Query 010342
Match_columns 512
No_of_seqs 683 out of 2233
Neff 12.2
Searched_HMMs 46136
Date Thu Mar 28 23:24:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010342.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010342hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03218 maturation of RBCL 1; 100.0 6.1E-71 1.3E-75 540.1 56.5 492 2-504 378-895 (1060)
2 PLN03218 maturation of RBCL 1; 100.0 8.7E-69 1.9E-73 525.0 54.5 478 2-492 414-916 (1060)
3 PLN03077 Protein ECB2; Provisi 100.0 7.1E-69 1.5E-73 536.4 49.6 482 2-506 129-640 (857)
4 PLN03077 Protein ECB2; Provisi 100.0 7.4E-68 1.6E-72 529.1 49.9 476 2-506 94-604 (857)
5 PLN03081 pentatricopeptide (PP 100.0 5.8E-65 1.2E-69 496.5 48.8 464 2-489 95-561 (697)
6 PLN03081 pentatricopeptide (PP 100.0 1.1E-62 2.3E-67 480.5 50.4 458 26-507 84-544 (697)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 5.5E-32 1.2E-36 278.5 56.5 480 6-508 409-888 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 1.2E-31 2.6E-36 275.9 55.2 480 5-506 340-819 (899)
9 PRK11447 cellulose synthase su 100.0 1.1E-23 2.4E-28 216.8 55.3 488 3-506 121-726 (1157)
10 PRK11447 cellulose synthase su 100.0 8E-23 1.7E-27 210.4 53.9 481 3-506 71-686 (1157)
11 PRK09782 bacteriophage N4 rece 99.9 3.3E-20 7.2E-25 182.7 51.6 476 6-506 56-692 (987)
12 KOG4626 O-linked N-acetylgluco 99.9 4.8E-22 1E-26 174.6 34.3 436 32-491 51-489 (966)
13 PRK11788 tetratricopeptide rep 99.9 6E-22 1.3E-26 182.5 32.8 301 149-492 45-354 (389)
14 TIGR00990 3a0801s09 mitochondr 99.9 5.1E-20 1.1E-24 178.3 46.8 255 188-449 308-570 (615)
15 KOG2002 TPR-containing nuclear 99.9 3E-20 6.6E-25 171.7 41.9 489 3-505 208-730 (1018)
16 KOG4626 O-linked N-acetylgluco 99.9 2.8E-21 6.1E-26 169.8 32.0 367 29-414 116-484 (966)
17 PRK15174 Vi polysaccharide exp 99.9 5.6E-20 1.2E-24 177.2 42.7 330 110-450 48-381 (656)
18 PRK11788 tetratricopeptide rep 99.9 1E-20 2.2E-25 174.4 32.4 307 111-457 42-354 (389)
19 PRK15174 Vi polysaccharide exp 99.9 4.9E-19 1.1E-23 170.7 42.0 360 114-485 15-381 (656)
20 PRK09782 bacteriophage N4 rece 99.9 5.4E-18 1.2E-22 167.3 47.8 403 64-491 181-710 (987)
21 PRK14574 hmsH outer membrane p 99.9 9.2E-18 2E-22 162.2 48.4 430 4-450 44-513 (822)
22 PRK10049 pgaA outer membrane p 99.9 3.3E-18 7.2E-23 168.7 46.2 426 28-501 14-470 (765)
23 PRK10049 pgaA outer membrane p 99.9 4.6E-18 1E-22 167.7 47.2 403 4-458 25-462 (765)
24 TIGR00990 3a0801s09 mitochondr 99.9 4.6E-18 9.9E-23 164.8 45.9 369 107-485 130-571 (615)
25 PRK14574 hmsH outer membrane p 99.9 1.7E-17 3.8E-22 160.3 48.5 445 31-493 36-519 (822)
26 KOG2002 TPR-containing nuclear 99.9 2.4E-18 5.2E-23 159.3 39.6 477 8-498 250-758 (1018)
27 KOG2003 TPR repeat-containing 99.8 1.3E-17 2.8E-22 141.8 27.2 463 32-507 204-710 (840)
28 KOG0495 HAT repeat protein [RN 99.8 2.4E-14 5.3E-19 127.5 46.8 476 7-507 389-867 (913)
29 KOG4422 Uncharacterized conser 99.8 4.5E-15 9.7E-20 125.5 40.1 432 29-488 116-593 (625)
30 KOG4422 Uncharacterized conser 99.8 1E-15 2.2E-20 129.3 36.3 444 4-477 125-617 (625)
31 KOG1915 Cell cycle control pro 99.8 2.8E-14 6.2E-19 122.3 42.8 456 6-483 85-583 (677)
32 KOG1915 Cell cycle control pro 99.8 3.6E-14 7.7E-19 121.7 42.4 447 30-498 74-547 (677)
33 KOG0495 HAT repeat protein [RN 99.8 7.4E-14 1.6E-18 124.5 45.7 465 3-490 415-883 (913)
34 KOG2076 RNA polymerase III tra 99.8 2.1E-14 4.6E-19 132.8 40.0 434 6-450 151-695 (895)
35 KOG2003 TPR repeat-containing 99.7 4.9E-15 1.1E-19 126.3 26.8 441 3-471 246-709 (840)
36 KOG2076 RNA polymerase III tra 99.7 1.6E-13 3.5E-18 127.1 35.5 352 149-505 149-540 (895)
37 PF13429 TPR_15: Tetratricopep 99.7 4.3E-17 9.3E-22 142.0 10.5 261 215-483 14-275 (280)
38 PRK10747 putative protoheme IX 99.7 2.6E-13 5.7E-18 123.7 33.4 285 187-484 97-389 (398)
39 TIGR00540 hemY_coli hemY prote 99.7 1.7E-13 3.7E-18 125.6 31.8 288 186-483 96-397 (409)
40 PF13429 TPR_15: Tetratricopep 99.7 2.2E-16 4.8E-21 137.5 12.0 225 216-448 51-275 (280)
41 TIGR00540 hemY_coli hemY prote 99.7 1.2E-13 2.7E-18 126.6 29.4 290 116-449 96-398 (409)
42 PRK10747 putative protoheme IX 99.7 4.7E-13 1E-17 122.0 31.7 252 185-449 129-389 (398)
43 COG2956 Predicted N-acetylgluc 99.7 3.5E-13 7.5E-18 110.1 26.3 235 31-273 38-278 (389)
44 KOG1155 Anaphase-promoting com 99.7 3.5E-11 7.5E-16 103.5 39.4 311 180-503 233-552 (559)
45 KOG0547 Translocase of outer m 99.7 1.1E-12 2.4E-17 113.2 30.5 405 3-449 124-565 (606)
46 KOG1155 Anaphase-promoting com 99.7 2E-11 4.3E-16 105.0 37.2 386 59-485 159-553 (559)
47 KOG0547 Translocase of outer m 99.7 9.8E-13 2.1E-17 113.5 29.5 412 31-484 117-565 (606)
48 COG3071 HemY Uncharacterized e 99.6 3.7E-12 8.1E-17 107.5 31.3 288 187-485 97-390 (400)
49 KOG3785 Uncharacterized conser 99.6 1.6E-11 3.4E-16 101.9 33.2 455 4-494 32-497 (557)
50 COG2956 Predicted N-acetylgluc 99.6 2.7E-12 5.9E-17 105.0 27.7 289 188-484 49-346 (389)
51 KOG1173 Anaphase-promoting com 99.6 5.2E-11 1.1E-15 105.1 37.1 285 206-500 241-531 (611)
52 KOG1126 DNA-binding cell divis 99.6 4E-13 8.7E-18 120.5 24.0 281 189-485 334-620 (638)
53 COG3071 HemY Uncharacterized e 99.6 8.5E-12 1.8E-16 105.4 30.0 292 152-455 97-395 (400)
54 KOG1126 DNA-binding cell divis 99.6 1.5E-12 3.3E-17 116.9 23.6 290 154-456 334-626 (638)
55 KOG3785 Uncharacterized conser 99.6 1.5E-10 3.2E-15 96.3 33.1 423 3-460 66-498 (557)
56 KOG2047 mRNA splicing factor [ 99.6 1.4E-09 3.1E-14 97.6 41.1 466 4-484 112-686 (835)
57 KOG4318 Bicoid mRNA stability 99.5 5.8E-11 1.3E-15 110.2 30.6 254 15-294 11-286 (1088)
58 KOG1173 Anaphase-promoting com 99.5 3.4E-10 7.4E-15 100.1 31.5 285 173-467 243-533 (611)
59 TIGR02521 type_IV_pilW type IV 99.5 4.3E-11 9.3E-16 102.1 25.2 201 278-484 30-231 (234)
60 KOG1174 Anaphase-promoting com 99.5 5.8E-09 1.3E-13 88.8 35.5 317 170-498 190-512 (564)
61 KOG4318 Bicoid mRNA stability 99.5 4.3E-11 9.4E-16 111.0 24.3 275 50-366 11-286 (1088)
62 KOG1156 N-terminal acetyltrans 99.5 1E-08 2.2E-13 92.5 38.0 434 31-487 10-470 (700)
63 KOG1129 TPR repeat-containing 99.5 1.2E-11 2.7E-16 101.4 18.1 236 246-491 225-462 (478)
64 TIGR02521 type_IV_pilW type IV 99.5 7.2E-11 1.6E-15 100.7 24.1 195 250-449 37-231 (234)
65 KOG4162 Predicted calmodulin-b 99.5 2.4E-08 5.2E-13 92.0 40.6 381 99-484 318-782 (799)
66 PRK12370 invasion protein regu 99.5 2E-10 4.4E-15 109.7 29.2 251 224-486 276-536 (553)
67 KOG2376 Signal recognition par 99.4 1.1E-08 2.4E-13 91.2 36.8 119 36-168 19-139 (652)
68 KOG1156 N-terminal acetyltrans 99.4 1.1E-08 2.4E-13 92.3 36.3 423 5-448 52-509 (700)
69 PF12569 NARP1: NMDA receptor- 99.4 2.2E-09 4.8E-14 99.0 33.3 289 3-306 13-332 (517)
70 PRK12370 invasion protein regu 99.4 1.8E-10 4E-15 110.0 24.8 251 153-416 275-536 (553)
71 PF13041 PPR_2: PPR repeat fam 99.4 1.4E-12 3.1E-17 79.1 6.6 50 454-503 1-50 (50)
72 PF13041 PPR_2: PPR repeat fam 99.4 1.2E-12 2.6E-17 79.4 6.2 50 27-76 1-50 (50)
73 KOG2047 mRNA splicing factor [ 99.4 2E-07 4.4E-12 84.3 46.0 452 29-498 102-629 (835)
74 KOG1129 TPR repeat-containing 99.4 5.7E-11 1.2E-15 97.6 17.3 234 210-451 224-459 (478)
75 KOG1174 Anaphase-promoting com 99.4 1.3E-07 2.8E-12 80.9 37.1 291 150-451 207-501 (564)
76 PF12569 NARP1: NMDA receptor- 99.4 5.1E-09 1.1E-13 96.6 30.2 180 264-449 131-333 (517)
77 KOG4162 Predicted calmodulin-b 99.3 1.2E-08 2.6E-13 93.9 31.8 410 25-450 319-783 (799)
78 COG3063 PilF Tfp pilus assembl 99.3 7.5E-09 1.6E-13 81.3 23.7 209 281-497 37-246 (250)
79 KOG2376 Signal recognition par 99.3 3.1E-07 6.7E-12 82.3 36.2 444 2-482 20-517 (652)
80 COG3063 PilF Tfp pilus assembl 99.3 7.5E-09 1.6E-13 81.2 22.8 195 251-450 42-236 (250)
81 KOG4340 Uncharacterized conser 99.3 1.3E-08 2.8E-13 83.0 24.5 318 31-377 12-336 (459)
82 KOG1840 Kinesin light chain [C 99.3 2.7E-08 5.9E-13 90.8 28.6 204 249-483 246-477 (508)
83 KOG0985 Vesicle coat protein c 99.2 2.4E-06 5.1E-11 81.7 40.5 445 5-477 654-1241(1666)
84 PRK11189 lipoprotein NlpI; Pro 99.2 1.6E-08 3.6E-13 88.3 25.3 204 280-495 65-274 (296)
85 KOG1840 Kinesin light chain [C 99.2 1.2E-08 2.6E-13 93.1 24.5 166 141-306 285-477 (508)
86 PF04733 Coatomer_E: Coatomer 99.2 3.2E-09 7E-14 91.1 17.4 180 293-484 80-264 (290)
87 cd05804 StaR_like StaR_like; a 99.2 3.7E-07 8E-12 83.2 31.9 202 281-484 116-335 (355)
88 PRK11189 lipoprotein NlpI; Pro 99.2 7.5E-08 1.6E-12 84.2 26.1 189 252-451 72-266 (296)
89 KOG0985 Vesicle coat protein c 99.1 4.7E-06 1E-10 79.7 37.0 395 15-475 968-1373(1666)
90 KOG4340 Uncharacterized conser 99.1 2.7E-07 5.9E-12 75.5 25.3 190 4-206 20-210 (459)
91 KOG0548 Molecular co-chaperone 99.1 1.3E-06 2.8E-11 77.6 31.4 219 248-484 228-454 (539)
92 cd05804 StaR_like StaR_like; a 99.1 8.6E-07 1.9E-11 80.8 32.0 201 29-237 6-214 (355)
93 KOG0624 dsRNA-activated protei 99.1 3.4E-06 7.4E-11 70.7 31.6 329 28-416 37-371 (504)
94 KOG3617 WD40 and TPR repeat-co 99.1 6.2E-06 1.3E-10 77.2 36.2 209 3-235 737-993 (1416)
95 KOG0548 Molecular co-chaperone 99.1 1.6E-06 3.6E-11 77.0 30.7 103 3-114 11-114 (539)
96 PRK04841 transcriptional regul 99.1 4.3E-06 9.4E-11 86.5 38.0 372 112-485 349-760 (903)
97 PF04733 Coatomer_E: Coatomer 99.0 3.5E-08 7.6E-13 84.8 18.4 249 184-450 11-265 (290)
98 KOG1127 TPR repeat-containing 99.0 4E-06 8.8E-11 80.1 31.5 458 9-483 473-994 (1238)
99 PRK04841 transcriptional regul 99.0 7.8E-07 1.7E-11 91.9 29.4 269 147-415 460-760 (903)
100 KOG0624 dsRNA-activated protei 99.0 4.6E-06 9.9E-11 69.9 27.3 309 109-451 43-371 (504)
101 KOG1125 TPR repeat-containing 99.0 8.7E-08 1.9E-12 85.6 18.3 220 220-446 296-523 (579)
102 KOG3616 Selective LIM binding 98.9 9.6E-06 2.1E-10 75.1 30.9 52 145-199 856-907 (1636)
103 KOG3616 Selective LIM binding 98.9 5.6E-06 1.2E-10 76.6 29.4 192 251-478 739-930 (1636)
104 KOG3617 WD40 and TPR repeat-co 98.9 4.4E-06 9.5E-11 78.2 28.2 380 28-481 725-1170(1416)
105 KOG1127 TPR repeat-containing 98.9 1.4E-05 3E-10 76.6 29.6 479 3-495 571-1113(1238)
106 KOG1070 rRNA processing protei 98.9 2.2E-06 4.8E-11 84.7 24.9 187 281-475 1499-1690(1710)
107 KOG1128 Uncharacterized conser 98.8 9.9E-07 2.1E-11 81.3 21.1 216 246-484 400-615 (777)
108 PRK14720 transcript cleavage f 98.8 2.2E-06 4.8E-11 83.6 24.5 237 28-326 30-268 (906)
109 KOG1125 TPR repeat-containing 98.8 9.7E-07 2.1E-11 79.1 20.1 222 148-377 294-524 (579)
110 PRK10370 formate-dependent nit 98.8 2E-06 4.3E-11 69.9 20.1 117 365-484 53-172 (198)
111 PLN02789 farnesyltranstransfer 98.8 8.2E-06 1.8E-10 71.4 24.7 218 258-483 51-300 (320)
112 KOG1914 mRNA cleavage and poly 98.8 9.7E-05 2.1E-09 66.2 35.6 151 260-413 347-499 (656)
113 PF12854 PPR_1: PPR repeat 98.8 8.7E-09 1.9E-13 55.8 3.8 34 23-56 1-34 (34)
114 KOG3081 Vesicle coat complex C 98.8 1.7E-05 3.8E-10 64.2 23.3 152 321-484 114-270 (299)
115 KOG1128 Uncharacterized conser 98.8 7.7E-07 1.7E-11 82.0 17.5 235 210-467 399-634 (777)
116 COG5010 TadD Flp pilus assembl 98.8 3.6E-06 7.7E-11 68.1 19.2 158 319-481 70-227 (257)
117 PF12854 PPR_1: PPR repeat 98.7 1.4E-08 3E-13 55.0 3.7 32 451-482 2-33 (34)
118 TIGR03302 OM_YfiO outer membra 98.7 2.2E-06 4.8E-11 72.8 19.1 191 276-485 30-232 (235)
119 KOG1070 rRNA processing protei 98.7 9.5E-06 2.1E-10 80.4 24.8 224 279-508 1458-1688(1710)
120 COG5010 TadD Flp pilus assembl 98.7 4.1E-06 8.9E-11 67.8 18.5 159 283-447 70-228 (257)
121 PLN02789 farnesyltranstransfer 98.7 1.2E-05 2.7E-10 70.3 22.9 213 284-504 42-268 (320)
122 PRK10370 formate-dependent nit 98.7 4.2E-06 9.1E-11 68.0 18.8 156 286-459 23-181 (198)
123 KOG3081 Vesicle coat complex C 98.7 1.1E-05 2.4E-10 65.3 19.8 208 283-506 45-256 (299)
124 TIGR03302 OM_YfiO outer membra 98.7 5.9E-06 1.3E-10 70.2 19.6 187 243-450 32-232 (235)
125 PRK15359 type III secretion sy 98.7 1.1E-06 2.4E-11 67.4 13.4 94 389-484 27-120 (144)
126 KOG2053 Mitochondrial inherita 98.6 0.0005 1.1E-08 65.7 41.4 93 354-448 439-534 (932)
127 PRK15359 type III secretion sy 98.6 3.1E-06 6.8E-11 64.9 14.8 110 353-465 26-135 (144)
128 PRK15179 Vi polysaccharide bio 98.6 2.4E-05 5.2E-10 75.8 24.0 146 312-462 83-228 (694)
129 PRK15179 Vi polysaccharide bio 98.6 3.3E-05 7.1E-10 74.9 24.4 136 240-380 82-217 (694)
130 TIGR02552 LcrH_SycD type III s 98.6 2.8E-06 6E-11 65.0 14.2 104 387-494 18-121 (135)
131 KOG1914 mRNA cleavage and poly 98.6 0.00048 1E-08 62.0 39.2 186 295-484 309-500 (656)
132 KOG3060 Uncharacterized conser 98.5 0.00012 2.5E-09 59.1 20.5 187 259-451 27-221 (289)
133 PRK14720 transcript cleavage f 98.5 0.00015 3.3E-09 71.2 25.1 239 173-467 30-268 (906)
134 TIGR02552 LcrH_SycD type III s 98.5 1.1E-05 2.5E-10 61.6 14.2 98 351-450 17-114 (135)
135 COG4783 Putative Zn-dependent 98.5 0.00011 2.5E-09 65.1 21.4 147 325-495 316-463 (484)
136 COG4783 Putative Zn-dependent 98.4 0.0002 4.4E-09 63.6 20.9 147 288-459 315-462 (484)
137 KOG3060 Uncharacterized conser 98.3 0.00034 7.3E-09 56.6 19.5 189 187-416 25-221 (289)
138 KOG2053 Mitochondrial inherita 98.3 0.0036 7.8E-08 60.2 44.1 221 5-241 20-258 (932)
139 TIGR00756 PPR pentatricopeptid 98.3 1.5E-06 3.3E-11 48.0 4.5 33 458-490 2-34 (35)
140 TIGR00756 PPR pentatricopeptid 98.3 1.6E-06 3.4E-11 48.0 4.5 34 31-64 2-35 (35)
141 PF13812 PPR_3: Pentatricopept 98.3 1.8E-06 3.9E-11 47.3 4.3 33 30-62 2-34 (34)
142 PF13812 PPR_3: Pentatricopept 98.2 2.4E-06 5.1E-11 46.8 4.3 33 457-489 2-34 (34)
143 PF09295 ChAPs: ChAPs (Chs5p-A 98.2 6E-05 1.3E-09 67.4 15.3 123 355-483 173-295 (395)
144 PF09976 TPR_21: Tetratricopep 98.2 8.8E-05 1.9E-09 57.2 14.5 126 353-482 14-144 (145)
145 KOG2041 WD40 repeat protein [G 98.2 0.0015 3.3E-08 60.8 23.8 371 61-484 689-1085(1189)
146 PF07079 DUF1347: Protein of u 98.2 0.0037 8.1E-08 55.3 39.5 455 5-497 17-531 (549)
147 PF09295 ChAPs: ChAPs (Chs5p-A 98.2 8.9E-05 1.9E-09 66.3 14.5 125 281-413 171-295 (395)
148 PF09976 TPR_21: Tetratricopep 98.1 0.00021 4.6E-09 55.1 14.5 117 328-446 24-143 (145)
149 TIGR02795 tol_pal_ybgF tol-pal 98.1 0.00021 4.6E-09 53.1 13.4 98 388-485 4-105 (119)
150 cd00189 TPR Tetratricopeptide 98.1 0.00011 2.4E-09 52.1 11.2 94 389-484 3-96 (100)
151 PF14938 SNAP: Soluble NSF att 98.0 0.001 2.2E-08 58.0 18.8 54 183-237 123-183 (282)
152 PF10037 MRP-S27: Mitochondria 98.0 0.0001 2.2E-09 66.3 12.3 123 312-434 63-186 (429)
153 PLN03088 SGT1, suppressor of 98.0 0.0002 4.3E-09 64.4 14.3 92 358-451 9-100 (356)
154 PF08579 RPM2: Mitochondrial r 98.0 3.5E-05 7.5E-10 53.6 6.6 84 32-116 28-116 (120)
155 PF05843 Suf: Suppressor of fo 98.0 0.00023 5.1E-09 61.6 13.1 129 353-484 3-135 (280)
156 cd00189 TPR Tetratricopeptide 98.0 0.00018 4E-09 50.9 10.8 95 354-450 3-97 (100)
157 PF10037 MRP-S27: Mitochondria 97.9 0.00017 3.6E-09 64.9 12.3 124 346-469 61-186 (429)
158 COG4235 Cytochrome c biogenesi 97.9 0.00078 1.7E-08 56.5 15.2 112 383-498 153-267 (287)
159 KOG0550 Molecular chaperone (D 97.9 0.0018 3.9E-08 56.5 17.6 157 288-450 178-350 (486)
160 PF01535 PPR: PPR repeat; Int 97.9 1.5E-05 3.4E-10 42.4 3.6 29 458-486 2-30 (31)
161 PF08579 RPM2: Mitochondrial r 97.9 0.00011 2.4E-09 51.2 8.4 78 144-221 30-116 (120)
162 PF01535 PPR: PPR repeat; Int 97.9 1.4E-05 3.1E-10 42.5 3.4 31 30-60 1-31 (31)
163 KOG0553 TPR repeat-containing 97.9 0.00079 1.7E-08 56.1 14.8 94 362-459 92-185 (304)
164 PRK15363 pathogenicity island 97.9 0.00069 1.5E-08 51.3 12.4 91 357-449 41-131 (157)
165 PF14938 SNAP: Soluble NSF att 97.9 0.0052 1.1E-07 53.6 19.9 171 31-238 37-225 (282)
166 PRK10153 DNA-binding transcrip 97.8 0.0011 2.5E-08 62.4 16.5 143 348-495 334-490 (517)
167 PRK15363 pathogenicity island 97.8 0.00049 1.1E-08 52.1 11.4 94 389-484 38-131 (157)
168 PF12895 Apc3: Anaphase-promot 97.8 2.5E-05 5.4E-10 53.6 4.3 81 7-89 2-83 (84)
169 PF12895 Apc3: Anaphase-promot 97.8 3.7E-05 8E-10 52.8 5.1 81 399-481 2-83 (84)
170 PLN03088 SGT1, suppressor of 97.8 0.00073 1.6E-08 60.9 14.4 93 321-416 8-100 (356)
171 CHL00033 ycf3 photosystem I as 97.8 0.0006 1.3E-08 54.2 12.4 60 354-413 38-99 (168)
172 TIGR02795 tol_pal_ybgF tol-pal 97.8 0.00092 2E-08 49.6 12.8 96 284-379 7-104 (119)
173 PRK02603 photosystem I assembl 97.8 0.0015 3.2E-08 52.2 14.5 84 354-438 38-123 (172)
174 KOG2041 WD40 repeat protein [G 97.8 0.015 3.2E-07 54.6 21.9 65 315-379 1021-1085(1189)
175 PF14559 TPR_19: Tetratricopep 97.8 5.9E-05 1.3E-09 49.3 5.2 64 5-71 2-65 (68)
176 PRK10866 outer membrane biogen 97.8 0.0096 2.1E-07 50.3 19.2 64 32-97 35-102 (243)
177 PRK10866 outer membrane biogen 97.8 0.0027 5.8E-08 53.6 15.8 55 4-59 42-99 (243)
178 PRK02603 photosystem I assembl 97.7 0.0023 5.1E-08 51.1 14.7 88 316-404 36-124 (172)
179 COG4700 Uncharacterized protei 97.7 0.012 2.5E-07 45.5 17.9 127 313-442 87-214 (251)
180 COG4235 Cytochrome c biogenesi 97.7 0.0026 5.6E-08 53.5 14.9 113 348-464 153-268 (287)
181 PF05843 Suf: Suppressor of fo 97.7 0.00083 1.8E-08 58.2 12.6 128 281-413 3-134 (280)
182 KOG0553 TPR repeat-containing 97.7 0.00077 1.7E-08 56.2 11.3 101 323-428 89-189 (304)
183 PF13432 TPR_16: Tetratricopep 97.7 0.00026 5.7E-09 45.7 6.8 56 428-484 4-59 (65)
184 CHL00033 ycf3 photosystem I as 97.6 0.0015 3.2E-08 52.0 12.2 115 367-482 15-139 (168)
185 PF14559 TPR_19: Tetratricopep 97.6 0.00021 4.5E-09 46.7 5.9 63 432-497 2-64 (68)
186 PF04840 Vps16_C: Vps16, C-ter 97.6 0.046 1E-06 48.1 24.5 109 352-480 178-286 (319)
187 PF06239 ECSIT: Evolutionarily 97.6 0.0008 1.7E-08 53.5 9.2 91 28-119 46-153 (228)
188 PF13432 TPR_16: Tetratricopep 97.5 0.00056 1.2E-08 44.1 7.1 58 392-450 3-60 (65)
189 KOG0550 Molecular chaperone (D 97.5 0.021 4.5E-07 50.2 17.9 196 298-502 151-368 (486)
190 PF12688 TPR_5: Tetratrico pep 97.5 0.0061 1.3E-07 44.5 12.8 92 251-342 8-102 (120)
191 PF13414 TPR_11: TPR repeat; P 97.5 0.00049 1.1E-08 45.0 6.7 63 421-484 3-66 (69)
192 PRK10153 DNA-binding transcrip 97.5 0.011 2.5E-07 55.9 17.8 66 383-450 417-482 (517)
193 PF06239 ECSIT: Evolutionarily 97.5 0.0019 4.1E-08 51.4 10.4 99 370-470 33-152 (228)
194 COG4700 Uncharacterized protei 97.5 0.031 6.8E-07 43.3 18.1 131 276-409 86-216 (251)
195 PF13414 TPR_11: TPR repeat; P 97.5 0.00056 1.2E-08 44.8 6.3 65 385-450 2-67 (69)
196 PF03704 BTAD: Bacterial trans 97.4 0.0077 1.7E-07 46.6 13.2 74 423-497 64-142 (146)
197 KOG2796 Uncharacterized conser 97.4 0.014 3E-07 47.9 14.1 136 32-168 180-315 (366)
198 PF12688 TPR_5: Tetratrico pep 97.4 0.014 3E-07 42.6 12.9 53 361-413 11-65 (120)
199 PF13371 TPR_9: Tetratricopept 97.3 0.0023 4.9E-08 42.4 8.1 63 429-494 3-65 (73)
200 PRK10803 tol-pal system protei 97.3 0.0027 5.9E-08 54.0 10.1 103 31-138 145-251 (263)
201 KOG1538 Uncharacterized conser 97.3 0.044 9.6E-07 51.1 17.5 268 172-485 554-846 (1081)
202 PF13525 YfiO: Outer membrane 97.3 0.04 8.6E-07 45.3 16.2 68 30-97 6-75 (203)
203 PRK10803 tol-pal system protei 97.2 0.0094 2E-07 50.8 12.5 95 389-484 146-245 (263)
204 KOG1130 Predicted G-alpha GTPa 97.2 0.0024 5.3E-08 55.6 8.8 273 31-307 17-343 (639)
205 KOG2796 Uncharacterized conser 97.2 0.1 2.2E-06 43.0 20.6 140 317-460 179-323 (366)
206 KOG1130 Predicted G-alpha GTPa 97.1 0.0054 1.2E-07 53.6 10.2 286 182-484 25-343 (639)
207 COG3898 Uncharacterized membra 97.1 0.16 3.5E-06 44.5 25.4 311 156-486 70-393 (531)
208 COG3898 Uncharacterized membra 97.1 0.18 4E-06 44.2 30.7 297 141-454 84-396 (531)
209 PF13281 DUF4071: Domain of un 97.0 0.097 2.1E-06 46.6 16.9 80 106-185 143-228 (374)
210 KOG1538 Uncharacterized conser 97.0 0.14 3E-06 48.0 18.2 89 279-380 747-846 (1081)
211 PF13371 TPR_9: Tetratricopept 97.0 0.006 1.3E-07 40.3 7.6 56 394-450 3-58 (73)
212 PF03704 BTAD: Bacterial trans 97.0 0.0084 1.8E-07 46.4 9.3 100 6-106 18-138 (146)
213 PF10345 Cohesin_load: Cohesin 97.0 0.46 1E-05 46.8 36.8 445 28-484 29-605 (608)
214 PRK15331 chaperone protein Sic 96.9 0.009 2E-07 45.6 8.7 85 5-91 48-132 (165)
215 PF12921 ATP13: Mitochondrial 96.9 0.021 4.6E-07 42.2 10.4 52 416-467 47-99 (126)
216 KOG1258 mRNA processing protei 96.9 0.38 8.2E-06 45.0 31.1 61 30-92 46-107 (577)
217 PF13525 YfiO: Outer membrane 96.8 0.081 1.8E-06 43.5 14.5 66 67-135 8-73 (203)
218 PRK15331 chaperone protein Sic 96.8 0.15 3.3E-06 39.1 14.5 85 363-449 49-133 (165)
219 PF12921 ATP13: Mitochondrial 96.8 0.024 5.2E-07 41.9 9.8 81 280-360 3-97 (126)
220 COG4105 ComL DNA uptake lipopr 96.8 0.24 5.2E-06 41.1 17.3 171 5-201 45-231 (254)
221 PF13424 TPR_12: Tetratricopep 96.8 0.0055 1.2E-07 41.2 6.1 64 66-129 7-71 (78)
222 COG5107 RNA14 Pre-mRNA 3'-end 96.7 0.45 9.8E-06 42.8 34.2 130 351-484 397-530 (660)
223 PF10300 DUF3808: Protein of u 96.7 0.17 3.8E-06 47.6 16.9 117 364-483 246-374 (468)
224 PF13424 TPR_12: Tetratricopep 96.7 0.0063 1.4E-07 40.9 5.6 61 423-483 7-73 (78)
225 PF07079 DUF1347: Protein of u 96.6 0.52 1.1E-05 42.5 38.1 422 9-461 60-530 (549)
226 KOG2114 Vacuolar assembly/sort 96.6 0.83 1.8E-05 44.6 23.8 51 391-445 710-760 (933)
227 PF09205 DUF1955: Domain of un 96.6 0.16 3.5E-06 37.0 12.1 139 291-453 14-152 (161)
228 KOG2280 Vacuolar assembly/sort 96.6 0.78 1.7E-05 44.2 30.5 117 345-480 678-794 (829)
229 COG3118 Thioredoxin domain-con 96.5 0.4 8.8E-06 40.7 15.8 54 183-237 143-196 (304)
230 PLN03098 LPA1 LOW PSII ACCUMUL 96.4 0.06 1.3E-06 48.7 11.7 64 350-415 74-141 (453)
231 KOG1585 Protein required for f 96.4 0.4 8.7E-06 39.3 15.0 25 32-56 34-58 (308)
232 COG3118 Thioredoxin domain-con 96.4 0.46 1E-05 40.3 15.9 123 218-344 143-265 (304)
233 PF04840 Vps16_C: Vps16, C-ter 96.4 0.63 1.4E-05 41.1 29.1 108 317-445 179-286 (319)
234 PF09205 DUF1955: Domain of un 96.4 0.24 5.2E-06 36.2 14.1 140 326-488 13-152 (161)
235 PF04053 Coatomer_WDAD: Coatom 96.4 0.13 2.9E-06 47.6 14.0 130 281-445 297-426 (443)
236 PF13281 DUF4071: Domain of un 96.4 0.71 1.5E-05 41.4 20.4 31 420-450 304-334 (374)
237 KOG2610 Uncharacterized conser 96.4 0.12 2.5E-06 44.4 12.1 151 291-447 115-273 (491)
238 PRK11906 transcriptional regul 96.4 0.41 9E-06 43.6 16.3 148 331-481 274-432 (458)
239 PF13512 TPR_18: Tetratricopep 96.3 0.067 1.5E-06 40.0 9.6 72 5-76 21-94 (142)
240 KOG1920 IkappaB kinase complex 96.3 1.3 2.8E-05 45.3 20.6 79 358-448 946-1026(1265)
241 PLN03098 LPA1 LOW PSII ACCUMUL 96.3 0.064 1.4E-06 48.5 11.0 101 383-488 72-177 (453)
242 KOG0543 FKBP-type peptidyl-pro 96.2 0.1 2.2E-06 46.1 11.7 95 387-484 258-354 (397)
243 KOG0543 FKBP-type peptidyl-pro 96.1 0.19 4.1E-06 44.5 12.6 97 352-450 258-355 (397)
244 KOG1258 mRNA processing protei 96.1 1.3 2.8E-05 41.7 29.4 186 208-400 296-489 (577)
245 COG1729 Uncharacterized protei 96.1 0.097 2.1E-06 43.8 10.2 104 31-138 144-249 (262)
246 KOG1585 Protein required for f 96.1 0.2 4.4E-06 41.0 11.5 202 3-233 40-251 (308)
247 PRK11906 transcriptional regul 96.0 0.44 9.5E-06 43.5 14.6 140 366-509 273-426 (458)
248 KOG2280 Vacuolar assembly/sort 95.9 1.7 3.8E-05 42.0 26.6 107 318-444 687-793 (829)
249 PF04053 Coatomer_WDAD: Coatom 95.9 0.32 7E-06 45.2 14.0 156 38-234 270-427 (443)
250 COG3629 DnrI DNA-binding trans 95.7 0.21 4.6E-06 42.5 11.0 73 388-461 155-232 (280)
251 PF10300 DUF3808: Protein of u 95.7 0.93 2E-05 42.9 16.3 163 282-448 191-374 (468)
252 PF10602 RPN7: 26S proteasome 95.7 0.22 4.9E-06 39.6 10.6 101 30-132 37-141 (177)
253 PF13428 TPR_14: Tetratricopep 95.6 0.056 1.2E-06 31.2 5.3 27 458-484 3-29 (44)
254 smart00299 CLH Clathrin heavy 95.6 0.74 1.6E-05 35.1 15.4 66 280-362 70-136 (140)
255 COG1729 Uncharacterized protei 95.5 0.56 1.2E-05 39.4 12.6 96 353-450 144-244 (262)
256 KOG2610 Uncharacterized conser 95.4 0.67 1.4E-05 40.0 12.6 156 254-414 113-275 (491)
257 PF13428 TPR_14: Tetratricopep 95.3 0.071 1.5E-06 30.8 5.0 27 424-450 4-30 (44)
258 PF13170 DUF4003: Protein of u 95.3 1.2 2.6E-05 39.0 14.4 85 10-96 78-171 (297)
259 COG4105 ComL DNA uptake lipopr 95.2 1.6 3.4E-05 36.5 21.8 183 280-484 36-232 (254)
260 KOG3941 Intermediate in Toll s 95.1 0.19 4.1E-06 42.0 8.6 72 8-79 86-173 (406)
261 COG4649 Uncharacterized protei 95.1 1.2 2.5E-05 34.6 13.8 125 290-414 69-195 (221)
262 PF13512 TPR_18: Tetratricopep 95.0 1.1 2.3E-05 33.8 12.2 54 362-416 21-77 (142)
263 KOG2114 Vacuolar assembly/sort 95.0 4.1 8.9E-05 40.2 28.9 175 33-235 338-516 (933)
264 KOG1941 Acetylcholine receptor 94.8 1.3 2.8E-05 38.8 13.0 159 41-199 18-187 (518)
265 PF02259 FAT: FAT domain; Int 94.8 3.1 6.6E-05 37.9 21.7 65 208-272 145-212 (352)
266 KOG4555 TPR repeat-containing 94.8 0.57 1.2E-05 34.2 9.1 92 288-381 52-145 (175)
267 KOG1941 Acetylcholine receptor 94.7 1.4 3E-05 38.7 12.8 231 219-449 16-274 (518)
268 KOG3941 Intermediate in Toll s 94.7 0.39 8.5E-06 40.3 9.2 103 384-505 65-172 (406)
269 PF07035 Mic1: Colon cancer-as 94.7 1.6 3.6E-05 34.0 15.9 135 14-167 14-148 (167)
270 PF13170 DUF4003: Protein of u 94.6 2.9 6.4E-05 36.6 19.1 24 262-285 200-223 (297)
271 PF08631 SPO22: Meiosis protei 94.5 3 6.5E-05 36.4 24.5 19 465-483 255-273 (278)
272 KOG4555 TPR repeat-containing 94.4 1.1 2.3E-05 32.9 9.8 53 396-449 53-105 (175)
273 COG3629 DnrI DNA-binding trans 94.4 0.64 1.4E-05 39.7 10.3 82 31-113 155-236 (280)
274 smart00299 CLH Clathrin heavy 94.4 1.7 3.7E-05 33.2 16.4 85 283-377 11-95 (140)
275 PF04184 ST7: ST7 protein; In 94.3 4.3 9.4E-05 37.6 16.2 61 281-341 261-321 (539)
276 PF08631 SPO22: Meiosis protei 94.3 3.4 7.3E-05 36.1 24.2 62 211-273 86-150 (278)
277 PF09613 HrpB1_HrpK: Bacterial 94.3 1.9 4.2E-05 33.2 12.8 86 362-451 21-107 (160)
278 KOG1550 Extracellular protein 94.2 5.6 0.00012 38.8 17.6 151 327-486 261-427 (552)
279 PF00637 Clathrin: Region in C 93.8 0.0064 1.4E-07 46.8 -2.4 50 35-84 13-62 (143)
280 COG0457 NrfG FOG: TPR repeat [ 93.5 4 8.7E-05 34.3 27.6 202 279-484 59-264 (291)
281 PF13176 TPR_7: Tetratricopept 93.5 0.21 4.5E-06 27.2 4.0 26 458-483 1-26 (36)
282 PF13431 TPR_17: Tetratricopep 93.4 0.13 2.8E-06 27.6 3.0 32 17-49 2-33 (34)
283 COG4649 Uncharacterized protei 93.3 3.1 6.8E-05 32.3 14.7 23 285-307 173-195 (221)
284 PF13176 TPR_7: Tetratricopept 93.2 0.24 5.1E-06 27.0 3.9 24 32-55 2-25 (36)
285 PF13929 mRNA_stabil: mRNA sta 93.2 4.9 0.00011 34.4 14.3 57 100-156 198-255 (292)
286 PF04184 ST7: ST7 protein; In 93.1 7.5 0.00016 36.1 18.1 61 355-415 263-324 (539)
287 PRK15180 Vi polysaccharide bio 93.0 7.2 0.00016 35.9 21.9 89 148-238 332-420 (831)
288 PF13431 TPR_17: Tetratricopep 93.0 0.12 2.6E-06 27.8 2.4 20 421-440 13-32 (34)
289 cd00923 Cyt_c_Oxidase_Va Cytoc 93.0 0.47 1E-05 32.5 5.6 44 440-483 26-69 (103)
290 PF10602 RPN7: 26S proteasome 92.6 0.54 1.2E-05 37.5 6.8 88 3-90 45-139 (177)
291 PF00515 TPR_1: Tetratricopept 92.5 0.32 7E-06 25.9 3.9 27 458-484 3-29 (34)
292 KOG2066 Vacuolar assembly/sort 92.4 12 0.00026 36.8 23.6 110 4-128 366-478 (846)
293 KOG1464 COP9 signalosome, subu 92.2 6.3 0.00014 33.2 16.6 192 153-344 41-260 (440)
294 PF07719 TPR_2: Tetratricopept 92.0 0.41 9E-06 25.4 3.9 26 459-484 4-29 (34)
295 PF00637 Clathrin: Region in C 91.9 0.0081 1.8E-07 46.2 -4.2 46 183-228 16-61 (143)
296 COG0457 NrfG FOG: TPR repeat [ 91.7 7.2 0.00016 32.7 27.0 200 246-450 61-265 (291)
297 PF02284 COX5A: Cytochrome c o 91.6 3.4 7.4E-05 28.8 9.1 44 440-483 29-72 (108)
298 PRK15180 Vi polysaccharide bio 91.6 1.8 3.8E-05 39.5 9.2 126 322-451 296-421 (831)
299 PF09613 HrpB1_HrpK: Bacterial 91.1 5.9 0.00013 30.6 12.6 18 362-379 55-72 (160)
300 TIGR02561 HrpB1_HrpK type III 91.0 5.6 0.00012 30.2 10.5 53 362-416 21-74 (153)
301 KOG2396 HAT (Half-A-TPR) repea 90.9 14 0.00029 34.5 33.8 98 383-484 456-558 (568)
302 PF13929 mRNA_stabil: mRNA sta 90.7 10 0.00022 32.6 16.4 65 346-410 197-262 (292)
303 KOG4570 Uncharacterized conser 90.5 7.1 0.00015 33.8 11.1 101 277-380 62-164 (418)
304 KOG0276 Vesicle coat complex C 90.2 3 6.5E-05 39.4 9.5 100 186-306 649-748 (794)
305 PF07035 Mic1: Colon cancer-as 89.9 8.1 0.00018 30.3 14.4 35 51-85 16-50 (167)
306 PF00515 TPR_1: Tetratricopept 89.8 1.1 2.4E-05 23.8 4.3 28 423-450 3-30 (34)
307 KOG2300 Uncharacterized conser 89.7 17 0.00037 33.7 34.5 458 37-507 15-541 (629)
308 PF10345 Cohesin_load: Cohesin 89.6 23 0.00051 35.2 39.6 187 12-200 39-251 (608)
309 PF07719 TPR_2: Tetratricopept 89.6 1.1 2.4E-05 23.6 4.2 28 423-450 3-30 (34)
310 PF11207 DUF2989: Protein of u 89.3 5.5 0.00012 32.1 9.2 76 46-124 123-198 (203)
311 KOG0890 Protein kinase of the 89.0 47 0.001 37.9 26.0 324 109-450 1388-1731(2382)
312 PF02284 COX5A: Cytochrome c o 88.8 3.8 8.3E-05 28.6 6.9 61 11-72 27-87 (108)
313 cd00923 Cyt_c_Oxidase_Va Cytoc 88.5 5.2 0.00011 27.6 7.3 63 9-72 22-84 (103)
314 PF11207 DUF2989: Protein of u 88.5 5.2 0.00011 32.2 8.6 75 9-84 121-198 (203)
315 PF13374 TPR_10: Tetratricopep 88.3 1.5 3.2E-05 24.6 4.4 26 423-448 4-29 (42)
316 PF08424 NRDE-2: NRDE-2, neces 88.2 19 0.00041 32.3 16.3 118 368-487 48-185 (321)
317 KOG0276 Vesicle coat complex C 88.1 9 0.00019 36.5 11.0 99 325-445 647-745 (794)
318 COG2909 MalT ATP-dependent tra 88.1 32 0.00069 34.8 28.4 226 186-412 427-685 (894)
319 KOG4648 Uncharacterized conser 87.9 0.91 2E-05 39.3 4.4 89 2-92 105-193 (536)
320 PF13374 TPR_10: Tetratricopep 87.8 1.5 3.2E-05 24.6 4.2 28 30-57 3-30 (42)
321 COG1747 Uncharacterized N-term 87.5 25 0.00055 33.0 22.4 166 208-380 65-234 (711)
322 PF07163 Pex26: Pex26 protein; 87.3 6.1 0.00013 33.6 8.6 88 215-302 89-181 (309)
323 KOG4570 Uncharacterized conser 87.2 11 0.00024 32.7 10.1 105 204-309 59-165 (418)
324 PF13181 TPR_8: Tetratricopept 87.1 1.2 2.5E-05 23.6 3.2 25 459-483 4-28 (34)
325 KOG4077 Cytochrome c oxidase, 87.0 2.8 6.2E-05 30.4 5.7 43 406-448 69-111 (149)
326 KOG1920 IkappaB kinase complex 86.8 45 0.00097 35.1 19.9 53 357-412 971-1025(1265)
327 TIGR02561 HrpB1_HrpK type III 86.6 12 0.00027 28.5 10.7 53 326-380 21-73 (153)
328 KOG4234 TPR repeat-containing 86.5 7 0.00015 31.4 8.1 87 4-94 105-198 (271)
329 PF06552 TOM20_plant: Plant sp 86.3 15 0.00032 29.1 10.1 26 439-466 98-123 (186)
330 KOG3364 Membrane protein invol 85.7 13 0.00028 27.8 9.0 73 418-492 29-105 (149)
331 KOG0890 Protein kinase of the 85.6 74 0.0016 36.5 23.8 326 71-416 1390-1732(2382)
332 KOG1586 Protein required for f 85.5 20 0.00043 29.8 17.5 25 215-239 160-184 (288)
333 PF13174 TPR_6: Tetratricopept 85.1 1.6 3.5E-05 22.7 3.2 21 429-449 8-28 (33)
334 PF13181 TPR_8: Tetratricopept 84.8 3.3 7.3E-05 21.8 4.4 28 423-450 3-30 (34)
335 PF13174 TPR_6: Tetratricopept 84.8 1.6 3.4E-05 22.8 3.0 25 34-58 5-29 (33)
336 PF07721 TPR_4: Tetratricopept 84.8 1.8 3.8E-05 21.4 2.9 22 32-53 4-25 (26)
337 COG2976 Uncharacterized protei 84.5 20 0.00042 28.9 12.3 93 110-204 95-189 (207)
338 KOG4648 Uncharacterized conser 84.4 5.6 0.00012 34.8 7.3 92 357-450 103-194 (536)
339 TIGR03504 FimV_Cterm FimV C-te 84.3 2.7 5.8E-05 24.2 3.8 23 427-449 5-27 (44)
340 COG3947 Response regulator con 84.3 8.2 0.00018 33.0 8.0 72 32-104 282-353 (361)
341 PF06552 TOM20_plant: Plant sp 83.7 10 0.00023 29.9 7.9 28 472-501 96-123 (186)
342 KOG4234 TPR repeat-containing 83.7 19 0.00041 29.1 9.3 87 362-450 106-197 (271)
343 COG3947 Response regulator con 83.6 28 0.00061 30.0 16.9 59 177-236 282-340 (361)
344 COG4785 NlpI Lipoprotein NlpI, 83.5 23 0.0005 29.0 16.2 28 423-450 239-266 (297)
345 PF14853 Fis1_TPR_C: Fis1 C-te 83.2 6.5 0.00014 23.8 5.3 35 461-497 6-40 (53)
346 COG4455 ImpE Protein of avirul 82.6 14 0.0003 30.3 8.3 77 388-465 3-81 (273)
347 COG4455 ImpE Protein of avirul 82.4 13 0.00029 30.4 8.1 78 32-113 4-81 (273)
348 KOG1464 COP9 signalosome, subu 82.0 31 0.00066 29.3 24.0 188 6-230 39-252 (440)
349 KOG2063 Vacuolar assembly/sort 81.7 68 0.0015 33.1 16.0 56 3-58 316-375 (877)
350 PF11848 DUF3368: Domain of un 81.6 7.7 0.00017 22.9 5.2 34 466-499 12-45 (48)
351 TIGR03504 FimV_Cterm FimV C-te 81.3 4.3 9.4E-05 23.3 3.9 26 461-486 4-29 (44)
352 COG4785 NlpI Lipoprotein NlpI, 81.1 29 0.00063 28.5 15.5 179 292-486 78-267 (297)
353 KOG2471 TPR repeat-containing 80.6 50 0.0011 30.9 12.8 108 324-433 249-381 (696)
354 COG5107 RNA14 Pre-mRNA 3'-end 80.6 48 0.001 30.7 36.4 132 316-450 398-531 (660)
355 KOG2063 Vacuolar assembly/sort 79.4 81 0.0018 32.6 16.7 19 4-22 356-374 (877)
356 PF12862 Apc5: Anaphase-promot 79.2 9.5 0.00021 26.6 6.0 55 75-129 9-66 (94)
357 TIGR02508 type_III_yscG type I 78.9 19 0.00042 25.2 8.1 50 431-486 49-98 (115)
358 PF13762 MNE1: Mitochondrial s 78.6 27 0.00059 26.6 9.5 50 173-222 78-128 (145)
359 PF08424 NRDE-2: NRDE-2, neces 77.6 53 0.0012 29.5 13.9 86 10-97 47-135 (321)
360 PF10579 Rapsyn_N: Rapsyn N-te 77.6 9.1 0.0002 25.3 4.9 44 399-442 19-64 (80)
361 PRK11619 lytic murein transgly 77.5 82 0.0018 31.6 37.8 117 221-341 253-372 (644)
362 PF11663 Toxin_YhaV: Toxin wit 76.7 3 6.5E-05 30.8 2.9 28 435-464 109-136 (140)
363 KOG2062 26S proteasome regulat 76.6 85 0.0018 31.3 29.8 121 360-484 510-634 (929)
364 PF02259 FAT: FAT domain; Int 75.5 64 0.0014 29.3 24.6 68 312-379 143-212 (352)
365 smart00028 TPR Tetratricopepti 75.4 6.7 0.00015 19.5 3.7 25 459-483 4-28 (34)
366 COG2976 Uncharacterized protei 75.1 43 0.00092 27.1 14.1 91 394-486 97-189 (207)
367 PF10579 Rapsyn_N: Rapsyn N-te 75.0 13 0.00028 24.7 5.1 46 433-478 18-65 (80)
368 PRK10941 hypothetical protein; 74.7 43 0.00093 29.0 9.7 78 282-361 184-261 (269)
369 KOG0991 Replication factor C, 74.6 49 0.0011 27.6 11.7 72 312-386 191-273 (333)
370 KOG4507 Uncharacterized conser 74.5 64 0.0014 31.1 11.1 152 347-501 567-720 (886)
371 KOG1550 Extracellular protein 73.9 95 0.0021 30.6 25.7 280 190-484 228-537 (552)
372 TIGR02508 type_III_yscG type I 73.6 28 0.00062 24.4 7.0 58 148-212 48-105 (115)
373 PF03745 DUF309: Domain of unk 73.3 12 0.00025 23.6 4.6 47 5-51 10-61 (62)
374 KOG4077 Cytochrome c oxidase, 73.1 33 0.00072 25.3 7.1 41 443-483 71-111 (149)
375 KOG1498 26S proteasome regulat 72.6 76 0.0016 28.9 19.0 49 77-125 25-73 (439)
376 COG5159 RPN6 26S proteasome re 72.4 63 0.0014 27.9 9.7 48 5-52 14-68 (421)
377 KOG2066 Vacuolar assembly/sort 72.1 1.1E+02 0.0025 30.7 27.3 103 35-151 362-467 (846)
378 COG5159 RPN6 26S proteasome re 71.8 66 0.0014 27.8 19.2 203 34-237 8-234 (421)
379 PF07575 Nucleopor_Nup85: Nup8 71.0 1.1E+02 0.0024 30.2 18.5 32 468-499 507-538 (566)
380 cd00280 TRFH Telomeric Repeat 70.9 38 0.00082 27.0 7.6 67 10-79 85-158 (200)
381 PF11846 DUF3366: Domain of un 70.4 15 0.00033 29.9 6.0 61 33-95 112-175 (193)
382 PRK12798 chemotaxis protein; R 70.3 91 0.002 28.8 17.1 212 7-221 125-342 (421)
383 COG0790 FOG: TPR repeat, SEL1 70.1 77 0.0017 27.9 22.2 126 365-497 127-278 (292)
384 KOG2582 COP9 signalosome, subu 70.1 83 0.0018 28.3 15.1 16 186-201 195-210 (422)
385 PF07163 Pex26: Pex26 protein; 69.9 73 0.0016 27.5 12.1 53 145-197 124-181 (309)
386 PRK09687 putative lyase; Provi 69.5 78 0.0017 27.7 24.8 134 280-431 143-277 (280)
387 PF11848 DUF3368: Domain of un 69.2 21 0.00045 21.0 4.8 34 39-72 12-45 (48)
388 PF11663 Toxin_YhaV: Toxin wit 69.2 7.1 0.00015 29.0 3.3 31 42-74 108-138 (140)
389 COG1747 Uncharacterized N-term 69.2 1.1E+02 0.0023 29.2 23.8 181 240-431 62-249 (711)
390 KOG2471 TPR repeat-containing 68.5 1.1E+02 0.0023 28.9 14.6 40 151-190 29-68 (696)
391 PF14689 SPOB_a: Sensor_kinase 68.4 14 0.00031 23.2 4.2 25 69-93 28-52 (62)
392 PRK09687 putative lyase; Provi 68.2 83 0.0018 27.6 25.8 138 313-467 140-278 (280)
393 PF11846 DUF3366: Domain of un 67.7 35 0.00076 27.8 7.6 36 452-489 140-175 (193)
394 COG0735 Fur Fe2+/Zn2+ uptake r 67.5 41 0.00088 25.9 7.3 66 15-81 7-72 (145)
395 KOG1586 Protein required for f 67.1 75 0.0016 26.6 17.6 18 186-203 166-183 (288)
396 PF14689 SPOB_a: Sensor_kinase 67.0 18 0.00039 22.8 4.5 25 459-483 26-50 (62)
397 PF09670 Cas_Cas02710: CRISPR- 65.6 1.1E+02 0.0024 28.3 11.0 56 37-93 139-198 (379)
398 COG2909 MalT ATP-dependent tra 65.0 1.7E+02 0.0037 30.0 28.1 322 47-376 299-684 (894)
399 PF12862 Apc5: Anaphase-promot 65.0 35 0.00076 23.7 6.2 18 325-342 51-68 (94)
400 KOG1308 Hsp70-interacting prot 64.2 6.6 0.00014 34.5 2.7 117 362-483 125-242 (377)
401 PF11817 Foie-gras_1: Foie gra 63.7 40 0.00086 28.8 7.4 56 110-165 184-244 (247)
402 PF08311 Mad3_BUB1_I: Mad3/BUB 63.5 60 0.0013 24.2 8.0 43 157-199 81-124 (126)
403 PF04190 DUF410: Protein of un 63.4 99 0.0022 26.7 18.2 109 6-129 2-115 (260)
404 KOG4507 Uncharacterized conser 61.6 1.6E+02 0.0035 28.6 12.2 88 363-451 619-706 (886)
405 KOG2297 Predicted translation 61.3 1.1E+02 0.0025 26.7 13.6 19 175-193 322-340 (412)
406 KOG4642 Chaperone-dependent E3 61.2 1E+02 0.0022 26.0 10.8 119 324-447 19-143 (284)
407 COG5108 RPO41 Mitochondrial DN 60.0 56 0.0012 32.0 8.0 75 391-468 33-115 (1117)
408 PF09670 Cas_Cas02710: CRISPR- 59.9 1.5E+02 0.0032 27.5 11.3 55 324-380 140-198 (379)
409 PF04762 IKI3: IKI3 family; I 58.8 1.1E+02 0.0023 32.5 10.6 30 209-238 812-843 (928)
410 PRK11619 lytic murein transgly 58.4 2.1E+02 0.0046 28.9 39.2 252 108-378 103-373 (644)
411 KOG4642 Chaperone-dependent E3 57.9 1.2E+02 0.0025 25.7 11.3 86 4-93 20-107 (284)
412 PRK10564 maltose regulon perip 57.8 21 0.00045 31.0 4.6 42 26-67 253-295 (303)
413 PF10366 Vps39_1: Vacuolar sor 57.1 71 0.0015 23.0 6.9 27 423-449 41-67 (108)
414 PF02184 HAT: HAT (Half-A-TPR) 57.0 28 0.00061 18.4 3.5 23 472-496 3-25 (32)
415 PF08311 Mad3_BUB1_I: Mad3/BUB 56.4 82 0.0018 23.5 8.1 43 369-411 81-124 (126)
416 smart00386 HAT HAT (Half-A-TPR 56.2 26 0.00056 17.7 3.9 15 9-23 2-16 (33)
417 PRK13184 pknD serine/threonine 56.1 2.7E+02 0.0059 29.5 26.3 93 2-97 483-585 (932)
418 PRK10941 hypothetical protein; 56.0 1.4E+02 0.003 26.0 10.4 78 424-502 184-262 (269)
419 PF11817 Foie-gras_1: Foie gra 55.8 71 0.0015 27.3 7.6 59 143-201 182-245 (247)
420 PF09986 DUF2225: Uncharacteri 55.4 1.2E+02 0.0026 25.2 11.6 64 423-486 120-195 (214)
421 KOG0376 Serine-threonine phosp 55.2 36 0.00079 31.7 5.9 106 358-468 11-117 (476)
422 KOG4521 Nuclear pore complex, 54.9 3E+02 0.0065 29.6 15.0 126 67-196 986-1124(1480)
423 PRK11639 zinc uptake transcrip 54.5 1.1E+02 0.0023 24.4 7.8 62 20-82 17-78 (169)
424 KOG2908 26S proteasome regulat 54.2 1.6E+02 0.0035 26.4 9.1 54 361-414 85-143 (380)
425 PF14561 TPR_20: Tetratricopep 54.2 70 0.0015 22.1 8.3 31 313-343 20-50 (90)
426 PRK10564 maltose regulon perip 53.7 33 0.00072 29.9 5.1 30 460-489 261-290 (303)
427 PF13762 MNE1: Mitochondrial s 53.6 1E+02 0.0022 23.7 10.5 47 457-503 80-127 (145)
428 KOG0686 COP9 signalosome, subu 52.9 1.9E+02 0.0041 26.7 12.9 61 176-236 152-214 (466)
429 KOG0686 COP9 signalosome, subu 51.7 2E+02 0.0043 26.6 13.2 166 210-379 151-332 (466)
430 PF09477 Type_III_YscG: Bacter 51.6 88 0.0019 22.4 9.2 79 294-381 21-99 (116)
431 PRK09857 putative transposase; 51.6 1.5E+02 0.0033 26.2 9.0 30 461-490 245-274 (292)
432 KOG4567 GTPase-activating prot 50.8 1.1E+02 0.0025 26.8 7.6 44 371-414 263-306 (370)
433 KOG2908 26S proteasome regulat 50.5 1.3E+02 0.0028 26.9 8.1 77 116-192 87-175 (380)
434 COG0735 Fur Fe2+/Zn2+ uptake r 50.5 98 0.0021 23.8 6.9 46 163-209 10-55 (145)
435 KOG2034 Vacuolar sorting prote 50.0 3.1E+02 0.0068 28.3 22.9 275 2-306 397-688 (911)
436 KOG3807 Predicted membrane pro 49.1 1.1E+02 0.0024 27.1 7.4 19 326-344 286-304 (556)
437 PF04097 Nic96: Nup93/Nic96; 49.1 2.9E+02 0.0063 27.7 29.5 29 280-308 325-356 (613)
438 PF14669 Asp_Glu_race_2: Putat 48.6 1.5E+02 0.0032 24.1 14.7 26 283-308 136-161 (233)
439 PF10366 Vps39_1: Vacuolar sor 47.6 1E+02 0.0023 22.2 7.6 27 388-414 41-67 (108)
440 KOG0292 Vesicle coat complex C 47.3 2.8E+02 0.0061 28.7 10.6 130 4-168 653-782 (1202)
441 PF14669 Asp_Glu_race_2: Putat 46.8 1.6E+02 0.0034 23.9 14.7 25 213-237 136-160 (233)
442 PF15297 CKAP2_C: Cytoskeleton 46.6 2.2E+02 0.0048 25.7 9.5 44 458-501 142-185 (353)
443 PHA02875 ankyrin repeat protei 46.5 2.5E+02 0.0055 26.3 13.6 78 113-198 8-89 (413)
444 PF09454 Vps23_core: Vps23 cor 45.8 71 0.0015 20.4 4.5 49 419-468 6-54 (65)
445 smart00638 LPD_N Lipoprotein N 45.7 3.2E+02 0.0069 27.2 24.0 63 103-170 309-371 (574)
446 KOG1308 Hsp70-interacting prot 44.8 18 0.00039 31.9 2.3 120 324-449 123-243 (377)
447 PHA02875 ankyrin repeat protei 44.4 2.7E+02 0.0059 26.1 15.5 77 219-303 9-89 (413)
448 PRK14956 DNA polymerase III su 44.4 3E+02 0.0065 26.5 12.2 32 388-419 250-281 (484)
449 PF14561 TPR_20: Tetratricopep 43.7 1.1E+02 0.0023 21.2 8.6 55 278-332 21-75 (90)
450 PF11123 DNA_Packaging_2: DNA 43.7 91 0.002 20.4 5.2 32 294-327 12-43 (82)
451 PF02847 MA3: MA3 domain; Int 43.3 90 0.002 22.5 5.6 23 110-132 8-30 (113)
452 KOG4567 GTPase-activating prot 43.3 2.4E+02 0.0051 25.0 9.4 43 265-307 264-306 (370)
453 KOG0687 26S proteasome regulat 42.5 2.5E+02 0.0054 25.1 13.0 135 275-413 66-208 (393)
454 PF07575 Nucleopor_Nup85: Nup8 42.4 3.6E+02 0.0077 26.8 18.1 26 29-55 149-174 (566)
455 PF13934 ELYS: Nuclear pore co 42.2 2.1E+02 0.0046 24.1 13.1 172 191-373 27-198 (226)
456 PRK09462 fur ferric uptake reg 41.8 1.6E+02 0.0035 22.7 7.3 63 18-81 6-69 (148)
457 PF10475 DUF2450: Protein of u 41.4 1.5E+02 0.0031 26.3 7.5 117 32-161 101-219 (291)
458 KOG0376 Serine-threonine phosp 41.3 94 0.002 29.2 6.3 106 322-433 11-117 (476)
459 COG5108 RPO41 Mitochondrial DN 41.2 3.2E+02 0.007 27.2 9.7 75 356-433 33-115 (1117)
460 cd07153 Fur_like Ferric uptake 40.9 82 0.0018 22.9 5.1 48 34-81 5-52 (116)
461 PF02607 B12-binding_2: B12 bi 40.1 41 0.0009 22.3 3.1 37 434-470 14-50 (79)
462 PF09454 Vps23_core: Vps23 cor 39.9 78 0.0017 20.2 4.0 48 384-432 6-53 (65)
463 PF10475 DUF2450: Protein of u 39.6 1.8E+02 0.004 25.7 7.8 23 284-306 132-154 (291)
464 PF14929 TAF1_subA: TAF RNA Po 38.5 4E+02 0.0086 26.2 22.2 151 256-411 321-480 (547)
465 PF00244 14-3-3: 14-3-3 protei 38.4 2.5E+02 0.0054 23.9 9.7 58 250-307 7-65 (236)
466 PF12968 DUF3856: Domain of Un 38.1 1.6E+02 0.0036 21.7 7.3 70 31-100 9-91 (144)
467 KOG1839 Uncharacterized protei 38.0 2.1E+02 0.0046 30.9 8.8 125 6-130 944-1083(1236)
468 PF04097 Nic96: Nup93/Nic96; 37.9 4.4E+02 0.0095 26.5 22.6 224 140-380 113-356 (613)
469 PRK09857 putative transposase; 37.4 2.9E+02 0.0064 24.4 8.8 65 390-455 210-274 (292)
470 PF14853 Fis1_TPR_C: Fis1 C-te 37.3 96 0.0021 18.8 5.5 33 33-67 5-37 (53)
471 PF04910 Tcf25: Transcriptiona 37.2 3.3E+02 0.0073 25.0 15.7 65 420-484 99-167 (360)
472 PF01475 FUR: Ferric uptake re 36.9 81 0.0018 23.1 4.5 51 31-81 9-59 (120)
473 PRK11639 zinc uptake transcrip 36.8 2.1E+02 0.0046 22.7 7.0 24 188-211 39-62 (169)
474 KOG0687 26S proteasome regulat 36.8 3.1E+02 0.0068 24.5 12.9 97 351-449 104-209 (393)
475 PF09986 DUF2225: Uncharacteri 36.7 2.5E+02 0.0054 23.4 11.2 63 389-451 121-195 (214)
476 cd00280 TRFH Telomeric Repeat 36.2 2.3E+02 0.005 22.9 11.9 66 402-470 85-157 (200)
477 PF09477 Type_III_YscG: Bacter 36.1 1.7E+02 0.0036 21.1 9.5 79 366-451 21-99 (116)
478 KOG0292 Vesicle coat complex C 35.7 2.7E+02 0.0058 28.8 8.6 129 325-484 653-781 (1202)
479 PF02847 MA3: MA3 domain; Int 35.6 1.7E+02 0.0036 21.0 7.4 20 393-412 9-28 (113)
480 PF04090 RNA_pol_I_TF: RNA pol 35.2 2.5E+02 0.0055 23.0 7.6 64 421-484 41-104 (199)
481 PF07064 RIC1: RIC1; InterPro 34.7 3E+02 0.0066 23.8 11.5 153 1-171 89-252 (258)
482 PF09868 DUF2095: Uncharacteri 34.6 1.4E+02 0.0031 21.5 4.9 24 463-486 68-91 (128)
483 KOG4279 Serine/threonine prote 34.3 5.2E+02 0.011 26.4 16.7 176 246-451 203-396 (1226)
484 KOG3364 Membrane protein invol 32.9 2.2E+02 0.0048 21.6 9.0 64 279-342 32-98 (149)
485 KOG3807 Predicted membrane pro 32.8 3.6E+02 0.0079 24.1 11.8 57 284-340 280-336 (556)
486 cd07153 Fur_like Ferric uptake 32.7 1.3E+02 0.0028 21.8 5.0 43 146-188 7-49 (116)
487 COG5071 RPN5 26S proteasome re 32.6 3.5E+02 0.0076 23.9 14.5 74 286-359 178-256 (439)
488 PF11768 DUF3312: Protein of u 32.5 4.8E+02 0.01 25.4 11.3 22 319-340 412-433 (545)
489 PF10255 Paf67: RNA polymerase 31.7 4.4E+02 0.0095 24.7 12.2 67 31-97 124-197 (404)
490 KOG1498 26S proteasome regulat 31.6 4.2E+02 0.0091 24.5 14.5 97 284-380 136-241 (439)
491 PF12069 DUF3549: Protein of u 31.1 4E+02 0.0088 24.1 14.6 91 106-203 168-259 (340)
492 PF07678 A2M_comp: A-macroglob 31.1 3.4E+02 0.0073 23.2 8.5 46 10-57 115-160 (246)
493 cd08819 CARD_MDA5_2 Caspase ac 30.8 1.8E+02 0.0039 20.0 7.2 14 435-448 50-63 (88)
494 COG5116 RPN2 26S proteasome re 30.3 4.3E+02 0.0093 25.9 8.6 180 299-486 43-238 (926)
495 PF03745 DUF309: Domain of unk 30.1 1.5E+02 0.0032 18.7 5.6 47 115-161 10-61 (62)
496 PF08542 Rep_fac_C: Replicatio 30.0 1.4E+02 0.0031 20.3 4.6 49 419-469 3-51 (89)
497 KOG3677 RNA polymerase I-assoc 29.3 4.8E+02 0.01 24.4 9.8 61 105-166 236-299 (525)
498 COG5187 RPN7 26S proteasome re 29.2 4E+02 0.0086 23.4 13.2 173 261-435 55-241 (412)
499 PRK09462 fur ferric uptake reg 29.0 2.7E+02 0.0058 21.4 6.9 33 189-221 32-64 (148)
500 PF04910 Tcf25: Transcriptiona 28.9 4.6E+02 0.01 24.1 20.6 56 358-413 110-166 (360)
No 1
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=6.1e-71 Score=540.13 Aligned_cols=492 Identities=16% Similarity=0.228 Sum_probs=463.4
Q ss_pred ccccccCcHHHHHHHHHHHHhCCC-CCChHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCh
Q 010342 2 DQLCGLSRVGEAHKLFFDMKSRGH-VPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDV 80 (512)
Q Consensus 2 ~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~ 80 (512)
+.|++.|++++|.++|++|.+.|+ .|+...++.++..|.+.|.+++|..+|+.|.. ||..+|+.++.+|++.|++
T Consensus 378 ~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~LL~a~~k~g~~ 453 (1060)
T PLN03218 378 NRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNMLMSVCASSQDI 453 (1060)
T ss_pred HHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHHHHHHHHhCcCH
Confidence 456788999999999999999985 56777888999999999999999999999975 9999999999999999999
Q ss_pred hhHHHHHHHHHHHhhhcCCCCcchHhHHHHHHHHHccCChhHHHHHHHhcCCCCCCCcchhHHHHHHHHHhcCChhhHHH
Q 010342 81 ERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASR 160 (512)
Q Consensus 81 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 160 (512)
+.|.+++.++.+ . +..|+..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.+
T Consensus 454 e~A~~lf~~M~~----~-Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~ 528 (1060)
T PLN03218 454 DGALRVLRLVQE----A-GLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFG 528 (1060)
T ss_pred HHHHHHHHHHHH----c-CCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHH
Confidence 999887666543 3 89999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCCCcchHHHHHHHHhccCchhHHHHHHHHHHh--CCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHhC
Q 010342 161 VVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQ--FGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSK 238 (512)
Q Consensus 161 ~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 238 (512)
+|+.|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.. .|+.||..+|+.++.+|++.|++++|.++|+.|.+.
T Consensus 529 lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~ 608 (1060)
T PLN03218 529 AYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEY 608 (1060)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 999999999999999999999999999999999999999986 578999999999999999999999999999999999
Q ss_pred CCCCCcccHHHHHHHHHccCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcHHHH
Q 010342 239 KDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTF 318 (512)
Q Consensus 239 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 318 (512)
+..++..+|+.++.+|++.|++++|..+|+.|.+.|+.||..+|+.++.+|++.|++++|.++|++|.+.+. .|+..+|
T Consensus 609 gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~-~pd~~ty 687 (1060)
T PLN03218 609 NIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGI-KLGTVSY 687 (1060)
T ss_pred CCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC-CCCHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999886 8999999
Q ss_pred HHHHHHHhhcCCHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHh
Q 010342 319 TTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCE 398 (512)
Q Consensus 319 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 398 (512)
+.++.+|++.|++++|.++|++ |...++.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|.+
T Consensus 688 nsLI~ay~k~G~~eeA~~lf~e-M~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k 766 (1060)
T PLN03218 688 SSLMGACSNAKNWKKALELYED-IKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASER 766 (1060)
T ss_pred HHHHHHHHhCCCHHHHHHHHHH-HHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 9999999999999999999988 457789999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHh----c-------------------CCHHHHHHHHHHHHHCCCCCC
Q 010342 399 SNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCR----S-------------------GKIHEAVHFLYELVDSGVTPN 455 (512)
Q Consensus 399 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~-------------------g~~~~a~~~~~~~~~~~~~p~ 455 (512)
.|++++|.+++++|.+.|+.||..+|+.++..|.+ . +..++|..+|++|++.|+.||
T Consensus 767 ~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd 846 (1060)
T PLN03218 767 KDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPT 846 (1060)
T ss_pred CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCC
Confidence 99999999999999999999999999999876432 1 124679999999999999999
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHhhccC
Q 010342 456 IVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNR 504 (512)
Q Consensus 456 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 504 (512)
..||+.++.+++..+....+..+++.|...+..|+..+|++|++.+++.
T Consensus 847 ~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~ 895 (1060)
T PLN03218 847 MEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY 895 (1060)
T ss_pred HHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC
Confidence 9999999988888999999999999998888999999999999998653
No 2
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=8.7e-69 Score=524.99 Aligned_cols=478 Identities=14% Similarity=0.199 Sum_probs=450.3
Q ss_pred ccccccCcHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChh
Q 010342 2 DQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVE 81 (512)
Q Consensus 2 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~ 81 (512)
++|.+.|.+++|..+|+.|.. ||..+|+.++.+|++.|+++.|.++|++|.+.|+.||..+|+.+|.+|++.|+.+
T Consensus 414 ~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd 489 (1060)
T PLN03218 414 KACKKQRAVKEAFRFAKLIRN----PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVD 489 (1060)
T ss_pred HHHHHCCCHHHHHHHHHHcCC----CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHH
Confidence 357788999999999999875 8999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhhhcCCCCcchHhHHHHHHHHHccCChhHHHHHHHhcCCCCCCCcchhHHHHHHHHHhcCChhhHHHH
Q 010342 82 RANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRV 161 (512)
Q Consensus 82 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 161 (512)
.|.+++.++. .. ++.|+..+|+.+|.+|++.|++++|.++|++|...+..||..+|+.+|.+|++.|++++|.++
T Consensus 490 ~A~~vf~eM~----~~-Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~l 564 (1060)
T PLN03218 490 AMFEVFHEMV----NA-GVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDV 564 (1060)
T ss_pred HHHHHHHHHH----Hc-CCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 9988665554 33 889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHH--cCCCCCcchHHHHHHHHhccCchhHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHhCC
Q 010342 162 VYVMRK--RGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKK 239 (512)
Q Consensus 162 ~~~~~~--~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 239 (512)
|++|.. .|+.||..+|+.++.+|++.|++++|.++|++|.+.|+.|+..+|+.+|.+|++.|++++|.++|+.|...+
T Consensus 565 f~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~G 644 (1060)
T PLN03218 565 LAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKG 644 (1060)
T ss_pred HHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Confidence 999986 678999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcccHHHHHHHHHccCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHH
Q 010342 240 DVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFT 319 (512)
Q Consensus 240 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 319 (512)
..|+..+|+.++.+|++.|+.++|.+++..|.+.|+.|+..+|+.++.+|++.|++++|.++|++|...+. .|+..+|+
T Consensus 645 v~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~-~PdvvtyN 723 (1060)
T PLN03218 645 VKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKL-RPTVSTMN 723 (1060)
T ss_pred CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC-CCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999998775 89999999
Q ss_pred HHHHHHhhcCCHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHh-
Q 010342 320 TIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCE- 398 (512)
Q Consensus 320 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~- 398 (512)
.++.+|++.|++++|.++|.+ |...|+.||..+|+.++.+|++.|+++.|..++.+|.+.|+.||..+|+.++..|.+
T Consensus 724 ~LI~gy~k~G~~eeAlelf~e-M~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~ 802 (1060)
T PLN03218 724 ALITALCEGNQLPKALEVLSE-MKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRR 802 (1060)
T ss_pred HHHHHHHHCCCHHHHHHHHHH-HHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence 999999999999999999998 558899999999999999999999999999999999999999999999999876532
Q ss_pred ---c-------------------CCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh
Q 010342 399 ---S-------------------NQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNI 456 (512)
Q Consensus 399 ---~-------------------g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~ 456 (512)
+ +..+.|..+|++|.+.|+.||..+|+.++.++++.+..+.+..+++.|...+..|+.
T Consensus 803 y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~ 882 (1060)
T PLN03218 803 FEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQ 882 (1060)
T ss_pred HHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcch
Confidence 1 124679999999999999999999999998888999999999999999888889999
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChH
Q 010342 457 VCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAV 492 (512)
Q Consensus 457 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~ 492 (512)
.+|++++.++.+. .++|..++++|...|+.|+..
T Consensus 883 ~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 883 SNLSTLVDGFGEY--DPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred hhhHHHHHhhccC--hHHHHHHHHHHHHcCCCCCcc
Confidence 9999999998432 468999999999999999875
No 3
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=7.1e-69 Score=536.45 Aligned_cols=482 Identities=18% Similarity=0.257 Sum_probs=373.9
Q ss_pred ccccccCcHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChh
Q 010342 2 DQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVE 81 (512)
Q Consensus 2 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~ 81 (512)
+.|.+.|+++.|.++|++|.+ ||..+||.+|.+|++.|++++|+++|++|...|+.||..||+.++++|...++..
T Consensus 129 ~~~~~~g~~~~A~~~f~~m~~----~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~ 204 (857)
T PLN03077 129 SMFVRFGELVHAWYVFGKMPE----RDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLA 204 (857)
T ss_pred HHHHhCCChHHHHHHHhcCCC----CCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchh
Confidence 467888999999999998864 5888999999999999999999999999988888999999999998888888888
Q ss_pred hHHHHHHHHHHHhhhcCCCCcchHhHHHHHHHHHccCChhHHHHHHHhcCCCCCCCcchhHHHHHHHHHhcCChhhHHHH
Q 010342 82 RANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRV 161 (512)
Q Consensus 82 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 161 (512)
.+.+++..+.+. +..|+..++++|+..|++.|++++|.++|++|.. ||..+|+++|.+|++.|++++|.++
T Consensus 205 ~~~~~~~~~~~~-----g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~----~d~~s~n~li~~~~~~g~~~eAl~l 275 (857)
T PLN03077 205 RGREVHAHVVRF-----GFELDVDVVNALITMYVKCGDVVSARLVFDRMPR----RDCISWNAMISGYFENGECLEGLEL 275 (857)
T ss_pred hHHHHHHHHHHc-----CCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC----CCcchhHHHHHHHHhCCCHHHHHHH
Confidence 887777665543 7778888888888888888888888888888875 6677888888888888888888888
Q ss_pred HHHHHHcCCCCCcchHHHHHHHHhccCchhHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCC
Q 010342 162 VYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDV 241 (512)
Q Consensus 162 ~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 241 (512)
|++|...|+.||..||+.++.+|++.|+.+.+.+++..|.+.|+.||..+|+.++.+|++.|++++|.++|+.|..
T Consensus 276 f~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~---- 351 (857)
T PLN03077 276 FFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET---- 351 (857)
T ss_pred HHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC----
Confidence 8888888888888888888888888888888888888888888888888888888888888888888888887752
Q ss_pred CCcccHHHHHHHHHccCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHH
Q 010342 242 DRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTI 321 (512)
Q Consensus 242 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 321 (512)
++..+|+.++.+|++.|++++|.++|+.|.+.|+.||..+|+.++.+|++.|+++.|.++++.+.+.+. .++..+++.+
T Consensus 352 ~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~-~~~~~~~n~L 430 (857)
T PLN03077 352 KDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGL-ISYVVVANAL 430 (857)
T ss_pred CCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCC-CcchHHHHHH
Confidence 456678888888888888888888888887777777777777777777777777777777777776664 6666667777
Q ss_pred HHHHhhcCCHHHHHHHHHhhcc-----------------------------cCCCCCChhhHHHHHHHHHccCCHHHHHH
Q 010342 322 IFGLLNVGRIQEALNLLYQVMP-----------------------------QRGYSPGIVTYNAVLRGLFRLRRVEEAKE 372 (512)
Q Consensus 322 ~~~~~~~~~~~~a~~~~~~~~~-----------------------------~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 372 (512)
+.+|++.|++++|.++|+++.. ..++.||..||+.++.+|++.|+.+.+.+
T Consensus 431 i~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~ 510 (857)
T PLN03077 431 IEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKE 510 (857)
T ss_pred HHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHH
Confidence 7777666666666666655321 01234444444444444444444444444
Q ss_pred HHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 010342 373 VFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGV 452 (512)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 452 (512)
++..+.+.|+.++..+++.|+++|.+.|++++|.++|+.+ .+|..+|++++.+|++.|+.++|.++|++|.+.|+
T Consensus 511 i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~ 585 (857)
T PLN03077 511 IHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGV 585 (857)
T ss_pred HHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 4444444444444445555556666666666666666654 56778888888888888888888888888888888
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHH-HCCCCCChHHHHHHHHhhccCCC
Q 010342 453 TPNIVCYNVVIDGACKLSMKREAYQILREMR-KNGLNPDAVTWRILDKLHGNRGN 506 (512)
Q Consensus 453 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~-~~~~~p~~~~~~~l~~~~~~~g~ 506 (512)
.||..||+.++.+|.+.|++++|.++|+.|. +.|+.|+..+|++++++|++.|+
T Consensus 586 ~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~ 640 (857)
T PLN03077 586 NPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGK 640 (857)
T ss_pred CCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCC
Confidence 8888888888888888888888888888888 67888888888888888888885
No 4
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=7.4e-68 Score=529.12 Aligned_cols=476 Identities=18% Similarity=0.227 Sum_probs=428.8
Q ss_pred ccccccCcHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChh
Q 010342 2 DQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVE 81 (512)
Q Consensus 2 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~ 81 (512)
.+|.+.+.++.|..++..+.+.+..++...+|.++..|++.|+.+.|.++|++|.+ ||..+|+.+|.+|.+.|+++
T Consensus 94 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~~f~~m~~----~d~~~~n~li~~~~~~g~~~ 169 (857)
T PLN03077 94 RLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPE----RDLFSWNVLVGGYAKAGYFD 169 (857)
T ss_pred HHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhCCChHHHHHHHhcCCC----CCeeEHHHHHHHHHhCCCHH
Confidence 45678899999999999999999999999999999999999999999999999974 89999999999999999999
Q ss_pred hHHHHHHHHHHHhhhcCCCCcchHhHHHHHHHHHccCChhHHHHHHHhcCCCCCCCcchhHHHHHHHHHhcCChhhHHHH
Q 010342 82 RANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRV 161 (512)
Q Consensus 82 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 161 (512)
+|.+++.++. .. ++.|+..||+.++++|+..++++.+.+++..+.+.|..|+..+++.++.+|++.|+++.|.++
T Consensus 170 ~A~~~f~~M~----~~-g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~l 244 (857)
T PLN03077 170 EALCLYHRML----WA-GVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLV 244 (857)
T ss_pred HHHHHHHHHH----Hc-CCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHH
Confidence 9988766554 33 899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCCCcchHHHHHHHHhccCchhHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCC
Q 010342 162 VYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDV 241 (512)
Q Consensus 162 ~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 241 (512)
|+.|.. ||..+|+.+|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.+.+++..+...+..
T Consensus 245 f~~m~~----~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~ 320 (857)
T PLN03077 245 FDRMPR----RDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFA 320 (857)
T ss_pred HhcCCC----CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCc
Confidence 999974 6999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccHHHHHHHHHccCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHH
Q 010342 242 DRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTI 321 (512)
Q Consensus 242 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 321 (512)
++..+|+.++.+|++.|++++|.++|+.|. .||..+|+.++.+|.+.|++++|+++|++|.+.+. .||..+|+.+
T Consensus 321 ~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~-~Pd~~t~~~l 395 (857)
T PLN03077 321 VDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNV-SPDEITIASV 395 (857)
T ss_pred cchHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCC-CCCceeHHHH
Confidence 999999999999999999999999999986 57899999999999999999999999999998876 8999999999
Q ss_pred HHHHhhcCCHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCC
Q 010342 322 IFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQ 401 (512)
Q Consensus 322 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 401 (512)
+.+|++.|+.+.|.+++.. +...|+.|+..+|+.++.+|++.|++++|.++|++|.+ +|..+|+.++.+|.+.|+
T Consensus 396 l~a~~~~g~~~~a~~l~~~-~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~vs~~~mi~~~~~~g~ 470 (857)
T PLN03077 396 LSACACLGDLDVGVKLHEL-AERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE----KDVISWTSIIAGLRLNNR 470 (857)
T ss_pred HHHHhccchHHHHHHHHHH-HHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHCCC
Confidence 9999999999999999987 45789999999999999999999999999988888754 455666666666666666
Q ss_pred HHHHHHHHHHhhcCCCCCCHHhHHHHH-----------------------------------HHHHhcCCHHHHHHHHHH
Q 010342 402 LDEAKRFWDDIVWPSNIHDNYVYAAMI-----------------------------------KGLCRSGKIHEAVHFLYE 446 (512)
Q Consensus 402 ~~~a~~~~~~~~~~~~~~~~~~~~~l~-----------------------------------~~~~~~g~~~~a~~~~~~ 446 (512)
.++|..+|++|.. +..||..+|+.++ .+|+++|++++|.++|+.
T Consensus 471 ~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~ 549 (857)
T PLN03077 471 CFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNS 549 (857)
T ss_pred HHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHh
Confidence 6666666666653 3556665555555 555555566666655555
Q ss_pred HHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHhhccCCC
Q 010342 447 LVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRGN 506 (512)
Q Consensus 447 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~ 506 (512)
+ .||..+|+.++.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|++.|.
T Consensus 550 ~-----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~ 604 (857)
T PLN03077 550 H-----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGM 604 (857)
T ss_pred c-----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcCh
Confidence 4 578889999999999999999999999999999999999999999999999885
No 5
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=5.8e-65 Score=496.45 Aligned_cols=464 Identities=17% Similarity=0.197 Sum_probs=439.6
Q ss_pred ccccccCcHHHHHHHHHHHHhCC-CCCChHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCh
Q 010342 2 DQLCGLSRVGEAHKLFFDMKSRG-HVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDV 80 (512)
Q Consensus 2 ~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~ 80 (512)
..|.+.|++++|.++|+.|...+ ..||..+|+.++.+|.+.++++.+.+++..|.+.|+.||..+|+.++.+|.+.|++
T Consensus 95 ~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~ 174 (697)
T PLN03081 95 EKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGML 174 (697)
T ss_pred HHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCH
Confidence 45788999999999999999864 68999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHhhhcCCCCcchHhHHHHHHHHHccCChhHHHHHHHhcCCCCCCCcchhHHHHHHHHHhcCChhhHHH
Q 010342 81 ERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASR 160 (512)
Q Consensus 81 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 160 (512)
+.|.+++. +|+ .|+..+|+.++.+|++.|++++|.++|++|.+.+..|+..+|+.++.++++.|..+.+.+
T Consensus 175 ~~A~~lf~----~m~-----~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~ 245 (697)
T PLN03081 175 IDARRLFD----EMP-----ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQ 245 (697)
T ss_pred HHHHHHHh----cCC-----CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHH
Confidence 99977654 443 378899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCCCcchHHHHHHHHhccCchhHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHhCCC
Q 010342 161 VVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240 (512)
Q Consensus 161 ~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 240 (512)
++..+.+.|+.||..+|+.++.+|++.|++++|.++|++|. .+|..+|+.++.+|++.|++++|.++|++|.+.+.
T Consensus 246 l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~ 321 (697)
T PLN03081 246 LHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP----EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGV 321 (697)
T ss_pred HHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC----CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999985 57899999999999999999999999999999999
Q ss_pred CCCcccHHHHHHHHHccCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHH
Q 010342 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTT 320 (512)
Q Consensus 241 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 320 (512)
.|+..+|+.++.+|++.|+.++|.+++..|.+.|+.||..+++.++.+|++.|++++|.++|++|. .||..+|+.
T Consensus 322 ~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~-----~~d~~t~n~ 396 (697)
T PLN03081 322 SIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP-----RKNLISWNA 396 (697)
T ss_pred CCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC-----CCCeeeHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999996 578999999
Q ss_pred HHHHHhhcCCHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHh-CCCCCChHhHHHHHHHHHhc
Q 010342 321 IIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLG-IGVVADSTTYAIVIDGLCES 399 (512)
Q Consensus 321 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~ 399 (512)
++.+|++.|+.++|.++|++| ...|+.||..||+.++.+|++.|..++|.++|+.|.+ .|+.|+..+|+.++++|++.
T Consensus 397 lI~~y~~~G~~~~A~~lf~~M-~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~ 475 (697)
T PLN03081 397 LIAGYGNHGRGTKAVEMFERM-IAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGRE 475 (697)
T ss_pred HHHHHHHcCCHHHHHHHHHHH-HHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhc
Confidence 999999999999999999994 5889999999999999999999999999999999986 69999999999999999999
Q ss_pred CCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-ChhhHHHHHHHHHhcCCHHHHHHH
Q 010342 400 NQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTP-NIVCYNVVIDGACKLSMKREAYQI 478 (512)
Q Consensus 400 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~ 478 (512)
|++++|.++++++ +..|+..+|++|+.+|...|+++.|..+++++.+. .| +..+|..++..|++.|++++|.++
T Consensus 476 G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~--~p~~~~~y~~L~~~y~~~G~~~~A~~v 550 (697)
T PLN03081 476 GLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGM--GPEKLNNYVVLLNLYNSSGRQAEAAKV 550 (697)
T ss_pred CCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCC--CCCCCcchHHHHHHHHhCCCHHHHHHH
Confidence 9999999999886 36899999999999999999999999999999765 44 577999999999999999999999
Q ss_pred HHHHHHCCCCC
Q 010342 479 LREMRKNGLNP 489 (512)
Q Consensus 479 ~~~m~~~~~~p 489 (512)
++.|.+.|+..
T Consensus 551 ~~~m~~~g~~k 561 (697)
T PLN03081 551 VETLKRKGLSM 561 (697)
T ss_pred HHHHHHcCCcc
Confidence 99999998753
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.1e-62 Score=480.53 Aligned_cols=458 Identities=17% Similarity=0.221 Sum_probs=431.3
Q ss_pred CCChHhHHHHHHHHHhcCChhHHHHHHHHHHhCC-CCCChhhHHHHHHHHHhcCChhhHHHHHHHHHHHhhhcCCCCcch
Q 010342 26 VPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCG-VLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNN 104 (512)
Q Consensus 26 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 104 (512)
.++..+|+.+|..+.+.|++++|+++|+.|...+ +.||..+|+.++.+|.+.++.+.+.+++..+.+. +..|+.
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~-----g~~~~~ 158 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESS-----GFEPDQ 158 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh-----CCCcch
Confidence 3456689999999999999999999999998864 7899999999999999999999998877655443 789999
Q ss_pred HhHHHHHHHHHccCChhHHHHHHHhcCCCCCCCcchhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCcchHHHHHHHH
Q 010342 105 AAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGL 184 (512)
Q Consensus 105 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~ 184 (512)
.+|+.++..|++.|++++|.++|++|.+ |+..+|+.++.+|++.|++++|.++|++|.+.|+.|+..+|+.++.+|
T Consensus 159 ~~~n~Li~~y~k~g~~~~A~~lf~~m~~----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~ 234 (697)
T PLN03081 159 YMMNRVLLMHVKCGMLIDARRLFDEMPE----RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRAS 234 (697)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHhcCCC----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHH
Confidence 9999999999999999999999999976 788999999999999999999999999999999999999999999999
Q ss_pred hccCchhHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChhhHH
Q 010342 185 CKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELL 264 (512)
Q Consensus 185 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 264 (512)
+..|..+.+.+++..+.+.|+.||..+|+.++.+|++.|++++|.++|+.|.. ++..+|+.++.+|++.|++++|.
T Consensus 235 ~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~ 310 (697)
T PLN03081 235 AGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEAL 310 (697)
T ss_pred hcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999853 46789999999999999999999
Q ss_pred HHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhhccc
Q 010342 265 NVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQ 344 (512)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 344 (512)
++|++|.+.|+.||..||+.++.+|++.|++++|.+++..|.+.+. .|+..+++.++.+|++.|++++|.++|+++.
T Consensus 311 ~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~-~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~-- 387 (697)
T PLN03081 311 CLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGF-PLDIVANTALVDLYSKWGRMEDARNVFDRMP-- 387 (697)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCC-CCCeeehHHHHHHHHHCCCHHHHHHHHHhCC--
Confidence 9999999999999999999999999999999999999999999886 8999999999999999999999999998853
Q ss_pred CCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhc-CCCCCCHHh
Q 010342 345 RGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVW-PSNIHDNYV 423 (512)
Q Consensus 345 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~ 423 (512)
.||..+|+.+|.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|.+.|.+++|.++|+.|.+ .++.|+..+
T Consensus 388 ---~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~ 464 (697)
T PLN03081 388 ---RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMH 464 (697)
T ss_pred ---CCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccc
Confidence 4799999999999999999999999999999999999999999999999999999999999999975 689999999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-hHHHHHHHHhhc
Q 010342 424 YAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPD-AVTWRILDKLHG 502 (512)
Q Consensus 424 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~ 502 (512)
|+.++++|++.|++++|.+++++| +..|+..+|+.++.+|...|+++.|..+++++.+ +.|+ ..+|..|+++|+
T Consensus 465 y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~--~~p~~~~~y~~L~~~y~ 539 (697)
T PLN03081 465 YACMIELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYG--MGPEKLNNYVVLLNLYN 539 (697)
T ss_pred hHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhC--CCCCCCcchHHHHHHHH
Confidence 999999999999999999998765 5789999999999999999999999999999975 5665 679999999999
Q ss_pred cCCCC
Q 010342 503 NRGND 507 (512)
Q Consensus 503 ~~g~~ 507 (512)
+.|+-
T Consensus 540 ~~G~~ 544 (697)
T PLN03081 540 SSGRQ 544 (697)
T ss_pred hCCCH
Confidence 99863
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=5.5e-32 Score=278.46 Aligned_cols=480 Identities=14% Similarity=0.054 Sum_probs=362.1
Q ss_pred ccCcHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhhHHH
Q 010342 6 GLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANV 85 (512)
Q Consensus 6 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 85 (512)
..|++++|++.|+.+.+..+. +......++..+.+.|++++|..+++++... .++++.++..+...+...|++++|..
T Consensus 409 ~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~ 486 (899)
T TIGR02917 409 SQGDPSEAIADLETAAQLDPE-LGRADLLLILSYLRSGQFDKALAAAKKLEKK-QPDNASLHNLLGAIYLGKGDLAKARE 486 (899)
T ss_pred hCCChHHHHHHHHHHHhhCCc-chhhHHHHHHHHHhcCCHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHHhCCCHHHHHH
Confidence 344444444444444443221 2223344445555555555555555555543 23455667777777777777777777
Q ss_pred HHHHHHHHhhhcCCCCcchHhHHHHHHHHHccCChhHHHHHHHhcCCCCCCCcchhHHHHHHHHHhcCChhhHHHHHHHH
Q 010342 86 LMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVM 165 (512)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 165 (512)
.+.++++..+ .+...+..+...+...|++++|.+.++.+....+ .+..++..+...+.+.|+.++|...++.+
T Consensus 487 ~~~~a~~~~~------~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 559 (899)
T TIGR02917 487 AFEKALSIEP------DFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDP-KNLRAILALAGLYLRTGNEEEAVAWLEKA 559 (899)
T ss_pred HHHHHHhhCC------CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 7766654322 2234556677777777888888887777766543 35566777777788888888888888887
Q ss_pred HHcCCCCCcchHHHHHHHHhccCchhHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCcc
Q 010342 166 RKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTR 245 (512)
Q Consensus 166 ~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 245 (512)
...+. .+...+..++..+...|++++|.++++.+.+.. +.+...|..+...+...|++++|...++.+.+. .+.+..
T Consensus 560 ~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~ 636 (899)
T TIGR02917 560 AELNP-QEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLAL-QPDSAL 636 (899)
T ss_pred HHhCc-cchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCChH
Confidence 76543 255677778888888888888888888887643 556778888888888888888888888888754 344556
Q ss_pred cHHHHHHHHHccCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHH
Q 010342 246 ICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGL 325 (512)
Q Consensus 246 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 325 (512)
.+..+...+...|++++|...++.+.+..+ .+...+..++..+...|++++|..+++.+.... +.+...+..+...+
T Consensus 637 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~ 713 (899)
T TIGR02917 637 ALLLLADAYAVMKNYAKAITSLKRALELKP-DNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH--PKAALGFELEGDLY 713 (899)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--cCChHHHHHHHHHH
Confidence 777888888888889999888888887653 356788888888888899999999998888765 56777888888889
Q ss_pred hhcCCHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHH
Q 010342 326 LNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEA 405 (512)
Q Consensus 326 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 405 (512)
...|++++|...|.+.+.. .|+..++..+..++.+.|++++|...++.+.+.. +.+...+..+...|...|++++|
T Consensus 714 ~~~g~~~~A~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A 789 (899)
T TIGR02917 714 LRQKDYPAAIQAYRKALKR---APSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKA 789 (899)
T ss_pred HHCCCHHHHHHHHHHHHhh---CCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHH
Confidence 9999999999999886643 3555777788888999999999999999988864 66778889999999999999999
Q ss_pred HHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 010342 406 KRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKN 485 (512)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 485 (512)
...|+++.+.. +++..+++.++..+...|+ .+|...++++.+.. +-+..++..+...+...|++++|.++++++.+.
T Consensus 790 ~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~ 866 (899)
T TIGR02917 790 IKHYRTVVKKA-PDNAVVLNNLAWLYLELKD-PRALEYAEKALKLA-PNIPAILDTLGWLLVEKGEADRALPLLRKAVNI 866 (899)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 99999998765 6778889999999999999 88999999998864 335677888999999999999999999999986
Q ss_pred CCCCChHHHHHHHHhhccCCCCC
Q 010342 486 GLNPDAVTWRILDKLHGNRGNDF 508 (512)
Q Consensus 486 ~~~p~~~~~~~l~~~~~~~g~~~ 508 (512)
+ +.+..++..+..++...|+..
T Consensus 867 ~-~~~~~~~~~l~~~~~~~g~~~ 888 (899)
T TIGR02917 867 A-PEAAAIRYHLALALLATGRKA 888 (899)
T ss_pred C-CCChHHHHHHHHHHHHcCCHH
Confidence 5 348889999999999988753
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=1.2e-31 Score=275.94 Aligned_cols=480 Identities=13% Similarity=0.033 Sum_probs=320.0
Q ss_pred cccCcHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhhHH
Q 010342 5 CGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERAN 84 (512)
Q Consensus 5 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 84 (512)
.+.|++++|...++.+.+..+ .+...+..+...+.+.|++++|...|+++.+.. +.+...+..+...+...|++++|.
T Consensus 340 ~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~ 417 (899)
T TIGR02917 340 LRLGRVDEAIATLSPALGLDP-DDPAALSLLGEAYLALGDFEKAAEYLAKATELD-PENAAARTQLGISKLSQGDPSEAI 417 (899)
T ss_pred HHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhCCChHHHH
Confidence 345555555555555554422 244455555555666666666666666555432 223344455555555556666665
Q ss_pred HHHHHHHHHhhhcCCCCcchHhHHHHHHHHHccCChhHHHHHHHhcCCCCCCCcchhHHHHHHHHHhcCChhhHHHHHHH
Q 010342 85 VLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYV 164 (512)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 164 (512)
..+.++.+..+. .......++..+.+.|++++|.++++.+....+ ++..++..+...+...|++++|.+.|++
T Consensus 418 ~~~~~a~~~~~~------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 490 (899)
T TIGR02917 418 ADLETAAQLDPE------LGRADLLLILSYLRSGQFDKALAAAKKLEKKQP-DNASLHNLLGAIYLGKGDLAKAREAFEK 490 (899)
T ss_pred HHHHHHHhhCCc------chhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCC-CCcHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 555554432211 112333455666667777777777766655433 4555677777777777777777777777
Q ss_pred HHHcCCCCCcchHHHHHHHHhccCchhHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCc
Q 010342 165 MRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRT 244 (512)
Q Consensus 165 ~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 244 (512)
+.+.... +...+..+...+...|++++|.+.++++.+.. +.+..++..+...+...|+.++|..+++++... .+.+.
T Consensus 491 a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~ 567 (899)
T TIGR02917 491 ALSIEPD-FFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAEL-NPQEI 567 (899)
T ss_pred HHhhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-Cccch
Confidence 7665322 44566667777777777777777777776654 445667777777777777777777777777643 33445
Q ss_pred ccHHHHHHHHHccCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHH
Q 010342 245 RICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFG 324 (512)
Q Consensus 245 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 324 (512)
..+..++..+...|++++|..+++.+.+.. +.+...|..+..++...|++++|...|+.+.+.. +.+...+..+...
T Consensus 568 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~ 644 (899)
T TIGR02917 568 EPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ--PDSALALLLLADA 644 (899)
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHH
Confidence 566667777777888888888887777654 3356677777888888888888888888777654 4566677777777
Q ss_pred HhhcCCHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHH
Q 010342 325 LLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDE 404 (512)
Q Consensus 325 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 404 (512)
+...|++++|...+.+.+... +.+..++..+...+...|++++|..+++.+.+.+ +.+...+..+...+...|++++
T Consensus 645 ~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~ 721 (899)
T TIGR02917 645 YAVMKNYAKAITSLKRALELK--PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPA 721 (899)
T ss_pred HHHcCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHH
Confidence 888888888888887765432 4456677777777777888888888888777764 5566677777777888888888
Q ss_pred HHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 010342 405 AKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRK 484 (512)
Q Consensus 405 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 484 (512)
|...++.+...+ |+..++..++.++.+.|++++|.+.++++.+.. +.+...+..+...|...|++++|.++++++.+
T Consensus 722 A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 798 (899)
T TIGR02917 722 AIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVK 798 (899)
T ss_pred HHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 888888877653 444566677777888888888888888777764 34667777777788888888888888888876
Q ss_pred CCCCCChHHHHHHHHhhccCCC
Q 010342 485 NGLNPDAVTWRILDKLHGNRGN 506 (512)
Q Consensus 485 ~~~~p~~~~~~~l~~~~~~~g~ 506 (512)
.. +++...+..+..++...|+
T Consensus 799 ~~-p~~~~~~~~l~~~~~~~~~ 819 (899)
T TIGR02917 799 KA-PDNAVVLNNLAWLYLELKD 819 (899)
T ss_pred hC-CCCHHHHHHHHHHHHhcCc
Confidence 53 4556677777777776665
No 9
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.96 E-value=1.1e-23 Score=216.75 Aligned_cols=488 Identities=11% Similarity=0.009 Sum_probs=326.5
Q ss_pred cccccCcHHHHHHHHHHHHhCCCCCChH-hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChh
Q 010342 3 QLCGLSRVGEAHKLFFDMKSRGHVPNVV-SYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVE 81 (512)
Q Consensus 3 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~ 81 (512)
.+.+.|++++|++.|+.+.+.+++ +.. ............|+.++|++.|+++.+.. +-+...+..+...+...|+.+
T Consensus 121 ll~~~g~~~eA~~~~~~~l~~~p~-~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~LA~ll~~~g~~~ 198 (1157)
T PRK11447 121 LLATTGRTEEALASYDKLFNGAPP-ELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTLALLLFSSGRRD 198 (1157)
T ss_pred HHHhCCCHHHHHHHHHHHccCCCC-ChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHccCCHH
Confidence 356789999999999999876433 322 12122222334689999999999998864 335667778888888899999
Q ss_pred hHHHHHHHHHHHhhh-------------cCCC--------------CcchH---------------------hHHHHHHH
Q 010342 82 RANVLMFKLWERMKE-------------EEDL--------------SVNNA---------------------AFANLVDS 113 (512)
Q Consensus 82 ~a~~~~~~~~~~~~~-------------~~~~--------------~~~~~---------------------~~~~l~~~ 113 (512)
+|...+.++...-+. .... .|+.. ........
T Consensus 199 eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~ 278 (1157)
T PRK11447 199 EGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLA 278 (1157)
T ss_pred HHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHH
Confidence 999888776432100 0000 01100 00122455
Q ss_pred HHccCChhHHHHHHHhcCCCCCCCcchhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCC-cchHH------------HH
Q 010342 114 LCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPS-LVSYN------------SI 180 (512)
Q Consensus 114 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~-~~~~~------------~l 180 (512)
+...|++++|+..|++.....+ .+..++..+..++.+.|++++|...|++..+...... ...|. ..
T Consensus 279 ~~~~g~~~~A~~~l~~aL~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~ 357 (1157)
T PRK11447 279 AVDSGQGGKAIPELQQAVRANP-KDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQ 357 (1157)
T ss_pred HHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHH
Confidence 6778999999999999887654 4567888899999999999999999999887643221 11121 22
Q ss_pred HHHHhccCchhHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHH-------
Q 010342 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRA------- 253 (512)
Q Consensus 181 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~------- 253 (512)
...+.+.|++++|...|+++++.. +.+...+..+...+...|++++|.+.|+++.... +.+...+..+...
T Consensus 358 g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~~~~~~ 435 (1157)
T PRK11447 358 GDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYRQQSPE 435 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCHH
Confidence 445678999999999999998864 4566778888999999999999999999988643 2233333333322
Q ss_pred -----------------------------------HHccCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHH
Q 010342 254 -----------------------------------LCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEA 298 (512)
Q Consensus 254 -----------------------------------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 298 (512)
+...|++++|...+++.++..+. +...+..+...|.+.|++++|
T Consensus 436 ~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~~LA~~~~~~G~~~~A 514 (1157)
T PRK11447 436 KALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPG-SVWLTYRLAQDLRQAGQRSQA 514 (1157)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHH
Confidence 33456666666666666655432 444555666666666666666
Q ss_pred HHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhhcccCCCCCCh---------hhHHHHHHHHHccCCHHH
Q 010342 299 LKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGI---------VTYNAVLRGLFRLRRVEE 369 (512)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---------~~~~~l~~~~~~~~~~~~ 369 (512)
...++++.+.. +.+...+..+...+...++.++|+..+.++. .....++. ..+..+...+...|+.++
T Consensus 515 ~~~l~~al~~~--P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~-~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~e 591 (1157)
T PRK11447 515 DALMRRLAQQK--PNDPEQVYAYGLYLSGSDRDRAALAHLNTLP-RAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAE 591 (1157)
T ss_pred HHHHHHHHHcC--CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCC-chhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHH
Confidence 66666665543 3344444444444555666666666665522 11111111 112234455667788888
Q ss_pred HHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 010342 370 AKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVD 449 (512)
Q Consensus 370 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 449 (512)
|..+++. .+.+...+..+...+.+.|++++|...++++++.. +.+...+..++..+...|++++|.+.++.+.+
T Consensus 592 A~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~ 665 (1157)
T PRK11447 592 AEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPA 665 (1157)
T ss_pred HHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 8877761 35566677888899999999999999999998765 56778889999999999999999999998876
Q ss_pred CCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CC---ChHHHHHHHHhhccCCC
Q 010342 450 SGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGL--NP---DAVTWRILDKLHGNRGN 506 (512)
Q Consensus 450 ~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~--~p---~~~~~~~l~~~~~~~g~ 506 (512)
.. +.+...+..+..++...|++++|.++++++....- +| +...+..+.+++...|+
T Consensus 666 ~~-p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~ 726 (1157)
T PRK11447 666 TA-NDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQ 726 (1157)
T ss_pred cC-CCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCC
Confidence 53 22456677788888899999999999999876421 11 12345445555555443
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.95 E-value=8e-23 Score=210.44 Aligned_cols=481 Identities=12% Similarity=0.028 Sum_probs=299.4
Q ss_pred cccccCcHHHHHHHHHHHHhCCCCCChHhH----------------HHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhh
Q 010342 3 QLCGLSRVGEAHKLFFDMKSRGHVPNVVSY----------------TTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLT 66 (512)
Q Consensus 3 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~----------------~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~ 66 (512)
.+.+.|+.++|.+.++++.+..+. +.... ..+...+.+.|++++|+..|+++.+.+ +|+...
T Consensus 71 ~~l~~g~~~~A~~~l~~l~~~~P~-~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~-p~~~~l 148 (1157)
T PRK11447 71 LLLRQGDSDGAQKLLDRLSQLAPD-SNAYRSSRTTMLLSTPEGRQALQQARLLATTGRTEEALASYDKLFNGA-PPELDL 148 (1157)
T ss_pred HHHhCCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHhcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCC-CCChHH
Confidence 456899999999999999998433 33322 333456889999999999999998753 344321
Q ss_pred -HHHHHHHHHhcCChhhHHHHHHHHHHHhhhcCCCCcchHhHHHHHHHHHccCChhHHHHHHHhcCCCCCC---------
Q 010342 67 -YSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSV--------- 136 (512)
Q Consensus 67 -~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--------- 136 (512)
...........++.++|...++++.+..|.. ...+..+...+...|+.++|++.++++......
T Consensus 149 a~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~------~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~ 222 (1157)
T PRK11447 149 AVEYWRLVAKLPAQRPEAINQLQRLNADYPGN------TGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWY 222 (1157)
T ss_pred HHHHHHHHhhCCccHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHH
Confidence 1112222234689999999999888764432 456677889999999999999999987543210
Q ss_pred -----------------------CcchhH---------------------HHHHHHHHhcCChhhHHHHHHHHHHcCCCC
Q 010342 137 -----------------------NEEFAC---------------------GHMIDSLCRSGRNHGASRVVYVMRKRGLTP 172 (512)
Q Consensus 137 -----------------------~~~~~~---------------------~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p 172 (512)
|+.... ......+...|++++|...|++..+....
T Consensus 223 ~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~P~- 301 (1157)
T PRK11447 223 GQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQAVRANPK- 301 (1157)
T ss_pred HHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-
Confidence 000000 01123345567777777777777665322
Q ss_pred CcchHHHHHHHHhccCchhHHHHHHHHHHhCCCCC-chhhH------------HHHHHHHhccCCHHHHHHHHHHHHhCC
Q 010342 173 SLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLP-SEHTY------------KVLVEGLCGESDLEKARKVLQFMLSKK 239 (512)
Q Consensus 173 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~------------~~l~~~~~~~g~~~~a~~~~~~~~~~~ 239 (512)
+...+..+..++.+.|++++|+..|++..+..... +...+ ......+.+.|++++|...|+++...
T Consensus 302 ~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~- 380 (1157)
T PRK11447 302 DSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQV- 380 (1157)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-
Confidence 55666777777777777777777777766543211 11111 11233456677777777777777654
Q ss_pred CCCCcccHHHHHHHHHccCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC-------C
Q 010342 240 DVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFC-------A 312 (512)
Q Consensus 240 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-------~ 312 (512)
.+.+...+..+...+...|++++|++.|+...+..+. +...+..+...+. .++.++|..+++.+...... .
T Consensus 381 ~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~-~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~ 458 (1157)
T PRK11447 381 DNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG-NTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERS 458 (1157)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 2334445556667777777777777777777765432 3444445555443 23455555555443221100 0
Q ss_pred CcHHHHHHHHHHHhhcCCHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHH
Q 010342 313 PDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIV 392 (512)
Q Consensus 313 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 392 (512)
.....+..+...+...|++++|+..|++.+... +.++..+..+...|.+.|++++|...++++.+.. +.+...+..+
T Consensus 459 l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~--P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~-P~~~~~~~a~ 535 (1157)
T PRK11447 459 LQNDRLAQQAEALENQGKWAQAAELQRQRLALD--PGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQK-PNDPEQVYAY 535 (1157)
T ss_pred hhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHH
Confidence 001122334455566777777777777765433 2344555666667777777777777777776532 2233322222
Q ss_pred --------------------------------------------HHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHH
Q 010342 393 --------------------------------------------IDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMI 428 (512)
Q Consensus 393 --------------------------------------------~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 428 (512)
...+...|+.++|..+++. .+.+...+..+.
T Consensus 536 al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La 610 (1157)
T PRK11447 536 GLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLA 610 (1157)
T ss_pred HHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHH
Confidence 2334445555555555541 244555677788
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-hHHHHHHHHhhccCCC
Q 010342 429 KGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPD-AVTWRILDKLHGNRGN 506 (512)
Q Consensus 429 ~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~ 506 (512)
..+.+.|++++|++.|++.++.. +.+...+..++..+...|++++|.+.++...+ ..|+ ..++..+..++...|+
T Consensus 611 ~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~--~~p~~~~~~~~la~~~~~~g~ 686 (1157)
T PRK11447 611 DWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPA--TANDSLNTQRRVALAWAALGD 686 (1157)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhc--cCCCChHHHHHHHHHHHhCCC
Confidence 88999999999999999998875 33677888999999999999999999998876 3454 3455556666665554
No 11
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.93 E-value=3.3e-20 Score=182.71 Aligned_cols=476 Identities=12% Similarity=0.015 Sum_probs=243.5
Q ss_pred ccCcHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhhHHH
Q 010342 6 GLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANV 85 (512)
Q Consensus 6 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 85 (512)
..|++++|+..|+...+..+. +..++..|...|.+.|++++|+..+++..+. .|+...|..++..+ +++++|..
T Consensus 56 ~~Gd~~~A~~~l~~Al~~dP~-n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~l--dP~n~~~~~~La~i---~~~~kA~~ 129 (987)
T PRK09782 56 KNNDEATAIREFEYIHQQVPD-NIPLTLYLAEAYRHFGHDDRARLLLEDQLKR--HPGDARLERSLAAI---PVEVKSVT 129 (987)
T ss_pred hCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHHHHHHh---ccChhHHH
Confidence 459999999999999998555 5788999999999999999999999999986 35554444444333 88888888
Q ss_pred HHHHHHHHhhhcCCCC-------------------------------c--chHhHHHH-HHHHHccCChhHHHHHHHhcC
Q 010342 86 LMFKLWERMKEEEDLS-------------------------------V--NNAAFANL-VDSLCREGYVNEVFRIAEDMP 131 (512)
Q Consensus 86 ~~~~~~~~~~~~~~~~-------------------------------~--~~~~~~~l-~~~~~~~g~~~~a~~~~~~~~ 131 (512)
++++++...|...... | ...+.... .+.|...|++++|++++.++.
T Consensus 130 ~ye~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~ 209 (987)
T PRK09782 130 TVEELLAQQKACDAVPTLRCRSEVGQNALRLAQLPVARAQLNDATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEAR 209 (987)
T ss_pred HHHHHHHhCCCChhHHHHHHHHhhccchhhhhhHHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHH
Confidence 8888877655432211 1 12222222 445555555555555555555
Q ss_pred CCCCCCcchhHHHHHHHHHh-cCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHhccCchhHHHHHHHHHHhCCCC-Cch
Q 010342 132 QGKSVNEEFACGHMIDSLCR-SGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYL-PSE 209 (512)
Q Consensus 132 ~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~ 209 (512)
+.++ .+......+..+|.. .++ +.+..+++. .++-++..+..+...+.+.|+.++|.+.++++...-.. |..
T Consensus 210 k~~p-l~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~ 283 (987)
T PRK09782 210 QQNT-LSAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQE 283 (987)
T ss_pred hcCC-CCHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCcc
Confidence 5543 222233334444444 244 444444332 12235566667777777888888888877775432100 111
Q ss_pred hhH------------------------------HHHHHHHhcc-------------------------------------
Q 010342 210 HTY------------------------------KVLVEGLCGE------------------------------------- 222 (512)
Q Consensus 210 ~~~------------------------------~~l~~~~~~~------------------------------------- 222 (512)
.++ ..++..+.+.
T Consensus 284 ~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ 363 (987)
T PRK09782 284 KSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALR 363 (987)
T ss_pred HHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHH
Confidence 111 0011222222
Q ss_pred --------------------------CCHHHHHHHHHHHHhC-C-CCCCcccHHHHHHHHHccCC---hhhHHHH-----
Q 010342 223 --------------------------SDLEKARKVLQFMLSK-K-DVDRTRICNIYLRALCLIKN---PTELLNV----- 266 (512)
Q Consensus 223 --------------------------g~~~~a~~~~~~~~~~-~-~~~~~~~~~~l~~~~~~~~~---~~~a~~~----- 266 (512)
|+.++|.++++..... + ...+......++..|.+.+. ..++..+
T Consensus 364 ~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~ 443 (987)
T PRK09782 364 LARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLP 443 (987)
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccc
Confidence 3333333333333221 0 00111123344445544433 2222111
Q ss_pred -----------------HHHHHhc-CC-CC--ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHH
Q 010342 267 -----------------LVFMLQT-QC-QP--DVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGL 325 (512)
Q Consensus 267 -----------------~~~~~~~-~~-~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 325 (512)
+...... +. ++ +...|..+..++.. ++.++|...+.+..... |+......+...+
T Consensus 444 ~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~---Pd~~~~L~lA~al 519 (987)
T PRK09782 444 LAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ---PDAWQHRAVAYQA 519 (987)
T ss_pred cchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC---CchHHHHHHHHHH
Confidence 1111111 11 22 34455555555554 56666666555555432 3333333333344
Q ss_pred hhcCCHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHH
Q 010342 326 LNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEA 405 (512)
Q Consensus 326 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 405 (512)
...|++++|...+++++.. +|+...+..+...+.+.|++++|...+++..+.. +.+...+..+.......|++++|
T Consensus 520 ~~~Gr~eeAi~~~rka~~~---~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eA 595 (987)
T PRK09782 520 YQVEDYATALAAWQKISLH---DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELA 595 (987)
T ss_pred HHCCCHHHHHHHHHHHhcc---CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHH
Confidence 4566666666666553321 2333334444455555666666666666555542 22222222222333334566666
Q ss_pred HHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 010342 406 KRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKN 485 (512)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 485 (512)
...+++.++.. |+...+..+..++.+.|++++|...+++..+.. +.+...++.+..++...|++++|++.+++..+
T Consensus 596 l~~~~~AL~l~--P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~- 671 (987)
T PRK09782 596 LNDLTRSLNIA--PSANAYVARATIYRQRHNVPAAVSDLRAALELE-PNNSNYQAALGYALWDSGDIAQSREMLERAHK- 671 (987)
T ss_pred HHHHHHHHHhC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-
Confidence 66666555432 344555555555556666666666665555543 22344555555555555666666665555554
Q ss_pred CCCC-ChHHHHHHHHhhccCCC
Q 010342 486 GLNP-DAVTWRILDKLHGNRGN 506 (512)
Q Consensus 486 ~~~p-~~~~~~~l~~~~~~~g~ 506 (512)
..| +...+..+..++...|+
T Consensus 672 -l~P~~~~a~~nLA~al~~lGd 692 (987)
T PRK09782 672 -GLPDDPALIRQLAYVNQRLDD 692 (987)
T ss_pred -hCCCCHHHHHHHHHHHHHCCC
Confidence 233 23344445455544443
No 12
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.93 E-value=4.8e-22 Score=174.61 Aligned_cols=436 Identities=12% Similarity=0.054 Sum_probs=344.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHHHhhhcCCCCcchHhHHHHH
Q 010342 32 YTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLV 111 (512)
Q Consensus 32 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 111 (512)
...|.+-..+.|++.+|++--.-.-..+ +.+....-.+-..+.+..+++...+.-....+ ....-..+|+.+.
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r------~~~q~ae~ysn~a 123 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIR------KNPQGAEAYSNLA 123 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhh------ccchHHHHHHHHH
Confidence 3455566667888888888766554432 22333333344555566666655433222222 2333467899999
Q ss_pred HHHHccCChhHHHHHHHhcCCCCCCCcchhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCcchH-HHHHHHHhccCch
Q 010342 112 DSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSY-NSIVHGLCKHGGC 190 (512)
Q Consensus 112 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~-~~l~~~~~~~~~~ 190 (512)
..+-..|++++|+.+++.+.+..+ .....|..+..++...|+.+.|.+.|....+. .|+.... ..+.......|+.
T Consensus 124 N~~kerg~~~~al~~y~~aiel~p-~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl 200 (966)
T KOG4626|consen 124 NILKERGQLQDALALYRAAIELKP-KFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRL 200 (966)
T ss_pred HHHHHhchHHHHHHHHHHHHhcCc-hhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhccc
Confidence 999999999999999999888764 45678999999999999999999999998876 4444433 3344455568999
Q ss_pred hHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChhhHHHHHHHH
Q 010342 191 MRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFM 270 (512)
Q Consensus 191 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 270 (512)
++|...|.++++.. +--...|+.|...+-..|+...|...|++.... .+.-...|..+...|...+.++.|...+...
T Consensus 201 ~ea~~cYlkAi~~q-p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl-dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rA 278 (966)
T KOG4626|consen 201 EEAKACYLKAIETQ-PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL-DPNFLDAYINLGNVYKEARIFDRAVSCYLRA 278 (966)
T ss_pred chhHHHHHHHHhhC-CceeeeehhcchHHhhcchHHHHHHHHHHhhcC-CCcchHHHhhHHHHHHHHhcchHHHHHHHHH
Confidence 99999999988753 223567889999999999999999999998743 3344678889999999999999999999888
Q ss_pred HhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhhcccCCCCCC
Q 010342 271 LQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPG 350 (512)
Q Consensus 271 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 350 (512)
....+. ....+..+...|...|.++.|+..+++..+.. +.-...|+.+..++-..|+..+|.+.+.+.+.-. +..
T Consensus 279 l~lrpn-~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~--P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~--p~h 353 (966)
T KOG4626|consen 279 LNLRPN-HAVAHGNLACIYYEQGLLDLAIDTYKRALELQ--PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLC--PNH 353 (966)
T ss_pred HhcCCc-chhhccceEEEEeccccHHHHHHHHHHHHhcC--CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhC--Ccc
Confidence 776433 45667777778899999999999999999876 5667889999999999999999999999977554 333
Q ss_pred hhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCC-HHhHHHHHH
Q 010342 351 IVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD-NYVYAAMIK 429 (512)
Q Consensus 351 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~ 429 (512)
....+.|...+...|.++.|..+|....+-. +--...++.|...|-..|++++|...+++.++. .|+ ...++.+..
T Consensus 354 adam~NLgni~~E~~~~e~A~~ly~~al~v~-p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI--~P~fAda~~NmGn 430 (966)
T KOG4626|consen 354 ADAMNNLGNIYREQGKIEEATRLYLKALEVF-PEFAAAHNNLASIYKQQGNLDDAIMCYKEALRI--KPTFADALSNMGN 430 (966)
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHhhC-hhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhc--CchHHHHHHhcch
Confidence 5578899999999999999999999988742 333457899999999999999999999999874 454 458899999
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh
Q 010342 430 GLCRSGKIHEAVHFLYELVDSGVTPN-IVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDA 491 (512)
Q Consensus 430 ~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~ 491 (512)
.|-..|+.+.|.+.+.+.+.. .|. ....+.|...|-.+|+..+|++-++..++ ++||.
T Consensus 431 t~ke~g~v~~A~q~y~rAI~~--nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLk--lkPDf 489 (966)
T KOG4626|consen 431 TYKEMGDVSAAIQCYTRAIQI--NPTFAEAHSNLASIYKDSGNIPEAIQSYRTALK--LKPDF 489 (966)
T ss_pred HHHHhhhHHHHHHHHHHHHhc--CcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHc--cCCCC
Confidence 999999999999999998875 443 56788999999999999999999999987 67774
No 13
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.92 E-value=6e-22 Score=182.47 Aligned_cols=301 Identities=12% Similarity=0.043 Sum_probs=191.8
Q ss_pred HHhcCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHhccCchhHHHHHHHHHHhCCCCCc---hhhHHHHHHHHhccCCH
Q 010342 149 LCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPS---EHTYKVLVEGLCGESDL 225 (512)
Q Consensus 149 ~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~ 225 (512)
+...|++++|...|+++.+.+. .+..++..+...+...|++++|..+++.+...+..++ ...+..+...+...|++
T Consensus 45 ~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~ 123 (389)
T PRK11788 45 FLLNEQPDKAIDLFIEMLKVDP-ETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLL 123 (389)
T ss_pred HHhcCChHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCH
Confidence 3444555555555555555421 1333455555555555555555555555544321111 12334444444445555
Q ss_pred HHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 010342 226 EKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDM 305 (512)
Q Consensus 226 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 305 (512)
+.|..+|+.+ .+.. +++..++..++..+.+.|++++|.+.++.+
T Consensus 124 ~~A~~~~~~~-----------------------------------l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 167 (389)
T PRK11788 124 DRAEELFLQL-----------------------------------VDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERL 167 (389)
T ss_pred HHHHHHHHHH-----------------------------------HcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHH
Confidence 5555555444 4332 235566777777788888888888888877
Q ss_pred hhCCCCCCc---HHHHHHHHHHHhhcCCHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCC
Q 010342 306 VAGKFCAPD---AVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGV 382 (512)
Q Consensus 306 ~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 382 (512)
.+.....+. ...+..+...+.+.|++++|...+.++++.. +.+...+..+...+.+.|++++|..+++++.+.+.
T Consensus 168 ~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p 245 (389)
T PRK11788 168 EKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAAD--PQCVRASILLGDLALAQGDYAAAIEALERVEEQDP 245 (389)
T ss_pred HHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC--cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCh
Confidence 765421111 1234556667777888888888887765432 33445666777788888888888888888876532
Q ss_pred CCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHH
Q 010342 383 VADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVV 462 (512)
Q Consensus 383 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l 462 (512)
.....++..++.+|...|++++|...++++.+. .|+...+..++..+.+.|++++|..+++++.+. .|+...+..+
T Consensus 246 ~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l 321 (389)
T PRK11788 246 EYLSEVLPKLMECYQALGDEAEGLEFLRRALEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRL 321 (389)
T ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHH
Confidence 222456777888888888888888888888765 355556677888888888888888888888775 5777777777
Q ss_pred HHHHHh---cCCHHHHHHHHHHHHHCCCCCChH
Q 010342 463 IDGACK---LSMKREAYQILREMRKNGLNPDAV 492 (512)
Q Consensus 463 ~~~~~~---~g~~~~a~~~~~~m~~~~~~p~~~ 492 (512)
+..+.. .|+.+++..++++|.+.++.|++.
T Consensus 322 ~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 322 LDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred HHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 776664 457888888888888777777665
No 14
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.92 E-value=5.1e-20 Score=178.29 Aligned_cols=255 Identities=12% Similarity=0.044 Sum_probs=125.3
Q ss_pred CchhHHHHHHHHHHhCC-CCC-chhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChhhHHH
Q 010342 188 GGCMRAYQLLEEGIQFG-YLP-SEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLN 265 (512)
Q Consensus 188 ~~~~~a~~~~~~~~~~~-~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 265 (512)
+++++|.+.|+.+.+.+ ..| ....+..+...+...|++++|...+++..+. .+.....+..+...+...|++++|..
T Consensus 308 ~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l-~P~~~~~~~~la~~~~~~g~~~eA~~ 386 (615)
T TIGR00990 308 ESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL-DPRVTQSYIKRASMNLELGDPDKAEE 386 (615)
T ss_pred hhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCcHHHHHHHHHHHHHCCCHHHHHH
Confidence 45566666666665543 112 3344555555555666666666666665542 22223344445555555555555555
Q ss_pred HHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhhcccC
Q 010342 266 VLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQR 345 (512)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 345 (512)
.++...+..+ .+...+..+...+...|++++|+..|++..... +.+...+..+...+.+.|++++|+..|.+.+...
T Consensus 387 ~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~--P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~ 463 (615)
T TIGR00990 387 DFDKALKLNS-EDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD--PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF 463 (615)
T ss_pred HHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 5555554432 234455555555555555555555555555443 3344445555555555555555555555544322
Q ss_pred CCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChH------hHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCC
Q 010342 346 GYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADST------TYAIVIDGLCESNQLDEAKRFWDDIVWPSNIH 419 (512)
Q Consensus 346 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 419 (512)
+.+...++.+...+...|++++|...|++..+.....+.. .++.....+...|++++|..++++....+ +.
T Consensus 464 --P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~-p~ 540 (615)
T TIGR00990 464 --PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIID-PE 540 (615)
T ss_pred --CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC-CC
Confidence 2234445555555555555555555555555432110000 01111112223455555555555554432 22
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 010342 420 DNYVYAAMIKGLCRSGKIHEAVHFLYELVD 449 (512)
Q Consensus 420 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 449 (512)
+...+..+...+...|++++|.+.|++..+
T Consensus 541 ~~~a~~~la~~~~~~g~~~eAi~~~e~A~~ 570 (615)
T TIGR00990 541 CDIAVATMAQLLLQQGDVDEALKLFERAAE 570 (615)
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 333455555555555555555555555544
No 15
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.92 E-value=3e-20 Score=171.70 Aligned_cols=489 Identities=11% Similarity=0.030 Sum_probs=306.5
Q ss_pred cccccCcHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcC---ChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCC
Q 010342 3 QLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTG---EMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRD 79 (512)
Q Consensus 3 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~ 79 (512)
+|.+.|+.+.|+..|++..+.++ .++.++-.|...-.... .+..++.++...-... +-|+...+.|-.-+...|+
T Consensus 208 Cf~kl~~~~~a~~a~~ralqLdp-~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~d 285 (1018)
T KOG2002|consen 208 CFWKLGMSEKALLAFERALQLDP-TCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKEN-NENPVALNHLANHFYFKKD 285 (1018)
T ss_pred HHHhccchhhHHHHHHHHHhcCh-hhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhc-CCCcHHHHHHHHHHhhccc
Confidence 56788888888888888888744 24444444443333333 3556777777766543 4588889999999999999
Q ss_pred hhhHHHHHHHHHHHhhhcCCCCcchHhHHHHHHHHHccCChhHHHHHHHhcCCCCCCCcchhHHHHHHHHHhcCChhhHH
Q 010342 80 VERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGAS 159 (512)
Q Consensus 80 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 159 (512)
++.++.+...++..+. .-..-...|-.+.++|-..|++++|...|.+..+.........+..+...+.+.|+.+.+.
T Consensus 286 y~~v~~la~~ai~~t~---~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~ 362 (1018)
T KOG2002|consen 286 YERVWHLAEHAIKNTE---NKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESK 362 (1018)
T ss_pred HHHHHHHHHHHHHhhh---hhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHH
Confidence 9999998887776542 2233445677799999999999999999999887664333455666889999999999999
Q ss_pred HHHHHHHHcCCCCCcchHHHHHHHHhccC----chhHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHH
Q 010342 160 RVVYVMRKRGLTPSLVSYNSIVHGLCKHG----GCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFM 235 (512)
Q Consensus 160 ~~~~~~~~~g~~p~~~~~~~l~~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 235 (512)
..|+.+.... +-+..+.-.|...|+..+ ..+.|..++.+..+.- +.|...|..+...+.. ++...++.+|..+
T Consensus 363 ~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~-~d~~~sL~~~~~A 439 (1018)
T KOG2002|consen 363 FCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQ-TDPWASLDAYGNA 439 (1018)
T ss_pred HHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHh-cChHHHHHHHHHH
Confidence 9999998863 225667777877777765 4566777777766543 4567777777766654 4444446666544
Q ss_pred ----HhCCCCCCcccHHHHHHHHHccCChhhHHHHHHHHHhc---CCCCCh------hhHHHHHHHHHhcCCHHHHHHHH
Q 010342 236 ----LSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQT---QCQPDV------ITLNTVINGFCKMGRIEEALKVL 302 (512)
Q Consensus 236 ----~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~------~~~~~l~~~~~~~~~~~~a~~~~ 302 (512)
...+..+++...+.+...+...|++++|...|...... ...++. .+--.+..++...++.+.|.+.|
T Consensus 440 ~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Y 519 (1018)
T KOG2002|consen 440 LDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMY 519 (1018)
T ss_pred HHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHH
Confidence 34566677888999999999999999999888877655 122232 12233455566667788888888
Q ss_pred HHHhhCCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhC-C
Q 010342 303 NDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGI-G 381 (512)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~ 381 (512)
..+.+.. +.-+..|..++...-..+...+|..++.+.+......|+ .+..+...+.....+..|..-|....+. .
T Consensus 520 k~Ilkeh--p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~--arsl~G~~~l~k~~~~~a~k~f~~i~~~~~ 595 (1018)
T KOG2002|consen 520 KSILKEH--PGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPN--ARSLLGNLHLKKSEWKPAKKKFETILKKTS 595 (1018)
T ss_pred HHHHHHC--chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcH--HHHHHHHHHHhhhhhcccccHHHHHHhhhc
Confidence 8887664 334444555544444456667777777776655544444 3333444455555555555544444331 1
Q ss_pred CCCChHhHHHHHHHHHh------------cCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 010342 382 VVADSTTYAIVIDGLCE------------SNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVD 449 (512)
Q Consensus 382 ~~~~~~~~~~l~~~~~~------------~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 449 (512)
..+|..+.-.|.+.|.. .+..++|+++|.++++.+ +.|...-|.+.-.++..|++.+|..+|.+.++
T Consensus 596 ~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrE 674 (1018)
T KOG2002|consen 596 TKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVRE 674 (1018)
T ss_pred cCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHH
Confidence 12344444444443321 123455555555555443 44555555555555555666666666655555
Q ss_pred CCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCChHHHHHHHHhhccCC
Q 010342 450 SGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKN-GLNPDAVTWRILDKLHGNRG 505 (512)
Q Consensus 450 ~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~-~~~p~~~~~~~l~~~~~~~g 505 (512)
... -...+|..+..+|..+|+|..|+++|+...+. .-.-+......|.+++-..|
T Consensus 675 a~~-~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~ 730 (1018)
T KOG2002|consen 675 ATS-DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAG 730 (1018)
T ss_pred HHh-hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhh
Confidence 432 13345555555666666666666665554432 22223444555555554443
No 16
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.92 E-value=2.8e-21 Score=169.84 Aligned_cols=367 Identities=14% Similarity=0.045 Sum_probs=202.0
Q ss_pred hHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHHHhhhcCCCCcchHhHH
Q 010342 29 VVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFA 108 (512)
Q Consensus 29 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (512)
..+|..+...+-..|+++.|+.+++.+.+.. +.....|..+..++...|+.+.|.+.+.+.++..|.... ..+
T Consensus 116 ae~ysn~aN~~kerg~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~c------a~s 188 (966)
T KOG4626|consen 116 AEAYSNLANILKERGQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYC------ARS 188 (966)
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhh------hhc
Confidence 3455566666666666666666666666542 123455666666666666666666665555443222111 111
Q ss_pred HHHHHHHccCChhHHHHHHHhcCCCCCCCcchhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCC-cchHHHHHHHHhcc
Q 010342 109 NLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPS-LVSYNSIVHGLCKH 187 (512)
Q Consensus 109 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~ 187 (512)
.+...+-..|++++|...+.+.....+ --..+|+.|...+-.+|+...|++.|++.... .|+ ...|..|...|...
T Consensus 189 ~lgnLlka~Grl~ea~~cYlkAi~~qp-~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~ 265 (966)
T KOG4626|consen 189 DLGNLLKAEGRLEEAKACYLKAIETQP-CFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEA 265 (966)
T ss_pred chhHHHHhhcccchhHHHHHHHHhhCC-ceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHH
Confidence 234444455666666665555443322 22345556666666666666666666666554 232 34566666666666
Q ss_pred CchhHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChhhHHHHH
Q 010342 188 GGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVL 267 (512)
Q Consensus 188 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 267 (512)
+.+++|...|.++.... +.....+..+...|...|+++.|...|++..+. .+.-+..|+.+..++-..|+..+|.+.+
T Consensus 266 ~~~d~Avs~Y~rAl~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~-~P~F~~Ay~NlanALkd~G~V~ea~~cY 343 (966)
T KOG4626|consen 266 RIFDRAVSCYLRALNLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL-QPNFPDAYNNLANALKDKGSVTEAVDCY 343 (966)
T ss_pred hcchHHHHHHHHHHhcC-CcchhhccceEEEEeccccHHHHHHHHHHHHhc-CCCchHHHhHHHHHHHhccchHHHHHHH
Confidence 66666666666655432 223445555666666666666666666666532 2333445666666666666666666666
Q ss_pred HHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhhcccCCC
Q 010342 268 VFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGY 347 (512)
Q Consensus 268 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 347 (512)
...+...+. .....+.|...+...|.++.|..+|....+.. +.-....+.|...|-+.|+.++|+..+.+.++ +
T Consensus 344 nkaL~l~p~-hadam~NLgni~~E~~~~e~A~~ly~~al~v~--p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr---I 417 (966)
T KOG4626|consen 344 NKALRLCPN-HADAMNNLGNIYREQGKIEEATRLYLKALEVF--PEFAAAHNNLASIYKQQGNLDDAIMCYKEALR---I 417 (966)
T ss_pred HHHHHhCCc-cHHHHHHHHHHHHHhccchHHHHHHHHHHhhC--hhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh---c
Confidence 665554332 34455556666666666666666666555433 33344555566666666666666666655432 2
Q ss_pred CCC-hhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhc
Q 010342 348 SPG-IVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVW 414 (512)
Q Consensus 348 ~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 414 (512)
.|+ ...|+.+...|-..|+.+.|.+.+.+....+ +.-...++.|...|-..|++.+|+.-+++.++
T Consensus 418 ~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~n-Pt~AeAhsNLasi~kDsGni~~AI~sY~~aLk 484 (966)
T KOG4626|consen 418 KPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQIN-PTFAEAHSNLASIYKDSGNIPEAIQSYRTALK 484 (966)
T ss_pred CchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcC-cHHHHHHhhHHHHhhccCCcHHHHHHHHHHHc
Confidence 333 3445555556666666666666666555432 22233555566666666666666666666554
No 17
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.91 E-value=5.6e-20 Score=177.20 Aligned_cols=330 Identities=12% Similarity=0.036 Sum_probs=188.5
Q ss_pred HHHHHHccCChhHHHHHHHhcCCCCCCCcchhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHhccCc
Q 010342 110 LVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGG 189 (512)
Q Consensus 110 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~ 189 (512)
++..+.+.|++++|..+++......+.+. ..+..++.+....|+++.|.+.++.+....+. +...+..+...+...|+
T Consensus 48 ~~~~~~~~g~~~~A~~l~~~~l~~~p~~~-~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~-~~~a~~~la~~l~~~g~ 125 (656)
T PRK15174 48 FAIACLRKDETDVGLTLLSDRVLTAKNGR-DLLRRWVISPLASSQPDAVLQVVNKLLAVNVC-QPEDVLLVASVLLKSKQ 125 (656)
T ss_pred HHHHHHhcCCcchhHHHhHHHHHhCCCch-hHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCC
Confidence 44555566666666666666555544332 23333445555566666666666666655322 34455666666666666
Q ss_pred hhHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChhhHHHHHHH
Q 010342 190 CMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVF 269 (512)
Q Consensus 190 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 269 (512)
+++|...++++.+.. +.+...+..+...+...|++++|...++.+..... .+...+..+ ..+...|++++|...++.
T Consensus 126 ~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P-~~~~a~~~~-~~l~~~g~~~eA~~~~~~ 202 (656)
T PRK15174 126 YATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVP-PRGDMIATC-LSFLNKSRLPEDHDLARA 202 (656)
T ss_pred HHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCC-CCHHHHHHH-HHHHHcCCHHHHHHHHHH
Confidence 666666666666542 33445556666666666666666666665543321 222222222 235556666666666666
Q ss_pred HHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCCHHH----HHHHHHhhcccC
Q 010342 270 MLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQE----ALNLLYQVMPQR 345 (512)
Q Consensus 270 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----a~~~~~~~~~~~ 345 (512)
+.+....++......+..++...|++++|+..+++..... +.+...+..+...+...|++++ |...+++.+...
T Consensus 203 ~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~--p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~ 280 (656)
T PRK15174 203 LLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG--LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN 280 (656)
T ss_pred HHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC
Confidence 6555433333334444556666677777777776666554 4455566666666666666664 566666655332
Q ss_pred CCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHH
Q 010342 346 GYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYA 425 (512)
Q Consensus 346 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 425 (512)
+.+...+..+...+...|++++|...+++..+.. +.+...+..+..++...|++++|...++++...+ +.+...+.
T Consensus 281 --P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~-P~~~~~~~ 356 (656)
T PRK15174 281 --SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLAREK-GVTSKWNR 356 (656)
T ss_pred --CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-ccchHHHH
Confidence 3344556666666666777777777776666643 3344455566666666777777777776665542 22222333
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC
Q 010342 426 AMIKGLCRSGKIHEAVHFLYELVDS 450 (512)
Q Consensus 426 ~l~~~~~~~g~~~~a~~~~~~~~~~ 450 (512)
.+..++...|+.++|...|++..+.
T Consensus 357 ~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 357 YAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 3455566667777777777666654
No 18
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.90 E-value=1e-20 Score=174.36 Aligned_cols=307 Identities=14% Similarity=0.032 Sum_probs=239.6
Q ss_pred HHHHHccCChhHHHHHHHhcCCCCCCCcchhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCC---cchHHHHHHHHhcc
Q 010342 111 VDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPS---LVSYNSIVHGLCKH 187 (512)
Q Consensus 111 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~---~~~~~~l~~~~~~~ 187 (512)
...+...|++++|...|+++...++ .+..++..+...+...|++++|..+++.+...+..++ ..++..+...+...
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~ 120 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVDP-ETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKA 120 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHC
Confidence 4456788999999999999998764 4556788899999999999999999999987532221 24678889999999
Q ss_pred CchhHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChhhHHHHH
Q 010342 188 GGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVL 267 (512)
Q Consensus 188 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 267 (512)
|++++|..+|+++.+.. +++..++..++..+...|++++|.+.++.+...+..+...
T Consensus 121 g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---------------------- 177 (389)
T PRK11788 121 GLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRV---------------------- 177 (389)
T ss_pred CCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchH----------------------
Confidence 99999999999998753 4567889999999999999999999999987643211100
Q ss_pred HHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhhcccCCC
Q 010342 268 VFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGY 347 (512)
Q Consensus 268 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 347 (512)
.....+..+...+.+.|++++|...|+++.+.. +.+...+..+...+.+.|++++|.+.+.++.... .
T Consensus 178 ---------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p 245 (389)
T PRK11788 178 ---------EIAHFYCELAQQALARGDLDAARALLKKALAAD--PQCVRASILLGDLALAQGDYAAAIEALERVEEQD-P 245 (389)
T ss_pred ---------HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC--cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-h
Confidence 011234556667778888888888888887654 4456677778888888888888888888865332 1
Q ss_pred CCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHH
Q 010342 348 SPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAM 427 (512)
Q Consensus 348 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 427 (512)
.....++..++.+|...|++++|...++++.+. .|+...+..++..+.+.|++++|..+++++.+. .|+...++.+
T Consensus 246 ~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l 321 (389)
T PRK11788 246 EYLSEVLPKLMECYQALGDEAEGLEFLRRALEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRL 321 (389)
T ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHH
Confidence 112356778888899999999999999998875 456666788889999999999999999988765 5777788888
Q ss_pred HHHHHh---cCCHHHHHHHHHHHHHCCCCCChh
Q 010342 428 IKGLCR---SGKIHEAVHFLYELVDSGVTPNIV 457 (512)
Q Consensus 428 ~~~~~~---~g~~~~a~~~~~~~~~~~~~p~~~ 457 (512)
+..+.. .|+.+++..+++++.+.++.|++.
T Consensus 322 ~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 322 LDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred HHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 877664 458889999999999877777765
No 19
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.90 E-value=4.9e-19 Score=170.70 Aligned_cols=360 Identities=12% Similarity=0.040 Sum_probs=284.1
Q ss_pred HHccCChhHHHHHHHhcCCCCCC--CcchhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHhccCchh
Q 010342 114 LCREGYVNEVFRIAEDMPQGKSV--NEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCM 191 (512)
Q Consensus 114 ~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~ 191 (512)
+.+..+++...-.|....++... .+......++..+.+.|++++|..+++........ +...+..++.+....|+++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~-~~~~l~~l~~~~l~~g~~~ 93 (656)
T PRK15174 15 LLKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKN-GRDLLRRWVISPLASSQPD 93 (656)
T ss_pred hhhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCC-chhHHHHHhhhHhhcCCHH
Confidence 34556666666666555443211 12223344667788999999999999999987544 4456666677778899999
Q ss_pred HHHHHHHHHHhCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChhhHHHHHHHHH
Q 010342 192 RAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFML 271 (512)
Q Consensus 192 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 271 (512)
.|.+.++++.+.. +.+...+..+...+...|++++|...+++.... .+.+...+..+...+...|++++|...++.+.
T Consensus 94 ~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l-~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~ 171 (656)
T PRK15174 94 AVLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYATVADLAEQAWLA-FSGNSQIFALHLRTLVLMDKELQAISLARTQA 171 (656)
T ss_pred HHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHH
Confidence 9999999999864 556778888999999999999999999999864 45556788888999999999999999999887
Q ss_pred hcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhhcccCCCCCCh
Q 010342 272 QTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGI 351 (512)
Q Consensus 272 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 351 (512)
...+.+ ...+..+ ..+...|++++|...++.+..... .++......+...+...|++++|...+.+.+... +.+.
T Consensus 172 ~~~P~~-~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~-~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~--p~~~ 246 (656)
T PRK15174 172 QEVPPR-GDMIATC-LSFLNKSRLPEDHDLARALLPFFA-LERQESAGLAVDTLCAVGKYQEAIQTGESALARG--LDGA 246 (656)
T ss_pred HhCCCC-HHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCC-CcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCCH
Confidence 765443 3333333 347889999999999999877642 2344455566778899999999999999977543 4456
Q ss_pred hhHHHHHHHHHccCCHHH----HHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHH
Q 010342 352 VTYNAVLRGLFRLRRVEE----AKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAM 427 (512)
Q Consensus 352 ~~~~~l~~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 427 (512)
..+..+...+...|++++ |...|++..+.. +.+...+..+...+...|++++|...++++.... +.+...+..+
T Consensus 247 ~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~L 324 (656)
T PRK15174 247 ALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMY 324 (656)
T ss_pred HHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 778888999999999986 899999999864 5567789999999999999999999999998765 5566778889
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCh-hhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 010342 428 IKGLCRSGKIHEAVHFLYELVDSGVTPNI-VCYNVVIDGACKLSMKREAYQILREMRKN 485 (512)
Q Consensus 428 ~~~~~~~g~~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 485 (512)
..++...|++++|...++++.+.+ |+. ..+..+..++...|++++|...+++..+.
T Consensus 325 a~~l~~~G~~~eA~~~l~~al~~~--P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 325 ARALRQVGQYTAASDEFVQLAREK--GVTSKWNRYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC--ccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 999999999999999999998864 443 33444577889999999999999998763
No 20
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.89 E-value=5.4e-18 Score=167.30 Aligned_cols=403 Identities=12% Similarity=0.001 Sum_probs=279.3
Q ss_pred hhhHHHH-HHHHHhcCChhhHHHHHHHHHHHhhhcCCCCcchHhHHHHHHHHHc-cCChhHHHHHHHhcCCCCCCCcchh
Q 010342 64 SLTYSVL-VRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCR-EGYVNEVFRIAEDMPQGKSVNEEFA 141 (512)
Q Consensus 64 ~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~ 141 (512)
+.+.... ...|...+++++++..+.++.+. ...+......|..+|.. .++ +++..+++. ....+...
T Consensus 181 ~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~------~pl~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l 249 (987)
T PRK09782 181 GKTLRTDLLQRAIYLKQWSQADTLYNEARQQ------NTLSAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQS 249 (987)
T ss_pred cHHHHHHHHHHHHHHhCHHHHHHHHHHHHhc------CCCCHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHH
Confidence 4334444 67778888888888877766543 22334446667778887 477 888888553 22356778
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHcCCC-CCcchHHH------------------------------HHHHHhc----
Q 010342 142 CGHMIDSLCRSGRNHGASRVVYVMRKRGLT-PSLVSYNS------------------------------IVHGLCK---- 186 (512)
Q Consensus 142 ~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~-p~~~~~~~------------------------------l~~~~~~---- 186 (512)
+..+...|.+.|+.++|.++++.+...-.. |...+|.. ++..+.+
T Consensus 250 ~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (987)
T PRK09782 250 RITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQY 329 (987)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHH
Confidence 889999999999999999999997543211 22122110 1112222
Q ss_pred -----------------------------------------------------------cCchhHHHHHHHHHHhC--CC
Q 010342 187 -----------------------------------------------------------HGGCMRAYQLLEEGIQF--GY 205 (512)
Q Consensus 187 -----------------------------------------------------------~~~~~~a~~~~~~~~~~--~~ 205 (512)
.|+.++|.++++..... ..
T Consensus 330 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 409 (987)
T PRK09782 330 DAAQKLLATLPANEMLEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDA 409 (987)
T ss_pred HHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCccc
Confidence 33344444444444331 01
Q ss_pred CCchhhHHHHHHHHhccCC---HHHHHHH----------------------HHHHHhC--CCCC--CcccHHHHHHHHHc
Q 010342 206 LPSEHTYKVLVEGLCGESD---LEKARKV----------------------LQFMLSK--KDVD--RTRICNIYLRALCL 256 (512)
Q Consensus 206 ~~~~~~~~~l~~~~~~~g~---~~~a~~~----------------------~~~~~~~--~~~~--~~~~~~~l~~~~~~ 256 (512)
.++.....-++..|.+.+. ...+..+ ++.+... ..++ ....+..+..++..
T Consensus 410 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~ 489 (987)
T PRK09782 410 RLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD 489 (987)
T ss_pred ccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh
Confidence 1223334456666666655 2223222 1111111 1233 45567777777776
Q ss_pred cCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCCHHHHHH
Q 010342 257 IKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALN 336 (512)
Q Consensus 257 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 336 (512)
+++++|...+....... |+......+...+...|++++|...|+++... +|+...+..+...+.+.|+.++|..
T Consensus 490 -~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~---~p~~~a~~~la~all~~Gd~~eA~~ 563 (987)
T PRK09782 490 -TLPGVALYAWLQAEQRQ--PDAWQHRAVAYQAYQVEDYATALAAWQKISLH---DMSNEDLLAAANTAQAAGNGAARDR 563 (987)
T ss_pred -CCcHHHHHHHHHHHHhC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc---CCCcHHHHHHHHHHHHCCCHHHHHH
Confidence 78888999888777664 45444444455567899999999999998654 3444556677788899999999999
Q ss_pred HHHhhcccCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCC
Q 010342 337 LLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPS 416 (512)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 416 (512)
.+.+.+... +++...+..+.......|++++|...+++..+. .|+...+..+..++.+.|++++|...+++.....
T Consensus 564 ~l~qAL~l~--P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~ 639 (987)
T PRK09782 564 WLQQAEQRG--LGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALELE 639 (987)
T ss_pred HHHHHHhcC--CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 999876443 333333334444455669999999999999985 4678889999999999999999999999999875
Q ss_pred CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh
Q 010342 417 NIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDA 491 (512)
Q Consensus 417 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~ 491 (512)
+.+...+..+..++...|++++|+..+++..+..+ -+...+..+..++...|++++|+..+++..+ +.|+.
T Consensus 640 -Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P-~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~--l~P~~ 710 (987)
T PRK09782 640 -PNNSNYQAALGYALWDSGDIAQSREMLERAHKGLP-DDPALIRQLAYVNQRLDDMAATQHYARLVID--DIDNQ 710 (987)
T ss_pred -CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCC
Confidence 66777889999999999999999999999998753 3678899999999999999999999999987 45654
No 21
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.89 E-value=9.2e-18 Score=162.23 Aligned_cols=430 Identities=11% Similarity=0.041 Sum_probs=248.5
Q ss_pred ccccCcHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChh-hHHHH--HHHHHhcCCh
Q 010342 4 LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSL-TYSVL--VRGVLRTRDV 80 (512)
Q Consensus 4 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~-~~~~l--~~~~~~~~~~ 80 (512)
..++|+++.|+..|++..+..+.-.+..+ .++..+...|+.++|+..+++... |+.. .+..+ ...+...|++
T Consensus 44 ~~r~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~----p~n~~~~~llalA~ly~~~gdy 118 (822)
T PRK14574 44 RARAGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQS----SMNISSRGLASAARAYRNEKRW 118 (822)
T ss_pred HHhCCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhcc----CCCCCHHHHHHHHHHHHHcCCH
Confidence 35788888888888888876332112233 777777788888888888888872 3222 22222 4567777888
Q ss_pred hhHHHHHHHHHHHhhhcCCCCcchHhHHHHHHHHHccCChhHHHHHHHhcCCCCCCCcchhHHHHHHHHHhcCChhhHHH
Q 010342 81 ERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASR 160 (512)
Q Consensus 81 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 160 (512)
++|.++++++++..|.. ...+..++..+...++.++|++.++++.... |+...+..++..+...++..+|++
T Consensus 119 d~Aiely~kaL~~dP~n------~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~d--p~~~~~l~layL~~~~~~~~~AL~ 190 (822)
T PRK14574 119 DQALALWQSSLKKDPTN------PDLISGMIMTQADAGRGGVVLKQATELAERD--PTVQNYMTLSYLNRATDRNYDALQ 190 (822)
T ss_pred HHHHHHHHHHHhhCCCC------HHHHHHHHHHHhhcCCHHHHHHHHHHhcccC--cchHHHHHHHHHHHhcchHHHHHH
Confidence 88888888877654432 3444566777888888888888888887765 334444444444444566656888
Q ss_pred HHHHHHHcCCCCCcchHHHHHHHHhccCchhHHHHHHHHHHhCCCCCchhhH------HHHHHHH---h--ccCC---HH
Q 010342 161 VVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTY------KVLVEGL---C--GESD---LE 226 (512)
Q Consensus 161 ~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~------~~l~~~~---~--~~g~---~~ 226 (512)
.++++.+..+. +...+..+..++.+.|-...|+++..+-... +.+....+ ..+++.- . .... .+
T Consensus 191 ~~ekll~~~P~-n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d 268 (822)
T PRK14574 191 ASSEAVRLAPT-SEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIAD 268 (822)
T ss_pred HHHHHHHhCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHH
Confidence 88888876422 5566677777888888877777766542210 11111000 1111100 0 1111 23
Q ss_pred HHHHHHHHHHhCC--CCCCc----ccHHHHHHHHHccCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 010342 227 KARKVLQFMLSKK--DVDRT----RICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300 (512)
Q Consensus 227 ~a~~~~~~~~~~~--~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 300 (512)
.|..-++.+...- .++.. ....-.+-++...+++.++++.++.+...+.+....+-..+..+|...+.+++|..
T Consensus 269 ~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~ 348 (822)
T PRK14574 269 KALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAP 348 (822)
T ss_pred HHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHH
Confidence 3444444443311 11111 12223445556666677777777777666654445566666677777777777777
Q ss_pred HHHHHhhCCC----CCCcHHHHHHHHHHHhhcCCHHHHHHHHHhhcccCCC----------CCCh---hhHHHHHHHHHc
Q 010342 301 VLNDMVAGKF----CAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGY----------SPGI---VTYNAVLRGLFR 363 (512)
Q Consensus 301 ~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----------~~~~---~~~~~l~~~~~~ 363 (512)
+++.+..... .+++......|..++...+++++|..+++++...... .|++ ..+..++..+..
T Consensus 349 l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~ 428 (822)
T PRK14574 349 ILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVA 428 (822)
T ss_pred HHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHH
Confidence 7776654321 1223333456666677777777777766665432110 1111 122334455566
Q ss_pred cCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHH
Q 010342 364 LRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHF 443 (512)
Q Consensus 364 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 443 (512)
.|++.+|++.++++.... |-|......+.+.+...|.+.+|++.++...... +.+..+....+.++...|++.+|..+
T Consensus 429 ~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~-P~~~~~~~~~~~~al~l~e~~~A~~~ 506 (822)
T PRK14574 429 LNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVESLA-PRSLILERAQAETAMALQEWHQMELL 506 (822)
T ss_pred cCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhC-CccHHHHHHHHHHHHhhhhHHHHHHH
Confidence 666666666666666543 5566666666666666666666666665554432 44455555666666666666666666
Q ss_pred HHHHHHC
Q 010342 444 LYELVDS 450 (512)
Q Consensus 444 ~~~~~~~ 450 (512)
.+.+.+.
T Consensus 507 ~~~l~~~ 513 (822)
T PRK14574 507 TDDVISR 513 (822)
T ss_pred HHHHHhh
Confidence 6666554
No 22
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.89 E-value=3.3e-18 Score=168.69 Aligned_cols=426 Identities=12% Similarity=0.040 Sum_probs=258.9
Q ss_pred ChHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHHHhhhcCCCCcchHhH
Q 010342 28 NVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAF 107 (512)
Q Consensus 28 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 107 (512)
++....-.+......|+.++|++++.+..... +.+...+..+..++...|++++|...+++++...|. +...+
T Consensus 14 ~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~------~~~a~ 86 (765)
T PRK10049 14 SNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQ------NDDYQ 86 (765)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHH
Confidence 45555666777778888888888888887522 344556777888888888888888887777654222 23445
Q ss_pred HHHHHHHHccCChhHHHHHHHhcCCCCCCCcchhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHhcc
Q 010342 108 ANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKH 187 (512)
Q Consensus 108 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~ 187 (512)
..++..+...|++++|...+++.....+ .+.. +..+..++...|+.++|...++++.+..+. +...+..+..++...
T Consensus 87 ~~la~~l~~~g~~~eA~~~l~~~l~~~P-~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~-~~~~~~~la~~l~~~ 163 (765)
T PRK10049 87 RGLILTLADAGQYDEALVKAKQLVSGAP-DKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQ-TQQYPTEYVQALRNN 163 (765)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHC
Confidence 5666777777777777777777766543 2333 666667777777777777777777765332 344555566666667
Q ss_pred CchhHHHHHHHHHHhCCCCCch------hhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCCh-
Q 010342 188 GGCMRAYQLLEEGIQFGYLPSE------HTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNP- 260 (512)
Q Consensus 188 ~~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~- 260 (512)
+..+.|++.++.+.. .|+. .....++......+. ...+++
T Consensus 164 ~~~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~------------------------------~~~~r~~ 210 (765)
T PRK10049 164 RLSAPALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTR------------------------------SEKERYA 210 (765)
T ss_pred CChHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhccccc------------------------------ChhHHHH
Confidence 777777777665543 2221 001111111110000 001111
Q ss_pred --hhHHHHHHHHHhc-CCCCChh-hHH----HHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCCHH
Q 010342 261 --TELLNVLVFMLQT-QCQPDVI-TLN----TVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQ 332 (512)
Q Consensus 261 --~~a~~~~~~~~~~-~~~~~~~-~~~----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 332 (512)
++|+..++.+.+. ...|+.. .+. ..+..+...|++++|+..|+.+.+.+...|+. ....+...+...|+++
T Consensus 211 ~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e 289 (765)
T PRK10049 211 IADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPE 289 (765)
T ss_pred HHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcH
Confidence 3444444444432 1112111 111 11233445577777777777777654211222 2222456677777777
Q ss_pred HHHHHHHhhcccCCCCC--ChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCC-----------CCC---hHhHHHHHHHH
Q 010342 333 EALNLLYQVMPQRGYSP--GIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGV-----------VAD---STTYAIVIDGL 396 (512)
Q Consensus 333 ~a~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----------~~~---~~~~~~l~~~~ 396 (512)
+|+..|.+.+......+ .......+..++...|++++|..+++.+.+... .|+ ...+..+...+
T Consensus 290 ~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l 369 (765)
T PRK10049 290 KAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVA 369 (765)
T ss_pred HHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHH
Confidence 77777777553322111 123344555566777778888777777766420 122 12345566777
Q ss_pred HhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHH
Q 010342 397 CESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAY 476 (512)
Q Consensus 397 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~ 476 (512)
...|++++|.++++++.... +.+...+..++..+...|++++|++.+++..+.. +.+...+...+..+.+.|++++|.
T Consensus 370 ~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~-Pd~~~l~~~~a~~al~~~~~~~A~ 447 (765)
T PRK10049 370 KYSNDLPQAEMRARELAYNA-PGNQGLRIDYASVLQARGWPRAAENELKKAEVLE-PRNINLEVEQAWTALDLQEWRQMD 447 (765)
T ss_pred HHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHHHhCCHHHHH
Confidence 88888888888888887654 5667788888888888888888888888888764 224566667777888888888888
Q ss_pred HHHHHHHHCCCCCChHHHHHHHHhh
Q 010342 477 QILREMRKNGLNPDAVTWRILDKLH 501 (512)
Q Consensus 477 ~~~~~m~~~~~~p~~~~~~~l~~~~ 501 (512)
.+++++++ ..|+......|-+.+
T Consensus 448 ~~~~~ll~--~~Pd~~~~~~~~~~~ 470 (765)
T PRK10049 448 VLTDDVVA--REPQDPGVQRLARAR 470 (765)
T ss_pred HHHHHHHH--hCCCCHHHHHHHHHH
Confidence 88888887 456655544444333
No 23
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.89 E-value=4.6e-18 Score=167.68 Aligned_cols=403 Identities=10% Similarity=-0.007 Sum_probs=259.5
Q ss_pred ccccCcHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhhH
Q 010342 4 LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERA 83 (512)
Q Consensus 4 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a 83 (512)
....|+.++|++++.+..... +.+...+..+...+.+.|++++|..++++..+.. +.+...+..+..++...|+.++|
T Consensus 25 a~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~~g~~~eA 102 (765)
T PRK10049 25 ALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLADAGQYDEA 102 (765)
T ss_pred HHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHH
Confidence 456899999999999998742 3356679999999999999999999999998763 34567788888899999999999
Q ss_pred HHHHHHHHHHhhhcCCCCcchHhHHHHHHHHHccCChhHHHHHHHhcCCCCCCCcchhHHHHHHHHHhcCChhhHHHHHH
Q 010342 84 NVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVY 163 (512)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 163 (512)
...+.++++..|.. .. +..+..++...|+.++|...++++.+..+. +...+..+..++...+..+.|++.++
T Consensus 103 ~~~l~~~l~~~P~~------~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~-~~~~~~~la~~l~~~~~~e~Al~~l~ 174 (765)
T PRK10049 103 LVKAKQLVSGAPDK------AN-LLALAYVYKRAGRHWDELRAMTQALPRAPQ-TQQYPTEYVQALRNNRLSAPALGAID 174 (765)
T ss_pred HHHHHHHHHhCCCC------HH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCChHHHHHHHH
Confidence 99998887653332 33 777888999999999999999999887653 44555667888888999999999887
Q ss_pred HHHHcCCCCCc------chHHHHHHHHhc-----cCch---hHHHHHHHHHHhC-CCCCchh-hHH----HHHHHHhccC
Q 010342 164 VMRKRGLTPSL------VSYNSIVHGLCK-----HGGC---MRAYQLLEEGIQF-GYLPSEH-TYK----VLVEGLCGES 223 (512)
Q Consensus 164 ~~~~~g~~p~~------~~~~~l~~~~~~-----~~~~---~~a~~~~~~~~~~-~~~~~~~-~~~----~l~~~~~~~g 223 (512)
.... .|+. .....+++.... .+++ ++|++.++.+.+. ...|+.. .+. ..+..+...|
T Consensus 175 ~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g 251 (765)
T PRK10049 175 DANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARD 251 (765)
T ss_pred hCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhh
Confidence 6664 2331 011112222211 1122 4455555555532 1112111 110 0012233445
Q ss_pred CHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 010342 224 DLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303 (512)
Q Consensus 224 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 303 (512)
++++|...|+.+...+.+. |+. ....+...|...|++++|+..|+
T Consensus 252 ~~~eA~~~~~~ll~~~~~~----------------------------------P~~-a~~~la~~yl~~g~~e~A~~~l~ 296 (765)
T PRK10049 252 RYKDVISEYQRLKAEGQII----------------------------------PPW-AQRWVASAYLKLHQPEKAQSILT 296 (765)
T ss_pred hHHHHHHHHHHhhccCCCC----------------------------------CHH-HHHHHHHHHHhcCCcHHHHHHHH
Confidence 5555555555554432110 111 11113445555555555555555
Q ss_pred HHhhCCCCCC--cHHHHHHHHHHHhhcCCHHHHHHHHHhhcccCC----------CCCCh---hhHHHHHHHHHccCCHH
Q 010342 304 DMVAGKFCAP--DAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRG----------YSPGI---VTYNAVLRGLFRLRRVE 368 (512)
Q Consensus 304 ~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----------~~~~~---~~~~~l~~~~~~~~~~~ 368 (512)
++.......+ .......+..++...|++++|...+.++..... ..|+. ..+..+...+...|+++
T Consensus 297 ~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~ 376 (765)
T PRK10049 297 ELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLP 376 (765)
T ss_pred HHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHH
Confidence 5543321000 122334444455555666666655555432211 12231 23455666777888999
Q ss_pred HHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010342 369 EAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELV 448 (512)
Q Consensus 369 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 448 (512)
+|+.+++++.... |.+...+..+...+...|++++|++.+++++... +.+...+..++..+...|++++|..++++++
T Consensus 377 eA~~~l~~al~~~-P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~-Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll 454 (765)
T PRK10049 377 QAEMRARELAYNA-PGNQGLRIDYASVLQARGWPRAAENELKKAEVLE-PRNINLEVEQAWTALDLQEWRQMDVLTDDVV 454 (765)
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 9999988888763 5667788888888888899999999999887754 4456677777778888889999999998888
Q ss_pred HCCCCCChhh
Q 010342 449 DSGVTPNIVC 458 (512)
Q Consensus 449 ~~~~~p~~~~ 458 (512)
+. .|+...
T Consensus 455 ~~--~Pd~~~ 462 (765)
T PRK10049 455 AR--EPQDPG 462 (765)
T ss_pred Hh--CCCCHH
Confidence 75 455443
No 24
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.89 E-value=4.6e-18 Score=164.78 Aligned_cols=369 Identities=10% Similarity=-0.020 Sum_probs=250.3
Q ss_pred HHHHHHHHHccCChhHHHHHHHhcCCCCCCCcchhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHhc
Q 010342 107 FANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCK 186 (512)
Q Consensus 107 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~ 186 (512)
+......+.+.|++++|+..|++..... |+...|..+..+|.+.|++++|.+.+....+.... +...|..+..++..
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~~--p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~-~~~a~~~~a~a~~~ 206 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIECK--PDPVYYSNRAACHNALGDWEKVVEDTTAALELDPD-YSKALNRRANAYDG 206 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHH
Confidence 3345566667777777777777665543 34556666667777777777777777776665322 44566666777777
Q ss_pred cCchhHHHHHHHHHHhCCC-----------------------------CCchhhHHHHHHHHh-----------------
Q 010342 187 HGGCMRAYQLLEEGIQFGY-----------------------------LPSEHTYKVLVEGLC----------------- 220 (512)
Q Consensus 187 ~~~~~~a~~~~~~~~~~~~-----------------------------~~~~~~~~~l~~~~~----------------- 220 (512)
.|++++|+..|..+...+. +++...+..+...+.
T Consensus 207 lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (615)
T TIGR00990 207 LGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNEL 286 (615)
T ss_pred cCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhccccc
Confidence 7777777655544332110 111111111111110
Q ss_pred -------------------ccCCHHHHHHHHHHHHhCC--CCCCcccHHHHHHHHHccCChhhHHHHHHHHHhcCCCCCh
Q 010342 221 -------------------GESDLEKARKVLQFMLSKK--DVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDV 279 (512)
Q Consensus 221 -------------------~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 279 (512)
..+++++|.+.|+...+.+ .+.....+..+...+...|++++|+..++..++..+. ..
T Consensus 287 ~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~-~~ 365 (615)
T TIGR00990 287 DEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPR-VT 365 (615)
T ss_pred ccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cH
Confidence 0135677888888877654 2233446777777888888999999988888876432 45
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhhcccCCCCCChhhHHHHHH
Q 010342 280 ITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLR 359 (512)
Q Consensus 280 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 359 (512)
..|..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|...|.+.+... +.+...+..+..
T Consensus 366 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~--P~~~~~~~~la~ 441 (615)
T TIGR00990 366 QSYIKRASMNLELGDPDKAEEDFDKALKLN--SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD--PDFIFSHIQLGV 441 (615)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--ccCHHHHHHHHH
Confidence 577778888888899999999988887765 5667788888888888899999999888876443 344566777778
Q ss_pred HHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHH------hHHHHHHHHHh
Q 010342 360 GLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNY------VYAAMIKGLCR 433 (512)
Q Consensus 360 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~------~~~~l~~~~~~ 433 (512)
.+.+.|++++|+..|++..+.. +.+...++.+..++...|++++|...|++.+......+.. .++..+..+..
T Consensus 442 ~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~ 520 (615)
T TIGR00990 442 TQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQW 520 (615)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHH
Confidence 8888899999999998888753 5567788888888888999999999988887653211111 11222223334
Q ss_pred cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 010342 434 SGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKN 485 (512)
Q Consensus 434 ~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 485 (512)
.|++++|.+.+++..+..+ .+...+..+...+.+.|++++|.+.|++..+.
T Consensus 521 ~~~~~eA~~~~~kAl~l~p-~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 521 KQDFIEAENLCEKALIIDP-ECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred hhhHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 6888899998888877642 24456788888888899999999988888763
No 25
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.89 E-value=1.7e-17 Score=160.33 Aligned_cols=445 Identities=11% Similarity=0.059 Sum_probs=324.0
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCh--hhHHHHHHHHHhcCChhhHHHHHHHHHHHhhhcCCCCcchHhHH
Q 010342 31 SYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNS--LTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFA 108 (512)
Q Consensus 31 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (512)
+-..-+-...+.|+++.|+..|++..+. .|+. ..+ .++..+...|+.++|...+++... ..........
T Consensus 36 ~~y~~aii~~r~Gd~~~Al~~L~qaL~~--~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~------p~n~~~~~ll 106 (822)
T PRK14574 36 TQYDSLIIRARAGDTAPVLDYLQEESKA--GPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQS------SMNISSRGLA 106 (822)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhh--CccchhhHH-HHHHHHHHcCCcHHHHHHHHHhcc------CCCCCHHHHH
Confidence 3344444567899999999999999986 3554 234 888888889999999988877751 1122233344
Q ss_pred HHHHHHHccCChhHHHHHHHhcCCCCCCCcchhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHhccC
Q 010342 109 NLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHG 188 (512)
Q Consensus 109 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~ 188 (512)
.+...+...|++++|+++++++.+..+. +...+..++..+...++.++|++.++.+... .|+...+..++..+...+
T Consensus 107 alA~ly~~~gdyd~Aiely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~ 183 (822)
T PRK14574 107 SAARAYRNEKRWDQALALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATD 183 (822)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcc
Confidence 4466888999999999999999988763 3566677889999999999999999999886 455556655555555566
Q ss_pred chhHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCcc-----cHHHHHHHHH-----ccC
Q 010342 189 GCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTR-----ICNIYLRALC-----LIK 258 (512)
Q Consensus 189 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-----~~~~l~~~~~-----~~~ 258 (512)
+..+|++.++++.+.. +.+...+..+.....+.|-...|.++.+.-...-...+.. .....++.-. ...
T Consensus 184 ~~~~AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~ 262 (822)
T PRK14574 184 RNYDALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETE 262 (822)
T ss_pred hHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchh
Confidence 7767999999999875 5577788888999999999999998876543111111100 0111111100 111
Q ss_pred C---hhhHHHHHHHHHhc-CCCCCh-hhH----HHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcC
Q 010342 259 N---PTELLNVLVFMLQT-QCQPDV-ITL----NTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVG 329 (512)
Q Consensus 259 ~---~~~a~~~~~~~~~~-~~~~~~-~~~----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 329 (512)
+ .+.++.-++.+... +..|.. ..| .-.+-++...|++.++++.|+.+...+. +....+-.++..+|...+
T Consensus 263 r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~-~~P~y~~~a~adayl~~~ 341 (822)
T PRK14574 263 RFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGY-KMPDYARRWAASAYIDRR 341 (822)
T ss_pred hHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCC-CCCHHHHHHHHHHHHhcC
Confidence 2 23455555555542 222322 122 2345677888999999999999998764 334557889999999999
Q ss_pred CHHHHHHHHHhhcccCC----CCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCC-----------CCCh---HhHHH
Q 010342 330 RIQEALNLLYQVMPQRG----YSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGV-----------VADS---TTYAI 391 (512)
Q Consensus 330 ~~~~a~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----------~~~~---~~~~~ 391 (512)
++++|..++.++....+ .+++......|..++...+++++|..+++.+.+... .|++ ..+..
T Consensus 342 ~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l 421 (822)
T PRK14574 342 LPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTL 421 (822)
T ss_pred CcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHH
Confidence 99999999999776543 123344457789999999999999999999987311 1222 13445
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCC
Q 010342 392 VIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSM 471 (512)
Q Consensus 392 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 471 (512)
++..+...|++.+|++.++++.... |-|......+...+...|.+.+|.+.++...... +-+..+....+.++...|+
T Consensus 422 ~a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~-P~~~~~~~~~~~~al~l~e 499 (822)
T PRK14574 422 LVQSLVALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVESLA-PRSLILERAQAETAMALQE 499 (822)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhC-CccHHHHHHHHHHHHhhhh
Confidence 6778889999999999999998765 7799999999999999999999999998777663 3356777788899999999
Q ss_pred HHHHHHHHHHHHHCCCCCChHH
Q 010342 472 KREAYQILREMRKNGLNPDAVT 493 (512)
Q Consensus 472 ~~~a~~~~~~m~~~~~~p~~~~ 493 (512)
+++|..+.+.+.. ..|+...
T Consensus 500 ~~~A~~~~~~l~~--~~Pe~~~ 519 (822)
T PRK14574 500 WHQMELLTDDVIS--RSPEDIP 519 (822)
T ss_pred HHHHHHHHHHHHh--hCCCchh
Confidence 9999999988876 4565443
No 26
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.88 E-value=2.4e-18 Score=159.34 Aligned_cols=477 Identities=10% Similarity=0.027 Sum_probs=353.3
Q ss_pred CcHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCC--CChhhHHHHHHHHHhcCChhhHHH
Q 010342 8 SRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVL--PNSLTYSVLVRGVLRTRDVERANV 85 (512)
Q Consensus 8 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~ 85 (512)
..+..+..++.+.-..+.. |+.+.+.|...|.-.|++..+..+...+...... .-...|..+.+++-..|++++|..
T Consensus 250 ~s~~~~~~ll~~ay~~n~~-nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~ 328 (1018)
T KOG2002|consen 250 DSYKKGVQLLQRAYKENNE-NPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFK 328 (1018)
T ss_pred HHHHHHHHHHHHHHhhcCC-CcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHH
Confidence 3456677777776665433 7888999999999999999999999998875311 123457788899999999999999
Q ss_pred HHHHHHHHhhhcCCCCcchHhHHHHHHHHHccCChhHHHHHHHhcCCCCCCCcchhHHHHHHHHHhcC----ChhhHHHH
Q 010342 86 LMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSG----RNHGASRV 161 (512)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~a~~~ 161 (512)
.|.+.....+.. -...+-.|.+.+.+.|+++.+...|+.+....+ ....+...|...|...+ ..+.|..+
T Consensus 329 yY~~s~k~~~d~-----~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p-~~~etm~iLG~Lya~~~~~~~~~d~a~~~ 402 (1018)
T KOG2002|consen 329 YYMESLKADNDN-----FVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLP-NNYETMKILGCLYAHSAKKQEKRDKASNV 402 (1018)
T ss_pred HHHHHHccCCCC-----ccccccchhHHHHHhchHHHHHHHHHHHHHhCc-chHHHHHHHHhHHHhhhhhhHHHHHHHHH
Confidence 887765432221 123344588999999999999999999887654 34455566666666664 45667777
Q ss_pred HHHHHHcCCCCCcchHHHHHHHHhccCchhHHHHHHHHHH----hCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHh
Q 010342 162 VYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGI----QFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLS 237 (512)
Q Consensus 162 ~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 237 (512)
+....+.- +.|...|..+...+....-+.. +..|..+. ..+..+.+...+.+...+...|+++.|...|.....
T Consensus 403 l~K~~~~~-~~d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~ 480 (1018)
T KOG2002|consen 403 LGKVLEQT-PVDSEAWLELAQLLEQTDPWAS-LDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALG 480 (1018)
T ss_pred HHHHHhcc-cccHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhh
Confidence 77766653 3367788888777766554444 77776554 345567888999999999999999999999998876
Q ss_pred C---CCCCCc------ccHHHHHHHHHccCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 010342 238 K---KDVDRT------RICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAG 308 (512)
Q Consensus 238 ~---~~~~~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 308 (512)
. ...++. .+-..+....-..++++.|...|..+.+..+. =+..|--+.......+...+|...+......
T Consensus 481 ~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~-YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~ 559 (1018)
T KOG2002|consen 481 KLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPG-YIDAYLRLGCMARDKNNLYEASLLLKDALNI 559 (1018)
T ss_pred hhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCch-hHHHHHHhhHHHHhccCcHHHHHHHHHHHhc
Confidence 5 111121 12344556666788999999999999887422 1223333332333447788999999999887
Q ss_pred CCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHc------------cCCHHHHHHHHHH
Q 010342 309 KFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR------------LRRVEEAKEVFNC 376 (512)
Q Consensus 309 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~------------~~~~~~a~~~~~~ 376 (512)
. ..++..++.+...+.....+..|.+-|..........+|+.+.-.|...|.+ .+..++|+++|.+
T Consensus 560 d--~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~k 637 (1018)
T KOG2002|consen 560 D--SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGK 637 (1018)
T ss_pred c--cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHH
Confidence 6 5666777778888999999998988777776666556777776667765543 3457789999999
Q ss_pred HHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCC
Q 010342 377 MLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDS-GVTPN 455 (512)
Q Consensus 377 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~p~ 455 (512)
.++.. |-|...-+.+.-+++..|++..|..+|..+.+.. .....+|-.+.++|..+|++..|+++|+...+. ...-+
T Consensus 638 vL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~-~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~ 715 (1018)
T KOG2002|consen 638 VLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREAT-SDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNR 715 (1018)
T ss_pred HHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHH-hhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Confidence 99875 6788888999999999999999999999998764 334558889999999999999999999887654 44557
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHH
Q 010342 456 IVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILD 498 (512)
Q Consensus 456 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~ 498 (512)
..+...|.+++.+.|.+.+|.+.+.........-..+.|+..+
T Consensus 716 ~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~ 758 (1018)
T KOG2002|consen 716 SEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLAL 758 (1018)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHH
Confidence 7889999999999999999999988887643222234455443
No 27
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.83 E-value=1.3e-17 Score=141.78 Aligned_cols=463 Identities=11% Similarity=0.077 Sum_probs=318.8
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHH-HHHHHHhcCChhhHHHHHHHHHHHhhhcCCCCcchHhHHHH
Q 010342 32 YTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSV-LVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANL 110 (512)
Q Consensus 32 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~-l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l 110 (512)
...|.+.|..+..+.+|+..++-+.+...-|+...+.. +...+.+.+.+.+|+..++-.+++.|.- +........+.+
T Consensus 204 l~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsi-nk~~rikil~ni 282 (840)
T KOG2003|consen 204 LFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSI-NKDMRIKILNNI 282 (840)
T ss_pred HHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhcccc-chhhHHHHHhhc
Confidence 34456667777788999999999988877787765433 4567888999999999998888876653 223333456666
Q ss_pred HHHHHccCChhHHHHHHHhcCCCCCCCcchhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCcc------------hHH
Q 010342 111 VDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLV------------SYN 178 (512)
Q Consensus 111 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~------------~~~ 178 (512)
.-.+.+.|.++.|+..|+.+.+.. |+..+-..|+-++..-|+.+...+.|.+|..-...||.. ..+
T Consensus 283 gvtfiq~gqy~dainsfdh~m~~~--pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~ 360 (840)
T KOG2003|consen 283 GVTFIQAGQYDDAINSFDHCMEEA--PNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLN 360 (840)
T ss_pred CeeEEecccchhhHhhHHHHHHhC--ccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHH
Confidence 677889999999999999987765 555554456777778899999999999997653333322 222
Q ss_pred HH-----HHHHhccC--chhHHHHHHHHHHhCCCCCchh-----hHHH----------------HHHHHhccCCHHHHHH
Q 010342 179 SI-----VHGLCKHG--GCMRAYQLLEEGIQFGYLPSEH-----TYKV----------------LVEGLCGESDLEKARK 230 (512)
Q Consensus 179 ~l-----~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~-----~~~~----------------l~~~~~~~g~~~~a~~ 230 (512)
.. ++..-+.+ +.++++-.-.+++.--+.|+-. .... -.-.+.+.|+++.|.+
T Consensus 361 eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aie 440 (840)
T KOG2003|consen 361 EAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIE 440 (840)
T ss_pred HHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHH
Confidence 22 22222211 1222222222333222233211 1111 1224678899999999
Q ss_pred HHHHHHhCCCCCCcccHHHHHHHHHc--cCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 010342 231 VLQFMLSKKDVDRTRICNIYLRALCL--IKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAG 308 (512)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 308 (512)
+++-+.+++....+..-+.+-..+.- -.++..|.+.-+..+... .-+......-.+.-...|++++|.+.+++....
T Consensus 441 ilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~ykeal~n 519 (840)
T KOG2003|consen 441 ILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAEFYKEALNN 519 (840)
T ss_pred HHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHHHHHHHHcC
Confidence 99998876655544444443333322 445666666666555332 112222222223334568999999999998854
Q ss_pred CCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHh
Q 010342 309 KFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTT 388 (512)
Q Consensus 309 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 388 (512)
.. .-....-.+.-.+-..|+.++|++.|.+.- .-+..+......+...|-...+...|++++.+.... ++.|+.+
T Consensus 520 da--sc~ealfniglt~e~~~~ldeald~f~klh--~il~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~i 594 (840)
T KOG2003|consen 520 DA--SCTEALFNIGLTAEALGNLDEALDCFLKLH--AILLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAI 594 (840)
T ss_pred ch--HHHHHHHHhcccHHHhcCHHHHHHHHHHHH--HHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHH
Confidence 31 112222223334667899999999987732 112345666777888888899999999999887764 5778889
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHH-
Q 010342 389 YAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGAC- 467 (512)
Q Consensus 389 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~- 467 (512)
...|.+.|-+.|+-..|.+.+-+--+ -++.+..+...|...|....-+++++.+|++..- ++|+..-|..++..|.
T Consensus 595 lskl~dlydqegdksqafq~~ydsyr-yfp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~r 671 (840)
T KOG2003|consen 595 LSKLADLYDQEGDKSQAFQCHYDSYR-YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFR 671 (840)
T ss_pred HHHHHHHhhcccchhhhhhhhhhccc-ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHH
Confidence 99999999999999999998776543 3577899999999999999999999999988654 5899999999887665
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHhhccCCCC
Q 010342 468 KLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRGND 507 (512)
Q Consensus 468 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~ 507 (512)
+.|++++|.++++...+. ++.|...+..|++.+...|-.
T Consensus 672 rsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl~ 710 (840)
T KOG2003|consen 672 RSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGLK 710 (840)
T ss_pred hcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccch
Confidence 589999999999998764 788889999999999888754
No 28
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.82 E-value=2.4e-14 Score=127.54 Aligned_cols=476 Identities=11% Similarity=0.022 Sum_probs=353.1
Q ss_pred cCcHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhhHHHH
Q 010342 7 LSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVL 86 (512)
Q Consensus 7 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 86 (512)
..+.++|+.++.+..+- .|. -.-|..+|++..-|+.|..++++.++. ++-+...|......--..|+.+....+
T Consensus 389 lE~~~darilL~rAvec--cp~---s~dLwlAlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~ki 462 (913)
T KOG0495|consen 389 LEEPEDARILLERAVEC--CPQ---SMDLWLALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKI 462 (913)
T ss_pred ccChHHHHHHHHHHHHh--ccc---hHHHHHHHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHH
Confidence 34555677777777765 222 133455677778889999999999874 566888888777777788999998888
Q ss_pred HHHHHHHhhhcCCCCcchHhHHHHHHHHHccCChhHHHHHHHhcCCCCCC--CcchhHHHHHHHHHhcCChhhHHHHHHH
Q 010342 87 MFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSV--NEEFACGHMIDSLCRSGRNHGASRVVYV 164 (512)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 164 (512)
+.+-+..+... ++..+...|-.=...|-+.|..-.+..+......-|+. ....+|..-...|.+.+.++-|..+|..
T Consensus 463 i~rgl~~L~~n-gv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~ 541 (913)
T KOG0495|consen 463 IDRGLSELQAN-GVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAH 541 (913)
T ss_pred HHHHHHHHhhc-ceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHH
Confidence 88888777766 77788777777778888888888888887776665543 2346788888889999999999999988
Q ss_pred HHHcCCCCCcchHHHHHHHHhccCchhHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCc
Q 010342 165 MRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRT 244 (512)
Q Consensus 165 ~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 244 (512)
..+--+ -+...|......--..|..+....+++++...- +.....|......+-..||...|..++....+. .+.+.
T Consensus 542 alqvfp-~k~slWlra~~~ek~hgt~Esl~Allqkav~~~-pkae~lwlM~ake~w~agdv~~ar~il~~af~~-~pnse 618 (913)
T KOG0495|consen 542 ALQVFP-CKKSLWLRAAMFEKSHGTRESLEALLQKAVEQC-PKAEILWLMYAKEKWKAGDVPAARVILDQAFEA-NPNSE 618 (913)
T ss_pred HHhhcc-chhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHh-CCCcH
Confidence 887532 255677777776667888899999999988753 455667777777778889999999999998864 44577
Q ss_pred ccHHHHHHHHHccCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHH
Q 010342 245 RICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFG 324 (512)
Q Consensus 245 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 324 (512)
.++...+........++.|..+|.+.... .|+...|..-++..--.++.++|++++++..+.. +.-...|-.+.+.
T Consensus 619 eiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~f--p~f~Kl~lmlGQi 694 (913)
T KOG0495|consen 619 EIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKSF--PDFHKLWLMLGQI 694 (913)
T ss_pred HHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhC--CchHHHHHHHhHH
Confidence 78888889999999999999999888765 5577777777777777789999999999888764 4556778888888
Q ss_pred HhhcCCHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHH
Q 010342 325 LLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDE 404 (512)
Q Consensus 325 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 404 (512)
+-+.++.+.|.+.|..-.+. ++-.+..|..+...--+.|.+-+|..++++..-.+ |-+...|-..|.+-.+.|+.+.
T Consensus 695 ~e~~~~ie~aR~aY~~G~k~--cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~ 771 (913)
T KOG0495|consen 695 EEQMENIEMAREAYLQGTKK--CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQ 771 (913)
T ss_pred HHHHHHHHHHHHHHHhcccc--CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHH
Confidence 88999999999988764432 24455667777777778889999999999888765 6678889999999999999999
Q ss_pred HHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 010342 405 AKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRK 484 (512)
Q Consensus 405 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 484 (512)
|..+..++++. .+.+...|..-|....+.++-....+.+++. .-|+.....+...|....++++|.+.|.+..+
T Consensus 772 a~~lmakALQe-cp~sg~LWaEaI~le~~~~rkTks~DALkkc-----e~dphVllaia~lfw~e~k~~kar~Wf~Ravk 845 (913)
T KOG0495|consen 772 AELLMAKALQE-CPSSGLLWAEAIWLEPRPQRKTKSIDALKKC-----EHDPHVLLAIAKLFWSEKKIEKAREWFERAVK 845 (913)
T ss_pred HHHHHHHHHHh-CCccchhHHHHHHhccCcccchHHHHHHHhc-----cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 99888887754 2555556666666665555544444444332 33555666666777777777777777777766
Q ss_pred CCCCCC-hHHHHHHHHhhccCCCC
Q 010342 485 NGLNPD-AVTWRILDKLHGNRGND 507 (512)
Q Consensus 485 ~~~~p~-~~~~~~l~~~~~~~g~~ 507 (512)
. .|| -.+|.-+.+.+...|.+
T Consensus 846 ~--d~d~GD~wa~fykfel~hG~e 867 (913)
T KOG0495|consen 846 K--DPDNGDAWAWFYKFELRHGTE 867 (913)
T ss_pred c--CCccchHHHHHHHHHHHhCCH
Confidence 3 343 35666666666666643
No 29
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.82 E-value=4.5e-15 Score=125.55 Aligned_cols=432 Identities=16% Similarity=0.140 Sum_probs=293.0
Q ss_pred hHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHh--cCChhhHHHHHHHHHHHhhhcCCCCcchHh
Q 010342 29 VVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLR--TRDVERANVLMFKLWERMKEEEDLSVNNAA 106 (512)
Q Consensus 29 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 106 (512)
+.+=|.|++. ..+|.+..+.-+|+.|...|+..+...-..|++...- ..+..-++ .+.+-.|...+.-+.. +
T Consensus 116 V~~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E---~~~Fv~~~~~~E~S~~--s 189 (625)
T KOG4422|consen 116 VETENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAE---WEEFVGMRNFGEDSTS--S 189 (625)
T ss_pred hcchhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchh---HHHHhhcccccccccc--c
Confidence 3345666654 4678999999999999999987777776666654332 33332221 1122223222111111 1
Q ss_pred HHHHHHHHHccCChhHHHHHHHhcCCCCCCCcchhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHhc
Q 010342 107 FANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCK 186 (512)
Q Consensus 107 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~ 186 (512)
-+.|.+.+ -+|+..+ .+..++..+|.++++-...+.|.+++++-.....+.+..+||.+|.+-.-
T Consensus 190 --------WK~G~vAd--L~~E~~P-----KT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~ 254 (625)
T KOG4422|consen 190 --------WKSGAVAD--LLFETLP-----KTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSY 254 (625)
T ss_pred --------cccccHHH--HHHhhcC-----CCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHh
Confidence 13344433 3444443 34468888999999988889999999888887777788888888876543
Q ss_pred cCchhHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCCHHHH----HHHHHHHHhCCCCCCcccHHHHHHHHHccCChhh
Q 010342 187 HGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKA----RKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTE 262 (512)
Q Consensus 187 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 262 (512)
.. -.++..+|.+..+.||..|+|+++.+.++.|+++.| .+++.+|++-|+.|....|..++..+++.+++.+
T Consensus 255 ~~----~K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k 330 (625)
T KOG4422|consen 255 SV----GKKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQK 330 (625)
T ss_pred hc----cHHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchh
Confidence 22 267888888888899999999999999998887664 5677778888899998899999988888887754
Q ss_pred -HHHHHHHHHhc----CCCC----ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCC---CCCCc---HHHHHHHHHHHhh
Q 010342 263 -LLNVLVFMLQT----QCQP----DVITLNTVINGFCKMGRIEEALKVLNDMVAGK---FCAPD---AVTFTTIIFGLLN 327 (512)
Q Consensus 263 -a~~~~~~~~~~----~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~---~~~~~~l~~~~~~ 327 (512)
+..++.++... .++| +...|..-+..|.+..+.+.|.++..-+.... .+.|+ ..-|..+....++
T Consensus 331 ~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq 410 (625)
T KOG4422|consen 331 VASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQ 410 (625)
T ss_pred hhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHH
Confidence 44444444432 1222 44556777888888899999988887766432 12232 2335566777788
Q ss_pred cCCHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcC-CH----
Q 010342 328 VGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESN-QL---- 402 (512)
Q Consensus 328 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~---- 402 (512)
....+.-..+|+.+. -.-+-|+..+...++++....+.++-.-++|.++...|...+......++..+++.. +.
T Consensus 411 ~es~~~~~~~Y~~lV-P~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~ 489 (625)
T KOG4422|consen 411 MESIDVTLKWYEDLV-PSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPE 489 (625)
T ss_pred HHHHHHHHHHHHHhc-cceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChH
Confidence 888888889888855 455677888888899999999999999999999988876655555555555555433 11
Q ss_pred ----------------HHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCChhhHH---HH
Q 010342 403 ----------------DEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSG-VTPNIVCYN---VV 462 (512)
Q Consensus 403 ----------------~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~p~~~~~~---~l 462 (512)
+....--.++.+. .......+..+-.+.+.|..++|.+++..+.+.+ --|-....+ -+
T Consensus 490 r~Ql~~~~ak~aad~~e~~e~~~~R~r~~--~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El 567 (625)
T KOG4422|consen 490 REQLQVAFAKCAADIKEAYESQPIRQRAQ--DWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAEL 567 (625)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHhc--cCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHH
Confidence 0011111222333 3445577888888999999999999999986543 233333444 56
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCC
Q 010342 463 IDGACKLSMKREAYQILREMRKNGLN 488 (512)
Q Consensus 463 ~~~~~~~g~~~~a~~~~~~m~~~~~~ 488 (512)
+....+.+.+..|...++-|...+.+
T Consensus 568 ~d~a~~~~spsqA~~~lQ~a~~~n~~ 593 (625)
T KOG4422|consen 568 MDSAKVSNSPSQAIEVLQLASAFNLP 593 (625)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCch
Confidence 66777888999999999998776543
No 30
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.82 E-value=1e-15 Score=129.34 Aligned_cols=444 Identities=14% Similarity=0.132 Sum_probs=280.0
Q ss_pred ccccCcHHHHHHHHHHHHhCCCCCChHhHHHHHHHHH--hcCChhH-HHHHHHHHHhCC-------------------CC
Q 010342 4 LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYC--RTGEMDV-AYKVFDEMRHCG-------------------VL 61 (512)
Q Consensus 4 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~-a~~~~~~m~~~~-------------------~~ 61 (512)
++.+|++.++--++++|.+.|.+.+...-..|...-+ .+.++.- -++.|-.|.+.| .+
T Consensus 125 mIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~vAdL~~E~~P 204 (625)
T KOG4422|consen 125 MISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAVADLLFETLP 204 (625)
T ss_pred HHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccHHHHHHhhcC
Confidence 4567899999999999999988877776666555432 2222221 133333343322 24
Q ss_pred CChhhHHHHHHHHHhcCChhhHHHHHHHHHHHhhhcCCCCcchHhHHHHHHHHHccCChhHHHHHHHhcCCCCCCCcchh
Q 010342 62 PNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFA 141 (512)
Q Consensus 62 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 141 (512)
.+..++.++|.+.++-...++|.+++.+.-. ........+||.+|.+-+-.-+ .+++.+|......||..+
T Consensus 205 KT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~-----~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm~Pnl~T 275 (625)
T KOG4422|consen 205 KTDETVSIMIAGLCKFSSLERARELYKEHRA-----AKGKVYREAFNGLIGASSYSVG----KKLVAEMISQKMTPNLFT 275 (625)
T ss_pred CCchhHHHHHHHHHHHHhHHHHHHHHHHHHH-----hhheeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhcCCchHh
Confidence 4677888999988888888888877655432 2567778888888876543322 677788888888899999
Q ss_pred HHHHHHHHHhcCChhh----HHHHHHHHHHcCCCCCcchHHHHHHHHhccCchhH-HHHHHHHHHh----CCCCC----c
Q 010342 142 CGHMIDSLCRSGRNHG----ASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMR-AYQLLEEGIQ----FGYLP----S 208 (512)
Q Consensus 142 ~~~l~~~~~~~~~~~~----a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~----~~~~~----~ 208 (512)
+|+++.+..+.|+++. |.+++.+|++-|+.|+..+|..+|..+.+.++..+ +..++.++.. ..++| |
T Consensus 276 fNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d 355 (625)
T KOG4422|consen 276 FNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTD 355 (625)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCch
Confidence 9999999888887765 45677888888999999999998888888777644 4444444432 22222 4
Q ss_pred hhhHHHHHHHHhccCCHHHHHHHHHHHHhCCC----CCC---cccHHHHHHHHHccCChhhHHHHHHHHHhcCCCCChhh
Q 010342 209 EHTYKVLVEGLCGESDLEKARKVLQFMLSKKD----VDR---TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVIT 281 (512)
Q Consensus 209 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~----~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 281 (512)
...|...+..|.+..|.+-|.++..-+..... .++ ..-|..+....|.....+....+|+.|.-.-+-|+..+
T Consensus 356 ~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~ 435 (625)
T KOG4422|consen 356 NKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQT 435 (625)
T ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchh
Confidence 45677778888888888888888776654321 111 22455666777788888888888888887777788888
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhhcccCCCCCChh---hHHHHH
Q 010342 282 LNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIV---TYNAVL 358 (512)
Q Consensus 282 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~~l~ 358 (512)
...++++..-.|.++-..+++..+...+. +++..+ -.+++.. +......|+.. -+....
T Consensus 436 m~~~lrA~~v~~~~e~ipRiw~D~~~~gh------t~r~~l-----------~eeil~~-L~~~k~hp~tp~r~Ql~~~~ 497 (625)
T KOG4422|consen 436 MIHLLRALDVANRLEVIPRIWKDSKEYGH------TFRSDL-----------REEILML-LARDKLHPLTPEREQLQVAF 497 (625)
T ss_pred HHHHHHHHhhcCcchhHHHHHHHHHHhhh------hhhHHH-----------HHHHHHH-HhcCCCCCCChHHHHHHHHH
Confidence 88888888888888888888888876442 111111 1111211 22222233222 222222
Q ss_pred HHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCC-CCCCHHhHH---HHHHHHHhc
Q 010342 359 RGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPS-NIHDNYVYA---AMIKGLCRS 434 (512)
Q Consensus 359 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~---~l~~~~~~~ 434 (512)
.-|+ ..-.+.....-.++.+.. ......+.+.-.+.+.|+.++|.+++.-+.+.+ -.|-....+ -+++.-...
T Consensus 498 ak~a-ad~~e~~e~~~~R~r~~~--~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~ 574 (625)
T KOG4422|consen 498 AKCA-ADIKEAYESQPIRQRAQD--WPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVS 574 (625)
T ss_pred HHHH-HHHHHHHHhhHHHHHhcc--CChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhc
Confidence 2221 111222233334444443 344456666667788888888888888874332 223333444 555666677
Q ss_pred CCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 010342 435 GKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQ 477 (512)
Q Consensus 435 g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~ 477 (512)
++...|..+++-+...+...-...-+-+...|.-...-.+++.
T Consensus 575 ~spsqA~~~lQ~a~~~n~~~~E~La~RI~e~f~iNqeq~~~ls 617 (625)
T KOG4422|consen 575 NSPSQAIEVLQLASAFNLPICEGLAQRIMEDFAINQEQKEALS 617 (625)
T ss_pred CCHHHHHHHHHHHHHcCchhhhHHHHHHHHhcCcCHHHHHHHh
Confidence 7888888888888766533333244444555544333334443
No 31
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.81 E-value=2.8e-14 Score=122.32 Aligned_cols=456 Identities=11% Similarity=0.057 Sum_probs=322.1
Q ss_pred ccCcHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCh-hhHHHHHHHHHhcCChhhHH
Q 010342 6 GLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNS-LTYSVLVRGVLRTRDVERAN 84 (512)
Q Consensus 6 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~ 84 (512)
.++++..|..+|++.+.-+.. +...|..-+..-.++.+...|..++++.... .|.+ ..|...+..--..|+...|.
T Consensus 85 sq~e~~RARSv~ERALdvd~r-~itLWlkYae~Emknk~vNhARNv~dRAvt~--lPRVdqlWyKY~ymEE~LgNi~gaR 161 (677)
T KOG1915|consen 85 SQKEIQRARSVFERALDVDYR-NITLWLKYAEFEMKNKQVNHARNVWDRAVTI--LPRVDQLWYKYIYMEEMLGNIAGAR 161 (677)
T ss_pred hHHHHHHHHHHHHHHHhcccc-cchHHHHHHHHHHhhhhHhHHHHHHHHHHHh--cchHHHHHHHHHHHHHHhcccHHHH
Confidence 356778889999988877543 6667888888888888999999999988774 4544 34666666667788888898
Q ss_pred HHHHHHHHHhhhcCCCCcchHhHHHHHHHHHccCChhHHHHHHHhcCCCCCCCcchhHHHHHHHHHhcCChhhHHHHHHH
Q 010342 85 VLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYV 164 (512)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 164 (512)
+++.+.. ...|+...+.+.++.-.+-+.++.|..++++..--+ |++.+|--..+.-.++|....+..+|+.
T Consensus 162 qiferW~-------~w~P~eqaW~sfI~fElRykeieraR~IYerfV~~H--P~v~~wikyarFE~k~g~~~~aR~Vyer 232 (677)
T KOG1915|consen 162 QIFERWM-------EWEPDEQAWLSFIKFELRYKEIERARSIYERFVLVH--PKVSNWIKYARFEEKHGNVALARSVYER 232 (677)
T ss_pred HHHHHHH-------cCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheec--ccHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 8887765 578888889999998889999999999998876654 7788888888888888998888888887
Q ss_pred HHHc-CC-CCCcchHHHHHHHHhccCchhHHHHHHHHHHhCCCCCc--hhhHHHHHHHHhccCCHHHHHHH--------H
Q 010342 165 MRKR-GL-TPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPS--EHTYKVLVEGLCGESDLEKARKV--------L 232 (512)
Q Consensus 165 ~~~~-g~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~--------~ 232 (512)
..+. |- .-+...+.+...-=..+..++.|.-+|+-+++. ++.+ ...|......--+-||.....+. +
T Consensus 233 Aie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~-~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qY 311 (677)
T KOG1915|consen 233 AIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDH-IPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQY 311 (677)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHH
Confidence 7653 11 001223333333333466788888888877764 2222 34555555555556665554433 2
Q ss_pred HHHHhCCCCCCcccHHHHHHHHHccCChhhHHHHHHHHHhcCCCCChhh-HHH-----H---HHHHHhcCCHHHHHHHHH
Q 010342 233 QFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVIT-LNT-----V---INGFCKMGRIEEALKVLN 303 (512)
Q Consensus 233 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~-----l---~~~~~~~~~~~~a~~~~~ 303 (512)
+... ...+.+..+|..++..-...|+.+...++++..+..-++.+... |.. + +-.-....+.+.+.++++
T Consensus 312 E~~v-~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq 390 (677)
T KOG1915|consen 312 EKEV-SKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQ 390 (677)
T ss_pred HHHH-HhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 3333 24566777888888888888999999999988886643322211 111 1 111234578888999998
Q ss_pred HHhhCCCCCCcHHHHHHHHHHH----hhcCCHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 010342 304 DMVAGKFCAPDAVTFTTIIFGL----LNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLG 379 (512)
Q Consensus 304 ~~~~~~~~~~~~~~~~~l~~~~----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 379 (512)
...+. ++-...||..+--.| .++.+...|.+++.. .-|..|...+|...|..-.+.++++.+..+|++.++
T Consensus 391 ~~l~l--IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~---AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle 465 (677)
T KOG1915|consen 391 ACLDL--IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGN---AIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLE 465 (677)
T ss_pred HHHhh--cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHH---HhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 88763 255556666554444 467888889998877 446688888898888888899999999999999998
Q ss_pred CCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCC-CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhh
Q 010342 380 IGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPS-NIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVC 458 (512)
Q Consensus 380 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~ 458 (512)
.+ |-+-.+|......-...|+.+.|..+|.-++... .......|.+.|+--...|.++.|..+++++++. .+...+
T Consensus 466 ~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~r--t~h~kv 542 (677)
T KOG1915|consen 466 FS-PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDR--TQHVKV 542 (677)
T ss_pred cC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh--cccchH
Confidence 76 5567788888888888899999999999887532 1223446777777777889999999999998876 344556
Q ss_pred HHHHHHHHH-----hcC-----------CHHHHHHHHHHHH
Q 010342 459 YNVVIDGAC-----KLS-----------MKREAYQILREMR 483 (512)
Q Consensus 459 ~~~l~~~~~-----~~g-----------~~~~a~~~~~~m~ 483 (512)
|.....--. +.| ....|..+|++..
T Consensus 543 WisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn 583 (677)
T KOG1915|consen 543 WISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERAN 583 (677)
T ss_pred HHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHH
Confidence 655544333 233 4567888888764
No 32
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.81 E-value=3.6e-14 Score=121.73 Aligned_cols=447 Identities=11% Similarity=0.086 Sum_probs=338.8
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHHHhhhcCCCCcchHhHHH
Q 010342 30 VSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFAN 109 (512)
Q Consensus 30 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (512)
..|-.-.+.-..++++..|.++|++.+... ..+...|...+.+-.+...+..|..++.+.+..+|... ..+--
T Consensus 74 ~~WikYaqwEesq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVd------qlWyK 146 (677)
T KOG1915|consen 74 QVWIKYAQWEESQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVD------QLWYK 146 (677)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHH------HHHHH
Confidence 334444444455677888999999998854 45777788888888999999999999999988877652 22223
Q ss_pred HHHHHHccCChhHHHHHHHhcCCCCCCCcchhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHhccCc
Q 010342 110 LVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGG 189 (512)
Q Consensus 110 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~ 189 (512)
.+-.--..|++..|.++|++..+ ..|+..+|.+.|..-.+.+.++.|..+++...-. .|++.+|....+-=.+.|+
T Consensus 147 Y~ymEE~LgNi~gaRqiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~ 222 (677)
T KOG1915|consen 147 YIYMEEMLGNIAGARQIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGN 222 (677)
T ss_pred HHHHHHHhcccHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCc
Confidence 44455567999999999999876 4599999999999999999999999999998864 6899999999988889999
Q ss_pred hhHHHHHHHHHHhC-CC-CCchhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC--cccHHHHHHHHHccCChhhHHH
Q 010342 190 CMRAYQLLEEGIQF-GY-LPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR--TRICNIYLRALCLIKNPTELLN 265 (512)
Q Consensus 190 ~~~a~~~~~~~~~~-~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~ 265 (512)
...+..+|+.+++. |- ..+...+.+....-.++..++.|.-+|+...+. .+.+ ...|..+...--+.|+.....+
T Consensus 223 ~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~-~pk~raeeL~k~~~~fEKqfGd~~gIEd 301 (677)
T KOG1915|consen 223 VALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDH-IPKGRAEELYKKYTAFEKQFGDKEGIED 301 (677)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcccHHHHHHHHHHHHHHhcchhhhHH
Confidence 99999999988764 21 123445666666666788899999999998864 2222 3456666655556677665554
Q ss_pred HH--------HHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcH--HHHHHHHHH--------Hhh
Q 010342 266 VL--------VFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDA--VTFTTIIFG--------LLN 327 (512)
Q Consensus 266 ~~--------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~l~~~--------~~~ 327 (512)
.. +.+.+.+ +.|-.+|-..++.-...|+.+...++|+.....- +|-. ..|...|.. -..
T Consensus 302 ~Iv~KRk~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIanv--pp~~ekr~W~RYIYLWinYalyeEle 378 (677)
T KOG1915|consen 302 AIVGKRKFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIANV--PPASEKRYWRRYIYLWINYALYEELE 378 (677)
T ss_pred HHhhhhhhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccC--CchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 43 3344443 3477788888888888999999999999998754 3421 222222211 135
Q ss_pred cCCHHHHHHHHHhhcccCCCCCChhhHHHHHHH----HHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHH
Q 010342 328 VGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG----LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLD 403 (512)
Q Consensus 328 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~----~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 403 (512)
..+.+.+.++++..+. -++....||..+--. -.+..++..|.+++.... |.-|...++...|..-.+.++++
T Consensus 379 ~ed~ertr~vyq~~l~--lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efD 454 (677)
T KOG1915|consen 379 AEDVERTRQVYQACLD--LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFD 454 (677)
T ss_pred hhhHHHHHHHHHHHHh--hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHH
Confidence 7889999999988764 345556666554333 356789999999998776 56799999999999999999999
Q ss_pred HHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 010342 404 EAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSG-VTPNIVCYNVVIDGACKLSMKREAYQILREM 482 (512)
Q Consensus 404 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m 482 (512)
....++++.++.+ +.|..+|......-...|+.+.|..+|.-.++.. +......|...|.--...|.+++|..+++++
T Consensus 455 RcRkLYEkfle~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerl 533 (677)
T KOG1915|consen 455 RCRKLYEKFLEFS-PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERL 533 (677)
T ss_pred HHHHHHHHHHhcC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHH
Confidence 9999999999876 6788899999988889999999999999988753 2223456777777778899999999999999
Q ss_pred HHCCCCCChHHHHHHH
Q 010342 483 RKNGLNPDAVTWRILD 498 (512)
Q Consensus 483 ~~~~~~p~~~~~~~l~ 498 (512)
++. .+....|.++.
T Consensus 534 L~r--t~h~kvWisFA 547 (677)
T KOG1915|consen 534 LDR--TQHVKVWISFA 547 (677)
T ss_pred HHh--cccchHHHhHH
Confidence 874 34444666654
No 33
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.80 E-value=7.4e-14 Score=124.54 Aligned_cols=465 Identities=14% Similarity=0.051 Sum_probs=380.4
Q ss_pred cccccCcHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHH----HhCCCCCChhhHHHHHHHHHhcC
Q 010342 3 QLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEM----RHCGVLPNSLTYSVLVRGVLRTR 78 (512)
Q Consensus 3 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m----~~~~~~~~~~~~~~l~~~~~~~~ 78 (512)
+|++..-++.|.++++..++. ++.+...|.+-...--.+|+.+...+++++- ...|+..+...|..=...|-..|
T Consensus 415 AlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~ag 493 (913)
T KOG0495|consen 415 ALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAG 493 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcC
Confidence 466777899999999999987 6668999998888888999999998888764 45688888888888888888888
Q ss_pred ChhhHHHHHHHHHHHhhhcCCCCcchHhHHHHHHHHHccCChhHHHHHHHhcCCCCCCCcchhHHHHHHHHHhcCChhhH
Q 010342 79 DVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGA 158 (512)
Q Consensus 79 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 158 (512)
..-....+...++....++.+ ...|+..-.+.|.+.+.++-|..+|....+-.+ .+...|......--..|..++-
T Consensus 494 sv~TcQAIi~avigigvEeed---~~~tw~~da~~~~k~~~~~carAVya~alqvfp-~k~slWlra~~~ek~hgt~Esl 569 (913)
T KOG0495|consen 494 SVITCQAIIRAVIGIGVEEED---RKSTWLDDAQSCEKRPAIECARAVYAHALQVFP-CKKSLWLRAAMFEKSHGTRESL 569 (913)
T ss_pred ChhhHHHHHHHHHhhccccch---hHhHHhhhHHHHHhcchHHHHHHHHHHHHhhcc-chhHHHHHHHHHHHhcCcHHHH
Confidence 888888877777655443322 245777888999999999999999988776544 4556777777777778999999
Q ss_pred HHHHHHHHHcCCCCCcchHHHHHHHHhccCchhHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHhC
Q 010342 159 SRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSK 238 (512)
Q Consensus 159 ~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 238 (512)
..+|++....- +-....|......+...|+...|..++..+.+.. +.+...|...+..-....+++.|..+|.+...
T Consensus 570 ~Allqkav~~~-pkae~lwlM~ake~w~agdv~~ar~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar~- 646 (913)
T KOG0495|consen 570 EALLQKAVEQC-PKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKARS- 646 (913)
T ss_pred HHHHHHHHHhC-CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhc-
Confidence 99999998863 3355677777778888999999999999998865 45788999999999999999999999999864
Q ss_pred CCCCCcccHHHHHHHHHccCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcHHHH
Q 010342 239 KDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTF 318 (512)
Q Consensus 239 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 318 (512)
..+...+|...+...-..++.++|.+++++.++.-+. =...|..+.+.+.+.++++.|...|..-.+. ++..+-.|
T Consensus 647 -~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~-f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~--cP~~ipLW 722 (913)
T KOG0495|consen 647 -ISGTERVWMKSANLERYLDNVEEALRLLEEALKSFPD-FHKLWLMLGQIEEQMENIEMAREAYLQGTKK--CPNSIPLW 722 (913)
T ss_pred -cCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCc-hHHHHHHHhHHHHHHHHHHHHHHHHHhcccc--CCCCchHH
Confidence 5566778888888888899999999999998877432 3457788888999999999999999876654 36677788
Q ss_pred HHHHHHHhhcCCHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHh
Q 010342 319 TTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCE 398 (512)
Q Consensus 319 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 398 (512)
..+...--+.|..-.|..++++..... +-+...|...|+.-.+.|+.+.|..++.+.++. ++.+...|..-|....+
T Consensus 723 llLakleEk~~~~~rAR~ildrarlkN--Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~le~~ 799 (913)
T KOG0495|consen 723 LLLAKLEEKDGQLVRARSILDRARLKN--PKNALLWLESIRMELRAGNKEQAELLMAKALQE-CPSSGLLWAEAIWLEPR 799 (913)
T ss_pred HHHHHHHHHhcchhhHHHHHHHHHhcC--CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHHHhccC
Confidence 888888888999999999998865433 667888999999999999999999999888875 46677788888888877
Q ss_pred cCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 010342 399 SNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQI 478 (512)
Q Consensus 399 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~ 478 (512)
.++-..+...+++. ..|..+...+...+....++++|.+.|.+.++.+ +.+..+|..+...+.+.|.-+.-.++
T Consensus 800 ~~rkTks~DALkkc-----e~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d-~d~GD~wa~fykfel~hG~eed~kev 873 (913)
T KOG0495|consen 800 PQRKTKSIDALKKC-----EHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKD-PDNGDAWAWFYKFELRHGTEEDQKEV 873 (913)
T ss_pred cccchHHHHHHHhc-----cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccC-CccchHHHHHHHHHHHhCCHHHHHHH
Confidence 77766666666654 5677888889999999999999999999999876 33667899999999999998888999
Q ss_pred HHHHHHCCCCCC
Q 010342 479 LREMRKNGLNPD 490 (512)
Q Consensus 479 ~~~m~~~~~~p~ 490 (512)
+.+... ..|.
T Consensus 874 ~~~c~~--~EP~ 883 (913)
T KOG0495|consen 874 LKKCET--AEPT 883 (913)
T ss_pred HHHHhc--cCCC
Confidence 998876 3454
No 34
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.78 E-value=2.1e-14 Score=132.76 Aligned_cols=434 Identities=13% Similarity=0.090 Sum_probs=302.9
Q ss_pred ccCcHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhhHHH
Q 010342 6 GLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANV 85 (512)
Q Consensus 6 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 85 (512)
-.|++++|.+++.++++..+. +...|.+|...|-..|+.+++...+-..-... +.|...|..+.....+.|.+++|.-
T Consensus 151 arg~~eeA~~i~~EvIkqdp~-~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~qA~~ 228 (895)
T KOG2076|consen 151 ARGDLEEAEEILMEVIKQDPR-NPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNINQARY 228 (895)
T ss_pred HhCCHHHHHHHHHHHHHhCcc-chhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHHHHHH
Confidence 349999999999999999655 78899999999999999999988776555432 3477889999999999999999999
Q ss_pred HHHHHHHHhhhcCCCCcchHhHHHHHHHHHccCChhHHHHHHHhcCCCCCCCcchhHHH----HHHHHHhcCChhhHHHH
Q 010342 86 LMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGH----MIDSLCRSGRNHGASRV 161 (512)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~----l~~~~~~~~~~~~a~~~ 161 (512)
.+.++++..|.. ...+-.-+..|-+.|+...|..-|.++....++.+..-+.. .++.+...++-+.|.+.
T Consensus 229 cy~rAI~~~p~n------~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~ 302 (895)
T KOG2076|consen 229 CYSRAIQANPSN------WELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKA 302 (895)
T ss_pred HHHHHHhcCCcc------hHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 999988754433 22233356778899999999999999888766333332222 35566677777888888
Q ss_pred HHHHHHc-CCCCCcchHHHHHHHHhccCchhHHHHHHHHHHhCC---------------------------CCCchhhHH
Q 010342 162 VYVMRKR-GLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFG---------------------------YLPSEHTYK 213 (512)
Q Consensus 162 ~~~~~~~-g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---------------------------~~~~~~~~~ 213 (512)
++..... +-..+...++.++..+.+...++.+......+.... +.++... .
T Consensus 303 le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v-~ 381 (895)
T KOG2076|consen 303 LEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV-I 381 (895)
T ss_pred HHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh-H
Confidence 8876652 233466788889999999999999988888776621 1122222 1
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHhCCCC--CCcccHHHHHHHHHccCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHh
Q 010342 214 VLVEGLCGESDLEKARKVLQFMLSKKDV--DRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCK 291 (512)
Q Consensus 214 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 291 (512)
-++-+..+....+....+...+...... .....+..+..++...|++.+|+.++..+......-+...|-.+..+|..
T Consensus 382 rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~ 461 (895)
T KOG2076|consen 382 RLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYME 461 (895)
T ss_pred hHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHH
Confidence 2233344555555555566666655533 34568888899999999999999999999887666678889999999999
Q ss_pred cCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhhccc-------CCCCCChhhHHHHHHHHHcc
Q 010342 292 MGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQ-------RGYSPGIVTYNAVLRGLFRL 364 (512)
Q Consensus 292 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~ 364 (512)
.|.++.|.+.|+...... +.+......|...+.+.|+.++|.+.+..+... .+..|+..........+.+.
T Consensus 462 l~e~e~A~e~y~kvl~~~--p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~ 539 (895)
T KOG2076|consen 462 LGEYEEAIEFYEKVLILA--PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQV 539 (895)
T ss_pred HhhHHHHHHHHHHHHhcC--CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHh
Confidence 999999999999998776 566677778888899999999999998774311 12233333333334444555
Q ss_pred CCHHHHHHHHHHHHhC---------------------------------------------------------------C
Q 010342 365 RRVEEAKEVFNCMLGI---------------------------------------------------------------G 381 (512)
Q Consensus 365 ~~~~~a~~~~~~~~~~---------------------------------------------------------------~ 381 (512)
|+.++-..+-..|... |
T Consensus 540 gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~ 619 (895)
T KOG2076|consen 540 GKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRG 619 (895)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhcc
Confidence 5544432222222100 0
Q ss_pred CCCCh--HhHHHHHHHHHhcCCHHHHHHHHHHhhcCCC--CCCH---HhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 010342 382 VVADS--TTYAIVIDGLCESNQLDEAKRFWDDIVWPSN--IHDN---YVYAAMIKGLCRSGKIHEAVHFLYELVDS 450 (512)
Q Consensus 382 ~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 450 (512)
+..+. ..+.-++.++.+.+++++|..+...+..... .++. ..-...+.+.+..+++..|...++.|+..
T Consensus 620 Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~ 695 (895)
T KOG2076|consen 620 LSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQ 695 (895)
T ss_pred CcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 00011 2345567788899999999998888764332 1111 23345556677788888888888777654
No 35
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.74 E-value=4.9e-15 Score=126.34 Aligned_cols=441 Identities=13% Similarity=0.077 Sum_probs=217.8
Q ss_pred cccccCcHHHHHHHHHHHHhCCCCCChH------hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHh
Q 010342 3 QLCGLSRVGEAHKLFFDMKSRGHVPNVV------SYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLR 76 (512)
Q Consensus 3 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~------~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~ 76 (512)
.+++..++.+|++.++-.+.. .|+.. ..+.+...+.+.|+++.|+..|+...+. .|+..+-..|+-++..
T Consensus 246 i~~kkr~fskaikfyrmaldq--vpsink~~rikil~nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~ 321 (840)
T KOG2003|consen 246 IHFKKREFSKAIKFYRMALDQ--VPSINKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFA 321 (840)
T ss_pred eeeehhhHHHHHHHHHHHHhh--ccccchhhHHHHHhhcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhhee
Confidence 467788899999999887776 33332 3455556678899999999999998776 5888776667777777
Q ss_pred cCChhhHHHHHHHHHHHhhhcC---CCCcchHhHHHHHHHHHccCC-----------hhHHHHHHHhcCCCCCCCcchhH
Q 010342 77 TRDVERANVLMFKLWERMKEEE---DLSVNNAAFANLVDSLCREGY-----------VNEVFRIAEDMPQGKSVNEEFAC 142 (512)
Q Consensus 77 ~~~~~~a~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~-----------~~~a~~~~~~~~~~~~~~~~~~~ 142 (512)
.|+.++-.+.+.+++..-.... -+.+....-..|+.--.+... -++++-.--++...-+.|+-..
T Consensus 322 i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~- 400 (840)
T KOG2003|consen 322 IGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAA- 400 (840)
T ss_pred cCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhc-
Confidence 8888888877777765211100 011111111122222222211 1111111111111111111100
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHhccCchhHHHHHHHHHHhCCCCCchhhHH--HHHHHHh
Q 010342 143 GHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYK--VLVEGLC 220 (512)
Q Consensus 143 ~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~ 220 (512)
| .+-.++.++.-....+..+.. ..-.--+.++|+++.|.+++.-..+..-+.-...-+ .++....
T Consensus 401 ----------g-~dwcle~lk~s~~~~la~dle--i~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flq 467 (840)
T KOG2003|consen 401 ----------G-CDWCLESLKASQHAELAIDLE--INKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQ 467 (840)
T ss_pred ----------c-cHHHHHHHHHhhhhhhhhhhh--hhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHh
Confidence 0 000011111000000000000 001122445566666665555544332111111111 1222222
Q ss_pred ccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 010342 221 GESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300 (512)
Q Consensus 221 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 300 (512)
.-.++..|..+-+.....+ .-+......-.......|++++|...+++.+...-.-....|| +.-.+...|+.++|++
T Consensus 468 ggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald 545 (840)
T KOG2003|consen 468 GGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALD 545 (840)
T ss_pred cccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHH
Confidence 2334555555544443221 1111111111222334566666666666555432211111222 1223455566666666
Q ss_pred HHHHHhhCCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 010342 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGI 380 (512)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 380 (512)
.|-++...- ..+......+...|-...+...|++++.+. ..-++.|+...+.|...|-+.|+-..|.+.+-+--+.
T Consensus 546 ~f~klh~il--~nn~evl~qianiye~led~aqaie~~~q~--~slip~dp~ilskl~dlydqegdksqafq~~ydsyry 621 (840)
T KOG2003|consen 546 CFLKLHAIL--LNNAEVLVQIANIYELLEDPAQAIELLMQA--NSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY 621 (840)
T ss_pred HHHHHHHHH--HhhHHHHHHHHHHHHHhhCHHHHHHHHHHh--cccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc
Confidence 666554322 345555566666666666666666666442 2223445666666666666666666666655443332
Q ss_pred CCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHH-hcCCHHHHHHHHHHHHHCCCCCChhhH
Q 010342 381 GVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLC-RSGKIHEAVHFLYELVDSGVTPNIVCY 459 (512)
Q Consensus 381 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~a~~~~~~~~~~~~~p~~~~~ 459 (512)
++.+..+...|...|....-+++++.+|++..- +.|+..-|..++..|. +.|++.+|.++++...+. ++-|..++
T Consensus 622 -fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldcl 697 (840)
T KOG2003|consen 622 -FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCL 697 (840)
T ss_pred -cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHH
Confidence 355666666666666666666667766666532 4566666666654443 456677777666666544 34466666
Q ss_pred HHHHHHHHhcCC
Q 010342 460 NVVIDGACKLSM 471 (512)
Q Consensus 460 ~~l~~~~~~~g~ 471 (512)
..|++.+...|.
T Consensus 698 kflvri~~dlgl 709 (840)
T KOG2003|consen 698 KFLVRIAGDLGL 709 (840)
T ss_pred HHHHHHhccccc
Confidence 666666665553
No 36
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.72 E-value=1.6e-13 Score=127.06 Aligned_cols=352 Identities=13% Similarity=0.119 Sum_probs=241.0
Q ss_pred HHhcCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHhccCchhHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCCHHHH
Q 010342 149 LCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKA 228 (512)
Q Consensus 149 ~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 228 (512)
....|+.++|.+++.+.++..+. +...|-+|...|-..|+.+++...+-.+.... +.|...|..+.......|+++.|
T Consensus 149 lfarg~~eeA~~i~~EvIkqdp~-~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~qA 226 (895)
T KOG2076|consen 149 LFARGDLEEAEEILMEVIKQDPR-NPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNINQA 226 (895)
T ss_pred HHHhCCHHHHHHHHHHHHHhCcc-chhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHHHH
Confidence 33448888888888887776433 66778888888888888888877765554433 44667777777777788888888
Q ss_pred HHHHHHHHhCCCCCCcccHHHHHHHHHccCChhhHHHHHHHHHhcCCCCChhhHH----HHHHHHHhcCCHHHHHHHHHH
Q 010342 229 RKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLN----TVINGFCKMGRIEEALKVLND 304 (512)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~~~~~~a~~~~~~ 304 (512)
.-.|.+..+. .+++...+..-...|-+.|+...|...+.++....++.|..-+. .+++.+...++-+.|++.++.
T Consensus 227 ~~cy~rAI~~-~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~ 305 (895)
T KOG2076|consen 227 RYCYSRAIQA-NPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEG 305 (895)
T ss_pred HHHHHHHHhc-CCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 8888887754 34445555556677777888888888888877765533333222 334556666777888888877
Q ss_pred HhhCCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhhcc--------------------------cCCCCCChhhHHHHH
Q 010342 305 MVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMP--------------------------QRGYSPGIVTYNAVL 358 (512)
Q Consensus 305 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--------------------------~~~~~~~~~~~~~l~ 358 (512)
.........+...++.++..+.+...++.|...+.+... ..+..++...+ -++
T Consensus 306 ~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~-rl~ 384 (895)
T KOG2076|consen 306 ALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVI-RLM 384 (895)
T ss_pred HHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhH-hHh
Confidence 776443345566677777777877778877776655332 01112222221 223
Q ss_pred HHHHccCCHHHHHHHHHHHHhCCC--CCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCC
Q 010342 359 RGLFRLRRVEEAKEVFNCMLGIGV--VADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGK 436 (512)
Q Consensus 359 ~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 436 (512)
-++.+....+....+..-+....+ ..+...|.-+.++|...|++.+|..++..+.......+...|-.+.++|...|.
T Consensus 385 icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e 464 (895)
T KOG2076|consen 385 ICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGE 464 (895)
T ss_pred hhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhh
Confidence 344555555666666666666553 334567888999999999999999999999876656677899999999999999
Q ss_pred HHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH--------HCCCCCChHHHHHHHHhhccCC
Q 010342 437 IHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMR--------KNGLNPDAVTWRILDKLHGNRG 505 (512)
Q Consensus 437 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~--------~~~~~p~~~~~~~l~~~~~~~g 505 (512)
+++|.+.+.+.+... +.+...-..|...+.+.|+.++|.+.+..+. ..+..|+..........+...|
T Consensus 465 ~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~g 540 (895)
T KOG2076|consen 465 YEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVG 540 (895)
T ss_pred HHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhh
Confidence 999999999998864 2355666778888899999999999998853 2234444444444445554444
No 37
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.71 E-value=4.3e-17 Score=141.97 Aligned_cols=261 Identities=17% Similarity=0.142 Sum_probs=94.5
Q ss_pred HHHHHhccCCHHHHHHHHHHHHhCC-CCCCcccHHHHHHHHHccCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcC
Q 010342 215 LVEGLCGESDLEKARKVLQFMLSKK-DVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMG 293 (512)
Q Consensus 215 l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 293 (512)
+...+...|++++|.++++...... .+.+...+..+.......++++.|...++.+...+.. ++..+..++.. ...+
T Consensus 14 ~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~ 91 (280)
T PF13429_consen 14 LARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-cccc
Confidence 3455555566666666664433222 2333444444555555556666666666666554433 44555566655 5677
Q ss_pred CHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHccCCHHHHHHH
Q 010342 294 RIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEV 373 (512)
Q Consensus 294 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 373 (512)
++++|.++++..-+. .++...+..++..+...++++++.+++.+.......+++...|..+...+.+.|+.++|...
T Consensus 92 ~~~~A~~~~~~~~~~---~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 92 DPEEALKLAEKAYER---DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred ccccccccccccccc---ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 777777777665543 34555566677777777777777777777554444455666777777777778888888888
Q ss_pred HHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 010342 374 FNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVT 453 (512)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 453 (512)
+++..+.. |.|......++..+...|+.+++.++++...+.. +.|...+..+..+|...|+.++|...+++..+.. +
T Consensus 169 ~~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p 245 (280)
T PF13429_consen 169 YRKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-P 245 (280)
T ss_dssp HHHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-T
T ss_pred HHHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-c
Confidence 88877753 4456677777777777787777777777666543 4455567777778888888888888888777753 3
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010342 454 PNIVCYNVVIDGACKLSMKREAYQILREMR 483 (512)
Q Consensus 454 p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 483 (512)
.|+.....+..++...|+.++|.++.++..
T Consensus 246 ~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 246 DDPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp T-HHHHHHHHHHHT----------------
T ss_pred cccccccccccccccccccccccccccccc
Confidence 367777777788888888888877776654
No 38
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.70 E-value=2.6e-13 Score=123.67 Aligned_cols=285 Identities=12% Similarity=0.083 Sum_probs=183.7
Q ss_pred cCchhHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCcccHH--HHHHHHHccCChhhHH
Q 010342 187 HGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICN--IYLRALCLIKNPTELL 264 (512)
Q Consensus 187 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~a~ 264 (512)
.|+++.|.+.+....+..-.| ...|..........|+++.|...+.++.+. .|+..... .....+...|+++.|.
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p-~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al 173 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQP-VVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAAR 173 (398)
T ss_pred CCCHHHHHHHHHHHHhcccch-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHH
Confidence 466666665555443321111 122222333335666666666666666532 22222111 2245556666666666
Q ss_pred HHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcH------HHHHHHHHHHhhcCCHHHHHHHH
Q 010342 265 NVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDA------VTFTTIIFGLLNVGRIQEALNLL 338 (512)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~a~~~~ 338 (512)
..++.+.+..+. ++.....+...|.+.|++++|.+++..+.+.....+.. .+|..++.......+.+...+.+
T Consensus 174 ~~l~~~~~~~P~-~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w 252 (398)
T PRK10747 174 HGVDKLLEVAPR-HPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWW 252 (398)
T ss_pred HHHHHHHhcCCC-CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 666666666533 56677778888888888888888888888766432221 12233333334444555555655
Q ss_pred HhhcccCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCC
Q 010342 339 YQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNI 418 (512)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 418 (512)
.+.-. ..+.++.....+...+...|+.++|..++++..+. +++.... ++.+....++.+++.+..+...+.. +
T Consensus 253 ~~lp~--~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~-P 325 (398)
T PRK10747 253 KNQSR--KTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQH-G 325 (398)
T ss_pred HhCCH--HHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhC-C
Confidence 55322 22456777778888888899999999988888773 4555322 2333345588888888888887664 5
Q ss_pred CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 010342 419 HDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRK 484 (512)
Q Consensus 419 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 484 (512)
.|...+..+...|.+.+++++|.+.|++..+. .|+...+..+...+.+.|+.++|.+++++-..
T Consensus 326 ~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 326 DTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 66677888888899999999999999888875 67888888888888899999999888887653
No 39
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.69 E-value=1.7e-13 Score=125.62 Aligned_cols=288 Identities=13% Similarity=0.063 Sum_probs=185.0
Q ss_pred ccCchhHHHHHHHHHHhCCCCCc-hhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCcc--cHHHHHHHHHccCChhh
Q 010342 186 KHGGCMRAYQLLEEGIQFGYLPS-EHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTR--ICNIYLRALCLIKNPTE 262 (512)
Q Consensus 186 ~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~ 262 (512)
..|+++.|.+.+.+..+. .|+ ...+..........|+.+.|.+.+....+.. |+.. .-......+...|+++.
T Consensus 96 ~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--p~~~l~~~~~~a~l~l~~~~~~~ 171 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA--GNDNILVEIARTRILLAQNELHA 171 (409)
T ss_pred hCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CcCchHHHHHHHHHHHHCCCHHH
Confidence 466777777777665543 233 2233344555666677777777777765422 2222 22334666666777777
Q ss_pred HHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHH----HHHHHHhhcCCHHHHHHHH
Q 010342 263 LLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFT----TIIFGLLNVGRIQEALNLL 338 (512)
Q Consensus 263 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~~~~~~a~~~~ 338 (512)
|...++.+.+..+. +...+..+...+.+.|+++.|.+.+..+.+.+. .+...+. .........+..+++.+.+
T Consensus 172 Al~~l~~l~~~~P~-~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~--~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L 248 (409)
T TIGR00540 172 ARHGVDKLLEMAPR-HKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGL--FDDEEFADLEQKAEIGLLDEAMADEGIDGL 248 (409)
T ss_pred HHHHHHHHHHhCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHHHHHHHHHhcCHHHH
Confidence 77777777766533 556777888888888888888888888887653 2222221 1111112222222223333
Q ss_pred HhhcccC--CCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHh---HHHHHHHHHhcCCHHHHHHHHHHhh
Q 010342 339 YQVMPQR--GYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTT---YAIVIDGLCESNQLDEAKRFWDDIV 413 (512)
Q Consensus 339 ~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~a~~~~~~~~ 413 (512)
.+..... ..+.++..+..+...+...|+.++|.+++++..+.. |+... ...........++.+.+.+.++...
T Consensus 249 ~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~l 326 (409)
T TIGR00540 249 LNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQA 326 (409)
T ss_pred HHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCChHHHHHHHHHHH
Confidence 3332221 112367788888888999999999999999988853 33321 1111122234577888888888877
Q ss_pred cCCCCCCH--HhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010342 414 WPSNIHDN--YVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMR 483 (512)
Q Consensus 414 ~~~~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 483 (512)
+.. +.|. ....++.+.+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++..
T Consensus 327 k~~-p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 327 KNV-DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred HhC-CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 653 4455 66778899999999999999999954444447888888899999999999999999998864
No 40
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.69 E-value=2.2e-16 Score=137.54 Aligned_cols=225 Identities=14% Similarity=0.150 Sum_probs=83.9
Q ss_pred HHHHhccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCH
Q 010342 216 VEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRI 295 (512)
Q Consensus 216 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 295 (512)
.......++++.|.+.++++...+.. ++..+..++.. ...+++++|..++....+. .+++..+...+..+.+.+++
T Consensus 51 a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~ 126 (280)
T PF13429_consen 51 ADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDY 126 (280)
T ss_dssp -----------------------------------------------------------------------H-HHHTT-H
T ss_pred cccccccccccccccccccccccccc-ccccccccccc-ccccccccccccccccccc--ccccchhhHHHHHHHHHhHH
Confidence 33333444444444444444432111 22233333333 3444444444444433332 13444555566666666777
Q ss_pred HHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHccCCHHHHHHHHH
Q 010342 296 EEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFN 375 (512)
Q Consensus 296 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 375 (512)
+++..+++.+......+.+...|..+...+.+.|+.++|++.+++.++.. +.|......++..+...|+.+++..+++
T Consensus 127 ~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~--P~~~~~~~~l~~~li~~~~~~~~~~~l~ 204 (280)
T PF13429_consen 127 DEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELD--PDDPDARNALAWLLIDMGDYDEAREALK 204 (280)
T ss_dssp HHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHCCChHHHHHHHH
Confidence 77777766665443334555666666666667777777777776665443 3345556666666666677766666666
Q ss_pred HHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010342 376 CMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELV 448 (512)
Q Consensus 376 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 448 (512)
...+.. +.++..+..+..+|...|+.++|...+++..+.. +.|......+..++...|+.++|.++.++..
T Consensus 205 ~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 205 RLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PDDPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp HHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHT----------------
T ss_pred HHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-ccccccccccccccccccccccccccccccc
Confidence 665543 4455556666667777777777777777766543 4566666667777777777777776665543
No 41
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.68 E-value=1.2e-13 Score=126.57 Aligned_cols=290 Identities=8% Similarity=-0.016 Sum_probs=149.0
Q ss_pred ccCChhHHHHHHHhcCCCCCCCcchhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCcc--hHHHHHHHHhccCchhHH
Q 010342 116 REGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLV--SYNSIVHGLCKHGGCMRA 193 (512)
Q Consensus 116 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~--~~~~l~~~~~~~~~~~~a 193 (512)
..|+++.|.+.+....+..+.| ...+-....+....|+++.|.+.+....+.. |+.. ........+...|+++.|
T Consensus 96 ~~g~~~~A~~~l~~~~~~~~~~-~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--p~~~l~~~~~~a~l~l~~~~~~~A 172 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHAAEP-VLNLIKAAEAAQQRGDEARANQHLEEAAELA--GNDNILVEIARTRILLAQNELHAA 172 (409)
T ss_pred hCCCHHHHHHHHHHHhhcCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CcCchHHHHHHHHHHHHCCCHHHH
Confidence 3455666665555544432211 1122223344445555555555555554432 2221 222234445555555555
Q ss_pred HHHHHHHHhCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChhhHHHHHHHHHhc
Q 010342 194 YQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQT 273 (512)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 273 (512)
.+.++.+.+.. +-++..+..+...+...|+++.+.+.+..+.+.+
T Consensus 173 l~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~---------------------------------- 217 (409)
T TIGR00540 173 RHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAG---------------------------------- 217 (409)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcC----------------------------------
Confidence 55555555543 3344455555555555555555555555555433
Q ss_pred CCCCChhhHH-HHHHH---HHhcCCHHHHHHHHHHHhhCCC--CCCcHHHHHHHHHHHhhcCCHHHHHHHHHhhcccCCC
Q 010342 274 QCQPDVITLN-TVING---FCKMGRIEEALKVLNDMVAGKF--CAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGY 347 (512)
Q Consensus 274 ~~~~~~~~~~-~l~~~---~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 347 (512)
.. +...+. .-..+ ....+..+...+.+..+..... .+.+...+..+...+...|+.++|.+.+.+.++..
T Consensus 218 -~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~-- 293 (409)
T TIGR00540 218 -LF-DDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL-- 293 (409)
T ss_pred -CC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--
Confidence 22 111111 00011 1111222222223322222110 02366666677777777777777777777765433
Q ss_pred CCChhh---HHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCh--HhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHH
Q 010342 348 SPGIVT---YNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADS--TTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNY 422 (512)
Q Consensus 348 ~~~~~~---~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 422 (512)
|+... ...........++.+.+.+.++...+.. +.|+ ....++...+.+.|++++|.+.|+........|+..
T Consensus 294 -pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~-p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~ 371 (409)
T TIGR00540 294 -GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNV-DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAN 371 (409)
T ss_pred -CCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHH
Confidence 22221 1111122233466677777777766642 4444 556677777778888888888887533333467777
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 010342 423 VYAAMIKGLCRSGKIHEAVHFLYELVD 449 (512)
Q Consensus 423 ~~~~l~~~~~~~g~~~~a~~~~~~~~~ 449 (512)
.+..+...+.+.|+.++|.+++++...
T Consensus 372 ~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 372 DLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 777777888888888888888777543
No 42
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.67 E-value=4.7e-13 Score=121.98 Aligned_cols=252 Identities=13% Similarity=0.068 Sum_probs=160.6
Q ss_pred hccCchhHHHHHHHHHHhCCCCCchhhHH--HHHHHHhccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChhh
Q 010342 185 CKHGGCMRAYQLLEEGIQFGYLPSEHTYK--VLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTE 262 (512)
Q Consensus 185 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 262 (512)
.+.|+++.|.+.+.++.+. .|+..... .....+...|+++.|...++.+.+. .+.++.....+...|.+.|++++
T Consensus 129 ~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~-~P~~~~al~ll~~~~~~~gdw~~ 205 (398)
T PRK10747 129 QQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARHGVDKLLEV-APRHPEVLRLAEQAYIRTGAWSS 205 (398)
T ss_pred HHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHHHhHHH
Confidence 4445555555555554432 22222111 2233444455555555555555432 23334444445555555555555
Q ss_pred HHHHHHHHHhcCCCCCh-------hhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCCHHHHH
Q 010342 263 LLNVLVFMLQTQCQPDV-------ITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEAL 335 (512)
Q Consensus 263 a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 335 (512)
+..++..+.+....++. ..|..++.......+.+...++++.+.+.. +.++.....+...+...|+.++|.
T Consensus 206 a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~--~~~~~~~~~~A~~l~~~g~~~~A~ 283 (398)
T PRK10747 206 LLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKT--RHQVALQVAMAEHLIECDDHDTAQ 283 (398)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHH--hCCHHHHHHHHHHHHHCCCHHHHH
Confidence 55555555544332111 123333443444456667777777765543 567778888889999999999999
Q ss_pred HHHHhhcccCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcC
Q 010342 336 NLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWP 415 (512)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 415 (512)
+.+.+.++ . +|++... ++.+....++.+++.+..+...+.. +.|+..+..+...+.+.+++++|.+.|+...+.
T Consensus 284 ~~L~~~l~-~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~-P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~ 357 (398)
T PRK10747 284 QIILDGLK-R--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQH-GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ 357 (398)
T ss_pred HHHHHHHh-c--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 99988664 2 5555322 3334445688999999999888764 566777888899999999999999999999764
Q ss_pred CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 010342 416 SNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVD 449 (512)
Q Consensus 416 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 449 (512)
.|+...+..+...+.+.|+.++|.+++++...
T Consensus 358 --~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 358 --RPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred --CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 68888888899999999999999999987754
No 43
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.66 E-value=3.5e-13 Score=110.10 Aligned_cols=235 Identities=18% Similarity=0.131 Sum_probs=145.3
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHHHhhhcCCCCcc--hHhHH
Q 010342 31 SYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVN--NAAFA 108 (512)
Q Consensus 31 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~~~~~ 108 (512)
.|-.-+..+ -++++++|.++|-+|.+.. +-+..+...|.+.|.+.|..++|+.+++.+.++ ++.... .....
T Consensus 38 ~Yv~GlNfL-Ls~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s----pdlT~~qr~lAl~ 111 (389)
T COG2956 38 DYVKGLNFL-LSNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES----PDLTFEQRLLALQ 111 (389)
T ss_pred HHHhHHHHH-hhcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC----CCCchHHHHHHHH
Confidence 344444433 3568899999999998742 334556677888899999999999988877642 222222 22445
Q ss_pred HHHHHHHccCChhHHHHHHHhcCCCCCCCcchhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCcc----hHHHHHHHH
Q 010342 109 NLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLV----SYNSIVHGL 184 (512)
Q Consensus 109 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~----~~~~l~~~~ 184 (512)
.|.+-|...|-+|.|..+|..+.+.+. .-..+...|+..|-...+|++|.++-+++.+.|..+... .|.-+...+
T Consensus 112 qL~~Dym~aGl~DRAE~~f~~L~de~e-fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~ 190 (389)
T COG2956 112 QLGRDYMAAGLLDRAEDIFNQLVDEGE-FAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQA 190 (389)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHhcchh-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHH
Confidence 566777778888888888887776443 334456667777777777877777777777665443322 345555555
Q ss_pred hccCchhHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChhhHH
Q 010342 185 CKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELL 264 (512)
Q Consensus 185 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 264 (512)
....+.+.|..++.+..+.+ +..+..-..+.+.....|+++.|.+.++.+.+.+..--+.+...+..+|...|++++..
T Consensus 191 ~~~~~~d~A~~~l~kAlqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~ 269 (389)
T COG2956 191 LASSDVDRARELLKKALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGL 269 (389)
T ss_pred hhhhhHHHHHHHHHHHHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 55666777777777666544 33444444555666666777777777766665543333334444444444444444444
Q ss_pred HHHHHHHhc
Q 010342 265 NVLVFMLQT 273 (512)
Q Consensus 265 ~~~~~~~~~ 273 (512)
..+..+.+.
T Consensus 270 ~fL~~~~~~ 278 (389)
T COG2956 270 NFLRRAMET 278 (389)
T ss_pred HHHHHHHHc
Confidence 444444433
No 44
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.66 E-value=3.5e-11 Score=103.51 Aligned_cols=311 Identities=13% Similarity=0.064 Sum_probs=230.0
Q ss_pred HHHHHhccCchhHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC---cccHHHHHHHHHc
Q 010342 180 IVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR---TRICNIYLRALCL 256 (512)
Q Consensus 180 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~ 256 (512)
+..++....+.+++.+-.+.....|++.+...-+....+.....|+++|+.+|+.+... .+-. ..+|..++-.-
T Consensus 233 ~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~kn-DPYRl~dmdlySN~LYv~-- 309 (559)
T KOG1155|consen 233 LKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKN-DPYRLDDMDLYSNVLYVK-- 309 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhc-CCCcchhHHHHhHHHHHH--
Confidence 34455566678888888888888887777666666666777888999999999999865 3322 33444443322
Q ss_pred cCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCCHHHHHH
Q 010342 257 IKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALN 336 (512)
Q Consensus 257 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 336 (512)
..+. .+..+..-.-.--+--+.|+-.+.+-|.-.++.++|...|++..+.+ +.....|+.+..-|....+...|.+
T Consensus 310 ~~~s--kLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN--p~~~~aWTLmGHEyvEmKNt~AAi~ 385 (559)
T KOG1155|consen 310 NDKS--KLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN--PKYLSAWTLMGHEYVEMKNTHAAIE 385 (559)
T ss_pred hhhH--HHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC--cchhHHHHHhhHHHHHhcccHHHHH
Confidence 2111 11222111111112234567778888888899999999999999877 6778889999999999999999999
Q ss_pred HHHhhcccCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCC
Q 010342 337 LLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPS 416 (512)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 416 (512)
-++..+.-. +.|-..|-.|.++|.-.+...=|+-.|++..+.. |.|...|.+|..+|.+.++.++|++.|.+....+
T Consensus 386 sYRrAvdi~--p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~ 462 (559)
T KOG1155|consen 386 SYRRAVDIN--PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG 462 (559)
T ss_pred HHHHHHhcC--chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc
Confidence 998876544 6678889999999999999999999999998864 6688899999999999999999999999998776
Q ss_pred CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC----C-CCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 010342 417 NIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDS----G-VTP-NIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPD 490 (512)
Q Consensus 417 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~-~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~ 490 (512)
..+...+..|...|-+.++.++|...|.+.++. | +.| .......|..-+.+.+++++|..+...... | .+.
T Consensus 463 -dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~-~-~~e 539 (559)
T KOG1155|consen 463 -DTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLK-G-ETE 539 (559)
T ss_pred -ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhc-C-Cch
Confidence 446678999999999999999999999887752 3 222 222333466777889999999887777665 2 566
Q ss_pred hHHHHHHHHhhcc
Q 010342 491 AVTWRILDKLHGN 503 (512)
Q Consensus 491 ~~~~~~l~~~~~~ 503 (512)
..--+.|++-..+
T Consensus 540 ~eeak~LlReir~ 552 (559)
T KOG1155|consen 540 CEEAKALLREIRK 552 (559)
T ss_pred HHHHHHHHHHHHH
Confidence 6666666655443
No 45
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.66 E-value=1.1e-12 Score=113.19 Aligned_cols=405 Identities=10% Similarity=0.043 Sum_probs=222.8
Q ss_pred cccccCcHHHHHHHHHHHHhCCCCCC-hHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCh-hhHHHHHHHHHhcCCh
Q 010342 3 QLCGLSRVGEAHKLFFDMKSRGHVPN-VVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNS-LTYSVLVRGVLRTRDV 80 (512)
Q Consensus 3 ~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~-~~~~~l~~~~~~~~~~ 80 (512)
-|.++|++++|++.+...++. .|+ +.-|.....+|...|+++++.+--.+..+. .|+- ..+..-.+++-..|+.
T Consensus 124 ~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl--~P~Y~KAl~RRA~A~E~lg~~ 199 (606)
T KOG0547|consen 124 KFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALEL--NPDYVKALLRRASAHEQLGKF 199 (606)
T ss_pred hhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhc--CcHHHHHHHHHHHHHHhhccH
Confidence 467888899999999888886 666 677888888888888888888877777764 3543 2455555667777777
Q ss_pred hhHHHHHHHHHHHhhhcCCCCcchHhHHHHHHHHHccCChhHHHHHH--------Hh-cCCCC--CCCcchhHHHHHHHH
Q 010342 81 ERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIA--------ED-MPQGK--SVNEEFACGHMIDSL 149 (512)
Q Consensus 81 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~--------~~-~~~~~--~~~~~~~~~~l~~~~ 149 (512)
+++..-..- ..+...+....-.--+.+++ ++ +.+.+ ..|+....++....+
T Consensus 200 ~eal~D~tv------------------~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF 261 (606)
T KOG0547|consen 200 DEALFDVTV------------------LCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSF 261 (606)
T ss_pred HHHHHhhhH------------------HHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhc
Confidence 776431110 01111111111111111111 11 22111 123332222222221
Q ss_pred HhcCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHhc-----cCchhHHHHHHHHHHhC---CCCCc---------hhhH
Q 010342 150 CRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCK-----HGGCMRAYQLLEEGIQF---GYLPS---------EHTY 212 (512)
Q Consensus 150 ~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~---~~~~~---------~~~~ 212 (512)
-.. .......+.......+..++.. ...+..+.+.+.+-... ....+ ..+.
T Consensus 262 ~~~------------~~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al 329 (606)
T KOG0547|consen 262 HAD------------PKPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEAL 329 (606)
T ss_pred ccc------------ccccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHH
Confidence 100 0000000011111111111110 11233333333321110 00011 1122
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhc
Q 010342 213 KVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKM 292 (512)
Q Consensus 213 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 292 (512)
......+.-.|+.-.|..-|+...... +.....|-.+...|...++.++....|....+.++. ++.+|..-.+.+.-.
T Consensus 330 ~~~gtF~fL~g~~~~a~~d~~~~I~l~-~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL 407 (606)
T KOG0547|consen 330 LLRGTFHFLKGDSLGAQEDFDAAIKLD-PAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLL 407 (606)
T ss_pred HHhhhhhhhcCCchhhhhhHHHHHhcC-cccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHH
Confidence 222233345677777777777776542 223333666667777777777777777777776644 566666666666667
Q ss_pred CCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHccCCHHHHHH
Q 010342 293 GRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKE 372 (512)
Q Consensus 293 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 372 (512)
+++++|..-|++..... +.+...|..+..+..+.+++++++..|++..+. ++..+..|+.....+...+++++|.+
T Consensus 408 ~q~e~A~aDF~Kai~L~--pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk--FP~~~Evy~~fAeiLtDqqqFd~A~k 483 (606)
T KOG0547|consen 408 QQYEEAIADFQKAISLD--PENAYAYIQLCCALYRQHKIAESMKTFEEAKKK--FPNCPEVYNLFAEILTDQQQFDKAVK 483 (606)
T ss_pred HHHHHHHHHHHHHhhcC--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCCchHHHHHHHHHhhHHhHHHHHH
Confidence 77777877777777655 556666666666667777777777777776433 35556677777777777778888888
Q ss_pred HHHHHHhCCCC-------CChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHH
Q 010342 373 VFNCMLGIGVV-------ADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLY 445 (512)
Q Consensus 373 ~~~~~~~~~~~-------~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 445 (512)
.|+...+.... +.+.+.-.++-.- -.+++..|..++++.++.+ +.....+..|...-.++|+.++|+++|+
T Consensus 484 ~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~D-pkce~A~~tlaq~~lQ~~~i~eAielFE 561 (606)
T KOG0547|consen 484 QYDKAIELEPREHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIELD-PKCEQAYETLAQFELQRGKIDEAIELFE 561 (606)
T ss_pred HHHHHHhhccccccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHccC-chHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 77777663211 1111122222111 2367777777777777655 3344567777777777777777777777
Q ss_pred HHHH
Q 010342 446 ELVD 449 (512)
Q Consensus 446 ~~~~ 449 (512)
+...
T Consensus 562 ksa~ 565 (606)
T KOG0547|consen 562 KSAQ 565 (606)
T ss_pred HHHH
Confidence 6543
No 46
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.66 E-value=2e-11 Score=104.97 Aligned_cols=386 Identities=13% Similarity=0.059 Sum_probs=265.2
Q ss_pred CCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHHHhhhcCCCCcchHhHHHHHHHHHccCChhHHHHHHHhcCCCCCCCc
Q 010342 59 GVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNE 138 (512)
Q Consensus 59 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 138 (512)
+...|...+-...-.+.+.|..+.|...+..++... +..-..|..|.... .+.+.+..+....... +
T Consensus 159 ~~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~------P~~W~AWleL~~li---t~~e~~~~l~~~l~~~----~ 225 (559)
T KOG1155|consen 159 GGEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRY------PWFWSAWLELSELI---TDIEILSILVVGLPSD----M 225 (559)
T ss_pred cccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcC------CcchHHHHHHHHhh---chHHHHHHHHhcCccc----c
Confidence 334455554444555566777777777666655422 22223333333222 2222222222222110 1
Q ss_pred chhH-HHHHHHHHhcCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHhccCchhHHHHHHHHHHhCCC--CCchhhHHHH
Q 010342 139 EFAC-GHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGY--LPSEHTYKVL 215 (512)
Q Consensus 139 ~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l 215 (512)
.... -.+..++......+++.+-.+.....|..-+...-+....+.-...++++|+.+|+++.+... .-|..+|+.+
T Consensus 226 h~M~~~F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~ 305 (559)
T KOG1155|consen 226 HWMKKFFLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNV 305 (559)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHH
Confidence 1111 123455666667888888888888887764544444455556678899999999999998631 1266788887
Q ss_pred HHHHhccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCH
Q 010342 216 VEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRI 295 (512)
Q Consensus 216 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 295 (512)
+..-.. .....++.+-...-..-.+.++-.+..-|.-.++.++|...|+..++.++. ....|+.+.+-|....+.
T Consensus 306 LYv~~~----~skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt 380 (559)
T KOG1155|consen 306 LYVKND----KSKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNT 380 (559)
T ss_pred HHHHhh----hHHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhccc
Confidence 755322 122333333333334445667788888899999999999999999988755 677899999999999999
Q ss_pred HHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHccCCHHHHHHHHH
Q 010342 296 EEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFN 375 (512)
Q Consensus 296 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 375 (512)
..|++-++...+.. +.|-..|-.+.++|.-.+.+.=|+-.|++...-. +.|+..|.+|..+|.+.++.++|++-|.
T Consensus 381 ~AAi~sYRrAvdi~--p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k--PnDsRlw~aLG~CY~kl~~~~eAiKCyk 456 (559)
T KOG1155|consen 381 HAAIESYRRAVDIN--PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK--PNDSRLWVALGECYEKLNRLEEAIKCYK 456 (559)
T ss_pred HHHHHHHHHHHhcC--chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHhccHHHHHHHHH
Confidence 99999999999876 7899999999999999999999999999865443 6688999999999999999999999999
Q ss_pred HHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcC----C-CCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 010342 376 CMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWP----S-NIH-DNYVYAAMIKGLCRSGKIHEAVHFLYELVD 449 (512)
Q Consensus 376 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~-~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 449 (512)
.....| ..+...+..|...|-+.++..+|...+++.++. | ..| .....--|..-+.+.+++++|.........
T Consensus 457 rai~~~-dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~ 535 (559)
T KOG1155|consen 457 RAILLG-DTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLK 535 (559)
T ss_pred HHHhcc-ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhc
Confidence 999876 446788999999999999999999999887642 2 122 222233355566677888877765544433
Q ss_pred CCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 010342 450 SGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKN 485 (512)
Q Consensus 450 ~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 485 (512)
. .-..++|..++++..+.
T Consensus 536 ~------------------~~e~eeak~LlReir~~ 553 (559)
T KOG1155|consen 536 G------------------ETECEEAKALLREIRKI 553 (559)
T ss_pred C------------------CchHHHHHHHHHHHHHh
Confidence 2 22346677777776643
No 47
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.65 E-value=9.8e-13 Score=113.53 Aligned_cols=412 Identities=13% Similarity=0.064 Sum_probs=259.2
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC-hhhHHHHHHHHHhcCChhhHHHHHHHHHHHhhhcCCCCcc-hHhHH
Q 010342 31 SYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN-SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVN-NAAFA 108 (512)
Q Consensus 31 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~ 108 (512)
.+.....-|.++|++++|++.+.+..+. .|| +..|.....+|...|+++++.+...+.++ +.|+ ...+.
T Consensus 117 ~lK~~GN~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALE-------l~P~Y~KAl~ 187 (606)
T KOG0547|consen 117 ALKTKGNKFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALE-------LNPDYVKALL 187 (606)
T ss_pred HHHhhhhhhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhh-------cCcHHHHHHH
Confidence 3556677788999999999999999986 688 78888999999999999998877666553 3333 22344
Q ss_pred HHHHHHHccCChhHHHHHHHhcCCCCCCCcchhHHHHHHHHHhcCChhhHHHHHH---------HHHHcC--CCCCcchH
Q 010342 109 NLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVY---------VMRKRG--LTPSLVSY 177 (512)
Q Consensus 109 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~---------~~~~~g--~~p~~~~~ 177 (512)
.-.+++-..|++++|+.=. +-..+...+....-.--+.+++. .+.+.+ +-|+....
T Consensus 188 RRA~A~E~lg~~~eal~D~-------------tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi 254 (606)
T KOG0547|consen 188 RRASAHEQLGKFDEALFDV-------------TVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFI 254 (606)
T ss_pred HHHHHHHhhccHHHHHHhh-------------hHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHH
Confidence 4456666778887765321 11111111111111111222222 122111 22343333
Q ss_pred HHHHHHHhccCchhHHHHHHHHHHhCCCCCchhhHHHHHHHHh--ccC---CHHHHHHHHHHHHhC------CCCCCc--
Q 010342 178 NSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLC--GES---DLEKARKVLQFMLSK------KDVDRT-- 244 (512)
Q Consensus 178 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~g---~~~~a~~~~~~~~~~------~~~~~~-- 244 (512)
.+....+...-. .....+.......+..++. ..+ .+..|...+.+-... ....+.
T Consensus 255 ~syf~sF~~~~~------------~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~l 322 (606)
T KOG0547|consen 255 ASYFGSFHADPK------------PLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAEL 322 (606)
T ss_pred HHHHhhcccccc------------ccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhH
Confidence 333333221000 0000000011111111110 001 122232222221110 000011
Q ss_pred ----ccHHHHHHHHHccCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHH
Q 010342 245 ----RICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTT 320 (512)
Q Consensus 245 ----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 320 (512)
.........+.-.|+.-.+..-|+..+.....++. .|-.+..+|....+.++.+..|......+ +.++.+|..
T Consensus 323 e~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ld--p~n~dvYyH 399 (606)
T KOG0547|consen 323 EYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLD--PENPDVYYH 399 (606)
T ss_pred HHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcC--CCCCchhHh
Confidence 11222223344578888999999999888665433 37777788999999999999999999887 677778888
Q ss_pred HHHHHhhcCCHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcC
Q 010342 321 IIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESN 400 (512)
Q Consensus 321 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 400 (512)
-.+...-.+++++|..-|++...-. +-+...|-.+.-+..+.+.+++++..|++..+. +|..++.|+.....+...+
T Consensus 400 RgQm~flL~q~e~A~aDF~Kai~L~--pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqq 476 (606)
T KOG0547|consen 400 RGQMRFLLQQYEEAIADFQKAISLD--PENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQ 476 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcC--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHH
Confidence 8888888999999999998865322 223444555555566888999999999999885 5778889999999999999
Q ss_pred CHHHHHHHHHHhhcCCCC-----CCH--HhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHH
Q 010342 401 QLDEAKRFWDDIVWPSNI-----HDN--YVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKR 473 (512)
Q Consensus 401 ~~~~a~~~~~~~~~~~~~-----~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 473 (512)
++++|.+.|+..++.... .+. .+--+++..- -.+++..|..++.+.++.+++ ....|..|...-.+.|+.+
T Consensus 477 qFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~Dpk-ce~A~~tlaq~~lQ~~~i~ 554 (606)
T KOG0547|consen 477 QFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIELDPK-CEQAYETLAQFELQRGKID 554 (606)
T ss_pred hHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHccCch-HHHHHHHHHHHHHHHhhHH
Confidence 999999999998764321 111 1222222222 238999999999999987643 5668999999999999999
Q ss_pred HHHHHHHHHHH
Q 010342 474 EAYQILREMRK 484 (512)
Q Consensus 474 ~a~~~~~~m~~ 484 (512)
+|+++|++...
T Consensus 555 eAielFEksa~ 565 (606)
T KOG0547|consen 555 EAIELFEKSAQ 565 (606)
T ss_pred HHHHHHHHHHH
Confidence 99999998753
No 48
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.64 E-value=3.7e-12 Score=107.46 Aligned_cols=288 Identities=14% Similarity=0.076 Sum_probs=187.0
Q ss_pred cCchhHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChhhHHHH
Q 010342 187 HGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNV 266 (512)
Q Consensus 187 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 266 (512)
.|++.+|+++..+..+.+ ......|..-.++.-..||.+.+-.++.++.+....+.....-...+.....|+.+.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~-e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHG-EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 466666666666555444 2223344445555556666666666666665443344444444555555666666666666
Q ss_pred HHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCc------HHHHHHHHHHHhhcCCHHHHHHHHHh
Q 010342 267 LVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPD------AVTFTTIIFGLLNVGRIQEALNLLYQ 340 (512)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~a~~~~~~ 340 (512)
+..+.+.++. ++.......++|.+.|++.....++..+.+.+...+. ..+|..+++-....+..+.-...+++
T Consensus 176 v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~ 254 (400)
T COG3071 176 VDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN 254 (400)
T ss_pred HHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 6666665544 5566677777788888888888888887776643221 23556666666666666655555655
Q ss_pred hcccCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCC
Q 010342 341 VMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420 (512)
Q Consensus 341 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 420 (512)
. ....+.++..-.+++.-+.++|+.++|.++..+..+.+..|+ ...+ -.+.+-++.+.-.+..+...+.. +.+
T Consensus 255 ~--pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~---L~~~-~~~l~~~d~~~l~k~~e~~l~~h-~~~ 327 (400)
T COG3071 255 Q--PRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR---LCRL-IPRLRPGDPEPLIKAAEKWLKQH-PED 327 (400)
T ss_pred c--cHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh---HHHH-HhhcCCCCchHHHHHHHHHHHhC-CCC
Confidence 3 223345566667777788888888888888888887765555 2222 23455666666666666655443 445
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 010342 421 NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKN 485 (512)
Q Consensus 421 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 485 (512)
+..+.+|...|.+.+.+.+|...|+...+. .|+..+|+.+..++.+.|++.+|.+..++....
T Consensus 328 p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 328 PLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 577888888888888888888888877665 678888888888888888888888888876643
No 49
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.63 E-value=1.6e-11 Score=101.93 Aligned_cols=455 Identities=11% Similarity=0.063 Sum_probs=216.5
Q ss_pred ccccCcHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhhH
Q 010342 4 LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERA 83 (512)
Q Consensus 4 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a 83 (512)
|+...++..|+.+++--...+-.....+-.-+...+...|++++|+..+..+.... .|+...+..+..+..-.|.+.+|
T Consensus 32 fls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y~eA 110 (557)
T KOG3785|consen 32 FLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQYIEA 110 (557)
T ss_pred HHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHHHHH
Confidence 44556677777777665544332222333445556667778888877777776643 45555666666566666777777
Q ss_pred HHHHHHHHHHhhhcCCCCcchHhHHHHHHHHHccCChhHHHHHHHhcCCCCCCCcchhHHHHHHHHHhcCChhhHHHHHH
Q 010342 84 NVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVY 163 (512)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 163 (512)
.++..+. .-++-.-..+...-.+.++-++.....+.+.+.- .---+|.......-.+.+|.+++.
T Consensus 111 ~~~~~ka----------~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~-----EdqLSLAsvhYmR~HYQeAIdvYk 175 (557)
T KOG3785|consen 111 KSIAEKA----------PKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTL-----EDQLSLASVHYMRMHYQEAIDVYK 175 (557)
T ss_pred HHHHhhC----------CCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhH-----HHHHhHHHHHHHHHHHHHHHHHHH
Confidence 6544322 1111122223344445566555555554444321 112223344444445666677766
Q ss_pred HHHHcCCCCCcchHHHH-HHHHhccCchhHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCC
Q 010342 164 VMRKRGLTPSLVSYNSI-VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVD 242 (512)
Q Consensus 164 ~~~~~g~~p~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 242 (512)
..... .|+....|.- .-+|.+..-++-+.+++.--.+. ++.+....+.......+.=+-..|+.-.+.+.+.....
T Consensus 176 rvL~d--n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~ 252 (557)
T KOG3785|consen 176 RVLQD--NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQE 252 (557)
T ss_pred HHHhc--ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhccccc
Confidence 66654 2333333332 23344555555555555554442 12233333333333322222222333333332221111
Q ss_pred CcccHHHHHHHHHccCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHHH
Q 010342 243 RTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTII 322 (512)
Q Consensus 243 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 322 (512)
-+..-..+-.-+.-..+-+.|++++-.+.+. -|. .-..++--|.+.+++.+|..+.+++. +.++.-|..-.
T Consensus 253 ~~f~~~l~rHNLVvFrngEgALqVLP~L~~~--IPE--ARlNL~iYyL~q~dVqeA~~L~Kdl~-----PttP~EyilKg 323 (557)
T KOG3785|consen 253 YPFIEYLCRHNLVVFRNGEGALQVLPSLMKH--IPE--ARLNLIIYYLNQNDVQEAISLCKDLD-----PTTPYEYILKG 323 (557)
T ss_pred chhHHHHHHcCeEEEeCCccHHHhchHHHhh--ChH--hhhhheeeecccccHHHHHHHHhhcC-----CCChHHHHHHH
Confidence 0000000001111123334555554444332 111 22234445677777777777776664 22222222111
Q ss_pred HHHh-------hcCCHHHHHHHHHhhcccCCCCCC-hhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHH
Q 010342 323 FGLL-------NVGRIQEALNLLYQVMPQRGYSPG-IVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVID 394 (512)
Q Consensus 323 ~~~~-------~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 394 (512)
-..+ ......-|.+.| ++.-..+..-| ..--.++..++.-..++++++..++.+...-...|...+| +..
T Consensus 324 vv~aalGQe~gSreHlKiAqqff-qlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N-~AQ 401 (557)
T KOG3785|consen 324 VVFAALGQETGSREHLKIAQQFF-QLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLN-LAQ 401 (557)
T ss_pred HHHHHhhhhcCcHHHHHHHHHHH-HHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhH-HHH
Confidence 1122 222344444444 32333333322 2223344455555566777777777666643333333333 556
Q ss_pred HHHhcCCHHHHHHHHHHhhcCCCCCCHHhH-HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhh-HHHHHHHHHhcCCH
Q 010342 395 GLCESNQLDEAKRFWDDIVWPSNIHDNYVY-AAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVC-YNVVIDGACKLSMK 472 (512)
Q Consensus 395 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~-~~~l~~~~~~~g~~ 472 (512)
+++..|++.+|+++|-.+....++ |..+| ..|.++|.+.+.++.|++++-++- .+.+..+ ...+..-|.+.+.+
T Consensus 402 Ak~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~~---t~~e~fsLLqlIAn~CYk~~eF 477 (557)
T KOG3785|consen 402 AKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKTN---TPSERFSLLQLIANDCYKANEF 477 (557)
T ss_pred HHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhcC---CchhHHHHHHHHHHHHHHHHHH
Confidence 677777777777777766544433 33344 445567777777777766654432 1212222 33344566667766
Q ss_pred HHHHHHHHHHHHCCCCCChHHH
Q 010342 473 REAYQILREMRKNGLNPDAVTW 494 (512)
Q Consensus 473 ~~a~~~~~~m~~~~~~p~~~~~ 494 (512)
--|.+.|..+.. +.|++..|
T Consensus 478 yyaaKAFd~lE~--lDP~pEnW 497 (557)
T KOG3785|consen 478 YYAAKAFDELEI--LDPTPENW 497 (557)
T ss_pred HHHHHhhhHHHc--cCCCcccc
Confidence 666666666654 34444443
No 50
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.63 E-value=2.7e-12 Score=104.99 Aligned_cols=289 Identities=13% Similarity=0.062 Sum_probs=188.9
Q ss_pred CchhHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCc---ccHHHHHHHHHccCChhhHH
Q 010342 188 GGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRT---RICNIYLRALCLIKNPTELL 264 (512)
Q Consensus 188 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~ 264 (512)
++.++|.++|-+|.+.. +.+..+-.+|.+.|.+.|..+.|+++.+.+.++...+.. .....+.+-|...|-++.|+
T Consensus 49 ~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE 127 (389)
T COG2956 49 NQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAE 127 (389)
T ss_pred cCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 45556666666665532 233444455556666666666666666666543322221 13344455566666666666
Q ss_pred HHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCc---HHHHHHHHHHHhhcCCHHHHHHHHHhh
Q 010342 265 NVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPD---AVTFTTIIFGLLNVGRIQEALNLLYQV 341 (512)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~ 341 (512)
.+|..+.+.+. .-......|+..|-...+|++|+++-+++.+.+.-+.+ ..-|..+...+....+.+.|..++.+.
T Consensus 128 ~~f~~L~de~e-fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kA 206 (389)
T COG2956 128 DIFNQLVDEGE-FAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKA 206 (389)
T ss_pred HHHHHHhcchh-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 66666665432 23456677888888889999999888888766532222 233556666677788888899988887
Q ss_pred cccCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCH
Q 010342 342 MPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDN 421 (512)
Q Consensus 342 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 421 (512)
++.. +..+..--.+.+.....|+++.|.+.++...+.+..--+.+...|..+|...|+.++....+.++.+.. +..
T Consensus 207 lqa~--~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~--~g~ 282 (389)
T COG2956 207 LQAD--KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETN--TGA 282 (389)
T ss_pred HhhC--ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc--CCc
Confidence 7554 233333344667788899999999999999887655556678888899999999999999998887654 333
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh---cCCHHHHHHHHHHHHH
Q 010342 422 YVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACK---LSMKREAYQILREMRK 484 (512)
Q Consensus 422 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~---~g~~~~a~~~~~~m~~ 484 (512)
..-..+.+.-....-.+.|...+.+-+.. +|+...+..++..-.. .|.+.+....++.|..
T Consensus 283 ~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvg 346 (389)
T COG2956 283 DAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVG 346 (389)
T ss_pred cHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHH
Confidence 44455555555555667777776665554 7888888888877654 3456666777777764
No 51
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.62 E-value=5.2e-11 Score=105.07 Aligned_cols=285 Identities=12% Similarity=0.055 Sum_probs=226.3
Q ss_pred CCchhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChhhHHHHHHHHHhcCCCCChhhHHHH
Q 010342 206 LPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTV 285 (512)
Q Consensus 206 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 285 (512)
.-+......-.+-+...+++.+..++.+.+.+. .+.....+..-+.++...|+..+..-+=..+.+..+. .+.+|-++
T Consensus 241 ~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~-dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~-~a~sW~aV 318 (611)
T KOG1173|consen 241 AENLDLLAEKADRLYYGCRFKECLKITEELLEK-DPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPS-KALSWFAV 318 (611)
T ss_pred hhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhh-CCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCC-CCcchhhH
Confidence 345555666667778889999999999999864 5566667777777899999998888888888877544 77899999
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHccC
Q 010342 286 INGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLR 365 (512)
Q Consensus 286 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 365 (512)
.--|...|+..+|.+.|.+....+ +.-...|-.+...++-.+..++|+..+...-+-. +-...-+.-+.--|.+.+
T Consensus 319 g~YYl~i~k~seARry~SKat~lD--~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~--~G~hlP~LYlgmey~~t~ 394 (611)
T KOG1173|consen 319 GCYYLMIGKYSEARRYFSKATTLD--PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM--PGCHLPSLYLGMEYMRTN 394 (611)
T ss_pred HHHHHHhcCcHHHHHHHHHHhhcC--ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc--cCCcchHHHHHHHHHHhc
Confidence 999999999999999999988765 4556788899999999999999999887753222 212222223445678899
Q ss_pred CHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcC------CCCCCHHhHHHHHHHHHhcCCHHH
Q 010342 366 RVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWP------SNIHDNYVYAAMIKGLCRSGKIHE 439 (512)
Q Consensus 366 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~g~~~~ 439 (512)
+++.|.++|.+..... |.|+..++-+.-.....+.+.+|..+|+..+.. ....-..+++.|..+|.+.+.+++
T Consensus 395 n~kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~e 473 (611)
T KOG1173|consen 395 NLKLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEE 473 (611)
T ss_pred cHHHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHH
Confidence 9999999999988753 667788888888888889999999999987621 001134478999999999999999
Q ss_pred HHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHh
Q 010342 440 AVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKL 500 (512)
Q Consensus 440 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~ 500 (512)
|+..+++.+... +.+..++.++.-.|...|+++.|.+.|.+.+- +.||..+-..+++.
T Consensus 474 AI~~~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL~~ 531 (611)
T KOG1173|consen 474 AIDYYQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELLKL 531 (611)
T ss_pred HHHHHHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHHHH
Confidence 999999999875 44888999999999999999999999999886 78988766666543
No 52
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.61 E-value=4e-13 Score=120.54 Aligned_cols=281 Identities=13% Similarity=0.088 Sum_probs=196.9
Q ss_pred chhHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHhCCC--CCCcccHHHHHHHHHccCChhhHHHH
Q 010342 189 GCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD--VDRTRICNIYLRALCLIKNPTELLNV 266 (512)
Q Consensus 189 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~ 266 (512)
+..+|...|....+ .+.-.......+..+|...+++++|+++|+.+..... ..+..+|...+--+ .+. -++..
T Consensus 334 ~~~~A~~~~~klp~-h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHL---q~~-v~Ls~ 408 (638)
T KOG1126|consen 334 NCREALNLFEKLPS-HHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHL---QDE-VALSY 408 (638)
T ss_pred HHHHHHHHHHhhHH-hcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHH---Hhh-HHHHH
Confidence 45677777777433 2233446667777888888888888888888765321 11233444433222 111 12222
Q ss_pred H-HHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhhcccC
Q 010342 267 L-VFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQR 345 (512)
Q Consensus 267 ~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 345 (512)
+ ..+.+.. +-.+.+|-++.++|.-+++.+.|++.|++..+.+ +....+|+.+..-+.....++.|...|+..+
T Consensus 409 Laq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld--p~faYayTLlGhE~~~~ee~d~a~~~fr~Al--- 482 (638)
T KOG1126|consen 409 LAQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD--PRFAYAYTLLGHESIATEEFDKAMKSFRKAL--- 482 (638)
T ss_pred HHHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC--CccchhhhhcCChhhhhHHHHhHHHHHHhhh---
Confidence 2 2222222 3467788888888888899999999998888765 5577888888888888888888888887755
Q ss_pred CCCCChhhH---HHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHH
Q 010342 346 GYSPGIVTY---NAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNY 422 (512)
Q Consensus 346 ~~~~~~~~~---~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 422 (512)
..|+..| ..+...|.+.++++.|+-.|+...+.+ |-+......+...+.+.|+.++|+++++++...+ +.|..
T Consensus 483 --~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld-~kn~l 558 (638)
T KOG1126|consen 483 --GVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLD-PKNPL 558 (638)
T ss_pred --cCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC-CCCch
Confidence 3344444 446677888888999999888888765 5566777888888888889999999999887665 44555
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 010342 423 VYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKN 485 (512)
Q Consensus 423 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 485 (512)
.--..+..+...+++++|...++++.+.- +-+...+..+...|.+.|+.+.|+.-|--|.+.
T Consensus 559 ~~~~~~~il~~~~~~~eal~~LEeLk~~v-P~es~v~~llgki~k~~~~~~~Al~~f~~A~~l 620 (638)
T KOG1126|consen 559 CKYHRASILFSLGRYVEALQELEELKELV-PQESSVFALLGKIYKRLGNTDLALLHFSWALDL 620 (638)
T ss_pred hHHHHHHHHHhhcchHHHHHHHHHHHHhC-cchHHHHHHHHHHHHHHccchHHHHhhHHHhcC
Confidence 55556667777888899999888888752 335566777888888889888888888777763
No 53
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.61 E-value=8.5e-12 Score=105.35 Aligned_cols=292 Identities=15% Similarity=0.083 Sum_probs=183.9
Q ss_pred cCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHhccCchhHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCCHHHHHHH
Q 010342 152 SGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKV 231 (512)
Q Consensus 152 ~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 231 (512)
.|+|..|+++..+-.+.+-. ....|..-..+.-..|+.+.+-.++.++.+..-.++...+....+.....||++.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 35555555555554444322 22233333444444555555555555554432233334444444455555555555555
Q ss_pred HHHHHhCCCCCCcccHHHHHHHHHccCChhhHHHHHHHHHhcCCCCC-------hhhHHHHHHHHHhcCCHHHHHHHHHH
Q 010342 232 LQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPD-------VITLNTVINGFCKMGRIEEALKVLND 304 (512)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~~~~~~a~~~~~~ 304 (512)
+..+.+. .+..+.......++|.+.|++..+..++..+.+.+.-.+ ..+|..+++-....+..+.-...|++
T Consensus 176 v~~ll~~-~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~ 254 (400)
T COG3071 176 VDQLLEM-TPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN 254 (400)
T ss_pred HHHHHHh-CcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 5555432 333344555555555555555555555555555544332 23566667666666666666677777
Q ss_pred HhhCCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCC
Q 010342 305 MVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVA 384 (512)
Q Consensus 305 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 384 (512)
....- +.++..-.+++.-+.+.|+.++|.+++.+.++. +..|+ . ...-.+.+.++...-++..+...+.. +.
T Consensus 255 ~pr~l--r~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~-~~D~~---L-~~~~~~l~~~d~~~l~k~~e~~l~~h-~~ 326 (400)
T COG3071 255 QPRKL--RNDPELVVAYAERLIRLGDHDEAQEIIEDALKR-QWDPR---L-CRLIPRLRPGDPEPLIKAAEKWLKQH-PE 326 (400)
T ss_pred ccHHh--hcChhHHHHHHHHHHHcCChHHHHHHHHHHHHh-ccChh---H-HHHHhhcCCCCchHHHHHHHHHHHhC-CC
Confidence 66543 456677778888889999999999999887744 23333 2 22234567788888777777776642 55
Q ss_pred ChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 010342 385 DSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPN 455 (512)
Q Consensus 385 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~ 455 (512)
++..+..|...|.+.+.+.+|...|+...+ ..|+..+|+.+.+++.+.|+..+|.++.++....-.+|+
T Consensus 327 ~p~L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~~~ 395 (400)
T COG3071 327 DPLLLSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAELADALDQLGEPEEAEQVRREALLLTRQPN 395 (400)
T ss_pred ChhHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCC
Confidence 667888999999999999999999998765 478899999999999999999999999988765433443
No 54
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.57 E-value=1.5e-12 Score=116.89 Aligned_cols=290 Identities=11% Similarity=-0.003 Sum_probs=215.7
Q ss_pred ChhhHHHHHHHHHHcCCCCCc-chHHHHHHHHhccCchhHHHHHHHHHHhCCC--CCchhhHHHHHHHHhccCCHHHHHH
Q 010342 154 RNHGASRVVYVMRKRGLTPSL-VSYNSIVHGLCKHGGCMRAYQLLEEGIQFGY--LPSEHTYKVLVEGLCGESDLEKARK 230 (512)
Q Consensus 154 ~~~~a~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~ 230 (512)
+..+|...|..+... .+|. .+...+.++|...+++++|..+|+.+.+... .-+...|.+.+-..- -+-+..
T Consensus 334 ~~~~A~~~~~klp~h--~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq----~~v~Ls 407 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH--HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQ----DEVALS 407 (638)
T ss_pred HHHHHHHHHHhhHHh--cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHH----hhHHHH
Confidence 456777888775554 2333 4556678888888888888888888876421 125567777665442 233344
Q ss_pred HHHHHHhCCCCCCcccHHHHHHHHHccCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCC
Q 010342 231 VLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKF 310 (512)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 310 (512)
.+.+-.-.-.+..+.+|-.+..+|.-+++.+.|++.|.+..+.... ...+|+.+..-+.....+|.|...|+......
T Consensus 408 ~Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~-faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~- 485 (638)
T KOG1126|consen 408 YLAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPR-FAYAYTLLGHESIATEEFDKAMKSFRKALGVD- 485 (638)
T ss_pred HHHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCc-cchhhhhcCChhhhhHHHHhHHHHHHhhhcCC-
Confidence 4433333445666778888888888888999998888888776433 67888888888888999999999999988543
Q ss_pred CCCcHHHHHHHHHHHhhcCCHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHH
Q 010342 311 CAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYA 390 (512)
Q Consensus 311 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 390 (512)
+.+-..|.-+...|.+.++++.|.-.|++++.-. +.+.+....+...+.+.|+.++|+.+++++.... +-|+..--
T Consensus 486 -~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN--P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld-~kn~l~~~ 561 (638)
T KOG1126|consen 486 -PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN--PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLD-PKNPLCKY 561 (638)
T ss_pred -chhhHHHHhhhhheeccchhhHHHHHHHhhhcCC--ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC-CCCchhHH
Confidence 3445556667788999999999999998865433 4456667778888899999999999999998865 34555444
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh
Q 010342 391 IVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNI 456 (512)
Q Consensus 391 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~ 456 (512)
..+..+...+++++|...++++.+. ++.+..++..+...|.+.|+.+.|+.-|.-+.+..++++.
T Consensus 562 ~~~~il~~~~~~~eal~~LEeLk~~-vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 562 HRASILFSLGRYVEALQELEELKEL-VPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQ 626 (638)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccch
Confidence 5566777889999999999999865 3556678888999999999999999999888887555443
No 55
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.57 E-value=1.5e-10 Score=96.30 Aligned_cols=423 Identities=12% Similarity=0.026 Sum_probs=260.0
Q ss_pred cccccCcHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhh
Q 010342 3 QLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVER 82 (512)
Q Consensus 3 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~ 82 (512)
++...|++++|...+..+.+.. .|+...+-.|.-.+.-.|.+.+|..+-.+..+ ++-.-..+++.-.+.++-++
T Consensus 66 C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k-----~pL~~RLlfhlahklndEk~ 139 (557)
T KOG3785|consen 66 CYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQYIEAKSIAEKAPK-----TPLCIRLLFHLAHKLNDEKR 139 (557)
T ss_pred HHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHHHHHHHHHhhCCC-----ChHHHHHHHHHHHHhCcHHH
Confidence 5778999999999999988864 44677788888888889999999988776543 44455566677778888777
Q ss_pred HHHHHHHHHHHhhhcCCCCcchHhHHHHHHHHHccCChhHHHHHHHhcCCCCCCCcchhHHH-HHHHHHhcCChhhHHHH
Q 010342 83 ANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGH-MIDSLCRSGRNHGASRV 161 (512)
Q Consensus 83 a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~a~~~ 161 (512)
-....+.+-+...+ --+|....-..-.+.+|++++.++...+ |.-...|. +.-+|.+..-++-+.++
T Consensus 140 ~~~fh~~LqD~~Ed----------qLSLAsvhYmR~HYQeAIdvYkrvL~dn--~ey~alNVy~ALCyyKlDYydvsqev 207 (557)
T KOG3785|consen 140 ILTFHSSLQDTLED----------QLSLASVHYMRMHYQEAIDVYKRVLQDN--PEYIALNVYMALCYYKLDYYDVSQEV 207 (557)
T ss_pred HHHHHHHHhhhHHH----------HHhHHHHHHHHHHHHHHHHHHHHHHhcC--hhhhhhHHHHHHHHHhcchhhhHHHH
Confidence 77666555433211 1235555555667899999999988765 33344444 34567788888999999
Q ss_pred HHHHHHcCCCCCcchHHHHHHHHhccCchhHHHHHHHHHHhCCCCCchhhHHHHHH-HHhccCCHHHHHHHHHHHHhCCC
Q 010342 162 VYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVE-GLCGESDLEKARKVLQFMLSKKD 240 (512)
Q Consensus 162 ~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~g~~~~a~~~~~~~~~~~~ 240 (512)
+....+. .+.++...|.......+.=+...|.+-...+...+-..-+ .-.-+++ -+.--.+-+.|.+++-.+.. .
T Consensus 208 l~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~-f~~~l~rHNLVvFrngEgALqVLP~L~~--~ 283 (557)
T KOG3785|consen 208 LKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYP-FIEYLCRHNLVVFRNGEGALQVLPSLMK--H 283 (557)
T ss_pred HHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccch-hHHHHHHcCeEEEeCCccHHHhchHHHh--h
Confidence 9887775 2223344444444433432233344444444333211100 0011111 11112344667777665542 2
Q ss_pred CCCcccHHHHHHHHHccCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcC-------CHHHHHHHHHHHhhCCCCCC
Q 010342 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMG-------RIEEALKVLNDMVAGKFCAP 313 (512)
Q Consensus 241 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-------~~~~a~~~~~~~~~~~~~~~ 313 (512)
.|. .-..++-.|.+.++.++|..+...+.-. .|-......++ ++..| ...-|.+.|.-.-.++....
T Consensus 284 IPE--ARlNL~iYyL~q~dVqeA~~L~Kdl~Pt--tP~EyilKgvv--~aalGQe~gSreHlKiAqqffqlVG~Sa~ecD 357 (557)
T KOG3785|consen 284 IPE--ARLNLIIYYLNQNDVQEAISLCKDLDPT--TPYEYILKGVV--FAALGQETGSREHLKIAQQFFQLVGESALECD 357 (557)
T ss_pred ChH--hhhhheeeecccccHHHHHHHHhhcCCC--ChHHHHHHHHH--HHHhhhhcCcHHHHHHHHHHHHHhcccccccc
Confidence 222 2334555677889999998887665311 12222222222 22222 35557777766555443223
Q ss_pred cHHHHHHHHHHHhhcCCHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHH
Q 010342 314 DAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVI 393 (512)
Q Consensus 314 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 393 (512)
+.....++..++.-..++++.+..+.. ++..=...|...+ .+.++++..|++.+|+++|-.+....++.+..-...|.
T Consensus 358 TIpGRQsmAs~fFL~~qFddVl~YlnS-i~sYF~NdD~Fn~-N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LA 435 (557)
T KOG3785|consen 358 TIPGRQSMASYFFLSFQFDDVLTYLNS-IESYFTNDDDFNL-NLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLA 435 (557)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHH-HHHHhcCcchhhh-HHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHH
Confidence 334455666666667778888887766 3333233344444 47788999999999999998776654443333345566
Q ss_pred HHHHhcCCHHHHHHHHHHhhcCCCCCCHH-hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHH
Q 010342 394 DGLCESNQLDEAKRFWDDIVWPSNIHDNY-VYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYN 460 (512)
Q Consensus 394 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~ 460 (512)
++|.+.+.++.|..++-++.. +.+.. ....+..-|.+.+.+=-|.+.|+.+... .|++..|.
T Consensus 436 rCyi~nkkP~lAW~~~lk~~t---~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~l--DP~pEnWe 498 (557)
T KOG3785|consen 436 RCYIRNKKPQLAWDMMLKTNT---PSERFSLLQLIANDCYKANEFYYAAKAFDELEIL--DPTPENWE 498 (557)
T ss_pred HHHHhcCCchHHHHHHHhcCC---chhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHcc--CCCccccC
Confidence 899999999998887766532 22333 3445557788889888888899888776 56666664
No 56
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.56 E-value=1.4e-09 Score=97.62 Aligned_cols=466 Identities=11% Similarity=0.079 Sum_probs=241.7
Q ss_pred ccccCcHHHHHHHHHHHHhCC-CCCChHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhh
Q 010342 4 LCGLSRVGEAHKLFFDMKSRG-HVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVER 82 (512)
Q Consensus 4 ~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~ 82 (512)
+.++|++-..+..|++.+..= +..-...|...+...-..+-++-+..++++.++. ++..-...|..+...++.++
T Consensus 112 l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie~L~~~d~~~e 187 (835)
T KOG2047|consen 112 LIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIEYLAKSDRLDE 187 (835)
T ss_pred HHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHHHHHhccchHH
Confidence 456777777777777766551 1112335777777777777777777777777763 34445566667777777777
Q ss_pred HHHHHHHHHHHhhhcCCCCc-chH--------------------------------------hHHHHHHHHHccCChhHH
Q 010342 83 ANVLMFKLWERMKEEEDLSV-NNA--------------------------------------AFANLVDSLCREGYVNEV 123 (512)
Q Consensus 83 a~~~~~~~~~~~~~~~~~~~-~~~--------------------------------------~~~~l~~~~~~~g~~~~a 123 (512)
|.+.+..++.+-.......+ +.. .+.+|.+.|.+.|.++.|
T Consensus 188 aa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~eka 267 (835)
T KOG2047|consen 188 AAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKA 267 (835)
T ss_pred HHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHH
Confidence 76666555432221111111 111 244455555555555555
Q ss_pred HHHHHhcCCCCCCCcchhHHHHHHHHHhcCC----------------------hhhHHHHHHHHHHcCC-----------
Q 010342 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGR----------------------NHGASRVVYVMRKRGL----------- 170 (512)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------------------~~~a~~~~~~~~~~g~----------- 170 (512)
..+|++....- .++.-|..+.++|+.-.. ++-....|+.+.....
T Consensus 268 rDvyeeai~~v--~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn 345 (835)
T KOG2047|consen 268 RDVYEEAIQTV--MTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQN 345 (835)
T ss_pred HHHHHHHHHhh--eehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcC
Confidence 55554433221 122222333333321100 0111122222221110
Q ss_pred CCCcchHHHHHHHHhccCchhHHHHHHHHHHhCCCCC------chhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC-
Q 010342 171 TPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLP------SEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR- 243 (512)
Q Consensus 171 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~- 243 (512)
+.++..|..-.. ...|+..+-...|.++++. +.| -...|..+...|-..|+++.|..+|++...-+.+.-
T Consensus 346 ~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~ 422 (835)
T KOG2047|consen 346 PHNVEEWHKRVK--LYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVE 422 (835)
T ss_pred CccHHHHHhhhh--hhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchH
Confidence 001112222111 1234455555555555542 122 123567777788888888888888887765433222
Q ss_pred --cccHHHHHHHHHccCChhhHHHHHHHHHhcCCCC-----------------ChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 010342 244 --TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQP-----------------DVITLNTVINGFCKMGRIEEALKVLND 304 (512)
Q Consensus 244 --~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-----------------~~~~~~~l~~~~~~~~~~~~a~~~~~~ 304 (512)
..+|-.....-.+..+++.|+++++......-.| +...|...++.-...|-++....++++
T Consensus 423 dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdr 502 (835)
T KOG2047|consen 423 DLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDR 502 (835)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 2234444445555677777777776654322111 223445555555666778888888888
Q ss_pred HhhCCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHc---cCCHHHHHHHHHHHHhCC
Q 010342 305 MVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR---LRRVEEAKEVFNCMLGIG 381 (512)
Q Consensus 305 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~ 381 (512)
+.+.....|.. .......+-.+.-++++.+.+++-+.-...+.-...|+..+.-+.+ ...++.|..+|++.++ |
T Consensus 503 iidLriaTPqi--i~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~ 579 (835)
T KOG2047|consen 503 IIDLRIATPQI--IINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-G 579 (835)
T ss_pred HHHHhcCCHHH--HHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-c
Confidence 87765433332 2222223445566788888887755444333334556665554433 3468899999999988 5
Q ss_pred CCCChHhHHHH--HHHHHhcCCHHHHHHHHHHhhcCCCCCC--HHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChh
Q 010342 382 VVADSTTYAIV--IDGLCESNQLDEAKRFWDDIVWPSNIHD--NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIV 457 (512)
Q Consensus 382 ~~~~~~~~~~l--~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~ 457 (512)
.+|...-+-.| ...-.+.|-...|..+++++... +++. ...|+..|.--...=-+.....++++.++. -|+..
T Consensus 580 Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~-v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~--Lp~~~ 656 (835)
T KOG2047|consen 580 CPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSA-VKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIES--LPDSK 656 (835)
T ss_pred CCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHh--CChHH
Confidence 66544322222 22223457777888888886532 2322 125565554433333334455566666554 34433
Q ss_pred hHHH---HHHHHHhcCCHHHHHHHHHHHHH
Q 010342 458 CYNV---VIDGACKLSMKREAYQILREMRK 484 (512)
Q Consensus 458 ~~~~---l~~~~~~~g~~~~a~~~~~~m~~ 484 (512)
.-.. ....-++.|..++|..++....+
T Consensus 657 ~r~mclrFAdlEtklGEidRARaIya~~sq 686 (835)
T KOG2047|consen 657 AREMCLRFADLETKLGEIDRARAIYAHGSQ 686 (835)
T ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHhhhh
Confidence 3222 22333456777777776665544
No 57
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.53 E-value=5.8e-11 Score=110.16 Aligned_cols=254 Identities=17% Similarity=0.164 Sum_probs=169.6
Q ss_pred HHHHHHHhCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHHHh
Q 010342 15 KLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERM 94 (512)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 94 (512)
.++-.+...|+.|+..+|.++|.-|+..|+.+.|- +|.-|.-+..+-+...++.++.+....++.+.+.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk---------- 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK---------- 79 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC----------
Confidence 45667788899999999999999999999999998 9999988776667778888888888888777652
Q ss_pred hhcCCCCcchHhHHHHHHHHHccCChhH---HHHHHHhc----CCCCCC-CcchhH-------------HHHHHHHHhcC
Q 010342 95 KEEEDLSVNNAAFANLVDSLCREGYVNE---VFRIAEDM----PQGKSV-NEEFAC-------------GHMIDSLCRSG 153 (512)
Q Consensus 95 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~---a~~~~~~~----~~~~~~-~~~~~~-------------~~l~~~~~~~~ 153 (512)
.|...+|..|..+|...||+.. ..+.++.+ ...|.. |....+ ...+....-.|
T Consensus 80 ------ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eg 153 (1088)
T KOG4318|consen 80 ------EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEG 153 (1088)
T ss_pred ------CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHH
Confidence 5677889999999999988654 33322222 122221 111110 11222223334
Q ss_pred ChhhHHHHHHHHHHcCCCCCcchHHHHHHHHhccCc-hhHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCCHHHHHHHH
Q 010342 154 RNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGG-CMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVL 232 (512)
Q Consensus 154 ~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 232 (512)
-++.+++++..+...... . ++...++-+..... +++......... + .|+..+|..++.+....|+.+.|..++
T Consensus 154 lwaqllkll~~~Pvsa~~-~--p~~vfLrqnv~~ntpvekLl~~cksl~--e-~~~s~~l~a~l~~alaag~~d~Ak~ll 227 (1088)
T KOG4318|consen 154 LWAQLLKLLAKVPVSAWN-A--PFQVFLRQNVVDNTPVEKLLNMCKSLV--E-APTSETLHAVLKRALAAGDVDGAKNLL 227 (1088)
T ss_pred HHHHHHHHHhhCCccccc-c--hHHHHHHHhccCCchHHHHHHHHHHhh--c-CCChHHHHHHHHHHHhcCchhhHHHHH
Confidence 444444444333322110 0 11112333333222 222222222222 2 588999999999999999999999999
Q ss_pred HHHHhCCCCCCcccHHHHHHHHHccCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCC
Q 010342 233 QFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGR 294 (512)
Q Consensus 233 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 294 (512)
..|.+.|.+....-|..++-+ .++...+..+++-|.+.|+.|+..|+...+..+..+|.
T Consensus 228 ~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 228 YEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred HHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 999999988887766666655 78888888899999999999999998877776666443
No 58
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.50 E-value=3.4e-10 Score=100.05 Aligned_cols=285 Identities=10% Similarity=-0.013 Sum_probs=199.4
Q ss_pred CcchHHHHHHHHhccCchhHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCcccHHHHHH
Q 010342 173 SLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLR 252 (512)
Q Consensus 173 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 252 (512)
++.....-..-+...+++.+..++.+...+.. ++....+..-|.++...|+..+-..+=.++.+ ..|..+.+|..+.-
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~-~yP~~a~sW~aVg~ 320 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVD-LYPSKALSWFAVGC 320 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHH-hCCCCCcchhhHHH
Confidence 44444555556666788888888888887754 56666666667777788887776666666664 35555667777777
Q ss_pred HHHccCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCCHH
Q 010342 253 ALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQ 332 (512)
Q Consensus 253 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 332 (512)
.|...|+.++|.+.|.+....... =...|-.+...|+-.|..+.|+..+....+.- +.....+--+..-|.+.+..+
T Consensus 321 YYl~i~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~--~G~hlP~LYlgmey~~t~n~k 397 (611)
T KOG1173|consen 321 YYLMIGKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM--PGCHLPSLYLGMEYMRTNNLK 397 (611)
T ss_pred HHHHhcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc--cCCcchHHHHHHHHHHhccHH
Confidence 777778888888888876654332 23467778888888888888888887766532 222222333444577788888
Q ss_pred HHHHHHHhhcccCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhC----C--CCCChHhHHHHHHHHHhcCCHHHHH
Q 010342 333 EALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGI----G--VVADSTTYAIVIDGLCESNQLDEAK 406 (512)
Q Consensus 333 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~--~~~~~~~~~~l~~~~~~~g~~~~a~ 406 (512)
.|.+.|.+.+... +.|+...+-+.-.....+.+.+|..+|+..+.. + ...-..+++.|..+|.+.+.+++|+
T Consensus 398 LAe~Ff~~A~ai~--P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI 475 (611)
T KOG1173|consen 398 LAEKFFKQALAIA--PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAI 475 (611)
T ss_pred HHHHHHHHHHhcC--CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHH
Confidence 8888887754333 445666777766667778888888888877631 0 0113345788888888899999999
Q ss_pred HHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 010342 407 RFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGAC 467 (512)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 467 (512)
..++..+... +.+..++.++.-.|...|+++.|.+.|.+.... .|+..+-..++..+.
T Consensus 476 ~~~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL~l--~p~n~~~~~lL~~ai 533 (611)
T KOG1173|consen 476 DYYQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKALAL--KPDNIFISELLKLAI 533 (611)
T ss_pred HHHHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHHhc--CCccHHHHHHHHHHH
Confidence 9998888664 667888888888888889999999988887654 677656555555443
No 59
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.49 E-value=4.3e-11 Score=102.14 Aligned_cols=201 Identities=11% Similarity=0.074 Sum_probs=158.6
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhhcccCCCCCChhhHHHH
Q 010342 278 DVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAV 357 (512)
Q Consensus 278 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 357 (512)
....+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|.+.+.+.+... +.+...+..+
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~~ 105 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHD--PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN--PNNGDVLNNY 105 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCHHHHHHH
Confidence 34566777888888899999999998887654 4567777888888888999999999888876543 3445667777
Q ss_pred HHHHHccCCHHHHHHHHHHHHhCCC-CCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCC
Q 010342 358 LRGLFRLRRVEEAKEVFNCMLGIGV-VADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGK 436 (512)
Q Consensus 358 ~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 436 (512)
...+...|++++|...+++...... +.....+..+..++...|++++|...+++..... +.+...+..+...+...|+
T Consensus 106 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~ 184 (234)
T TIGR02521 106 GTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQ 184 (234)
T ss_pred HHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCC
Confidence 8888889999999999998876422 2234567778888899999999999999988654 4456678888899999999
Q ss_pred HHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 010342 437 IHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRK 484 (512)
Q Consensus 437 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 484 (512)
+++|...+++..+.. +.+...+..+...+...|+.++|..+.+.+..
T Consensus 185 ~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 185 YKDARAYLERYQQTY-NQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 999999999988762 44666777788888889999999998888765
No 60
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.47 E-value=5.8e-09 Score=88.84 Aligned_cols=317 Identities=12% Similarity=0.057 Sum_probs=228.8
Q ss_pred CCCCcchHHHHHHHHhc--cCchhHHHHHHHHHHhC-CCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCccc
Q 010342 170 LTPSLVSYNSIVHGLCK--HGGCMRAYQLLEEGIQF-GYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRI 246 (512)
Q Consensus 170 ~~p~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 246 (512)
+.|+..+....+.+++. .++...+...+-.+... -++-|+.....+..++...|+.++|...|++.... .+.....
T Consensus 190 ~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~-dpy~i~~ 268 (564)
T KOG1174|consen 190 VPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA-NPDNVEA 268 (564)
T ss_pred cCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC-Chhhhhh
Confidence 34444444455555544 45555555555444433 45668889999999999999999999999988643 3333445
Q ss_pred HHHHHHHHHccCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHh
Q 010342 247 CNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLL 326 (512)
Q Consensus 247 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 326 (512)
...+...+.+.|+.+....+...+....-. +...|..-.......++++.|+.+-++..+.. +.+...+..-...+.
T Consensus 269 MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~-ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~--~r~~~alilKG~lL~ 345 (564)
T KOG1174|consen 269 MDLYAVLLGQEGGCEQDSALMDYLFAKVKY-TASHWFVHAQLLYDEKKFERALNFVEKCIDSE--PRNHEALILKGRLLI 345 (564)
T ss_pred HHHHHHHHHhccCHhhHHHHHHHHHhhhhc-chhhhhhhhhhhhhhhhHHHHHHHHHHHhccC--cccchHHHhccHHHH
Confidence 556666677888888888777776654311 33334334444556688999999999988776 567777777777888
Q ss_pred hcCCHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHH-HHHHh-cCCHHH
Q 010342 327 NVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVI-DGLCE-SNQLDE 404 (512)
Q Consensus 327 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~-~~~~~-~g~~~~ 404 (512)
..++.++|.-.|+....-. +-+..+|..|+..|...|.+.+|...-+...+. ++.+..+...+. ..+.- ...-++
T Consensus 346 ~~~R~~~A~IaFR~Aq~La--p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEK 422 (564)
T KOG1174|consen 346 ALERHTQAVIAFRTAQMLA--PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREK 422 (564)
T ss_pred hccchHHHHHHHHHHHhcc--hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHH
Confidence 9999999999898753222 457789999999999999999998887776653 355666666653 33332 334588
Q ss_pred HHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 010342 405 AKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRK 484 (512)
Q Consensus 405 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 484 (512)
|.+++++..+.. +.-....+.+...+...|..++++.++++.... .||....+.|...+...+.+++|.+.|.....
T Consensus 423 AKkf~ek~L~~~-P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr 499 (564)
T KOG1174|consen 423 AKKFAEKSLKIN-PIYTPAVNLIAELCQVEGPTKDIIKLLEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALR 499 (564)
T ss_pred HHHHHHhhhccC-CccHHHHHHHHHHHHhhCccchHHHHHHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 999999887653 333446778888899999999999999988774 78999999999999999999999999999887
Q ss_pred CCCCCC-hHHHHHHH
Q 010342 485 NGLNPD-AVTWRILD 498 (512)
Q Consensus 485 ~~~~p~-~~~~~~l~ 498 (512)
+.|. ..+...|-
T Consensus 500 --~dP~~~~sl~Gl~ 512 (564)
T KOG1174|consen 500 --QDPKSKRTLRGLR 512 (564)
T ss_pred --cCccchHHHHHHH
Confidence 4454 45555553
No 61
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.46 E-value=4.3e-11 Score=110.98 Aligned_cols=275 Identities=19% Similarity=0.177 Sum_probs=137.5
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHHHhhhcCCCCcchHhHHHHHHHHHccCChhHHHHHHHh
Q 010342 50 KVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAED 129 (512)
Q Consensus 50 ~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 129 (512)
.++-.+...|+.|+..||..+|.-|+..|+.+.|- ++..|... ....+...|+.++.+....++.+.+.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-----if~fm~~k-sLpv~e~vf~~lv~sh~~And~Enpk----- 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-----IFPFMEIK-SLPVREGVFRGLVASHKEANDAENPK----- 79 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-----chhhhhcc-cccccchhHHHHHhcccccccccCCC-----
Confidence 45666677777777777777777777777777663 23333332 45555666666666666666655443
Q ss_pred cCCCCCCCcchhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHhccCchhHHHHHHHHHHh-CCCCCc
Q 010342 130 MPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQ-FGYLPS 208 (512)
Q Consensus 130 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~ 208 (512)
.|...+|..|..+|...||... |+...+ -...+...+...|.......++..+.- .+..||
T Consensus 80 ------ep~aDtyt~Ll~ayr~hGDli~----fe~veq--------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpd 141 (1088)
T KOG4318|consen 80 ------EPLADTYTNLLKAYRIHGDLIL----FEVVEQ--------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPD 141 (1088)
T ss_pred ------CCchhHHHHHHHHHHhccchHH----HHHHHH--------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchh
Confidence 2556666666666666666654 222221 112233334444444444444433221 122333
Q ss_pred hhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChhhHHHHHHHHHhcCCCCChhhHHHHHHH
Q 010342 209 EHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVING 288 (512)
Q Consensus 209 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 288 (512)
..+ .+....-.|-++.+.+++..+....... .+..+++-+.... .-..+++.......-.|++.+|..++.+
T Consensus 142 a~n---~illlv~eglwaqllkll~~~Pvsa~~~---p~~vfLrqnv~~n--tpvekLl~~cksl~e~~~s~~l~a~l~~ 213 (1088)
T KOG4318|consen 142 AEN---AILLLVLEGLWAQLLKLLAKVPVSAWNA---PFQVFLRQNVVDN--TPVEKLLNMCKSLVEAPTSETLHAVLKR 213 (1088)
T ss_pred HHH---HHHHHHHHHHHHHHHHHHhhCCcccccc---hHHHHHHHhccCC--chHHHHHHHHHHhhcCCChHHHHHHHHH
Confidence 322 2223334455666666554443211111 1111122222111 1122222222211114566666666666
Q ss_pred HHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHccCC
Q 010342 289 FCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRR 366 (512)
Q Consensus 289 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 366 (512)
-.-.|+.+.|..++.+|.+.+. +-+..-|-.++-+ .++...+..++ +.|...|+.|+..|+...+-.+...|.
T Consensus 214 alaag~~d~Ak~ll~emke~gf-pir~HyFwpLl~g---~~~~q~~e~vl-rgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 214 ALAAGDVDGAKNLLYEMKEKGF-PIRAHYFWPLLLG---INAAQVFEFVL-RGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred HHhcCchhhHHHHHHHHHHcCC-Ccccccchhhhhc---CccchHHHHHH-HHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 6666777777777777766665 4444444444333 44444444444 335666677776666666655555333
No 62
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.46 E-value=1e-08 Score=92.51 Aligned_cols=434 Identities=13% Similarity=0.078 Sum_probs=256.4
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHHHhhhcCCCCcchHhHHHH
Q 010342 31 SYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANL 110 (512)
Q Consensus 31 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l 110 (512)
.|..++..| ..+++.+.+.+.+.+.+. .+-...|.....-.+...|+.++|.......++ +-.-+...|..+
T Consensus 10 lF~~~lk~y-E~kQYkkgLK~~~~iL~k-~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr------~d~~S~vCwHv~ 81 (700)
T KOG1156|consen 10 LFRRALKCY-ETKQYKKGLKLIKQILKK-FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLR------NDLKSHVCWHVL 81 (700)
T ss_pred HHHHHHHHH-HHHHHHhHHHHHHHHHHh-CCccchhHHhccchhhcccchHHHHHHHHHHhc------cCcccchhHHHH
Confidence 355555544 567788888888888773 333555665555556667788888665544433 222344567777
Q ss_pred HHHHHccCChhHHHHHHHhcCCCCCCCcchhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHhccCch
Q 010342 111 VDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGC 190 (512)
Q Consensus 111 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~ 190 (512)
.-.+....++++|++.|......+. .+...+.-+.-.-.+.++++........+.+..+. ....|..+..++.-.|+.
T Consensus 82 gl~~R~dK~Y~eaiKcy~nAl~~~~-dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~-~ra~w~~~Avs~~L~g~y 159 (700)
T KOG1156|consen 82 GLLQRSDKKYDEAIKCYRNALKIEK-DNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPS-QRASWIGFAVAQHLLGEY 159 (700)
T ss_pred HHHHhhhhhHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh-hHHHHHHHHHHHHHHHHH
Confidence 7777777888888888888776553 34455555555556677887777777777665222 445777888888888899
Q ss_pred hHHHHHHHHHHhCC-CCCchhhHHHHH------HHHhccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChhhH
Q 010342 191 MRAYQLLEEGIQFG-YLPSEHTYKVLV------EGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTEL 263 (512)
Q Consensus 191 ~~a~~~~~~~~~~~-~~~~~~~~~~l~------~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 263 (512)
..|..++++..+.. -.|+...+.-.. ....+.|.++.|.+.+..... ........-..-...+.+.+++++|
T Consensus 160 ~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~-~i~Dkla~~e~ka~l~~kl~~lEeA 238 (700)
T KOG1156|consen 160 KMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEK-QIVDKLAFEETKADLLMKLGQLEEA 238 (700)
T ss_pred HHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhh-HHHHHHHHhhhHHHHHHHHhhHHhH
Confidence 99988888887654 245554443332 234567777877777765542 2333333444556677788889999
Q ss_pred HHHHHHHHhcCCCCChhhHHHHH-HHHHhcCCHHHHH-HHHHHHhhCCCCCCcHHHHHHHHHHHhhcCCHHHHH-HHHHh
Q 010342 264 LNVLVFMLQTQCQPDVITLNTVI-NGFCKMGRIEEAL-KVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEAL-NLLYQ 340 (512)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~-~~~~~ 340 (512)
..+++.++... ||...|.... .++.+..+.-++. .+|....+.. |.......+--............ .++..
T Consensus 239 ~~~y~~Ll~rn--Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y---~r~e~p~Rlplsvl~~eel~~~vdkyL~~ 313 (700)
T KOG1156|consen 239 VKVYRRLLERN--PDNLDYYEGLEKALGKIKDMLEALKALYAILSEKY---PRHECPRRLPLSVLNGEELKEIVDKYLRP 313 (700)
T ss_pred HHHHHHHHhhC--chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcC---cccccchhccHHHhCcchhHHHHHHHHHH
Confidence 99998888774 4555554444 4443333333333 6666665432 22222111111122223333333 33333
Q ss_pred hcccCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHh----CC----------CCCChH--hHHHHHHHHHhcCCHHH
Q 010342 341 VMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLG----IG----------VVADST--TYAIVIDGLCESNQLDE 404 (512)
Q Consensus 341 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~----------~~~~~~--~~~~l~~~~~~~g~~~~ 404 (512)
.+ +.|+++ ++..+...|-.....+-..++.-.+.. .| -+|... ++-.++..|-+.|+++.
T Consensus 314 ~l-~Kg~p~---vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~ 389 (700)
T KOG1156|consen 314 LL-SKGVPS---VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEV 389 (700)
T ss_pred Hh-hcCCCc---hhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHH
Confidence 33 445444 333333333222221111122111111 11 134443 34456677778888888
Q ss_pred HHHHHHHhhcCCCCCC-HHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010342 405 AKRFWDDIVWPSNIHD-NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMR 483 (512)
Q Consensus 405 a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 483 (512)
|...++..+.+ .|+ ...|..-.+.+...|++++|...+++..+.+ .||...-..-..-..++++.++|.++.....
T Consensus 390 A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~skFT 466 (700)
T KOG1156|consen 390 ALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLSKFT 466 (700)
T ss_pred HHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHHhh
Confidence 88888888754 333 3355566677888888888888888887765 4465554456666677888888888888777
Q ss_pred HCCC
Q 010342 484 KNGL 487 (512)
Q Consensus 484 ~~~~ 487 (512)
+.|.
T Consensus 467 r~~~ 470 (700)
T KOG1156|consen 467 REGF 470 (700)
T ss_pred hccc
Confidence 6664
No 63
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.46 E-value=1.2e-11 Score=101.36 Aligned_cols=236 Identities=14% Similarity=0.053 Sum_probs=197.1
Q ss_pred cHHHHHHHHHccCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHH
Q 010342 246 ICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGL 325 (512)
Q Consensus 246 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 325 (512)
.-..+.++|.+.|.+.+|.+.+...++.. |-+.||..|-..|.+..+++.|+.++.+-.+.. +.++.....+...+
T Consensus 225 Wk~Q~gkCylrLgm~r~AekqlqssL~q~--~~~dTfllLskvY~ridQP~~AL~~~~~gld~f--P~~VT~l~g~ARi~ 300 (478)
T KOG1129|consen 225 WKQQMGKCYLRLGMPRRAEKQLQSSLTQF--PHPDTFLLLSKVYQRIDQPERALLVIGEGLDSF--PFDVTYLLGQARIH 300 (478)
T ss_pred HHHHHHHHHHHhcChhhhHHHHHHHhhcC--CchhHHHHHHHHHHHhccHHHHHHHHhhhhhcC--CchhhhhhhhHHHH
Confidence 34567789999999999999998888874 455688888999999999999999999988764 45555556677888
Q ss_pred hhcCCHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHH
Q 010342 326 LNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEA 405 (512)
Q Consensus 326 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 405 (512)
-..++.++|.++++..++.. +.++....++...|.-.++.+.|...|+++...|+ -++..|+.+.-+|...+++|-+
T Consensus 301 eam~~~~~a~~lYk~vlk~~--~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~-~speLf~NigLCC~yaqQ~D~~ 377 (478)
T KOG1129|consen 301 EAMEQQEDALQLYKLVLKLH--PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGA-QSPELFCNIGLCCLYAQQIDLV 377 (478)
T ss_pred HHHHhHHHHHHHHHHHHhcC--CccceeeeeeeeccccCCChHHHHHHHHHHHHhcC-CChHHHhhHHHHHHhhcchhhh
Confidence 88999999999999987665 55666777788888999999999999999999984 5888999999999999999999
Q ss_pred HHHHHHhhcCCCCCC--HHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010342 406 KRFWDDIVWPSNIHD--NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMR 483 (512)
Q Consensus 406 ~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 483 (512)
..-|++....--.|+ ..+|-.+.......||+..|.+.|+-....+ ..+...++.|.-.-.+.|++++|..+++...
T Consensus 378 L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~A~ 456 (478)
T KOG1129|consen 378 LPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNAAK 456 (478)
T ss_pred HHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHHhh
Confidence 999999875443343 3478888888889999999999999888775 3367889999999999999999999999987
Q ss_pred HCCCCCCh
Q 010342 484 KNGLNPDA 491 (512)
Q Consensus 484 ~~~~~p~~ 491 (512)
. +.|+.
T Consensus 457 s--~~P~m 462 (478)
T KOG1129|consen 457 S--VMPDM 462 (478)
T ss_pred h--hCccc
Confidence 6 56663
No 64
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.45 E-value=7.2e-11 Score=100.75 Aligned_cols=195 Identities=10% Similarity=0.043 Sum_probs=133.2
Q ss_pred HHHHHHccCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcC
Q 010342 250 YLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVG 329 (512)
Q Consensus 250 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 329 (512)
+...+...|++++|...++...+.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|
T Consensus 37 la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~~~~~~~~~g 113 (234)
T TIGR02521 37 LALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN--PNNGDVLNNYGTFLCQQG 113 (234)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHcc
Confidence 3334444444444444444443332 2245566667777777788888888888777654 445566777777778888
Q ss_pred CHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHH
Q 010342 330 RIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFW 409 (512)
Q Consensus 330 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 409 (512)
++++|.+.+.+.+.....+.....+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...+
T Consensus 114 ~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~ 192 (234)
T TIGR02521 114 KYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKDARAYL 192 (234)
T ss_pred cHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHHHHHHH
Confidence 8888888887766432223334456667777888888888888888887753 345567777888888888888888888
Q ss_pred HHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 010342 410 DDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVD 449 (512)
Q Consensus 410 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 449 (512)
++.... .+.+...+..++..+...|+.++|..+.+.+..
T Consensus 193 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 193 ERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 888765 245566667777788888888888888777654
No 65
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.45 E-value=2.4e-08 Score=92.03 Aligned_cols=381 Identities=14% Similarity=0.017 Sum_probs=224.4
Q ss_pred CCCcchHhHHHHHHHHHccCChhHHHHHHHhcCCCCCCCcchhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCC-cchH
Q 010342 99 DLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPS-LVSY 177 (512)
Q Consensus 99 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~-~~~~ 177 (512)
....++..|..|.-++...|+++.+-+.|++....-. .....|..+...+...|.-..|..+++.-......|+ +..+
T Consensus 318 ~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~-~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~ 396 (799)
T KOG4162|consen 318 KFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSF-GEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVL 396 (799)
T ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh-hhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHH
Confidence 4456677777777777777888777777777554322 3345666677777777777777777766554432233 3333
Q ss_pred HHHHHHHhc-cCchhHHHHHHHHHHhC--CC--CCchhhHHHHHHHHhc----c-------CCHHHHHHHHHHHHhCCCC
Q 010342 178 NSIVHGLCK-HGGCMRAYQLLEEGIQF--GY--LPSEHTYKVLVEGLCG----E-------SDLEKARKVLQFMLSKKDV 241 (512)
Q Consensus 178 ~~l~~~~~~-~~~~~~a~~~~~~~~~~--~~--~~~~~~~~~l~~~~~~----~-------g~~~~a~~~~~~~~~~~~~ 241 (512)
...-..|.+ .+..++++++..+++.. +. ...+..|..+.-+|.. . ....++.+.+++..+.+ +
T Consensus 397 Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d-~ 475 (799)
T KOG4162|consen 397 LMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFD-P 475 (799)
T ss_pred HHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcC-C
Confidence 333334433 45566666665555541 10 1122233333222211 1 11234555555555433 3
Q ss_pred CCcccHHHHHHHHHccCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC----------
Q 010342 242 DRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFC---------- 311 (512)
Q Consensus 242 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---------- 311 (512)
.++.....+..-|...++.+.|.+..++..+.+...+...|..+.-.+.-.+++.+|+.+.+........
T Consensus 476 ~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~ 555 (799)
T KOG4162|consen 476 TDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIH 555 (799)
T ss_pred CCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhh
Confidence 3334444555556667777777777777777755666777777777777777777777777665543210
Q ss_pred --------CCcHHHHHHHHHHHhh-----------------------cCCHHHHHHHHHh-----------h-----ccc
Q 010342 312 --------APDAVTFTTIIFGLLN-----------------------VGRIQEALNLLYQ-----------V-----MPQ 344 (512)
Q Consensus 312 --------~~~~~~~~~l~~~~~~-----------------------~~~~~~a~~~~~~-----------~-----~~~ 344 (512)
.....|...++..+-. .++..++...... + ++.
T Consensus 556 i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~ 635 (799)
T KOG4162|consen 556 IELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPS 635 (799)
T ss_pred hhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCc
Confidence 0001111111111110 0011111110000 0 111
Q ss_pred CCCCCCh--------hhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCC
Q 010342 345 RGYSPGI--------VTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPS 416 (512)
Q Consensus 345 ~~~~~~~--------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 416 (512)
..+.|++ ..|......+.+.+..++|...+.+..... +.....|......+...|.+++|.+.|......+
T Consensus 636 s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ld 714 (799)
T KOG4162|consen 636 STVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVALALD 714 (799)
T ss_pred ccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcC
Confidence 1112221 123444556667777888887777776642 4556677777778888889999999998887665
Q ss_pred CCCCHHhHHHHHHHHHhcCCHHHHHH--HHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 010342 417 NIHDNYVYAAMIKGLCRSGKIHEAVH--FLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRK 484 (512)
Q Consensus 417 ~~~~~~~~~~l~~~~~~~g~~~~a~~--~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 484 (512)
+.++....++..++.+.|+..-|.. ++..+.+.+ +.+...|..+...+.+.|+.+.|.+-|....+
T Consensus 715 -P~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~q 782 (799)
T KOG4162|consen 715 -PDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDSKQAAECFQAALQ 782 (799)
T ss_pred -CCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccchHHHHHHHHHHHh
Confidence 5567788889999999988777777 888888876 34788899999999999999999888888765
No 66
>PRK12370 invasion protein regulator; Provisional
Probab=99.45 E-value=2e-10 Score=109.65 Aligned_cols=251 Identities=9% Similarity=-0.011 Sum_probs=171.5
Q ss_pred CHHHHHHHHHHHHhCCCCCCcccHHHHHHHHH---------ccCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCC
Q 010342 224 DLEKARKVLQFMLSKKDVDRTRICNIYLRALC---------LIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGR 294 (512)
Q Consensus 224 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~---------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 294 (512)
++++|...|++..+. .+.....+..+..++. ..++.++|...+++..+..+. +...+..+...+...|+
T Consensus 276 ~~~~A~~~~~~Al~l-dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~-~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 276 SLQQALKLLTQCVNM-SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHN-NPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHHhc-CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHccC
Confidence 356677777777643 2223334444433332 224467888888888877644 67778888888889999
Q ss_pred HHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHccCCHHHHHHHH
Q 010342 295 IEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVF 374 (512)
Q Consensus 295 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 374 (512)
+++|...|++..+.. +.+...+..+...+...|++++|...+++.+...+.. ...+..++..+...|++++|...+
T Consensus 354 ~~~A~~~~~~Al~l~--P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~--~~~~~~~~~~~~~~g~~eeA~~~~ 429 (553)
T PRK12370 354 YIVGSLLFKQANLLS--PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTR--AAAGITKLWITYYHTGIDDAIRLG 429 (553)
T ss_pred HHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC--hhhHHHHHHHHHhccCHHHHHHHH
Confidence 999999999998876 5677788888999999999999999999977554222 223333444566789999999999
Q ss_pred HHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCC
Q 010342 375 NCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDS-GVT 453 (512)
Q Consensus 375 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~ 453 (512)
+++.+...+.++..+..+..++...|+.++|...++++.... +.+....+.+...|...| ++|...++.+.+. .-.
T Consensus 430 ~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~ 506 (553)
T PRK12370 430 DELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE-ITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRI 506 (553)
T ss_pred HHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc-chhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHh
Confidence 998875423345567778888999999999999999876442 334445566666777777 4788877777653 123
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 010342 454 PNIVCYNVVIDGACKLSMKREAYQILREMRKNG 486 (512)
Q Consensus 454 p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 486 (512)
|....+ +...+.-.|+.+.+..+ +++.+.|
T Consensus 507 ~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 507 DNNPGL--LPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred hcCchH--HHHHHHHHhhhHHHHHH-HHhhccc
Confidence 333333 33444446777666555 7776643
No 67
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.44 E-value=1.1e-08 Score=91.25 Aligned_cols=119 Identities=18% Similarity=0.171 Sum_probs=58.8
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHHHhhhcCCCCcchHhHHHHHHHHH
Q 010342 36 IHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLC 115 (512)
Q Consensus 36 ~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 115 (512)
++.+...|++++|+....++...+ +-|...+..=+-+..+.+.++.|..+...- + ....+...+ +=.+||
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~----~---~~~~~~~~~--fEKAYc 88 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKN----G---ALLVINSFF--FEKAYC 88 (652)
T ss_pred HHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhc----c---hhhhcchhh--HHHHHH
Confidence 344455666666666666666543 233444445455556666666665322111 0 001111110 233443
Q ss_pred --ccCChhHHHHHHHhcCCCCCCCcchhHHHHHHHHHhcCChhhHHHHHHHHHHc
Q 010342 116 --REGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKR 168 (512)
Q Consensus 116 --~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 168 (512)
+.+..++|+..++-... .+..+...-...+.+.|++++|..+|+.+.+.
T Consensus 89 ~Yrlnk~Dealk~~~~~~~----~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn 139 (652)
T KOG2376|consen 89 EYRLNKLDEALKTLKGLDR----LDDKLLELRAQVLYRLERYDEALDIYQHLAKN 139 (652)
T ss_pred HHHcccHHHHHHHHhcccc----cchHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 55666666666662222 12224444445566666777777777666554
No 68
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.43 E-value=1.1e-08 Score=92.31 Aligned_cols=423 Identities=14% Similarity=0.085 Sum_probs=265.4
Q ss_pred cccCcHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhhHH
Q 010342 5 CGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERAN 84 (512)
Q Consensus 5 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 84 (512)
...|+-++|......-.+.+++ +.+.|..+.-.+-...++++|+..|......+ +-|...|.-+--.-++.++++...
T Consensus 52 ~~lg~~~ea~~~vr~glr~d~~-S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~ 129 (700)
T KOG1156|consen 52 NCLGKKEEAYELVRLGLRNDLK-SHVCWHVLGLLQRSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYL 129 (700)
T ss_pred hcccchHHHHHHHHHHhccCcc-cchhHHHHHHHHhhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHH
Confidence 3568888888888887776555 67789988888888889999999999988864 345566777666667778877776
Q ss_pred HHHHHHHHHhhhcCCCCcchHhHHHHHHHHHccCChhHHHHHHHhcCCCC-CCCcchhHHHH------HHHHHhcCChhh
Q 010342 85 VLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGK-SVNEEFACGHM------IDSLCRSGRNHG 157 (512)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~l------~~~~~~~~~~~~ 157 (512)
..-.++++..+. ....|..+..++.-.|+...|..+++...+.. -.|+...+... .......|.++.
T Consensus 130 ~tr~~LLql~~~------~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ 203 (700)
T KOG1156|consen 130 ETRNQLLQLRPS------QRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQK 203 (700)
T ss_pred HHHHHHHHhhhh------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHH
Confidence 655555543222 24566777788888899999999988876654 23444444332 234556788888
Q ss_pred HHHHHHHHHHcCCCCCcchHHHHHHHHhccCchhHHHHHHHHHHhCCCCCchh-hHHHHHHHHhc-cCCHHHHHHHHHHH
Q 010342 158 ASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEH-TYKVLVEGLCG-ESDLEKARKVLQFM 235 (512)
Q Consensus 158 a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~-~g~~~~a~~~~~~~ 235 (512)
|++.+...... +.-....-.+-...+.+.++.++|..++..++... ||.. .|..+..++.+ .+..+....+|...
T Consensus 204 ale~L~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rn--Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~l 280 (700)
T KOG1156|consen 204 ALEHLLDNEKQ-IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERN--PDNLDYYEGLEKALGKIKDMLEALKALYAIL 280 (700)
T ss_pred HHHHHHhhhhH-HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhC--chhHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 88877665543 11122233345566778899999999999998753 5544 44444445433 33333334666666
Q ss_pred HhCCCCCCcccHHHHHHHHHccCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHH----HHHhhCCC-
Q 010342 236 LSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVL----NDMVAGKF- 310 (512)
Q Consensus 236 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~----~~~~~~~~- 310 (512)
.+. .+........-+.......-.+..-.++....+.|+++ ++..+...|-.....+-..++. ..+...+.
T Consensus 281 s~~-y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~---vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f 356 (700)
T KOG1156|consen 281 SEK-YPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPS---VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMF 356 (700)
T ss_pred hhc-CcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCc---hhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCC
Confidence 532 22222222222233333333445556777778888764 3444444443322222111221 11111110
Q ss_pred --------CCCcHHHHH--HHHHHHhhcCCHHHHHHHHHhhcccCCCCCC-hhhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 010342 311 --------CAPDAVTFT--TIIFGLLNVGRIQEALNLLYQVMPQRGYSPG-IVTYNAVLRGLFRLRRVEEAKEVFNCMLG 379 (512)
Q Consensus 311 --------~~~~~~~~~--~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 379 (512)
-+|....|. .++..+-..|+++.|..+++..+.. .|+ +..|..-.+.+...|+++.|..++++..+
T Consensus 357 ~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH---TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~e 433 (700)
T KOG1156|consen 357 NFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH---TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQE 433 (700)
T ss_pred CcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc---CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Confidence 145554444 5677788999999999999886533 444 34455556888999999999999999998
Q ss_pred CCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHH--------hHHHH--HHHHHhcCCHHHHHHHHHHHH
Q 010342 380 IGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNY--------VYAAM--IKGLCRSGKIHEAVHFLYELV 448 (512)
Q Consensus 380 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--------~~~~l--~~~~~~~g~~~~a~~~~~~~~ 448 (512)
.+ .+|...-..-..-..+.++.++|.++.....+.|. +.. +|-.+ ..+|.++|++..|.+-|..+.
T Consensus 434 lD-~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~--~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~ 509 (700)
T KOG1156|consen 434 LD-TADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF--GAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIE 509 (700)
T ss_pred cc-chhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc--chhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHH
Confidence 75 55655544555666778999999999998877664 211 22222 346777777777766655443
No 69
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.43 E-value=2.2e-09 Score=98.99 Aligned_cols=289 Identities=13% Similarity=0.076 Sum_probs=170.6
Q ss_pred cccccCcHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHH-hc----
Q 010342 3 QLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVL-RT---- 77 (512)
Q Consensus 3 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~-~~---- 77 (512)
.+.+.|++++|++.++.-... +.............+.+.|+.++|..++..+.+.+ |+...|...+..+. ..
T Consensus 13 il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~~~~~ 89 (517)
T PF12569_consen 13 ILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQLQLS 89 (517)
T ss_pred HHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhhcccc
Confidence 456789999999999886665 44346677888999999999999999999999985 77766655554444 22
Q ss_pred -CChhhHHHHHHHHHHHhhhcCCCCcchHhHHHHHHHHHccCChh-HHHHHHHhcCCCCCCCcchhHHHHHHHHHhcCCh
Q 010342 78 -RDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVN-EVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRN 155 (512)
Q Consensus 78 -~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~-~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 155 (512)
.+.+...+++.++....|... ....+.-.+..-..+. .+..++..+..+|++ .+|+.+-..|......
T Consensus 90 ~~~~~~~~~~y~~l~~~yp~s~-------~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~ 159 (517)
T PF12569_consen 90 DEDVEKLLELYDELAEKYPRSD-------APRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKA 159 (517)
T ss_pred cccHHHHHHHHHHHHHhCcccc-------chhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHH
Confidence 234555555555544443321 1111111111112222 344455556666653 3555555556555555
Q ss_pred hhHHHHHHHHHHc----C----------CCCCcc--hHHHHHHHHhccCchhHHHHHHHHHHhCCCCCchhhHHHHHHHH
Q 010342 156 HGASRVVYVMRKR----G----------LTPSLV--SYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGL 219 (512)
Q Consensus 156 ~~a~~~~~~~~~~----g----------~~p~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 219 (512)
.-..+++...... + -.|+.. ++..+...|...|++++|++.+++.++.. +-.+..|..-.+.+
T Consensus 160 ~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht-Pt~~ely~~Karil 238 (517)
T PF12569_consen 160 AIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT-PTLVELYMTKARIL 238 (517)
T ss_pred HHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHH
Confidence 5555555554332 1 112222 33445566667788888888888777653 22356777777777
Q ss_pred hccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChhhHHHHHHHHHhcCCCCChhh--------HHHHHHHHHh
Q 010342 220 CGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVIT--------LNTVINGFCK 291 (512)
Q Consensus 220 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--------~~~l~~~~~~ 291 (512)
-+.|++.+|.+.++.....+ ..+..+=+..+..+.+.|+.++|..++....+.+..|-... ......+|.+
T Consensus 239 Kh~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r 317 (517)
T PF12569_consen 239 KHAGDLKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLR 317 (517)
T ss_pred HHCCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHH
Confidence 78888888888777776432 22223334445556667777777777766665543222211 1233556666
Q ss_pred cCCHHHHHHHHHHHh
Q 010342 292 MGRIEEALKVLNDMV 306 (512)
Q Consensus 292 ~~~~~~a~~~~~~~~ 306 (512)
.|++..|++.|..+.
T Consensus 318 ~~~~~~ALk~~~~v~ 332 (517)
T PF12569_consen 318 QGDYGLALKRFHAVL 332 (517)
T ss_pred HhhHHHHHHHHHHHH
Confidence 676666666555444
No 70
>PRK12370 invasion protein regulator; Provisional
Probab=99.40 E-value=1.8e-10 Score=109.97 Aligned_cols=251 Identities=11% Similarity=0.029 Sum_probs=164.4
Q ss_pred CChhhHHHHHHHHHHcCCCCCcchHHHHHHHHh---------ccCchhHHHHHHHHHHhCCCCCchhhHHHHHHHHhccC
Q 010342 153 GRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLC---------KHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGES 223 (512)
Q Consensus 153 ~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~---------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 223 (512)
+++++|.+.|++..+..+. +...|..+..++. ..+++++|...++++.+.. +.+...+..+...+...|
T Consensus 275 ~~~~~A~~~~~~Al~ldP~-~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g 352 (553)
T PRK12370 275 YSLQQALKLLTQCVNMSPN-SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHS 352 (553)
T ss_pred HHHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcc
Confidence 4577888888887776322 3345555544333 2345788888888888764 446677777777888888
Q ss_pred CHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 010342 224 DLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303 (512)
Q Consensus 224 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 303 (512)
++++|...+++..+. .+.+...+..+...+...|++++|...++...+..+. +...+..++..+...|++++|...++
T Consensus 353 ~~~~A~~~~~~Al~l-~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~~~~~ 430 (553)
T PRK12370 353 EYIVGSLLFKQANLL-SPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGITKLWITYYHTGIDDAIRLGD 430 (553)
T ss_pred CHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHhccCHHHHHHHHH
Confidence 888888888888764 3445567777788888888888888888888877544 22233344445666788999999998
Q ss_pred HHhhCCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhhcccCCCCCC-hhhHHHHHHHHHccCCHHHHHHHHHHHHhC-C
Q 010342 304 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPG-IVTYNAVLRGLFRLRRVEEAKEVFNCMLGI-G 381 (512)
Q Consensus 304 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~ 381 (512)
+...... +.+...+..+..++...|+.++|...+.+.... .|+ ....+.+...|...| +.+...++.+.+. .
T Consensus 431 ~~l~~~~-p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~ 504 (553)
T PRK12370 431 ELRSQHL-QDNPILLSMQVMFLSLKGKHELARKLTKEISTQ---EITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQ 504 (553)
T ss_pred HHHHhcc-ccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc---cchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhh
Confidence 8876531 234555677777888899999999988775433 333 333445555666666 4777777776652 1
Q ss_pred CCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCC
Q 010342 382 VVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPS 416 (512)
Q Consensus 382 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 416 (512)
-.+....+ +-..|.-.|+-+.+... +++.+.+
T Consensus 505 ~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 505 RIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred HhhcCchH--HHHHHHHHhhhHHHHHH-HHhhccc
Confidence 12222222 33445556666666555 7776543
No 71
>PF13041 PPR_2: PPR repeat family
Probab=99.39 E-value=1.4e-12 Score=79.08 Aligned_cols=50 Identities=38% Similarity=0.691 Sum_probs=37.8
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHhhcc
Q 010342 454 PNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGN 503 (512)
Q Consensus 454 p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 503 (512)
||..+|++++.+|++.|++++|.++|++|.+.|+.||..||+.|+++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 67777777777777777777777777777777777777777777777764
No 72
>PF13041 PPR_2: PPR repeat family
Probab=99.39 E-value=1.2e-12 Score=79.42 Aligned_cols=50 Identities=46% Similarity=1.005 Sum_probs=48.3
Q ss_pred CChHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHh
Q 010342 27 PNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLR 76 (512)
Q Consensus 27 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~ 76 (512)
||..+||++|++|++.|++++|.++|++|.+.|++||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 79999999999999999999999999999999999999999999999864
No 73
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.39 E-value=2e-07 Score=84.29 Aligned_cols=452 Identities=11% Similarity=0.106 Sum_probs=285.2
Q ss_pred hHhHHHHHHHHHhcCChhHHHHHHHHHHhC-CCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHHHhhhcCCCCcchHhH
Q 010342 29 VVSYTTLIHGYCRTGEMDVAYKVFDEMRHC-GVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAF 107 (512)
Q Consensus 29 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 107 (512)
+..|..-++.+.++|+...-+..|++.+.. .+.-....|...+......+-++.+..++++.++-.| ..-
T Consensus 102 pRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P---------~~~ 172 (835)
T KOG2047|consen 102 PRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAP---------EAR 172 (835)
T ss_pred CHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCH---------HHH
Confidence 446778888888999999999999998764 2222445788888888888889899998888875433 234
Q ss_pred HHHHHHHHccCChhHHHHHHHhcCCCC------CCCcchhHHHHHHHHHhcCChhh---HHHHHHHHHHcCCCCCc--ch
Q 010342 108 ANLVDSLCREGYVNEVFRIAEDMPQGK------SVNEEFACGHMIDSLCRSGRNHG---ASRVVYVMRKRGLTPSL--VS 176 (512)
Q Consensus 108 ~~l~~~~~~~g~~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~---a~~~~~~~~~~g~~p~~--~~ 176 (512)
...+..++..+++++|-+.+..+.... .+.+...|.-+.....+..+.-. ...+++.+... -+|. ..
T Consensus 173 eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r--ftDq~g~L 250 (835)
T KOG2047|consen 173 EEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR--FTDQLGFL 250 (835)
T ss_pred HHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc--CcHHHHHH
Confidence 558889999999999999998876532 22344556656555555443322 33333333322 2332 36
Q ss_pred HHHHHHHHhccCchhHHHHHHHHHHhCCCCCchhhHHHHHHHHhc----------------cCC------HHHHHHHHHH
Q 010342 177 YNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCG----------------ESD------LEKARKVLQF 234 (512)
Q Consensus 177 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----------------~g~------~~~a~~~~~~ 234 (512)
|++|.+-|.+.|.+++|.++|++.+..- .+..-|..+.++|+. .|+ ++-...-|+.
T Consensus 251 w~SLAdYYIr~g~~ekarDvyeeai~~v--~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~ 328 (835)
T KOG2047|consen 251 WCSLADYYIRSGLFEKARDVYEEAIQTV--MTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFES 328 (835)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHhh--eehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHH
Confidence 8899999999999999999999887642 233333333333321 111 2223333444
Q ss_pred HHhCCC-----------CCCcccHHHHHHHHHccCChhhHHHHHHHHHhcC-CC----CChhhHHHHHHHHHhcCCHHHH
Q 010342 235 MLSKKD-----------VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQ-CQ----PDVITLNTVINGFCKMGRIEEA 298 (512)
Q Consensus 235 ~~~~~~-----------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~----~~~~~~~~l~~~~~~~~~~~~a 298 (512)
+..... +.+...|.. ..-...|+..+....+.+..+.- +. .-...|..+...|-..|+++.|
T Consensus 329 lm~rr~~~lNsVlLRQn~~nV~eW~k--RV~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~a 406 (835)
T KOG2047|consen 329 LMNRRPLLLNSVLLRQNPHNVEEWHK--RVKLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDA 406 (835)
T ss_pred HHhccchHHHHHHHhcCCccHHHHHh--hhhhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHH
Confidence 333211 111111111 11223455666666666665431 11 1124577888999999999999
Q ss_pred HHHHHHHhhCCCCCCc--HHHHHHHHHHHhhcCCHHHHHHHHHhhcccCC----------CCC------ChhhHHHHHHH
Q 010342 299 LKVLNDMVAGKFCAPD--AVTFTTIIFGLLNVGRIQEALNLLYQVMPQRG----------YSP------GIVTYNAVLRG 360 (512)
Q Consensus 299 ~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----------~~~------~~~~~~~l~~~ 360 (512)
..+|++..+......+ ..+|......-.+..+++.|++++++...... .++ +...|...+..
T Consensus 407 Rvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~Dl 486 (835)
T KOG2047|consen 407 RVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADL 486 (835)
T ss_pred HHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHH
Confidence 9999999876531111 34566666666788899999998877542110 011 23345555555
Q ss_pred HHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHH-hHHHHHHHHHhc---CC
Q 010342 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNY-VYAAMIKGLCRS---GK 436 (512)
Q Consensus 361 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~---g~ 436 (512)
--..|-++....+|+++.+..+. ++.+.......+..+.-++++.+++++-+..-..|+.. .|+..+.-+.+. ..
T Consensus 487 eEs~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~k 565 (835)
T KOG2047|consen 487 EESLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTK 565 (835)
T ss_pred HHHhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCC
Confidence 56678899999999999987643 33333333334556667899999999877654455543 677777666553 36
Q ss_pred HHHHHHHHHHHHHCCCCCChh--hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh--HHHHHHH
Q 010342 437 IHEAVHFLYELVDSGVTPNIV--CYNVVIDGACKLSMKREAYQILREMRKNGLNPDA--VTWRILD 498 (512)
Q Consensus 437 ~~~a~~~~~~~~~~~~~p~~~--~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~--~~~~~l~ 498 (512)
++.|..+|++.++ |.+|... .|-.....--+.|....|+.++++.... +++.. ..|+..|
T Consensus 566 lEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~-v~~a~~l~myni~I 629 (835)
T KOG2047|consen 566 LERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSA-VKEAQRLDMYNIYI 629 (835)
T ss_pred HHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc-CCHHHHHHHHHHHH
Confidence 8999999999999 5566432 2222233334568888999999997653 45543 3566655
No 74
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.38 E-value=5.7e-11 Score=97.56 Aligned_cols=234 Identities=14% Similarity=0.055 Sum_probs=196.5
Q ss_pred hhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChhhHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 010342 210 HTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGF 289 (512)
Q Consensus 210 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 289 (512)
.--+.+.++|.+.|.+.+|++.++.-.+ ..+-+.+|..+.+.|.+..++..|+.++.+-++.- +.++....-+.+.+
T Consensus 224 wWk~Q~gkCylrLgm~r~AekqlqssL~--q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~f-P~~VT~l~g~ARi~ 300 (478)
T KOG1129|consen 224 WWKQQMGKCYLRLGMPRRAEKQLQSSLT--QFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSF-PFDVTYLLGQARIH 300 (478)
T ss_pred HHHHHHHHHHHHhcChhhhHHHHHHHhh--cCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcC-CchhhhhhhhHHHH
Confidence 3346788999999999999999998875 44566789999999999999999999999988764 33555556677888
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHccCCHHH
Q 010342 290 CKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEE 369 (512)
Q Consensus 290 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 369 (512)
...++.++|.++++...+.. +.++....++...|.-.++++-|+..++++++ .| .-++..|+.+.-+|.-.++++-
T Consensus 301 eam~~~~~a~~lYk~vlk~~--~~nvEaiAcia~~yfY~~~PE~AlryYRRiLq-mG-~~speLf~NigLCC~yaqQ~D~ 376 (478)
T KOG1129|consen 301 EAMEQQEDALQLYKLVLKLH--PINVEAIACIAVGYFYDNNPEMALRYYRRILQ-MG-AQSPELFCNIGLCCLYAQQIDL 376 (478)
T ss_pred HHHHhHHHHHHHHHHHHhcC--CccceeeeeeeeccccCCChHHHHHHHHHHHH-hc-CCChHHHhhHHHHHHhhcchhh
Confidence 88899999999999999876 67888888888999999999999999999774 44 3466789999999999999999
Q ss_pred HHHHHHHHHhCCCCCCh--HhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 010342 370 AKEVFNCMLGIGVVADS--TTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYEL 447 (512)
Q Consensus 370 a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 447 (512)
++.-|.+.+..--.|+. .+|-.+.......|++..|.+.|+-.+..+ ..+...++.|.-.-.+.|++++|..++...
T Consensus 377 ~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~A 455 (478)
T KOG1129|consen 377 VLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNAA 455 (478)
T ss_pred hHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHHh
Confidence 99999998875444443 467778888888999999999999998765 667789999999999999999999999988
Q ss_pred HHCC
Q 010342 448 VDSG 451 (512)
Q Consensus 448 ~~~~ 451 (512)
.+..
T Consensus 456 ~s~~ 459 (478)
T KOG1129|consen 456 KSVM 459 (478)
T ss_pred hhhC
Confidence 7753
No 75
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.37 E-value=1.3e-07 Score=80.86 Aligned_cols=291 Identities=11% Similarity=0.040 Sum_probs=213.8
Q ss_pred HhcCChhhHHHHHHHHHHcC-CCCCcchHHHHHHHHhccCchhHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCCHHHH
Q 010342 150 CRSGRNHGASRVVYVMRKRG-LTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKA 228 (512)
Q Consensus 150 ~~~~~~~~a~~~~~~~~~~g-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 228 (512)
+..++...+...+-.+.... ++-|+.....+.+.+...|+.++|...|++....+ +-+........-.+...|+.+..
T Consensus 207 ~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d-py~i~~MD~Ya~LL~~eg~~e~~ 285 (564)
T KOG1174|consen 207 MFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN-PDNVEAMDLYAVLLGQEGGCEQD 285 (564)
T ss_pred HHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC-hhhhhhHHHHHHHHHhccCHhhH
Confidence 34455555555554444332 44467788899999999999999999999887543 12222222233345678899999
Q ss_pred HHHHHHHHhCCCCCCcccHHHHHHHHHccCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 010342 229 RKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAG 308 (512)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 308 (512)
..+...+.... ......|..-+......+++..|+.+-++.++.... +...+-.-...+...|+.++|.-.|+.....
T Consensus 286 ~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r-~~~alilKG~lL~~~~R~~~A~IaFR~Aq~L 363 (564)
T KOG1174|consen 286 SALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPR-NHEALILKGRLLIALERHTQAVIAFRTAQML 363 (564)
T ss_pred HHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcc-cchHHHhccHHHHhccchHHHHHHHHHHHhc
Confidence 88888887543 223334444455566778899999998888876543 4555555567788889999999999998876
Q ss_pred CCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhhcccCCCCCChhhHHHHH-HHH-HccCCHHHHHHHHHHHHhCCCCCC-
Q 010342 309 KFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVL-RGL-FRLRRVEEAKEVFNCMLGIGVVAD- 385 (512)
Q Consensus 309 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~-~~~-~~~~~~~~a~~~~~~~~~~~~~~~- 385 (512)
. +.+...|..++.+|...|...+|.-+-...++.. +.+..+...+. ..| ....--++|.++++...+. .|+
T Consensus 364 a--p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~--~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--~P~Y 437 (564)
T KOG1174|consen 364 A--PYRLEIYRGLFHSYLAQKRFKEANALANWTIRLF--QNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--NPIY 437 (564)
T ss_pred c--hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHh--hcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc--CCcc
Confidence 5 5788999999999999999999998877766544 33444544442 222 2333457899999988875 344
Q ss_pred hHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 010342 386 STTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSG 451 (512)
Q Consensus 386 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 451 (512)
....+.+...+...|..+.+..++++.... .||....+.|.+.+...+.+.+|.+.|....+.+
T Consensus 438 ~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~d 501 (564)
T KOG1174|consen 438 TPAVNLIAELCQVEGPTKDIIKLLEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQD 501 (564)
T ss_pred HHHHHHHHHHHHhhCccchHHHHHHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 446778889999999999999999998753 7899999999999999999999999999988764
No 76
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.35 E-value=5.1e-09 Score=96.62 Aligned_cols=180 Identities=12% Similarity=0.075 Sum_probs=120.2
Q ss_pred HHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhC----C---------CCCCcHH--HHHHHHHHHhhc
Q 010342 264 LNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAG----K---------FCAPDAV--TFTTIIFGLLNV 328 (512)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~---------~~~~~~~--~~~~l~~~~~~~ 328 (512)
...+..+...|+++ +|+.+-..|......+-..+++...... + ..+|+.. ++.-+.+.|...
T Consensus 131 ~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~ 207 (517)
T PF12569_consen 131 DEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYL 207 (517)
T ss_pred HHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHh
Confidence 34445555555432 4555555555444444444454444321 0 1134443 345567778889
Q ss_pred CCHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHH
Q 010342 329 GRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRF 408 (512)
Q Consensus 329 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 408 (512)
|++++|++.+++.+... +..+..|..-.+.+-+.|++.+|...++...... ..|..+-+-.+..+.+.|++++|.++
T Consensus 208 g~~~~Al~~Id~aI~ht--Pt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~ 284 (517)
T PF12569_consen 208 GDYEKALEYIDKAIEHT--PTLVELYMTKARILKHAGDLKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKT 284 (517)
T ss_pred CCHHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHH
Confidence 99999999998877554 2335677777888889999999999999998875 45667777777888899999999999
Q ss_pred HHHhhcCCCCCCHH------h--HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 010342 409 WDDIVWPSNIHDNY------V--YAAMIKGLCRSGKIHEAVHFLYELVD 449 (512)
Q Consensus 409 ~~~~~~~~~~~~~~------~--~~~l~~~~~~~g~~~~a~~~~~~~~~ 449 (512)
+....+.+..|-.. + ......+|.+.|++..|++.|..+.+
T Consensus 285 ~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 285 ASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred HHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 99887666433221 1 24456788888998888877766554
No 77
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.35 E-value=1.2e-08 Score=93.92 Aligned_cols=410 Identities=13% Similarity=0.040 Sum_probs=227.7
Q ss_pred CCCChHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHHHhhhcCCCCcch
Q 010342 25 HVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNN 104 (512)
Q Consensus 25 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 104 (512)
+..|...|..|.-++...|++..+.+.|++.... .--....|..+-..+...|.-..|..+++.....-+ ..++.
T Consensus 319 ~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~-~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~----~ps~~ 393 (799)
T KOG4162|consen 319 FQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPF-SFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSE----QPSDI 393 (799)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh-hhhhHHHHHHHHHHHHHhccchHHHHHHHhhccccc----CCCcc
Confidence 4445666666666666666666666666665432 122344555555666666666666555544432211 11122
Q ss_pred HhHHHHHHHHH-ccCChhHHHHHHHhcCC--CC--CCCcchhHHHHHHHHHhc-----------CChhhHHHHHHHHHHc
Q 010342 105 AAFANLVDSLC-REGYVNEVFRIAEDMPQ--GK--SVNEEFACGHMIDSLCRS-----------GRNHGASRVVYVMRKR 168 (512)
Q Consensus 105 ~~~~~l~~~~~-~~g~~~~a~~~~~~~~~--~~--~~~~~~~~~~l~~~~~~~-----------~~~~~a~~~~~~~~~~ 168 (512)
..+-..-+.|. +.+.+++++.+..+... .+ .......|..+.-+|... ....++++.+++..+.
T Consensus 394 s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~ 473 (799)
T KOG4162|consen 394 SVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQF 473 (799)
T ss_pred hHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhc
Confidence 22323333333 34555555544444332 11 111222333333333211 1224456666666655
Q ss_pred CCCCCcchHHHHHHHHhccCchhHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCcccHH
Q 010342 169 GLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICN 248 (512)
Q Consensus 169 g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 248 (512)
+.. |+.+.-.+.--|+..++.+.|.+..++..+.+-..+...|..+.-.+...+++.+|+.+.+..... ...+.....
T Consensus 474 d~~-dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E-~~~N~~l~~ 551 (799)
T KOG4162|consen 474 DPT-DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEE-FGDNHVLMD 551 (799)
T ss_pred CCC-CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH-hhhhhhhch
Confidence 433 333333344445566677777777777766654566666666666666677777777776665432 111111112
Q ss_pred HHHHHHHccCChhhHHHHHHHHHhc---------------------C-------CCCChhhHHHHHHHHHhcC---CHHH
Q 010342 249 IYLRALCLIKNPTELLNVLVFMLQT---------------------Q-------CQPDVITLNTVINGFCKMG---RIEE 297 (512)
Q Consensus 249 ~l~~~~~~~~~~~~a~~~~~~~~~~---------------------~-------~~~~~~~~~~l~~~~~~~~---~~~~ 297 (512)
.-+..-...++.++++.....++.. | ..-...++..+.......+ ..+.
T Consensus 552 ~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~ 631 (799)
T KOG4162|consen 552 GKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSEL 631 (799)
T ss_pred hhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhccccc
Confidence 2222222344555444443332211 0 0111122222222111111 1111
Q ss_pred HHHHHHHHhhCCCCCCc------HHHHHHHHHHHhhcCCHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHccCCHHHHH
Q 010342 298 ALKVLNDMVAGKFCAPD------AVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAK 371 (512)
Q Consensus 298 a~~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 371 (512)
.+..+ .... .|+ ...|......+.+.+..++|...+.+.-. -.+.....|......+...|...+|.
T Consensus 632 ~Lp~s---~~~~--~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~--~~~l~~~~~~~~G~~~~~~~~~~EA~ 704 (799)
T KOG4162|consen 632 KLPSS---TVLP--GPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK--IDPLSASVYYLRGLLLEVKGQLEEAK 704 (799)
T ss_pred ccCcc---cccC--CCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh--cchhhHHHHHHhhHHHHHHHhhHHHH
Confidence 11111 1100 122 23455666778888899999877777432 22445566777777788899999999
Q ss_pred HHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHH--HHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 010342 372 EVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKR--FWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVD 449 (512)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 449 (512)
..|......+ |.++.+..++..++...|+..-|.. ++..+.+.+ +.+...|..+...+-+.|+.+.|.+.|+....
T Consensus 705 ~af~~Al~ld-P~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~q 782 (799)
T KOG4162|consen 705 EAFLVALALD-PDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDSKQAAECFQAALQ 782 (799)
T ss_pred HHHHHHHhcC-CCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccchHHHHHHHHHHHh
Confidence 9999888764 4566689999999999998887777 999999887 77888999999999999999999999998876
Q ss_pred C
Q 010342 450 S 450 (512)
Q Consensus 450 ~ 450 (512)
.
T Consensus 783 L 783 (799)
T KOG4162|consen 783 L 783 (799)
T ss_pred h
Confidence 5
No 78
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.30 E-value=7.5e-09 Score=81.26 Aligned_cols=209 Identities=14% Similarity=0.057 Sum_probs=165.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhhcccCCCCCChhhHHHHHHH
Q 010342 281 TLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360 (512)
Q Consensus 281 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 360 (512)
....+.-.|...|+...|..-+++..+.. +.+..++..+...|.+.|+.+.|.+.|++.+... +-+-...|.....
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~D--Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~--p~~GdVLNNYG~F 112 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHD--PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA--PNNGDVLNNYGAF 112 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC--CCccchhhhhhHH
Confidence 34556677888999999999999988876 6777888888889999999999999998877554 4455677888888
Q ss_pred HHccCCHHHHHHHHHHHHhCC-CCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHH
Q 010342 361 LFRLRRVEEAKEVFNCMLGIG-VVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHE 439 (512)
Q Consensus 361 ~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 439 (512)
+|..|.+++|...|++....- +.--..+|..+.-+..+.|+.+.|...+++.++.+ +....+.-.+.....+.|++-.
T Consensus 113 LC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~ 191 (250)
T COG3063 113 LCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAP 191 (250)
T ss_pred HHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchH
Confidence 888999999999998888742 22334578888888889999999999999988765 4555677888888899999999
Q ss_pred HHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHH
Q 010342 440 AVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497 (512)
Q Consensus 440 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l 497 (512)
|..+++.....+. ++..+.-..|+.-.+.|+.+.+.++=..+.+ .-|.+..+-.+
T Consensus 192 Ar~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r--~fP~s~e~q~f 246 (250)
T COG3063 192 ARLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQR--LFPYSEEYQTF 246 (250)
T ss_pred HHHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHH--hCCCcHHHHhH
Confidence 9999988877764 7888888888888889998888887777765 45666555443
No 79
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.29 E-value=3.1e-07 Score=82.32 Aligned_cols=444 Identities=14% Similarity=0.100 Sum_probs=252.2
Q ss_pred ccccccCcHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHH--HHHH--Hhc
Q 010342 2 DQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVL--VRGV--LRT 77 (512)
Q Consensus 2 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l--~~~~--~~~ 77 (512)
+.+...|++++|.+....++..+ +.+..++..=+.++.+.++|++|+.+.+.-.. ..+++.. =.+| .+.
T Consensus 20 n~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~------~~~~~~~~fEKAYc~Yrl 92 (652)
T KOG2376|consen 20 NRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGA------LLVINSFFFEKAYCEYRL 92 (652)
T ss_pred HHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcch------hhhcchhhHHHHHHHHHc
Confidence 45678899999999999999886 33677888888899999999999966554332 1112222 2344 468
Q ss_pred CChhhHHHHHHHHHHHhhhcCCCCcchHhHHHHHHHHHccCChhHHHHHHHhcCCCCCCC-cchhHHHHHHHHHhcCChh
Q 010342 78 RDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVN-EEFACGHMIDSLCRSGRNH 156 (512)
Q Consensus 78 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~ 156 (512)
+..++|...+.-+ + ..+..+...-.+.+-+.|++++|+.+|+.+.+.+... +...-..++.+- -
T Consensus 93 nk~Dealk~~~~~-~--------~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~----a-- 157 (652)
T KOG2376|consen 93 NKLDEALKTLKGL-D--------RLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVA----A-- 157 (652)
T ss_pred ccHHHHHHHHhcc-c--------ccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH----H--
Confidence 8899887765411 1 1122344445677889999999999999997765421 111111122111 0
Q ss_pred hHHHHHHHHHHcCCCCCcchHHHHH---HHHhccCchhHHHHHHHHHHhCC-------CCC------ch-hhHHHHHHHH
Q 010342 157 GASRVVYVMRKRGLTPSLVSYNSIV---HGLCKHGGCMRAYQLLEEGIQFG-------YLP------SE-HTYKVLVEGL 219 (512)
Q Consensus 157 ~a~~~~~~~~~~g~~p~~~~~~~l~---~~~~~~~~~~~a~~~~~~~~~~~-------~~~------~~-~~~~~l~~~~ 219 (512)
+... ..+......| ..+|..+. ..+...|++.+|+++++...+.+ -.- .. ..-..+..++
T Consensus 158 -~l~~-~~~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVl 234 (652)
T KOG2376|consen 158 -ALQV-QLLQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVL 234 (652)
T ss_pred -hhhH-HHHHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHH
Confidence 1111 1222222233 33444433 34567899999999999883221 011 11 1223445566
Q ss_pred hccCCHHHHHHHHHHHHhCCCCCCcc---cHHHHHHHHHccCChh-hHHHHHHHHHhc-----------CCCCChhhHHH
Q 010342 220 CGESDLEKARKVLQFMLSKKDVDRTR---ICNIYLRALCLIKNPT-ELLNVLVFMLQT-----------QCQPDVITLNT 284 (512)
Q Consensus 220 ~~~g~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~-~a~~~~~~~~~~-----------~~~~~~~~~~~ 284 (512)
-..|+-++|..++..+........+. +.|.++..-....-++ .++..++..... .-.-....=+.
T Consensus 235 Q~~Gqt~ea~~iy~~~i~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~ 314 (652)
T KOG2376|consen 235 QLQGQTAEASSIYVDIIKRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNA 314 (652)
T ss_pred HHhcchHHHHHHHHHHHHhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 78899999999999998765443321 1222222211111111 111111111100 00000111122
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHh--hcCCHHHHHHHHHhhcccCCCCCC-hhhHHHHHHHH
Q 010342 285 VINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLL--NVGRIQEALNLLYQVMPQRGYSPG-IVTYNAVLRGL 361 (512)
Q Consensus 285 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~ 361 (512)
++..|. +..+.+.++-...... .|.. .+..++..+. +...+..+..++....... +-. .......+...
T Consensus 315 lL~l~t--nk~~q~r~~~a~lp~~---~p~~-~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~--p~~s~~v~L~~aQl~ 386 (652)
T KOG2376|consen 315 LLALFT--NKMDQVRELSASLPGM---SPES-LFPILLQEATKVREKKHKKAIELLLQFADGH--PEKSKVVLLLRAQLK 386 (652)
T ss_pred HHHHHh--hhHHHHHHHHHhCCcc---CchH-HHHHHHHHHHHHHHHHHhhhHHHHHHHhccC--CchhHHHHHHHHHHH
Confidence 222222 3444454444443321 2333 3333333332 2235777888777643222 222 34455566777
Q ss_pred HccCCHHHHHHHHH--------HHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcC--CCCCCHH----hHHHH
Q 010342 362 FRLRRVEEAKEVFN--------CMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWP--SNIHDNY----VYAAM 427 (512)
Q Consensus 362 ~~~~~~~~a~~~~~--------~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~----~~~~l 427 (512)
...|+++.|.+++. .+.+.+. .+.+...+...+.+.++-+.|..++.+.+.. .-.+... ++.-+
T Consensus 387 is~gn~~~A~~il~~~~~~~~ss~~~~~~--~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~a 464 (652)
T KOG2376|consen 387 ISQGNPEVALEILSLFLESWKSSILEAKH--LPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREA 464 (652)
T ss_pred HhcCCHHHHHHHHHHHhhhhhhhhhhhcc--ChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHH
Confidence 88999999999998 5555443 3445666777788888777777777666421 0011112 33344
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 010342 428 IKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREM 482 (512)
Q Consensus 428 ~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m 482 (512)
+..-.+.|+.++|...++++.+.+ ++|..+...++.+|++. +++.|..+-+.+
T Consensus 465 a~f~lr~G~~~ea~s~leel~k~n-~~d~~~l~~lV~a~~~~-d~eka~~l~k~L 517 (652)
T KOG2376|consen 465 AEFKLRHGNEEEASSLLEELVKFN-PNDTDLLVQLVTAYARL-DPEKAESLSKKL 517 (652)
T ss_pred hHHHHhcCchHHHHHHHHHHHHhC-CchHHHHHHHHHHHHhc-CHHHHHHHhhcC
Confidence 444456799999999999999875 66888999999999865 577777776654
No 80
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.28 E-value=7.5e-09 Score=81.25 Aligned_cols=195 Identities=11% Similarity=0.010 Sum_probs=142.2
Q ss_pred HHHHHccCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCC
Q 010342 251 LRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGR 330 (512)
Q Consensus 251 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 330 (512)
...|...|++..|..-+++.++..+. +..++..+...|.+.|..+.|.+-|++..... +.+....|.....++..|+
T Consensus 42 al~YL~~gd~~~A~~nlekAL~~DPs-~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~--p~~GdVLNNYG~FLC~qg~ 118 (250)
T COG3063 42 ALGYLQQGDYAQAKKNLEKALEHDPS-YYLAHLVRAHYYQKLGENDLADESYRKALSLA--PNNGDVLNNYGAFLCAQGR 118 (250)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC--CCccchhhhhhHHHHhCCC
Confidence 33444445555555555555444322 56677778888888888888888888888765 5667777777777888888
Q ss_pred HHHHHHHHHhhcccCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHH
Q 010342 331 IQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWD 410 (512)
Q Consensus 331 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 410 (512)
+++|...|.+.+......--..+|..+.-+..+.|+++.|...|++..+.. +..+.+...+.....+.|++-.|..+++
T Consensus 119 ~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~Ar~~~~ 197 (250)
T COG3063 119 PEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAPARLYLE 197 (250)
T ss_pred hHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchHHHHHHH
Confidence 888888888877665555556678888877888888888888888888764 4455667777788888888888888888
Q ss_pred HhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 010342 411 DIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDS 450 (512)
Q Consensus 411 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 450 (512)
.....+ .++..++...|+.--..|+.+.+.+.=.++.+.
T Consensus 198 ~~~~~~-~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~ 236 (250)
T COG3063 198 RYQQRG-GAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL 236 (250)
T ss_pred HHHhcc-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 887666 477777777777777788887777766666554
No 81
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.27 E-value=1.3e-08 Score=83.00 Aligned_cols=318 Identities=14% Similarity=0.066 Sum_probs=184.3
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHHHhhhcCCCCcchHhHHH-
Q 010342 31 SYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFAN- 109 (512)
Q Consensus 31 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~- 109 (512)
-+.+.+..+.+..+++.|++++..-.++. +.+...++.+..+|....++..|-..++++-...|.. .-|..
T Consensus 12 eftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~-------~qYrlY 83 (459)
T KOG4340|consen 12 EFTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPEL-------EQYRLY 83 (459)
T ss_pred chHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHH-------HHHHHH
Confidence 35666667777778888888887777653 2255667777778888888888877776665433332 22221
Q ss_pred HHHHHHccCChhHHHHHHHhcCCCCCCCcchhHHHHH--HHHHhcCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHhcc
Q 010342 110 LVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMI--DSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKH 187 (512)
Q Consensus 110 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~ 187 (512)
-.+.+-+.+.+..|+++...|.+.. ....-..-+ ......+++..+..+++.....| +..+.+.......+.
T Consensus 84 ~AQSLY~A~i~ADALrV~~~~~D~~---~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllyke 157 (459)
T KOG4340|consen 84 QAQSLYKACIYADALRVAFLLLDNP---ALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKE 157 (459)
T ss_pred HHHHHHHhcccHHHHHHHHHhcCCH---HHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeecc
Confidence 2455667788888888888776631 111111111 22345678888888887776432 445555555556678
Q ss_pred CchhHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCcccHH----HHHHHHHccCChhhH
Q 010342 188 GGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICN----IYLRALCLIKNPTEL 263 (512)
Q Consensus 188 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~~~~~~a 263 (512)
|+++.|.+-|+...+.+.-.....|+..+ +..+.|+++.|.+...++.++|....+..-- ..+.+ ...|++..
T Consensus 158 gqyEaAvqkFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDv-rsvgNt~~- 234 (459)
T KOG4340|consen 158 GQYEAAVQKFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDV-RSVGNTLV- 234 (459)
T ss_pred ccHHHHHHHHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCch-hcccchHH-
Confidence 89999999998888765444455676554 4456788889998888888776554332100 00000 00011000
Q ss_pred HHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhhcc
Q 010342 264 LNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMP 343 (512)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 343 (512)
|-.++ -+..+|.-...+.+.|+++.|.+.+..|..+.....|+.|...+.-.-. .+++.+..+-+.-.+.
T Consensus 235 ------lh~Sa---l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~-~~~p~~g~~KLqFLL~ 304 (459)
T KOG4340|consen 235 ------LHQSA---LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNM-DARPTEGFEKLQFLLQ 304 (459)
T ss_pred ------HHHHH---HHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhcc-cCCccccHHHHHHHHh
Confidence 00000 1223455555667777888888777777665544556666654432221 2223333333333233
Q ss_pred cCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHH
Q 010342 344 QRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCM 377 (512)
Q Consensus 344 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 377 (512)
...+ -..||..++-.||+..-++.|-.++.+-
T Consensus 305 ~nPf--P~ETFANlLllyCKNeyf~lAADvLAEn 336 (459)
T KOG4340|consen 305 QNPF--PPETFANLLLLYCKNEYFDLAADVLAEN 336 (459)
T ss_pred cCCC--ChHHHHHHHHHHhhhHHHhHHHHHHhhC
Confidence 3322 2347777777777777777777766543
No 82
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.25 E-value=2.7e-08 Score=90.79 Aligned_cols=204 Identities=16% Similarity=0.102 Sum_probs=107.9
Q ss_pred HHHHHHHccCChhhHHHHHHHHHhc-----CC-CC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHH
Q 010342 249 IYLRALCLIKNPTELLNVLVFMLQT-----QC-QP-DVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTI 321 (512)
Q Consensus 249 ~l~~~~~~~~~~~~a~~~~~~~~~~-----~~-~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 321 (512)
.+...|...+++++|..+|..+... |. .| -..+++.|..+|.+.|++++|...++...+-
T Consensus 246 ~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I------------- 312 (508)
T KOG1840|consen 246 ILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEI------------- 312 (508)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHH-------------
Confidence 3444555555555555555554432 11 11 2335566666788888887777777655421
Q ss_pred HHHHhhcCCHHHHHHHHHhhcccCCCCCCh-hhHHHHHHHHHccCCHHHHHHHHHHHHhC---CCCC----ChHhHHHHH
Q 010342 322 IFGLLNVGRIQEALNLLYQVMPQRGYSPGI-VTYNAVLRGLFRLRRVEEAKEVFNCMLGI---GVVA----DSTTYAIVI 393 (512)
Q Consensus 322 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~----~~~~~~~l~ 393 (512)
+.+.+ ....|.. ..++.+...|...++++.|..+++...+. -..+ -..+++.|.
T Consensus 313 ----------------~~~~~--~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~ 374 (508)
T KOG1840|consen 313 ----------------YEKLL--GASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLA 374 (508)
T ss_pred ----------------HHHhh--ccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHH
Confidence 11100 0001111 12233444445555555555555444331 0111 134567777
Q ss_pred HHHHhcCCHHHHHHHHHHhhcC----CC---CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHH----HCCC-CC-ChhhHH
Q 010342 394 DGLCESNQLDEAKRFWDDIVWP----SN---IHDNYVYAAMIKGLCRSGKIHEAVHFLYELV----DSGV-TP-NIVCYN 460 (512)
Q Consensus 394 ~~~~~~g~~~~a~~~~~~~~~~----~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~----~~~~-~p-~~~~~~ 460 (512)
..|...|++++|.+++++++.. +. .-....++.|...|.+.+++.+|.++|.+.. ..|+ .| ...+|.
T Consensus 375 ~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~ 454 (508)
T KOG1840|consen 375 ELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYL 454 (508)
T ss_pred HHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHH
Confidence 7777777777777777766521 11 1123356667777777777777776665533 2222 12 235567
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHH
Q 010342 461 VVIDGACKLSMKREAYQILREMR 483 (512)
Q Consensus 461 ~l~~~~~~~g~~~~a~~~~~~m~ 483 (512)
.|...|.+.|+++.|.++.+...
T Consensus 455 nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 455 NLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHHHHHcccHHHHHHHHHHHH
Confidence 77777777888887777766654
No 83
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.23 E-value=2.4e-06 Score=81.67 Aligned_cols=445 Identities=12% Similarity=0.110 Sum_probs=240.3
Q ss_pred cccCcHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHhC-----------CCCCChhhHHHHHHH
Q 010342 5 CGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHC-----------GVLPNSLTYSVLVRG 73 (512)
Q Consensus 5 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-----------~~~~~~~~~~~l~~~ 73 (512)
...-.++++.+.+..|...+++.|....--+..-|...=-.+...++|+..+.. ++.-|+......|.+
T Consensus 654 Fg~lsve~s~eclkaml~~NirqNlQi~VQvatky~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqA 733 (1666)
T KOG0985|consen 654 FGSLSVEDSLECLKAMLSANIRQNLQIVVQVATKYHEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQA 733 (1666)
T ss_pred HHhcCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHH
Confidence 344567888889999998888888777777777777666667778888876442 245677777888999
Q ss_pred HHhcCChhhHHHHHHH-----------HHHHhhhcCCCCc----chHhHHH-HHHHHHccCChhHHHHHH-HhcCCCCCC
Q 010342 74 VLRTRDVERANVLMFK-----------LWERMKEEEDLSV----NNAAFAN-LVDSLCREGYVNEVFRIA-EDMPQGKSV 136 (512)
Q Consensus 74 ~~~~~~~~~a~~~~~~-----------~~~~~~~~~~~~~----~~~~~~~-l~~~~~~~g~~~~a~~~~-~~~~~~~~~ 136 (512)
.++.|++.+.+++.++ +++..+-.+.... +...|-. |+-.+-+. +..+-+++| +++-... .
T Consensus 734 A~kt~QikEvERicresn~YdpErvKNfLkeAkL~DqlPLiiVCDRf~fVhdlvlYLyrn-n~~kyIE~yVQkvNps~-~ 811 (1666)
T KOG0985|consen 734 ACKTGQIKEVERICRESNCYDPERVKNFLKEAKLTDQLPLIIVCDRFDFVHDLVLYLYRN-NLQKYIEIYVQKVNPSR-T 811 (1666)
T ss_pred HHhhccHHHHHHHHhccccCCHHHHHHHHHhccccccCceEEEecccccHHHHHHHHHHh-hHHHHHHHHHhhcCCcc-c
Confidence 9999998888765422 1111111111100 0011111 22112222 222222222 1111110 0
Q ss_pred C-----------cc-hhH------------HHHHHHHHhcCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHhccCch-h
Q 010342 137 N-----------EE-FAC------------GHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGC-M 191 (512)
Q Consensus 137 ~-----------~~-~~~------------~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~-~ 191 (512)
| +. ..- .-|+.-..+.++..--...++...+.|.. +..++|.|.+.|...++- +
T Consensus 812 p~VvG~LLD~dC~E~~ik~Li~~v~gq~~~deLv~EvEkRNRLklLlp~LE~~i~eG~~-d~a~hnAlaKIyIDSNNnPE 890 (1666)
T KOG0985|consen 812 PQVVGALLDVDCSEDFIKNLILSVRGQFPVDELVEEVEKRNRLKLLLPWLESLIQEGSQ-DPATHNALAKIYIDSNNNPE 890 (1666)
T ss_pred chhhhhhhcCCCcHHHHHHHHHHHhccCChHHHHHHHHhhhhHHHHHHHHHHHHhccCc-chHHHhhhhheeecCCCChH
Confidence 1 00 011 11233344555555566677777777776 888888888887765432 2
Q ss_pred HHHH---HHHHH------HhC-----------C--------CCCchhhHHHHHHHHhccCCH---HHH--------HHHH
Q 010342 192 RAYQ---LLEEG------IQF-----------G--------YLPSEHTYKVLVEGLCGESDL---EKA--------RKVL 232 (512)
Q Consensus 192 ~a~~---~~~~~------~~~-----------~--------~~~~~~~~~~l~~~~~~~g~~---~~a--------~~~~ 232 (512)
.-++ .|+.. .+. | +......|....+...+..|. .+. ..+.
T Consensus 891 ~fLkeN~yYDs~vVGkYCEKRDP~lA~vaYerGqcD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLi 970 (1666)
T KOG0985|consen 891 RFLKENPYYDSKVVGKYCEKRDPHLACVAYERGQCDLELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLI 970 (1666)
T ss_pred HhcccCCcchhhHHhhhhcccCCceEEEeecccCCcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHH
Confidence 1110 11100 000 0 000112233333333333332 122 2455
Q ss_pred HHHHhCCCC--CCcccHHHHHHHHHccCChhhHHHHHHHHHhcCC--CCChhhHH-------------------------
Q 010342 233 QFMLSKKDV--DRTRICNIYLRALCLIKNPTELLNVLVFMLQTQC--QPDVITLN------------------------- 283 (512)
Q Consensus 233 ~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~------------------------- 283 (512)
++..+...+ .++......++++...+-+.+.+++++++.-..- ..+...-+
T Consensus 971 DqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAikad~trVm~YI~rLdnyD 1050 (1666)
T KOG0985|consen 971 DQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKADRTRVMEYINRLDNYD 1050 (1666)
T ss_pred HHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhcChHHHHHHHHHhccCC
Confidence 555444333 2345566667777777777777777766542211 00000001
Q ss_pred --HHHHHHHhcCCHHHHHHHHHHHhhCC--------------------CCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhh
Q 010342 284 --TVINGFCKMGRIEEALKVLNDMVAGK--------------------FCAPDAVTFTTIIFGLLNVGRIQEALNLLYQV 341 (512)
Q Consensus 284 --~l~~~~~~~~~~~~a~~~~~~~~~~~--------------------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 341 (512)
.+...+...+-+++|..+|+...... .....+..|+.+..+-.+.|...+|++-|-+
T Consensus 1051 a~~ia~iai~~~LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v~dAieSyik- 1129 (1666)
T KOG0985|consen 1051 APDIAEIAIENQLYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQGGLVKDAIESYIK- 1129 (1666)
T ss_pred chhHHHHHhhhhHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhcCchHHHHHHHHh-
Confidence 11222334455666766666532100 0023456788888888889999999887754
Q ss_pred cccCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCH
Q 010342 342 MPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDN 421 (512)
Q Consensus 342 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 421 (512)
..|+..|..++....+.|.+++-.+.+....+..-.|.. -..|+-+|++.+++.+.++++. .||.
T Consensus 1130 ------adDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~i--d~eLi~AyAkt~rl~elE~fi~-------gpN~ 1194 (1666)
T KOG0985|consen 1130 ------ADDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYI--DSELIFAYAKTNRLTELEEFIA-------GPNV 1194 (1666)
T ss_pred ------cCCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccc--hHHHHHHHHHhchHHHHHHHhc-------CCCc
Confidence 237778999999999999999999988877776544444 4567888888888777666543 3455
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 010342 422 YVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQ 477 (512)
Q Consensus 422 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~ 477 (512)
.-...+.+-|...|.++.|.-++. +...|..|...+...|+++.|..
T Consensus 1195 A~i~~vGdrcf~~~~y~aAkl~y~---------~vSN~a~La~TLV~LgeyQ~AVD 1241 (1666)
T KOG0985|consen 1195 ANIQQVGDRCFEEKMYEAAKLLYS---------NVSNFAKLASTLVYLGEYQGAVD 1241 (1666)
T ss_pred hhHHHHhHHHhhhhhhHHHHHHHH---------HhhhHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555555544442 22234444455555555544443
No 84
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.23 E-value=1.6e-08 Score=88.32 Aligned_cols=204 Identities=14% Similarity=-0.003 Sum_probs=118.1
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhhcccCCCCCChhhHHHHHH
Q 010342 280 ITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLR 359 (512)
Q Consensus 280 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 359 (512)
..|..+...+...|+.++|...|++..+.. +.+...|..+...+...|++++|...|++.++.. +.+...+..+..
T Consensus 65 ~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~--P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~--P~~~~a~~~lg~ 140 (296)
T PRK11189 65 QLHYERGVLYDSLGLRALARNDFSQALALR--PDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELD--PTYNYAYLNRGI 140 (296)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHH
Confidence 345566666777777777777777777655 5566777777777777777777777777765332 223455666666
Q ss_pred HHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHH
Q 010342 360 GLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHE 439 (512)
Q Consensus 360 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 439 (512)
++...|++++|...++...+.. |+..........+...++.++|...+++..... .++...+ . ......|+..+
T Consensus 141 ~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~-~~~~~~~-~--~~~~~lg~~~~ 214 (296)
T PRK11189 141 ALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYEKL-DKEQWGW-N--IVEFYLGKISE 214 (296)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC-CccccHH-H--HHHHHccCCCH
Confidence 6777777777777777777643 332211111222344566777777776554322 2222111 1 22223444433
Q ss_pred HHHHHHHHHHC---CC--C-CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHH
Q 010342 440 AVHFLYELVDS---GV--T-PNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWR 495 (512)
Q Consensus 440 a~~~~~~~~~~---~~--~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~ 495 (512)
+ +.+..+.+. .+ . .....|..+...+.+.|++++|...|++....+ +||.+.++
T Consensus 215 ~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~-~~~~~e~~ 274 (296)
T PRK11189 215 E-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN-VYNFVEHR 274 (296)
T ss_pred H-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CchHHHHH
Confidence 3 233333321 11 1 123467777777788888888888888877643 34554444
No 85
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.22 E-value=1.2e-08 Score=93.05 Aligned_cols=166 Identities=12% Similarity=0.049 Sum_probs=88.5
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHH-----cCC-CCCcc-hHHHHHHHHhccCchhHHHHHHHHHHhC---CCCC---
Q 010342 141 ACGHMIDSLCRSGRNHGASRVVYVMRK-----RGL-TPSLV-SYNSIVHGLCKHGGCMRAYQLLEEGIQF---GYLP--- 207 (512)
Q Consensus 141 ~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~g~-~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~--- 207 (512)
+++.|...|.+.|++++|...++...+ .|. .|.+. .++.+...+...+++++|..+++...+. -+.+
T Consensus 285 ~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~ 364 (508)
T KOG1840|consen 285 TLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNV 364 (508)
T ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccch
Confidence 344444455555555555544443321 111 11221 3455566667777777777777765432 1111
Q ss_pred -chhhHHHHHHHHhccCCHHHHHHHHHHHHhCC----C---CCCcccHHHHHHHHHccCChhhHHHHHHHHHh----cCC
Q 010342 208 -SEHTYKVLVEGLCGESDLEKARKVLQFMLSKK----D---VDRTRICNIYLRALCLIKNPTELLNVLVFMLQ----TQC 275 (512)
Q Consensus 208 -~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~ 275 (512)
-..+++.|...|...|++++|.++++.+.... . ......++.+...|.+.+++.+|..+|.+... .|+
T Consensus 365 ~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~ 444 (508)
T KOG1840|consen 365 NLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGP 444 (508)
T ss_pred HHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCC
Confidence 23567788888888888888888887775432 1 11122445555555555555555555544322 121
Q ss_pred --CCChhhHHHHHHHHHhcCCHHHHHHHHHHHh
Q 010342 276 --QPDVITLNTVINGFCKMGRIEEALKVLNDMV 306 (512)
Q Consensus 276 --~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 306 (512)
+-...+|..|...|.+.|+++.|.++.+.+.
T Consensus 445 ~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 445 DHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred CCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 1123455566666666666666666655544
No 86
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.16 E-value=3.2e-09 Score=91.13 Aligned_cols=180 Identities=15% Similarity=0.173 Sum_probs=102.5
Q ss_pred CCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHccCCHHHHHH
Q 010342 293 GRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKE 372 (512)
Q Consensus 293 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 372 (512)
++.+.++.-+++.........+..........+...|++++|++++.+. .+.......+..|.+.++++.|.+
T Consensus 80 ~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~-------~~lE~~al~Vqi~L~~~R~dlA~k 152 (290)
T PF04733_consen 80 SDKESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG-------GSLELLALAVQILLKMNRPDLAEK 152 (290)
T ss_dssp TTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT-------TCHHHHHHHHHHHHHTT-HHHHHH
T ss_pred cchHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc-------CcccHHHHHHHHHHHcCCHHHHHH
Confidence 3444454444443333221223333333334556677777777655431 345555666777777777777777
Q ss_pred HHHHHHhCCCCCChHhHHHHHHHHHh----cCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010342 373 VFNCMLGIGVVADSTTYAIVIDGLCE----SNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELV 448 (512)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 448 (512)
.++.|.+.+ +..+...+..++.. .+.+.+|..+|+++.+. ..++..+.+.++.++...|++++|.+++.+..
T Consensus 153 ~l~~~~~~~---eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al 228 (290)
T PF04733_consen 153 ELKNMQQID---EDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEAL 228 (290)
T ss_dssp HHHHHHCCS---CCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHC
T ss_pred HHHHHHhcC---CcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 777777642 22333334443332 23577777777776654 35667777777777777777777777777776
Q ss_pred HCCCCCChhhHHHHHHHHHhcCCH-HHHHHHHHHHHH
Q 010342 449 DSGVTPNIVCYNVVIDGACKLSMK-REAYQILREMRK 484 (512)
Q Consensus 449 ~~~~~p~~~~~~~l~~~~~~~g~~-~~a~~~~~~m~~ 484 (512)
..+.. ++.++..++.+....|+. +.+.+++.++..
T Consensus 229 ~~~~~-~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~ 264 (290)
T PF04733_consen 229 EKDPN-DPDTLANLIVCSLHLGKPTEAAERYLSQLKQ 264 (290)
T ss_dssp CC-CC-HHHHHHHHHHHHHHTT-TCHHHHHHHHHCHH
T ss_pred HhccC-CHHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 55422 556666666666666766 556677777765
No 87
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.16 E-value=3.7e-07 Score=83.22 Aligned_cols=202 Identities=13% Similarity=0.102 Sum_probs=116.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhhcccCCCCCCh--hhHHHHH
Q 010342 281 TLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGI--VTYNAVL 358 (512)
Q Consensus 281 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~l~ 358 (512)
....+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...+.+.+......|+. ..|..+.
T Consensus 116 ~~~~~a~~~~~~G~~~~A~~~~~~al~~~--p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la 193 (355)
T cd05804 116 LLGMLAFGLEEAGQYDRAEEAARRALELN--PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLA 193 (355)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHH
Confidence 33445566777788888888888887765 4556667777777888888888888887765443222332 2344566
Q ss_pred HHHHccCCHHHHHHHHHHHHhCCC-CCChHhH-H--HHHHHHHhcCCHHHHHHH---HHHhhcC-CCCCCHHhHHHHHHH
Q 010342 359 RGLFRLRRVEEAKEVFNCMLGIGV-VADSTTY-A--IVIDGLCESNQLDEAKRF---WDDIVWP-SNIHDNYVYAAMIKG 430 (512)
Q Consensus 359 ~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~-~--~l~~~~~~~g~~~~a~~~---~~~~~~~-~~~~~~~~~~~l~~~ 430 (512)
..+...|++++|..++++...... .+..... + .++..+...|....+.+. ....... ..............+
T Consensus 194 ~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~ 273 (355)
T cd05804 194 LFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALA 273 (355)
T ss_pred HHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHH
Confidence 777788888888888888754321 1111111 1 223333334432222222 1111111 001111222356667
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCC------C--ChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 010342 431 LCRSGKIHEAVHFLYELVDSGVT------P--NIVCYNVVIDGACKLSMKREAYQILREMRK 484 (512)
Q Consensus 431 ~~~~g~~~~a~~~~~~~~~~~~~------p--~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 484 (512)
+...|+.++|...++.+...... . ..........++...|++++|.+.+.....
T Consensus 274 ~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~ 335 (355)
T cd05804 274 LAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRD 335 (355)
T ss_pred HhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 77888999999998887653211 0 122223334555688999999998888764
No 88
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.16 E-value=7.5e-08 Score=84.20 Aligned_cols=189 Identities=11% Similarity=-0.029 Sum_probs=96.1
Q ss_pred HHHHccCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCCH
Q 010342 252 RALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRI 331 (512)
Q Consensus 252 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 331 (512)
..+...|+.++|...|....+..+ .+...|+.+...+...|++++|...|++..+.. +.+..++..+..++...|++
T Consensus 72 ~~~~~~g~~~~A~~~~~~Al~l~P-~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~--P~~~~a~~~lg~~l~~~g~~ 148 (296)
T PRK11189 72 VLYDSLGLRALARNDFSQALALRP-DMADAYNYLGIYLTQAGNFDAAYEAFDSVLELD--PTYNYAYLNRGIALYYGGRY 148 (296)
T ss_pred HHHHHCCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCH
Confidence 333334444444444444433332 245566666666667777777777776666544 34455666666666666777
Q ss_pred HHHHHHHHhhcccCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHH
Q 010342 332 QEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDD 411 (512)
Q Consensus 332 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 411 (512)
++|.+.+++.+... |+..........+...++.++|...+.+..... .|+... ..+. ....|+...+ ..++.
T Consensus 149 ~eA~~~~~~al~~~---P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~-~~~~~~-~~~~--~~~lg~~~~~-~~~~~ 220 (296)
T PRK11189 149 ELAQDDLLAFYQDD---PNDPYRALWLYLAESKLDPKQAKENLKQRYEKL-DKEQWG-WNIV--EFYLGKISEE-TLMER 220 (296)
T ss_pred HHHHHHHHHHHHhC---CCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC-CccccH-HHHH--HHHccCCCHH-HHHHH
Confidence 77777666655332 222111111122334556677777765544321 222211 1222 2223444332 23333
Q ss_pred hhc---CCC---CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 010342 412 IVW---PSN---IHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSG 451 (512)
Q Consensus 412 ~~~---~~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 451 (512)
+.+ ... +.....|..+...+...|++++|...|++..+.+
T Consensus 221 ~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 221 LKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred HHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 321 110 1123467777777777777777777777777654
No 89
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.12 E-value=4.7e-06 Score=79.74 Aligned_cols=395 Identities=11% Similarity=0.089 Sum_probs=264.7
Q ss_pred HHHHHHHhCCCC--CChHhHHHHHHHHHhcCChhHHHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCChhhHHHHHHHH
Q 010342 15 KLFFDMKSRGHV--PNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCG--VLPNSLTYSVLVRGVLRTRDVERANVLMFKL 90 (512)
Q Consensus 15 ~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 90 (512)
++.++..+.+++ .|+........++...+-+.+..++++++.-.. +.-+...-+.++-...+ -+..+..+...++
T Consensus 968 qLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAik-ad~trVm~YI~rL 1046 (1666)
T KOG0985|consen 968 QLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIK-ADRTRVMEYINRL 1046 (1666)
T ss_pred HHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhh-cChHHHHHHHHHh
Confidence 344444444332 256667788889999999999999999987532 11122223333333333 2334443333222
Q ss_pred HHHhhhcCCCCcchHhHHHHHHHHHccCChhHHHHHHHhcCCCCCCCcchhHHHHHHHHHhcCChhhHHHHHHHHHHcCC
Q 010342 91 WERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGL 170 (512)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~ 170 (512)
..- -.|+ +.......+-+++|+.+|+.... +..+.+.|+. .-+..+.|.+.-+...
T Consensus 1047 ----dny--Da~~------ia~iai~~~LyEEAF~ifkkf~~-----n~~A~~VLie---~i~~ldRA~efAe~~n---- 1102 (1666)
T KOG0985|consen 1047 ----DNY--DAPD------IAEIAIENQLYEEAFAIFKKFDM-----NVSAIQVLIE---NIGSLDRAYEFAERCN---- 1102 (1666)
T ss_pred ----ccC--Cchh------HHHHHhhhhHHHHHHHHHHHhcc-----cHHHHHHHHH---HhhhHHHHHHHHHhhC----
Confidence 111 1222 67778888889999999988653 2334444443 3466677766655543
Q ss_pred CCCcchHHHHHHHHhccCchhHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCcccHHHH
Q 010342 171 TPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIY 250 (512)
Q Consensus 171 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 250 (512)
.+..|..+..+-.+.|...+|.+-|-+ ..|+..|..+++...+.|.+++-.+++....++...| ..=..+
T Consensus 1103 --~p~vWsqlakAQL~~~~v~dAieSyik------adDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~--~id~eL 1172 (1666)
T KOG0985|consen 1103 --EPAVWSQLAKAQLQGGLVKDAIESYIK------ADDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREP--YIDSEL 1172 (1666)
T ss_pred --ChHHHHHHHHHHHhcCchHHHHHHHHh------cCCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCc--cchHHH
Confidence 457899999999999999998887754 3567789999999999999999999998777654443 344678
Q ss_pred HHHHHccCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCC
Q 010342 251 LRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGR 330 (512)
Q Consensus 251 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 330 (512)
+-+|++.++..+...++. -|+......+.+-|...|.++.|.-+|.... -|..+...+...|+
T Consensus 1173 i~AyAkt~rl~elE~fi~-------gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vS----------N~a~La~TLV~Lge 1235 (1666)
T KOG0985|consen 1173 IFAYAKTNRLTELEEFIA-------GPNVANIQQVGDRCFEEKMYEAAKLLYSNVS----------NFAKLASTLVYLGE 1235 (1666)
T ss_pred HHHHHHhchHHHHHHHhc-------CCCchhHHHHhHHHhhhhhhHHHHHHHHHhh----------hHHHHHHHHHHHHH
Confidence 888999998887776653 5788888888999999999999988886543 47778888889999
Q ss_pred HHHHHHHHHhhcccCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHH
Q 010342 331 IQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWD 410 (512)
Q Consensus 331 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 410 (512)
+..|.+.-++ ..+..+|..+-.+|...+.+.-| +|...++.....-...++..|...|-+++...+++
T Consensus 1236 yQ~AVD~aRK-------Ans~ktWK~VcfaCvd~~EFrlA-----QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~E 1303 (1666)
T KOG0985|consen 1236 YQGAVDAARK-------ANSTKTWKEVCFACVDKEEFRLA-----QICGLNIIVHADELEELIEYYQDRGYFEELISLLE 1303 (1666)
T ss_pred HHHHHHHhhh-------ccchhHHHHHHHHHhchhhhhHH-----HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHH
Confidence 9999886655 23677999888888877766544 45555555566677889999999999999999998
Q ss_pred HhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCC------CChhhHHHHHHHHHhcCCHHHH
Q 010342 411 DIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDS-GVT------PNIVCYNVVIDGACKLSMKREA 475 (512)
Q Consensus 411 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~------p~~~~~~~l~~~~~~~g~~~~a 475 (512)
...-.. ......|+-|.-.|.+- ++++..+.++-+-.+ +++ -....|+-++-.|.+-..++.|
T Consensus 1304 a~LGLE-RAHMgmfTELaiLYsky-kp~km~EHl~LFwsRvNipKviRA~eqahlW~ElvfLY~~y~eyDNA 1373 (1666)
T KOG0985|consen 1304 AGLGLE-RAHMGMFTELAILYSKY-KPEKMMEHLKLFWSRVNIPKVIRAAEQAHLWSELVFLYDKYEEYDNA 1373 (1666)
T ss_pred hhhchh-HHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhhhhhHH
Confidence 775332 33455777777777654 344444433322211 110 0223466666666665555554
No 90
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.12 E-value=2.7e-07 Score=75.47 Aligned_cols=190 Identities=16% Similarity=0.140 Sum_probs=132.2
Q ss_pred ccccCcHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHH-HHHHHHhcCChhh
Q 010342 4 LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSV-LVRGVLRTRDVER 82 (512)
Q Consensus 4 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~-l~~~~~~~~~~~~ 82 (512)
+++..++++|++++....++.++ +....+.|..+|-...++..|-..++.+... .|...-|.. -...+.+.+.+..
T Consensus 20 lI~d~ry~DaI~~l~s~~Er~p~-~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY~A~i~AD 96 (459)
T KOG4340|consen 20 LIRDARYADAIQLLGSELERSPR-SRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLYKACIYAD 96 (459)
T ss_pred HHHHhhHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHHHhcccHH
Confidence 36677899999999998888444 7778899999999999999999999999875 355544433 2345667788888
Q ss_pred HHHHHHHHHHHhhhcCCCCcchHhHHHHHHHHHccCChhHHHHHHHhcCCCCCCCcchhHHHHHHHHHhcCChhhHHHHH
Q 010342 83 ANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVV 162 (512)
Q Consensus 83 a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 162 (512)
|.++...+.+ .+. ........-....-..+++..+..+.++....+ +..+.+...-...+.|+++.|.+-|
T Consensus 97 ALrV~~~~~D----~~~--L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaAvqkF 167 (459)
T KOG4340|consen 97 ALRVAFLLLD----NPA--LHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAAVQKF 167 (459)
T ss_pred HHHHHHHhcC----CHH--HHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHHHHHH
Confidence 8776544422 111 111111111223346788999999999887543 2333333444556889999999999
Q ss_pred HHHHHcCCCCCcchHHHHHHHHhccCchhHHHHHHHHHHhCCCC
Q 010342 163 YVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYL 206 (512)
Q Consensus 163 ~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 206 (512)
....+-|--.....|+..+. ..+.++++.|++...++++.|++
T Consensus 168 qaAlqvsGyqpllAYniALa-Hy~~~qyasALk~iSEIieRG~r 210 (459)
T KOG4340|consen 168 QAALQVSGYQPLLAYNLALA-HYSSRQYASALKHISEIIERGIR 210 (459)
T ss_pred HHHHhhcCCCchhHHHHHHH-HHhhhhHHHHHHHHHHHHHhhhh
Confidence 99887543335677876654 44678999999999999888754
No 91
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.12 E-value=1.3e-06 Score=77.65 Aligned_cols=219 Identities=12% Similarity=0.097 Sum_probs=100.9
Q ss_pred HHHHHHHHccCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHH-------
Q 010342 248 NIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTT------- 320 (512)
Q Consensus 248 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~------- 320 (512)
..+.....+..+++.+.+-+....+.. .+..-++....+|...|.+..+...-+...+.+ ......|+.
T Consensus 228 k~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~g--re~rad~klIak~~~r 303 (539)
T KOG0548|consen 228 KELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVG--RELRADYKLIAKALAR 303 (539)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHh--HHHHHHHHHHHHHHHH
Confidence 345555566666777777776666654 355555666666777777666666655555444 222222322
Q ss_pred HHHHHhhcCCHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCh-HhHHHHHHHHHhc
Q 010342 321 IIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADS-TTYAIVIDGLCES 399 (512)
Q Consensus 321 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~ 399 (512)
+..++.+.++++.++..|.+.+.... .|+.. .+....+++....+...-.+ |.. .-...=...+.+.
T Consensus 304 ~g~a~~k~~~~~~ai~~~~kaLte~R-t~~~l---------s~lk~~Ek~~k~~e~~a~~~--pe~A~e~r~kGne~Fk~ 371 (539)
T KOG0548|consen 304 LGNAYTKREDYEGAIKYYQKALTEHR-TPDLL---------SKLKEAEKALKEAERKAYIN--PEKAEEEREKGNEAFKK 371 (539)
T ss_pred hhhhhhhHHhHHHHHHHHHHHhhhhc-CHHHH---------HHHHHHHHHHHHHHHHHhhC--hhHHHHHHHHHHHHHhc
Confidence 23345556677777777776553321 22211 11122222222222222211 111 0111113334444
Q ss_pred CCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 010342 400 NQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQIL 479 (512)
Q Consensus 400 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 479 (512)
|++..|...|.++++.. +.|...|..-.-+|.+.|.+..|+.-.+..++.+ ++....|.-=..++....+|++|.+.|
T Consensus 372 gdy~~Av~~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~-p~~~kgy~RKg~al~~mk~ydkAleay 449 (539)
T KOG0548|consen 372 GDYPEAVKHYTEAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIELD-PNFIKAYLRKGAALRAMKEYDKALEAY 449 (539)
T ss_pred cCHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555554443 3444445555555555555555544444444432 112222333333333344444555554
Q ss_pred HHHHH
Q 010342 480 REMRK 484 (512)
Q Consensus 480 ~~m~~ 484 (512)
++.++
T Consensus 450 ~eale 454 (539)
T KOG0548|consen 450 QEALE 454 (539)
T ss_pred HHHHh
Confidence 44444
No 92
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.11 E-value=8.6e-07 Score=80.82 Aligned_cols=201 Identities=12% Similarity=0.009 Sum_probs=123.2
Q ss_pred hHhHHHHHHHHHhcCChhHHHHHHHHHHhCCC-CCChh-hHHHHHHHHHhcCChhhHHHHHHHHHHHhhhcCCCCcchHh
Q 010342 29 VVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV-LPNSL-TYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAA 106 (512)
Q Consensus 29 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 106 (512)
.-.|..+...+...|+.+.+...+.+..+... .++.. ........+...|++++|...+.++++..|.. ...
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~------~~a 79 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRD------LLA 79 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCc------HHH
Confidence 44566666777777778777776666654321 11221 12222334556788888888888777654432 122
Q ss_pred HH---HHHHHHHccCChhHHHHHHHhcCCCCCCCcchhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCcchHHHHHHH
Q 010342 107 FA---NLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183 (512)
Q Consensus 107 ~~---~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~ 183 (512)
+. .+.......+..+.+.+.+...... .+........+...+...|++++|.+.++...+.... +...+..+...
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~-~~~~~~~la~i 157 (355)
T cd05804 80 LKLHLGAFGLGDFSGMRDHVARVLPLWAPE-NPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPD-DAWAVHAVAHV 157 (355)
T ss_pred HHHhHHHHHhcccccCchhHHHHHhccCcC-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CcHHHHHHHHH
Confidence 22 1111112345555666665552211 1122233344556778889999999999888886432 45677778888
Q ss_pred HhccCchhHHHHHHHHHHhCCC-CCch--hhHHHHHHHHhccCCHHHHHHHHHHHHh
Q 010342 184 LCKHGGCMRAYQLLEEGIQFGY-LPSE--HTYKVLVEGLCGESDLEKARKVLQFMLS 237 (512)
Q Consensus 184 ~~~~~~~~~a~~~~~~~~~~~~-~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 237 (512)
+...|++++|...+++...... .|+. ..|..+...+...|++++|..+++....
T Consensus 158 ~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~ 214 (355)
T cd05804 158 LEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIA 214 (355)
T ss_pred HHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 8888999999998888776432 1222 2455677788888999999999988753
No 93
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.10 E-value=3.4e-06 Score=70.68 Aligned_cols=329 Identities=12% Similarity=0.057 Sum_probs=191.9
Q ss_pred ChHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHH---HHHHHhcCChhhHHHHHHHHHHHhhhcCCCCcch
Q 010342 28 NVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVL---VRGVLRTRDVERANVLMFKLWERMKEEEDLSVNN 104 (512)
Q Consensus 28 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l---~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 104 (512)
++.--.-+...+...|++..|+.-|....+- |+..|..+ ...|...|+...|..-+.++++. .|+.
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve~----dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel-------KpDF 105 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVEG----DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL-------KPDF 105 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcC----CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc-------CccH
Confidence 3444555677777888888888888887763 44444444 45677788888887766666643 3332
Q ss_pred H-hHHHHHHHHHccCChhHHHHHHHhcCCCCCCCcchhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCcchHHHHHHH
Q 010342 105 A-AFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183 (512)
Q Consensus 105 ~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~ 183 (512)
. .-..-...+.+.|.+++|..=|+.+.+..+... ...++.+-+..+.+. ......+..
T Consensus 106 ~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~---------------~~~eaqskl~~~~e~------~~l~~ql~s 164 (504)
T KOG0624|consen 106 MAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNG---------------LVLEAQSKLALIQEH------WVLVQQLKS 164 (504)
T ss_pred HHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcc---------------hhHHHHHHHHhHHHH------HHHHHHHHH
Confidence 1 111123456677777777777777666543211 111111111111110 112233445
Q ss_pred HhccCchhHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChhhH
Q 010342 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTEL 263 (512)
Q Consensus 184 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 263 (512)
+.-.|+...|++....+++.. +.|...+..-..+|...|++..|..=++..... ...++..+..+-..+...|+.+.+
T Consensus 165 ~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askL-s~DnTe~~ykis~L~Y~vgd~~~s 242 (504)
T KOG0624|consen 165 ASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKL-SQDNTEGHYKISQLLYTVGDAENS 242 (504)
T ss_pred HhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhc-cccchHHHHHHHHHHHhhhhHHHH
Confidence 556778888888888777653 457777777778888888888887777666532 333445555566666677777777
Q ss_pred HHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhhcc
Q 010342 264 LNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMP 343 (512)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 343 (512)
+..+++.++.+ ||...+-. .-..+.+..+.++.|. .....+++.++++..+..|+
T Consensus 243 L~~iRECLKld--pdHK~Cf~------~YKklkKv~K~les~e-----------------~~ie~~~~t~cle~ge~vlk 297 (504)
T KOG0624|consen 243 LKEIRECLKLD--PDHKLCFP------FYKKLKKVVKSLESAE-----------------QAIEEKHWTECLEAGEKVLK 297 (504)
T ss_pred HHHHHHHHccC--cchhhHHH------HHHHHHHHHHHHHHHH-----------------HHHhhhhHHHHHHHHHHHHh
Confidence 77776666542 33322111 1111222222222222 23345566666666666664
Q ss_pred cCCCCC--ChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCC
Q 010342 344 QRGYSP--GIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPS 416 (512)
Q Consensus 344 ~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 416 (512)
...-.+ ....+..+-.++...+++.+|++.-.+.+... +.|..++.--..+|.-...++.|+.-|+.+.+.+
T Consensus 298 ~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d-~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n 371 (504)
T KOG0624|consen 298 NEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDID-PDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELN 371 (504)
T ss_pred cCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcC-chHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC
Confidence 432111 12233445556666788888888888887743 4447778777888888888888888888887654
No 94
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.10 E-value=6.2e-06 Score=77.25 Aligned_cols=209 Identities=15% Similarity=0.050 Sum_probs=111.7
Q ss_pred cccccCcHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHhC-C-------C-CCChhhHHHHHHH
Q 010342 3 QLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHC-G-------V-LPNSLTYSVLVRG 73 (512)
Q Consensus 3 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-~-------~-~~~~~~~~~l~~~ 73 (512)
.|.-.|+.+.|.+..+.+. +...|..+.+.|.+.++.+-|.-.+..|... | . .|+ .+-..+.-.
T Consensus 737 fyvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvL 809 (1416)
T KOG3617|consen 737 FYVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVL 809 (1416)
T ss_pred EEEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHH
Confidence 4667899999998887665 3568999999999999999888777776432 1 1 122 222222333
Q ss_pred HHhcCChhhHHHHHHHHHHHhhhcCCCCcchHhHHHHHHHHHccCChhHHHHHHHhcCCCCCCCcchhHHHHHHHHHhcC
Q 010342 74 VLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSG 153 (512)
Q Consensus 74 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 153 (512)
....|..++|+.+|.+.-+ |..|=+.|-..|.+++|+++.+.-..-.. ..+|......+...+
T Consensus 810 AieLgMlEeA~~lYr~ckR--------------~DLlNKlyQs~g~w~eA~eiAE~~DRiHL---r~Tyy~yA~~Lear~ 872 (1416)
T KOG3617|consen 810 AIELGMLEEALILYRQCKR--------------YDLLNKLYQSQGMWSEAFEIAETKDRIHL---RNTYYNYAKYLEARR 872 (1416)
T ss_pred HHHHhhHHHHHHHHHHHHH--------------HHHHHHHHHhcccHHHHHHHHhhccceeh---hhhHHHHHHHHHhhc
Confidence 4456777777776655422 12233445555666666665544222211 233444444444445
Q ss_pred ChhhHHHHHHHH----------HHcC---------CCCCcchHHHHHHHHhccCchhHHHHHHHHHHhC----------C
Q 010342 154 RNHGASRVVYVM----------RKRG---------LTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQF----------G 204 (512)
Q Consensus 154 ~~~~a~~~~~~~----------~~~g---------~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----------~ 204 (512)
+.+.|++.|++. .... -..+...|.....-+-..|+.+.|+.+|..+.+. |
T Consensus 873 Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qG 952 (1416)
T KOG3617|consen 873 DIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQG 952 (1416)
T ss_pred cHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeecc
Confidence 555555444331 1110 0112333333444444455555555555543321 0
Q ss_pred ----------CCCchhhHHHHHHHHhccCCHHHHHHHHHHH
Q 010342 205 ----------YLPSEHTYKVLVEGLCGESDLEKARKVLQFM 235 (512)
Q Consensus 205 ----------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 235 (512)
-.-|....-.+.+.|-..|++.+|..+|.+.
T Consensus 953 k~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrA 993 (1416)
T KOG3617|consen 953 KTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRA 993 (1416)
T ss_pred CchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 0123334445666676777777777666554
No 95
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.09 E-value=1.6e-06 Score=77.02 Aligned_cols=103 Identities=19% Similarity=0.146 Sum_probs=80.2
Q ss_pred cccccCcHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCh-hhHHHHHHHHHhcCChh
Q 010342 3 QLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNS-LTYSVLVRGVLRTRDVE 81 (512)
Q Consensus 3 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~-~~~~~l~~~~~~~~~~~ 81 (512)
+.+..|+++.|+..|-+.+...+. |-..|..=..+|++.|++.+|++=-.+-.+. .|+- ..|+....+..-.|+++
T Consensus 11 aa~s~~d~~~ai~~~t~ai~l~p~-nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~~~ 87 (539)
T KOG0548|consen 11 AAFSSGDFETAIRLFTEAIMLSPT-NHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGDYE 87 (539)
T ss_pred hhcccccHHHHHHHHHHHHccCCC-ccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhcccHH
Confidence 567889999999999999988554 7778999999999999999998877666654 5665 46999999999999999
Q ss_pred hHHHHHHHHHHHhhhcCCCCcchHhHHHHHHHH
Q 010342 82 RANVLMFKLWERMKEEEDLSVNNAAFANLVDSL 114 (512)
Q Consensus 82 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 114 (512)
+|...|.+-++..+. +...++.+.+++
T Consensus 88 eA~~ay~~GL~~d~~------n~~L~~gl~~a~ 114 (539)
T KOG0548|consen 88 EAILAYSEGLEKDPS------NKQLKTGLAQAY 114 (539)
T ss_pred HHHHHHHHHhhcCCc------hHHHHHhHHHhh
Confidence 999988777654332 233444455555
No 96
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.05 E-value=4.3e-06 Score=86.50 Aligned_cols=372 Identities=12% Similarity=0.004 Sum_probs=220.0
Q ss_pred HHHHccCChhHHHHHHHhcCCCCCCCcchhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHhccCchh
Q 010342 112 DSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCM 191 (512)
Q Consensus 112 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~ 191 (512)
..+...|++.+|............ -..............|+++.+..++..+.......+..........+...|+++
T Consensus 349 ~~~~~~g~~~~Al~~a~~a~d~~~--~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~ 426 (903)
T PRK04841 349 EAWLAQGFPSEAIHHALAAGDAQL--LRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYS 426 (903)
T ss_pred HHHHHCCCHHHHHHHHHHCCCHHH--HHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHH
Confidence 344455566555554444332110 001111122334456777776666665532211112333334444556788999
Q ss_pred HHHHHHHHHHhCCC------CCc--hhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCc----ccHHHHHHHHHccCC
Q 010342 192 RAYQLLEEGIQFGY------LPS--EHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRT----RICNIYLRALCLIKN 259 (512)
Q Consensus 192 ~a~~~~~~~~~~~~------~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~ 259 (512)
++...+..+...-- .+. ......+...+...|+++.|...++.........+. .....+...+...|+
T Consensus 427 ~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~ 506 (903)
T PRK04841 427 EVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGE 506 (903)
T ss_pred HHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCC
Confidence 99988887754310 111 112223334556789999999999987653211111 233455566778999
Q ss_pred hhhHHHHHHHHHhcCCC---C--ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhC----CCC-CC-cHHHHHHHHHHHhhc
Q 010342 260 PTELLNVLVFMLQTQCQ---P--DVITLNTVINGFCKMGRIEEALKVLNDMVAG----KFC-AP-DAVTFTTIIFGLLNV 328 (512)
Q Consensus 260 ~~~a~~~~~~~~~~~~~---~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~-~~~~~~~l~~~~~~~ 328 (512)
+++|...+......... + ....+..+...+...|+++.|...+++.... +.. .+ ....+..+...+...
T Consensus 507 ~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~ 586 (903)
T PRK04841 507 LARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEW 586 (903)
T ss_pred HHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHh
Confidence 99999988887643211 1 1234455667788899999999988876542 110 01 223344556667778
Q ss_pred CCHHHHHHHHHhhcccCC-CCC--ChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCC-ChHhH-----HHHHHHHHhc
Q 010342 329 GRIQEALNLLYQVMPQRG-YSP--GIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVA-DSTTY-----AIVIDGLCES 399 (512)
Q Consensus 329 ~~~~~a~~~~~~~~~~~~-~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~-----~~l~~~~~~~ 399 (512)
|++++|...+.+.+.... ..+ ....+..+...+...|+++.|...++......... ....+ ...+..+...
T Consensus 587 G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 666 (903)
T PRK04841 587 ARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMT 666 (903)
T ss_pred cCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHC
Confidence 999999998877543211 112 23334445667778999999999988875421011 11111 1122444567
Q ss_pred CCHHHHHHHHHHhhcCCCCCC---HHhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-ChhhHHHHHHHHHhcCC
Q 010342 400 NQLDEAKRFWDDIVWPSNIHD---NYVYAAMIKGLCRSGKIHEAVHFLYELVDS----GVTP-NIVCYNVVIDGACKLSM 471 (512)
Q Consensus 400 g~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~ 471 (512)
|+.+.|...+........... ...+..+..++...|+.++|...+++.... |..+ ...+...+..++.+.|+
T Consensus 667 g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~ 746 (903)
T PRK04841 667 GDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGR 746 (903)
T ss_pred CCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCC
Confidence 899999999877654221111 112456777888899999999999887653 3222 23456677788889999
Q ss_pred HHHHHHHHHHHHHC
Q 010342 472 KREAYQILREMRKN 485 (512)
Q Consensus 472 ~~~a~~~~~~m~~~ 485 (512)
.++|.+.+.+..+.
T Consensus 747 ~~~A~~~L~~Al~l 760 (903)
T PRK04841 747 KSEAQRVLLEALKL 760 (903)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999998764
No 97
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.04 E-value=3.5e-08 Score=84.82 Aligned_cols=249 Identities=14% Similarity=0.050 Sum_probs=142.2
Q ss_pred HhccCchhHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChhhH
Q 010342 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTEL 263 (512)
Q Consensus 184 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 263 (512)
+.-.|++..++.-.+ ........+......+.+++...|+++.+. ..+.. +..|.......+...+...++.+.+
T Consensus 11 ~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~-~~~~~l~av~~la~y~~~~~~~e~~ 85 (290)
T PF04733_consen 11 QFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKK-SSSPELQAVRLLAEYLSSPSDKESA 85 (290)
T ss_dssp HHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-T-TSSCCCHHHHHHHHHHCTSTTHHCH
T ss_pred HHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhcc-CCChhHHHHHHHHHHHhCccchHHH
Confidence 334566665554443 222111122334444556666666655432 23322 2234444444444444333444445
Q ss_pred HHHHHHHHhcCCC-CChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhhc
Q 010342 264 LNVLVFMLQTQCQ-PDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVM 342 (512)
Q Consensus 264 ~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 342 (512)
..-+......... .+..........+...|++++|++++... .+.......+..+.+.++++.|.+.+..+-
T Consensus 86 l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~-------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~ 158 (290)
T PF04733_consen 86 LEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG-------GSLELLALAVQILLKMNRPDLAEKELKNMQ 158 (290)
T ss_dssp HHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT-------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc-------CcccHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4444443333222 22222223334556678888888887542 355666777888888888888888887743
Q ss_pred ccCCCCCChhhHHHHHHHHHc----cCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCC
Q 010342 343 PQRGYSPGIVTYNAVLRGLFR----LRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNI 418 (512)
Q Consensus 343 ~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 418 (512)
+. ..| .+...+..++.. ...+.+|..+|+++.+. .++++.+.+.+..++...|++++|.+++.+....+ +
T Consensus 159 -~~--~eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~ 232 (290)
T PF04733_consen 159 -QI--DED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-P 232 (290)
T ss_dssp -CC--SCC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--C
T ss_pred -hc--CCc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-c
Confidence 32 233 344445444432 34688899999998764 46788888888888889999999999998887665 5
Q ss_pred CCHHhHHHHHHHHHhcCCH-HHHHHHHHHHHHC
Q 010342 419 HDNYVYAAMIKGLCRSGKI-HEAVHFLYELVDS 450 (512)
Q Consensus 419 ~~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~~ 450 (512)
.+..++..++.+....|+. +.+.+.+.++...
T Consensus 233 ~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 233 NDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp CHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred CCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 5666777777777777776 6677788887764
No 98
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.00 E-value=4e-06 Score=80.09 Aligned_cols=458 Identities=10% Similarity=-0.014 Sum_probs=270.7
Q ss_pred cHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhhHHHHHH
Q 010342 9 RVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMF 88 (512)
Q Consensus 9 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 88 (512)
+...|...|=+..+..+. =...|..|.+.|....+...|...|++..+.+ .-|...+......|++..+++.|..+..
T Consensus 473 ~~~~al~ali~alrld~~-~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l 550 (1238)
T KOG1127|consen 473 NSALALHALIRALRLDVS-LAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICL 550 (1238)
T ss_pred hHHHHHHHHHHHHhcccc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHH
Confidence 355666666666665322 24479999999998888899999999998764 3466778888899999999999988743
Q ss_pred HHHHHhhhcCCCCcchHhHHHHHHHHHccCChhHHHHHHHhcCCCCCCCcchhHHHHHHHHHhcCChhhHHHHHHHHHHc
Q 010342 89 KLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKR 168 (512)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 168 (512)
..-+.. ....-...+-...-.|...++...|+.-|+......+ .|...|..+..+|...|++..|.++|.+....
T Consensus 551 ~~~qka----~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dP-kD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L 625 (1238)
T KOG1127|consen 551 RAAQKA----PAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDP-KDYNLWLGLGEAYPESGRYSHALKVFTKASLL 625 (1238)
T ss_pred HHhhhc----hHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCc-hhHHHHHHHHHHHHhcCceehHHHhhhhhHhc
Confidence 322211 1111112222355567788899999999988877665 67788999999999999999999999888765
Q ss_pred CCCCCcchHHHH--HHHHhccCchhHHHHHHHHHHhCC------CCCchhhHHHHHHHHhccCCHHHHHHHHHHH-----
Q 010342 169 GLTPSLVSYNSI--VHGLCKHGGCMRAYQLLEEGIQFG------YLPSEHTYKVLVEGLCGESDLEKARKVLQFM----- 235 (512)
Q Consensus 169 g~~p~~~~~~~l--~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~----- 235 (512)
.|+ .+|... ...-+..|.+.+++..+....... ..--..++..+...+...|-...+..+++.-
T Consensus 626 --rP~-s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~ 702 (1238)
T KOG1127|consen 626 --RPL-SKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFI 702 (1238)
T ss_pred --CcH-hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 332 233322 223346788899888888765431 1111223333333333333333333333332
Q ss_pred --HhCCCCCCcccHHHHHHHHH---ccC-C-h-hhHHHHHHH-HHhcCCC--------------------CChhhHHHHH
Q 010342 236 --LSKKDVDRTRICNIYLRALC---LIK-N-P-TELLNVLVF-MLQTQCQ--------------------PDVITLNTVI 286 (512)
Q Consensus 236 --~~~~~~~~~~~~~~l~~~~~---~~~-~-~-~~a~~~~~~-~~~~~~~--------------------~~~~~~~~l~ 286 (512)
.......+...|..+..++. ... + + .....++.. ....+.- .+..+|..++
T Consensus 703 ~~l~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLG 782 (1238)
T KOG1127|consen 703 VSLIHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLG 782 (1238)
T ss_pred HHHHHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHh
Confidence 22221112112221111111 111 0 0 000111111 1111111 1233343443
Q ss_pred HHHHh----c----CCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhhcccCCCCCChhhHHHHH
Q 010342 287 NGFCK----M----GRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVL 358 (512)
Q Consensus 287 ~~~~~----~----~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 358 (512)
..|.+ . .+...|+..+.+..+.. ..+..+|+.|.-. ...|.+.-|.--|-+.. ...+....+|..+.
T Consensus 783 inylr~f~~l~et~~~~~~Ai~c~KkaV~L~--ann~~~WnaLGVl-sg~gnva~aQHCfIks~--~sep~~~~~W~Nlg 857 (1238)
T KOG1127|consen 783 INYLRYFLLLGETMKDACTAIRCCKKAVSLC--ANNEGLWNALGVL-SGIGNVACAQHCFIKSR--FSEPTCHCQWLNLG 857 (1238)
T ss_pred HHHHHHHHHcCCcchhHHHHHHHHHHHHHHh--hccHHHHHHHHHh-hccchhhhhhhhhhhhh--hccccchhheeccc
Confidence 33333 1 23346777777776654 5677778877655 55567776666664432 22245667788888
Q ss_pred HHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHh----hcCCCCCCHHhHHHHHHHHHhc
Q 010342 359 RGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDI----VWPSNIHDNYVYAAMIKGLCRS 434 (512)
Q Consensus 359 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~ 434 (512)
-.+....+++.|...|...+... |.+...|-.....-...|+.-++..+|..- ...|-.++..-|-.........
T Consensus 858 vL~l~n~d~E~A~~af~~~qSLd-P~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~N 936 (1238)
T KOG1127|consen 858 VLVLENQDFEHAEPAFSSVQSLD-PLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQN 936 (1238)
T ss_pred eeEEecccHHHhhHHHHhhhhcC-chhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhc
Confidence 88889999999999999988764 556666666555566778877888777662 1233344444444444445556
Q ss_pred CCHHHHHHHHHHH----------HHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010342 435 GKIHEAVHFLYEL----------VDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMR 483 (512)
Q Consensus 435 g~~~~a~~~~~~~----------~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 483 (512)
|+.++-+...+++ .. +.+-....|.+.....-+.+.+..|.+...++.
T Consensus 937 g~~e~~I~t~~ki~sAs~al~~yf~-~~p~~~fAy~~~gstlEhL~ey~~a~ela~Rli 994 (1238)
T KOG1127|consen 937 GNIEESINTARKISSASLALSYYFL-GHPQLCFAYAANGSTLEHLEEYRAALELATRLI 994 (1238)
T ss_pred cchHHHHHHhhhhhhhHHHHHHHHh-cCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 6665544433332 22 223355677777777788888888888877754
No 99
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.99 E-value=7.8e-07 Score=91.94 Aligned_cols=269 Identities=14% Similarity=0.034 Sum_probs=125.9
Q ss_pred HHHHhcCChhhHHHHHHHHHHcCCCCCc----chHHHHHHHHhccCchhHHHHHHHHHHhC----CC-CCchhhHHHHHH
Q 010342 147 DSLCRSGRNHGASRVVYVMRKRGLTPSL----VSYNSIVHGLCKHGGCMRAYQLLEEGIQF----GY-LPSEHTYKVLVE 217 (512)
Q Consensus 147 ~~~~~~~~~~~a~~~~~~~~~~g~~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~ 217 (512)
..+...|++++|...++.....-...+. ...+.+...+...|++++|...+++.... |. .....++..+..
T Consensus 460 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~ 539 (903)
T PRK04841 460 QVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSE 539 (903)
T ss_pred HHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHH
Confidence 3344566666666666655442111111 12334444555566666666666655432 10 011223344455
Q ss_pred HHhccCCHHHHHHHHHHHHhC----CCCC---CcccHHHHHHHHHccCChhhHHHHHHHHHhc----CCCCChhhHHHHH
Q 010342 218 GLCGESDLEKARKVLQFMLSK----KDVD---RTRICNIYLRALCLIKNPTELLNVLVFMLQT----QCQPDVITLNTVI 286 (512)
Q Consensus 218 ~~~~~g~~~~a~~~~~~~~~~----~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~l~ 286 (512)
.+...|+++.|...+++.... +... ....+..+...+...|++++|...+...... +.......+..+.
T Consensus 540 ~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la 619 (903)
T PRK04841 540 ILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLA 619 (903)
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHH
Confidence 556666666666665554331 1111 1112333344455556666666666554432 1111122333344
Q ss_pred HHHHhcCCHHHHHHHHHHHhhC---CCCCCcHHHH--HHHHHHHhhcCCHHHHHHHHHhhcccCCCCCC--hhhHHHHHH
Q 010342 287 NGFCKMGRIEEALKVLNDMVAG---KFCAPDAVTF--TTIIFGLLNVGRIQEALNLLYQVMPQRGYSPG--IVTYNAVLR 359 (512)
Q Consensus 287 ~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~--~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~ 359 (512)
..+...|+++.|...++..... .......... ...+..+...|+.+.|..++..........+. ...+..+..
T Consensus 620 ~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~ 699 (903)
T PRK04841 620 KISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIAR 699 (903)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHH
Confidence 5556667777776666665331 1000000010 11223344466666666666553321110110 011234555
Q ss_pred HHHccCCHHHHHHHHHHHHhC----CCCCC-hHhHHHHHHHHHhcCCHHHHHHHHHHhhcC
Q 010342 360 GLFRLRRVEEAKEVFNCMLGI----GVVAD-STTYAIVIDGLCESNQLDEAKRFWDDIVWP 415 (512)
Q Consensus 360 ~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 415 (512)
++...|+.++|...+++.... |...+ ..+...+..++...|+.++|...+.+..+.
T Consensus 700 ~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 700 AQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 566667777777666665542 22211 224455556666777777777777666543
No 100
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.97 E-value=4.6e-06 Score=69.94 Aligned_cols=309 Identities=13% Similarity=0.091 Sum_probs=191.8
Q ss_pred HHHHHHHccCChhHHHHHHHhcCCCCCCCcchhHHHH---HHHHHhcCChhhHHHHHHHHHHcCCCCCcch-HHHHHHHH
Q 010342 109 NLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHM---IDSLCRSGRNHGASRVVYVMRKRGLTPSLVS-YNSIVHGL 184 (512)
Q Consensus 109 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l---~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~-~~~l~~~~ 184 (512)
.+.+.+...|++..|+.-|....+.+ +..|.++ ...|...|+...|+.-+....+. +||-.. -..-...+
T Consensus 43 ElGk~lla~~Q~sDALt~yHaAve~d----p~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~vl 116 (504)
T KOG0624|consen 43 ELGKELLARGQLSDALTHYHAAVEGD----PNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVVL 116 (504)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHcCC----chhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchhh
Confidence 36666777777777777666665533 2333333 34566666666666666666654 444321 11223345
Q ss_pred hccCchhHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChhhHH
Q 010342 185 CKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELL 264 (512)
Q Consensus 185 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 264 (512)
.+.|.+++|..-|+..++.. |+..+ ...++.+.--.++-.. ....+..+...|+...++
T Consensus 117 lK~Gele~A~~DF~~vl~~~--~s~~~---~~eaqskl~~~~e~~~----------------l~~ql~s~~~~GD~~~ai 175 (504)
T KOG0624|consen 117 LKQGELEQAEADFDQVLQHE--PSNGL---VLEAQSKLALIQEHWV----------------LVQQLKSASGSGDCQNAI 175 (504)
T ss_pred hhcccHHHHHHHHHHHHhcC--CCcch---hHHHHHHHHhHHHHHH----------------HHHHHHHHhcCCchhhHH
Confidence 56666777776666666543 21111 0111111111111111 122234455667777777
Q ss_pred HHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhhccc
Q 010342 265 NVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQ 344 (512)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 344 (512)
..+..+++..+. |...+..-..+|...|++..|+.-++...+.. ..+..++-.+-..+...|+.+.++..+++.++
T Consensus 176 ~~i~~llEi~~W-da~l~~~Rakc~i~~~e~k~AI~Dlk~askLs--~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK- 251 (504)
T KOG0624|consen 176 EMITHLLEIQPW-DASLRQARAKCYIAEGEPKKAIHDLKQASKLS--QDNTEGHYKISQLLYTVGDAENSLKEIRECLK- 251 (504)
T ss_pred HHHHHHHhcCcc-hhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc--ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc-
Confidence 777777776544 66777777788888888888888777776654 45666666677777788888888887777553
Q ss_pred CCCCCChhhH----HHH---------HHHHHccCCHHHHHHHHHHHHhCCCCCCh---HhHHHHHHHHHhcCCHHHHHHH
Q 010342 345 RGYSPGIVTY----NAV---------LRGLFRLRRVEEAKEVFNCMLGIGVVADS---TTYAIVIDGLCESNQLDEAKRF 408 (512)
Q Consensus 345 ~~~~~~~~~~----~~l---------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~ 408 (512)
+.||.... ..+ +......+++.++....+...+....... ..+..+-.++...|++.+|++.
T Consensus 252 --ldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqq 329 (504)
T KOG0624|consen 252 --LDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQ 329 (504)
T ss_pred --cCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHH
Confidence 24553221 111 12234567788888888887775422122 2455566778889999999999
Q ss_pred HHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 010342 409 WDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSG 451 (512)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 451 (512)
..+++... +.|..++.--..+|.-...++.|+.-|+...+.+
T Consensus 330 C~evL~~d-~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n 371 (504)
T KOG0624|consen 330 CKEVLDID-PDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELN 371 (504)
T ss_pred HHHHHhcC-chHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC
Confidence 99998754 5568888888899999999999999999888764
No 101
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.97 E-value=8.7e-08 Score=85.62 Aligned_cols=220 Identities=15% Similarity=0.088 Sum_probs=94.6
Q ss_pred hccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHH
Q 010342 220 CGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEAL 299 (512)
Q Consensus 220 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 299 (512)
.+.|++.+|.-.|+....+ .|.....|..+.......++-..|+..+++.++..+. +....-.|.-.|...|.-..|+
T Consensus 296 m~nG~L~~A~LafEAAVkq-dP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~-NleaLmaLAVSytNeg~q~~Al 373 (579)
T KOG1125|consen 296 MKNGDLSEAALAFEAAVKQ-DPQHAEAWQKLGITQAENENEQNAISALRRCLELDPT-NLEALMALAVSYTNEGLQNQAL 373 (579)
T ss_pred HhcCCchHHHHHHHHHHhh-ChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHhhhhhHHHHH
Confidence 4455555555555555432 3334445555555555555555555555555554432 4444455555555555555555
Q ss_pred HHHHHHhhCCCCCCcHHHHHH-------HHHHHhhcCCHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHccCCHHHHHH
Q 010342 300 KVLNDMVAGKFCAPDAVTFTT-------IIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKE 372 (512)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~-------l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 372 (512)
..++....... +-...-.. .-..+..........++|-++....+..+|+.....|.-.|--.|++++|..
T Consensus 374 ~~L~~Wi~~~p--~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiD 451 (579)
T KOG1125|consen 374 KMLDKWIRNKP--KYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVD 451 (579)
T ss_pred HHHHHHHHhCc--cchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHH
Confidence 55555543220 00000000 0001111111222233333333333333344444444444444455555555
Q ss_pred HHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCC-HHhHHHHHHHHHhcCCHHHHHHHHHH
Q 010342 373 VFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD-NYVYAAMIKGLCRSGKIHEAVHFLYE 446 (512)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~ 446 (512)
.|+.++... |-|..+||.|...++...+.++|+..|+++++. +|+ +.+...|.-+|...|.+++|.+.|-.
T Consensus 452 cf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~ 523 (579)
T KOG1125|consen 452 CFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKHLLE 523 (579)
T ss_pred HHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHHHHH
Confidence 555444432 223334455555554444555555555554432 222 12233344444445555555444433
No 102
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.95 E-value=9.6e-06 Score=75.11 Aligned_cols=52 Identities=15% Similarity=0.063 Sum_probs=22.2
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHhccCchhHHHHHHHH
Q 010342 145 MIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEE 199 (512)
Q Consensus 145 l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 199 (512)
.|..|-+.|..+..+++.++--.. .-..|-..+..-+-..|+...|..-|-+
T Consensus 856 aiqmydk~~~~ddmirlv~k~h~d---~l~dt~~~f~~e~e~~g~lkaae~~fle 907 (1636)
T KOG3616|consen 856 AIQMYDKHGLDDDMIRLVEKHHGD---HLHDTHKHFAKELEAEGDLKAAEEHFLE 907 (1636)
T ss_pred HHHHHHhhCcchHHHHHHHHhChh---hhhHHHHHHHHHHHhccChhHHHHHHHh
Confidence 344444555554444444332111 0112333444445555555555554433
No 103
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.95 E-value=5.6e-06 Score=76.61 Aligned_cols=192 Identities=16% Similarity=0.139 Sum_probs=99.3
Q ss_pred HHHHHccCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCC
Q 010342 251 LRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGR 330 (512)
Q Consensus 251 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 330 (512)
+.+....+.+.+|+.+++.+.+... -..-|..+.+-|+..|+++.|.++|.+.- .++-.+..|.+.|+
T Consensus 739 ieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~~----------~~~dai~my~k~~k 806 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEAD----------LFKDAIDMYGKAGK 806 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhcc----------hhHHHHHHHhcccc
Confidence 3444555666666666666655432 23345556666667777777776665432 13344566677777
Q ss_pred HHHHHHHHHhhcccCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHH
Q 010342 331 IQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWD 410 (512)
Q Consensus 331 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 410 (512)
+..|.++-.+.+ |.......|-+-..-+-..|++.+|+++|-.+. .|+. -|.+|-+.|..+..+++.+
T Consensus 807 w~da~kla~e~~---~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~~-----aiqmydk~~~~ddmirlv~ 874 (1636)
T KOG3616|consen 807 WEDAFKLAEECH---GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPDK-----AIQMYDKHGLDDDMIRLVE 874 (1636)
T ss_pred HHHHHHHHHHhc---CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----CchH-----HHHHHHhhCcchHHHHHHH
Confidence 777766654432 223334444444444555666666666554332 2222 3445556666666555555
Q ss_pred HhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 010342 411 DIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQI 478 (512)
Q Consensus 411 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~ 478 (512)
+-.- ..-..|-..+..-|-..|+...|..-|-+.- -|...++.|...+.|++|.++
T Consensus 875 k~h~---d~l~dt~~~f~~e~e~~g~lkaae~~flea~---------d~kaavnmyk~s~lw~dayri 930 (1636)
T KOG3616|consen 875 KHHG---DHLHDTHKHFAKELEAEGDLKAAEEHFLEAG---------DFKAAVNMYKASELWEDAYRI 930 (1636)
T ss_pred HhCh---hhhhHHHHHHHHHHHhccChhHHHHHHHhhh---------hHHHHHHHhhhhhhHHHHHHH
Confidence 4321 1112244445555556666666665553322 134444455555555555444
No 104
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.93 E-value=4.4e-06 Score=78.21 Aligned_cols=380 Identities=11% Similarity=0.103 Sum_probs=214.4
Q ss_pred ChHhHHHHHHH--HHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHH--------HHHHhhhc
Q 010342 28 NVVSYTTLIHG--YCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFK--------LWERMKEE 97 (512)
Q Consensus 28 ~~~~~~~l~~~--~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~--------~~~~~~~~ 97 (512)
|..+-..+++. |..-|+.+.|.+-.+-++. ...|..+.+.|.+.++.+-|.-.+-. .+++..++
T Consensus 725 d~~TRkaml~FSfyvtiG~MD~AfksI~~IkS------~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~ 798 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIKS------DSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQN 798 (1416)
T ss_pred CHHHHHhhhceeEEEEeccHHHHHHHHHHHhh------hHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhC
Confidence 55666666654 6778999999888877764 45788999999988887777544322 22222222
Q ss_pred CCCCcchHhHHHHHHHHHccCChhHHHHHHHhcCCCCCCCcchhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCcchH
Q 010342 98 EDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSY 177 (512)
Q Consensus 98 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~ 177 (512)
++ .+-.-..-.....|.+++|..+|.+.+..+ .|=..|-..|.+++|.++-+.-..-.+ ..||
T Consensus 799 ~~-----e~eakvAvLAieLgMlEeA~~lYr~ckR~D---------LlNKlyQs~g~w~eA~eiAE~~DRiHL---r~Ty 861 (1416)
T KOG3617|consen 799 GE-----EDEAKVAVLAIELGMLEEALILYRQCKRYD---------LLNKLYQSQGMWSEAFEIAETKDRIHL---RNTY 861 (1416)
T ss_pred Cc-----chhhHHHHHHHHHhhHHHHHHHHHHHHHHH---------HHHHHHHhcccHHHHHHHHhhccceeh---hhhH
Confidence 11 111113334457799999999998876533 355667788999999887664333222 2355
Q ss_pred HHHHHHHhccCchhHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHcc
Q 010342 178 NSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLI 257 (512)
Q Consensus 178 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 257 (512)
..-..-+...++.+.|++.|++.. .|--..+..|. .++...+.+.+.+. +...|.-..+.+-..
T Consensus 862 y~yA~~Lear~Di~~AleyyEK~~----~hafev~rmL~------e~p~~~e~Yv~~~~------d~~L~~WWgqYlES~ 925 (1416)
T KOG3617|consen 862 YNYAKYLEARRDIEAALEYYEKAG----VHAFEVFRMLK------EYPKQIEQYVRRKR------DESLYSWWGQYLESV 925 (1416)
T ss_pred HHHHHHHHhhccHHHHHHHHHhcC----ChHHHHHHHHH------hChHHHHHHHHhcc------chHHHHHHHHHHhcc
Confidence 555556666788888988887642 12111222221 12233333333322 234555556666667
Q ss_pred CChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCCHHHHHHH
Q 010342 258 KNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNL 337 (512)
Q Consensus 258 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 337 (512)
|+.+.|+.+|.... .|-++++..+-.|+.++|-++-++ ..|......+.+.|-..|++.+|...
T Consensus 926 GemdaAl~~Y~~A~---------D~fs~VrI~C~qGk~~kAa~iA~e-------sgd~AAcYhlaR~YEn~g~v~~Av~F 989 (1416)
T KOG3617|consen 926 GEMDAALSFYSSAK---------DYFSMVRIKCIQGKTDKAARIAEE-------SGDKAACYHLARMYENDGDVVKAVKF 989 (1416)
T ss_pred cchHHHHHHHHHhh---------hhhhheeeEeeccCchHHHHHHHh-------cccHHHHHHHHHHhhhhHHHHHHHHH
Confidence 77777777776543 345566666667777777777654 33555566677777777777777777
Q ss_pred HHhhcccCCCCCChhhHHHHHHHHHccCCHH----------------HHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCC
Q 010342 338 LYQVMPQRGYSPGIVTYNAVLRGLFRLRRVE----------------EAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQ 401 (512)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~----------------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 401 (512)
|.+. .++...|+.| +.++++ .|-.+|++. |. -+..-+..|-+.|.
T Consensus 990 fTrA----------qafsnAIRlc-KEnd~~d~L~nlal~s~~~d~v~aArYyEe~---g~-----~~~~AVmLYHkAGm 1050 (1416)
T KOG3617|consen 990 FTRA----------QAFSNAIRLC-KENDMKDRLANLALMSGGSDLVSAARYYEEL---GG-----YAHKAVMLYHKAGM 1050 (1416)
T ss_pred HHHH----------HHHHHHHHHH-HhcCHHHHHHHHHhhcCchhHHHHHHHHHHc---ch-----hhhHHHHHHHhhcc
Confidence 7553 1444444433 222222 222222221 10 11223445666676
Q ss_pred HHHHHHHHHH--------hhc--CCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHH----------CC----------
Q 010342 402 LDEAKRFWDD--------IVW--PSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVD----------SG---------- 451 (512)
Q Consensus 402 ~~~a~~~~~~--------~~~--~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----------~~---------- 451 (512)
+.+|+++--+ ++. .+...|+...+.-.+-++...++++|..++-..++ .|
T Consensus 1051 ~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~ 1130 (1416)
T KOG3617|consen 1051 IGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAEL 1130 (1416)
T ss_pred hHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHh
Confidence 6666654221 111 12223555555555555666666666555433221 11
Q ss_pred ------CCCCh----hhHHHHHHHHHhcCCHHHHHHHHHH
Q 010342 452 ------VTPNI----VCYNVVIDGACKLSMKREAYQILRE 481 (512)
Q Consensus 452 ------~~p~~----~~~~~l~~~~~~~g~~~~a~~~~~~ 481 (512)
-.|+. .....+...|.++|.+..|-+-|-+
T Consensus 1131 mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQ 1170 (1416)
T KOG3617|consen 1131 MTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQ 1170 (1416)
T ss_pred cCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhh
Confidence 12222 3356677888888888877655543
No 105
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.86 E-value=1.4e-05 Score=76.58 Aligned_cols=479 Identities=12% Similarity=0.002 Sum_probs=255.9
Q ss_pred cccccCcHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHH--HHHhcCCh
Q 010342 3 QLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVR--GVLRTRDV 80 (512)
Q Consensus 3 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~--~~~~~~~~ 80 (512)
.+.+.++...|+.-|+...+..++ |...|..+..+|.+.|.+..|+++|.+.... .|+. +|..... .-+..|.+
T Consensus 571 yyLea~n~h~aV~~fQsALR~dPk-D~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--rP~s-~y~~fk~A~~ecd~GkY 646 (1238)
T KOG1127|consen 571 YYLEAHNLHGAVCEFQSALRTDPK-DYNLWLGLGEAYPESGRYSHALKVFTKASLL--RPLS-KYGRFKEAVMECDNGKY 646 (1238)
T ss_pred cccCccchhhHHHHHHHHhcCCch-hHHHHHHHHHHHHhcCceehHHHhhhhhHhc--CcHh-HHHHHHHHHHHHHhhhH
Confidence 356788999999999999988665 8899999999999999999999999998764 3433 3433333 33457889
Q ss_pred hhHHHHHHHHHHHhhhcCCCCc-chHhHHHHHHHHHccCChhHHHHHHHh-------cCCCCCCCcchhHHHHHHHHHhc
Q 010342 81 ERANVLMFKLWERMKEEEDLSV-NNAAFANLVDSLCREGYVNEVFRIAED-------MPQGKSVNEEFACGHMIDSLCRS 152 (512)
Q Consensus 81 ~~a~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~-------~~~~~~~~~~~~~~~l~~~~~~~ 152 (512)
.++...+..++........... ...++-.....+...|-...+...++. ...+....+...|-.+-++|.-.
T Consensus 647 keald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f 726 (1238)
T KOG1127|consen 647 KEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIF 726 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHH
Confidence 9998888777664433222111 122333333333333333333333332 22222111222222111111100
Q ss_pred CC--hhh----HHHHHH-HHHHcC--------------------CCCCcchHHHHHHHHhc-------cC-chhHHHHHH
Q 010342 153 GR--NHG----ASRVVY-VMRKRG--------------------LTPSLVSYNSIVHGLCK-------HG-GCMRAYQLL 197 (512)
Q Consensus 153 ~~--~~~----a~~~~~-~~~~~g--------------------~~p~~~~~~~l~~~~~~-------~~-~~~~a~~~~ 197 (512)
-. ++- ...+|. +....+ ...+..+|..++..|.+ .+ +...|...+
T Consensus 727 ~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~ 806 (1238)
T KOG1127|consen 727 SQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCC 806 (1238)
T ss_pred HHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHH
Confidence 00 000 000010 011111 11134445545444433 11 233567777
Q ss_pred HHHHhCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChhhHHHHHHHHHhcCCCC
Q 010342 198 EEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQP 277 (512)
Q Consensus 198 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 277 (512)
.+.++.. ..+..+|+.|.-. ...|++.-+.-.|-+-.. ..+.....|..+...+....+++.|...|.......+.
T Consensus 807 KkaV~L~-ann~~~WnaLGVl-sg~gnva~aQHCfIks~~-sep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP~- 882 (1238)
T KOG1127|consen 807 KKAVSLC-ANNEGLWNALGVL-SGIGNVACAQHCFIKSRF-SEPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLDPL- 882 (1238)
T ss_pred HHHHHHh-hccHHHHHHHHHh-hccchhhhhhhhhhhhhh-ccccchhheeccceeEEecccHHHhhHHHHhhhhcCch-
Confidence 7766543 3455566655443 666777777766655442 23444567777788888889999999998887766433
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHhh----CCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhhcc--------cC
Q 010342 278 DVITLNTVINGFCKMGRIEEALKVLNDMVA----GKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMP--------QR 345 (512)
Q Consensus 278 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--------~~ 345 (512)
+...|..........|+.-+...+|..-.. .+. .++..-|-........+|+.++-+...+++-. -.
T Consensus 883 nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gk-a~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~ 961 (1238)
T KOG1127|consen 883 NLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGK-AKKFQYWLCATEIHLQNGNIEESINTARKISSASLALSYYFL 961 (1238)
T ss_pred hhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccc-cchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHHHHHh
Confidence 555665555555667877777777765221 121 44544454555555666666655444333110 01
Q ss_pred CCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhC-CCCCChHhHH----HHHHHHHhcCCHHHHHHHHHHhhcCCCCCC
Q 010342 346 GYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGI-GVVADSTTYA----IVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420 (512)
Q Consensus 346 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~----~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 420 (512)
+.+.+...|.......-+.+.+..|..+..++... ....+...|+ ...+.+...|.++.|..-+..... ..+
T Consensus 962 ~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgefe~A~~a~~~~~~---evd 1038 (1238)
T KOG1127|consen 962 GHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFESAKKASWKEWM---EVD 1038 (1238)
T ss_pred cCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchhhHhhhhcccch---hHH
Confidence 22445566766666666677777776666665321 1123333444 233455556666665554433211 111
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHH
Q 010342 421 NYVYAAMIKGLCRSGKIHEAVHFLYELVDS-GVTPN-IVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWR 495 (512)
Q Consensus 421 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~ 495 (512)
......-+.. .-.++++++.+.|++.... +-..+ ......++.+....+..+.|...+-+..... +|+....-
T Consensus 1039 Edi~gt~l~l-Ffkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~~~k~~A~~lLfe~~~ls-~~~~~sll 1113 (1238)
T KOG1127|consen 1039 EDIRGTDLTL-FFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLARQKNDAQFLLFEVKSLS-KVQASSLL 1113 (1238)
T ss_pred HHHhhhhHHH-HHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhcccchHHHHHHHHHHHhC-ccchhhHH
Confidence 1111111111 3357888888888887653 11222 2334555555666777777777766665432 44443333
No 106
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.86 E-value=2.2e-06 Score=84.67 Aligned_cols=187 Identities=10% Similarity=0.060 Sum_probs=99.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhhcccCCCCCChhhHHHHHHH
Q 010342 281 TLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360 (512)
Q Consensus 281 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 360 (512)
.|.++++.-..-|.-+...++|+++.+.. .....|..|...|.+.+..++|.++++.|++..+ -....|...+..
T Consensus 1499 iWiA~lNlEn~yG~eesl~kVFeRAcqyc---d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~f 1573 (1710)
T KOG1070|consen 1499 IWIAYLNLENAYGTEESLKKVFERACQYC---DAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADF 1573 (1710)
T ss_pred HHHHHHhHHHhhCcHHHHHHHHHHHHHhc---chHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHH
Confidence 44455554444555555566666655431 2233455555566666666666666666555443 334455555666
Q ss_pred HHccCCHHHHHHHHHHHHhCCCCCC---hHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCH
Q 010342 361 LFRLRRVEEAKEVFNCMLGIGVVAD---STTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKI 437 (512)
Q Consensus 361 ~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 437 (512)
+.+.++-+.|..++.+..+. -|. .....-.+..-.+.|+.+++..+|+..+... +.-...|+.+++.-.++|+.
T Consensus 1574 Ll~~ne~~aa~~lL~rAL~~--lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~ 1650 (1710)
T KOG1070|consen 1574 LLRQNEAEAARELLKRALKS--LPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDI 1650 (1710)
T ss_pred HhcccHHHHHHHHHHHHHhh--cchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCH
Confidence 66666666666666655553 122 1223333344445566666666666665432 33445666666666666666
Q ss_pred HHHHHHHHHHHHCCCCCCh--hhHHHHHHHHHhcCCHHHH
Q 010342 438 HEAVHFLYELVDSGVTPNI--VCYNVVIDGACKLSMKREA 475 (512)
Q Consensus 438 ~~a~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~a 475 (512)
+.++.+|++.+..++.|-. ..|...+..--..|+-+.+
T Consensus 1651 ~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~v 1690 (1710)
T KOG1070|consen 1651 KYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNV 1690 (1710)
T ss_pred HHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhH
Confidence 6666666666666555432 3344444444444554433
No 107
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.85 E-value=9.9e-07 Score=81.29 Aligned_cols=216 Identities=11% Similarity=0.058 Sum_probs=176.5
Q ss_pred cHHHHHHHHHccCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHH
Q 010342 246 ICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGL 325 (512)
Q Consensus 246 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 325 (512)
.-..+...+...|-...|..++++. ..|..++.+|...|+..+|..+..+..+. +|++..|..+.+..
T Consensus 400 ~q~~laell~slGitksAl~I~Erl---------emw~~vi~CY~~lg~~~kaeei~~q~lek---~~d~~lyc~LGDv~ 467 (777)
T KOG1128|consen 400 LQRLLAELLLSLGITKSALVIFERL---------EMWDPVILCYLLLGQHGKAEEINRQELEK---DPDPRLYCLLGDVL 467 (777)
T ss_pred HHHHHHHHHHHcchHHHHHHHHHhH---------HHHHHHHHHHHHhcccchHHHHHHHHhcC---CCcchhHHHhhhhc
Confidence 3455667777888888888888754 46778888999999999999999888873 78999999999998
Q ss_pred hhcCCHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHH
Q 010342 326 LNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEA 405 (512)
Q Consensus 326 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 405 (512)
....-+++|.++.+..+.. .-..+.....+.+++.++.+.|+.-.+.. +....+|-.+..+..+.+++..|
T Consensus 468 ~d~s~yEkawElsn~~sar--------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~a 538 (777)
T KOG1128|consen 468 HDPSLYEKAWELSNYISAR--------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAA 538 (777)
T ss_pred cChHHHHHHHHHhhhhhHH--------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHH
Confidence 8888899999988775432 11111222234789999999999887754 55677888899999999999999
Q ss_pred HHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 010342 406 KRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRK 484 (512)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 484 (512)
.+.|...+... +.+...||.+-.+|.+.|+-.+|...+++..+.+ .-+...|...+-...+.|.+++|.+.+.++.+
T Consensus 539 v~aF~rcvtL~-Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 539 VKAFHRCVTLE-PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred HHHHHHHhhcC-CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 99999998654 6677899999999999999999999999999987 55777888889999999999999999998863
No 108
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.84 E-value=2.2e-06 Score=83.59 Aligned_cols=237 Identities=13% Similarity=0.100 Sum_probs=162.8
Q ss_pred ChHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChh-hHHHHHHHHHhcCChhhHHHHHHHHHHHhhhcCCCCcchHh
Q 010342 28 NVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSL-TYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAA 106 (512)
Q Consensus 28 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 106 (512)
+...+..|+..+...+++++|.++.+...+. .|+.. .|..+...+.+.++.+.+..+ .
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv--~----------------- 88 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL--N----------------- 88 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh--h-----------------
Confidence 5668999999999999999999999977775 45544 444444566677776665433 2
Q ss_pred HHHHHHHHHccCChhHHHHHHHhcCCCCCCCcchhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHhc
Q 010342 107 FANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCK 186 (512)
Q Consensus 107 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~ 186 (512)
++.......++.-..-+...+...+ .+..++..+..+|-+.|+.++|.++++++.+..+. |+.+.|.+...|+.
T Consensus 89 ---~l~~~~~~~~~~~ve~~~~~i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~-n~~aLNn~AY~~ae 162 (906)
T PRK14720 89 ---LIDSFSQNLKWAIVEHICDKILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKADRD-NPEIVKKLATSYEE 162 (906)
T ss_pred ---hhhhcccccchhHHHHHHHHHHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHH
Confidence 3333333444433333333444322 33446777899999999999999999999998744 88899999999999
Q ss_pred cCchhHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChhhHHHH
Q 010342 187 HGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNV 266 (512)
Q Consensus 187 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 266 (512)
. +.++|.+++.+++.. +...+++..+.+++.++.... +.+...+ ..+
T Consensus 163 ~-dL~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~-~~d~d~f----------------~~i 209 (906)
T PRK14720 163 E-DKEKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYN-SDDFDFF----------------LRI 209 (906)
T ss_pred h-hHHHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcC-cccchHH----------------HHH
Confidence 8 999999999887653 566678888888888887542 2222222 223
Q ss_pred HHHHHhc-CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHh
Q 010342 267 LVFMLQT-QCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLL 326 (512)
Q Consensus 267 ~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 326 (512)
.+.+..+ +...-..++-.+-..|...+++++++.+++.+.+.. +.|.....-++.+|.
T Consensus 210 ~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~--~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 210 ERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHD--NKNNKAREELIRFYK 268 (906)
T ss_pred HHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcC--CcchhhHHHHHHHHH
Confidence 3333322 223344556666677778888888888888888766 556666777777665
No 109
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.84 E-value=9.7e-07 Score=79.15 Aligned_cols=222 Identities=13% Similarity=0.071 Sum_probs=120.4
Q ss_pred HHHhcCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHhccCchhHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCCHHH
Q 010342 148 SLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEK 227 (512)
Q Consensus 148 ~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 227 (512)
-+.+.|+..+|.-.|+...+..+. +...|..|.......++-..|+..+++..+.. +-|......|.-.|...|.-..
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqdP~-haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~~ 371 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQDPQ-HAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQNQ 371 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhChH-HHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHHH
Confidence 356777788888888877776544 66788888888888888788888888877654 4466677777777788887777
Q ss_pred HHHHHHHHHhCCCCCCc-------ccHHHHHHHHHccCChhhHHHHHHHHH-hcCCCCChhhHHHHHHHHHhcCCHHHHH
Q 010342 228 ARKVLQFMLSKKDVDRT-------RICNIYLRALCLIKNPTELLNVLVFML-QTQCQPDVITLNTVINGFCKMGRIEEAL 299 (512)
Q Consensus 228 a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 299 (512)
|.+.++.......+-.. ..+..- ..+........+.++|-.+. ..+..+|+.+...|.-.|--.|++++|.
T Consensus 372 Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~-~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdrai 450 (579)
T KOG1125|consen 372 ALKMLDKWIRNKPKYVHLVSAGENEDFENT-KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAV 450 (579)
T ss_pred HHHHHHHHHHhCccchhccccCccccccCC-cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHH
Confidence 88777776543211000 000000 00011111122222222222 2222244444555555555555555555
Q ss_pred HHHHHHhhCCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhhcccCCCCCC-hhhHHHHHHHHHccCCHHHHHHHHHHH
Q 010342 300 KVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPG-IVTYNAVLRGLFRLRRVEEAKEVFNCM 377 (512)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~ 377 (512)
+.|+...... +.|...|+.|.-.++...+..+|+..|.+.++- .|+ +.....|.-.|...|.+++|...|-..
T Consensus 451 Dcf~~AL~v~--Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL---qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~A 524 (579)
T KOG1125|consen 451 DCFEAALQVK--PNDYLLWNRLGATLANGNRSEEAISAYNRALQL---QPGYVRVRYNLGISCMNLGAYKEAVKHLLEA 524 (579)
T ss_pred HHHHHHHhcC--CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc---CCCeeeeehhhhhhhhhhhhHHHHHHHHHHH
Confidence 5555555543 445555555555555555555555555554322 333 233333444455555555555554443
No 110
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.82 E-value=2e-06 Score=69.88 Aligned_cols=117 Identities=11% Similarity=0.125 Sum_probs=56.8
Q ss_pred CCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHH-HhcCC--HHHHH
Q 010342 365 RRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGL-CRSGK--IHEAV 441 (512)
Q Consensus 365 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~--~~~a~ 441 (512)
++.+++...++...+.. +.+...|..+...|...|++++|...+++..+.. +.+...+..+..++ ...|+ .++|.
T Consensus 53 ~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A~ 130 (198)
T PRK10370 53 QTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQTR 130 (198)
T ss_pred hhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHHH
Confidence 33444444444444432 3444455555555555555555555555555443 33444444444432 33344 35555
Q ss_pred HHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 010342 442 HFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRK 484 (512)
Q Consensus 442 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 484 (512)
+++++..+.+.. +...+..+...+.+.|++++|...|+++.+
T Consensus 131 ~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~ 172 (198)
T PRK10370 131 EMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQKVLD 172 (198)
T ss_pred HHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 555555554322 444455555555555555555555555554
No 111
>PLN02789 farnesyltranstransferase
Probab=98.80 E-value=8.2e-06 Score=71.37 Aligned_cols=218 Identities=10% Similarity=0.077 Sum_probs=124.7
Q ss_pred CChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcC-CHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCCH--HHH
Q 010342 258 KNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMG-RIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRI--QEA 334 (512)
Q Consensus 258 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~a 334 (512)
+..++|+..+..+++..+. +...|+.-..++...| ++++++..++++.+.. +.+..+|+.....+.+.|.. +++
T Consensus 51 e~serAL~lt~~aI~lnP~-~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n--pknyqaW~~R~~~l~~l~~~~~~~e 127 (320)
T PLN02789 51 ERSPRALDLTADVIRLNPG-NYTVWHFRRLCLEALDADLEEELDFAEDVAEDN--PKNYQIWHHRRWLAEKLGPDAANKE 127 (320)
T ss_pred CCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC--CcchHHhHHHHHHHHHcCchhhHHH
Confidence 4455566666655554322 3334444444455555 4677777777776655 45555555544444444442 455
Q ss_pred HHHHHhhcccCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhc---CC----HHHHHH
Q 010342 335 LNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCES---NQ----LDEAKR 407 (512)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~----~~~a~~ 407 (512)
+..+.+++... +-+..+|+...-++...|+++++++.++++.+.+ +-|...|+....++.+. |. .++...
T Consensus 128 l~~~~kal~~d--pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d-~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~ 204 (320)
T PLN02789 128 LEFTRKILSLD--AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEED-VRNNSAWNQRYFVITRSPLLGGLEAMRDSELK 204 (320)
T ss_pred HHHHHHHHHhC--cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC-CCchhHHHHHHHHHHhccccccccccHHHHHH
Confidence 66665655333 3455666666666666677777777777777654 34455555555444433 22 235566
Q ss_pred HHHHhhcCCCCCCHHhHHHHHHHHHhc----CCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcC-------------
Q 010342 408 FWDDIVWPSNIHDNYVYAAMIKGLCRS----GKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLS------------- 470 (512)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g------------- 470 (512)
+..+++... +.|...|+.+...+... +...+|.+++.+..+.+ ..+...+..|+..|+...
T Consensus 205 y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~ 282 (320)
T PLN02789 205 YTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCEGLQPTAEFRDTVDTL 282 (320)
T ss_pred HHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHhhhccchhhhhhhhcc
Confidence 665665543 55666777776666652 33455777777666543 225566667777776532
Q ss_pred -----CHHHHHHHHHHHH
Q 010342 471 -----MKREAYQILREMR 483 (512)
Q Consensus 471 -----~~~~a~~~~~~m~ 483 (512)
..++|.++++.+.
T Consensus 283 ~~~~~~~~~a~~~~~~l~ 300 (320)
T PLN02789 283 AEELSDSTLAQAVCSELE 300 (320)
T ss_pred ccccccHHHHHHHHHHHH
Confidence 3467888888874
No 112
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.80 E-value=9.7e-05 Score=66.21 Aligned_cols=151 Identities=10% Similarity=0.042 Sum_probs=106.3
Q ss_pred hhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHH
Q 010342 260 PTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLY 339 (512)
Q Consensus 260 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 339 (512)
.+.....+...+.....--..+|-..++.-.+..-+..|..+|.+..+.+...-.+...++++..++ .++..-|.++|+
T Consensus 347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFe 425 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFE 425 (656)
T ss_pred hhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHH
Confidence 4555566666555433323446677777777888888888888888887764446677777777665 467778888887
Q ss_pred hhcccCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCh--HhHHHHHHHHHhcCCHHHHHHHHHHhh
Q 010342 340 QVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADS--TTYAIVIDGLCESNQLDEAKRFWDDIV 413 (512)
Q Consensus 340 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~ 413 (512)
--++.. ..++.-....+..+...++-..+..+|++....+++|+. .+|..+++--..-|++..+.++-++..
T Consensus 426 LGLkkf--~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~ 499 (656)
T KOG1914|consen 426 LGLKKF--GDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRF 499 (656)
T ss_pred HHHHhc--CCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 666554 334444556677778888888888888888887655543 478888888888888888888777664
No 113
>PF12854 PPR_1: PPR repeat
Probab=98.79 E-value=8.7e-09 Score=55.78 Aligned_cols=34 Identities=56% Similarity=1.163 Sum_probs=30.7
Q ss_pred CCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHH
Q 010342 23 RGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMR 56 (512)
Q Consensus 23 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 56 (512)
.|..||..+|++||.+|++.|++++|.++|++|.
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 3788999999999999999999999999999884
No 114
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.77 E-value=1.7e-05 Score=64.23 Aligned_cols=152 Identities=14% Similarity=0.147 Sum_probs=91.4
Q ss_pred HHHHHhhcCCHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHh--
Q 010342 321 IIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCE-- 398 (512)
Q Consensus 321 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-- 398 (512)
-...|.+.+++++|++.+.. . .+......=+..+.+..+++-|.+.++.|.+. .+..|.+.|..++.+
T Consensus 114 aa~i~~~~~~~deAl~~~~~-~------~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~la 183 (299)
T KOG3081|consen 114 AAIIYMHDGDFDEALKALHL-G------ENLEAAALNVQILLKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWVKLA 183 (299)
T ss_pred hhHHhhcCCChHHHHHHHhc-c------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHHh
Confidence 34456677777777776644 1 12222222334455666777777777777763 355566666655544
Q ss_pred --cCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHH-HH
Q 010342 399 --SNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKR-EA 475 (512)
Q Consensus 399 --~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~-~a 475 (512)
.+.+.+|.-+|+++.+. .+|+..+.+..+.++...|++++|..+++...+.... ++.+...++..-...|... -.
T Consensus 184 ~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~-dpetL~Nliv~a~~~Gkd~~~~ 261 (299)
T KOG3081|consen 184 TGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAK-DPETLANLIVLALHLGKDAEVT 261 (299)
T ss_pred ccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCCChHHH
Confidence 33567777777777643 3677777777777777777777777777777766433 4555555555555555443 34
Q ss_pred HHHHHHHHH
Q 010342 476 YQILREMRK 484 (512)
Q Consensus 476 ~~~~~~m~~ 484 (512)
.+.+.+++.
T Consensus 262 ~r~l~QLk~ 270 (299)
T KOG3081|consen 262 ERNLSQLKL 270 (299)
T ss_pred HHHHHHHHh
Confidence 455555554
No 115
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.76 E-value=7.7e-07 Score=81.97 Aligned_cols=235 Identities=11% Similarity=0.069 Sum_probs=185.0
Q ss_pred hhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChhhHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 010342 210 HTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGF 289 (512)
Q Consensus 210 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 289 (512)
..-..+...+...|-...|..+++++. .+...+.+|+..|+..+|..+..+-.+ -+|++..|..+.+..
T Consensus 399 q~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv~ 467 (777)
T KOG1128|consen 399 QLQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDVL 467 (777)
T ss_pred hHHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhhc
Confidence 344566778888999999999998875 577889999999999999999998887 377889999998888
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHccCCHHH
Q 010342 290 CKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEE 369 (512)
Q Consensus 290 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 369 (512)
....-+++|.++.+....+ .-..+.....+.+++.++.+.|+..+... +....+|-.+..+..+.+++..
T Consensus 468 ~d~s~yEkawElsn~~sar--------A~r~~~~~~~~~~~fs~~~~hle~sl~~n--plq~~~wf~~G~~ALqlek~q~ 537 (777)
T KOG1128|consen 468 HDPSLYEKAWELSNYISAR--------AQRSLALLILSNKDFSEADKHLERSLEIN--PLQLGTWFGLGCAALQLEKEQA 537 (777)
T ss_pred cChHHHHHHHHHhhhhhHH--------HHHhhccccccchhHHHHHHHHHHHhhcC--ccchhHHHhccHHHHHHhhhHH
Confidence 8878899999999876532 11222223345789999999999987766 3445588888888889999999
Q ss_pred HHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 010342 370 AKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVD 449 (512)
Q Consensus 370 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 449 (512)
|.+.|....... +.+...||.+-.+|.+.++..+|...+.+..+.+ ..+...|...+....+.|.+++|.+.+.++.+
T Consensus 538 av~aF~rcvtL~-Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 538 AVKAFHRCVTLE-PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred HHHHHHHHhhcC-CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 999999888753 5566789999999999999999999999999877 56666787788888999999999999998875
Q ss_pred CC-CCCChhhHHHHHHHHH
Q 010342 450 SG-VTPNIVCYNVVIDGAC 467 (512)
Q Consensus 450 ~~-~~p~~~~~~~l~~~~~ 467 (512)
.. ...|......++....
T Consensus 616 ~~~~~~d~~vl~~iv~~~~ 634 (777)
T KOG1128|consen 616 LRKKYKDDEVLLIIVRTVL 634 (777)
T ss_pred hhhhcccchhhHHHHHHHH
Confidence 31 1114444444444443
No 116
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.76 E-value=3.6e-06 Score=68.11 Aligned_cols=158 Identities=16% Similarity=0.098 Sum_probs=87.9
Q ss_pred HHHHHHHhhcCCHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHh
Q 010342 319 TTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCE 398 (512)
Q Consensus 319 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 398 (512)
..+-..+...|+-+....+..+.... .+.|.......+....+.|++..|...+++..... ++|...|+.+.-+|.+
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~--~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq 146 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA--YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQ 146 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc--CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHH
Confidence 44444555555555555555443211 13333344445555666666666666666666543 5566666666666666
Q ss_pred cCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 010342 399 SNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQI 478 (512)
Q Consensus 399 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~ 478 (512)
.|+++.|..-|.+..+.. +.+....+.|.-.+.-.|+.+.|..++......+ .-|...-..+..+....|++++|..+
T Consensus 147 ~Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~A~~i 224 (257)
T COG5010 147 LGRFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFREAEDI 224 (257)
T ss_pred ccChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHHHHhh
Confidence 666666666666665543 3344455555555556666666666666665543 22445555555666666666666665
Q ss_pred HHH
Q 010342 479 LRE 481 (512)
Q Consensus 479 ~~~ 481 (512)
...
T Consensus 225 ~~~ 227 (257)
T COG5010 225 AVQ 227 (257)
T ss_pred ccc
Confidence 443
No 117
>PF12854 PPR_1: PPR repeat
Probab=98.75 E-value=1.4e-08 Score=55.00 Aligned_cols=32 Identities=44% Similarity=0.877 Sum_probs=21.8
Q ss_pred CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 010342 451 GVTPNIVCYNVVIDGACKLSMKREAYQILREM 482 (512)
Q Consensus 451 ~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m 482 (512)
|+.||..+|++||.+|++.|+.++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 56666666666666666666666666666665
No 118
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.74 E-value=2.2e-06 Score=72.80 Aligned_cols=191 Identities=14% Similarity=0.071 Sum_probs=125.3
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC-cHHHHHHHHHHHhhcCCHHHHHHHHHhhcccCCCCCCh-hh
Q 010342 276 QPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAP-DAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGI-VT 353 (512)
Q Consensus 276 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~ 353 (512)
......+..+...+...|+++.|...|+++.......+ ....+..+..++...|++++|...+.+.++..+-.|.. ..
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 109 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA 109 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence 34556677777888889999999999998877542111 12466777888889999999999998876554322221 13
Q ss_pred HHHHHHHHHcc--------CCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHH
Q 010342 354 YNAVLRGLFRL--------RRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYA 425 (512)
Q Consensus 354 ~~~l~~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 425 (512)
+..+..++... |++++|...++.+.+.. +.+...+..+..... ... .. .....
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~~~~----~~~------~~--------~~~~~ 170 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY-PNSEYAPDAKKRMDY----LRN------RL--------AGKEL 170 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC-CCChhHHHHHHHHHH----HHH------HH--------HHHHH
Confidence 44444555443 67788888888887652 222222222221110 000 00 00112
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCC-CC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 010342 426 AMIKGLCRSGKIHEAVHFLYELVDSGV-TP-NIVCYNVVIDGACKLSMKREAYQILREMRKN 485 (512)
Q Consensus 426 ~l~~~~~~~g~~~~a~~~~~~~~~~~~-~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 485 (512)
.+...+.+.|++++|...+++..+... .| ....+..+..++.+.|++++|..+++.+...
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 466778899999999999999987632 12 3567889999999999999999999888753
No 119
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.73 E-value=9.5e-06 Score=80.43 Aligned_cols=224 Identities=11% Similarity=0.049 Sum_probs=113.0
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC---cHHHHHHHHHHHhhcCCHHHHHHHHHhhcccCCCCCChhhHH
Q 010342 279 VITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAP---DAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYN 355 (512)
Q Consensus 279 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 355 (512)
...|-..|......++.++|+++.++....-.... -...|.++++.-...|.-+...++|+++.+- ......|.
T Consensus 1458 Si~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy---cd~~~V~~ 1534 (1710)
T KOG1070|consen 1458 SILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY---CDAYTVHL 1534 (1710)
T ss_pred chHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh---cchHHHHH
Confidence 34455555555555666666666655554221111 1233444444444555555555555553321 11223445
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCC--CHHhHHHHHHHHHh
Q 010342 356 AVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIH--DNYVYAAMIKGLCR 433 (512)
Q Consensus 356 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~ 433 (512)
.|...|.+.+.+++|.++++.|.+. ..-...+|...+..+.+..+-+.|..++.++.+.- +. ......-.+..-.+
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~l-Pk~eHv~~IskfAqLEFk 1612 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSL-PKQEHVEFISKFAQLEFK 1612 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhc-chhhhHHHHHHHHHHHhh
Confidence 5555566666666666666666553 12344555556666666666566666666555321 11 22334444444455
Q ss_pred cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh--HHHHHHHHhhccCCCCC
Q 010342 434 SGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDA--VTWRILDKLHGNRGNDF 508 (512)
Q Consensus 434 ~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~--~~~~~l~~~~~~~g~~~ 508 (512)
.|+.+++..+|+..+..- +--...|+.+++.-.++|+.+.++.+|++....++.|-. ..|...+..=...|++.
T Consensus 1613 ~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~ 1688 (1710)
T KOG1070|consen 1613 YGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEK 1688 (1710)
T ss_pred cCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchh
Confidence 566666666666555542 113445666666666666666666666666655555542 33444444444444443
No 120
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.72 E-value=4.1e-06 Score=67.77 Aligned_cols=159 Identities=15% Similarity=0.135 Sum_probs=113.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhhcccCCCCCChhhHHHHHHHHH
Q 010342 283 NTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLF 362 (512)
Q Consensus 283 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 362 (512)
..+-..+...|+-+....+........ +.+.......+....+.|++..|...+++... .-++|...|+.+.-+|.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~--~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~lgaald 145 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAY--PKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNLLGAALD 145 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccC--cccHHHHHHHHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhHHHHHHH
Confidence 445556666677777777766655443 45555666677777888888888888877543 33777788888888888
Q ss_pred ccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHH
Q 010342 363 RLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVH 442 (512)
Q Consensus 363 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 442 (512)
+.|+++.|..-|.+..+.. +-++..++.+...|.-.|+++.|..++......+ .-|..+-..+.......|++++|.+
T Consensus 146 q~Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~A~~ 223 (257)
T COG5010 146 QLGRFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFREAED 223 (257)
T ss_pred HccChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHHHHh
Confidence 8888888888888887753 4455667777777777888888888888776543 4466666777777778888888877
Q ss_pred HHHHH
Q 010342 443 FLYEL 447 (512)
Q Consensus 443 ~~~~~ 447 (512)
+..+-
T Consensus 224 i~~~e 228 (257)
T COG5010 224 IAVQE 228 (257)
T ss_pred hcccc
Confidence 66543
No 121
>PLN02789 farnesyltranstransferase
Probab=98.71 E-value=1.2e-05 Score=70.27 Aligned_cols=213 Identities=10% Similarity=0.056 Sum_probs=156.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcC-CHHHHHHHHHhhcccCCCCCChhhHHHHHHHHH
Q 010342 284 TVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVG-RIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLF 362 (512)
Q Consensus 284 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 362 (512)
.+-..+...+..++|+.+.+++.... +.+..+|+....++...| ++++++..+.+++... +.+..+|+.....+.
T Consensus 42 ~~ra~l~~~e~serAL~lt~~aI~ln--P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n--pknyqaW~~R~~~l~ 117 (320)
T PLN02789 42 YFRAVYASDERSPRALDLTADVIRLN--PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN--PKNYQIWHHRRWLAE 117 (320)
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHC--chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC--CcchHHhHHHHHHHH
Confidence 33444555678899999999999865 556667776666677777 5799999998877554 444455665544455
Q ss_pred ccCC--HHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhc---CCH
Q 010342 363 RLRR--VEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRS---GKI 437 (512)
Q Consensus 363 ~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~ 437 (512)
+.|+ .+++..+++.+.+.. +-|..+|+....++...|+++++++.+.++++.+ +.|...|+.....+.+. |..
T Consensus 118 ~l~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d-~~N~sAW~~R~~vl~~~~~l~~~ 195 (320)
T PLN02789 118 KLGPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEED-VRNNSAWNQRYFVITRSPLLGGL 195 (320)
T ss_pred HcCchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC-CCchhHHHHHHHHHHhccccccc
Confidence 5565 367888998898865 5678889999999999999999999999999876 56677887777666554 222
Q ss_pred ----HHHHHHHHHHHHCCCCCChhhHHHHHHHHHhc----CCHHHHHHHHHHHHHCCCCCChHHHHHHHHhhccC
Q 010342 438 ----HEAVHFLYELVDSGVTPNIVCYNVVIDGACKL----SMKREAYQILREMRKNGLNPDAVTWRILDKLHGNR 504 (512)
Q Consensus 438 ----~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~----g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 504 (512)
++..++..+++...+ -|...|+.+...+... ++..+|.+.+.+..+.+ +.+...+..|++.|+..
T Consensus 196 ~~~~e~el~y~~~aI~~~P-~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~~ 268 (320)
T PLN02789 196 EAMRDSELKYTIDAILANP-RNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCEG 268 (320)
T ss_pred cccHHHHHHHHHHHHHhCC-CCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHhh
Confidence 467777778877653 3788899888888773 44567888888877643 33566788888888763
No 122
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.71 E-value=4.2e-06 Score=68.00 Aligned_cols=156 Identities=8% Similarity=0.095 Sum_probs=114.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHccC
Q 010342 286 INGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLR 365 (512)
Q Consensus 286 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 365 (512)
+..|...|+++.+......+.. |. . .+...++.+++...+.+.+... +.+...|..+...|...|
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~-----~~-~-------~~~~~~~~~~~i~~l~~~L~~~--P~~~~~w~~Lg~~~~~~g 87 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD-----PL-H-------QFASQQTPEAQLQALQDKIRAN--PQNSEQWALLGEYYLWRN 87 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC-----cc-c-------cccCchhHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHCC
Confidence 4467788888876555433321 11 0 1223566677777777766555 667788888889999999
Q ss_pred CHHHHHHHHHHHHhCCCCCChHhHHHHHHHH-HhcCC--HHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHH
Q 010342 366 RVEEAKEVFNCMLGIGVVADSTTYAIVIDGL-CESNQ--LDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVH 442 (512)
Q Consensus 366 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 442 (512)
++++|...|++..+.. +.+...+..+..++ ...|+ .++|.+++++..+.+ +.+...+..+...+...|++++|+.
T Consensus 88 ~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~ 165 (198)
T PRK10370 88 DYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQTREMIDKALALD-ANEVTALMLLASDAFMQADYAQAIE 165 (198)
T ss_pred CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHH
Confidence 9999999999998865 55777788887764 66676 589999999998776 5677888888899999999999999
Q ss_pred HHHHHHHCCCCCChhhH
Q 010342 443 FLYELVDSGVTPNIVCY 459 (512)
Q Consensus 443 ~~~~~~~~~~~p~~~~~ 459 (512)
.|+++.+.. +|+..-+
T Consensus 166 ~~~~aL~l~-~~~~~r~ 181 (198)
T PRK10370 166 LWQKVLDLN-SPRVNRT 181 (198)
T ss_pred HHHHHHhhC-CCCccHH
Confidence 999998875 4444333
No 123
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.69 E-value=1.1e-05 Score=65.34 Aligned_cols=208 Identities=15% Similarity=0.124 Sum_probs=134.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhhcccCCCCCChhhHHHHHHHHH
Q 010342 283 NTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLF 362 (512)
Q Consensus 283 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 362 (512)
..+-++|...|.+.....-. .... .|.......+......-++.+.-+.-+.+.+.......+......-...|+
T Consensus 45 ~y~~raylAlg~~~~~~~eI---~~~~--~~~lqAvr~~a~~~~~e~~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~ 119 (299)
T KOG3081|consen 45 VYMYRAYLALGQYQIVISEI---KEGK--ATPLQAVRLLAEYLELESNKKSILASLYELVADSTDGSNLIDLLLAAIIYM 119 (299)
T ss_pred HHHHHHHHHccccccccccc---cccc--CChHHHHHHHHHHhhCcchhHHHHHHHHHHHHhhccchhHHHHHHhhHHhh
Confidence 33445555555544333222 2211 334444444444444444544444444444434433444333334455688
Q ss_pred ccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhc----CCHH
Q 010342 363 RLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRS----GKIH 438 (512)
Q Consensus 363 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~ 438 (512)
+.+++++|++..... -+......=+..+.+..+++-|.+.+++|.+. .+..+.+.|..++.+. +.+.
T Consensus 120 ~~~~~deAl~~~~~~------~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~la~ggek~q 190 (299)
T KOG3081|consen 120 HDGDFDEALKALHLG------ENLEAAALNVQILLKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWVKLATGGEKIQ 190 (299)
T ss_pred cCCChHHHHHHHhcc------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHHhccchhhh
Confidence 999999999988762 23344444455677888999999999999763 3556888888877653 5688
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHhhccCCC
Q 010342 439 EAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRGN 506 (512)
Q Consensus 439 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~ 506 (512)
+|.-+|++|-++ ..|++.+.+....++...|++++|..++++..... .-++.|..-++.+--..|.
T Consensus 191 dAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd-~~dpetL~Nliv~a~~~Gk 256 (299)
T KOG3081|consen 191 DAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD-AKDPETLANLIVLALHLGK 256 (299)
T ss_pred hHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHhCC
Confidence 999999999774 48899999999999999999999999999998754 4456666655544444443
No 124
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.67 E-value=5.9e-06 Score=70.23 Aligned_cols=187 Identities=12% Similarity=0.012 Sum_probs=129.7
Q ss_pred CcccHHHHHHHHHccCChhhHHHHHHHHHhcCCC-C-ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcH-HHHH
Q 010342 243 RTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQ-P-DVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDA-VTFT 319 (512)
Q Consensus 243 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~ 319 (512)
....+......+...|+++.|...++.+....+. | ....+..+..++...|++++|...++++.+.....+.. .++.
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 111 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYY 111 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHH
Confidence 3456777788889999999999999999876532 1 12466778899999999999999999998765212221 2455
Q ss_pred HHHHHHhhc--------CCHHHHHHHHHhhcccCCCCCCh-hhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHH
Q 010342 320 TIIFGLLNV--------GRIQEALNLLYQVMPQRGYSPGI-VTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYA 390 (512)
Q Consensus 320 ~l~~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 390 (512)
.+..++... |+.++|.+.+.+.+... |+. ..+..+.... . ... ... ....
T Consensus 112 ~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~---p~~~~~~~a~~~~~-~---~~~------~~~--------~~~~ 170 (235)
T TIGR03302 112 LRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY---PNSEYAPDAKKRMD-Y---LRN------RLA--------GKEL 170 (235)
T ss_pred HHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC---CCChhHHHHHHHHH-H---HHH------HHH--------HHHH
Confidence 555666554 77889999998876443 332 2222221110 0 000 000 1123
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhcCCC--CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 010342 391 IVIDGLCESNQLDEAKRFWDDIVWPSN--IHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDS 450 (512)
Q Consensus 391 ~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 450 (512)
.+...|.+.|++++|...+++..+... +.....+..+..++...|++++|...++.+...
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 566778899999999999999886531 224568889999999999999999999888764
No 125
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.66 E-value=1.1e-06 Score=67.43 Aligned_cols=94 Identities=7% Similarity=-0.155 Sum_probs=62.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh
Q 010342 389 YAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACK 468 (512)
Q Consensus 389 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 468 (512)
+..+...+...|++++|...|+.+.... +.+...+..+..++...|++++|...|++..+.+ +.+...+..+..++..
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~ 104 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKM 104 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHH
Confidence 4445566666777777777777766554 4566666667777777777777777777776654 2356666666677777
Q ss_pred cCCHHHHHHHHHHHHH
Q 010342 469 LSMKREAYQILREMRK 484 (512)
Q Consensus 469 ~g~~~~a~~~~~~m~~ 484 (512)
.|++++|...++...+
T Consensus 105 ~g~~~eAi~~~~~Al~ 120 (144)
T PRK15359 105 MGEPGLAREAFQTAIK 120 (144)
T ss_pred cCCHHHHHHHHHHHHH
Confidence 7777777777777665
No 126
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.65 E-value=0.0005 Score=65.73 Aligned_cols=93 Identities=13% Similarity=0.055 Sum_probs=54.9
Q ss_pred HHHHHHHHHccCCHH---HHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHH
Q 010342 354 YNAVLRGLFRLRRVE---EAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKG 430 (512)
Q Consensus 354 ~~~l~~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 430 (512)
.+.++..|-+.++.. +|+.+++...... +.|..+--.+++.|.-.|-+..|.++|..+--..+..|..-|. +...
T Consensus 439 v~~Lid~~rktnd~~~l~eaI~LLE~glt~s-~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh~-~~~~ 516 (932)
T KOG2053|consen 439 VNHLIDLWRKTNDLTDLFEAITLLENGLTKS-PHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLGHL-IFRR 516 (932)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHhhcC-CccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhccchHH-HHHH
Confidence 345666777777655 3444555544432 3445555667788888888888888888775555555433322 2234
Q ss_pred HHhcCCHHHHHHHHHHHH
Q 010342 431 LCRSGKIHEAVHFLYELV 448 (512)
Q Consensus 431 ~~~~g~~~~a~~~~~~~~ 448 (512)
+...|++..+...+....
T Consensus 517 ~~t~g~~~~~s~~~~~~l 534 (932)
T KOG2053|consen 517 AETSGRSSFASNTFNEHL 534 (932)
T ss_pred HHhcccchhHHHHHHHHH
Confidence 444566666666555443
No 127
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.62 E-value=3.1e-06 Score=64.89 Aligned_cols=110 Identities=8% Similarity=-0.087 Sum_probs=89.5
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHH
Q 010342 353 TYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLC 432 (512)
Q Consensus 353 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 432 (512)
.+..+...+...|++++|...|+.+.... +.+...+..+..++...|++++|...|+++...+ +.+...+..+..++.
T Consensus 26 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~ 103 (144)
T PRK15359 26 TVYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLK 103 (144)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHH
Confidence 35566778889999999999999998865 5677888999999999999999999999998765 678888999999999
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 010342 433 RSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDG 465 (512)
Q Consensus 433 ~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~ 465 (512)
..|++++|...|++.++.. +.+...|.....+
T Consensus 104 ~~g~~~eAi~~~~~Al~~~-p~~~~~~~~~~~~ 135 (144)
T PRK15359 104 MMGEPGLAREAFQTAIKMS-YADASWSEIRQNA 135 (144)
T ss_pred HcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 9999999999999998864 2244445444333
No 128
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.62 E-value=2.4e-05 Score=75.78 Aligned_cols=146 Identities=14% Similarity=0.118 Sum_probs=101.8
Q ss_pred CCcHHHHHHHHHHHhhcCCHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHH
Q 010342 312 APDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAI 391 (512)
Q Consensus 312 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 391 (512)
+.+...+..|.....+.|.+++|..+++..++.. +-+......+...+.+.+++++|...+++..... +.+......
T Consensus 83 ~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~--Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~ 159 (694)
T PRK15179 83 PHTELFQVLVARALEAAHRSDEGLAVWRGIHQRF--PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILL 159 (694)
T ss_pred cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC--CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHH
Confidence 4557777777777888888888888887755332 2334455566777778888888888888887754 445566777
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHH
Q 010342 392 VIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVV 462 (512)
Q Consensus 392 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l 462 (512)
+..++...|++++|..+|+++...+ +.+..++..+..++...|+.++|...|++..+.. .|....|+.+
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~ 228 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRR 228 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHH
Confidence 7777888888888888888887633 4456677778888888888888888888777652 3333444433
No 129
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.60 E-value=3.3e-05 Score=74.90 Aligned_cols=136 Identities=15% Similarity=0.049 Sum_probs=78.8
Q ss_pred CCCCcccHHHHHHHHHccCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHH
Q 010342 240 DVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFT 319 (512)
Q Consensus 240 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 319 (512)
.+.+...+..+.....+.|.+++|..+++...+..+. +......+...+.+.+++++|+..+++..... +.+.....
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd-~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~--p~~~~~~~ 158 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPD-SSEAFILMLRGVKRQQGIEAGRAEIELYFSGG--SSSAREIL 158 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC--CCCHHHHH
Confidence 3334555666666666666666666666666655432 34445555556666666666666666666554 44555555
Q ss_pred HHHHHHhhcCCHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 010342 320 TIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGI 380 (512)
Q Consensus 320 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 380 (512)
.+..++.+.|++++|..+|++.+... +-+..++..+...+...|+.++|...|+...+.
T Consensus 159 ~~a~~l~~~g~~~~A~~~y~~~~~~~--p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~ 217 (694)
T PRK15179 159 LEAKSWDEIGQSEQADACFERLSRQH--PEFENGYVGWAQSLTRRGALWRARDVLQAGLDA 217 (694)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 56666666666666666666654311 223455555666666666666666666666553
No 130
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.60 E-value=2.8e-06 Score=65.01 Aligned_cols=104 Identities=10% Similarity=0.015 Sum_probs=64.8
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 010342 387 TTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGA 466 (512)
Q Consensus 387 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 466 (512)
.....+...+...|++++|...++.+...+ +.+...+..+...+...|++++|...+++..+.+ +.+...+..+...+
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~ 95 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECL 95 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHH
Confidence 445555566666677777777776665543 4455666666666666677777777776666554 33455566666666
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCChHHH
Q 010342 467 CKLSMKREAYQILREMRKNGLNPDAVTW 494 (512)
Q Consensus 467 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~ 494 (512)
...|++++|.+.+++..+ +.|+...+
T Consensus 96 ~~~g~~~~A~~~~~~al~--~~p~~~~~ 121 (135)
T TIGR02552 96 LALGEPESALKALDLAIE--ICGENPEY 121 (135)
T ss_pred HHcCCHHHHHHHHHHHHH--hccccchH
Confidence 677777777777776665 34554443
No 131
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.58 E-value=0.00048 Score=62.01 Aligned_cols=186 Identities=8% Similarity=0.081 Sum_probs=133.4
Q ss_pred HHHHHHHHHHHhhCCCCCCcHHHHHHHHHHH---hhcCCHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHccCCHHHHH
Q 010342 295 IEEALKVLNDMVAGKFCAPDAVTFTTIIFGL---LNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAK 371 (512)
Q Consensus 295 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 371 (512)
.+++..+++.....-. ..+..+|..+.+.- ......+.....+.+.+......|+. +|..+++.-.+..-++.|.
T Consensus 309 t~e~~~~yEr~I~~l~-~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tL-v~~~~mn~irR~eGlkaaR 386 (656)
T KOG1914|consen 309 TDEAASIYERAIEGLL-KENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTL-VYCQYMNFIRRAEGLKAAR 386 (656)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCce-ehhHHHHHHHHhhhHHHHH
Confidence 4556666666554221 22333333333221 11223556666777766556566664 6777888888888899999
Q ss_pred HHHHHHHhCCCCC-ChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 010342 372 EVFNCMLGIGVVA-DSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDS 450 (512)
Q Consensus 372 ~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 450 (512)
.+|.++.+.+..+ +..++++++.-|+ .++.+-|.++|+--.+.- ..+..--...+.-+...++-..+..+|++.+..
T Consensus 387 ~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkkf-~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s 464 (656)
T KOG1914|consen 387 KIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKKF-GDSPEYVLKYLDFLSHLNDDNNARALFERVLTS 464 (656)
T ss_pred HHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHhc-CCChHHHHHHHHHHHHhCcchhHHHHHHHHHhc
Confidence 9999999987777 6677888888766 578899999999876542 344445567788888899999999999999988
Q ss_pred CCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 010342 451 GVTPN--IVCYNVVIDGACKLSMKREAYQILREMRK 484 (512)
Q Consensus 451 ~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 484 (512)
++.|+ ..+|..++.--..-|+...+.++-+++..
T Consensus 465 ~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~ 500 (656)
T KOG1914|consen 465 VLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFT 500 (656)
T ss_pred cCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 65654 47899999999999999999999888754
No 132
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.49 E-value=0.00012 Score=59.13 Aligned_cols=187 Identities=13% Similarity=0.111 Sum_probs=119.4
Q ss_pred ChhhHHHHHHHHHhc---C-CCCChh-hHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCCHHH
Q 010342 259 NPTELLNVLVFMLQT---Q-CQPDVI-TLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQE 333 (512)
Q Consensus 259 ~~~~a~~~~~~~~~~---~-~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 333 (512)
+++++.+++..++.. | ..++.. .|..++-+....|+.+.|...++++...- +.+...-..-...+-..|.+++
T Consensus 27 nseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f--p~S~RV~~lkam~lEa~~~~~~ 104 (289)
T KOG3060|consen 27 NSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF--PGSKRVGKLKAMLLEATGNYKE 104 (289)
T ss_pred CHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC--CCChhHHHHHHHHHHHhhchhh
Confidence 444455544444321 2 233333 34455556667788888888888877654 2333322222223455678888
Q ss_pred HHHHHHhhcccCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhh
Q 010342 334 ALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIV 413 (512)
Q Consensus 334 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 413 (512)
|+++++..+.+. +.|..++.--+...-..|+.-.|++-+.+..+. +..|...|.-+.+.|...|++++|.-.+++++
T Consensus 105 A~e~y~~lL~dd--pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~l 181 (289)
T KOG3060|consen 105 AIEYYESLLEDD--PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELL 181 (289)
T ss_pred HHHHHHHHhccC--cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 888888877555 556666665555555667767777777777764 46788888888888888888888888888887
Q ss_pred cCCCCCCHHhHHHHHHHHHhcC---CHHHHHHHHHHHHHCC
Q 010342 414 WPSNIHDNYVYAAMIKGLCRSG---KIHEAVHFLYELVDSG 451 (512)
Q Consensus 414 ~~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~ 451 (512)
-.. |.+...+..+.+.+...| +.+.+.++|.+.++..
T Consensus 182 l~~-P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~ 221 (289)
T KOG3060|consen 182 LIQ-PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLN 221 (289)
T ss_pred HcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhC
Confidence 553 455556666666655544 4566788888777754
No 133
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.47 E-value=0.00015 Score=71.24 Aligned_cols=239 Identities=8% Similarity=0.039 Sum_probs=152.8
Q ss_pred CcchHHHHHHHHhccCchhHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCcccHHHHHH
Q 010342 173 SLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLR 252 (512)
Q Consensus 173 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 252 (512)
+...+..|+..+...+++++|.++.+...+.. +-....|-.+...+...++.+.+..+ .+ +.
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~-P~~i~~yy~~G~l~~q~~~~~~~~lv--~~---------------l~ 91 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEH-KKSISALYISGILSLSRRPLNDSNLL--NL---------------ID 91 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CcceehHHHHHHHHHhhcchhhhhhh--hh---------------hh
Confidence 44577888888888899999999888766642 22333444444456666665555544 22 22
Q ss_pred HHHccCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCCHH
Q 010342 253 ALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQ 332 (512)
Q Consensus 253 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 332 (512)
......++..+..+...+.+.+ -+...+..+..+|.+.|+.++|..+++++.+.. +.++...+.+...|... +.+
T Consensus 92 ~~~~~~~~~~ve~~~~~i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D--~~n~~aLNn~AY~~ae~-dL~ 166 (906)
T PRK14720 92 SFSQNLKWAIVEHICDKILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKAD--RDNPEIVKKLATSYEEE-DKE 166 (906)
T ss_pred hcccccchhHHHHHHHHHHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHh-hHH
Confidence 2223334444444444555432 244577888899999999999999999999877 67888899999888888 999
Q ss_pred HHHHHHHhhcccCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHh
Q 010342 333 EALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDI 412 (512)
Q Consensus 333 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 412 (512)
+|.+++.+.+.. +...+++..+..+|.++.... +.+...+..+.+.....-
T Consensus 167 KA~~m~~KAV~~----------------~i~~kq~~~~~e~W~k~~~~~-~~d~d~f~~i~~ki~~~~------------ 217 (906)
T PRK14720 167 KAITYLKKAIYR----------------FIKKKQYVGIEEIWSKLVHYN-SDDFDFFLRIERKVLGHR------------ 217 (906)
T ss_pred HHHHHHHHHHHH----------------HHhhhcchHHHHHHHHHHhcC-cccchHHHHHHHHHHhhh------------
Confidence 999888775422 566678888888888888753 223333332322221111
Q ss_pred hcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 010342 413 VWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGAC 467 (512)
Q Consensus 413 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 467 (512)
+..--..++-.+-..|...++++++..+++.+.+.... |.....-++.+|.
T Consensus 218 ---~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~-n~~a~~~l~~~y~ 268 (906)
T PRK14720 218 ---EFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNK-NNKAREELIRFYK 268 (906)
T ss_pred ---ccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCc-chhhHHHHHHHHH
Confidence 11222334455556666777788888888888776422 5555666666665
No 134
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.46 E-value=1.1e-05 Score=61.60 Aligned_cols=98 Identities=15% Similarity=0.093 Sum_probs=75.7
Q ss_pred hhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHH
Q 010342 351 IVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKG 430 (512)
Q Consensus 351 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 430 (512)
......+...+...|++++|...++.+...+ +.+...+..+..++...|++++|...++...+.+ +.+...+..+...
T Consensus 17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~ 94 (135)
T TIGR02552 17 LEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAEC 94 (135)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHH
Confidence 3445566677778888888888888887754 5566777788888888888888888888887664 5566777778888
Q ss_pred HHhcCCHHHHHHHHHHHHHC
Q 010342 431 LCRSGKIHEAVHFLYELVDS 450 (512)
Q Consensus 431 ~~~~g~~~~a~~~~~~~~~~ 450 (512)
+...|++++|...|++..+.
T Consensus 95 ~~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 95 LLALGEPESALKALDLAIEI 114 (135)
T ss_pred HHHcCCHHHHHHHHHHHHHh
Confidence 88888888888888888775
No 135
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.45 E-value=0.00011 Score=65.11 Aligned_cols=147 Identities=16% Similarity=0.163 Sum_probs=78.0
Q ss_pred HhhcCCHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC-hHhHHHHHHHHHhcCCHH
Q 010342 325 LLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVAD-STTYAIVIDGLCESNQLD 403 (512)
Q Consensus 325 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~ 403 (512)
+...|.+++|+..+...+... +-|+.........+...++.++|.+.++.+... .|+ ....-.+..+|.+.|++.
T Consensus 316 ~~~~~~~d~A~~~l~~L~~~~--P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~ 391 (484)
T COG4783 316 TYLAGQYDEALKLLQPLIAAQ--PDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQ 391 (484)
T ss_pred HHHhcccchHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChH
Confidence 344555566666555543332 333334444445555666666666666666554 233 334444555666666666
Q ss_pred HHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010342 404 EAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMR 483 (512)
Q Consensus 404 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 483 (512)
+|..+++...... +.|...|..|.++|...|+..++..... ..+...|+++.|...+....
T Consensus 392 eai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~A------------------E~~~~~G~~~~A~~~l~~A~ 452 (484)
T COG4783 392 EAIRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLARA------------------EGYALAGRLEQAIIFLMRAS 452 (484)
T ss_pred HHHHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHHH------------------HHHHhCCCHHHHHHHHHHHH
Confidence 6666666555433 4555566666666666665555544332 23334566666666666665
Q ss_pred HCCCCCChHHHH
Q 010342 484 KNGLNPDAVTWR 495 (512)
Q Consensus 484 ~~~~~p~~~~~~ 495 (512)
+. ..++..+|.
T Consensus 453 ~~-~~~~~~~~a 463 (484)
T COG4783 453 QQ-VKLGFPDWA 463 (484)
T ss_pred Hh-ccCCcHHHH
Confidence 54 345544443
No 136
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.36 E-value=0.0002 Score=63.61 Aligned_cols=147 Identities=18% Similarity=0.193 Sum_probs=104.3
Q ss_pred HHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhhcccCCCCCC-hhhHHHHHHHHHccCC
Q 010342 288 GFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPG-IVTYNAVLRGLFRLRR 366 (512)
Q Consensus 288 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~ 366 (512)
.+...|.+++|+..++.+.... +.|+..+......+.+.++.++|.+.+++++... |+ ....-.+..++.+.|+
T Consensus 315 ~~~~~~~~d~A~~~l~~L~~~~--P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~---P~~~~l~~~~a~all~~g~ 389 (484)
T COG4783 315 QTYLAGQYDEALKLLQPLIAAQ--PDNPYYLELAGDILLEANKAKEAIERLKKALALD---PNSPLLQLNLAQALLKGGK 389 (484)
T ss_pred HHHHhcccchHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC---CCccHHHHHHHHHHHhcCC
Confidence 4455678888888888877665 5667777777778888888888888887766443 43 4455566777888888
Q ss_pred HHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHH
Q 010342 367 VEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYE 446 (512)
Q Consensus 367 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 446 (512)
+.+|+.+++...... +.|+..|..|..+|...|+..++..-..+... ..|+++.|...+..
T Consensus 390 ~~eai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~------------------~~G~~~~A~~~l~~ 450 (484)
T COG4783 390 PQEAIRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLARAEGYA------------------LAGRLEQAIIFLMR 450 (484)
T ss_pred hHHHHHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHHHHHHH------------------hCCCHHHHHHHHHH
Confidence 888888888877754 67777888888888888888877777776632 34777777777776
Q ss_pred HHHCCCCCChhhH
Q 010342 447 LVDSGVTPNIVCY 459 (512)
Q Consensus 447 ~~~~~~~p~~~~~ 459 (512)
..+.. .++..+|
T Consensus 451 A~~~~-~~~~~~~ 462 (484)
T COG4783 451 ASQQV-KLGFPDW 462 (484)
T ss_pred HHHhc-cCCcHHH
Confidence 66542 3444444
No 137
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.33 E-value=0.00034 Score=56.61 Aligned_cols=189 Identities=13% Similarity=0.125 Sum_probs=109.5
Q ss_pred cCchhHHHHHHHHHHhC---C-CCCchh-hHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChh
Q 010342 187 HGGCMRAYQLLEEGIQF---G-YLPSEH-TYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPT 261 (512)
Q Consensus 187 ~~~~~~a~~~~~~~~~~---~-~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 261 (512)
..+.++..+++.++... | ..++.. .|..++-+....|..+.|...++.+..+ .+.+..+...-.
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~-fp~S~RV~~lka---------- 93 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR-FPGSKRVGKLKA---------- 93 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh-CCCChhHHHHHH----------
Confidence 44566677766666532 3 334433 3344444555566666666666666543 122222211111
Q ss_pred hHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhh
Q 010342 262 ELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQV 341 (512)
Q Consensus 262 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 341 (512)
-.+...|++++|+++++.+.+.+ +.|..++-.-+-..-..|+..+|++-+.+.
T Consensus 94 -------------------------m~lEa~~~~~~A~e~y~~lL~dd--pt~~v~~KRKlAilka~GK~l~aIk~ln~Y 146 (289)
T KOG3060|consen 94 -------------------------MLLEATGNYKEAIEYYESLLEDD--PTDTVIRKRKLAILKAQGKNLEAIKELNEY 146 (289)
T ss_pred -------------------------HHHHHhhchhhHHHHHHHHhccC--cchhHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 12334567777777777777665 455555555555555566666676666665
Q ss_pred cccCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcC---CHHHHHHHHHHhhcCC
Q 010342 342 MPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESN---QLDEAKRFWDDIVWPS 416 (512)
Q Consensus 342 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~ 416 (512)
++.. ..|...|..+...|...|++++|.-.++++.-.. |.++..+..+.+.+...| +.+.+.++|.+.++..
T Consensus 147 L~~F--~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~-P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~ 221 (289)
T KOG3060|consen 147 LDKF--MNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQ-PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLN 221 (289)
T ss_pred HHHh--cCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhC
Confidence 4433 5677777777777777777777777777776643 445555556665554444 4566777777776554
No 138
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.32 E-value=0.0036 Score=60.20 Aligned_cols=221 Identities=14% Similarity=0.071 Sum_probs=133.6
Q ss_pred cccCcHHHHHHHHHHHHhCCCCCChHhHHHHHHH--HHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhh
Q 010342 5 CGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHG--YCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVER 82 (512)
Q Consensus 5 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~ 82 (512)
...+++..|.+....+.+. .||. .|..++.+ +.+.|+.++|..+++.....+.. |..|+..+-.+|...++.++
T Consensus 20 ld~~qfkkal~~~~kllkk--~Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~ 95 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKK--HPNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDE 95 (932)
T ss_pred hhhHHHHHHHHHHHHHHHH--CCCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhH
Confidence 3567888899988888876 4554 34455555 45789999999888888765433 77788888889999999999
Q ss_pred HHHHHHHHHHHhhhcCCCCcchHhHHHHHHHHHccCChhH----HHHHHHhcCCCCCCCcchhHHHHHHHHHhc-CCh--
Q 010342 83 ANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNE----VFRIAEDMPQGKSVNEEFACGHMIDSLCRS-GRN-- 155 (512)
Q Consensus 83 a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~-- 155 (512)
+..+|+++... .|+..-...+..+|.+.+++.+ |.++++..++. ...+=+++...... ...
T Consensus 96 ~~~~Ye~~~~~-------~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~-----~yyfWsV~Slilqs~~~~~~ 163 (932)
T KOG2053|consen 96 AVHLYERANQK-------YPSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPKR-----AYYFWSVISLILQSIFSENE 163 (932)
T ss_pred HHHHHHHHHhh-------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcc-----cchHHHHHHHHHHhccCCcc
Confidence 99888887644 4444555566777777776654 55666644432 22333344443332 111
Q ss_pred -------hhHHHHHHHHHHcC-CCCCcchHHHHHHHHhccCchhHHHHHHHH-HHhCCCCCchhhHHHHHHHHhccCCHH
Q 010342 156 -------HGASRVVYVMRKRG-LTPSLVSYNSIVHGLCKHGGCMRAYQLLEE-GIQFGYLPSEHTYKVLVEGLCGESDLE 226 (512)
Q Consensus 156 -------~~a~~~~~~~~~~g-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~g~~~ 226 (512)
.-|.+.++.+.+.+ ..-+..-...-...+...|.+++|++++.. ..+.-..-+...-+.-+..+...+.+.
T Consensus 164 ~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~ 243 (932)
T KOG2053|consen 164 LLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQ 243 (932)
T ss_pred cccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChH
Confidence 12444555555443 111111112222334456778888888743 222222234444445566677777888
Q ss_pred HHHHHHHHHHhCCCC
Q 010342 227 KARKVLQFMLSKKDV 241 (512)
Q Consensus 227 ~a~~~~~~~~~~~~~ 241 (512)
+..++-.++..++..
T Consensus 244 ~l~~l~~~Ll~k~~D 258 (932)
T KOG2053|consen 244 ELFELSSRLLEKGND 258 (932)
T ss_pred HHHHHHHHHHHhCCc
Confidence 777777777765433
No 139
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.30 E-value=1.5e-06 Score=48.03 Aligned_cols=33 Identities=42% Similarity=0.837 Sum_probs=26.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 010342 458 CYNVVIDGACKLSMKREAYQILREMRKNGLNPD 490 (512)
Q Consensus 458 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~ 490 (512)
+|+.++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 677888888888888888888888888787776
No 140
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.30 E-value=1.6e-06 Score=47.98 Aligned_cols=34 Identities=38% Similarity=0.823 Sum_probs=32.4
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCh
Q 010342 31 SYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNS 64 (512)
Q Consensus 31 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~ 64 (512)
+||+++.+|++.|++++|.++|++|.+.|+.||.
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 7999999999999999999999999999999984
No 141
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.27 E-value=1.8e-06 Score=47.28 Aligned_cols=33 Identities=36% Similarity=0.735 Sum_probs=31.5
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC
Q 010342 30 VSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLP 62 (512)
Q Consensus 30 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~ 62 (512)
.+|+.++.+|++.|+++.|.++|+.|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 589999999999999999999999999999887
No 142
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.24 E-value=2.4e-06 Score=46.80 Aligned_cols=33 Identities=27% Similarity=0.530 Sum_probs=22.4
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 010342 457 VCYNVVIDGACKLSMKREAYQILREMRKNGLNP 489 (512)
Q Consensus 457 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p 489 (512)
.+|+.++.+|.+.|+++.|.+++++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 356667777777777777777777776666665
No 143
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.24 E-value=6e-05 Score=67.44 Aligned_cols=123 Identities=15% Similarity=0.097 Sum_probs=76.9
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhc
Q 010342 355 NAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRS 434 (512)
Q Consensus 355 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 434 (512)
..++..+...++++.|..+++++.+.. |+ ....++..+...++-.+|.+++.+.++.. +.+...+......|.+.
T Consensus 173 ~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k 247 (395)
T PF09295_consen 173 DTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSK 247 (395)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhc
Confidence 344555555666777777777766543 33 33345566666666667777776666443 44555666666667777
Q ss_pred CCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010342 435 GKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMR 483 (512)
Q Consensus 435 g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 483 (512)
++++.|..+.+++.... +-+..+|..|..+|.+.|+++.|+-.++.+.
T Consensus 248 ~~~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 248 KKYELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred CCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 77777777777776652 2244567777777777777777776666654
No 144
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.23 E-value=8.8e-05 Score=57.22 Aligned_cols=126 Identities=14% Similarity=0.076 Sum_probs=76.5
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCh---HhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCH--HhHHHH
Q 010342 353 TYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADS---TTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDN--YVYAAM 427 (512)
Q Consensus 353 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~l 427 (512)
.|..++..+ ..++...+...++.+.+.. +.+. ...-.+...+...|++++|...|+.+......++. .....|
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~L 91 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRL 91 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence 344444444 3667777777777777643 2221 22333446667777777888777777765422221 234446
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 010342 428 IKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREM 482 (512)
Q Consensus 428 ~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m 482 (512)
...+...|++++|...++..... ......+......+.+.|++++|...|+..
T Consensus 92 A~~~~~~~~~d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 66777778888887777653322 233445666777777788888887777653
No 145
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.22 E-value=0.0015 Score=60.77 Aligned_cols=371 Identities=12% Similarity=0.093 Sum_probs=186.5
Q ss_pred CCChhhHHHHHHHHHhcCChhhHHHHHHHHHHHhhhcCCCCcchHhHHH------HHHHHHccCChhHHHHHHHhcCCCC
Q 010342 61 LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFAN------LVDSLCREGYVNEVFRIAEDMPQGK 134 (512)
Q Consensus 61 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~------l~~~~~~~g~~~~a~~~~~~~~~~~ 134 (512)
.|.+..|..+.......-.++.|+..|-+. ..-.+++.-...-.. -...-.--|++++|.+++-++..++
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc----~dY~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drrD 764 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRC----GDYAGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRRD 764 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhh----ccccchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchhh
Confidence 577888877776666666666665543222 222222111110000 1122233588999999988877655
Q ss_pred CCCcchhHHHHHHHHHhcCChhhHHHHHHHHHHcCCC--CCcchHHHHHHHHhccCchhHHHHHHHHHHhCCCCCchhhH
Q 010342 135 SVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLT--PSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTY 212 (512)
Q Consensus 135 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~--p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 212 (512)
. .+..+.+.|++-...++++.--. +.. --...|+.+...++....|++|.+.|..-.. .
T Consensus 765 L---------Aielr~klgDwfrV~qL~r~g~~-d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~---------~ 825 (1189)
T KOG2041|consen 765 L---------AIELRKKLGDWFRVYQLIRNGGS-DDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD---------T 825 (1189)
T ss_pred h---------hHHHHHhhhhHHHHHHHHHccCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---------h
Confidence 3 67777888888777666643111 000 0124677777777777788888887765322 1
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhc
Q 010342 213 KVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKM 292 (512)
Q Consensus 213 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 292 (512)
...+.++.+..++++-+.+-+. .+.+....-.+..++...|.-++|.+.+-+.. .| ...+..|...
T Consensus 826 e~~~ecly~le~f~~LE~la~~-----Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s----~p-----kaAv~tCv~L 891 (1189)
T KOG2041|consen 826 ENQIECLYRLELFGELEVLART-----LPEDSELLPVMADMFTSVGMCDQAVEAYLRRS----LP-----KAAVHTCVEL 891 (1189)
T ss_pred HhHHHHHHHHHhhhhHHHHHHh-----cCcccchHHHHHHHHHhhchHHHHHHHHHhcc----Cc-----HHHHHHHHHH
Confidence 2355666666666665554433 34456677777888888888887776654321 11 1345667777
Q ss_pred CCHHHHHHHHHHHhhCCCCCCcHHHHHHH--------------HHHHhhcCCHHHHHHHHHhhccc---CCCCCChhhHH
Q 010342 293 GRIEEALKVLNDMVAGKFCAPDAVTFTTI--------------IFGLLNVGRIQEALNLLYQVMPQ---RGYSPGIVTYN 355 (512)
Q Consensus 293 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l--------------~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~ 355 (512)
++|.+|.++-+... .|...+..+- |..+.+.|..-+|.+++.++..+ .+.++-..--.
T Consensus 892 nQW~~avelaq~~~-----l~qv~tliak~aaqll~~~~~~eaIe~~Rka~~~~daarll~qmae~e~~K~~p~lr~Kkl 966 (1189)
T KOG2041|consen 892 NQWGEAVELAQRFQ-----LPQVQTLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQMAEREQEKYVPYLRLKKL 966 (1189)
T ss_pred HHHHHHHHHHHhcc-----chhHHHHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHHHhHHHhhccCCHHHHHHH
Confidence 78888877766554 3444333211 22233344444444444443211 11111111001
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcC
Q 010342 356 AVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSG 435 (512)
Q Consensus 356 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 435 (512)
.++.++ -..+..++.+-.+.....|...+... +...|-..++-++.+..- . -.....|..|..-....|
T Consensus 967 YVL~Al-LvE~h~~~ik~~~~~~~~g~~~dat~-------lles~~l~~~~ri~~n~W-r--gAEAyHFmilAQrql~eg 1035 (1189)
T KOG2041|consen 967 YVLGAL-LVENHRQTIKELRKIDKHGFLEDATD-------LLESGLLAEQSRILENTW-R--GAEAYHFMILAQRQLFEG 1035 (1189)
T ss_pred HHHHHH-HHHHHHHHHHHhhhhhhcCcchhhhh-------hhhhhhhhhHHHHHHhhh-h--hHHHHHHHHHHHHHHHhc
Confidence 111111 11122222222222222332211110 111122222222222111 0 112344555666666778
Q ss_pred CHHHHHHHHHHHHH-CCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 010342 436 KIHEAVHFLYELVD-SGVTPNIVCYNVVIDGACKLSMKREAYQILREMRK 484 (512)
Q Consensus 436 ~~~~a~~~~~~~~~-~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 484 (512)
.++.|.+.--.+.+ ..+-|....|+.+.-+.+....+...-+.|-++..
T Consensus 1036 ~v~~Al~Tal~L~DYEd~lpP~eiySllALaaca~raFGtCSKAfmkLe~ 1085 (1189)
T KOG2041|consen 1036 RVKDALQTALILSDYEDFLPPAEIYSLLALAACAVRAFGTCSKAFMKLEA 1085 (1189)
T ss_pred hHHHHHHHHhhhccHhhcCCHHHHHHHHHHHHhhhhhhhhhHHHHHHHHh
Confidence 88888776555544 24566777887776666655555555555544443
No 146
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=98.20 E-value=0.0037 Score=55.30 Aligned_cols=455 Identities=13% Similarity=0.122 Sum_probs=221.8
Q ss_pred cccCcHHHHHHHHHHHHhCCCCCChH------hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHH--Hh
Q 010342 5 CGLSRVGEAHKLFFDMKSRGHVPNVV------SYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGV--LR 76 (512)
Q Consensus 5 ~~~g~~~~A~~~~~~~~~~~~~~~~~------~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~--~~ 76 (512)
-+++++.+|.++|.++-+.- ..++. .-+.++++|.. ++.+.....+....+. .| ...|..+..+. .+
T Consensus 17 qkq~~~~esEkifskI~~e~-~~~~f~lkeEvl~grilnAffl-~nld~Me~~l~~l~~~--~~-~s~~l~LF~~L~~Y~ 91 (549)
T PF07079_consen 17 QKQKKFQESEKIFSKIYDEK-ESSPFLLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQQ--FG-KSAYLPLFKALVAYK 91 (549)
T ss_pred HHHhhhhHHHHHHHHHHHHh-hcchHHHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHHh--cC-CchHHHHHHHHHHHH
Confidence 46889999999999888762 21222 23567777754 4667777777766664 23 44566666554 45
Q ss_pred cCChhhHHHHHHHHHHHhhhcCCCCcchHh---------HHHHHHHHHccCChhHHHHHHHhcCCCCC----CCcchhHH
Q 010342 77 TRDVERANVLMFKLWERMKEEEDLSVNNAA---------FANLVDSLCREGYVNEVFRIAEDMPQGKS----VNEEFACG 143 (512)
Q Consensus 77 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~---------~~~l~~~~~~~g~~~~a~~~~~~~~~~~~----~~~~~~~~ 143 (512)
.+.+.+|.+.+.....+.......-.+... -+..+..+...|++.++..+++++...-. .-+..+|+
T Consensus 92 ~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd 171 (549)
T PF07079_consen 92 QKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYD 171 (549)
T ss_pred hhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHH
Confidence 788888888876666554333222222111 12233444555555555555555433222 13444444
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHc---CCCCCcchHHHHHHHHhccCchhHHHHHHHHHHhCCCCCchhhHHHHHHHHh
Q 010342 144 HMIDSLCRSGRNHGASRVVYVMRKR---GLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLC 220 (512)
Q Consensus 144 ~l~~~~~~~~~~~~a~~~~~~~~~~---g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 220 (512)
.++-.+++. .|-++++. .+-|+ |--++-.|.+. ...++...-..+.|.......++....
T Consensus 172 ~~vlmlsrS--------YfLEl~e~~s~dl~pd---yYemilfY~kk------i~~~d~~~Y~k~~peeeL~s~imqhlf 234 (549)
T PF07079_consen 172 RAVLMLSRS--------YFLELKESMSSDLYPD---YYEMILFYLKK------IHAFDQRPYEKFIPEEELFSTIMQHLF 234 (549)
T ss_pred HHHHHHhHH--------HHHHHHHhcccccChH---HHHHHHHHHHH------HHHHhhchHHhhCcHHHHHHHHHHHHH
Confidence 433333221 22222111 11111 11122121110 000000000012333333333333222
Q ss_pred cc--CCHHHHHHHHHHHHhCCCCCCcc-cHHHHHHHHHccCChhhHHHHHHHHHhcCCC----CChhhHHHHHHHHHhcC
Q 010342 221 GE--SDLEKARKVLQFMLSKKDVDRTR-ICNIYLRALCLIKNPTELLNVLVFMLQTQCQ----PDVITLNTVINGFCKMG 293 (512)
Q Consensus 221 ~~--g~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~ 293 (512)
-. ....--+++++.....-..|+.. +...+...+.. +.+++..+.+.+....+. .-..++..++....+.+
T Consensus 235 i~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~ 312 (549)
T PF07079_consen 235 IVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQV 312 (549)
T ss_pred hCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 11122233333333233333322 22233333333 455555444444333211 12346677777788888
Q ss_pred CHHHHHHHHHHHhhCCCCCCcHHHHH-------HHHHHHh-h---cCCHHHHHHHHHhhcccCCCCCCh-hhHHHHH---
Q 010342 294 RIEEALKVLNDMVAGKFCAPDAVTFT-------TIIFGLL-N---VGRIQEALNLLYQVMPQRGYSPGI-VTYNAVL--- 358 (512)
Q Consensus 294 ~~~~a~~~~~~~~~~~~~~~~~~~~~-------~l~~~~~-~---~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~--- 358 (512)
+...|.+.+.-+.... |+...-. .+-+..+ . .-+...=+.++.. .+.. ..|. .....++
T Consensus 313 ~T~~a~q~l~lL~~ld---p~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~-~qs~--DiDrqQLvh~L~~~A 386 (549)
T PF07079_consen 313 QTEEAKQYLALLKILD---PRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEE-IQSY--DIDRQQLVHYLVFGA 386 (549)
T ss_pred hHHHHHHHHHHHHhcC---CcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHH-HHhh--cccHHHHHHHHHHHH
Confidence 8888888877666432 2222111 1111111 0 1111222233322 2122 1121 1111222
Q ss_pred HHHHccCC-HHHHHHHHHHHHhCCCCCChHhHHHHH----HHHHh---cCCHHHHHHHHHHhhcCCCCC----CHHhHHH
Q 010342 359 RGLFRLRR-VEEAKEVFNCMLGIGVVADSTTYAIVI----DGLCE---SNQLDEAKRFWDDIVWPSNIH----DNYVYAA 426 (512)
Q Consensus 359 ~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~----~~~~~---~g~~~~a~~~~~~~~~~~~~~----~~~~~~~ 426 (512)
.-+-+.|. -++|..+++...+.. +-|..+-|.+. .+|.. ...+.+-..+-+-+.+.|++| +...-|.
T Consensus 387 k~lW~~g~~dekalnLLk~il~ft-~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~ 465 (549)
T PF07079_consen 387 KHLWEIGQCDEKALNLLKLILQFT-NYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANF 465 (549)
T ss_pred HHHHhcCCccHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHH
Confidence 23344555 788999999888742 23333333322 22322 234444455555555667665 3345555
Q ss_pred HHHH--HHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHH
Q 010342 427 MIKG--LCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497 (512)
Q Consensus 427 l~~~--~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l 497 (512)
|.++ +..+|++.++.-.-..+.+ +.|++.+|..+.-+.....++++|..++.. ++|+..+++.=
T Consensus 466 LaDAEyLysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~-----LP~n~~~~dsk 531 (549)
T PF07079_consen 466 LADAEYLYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQK-----LPPNERMRDSK 531 (549)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHh-----CCCchhhHHHH
Confidence 5544 5578999988766555554 578999999999999999999999999876 57777777643
No 147
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.15 E-value=8.9e-05 Score=66.34 Aligned_cols=125 Identities=14% Similarity=0.165 Sum_probs=98.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhhcccCCCCCChhhHHHHHHH
Q 010342 281 TLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360 (512)
Q Consensus 281 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 360 (512)
....++..+...++++.|+.+|+++.+.. |+ ....++..+...++..+|++++.+.+... +.+...+..-...
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~---pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~--p~d~~LL~~Qa~f 243 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRERD---PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN--PQDSELLNLQAEF 243 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhcC---Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC--CCCHHHHHHHHHH
Confidence 34556677777889999999999998753 44 34557778888888899999999887543 4455666666777
Q ss_pred HHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhh
Q 010342 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIV 413 (512)
Q Consensus 361 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 413 (512)
+.+.++++.|..+.+++.+.. |.+-.+|..|..+|...|+++.|+..++.+.
T Consensus 244 Ll~k~~~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 244 LLSKKKYELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHhcCCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 889999999999999998863 4455589999999999999999999888774
No 148
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.12 E-value=0.00021 Score=55.08 Aligned_cols=117 Identities=15% Similarity=0.045 Sum_probs=58.9
Q ss_pred cCCHHHHHHHHHhhcccCCCCC-ChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCh--HhHHHHHHHHHhcCCHHH
Q 010342 328 VGRIQEALNLLYQVMPQRGYSP-GIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADS--TTYAIVIDGLCESNQLDE 404 (512)
Q Consensus 328 ~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~ 404 (512)
.++...+...+..+....+-.+ .......+...+...|++++|...|+.+......|+. .....|...+...|++++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~ 103 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE 103 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 4555555555555433321110 0122223344555666666666666666664311211 123334556666666666
Q ss_pred HHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHH
Q 010342 405 AKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYE 446 (512)
Q Consensus 405 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 446 (512)
|...++..... ......+....+.|.+.|+.++|...|++
T Consensus 104 Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 104 ALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 66666553322 22334455566666666666666666654
No 149
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.07 E-value=0.00021 Score=53.09 Aligned_cols=98 Identities=11% Similarity=-0.007 Sum_probs=59.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHhhcCCC--CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--ChhhHHHHH
Q 010342 388 TYAIVIDGLCESNQLDEAKRFWDDIVWPSN--IHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTP--NIVCYNVVI 463 (512)
Q Consensus 388 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p--~~~~~~~l~ 463 (512)
++..++..+.+.|++++|...+..+..... +.....+..+..++.+.|++++|...++.+....... ....+..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 344555566666777777777766654321 1112345556667777777777777777766542221 234566666
Q ss_pred HHHHhcCCHHHHHHHHHHHHHC
Q 010342 464 DGACKLSMKREAYQILREMRKN 485 (512)
Q Consensus 464 ~~~~~~g~~~~a~~~~~~m~~~ 485 (512)
.++.+.|++++|.+.++++.+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHH
Confidence 6677777777777777777664
No 150
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.05 E-value=0.00011 Score=52.08 Aligned_cols=94 Identities=15% Similarity=0.118 Sum_probs=57.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh
Q 010342 389 YAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACK 468 (512)
Q Consensus 389 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 468 (512)
+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.+.++...+.. +.+..++..+...+..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 80 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHH
Confidence 3445555666666777777666665443 3333555666666666677777777776666553 2233456666666777
Q ss_pred cCCHHHHHHHHHHHHH
Q 010342 469 LSMKREAYQILREMRK 484 (512)
Q Consensus 469 ~g~~~~a~~~~~~m~~ 484 (512)
.|++++|...++...+
T Consensus 81 ~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 81 LGKYEEALEAYEKALE 96 (100)
T ss_pred HHhHHHHHHHHHHHHc
Confidence 7777777777666654
No 151
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.04 E-value=0.001 Score=57.95 Aligned_cols=54 Identities=11% Similarity=0.139 Sum_probs=26.7
Q ss_pred HHhcc-CchhHHHHHHHHHHhC----CCCC--chhhHHHHHHHHhccCCHHHHHHHHHHHHh
Q 010342 183 GLCKH-GGCMRAYQLLEEGIQF----GYLP--SEHTYKVLVEGLCGESDLEKARKVLQFMLS 237 (512)
Q Consensus 183 ~~~~~-~~~~~a~~~~~~~~~~----~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 237 (512)
.|... |+++.|.+.|+++.+. + .+ -..++..+...+.+.|++++|.++|+++..
T Consensus 123 ~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~ 183 (282)
T PF14938_consen 123 IYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAK 183 (282)
T ss_dssp HHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 34444 5666666666655432 1 11 123444555566666666666666666554
No 152
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=98.02 E-value=0.0001 Score=66.35 Aligned_cols=123 Identities=12% Similarity=0.189 Sum_probs=82.7
Q ss_pred CCcHHHHHHHHHHHhhcCCHHHHHHHHHhhcccC-CCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHH
Q 010342 312 APDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQR-GYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYA 390 (512)
Q Consensus 312 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 390 (512)
+.+......++..+....+.+.+..++.+..... ....-+.|..++++.|...|..+.+..+++.=...|+-||..+++
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n 142 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN 142 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence 4566666777777777777777777776643322 122234455677787888888888888777777777788888888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhc
Q 010342 391 IVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRS 434 (512)
Q Consensus 391 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 434 (512)
.|++.+.+.|++..|.++...|...+...+..++..-+.+|.+.
T Consensus 143 ~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 143 LLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 88888888888888877777776555555555555444444443
No 153
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.02 E-value=0.0002 Score=64.44 Aligned_cols=92 Identities=10% Similarity=-0.021 Sum_probs=69.6
Q ss_pred HHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCH
Q 010342 358 LRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKI 437 (512)
Q Consensus 358 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 437 (512)
...+...|+++.|+..|+++++.. +.+...|..+..+|...|++++|...+++++... +.+...|..+..+|...|++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCH
Confidence 445567788888888888888754 4566677777788888888888888888887664 45666777778888888888
Q ss_pred HHHHHHHHHHHHCC
Q 010342 438 HEAVHFLYELVDSG 451 (512)
Q Consensus 438 ~~a~~~~~~~~~~~ 451 (512)
++|...|++.++.+
T Consensus 87 ~eA~~~~~~al~l~ 100 (356)
T PLN03088 87 QTAKAALEKGASLA 100 (356)
T ss_pred HHHHHHHHHHHHhC
Confidence 88888888887753
No 154
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.98 E-value=3.5e-05 Score=53.63 Aligned_cols=84 Identities=13% Similarity=0.372 Sum_probs=49.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCC-CCChhhHHHHHHHHHhcC----ChhhHHHHHHHHHHHhhhcCCCCcchHh
Q 010342 32 YTTLIHGYCRTGEMDVAYKVFDEMRHCGV-LPNSLTYSVLVRGVLRTR----DVERANVLMFKLWERMKEEEDLSVNNAA 106 (512)
Q Consensus 32 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-~~~~~~~~~l~~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 106 (512)
-..-|..+...+++...-.+|+.+++.|+ .|+..+|+.++.+..+.. +.+...--+..+++.+-.. .+.|+..+
T Consensus 28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~-~lKP~~et 106 (120)
T PF08579_consen 28 QIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSN-KLKPNDET 106 (120)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHh-ccCCcHHH
Confidence 34455555556777777777777777777 677777777776665422 2332222222233333222 57777777
Q ss_pred HHHHHHHHHc
Q 010342 107 FANLVDSLCR 116 (512)
Q Consensus 107 ~~~l~~~~~~ 116 (512)
|+.++..+.+
T Consensus 107 Ynivl~~Llk 116 (120)
T PF08579_consen 107 YNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHH
Confidence 7777766654
No 155
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.95 E-value=0.00023 Score=61.59 Aligned_cols=129 Identities=12% Similarity=0.087 Sum_probs=65.7
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHh-cCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHH
Q 010342 353 TYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCE-SNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGL 431 (512)
Q Consensus 353 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 431 (512)
+|..+++..-+.+..+.|..+|.+..+.+ ..+..+|......-.. .++.+.|..+|+...+. ++.+...|...++-+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 34455555555555666666666665432 2233334333333222 34445566666665543 344555566666666
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCh---hhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 010342 432 CRSGKIHEAVHFLYELVDSGVTPNI---VCYNVVIDGACKLSMKREAYQILREMRK 484 (512)
Q Consensus 432 ~~~g~~~~a~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 484 (512)
...|+.+.|..+|++.+.. +.++. ..|...+.-=.+.|+.+.+.++.+++.+
T Consensus 81 ~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 81 IKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 6666666666666665543 12221 3566666666666666666666666655
No 156
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.95 E-value=0.00018 Score=50.87 Aligned_cols=95 Identities=14% Similarity=0.153 Sum_probs=63.4
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHh
Q 010342 354 YNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCR 433 (512)
Q Consensus 354 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 433 (512)
+..+...+...|++++|...+++..+.. +.+...+..+...+...+++++|.+.++...... +.+..++..+...+..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 80 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHH
Confidence 3445556666777777777777776643 3344566667777777777777777777776543 3344566777777777
Q ss_pred cCCHHHHHHHHHHHHHC
Q 010342 434 SGKIHEAVHFLYELVDS 450 (512)
Q Consensus 434 ~g~~~~a~~~~~~~~~~ 450 (512)
.|++++|...+....+.
T Consensus 81 ~~~~~~a~~~~~~~~~~ 97 (100)
T cd00189 81 LGKYEEALEAYEKALEL 97 (100)
T ss_pred HHhHHHHHHHHHHHHcc
Confidence 77777777777776553
No 157
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.95 E-value=0.00017 Score=64.93 Aligned_cols=124 Identities=10% Similarity=0.080 Sum_probs=91.8
Q ss_pred CCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhC--CCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHh
Q 010342 346 GYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGI--GVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYV 423 (512)
Q Consensus 346 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 423 (512)
+.+.+...+..++..+....+.+.+..++.+.... ....-..|..++++.|...|..+.+..+++.=...|+-||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 33556667777777777777788888888777764 2222334556888888888888888888888888888888888
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhc
Q 010342 424 YAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKL 469 (512)
Q Consensus 424 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 469 (512)
++.|++.+.+.|++..|.++...|...+...++.|+..-+.+|.+.
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 8888888888888888888888887776666666766666666654
No 158
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.94 E-value=0.00078 Score=56.49 Aligned_cols=112 Identities=12% Similarity=0.057 Sum_probs=84.1
Q ss_pred CCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCCChhhH
Q 010342 383 VADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSG---KIHEAVHFLYELVDSGVTPNIVCY 459 (512)
Q Consensus 383 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~~~p~~~~~ 459 (512)
+-|...|..|...|...|+.+.|..-|.+..+.. +++...+..+..++..+. ...++..+|++++... +-|+...
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~iral 230 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRAL 230 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHHH
Confidence 6677888888888888888888888888887764 667777777777766543 3567888888888775 3367777
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHH
Q 010342 460 NVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILD 498 (512)
Q Consensus 460 ~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~ 498 (512)
..|...+...|++.+|...|+.|.+. -|....++.++
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~--lp~~~~rr~~i 267 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDL--LPADDPRRSLI 267 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhc--CCCCCchHHHH
Confidence 78888888888888888888888874 34444455544
No 159
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.94 E-value=0.0018 Score=56.47 Aligned_cols=157 Identities=15% Similarity=0.044 Sum_probs=86.0
Q ss_pred HHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhhcccCCCCCChhhH---HHH-------
Q 010342 288 GFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTY---NAV------- 357 (512)
Q Consensus 288 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~---~~l------- 357 (512)
++.-.|+.++|.++--...+.. ..+....-.-..++...++.+.|...|.+.+.. .|+...- ...
T Consensus 178 cl~~~~~~~~a~~ea~~ilkld--~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~l---dpdh~~sk~~~~~~k~le~~ 252 (486)
T KOG0550|consen 178 CLAFLGDYDEAQSEAIDILKLD--ATNAEALYVRGLCLYYNDNADKAINHFQQALRL---DPDHQKSKSASMMPKKLEVK 252 (486)
T ss_pred hhhhcccchhHHHHHHHHHhcc--cchhHHHHhcccccccccchHHHHHHHhhhhcc---ChhhhhHHhHhhhHHHHHHH
Confidence 4455566666666665555443 223332222233344556666666666664422 2332111 111
Q ss_pred ---HHHHHccCCHHHHHHHHHHHHhC---CCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHH
Q 010342 358 ---LRGLFRLRRVEEAKEVFNCMLGI---GVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGL 431 (512)
Q Consensus 358 ---~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 431 (512)
..-..+.|++..|.+.|.+.+.. ...++...|.....+..+.|+.++|+.-.++..+.+ +.-...+..-..++
T Consensus 253 k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD-~syikall~ra~c~ 331 (486)
T KOG0550|consen 253 KERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKID-SSYIKALLRRANCH 331 (486)
T ss_pred HhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcC-HHHHHHHHHHHHHH
Confidence 12235677788888888777763 234445556666667777788888887777775432 11111222333445
Q ss_pred HhcCCHHHHHHHHHHHHHC
Q 010342 432 CRSGKIHEAVHFLYELVDS 450 (512)
Q Consensus 432 ~~~g~~~~a~~~~~~~~~~ 450 (512)
...+++++|.+-+++..+.
T Consensus 332 l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 332 LALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 5567778888777777654
No 160
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.94 E-value=1.5e-05 Score=42.37 Aligned_cols=29 Identities=41% Similarity=0.781 Sum_probs=19.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 010342 458 CYNVVIDGACKLSMKREAYQILREMRKNG 486 (512)
Q Consensus 458 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 486 (512)
+|+.++++|++.|++++|.+++++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 56666666666666666666666666655
No 161
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.93 E-value=0.00011 Score=51.24 Aligned_cols=78 Identities=15% Similarity=0.300 Sum_probs=58.4
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHcCC-CCCcchHHHHHHHHhccC--------chhHHHHHHHHHHhCCCCCchhhHHH
Q 010342 144 HMIDSLCRSGRNHGASRVVYVMRKRGL-TPSLVSYNSIVHGLCKHG--------GCMRAYQLLEEGIQFGYLPSEHTYKV 214 (512)
Q Consensus 144 ~l~~~~~~~~~~~~a~~~~~~~~~~g~-~p~~~~~~~l~~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~~~ 214 (512)
..|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. ..-+.+.+|+.|+..+++|+..+|+.
T Consensus 30 ~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYni 109 (120)
T PF08579_consen 30 DNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNI 109 (120)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHH
Confidence 345556666888888888888888888 788888888887776532 24457788888888888888888888
Q ss_pred HHHHHhc
Q 010342 215 LVEGLCG 221 (512)
Q Consensus 215 l~~~~~~ 221 (512)
++..+.+
T Consensus 110 vl~~Llk 116 (120)
T PF08579_consen 110 VLGSLLK 116 (120)
T ss_pred HHHHHHH
Confidence 8876643
No 162
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.93 E-value=1.4e-05 Score=42.51 Aligned_cols=31 Identities=52% Similarity=1.078 Sum_probs=28.2
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 010342 30 VSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60 (512)
Q Consensus 30 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~ 60 (512)
.+|+.++++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 3799999999999999999999999998764
No 163
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.93 E-value=0.00079 Score=56.13 Aligned_cols=94 Identities=13% Similarity=0.188 Sum_probs=54.3
Q ss_pred HccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHH
Q 010342 362 FRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAV 441 (512)
Q Consensus 362 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 441 (512)
.+.+++.+|...|.+.++.. +-|.+.|..-..+|.+.|.++.|.+-.+..+..+ +....+|..|..+|...|++++|+
T Consensus 92 m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A~~~~gk~~~A~ 169 (304)
T KOG0553|consen 92 MKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLAYLALGKYEEAI 169 (304)
T ss_pred HHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHccCcHHHHH
Confidence 44556666666666666643 3455555555666666666666666666665543 334446666666666666666666
Q ss_pred HHHHHHHHCCCCCChhhH
Q 010342 442 HFLYELVDSGVTPNIVCY 459 (512)
Q Consensus 442 ~~~~~~~~~~~~p~~~~~ 459 (512)
+.|++.++. .|+-.+|
T Consensus 170 ~aykKaLel--dP~Ne~~ 185 (304)
T KOG0553|consen 170 EAYKKALEL--DPDNESY 185 (304)
T ss_pred HHHHhhhcc--CCCcHHH
Confidence 666665553 4443333
No 164
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.87 E-value=0.00069 Score=51.27 Aligned_cols=91 Identities=11% Similarity=0.005 Sum_probs=47.3
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCC
Q 010342 357 VLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGK 436 (512)
Q Consensus 357 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 436 (512)
+..-+...|++++|..+|+-+.... +-+..-|-.|..++-..|++++|+..|......+ +.|...+-.+..++...|+
T Consensus 41 ~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L~lG~ 118 (157)
T PRK15363 41 YAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYLACDN 118 (157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHcCC
Confidence 3333445555555555555555433 2333444555555555555555555555555444 3444455555555555555
Q ss_pred HHHHHHHHHHHHH
Q 010342 437 IHEAVHFLYELVD 449 (512)
Q Consensus 437 ~~~a~~~~~~~~~ 449 (512)
.+.|.+.|+..+.
T Consensus 119 ~~~A~~aF~~Ai~ 131 (157)
T PRK15363 119 VCYAIKALKAVVR 131 (157)
T ss_pred HHHHHHHHHHHHH
Confidence 5555555555443
No 165
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.86 E-value=0.0052 Score=53.58 Aligned_cols=171 Identities=13% Similarity=0.097 Sum_probs=96.9
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCC---CC--hhhHHHHHHHHHhcCChhhHHHHHHHHHHHhhhcCCCCcchH
Q 010342 31 SYTTLIHGYCRTGEMDVAYKVFDEMRHCGVL---PN--SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNA 105 (512)
Q Consensus 31 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~---~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 105 (512)
.|......|-..+++++|.+.|.+....... +. ...|.....++. ..+++.|...+.+
T Consensus 37 ~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k-~~~~~~Ai~~~~~---------------- 99 (282)
T PF14938_consen 37 LYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYK-KGDPDEAIECYEK---------------- 99 (282)
T ss_dssp HHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH-HTTHHHHHHHHHH----------------
T ss_pred HHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-hhCHHHHHHHHHH----------------
Confidence 4666677777778888888777776432110 10 112222333332 2355555554444
Q ss_pred hHHHHHHHHHccCChhHHHHHHHhcCCCCCCCcchhHHHHHHHHHhc-CChhhHHHHHHHHHH----cCCCC--CcchHH
Q 010342 106 AFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRS-GRNHGASRVVYVMRK----RGLTP--SLVSYN 178 (512)
Q Consensus 106 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~----~g~~p--~~~~~~ 178 (512)
.+..|...|++..|-+.+.. +...|... |+++.|.+.|+...+ .| .+ -..++.
T Consensus 100 ----A~~~y~~~G~~~~aA~~~~~---------------lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~ 159 (282)
T PF14938_consen 100 ----AIEIYREAGRFSQAAKCLKE---------------LAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLL 159 (282)
T ss_dssp ----HHHHHHHCT-HHHHHHHHHH---------------HHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHH
T ss_pred ----HHHHHHhcCcHHHHHHHHHH---------------HHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHH
Confidence 45556666666666554443 45556566 677777777766543 22 11 123566
Q ss_pred HHHHHHhccCchhHHHHHHHHHHhCCCC-----Cchh-hHHHHHHHHhccCCHHHHHHHHHHHHhC
Q 010342 179 SIVHGLCKHGGCMRAYQLLEEGIQFGYL-----PSEH-TYKVLVEGLCGESDLEKARKVLQFMLSK 238 (512)
Q Consensus 179 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 238 (512)
.+...+.+.|++++|.++|++....... .+.. .+...+-++...||+..|.+.++.....
T Consensus 160 ~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~ 225 (282)
T PF14938_consen 160 KAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQ 225 (282)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTT
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 7777888899999999999988764322 1222 2333444667788999999999988754
No 166
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.85 E-value=0.0011 Score=62.37 Aligned_cols=143 Identities=15% Similarity=0.018 Sum_probs=86.0
Q ss_pred CCChhhHHHHHHHHHcc-----CCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhc--------CCHHHHHHHHHHhhc
Q 010342 348 SPGIVTYNAVLRGLFRL-----RRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCES--------NQLDEAKRFWDDIVW 414 (512)
Q Consensus 348 ~~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------g~~~~a~~~~~~~~~ 414 (512)
+.+...|...+++.... ++...|..+|++..+.. |.....+..+..++... .++..+.+..++...
T Consensus 334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ld-P~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~a 412 (517)
T PRK10153 334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSE-PDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVA 412 (517)
T ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhh
Confidence 45666666666654332 22557777777777653 22333444443333221 122333444444332
Q ss_pred C-CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHH
Q 010342 415 P-SNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVT 493 (512)
Q Consensus 415 ~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~ 493 (512)
. ..+.+...+.++.-.+...|++++|...+++..+.+ |+...|..+...+...|+.++|.+.+++... +.|...|
T Consensus 413 l~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~--L~P~~pt 488 (517)
T PRK10153 413 LPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFN--LRPGENT 488 (517)
T ss_pred cccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCCch
Confidence 2 123445667777666667788888888888888764 5677788888888888888888888888766 4565555
Q ss_pred HH
Q 010342 494 WR 495 (512)
Q Consensus 494 ~~ 495 (512)
|.
T Consensus 489 ~~ 490 (517)
T PRK10153 489 LY 490 (517)
T ss_pred HH
Confidence 43
No 167
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.85 E-value=0.00049 Score=52.06 Aligned_cols=94 Identities=9% Similarity=-0.082 Sum_probs=61.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh
Q 010342 389 YAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACK 468 (512)
Q Consensus 389 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 468 (512)
.-.+...+...|++++|.++|+-+...+ +.+..-|..|.-++-..|++++|+..|.......+ -|+..+-.+..++..
T Consensus 38 lY~~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c~L~ 115 (157)
T PRK15363 38 LYRYAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAECYLA 115 (157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHHHH
Confidence 3444455566777777777777766544 44555566666667677777777777777766653 356666677777777
Q ss_pred cCCHHHHHHHHHHHHH
Q 010342 469 LSMKREAYQILREMRK 484 (512)
Q Consensus 469 ~g~~~~a~~~~~~m~~ 484 (512)
.|+.+.|.+-|+..+.
T Consensus 116 lG~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 116 CDNVCYAIKALKAVVR 131 (157)
T ss_pred cCCHHHHHHHHHHHHH
Confidence 7777777777776654
No 168
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.84 E-value=2.5e-05 Score=53.63 Aligned_cols=81 Identities=19% Similarity=0.182 Sum_probs=57.2
Q ss_pred cCcHHHHHHHHHHHHhCCCC-CChHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhhHHH
Q 010342 7 LSRVGEAHKLFFDMKSRGHV-PNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANV 85 (512)
Q Consensus 7 ~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 85 (512)
+|+++.|+.+|+++.+..+. |+...+..+..++.+.|++++|..++++ .+.+ +.+......+..++.+.|++++|+.
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~-~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD-PSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH-HCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC-CCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 68899999999999987442 2445566688999999999999999988 3221 1233444455678888888888887
Q ss_pred HHHH
Q 010342 86 LMFK 89 (512)
Q Consensus 86 ~~~~ 89 (512)
.+.+
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 7654
No 169
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.84 E-value=3.7e-05 Score=52.77 Aligned_cols=81 Identities=15% Similarity=0.194 Sum_probs=44.3
Q ss_pred cCCHHHHHHHHHHhhcCCCC-CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 010342 399 SNQLDEAKRFWDDIVWPSNI-HDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQ 477 (512)
Q Consensus 399 ~g~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~ 477 (512)
.|+++.|..+++++.+.... ++...+..+..+|.+.|++++|..++++ .+.+. .+......+..++.+.|++++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~-~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDP-SNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHH-CHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCC-CCHHHHHHHHHHHHHhCCHHHHHH
Confidence 35666666666666654321 1333444466667777777777777666 22221 122333445666667777777776
Q ss_pred HHHH
Q 010342 478 ILRE 481 (512)
Q Consensus 478 ~~~~ 481 (512)
.+++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 6654
No 170
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.82 E-value=0.00073 Score=60.86 Aligned_cols=93 Identities=12% Similarity=0.002 Sum_probs=72.5
Q ss_pred HHHHHhhcCCHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcC
Q 010342 321 IIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESN 400 (512)
Q Consensus 321 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 400 (512)
-...+...|++++|+..|.+.+... +.+...|..+..+|...|++++|+..++++.+.. +.+...|..+..+|...|
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~~--P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDLD--PNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhC
Confidence 3456677888888888888877554 4456677777888888888888888888888764 456667888888888888
Q ss_pred CHHHHHHHHHHhhcCC
Q 010342 401 QLDEAKRFWDDIVWPS 416 (512)
Q Consensus 401 ~~~~a~~~~~~~~~~~ 416 (512)
++++|...|+++++.+
T Consensus 85 ~~~eA~~~~~~al~l~ 100 (356)
T PLN03088 85 EYQTAKAALEKGASLA 100 (356)
T ss_pred CHHHHHHHHHHHHHhC
Confidence 8888888888887654
No 171
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.82 E-value=0.0006 Score=54.24 Aligned_cols=60 Identities=8% Similarity=-0.062 Sum_probs=25.4
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhCCCCC--ChHhHHHHHHHHHhcCCHHHHHHHHHHhh
Q 010342 354 YNAVLRGLFRLRRVEEAKEVFNCMLGIGVVA--DSTTYAIVIDGLCESNQLDEAKRFWDDIV 413 (512)
Q Consensus 354 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 413 (512)
+..+...+...|++++|...|++.......+ ...++..+..++...|++++|...+++..
T Consensus 38 ~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al 99 (168)
T CHL00033 38 YYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQAL 99 (168)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3333444444444555555444444321111 11234444444444444444444444444
No 172
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.81 E-value=0.00092 Score=49.60 Aligned_cols=96 Identities=14% Similarity=0.059 Sum_probs=38.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhCCCC-CCcHHHHHHHHHHHhhcCCHHHHHHHHHhhcccCCCCC-ChhhHHHHHHHH
Q 010342 284 TVINGFCKMGRIEEALKVLNDMVAGKFC-APDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSP-GIVTYNAVLRGL 361 (512)
Q Consensus 284 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~ 361 (512)
.+...+.+.|++++|...|..+...... +.....+..+..++...|+++.|...+.+.....+-.+ ....+..+..++
T Consensus 7 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 86 (119)
T TIGR02795 7 DAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSL 86 (119)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHH
Confidence 3344444445555555555554432210 00122333344444444555555554444332221111 122333344444
Q ss_pred HccCCHHHHHHHHHHHHh
Q 010342 362 FRLRRVEEAKEVFNCMLG 379 (512)
Q Consensus 362 ~~~~~~~~a~~~~~~~~~ 379 (512)
.+.|+.++|...++++.+
T Consensus 87 ~~~~~~~~A~~~~~~~~~ 104 (119)
T TIGR02795 87 QELGDKEKAKATLQQVIK 104 (119)
T ss_pred HHhCChHHHHHHHHHHHH
Confidence 444444444444444444
No 173
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.80 E-value=0.0015 Score=52.17 Aligned_cols=84 Identities=11% Similarity=-0.028 Sum_probs=40.3
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC--hHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHH
Q 010342 354 YNAVLRGLFRLRRVEEAKEVFNCMLGIGVVAD--STTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGL 431 (512)
Q Consensus 354 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 431 (512)
+..+...+...|++++|...|++..+....+. ...+..+..++.+.|++++|...+++..... +.+...+..+..++
T Consensus 38 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 116 (172)
T PRK02603 38 YYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNIAVIY 116 (172)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 44444455555556666555555554321111 2344555555555555555555555555432 22333444444455
Q ss_pred HhcCCHH
Q 010342 432 CRSGKIH 438 (512)
Q Consensus 432 ~~~g~~~ 438 (512)
...|+..
T Consensus 117 ~~~g~~~ 123 (172)
T PRK02603 117 HKRGEKA 123 (172)
T ss_pred HHcCChH
Confidence 4444433
No 174
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.79 E-value=0.015 Score=54.57 Aligned_cols=65 Identities=17% Similarity=0.214 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 010342 315 AVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLG 379 (512)
Q Consensus 315 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 379 (512)
...|-.+.+-....|..+.|+..--..-.-..+-|-...|+.+.-+.+..+.+...-+.|-++..
T Consensus 1021 AyHFmilAQrql~eg~v~~Al~Tal~L~DYEd~lpP~eiySllALaaca~raFGtCSKAfmkLe~ 1085 (1189)
T KOG2041|consen 1021 AYHFMILAQRQLFEGRVKDALQTALILSDYEDFLPPAEIYSLLALAACAVRAFGTCSKAFMKLEA 1085 (1189)
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHhhhccHhhcCCHHHHHHHHHHHHhhhhhhhhhHHHHHHHHh
Confidence 34444555555666777777665433222223345555666555555555555544444444443
No 175
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.79 E-value=5.9e-05 Score=49.31 Aligned_cols=64 Identities=20% Similarity=0.227 Sum_probs=52.0
Q ss_pred cccCcHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHH
Q 010342 5 CGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLV 71 (512)
Q Consensus 5 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~ 71 (512)
++.|++++|++.|+.+.+..+. +...+..++.+|.+.|++++|..+++++... .|+...|..++
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~--~~~~~~~~~l~ 65 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPD-NPEARLLLAQCYLKQGQYDEAEELLERLLKQ--DPDNPEYQQLL 65 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTT-SHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG--GTTHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCHHHHHHHH
Confidence 5789999999999999988444 7888889999999999999999999999886 46655554443
No 176
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.76 E-value=0.0096 Score=50.29 Aligned_cols=64 Identities=9% Similarity=0.050 Sum_probs=35.6
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChh-hH---HHHHHHHHhcCChhhHHHHHHHHHHHhhhc
Q 010342 32 YTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSL-TY---SVLVRGVLRTRDVERANVLMFKLWERMKEE 97 (512)
Q Consensus 32 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~-~~---~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 97 (512)
+-.....+...|++++|.+.|+++.... |+.. .. -.+..++.+.++++.|...++++++..|..
T Consensus 35 ~Y~~A~~~~~~g~y~~Ai~~f~~l~~~y--P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~ 102 (243)
T PRK10866 35 IYATAQQKLQDGNWKQAITQLEALDNRY--PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTH 102 (243)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCC
Confidence 3344445556667777777777766642 3221 11 234455566666666666666666655543
No 177
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.75 E-value=0.0027 Score=53.59 Aligned_cols=55 Identities=15% Similarity=0.089 Sum_probs=43.8
Q ss_pred ccccCcHHHHHHHHHHHHhCCCCCChHh---HHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 010342 4 LCGLSRVGEAHKLFFDMKSRGHVPNVVS---YTTLIHGYCRTGEMDVAYKVFDEMRHCG 59 (512)
Q Consensus 4 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~a~~~~~~m~~~~ 59 (512)
+.+.|++++|++.|+.+.+.-+.+ ..+ .-.++.++.+.+++++|...+++..+..
T Consensus 42 ~~~~g~y~~Ai~~f~~l~~~yP~s-~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~ 99 (243)
T PRK10866 42 KLQDGNWKQAITQLEALDNRYPFG-PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN 99 (243)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Confidence 356799999999999999874332 222 2456778899999999999999998864
No 178
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.74 E-value=0.0023 Score=51.06 Aligned_cols=88 Identities=9% Similarity=-0.034 Sum_probs=41.9
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHhhcccCCCCCC-hhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHH
Q 010342 316 VTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPG-IVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVID 394 (512)
Q Consensus 316 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 394 (512)
..+..+...+...|++++|...|.+.+....-.++ ...+..+...+.+.|++++|...+++..+.. +.+...+..+..
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 114 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHH
Confidence 33444455555555666665555554432211111 2344455555555566666665555555532 223334444445
Q ss_pred HHHhcCCHHH
Q 010342 395 GLCESNQLDE 404 (512)
Q Consensus 395 ~~~~~g~~~~ 404 (512)
++...|+...
T Consensus 115 ~~~~~g~~~~ 124 (172)
T PRK02603 115 IYHKRGEKAE 124 (172)
T ss_pred HHHHcCChHh
Confidence 5555444333
No 179
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.74 E-value=0.012 Score=45.54 Aligned_cols=127 Identities=12% Similarity=0.160 Sum_probs=57.6
Q ss_pred CcHHHHHHHHHHHhhcCCHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCC-CCChHhHHH
Q 010342 313 PDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGV-VADSTTYAI 391 (512)
Q Consensus 313 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~ 391 (512)
|+......+..+..+.|+..+|...|.+.+ ..-+..|......+.++....+++..|...++++-+... .-++.+.-.
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qal-sG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll 165 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQAL-SGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLL 165 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHh-ccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHH
Confidence 444444445555555555555555555533 222233444444555555555555555555555544220 001222334
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHH
Q 010342 392 VIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVH 442 (512)
Q Consensus 392 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 442 (512)
+.+.+...|....|+.-|+..... .|+...-......+.++|+.+++..
T Consensus 166 ~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~a 214 (251)
T COG4700 166 FARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANA 214 (251)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHH
Confidence 445555555555555555555432 2333333333334444554444433
No 180
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.73 E-value=0.0026 Score=53.47 Aligned_cols=113 Identities=12% Similarity=0.070 Sum_probs=86.2
Q ss_pred CCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcC---CHHHHHHHHHHhhcCCCCCCHHhH
Q 010342 348 SPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESN---QLDEAKRFWDDIVWPSNIHDNYVY 424 (512)
Q Consensus 348 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~ 424 (512)
+-|...|..|..+|...|+++.|..-|....+.. ++++..+..+..++.... ...++..++++++..+ +.|..+.
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~iral 230 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRAL 230 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHHH
Confidence 5677888888899999999999999998888853 567777777776665443 4567888999988765 6677788
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHH
Q 010342 425 AAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVID 464 (512)
Q Consensus 425 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 464 (512)
..|...+...|++.+|...|+.|.+.. |....+..++.
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~l--p~~~~rr~~ie 268 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDLL--PADDPRRSLIE 268 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcC--CCCCchHHHHH
Confidence 888888889999999999999998874 33334444443
No 181
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.72 E-value=0.00083 Score=58.23 Aligned_cols=128 Identities=11% Similarity=0.075 Sum_probs=55.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHH-HhhcCCHHHHHHHHHhhcccCCCCCChhhHHHHHH
Q 010342 281 TLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFG-LLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLR 359 (512)
Q Consensus 281 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 359 (512)
+|..+++...+.+..+.|..+|.+..+.+. .+...|...... +...++.+.|.++|+..++.. +.+...|...+.
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~--~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f--~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKR--CTYHVYVAYALMEYYCNKDPKRARKIFERGLKKF--PSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCC--S-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHH--TT-HHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC--CCCHHHHHHHHH
Confidence 344444555555555555555555553332 222222222222 112334444555555544332 334444445555
Q ss_pred HHHccCCHHHHHHHHHHHHhCCCCCCh---HhHHHHHHHHHhcCCHHHHHHHHHHhh
Q 010342 360 GLFRLRRVEEAKEVFNCMLGIGVVADS---TTYAIVIDGLCESNQLDEAKRFWDDIV 413 (512)
Q Consensus 360 ~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~ 413 (512)
.+...++.+.|..+|++.... ++++. ..|...+..-.+.|+++.+.++.+++.
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~ 134 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAE 134 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHH
T ss_pred HHHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 555555555555555555543 12211 245555555555555555555555443
No 182
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.70 E-value=0.00077 Score=56.22 Aligned_cols=101 Identities=18% Similarity=0.127 Sum_probs=82.9
Q ss_pred HHHhhcCCHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCH
Q 010342 323 FGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQL 402 (512)
Q Consensus 323 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 402 (512)
.-+.+.+++.+|+..|.+.+.-. +-|.+-|..-..+|++.|.++.|++-.+..+..+ +-...+|..|..+|...|++
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l~--P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A~~~~gk~ 165 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIELD--PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLAYLALGKY 165 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcC--CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHccCcH
Confidence 34778999999999999987544 5567778888999999999999999999888754 33456899999999999999
Q ss_pred HHHHHHHHHhhcCCCCCCHHhHHHHH
Q 010342 403 DEAKRFWDDIVWPSNIHDNYVYAAMI 428 (512)
Q Consensus 403 ~~a~~~~~~~~~~~~~~~~~~~~~l~ 428 (512)
++|.+.|++.++. .|+..+|..=+
T Consensus 166 ~~A~~aykKaLel--dP~Ne~~K~nL 189 (304)
T KOG0553|consen 166 EEAIEAYKKALEL--DPDNESYKSNL 189 (304)
T ss_pred HHHHHHHHhhhcc--CCCcHHHHHHH
Confidence 9999999999774 56666654433
No 183
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.67 E-value=0.00026 Score=45.67 Aligned_cols=56 Identities=13% Similarity=0.108 Sum_probs=31.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 010342 428 IKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRK 484 (512)
Q Consensus 428 ~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 484 (512)
...+...|++++|.+.|+++++.. +-+...+..+..++...|++++|...++++.+
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344555566666666666665553 22455555566666666666666666666554
No 184
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.64 E-value=0.0015 Score=51.98 Aligned_cols=115 Identities=9% Similarity=-0.012 Sum_probs=80.2
Q ss_pred HHHHHHHHHHHH-hCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCC--CHHhHHHHHHHHHhcCCHHHHHHH
Q 010342 367 VEEAKEVFNCML-GIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIH--DNYVYAAMIKGLCRSGKIHEAVHF 443 (512)
Q Consensus 367 ~~~a~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~ 443 (512)
+..+...+..+. ..+..-....+..+...+...|++++|...+++.......+ ...++..+...+...|++++|.+.
T Consensus 15 ~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~ 94 (168)
T CHL00033 15 FTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEY 94 (168)
T ss_pred cccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHH
Confidence 334444444443 22222234567778888889999999999999997653222 235788899999999999999999
Q ss_pred HHHHHHCCCCCChhhHHHHHHHHH-------hcCCHHHHHHHHHHH
Q 010342 444 LYELVDSGVTPNIVCYNVVIDGAC-------KLSMKREAYQILREM 482 (512)
Q Consensus 444 ~~~~~~~~~~p~~~~~~~l~~~~~-------~~g~~~~a~~~~~~m 482 (512)
+++..... +.....+..+...+. ..|++++|...+++.
T Consensus 95 ~~~Al~~~-~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 95 YFQALERN-PFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHHHhC-cCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHH
Confidence 99998763 224556666776776 788888666655544
No 185
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.62 E-value=0.00021 Score=46.69 Aligned_cols=63 Identities=21% Similarity=0.270 Sum_probs=38.4
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHH
Q 010342 432 CRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497 (512)
Q Consensus 432 ~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l 497 (512)
...|++++|.+.|+++.+..+. +...+..+..+|.+.|++++|.++++++... .|+...|..+
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~--~~~~~~~~~l 64 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPD-NPEARLLLAQCYLKQGQYDEAEELLERLLKQ--DPDNPEYQQL 64 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTT-SHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG--GTTHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCHHHHHHH
Confidence 3456777777777777665322 5556666777777777777777777776653 4554444433
No 186
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.58 E-value=0.046 Score=48.13 Aligned_cols=109 Identities=18% Similarity=0.237 Sum_probs=81.6
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHH
Q 010342 352 VTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGL 431 (512)
Q Consensus 352 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 431 (512)
.+.+..+.-+...|+...|.++-.+.. .|+..-|...+.+++..+++++-.++... +.++.-|..++.+|
T Consensus 178 ~Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~ 247 (319)
T PF04840_consen 178 LSLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEAC 247 (319)
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHH
Confidence 456666777788888888888866653 47888888899999999999888776542 22346788899999
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 010342 432 CRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILR 480 (512)
Q Consensus 432 ~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 480 (512)
.+.|+..+|..++.++ .+..-+..|.+.|++.+|.+..-
T Consensus 248 ~~~~~~~eA~~yI~k~----------~~~~rv~~y~~~~~~~~A~~~A~ 286 (319)
T PF04840_consen 248 LKYGNKKEASKYIPKI----------PDEERVEMYLKCGDYKEAAQEAF 286 (319)
T ss_pred HHCCCHHHHHHHHHhC----------ChHHHHHHHHHCCCHHHHHHHHH
Confidence 9999999998888662 22456677788888888876543
No 187
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.56 E-value=0.0008 Score=53.49 Aligned_cols=91 Identities=14% Similarity=0.250 Sum_probs=41.7
Q ss_pred ChHhHHHHHHHHHh-----cCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc------------CChhhHHHHHHHH
Q 010342 28 NVVSYTTLIHGYCR-----TGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRT------------RDVERANVLMFKL 90 (512)
Q Consensus 28 ~~~~~~~l~~~~~~-----~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~------------~~~~~a~~~~~~~ 90 (512)
+-.+|..++..|.+ .|..+=....+..|.+-|+..|..+|+.|+..+=+. ..+..-.+...++
T Consensus 46 ~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~l 125 (228)
T PF06239_consen 46 DKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAIDL 125 (228)
T ss_pred cHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHHH
Confidence 44445555554442 244554555555555555555555555555443221 1222333333344
Q ss_pred HHHhhhcCCCCcchHhHHHHHHHHHccCC
Q 010342 91 WERMKEEEDLSVNNAAFANLVDSLCREGY 119 (512)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 119 (512)
+++|... ++-|+..++..|++.+.+.+.
T Consensus 126 L~qME~~-gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 126 LEQMENN-GVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHHc-CCCCcHHHHHHHHHHhccccH
Confidence 4444433 555555555555555544443
No 188
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.55 E-value=0.00056 Score=44.10 Aligned_cols=58 Identities=14% Similarity=0.217 Sum_probs=42.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 010342 392 VIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDS 450 (512)
Q Consensus 392 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 450 (512)
+...+...|++++|...|+++++.. +.+...+..+..++...|++++|...|+++++.
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3456677788888888888887665 556667777778888888888888888777764
No 189
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.53 E-value=0.021 Score=50.18 Aligned_cols=196 Identities=13% Similarity=0.086 Sum_probs=120.8
Q ss_pred HHHHHHHHhhCCCCCCcHHHHHHH-HHHHhhcCCHHHHHHHHHhhcccCCCCCChhhHHHHHH--HHHccCCHHHHHHHH
Q 010342 298 ALKVLNDMVAGKFCAPDAVTFTTI-IFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLR--GLFRLRRVEEAKEVF 374 (512)
Q Consensus 298 a~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~a~~~~ 374 (512)
++..++........+|.-.++..+ ..++.-.+++++|...-...++..... .+...++ ++.-.++.+.+...|
T Consensus 151 al~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n----~~al~vrg~~~yy~~~~~ka~~hf 226 (486)
T KOG0550|consen 151 ALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATN----AEALYVRGLCLYYNDNADKAINHF 226 (486)
T ss_pred hhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccch----hHHHHhcccccccccchHHHHHHH
Confidence 333344433333223433444433 345667889998888777766544222 2222332 334577889999999
Q ss_pred HHHHhCCCCCChHhH---HHH----------HHHHHhcCCHHHHHHHHHHhhcCC---CCCCHHhHHHHHHHHHhcCCHH
Q 010342 375 NCMLGIGVVADSTTY---AIV----------IDGLCESNQLDEAKRFWDDIVWPS---NIHDNYVYAAMIKGLCRSGKIH 438 (512)
Q Consensus 375 ~~~~~~~~~~~~~~~---~~l----------~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~ 438 (512)
++.+..+ |+...- ... .+-..+.|++..|.+.+.+.+..+ ..++...|.....+..+.|+..
T Consensus 227 ~qal~ld--pdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~ 304 (486)
T KOG0550|consen 227 QQALRLD--PDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLR 304 (486)
T ss_pred hhhhccC--hhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCch
Confidence 9988754 443321 111 233467899999999999997543 3456667777788888999999
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHH--HHHHHhcCCHHHHHHHHHHHHHCCCCC-ChHHHHHHHHhhc
Q 010342 439 EAVHFLYELVDSGVTPNIVCYNVV--IDGACKLSMKREAYQILREMRKNGLNP-DAVTWRILDKLHG 502 (512)
Q Consensus 439 ~a~~~~~~~~~~~~~p~~~~~~~l--~~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~ 502 (512)
+|+.--++..+.+ +..+...+ ..++...++|++|.+-++...+....+ +..++.-...++.
T Consensus 305 eaisdc~~Al~iD---~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s~e~r~~l~~A~~aLk 368 (486)
T KOG0550|consen 305 EAISDCNEALKID---SSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKDCEIRRTLREAQLALK 368 (486)
T ss_pred hhhhhhhhhhhcC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHH
Confidence 9999888877642 22333333 344556889999999999987643332 2344444444443
No 190
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.52 E-value=0.0061 Score=44.50 Aligned_cols=92 Identities=21% Similarity=0.208 Sum_probs=47.3
Q ss_pred HHHHHccCChhhHHHHHHHHHhcCCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC-CCcHHHHHHHHHHHhh
Q 010342 251 LRALCLIKNPTELLNVLVFMLQTQCQPD--VITLNTVINGFCKMGRIEEALKVLNDMVAGKFC-APDAVTFTTIIFGLLN 327 (512)
Q Consensus 251 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 327 (512)
..++-..|+.++|+.+|+.....|.... ...+-.+...+...|++++|..+|++....... .-+......+..++..
T Consensus 8 A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~ 87 (120)
T PF12688_consen 8 AWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYN 87 (120)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHH
Confidence 3344445555555555555555554332 223444555666667777777777666654210 0012222223335556
Q ss_pred cCCHHHHHHHHHhhc
Q 010342 328 VGRIQEALNLLYQVM 342 (512)
Q Consensus 328 ~~~~~~a~~~~~~~~ 342 (512)
.|+.++|+.++-..+
T Consensus 88 ~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 88 LGRPKEALEWLLEAL 102 (120)
T ss_pred CCCHHHHHHHHHHHH
Confidence 667777766665543
No 191
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.52 E-value=0.00049 Score=45.03 Aligned_cols=63 Identities=16% Similarity=0.135 Sum_probs=38.4
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcC-CHHHHHHHHHHHHH
Q 010342 421 NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLS-MKREAYQILREMRK 484 (512)
Q Consensus 421 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-~~~~a~~~~~~m~~ 484 (512)
..+|..+...+...|++++|+..|.+.++.+ +.+...|..+..++...| ++++|++.+++..+
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 4455666666666666666666666666653 224556666666666666 56666666666554
No 192
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.51 E-value=0.011 Score=55.85 Aligned_cols=66 Identities=14% Similarity=-0.022 Sum_probs=46.4
Q ss_pred CCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 010342 383 VADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDS 450 (512)
Q Consensus 383 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 450 (512)
+.++..|..+.-.....|++++|...+++++..+ |+...|..+...+...|+.++|.+.+++....
T Consensus 417 ~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L 482 (517)
T PRK10153 417 NVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNL 482 (517)
T ss_pred cCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 3445566666655666677777777777777654 46667777777777777777777777777665
No 193
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.49 E-value=0.0019 Score=51.45 Aligned_cols=99 Identities=16% Similarity=0.183 Sum_probs=66.7
Q ss_pred HHHHHHHHHhCCCCCChHhHHHHHHHHHh-----cCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcC---------
Q 010342 370 AKEVFNCMLGIGVVADSTTYAIVIDGLCE-----SNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSG--------- 435 (512)
Q Consensus 370 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--------- 435 (512)
....|+.... -..+..+|..+++.|.+ .|..+=....+..|.+-|+..|..+|+.|++.+=+..
T Consensus 33 ~~~~f~~~~~--~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~ 110 (228)
T PF06239_consen 33 HEELFERAPG--QAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQA 110 (228)
T ss_pred hHHHHHHHhh--ccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHH
Confidence 3444444422 25677888888888865 4677777788888888888889999999988875421
Q ss_pred -------CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcC
Q 010342 436 -------KIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLS 470 (512)
Q Consensus 436 -------~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 470 (512)
+-+-|++++++|...|+-||..++..++..+.+.+
T Consensus 111 ~F~hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s 152 (228)
T PF06239_consen 111 EFMHYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKS 152 (228)
T ss_pred HhccCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcccc
Confidence 22346666666666666666666666666665444
No 194
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.46 E-value=0.031 Score=43.30 Aligned_cols=131 Identities=17% Similarity=0.182 Sum_probs=66.8
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhhcccCCCCCChhhHH
Q 010342 276 QPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYN 355 (512)
Q Consensus 276 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 355 (512)
.|+...-..|..+..+.|+..+|...|.+....- ...|......+.++....+++..|...+++.++...-..++.+..
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~-fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~L 164 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGI-FAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHL 164 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccc-cCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchH
Confidence 3444444555555666666666666666555422 244555555555555566666666666655554332222333444
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHH
Q 010342 356 AVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFW 409 (512)
Q Consensus 356 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 409 (512)
.+.+.+...|.+.+|+..|+..... -|+...-......+.+.|+.+++..-+
T Consensus 165 l~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq~ 216 (251)
T COG4700 165 LFARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQY 216 (251)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHHH
Confidence 4555555566666666666655553 233333333333445555554444333
No 195
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.45 E-value=0.00056 Score=44.77 Aligned_cols=65 Identities=9% Similarity=0.130 Sum_probs=47.7
Q ss_pred ChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcC-CHHHHHHHHHHHHHC
Q 010342 385 DSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSG-KIHEAVHFLYELVDS 450 (512)
Q Consensus 385 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~ 450 (512)
++.+|..+...+...|++++|+..|++.++.+ +.+...|..+..++...| ++++|++.+++.++.
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 34567777777777888888888888777664 556667777777787777 678888877777654
No 196
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.41 E-value=0.0077 Score=46.56 Aligned_cols=74 Identities=16% Similarity=0.303 Sum_probs=55.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH-----HCCCCCChHHHHHH
Q 010342 423 VYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMR-----KNGLNPDAVTWRIL 497 (512)
Q Consensus 423 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~-----~~~~~p~~~~~~~l 497 (512)
+...++..+...|++++|....+.+.... +.+...|..++.++...|+..+|.+.|+++. +.|+.|+..+-...
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~l~ 142 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRALY 142 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHHHH
Confidence 56667778888999999999999999875 4478899999999999999999999998874 45999988775543
No 197
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.37 E-value=0.014 Score=47.86 Aligned_cols=136 Identities=11% Similarity=0.034 Sum_probs=81.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHHHhhhcCCCCcchHhHHHHH
Q 010342 32 YTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLV 111 (512)
Q Consensus 32 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 111 (512)
.+.++..+...+.+.-...++.+..+...+.++...+.+++.-.+.||.+.|...++++-+....-.+...+..+.....
T Consensus 180 my~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a 259 (366)
T KOG2796|consen 180 MYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSA 259 (366)
T ss_pred HHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhh
Confidence 35566666667777777777777777655556667777777777778877777766655443333333333333333334
Q ss_pred HHHHccCChhHHHHHHHhcCCCCCCCcchhHHHHHHHHHhcCChhhHHHHHHHHHHc
Q 010342 112 DSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKR 168 (512)
Q Consensus 112 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 168 (512)
..+.-.+++.+|...+.++...+. .++..-|.-.-+..-.|+..+|.+.++.+++.
T Consensus 260 ~i~lg~nn~a~a~r~~~~i~~~D~-~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 260 FLHLGQNNFAEAHRFFTEILRMDP-RNAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred hheecccchHHHHHHHhhccccCC-CchhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 445556667777777766665543 23333333333344456666677777666665
No 198
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.36 E-value=0.014 Score=42.65 Aligned_cols=53 Identities=21% Similarity=0.240 Sum_probs=24.3
Q ss_pred HHccCCHHHHHHHHHHHHhCCCCCC--hHhHHHHHHHHHhcCCHHHHHHHHHHhh
Q 010342 361 LFRLRRVEEAKEVFNCMLGIGVVAD--STTYAIVIDGLCESNQLDEAKRFWDDIV 413 (512)
Q Consensus 361 ~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 413 (512)
+-..|+.++|+.+|++....|.... ...+-.+...+...|++++|..++++..
T Consensus 11 ~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~ 65 (120)
T PF12688_consen 11 HDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEAL 65 (120)
T ss_pred HHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3444555555555555555443322 1123334444445555555555555444
No 199
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.32 E-value=0.0023 Score=42.41 Aligned_cols=63 Identities=16% Similarity=0.092 Sum_probs=39.2
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHH
Q 010342 429 KGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTW 494 (512)
Q Consensus 429 ~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~ 494 (512)
..|.+.+++++|.++++.++..+ +.+...|......+.+.|++++|.+.+++..+ ..|+..+.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~--~~p~~~~~ 65 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALE--LSPDDPDA 65 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHH--HCCCcHHH
Confidence 45566667777777777766654 22555666666666777777777777777665 34554443
No 200
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.31 E-value=0.0027 Score=54.01 Aligned_cols=103 Identities=11% Similarity=0.023 Sum_probs=59.3
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCh----hhHHHHHHHHHhcCChhhHHHHHHHHHHHhhhcCCCCcchHh
Q 010342 31 SYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNS----LTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAA 106 (512)
Q Consensus 31 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 106 (512)
.|......+.+.|++++|...|+.+.+.. |+. ..+..+..++...|+++.|...+.++++..|.. ......
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y--P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s---~~~~dA 219 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKY--PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKS---PKAADA 219 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC---cchhHH
Confidence 34444444455666667766666666642 332 355556666666677777766666666555432 223344
Q ss_pred HHHHHHHHHccCChhHHHHHHHhcCCCCCCCc
Q 010342 107 FANLVDSLCREGYVNEVFRIAEDMPQGKSVNE 138 (512)
Q Consensus 107 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 138 (512)
+-.+...+...|+.++|..+|+.+.+..+...
T Consensus 220 l~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 220 MFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTD 251 (263)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence 44556666666777777776666655544433
No 201
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.25 E-value=0.044 Score=51.10 Aligned_cols=268 Identities=16% Similarity=0.138 Sum_probs=132.3
Q ss_pred CCcchHHHHHHHHhccCchhHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCcccHHHHH
Q 010342 172 PSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYL 251 (512)
Q Consensus 172 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 251 (512)
|....+.+-+..|...|.+++|.++- +.-....-|.-+.......-+++-|.+.|.+....
T Consensus 554 ~~evp~~~~m~q~Ieag~f~ea~~ia------clgVv~~DW~~LA~~ALeAL~f~~ARkAY~rVRdl------------- 614 (1081)
T KOG1538|consen 554 AVEVPQSAPMYQYIERGLFKEAYQIA------CLGVTDTDWRELAMEALEALDFETARKAYIRVRDL------------- 614 (1081)
T ss_pred cccccccccchhhhhccchhhhhccc------ccceecchHHHHHHHHHhhhhhHHHHHHHHHHhcc-------------
Confidence 34444555556666777777666542 11122233444444444445666666655554321
Q ss_pred HHHHccCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHH-----HHHHHh
Q 010342 252 RALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTT-----IIFGLL 326 (512)
Q Consensus 252 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~-----l~~~~~ 326 (512)
.+-+...-++++.+.|-.|+... +...++-.|.+.+|-++|.+--..+ .-...|+- ..+-+.
T Consensus 615 -------~~L~li~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~~G~en---RAlEmyTDlRMFD~aQE~~ 681 (1081)
T KOG1538|consen 615 -------RYLELISELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKRSGHEN---RALEMYTDLRMFDYAQEFL 681 (1081)
T ss_pred -------HHHHHHHHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHHcCchh---hHHHHHHHHHHHHHHHHHh
Confidence 12233445566666666666543 3344555667777777765432211 11111111 123334
Q ss_pred hcCCHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHccCCHHHHHHHHHH------HHhCCC---CCChHhHHHHHHHHH
Q 010342 327 NVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNC------MLGIGV---VADSTTYAIVIDGLC 397 (512)
Q Consensus 327 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~------~~~~~~---~~~~~~~~~l~~~~~ 397 (512)
..|..++-..+.++-. + ..-+..-=.+....+...|+.++|..+.-+ +.+.+. ..+..+...+..-+.
T Consensus 682 ~~g~~~eKKmL~RKRA-~--WAr~~kePkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk 758 (1081)
T KOG1538|consen 682 GSGDPKEKKMLIRKRA-D--WARNIKEPKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLK 758 (1081)
T ss_pred hcCChHHHHHHHHHHH-H--HhhhcCCcHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHh
Confidence 4444444333332210 0 000100111223334455555555443211 111111 223444555555555
Q ss_pred hcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhh-----------HHHHHHHH
Q 010342 398 ESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVC-----------YNVVIDGA 466 (512)
Q Consensus 398 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~-----------~~~l~~~~ 466 (512)
+...+.-|-++|..+-+ ...+++.....+++.+|..+-++.-+. .|+... |.-.-.+|
T Consensus 759 ~l~~~gLAaeIF~k~gD---------~ksiVqlHve~~~W~eAFalAe~hPe~--~~dVy~pyaqwLAE~DrFeEAqkAf 827 (1081)
T KOG1538|consen 759 KLDSPGLAAEIFLKMGD---------LKSLVQLHVETQRWDEAFALAEKHPEF--KDDVYMPYAQWLAENDRFEEAQKAF 827 (1081)
T ss_pred hccccchHHHHHHHhcc---------HHHHhhheeecccchHhHhhhhhCccc--cccccchHHHHhhhhhhHHHHHHHH
Confidence 66667777777777632 234666777778888887776654432 233221 33445678
Q ss_pred HhcCCHHHHHHHHHHHHHC
Q 010342 467 CKLSMKREAYQILREMRKN 485 (512)
Q Consensus 467 ~~~g~~~~a~~~~~~m~~~ 485 (512)
.++|+..+|.++++++...
T Consensus 828 hkAGr~~EA~~vLeQLtnn 846 (1081)
T KOG1538|consen 828 HKAGRQREAVQVLEQLTNN 846 (1081)
T ss_pred HHhcchHHHHHHHHHhhhh
Confidence 8888888888888887654
No 202
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.25 E-value=0.04 Score=45.32 Aligned_cols=68 Identities=12% Similarity=0.046 Sum_probs=38.4
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHHhCCC--CCChhhHHHHHHHHHhcCChhhHHHHHHHHHHHhhhc
Q 010342 30 VSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV--LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEE 97 (512)
Q Consensus 30 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 97 (512)
...-.....+...|++.+|...|+++..... +--......++.++.+.|+++.|...+.++++..|..
T Consensus 6 ~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~ 75 (203)
T PF13525_consen 6 EALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNS 75 (203)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC
Confidence 3444455556677777777777777766421 1112234455666777777777777777776665554
No 203
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.22 E-value=0.0094 Score=50.78 Aligned_cols=95 Identities=13% Similarity=0.004 Sum_probs=45.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCC---HHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCChhhHHHHH
Q 010342 389 YAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD---NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGV--TPNIVCYNVVI 463 (512)
Q Consensus 389 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~p~~~~~~~l~ 463 (512)
|...+..+.+.|++++|...|+.+++.. +.+ ...+..+..+|...|++++|...|+.+++.-+ +.....+..+.
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~y-P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg 224 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKY-PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVG 224 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHC-cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHH
Confidence 3333333344455555555555555432 111 13444555555556666666666655554311 01122333344
Q ss_pred HHHHhcCCHHHHHHHHHHHHH
Q 010342 464 DGACKLSMKREAYQILREMRK 484 (512)
Q Consensus 464 ~~~~~~g~~~~a~~~~~~m~~ 484 (512)
..+...|++++|.++++.+.+
T Consensus 225 ~~~~~~g~~~~A~~~~~~vi~ 245 (263)
T PRK10803 225 VIMQDKGDTAKAKAVYQQVIK 245 (263)
T ss_pred HHHHHcCCHHHHHHHHHHHHH
Confidence 455556666666666665554
No 204
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.21 E-value=0.0024 Score=55.64 Aligned_cols=273 Identities=15% Similarity=0.107 Sum_probs=157.5
Q ss_pred hHHHHHH--HHHhcCChhHHHHHHHHHHhCCCCCChh----hHHHHHHHHHhcCChhhHHHHHHHHH---HHhhhcCCCC
Q 010342 31 SYTTLIH--GYCRTGEMDVAYKVFDEMRHCGVLPNSL----TYSVLVRGVLRTRDVERANVLMFKLW---ERMKEEEDLS 101 (512)
Q Consensus 31 ~~~~l~~--~~~~~~~~~~a~~~~~~m~~~~~~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~~ 101 (512)
.+...+. -+++.|+....+.+|+...+.|. -|.. .|+.|..+|.-.+++++|.+.+..=+ +.+....
T Consensus 17 CleLalEGERLck~gdcraGv~ff~aA~qvGT-eDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdkl--- 92 (639)
T KOG1130|consen 17 CLELALEGERLCKMGDCRAGVDFFKAALQVGT-EDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKL--- 92 (639)
T ss_pred HHHHHHHHHHHHhccchhhhHHHHHHHHHhcc-hHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchh---
Confidence 4444333 37889999999999999988773 3443 45666778888888888887653211 1111111
Q ss_pred cchHhHHHHHHHHHccCChhHHHHHHHhcCC----CC-CCCcchhHHHHHHHHHhcCC--------------------hh
Q 010342 102 VNNAAFANLVDSLCREGYVNEVFRIAEDMPQ----GK-SVNEEFACGHMIDSLCRSGR--------------------NH 156 (512)
Q Consensus 102 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~-~~~~~~~~~~l~~~~~~~~~--------------------~~ 156 (512)
-...+-..|...+--.|.+++|.-...+-.. .| ......++..+..+|...|+ ++
T Consensus 93 GEAKssgNLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~ 172 (639)
T KOG1130|consen 93 GEAKSSGNLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALE 172 (639)
T ss_pred ccccccccccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHH
Confidence 1111122255555566777776544332111 01 01112233335555544332 23
Q ss_pred hHHHHHHHH----HHcCCC-CCcchHHHHHHHHhccCchhHHHHHHHHHH----hCCCCC-chhhHHHHHHHHhccCCHH
Q 010342 157 GASRVVYVM----RKRGLT-PSLVSYNSIVHGLCKHGGCMRAYQLLEEGI----QFGYLP-SEHTYKVLVEGLCGESDLE 226 (512)
Q Consensus 157 ~a~~~~~~~----~~~g~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~-~~~~~~~l~~~~~~~g~~~ 226 (512)
.|.+.|.+- .+.|-. .-...|..|...|.-.|+++.|+...+.-. +.|-.. ....+..+..+++-.|+++
T Consensus 173 ~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe 252 (639)
T KOG1130|consen 173 NAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFE 252 (639)
T ss_pred HHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccH
Confidence 344444332 122211 123456677777777888998887665432 223222 3457788888888899999
Q ss_pred HHHHHHHHHHhC-----CCCCCcccHHHHHHHHHccCChhhHHHHHHHHHhc-----CCCCChhhHHHHHHHHHhcCCHH
Q 010342 227 KARKVLQFMLSK-----KDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQT-----QCQPDVITLNTVINGFCKMGRIE 296 (512)
Q Consensus 227 ~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~ 296 (512)
.|.+.|+..... +..........+...|.-..++++|+.++..-+.. ...-....+-+|..+|...|..+
T Consensus 253 ~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~ 332 (639)
T KOG1130|consen 253 LAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHR 332 (639)
T ss_pred hHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHH
Confidence 999888765321 12223445666777777777888888776553321 11224566778888888888888
Q ss_pred HHHHHHHHHhh
Q 010342 297 EALKVLNDMVA 307 (512)
Q Consensus 297 ~a~~~~~~~~~ 307 (512)
+|+...+...+
T Consensus 333 kAl~fae~hl~ 343 (639)
T KOG1130|consen 333 KALYFAELHLR 343 (639)
T ss_pred HHHHHHHHHHH
Confidence 88877765543
No 205
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.16 E-value=0.1 Score=43.03 Aligned_cols=140 Identities=15% Similarity=0.111 Sum_probs=101.6
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHH----
Q 010342 317 TFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIV---- 392 (512)
Q Consensus 317 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l---- 392 (512)
..+.++..+.-.+.+.-.++.+.+.++ ..-+.++.....+++.-.+.||.+.|...|++..+..-..+..+.+.+
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~-~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIK-YYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHH-hCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhh
Confidence 345667777778888888888888664 444567788888999999999999999999987764334444444333
Q ss_pred -HHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHH
Q 010342 393 -IDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYN 460 (512)
Q Consensus 393 -~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~ 460 (512)
...|.-.+++..|...+.++...+ +.|....|.-.-+....|+..+|++.+..|.... |...+-+
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~--P~~~l~e 323 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQD--PRHYLHE 323 (366)
T ss_pred hhhheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhccC--Cccchhh
Confidence 345566778889999998888765 4555566666666667899999999999998864 4443433
No 206
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.14 E-value=0.0054 Score=53.60 Aligned_cols=286 Identities=13% Similarity=0.075 Sum_probs=147.5
Q ss_pred HHHhccCchhHHHHHHHHHHhCCCCCchh----hHHHHHHHHhccCCHHHHHHHHHHHHh----CCC-CCCcccHHHHHH
Q 010342 182 HGLCKHGGCMRAYQLLEEGIQFGYLPSEH----TYKVLVEGLCGESDLEKARKVLQFMLS----KKD-VDRTRICNIYLR 252 (512)
Q Consensus 182 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~-~~~~~~~~~l~~ 252 (512)
.-+++.|+......+|+.+++.| .-|.. .|..|..+|.-.+|+++|+++...=.. .+. .-.......+..
T Consensus 25 ERLck~gdcraGv~ff~aA~qvG-TeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGN 103 (639)
T KOG1130|consen 25 ERLCKMGDCRAGVDFFKAALQVG-TEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGN 103 (639)
T ss_pred HHHHhccchhhhHHHHHHHHHhc-chHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccc
Confidence 34778899999999999998877 44433 466667777788888888877643110 011 111222233333
Q ss_pred HHHccCChhhHHHHHHHH----HhcCCC-CChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhh
Q 010342 253 ALCLIKNPTELLNVLVFM----LQTQCQ-PDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLN 327 (512)
Q Consensus 253 ~~~~~~~~~~a~~~~~~~----~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 327 (512)
.+--.|.+++|.-....- .+.|-+ .....+..+...|...|+.-.... -.+.+ ..+...-.
T Consensus 104 tlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~----pee~g--~f~~ev~~-------- 169 (639)
T KOG1130|consen 104 TLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEA----PEEKG--AFNAEVTS-------- 169 (639)
T ss_pred hhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCC----hhhcc--cccHHHHH--------
Confidence 333344444444322111 111100 011122222333332222100000 00000 00000000
Q ss_pred cCCHHHHHHHHHhhcc---cCCC-CCChhhHHHHHHHHHccCCHHHHHHHHHHHH----hCCCCC-ChHhHHHHHHHHHh
Q 010342 328 VGRIQEALNLLYQVMP---QRGY-SPGIVTYNAVLRGLFRLRRVEEAKEVFNCML----GIGVVA-DSTTYAIVIDGLCE 398 (512)
Q Consensus 328 ~~~~~~a~~~~~~~~~---~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~-~~~~~~~l~~~~~~ 398 (512)
.++.|.+.|.+-++ ..|- -..-..|..|...|.-.|+++.|+...+.-. +.|-.. ....+..+.++++-
T Consensus 170 --al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hif 247 (639)
T KOG1130|consen 170 --ALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIF 247 (639)
T ss_pred --HHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhh
Confidence 12233333332111 1000 0112345566666667788888887665433 233221 23467778888888
Q ss_pred cCCHHHHHHHHHHhh----cCCC-CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHH----CC-CCCChhhHHHHHHHHHh
Q 010342 399 SNQLDEAKRFWDDIV----WPSN-IHDNYVYAAMIKGLCRSGKIHEAVHFLYELVD----SG-VTPNIVCYNVVIDGACK 468 (512)
Q Consensus 399 ~g~~~~a~~~~~~~~----~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~-~~p~~~~~~~l~~~~~~ 468 (512)
.|+++.|.+.|+... +.|. .....+..+|...|.-..++++|+.++.+-.. .+ ..-....+.+|..++..
T Consensus 248 lg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~a 327 (639)
T KOG1130|consen 248 LGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNA 327 (639)
T ss_pred hcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 899999988887653 2221 11233455677788777888888888765332 11 12244567788888988
Q ss_pred cCCHHHHHHHHHHHHH
Q 010342 469 LSMKREAYQILREMRK 484 (512)
Q Consensus 469 ~g~~~~a~~~~~~m~~ 484 (512)
.|..++|+.+.+.-++
T Consensus 328 lg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 328 LGEHRKALYFAELHLR 343 (639)
T ss_pred hhhHHHHHHHHHHHHH
Confidence 9999988887766543
No 207
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.12 E-value=0.16 Score=44.53 Aligned_cols=311 Identities=14% Similarity=0.080 Sum_probs=197.4
Q ss_pred hhHHHHHHHHHHcCCCCCcchHHHHHHHHhc--cCchhHHHHHHHHHHhCCCCCchhhHHHHHHHH--hccCCHHHHHHH
Q 010342 156 HGASRVVYVMRKRGLTPSLVSYNSIVHGLCK--HGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGL--CGESDLEKARKV 231 (512)
Q Consensus 156 ~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~g~~~~a~~~ 231 (512)
..+.+.|..-+. ...|..|-.++.. .|+-..|.++-.+..+. +..|...+..++.+. .-.|+++.|.+-
T Consensus 70 ~t~~Ryfr~rKR------drgyqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~k 142 (531)
T COG3898 70 YTARRYFRERKR------DRGYQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKK 142 (531)
T ss_pred HHHHHHHHHHHh------hhHHHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHH
Confidence 344455544443 2457777666654 67777777776665432 233444444455443 457999999999
Q ss_pred HHHHHhCCCCCCcccHHHHHHHHHccCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC
Q 010342 232 LQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFC 311 (512)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 311 (512)
|+.|.... ....--+..+.-...+.|..+.|...-...-..-.. -...+...+...+..|+|+.|+++++.-.....+
T Consensus 143 feAMl~dP-EtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~-l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vi 220 (531)
T COG3898 143 FEAMLDDP-ETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQ-LPWAARATLEARCAAGDWDGALKLVDAQRAAKVI 220 (531)
T ss_pred HHHHhcCh-HHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccC-CchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhh
Confidence 99997421 111112333334445688888888888777665433 3456778888999999999999999988876655
Q ss_pred CCcHHHHH--HHHHHHh---hcCCHHHHHHHHHhhcccCCCCCChhhH-HHHHHHHHccCCHHHHHHHHHHHHhCCCCCC
Q 010342 312 APDAVTFT--TIIFGLL---NVGRIQEALNLLYQVMPQRGYSPGIVTY-NAVLRGLFRLRRVEEAKEVFNCMLGIGVVAD 385 (512)
Q Consensus 312 ~~~~~~~~--~l~~~~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 385 (512)
.++..-.. .|+.+-. -..+...|.+.-.+ ...+.||..-- .....++.+.|+..++-.+++.+-+.. |.
T Consensus 221 e~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~---a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~e--PH 295 (531)
T COG3898 221 EKDVAERSRAVLLTAKAMSLLDADPASARDDALE---ANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAE--PH 295 (531)
T ss_pred chhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHH---HhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcC--CC
Confidence 66654333 3333322 13345555554433 44556664432 234577889999999999999999864 44
Q ss_pred hHhHHHHHHHHHhcCCHHHHHHHHHHhhc--CCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHH
Q 010342 386 STTYAIVIDGLCESNQLDEAKRFWDDIVW--PSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVI 463 (512)
Q Consensus 386 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 463 (512)
+.+... ..+.+.|+. +..-+++..+ .-.+.+......+..+-...|++..|..--+...+. .|....|..|.
T Consensus 296 P~ia~l--Y~~ar~gdt--a~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~--~pres~~lLlA 369 (531)
T COG3898 296 PDIALL--YVRARSGDT--ALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAARE--APRESAYLLLA 369 (531)
T ss_pred hHHHHH--HHHhcCCCc--HHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhh--CchhhHHHHHH
Confidence 444332 234455542 2222222211 111446667777888888899999888777666553 77888888877
Q ss_pred HHHHh-cCCHHHHHHHHHHHHHCC
Q 010342 464 DGACK-LSMKREAYQILREMRKNG 486 (512)
Q Consensus 464 ~~~~~-~g~~~~a~~~~~~m~~~~ 486 (512)
+.-.. .|+-.++..++.+..+.-
T Consensus 370 dIeeAetGDqg~vR~wlAqav~AP 393 (531)
T COG3898 370 DIEEAETGDQGKVRQWLAQAVKAP 393 (531)
T ss_pred HHHhhccCchHHHHHHHHHHhcCC
Confidence 76654 499999999998888643
No 208
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.07 E-value=0.18 Score=44.25 Aligned_cols=297 Identities=12% Similarity=0.053 Sum_probs=180.6
Q ss_pred hHHHHHHHHHh--cCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHh--ccCchhHHHHHHHHHHhCCCCCchh--hHHH
Q 010342 141 ACGHMIDSLCR--SGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLC--KHGGCMRAYQLLEEGIQFGYLPSEH--TYKV 214 (512)
Q Consensus 141 ~~~~l~~~~~~--~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~ 214 (512)
.|.+|-.++.. .|+-..|.+.-.+..+. +.-|......++.+-. -.|+++.|.+-|+.|.. .|... -+..
T Consensus 84 gyqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~---dPEtRllGLRg 159 (531)
T COG3898 84 GYQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD---DPETRLLGLRG 159 (531)
T ss_pred HHHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc---ChHHHHHhHHH
Confidence 56666666554 46666676666554322 2336666666665544 47899999999999875 33322 2233
Q ss_pred HHHHHhccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChhhHHHHHHHHHhcC-CCCChhh--HHHHHHHHHh
Q 010342 215 LVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQ-CQPDVIT--LNTVINGFCK 291 (512)
Q Consensus 215 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~--~~~l~~~~~~ 291 (512)
|.-..-+.|+.+.|..+-+..-.. -+.-.......+...|..|+++.|+++++.-.... +.++..- -..|+.+-..
T Consensus 160 LyleAqr~GareaAr~yAe~Aa~~-Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~ 238 (531)
T COG3898 160 LYLEAQRLGAREAARHYAERAAEK-APQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAM 238 (531)
T ss_pred HHHHHHhcccHHHHHHHHHHHHhh-ccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHH
Confidence 333445778888888888777543 33345677888888999999999999988776543 2333322 2233333221
Q ss_pred ---cCCHHHHHHHHHHHhhCCCCCCcHHH-HHHHHHHHhhcCCHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHccCCH
Q 010342 292 ---MGRIEEALKVLNDMVAGKFCAPDAVT-FTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRV 367 (512)
Q Consensus 292 ---~~~~~~a~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 367 (512)
..+...|...-.+..+. .|+..- -..-..++.+.|+..++-.+++.+-+. .|.+..+... .+.+.|+.
T Consensus 239 s~ldadp~~Ar~~A~~a~KL---~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~---ePHP~ia~lY--~~ar~gdt 310 (531)
T COG3898 239 SLLDADPASARDDALEANKL---APDLVPAAVVAARALFRDGNLRKGSKILETAWKA---EPHPDIALLY--VRARSGDT 310 (531)
T ss_pred HHhcCChHHHHHHHHHHhhc---CCccchHHHHHHHHHHhccchhhhhhHHHHHHhc---CCChHHHHHH--HHhcCCCc
Confidence 13455566555555443 344332 233456788899999998888875533 4555544333 33455553
Q ss_pred HHHHHHHHHHHh-CCC-CCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHh-cCCHHHHHHHH
Q 010342 368 EEAKEVFNCMLG-IGV-VADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCR-SGKIHEAVHFL 444 (512)
Q Consensus 368 ~~a~~~~~~~~~-~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~a~~~~ 444 (512)
. ..-+++..+ ..+ +.+.++...+..+-...|++..|..--+.... ..|....|..|.+.-.. .||-.++...+
T Consensus 311 a--~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wl 386 (531)
T COG3898 311 A--LDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWL 386 (531)
T ss_pred H--HHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHH
Confidence 3 222222222 012 33455666777777888888888777776654 36777777777776544 48888888888
Q ss_pred HHHHHCCCCC
Q 010342 445 YELVDSGVTP 454 (512)
Q Consensus 445 ~~~~~~~~~p 454 (512)
.+.++..-.|
T Consensus 387 Aqav~APrdP 396 (531)
T COG3898 387 AQAVKAPRDP 396 (531)
T ss_pred HHHhcCCCCC
Confidence 8887754333
No 209
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.01 E-value=0.097 Score=46.63 Aligned_cols=80 Identities=13% Similarity=0.040 Sum_probs=47.0
Q ss_pred hHHHHHHHHHccCChhHHHHHHHhcCCCC---CCCcchhHHHHHHHHHh---cCChhhHHHHHHHHHHcCCCCCcchHHH
Q 010342 106 AFANLVDSLCREGYVNEVFRIAEDMPQGK---SVNEEFACGHMIDSLCR---SGRNHGASRVVYVMRKRGLTPSLVSYNS 179 (512)
Q Consensus 106 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~g~~p~~~~~~~ 179 (512)
+...++-+|....+++..+++.+.+.... .......-....-++-+ .|+.++|++++..+......+++.+|..
T Consensus 143 iv~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL 222 (374)
T PF13281_consen 143 IVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGL 222 (374)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHH
Confidence 33345556777777777777777776542 11112222233444555 6777777777777555555566777776
Q ss_pred HHHHHh
Q 010342 180 IVHGLC 185 (512)
Q Consensus 180 l~~~~~ 185 (512)
+.+.|-
T Consensus 223 ~GRIyK 228 (374)
T PF13281_consen 223 LGRIYK 228 (374)
T ss_pred HHHHHH
Confidence 666553
No 210
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.01 E-value=0.14 Score=48.00 Aligned_cols=89 Identities=13% Similarity=0.139 Sum_probs=54.7
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhhcccCCCCCChhh-----
Q 010342 279 VITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVT----- 353 (512)
Q Consensus 279 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----- 353 (512)
..+...+...+.+...+..|-++|..|-. ...+++.....+++++|..+-++ . ....||...
T Consensus 747 re~l~~~a~ylk~l~~~gLAaeIF~k~gD----------~ksiVqlHve~~~W~eAFalAe~-h--Pe~~~dVy~pyaqw 813 (1081)
T KOG1538|consen 747 REPLLLCATYLKKLDSPGLAAEIFLKMGD----------LKSLVQLHVETQRWDEAFALAEK-H--PEFKDDVYMPYAQW 813 (1081)
T ss_pred hhHHHHHHHHHhhccccchHHHHHHHhcc----------HHHHhhheeecccchHhHhhhhh-C--ccccccccchHHHH
Confidence 33444444445555667777788877653 23456777888888888887655 2 223444321
Q ss_pred ------HHHHHHHHHccCCHHHHHHHHHHHHhC
Q 010342 354 ------YNAVLRGLFRLRRVEEAKEVFNCMLGI 380 (512)
Q Consensus 354 ------~~~l~~~~~~~~~~~~a~~~~~~~~~~ 380 (512)
|...-.+|.+.|+..+|..+++++...
T Consensus 814 LAE~DrFeEAqkAfhkAGr~~EA~~vLeQLtnn 846 (1081)
T KOG1538|consen 814 LAENDRFEEAQKAFHKAGRQREAVQVLEQLTNN 846 (1081)
T ss_pred hhhhhhHHHHHHHHHHhcchHHHHHHHHHhhhh
Confidence 233345667777777777777777654
No 211
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.00 E-value=0.006 Score=40.34 Aligned_cols=56 Identities=14% Similarity=0.134 Sum_probs=37.7
Q ss_pred HHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 010342 394 DGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDS 450 (512)
Q Consensus 394 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 450 (512)
..|.+.+++++|.++++.++..+ +.+...+.....++...|++++|.+.|++..+.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 45666677777777777776654 445566666667777777777777777777665
No 212
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.97 E-value=0.0084 Score=46.35 Aligned_cols=100 Identities=15% Similarity=0.211 Sum_probs=70.5
Q ss_pred ccCcHHHHHHHHHHHHhC--C-CCCChH------------------hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCh
Q 010342 6 GLSRVGEAHKLFFDMKSR--G-HVPNVV------------------SYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNS 64 (512)
Q Consensus 6 ~~g~~~~A~~~~~~~~~~--~-~~~~~~------------------~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~ 64 (512)
..|+.+.+...++++... | +-|+.. +...++..+...|++++|..+.+++.... +.|.
T Consensus 18 ~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E 96 (146)
T PF03704_consen 18 RAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRALALD-PYDE 96 (146)
T ss_dssp HTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-H
T ss_pred HCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCH
Confidence 456778888888877765 2 122211 23556666778999999999999998864 4577
Q ss_pred hhHHHHHHHHHhcCChhhHHHHHHHHHHHhhhcCCCCcchHh
Q 010342 65 LTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAA 106 (512)
Q Consensus 65 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 106 (512)
..|..+|.++...|+...|.+.|.++.+.+.+.-++.|+..+
T Consensus 97 ~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 97 EAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 889999999999999999999999998888887788888654
No 213
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=96.95 E-value=0.46 Score=46.82 Aligned_cols=445 Identities=13% Similarity=0.088 Sum_probs=213.1
Q ss_pred ChHhHHHHHHHHHhcCChhHHHHHHHHHH-hCCCCCC--hhhHHHHHHHHH-hcCChhhHHHHHHHHHHHhhhcCCCC-c
Q 010342 28 NVVSYTTLIHGYCRTGEMDVAYKVFDEMR-HCGVLPN--SLTYSVLVRGVL-RTRDVERANVLMFKLWERMKEEEDLS-V 102 (512)
Q Consensus 28 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~-~~~~~~~--~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~-~ 102 (512)
+...|..||. .|+..++-+. +..++|. ..++..+...+. ...+.+.|+..+.+.+...... +.. .
T Consensus 29 ~l~~Y~kLI~---------~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~-~~~d~ 98 (608)
T PF10345_consen 29 QLKQYYKLIA---------TAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERH-RLTDL 98 (608)
T ss_pred hHHHHHHHHH---------HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc-chHHH
Confidence 3445666655 4556666665 3333342 234555556555 5778888888887766554431 211 1
Q ss_pred chHhHHHHHHHHHccCChhHHHHHHHhcCCC----CCCCcchhHHHH-HHHHHhcCChhhHHHHHHHHHHcC---CCCCc
Q 010342 103 NNAAFANLVDSLCREGYVNEVFRIAEDMPQG----KSVNEEFACGHM-IDSLCRSGRNHGASRVVYVMRKRG---LTPSL 174 (512)
Q Consensus 103 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~g---~~p~~ 174 (512)
.-..-..+++.+.+.+... |.+.+++..+. +..+....+..+ +..+...+++..|.+.++.+.... ..|..
T Consensus 99 k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~ 177 (608)
T PF10345_consen 99 KFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAV 177 (608)
T ss_pred HHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHH
Confidence 1223334556666666555 77766664332 222233333333 233333478888888888776532 23344
Q ss_pred chHHHHHHHHh--ccCchhHHHHHHHHHHhCC---------CCCchhhHHHHHHHH--hccCCHHHHHHHHHHHHh---C
Q 010342 175 VSYNSIVHGLC--KHGGCMRAYQLLEEGIQFG---------YLPSEHTYKVLVEGL--CGESDLEKARKVLQFMLS---K 238 (512)
Q Consensus 175 ~~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~---------~~~~~~~~~~l~~~~--~~~g~~~~a~~~~~~~~~---~ 238 (512)
.++..++.+.. ..+..+.+.+.++.+.... ..|...+|..+++.+ ...|++..+...++.+.. .
T Consensus 178 ~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~ 257 (608)
T PF10345_consen 178 FVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDE 257 (608)
T ss_pred HHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 45555555544 3455666666666653321 133455666666654 456777677666655522 0
Q ss_pred --CCC------CC-----------------ccc-----------HHHHH--HHHHccCChhhHHHHH-------HHHH-h
Q 010342 239 --KDV------DR-----------------TRI-----------CNIYL--RALCLIKNPTELLNVL-------VFML-Q 272 (512)
Q Consensus 239 --~~~------~~-----------------~~~-----------~~~l~--~~~~~~~~~~~a~~~~-------~~~~-~ 272 (512)
..+ ++ ... +..++ -..+..+..+.+.+.+ +... .
T Consensus 258 ~~~~~~w~~~~~d~~i~l~~~~~~~~~~~~~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~ 337 (608)
T PF10345_consen 258 IKKSPSWPSWDEDGSIPLNIGEGSSNSGGTPLVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIK 337 (608)
T ss_pred hhcCccCCCcCCCeeEEeecccccccCCCceeEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhcc
Confidence 000 00 000 11111 1223344443444444 4444 1
Q ss_pred cCCCCCh--------hhHHHHHH---------HHHhcCCHHHHHHHHHHHhhCCCCCCc-------HHHHHHHHHHHhhc
Q 010342 273 TQCQPDV--------ITLNTVIN---------GFCKMGRIEEALKVLNDMVAGKFCAPD-------AVTFTTIIFGLLNV 328 (512)
Q Consensus 273 ~~~~~~~--------~~~~~l~~---------~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~ 328 (512)
....+.. ..|...+. ..+-.+++..|...++.+.......|+ +..+....-.+-..
T Consensus 338 ~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~ 417 (608)
T PF10345_consen 338 SPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQST 417 (608)
T ss_pred CCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHc
Confidence 1111111 11111111 223458898999999888754321121 22222223334467
Q ss_pred CCHHHHHHHHH-------hhcccCCCCCChhhHHHH--HHHHHc--cCCHHH--HHHHHHHHHhC-CCCCCh--HhHHH-
Q 010342 329 GRIQEALNLLY-------QVMPQRGYSPGIVTYNAV--LRGLFR--LRRVEE--AKEVFNCMLGI-GVVADS--TTYAI- 391 (512)
Q Consensus 329 ~~~~~a~~~~~-------~~~~~~~~~~~~~~~~~l--~~~~~~--~~~~~~--a~~~~~~~~~~-~~~~~~--~~~~~- 391 (512)
|+.+.|...|. +.....+...+..++..+ +-.+.. ..+..+ ...+++.+... .-.|+. .++..
T Consensus 418 g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila~LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~ 497 (608)
T PF10345_consen 418 GDLEAALYQYQKPRFLLCEAANRKSKFRELYILAALNLAIILQYESSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCL 497 (608)
T ss_pred CCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHHHHHHHHHhHhhcccchhhhHHHHHHHhcCccccCCccHHHHHHHHH
Confidence 99999999997 334344444444444321 111222 222223 66777766542 112222 23333
Q ss_pred HHHHHHhcC--CHHHHHHHHHHhhc-----CCCC-CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCCChhhHH
Q 010342 392 VIDGLCESN--QLDEAKRFWDDIVW-----PSNI-HDNYVYAAMIKGLCRSGKIHEAVHFLYELVDS---GVTPNIVCYN 460 (512)
Q Consensus 392 l~~~~~~~g--~~~~a~~~~~~~~~-----~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~p~~~~~~ 460 (512)
++.++.... ...++...+.+..+ .+.. .-..+++.|...+. .|+..+..+........ ...-....|.
T Consensus 498 ~~~~~~~~~~~~~ne~k~~l~~~L~~~~~~~~n~~l~~~~L~lm~~~lf-~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~ 576 (608)
T PF10345_consen 498 VLATYNTFEPFSSNEAKRHLQEALKMANNKLGNSQLLAILLNLMGHRLF-EGDVGEQAKKSARAFQLAKKSSDYSDQLWH 576 (608)
T ss_pred HHHHHhhCCccccHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhhhhhhhHHHH
Confidence 333332222 12244444433322 1111 11123333333333 67777765555443321 1122344563
Q ss_pred H-----HHHHHHhcCCHHHHHHHHHHHHH
Q 010342 461 V-----VIDGACKLSMKREAYQILREMRK 484 (512)
Q Consensus 461 ~-----l~~~~~~~g~~~~a~~~~~~m~~ 484 (512)
. +...+...|+.++|.....+...
T Consensus 577 ~v~~~~l~~~~~~~G~~~ka~~~~~~~~~ 605 (608)
T PF10345_consen 577 LVASGMLADSYEVQGDRDKAEEARQQLDR 605 (608)
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence 3 34446778999999988877653
No 214
>PRK15331 chaperone protein SicA; Provisional
Probab=96.94 E-value=0.009 Score=45.64 Aligned_cols=85 Identities=12% Similarity=-0.068 Sum_probs=49.8
Q ss_pred cccCcHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhhHH
Q 010342 5 CGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERAN 84 (512)
Q Consensus 5 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 84 (512)
..+|++++|..+|.-+.-.++. +..-|..|..++-..+++++|+..|......+ .-|+........++...|+.+.|.
T Consensus 48 y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~~~~~A~ 125 (165)
T PRK15331 48 YNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMRKAAKAR 125 (165)
T ss_pred HHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhCCHHHHH
Confidence 3566666666666666555433 44455566666666666666666666654433 234455555566666666666666
Q ss_pred HHHHHHH
Q 010342 85 VLMFKLW 91 (512)
Q Consensus 85 ~~~~~~~ 91 (512)
..+..+.
T Consensus 126 ~~f~~a~ 132 (165)
T PRK15331 126 QCFELVN 132 (165)
T ss_pred HHHHHHH
Confidence 6554444
No 215
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.93 E-value=0.021 Score=42.21 Aligned_cols=52 Identities=10% Similarity=0.121 Sum_probs=36.3
Q ss_pred CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCChhhHHHHHHHHH
Q 010342 416 SNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDS-GVTPNIVCYNVVIDGAC 467 (512)
Q Consensus 416 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~p~~~~~~~l~~~~~ 467 (512)
...|+..+..+++.+|+..|++..|.++++.+.+. +++.+..+|..|+.=+.
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAY 99 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 34677777778888887778888888877777653 55556677777765443
No 216
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=96.90 E-value=0.38 Score=45.00 Aligned_cols=61 Identities=15% Similarity=0.146 Sum_probs=26.6
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhh-HHHHHHHHHhcCChhhHHHHHHHHHH
Q 010342 30 VSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLT-YSVLVRGVLRTRDVERANVLMFKLWE 92 (512)
Q Consensus 30 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~ 92 (512)
..|+.|+.---.....+.+..+++.+... .|-..- |......-.+.|..+.+..++++.+.
T Consensus 46 ~~wt~li~~~~~~~~~~~~r~~y~~fL~k--yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~ 107 (577)
T KOG1258|consen 46 DAWTTLIQENDSIEDVDALREVYDIFLSK--YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQ 107 (577)
T ss_pred cchHHHHhccCchhHHHHHHHHHHHHHhh--CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 34444444433334444455555555533 233332 22222333344555555555555444
No 217
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.84 E-value=0.081 Score=43.50 Aligned_cols=66 Identities=20% Similarity=0.101 Sum_probs=39.4
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHHhhhcCCCCcchHhHHHHHHHHHccCChhHHHHHHHhcCCCCC
Q 010342 67 YSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKS 135 (512)
Q Consensus 67 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 135 (512)
+-.........|++++|...+.++..+.|.. .......-.++.++.+.|++++|...++++....+
T Consensus 8 lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s---~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP 73 (203)
T PF13525_consen 8 LYQKALEALQQGDYEEAIKLFEKLIDRYPNS---PYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYP 73 (203)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHH-TTS---TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-T
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC---hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC
Confidence 3344555667788888888888777766543 22233444566677777777777777777655443
No 218
>PRK15331 chaperone protein SicA; Provisional
Probab=96.81 E-value=0.15 Score=39.14 Aligned_cols=85 Identities=11% Similarity=-0.066 Sum_probs=37.9
Q ss_pred ccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHH
Q 010342 363 RLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVH 442 (512)
Q Consensus 363 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 442 (512)
..|++++|..+|+-+...+ +-+..-+..|..++-..+++++|...|......+ ..|...+-....++...|+.+.|..
T Consensus 49 ~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~~~~~A~~ 126 (165)
T PRK15331 49 NQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMRKAAKARQ 126 (165)
T ss_pred HCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhCCHHHHHH
Confidence 4455555555555444433 2233334444444444555555555554443322 2222233334444445555555555
Q ss_pred HHHHHHH
Q 010342 443 FLYELVD 449 (512)
Q Consensus 443 ~~~~~~~ 449 (512)
.|...++
T Consensus 127 ~f~~a~~ 133 (165)
T PRK15331 127 CFELVNE 133 (165)
T ss_pred HHHHHHh
Confidence 5544443
No 219
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.80 E-value=0.024 Score=41.89 Aligned_cols=81 Identities=14% Similarity=0.118 Sum_probs=39.7
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHhh--------------CCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhhcccC
Q 010342 280 ITLNTVINGFCKMGRIEEALKVLNDMVA--------------GKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQR 345 (512)
Q Consensus 280 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~--------------~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 345 (512)
.++..++.++++.|+.+....+++..=. .....|+..+..+++.+|+..+++..|+++++...+..
T Consensus 3 ~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y 82 (126)
T PF12921_consen 3 ELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKY 82 (126)
T ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHc
Confidence 4455566666666666666555544321 11223444444555555555555555555544444444
Q ss_pred CCCCChhhHHHHHHH
Q 010342 346 GYSPGIVTYNAVLRG 360 (512)
Q Consensus 346 ~~~~~~~~~~~l~~~ 360 (512)
+++.+..+|..|+..
T Consensus 83 ~I~i~~~~W~~Ll~W 97 (126)
T PF12921_consen 83 PIPIPKEFWRRLLEW 97 (126)
T ss_pred CCCCCHHHHHHHHHH
Confidence 444444444444443
No 220
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.79 E-value=0.24 Score=41.12 Aligned_cols=171 Identities=16% Similarity=0.095 Sum_probs=94.6
Q ss_pred cccCcHHHHHHHHHHHHhCCCC--CChHhHHHHHHHHHhcCChhHHHHHHHHHHhCC-CCCChhhHHHHHHHHHh-----
Q 010342 5 CGLSRVGEAHKLFFDMKSRGHV--PNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCG-VLPNSLTYSVLVRGVLR----- 76 (512)
Q Consensus 5 ~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~-~~~~~~~~~~l~~~~~~----- 76 (512)
++.|++++|.+.|+.+..+.+- -...+.-.++-++-+.++++.|+..+++..+.. -.||. -|...|.+...
T Consensus 45 L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~-dY~~YlkgLs~~~~i~ 123 (254)
T COG4105 45 LQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNA-DYAYYLKGLSYFFQID 123 (254)
T ss_pred HhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCh-hHHHHHHHHHHhccCC
Confidence 4678888899888888876221 123355666677778888888888888887753 22333 34444444432
Q ss_pred --cCChh---hHHHHHHHHHHHhhhcCCCCcchHhHHHHHHHHHccCChhHHHHHHHhcCCCCCCCcchhHHHHHHHHHh
Q 010342 77 --TRDVE---RANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCR 151 (512)
Q Consensus 77 --~~~~~---~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 151 (512)
.+|.. .|..-+.+++++.|.. ...++... -...+...- ...=..+.+.|.+
T Consensus 124 ~~~rDq~~~~~A~~~f~~~i~ryPnS-~Ya~dA~~-------------------~i~~~~d~L----A~~Em~IaryY~k 179 (254)
T COG4105 124 DVTRDQSAARAAFAAFKELVQRYPNS-RYAPDAKA-------------------RIVKLNDAL----AGHEMAIARYYLK 179 (254)
T ss_pred ccccCHHHHHHHHHHHHHHHHHCCCC-cchhhHHH-------------------HHHHHHHHH----HHHHHHHHHHHHH
Confidence 12222 2333344444444433 22232211 111000000 0001135677888
Q ss_pred cCChhhHHHHHHHHHHcCCCCCc---chHHHHHHHHhccCchhHHHHHHHHHH
Q 010342 152 SGRNHGASRVVYVMRKRGLTPSL---VSYNSIVHGLCKHGGCMRAYQLLEEGI 201 (512)
Q Consensus 152 ~~~~~~a~~~~~~~~~~g~~p~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~ 201 (512)
.|.+..|..-++.|.+. .+-+. ..+-.+..+|...|-.++|...-.-+.
T Consensus 180 r~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~ 231 (254)
T COG4105 180 RGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLG 231 (254)
T ss_pred hcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence 88888888888888775 22122 245566677777887777776655443
No 221
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.78 E-value=0.0055 Score=41.21 Aligned_cols=64 Identities=17% Similarity=0.110 Sum_probs=34.5
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHHHhhhcCCCCcc-hHhHHHHHHHHHccCChhHHHHHHHh
Q 010342 66 TYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVN-NAAFANLVDSLCREGYVNEVFRIAED 129 (512)
Q Consensus 66 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~ 129 (512)
+|+.+...+...|++++|...+++.++.....++..+. ..++..+...+...|++++|++.+++
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~ 71 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQK 71 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 45555566666666666666666655542222122222 34555566666666666666666654
No 222
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.68 E-value=0.45 Score=42.78 Aligned_cols=130 Identities=15% Similarity=0.178 Sum_probs=95.6
Q ss_pred hhhHHHHHHHHHccCCHHHHHHHHHHHHhCC-CCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHh-HHHHH
Q 010342 351 IVTYNAVLRGLFRLRRVEEAKEVFNCMLGIG-VVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYV-YAAMI 428 (512)
Q Consensus 351 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~l~ 428 (512)
...|...+..-.+..-++.|..+|-++.+.+ +.++..++++++..++ .|+...|..+|+--... -||... -+-.+
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl 473 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYL 473 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHH
Confidence 3456677777777788899999999998887 5677788888887665 57888888988876543 233333 35666
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 010342 429 KGLCRSGKIHEAVHFLYELVDSGVTPN--IVCYNVVIDGACKLSMKREAYQILREMRK 484 (512)
Q Consensus 429 ~~~~~~g~~~~a~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 484 (512)
.-+...++-+.|..+|+..++. +..+ ..+|..++.--..-|+...+..+-++|..
T Consensus 474 ~fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e 530 (660)
T COG5107 474 LFLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE 530 (660)
T ss_pred HHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH
Confidence 6777888888899999865543 1222 45788888888888888888887777765
No 223
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.67 E-value=0.17 Score=47.60 Aligned_cols=117 Identities=16% Similarity=0.155 Sum_probs=77.3
Q ss_pred cCCHHHHHHHHHHHHhCCCCCChHhHHH-HHHHHHhcCCHHHHHHHHHHhhcCCC---CCCHHhHHHHHHHHHhcCCHHH
Q 010342 364 LRRVEEAKEVFNCMLGIGVVADSTTYAI-VIDGLCESNQLDEAKRFWDDIVWPSN---IHDNYVYAAMIKGLCRSGKIHE 439 (512)
Q Consensus 364 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~ 439 (512)
..+.+.|.++++.+.+. -|+...|.. -.+.+...|++++|.+.++++..... +.....+--+...+....++++
T Consensus 246 ~~~~~~a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~ 323 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEE 323 (468)
T ss_pred CCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHH
Confidence 45677888888888875 355554433 34666778888999988887653111 1123345667777888889999
Q ss_pred HHHHHHHHHHCCCCCChhhHHHHHHHH-HhcCCH-------HHHHHHHHHHH
Q 010342 440 AVHFLYELVDSGVTPNIVCYNVVIDGA-CKLSMK-------REAYQILREMR 483 (512)
Q Consensus 440 a~~~~~~~~~~~~~p~~~~~~~l~~~~-~~~g~~-------~~a~~~~~~m~ 483 (512)
|.+.|..+.+.. ..+..+|..+..+| ...|+. ++|.+++.+..
T Consensus 324 A~~~f~~L~~~s-~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 324 AAEYFLRLLKES-KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHHHHHHHhcc-ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHH
Confidence 999999888764 33445555444333 456766 77888877764
No 224
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.66 E-value=0.0063 Score=40.92 Aligned_cols=61 Identities=18% Similarity=0.247 Sum_probs=34.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHC----CC-CCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010342 423 VYAAMIKGLCRSGKIHEAVHFLYELVDS----GV-TPN-IVCYNVVIDGACKLSMKREAYQILREMR 483 (512)
Q Consensus 423 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~-~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 483 (512)
+++.+...|...|++++|+..|++..+. |. .|+ ..++..+...+...|++++|++.+++..
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4555666666666666666666655432 11 111 3445666666666677777766666654
No 225
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=96.60 E-value=0.52 Score=42.50 Aligned_cols=422 Identities=14% Similarity=0.150 Sum_probs=206.1
Q ss_pred cHHHHHHHHHHHHhCCCCCChHhHHHHHHH--HHhcCChhHHHHHHHHHHhC--CCCC------------ChhhHHHHHH
Q 010342 9 RVGEAHKLFFDMKSRGHVPNVVSYTTLIHG--YCRTGEMDVAYKVFDEMRHC--GVLP------------NSLTYSVLVR 72 (512)
Q Consensus 9 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~~m~~~--~~~~------------~~~~~~~l~~ 72 (512)
+.+.-...+....+. .| ...|-.+..+ +-+.+++++|++.|..-... +..| |...=+..++
T Consensus 60 nld~Me~~l~~l~~~--~~-~s~~l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~ 136 (549)
T PF07079_consen 60 NLDLMEKQLMELRQQ--FG-KSAYLPLFKALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAH 136 (549)
T ss_pred hHHHHHHHHHHHHHh--cC-CchHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHH
Confidence 444444455555554 22 2345555444 34788999999988877654 2222 1112244567
Q ss_pred HHHhcCChhhHHHHHHHHHHHhhhcCCCCcchHhHHHHHHHHHccCChhHHHHHHHhcCCCCCCCcchhHHHHHHHHHhc
Q 010342 73 GVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRS 152 (512)
Q Consensus 73 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 152 (512)
++...|.+.+++.++++++.++-.. ...++..+|+.++-.+++.=-++- -+. ...++-|+ |--++-.|.+.
T Consensus 137 sLIe~g~f~EgR~iLn~i~~~llkr-E~~w~~d~yd~~vlmlsrSYfLEl----~e~-~s~dl~pd---yYemilfY~kk 207 (549)
T PF07079_consen 137 SLIETGRFSEGRAILNRIIERLLKR-ECEWNSDMYDRAVLMLSRSYFLEL----KES-MSSDLYPD---YYEMILFYLKK 207 (549)
T ss_pred HHHhcCCcchHHHHHHHHHHHHhhh-hhcccHHHHHHHHHHHhHHHHHHH----HHh-cccccChH---HHHHHHHHHHH
Confidence 8889999999999999998876554 567888889887766655321111 011 11111121 22233333222
Q ss_pred CChhhHHHHHHHHHHcCCCCCcchHHHHHHHHhc--cCchhHHHHHHHHHHhCCCCCchh-hHHHHHHHHhccCCHHHHH
Q 010342 153 GRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCK--HGGCMRAYQLLEEGIQFGYLPSEH-TYKVLVEGLCGESDLEKAR 229 (512)
Q Consensus 153 ~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~ 229 (512)
=..-++ -.=..+.|-......++....- .....--.++++.-...-+.|+.. ....+...+.. +.+++.
T Consensus 208 i~~~d~------~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~ 279 (549)
T PF07079_consen 208 IHAFDQ------RPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVG 279 (549)
T ss_pred HHHHhh------chHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHH
Confidence 100000 0000011111111111111111 111111222222222223344332 22233333332 445555
Q ss_pred HHHHHHHhCCCCC----CcccHHHHHHHHHccCChhhHHHHHHHHHhcCCCCChh-----hHHHHHHHHHh----cCCHH
Q 010342 230 KVLQFMLSKKDVD----RTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVI-----TLNTVINGFCK----MGRIE 296 (512)
Q Consensus 230 ~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-----~~~~l~~~~~~----~~~~~ 296 (512)
.+-+.+......+ -...+..++....+.++...|.+.+.-+....+..... +-..+-+..+. .-+..
T Consensus 280 ~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr 359 (549)
T PF07079_consen 280 HFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKILDPRISVSEKLLLSPKVLQDIVCEDDESYTKLR 359 (549)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCcchhhhhhhcCHHHHHHHHhcchHHHHHHH
Confidence 4444443321100 02345666666677777777777666655443221100 00111112221 11233
Q ss_pred HHHHHHHHHhhCCCCCCcHHHHHHHHH---HHhhcCC-HHHHHHHHHhhcccCCCCCChhhHHHHH----HHHHc---cC
Q 010342 297 EALKVLNDMVAGKFCAPDAVTFTTIIF---GLLNVGR-IQEALNLLYQVMPQRGYSPGIVTYNAVL----RGLFR---LR 365 (512)
Q Consensus 297 ~a~~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~l~----~~~~~---~~ 365 (512)
.-+.+|+.....+. .....-..++. -+-+.|. -++|+++++.+++-. +-|...-|.+. .+|.+ ..
T Consensus 360 ~yL~lwe~~qs~Di--DrqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft--~yD~ec~n~v~~fvKq~Y~qaLs~~ 435 (549)
T PF07079_consen 360 DYLNLWEEIQSYDI--DRQQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFT--NYDIECENIVFLFVKQAYKQALSMH 435 (549)
T ss_pred HHHHHHHHHHhhcc--cHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHHHHHHhhh
Confidence 34555555554331 12222222222 2233444 777888887755332 22322222221 22322 33
Q ss_pred CHHHHHHHHHHHHhCCCCCChH----hHHHHHHH--HHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHH
Q 010342 366 RVEEAKEVFNCMLGIGVVADST----TYAIVIDG--LCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHE 439 (512)
Q Consensus 366 ~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~--~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 439 (512)
.+.+-..+-+-+.+.|++|-.. .-|.|.++ +...|++.++.-.-.-+.+ +.|++.+|..+.-++....++++
T Consensus 436 ~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~e 513 (549)
T PF07079_consen 436 AIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQE 513 (549)
T ss_pred hHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHH
Confidence 4555555555566678777443 34444432 4567888887765444433 57899999999999999999999
Q ss_pred HHHHHHHHHHCCCCCChhhHHH
Q 010342 440 AVHFLYELVDSGVTPNIVCYNV 461 (512)
Q Consensus 440 a~~~~~~~~~~~~~p~~~~~~~ 461 (512)
|..++..+ +|+..+++.
T Consensus 514 A~~~l~~L-----P~n~~~~ds 530 (549)
T PF07079_consen 514 AWEYLQKL-----PPNERMRDS 530 (549)
T ss_pred HHHHHHhC-----CCchhhHHH
Confidence 99999764 777777764
No 226
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.58 E-value=0.83 Score=44.61 Aligned_cols=51 Identities=8% Similarity=0.117 Sum_probs=32.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHH
Q 010342 391 IVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLY 445 (512)
Q Consensus 391 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 445 (512)
-++..+.+..+.+.+..+.+..-+ .++..|..++..+++.+.++...+...
T Consensus 710 dl~~~~~q~~d~E~~it~~~~~g~----~~p~l~~~~L~yF~~~~~i~~~~~~v~ 760 (933)
T KOG2114|consen 710 DLMLYFQQISDPETVITLCERLGK----EDPSLWLHALKYFVSEESIEDCYEIVY 760 (933)
T ss_pred HHHHHHHHhhChHHHHHHHHHhCc----cChHHHHHHHHHHhhhcchhhHHHHHH
Confidence 355666677777777777776542 266677777777777775554444333
No 227
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=96.57 E-value=0.16 Score=36.97 Aligned_cols=139 Identities=12% Similarity=0.202 Sum_probs=78.3
Q ss_pred hcCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHccCCHHHH
Q 010342 291 KMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEA 370 (512)
Q Consensus 291 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 370 (512)
-.|..++..++..+... +.+..-++.++--....-+-+-..++++..-+-. |.. .+|+....
T Consensus 14 ldG~V~qGveii~k~v~----Ssni~E~NWvICNiiDaa~C~yvv~~LdsIGkiF----Dis----------~C~NlKrV 75 (161)
T PF09205_consen 14 LDGDVKQGVEIIEKTVN----SSNIKEYNWVICNIIDAADCDYVVETLDSIGKIF----DIS----------KCGNLKRV 75 (161)
T ss_dssp HTT-HHHHHHHHHHHHH----HS-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-----GG----------G-S-THHH
T ss_pred HhchHHHHHHHHHHHcC----cCCccccceeeeecchhhchhHHHHHHHHHhhhc----Cch----------hhcchHHH
Confidence 35778888888887776 3455566666666666666666666665532222 211 22333333
Q ss_pred HHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 010342 371 KEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDS 450 (512)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 450 (512)
..-+-.+ ..+......-+..+...|.-+.-.+++.++.+.+ .+++...-.+..+|.+.|+..++.+++.+.-+.
T Consensus 76 i~C~~~~-----n~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek 149 (161)
T PF09205_consen 76 IECYAKR-----NKLSEYVDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEK 149 (161)
T ss_dssp HHHHHHT-----T---HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred HHHHHHh-----cchHHHHHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 3332221 1233445556677777888888888888876533 677777888888888888888888888888887
Q ss_pred CCC
Q 010342 451 GVT 453 (512)
Q Consensus 451 ~~~ 453 (512)
|++
T Consensus 150 G~k 152 (161)
T PF09205_consen 150 GLK 152 (161)
T ss_dssp T-H
T ss_pred chH
Confidence 753
No 228
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.57 E-value=0.78 Score=44.17 Aligned_cols=117 Identities=12% Similarity=0.163 Sum_probs=88.7
Q ss_pred CCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhH
Q 010342 345 RGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVY 424 (512)
Q Consensus 345 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 424 (512)
.+..-...+.+--+.-+...|+..+|.++-.+.+ -||...|-.-+.+++..+++++-+++-+... ++.-|
T Consensus 678 ~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy 747 (829)
T KOG2280|consen 678 FGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGY 747 (829)
T ss_pred hccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCc
Confidence 3434444566677777888999999999887765 5788888888899999999998887776553 13467
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 010342 425 AAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILR 480 (512)
Q Consensus 425 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 480 (512)
.....+|.+.|+.++|.+++-+... . .-...+|.+.|++.+|.+.--
T Consensus 748 ~PFVe~c~~~~n~~EA~KYiprv~~-----l----~ekv~ay~~~~~~~eAad~A~ 794 (829)
T KOG2280|consen 748 LPFVEACLKQGNKDEAKKYIPRVGG-----L----QEKVKAYLRVGDVKEAADLAA 794 (829)
T ss_pred hhHHHHHHhcccHHHHhhhhhccCC-----h----HHHHHHHHHhccHHHHHHHHH
Confidence 7788999999999999998865421 1 156788888999888877643
No 229
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.47 E-value=0.4 Score=40.66 Aligned_cols=54 Identities=22% Similarity=0.219 Sum_probs=36.6
Q ss_pred HHhccCchhHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHh
Q 010342 183 GLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLS 237 (512)
Q Consensus 183 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 237 (512)
.....|++.+|..+|....+.. +-+...-..++.+|...|+.+.|..++..+..
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~ 196 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPL 196 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcc
Confidence 4456777777777777776653 23345556677777778888888877776653
No 230
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.45 E-value=0.06 Score=48.67 Aligned_cols=64 Identities=14% Similarity=0.052 Sum_probs=45.8
Q ss_pred ChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCh----HhHHHHHHHHHhcCCHHHHHHHHHHhhcC
Q 010342 350 GIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADS----TTYAIVIDGLCESNQLDEAKRFWDDIVWP 415 (512)
Q Consensus 350 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 415 (512)
+...++.+..+|...|++++|+..|++..+. .|+. .+|..+..+|...|++++|...++++++.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4556777777777788888888888777764 3443 24777777777788888888888777654
No 231
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.44 E-value=0.4 Score=39.32 Aligned_cols=25 Identities=8% Similarity=0.134 Sum_probs=12.6
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHH
Q 010342 32 YTTLIHGYCRTGEMDVAYKVFDEMR 56 (512)
Q Consensus 32 ~~~l~~~~~~~~~~~~a~~~~~~m~ 56 (512)
|..-..+|-...++++|...+.+..
T Consensus 34 yekAAvafRnAk~feKakdcLlkA~ 58 (308)
T KOG1585|consen 34 YEKAAVAFRNAKKFEKAKDCLLKAS 58 (308)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHH
Confidence 4444445555555555555554443
No 232
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.43 E-value=0.46 Score=40.33 Aligned_cols=123 Identities=15% Similarity=0.123 Sum_probs=54.7
Q ss_pred HHhccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHH
Q 010342 218 GLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEE 297 (512)
Q Consensus 218 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 297 (512)
.....|++.+|..+|+...... +.+......+..++...|+.+.|..++..+...--.........-+..+.+.....+
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~ 221 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPE 221 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCC
Confidence 3456677777777777766532 222444455555555555555555555544322211111111122222223222222
Q ss_pred HHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhhccc
Q 010342 298 ALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQ 344 (512)
Q Consensus 298 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 344 (512)
...+-.+.... +.|...-..+...+...|+.+.|++.+-.+++.
T Consensus 222 ~~~l~~~~aad---Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~ 265 (304)
T COG3118 222 IQDLQRRLAAD---PDDVEAALALADQLHLVGRNEAALEHLLALLRR 265 (304)
T ss_pred HHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 22222222221 224444444555555555555555555444433
No 233
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.39 E-value=0.63 Score=41.15 Aligned_cols=108 Identities=14% Similarity=0.196 Sum_probs=67.5
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHH
Q 010342 317 TFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGL 396 (512)
Q Consensus 317 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 396 (512)
+.+..+.-+...|+...|.++-.+ . + -|+..-|...+.+++..+++++...+... .-++.-|..++.+|
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~-F---k-v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~ 247 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKE-F---K-VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEAC 247 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHH-c---C-CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHH
Confidence 344445556666777776665443 2 2 36667777777777777777776665432 12345677777777
Q ss_pred HhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHH
Q 010342 397 CESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLY 445 (512)
Q Consensus 397 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 445 (512)
.+.|+..+|..+..++ .+..-+..|.+.|++.+|.+.-.
T Consensus 248 ~~~~~~~eA~~yI~k~----------~~~~rv~~y~~~~~~~~A~~~A~ 286 (319)
T PF04840_consen 248 LKYGNKKEASKYIPKI----------PDEERVEMYLKCGDYKEAAQEAF 286 (319)
T ss_pred HHCCCHHHHHHHHHhC----------ChHHHHHHHHHCCCHHHHHHHHH
Confidence 7777777777777663 11345566677777777766543
No 234
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=96.39 E-value=0.24 Score=36.17 Aligned_cols=140 Identities=16% Similarity=0.209 Sum_probs=81.1
Q ss_pred hhcCCHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHH
Q 010342 326 LNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEA 405 (512)
Q Consensus 326 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 405 (512)
.-.|..++..+++.+..... +..-+|.++--....-+-+-..++++..-+ -.|.. .+|++...
T Consensus 13 ildG~V~qGveii~k~v~Ss----ni~E~NWvICNiiDaa~C~yvv~~LdsIGk---iFDis----------~C~NlKrV 75 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNSS----NIKEYNWVICNIIDAADCDYVVETLDSIGK---IFDIS----------KCGNLKRV 75 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHHS-----HHHHTHHHHHHHHH--HHHHHHHHHHHGG---GS-GG----------G-S-THHH
T ss_pred HHhchHHHHHHHHHHHcCcC----CccccceeeeecchhhchhHHHHHHHHHhh---hcCch----------hhcchHHH
Confidence 44677777778777765433 333444444333333333444444444432 22222 23444444
Q ss_pred HHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 010342 406 KRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKN 485 (512)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 485 (512)
...+-.+ ..+......-+..+..+|+-+.-.+++..+.+.+ .+++...-.+..+|.+.|+..++.++++++.+.
T Consensus 76 i~C~~~~-----n~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek 149 (161)
T PF09205_consen 76 IECYAKR-----NKLSEYVDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEK 149 (161)
T ss_dssp HHHHHHT-----T---HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred HHHHHHh-----cchHHHHHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 4444333 2234456667788899999999999999988644 788999999999999999999999999999999
Q ss_pred CCC
Q 010342 486 GLN 488 (512)
Q Consensus 486 ~~~ 488 (512)
|++
T Consensus 150 G~k 152 (161)
T PF09205_consen 150 GLK 152 (161)
T ss_dssp T-H
T ss_pred chH
Confidence 864
No 235
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.39 E-value=0.13 Score=47.61 Aligned_cols=130 Identities=14% Similarity=0.092 Sum_probs=65.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhhcccCCCCCChhhHHHHHHH
Q 010342 281 TLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360 (512)
Q Consensus 281 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 360 (512)
..+.++..+.+.|-++.|+++...-. .-.....+.|+.+.|.++..+ .+++..|..|...
T Consensus 297 ~~~~i~~fL~~~G~~e~AL~~~~D~~-------------~rFeLAl~lg~L~~A~~~a~~-------~~~~~~W~~Lg~~ 356 (443)
T PF04053_consen 297 QGQSIARFLEKKGYPELALQFVTDPD-------------HRFELALQLGNLDIALEIAKE-------LDDPEKWKQLGDE 356 (443)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHSS-HH-------------HHHHHHHHCT-HHHHHHHCCC-------CSTHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHhhcCChH-------------HHhHHHHhcCCHHHHHHHHHh-------cCcHHHHHHHHHH
Confidence 35555666666666666665543211 122334556666666554322 2245566666666
Q ss_pred HHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHH
Q 010342 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEA 440 (512)
Q Consensus 361 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 440 (512)
....|+++-|+..|.+... +..|+-.|...|+.+.-.++.+.....| -++....++...|+.++.
T Consensus 357 AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~------~~n~af~~~~~lgd~~~c 421 (443)
T PF04053_consen 357 ALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERG------DINIAFQAALLLGDVEEC 421 (443)
T ss_dssp HHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHH
T ss_pred HHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHcc------CHHHHHHHHHHcCCHHHH
Confidence 6666666666666655432 3445555555666666555555555444 233344444445555555
Q ss_pred HHHHH
Q 010342 441 VHFLY 445 (512)
Q Consensus 441 ~~~~~ 445 (512)
.+++.
T Consensus 422 v~lL~ 426 (443)
T PF04053_consen 422 VDLLI 426 (443)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55443
No 236
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.36 E-value=0.71 Score=41.37 Aligned_cols=31 Identities=13% Similarity=0.190 Sum_probs=19.6
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 010342 420 DNYVYAAMIKGLCRSGKIHEAVHFLYELVDS 450 (512)
Q Consensus 420 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 450 (512)
+-..+.+++.++.-.|+.++|.+..++|.+.
T Consensus 304 dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 304 DYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 4444556666666667777777777766654
No 237
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.36 E-value=0.12 Score=44.39 Aligned_cols=151 Identities=13% Similarity=0.037 Sum_probs=100.1
Q ss_pred hcCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhhcccCCCCCChhhHHH----HHHHHHccCC
Q 010342 291 KMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNA----VLRGLFRLRR 366 (512)
Q Consensus 291 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~----l~~~~~~~~~ 366 (512)
-.|+..+|-..++++.+.. |.|...+.-.-.++...|+...-...+.+++..- .++...|.. +.-++...|-
T Consensus 115 ~~g~~h~a~~~wdklL~d~--PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~w--n~dlp~~sYv~GmyaFgL~E~g~ 190 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDDY--PTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKW--NADLPCYSYVHGMYAFGLEECGI 190 (491)
T ss_pred ccccccHHHHHHHHHHHhC--chhhhhhhhhhhHHHhccchhhhhhHHHHhcccc--CCCCcHHHHHHHHHHhhHHHhcc
Confidence 4577777777888888765 6777777777788888888888888887776543 344433332 2233456788
Q ss_pred HHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCC----CHHhHHHHHHHHHhcCCHHHHHH
Q 010342 367 VEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIH----DNYVYAAMIKGLCRSGKIHEAVH 442 (512)
Q Consensus 367 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~a~~ 442 (512)
+++|++.-++..+.+ +.|...-.++...+.-.|++.++.++..+-... ... -..-|-...-.+...+.++.|.+
T Consensus 191 y~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~-Wr~s~mlasHNyWH~Al~~iE~aeye~ale 268 (491)
T KOG2610|consen 191 YDDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDD-WRQSWMLASHNYWHTALFHIEGAEYEKALE 268 (491)
T ss_pred chhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccc-hhhhhHHHhhhhHHHHHhhhcccchhHHHH
Confidence 888888888877754 456666666777777788888888877765321 111 11233344445566678888888
Q ss_pred HHHHH
Q 010342 443 FLYEL 447 (512)
Q Consensus 443 ~~~~~ 447 (512)
+|+.=
T Consensus 269 IyD~e 273 (491)
T KOG2610|consen 269 IYDRE 273 (491)
T ss_pred HHHHH
Confidence 88653
No 238
>PRK11906 transcriptional regulator; Provisional
Probab=96.35 E-value=0.41 Score=43.62 Aligned_cols=148 Identities=13% Similarity=0.035 Sum_probs=93.8
Q ss_pred HHHHHHHHHhhcccCCCCCCh-hhHHHHHHHHH---------ccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcC
Q 010342 331 IQEALNLLYQVMPQRGYSPGI-VTYNAVLRGLF---------RLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESN 400 (512)
Q Consensus 331 ~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~---------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 400 (512)
.+.|+.+|.+........|+- ..|..+..++. ...+..+|.++-+...+.+ +.|+.....+..+....+
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhc
Confidence 456667777766444555553 22322222221 1234556777777777766 667788888888778888
Q ss_pred CHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHH
Q 010342 401 QLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTP-NIVCYNVVIDGACKLSMKREAYQIL 479 (512)
Q Consensus 401 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~ 479 (512)
+++.|...|++....+ +....+|......+.-.|+.++|.+.+++..+..+.- -.......+..|+..+ .++|.+++
T Consensus 353 ~~~~a~~~f~rA~~L~-Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 430 (458)
T PRK11906 353 QAKVSHILFEQAKIHS-TDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPNP-LKNNIKLY 430 (458)
T ss_pred chhhHHHHHHHHhhcC-CccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCCc-hhhhHHHH
Confidence 8999999999987764 4455567777777778899999999998877653221 1223333344666544 56677665
Q ss_pred HH
Q 010342 480 RE 481 (512)
Q Consensus 480 ~~ 481 (512)
-+
T Consensus 431 ~~ 432 (458)
T PRK11906 431 YK 432 (458)
T ss_pred hh
Confidence 43
No 239
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=96.34 E-value=0.067 Score=40.01 Aligned_cols=72 Identities=17% Similarity=0.184 Sum_probs=48.8
Q ss_pred cccCcHHHHHHHHHHHHhCCCC--CChHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHh
Q 010342 5 CGLSRVGEAHKLFFDMKSRGHV--PNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLR 76 (512)
Q Consensus 5 ~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~ 76 (512)
++.|++++|++.|+.+..+-+. -...+...|+.+|.+.+++++|...+++..+.+..--..-|...+.++..
T Consensus 21 l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~ 94 (142)
T PF13512_consen 21 LQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSY 94 (142)
T ss_pred HHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHH
Confidence 5678888888888888876211 13445677888888888888888888888876422222345555555443
No 240
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=96.32 E-value=1.3 Score=45.28 Aligned_cols=79 Identities=16% Similarity=0.104 Sum_probs=40.5
Q ss_pred HHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHH--hHHHHHHHHHhcC
Q 010342 358 LRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNY--VYAAMIKGLCRSG 435 (512)
Q Consensus 358 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g 435 (512)
...+...+.+++|--.|+..-+ ..--+.+|..+|++.+|..+..++.. ..+.. +-..|..-+..++
T Consensus 946 a~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~l~~a~ql~~---~~de~~~~a~~L~s~L~e~~ 1013 (1265)
T KOG1920|consen 946 ADHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWREALSLAAQLSE---GKDELVILAEELVSRLVEQR 1013 (1265)
T ss_pred HHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHHHHHHHhhcC---CHHHHHHHHHHHHHHHHHcc
Confidence 3334445555555555554322 12234556666666666666665531 11111 1244555666666
Q ss_pred CHHHHHHHHHHHH
Q 010342 436 KIHEAVHFLYELV 448 (512)
Q Consensus 436 ~~~~a~~~~~~~~ 448 (512)
+.-+|-++..+..
T Consensus 1014 kh~eAa~il~e~~ 1026 (1265)
T KOG1920|consen 1014 KHYEAAKILLEYL 1026 (1265)
T ss_pred cchhHHHHHHHHh
Confidence 6666666665544
No 241
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.30 E-value=0.064 Score=48.53 Aligned_cols=101 Identities=11% Similarity=0.074 Sum_probs=73.6
Q ss_pred CCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCH---HhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhH
Q 010342 383 VADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDN---YVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCY 459 (512)
Q Consensus 383 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~ 459 (512)
+.+...++.+..+|...|++++|...|++.++.+ +.+. .+|..+..+|...|+.++|++.+++.++.+ .| .|
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~-Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels-n~---~f 146 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALELN-PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY-NL---KF 146 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-ch---hH
Confidence 4566789999999999999999999999998764 2233 358999999999999999999999998852 11 23
Q ss_pred HHHHH--HHHhcCCHHHHHHHHHHHHHCCCC
Q 010342 460 NVVID--GACKLSMKREAYQILREMRKNGLN 488 (512)
Q Consensus 460 ~~l~~--~~~~~g~~~~a~~~~~~m~~~~~~ 488 (512)
..+.. .+....+.++..++++.+.+.|.+
T Consensus 147 ~~i~~DpdL~plR~~pef~eLlee~rk~G~~ 177 (453)
T PLN03098 147 STILNDPDLAPFRASPEFKELQEEARKGGED 177 (453)
T ss_pred HHHHhCcchhhhcccHHHHHHHHHHHHhCCc
Confidence 21111 111233445677788888877754
No 242
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.24 E-value=0.1 Score=46.10 Aligned_cols=95 Identities=9% Similarity=-0.028 Sum_probs=67.7
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhH-HHHHHH
Q 010342 387 TTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCY-NVVIDG 465 (512)
Q Consensus 387 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~-~~l~~~ 465 (512)
.++..|..+|.+.+++..|++.....+..+ ++|...+-.=..+|...|+++.|+..|+++++. .|+.... +-|+..
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~--~P~Nka~~~el~~l 334 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALKL--EPSNKAARAELIKL 334 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHH
Confidence 356677788888888888888888888776 677777777788888889999999999988886 4544443 344444
Q ss_pred HHhcCCH-HHHHHHHHHHHH
Q 010342 466 ACKLSMK-REAYQILREMRK 484 (512)
Q Consensus 466 ~~~~g~~-~~a~~~~~~m~~ 484 (512)
-.+.... ++..++|..|..
T Consensus 335 ~~k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 335 KQKIREYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 3333333 334677888764
No 243
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.11 E-value=0.19 Score=44.54 Aligned_cols=97 Identities=12% Similarity=0.062 Sum_probs=73.9
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHH
Q 010342 352 VTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGL 431 (512)
Q Consensus 352 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 431 (512)
.+++.+..++.+.+++..|+..-+..+..+ ++|....-.-..+|...|+++.|...|+++++.. +.|..+-+.|+.+-
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~-P~Nka~~~el~~l~ 335 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALKLE-PSNKAARAELIKLK 335 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHH
Confidence 466778888999999999999999999876 7788888888899999999999999999998764 44444445555444
Q ss_pred HhcCCH-HHHHHHHHHHHHC
Q 010342 432 CRSGKI-HEAVHFLYELVDS 450 (512)
Q Consensus 432 ~~~g~~-~~a~~~~~~~~~~ 450 (512)
.+..+. +...++|..|...
T Consensus 336 ~k~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 336 QKIREYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHHHHHHHHHHHhhc
Confidence 444433 3457788888753
No 244
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=96.08 E-value=1.3 Score=41.66 Aligned_cols=186 Identities=10% Similarity=-0.048 Sum_probs=106.6
Q ss_pred chhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChhhHHHHHHHHHhcCCCCChhhHHHHHH
Q 010342 208 SEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVIN 287 (512)
Q Consensus 208 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 287 (512)
+..+|..-+..-...|+.+.+.-+|+.... ....-...|-.++......|+.+-+..++....+...+..+.+--.-..
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli-~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~ 374 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLI-PCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEAR 374 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHh-HHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHH
Confidence 446788888888899999999999988763 2333345566666666666888888777777666544433332222222
Q ss_pred HHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCCHHHHH---HHHHhhcccCCCCCChhhHHHHHHH----
Q 010342 288 GFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEAL---NLLYQVMPQRGYSPGIVTYNAVLRG---- 360 (512)
Q Consensus 288 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~---~~~~~~~~~~~~~~~~~~~~~l~~~---- 360 (512)
..-..|++..|..+++.+.... +.-...-..-+....+.|..+.+. .++.... .. .-+..+...+.--
T Consensus 375 f~e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~-~~--~~~~~i~~~l~~~~~r~ 449 (577)
T KOG1258|consen 375 FEESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDANYKNELYSSIY-EG--KENNGILEKLYVKFARL 449 (577)
T ss_pred HHHhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhc-cc--ccCcchhHHHHHHHHHH
Confidence 2344578888888888887653 222222222333445566666655 3332211 11 1122222222211
Q ss_pred -HHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcC
Q 010342 361 -LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESN 400 (512)
Q Consensus 361 -~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 400 (512)
+.-.++.+.|..++.++... ++++...|..+++.....+
T Consensus 450 ~~~i~~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 450 RYKIREDADLARIILLEANDI-LPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HHHHhcCHHHHHHHHHHhhhc-CCccHHHHHHHHHHHHhCC
Confidence 22356777788887777765 3666666766666555444
No 245
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.07 E-value=0.097 Score=43.77 Aligned_cols=104 Identities=16% Similarity=0.161 Sum_probs=64.9
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCC--CCChhhHHHHHHHHHhcCChhhHHHHHHHHHHHhhhcCCCCcchHhHH
Q 010342 31 SYTTLIHGYCRTGEMDVAYKVFDEMRHCGV--LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFA 108 (512)
Q Consensus 31 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (512)
.|+.-+..+ +.|++..|...|....+... ...+..+..|..++...|+++.|...|..+.+..|.. .--+..+-
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s---~KApdall 219 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKS---PKAPDALL 219 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCC---CCChHHHH
Confidence 455555443 56667777777777766531 1122345567777777777777777777777666544 22334555
Q ss_pred HHHHHHHccCChhHHHHHHHhcCCCCCCCc
Q 010342 109 NLVDSLCREGYVNEVFRIAEDMPQGKSVNE 138 (512)
Q Consensus 109 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 138 (512)
-|.....+.|+-++|...|+++.+.-+..+
T Consensus 220 Klg~~~~~l~~~d~A~atl~qv~k~YP~t~ 249 (262)
T COG1729 220 KLGVSLGRLGNTDEACATLQQVIKRYPGTD 249 (262)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHCCCCH
Confidence 677777777777777777777766554433
No 246
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.05 E-value=0.2 Score=40.96 Aligned_cols=202 Identities=12% Similarity=0.092 Sum_probs=102.6
Q ss_pred cccccCcHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhh
Q 010342 3 QLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVER 82 (512)
Q Consensus 3 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~ 82 (512)
+|....++++|...+.+..+- ...|...|. ....++.|.-+.++|.+. +--...|......|...|..+.
T Consensus 40 afRnAk~feKakdcLlkA~~~-yEnnrslfh-------AAKayEqaamLake~~kl--sEvvdl~eKAs~lY~E~Gspdt 109 (308)
T KOG1585|consen 40 AFRNAKKFEKAKDCLLKASKG-YENNRSLFH-------AAKAYEQAAMLAKELSKL--SEVVDLYEKASELYVECGSPDT 109 (308)
T ss_pred HHHhhccHHHHHHHHHHHHHH-HHhcccHHH-------HHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHHHhCCcch
Confidence 455667788888877766632 121222222 122345555555555542 1122345555566666666666
Q ss_pred HHHHHHHHHHHhhhcCCCCcchH--hHHHHHHHHHccCChhHHHHHHHhcCCCCCCCcchhHHHHHHHHHhcCChhhHHH
Q 010342 83 ANVLMFKLWERMKEEEDLSVNNA--AFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASR 160 (512)
Q Consensus 83 a~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 160 (512)
|-..+.+.-+-+. +..|+.. .|..-+......++...|.++ +...-+.+.+...+++|-.
T Consensus 110 AAmaleKAak~le---nv~Pd~AlqlYqralavve~~dr~~ma~el---------------~gk~sr~lVrl~kf~Eaa~ 171 (308)
T KOG1585|consen 110 AAMALEKAAKALE---NVKPDDALQLYQRALAVVEEDDRDQMAFEL---------------YGKCSRVLVRLEKFTEAAT 171 (308)
T ss_pred HHHHHHHHHHHhh---cCCHHHHHHHHHHHHHHHhccchHHHHHHH---------------HHHhhhHhhhhHHhhHHHH
Confidence 6555544433222 2333321 122222222222333333332 2334445556666666554
Q ss_pred HHHHHHH----cCCCCCc-chHHHHHHHHhccCchhHHHHHHHHHHhCC---CCCchhhHHHHHHHHhccCCHHHHHHHH
Q 010342 161 VVYVMRK----RGLTPSL-VSYNSIVHGLCKHGGCMRAYQLLEEGIQFG---YLPSEHTYKVLVEGLCGESDLEKARKVL 232 (512)
Q Consensus 161 ~~~~~~~----~g~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 232 (512)
.|.+-.. -.-.|+. ..|...|-.+....++..|..+++.--+.+ -+-+..+...|+.+| ..||.+++.+++
T Consensus 172 a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 172 AFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKVL 250 (308)
T ss_pred HHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHHH
Confidence 4433221 1111222 346666667777788888888888754432 233566777788776 567888777765
Q ss_pred H
Q 010342 233 Q 233 (512)
Q Consensus 233 ~ 233 (512)
.
T Consensus 251 ~ 251 (308)
T KOG1585|consen 251 S 251 (308)
T ss_pred c
Confidence 4
No 247
>PRK11906 transcriptional regulator; Provisional
Probab=95.98 E-value=0.44 Score=43.48 Aligned_cols=140 Identities=11% Similarity=-0.005 Sum_probs=100.5
Q ss_pred CHHHHHHHHHHHHh-CCCCCC-hHhHHHHHHHHHh---------cCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhc
Q 010342 366 RVEEAKEVFNCMLG-IGVVAD-STTYAIVIDGLCE---------SNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRS 434 (512)
Q Consensus 366 ~~~~a~~~~~~~~~-~~~~~~-~~~~~~l~~~~~~---------~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 434 (512)
..+.|..+|.+... +...|+ ...|..+..++.. ..+..+|.++-++.++.+ +.|......+..+....
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhh
Confidence 35678888988882 223443 4455555544432 234567888888888877 77888888888888888
Q ss_pred CCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh---HHHHHHHHhhccCCCCCC
Q 010342 435 GKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDA---VTWRILDKLHGNRGNDFG 509 (512)
Q Consensus 435 g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~---~~~~~l~~~~~~~g~~~~ 509 (512)
++++.|...|++....++. ...+|......+.-.|+.++|.+.+++..+ +.|.. ......++.|+..+-+.+
T Consensus 352 ~~~~~a~~~f~rA~~L~Pn-~A~~~~~~~~~~~~~G~~~~a~~~i~~alr--LsP~~~~~~~~~~~~~~~~~~~~~~~ 426 (458)
T PRK11906 352 GQAKVSHILFEQAKIHSTD-IASLYYYRALVHFHNEKIEEARICIDKSLQ--LEPRRRKAVVIKECVDMYVPNPLKNN 426 (458)
T ss_pred cchhhHHHHHHHHhhcCCc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHhc--cCchhhHHHHHHHHHHHHcCCchhhh
Confidence 9999999999999887522 466777788888889999999999999766 56653 344445567766654443
No 248
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.94 E-value=1.7 Score=41.97 Aligned_cols=107 Identities=18% Similarity=0.233 Sum_probs=54.0
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHH
Q 010342 318 FTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLC 397 (512)
Q Consensus 318 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 397 (512)
.+--+.-+...|+-.+|.++-.+ .+ -||...|-.-+.+++..+++++-+++-+... .+.-|.-.+.+|.
T Consensus 687 l~dTv~~li~~g~~k~a~ql~~~-Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~ 755 (829)
T KOG2280|consen 687 LHDTVTTLILIGQNKRAEQLKSD-FK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACL 755 (829)
T ss_pred HHHHHHHHHHccchHHHHHHHHh-cC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHH
Confidence 33444445555555555554433 11 3455555555555555555555554433322 1334555555666
Q ss_pred hcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHH
Q 010342 398 ESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFL 444 (512)
Q Consensus 398 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 444 (512)
+.|+.++|.+++.+... .. -...+|.+.|++.+|.+.-
T Consensus 756 ~~~n~~EA~KYiprv~~-----l~----ekv~ay~~~~~~~eAad~A 793 (829)
T KOG2280|consen 756 KQGNKDEAKKYIPRVGG-----LQ----EKVKAYLRVGDVKEAADLA 793 (829)
T ss_pred hcccHHHHhhhhhccCC-----hH----HHHHHHHHhccHHHHHHHH
Confidence 66666666666655421 11 3445555556665555543
No 249
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.92 E-value=0.32 Score=45.16 Aligned_cols=156 Identities=11% Similarity=0.095 Sum_probs=92.5
Q ss_pred HHHhcCChhHHHHHHH--HHHhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHHHhhhcCCCCcchHhHHHHHHHHH
Q 010342 38 GYCRTGEMDVAYKVFD--EMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLC 115 (512)
Q Consensus 38 ~~~~~~~~~~a~~~~~--~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 115 (512)
...-.++++++.+..+ ++.. .+ +..-.+.+++.+.+.|..+.|+++...- + .-.+...
T Consensus 270 ~av~~~d~~~v~~~i~~~~ll~-~i--~~~~~~~i~~fL~~~G~~e~AL~~~~D~------------~-----~rFeLAl 329 (443)
T PF04053_consen 270 TAVLRGDFEEVLRMIAASNLLP-NI--PKDQGQSIARFLEKKGYPELALQFVTDP------------D-----HRFELAL 329 (443)
T ss_dssp HHHHTT-HHH-----HHHHTGG-G----HHHHHHHHHHHHHTT-HHHHHHHSS-H------------H-----HHHHHHH
T ss_pred HHHHcCChhhhhhhhhhhhhcc-cC--ChhHHHHHHHHHHHCCCHHHHHhhcCCh------------H-----HHhHHHH
Confidence 3445677777666664 1121 11 2444777778788888888887643221 1 2445667
Q ss_pred ccCChhHHHHHHHhcCCCCCCCcchhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHhccCchhHHHH
Q 010342 116 REGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQ 195 (512)
Q Consensus 116 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~ 195 (512)
+.|+++.|.++.++.. +...|..|.....+.|+++-|.+.|.+... |..|+-.|.-.|+.+...+
T Consensus 330 ~lg~L~~A~~~a~~~~------~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~k 394 (443)
T PF04053_consen 330 QLGNLDIALEIAKELD------DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSK 394 (443)
T ss_dssp HCT-HHHHHHHCCCCS------THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHH
T ss_pred hcCCHHHHHHHHHhcC------cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHH
Confidence 7888888888766654 455788888888888888888888776543 4556666677777777777
Q ss_pred HHHHHHhCCCCCchhhHHHHHHHHhccCCHHHHHHHHHH
Q 010342 196 LLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQF 234 (512)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 234 (512)
+.+.....| -++....++.-.|+.++..+++..
T Consensus 395 l~~~a~~~~------~~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 395 LAKIAEERG------DINIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp HHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred HHHHHHHcc------CHHHHHHHHHHcCCHHHHHHHHHH
Confidence 776666554 244455555566777777777654
No 250
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=95.70 E-value=0.21 Score=42.51 Aligned_cols=73 Identities=12% Similarity=0.194 Sum_probs=36.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCChhhHHH
Q 010342 388 TYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVD-----SGVTPNIVCYNV 461 (512)
Q Consensus 388 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~p~~~~~~~ 461 (512)
++..++..+...|+.+.+...++++.... +-+...|..++.+|.+.|+...|+..|+++.+ .|+.|...+...
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 44445555555555555555555555443 34444555555555555555555555544432 344444444433
No 251
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.66 E-value=0.93 Score=42.86 Aligned_cols=163 Identities=16% Similarity=0.103 Sum_probs=84.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcHH-----HHHHHHHHHhh----cCCHHHHHHHHHhhcccCCCCCChh
Q 010342 282 LNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAV-----TFTTIIFGLLN----VGRIQEALNLLYQVMPQRGYSPGIV 352 (512)
Q Consensus 282 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-----~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~ 352 (512)
+..++....-.||-+.+++.+.+..+.+.+..... .|..++..++. ....+.|.+++..+... -|+..
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~---yP~s~ 267 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR---YPNSA 267 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh---CCCcH
Confidence 34555555566777777777766655433222111 12222222222 34556666766664432 35544
Q ss_pred hHHHH-HHHHHccCCHHHHHHHHHHHHhCCC---CCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHH
Q 010342 353 TYNAV-LRGLFRLRRVEEAKEVFNCMLGIGV---VADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMI 428 (512)
Q Consensus 353 ~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 428 (512)
.|... .+.+...|+.++|++.|++...... +.....+--+...+...+++++|...|..+.+.+ ..+..+|..+.
T Consensus 268 lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~ 346 (468)
T PF10300_consen 268 LFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLA 346 (468)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHH
Confidence 44332 3445567777777777776543110 1122334445556666777777777777776644 33444444333
Q ss_pred H-HHHhcCCH-------HHHHHHHHHHH
Q 010342 429 K-GLCRSGKI-------HEAVHFLYELV 448 (512)
Q Consensus 429 ~-~~~~~g~~-------~~a~~~~~~~~ 448 (512)
. ++...|+. ++|.++|.+..
T Consensus 347 a~c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 347 AACLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHHHhhccchhhhhhHHHHHHHHHHHH
Confidence 3 23345655 66666666543
No 252
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=95.66 E-value=0.22 Score=39.64 Aligned_cols=101 Identities=15% Similarity=0.182 Sum_probs=69.6
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCh--hhHHHHHHHHHhcCChhhHHHHHHHHHHHhhhcCCCCcch--H
Q 010342 30 VSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNS--LTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNN--A 105 (512)
Q Consensus 30 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--~ 105 (512)
..+..+...|.+.|+.+.|++.|.++......+.. ..+..+|+.....+++..+...+.++-..+...++....+ .
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 46889999999999999999999999886544433 3567788888999999999888777755544422211111 1
Q ss_pred hHHHHHHHHHccCChhHHHHHHHhcCC
Q 010342 106 AFANLVDSLCREGYVNEVFRIAEDMPQ 132 (512)
Q Consensus 106 ~~~~l~~~~~~~g~~~~a~~~~~~~~~ 132 (512)
.|.. -.+...+++.+|-+.|-+...
T Consensus 117 ~~~g--L~~l~~r~f~~AA~~fl~~~~ 141 (177)
T PF10602_consen 117 VYEG--LANLAQRDFKEAAELFLDSLS 141 (177)
T ss_pred HHHH--HHHHHhchHHHHHHHHHccCc
Confidence 1222 223346778887777766543
No 253
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=95.59 E-value=0.056 Score=31.24 Aligned_cols=27 Identities=19% Similarity=0.213 Sum_probs=14.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 010342 458 CYNVVIDGACKLSMKREAYQILREMRK 484 (512)
Q Consensus 458 ~~~~l~~~~~~~g~~~~a~~~~~~m~~ 484 (512)
+|..+..+|.+.|++++|.++++++.+
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~ 29 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALA 29 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344555555555555555555555555
No 254
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.59 E-value=0.74 Score=35.14 Aligned_cols=66 Identities=20% Similarity=0.250 Sum_probs=32.4
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhc-CCHHHHHHHHHhhcccCCCCCChhhHHHHH
Q 010342 280 ITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNV-GRIQEALNLLYQVMPQRGYSPGIVTYNAVL 358 (512)
Q Consensus 280 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 358 (512)
.....+++.|.+.+.++++.-++.++.. +...+..+... ++++.|.+.+.+ ..++..|..++
T Consensus 70 yd~~~~~~~c~~~~l~~~~~~l~~k~~~----------~~~Al~~~l~~~~d~~~a~~~~~~-------~~~~~lw~~~~ 132 (140)
T smart00299 70 YDIEKVGKLCEKAKLYEEAVELYKKDGN----------FKDAIVTLIEHLGNYEKAIEYFVK-------QNNPELWAEVL 132 (140)
T ss_pred CCHHHHHHHHHHcCcHHHHHHHHHhhcC----------HHHHHHHHHHcccCHHHHHHHHHh-------CCCHHHHHHHH
Confidence 3344456666666666666666655431 11122222223 556666665543 12444555555
Q ss_pred HHHH
Q 010342 359 RGLF 362 (512)
Q Consensus 359 ~~~~ 362 (512)
..+.
T Consensus 133 ~~~l 136 (140)
T smart00299 133 KALL 136 (140)
T ss_pred HHHH
Confidence 5443
No 255
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.54 E-value=0.56 Score=39.43 Aligned_cols=96 Identities=18% Similarity=0.215 Sum_probs=57.5
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC---hHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCC--CCCHHhHHHH
Q 010342 353 TYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVAD---STTYAIVIDGLCESNQLDEAKRFWDDIVWPSN--IHDNYVYAAM 427 (512)
Q Consensus 353 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~l 427 (512)
.|+.-+.. .+.|++..|...|....+.. |-+ ...+-.|..++...|++++|..+|..+.+.-. +.-+..+--|
T Consensus 144 ~Y~~A~~~-~ksgdy~~A~~~F~~fi~~Y-P~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKl 221 (262)
T COG1729 144 LYNAALDL-YKSGDYAEAEQAFQAFIKKY-PNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKL 221 (262)
T ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHHcC-CCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence 45555553 35666777777777777642 222 23455566777777777777777776654321 1122355556
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHC
Q 010342 428 IKGLCRSGKIHEAVHFLYELVDS 450 (512)
Q Consensus 428 ~~~~~~~g~~~~a~~~~~~~~~~ 450 (512)
..+..+.|+.++|..+|+++.+.
T Consensus 222 g~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 222 GVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHH
Confidence 66666677777777777776665
No 256
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.39 E-value=0.67 Score=40.01 Aligned_cols=156 Identities=15% Similarity=0.069 Sum_probs=109.9
Q ss_pred HHccCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcH----HHHHHHHHHHhhcC
Q 010342 254 LCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDA----VTFTTIIFGLLNVG 329 (512)
Q Consensus 254 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~ 329 (512)
....|+..+|-..++++++.- +.|...+...=.+|.-.|+.+.-...++++...- .++. ..-..+..++...|
T Consensus 113 ~~~~g~~h~a~~~wdklL~d~-PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~w--n~dlp~~sYv~GmyaFgL~E~g 189 (491)
T KOG2610|consen 113 LWGRGKHHEAAIEWDKLLDDY-PTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKW--NADLPCYSYVHGMYAFGLEECG 189 (491)
T ss_pred hhccccccHHHHHHHHHHHhC-chhhhhhhhhhhHHHhccchhhhhhHHHHhcccc--CCCCcHHHHHHHHHHhhHHHhc
Confidence 345778888888888888764 4478888888889999999999999999887652 2333 33344556677899
Q ss_pred CHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhC---CCCCChHhHHHHHHHHHhcCCHHHHH
Q 010342 330 RIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGI---GVVADSTTYAIVIDGLCESNQLDEAK 406 (512)
Q Consensus 330 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~a~ 406 (512)
-+++|.+.-++.++-. +.|.-.-.++...+--.++.+++.++..+-... +--.-..-|-...-.+...+.++.|+
T Consensus 190 ~y~dAEk~A~ralqiN--~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~al 267 (491)
T KOG2610|consen 190 IYDDAEKQADRALQIN--RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKAL 267 (491)
T ss_pred cchhHHHHHHhhccCC--CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHH
Confidence 9999999888866443 445555667777777889999999987655431 11111223444455567779999999
Q ss_pred HHHHHhhc
Q 010342 407 RFWDDIVW 414 (512)
Q Consensus 407 ~~~~~~~~ 414 (512)
++|+.-+-
T Consensus 268 eIyD~ei~ 275 (491)
T KOG2610|consen 268 EIYDREIW 275 (491)
T ss_pred HHHHHHHH
Confidence 99987553
No 257
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=95.27 E-value=0.071 Score=30.81 Aligned_cols=27 Identities=22% Similarity=0.301 Sum_probs=13.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 010342 424 YAAMIKGLCRSGKIHEAVHFLYELVDS 450 (512)
Q Consensus 424 ~~~l~~~~~~~g~~~~a~~~~~~~~~~ 450 (512)
+..+...|...|++++|.++|+++++.
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 444445555555555555555555544
No 258
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=95.25 E-value=1.2 Score=38.98 Aligned_cols=85 Identities=15% Similarity=0.241 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHhCCCCCChHhHHHHHHHHHh--cC----ChhHHHHHHHHHHhCCC---CCChhhHHHHHHHHHhcCCh
Q 010342 10 VGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCR--TG----EMDVAYKVFDEMRHCGV---LPNSLTYSVLVRGVLRTRDV 80 (512)
Q Consensus 10 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~----~~~~a~~~~~~m~~~~~---~~~~~~~~~l~~~~~~~~~~ 80 (512)
+.+...+++.|.+.|++-+..+|-+....... .. ...+|..+|+.|++.+. .++..++..++.. ...+.
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 44567778888888888776555443333322 22 34568899999988752 3344555555443 44455
Q ss_pred hhHHHHHHHHHHHhhh
Q 010342 81 ERANVLMFKLWERMKE 96 (512)
Q Consensus 81 ~~a~~~~~~~~~~~~~ 96 (512)
+.-.+..+.+++.+..
T Consensus 156 e~l~~~~E~~Y~~L~~ 171 (297)
T PF13170_consen 156 EELAERMEQCYQKLAD 171 (297)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5444444444444433
No 259
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=95.21 E-value=1.6 Score=36.52 Aligned_cols=183 Identities=15% Similarity=0.106 Sum_probs=105.3
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-CcHHHHHHHHHHHhhcCCHHHHHHHHHhhcccCCCCCChhhHHHHH
Q 010342 280 ITLNTVINGFCKMGRIEEALKVLNDMVAGKFCA-PDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVL 358 (512)
Q Consensus 280 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 358 (512)
..|+. +..-.+.|++++|.+.|+.+....... -...+.-.++.++.+.++++.|+..+++.+...+-.|+. -|...|
T Consensus 36 ~LY~~-g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~-dY~~Yl 113 (254)
T COG4105 36 ELYNE-GLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNA-DYAYYL 113 (254)
T ss_pred HHHHH-HHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCh-hHHHHH
Confidence 33444 334566799999999999998765322 244556667778889999999999999988877777764 343444
Q ss_pred HHHHc-------cCCHHHHHHHH---HHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHH
Q 010342 359 RGLFR-------LRRVEEAKEVF---NCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMI 428 (512)
Q Consensus 359 ~~~~~-------~~~~~~a~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 428 (512)
.+++. ..|...+...+ ++++.. . ||.. =...|..-...+... -...=..+.
T Consensus 114 kgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~r-y-PnS~-------------Ya~dA~~~i~~~~d~----LA~~Em~Ia 174 (254)
T COG4105 114 KGLSYFFQIDDVTRDQSAARAAFAAFKELVQR-Y-PNSR-------------YAPDAKARIVKLNDA----LAGHEMAIA 174 (254)
T ss_pred HHHHHhccCCccccCHHHHHHHHHHHHHHHHH-C-CCCc-------------chhhHHHHHHHHHHH----HHHHHHHHH
Confidence 44432 22333333333 333332 1 2211 111111111111100 000112355
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCh---hhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 010342 429 KGLCRSGKIHEAVHFLYELVDSGVTPNI---VCYNVVIDGACKLSMKREAYQILREMRK 484 (512)
Q Consensus 429 ~~~~~~g~~~~a~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 484 (512)
+-|.+.|.+..|..-+++|++. .+-+. ..+-.+..+|.+.|..++|.+.-+-+..
T Consensus 175 ryY~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 175 RYYLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred HHHHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 6778888888888888888875 22222 3355667788888888888776655543
No 260
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.14 E-value=0.19 Score=42.05 Aligned_cols=72 Identities=22% Similarity=0.260 Sum_probs=40.2
Q ss_pred CcHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhc----------------CChhHHHHHHHHHHhCCCCCChhhHHHHH
Q 010342 8 SRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRT----------------GEMDVAYKVFDEMRHCGVLPNSLTYSVLV 71 (512)
Q Consensus 8 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------------~~~~~a~~~~~~m~~~~~~~~~~~~~~l~ 71 (512)
+.++=--..+..|.+.|+.-|..+|+.|+..+-+. .+-+-+++++++|...|+.||..+-..++
T Consensus 86 ~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lv 165 (406)
T KOG3941|consen 86 THVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILV 165 (406)
T ss_pred chHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHH
Confidence 33444444555566666666666666666654332 12233566666666666666666666666
Q ss_pred HHHHhcCC
Q 010342 72 RGVLRTRD 79 (512)
Q Consensus 72 ~~~~~~~~ 79 (512)
.++.+.+.
T Consensus 166 n~FGr~~~ 173 (406)
T KOG3941|consen 166 NAFGRWNF 173 (406)
T ss_pred HHhccccc
Confidence 66655444
No 261
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.12 E-value=1.2 Score=34.59 Aligned_cols=125 Identities=10% Similarity=0.062 Sum_probs=53.2
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhhcccCCCCCChhhHHHHHH--HHHccCCH
Q 010342 290 CKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLR--GLFRLRRV 367 (512)
Q Consensus 290 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~ 367 (512)
.+.+..++|+.-|..+.+.+.-.-.....-.......+.|+...|...|.++-....+|.-..-..-|=. .+...|.+
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy 148 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSY 148 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccH
Confidence 3445556666666665554421112222222233344555566666656553322211111101111111 12345555
Q ss_pred HHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhc
Q 010342 368 EEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVW 414 (512)
Q Consensus 368 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 414 (512)
+....-.+-+...+-+.-...-..|.-+-.+.|++.+|.+.|..+..
T Consensus 149 ~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 149 DDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 55555555444433222222334444444555555555555555543
No 262
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=95.04 E-value=1.1 Score=33.78 Aligned_cols=54 Identities=11% Similarity=0.047 Sum_probs=26.8
Q ss_pred HccCCHHHHHHHHHHHHhCCCCC---ChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCC
Q 010342 362 FRLRRVEEAKEVFNCMLGIGVVA---DSTTYAIVIDGLCESNQLDEAKRFWDDIVWPS 416 (512)
Q Consensus 362 ~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 416 (512)
.+.|++++|.+.|+.+... .+. ....--.|+.+|.+.+++++|...+++.++..
T Consensus 21 l~~~~Y~~A~~~le~L~~r-yP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLh 77 (142)
T PF13512_consen 21 LQKGNYEEAIKQLEALDTR-YPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLH 77 (142)
T ss_pred HHhCCHHHHHHHHHHHHhc-CCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 3555555565555555543 111 12233444555555555555555555555443
No 263
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.99 E-value=4.1 Score=40.20 Aligned_cols=175 Identities=10% Similarity=0.044 Sum_probs=92.3
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHH----HHHHhcCChhhHHHHHHHHHHHhhhcCCCCcchHhHH
Q 010342 33 TTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLV----RGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFA 108 (512)
Q Consensus 33 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~----~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (512)
..-+..+.+...++-|+.+-+.- + .|..+...+. .-+.+.|++++|...|-+.+. -+.|.
T Consensus 338 e~kL~iL~kK~ly~~Ai~LAk~~---~--~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~------~le~s----- 401 (933)
T KOG2114|consen 338 ETKLDILFKKNLYKVAINLAKSQ---H--LDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIG------FLEPS----- 401 (933)
T ss_pred HHHHHHHHHhhhHHHHHHHHHhc---C--CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcc------cCChH-----
Confidence 34455555556666666554432 2 2333333333 334457777777665544332 12222
Q ss_pred HHHHHHHccCChhHHHHHHHhcCCCCCCCcchhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHhccC
Q 010342 109 NLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHG 188 (512)
Q Consensus 109 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~ 188 (512)
.++.-|....+..+...+++.+.+.|. .+...-..|+.+|.+.++.+.-.+..+... .|.. ..-....+..+.+.+
T Consensus 402 ~Vi~kfLdaq~IknLt~YLe~L~~~gl-a~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~sn 477 (933)
T KOG2114|consen 402 EVIKKFLDAQRIKNLTSYLEALHKKGL-ANSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSN 477 (933)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHccc-ccchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhC
Confidence 256666666666666777777776665 344444567777877777776665554433 2211 112334455555555
Q ss_pred chhHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHH
Q 010342 189 GCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFM 235 (512)
Q Consensus 189 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 235 (512)
-.++|.-+-.... .+......++. ..+++++|.+.+..+
T Consensus 478 yl~~a~~LA~k~~-----~he~vl~ille---~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 478 YLDEAELLATKFK-----KHEWVLDILLE---DLHNYEEALRYISSL 516 (933)
T ss_pred hHHHHHHHHHHhc-----cCHHHHHHHHH---HhcCHHHHHHHHhcC
Confidence 5555554443321 23334444433 456777777777554
No 264
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=94.85 E-value=1.3 Score=38.81 Aligned_cols=159 Identities=10% Similarity=-0.044 Sum_probs=65.9
Q ss_pred hcCChhHHHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCChhhHHHHHHHHHHHhhhcCCCCcchHhHHHHHHHHHccC
Q 010342 41 RTGEMDVAYKVFDEMRHCG--VLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREG 118 (512)
Q Consensus 41 ~~~~~~~a~~~~~~m~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 118 (512)
...+.++|+..+.+-..+- ..-...+|-.+..+..+.|.+++++...-..++...+..+....-..|..+.+++-+.-
T Consensus 18 ~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~ 97 (518)
T KOG1941|consen 18 QSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLC 97 (518)
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555443320 00011234444455556666665544332222222222222222334444555555555
Q ss_pred ChhHHHHHHHhcCCC-CCCC---cchhHHHHHHHHHhcCChhhHHHHHHHHHHcC-----CCCCcchHHHHHHHHhccCc
Q 010342 119 YVNEVFRIAEDMPQG-KSVN---EEFACGHMIDSLCRSGRNHGASRVVYVMRKRG-----LTPSLVSYNSIVHGLCKHGG 189 (512)
Q Consensus 119 ~~~~a~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g-----~~p~~~~~~~l~~~~~~~~~ 189 (512)
++.+++.+-..-... |..| .-.....+..++...+.++++++.|+...+-. ......++..|...|.+..|
T Consensus 98 ~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D 177 (518)
T KOG1941|consen 98 EFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKD 177 (518)
T ss_pred HhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHh
Confidence 555555544432221 1111 01112223444455555555555555443311 01112345555555555555
Q ss_pred hhHHHHHHHH
Q 010342 190 CMRAYQLLEE 199 (512)
Q Consensus 190 ~~~a~~~~~~ 199 (512)
+++|.-+..+
T Consensus 178 ~~Kal~f~~k 187 (518)
T KOG1941|consen 178 YEKALFFPCK 187 (518)
T ss_pred hhHHhhhhHh
Confidence 5555544443
No 265
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=94.83 E-value=3.1 Score=37.93 Aligned_cols=65 Identities=14% Similarity=0.112 Sum_probs=36.0
Q ss_pred chhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCC---CcccHHHHHHHHHccCChhhHHHHHHHHHh
Q 010342 208 SEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVD---RTRICNIYLRALCLIKNPTELLNVLVFMLQ 272 (512)
Q Consensus 208 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 272 (512)
...++..++..+.+.|.++.|...+..+....... .+.+....++.....|+..+|+..++....
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33455566666666666666666666655432111 234444455555566666666666655554
No 266
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=94.76 E-value=0.57 Score=34.18 Aligned_cols=92 Identities=16% Similarity=0.170 Sum_probs=58.4
Q ss_pred HHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhhcccCCCCCCh--hhHHHHHHHHHccC
Q 010342 288 GFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGI--VTYNAVLRGLFRLR 365 (512)
Q Consensus 288 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~ 365 (512)
+.+..|+.+.|++.|.+....- +.....|+.-.+++.-.|+.++|++-+.+.++-.|-.... ..|..-...|-..|
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~--P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLA--PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhc--ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhC
Confidence 4566677888888877776543 5666777777777777777777777777766555433211 12222233455567
Q ss_pred CHHHHHHHHHHHHhCC
Q 010342 366 RVEEAKEVFNCMLGIG 381 (512)
Q Consensus 366 ~~~~a~~~~~~~~~~~ 381 (512)
+.+.|..-|+..-+.|
T Consensus 130 ~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 130 NDDAARADFEAAAQLG 145 (175)
T ss_pred chHHHHHhHHHHHHhC
Confidence 7777777777666655
No 267
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=94.72 E-value=1.4 Score=38.67 Aligned_cols=231 Identities=13% Similarity=0.037 Sum_probs=129.9
Q ss_pred HhccCCHHHHHHHHHHHHhCCC--CCCcccHHHHHHHHHccCChhhHHHHHHH----HHhcC-CCCChhhHHHHHHHHHh
Q 010342 219 LCGESDLEKARKVLQFMLSKKD--VDRTRICNIYLRALCLIKNPTELLNVLVF----MLQTQ-CQPDVITLNTVINGFCK 291 (512)
Q Consensus 219 ~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~----~~~~~-~~~~~~~~~~l~~~~~~ 291 (512)
+....+.++++..+.+...+-. ......+..+..+.++.|.+++++..--. ..+.. -..--..|..+.+++.+
T Consensus 16 Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~ 95 (518)
T KOG1941|consen 16 LYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEK 95 (518)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456778888888777664321 12234566666777777777766543211 11110 00012233444444444
Q ss_pred cCCHHHHHHHHHHHhhCCCCCC---cHHHHHHHHHHHhhcCCHHHHHHHHHhhcccCCCCC----ChhhHHHHHHHHHcc
Q 010342 292 MGRIEEALKVLNDMVAGKFCAP---DAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSP----GIVTYNAVLRGLFRL 364 (512)
Q Consensus 292 ~~~~~~a~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~ 364 (512)
.-++.+++.+-..-.......+ .......+..++...+.++++++.|+..++-..-.. ....+..|-..|.+.
T Consensus 96 l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l 175 (518)
T KOG1941|consen 96 LCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQL 175 (518)
T ss_pred HHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHH
Confidence 4455555555444443332222 123334566677777788888888887764332222 235677788888888
Q ss_pred CCHHHHHHHHHHHHh----CCCCCChHhH-----HHHHHHHHhcCCHHHHHHHHHHhhc----CCCCC-CHHhHHHHHHH
Q 010342 365 RRVEEAKEVFNCMLG----IGVVADSTTY-----AIVIDGLCESNQLDEAKRFWDDIVW----PSNIH-DNYVYAAMIKG 430 (512)
Q Consensus 365 ~~~~~a~~~~~~~~~----~~~~~~~~~~-----~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~-~~~~~~~l~~~ 430 (512)
.|+++|.-+..+..+ .++..-..-| ..+.-++...|.+..|.+..++..+ .|..+ .......+.+.
T Consensus 176 ~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDI 255 (518)
T KOG1941|consen 176 KDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADI 255 (518)
T ss_pred HhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 888888777666544 2222211122 2344566677888888887777643 33222 22345667778
Q ss_pred HHhcCCHHHHHHHHHHHHH
Q 010342 431 LCRSGKIHEAVHFLYELVD 449 (512)
Q Consensus 431 ~~~~g~~~~a~~~~~~~~~ 449 (512)
|...|+.+.|..-|++...
T Consensus 256 yR~~gd~e~af~rYe~Am~ 274 (518)
T KOG1941|consen 256 YRSRGDLERAFRRYEQAMG 274 (518)
T ss_pred HHhcccHhHHHHHHHHHHH
Confidence 8888888888777776654
No 268
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=94.67 E-value=0.39 Score=40.25 Aligned_cols=103 Identities=16% Similarity=0.150 Sum_probs=57.8
Q ss_pred CChHhHHHHHHHHHh-----cCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhh
Q 010342 384 ADSTTYAIVIDGLCE-----SNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVC 458 (512)
Q Consensus 384 ~~~~~~~~l~~~~~~-----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~ 458 (512)
-|..+|...+..+.. .+.++-....++.|.+-|+..|..+|+.|+..+-+..- .|. ..
T Consensus 65 RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkf----------------iP~-nv 127 (406)
T KOG3941|consen 65 RDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKF----------------IPQ-NV 127 (406)
T ss_pred ccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCccccc----------------ccH-HH
Confidence 355566666665543 24555566666677777777777777777766544321 111 11
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHhhccCC
Q 010342 459 YNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRG 505 (512)
Q Consensus 459 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g 505 (512)
+......|-++ -+-++.++++|...|+.||..+-..|+.++++.+
T Consensus 128 fQ~~F~HYP~Q--Q~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~ 172 (406)
T KOG3941|consen 128 FQKVFLHYPQQ--QNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWN 172 (406)
T ss_pred HHHHHhhCchh--hhHHHHHHHHHHHcCCCCchHHHHHHHHHhcccc
Confidence 11111112111 1236667777777777777777777777776644
No 269
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=94.65 E-value=1.6 Score=34.03 Aligned_cols=135 Identities=16% Similarity=0.226 Sum_probs=83.3
Q ss_pred HHHHHHHHhCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHHH
Q 010342 14 HKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWER 93 (512)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 93 (512)
.+.+..+.+.+++|+...+..++..+.+.|++..... +...++-+|.......+-.+ .+....+.++-.+++.+
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~q----llq~~Vi~DSk~lA~~LLs~--~~~~~~~~Ql~lDMLkR 87 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQ----LLQYHVIPDSKPLACQLLSL--GNQYPPAYQLGLDMLKR 87 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHH----HHhhcccCCcHHHHHHHHHh--HccChHHHHHHHHHHHH
Confidence 4556667778889999999999999999998666544 44555566666554443222 23445566665666665
Q ss_pred hhhcCCCCcchHhHHHHHHHHHccCChhHHHHHHHhcCCCCCCCcchhHHHHHHHHHhcCChhhHHHHHHHHHH
Q 010342 94 MKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRK 167 (512)
Q Consensus 94 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 167 (512)
+.. .+..+++.+...|++-+|.++.......... ....++.+..+.+|...-..+++-..+
T Consensus 88 L~~---------~~~~iievLL~~g~vl~ALr~ar~~~~~~~~----~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 88 LGT---------AYEEIIEVLLSKGQVLEALRYARQYHKVDSV----PARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred hhh---------hHHHHHHHHHhCCCHHHHHHHHHHcCCcccC----CHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 431 2344777888888888888888775432221 122355555555555555555544444
No 270
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=94.57 E-value=2.9 Score=36.59 Aligned_cols=24 Identities=4% Similarity=0.124 Sum_probs=13.1
Q ss_pred hHHHHHHHHHhcCCCCChhhHHHH
Q 010342 262 ELLNVLVFMLQTQCQPDVITLNTV 285 (512)
Q Consensus 262 ~a~~~~~~~~~~~~~~~~~~~~~l 285 (512)
.+..+++.+.+.++++....|..+
T Consensus 200 r~~~l~~~l~~~~~kik~~~yp~l 223 (297)
T PF13170_consen 200 RVIELYNALKKNGVKIKYMHYPTL 223 (297)
T ss_pred HHHHHHHHHHHcCCccccccccHH
Confidence 455555566666666555554443
No 271
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=94.50 E-value=3 Score=36.38 Aligned_cols=19 Identities=16% Similarity=-0.085 Sum_probs=12.5
Q ss_pred HHHhcCCHHHHHHHHHHHH
Q 010342 465 GACKLSMKREAYQILREMR 483 (512)
Q Consensus 465 ~~~~~g~~~~a~~~~~~m~ 483 (512)
.+.+.+++++|.++++-..
T Consensus 255 ~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 255 KHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHhhcCHHHHHHHHHHHH
Confidence 3455777777777777543
No 272
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=94.44 E-value=1.1 Score=32.88 Aligned_cols=53 Identities=21% Similarity=0.259 Sum_probs=26.6
Q ss_pred HHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 010342 396 LCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVD 449 (512)
Q Consensus 396 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 449 (512)
....|+++.|++.|.+.+..- +.....||.-..++.-+|+.++|.+-+++.++
T Consensus 53 laE~g~Ld~AlE~F~qal~l~-P~raSayNNRAQa~RLq~~~e~ALdDLn~Ale 105 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQALCLA-PERASAYNNRAQALRLQGDDEEALDDLNKALE 105 (175)
T ss_pred HHhccchHHHHHHHHHHHHhc-ccchHhhccHHHHHHHcCChHHHHHHHHHHHH
Confidence 344455555555555554332 33444555555555555555555555555544
No 273
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=94.43 E-value=0.64 Score=39.71 Aligned_cols=82 Identities=15% Similarity=0.086 Sum_probs=66.1
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHHHhhhcCCCCcchHhHHHH
Q 010342 31 SYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANL 110 (512)
Q Consensus 31 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l 110 (512)
++..++..+...|+++.+.+.++++.... +-+...|..++.+|.+.|+...|+..|.++.+.+.++.++.|...+....
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence 45667778888899999999999998875 45788899999999999999999999999888777777888876655444
Q ss_pred HHH
Q 010342 111 VDS 113 (512)
Q Consensus 111 ~~~ 113 (512)
.+.
T Consensus 234 ~~~ 236 (280)
T COG3629 234 EEI 236 (280)
T ss_pred HHH
Confidence 443
No 274
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.42 E-value=1.7 Score=33.16 Aligned_cols=85 Identities=18% Similarity=0.109 Sum_probs=42.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhhcccCCCCCChhhHHHHHHHHH
Q 010342 283 NTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLF 362 (512)
Q Consensus 283 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 362 (512)
..++..+...+........++.+...+ ..+....+.++..|++.+ ..+.++.+.. .++......+++.|.
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~--~~~~~~~~~li~ly~~~~-~~~ll~~l~~-------~~~~yd~~~~~~~c~ 80 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLN--SENPALQTKLIELYAKYD-PQKEIERLDN-------KSNHYDIEKVGKLCE 80 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccC--ccchhHHHHHHHHHHHHC-HHHHHHHHHh-------ccccCCHHHHHHHHH
Confidence 345555555566666666666665554 245555566666665442 2333333321 112233334555555
Q ss_pred ccCCHHHHHHHHHHH
Q 010342 363 RLRRVEEAKEVFNCM 377 (512)
Q Consensus 363 ~~~~~~~a~~~~~~~ 377 (512)
+.+-++.+..++.++
T Consensus 81 ~~~l~~~~~~l~~k~ 95 (140)
T smart00299 81 KAKLYEEAVELYKKD 95 (140)
T ss_pred HcCcHHHHHHHHHhh
Confidence 555555555555443
No 275
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=94.34 E-value=4.3 Score=37.58 Aligned_cols=61 Identities=20% Similarity=0.213 Sum_probs=46.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhh
Q 010342 281 TLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQV 341 (512)
Q Consensus 281 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 341 (512)
.-..+..++-+.|+.++|++.++++.+.............++.++...+.+.++..++.+.
T Consensus 261 ~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 261 AKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred hHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 3345677777889999999999999865421234556778899999999999999988774
No 276
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=94.27 E-value=3.4 Score=36.07 Aligned_cols=62 Identities=16% Similarity=0.196 Sum_probs=30.7
Q ss_pred hHHHHHHHHhccCCHHH---HHHHHHHHHhCCCCCCcccHHHHHHHHHccCChhhHHHHHHHHHhc
Q 010342 211 TYKVLVEGLCGESDLEK---ARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQT 273 (512)
Q Consensus 211 ~~~~l~~~~~~~g~~~~---a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 273 (512)
++..++.++...+..+. |.++++.+.. ..+..+.++..-+..+.+.++.+.+.+.+..|...
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~-e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLES-EYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHH-hCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 45555566655555433 3334444422 22333444444555555555556666666665554
No 277
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=94.26 E-value=1.9 Score=33.19 Aligned_cols=86 Identities=12% Similarity=0.002 Sum_probs=44.2
Q ss_pred HccCCHHHHHHHHHHHHhCCCCCChH-hHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHH
Q 010342 362 FRLRRVEEAKEVFNCMLGIGVVADST-TYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEA 440 (512)
Q Consensus 362 ~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 440 (512)
.+.++.+++..++..+.-. .|... .-..-...+...|++.+|..+++++... .|....-..|+..|....+-..-
T Consensus 21 l~~~~~~D~e~lL~ALrvL--RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~--~~~~p~~kALlA~CL~~~~D~~W 96 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVL--RPEFPELDLFDGWLHIVRGDWDDALRLLRELEER--APGFPYAKALLALCLYALGDPSW 96 (160)
T ss_pred HccCChHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc--CCCChHHHHHHHHHHHHcCChHH
Confidence 4566777777777777663 33332 2222334456677777777777776543 23333334444444433322223
Q ss_pred HHHHHHHHHCC
Q 010342 441 VHFLYELVDSG 451 (512)
Q Consensus 441 ~~~~~~~~~~~ 451 (512)
...-+++.+.+
T Consensus 97 r~~A~evle~~ 107 (160)
T PF09613_consen 97 RRYADEVLESG 107 (160)
T ss_pred HHHHHHHHhcC
Confidence 33333444443
No 278
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=94.20 E-value=5.6 Score=38.77 Aligned_cols=151 Identities=10% Similarity=0.025 Sum_probs=71.5
Q ss_pred hcCCHHHHHHHHHhhccc------CCCCCChhhHHHHHHHHHccC-----CHHHHHHHHHHHHhCCCCCChHhHHHHHHH
Q 010342 327 NVGRIQEALNLLYQVMPQ------RGYSPGIVTYNAVLRGLFRLR-----RVEEAKEVFNCMLGIGVVADSTTYAIVIDG 395 (512)
Q Consensus 327 ~~~~~~~a~~~~~~~~~~------~~~~~~~~~~~~l~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 395 (512)
...+.+.|+.+|....+. .+ .+.....+..+|.+.. +.+.|..++....+.| .|+....-..+..
T Consensus 261 ~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~ 336 (552)
T KOG1550|consen 261 VTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELG-NPDAQYLLGVLYE 336 (552)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcC-CchHHHHHHHHHH
Confidence 455566666666554331 22 2234445555555422 5566777777776665 3343332222222
Q ss_pred HHh-cCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHH----hcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcC
Q 010342 396 LCE-SNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLC----RSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLS 470 (512)
Q Consensus 396 ~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 470 (512)
... ..+...|.++|......|. ++ .+-.+..+|. ...+.+.|..++++..+.| .|....-...+..+.. +
T Consensus 337 ~g~~~~d~~~A~~yy~~Aa~~G~-~~--A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~ 411 (552)
T KOG1550|consen 337 TGTKERDYRRAFEYYSLAAKAGH-IL--AIYRLALCYELGLGVERNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-G 411 (552)
T ss_pred cCCccccHHHHHHHHHHHHHcCC-hH--HHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-c
Confidence 222 2356677777777766552 22 2222222221 1235667777777777666 3222222222222222 5
Q ss_pred CHHHHHHHHHHHHHCC
Q 010342 471 MKREAYQILREMRKNG 486 (512)
Q Consensus 471 ~~~~a~~~~~~m~~~~ 486 (512)
.++.+.-.+..+...|
T Consensus 412 ~~~~~~~~~~~~a~~g 427 (552)
T KOG1550|consen 412 RYDTALALYLYLAELG 427 (552)
T ss_pred cccHHHHHHHHHHHhh
Confidence 5555555554444443
No 279
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=93.80 E-value=0.0064 Score=46.82 Aligned_cols=50 Identities=8% Similarity=0.066 Sum_probs=24.0
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhhHH
Q 010342 35 LIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERAN 84 (512)
Q Consensus 35 l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 84 (512)
+++.+.+.+.+..+...++.+...+...+....+.++..|++.++.++..
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~ 62 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLL 62 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHH
Confidence 34444445555555555555554433334445555555555555444443
No 280
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=93.52 E-value=4 Score=34.30 Aligned_cols=202 Identities=18% Similarity=0.141 Sum_probs=115.2
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhhcccCCCCCChhhHHHHH
Q 010342 279 VITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVL 358 (512)
Q Consensus 279 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 358 (512)
...+......+...+.+..+...+...............+......+...+.+..+...+.......... ........
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 136 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP--DLAEALLA 136 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc--chHHHHHH
Confidence 3455555666666677777766666665410113445555556666666666777777766644221111 11122222
Q ss_pred H-HHHccCCHHHHHHHHHHHHhCCC--CCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCC-CHHhHHHHHHHHHhc
Q 010342 359 R-GLFRLRRVEEAKEVFNCMLGIGV--VADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIH-DNYVYAAMIKGLCRS 434 (512)
Q Consensus 359 ~-~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~ 434 (512)
. .+...|+++.+...+.+...... ......+......+...++.+.+...+....... +. ....+..+...+...
T Consensus 137 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 215 (291)
T COG0457 137 LGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLN-PDDDAEALLNLGLLYLKL 215 (291)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhC-cccchHHHHHhhHHHHHc
Confidence 2 56677777777777777754211 0122333334444566677777777777776543 23 355666777777777
Q ss_pred CCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 010342 435 GKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRK 484 (512)
Q Consensus 435 g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 484 (512)
++++.+...+......... ....+..+...+...+..+++...+.+...
T Consensus 216 ~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 216 GKYEEALEYYEKALELDPD-NAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred ccHHHHHHHHHHHHhhCcc-cHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 7777777777777664211 233444444444456667777777777665
No 281
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=93.46 E-value=0.21 Score=27.25 Aligned_cols=26 Identities=8% Similarity=-0.139 Sum_probs=18.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010342 458 CYNVVIDGACKLSMKREAYQILREMR 483 (512)
Q Consensus 458 ~~~~l~~~~~~~g~~~~a~~~~~~m~ 483 (512)
+|..|...|.+.|++++|++++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 36677788888888888888888754
No 282
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=93.38 E-value=0.13 Score=27.61 Aligned_cols=32 Identities=19% Similarity=0.259 Sum_probs=22.9
Q ss_pred HHHHHhCCCCCChHhHHHHHHHHHhcCChhHHH
Q 010342 17 FFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAY 49 (512)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 49 (512)
|++.++..+. |+.+|+.+...|...|++++|+
T Consensus 2 y~kAie~~P~-n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPN-NAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCC-CHHHHHHHHHHHHHCcCHHhhc
Confidence 4555555333 6778888888888888888875
No 283
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.26 E-value=3.1 Score=32.34 Aligned_cols=23 Identities=13% Similarity=0.057 Sum_probs=11.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhh
Q 010342 285 VINGFCKMGRIEEALKVLNDMVA 307 (512)
Q Consensus 285 l~~~~~~~~~~~~a~~~~~~~~~ 307 (512)
|.-+-.+.|++.+|.+.|.++..
T Consensus 173 LglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 173 LGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HhHHHHhccchHHHHHHHHHHHc
Confidence 33334445555555555555544
No 284
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=93.23 E-value=0.24 Score=27.03 Aligned_cols=24 Identities=17% Similarity=0.340 Sum_probs=14.6
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHH
Q 010342 32 YTTLIHGYCRTGEMDVAYKVFDEM 55 (512)
Q Consensus 32 ~~~l~~~~~~~~~~~~a~~~~~~m 55 (512)
|+.|...|.+.|++++|+++|++.
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~a 25 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQA 25 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 555666666666666666666663
No 285
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=93.20 E-value=4.9 Score=34.42 Aligned_cols=57 Identities=16% Similarity=0.218 Sum_probs=25.9
Q ss_pred CCcchHhHHHHHHHHHccCChhHHHHHHHhcCCC-CCCCcchhHHHHHHHHHhcCChh
Q 010342 100 LSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQG-KSVNEEFACGHMIDSLCRSGRNH 156 (512)
Q Consensus 100 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~ 156 (512)
..++..+...+++.++..+++...++..+..... ++..|...|..+|......|+..
T Consensus 198 ~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~ 255 (292)
T PF13929_consen 198 KSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQE 255 (292)
T ss_pred cCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHH
Confidence 4444444444555555555555555544443322 33334444444444444444443
No 286
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=93.07 E-value=7.5 Score=36.14 Aligned_cols=61 Identities=15% Similarity=0.065 Sum_probs=42.5
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHhCCCC-CChHhHHHHHHHHHhcCCHHHHHHHHHHhhcC
Q 010342 355 NAVLRGLFRLRRVEEAKEVFNCMLGIGVV-ADSTTYAIVIDGLCESNQLDEAKRFWDDIVWP 415 (512)
Q Consensus 355 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 415 (512)
..+..++-+.|+.++|.+.+++|.+.... .+..+...|+.++...+.+.++..++.+--+.
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi 324 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDI 324 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccc
Confidence 44556666788888888888888764211 23346677888888888888888888876443
No 287
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=93.04 E-value=7.2 Score=35.87 Aligned_cols=89 Identities=11% Similarity=-0.017 Sum_probs=46.2
Q ss_pred HHHhcCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHhccCchhHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCCHHH
Q 010342 148 SLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEK 227 (512)
Q Consensus 148 ~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 227 (512)
.+...|+++.+.+.+...... +.....+...+++.....|+++.|..+-+.|....+. ++.......-..-..|-+++
T Consensus 332 i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~ 409 (831)
T PRK15180 332 IFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDK 409 (831)
T ss_pred HHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccC-ChhheeeecccHHHHhHHHH
Confidence 344556666666666554432 2224445566666666666666666666666654432 22222222222233455666
Q ss_pred HHHHHHHHHhC
Q 010342 228 ARKVLQFMLSK 238 (512)
Q Consensus 228 a~~~~~~~~~~ 238 (512)
+.-.|+++...
T Consensus 410 ~~~~wk~~~~~ 420 (831)
T PRK15180 410 SYHYWKRVLLL 420 (831)
T ss_pred HHHHHHHHhcc
Confidence 66666666543
No 288
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=92.98 E-value=0.12 Score=27.78 Aligned_cols=20 Identities=20% Similarity=0.243 Sum_probs=7.8
Q ss_pred HHhHHHHHHHHHhcCCHHHH
Q 010342 421 NYVYAAMIKGLCRSGKIHEA 440 (512)
Q Consensus 421 ~~~~~~l~~~~~~~g~~~~a 440 (512)
...|..+...|...|++++|
T Consensus 13 ~~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 13 AEAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred HHHHHHHHHHHHHCcCHHhh
Confidence 33333344444444443333
No 289
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=92.95 E-value=0.47 Score=32.46 Aligned_cols=44 Identities=14% Similarity=0.138 Sum_probs=23.3
Q ss_pred HHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010342 440 AVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMR 483 (512)
Q Consensus 440 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 483 (512)
+.+-++.+....+-|++....+.+++|.+.+++..|.++++-.+
T Consensus 26 ~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 26 LRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 34444444444555555555555555555555555555555444
No 290
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=92.63 E-value=0.54 Score=37.49 Aligned_cols=88 Identities=15% Similarity=0.127 Sum_probs=60.6
Q ss_pred cccccCcHHHHHHHHHHHHhCCCCCC--hHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC-ChhhHHH--HHH--HHH
Q 010342 3 QLCGLSRVGEAHKLFFDMKSRGHVPN--VVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLP-NSLTYSV--LVR--GVL 75 (512)
Q Consensus 3 ~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~-~~~~~~~--l~~--~~~ 75 (512)
.|++.|+.++|.+.|.++.+....|. ...+-.+|......+++..+.....+....--.+ |...-+. ... .+.
T Consensus 45 ~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~~~gL~~l 124 (177)
T PF10602_consen 45 HYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKVYEGLANL 124 (177)
T ss_pred HHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHH
Confidence 57889999999999999998743332 4467888999999999999999888876532222 2222222 112 234
Q ss_pred hcCChhhHHHHHHHH
Q 010342 76 RTRDVERANVLMFKL 90 (512)
Q Consensus 76 ~~~~~~~a~~~~~~~ 90 (512)
..+++..|-+.+.+.
T Consensus 125 ~~r~f~~AA~~fl~~ 139 (177)
T PF10602_consen 125 AQRDFKEAAELFLDS 139 (177)
T ss_pred HhchHHHHHHHHHcc
Confidence 578888887766544
No 291
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=92.54 E-value=0.32 Score=25.93 Aligned_cols=27 Identities=15% Similarity=0.127 Sum_probs=13.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 010342 458 CYNVVIDGACKLSMKREAYQILREMRK 484 (512)
Q Consensus 458 ~~~~l~~~~~~~g~~~~a~~~~~~m~~ 484 (512)
+|..+..++...|++++|+..+++.++
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 344455555555555555555555544
No 292
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.39 E-value=12 Score=36.85 Aligned_cols=110 Identities=11% Similarity=0.015 Sum_probs=71.4
Q ss_pred ccccCcHHHHHHHHHHHHhCCCCC---ChHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCh
Q 010342 4 LCGLSRVGEAHKLFFDMKSRGHVP---NVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDV 80 (512)
Q Consensus 4 ~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~ 80 (512)
+.+.+.+++|.+..+..... .| -...+...|..+...|++++|-.+.-+|... +..-|-.-+.-+...++.
T Consensus 366 ll~~k~yeeAl~~~k~~~~~--~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e~~~l 439 (846)
T KOG2066|consen 366 LLEKKKYEEALDAAKASIGN--EERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAELDQL 439 (846)
T ss_pred HHHhhHHHHHHHHHHhccCC--ccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhcccccc
Confidence 56677888888888765543 33 2346788888889999999999988888753 566676666666666665
Q ss_pred hhHHHHHHHHHHHhhhcCCCCcchHhHHHHHHHHHccCChhHHHHHHH
Q 010342 81 ERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAE 128 (512)
Q Consensus 81 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 128 (512)
... ..-+|.. +...+...|..++..+.. .+...-.++..
T Consensus 440 ~~I-------a~~lPt~-~~rL~p~vYemvLve~L~-~~~~~F~e~i~ 478 (846)
T KOG2066|consen 440 TDI-------APYLPTG-PPRLKPLVYEMVLVEFLA-SDVKGFLELIK 478 (846)
T ss_pred chh-------hccCCCC-CcccCchHHHHHHHHHHH-HHHHHHHHHHH
Confidence 432 3334444 335566677777776666 44333333333
No 293
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=92.24 E-value=6.3 Score=33.20 Aligned_cols=192 Identities=9% Similarity=0.039 Sum_probs=93.5
Q ss_pred CChhhHHHHHHHHHHcCCCC---CcchHHHHHHHHhccCchhHHHHHHHHHHhC---CC--CCchhhHHHHHHHHhccCC
Q 010342 153 GRNHGASRVVYVMRKRGLTP---SLVSYNSIVHGLCKHGGCMRAYQLLEEGIQF---GY--LPSEHTYKVLVEGLCGESD 224 (512)
Q Consensus 153 ~~~~~a~~~~~~~~~~g~~p---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~--~~~~~~~~~l~~~~~~~g~ 224 (512)
.++++|+.-|++..+..... ...+.-.++....+.+++++..+.|.++... .+ ..+..+.++++.......+
T Consensus 41 ~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~ 120 (440)
T KOG1464|consen 41 DEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKN 120 (440)
T ss_pred cCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhh
Confidence 34555555555555431111 1112334555556666666666655555421 11 1233445555555555555
Q ss_pred HHHHHHHHHHHHh-----CCCCCCcccHHHHHHHHHccCChhhHHHHHHHHHhcCCCC-----------ChhhHHHHHHH
Q 010342 225 LEKARKVLQFMLS-----KKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQP-----------DVITLNTVING 288 (512)
Q Consensus 225 ~~~a~~~~~~~~~-----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-----------~~~~~~~l~~~ 288 (512)
.+.-..+++.-.+ ++...+..+-..+...|...+.+.+...++.++..+-... -...|..-|+.
T Consensus 121 m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQm 200 (440)
T KOG1464|consen 121 MDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQM 200 (440)
T ss_pred hHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhh
Confidence 4444444433221 1122222333445555555566666655555554321110 12355666777
Q ss_pred HHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHH----HHHHhhcCCHHHHHHHHHhhccc
Q 010342 289 FCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTI----IFGLLNVGRIQEALNLLYQVMPQ 344 (512)
Q Consensus 289 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l----~~~~~~~~~~~~a~~~~~~~~~~ 344 (512)
|....+-.....++++.......-|.+.....+ .....+.|++++|..-|.+..+.
T Consensus 201 YT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKN 260 (440)
T KOG1464|consen 201 YTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKN 260 (440)
T ss_pred hhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHHhc
Confidence 777777666667777665433324444433332 12345677777777666665543
No 294
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=91.96 E-value=0.41 Score=25.41 Aligned_cols=26 Identities=12% Similarity=0.102 Sum_probs=12.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 010342 459 YNVVIDGACKLSMKREAYQILREMRK 484 (512)
Q Consensus 459 ~~~l~~~~~~~g~~~~a~~~~~~m~~ 484 (512)
|..+...+...|++++|++.+++..+
T Consensus 4 ~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 4 WYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 44444555555555555555555444
No 295
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=91.91 E-value=0.0081 Score=46.24 Aligned_cols=46 Identities=13% Similarity=-0.005 Sum_probs=17.6
Q ss_pred HHhccCchhHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCCHHHH
Q 010342 183 GLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKA 228 (512)
Q Consensus 183 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 228 (512)
.+.+.+.......+++.+...+...+....+.++..|++.++.+..
T Consensus 16 ~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l 61 (143)
T PF00637_consen 16 AFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKL 61 (143)
T ss_dssp HCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHH
T ss_pred HHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHH
Confidence 3333444444444444444333233334444444444444333333
No 296
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=91.67 E-value=7.2 Score=32.69 Aligned_cols=200 Identities=19% Similarity=0.117 Sum_probs=118.5
Q ss_pred cHHHHHHHHHccCChhhHHHHHHHHHhc-CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHH-
Q 010342 246 ICNIYLRALCLIKNPTELLNVLVFMLQT-QCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIF- 323 (512)
Q Consensus 246 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~- 323 (512)
........+...+....+...+...... ........+......+...+.+..+...+........ .+.........
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 138 (291)
T COG0457 61 LLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDP--DPDLAEALLALG 138 (291)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCC--CcchHHHHHHHH
Confidence 3344444444455555555444444431 1223444555555666666677777777777765432 11122222222
Q ss_pred HHhhcCCHHHHHHHHHhhcccCCC--CCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCC-ChHhHHHHHHHHHhcC
Q 010342 324 GLLNVGRIQEALNLLYQVMPQRGY--SPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVA-DSTTYAIVIDGLCESN 400 (512)
Q Consensus 324 ~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g 400 (512)
.+...|+++.|...+.+... ... ......+......+...++.+.+...+....... +. ....+..+...+...+
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 216 (291)
T COG0457 139 ALYELGDYEEALELYEKALE-LDPELNELAEALLALGALLEALGRYEEALELLEKALKLN-PDDDAEALLNLGLLYLKLG 216 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHh-cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhC-cccchHHHHHhhHHHHHcc
Confidence 67777888888887777532 211 1122333333344566778888888888887753 33 3567777788888888
Q ss_pred CHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 010342 401 QLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDS 450 (512)
Q Consensus 401 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 450 (512)
+++.+...+....... +.....+..+...+...+..+.+...+.+....
T Consensus 217 ~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 217 KYEEALEYYEKALELD-PDNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred cHHHHHHHHHHHHhhC-cccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 8888888888887643 222344555555555667788888888887765
No 297
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=91.60 E-value=3.4 Score=28.82 Aligned_cols=44 Identities=14% Similarity=0.123 Sum_probs=20.1
Q ss_pred HHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010342 440 AVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMR 483 (512)
Q Consensus 440 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 483 (512)
..+-++.+....+-|++.+..+.+++|.|.+++..|.++++-.+
T Consensus 29 ~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK 72 (108)
T PF02284_consen 29 LRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIK 72 (108)
T ss_dssp HHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 33334444444455555555555555555555555555555544
No 298
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=91.57 E-value=1.8 Score=39.54 Aligned_cols=126 Identities=15% Similarity=0.101 Sum_probs=70.0
Q ss_pred HHHHhhcCCHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCC
Q 010342 322 IFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQ 401 (512)
Q Consensus 322 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 401 (512)
|.--...|+.-.|-+-+...+......|+.....+. .....|+++.+...+...... +.....+..++++...+.|+
T Consensus 296 i~k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~--i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r 372 (831)
T PRK15180 296 ITKQLADGDIIAASQQLFAALRNQQQDPVLIQLRSV--IFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLAR 372 (831)
T ss_pred HHHHhhccCHHHHHHHHHHHHHhCCCCchhhHHHHH--HHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhh
Confidence 334445666666666555555555444444333333 345567777777666555442 23344556666666667777
Q ss_pred HHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 010342 402 LDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSG 451 (512)
Q Consensus 402 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 451 (512)
++.|...-+-|....+ .+......-....-..|-++++...|+++...+
T Consensus 373 ~~~a~s~a~~~l~~ei-e~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~ 421 (831)
T PRK15180 373 WREALSTAEMMLSNEI-EDEEVLTVAAGSADALQLFDKSYHYWKRVLLLN 421 (831)
T ss_pred HHHHHHHHHHHhcccc-CChhheeeecccHHHHhHHHHHHHHHHHHhccC
Confidence 7777776666654432 233343333333444566677777776666554
No 299
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=91.08 E-value=5.9 Score=30.63 Aligned_cols=18 Identities=6% Similarity=-0.010 Sum_probs=8.9
Q ss_pred HccCCHHHHHHHHHHHHh
Q 010342 362 FRLRRVEEAKEVFNCMLG 379 (512)
Q Consensus 362 ~~~~~~~~a~~~~~~~~~ 379 (512)
.+.|++.+|..+|+++.+
T Consensus 55 i~r~~w~dA~rlLr~l~~ 72 (160)
T PF09613_consen 55 IVRGDWDDALRLLRELEE 72 (160)
T ss_pred HHhCCHHHHHHHHHHHhc
Confidence 344555555555555443
No 300
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=91.02 E-value=5.6 Score=30.22 Aligned_cols=53 Identities=13% Similarity=0.092 Sum_probs=33.4
Q ss_pred HccCCHHHHHHHHHHHHhCCCCCChH-hHHHHHHHHHhcCCHHHHHHHHHHhhcCC
Q 010342 362 FRLRRVEEAKEVFNCMLGIGVVADST-TYAIVIDGLCESNQLDEAKRFWDDIVWPS 416 (512)
Q Consensus 362 ~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 416 (512)
...++.+++..+++.|.-. .|+.. .-..-...+...|++++|.++++++.+.+
T Consensus 21 L~~~d~~D~e~lLdALrvL--rP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 21 LRSADPYDAQAMLDALRVL--RPNLKELDMFDGWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred HhcCCHHHHHHHHHHHHHh--CCCccccchhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence 3477788888888777764 33322 22223344667788888888888876543
No 301
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=90.91 E-value=14 Score=34.49 Aligned_cols=98 Identities=15% Similarity=0.097 Sum_probs=65.4
Q ss_pred CCChHhH-HHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHH---HhcCCHHHHHHHHHHHHH-CCCCCChh
Q 010342 383 VADSTTY-AIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGL---CRSGKIHEAVHFLYELVD-SGVTPNIV 457 (512)
Q Consensus 383 ~~~~~~~-~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~g~~~~a~~~~~~~~~-~~~~p~~~ 457 (512)
.|+..++ +.+++-+...|-..+|..++..+.... +|+...|..++..= ..+| ..-+.+.++.+.. -| .++.
T Consensus 456 ~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~lp-p~sl~l~r~miq~e~~~~sc~-l~~~r~~yd~a~~~fg--~d~~ 531 (568)
T KOG2396|consen 456 GADSVTLKSKYLDWAYESGGYKKARKVYKSLQELP-PFSLDLFRKMIQFEKEQESCN-LANIREYYDRALREFG--ADSD 531 (568)
T ss_pred CCceeehhHHHHHHHHHhcchHHHHHHHHHHHhCC-CccHHHHHHHHHHHhhHhhcC-chHHHHHHHHHHHHhC--CChH
Confidence 4454443 456677777777888888888876553 66667777776532 2223 6667777777765 35 5667
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 010342 458 CYNVVIDGACKLSMKREAYQILREMRK 484 (512)
Q Consensus 458 ~~~~l~~~~~~~g~~~~a~~~~~~m~~ 484 (512)
.|.-.+.--...|..+.+-.++.++.+
T Consensus 532 lw~~y~~~e~~~g~~en~~~~~~ra~k 558 (568)
T KOG2396|consen 532 LWMDYMKEELPLGRPENCGQIYWRAMK 558 (568)
T ss_pred HHHHHHHhhccCCCcccccHHHHHHHH
Confidence 777777776778888888887766654
No 302
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=90.67 E-value=10 Score=32.63 Aligned_cols=65 Identities=15% Similarity=0.063 Sum_probs=34.1
Q ss_pred CCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhC-CCCCChHhHHHHHHHHHhcCCHHHHHHHHH
Q 010342 346 GYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGI-GVVADSTTYAIVIDGLCESNQLDEAKRFWD 410 (512)
Q Consensus 346 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 410 (512)
+..++..+...++..++..+++.+-.++++..... +...|...|..+++.....|+..-...+..
T Consensus 197 ~~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~ 262 (292)
T PF13929_consen 197 SKSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIID 262 (292)
T ss_pred ccCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhh
Confidence 33445555555555555556666555555555443 334445555555555555555544444443
No 303
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.46 E-value=7.1 Score=33.78 Aligned_cols=101 Identities=17% Similarity=0.151 Sum_probs=54.8
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC--CCcHHHHHHHHHHHhhcCCHHHHHHHHHhhcccCCCCCChhhH
Q 010342 277 PDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFC--APDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTY 354 (512)
Q Consensus 277 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 354 (512)
....+...++..-....+++.+...+-++...... .++. +-.++++.+ ..-++++++.++..-+ ..|+-||..++
T Consensus 62 ~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~-~~~~~irll-lky~pq~~i~~l~npI-qYGiF~dqf~~ 138 (418)
T KOG4570|consen 62 VSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNW-TIHTWIRLL-LKYDPQKAIYTLVNPI-QYGIFPDQFTF 138 (418)
T ss_pred cceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccc-cHHHHHHHH-HccChHHHHHHHhCcc-hhccccchhhH
Confidence 34444445554444556666666666666543210 0111 111222222 2234556666665533 66777777777
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHhC
Q 010342 355 NAVLRGLFRLRRVEEAKEVFNCMLGI 380 (512)
Q Consensus 355 ~~l~~~~~~~~~~~~a~~~~~~~~~~ 380 (512)
+.+|..+.+.+++.+|..+.-.|...
T Consensus 139 c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 139 CLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 77777777777777777766665543
No 304
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.22 E-value=3 Score=39.42 Aligned_cols=100 Identities=18% Similarity=0.133 Sum_probs=55.2
Q ss_pred ccCchhHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChhhHHH
Q 010342 186 KHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLN 265 (512)
Q Consensus 186 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 265 (512)
+.|+.+.|.++..+. .+..-|..|.++....|++..|.+.|..... +..++..+...|+.+....
T Consensus 649 ~lgrl~iA~~la~e~------~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~ 713 (794)
T KOG0276|consen 649 KLGRLDIAFDLAVEA------NSEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAV 713 (794)
T ss_pred hcCcHHHHHHHHHhh------cchHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHH
Confidence 455666666554442 3344566666666666666666666655432 3344555555555555555
Q ss_pred HHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHh
Q 010342 266 VLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMV 306 (512)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 306 (512)
+-....+.|.. | .-.-+|...|+++++.+++..-.
T Consensus 714 la~~~~~~g~~-N-----~AF~~~~l~g~~~~C~~lLi~t~ 748 (794)
T KOG0276|consen 714 LASLAKKQGKN-N-----LAFLAYFLSGDYEECLELLISTQ 748 (794)
T ss_pred HHHHHHhhccc-c-----hHHHHHHHcCCHHHHHHHHHhcC
Confidence 54445444432 2 22334556677777777776543
No 305
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=89.88 E-value=8.1 Score=30.29 Aligned_cols=35 Identities=9% Similarity=0.200 Sum_probs=20.3
Q ss_pred HHHHHHhCCCCCChhhHHHHHHHHHhcCChhhHHH
Q 010342 51 VFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANV 85 (512)
Q Consensus 51 ~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 85 (512)
.+..+.+.+++|+...+..++..+.+.|.+....+
T Consensus 16 YirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~q 50 (167)
T PF07035_consen 16 YIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQ 50 (167)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 33344445666666666666666666666554433
No 306
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=89.78 E-value=1.1 Score=23.77 Aligned_cols=28 Identities=14% Similarity=0.282 Sum_probs=18.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 010342 423 VYAAMIKGLCRSGKIHEAVHFLYELVDS 450 (512)
Q Consensus 423 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 450 (512)
+|..+..+|...|++++|+..|++.++.
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 4566666677777777777777666654
No 307
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.74 E-value=17 Score=33.75 Aligned_cols=458 Identities=12% Similarity=0.028 Sum_probs=211.5
Q ss_pred HHHHhcC--ChhHHHHHHHHHHhCCCCCC--hhhHHHHHHHH-HhcCChhhHHHHHHHHHHHhhhcCCC-CcchHhHHHH
Q 010342 37 HGYCRTG--EMDVAYKVFDEMRHCGVLPN--SLTYSVLVRGV-LRTRDVERANVLMFKLWERMKEEEDL-SVNNAAFANL 110 (512)
Q Consensus 37 ~~~~~~~--~~~~a~~~~~~m~~~~~~~~--~~~~~~l~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~~l 110 (512)
..+-..| +..++++.++......++-- ..+...+...+ .-..+++.|..-+++.|..+..-+.. .....+++.|
T Consensus 15 e~~rt~~PPkIkk~IkClqA~~~~~is~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fydvKf~a~SlL 94 (629)
T KOG2300|consen 15 EHFRTSGPPKIKKCIKCLQAIFQFQISFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYDVKFQAASLL 94 (629)
T ss_pred HHHhhcCChhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHhhhhHHHHHH
Confidence 3444555 55667777776665432111 12333333333 33677888888888888766554433 3333456667
Q ss_pred HHHHHccC-ChhHHHHHHHhcCCCCCCCcchh---HHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHh-
Q 010342 111 VDSLCREG-YVNEVFRIAEDMPQGKSVNEEFA---CGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLC- 185 (512)
Q Consensus 111 ~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~- 185 (512)
.+.|.... .+..+..++....+-........ ...|+..+.-..++..|.+++.---.. -.|-...|..++..+.
T Consensus 95 a~lh~~~~~s~~~~KalLrkaielsq~~p~wsckllfQLaql~~idkD~~sA~elLavga~s-Ad~~~~~ylr~~ftls~ 173 (629)
T KOG2300|consen 95 AHLHHQLAQSFPPAKALLRKAIELSQSVPYWSCKLLFQLAQLHIIDKDFPSALELLAVGAES-ADHICFPYLRMLFTLSM 173 (629)
T ss_pred HHHHHHhcCCCchHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhhhccchhHHHHHhccccc-cchhhhHHHHHHHHHHH
Confidence 77777665 66677766665433211111122 223455666677888887774332221 1112223332222211
Q ss_pred --------ccCchhHHHHHHHHHHhCCCCCchhh--------HHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCcccHHH
Q 010342 186 --------KHGGCMRAYQLLEEGIQFGYLPSEHT--------YKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNI 249 (512)
Q Consensus 186 --------~~~~~~~a~~~~~~~~~~~~~~~~~~--------~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 249 (512)
+..++..+.....++.+. ..+|..- .+.-+..|...|+...+...++++...-....+..+..
T Consensus 174 ~~ll~me~d~~dV~~ll~~~~qi~~n-~~sdk~~~E~LkvFyl~lql~yy~~~gq~rt~k~~lkQLQ~siqtist~~~~h 252 (629)
T KOG2300|consen 174 LMLLIMERDDYDVEKLLQRCGQIWQN-ISSDKTQKEMLKVFYLVLQLSYYLLPGQVRTVKPALKQLQDSIQTISTSSRGH 252 (629)
T ss_pred HHHHHhCccHHHHHHHHHHHHHHHhc-cCCChHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHHHhccCCCCCCc
Confidence 122334444444555543 3444322 12223344566777777766666644211111100000
Q ss_pred HHHHHHccCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHH-------HHHHHHhhCCCCCCcH-----HH
Q 010342 250 YLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEAL-------KVLNDMVAGKFCAPDA-----VT 317 (512)
Q Consensus 250 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~-------~~~~~~~~~~~~~~~~-----~~ 317 (512)
-... .|.+ -...+..+.+..+ ..-+|......-...|-+++|. ...++..+...+.|-. .+
T Consensus 253 ~e~i---lgsp--s~~l~~wlpkeqi--caLV~l~tv~hsm~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~ 325 (629)
T KOG2300|consen 253 DEKI---LGSP--SPILFEWLPKEQI--CALVYLVTVIHSMPAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMIL 325 (629)
T ss_pred cccc---cCCC--ChHHHhhccHhhh--HhhhhhhHHhhhhhhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHH
Confidence 0000 0000 0001111100000 0001100000001123333333 3333333322111111 11
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhhcccCCCCCChhh-------HHHHH-HHHHccCCHHHHHHHHHHHHhCCCCCChHh-
Q 010342 318 FTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVT-------YNAVL-RGLFRLRRVEEAKEVFNCMLGIGVVADSTT- 388 (512)
Q Consensus 318 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-------~~~l~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~- 388 (512)
...++.+-.-.|++.+|++-+.++..-..-.|.+.. ...++ ..++..+.++.|+.-|....+.--..|...
T Consensus 326 LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~ 405 (629)
T KOG2300|consen 326 LEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAF 405 (629)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHH
Confidence 222233334578888888877765443333444211 12222 334557788888888877766432333332
Q ss_pred -HHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHH----------HHHHHHHhcCCHHHHHHHHHHHHHCC-----C
Q 010342 389 -YAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYA----------AMIKGLCRSGKIHEAVHFLYELVDSG-----V 452 (512)
Q Consensus 389 -~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~----------~l~~~~~~~g~~~~a~~~~~~~~~~~-----~ 452 (512)
-..+.-.|.+.|+-+.-.++++.+- +++..++. .-.--....+++.+|..++.+-.+-. .
T Consensus 406 ~nlnlAi~YL~~~~~ed~y~~ld~i~----p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~ 481 (629)
T KOG2300|consen 406 CNLNLAISYLRIGDAEDLYKALDLIG----PLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLN 481 (629)
T ss_pred HHHhHHHHHHHhccHHHHHHHHHhcC----CCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHH
Confidence 2345567888888777777777664 22222111 11111235789999999988876531 1
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHH-HCCCCCChHH--HH--HHHHhhccCCCC
Q 010342 453 TPNIVCYNVVIDGACKLSMKREAYQILREMR-KNGLNPDAVT--WR--ILDKLHGNRGND 507 (512)
Q Consensus 453 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~-~~~~~p~~~~--~~--~l~~~~~~~g~~ 507 (512)
+...-....|...+...|+..++.+.+.-.. -..-.||..+ |. .+-++|...|++
T Consensus 482 rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlAkKi~Di~vqLws~si~~~L~~a~g~~ 541 (629)
T KOG2300|consen 482 RLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKKIPDIPVQLWSSSILTDLYQALGEK 541 (629)
T ss_pred HHHHHHHHHHHHHHHHhcchHHHHhccchHHHHHhcCCCchHHHHHHHHHHHHHHHhCcc
Confidence 1111223344455667888888887765543 2223456432 32 222555555553
No 308
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=89.62 E-value=23 Score=35.20 Aligned_cols=187 Identities=16% Similarity=0.061 Sum_probs=111.6
Q ss_pred HHHHHHHHHHh-CCCCCC--hHhHHHHHHHHH-hcCChhHHHHHHHHHHhCCCCCChh-----hHHHHHHHHHhcCChhh
Q 010342 12 EAHKLFFDMKS-RGHVPN--VVSYTTLIHGYC-RTGEMDVAYKVFDEMRHCGVLPNSL-----TYSVLVRGVLRTRDVER 82 (512)
Q Consensus 12 ~A~~~~~~~~~-~~~~~~--~~~~~~l~~~~~-~~~~~~~a~~~~~~m~~~~~~~~~~-----~~~~l~~~~~~~~~~~~ 82 (512)
-|++.++.+.+ ..++|. ..++..+...+. ...+++.|+..+++....--.++.. +...++..+.+.+...
T Consensus 39 ~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~- 117 (608)
T PF10345_consen 39 TAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA- 117 (608)
T ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-
Confidence 46777777773 333332 335667777776 6788999999999885543222222 2233456666666555
Q ss_pred HHHHHHHHHHHhhhcCCCCcchHhHHHH-HHHHHccCChhHHHHHHHhcCCCC---CCCcchhHHHHHHHHH--hcCChh
Q 010342 83 ANVLMFKLWERMKEEEDLSVNNAAFANL-VDSLCREGYVNEVFRIAEDMPQGK---SVNEEFACGHMIDSLC--RSGRNH 156 (512)
Q Consensus 83 a~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~--~~~~~~ 156 (512)
|...+.+.++..... +..+-...|.-+ +..+...+++..|.+.++.+.... ..|....+..++.+.. +.+..+
T Consensus 118 a~~~l~~~I~~~~~~-~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~ 196 (608)
T PF10345_consen 118 ALKNLDKAIEDSETY-GHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPD 196 (608)
T ss_pred HHHHHHHHHHHHhcc-CchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCch
Confidence 888888877766553 333334455554 444444489999999988865432 2344444444554443 456567
Q ss_pred hHHHHHHHHHHcCC---------CCCcchHHHHHHHHh--ccCchhHHHHHHHHH
Q 010342 157 GASRVVYVMRKRGL---------TPSLVSYNSIVHGLC--KHGGCMRAYQLLEEG 200 (512)
Q Consensus 157 ~a~~~~~~~~~~g~---------~p~~~~~~~l~~~~~--~~~~~~~a~~~~~~~ 200 (512)
++.+.+..+..... .|...+|..+++.++ ..|+++.+.+.++++
T Consensus 197 d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~l 251 (608)
T PF10345_consen 197 DVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQL 251 (608)
T ss_pred hHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 77777776643211 234557777777655 467766666665554
No 309
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=89.61 E-value=1.1 Score=23.65 Aligned_cols=28 Identities=11% Similarity=0.268 Sum_probs=18.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 010342 423 VYAAMIKGLCRSGKIHEAVHFLYELVDS 450 (512)
Q Consensus 423 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 450 (512)
.+..+...+...|++++|++.|++.++.
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 4556666777777777777777776654
No 310
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=89.33 E-value=5.5 Score=32.12 Aligned_cols=76 Identities=16% Similarity=0.141 Sum_probs=41.6
Q ss_pred hHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHHHhhhcCCCCcchHhHHHHHHHHHccCChhHHH
Q 010342 46 DVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVF 124 (512)
Q Consensus 46 ~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 124 (512)
+.|++.|-.+...+.--++.....+...| ...+.++++.++.+.++.... +-.+++..+.+|+..+.+.|+++.|.
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY-~krD~~Kt~~ll~~~L~l~~~--~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYY-TKRDPEKTIQLLLRALELSNP--DDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHH-HccCHHHHHHHHHHHHHhcCC--CCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 45666666666554333444443433333 355666666666666554332 22555566666666666666666553
No 311
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=89.01 E-value=47 Score=37.87 Aligned_cols=324 Identities=11% Similarity=0.008 Sum_probs=172.2
Q ss_pred HHHHHHHccCChhHHHHHHHhcCCCCC--CCcchhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHhc
Q 010342 109 NLVDSLCREGYVNEVFRIAEDMPQGKS--VNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCK 186 (512)
Q Consensus 109 ~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~ 186 (512)
.+..+-.+++.+.+|...+++-..... ......+..+...|..-+++|+...+...-.. +...+. -|-....
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a-----~~sl~~-qil~~e~ 1461 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA-----DPSLYQ-QILEHEA 1461 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc-----CccHHH-HHHHHHh
Confidence 455566788999999999998422111 11223445555699999999998887764221 223333 3444567
Q ss_pred cCchhHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChhhHHHH
Q 010342 187 HGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNV 266 (512)
Q Consensus 187 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 266 (512)
.|++..|...|+.+.+.+ ++...+++-++......|.++......+.............++.-..+.-+.++++.....
T Consensus 1462 ~g~~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se~~~~~~s~~~eaaW~l~qwD~~e~~ 1540 (2382)
T KOG0890|consen 1462 SGNWADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSEEVDELNSLGVEAAWRLSQWDLLESY 1540 (2382)
T ss_pred hccHHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhccCHHHHHHHHHHHHHHhhhcchhhhhhh
Confidence 899999999999999765 4557788888888888888888887666665443333344555556666777888777766
Q ss_pred HHHHHhcCCCCChhhHHHH--HHHHHhc--CCHHHHHHHHHHHhhCCC--------CCCcHHHHHHHHHHHhhcCCHHHH
Q 010342 267 LVFMLQTQCQPDVITLNTV--INGFCKM--GRIEEALKVLNDMVAGKF--------CAPDAVTFTTIIFGLLNVGRIQEA 334 (512)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~l--~~~~~~~--~~~~~a~~~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~a 334 (512)
+. .. +..+|... .....+. .+.-.-.+..+.+.+.-. ...-...|..++....-..-....
T Consensus 1541 l~---~~----n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~el~~~~ 1613 (2382)
T KOG0890|consen 1541 LS---DR----NIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLELENSI 1613 (2382)
T ss_pred hh---cc----cccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHHHHHHH
Confidence 55 11 22233322 2222222 111111122222221110 011123444444443322211111
Q ss_pred HHHHHhhcccCCCCCChhhHHHHHHHHHccCCHHHHHHHHH-HHHhC----CC-CCChHhHHHHHHHHHhcCCHHHHHHH
Q 010342 335 LNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFN-CMLGI----GV-VADSTTYAIVIDGLCESNQLDEAKRF 408 (512)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~-~~~~~----~~-~~~~~~~~~l~~~~~~~g~~~~a~~~ 408 (512)
.. +...-......-+..-|..-+..-....+..+-+--++ .+... +. .--..+|-...+...+.|.++.|...
T Consensus 1614 ~~-l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~na 1692 (2382)
T KOG0890|consen 1614 EE-LKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNA 1692 (2382)
T ss_pred HH-hhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHH
Confidence 11 11111111111111122222221111111111111111 11111 11 11234677777777888999999887
Q ss_pred HHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 010342 409 WDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDS 450 (512)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 450 (512)
+-.+.+.+ .| ..+--.+.-+...|+...|+.++++.++.
T Consensus 1693 ll~A~e~r-~~--~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~ 1731 (2382)
T KOG0890|consen 1693 LLNAKESR-LP--EIVLERAKLLWQTGDELNALSVLQEILSK 1731 (2382)
T ss_pred HHhhhhcc-cc--hHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 77776554 33 35556667778889999999999888754
No 312
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=88.77 E-value=3.8 Score=28.59 Aligned_cols=61 Identities=10% Similarity=0.162 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHH
Q 010342 11 GEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVR 72 (512)
Q Consensus 11 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~ 72 (512)
-+.++-++.+...+..|++....+.+.+|-|-+++..|.++|+-.+.+- .+....|..+++
T Consensus 27 we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~-~~~~~~Y~~~lq 87 (108)
T PF02284_consen 27 WELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKC-GNKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-TT-TTHHHHHHH
T ss_pred HHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-cChHHHHHHHHH
Confidence 3556666666667777788888888888888888888888888776531 222225655544
No 313
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=88.51 E-value=5.2 Score=27.64 Aligned_cols=63 Identities=10% Similarity=0.154 Sum_probs=46.9
Q ss_pred cHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHH
Q 010342 9 RVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVR 72 (512)
Q Consensus 9 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~ 72 (512)
+.-++++-++.+...+..|++....+.+++|-|-+++.-|.++|+-.+.+- ..+...|..+++
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~-~~~~~~y~~~lq 84 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKC-GAHKEIYPYILQ 84 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-cCchhhHHHHHH
Confidence 556777788888888888888888889999999999999999998777431 123445655544
No 314
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=88.50 E-value=5.2 Score=32.24 Aligned_cols=75 Identities=12% Similarity=0.047 Sum_probs=60.7
Q ss_pred cHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHhC---CCCCChhhHHHHHHHHHhcCChhhHH
Q 010342 9 RVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHC---GVLPNSLTYSVLVRGVLRTRDVERAN 84 (512)
Q Consensus 9 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~---~~~~~~~~~~~l~~~~~~~~~~~~a~ 84 (512)
.-+.|.+.|-.+...+.--++.....|...|. ..+.+++..++-+..+. +-.+|+..+.+|...+.+.++++.|.
T Consensus 121 ~d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 121 GDQEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred CcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 44678888888888776667777777777777 66889999999988763 33678999999999999999998873
No 315
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=88.31 E-value=1.5 Score=24.56 Aligned_cols=26 Identities=19% Similarity=0.321 Sum_probs=12.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010342 423 VYAAMIKGLCRSGKIHEAVHFLYELV 448 (512)
Q Consensus 423 ~~~~l~~~~~~~g~~~~a~~~~~~~~ 448 (512)
+++.|...|...|++++|..++++..
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 44445555555555555555554443
No 316
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=88.24 E-value=19 Score=32.31 Aligned_cols=118 Identities=5% Similarity=0.021 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHh---cCCHHHHHHHH
Q 010342 368 EEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCR---SGKIHEAVHFL 444 (512)
Q Consensus 368 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~a~~~~ 444 (512)
+.-+.++++.++.+ +.+......++..+.+..+.++..+-|+++.... +.+...|...+..... .-.++....+|
T Consensus 48 E~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~-~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y 125 (321)
T PF08424_consen 48 ERKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKN-PGSPELWREYLDFRQSNFASFTVSDVRDVY 125 (321)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHhccCcHHHHHHHH
Confidence 44555666665552 3445555666666666666666666677766543 3355566666654433 22345555555
Q ss_pred HHHHHC------CC----CCChh-------hHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 010342 445 YELVDS------GV----TPNIV-------CYNVVIDGACKLSMKREAYQILREMRKNGL 487 (512)
Q Consensus 445 ~~~~~~------~~----~p~~~-------~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 487 (512)
.+.++. +. .+... .+..+...+..+|..+.|..+++.+.+.++
T Consensus 126 ~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~ 185 (321)
T PF08424_consen 126 EKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNF 185 (321)
T ss_pred HHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHc
Confidence 443321 11 00011 122233334457777777777777776555
No 317
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.14 E-value=9 Score=36.47 Aligned_cols=99 Identities=14% Similarity=0.116 Sum_probs=52.5
Q ss_pred HhhcCCHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHH
Q 010342 325 LLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDE 404 (512)
Q Consensus 325 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 404 (512)
..+.|+.+.|.++..+ ..+..-|..|..+....+++..|.+.|..... |..|+-.+...|+-+.
T Consensus 647 al~lgrl~iA~~la~e-------~~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~ 710 (794)
T KOG0276|consen 647 ALKLGRLDIAFDLAVE-------ANSEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEG 710 (794)
T ss_pred hhhcCcHHHHHHHHHh-------hcchHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhH
Confidence 3455666666665544 12445566666666666666666666655443 3345555555565555
Q ss_pred HHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHH
Q 010342 405 AKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLY 445 (512)
Q Consensus 405 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 445 (512)
...+-....+.| ..| .-.-+|...|+++++.+++.
T Consensus 711 l~~la~~~~~~g-~~N-----~AF~~~~l~g~~~~C~~lLi 745 (794)
T KOG0276|consen 711 LAVLASLAKKQG-KNN-----LAFLAYFLSGDYEECLELLI 745 (794)
T ss_pred HHHHHHHHHhhc-ccc-----hHHHHHHHcCCHHHHHHHHH
Confidence 555544444444 222 22234445566666666553
No 318
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=88.12 E-value=32 Score=34.81 Aligned_cols=226 Identities=14% Similarity=0.019 Sum_probs=120.0
Q ss_pred ccCchhHHHHHHHHHHhCCCCCchh-------hHHHHHH-HHhccCCHHHHHHHHHHHHhCC----CCCCcccHHHHHHH
Q 010342 186 KHGGCMRAYQLLEEGIQFGYLPSEH-------TYKVLVE-GLCGESDLEKARKVLQFMLSKK----DVDRTRICNIYLRA 253 (512)
Q Consensus 186 ~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~~-~~~~~g~~~~a~~~~~~~~~~~----~~~~~~~~~~l~~~ 253 (512)
...++.+|..++.++...-..|+.. .++.+-. .....|+++.|.++-+.....- ..+....+..+..+
T Consensus 427 s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a 506 (894)
T COG2909 427 SQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEA 506 (894)
T ss_pred HccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHH
Confidence 4678888888888876543233221 2332222 2345788999998888776532 12223456666777
Q ss_pred HHccCChhhHHHHHHHHHhcCCCCChhhHHHHH-----HHHHhcCC--HHHHHHHHHHHhhC-----CCCCCcHHHHHHH
Q 010342 254 LCLIKNPTELLNVLVFMLQTQCQPDVITLNTVI-----NGFCKMGR--IEEALKVLNDMVAG-----KFCAPDAVTFTTI 321 (512)
Q Consensus 254 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~-----~~~~~~~~--~~~a~~~~~~~~~~-----~~~~~~~~~~~~l 321 (512)
..-.|++++|..+.....+..-..+...+.... ..+...|. .......|...... ....+-..++..+
T Consensus 507 ~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~l 586 (894)
T COG2909 507 AHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQL 586 (894)
T ss_pred HHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHH
Confidence 788899999998887766553333444333322 23445563 23333333333221 1112233455555
Q ss_pred HHHHhhcCC-HHHHHHHHHhhcccCCCCCChhhH--HHHHHHHHccCCHHHHHHHHHHHHhCCCCC----ChHhHHHHHH
Q 010342 322 IFGLLNVGR-IQEALNLLYQVMPQRGYSPGIVTY--NAVLRGLFRLRRVEEAKEVFNCMLGIGVVA----DSTTYAIVID 394 (512)
Q Consensus 322 ~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~~l~~ 394 (512)
..++.+... ..++..-+ +........|-...+ ..++......|+.++|...++++......+ +..+....+.
T Consensus 587 l~~~~r~~~~~~ear~~~-~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v~ 665 (894)
T COG2909 587 LRAWLRLDLAEAEARLGI-EVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKVK 665 (894)
T ss_pred HHHHHHHhhhhHHhhhcc-hhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHhh
Confidence 556555221 12222222 111112112222222 366778888999999999999988743333 2222222222
Q ss_pred --HHHhcCCHHHHHHHHHHh
Q 010342 395 --GLCESNQLDEAKRFWDDI 412 (512)
Q Consensus 395 --~~~~~g~~~~a~~~~~~~ 412 (512)
.....|+.+.+.....+-
T Consensus 666 ~~lwl~qg~~~~a~~~l~~s 685 (894)
T COG2909 666 LILWLAQGDKELAAEWLLKS 685 (894)
T ss_pred HHHhcccCCHHHHHHHHHhc
Confidence 234567777777666653
No 319
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=87.87 E-value=0.91 Score=39.32 Aligned_cols=89 Identities=10% Similarity=-0.074 Sum_probs=60.6
Q ss_pred ccccccCcHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChh
Q 010342 2 DQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVE 81 (512)
Q Consensus 2 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~ 81 (512)
+-|+++|++++|++.|.+-+...+. |++++..-..+|.+...+..|..-.+.....+ ..=...|+.-+.+-...|...
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia~~P~-NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~~Lg~~~ 182 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIAVYPH-NPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARESLGNNM 182 (536)
T ss_pred hhhhhccchhHHHHHhhhhhccCCC-CccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHHHHhhHH
Confidence 3578999999999999988776322 78888888888998888887776666555421 011224555555555666777
Q ss_pred hHHHHHHHHHH
Q 010342 82 RANVLMFKLWE 92 (512)
Q Consensus 82 ~a~~~~~~~~~ 92 (512)
+|..-++.+++
T Consensus 183 EAKkD~E~vL~ 193 (536)
T KOG4648|consen 183 EAKKDCETVLA 193 (536)
T ss_pred HHHHhHHHHHh
Confidence 77666655554
No 320
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=87.83 E-value=1.5 Score=24.60 Aligned_cols=28 Identities=18% Similarity=0.356 Sum_probs=17.3
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 010342 30 VSYTTLIHGYCRTGEMDVAYKVFDEMRH 57 (512)
Q Consensus 30 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 57 (512)
.+++.|...|...|++++|+.++++...
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 3566666666666777777666666543
No 321
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=87.45 E-value=25 Score=32.96 Aligned_cols=166 Identities=10% Similarity=0.034 Sum_probs=66.8
Q ss_pred chhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChhhHHHHHHHHHhcCCCCChhhHHHHHH
Q 010342 208 SEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVIN 287 (512)
Q Consensus 208 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 287 (512)
|.....+++..+.....+.-.+.+..++..-+ .+.-.+..++++|... ..+....+++++.+..+. |+..-..|..
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~ 140 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELAD 140 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHH
Confidence 33344444444444444444444444444321 1222344444444444 334444444444444332 2222233333
Q ss_pred HHHhcCCHHHHHHHHHHHhhCCCCCC----cHHHHHHHHHHHhhcCCHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHc
Q 010342 288 GFCKMGRIEEALKVLNDMVAGKFCAP----DAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR 363 (512)
Q Consensus 288 ~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 363 (512)
.|.+ ++.+.+...|.++..+-..+. -...|..+.... ..+.+..+.+..+.-...|...-...+.-+-..|..
T Consensus 141 ~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~ 217 (711)
T COG1747 141 KYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSE 217 (711)
T ss_pred HHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcc
Confidence 3333 455555555544443221000 011222222111 233344444444433333333334444444455555
Q ss_pred cCCHHHHHHHHHHHHhC
Q 010342 364 LRRVEEAKEVFNCMLGI 380 (512)
Q Consensus 364 ~~~~~~a~~~~~~~~~~ 380 (512)
..++++|++++..+.+.
T Consensus 218 ~eN~~eai~Ilk~il~~ 234 (711)
T COG1747 218 NENWTEAIRILKHILEH 234 (711)
T ss_pred ccCHHHHHHHHHHHhhh
Confidence 55566666665555443
No 322
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=87.30 E-value=6.1 Score=33.56 Aligned_cols=88 Identities=14% Similarity=0.174 Sum_probs=56.1
Q ss_pred HHHHHhccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHh---
Q 010342 215 LVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCK--- 291 (512)
Q Consensus 215 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--- 291 (512)
=|.+++..++|.++..+.-+.-+.....++.+...-|-.|.+.+.+..+.++-...+...-.-+...|.+++..|..
T Consensus 89 GIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VL 168 (309)
T PF07163_consen 89 GIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVL 168 (309)
T ss_pred hHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHH
Confidence 35666677777777666655554444455566666677777777777777776666654333344446666555543
Q ss_pred --cCCHHHHHHHH
Q 010342 292 --MGRIEEALKVL 302 (512)
Q Consensus 292 --~~~~~~a~~~~ 302 (512)
.|.+++|+++.
T Consensus 169 lPLG~~~eAeelv 181 (309)
T PF07163_consen 169 LPLGHFSEAEELV 181 (309)
T ss_pred hccccHHHHHHHH
Confidence 58888888877
No 323
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.19 E-value=11 Score=32.69 Aligned_cols=105 Identities=19% Similarity=0.246 Sum_probs=69.6
Q ss_pred CCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC--cccHHHHHHHHHccCChhhHHHHHHHHHhcCCCCChhh
Q 010342 204 GYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR--TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVIT 281 (512)
Q Consensus 204 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 281 (512)
|.+....+...++..-....+++.+...+-++........ ..+....++. +-.-++++++.++..-++.|+-||-.+
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irl-llky~pq~~i~~l~npIqYGiF~dqf~ 137 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRL-LLKYDPQKAIYTLVNPIQYGIFPDQFT 137 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHH-HHccChHHHHHHHhCcchhccccchhh
Confidence 4444555555555555556677777777766653321111 1122222333 334466788888888888899999999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 010342 282 LNTVINGFCKMGRIEEALKVLNDMVAGK 309 (512)
Q Consensus 282 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 309 (512)
+..+|+.+.+.+++.+|.++...|....
T Consensus 138 ~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 138 FCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 9999999999999999988887776544
No 324
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=87.10 E-value=1.2 Score=23.64 Aligned_cols=25 Identities=16% Similarity=0.018 Sum_probs=11.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 010342 459 YNVVIDGACKLSMKREAYQILREMR 483 (512)
Q Consensus 459 ~~~l~~~~~~~g~~~~a~~~~~~m~ 483 (512)
|..+...+...|++++|.+.|++..
T Consensus 4 ~~~lg~~y~~~~~~~~A~~~~~~a~ 28 (34)
T PF13181_consen 4 YYNLGKIYEQLGDYEEALEYFEKAL 28 (34)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3344444444455555555444444
No 325
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=87.00 E-value=2.8 Score=30.43 Aligned_cols=43 Identities=14% Similarity=0.132 Sum_probs=21.1
Q ss_pred HHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010342 406 KRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELV 448 (512)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 448 (512)
.+-+..+..-++.|+..+...-+++|.+.+|+..|.++|+-+.
T Consensus 69 rkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK 111 (149)
T KOG4077|consen 69 RKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIK 111 (149)
T ss_pred HHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 3334444444445555555555555555555555555554443
No 326
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=86.76 E-value=45 Score=35.07 Aligned_cols=53 Identities=15% Similarity=0.056 Sum_probs=26.4
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhCCCCCChH--hHHHHHHHHHhcCCHHHHHHHHHHh
Q 010342 357 VLRGLFRLRRVEEAKEVFNCMLGIGVVADST--TYAIVIDGLCESNQLDEAKRFWDDI 412 (512)
Q Consensus 357 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~a~~~~~~~ 412 (512)
.+.+|..+|++.+|..+..++... -+.. +-..|+.-+...+++-+|-++..+.
T Consensus 971 Al~a~~~~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~L~e~~kh~eAa~il~e~ 1025 (1265)
T KOG1920|consen 971 ALKAYKECGDWREALSLAAQLSEG---KDELVILAEELVSRLVEQRKHYEAAKILLEY 1025 (1265)
T ss_pred HHHHHHHhccHHHHHHHHHhhcCC---HHHHHHHHHHHHHHHHHcccchhHHHHHHHH
Confidence 445555566666666665554321 1111 1234455555555555555555554
No 327
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=86.65 E-value=12 Score=28.48 Aligned_cols=53 Identities=17% Similarity=0.169 Sum_probs=28.8
Q ss_pred hhcCCHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 010342 326 LNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGI 380 (512)
Q Consensus 326 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 380 (512)
...++.+++..++..+---..-.+...++...+ +...|++++|..+|+++.+.
T Consensus 21 L~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l--~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 21 LRSADPYDAQAMLDALRVLRPNLKELDMFDGWL--LIARGNYDEAARILRELLSS 73 (153)
T ss_pred HhcCCHHHHHHHHHHHHHhCCCccccchhHHHH--HHHcCCHHHHHHHHHhhhcc
Confidence 346666666666655322222223334444333 45667777777777777664
No 328
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=86.49 E-value=7 Score=31.38 Aligned_cols=87 Identities=13% Similarity=0.059 Sum_probs=54.0
Q ss_pred ccccCcHHHHHHHHHHHHhCCCCCChH------hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC-ChhhHHHHHHHHHh
Q 010342 4 LCGLSRVGEAHKLFFDMKSRGHVPNVV------SYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLP-NSLTYSVLVRGVLR 76 (512)
Q Consensus 4 ~~~~g~~~~A~~~~~~~~~~~~~~~~~------~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~-~~~~~~~l~~~~~~ 76 (512)
+++.|++++|..-|.+.++. .|... .|..-..++.+.+.++.|+.--.+..+.+ | ....+..-..+|.+
T Consensus 105 ~F~ngdyeeA~skY~~Ale~--cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~--pty~kAl~RRAeayek 180 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALES--CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN--PTYEKALERRAEAYEK 180 (271)
T ss_pred hhhcccHHHHHHHHHHHHHh--CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC--chhHHHHHHHHHHHHh
Confidence 56778888888888887776 33222 35555566777888888877777777643 2 11222222345666
Q ss_pred cCChhhHHHHHHHHHHHh
Q 010342 77 TRDVERANVLMFKLWERM 94 (512)
Q Consensus 77 ~~~~~~a~~~~~~~~~~~ 94 (512)
...++.|+.-|.++++..
T Consensus 181 ~ek~eealeDyKki~E~d 198 (271)
T KOG4234|consen 181 MEKYEEALEDYKKILESD 198 (271)
T ss_pred hhhHHHHHHHHHHHHHhC
Confidence 667777777666665543
No 329
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=86.27 E-value=15 Score=29.11 Aligned_cols=26 Identities=27% Similarity=0.420 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 010342 439 EAVHFLYELVDSGVTPNIVCYNVVIDGA 466 (512)
Q Consensus 439 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 466 (512)
+|.+.|++..+. .|+..+|+.-+...
T Consensus 98 kA~~~FqkAv~~--~P~ne~Y~ksLe~~ 123 (186)
T PF06552_consen 98 KATEYFQKAVDE--DPNNELYRKSLEMA 123 (186)
T ss_dssp HHHHHHHHHHHH---TT-HHHHHHHHHH
T ss_pred HHHHHHHHHHhc--CCCcHHHHHHHHHH
Confidence 333334433332 45555555444443
No 330
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=85.72 E-value=13 Score=27.79 Aligned_cols=73 Identities=14% Similarity=0.185 Sum_probs=44.8
Q ss_pred CCCHHhHHHHHHHHHhcCC---HHHHHHHHHHHHH-CCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChH
Q 010342 418 IHDNYVYAAMIKGLCRSGK---IHEAVHFLYELVD-SGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAV 492 (512)
Q Consensus 418 ~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~-~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~ 492 (512)
.++..+--.+.+++.+..+ ..+.+.+++.+.+ ....-.......|.-++.+.++++++.++++.+.+ ..||..
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~--~e~~n~ 105 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLE--TEPNNR 105 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHh--hCCCcH
Confidence 3444555556677766543 4456677777765 22222334555666777788888888888887776 455543
No 331
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=85.57 E-value=74 Score=36.49 Aligned_cols=326 Identities=11% Similarity=-0.016 Sum_probs=161.3
Q ss_pred HHHHHhcCChhhHHHHHHHHHHHhhhcCCCCcchHhHHHHHHHHHccCChhHHHHHHHhcCCCCCCCcchhHHHHHHHHH
Q 010342 71 VRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLC 150 (512)
Q Consensus 71 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 150 (512)
..+-.+.+.+.+|...+++-.. ..........-|..+...|..-+++|...-+...-.. +. ....-|....
T Consensus 1390 a~aSfrc~~y~RalmylEs~~~---~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a-----~~-sl~~qil~~e 1460 (2382)
T KOG0890|consen 1390 ARASFRCKAYARALMYLESHRS---TEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA-----DP-SLYQQILEHE 1460 (2382)
T ss_pred HHHHHhhHHHHHHHHHHHHhcc---ccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc-----Cc-cHHHHHHHHH
Confidence 3455566777777665544310 0111122223344455589999998887777663111 11 2223556677
Q ss_pred hcCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHhccCchhHHHHHHHHHHhCCCCCchhhHHH-HHHHHhccCCHHHHH
Q 010342 151 RSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKV-LVEGLCGESDLEKAR 229 (512)
Q Consensus 151 ~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~a~ 229 (512)
..|++..|...|+.+.+.+.. ....++.++......|.++......+-.... ..+....++. =+.+.-+.++++...
T Consensus 1461 ~~g~~~da~~Cye~~~q~~p~-~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~qwD~~e 1538 (2382)
T KOG0890|consen 1461 ASGNWADAAACYERLIQKDPD-KEKHHSGVLKSMLAIQHLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQWDLLE 1538 (2382)
T ss_pred hhccHHHHHHHHHHhhcCCCc-cccchhhHHHhhhcccchhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcchhhhh
Confidence 889999999999999987432 4667887777777777777777655544432 1233333332 233445677777766
Q ss_pred HHHHHHHhCCCCCCcccHHHHHHHHHccCChh--hHHHHHHHHHhcCCCC---------ChhhHHHHHHHHHhcCCHHHH
Q 010342 230 KVLQFMLSKKDVDRTRICNIYLRALCLIKNPT--ELLNVLVFMLQTQCQP---------DVITLNTVINGFCKMGRIEEA 298 (512)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~a~~~~~~~~~~~~~~---------~~~~~~~l~~~~~~~~~~~~a 298 (512)
..+. ..+..... ...+.....+...-+ .-.+.++.+.+.-+.| -...|..++....-. +.+.-
T Consensus 1539 ~~l~---~~n~e~w~--~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~-el~~~ 1612 (2382)
T KOG0890|consen 1539 SYLS---DRNIEYWS--VESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLL-ELENS 1612 (2382)
T ss_pred hhhh---cccccchh--HHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHH-HHHHH
Confidence 6654 11111111 111233333222221 1112333333221111 012333333332221 11111
Q ss_pred HHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhhcccC----CC-CCChhhHHHHHHHHHccCCHHHHHHH
Q 010342 299 LKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQR----GY-SPGIVTYNAVLRGLFRLRRVEEAKEV 373 (512)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~ 373 (512)
.+.+...........+..-|..-+..-....+..+-+-.+++.+-.. +. .--..+|....+..-+.|+++.|...
T Consensus 1613 ~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~na 1692 (2382)
T KOG0890|consen 1613 IEELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNA 1692 (2382)
T ss_pred HHHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHH
Confidence 11111111111001111122222222111112222222222222111 11 12245677778877789999999888
Q ss_pred HHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCC
Q 010342 374 FNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPS 416 (512)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 416 (512)
+-...+.+ . +..+--........|+...|..++++.+...
T Consensus 1693 ll~A~e~r-~--~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1693 LLNAKESR-L--PEIVLERAKLLWQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred HHhhhhcc-c--chHHHHHHHHHHhhccHHHHHHHHHHHHHhh
Confidence 77776655 2 3445556677888999999999999887443
No 332
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.51 E-value=20 Score=29.81 Aligned_cols=25 Identities=8% Similarity=0.038 Sum_probs=16.2
Q ss_pred HHHHHhccCCHHHHHHHHHHHHhCC
Q 010342 215 LVEGLCGESDLEKARKVLQFMLSKK 239 (512)
Q Consensus 215 l~~~~~~~g~~~~a~~~~~~~~~~~ 239 (512)
+....+..+++.+|.++|+++....
T Consensus 160 vA~yaa~leqY~~Ai~iyeqva~~s 184 (288)
T KOG1586|consen 160 VAQYAAQLEQYSKAIDIYEQVARSS 184 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344455677788888888776543
No 333
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=85.14 E-value=1.6 Score=22.74 Aligned_cols=21 Identities=19% Similarity=0.485 Sum_probs=8.7
Q ss_pred HHHHhcCCHHHHHHHHHHHHH
Q 010342 429 KGLCRSGKIHEAVHFLYELVD 449 (512)
Q Consensus 429 ~~~~~~g~~~~a~~~~~~~~~ 449 (512)
.++.+.|++++|.+.|+++++
T Consensus 8 ~~~~~~g~~~~A~~~~~~~~~ 28 (33)
T PF13174_consen 8 RCYYKLGDYDEAIEYFQRLIK 28 (33)
T ss_dssp HHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHH
Confidence 333334444444444444433
No 334
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=84.82 E-value=3.3 Score=21.78 Aligned_cols=28 Identities=18% Similarity=0.247 Sum_probs=21.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 010342 423 VYAAMIKGLCRSGKIHEAVHFLYELVDS 450 (512)
Q Consensus 423 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 450 (512)
+|..+...|...|++++|.+.|++.++.
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~ 30 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 5666777788888888888888777653
No 335
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=84.81 E-value=1.6 Score=22.82 Aligned_cols=25 Identities=24% Similarity=0.416 Sum_probs=14.3
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhC
Q 010342 34 TLIHGYCRTGEMDVAYKVFDEMRHC 58 (512)
Q Consensus 34 ~l~~~~~~~~~~~~a~~~~~~m~~~ 58 (512)
.+..++.+.|++++|.+.|+++.+.
T Consensus 5 ~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 5 RLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3445555566666666666665553
No 336
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=84.75 E-value=1.8 Score=21.39 Aligned_cols=22 Identities=18% Similarity=0.233 Sum_probs=14.5
Q ss_pred HHHHHHHHHhcCChhHHHHHHH
Q 010342 32 YTTLIHGYCRTGEMDVAYKVFD 53 (512)
Q Consensus 32 ~~~l~~~~~~~~~~~~a~~~~~ 53 (512)
...+...+...|++++|+.+++
T Consensus 4 ~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 4 RLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHcCCHHHHHHHHh
Confidence 4456666777777777776664
No 337
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=84.48 E-value=20 Score=28.89 Aligned_cols=93 Identities=8% Similarity=0.035 Sum_probs=46.2
Q ss_pred HHHHHHccCChhHHHHHHHhcCCCCCCC--cchhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHhcc
Q 010342 110 LVDSLCREGYVNEVFRIAEDMPQGKSVN--EEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKH 187 (512)
Q Consensus 110 l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~ 187 (512)
+...+...|++++|..-++......... ...+--.|.+.....|.+|+|+.+++.....+.. ......-.+.+...
T Consensus 95 lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~--~~~~elrGDill~k 172 (207)
T COG2976 95 LAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWA--AIVAELRGDILLAK 172 (207)
T ss_pred HHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHH--HHHHHHhhhHHHHc
Confidence 3445555566666665555443221100 0111112344555566666666666665554321 12233344556666
Q ss_pred CchhHHHHHHHHHHhCC
Q 010342 188 GGCMRAYQLLEEGIQFG 204 (512)
Q Consensus 188 ~~~~~a~~~~~~~~~~~ 204 (512)
|+-++|..-|++..+..
T Consensus 173 g~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 173 GDKQEARAAYEKALESD 189 (207)
T ss_pred CchHHHHHHHHHHHHcc
Confidence 66666666666666553
No 338
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=84.36 E-value=5.6 Score=34.77 Aligned_cols=92 Identities=10% Similarity=0.003 Sum_probs=55.4
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCC
Q 010342 357 VLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGK 436 (512)
Q Consensus 357 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 436 (512)
-...|.+.|.+++|+..|....... +-|+.++..-..+|.+...+..|+.-...++..+ ..-...|..-+.+-...|.
T Consensus 103 ~GN~yFKQgKy~EAIDCYs~~ia~~-P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~~Lg~ 180 (536)
T KOG4648|consen 103 RGNTYFKQGKYEEAIDCYSTAIAVY-PHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARESLGN 180 (536)
T ss_pred hhhhhhhccchhHHHHHhhhhhccC-CCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHHHHhh
Confidence 3556778888888888887766642 3377777777778888888877777666665432 1112233333333333455
Q ss_pred HHHHHHHHHHHHHC
Q 010342 437 IHEAVHFLYELVDS 450 (512)
Q Consensus 437 ~~~a~~~~~~~~~~ 450 (512)
..+|.+-++..++.
T Consensus 181 ~~EAKkD~E~vL~L 194 (536)
T KOG4648|consen 181 NMEAKKDCETVLAL 194 (536)
T ss_pred HHHHHHhHHHHHhh
Confidence 55555555555543
No 339
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=84.31 E-value=2.7 Score=24.19 Aligned_cols=23 Identities=17% Similarity=0.406 Sum_probs=10.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Q 010342 427 MIKGLCRSGKIHEAVHFLYELVD 449 (512)
Q Consensus 427 l~~~~~~~g~~~~a~~~~~~~~~ 449 (512)
|..+|...|+.+.|.++++++..
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHH
Confidence 34444444454555444444443
No 340
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=84.27 E-value=8.2 Score=33.03 Aligned_cols=72 Identities=13% Similarity=0.086 Sum_probs=49.3
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHHHhhhcCCCCcch
Q 010342 32 YTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNN 104 (512)
Q Consensus 32 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 104 (512)
++.....|..+|.+.+|.++.++....+ +.+...+..++..+...||--.+...++++-+.+...-++..+.
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vdd 353 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDD 353 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcch
Confidence 3455566777888888888888777654 44666777778888888887777776666666555554555443
No 341
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=83.73 E-value=10 Score=29.93 Aligned_cols=28 Identities=11% Similarity=0.143 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHCCCCCChHHHHHHHHhh
Q 010342 472 KREAYQILREMRKNGLNPDAVTWRILDKLH 501 (512)
Q Consensus 472 ~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~ 501 (512)
+++|.+.|++..+ ..|+...|+.-+.+.
T Consensus 96 F~kA~~~FqkAv~--~~P~ne~Y~ksLe~~ 123 (186)
T PF06552_consen 96 FEKATEYFQKAVD--EDPNNELYRKSLEMA 123 (186)
T ss_dssp HHHHHHHHHHHHH--H-TT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHh--cCCCcHHHHHHHHHH
Confidence 4555566666655 578888887665544
No 342
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=83.66 E-value=19 Score=29.09 Aligned_cols=87 Identities=16% Similarity=0.095 Sum_probs=40.1
Q ss_pred HccCCHHHHHHHHHHHHhCCCCCChH-----hHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCC
Q 010342 362 FRLRRVEEAKEVFNCMLGIGVVADST-----TYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGK 436 (512)
Q Consensus 362 ~~~~~~~~a~~~~~~~~~~~~~~~~~-----~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 436 (512)
++.|++++|..-|...+..- ++... .|..-..++.+.+.++.|+.-..+.++.+ +.....+..-..+|.+...
T Consensus 106 F~ngdyeeA~skY~~Ale~c-p~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~-pty~kAl~RRAeayek~ek 183 (271)
T KOG4234|consen 106 FKNGDYEEANSKYQEALESC-PSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN-PTYEKALERRAEAYEKMEK 183 (271)
T ss_pred hhcccHHHHHHHHHHHHHhC-ccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC-chhHHHHHHHHHHHHhhhh
Confidence 44555555555555555431 22111 22222334455555555555555554433 2122222223345555556
Q ss_pred HHHHHHHHHHHHHC
Q 010342 437 IHEAVHFLYELVDS 450 (512)
Q Consensus 437 ~~~a~~~~~~~~~~ 450 (512)
+++|++-|+++.+.
T Consensus 184 ~eealeDyKki~E~ 197 (271)
T KOG4234|consen 184 YEEALEDYKKILES 197 (271)
T ss_pred HHHHHHHHHHHHHh
Confidence 66666666666554
No 343
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=83.64 E-value=28 Score=30.04 Aligned_cols=59 Identities=20% Similarity=0.137 Sum_probs=40.4
Q ss_pred HHHHHHHHhccCchhHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHH
Q 010342 177 YNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFML 236 (512)
Q Consensus 177 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 236 (512)
++...+.|..+|.+.+|.++.+..+... +.+...+..++..++..||--.+.+-++.+.
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 3445566777777777777777777654 5566777777777777777666666665553
No 344
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=83.52 E-value=23 Score=29.02 Aligned_cols=28 Identities=21% Similarity=0.173 Sum_probs=18.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 010342 423 VYAAMIKGLCRSGKIHEAVHFLYELVDS 450 (512)
Q Consensus 423 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 450 (512)
+|--|..-+...|+.++|..+|+-.+..
T Consensus 239 tyFYL~K~~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 239 TYFYLGKYYLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 5556666666777777777777666554
No 345
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=83.16 E-value=6.5 Score=23.78 Aligned_cols=35 Identities=20% Similarity=0.209 Sum_probs=18.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHH
Q 010342 461 VVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497 (512)
Q Consensus 461 ~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l 497 (512)
.+.-++.+.|++++|.+..+.+++ +.|+..-...|
T Consensus 6 ~lAig~ykl~~Y~~A~~~~~~lL~--~eP~N~Qa~~L 40 (53)
T PF14853_consen 6 YLAIGHYKLGEYEKARRYCDALLE--IEPDNRQAQSL 40 (53)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHH--HTTS-HHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHh--hCCCcHHHHHH
Confidence 344555666666666666666665 45554443333
No 346
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=82.57 E-value=14 Score=30.31 Aligned_cols=77 Identities=22% Similarity=0.148 Sum_probs=55.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCChhhHHHHHHH
Q 010342 388 TYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSG--VTPNIVCYNVVIDG 465 (512)
Q Consensus 388 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~p~~~~~~~l~~~ 465 (512)
|.+.-++.+.+.+.+.+++...+.-++.+ +.|...-..++..++-.|++++|..-++-.-... ..+...+|..++++
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 44556677788889999999988887764 5566677788899999999999988777665432 23334556666554
No 347
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=82.38 E-value=13 Score=30.40 Aligned_cols=78 Identities=10% Similarity=0.014 Sum_probs=49.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHHHhhhcCCCCcchHhHHHHH
Q 010342 32 YTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLV 111 (512)
Q Consensus 32 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 111 (512)
.+..++.+.+.++..+++...+.-.+.. +.|..+-..+++.++-.|++++|...++-+-+.. ....+....|..++
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~---p~~t~~a~lyr~li 79 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLS---PQDTVGASLYRHLI 79 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcC---cccchHHHHHHHHH
Confidence 4556667777888888888877766652 3355666777888888888888877654443221 13344445555555
Q ss_pred HH
Q 010342 112 DS 113 (512)
Q Consensus 112 ~~ 113 (512)
..
T Consensus 80 r~ 81 (273)
T COG4455 80 RC 81 (273)
T ss_pred HH
Confidence 43
No 348
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=82.04 E-value=31 Score=29.34 Aligned_cols=188 Identities=11% Similarity=0.115 Sum_probs=92.5
Q ss_pred ccCcHHHHHHHHHHHHhCCCCCChH---hHHHHHHHHHhcCChhHHHHHHHHHHhC---CC--CCChhhHHHHHHHHHhc
Q 010342 6 GLSRVGEAHKLFFDMKSRGHVPNVV---SYTTLIHGYCRTGEMDVAYKVFDEMRHC---GV--LPNSLTYSVLVRGVLRT 77 (512)
Q Consensus 6 ~~g~~~~A~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~m~~~---~~--~~~~~~~~~l~~~~~~~ 77 (512)
+..++++|+..|+...+........ +...++....+.+++++....+.+|... .+ ..+..+.+.++......
T Consensus 39 ~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS 118 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTS 118 (440)
T ss_pred cccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhh
Confidence 3456777777777777653222222 3345566677777777777766666431 11 11223444454444444
Q ss_pred CChhhHHHHHHHHHHHhhhcCCCCcchHhHHHHHHHHHccCChhHHHHHHHhcCCCCCCCcchhHHHHHHHHHhcCChhh
Q 010342 78 RDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHG 157 (512)
Q Consensus 78 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 157 (512)
.+.+-....++.-++.+.+..+-+.-..|-.-|. ..|...+++..
T Consensus 119 ~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLg-----------------------------------kl~fd~~e~~k 163 (440)
T KOG1464|consen 119 KNMDLLQEFYETTLDALKDAKNERLWFKTNTKLG-----------------------------------KLYFDRGEYTK 163 (440)
T ss_pred hhhHHHHHHHHHHHHHHHhhhcceeeeeccchHh-----------------------------------hhheeHHHHHH
Confidence 4444443333333333332222111111222233 44444444444
Q ss_pred HHHHHHHHHHc------------CCCCCcchHHHHHHHHhccCchhHHHHHHHHHHhC-CCCCchhhHHHHHHHH-----
Q 010342 158 ASRVVYVMRKR------------GLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQF-GYLPSEHTYKVLVEGL----- 219 (512)
Q Consensus 158 a~~~~~~~~~~------------g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~----- 219 (512)
..++++++.++ |.+ =...|..=|..|....+-.+...+|++.... ...|.+.... +|+-|
T Consensus 164 l~KIlkqLh~SCq~edGedD~kKGtQ-LLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImG-vIRECGGKMH 241 (440)
T KOG1464|consen 164 LQKILKQLHQSCQTEDGEDDQKKGTQ-LLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMG-VIRECGGKMH 241 (440)
T ss_pred HHHHHHHHHHHhccccCchhhhccch-hhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHh-HHHHcCCccc
Confidence 44444444321 111 2345666677777777777777777776543 2234444433 34433
Q ss_pred hccCCHHHHHH
Q 010342 220 CGESDLEKARK 230 (512)
Q Consensus 220 ~~~g~~~~a~~ 230 (512)
.+.|.+++|..
T Consensus 242 lreg~fe~AhT 252 (440)
T KOG1464|consen 242 LREGEFEKAHT 252 (440)
T ss_pred cccchHHHHHh
Confidence 45677777653
No 349
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.68 E-value=68 Score=33.08 Aligned_cols=56 Identities=14% Similarity=0.051 Sum_probs=31.7
Q ss_pred cccccCcHHHHHHHHHHHHhCCCCCChH-hHHHHHH---HHHhcCChhHHHHHHHHHHhC
Q 010342 3 QLCGLSRVGEAHKLFFDMKSRGHVPNVV-SYTTLIH---GYCRTGEMDVAYKVFDEMRHC 58 (512)
Q Consensus 3 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~---~~~~~~~~~~a~~~~~~m~~~ 58 (512)
.+....++++|..+-+.....++.-... .+..... -+..++++++|.+.|+++...
T Consensus 316 ~lL~~k~fe~ai~L~e~~~~~~p~~~~~i~~~~~l~~a~~lf~q~~f~ea~~~F~~~~~d 375 (877)
T KOG2063|consen 316 DLLQEKSFEEAISLAEILDSPNPKEKRQISCIKILIDAFELFLQKQFEEAMSLFEKSEID 375 (877)
T ss_pred HHHHhhhHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhccC
Confidence 3455566777776666544421111111 1122222 245688999999999998763
No 350
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=81.61 E-value=7.7 Score=22.85 Aligned_cols=34 Identities=12% Similarity=0.162 Sum_probs=22.6
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHH
Q 010342 466 ACKLSMKREAYQILREMRKNGLNPDAVTWRILDK 499 (512)
Q Consensus 466 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~ 499 (512)
..+.|-..++..++++|.+.|+..+...+..+++
T Consensus 12 Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 12 AKRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 3445666677777777777777777766666654
No 351
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=81.28 E-value=4.3 Score=23.35 Aligned_cols=26 Identities=15% Similarity=0.193 Sum_probs=23.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCC
Q 010342 461 VVIDGACKLSMKREAYQILREMRKNG 486 (512)
Q Consensus 461 ~l~~~~~~~g~~~~a~~~~~~m~~~~ 486 (512)
.+..+|...|+.+.|.+++++....|
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 47889999999999999999999755
No 352
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=81.14 E-value=29 Score=28.50 Aligned_cols=179 Identities=15% Similarity=0.040 Sum_probs=91.6
Q ss_pred cCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhhcccCCCCCC-hhhHHHHHHHHHccCCHHHH
Q 010342 292 MGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPG-IVTYNAVLRGLFRLRRVEEA 370 (512)
Q Consensus 292 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a 370 (512)
.|-+.-|.--|.+..... +.-+..||-+.-.+...|+++.|.+.|+..++-. |+ ..+...-.-++.--|++.-|
T Consensus 78 lGL~~LAR~DftQaLai~--P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELD---p~y~Ya~lNRgi~~YY~gR~~LA 152 (297)
T COG4785 78 LGLRALARNDFSQALAIR--PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD---PTYNYAHLNRGIALYYGGRYKLA 152 (297)
T ss_pred hhHHHHHhhhhhhhhhcC--CCcHHHHHHHHHHHHhcccchHHHHHhhhHhccC---CcchHHHhccceeeeecCchHhh
Confidence 344555555555555443 4455667777777778888888888887755322 21 11111111122345677777
Q ss_pred HHHHHHHHhCCCCCChH--hHHHHHHHHHhcCCHHHHHHH-HHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 010342 371 KEVFNCMLGIGVVADST--TYAIVIDGLCESNQLDEAKRF-WDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYEL 447 (512)
Q Consensus 371 ~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~a~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 447 (512)
.+-+...-..+ +.|+. .|-.+. ...-++.+|..- .++.. ..|..-|...+-.+. .|++. ...+++++
T Consensus 153 q~d~~~fYQ~D-~~DPfR~LWLYl~---E~k~dP~~A~tnL~qR~~----~~d~e~WG~~iV~~y-LgkiS-~e~l~~~~ 222 (297)
T COG4785 153 QDDLLAFYQDD-PNDPFRSLWLYLN---EQKLDPKQAKTNLKQRAE----KSDKEQWGWNIVEFY-LGKIS-EETLMERL 222 (297)
T ss_pred HHHHHHHHhcC-CCChHHHHHHHHH---HhhCCHHHHHHHHHHHHH----hccHhhhhHHHHHHH-Hhhcc-HHHHHHHH
Confidence 66665555433 22222 222222 122344454433 33332 234344544433332 12221 11223333
Q ss_pred HHCCCCC-------ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 010342 448 VDSGVTP-------NIVCYNVVIDGACKLSMKREAYQILREMRKNG 486 (512)
Q Consensus 448 ~~~~~~p-------~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 486 (512)
... -.. -..||-.|..-+...|+.++|..+|+-...++
T Consensus 223 ~a~-a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiann 267 (297)
T COG4785 223 KAD-ATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANN 267 (297)
T ss_pred Hhh-ccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence 221 111 12467778888899999999999999887654
No 353
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=80.63 E-value=50 Score=30.92 Aligned_cols=108 Identities=13% Similarity=0.002 Sum_probs=62.5
Q ss_pred HHhhcCCHHHHHHHHHhhc--ccCCCCCC-----hhhHHHHHHHHHccCCHHHHHHHHHHHHh-------CCCCCCh---
Q 010342 324 GLLNVGRIQEALNLLYQVM--PQRGYSPG-----IVTYNAVLRGLFRLRRVEEAKEVFNCMLG-------IGVVADS--- 386 (512)
Q Consensus 324 ~~~~~~~~~~a~~~~~~~~--~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-------~~~~~~~--- 386 (512)
.+.-.|++.+|.+++...- ...|...+ -..+|.+.-.+.+.|.+..+..+|....+ .|++|..
T Consensus 249 ~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~t 328 (696)
T KOG2471|consen 249 LEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFT 328 (696)
T ss_pred HHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCccee
Confidence 3455788888888775421 11111111 11234454455566666666666665553 3544422
Q ss_pred --------HhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHh
Q 010342 387 --------TTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCR 433 (512)
Q Consensus 387 --------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 433 (512)
.+||. .-.|...|++-.|.+.|.+.+.. +..++..|-.|..+|..
T Consensus 329 ls~nks~eilYNc-G~~~Lh~grPl~AfqCf~~av~v-fh~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 329 LSQNKSMEILYNC-GLLYLHSGRPLLAFQCFQKAVHV-FHRNPRLWLRLAECCIM 381 (696)
T ss_pred hhcccchhhHHhh-hHHHHhcCCcHHHHHHHHHHHHH-HhcCcHHHHHHHHHHHH
Confidence 22332 33567788888888888887643 35567788888888764
No 354
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=80.59 E-value=48 Score=30.68 Aligned_cols=132 Identities=13% Similarity=0.072 Sum_probs=89.6
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHH
Q 010342 316 VTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDG 395 (512)
Q Consensus 316 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 395 (512)
..|...+....+....+.|..+|.+.-+..-+.+++..+++++..++ .|+...|..+|+--... .+.+..--+-.+.-
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~-f~d~~~y~~kyl~f 475 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK-FPDSTLYKEKYLLF 475 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh-CCCchHHHHHHHHH
Confidence 34566677777777888888888885433336778888888888664 57788888888766553 22333333455566
Q ss_pred HHhcCCHHHHHHHHHHhhcCCCCCC--HHhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 010342 396 LCESNQLDEAKRFWDDIVWPSNIHD--NYVYAAMIKGLCRSGKIHEAVHFLYELVDS 450 (512)
Q Consensus 396 ~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 450 (512)
+...++-+.|..+|+..+.. +..+ ...|..++.--..-|+...+..+=+.|.+.
T Consensus 476 Li~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~ 531 (660)
T COG5107 476 LIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL 531 (660)
T ss_pred HHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH
Confidence 67788888888888865432 1222 347888888777788887777776666654
No 355
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.41 E-value=81 Score=32.57 Aligned_cols=19 Identities=26% Similarity=0.151 Sum_probs=15.4
Q ss_pred ccccCcHHHHHHHHHHHHh
Q 010342 4 LCGLSRVGEAHKLFFDMKS 22 (512)
Q Consensus 4 ~~~~g~~~~A~~~~~~~~~ 22 (512)
+..+|++++|.+.|+++..
T Consensus 356 lf~q~~f~ea~~~F~~~~~ 374 (877)
T KOG2063|consen 356 LFLQKQFEEAMSLFEKSEI 374 (877)
T ss_pred HHHhhhHHHHHHHHHhhcc
Confidence 3568899999999998765
No 356
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=79.21 E-value=9.5 Score=26.56 Aligned_cols=55 Identities=24% Similarity=0.253 Sum_probs=27.6
Q ss_pred HhcCChhhHHHHHHHHHHHhhhcCCCC---cchHhHHHHHHHHHccCChhHHHHHHHh
Q 010342 75 LRTRDVERANVLMFKLWERMKEEEDLS---VNNAAFANLVDSLCREGYVNEVFRIAED 129 (512)
Q Consensus 75 ~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 129 (512)
.+.+++..|.+.+.+.++......... .-....-.+...+...|++++|...+++
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~e 66 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEE 66 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 456777777777777766544432222 1111222233444455555555555554
No 357
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=78.91 E-value=19 Score=25.15 Aligned_cols=50 Identities=16% Similarity=0.274 Sum_probs=21.3
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 010342 431 LCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNG 486 (512)
Q Consensus 431 ~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 486 (512)
+...|++++|..+.+.. ..||...|..|. -.+.|.-+++..-+.+|...|
T Consensus 49 LmNrG~Yq~Al~l~~~~----~~pdlepw~ALc--e~rlGl~s~l~~rl~rla~sg 98 (115)
T TIGR02508 49 LMNRGDYQSALQLGNKL----CYPDLEPWLALC--EWRLGLGSALESRLNRLAASG 98 (115)
T ss_pred HHccchHHHHHHhcCCC----CCchHHHHHHHH--HHhhccHHHHHHHHHHHHhCC
Confidence 34445555555444332 244444443332 223444444444444444443
No 358
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=78.61 E-value=27 Score=26.65 Aligned_cols=50 Identities=12% Similarity=0.105 Sum_probs=32.9
Q ss_pred CcchHHHHHHHHhccCc-hhHHHHHHHHHHhCCCCCchhhHHHHHHHHhcc
Q 010342 173 SLVSYNSIVHGLCKHGG-CMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGE 222 (512)
Q Consensus 173 ~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 222 (512)
+...|..++.+.++..- ---+..+|.-+.+.+.++++.-|..++.++.+-
T Consensus 78 ~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li~~~l~g 128 (145)
T PF13762_consen 78 DNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLIKAALRG 128 (145)
T ss_pred ccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC
Confidence 55677777777755554 334566677777666677777777777766554
No 359
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=77.59 E-value=53 Score=29.47 Aligned_cols=86 Identities=5% Similarity=-0.080 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHh---cCChhhHHHH
Q 010342 10 VGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLR---TRDVERANVL 86 (512)
Q Consensus 10 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~---~~~~~~a~~~ 86 (512)
.+.-+.++++.++.++ .+.......+..+.+..+.++..+.++++.... +-+...|...+..... .-.++....+
T Consensus 47 ~E~klsilerAL~~np-~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~-~~~~~LW~~yL~~~q~~~~~f~v~~~~~~ 124 (321)
T PF08424_consen 47 AERKLSILERALKHNP-DSERLLLGYLEEGEKVWDSEKLAKKWEELLFKN-PGSPELWREYLDFRQSNFASFTVSDVRDV 124 (321)
T ss_pred HHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHhccCcHHHHHHH
Confidence 4566778888888743 467778888888888888888899999998863 2256677777765544 3457778888
Q ss_pred HHHHHHHhhhc
Q 010342 87 MFKLWERMKEE 97 (512)
Q Consensus 87 ~~~~~~~~~~~ 97 (512)
|.+.++.+...
T Consensus 125 y~~~l~~L~~~ 135 (321)
T PF08424_consen 125 YEKCLRALSRR 135 (321)
T ss_pred HHHHHHHHHHh
Confidence 87777766543
No 360
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=77.57 E-value=9.1 Score=25.34 Aligned_cols=44 Identities=18% Similarity=0.212 Sum_probs=18.2
Q ss_pred cCCHHHHHHHHHHhhcCCCCCC--HHhHHHHHHHHHhcCCHHHHHH
Q 010342 399 SNQLDEAKRFWDDIVWPSNIHD--NYVYAAMIKGLCRSGKIHEAVH 442 (512)
Q Consensus 399 ~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~ 442 (512)
.++.++|+..|...++....+. ..++..++.+|+.-|++.++++
T Consensus 19 ~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~ 64 (80)
T PF10579_consen 19 QNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLA 64 (80)
T ss_pred cchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555554443221111 1134444444555555444443
No 361
>PRK11619 lytic murein transglycosylase; Provisional
Probab=77.48 E-value=82 Score=31.58 Aligned_cols=117 Identities=15% Similarity=0.039 Sum_probs=63.7
Q ss_pred ccCCHHHHHHHHHHHHhCCCCCCc---ccHHHHHHHHHccCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHH
Q 010342 221 GESDLEKARKVLQFMLSKKDVDRT---RICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEE 297 (512)
Q Consensus 221 ~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 297 (512)
...+.+.|..++..+......... .+...+.......+..+++...+....... .+......-+..-.+.++++.
T Consensus 253 ar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~~~dw~~ 330 (644)
T PRK11619 253 ARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTSLLERRVRMALGTGDRRG 330 (644)
T ss_pred HHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCcHHHHHHHHHHHHccCHHH
Confidence 345567777777776443322211 123333333333322445555555433222 233344444555557788888
Q ss_pred HHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhh
Q 010342 298 ALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQV 341 (512)
Q Consensus 298 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 341 (512)
+...+..|.... .....-.--+..++...|+.++|...|.+.
T Consensus 331 ~~~~i~~L~~~~--~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~ 372 (644)
T PRK11619 331 LNTWLARLPMEA--KEKDEWRYWQADLLLEQGRKAEAEEILRQL 372 (644)
T ss_pred HHHHHHhcCHhh--ccCHhhHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 888887775543 234444556666666678888888877764
No 362
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=76.75 E-value=3 Score=30.82 Aligned_cols=28 Identities=14% Similarity=0.462 Sum_probs=12.9
Q ss_pred CCHHHHHHHHHHHHHCCCCCChhhHHHHHH
Q 010342 435 GKIHEAVHFLYELVDSGVTPNIVCYNVVID 464 (512)
Q Consensus 435 g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 464 (512)
|.-.+|..+|.+|++.|-+|| .|+.|+.
T Consensus 109 gsk~DaY~VF~kML~~G~pPd--dW~~Ll~ 136 (140)
T PF11663_consen 109 GSKTDAYAVFRKMLERGNPPD--DWDALLK 136 (140)
T ss_pred ccCCcHHHHHHHHHhCCCCCc--cHHHHHH
Confidence 333445555555555554444 2444443
No 363
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=76.60 E-value=85 Score=31.29 Aligned_cols=121 Identities=13% Similarity=0.046 Sum_probs=70.5
Q ss_pred HHHccCCHHHHHHHHHHHHhCCCCCChH--hHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCH
Q 010342 360 GLFRLRRVEEAKEVFNCMLGIGVVADST--TYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKI 437 (512)
Q Consensus 360 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 437 (512)
++..-|+-++|..+.++|.... .|-.. -.-.+..+|+-.|+.....+++.-.+.. ...|+.-...+.-++.-..++
T Consensus 510 aL~~ygrqe~Ad~lI~el~~dk-dpilR~~Gm~t~alAy~GTgnnkair~lLh~aVsD-~nDDVrRaAVialGFVl~~dp 587 (929)
T KOG2062|consen 510 ALVVYGRQEDADPLIKELLRDK-DPILRYGGMYTLALAYVGTGNNKAIRRLLHVAVSD-VNDDVRRAAVIALGFVLFRDP 587 (929)
T ss_pred HHHHhhhhhhhHHHHHHHhcCC-chhhhhhhHHHHHHHHhccCchhhHHHhhcccccc-cchHHHHHHHHHheeeEecCh
Confidence 3445566677777888777643 22111 1234455677777777777776665533 345555555555566666777
Q ss_pred HHHHHHHHHHHHCCCCCChhhH--HHHHHHHHhcCCHHHHHHHHHHHHH
Q 010342 438 HEAVHFLYELVDSGVTPNIVCY--NVVIDGACKLSMKREAYQILREMRK 484 (512)
Q Consensus 438 ~~a~~~~~~~~~~~~~p~~~~~--~~l~~~~~~~g~~~~a~~~~~~m~~ 484 (512)
+....+..-+.+. ..|.+..= -.|.-+|+-.|. .+|..+++-|..
T Consensus 588 ~~~~s~V~lLses-~N~HVRyGaA~ALGIaCAGtG~-~eAi~lLepl~~ 634 (929)
T KOG2062|consen 588 EQLPSTVSLLSES-YNPHVRYGAAMALGIACAGTGL-KEAINLLEPLTS 634 (929)
T ss_pred hhchHHHHHHhhh-cChhhhhhHHHHHhhhhcCCCc-HHHHHHHhhhhc
Confidence 7777777655543 34444332 334455555554 457778777754
No 364
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=75.50 E-value=64 Score=29.30 Aligned_cols=68 Identities=19% Similarity=0.062 Sum_probs=45.3
Q ss_pred CCcHHHHHHHHHHHhhcCCHHHHHHHHHhhcccCCC--CCChhhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 010342 312 APDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGY--SPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLG 379 (512)
Q Consensus 312 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 379 (512)
.....++..+...+.+.|.++.|...+.+....... ...+.....-.......|+..+|...++....
T Consensus 143 ~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 143 EELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred hHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345567778888888888888888888775432210 11333444455566677888888888887776
No 365
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=75.39 E-value=6.7 Score=19.53 Aligned_cols=25 Identities=16% Similarity=0.010 Sum_probs=12.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 010342 459 YNVVIDGACKLSMKREAYQILREMR 483 (512)
Q Consensus 459 ~~~l~~~~~~~g~~~~a~~~~~~m~ 483 (512)
|..+...+...|++++|...++...
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~ 28 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKAL 28 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3444444555555555555555444
No 366
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=75.10 E-value=43 Score=27.09 Aligned_cols=91 Identities=13% Similarity=0.064 Sum_probs=47.2
Q ss_pred HHHHhcCCHHHHHHHHHHhhcCCCCCC--HHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCC
Q 010342 394 DGLCESNQLDEAKRFWDDIVWPSNIHD--NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSM 471 (512)
Q Consensus 394 ~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 471 (512)
..+...+++++|...++.........+ ..+--.|.+.....|.+++|...++...+.+. .......-...+...|+
T Consensus 97 k~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill~kg~ 174 (207)
T COG2976 97 KAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILLAKGD 174 (207)
T ss_pred HHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHHHcCc
Confidence 445566666666666665543210000 01112334555666677777766655443321 11122334456666777
Q ss_pred HHHHHHHHHHHHHCC
Q 010342 472 KREAYQILREMRKNG 486 (512)
Q Consensus 472 ~~~a~~~~~~m~~~~ 486 (512)
.++|+.-|+.....+
T Consensus 175 k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 175 KQEARAAYEKALESD 189 (207)
T ss_pred hHHHHHHHHHHHHcc
Confidence 777777777766654
No 367
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=75.02 E-value=13 Score=24.67 Aligned_cols=46 Identities=9% Similarity=0.104 Sum_probs=36.0
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCC--hhhHHHHHHHHHhcCCHHHHHHH
Q 010342 433 RSGKIHEAVHFLYELVDSGVTPN--IVCYNVVIDGACKLSMKREAYQI 478 (512)
Q Consensus 433 ~~g~~~~a~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~ 478 (512)
...+.++|+..|....+.-..|. -.++..++.+++..|++.+++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56778899999999887644433 24567889999999999998876
No 368
>PRK10941 hypothetical protein; Provisional
Probab=74.66 E-value=43 Score=29.02 Aligned_cols=78 Identities=15% Similarity=0.080 Sum_probs=53.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhhcccCCCCCChhhHHHHHHHH
Q 010342 282 LNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGL 361 (512)
Q Consensus 282 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 361 (512)
.+.+-.+|.+.++++.|+++.+.+..-. +.++.-+.--.-.|.+.|.+..|..-++..+....-.|+.......+...
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~--P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~~l 261 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFD--PEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIHSI 261 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHHHH
Confidence 3455566778888888888888887765 55666666667778888888888877777666665555555555444443
No 369
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=74.64 E-value=49 Score=27.63 Aligned_cols=72 Identities=19% Similarity=0.286 Sum_probs=40.4
Q ss_pred CCcHHHHHHHHHHHhhcCCHHHHHHHHHhhcccCCC-----------CCChhhHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 010342 312 APDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGY-----------SPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGI 380 (512)
Q Consensus 312 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 380 (512)
+.+.....+++ +...|+..+|+.-++......|. .|.+.....++..| ..+++++|.+++.++.+.
T Consensus 191 ~yt~dgLeaii--fta~GDMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml~~~-~~~~~~~A~~il~~lw~l 267 (333)
T KOG0991|consen 191 NYTDDGLEAII--FTAQGDMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKMLQAC-LKRNIDEALKILAELWKL 267 (333)
T ss_pred CCCcchHHHhh--hhccchHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHHHHH-HhccHHHHHHHHHHHHHc
Confidence 34444444443 44567777777766554433322 45555555555544 345677777777777776
Q ss_pred CCCCCh
Q 010342 381 GVVADS 386 (512)
Q Consensus 381 ~~~~~~ 386 (512)
|+.|..
T Consensus 268 gysp~D 273 (333)
T KOG0991|consen 268 GYSPED 273 (333)
T ss_pred CCCHHH
Confidence 665543
No 370
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=74.45 E-value=64 Score=31.11 Aligned_cols=152 Identities=9% Similarity=-0.044 Sum_probs=88.8
Q ss_pred CCCChhhHHHHHHHHHcc--CCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhH
Q 010342 347 YSPGIVTYNAVLRGLFRL--RRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVY 424 (512)
Q Consensus 347 ~~~~~~~~~~l~~~~~~~--~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 424 (512)
-.|+..+...++.-.... ...+-+-.++..|... +.|--.+.|...-.+...|+...|...+..+............
T Consensus 567 ~~~~~~~~k~~~~r~~~~~i~e~e~~~~~~~~~~~~-~~p~w~~ln~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~ 645 (886)
T KOG4507|consen 567 KMPDDHARKILLSRINNYTIPEEEIGSFLFHAINKP-NAPIWLILNEAGLYWRAVGNSTFAIACLQRALNLAPLQQDVPL 645 (886)
T ss_pred cCchHHHHHHHHHHHhcccCcHHHHHHHHHHHhcCC-CCCeEEEeecccceeeecCCcHHHHHHHHHHhccChhhhcccH
Confidence 345555554444332221 1223344444444432 2333333443333344578888888888877543222223345
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHhh
Q 010342 425 AAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLH 501 (512)
Q Consensus 425 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~ 501 (512)
-.|.....+.|-..+|-.++.+..... ...+.++..+.+++....+.+.|++.|+...+.. +-+.+.-+.|...-
T Consensus 646 v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~-~~~~~~~~~l~~i~ 720 (886)
T KOG4507|consen 646 VNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGALEAFRQALKLT-TKCPECENSLKLIR 720 (886)
T ss_pred HHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcC-CCChhhHHHHHHHH
Confidence 556677777777778888887777655 4466677788888888999999999998887642 22344445554433
No 371
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=73.89 E-value=95 Score=30.55 Aligned_cols=280 Identities=11% Similarity=0.018 Sum_probs=149.3
Q ss_pred hhHHHHHHHHHHhCCCCCchhhHHHHHH--H-HhccCCHHHHHHHHHHHHh----CCCCCCcccHHHHHHHHHccC----
Q 010342 190 CMRAYQLLEEGIQFGYLPSEHTYKVLVE--G-LCGESDLEKARKVLQFMLS----KKDVDRTRICNIYLRALCLIK---- 258 (512)
Q Consensus 190 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~--~-~~~~g~~~~a~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~~---- 258 (512)
...+.+.++...+.|. .........+. + +....|.+.|..+++...+ ......+.....+..+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~-~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~ 306 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGH-SEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEK 306 (552)
T ss_pred hhHHHHHHHHHHhhcc-hHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCcc
Confidence 4568888888877663 22222222222 2 4467789999999988866 111113445666677776643
Q ss_pred -ChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHh-cCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHh--hcCCHHHH
Q 010342 259 -NPTELLNVLVFMLQTQCQPDVITLNTVINGFCK-MGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLL--NVGRIQEA 334 (512)
Q Consensus 259 -~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~a 334 (512)
+.+.|..++...-+.|.+ +.......+..... ..+...|.++|......+. .....+.+++.... -..+...|
T Consensus 307 ~d~~~A~~~~~~aA~~g~~-~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~--~~A~~~la~~y~~G~gv~r~~~~A 383 (552)
T KOG1550|consen 307 IDYEKALKLYTKAAELGNP-DAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGH--ILAIYRLALCYELGLGVERNLELA 383 (552)
T ss_pred ccHHHHHHHHHHHHhcCCc-hHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCC--hHHHHHHHHHHHhCCCcCCCHHHH
Confidence 566788888888877743 44433222222222 2467889999999888763 33333333222222 34567888
Q ss_pred HHHHHhhcccCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHH---Hh----cCCHHHHHH
Q 010342 335 LNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGL---CE----SNQLDEAKR 407 (512)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~---~~----~g~~~~a~~ 407 (512)
..++.+.. ..+ .|...--...+..+.. +..+.+...+..+.+.|.......-..++... .. ..+.+.+..
T Consensus 384 ~~~~k~aA-~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~~~~q~~a~~l~~~~~~~~~~~~~~~~~~~~~~ 460 (552)
T KOG1550|consen 384 FAYYKKAA-EKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGYEVAQSNAAYLLDQSEEDLFSRGVISTLERAFS 460 (552)
T ss_pred HHHHHHHH-Hcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhhhHHhhHHHHHHHhccccccccccccchhHHHH
Confidence 88887754 443 3332222233334444 77777777777777665432222111111111 11 124556666
Q ss_pred HHHHhhcCCCCCCHHhHHHHHHHHHhc----CCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh----cCCHHHHHHHH
Q 010342 408 FWDDIVWPSNIHDNYVYAAMIKGLCRS----GKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACK----LSMKREAYQIL 479 (512)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~ 479 (512)
.+.+....| +......|.+.|... .+++.|...+......+ ...+|+ +...+-. .. +..|.+++
T Consensus 461 ~~~~a~~~g---~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~---~~~~~n-lg~~~e~g~g~~~-~~~a~~~~ 532 (552)
T KOG1550|consen 461 LYSRAAAQG---NADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG---AQALFN-LGYMHEHGEGIKV-LHLAKRYY 532 (552)
T ss_pred HHHHHHhcc---CHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh---hHHHhh-hhhHHhcCcCcch-hHHHHHHH
Confidence 666665433 344455555544432 35677777776665544 222222 2222211 22 56677777
Q ss_pred HHHHH
Q 010342 480 REMRK 484 (512)
Q Consensus 480 ~~m~~ 484 (512)
+....
T Consensus 533 ~~~~~ 537 (552)
T KOG1550|consen 533 DQASE 537 (552)
T ss_pred HHHHh
Confidence 76654
No 372
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=73.57 E-value=28 Score=24.39 Aligned_cols=58 Identities=19% Similarity=0.173 Sum_probs=31.0
Q ss_pred HHHhcCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHhccCchhHHHHHHHHHHhCCCCCchhhH
Q 010342 148 SLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTY 212 (512)
Q Consensus 148 ~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 212 (512)
.+...|++++|..+.+.+ ..||...|..|-. .+.|..+++..-+..+...| .|....|
T Consensus 48 SLmNrG~Yq~Al~l~~~~----~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg-~p~lq~F 105 (115)
T TIGR02508 48 SLMNRGDYQSALQLGNKL----CYPDLEPWLALCE--WRLGLGSALESRLNRLAASG-DPRLQTF 105 (115)
T ss_pred HHHccchHHHHHHhcCCC----CCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC-CHHHHHH
Confidence 345566666666655544 2556666655433 34555555555555555544 3433333
No 373
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=73.33 E-value=12 Score=23.61 Aligned_cols=47 Identities=19% Similarity=0.116 Sum_probs=24.4
Q ss_pred cccCcHHHHHHHHHHHHhCCCCCChHhHHHHHHHH-----HhcCChhHHHHH
Q 010342 5 CGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGY-----CRTGEMDVAYKV 51 (512)
Q Consensus 5 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~-----~~~~~~~~a~~~ 51 (512)
...|++-+|-++++.+-.....|....+..+|+.. .+.|+...|..+
T Consensus 10 ~n~g~f~EaHEvlE~~W~~~~~~~~~~lqglIq~A~a~~h~~~gn~~gA~~l 61 (62)
T PF03745_consen 10 FNAGDFFEAHEVLEELWKAAPGPERDFLQGLIQLAVALYHLRRGNPRGARRL 61 (62)
T ss_dssp HHTT-HHHHHHHHHHHCCCT-CCHHHHHHHHHHHHHHHHHHHCTSHHHHHHH
T ss_pred HcCCCHHHhHHHHHHHHHHCCcchHHHHHHHHHHHHHHHHHHhCCHHHHHHh
Confidence 45666666777776666543333344455555443 245666655554
No 374
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=73.07 E-value=33 Score=25.27 Aligned_cols=41 Identities=17% Similarity=0.228 Sum_probs=20.7
Q ss_pred HHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010342 443 FLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMR 483 (512)
Q Consensus 443 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 483 (512)
.+..+..-++-|++.....-+++|.+.+++..|.++++-.+
T Consensus 71 glN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK 111 (149)
T KOG4077|consen 71 GLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIK 111 (149)
T ss_pred HHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 33444444445555555555555555555555555555444
No 375
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=72.61 E-value=76 Score=28.86 Aligned_cols=49 Identities=12% Similarity=0.113 Sum_probs=35.0
Q ss_pred cCChhhHHHHHHHHHHHhhhcCCCCcchHhHHHHHHHHHccCChhHHHH
Q 010342 77 TRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFR 125 (512)
Q Consensus 77 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 125 (512)
.++.+.|.+.+...-++.+...+...+...+..+++.|...++|+..-+
T Consensus 25 ~~~~~~~ie~Ll~~EkqtR~~~D~~s~~kv~~~i~~lc~~~~~w~~Lne 73 (439)
T KOG1498|consen 25 QIDLEAAIEELLNLEKQTRLASDMASNTKVLEEIMKLCFSAKDWDLLNE 73 (439)
T ss_pred hhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccHHHHHH
Confidence 5666677666666666666666777777788888888888888876443
No 376
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=72.40 E-value=63 Score=27.88 Aligned_cols=48 Identities=10% Similarity=0.092 Sum_probs=31.9
Q ss_pred cccCcHHHHHHHHHHHHhCCCCCChHh-------HHHHHHHHHhcCChhHHHHHH
Q 010342 5 CGLSRVGEAHKLFFDMKSRGHVPNVVS-------YTTLIHGYCRTGEMDVAYKVF 52 (512)
Q Consensus 5 ~~~g~~~~A~~~~~~~~~~~~~~~~~~-------~~~l~~~~~~~~~~~~a~~~~ 52 (512)
.+.+++++|+..+.++...|...+..+ ..-+...|.+.|++....+..
T Consensus 14 v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i 68 (421)
T COG5159 14 VKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTI 68 (421)
T ss_pred hhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHH
Confidence 456788888888888888876655443 345566667777666554443
No 377
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=72.12 E-value=1.1e+02 Score=30.67 Aligned_cols=103 Identities=13% Similarity=0.054 Sum_probs=59.5
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCC---ChhhHHHHHHHHHhcCChhhHHHHHHHHHHHhhhcCCCCcchHhHHHHH
Q 010342 35 LIHGYCRTGEMDVAYKVFDEMRHCGVLP---NSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLV 111 (512)
Q Consensus 35 l~~~~~~~~~~~~a~~~~~~m~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 111 (512)
-+..+.+.+.+++|++.-+.-... .| -.......|..+...|+++.|-....+++.. +..-|.--+
T Consensus 362 hi~Wll~~k~yeeAl~~~k~~~~~--~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn---------~~~eWe~~V 430 (846)
T KOG2066|consen 362 HIDWLLEKKKYEEALDAAKASIGN--EERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN---------NAAEWELWV 430 (846)
T ss_pred hHHHHHHhhHHHHHHHHHHhccCC--ccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc---------hHHHHHHHH
Confidence 456778889999999887765432 33 2234566777778888888886654444321 122222233
Q ss_pred HHHHccCChhHHHHHHHhcCCCCCCCcchhHHHHHHHHHh
Q 010342 112 DSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCR 151 (512)
Q Consensus 112 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 151 (512)
..+...++... ++.-++......+...|..++..+..
T Consensus 431 ~~f~e~~~l~~---Ia~~lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 431 FKFAELDQLTD---IAPYLPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred HHhccccccch---hhccCCCCCcccCchHHHHHHHHHHH
Confidence 33333333332 33334444444566778777777765
No 378
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=71.81 E-value=66 Score=27.80 Aligned_cols=203 Identities=12% Similarity=0.108 Sum_probs=105.2
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCChhh-------HHHHHHHHHhcCChhhHHHHHHHHHHHhhhcCCCCcchHh
Q 010342 34 TLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLT-------YSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAA 106 (512)
Q Consensus 34 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~-------~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 106 (512)
-+.....+.+++++|...+.++...|+..|..+ ...+...|...|+...-.+.....-+.|... ...-.+..
T Consensus 8 e~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~f-tk~k~~Ki 86 (421)
T COG5159 8 ELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDF-TKPKITKI 86 (421)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHh-cchhHHHH
Confidence 455667788999999999999999988776654 4456788888888777665554444433332 11222233
Q ss_pred HHHHHHHHHcc-CChhHHHHHHHhcCCCCCCCc-----chhHHHHHHHHHhcCChhhHHHHH----HHHHHcCCCCCcch
Q 010342 107 FANLVDSLCRE-GYVNEVFRIAEDMPQGKSVNE-----EFACGHMIDSLCRSGRNHGASRVV----YVMRKRGLTPSLVS 176 (512)
Q Consensus 107 ~~~l~~~~~~~-g~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~----~~~~~~g~~p~~~~ 176 (512)
..+|+.-+... ..++.-+.+.....+....-. ...-.-++..+.+.|.+.+|+.+. .++++..-+|+..+
T Consensus 87 irtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~ 166 (421)
T COG5159 87 IRTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLIT 166 (421)
T ss_pred HHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceee
Confidence 34444443322 234444443333221110000 111223667778888888887654 44555555565554
Q ss_pred HHHH-HHHHhccCchhHHHHHHHHHHh----CCCCCchhhHHHHHHHH--hccCCHHHHHHHHHHHHh
Q 010342 177 YNSI-VHGLCKHGGCMRAYQLLEEGIQ----FGYLPSEHTYKVLVEGL--CGESDLEKARKVLQFMLS 237 (512)
Q Consensus 177 ~~~l-~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~~~l~~~~--~~~g~~~~a~~~~~~~~~ 237 (512)
...+ -.+|..-.+..++..-+..++. .-.+|....-.-++++- |.-.++..|..+|-+..+
T Consensus 167 vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~E 234 (421)
T COG5159 167 VHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLDLLSGILHCDDRDYKTASSYFIEALE 234 (421)
T ss_pred hhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHHHhccceeeccccchhHHHHHHHHHh
Confidence 3322 2234344444444333333221 12334333333333332 344556666666655543
No 379
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=71.05 E-value=1.1e+02 Score=30.19 Aligned_cols=32 Identities=22% Similarity=0.146 Sum_probs=0.0
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCChHHHHHHHH
Q 010342 468 KLSMKREAYQILREMRKNGLNPDAVTWRILDK 499 (512)
Q Consensus 468 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~ 499 (512)
+.|++.+|.+.+-.+.+.++-|...-...|.+
T Consensus 507 ~~~~~~~Aa~~Lv~Ll~~~~~Pk~f~~~LL~d 538 (566)
T PF07575_consen 507 DEGDFREAASLLVSLLKSPIAPKSFWPLLLCD 538 (566)
T ss_dssp --------------------------------
T ss_pred hhhhHHHHHHHHHHHHCCCCCcHHHHHHHHHH
Confidence 35778888877777777777776655555543
No 380
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=70.86 E-value=38 Score=27.01 Aligned_cols=67 Identities=15% Similarity=0.199 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHhCCCCCCh--Hh-----HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCC
Q 010342 10 VGEAHKLFFDMKSRGHVPNV--VS-----YTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRD 79 (512)
Q Consensus 10 ~~~A~~~~~~~~~~~~~~~~--~~-----~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~ 79 (512)
++.|+.+|+.+.+.-..|.. .. -...+..|.+.|.+++|.++|++.-.. |+......-+....+..+
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~d---~~~~~~r~kL~~II~~Kd 158 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFSD---PESQKLRMKLLMIIREKD 158 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---CCchhHHHHHHHHHHccc
Confidence 57788888888776333311 11 123344688999999999999998873 555555444444444433
No 381
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=70.38 E-value=15 Score=29.88 Aligned_cols=61 Identities=10% Similarity=0.032 Sum_probs=38.4
Q ss_pred HHHHHHHHhcCChhHH---HHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHHHhh
Q 010342 33 TTLIHGYCRTGEMDVA---YKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMK 95 (512)
Q Consensus 33 ~~l~~~~~~~~~~~~a---~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 95 (512)
...+......++.+.. .+..++..+. .|++..|..++.++...|+.++|.+...+...-.|
T Consensus 112 ~~~l~~~~~~~~~~~l~~~~~~a~~~l~~--~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 112 AALLLLARLPPDPEMLEAYIEWAERLLRR--RPDPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred HHHHHhhcCCCCHHHHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 3333333344444433 3444444443 68888888888888888888888887777766654
No 382
>PRK12798 chemotaxis protein; Reviewed
Probab=70.27 E-value=91 Score=28.79 Aligned_cols=212 Identities=15% Similarity=0.047 Sum_probs=0.0
Q ss_pred cCcHHHHHHHHHHHHhCCCCCChHhHHHHHHH-HHhcCChhHHHHHHHHHHhC--CCCCChhhHHHHHHHHHhcCChhhH
Q 010342 7 LSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHG-YCRTGEMDVAYKVFDEMRHC--GVLPNSLTYSVLVRGVLRTRDVERA 83 (512)
Q Consensus 7 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~m~~~--~~~~~~~~~~~l~~~~~~~~~~~~a 83 (512)
.|+-++|.+.|..+.....++....|-.|+.+ ..-..++.+|+.+|+...-. |.-.....+..-+......|+.+++
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLlaPGTLvEEAALRRsi~la~~~g~~~rf 204 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLLAPGTLVEEAALRRSLFIAAQLGDADKF 204 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHhCCchHHHHHHHHHhhHHHHhcCcHHHH
Q ss_pred HHHHHHHHHHhhhcCCCCcchHhHHHHHHHHHccCChhHHHHHHHhcCCCCCCCcchhHHHHHHHHHhcCChhhHHHHHH
Q 010342 84 NVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVY 163 (512)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 163 (512)
..+..++++++....=..-=..-|...+..+.....++....++..|... .....|-.+.+.-.-.|+.+-|.-.-+
T Consensus 205 ~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~~---~q~~lYL~iAR~Ali~Gk~~lA~~As~ 281 (421)
T PRK12798 205 EALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDPE---RQRELYLRIARAALIDGKTELARFASE 281 (421)
T ss_pred HHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCch---hHHHHHHHHHHHHHHcCcHHHHHHHHH
Q ss_pred HHHHcCCCCCcchHHHHHHHHhc---cCchhHHHHHHHHHHhCCCCCchhhHHHHHHHHhc
Q 010342 164 VMRKRGLTPSLVSYNSIVHGLCK---HGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCG 221 (512)
Q Consensus 164 ~~~~~g~~p~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 221 (512)
+.....-..+...-...+..-.. ..+++.+.+.+..+-...+.+....+.........
T Consensus 282 ~A~~L~~~~~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I~~~~L~~~Dr~Ll~AA~~va~ 342 (421)
T PRK12798 282 RALKLADPDSADAARARLYRGAALVASDDAESALEELSQIDRDKLSERDRALLEAARSVAR 342 (421)
T ss_pred HHHHhccCCCcchHHHHHHHHHHccCcccHHHHHHHHhcCChhhCChhhHHHHHHHHHHHH
No 383
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=70.14 E-value=77 Score=27.90 Aligned_cols=126 Identities=10% Similarity=0.010 Sum_probs=72.6
Q ss_pred CCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcC-------CHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHh----
Q 010342 365 RRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESN-------QLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCR---- 433 (512)
Q Consensus 365 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---- 433 (512)
.+..+|..+|+...+.|..+...+...+...|..-. +...|...+.++-..+ +......+...|..
T Consensus 127 ~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~Gv 203 (292)
T COG0790 127 LDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG---NPDAQLLLGRMYEKGLGV 203 (292)
T ss_pred cCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc---CHHHHHHHHHHHHcCCCC
Confidence 366777777777777664433222333444443321 2336777777766554 33344444444433
Q ss_pred cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcC---------------CHHHHHHHHHHHHHCCCCCChHHHHHH
Q 010342 434 SGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLS---------------MKREAYQILREMRKNGLNPDAVTWRIL 497 (512)
Q Consensus 434 ~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---------------~~~~a~~~~~~m~~~~~~p~~~~~~~l 497 (512)
..+.++|...|.+..+.|. ......+. .+...| +...|...+......|..........+
T Consensus 204 ~~d~~~A~~wy~~Aa~~g~---~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 278 (292)
T COG0790 204 PRDLKKAFRWYKKAAEQGD---GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGFDNACEALRAL 278 (292)
T ss_pred CcCHHHHHHHHHHHHHCCC---HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCChhHHHHHHHH
Confidence 3467788888888877763 22222222 334333 777888888888888776666666643
No 384
>KOG2582 consensus COP9 signalosome, subunit CSN3 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=70.09 E-value=83 Score=28.30 Aligned_cols=16 Identities=31% Similarity=0.158 Sum_probs=9.3
Q ss_pred ccCchhHHHHHHHHHH
Q 010342 186 KHGGCMRAYQLLEEGI 201 (512)
Q Consensus 186 ~~~~~~~a~~~~~~~~ 201 (512)
...+++.|+-+|...+
T Consensus 195 glk~fe~Al~~~e~~v 210 (422)
T KOG2582|consen 195 GLKRFERALYLLEICV 210 (422)
T ss_pred ccccHHHHHHHHHHHH
Confidence 3556666666666554
No 385
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=69.87 E-value=73 Score=27.52 Aligned_cols=53 Identities=15% Similarity=0.071 Sum_probs=23.4
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHh-----ccCchhHHHHHH
Q 010342 145 MIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLC-----KHGGCMRAYQLL 197 (512)
Q Consensus 145 l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~-----~~~~~~~a~~~~ 197 (512)
-|-.|.+.+.+..+.++-....+..-.-+...|..++..|. -.|.+++|+++.
T Consensus 124 CILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 124 CILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLLPLGHFSEAEELV 181 (309)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHhccccHHHHHHHH
Confidence 34445555555555555554444211112223444333332 255555555544
No 386
>PRK09687 putative lyase; Provisional
Probab=69.54 E-value=78 Score=27.74 Aligned_cols=134 Identities=14% Similarity=0.126 Sum_probs=55.7
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcC-CHHHHHHHHHhhcccCCCCCChhhHHHHH
Q 010342 280 ITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVG-RIQEALNLLYQVMPQRGYSPGIVTYNAVL 358 (512)
Q Consensus 280 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 358 (512)
.+-...+.++.+.++ +.+...+-.+.. .++.......+.++.+.+ +.+.+...+...+. .++...-...+
T Consensus 143 ~VR~~a~~aLg~~~~-~~ai~~L~~~L~----d~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~----D~~~~VR~~A~ 213 (280)
T PRK09687 143 NVRFAVAFALSVIND-EAAIPLLINLLK----DPNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ----DKNEEIRIEAI 213 (280)
T ss_pred HHHHHHHHHHhccCC-HHHHHHHHHHhc----CCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc----CCChHHHHHHH
Confidence 333344444444444 233444434333 223333333333444332 12334444444332 22444444455
Q ss_pred HHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHH
Q 010342 359 RGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGL 431 (512)
Q Consensus 359 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 431 (512)
.++.+.++. .+...+-...+.+ + .....+.++...|+. +|...+..+.+. .+|..+-...+.++
T Consensus 214 ~aLg~~~~~-~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a~ 277 (280)
T PRK09687 214 IGLALRKDK-RVLSVLIKELKKG---T--VGDLIIEAAGELGDK-TLLPVLDTLLYK--FDDNEIITKAIDKL 277 (280)
T ss_pred HHHHccCCh-hHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-hHHHHHHHHHhh--CCChhHHHHHHHHH
Confidence 555555553 3333333333322 1 123445555555553 455555555432 23444444444443
No 387
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=69.23 E-value=21 Score=21.02 Aligned_cols=34 Identities=15% Similarity=0.231 Sum_probs=23.3
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHH
Q 010342 39 YCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVR 72 (512)
Q Consensus 39 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~ 72 (512)
..+.|-.+++..++++|.+.|+..+...+..++.
T Consensus 12 Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 12 AKRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 4456677777777777777777767666666554
No 388
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=69.22 E-value=7.1 Score=28.96 Aligned_cols=31 Identities=29% Similarity=0.505 Sum_probs=23.5
Q ss_pred cCChhHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 010342 42 TGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGV 74 (512)
Q Consensus 42 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~ 74 (512)
.|.-..|-.+|.+|++.|-+||. |+.|+..+
T Consensus 108 ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 108 YGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred hccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 45667789999999999988775 66666543
No 389
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=69.18 E-value=1.1e+02 Score=29.18 Aligned_cols=181 Identities=11% Similarity=0.018 Sum_probs=121.7
Q ss_pred CCCCcccHHHHHHHHHccCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHH
Q 010342 240 DVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFT 319 (512)
Q Consensus 240 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 319 (512)
.+.+......++..+..+....-+..+..+|+..|- +-..|..++++|... ..+.-..+|+++.+.. -.|...-.
T Consensus 62 ~~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e--~kmal~el~q~y~en-~n~~l~~lWer~ve~d--fnDvv~~R 136 (711)
T COG1747 62 QLLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGE--SKMALLELLQCYKEN-GNEQLYSLWERLVEYD--FNDVVIGR 136 (711)
T ss_pred ccccchHHHHHHHHhccchHHHHHHHHHHHHHHhcc--hHHHHHHHHHHHHhc-CchhhHHHHHHHHHhc--chhHHHHH
Confidence 445556677888888888888888889999988763 667888999999988 6688889999888765 23444444
Q ss_pred HHHHHHhhcCCHHHHHHHHHhhcccCCCCCC------hhhHHHHHHHHHccCCHHHHHHHHHHHHh-CCCCCChHhHHHH
Q 010342 320 TIIFGLLNVGRIQEALNLLYQVMPQRGYSPG------IVTYNAVLRGLFRLRRVEEAKEVFNCMLG-IGVVADSTTYAIV 392 (512)
Q Consensus 320 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l 392 (512)
.+...| ..++...+...|.+++... -|. ...|..+... -..+.+....+...+.. .|...-...+.-+
T Consensus 137 eLa~~y-Ekik~sk~a~~f~Ka~yrf--I~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv 211 (711)
T COG1747 137 ELADKY-EKIKKSKAAEFFGKALYRF--IPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDV 211 (711)
T ss_pred HHHHHH-HHhchhhHHHHHHHHHHHh--cchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHH
Confidence 444444 4478888888887764322 221 1234444431 24567777777777765 3434444556667
Q ss_pred HHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHH
Q 010342 393 IDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGL 431 (512)
Q Consensus 393 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 431 (512)
-.-|....++++|.+++..+.+.+ ..|...-..++.-+
T Consensus 212 ~~~Ys~~eN~~eai~Ilk~il~~d-~k~~~ar~~~i~~l 249 (711)
T COG1747 212 YKKYSENENWTEAIRILKHILEHD-EKDVWARKEIIENL 249 (711)
T ss_pred HHHhccccCHHHHHHHHHHHhhhc-chhhhHHHHHHHHH
Confidence 778888999999999999887765 44544444444433
No 390
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=68.46 E-value=1.1e+02 Score=28.94 Aligned_cols=40 Identities=18% Similarity=0.161 Sum_probs=25.5
Q ss_pred hcCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHhccCch
Q 010342 151 RSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGC 190 (512)
Q Consensus 151 ~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~ 190 (512)
..+.++...+++..+...|.......++.....|.+.|..
T Consensus 29 ~~~~~d~cl~~l~~l~t~~~~~~~v~~n~av~~~~kt~~t 68 (696)
T KOG2471|consen 29 NNSEFDRCLELLQELETRGESSGPVLHNRAVVSYYKTGCT 68 (696)
T ss_pred CCcchHHHHHHHHHHHhccccccceeeehhhHHHHhcccc
Confidence 3466677777777777666655555566666666665544
No 391
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=68.39 E-value=14 Score=23.20 Aligned_cols=25 Identities=20% Similarity=0.267 Sum_probs=11.3
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHH
Q 010342 69 VLVRGVLRTRDVERANVLMFKLWER 93 (512)
Q Consensus 69 ~l~~~~~~~~~~~~a~~~~~~~~~~ 93 (512)
.+|.++...|++++|.+.+.++...
T Consensus 28 qvI~gllqlg~~~~a~eYi~~~~~~ 52 (62)
T PF14689_consen 28 QVIYGLLQLGKYEEAKEYIKELSKD 52 (62)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 3444455555555554444444443
No 392
>PRK09687 putative lyase; Provisional
Probab=68.20 E-value=83 Score=27.56 Aligned_cols=138 Identities=16% Similarity=0.086 Sum_probs=82.5
Q ss_pred CcHHHHHHHHHHHhhcCCHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHccC-CHHHHHHHHHHHHhCCCCCChHhHHH
Q 010342 313 PDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLR-RVEEAKEVFNCMLGIGVVADSTTYAI 391 (512)
Q Consensus 313 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~ 391 (512)
++.......+.++.+.++ ..++..+...+.. ++...-...+.++.+.+ +.+.+...+..+.. .++..+-..
T Consensus 140 ~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d----~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~ 211 (280)
T PRK09687 140 KSTNVRFAVAFALSVIND-EAAIPLLINLLKD----PNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIE 211 (280)
T ss_pred CCHHHHHHHHHHHhccCC-HHHHHHHHHHhcC----CCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHH
Confidence 455666666777777766 4566666665542 34444444555555542 24456666666654 456666777
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 010342 392 VIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGAC 467 (512)
Q Consensus 392 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 467 (512)
.+.++.+.|+. .|...+-...+.+ + .....+.++...|+. +|...+..+.+. .||..+-...+.+|.
T Consensus 212 A~~aLg~~~~~-~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 212 AIIGLALRKDK-RVLSVLIKELKKG---T--VGDLIIEAAGELGDK-TLLPVLDTLLYK--FDDNEIITKAIDKLK 278 (280)
T ss_pred HHHHHHccCCh-hHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-hHHHHHHHHHhh--CCChhHHHHHHHHHh
Confidence 77788888774 4444444444332 2 234567778888874 678888777764 346666655565554
No 393
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=67.72 E-value=35 Score=27.77 Aligned_cols=36 Identities=28% Similarity=0.262 Sum_probs=29.4
Q ss_pred CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 010342 452 VTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNP 489 (512)
Q Consensus 452 ~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p 489 (512)
..|++.+|..++.++...|+.++|.++.+++.. +-|
T Consensus 140 ~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~--lyP 175 (193)
T PF11846_consen 140 RRPDPNVYQRYALALALLGDPEEARQWLARARR--LYP 175 (193)
T ss_pred hCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCC
Confidence 378888888888888888888888888888876 455
No 394
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=67.52 E-value=41 Score=25.86 Aligned_cols=66 Identities=12% Similarity=0.008 Sum_probs=47.7
Q ss_pred HHHHHHHhCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChh
Q 010342 15 KLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVE 81 (512)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~ 81 (512)
++.+.+.+.|.+++. --..++..+...++.-.|.++++++.+.+...+..|-...+..+...|-+.
T Consensus 7 ~~~~~lk~~glr~T~-qR~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~Glv~ 72 (145)
T COG0735 7 DAIERLKEAGLRLTP-QRLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAGLVH 72 (145)
T ss_pred HHHHHHHHcCCCcCH-HHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCCCEE
Confidence 345566777888655 357788888888888999999999998876556666555566666665443
No 395
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=67.12 E-value=75 Score=26.64 Aligned_cols=18 Identities=11% Similarity=0.075 Sum_probs=9.5
Q ss_pred ccCchhHHHHHHHHHHhC
Q 010342 186 KHGGCMRAYQLLEEGIQF 203 (512)
Q Consensus 186 ~~~~~~~a~~~~~~~~~~ 203 (512)
..+++.+|.++|++....
T Consensus 166 ~leqY~~Ai~iyeqva~~ 183 (288)
T KOG1586|consen 166 QLEQYSKAIDIYEQVARS 183 (288)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 445555555555555443
No 396
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=67.04 E-value=18 Score=22.78 Aligned_cols=25 Identities=28% Similarity=0.284 Sum_probs=15.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 010342 459 YNVVIDGACKLSMKREAYQILREMR 483 (512)
Q Consensus 459 ~~~l~~~~~~~g~~~~a~~~~~~m~ 483 (512)
--.++.++...|++++|.++++++.
T Consensus 26 hLqvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 26 HLQVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3445666666666666666666654
No 397
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=65.55 E-value=1.1e+02 Score=28.28 Aligned_cols=56 Identities=18% Similarity=0.161 Sum_probs=38.7
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCChh--hHHHHHHHHH--hcCChhhHHHHHHHHHHH
Q 010342 37 HGYCRTGEMDVAYKVFDEMRHCGVLPNSL--TYSVLVRGVL--RTRDVERANVLMFKLWER 93 (512)
Q Consensus 37 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~--~~~~l~~~~~--~~~~~~~a~~~~~~~~~~ 93 (512)
..+.+.+++..|.++|+.+... ++++.. .+..+..+|. ..-++++|...++.+...
T Consensus 139 ~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 139 KELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3455789999999999999886 555554 3444555554 366788888877776554
No 398
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=65.03 E-value=1.7e+02 Score=30.04 Aligned_cols=322 Identities=13% Similarity=0.036 Sum_probs=165.1
Q ss_pred HHHHHHHHHHhCCC-------CCChhhHHHHHHHHHhcC----ChhhHHHHHHHHHHHhhhcCCCCcchHhHHHHHHHHH
Q 010342 47 VAYKVFDEMRHCGV-------LPNSLTYSVLVRGVLRTR----DVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLC 115 (512)
Q Consensus 47 ~a~~~~~~m~~~~~-------~~~~~~~~~l~~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 115 (512)
....+++++...|+ .++-+.|+.++.-+.+.. ...+..+++.......... + .|+ .-|+...
T Consensus 299 ng~amLe~L~~~gLFl~~Ldd~~~WfryH~LFaeFL~~r~~~~~~~~~~~lH~~Aa~w~~~~-g-~~~-----eAI~hAl 371 (894)
T COG2909 299 NGQAMLEELERRGLFLQRLDDEGQWFRYHHLFAEFLRQRLQRELAARLKELHRAAAEWFAEH-G-LPS-----EAIDHAL 371 (894)
T ss_pred cHHHHHHHHHhCCCceeeecCCCceeehhHHHHHHHHhhhccccCCchhHHHHHHHHHHHhC-C-ChH-----HHHHHHH
Confidence 34566777766663 234456777775554422 2344455555554444333 1 222 2556667
Q ss_pred ccCChhHHHHHHHhcCCC----C----------CCCcchhHH----HH--HHHHHhcCChhhHHHHHHHHHHcCCCCCcc
Q 010342 116 REGYVNEVFRIAEDMPQG----K----------SVNEEFACG----HM--IDSLCRSGRNHGASRVVYVMRKRGLTPSLV 175 (512)
Q Consensus 116 ~~g~~~~a~~~~~~~~~~----~----------~~~~~~~~~----~l--~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~ 175 (512)
+.|+++.|..+++..... + -.|+....+ .+ +-......++++|..++.++...-..|+..
T Consensus 372 aA~d~~~aa~lle~~~~~L~~~~~lsll~~~~~~lP~~~l~~~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~ 451 (894)
T COG2909 372 AAGDPEMAADLLEQLEWQLFNGSELSLLLAWLKALPAELLASTPRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHS 451 (894)
T ss_pred hCCCHHHHHHHHHhhhhhhhcccchHHHHHHHHhCCHHHHhhCchHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCccc
Confidence 778888888877765211 0 012221111 11 223456788999999988876543233222
Q ss_pred -------hHHHHHH-HHhccCchhHHHHHHHHHHhC----CCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC
Q 010342 176 -------SYNSIVH-GLCKHGGCMRAYQLLEEGIQF----GYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243 (512)
Q Consensus 176 -------~~~~l~~-~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 243 (512)
.++.+-. .....|+++.|.++.+..... -..+....+..+..+..-.|++++|..+.....+....-+
T Consensus 452 ~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~ 531 (894)
T COG2909 452 RQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHD 531 (894)
T ss_pred chhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcc
Confidence 2333322 233478899999988877653 2233556677788888889999999998887765433333
Q ss_pred cccHHHHH-----HHHHccCChhh--HHHHHHHHHhcC---CC---CChhhHHHHHHHHHhc-CCHHHHHHHHHHHhhCC
Q 010342 244 TRICNIYL-----RALCLIKNPTE--LLNVLVFMLQTQ---CQ---PDVITLNTVINGFCKM-GRIEEALKVLNDMVAGK 309 (512)
Q Consensus 244 ~~~~~~l~-----~~~~~~~~~~~--a~~~~~~~~~~~---~~---~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~ 309 (512)
...+.... ..+...|+... ....+....... .+ +-..+...+..++.+. +...++..-++-.....
T Consensus 532 ~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~ 611 (894)
T COG2909 532 VYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYT 611 (894)
T ss_pred cHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcc
Confidence 32222222 22344563322 222222222211 01 1223444555555552 12222333333222222
Q ss_pred CCCCcHHHH--HHHHHHHhhcCCHHHHHHHHHhhcc---cCCCCCChhhHHHHH--HHHHccCCHHHHHHHHHH
Q 010342 310 FCAPDAVTF--TTIIFGLLNVGRIQEALNLLYQVMP---QRGYSPGIVTYNAVL--RGLFRLRRVEEAKEVFNC 376 (512)
Q Consensus 310 ~~~~~~~~~--~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~l~--~~~~~~~~~~~a~~~~~~ 376 (512)
. .|-.... ..++......|+.++|...+.++.. ..+..++-.+-...+ ......|+...+.....+
T Consensus 612 ~-~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 612 P-QPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred c-chhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHhhHHHhcccCCHHHHHHHHHh
Confidence 1 2222222 3677788899999999988877431 111122211111222 223457787777776655
No 399
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=65.00 E-value=35 Score=23.70 Aligned_cols=18 Identities=28% Similarity=0.364 Sum_probs=8.5
Q ss_pred HhhcCCHHHHHHHHHhhc
Q 010342 325 LLNVGRIQEALNLLYQVM 342 (512)
Q Consensus 325 ~~~~~~~~~a~~~~~~~~ 342 (512)
....|++++|...+++.+
T Consensus 51 ~~~~G~~~~A~~~l~eAi 68 (94)
T PF12862_consen 51 HRRFGHYEEALQALEEAI 68 (94)
T ss_pred HHHhCCHHHHHHHHHHHH
Confidence 344455555555444443
No 400
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=64.19 E-value=6.6 Score=34.46 Aligned_cols=117 Identities=15% Similarity=-0.014 Sum_probs=66.9
Q ss_pred HccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCH-HhHHHHHHHHHhcCCHHHH
Q 010342 362 FRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDN-YVYAAMIKGLCRSGKIHEA 440 (512)
Q Consensus 362 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a 440 (512)
...|.++.|++.|...+... ++....|..-..++.+.+....|++=+...... .||. .-|-.-..+....|++++|
T Consensus 125 ln~G~~~~ai~~~t~ai~ln-p~~a~l~~kr~sv~lkl~kp~~airD~d~A~ei--n~Dsa~~ykfrg~A~rllg~~e~a 201 (377)
T KOG1308|consen 125 LNDGEFDTAIELFTSAIELN-PPLAILYAKRASVFLKLKKPNAAIRDCDFAIEI--NPDSAKGYKFRGYAERLLGNWEEA 201 (377)
T ss_pred hcCcchhhhhcccccccccC-CchhhhcccccceeeeccCCchhhhhhhhhhcc--CcccccccchhhHHHHHhhchHHH
Confidence 35677777777777777654 555556666667777777777777777766553 2332 2233333344456777777
Q ss_pred HHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010342 441 VHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMR 483 (512)
Q Consensus 441 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 483 (512)
...+....+.+..+....| +-...-..+..++-...+++.+
T Consensus 202 a~dl~~a~kld~dE~~~a~--lKeV~p~a~ki~e~~~k~er~~ 242 (377)
T KOG1308|consen 202 AHDLALACKLDYDEANSAT--LKEVFPNAGKIEEHRRKYERAR 242 (377)
T ss_pred HHHHHHHHhccccHHHHHH--HHHhccchhhhhhchhHHHHHH
Confidence 7777777776655443332 2223333444444444444433
No 401
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=63.72 E-value=40 Score=28.84 Aligned_cols=56 Identities=9% Similarity=0.059 Sum_probs=32.0
Q ss_pred HHHHHHccCChhHHHHHHHhcC----CCCC-CCcchhHHHHHHHHHhcCChhhHHHHHHHH
Q 010342 110 LVDSLCREGYVNEVFRIAEDMP----QGKS-VNEEFACGHMIDSLCRSGRNHGASRVVYVM 165 (512)
Q Consensus 110 l~~~~~~~g~~~~a~~~~~~~~----~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 165 (512)
+...|.+.|++++|.++|+.+. +.|. .+...+...+..++.+.|+.+....+.-++
T Consensus 184 ~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 184 MAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 6666666777777776666643 2232 233344455666666677776666554433
No 402
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=63.50 E-value=60 Score=24.21 Aligned_cols=43 Identities=16% Similarity=0.271 Sum_probs=25.0
Q ss_pred hHHHHHHHHHHcCCCCCc-chHHHHHHHHhccCchhHHHHHHHH
Q 010342 157 GASRVVYVMRKRGLTPSL-VSYNSIVHGLCKHGGCMRAYQLLEE 199 (512)
Q Consensus 157 ~a~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~ 199 (512)
++.++|..|...|+-... ..|......+...|++++|.++|+.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 666666666665544332 3455556666666777777666654
No 403
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=63.38 E-value=99 Score=26.72 Aligned_cols=109 Identities=12% Similarity=-0.012 Sum_probs=47.5
Q ss_pred ccCcHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCChhHHHHHH----HHHHhCCCCCChhhHHHHHHHHHhcCChh
Q 010342 6 GLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVF----DEMRHCGVLPNSLTYSVLVRGVLRTRDVE 81 (512)
Q Consensus 6 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~----~~m~~~~~~~~~~~~~~l~~~~~~~~~~~ 81 (512)
+++++++|++++..-. ..+.+.|+...|.++- +-..+.+++.|......++..+...+.-+
T Consensus 2 ~~kky~eAidLL~~Ga---------------~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~ 66 (260)
T PF04190_consen 2 KQKKYDEAIDLLYSGA---------------LILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEE 66 (260)
T ss_dssp HTT-HHHHHHHHHHHH---------------HHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-
T ss_pred ccccHHHHHHHHHHHH---------------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCc
Confidence 4567777777765422 1233344444333322 22223344455554455555444433222
Q ss_pred -hHHHHHHHHHHHhhhcCCCCcchHhHHHHHHHHHccCChhHHHHHHHh
Q 010342 82 -RANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAED 129 (512)
Q Consensus 82 -~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 129 (512)
.-..+..++++.-.......-++.....+...+.+.|++.+|..-|-.
T Consensus 67 p~r~~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~ 115 (260)
T PF04190_consen 67 PERKKFIKAAIKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLL 115 (260)
T ss_dssp TTHHHHHHHHHHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHT
T ss_pred chHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHh
Confidence 222333334433322223334455666677777777777777665543
No 404
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=61.65 E-value=1.6e+02 Score=28.60 Aligned_cols=88 Identities=7% Similarity=0.009 Sum_probs=48.6
Q ss_pred ccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHH
Q 010342 363 RLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVH 442 (512)
Q Consensus 363 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 442 (512)
..|+...|...+.........-.......|.....+.|..-.|-.++.+.+... .....++-.+.+++....++++|++
T Consensus 619 ~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~~ 697 (886)
T KOG4507|consen 619 AVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGALE 697 (886)
T ss_pred ecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHHH
Confidence 356666666666555432211122233445555555566666666666554433 2333455666667777777777777
Q ss_pred HHHHHHHCC
Q 010342 443 FLYELVDSG 451 (512)
Q Consensus 443 ~~~~~~~~~ 451 (512)
.|++..+..
T Consensus 698 ~~~~a~~~~ 706 (886)
T KOG4507|consen 698 AFRQALKLT 706 (886)
T ss_pred HHHHHHhcC
Confidence 777666653
No 405
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=61.26 E-value=1.1e+02 Score=26.73 Aligned_cols=19 Identities=16% Similarity=0.475 Sum_probs=13.2
Q ss_pred chHHHHHHHHhccCchhHH
Q 010342 175 VSYNSIVHGLCKHGGCMRA 193 (512)
Q Consensus 175 ~~~~~l~~~~~~~~~~~~a 193 (512)
.+|..|+.+++..|+.+-.
T Consensus 322 K~yaPLL~af~s~g~sEL~ 340 (412)
T KOG2297|consen 322 KQYAPLLAAFCSQGQSELE 340 (412)
T ss_pred HhhhHHHHHHhcCChHHHH
Confidence 3577777777777776654
No 406
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=61.17 E-value=1e+02 Score=26.05 Aligned_cols=119 Identities=14% Similarity=0.111 Sum_probs=69.2
Q ss_pred HHhhcCCHHHHHHHHHhhcccCCCCCChhh-HHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChH-hHHHHHHHHHhcCC
Q 010342 324 GLLNVGRIQEALNLLYQVMPQRGYSPGIVT-YNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADST-TYAIVIDGLCESNQ 401 (512)
Q Consensus 324 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~ 401 (512)
.|.....+..|+..|.+.+ .+.|+..+ |..-+.++.+..+++.+..--.+.++. .||.. ....+.........
T Consensus 19 k~f~~k~y~~ai~~y~raI---~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql--~~N~vk~h~flg~~~l~s~~ 93 (284)
T KOG4642|consen 19 KCFIPKRYDDAIDCYSRAI---CINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQL--DPNLVKAHYFLGQWLLQSKG 93 (284)
T ss_pred cccchhhhchHHHHHHHHH---hcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhc--ChHHHHHHHHHHHHHHhhcc
Confidence 3555666777777776644 34566533 445566677777777777766666653 45544 34445556666777
Q ss_pred HHHHHHHHHHhh----cCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 010342 402 LDEAKRFWDDIV----WPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYEL 447 (512)
Q Consensus 402 ~~~a~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 447 (512)
++.|+..+.+.. ...+++-......|..+--..=...+..++.++.
T Consensus 94 ~~eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~~ 143 (284)
T KOG4642|consen 94 YDEAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQEL 143 (284)
T ss_pred ccHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHHh
Confidence 888888777763 2333333445555555544444445555555443
No 407
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=60.01 E-value=56 Score=31.98 Aligned_cols=75 Identities=8% Similarity=0.137 Sum_probs=50.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhcCC--CCCCHHhHHHHHHHHHhcCCHH------HHHHHHHHHHHCCCCCChhhHHHH
Q 010342 391 IVIDGLCESNQLDEAKRFWDDIVWPS--NIHDNYVYAAMIKGLCRSGKIH------EAVHFLYELVDSGVTPNIVCYNVV 462 (512)
Q Consensus 391 ~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~------~a~~~~~~~~~~~~~p~~~~~~~l 462 (512)
+|+.+|...|++-++.++++...... .+.-...+|..++...+.|.++ .|.+.+++.. +.-|..||..+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHH
Confidence 78888888999989988888887543 1223446777888888888654 3444444433 44577777777
Q ss_pred HHHHHh
Q 010342 463 IDGACK 468 (512)
Q Consensus 463 ~~~~~~ 468 (512)
+.+-..
T Consensus 110 ~~~sln 115 (1117)
T COG5108 110 CQASLN 115 (1117)
T ss_pred HHhhcC
Confidence 666554
No 408
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=59.89 E-value=1.5e+02 Score=27.52 Aligned_cols=55 Identities=18% Similarity=0.127 Sum_probs=30.9
Q ss_pred HHhhcCCHHHHHHHHHhhcccCCCCCChh--hHHHHHHHHH--ccCCHHHHHHHHHHHHhC
Q 010342 324 GLLNVGRIQEALNLLYQVMPQRGYSPGIV--TYNAVLRGLF--RLRRVEEAKEVFNCMLGI 380 (512)
Q Consensus 324 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~~l~~~~~--~~~~~~~a~~~~~~~~~~ 380 (512)
.+.+.+++..|.+++.++... ++++.. .+..+..+|. ..-++++|.+.++.....
T Consensus 140 ~l~n~~~y~aA~~~l~~l~~r--l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 140 ELFNRYDYGAAARILEELLRR--LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHhcCCHHHHHHHHHHHHHh--CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 444677777777777775433 344433 3334444443 355666777777766553
No 409
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=58.76 E-value=1.1e+02 Score=32.45 Aligned_cols=30 Identities=17% Similarity=0.310 Sum_probs=22.3
Q ss_pred hhhHHHHHHHHhccC--CHHHHHHHHHHHHhC
Q 010342 209 EHTYKVLVEGLCGES--DLEKARKVLQFMLSK 238 (512)
Q Consensus 209 ~~~~~~l~~~~~~~g--~~~~a~~~~~~~~~~ 238 (512)
..-+..++.+|.+.+ +++.|+.+...+.+.
T Consensus 812 ~~~l~~IlTa~vkk~Pp~le~aL~~I~~l~~~ 843 (928)
T PF04762_consen 812 DKYLQPILTAYVKKSPPDLEEALQLIKELREE 843 (928)
T ss_pred hhhHHHHHHHHHhcCchhHHHHHHHHHHHHhc
Confidence 344567778888877 788888888888754
No 410
>PRK11619 lytic murein transglycosylase; Provisional
Probab=58.43 E-value=2.1e+02 Score=28.86 Aligned_cols=252 Identities=11% Similarity=0.032 Sum_probs=115.0
Q ss_pred HHHHHHHHccCChhHHHHHHHhcCCCCCCCcchhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHhcc
Q 010342 108 ANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKH 187 (512)
Q Consensus 108 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~ 187 (512)
..-+..+.+.++++...+.+..- +.+.........+....|+.++|......+-..|-. .+.....++..+.+.
T Consensus 103 ~~~l~~La~~~~w~~~~~~~~~~-----p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~~-~p~~cd~l~~~~~~~ 176 (644)
T PRK11619 103 SRFVNELARREDWRGLLAFSPEK-----PKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGKS-LPNACDKLFSVWQQS 176 (644)
T ss_pred HHHHHHHHHccCHHHHHHhcCCC-----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC-CChHHHHHHHHHHHc
Confidence 33455666777777776633221 234444455667777788877777666666555433 456667777776655
Q ss_pred CchhH--HHHHHHHHHhCCCCCchhhHHHHHHHHh------------ccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHH
Q 010342 188 GGCMR--AYQLLEEGIQFGYLPSEHTYKVLVEGLC------------GESDLEKARKVLQFMLSKKDVDRTRICNIYLRA 253 (512)
Q Consensus 188 ~~~~~--a~~~~~~~~~~~~~~~~~~~~~l~~~~~------------~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 253 (512)
|.... ..+-+..+...|- ...-..+..... -..+...+..++.. .+++...-...+.+
T Consensus 177 g~lt~~d~w~R~~~al~~~~---~~lA~~l~~~l~~~~~~~a~a~~al~~~p~~~~~~~~~-----~~~~~~~~~~~~~~ 248 (644)
T PRK11619 177 GKQDPLAYLERIRLAMKAGN---TGLVTYLAKQLPADYQTIASALIKLQNDPNTVETFART-----TGPTDFTRQMAAVA 248 (644)
T ss_pred CCCCHHHHHHHHHHHHHCCC---HHHHHHHHHhcChhHHHHHHHHHHHHHCHHHHHHHhhc-----cCCChhhHHHHHHH
Confidence 54332 2222222222221 111111111110 00111111111111 11111111111111
Q ss_pred H--HccCChhhHHHHHHHHHhcC-CCCCh--hhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhc
Q 010342 254 L--CLIKNPTELLNVLVFMLQTQ-CQPDV--ITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNV 328 (512)
Q Consensus 254 ~--~~~~~~~~a~~~~~~~~~~~-~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 328 (512)
+ ....+.+.|...+....... ..+.. ..+..+.......+...++...++..... ..+......-+......
T Consensus 249 l~Rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~---~~~~~~~e~r~r~Al~~ 325 (644)
T PRK11619 249 FASVARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMR---SQSTSLLERRVRMALGT 325 (644)
T ss_pred HHHHHHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccc---cCCcHHHHHHHHHHHHc
Confidence 1 12445566777766654332 21111 12223332223322244555555544322 22444445555555677
Q ss_pred CCHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHH
Q 010342 329 GRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCML 378 (512)
Q Consensus 329 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 378 (512)
++++.+...+.. |... ..-...-.--+.+++...|+.++|...|+.+.
T Consensus 326 ~dw~~~~~~i~~-L~~~-~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a 373 (644)
T PRK11619 326 GDRRGLNTWLAR-LPME-AKEKDEWRYWQADLLLEQGRKAEAEEILRQLM 373 (644)
T ss_pred cCHHHHHHHHHh-cCHh-hccCHhhHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 777777776665 3221 12223333445666566777777777777763
No 411
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=57.92 E-value=1.2e+02 Score=25.72 Aligned_cols=86 Identities=13% Similarity=0.045 Sum_probs=47.4
Q ss_pred ccccCcHHHHHHHHHHHHhCCCCCCh-HhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhh-HHHHHHHHHhcCChh
Q 010342 4 LCGLSRVGEAHKLFFDMKSRGHVPNV-VSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLT-YSVLVRGVLRTRDVE 81 (512)
Q Consensus 4 ~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~-~~~l~~~~~~~~~~~ 81 (512)
|....+++.|+..+.+.+.. .|++ .-|+.=+..+.+..+++.+..--.+.++. .||..- ...+..+......++
T Consensus 20 ~f~~k~y~~ai~~y~raI~~--nP~~~~Y~tnralchlk~~~~~~v~~dcrralql--~~N~vk~h~flg~~~l~s~~~~ 95 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAICI--NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQL--DPNLVKAHYFLGQWLLQSKGYD 95 (284)
T ss_pred ccchhhhchHHHHHHHHHhc--CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhc--ChHHHHHHHHHHHHHHhhcccc
Confidence 44445666777766666654 3443 33455555566666666666555555543 344443 233344455566666
Q ss_pred hHHHHHHHHHHH
Q 010342 82 RANVLMFKLWER 93 (512)
Q Consensus 82 ~a~~~~~~~~~~ 93 (512)
.|+..+.+.+..
T Consensus 96 eaI~~Lqra~sl 107 (284)
T KOG4642|consen 96 EAIKVLQRAYSL 107 (284)
T ss_pred HHHHHHHHHHHH
Confidence 666666555443
No 412
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=57.76 E-value=21 Score=31.02 Aligned_cols=42 Identities=24% Similarity=0.415 Sum_probs=33.2
Q ss_pred CCChHh-HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhH
Q 010342 26 VPNVVS-YTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTY 67 (512)
Q Consensus 26 ~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~ 67 (512)
.|+..+ |+..|....+.|++++|+.++++..+.|+.--..++
T Consensus 253 ~~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tF 295 (303)
T PRK10564 253 LNDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTF 295 (303)
T ss_pred CchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHH
Confidence 355554 679999999999999999999999998865433443
No 413
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=57.13 E-value=71 Score=23.02 Aligned_cols=27 Identities=22% Similarity=0.337 Sum_probs=14.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 010342 423 VYAAMIKGLCRSGKIHEAVHFLYELVD 449 (512)
Q Consensus 423 ~~~~l~~~~~~~g~~~~a~~~~~~~~~ 449 (512)
-|..|+..|...|..++|.+++.++.+
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 345555555555555555555555444
No 414
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=56.95 E-value=28 Score=18.38 Aligned_cols=23 Identities=17% Similarity=0.317 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHCCCCCChHHHHH
Q 010342 472 KREAYQILREMRKNGLNPDAVTWRI 496 (512)
Q Consensus 472 ~~~a~~~~~~m~~~~~~p~~~~~~~ 496 (512)
++.|..+|++... +.|+..+|..
T Consensus 3 ~dRAR~IyeR~v~--~hp~~k~Wik 25 (32)
T PF02184_consen 3 FDRARSIYERFVL--VHPEVKNWIK 25 (32)
T ss_pred HHHHHHHHHHHHH--hCCCchHHHH
Confidence 4556666666555 3455555543
No 415
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=56.37 E-value=82 Score=23.49 Aligned_cols=43 Identities=14% Similarity=0.288 Sum_probs=25.4
Q ss_pred HHHHHHHHHHhCCCCCC-hHhHHHHHHHHHhcCCHHHHHHHHHH
Q 010342 369 EAKEVFNCMLGIGVVAD-STTYAIVIDGLCESNQLDEAKRFWDD 411 (512)
Q Consensus 369 ~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~ 411 (512)
.+..+|..|...|+--. +..|......+...|++++|.++++.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 66666666666554333 33455566666666677776666654
No 416
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=56.20 E-value=26 Score=17.71 Aligned_cols=15 Identities=13% Similarity=0.277 Sum_probs=8.2
Q ss_pred cHHHHHHHHHHHHhC
Q 010342 9 RVGEAHKLFFDMKSR 23 (512)
Q Consensus 9 ~~~~A~~~~~~~~~~ 23 (512)
+.+.|..+|++++..
T Consensus 2 ~~~~~r~i~e~~l~~ 16 (33)
T smart00386 2 DIERARKIYERALEK 16 (33)
T ss_pred cHHHHHHHHHHHHHH
Confidence 445555555555554
No 417
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=56.13 E-value=2.7e+02 Score=29.48 Aligned_cols=93 Identities=12% Similarity=0.122 Sum_probs=57.2
Q ss_pred ccccccCcHHHHHHHHHHHHhCCCCCChHhHHH-------HHHHHHhcCC---hhHHHHHHHHHHhCCCCCChhhHHHHH
Q 010342 2 DQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTT-------LIHGYCRTGE---MDVAYKVFDEMRHCGVLPNSLTYSVLV 71 (512)
Q Consensus 2 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-------l~~~~~~~~~---~~~a~~~~~~m~~~~~~~~~~~~~~l~ 71 (512)
++|+....++.|+..++++... ++--...|.+ ++.-....|+ +++|+.-|+.+... +--+--|..=.
T Consensus 483 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 559 (932)
T PRK13184 483 DAFLAEKLYDQALIFYRRIRES-FPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHGG--VGAPLEYLGKA 559 (932)
T ss_pred HHHHhhHHHHHHHHHHHHHhhc-CCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcCC--CCCchHHHhHH
Confidence 4667778899999999988876 3222333332 2222333444 66788888877652 11222343334
Q ss_pred HHHHhcCChhhHHHHHHHHHHHhhhc
Q 010342 72 RGVLRTRDVERANVLMFKLWERMKEE 97 (512)
Q Consensus 72 ~~~~~~~~~~~a~~~~~~~~~~~~~~ 97 (512)
-+|-+.|++++-.+.+.-.+++.+..
T Consensus 560 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 585 (932)
T PRK13184 560 LVYQRLGEYNEEIKSLLLALKRYSQH 585 (932)
T ss_pred HHHHHhhhHHHHHHHHHHHHHhcCCC
Confidence 45677888888888777777776554
No 418
>PRK10941 hypothetical protein; Provisional
Probab=55.99 E-value=1.4e+02 Score=26.01 Aligned_cols=78 Identities=10% Similarity=-0.081 Sum_probs=46.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCChHHHHHHHHhhc
Q 010342 424 YAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNG-LNPDAVTWRILDKLHG 502 (512)
Q Consensus 424 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~-~~p~~~~~~~l~~~~~ 502 (512)
.+.+-.+|.+.++++.|.++.+.+.... +.++.-+.--.-.|.+.|.+..|..=++...+.. -.|+.......+....
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~-P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~~l~ 262 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFD-PEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIHSIE 262 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHHHHh
Confidence 4445566777777777777777777653 2245555556666777777777777777765432 2334444444444443
No 419
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=55.84 E-value=71 Score=27.33 Aligned_cols=59 Identities=12% Similarity=0.017 Sum_probs=44.9
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHH----cC-CCCCcchHHHHHHHHhccCchhHHHHHHHHHH
Q 010342 143 GHMIDSLCRSGRNHGASRVVYVMRK----RG-LTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGI 201 (512)
Q Consensus 143 ~~l~~~~~~~~~~~~a~~~~~~~~~----~g-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 201 (512)
..+...|.+.|++++|.++|+.+.. .| ..+...+...+..++...|+.+..+.+.-++.
T Consensus 182 ~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLl 245 (247)
T PF11817_consen 182 LEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLELL 245 (247)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 3477889999999999999998753 33 23455677778888889999998887765553
No 420
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=55.43 E-value=1.2e+02 Score=25.23 Aligned_cols=64 Identities=13% Similarity=0.062 Sum_probs=37.0
Q ss_pred hHHHHHHHHHhcCCHH-------HHHHHHHHHHHCCCCC----C-hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 010342 423 VYAAMIKGLCRSGKIH-------EAVHFLYELVDSGVTP----N-IVCYNVVIDGACKLSMKREAYQILREMRKNG 486 (512)
Q Consensus 423 ~~~~l~~~~~~~g~~~-------~a~~~~~~~~~~~~~p----~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 486 (512)
++-.+.+.|...|+.+ .|.+.|.+..+..-.| + ....-.+.....+.|++++|.+.|.++...+
T Consensus 120 l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 120 LCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 4555566666666633 4555555555432221 1 2233345566677888888888888887544
No 421
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=55.22 E-value=36 Score=31.67 Aligned_cols=106 Identities=11% Similarity=0.006 Sum_probs=66.6
Q ss_pred HHHHHccCCHHHHHHHHHHHHhCCCCCChHh-HHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCC
Q 010342 358 LRGLFRLRRVEEAKEVFNCMLGIGVVADSTT-YAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGK 436 (512)
Q Consensus 358 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 436 (512)
..-+...+.++.|..++.+..+. .||-.. |..-..++.+.+++..|..=...+++.. +.....|-.=..++.+.+.
T Consensus 11 an~~l~~~~fd~avdlysKaI~l--dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~d-P~~~K~Y~rrg~a~m~l~~ 87 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIEL--DPNCAIYFANRALAHLKVESFGGALHDALKAIELD-PTYIKAYVRRGTAVMALGE 87 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHhc--CCcceeeechhhhhheeechhhhHHHHHHhhhhcC-chhhheeeeccHHHHhHHH
Confidence 34455677888888888888875 454443 3333467788888888887777776654 2222233333445556666
Q ss_pred HHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh
Q 010342 437 IHEAVHFLYELVDSGVTPNIVCYNVVIDGACK 468 (512)
Q Consensus 437 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 468 (512)
+.+|...|+..... .|+..-....+.-|-+
T Consensus 88 ~~~A~~~l~~~~~l--~Pnd~~~~r~~~Ec~~ 117 (476)
T KOG0376|consen 88 FKKALLDLEKVKKL--APNDPDATRKIDECNK 117 (476)
T ss_pred HHHHHHHHHHhhhc--CcCcHHHHHHHHHHHH
Confidence 77777777766653 6776666665555543
No 422
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=54.88 E-value=3e+02 Score=29.57 Aligned_cols=126 Identities=10% Similarity=0.062 Sum_probs=73.4
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHHhhhcCCCCcchHhHHHHHHHHHccCChhHHHHHHHhcCCCCCCCcchhHHHHH
Q 010342 67 YSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMI 146 (512)
Q Consensus 67 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 146 (512)
|..+++.+-+.+-.+.+.++.-..++..+.+. +.-..+++.+.+-+...|.+.+|...+-...... ........++
T Consensus 986 Ylkv~rlle~hn~~E~vcQlA~~AIe~l~dd~--ps~a~~~t~vFnhhldlgh~~qAy~ai~~npdse--rrrdcLRqlv 1061 (1480)
T KOG4521|consen 986 YLKVVRLLEEHNHAEEVCQLAVKAIENLPDDN--PSVALISTTVFNHHLDLGHWFQAYKAILRNPDSE--RRRDCLRQLV 1061 (1480)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCCCcc--hhHHHHHHHHHHhhhchhhHHHHHHHHHcCCcHH--HHHHHHHHHH
Confidence 56677777788888888888777777766543 2334456777788888888888887766654321 1223344556
Q ss_pred HHHHhcCChhhH------------HH-HHHHHHHcCCCCCcchHHHHHHHHhccCchhHHHHH
Q 010342 147 DSLCRSGRNHGA------------SR-VVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQL 196 (512)
Q Consensus 147 ~~~~~~~~~~~a------------~~-~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~ 196 (512)
-.++.+|.++.- .. +++..-+.........|+.|-.-+...+++.+|-.+
T Consensus 1062 ivLfecg~l~~L~~fpfigl~~eve~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~Rkaatv 1124 (1480)
T KOG4521|consen 1062 IVLFECGELEALATFPFIGLEQEVEDFLRESAARSSPSMKKNYYELLYAFHVARHNFRKAATV 1124 (1480)
T ss_pred HHHHhccchHHHhhCCccchHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhcchhHHHHH
Confidence 666666665432 22 111111121222334555555555667777766543
No 423
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=54.48 E-value=1.1e+02 Score=24.41 Aligned_cols=62 Identities=13% Similarity=0.013 Sum_probs=45.0
Q ss_pred HHhCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhh
Q 010342 20 MKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVER 82 (512)
Q Consensus 20 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~ 82 (512)
+.+.|.+++.. -..++..+...+..-.|.++++.+.+.+...+..|-...+..+...|-+.+
T Consensus 17 L~~~GlR~T~q-R~~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv~~ 78 (169)
T PRK11639 17 CAQRNVRLTPQ-RLEVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFVHK 78 (169)
T ss_pred HHHcCCCCCHH-HHHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCEEE
Confidence 45667775544 456777777777788999999999998877777776666777777665543
No 424
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=54.24 E-value=1.6e+02 Score=26.36 Aligned_cols=54 Identities=22% Similarity=0.216 Sum_probs=25.3
Q ss_pred HHccCCHHHHHHHHHHHHhC---CCCCChHhH--HHHHHHHHhcCCHHHHHHHHHHhhc
Q 010342 361 LFRLRRVEEAKEVFNCMLGI---GVVADSTTY--AIVIDGLCESNQLDEAKRFWDDIVW 414 (512)
Q Consensus 361 ~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~--~~l~~~~~~~g~~~~a~~~~~~~~~ 414 (512)
.-+.++.++|.++++++.+. --.|+...| ..+.+++...|+..++.+.+.+..+
T Consensus 85 ~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~ 143 (380)
T KOG2908|consen 85 SEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKS 143 (380)
T ss_pred HHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 33444566666666555442 112333332 2333444455555555555555443
No 425
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=54.24 E-value=70 Score=22.07 Aligned_cols=31 Identities=26% Similarity=0.301 Sum_probs=15.1
Q ss_pred CcHHHHHHHHHHHhhcCCHHHHHHHHHhhcc
Q 010342 313 PDAVTFTTIIFGLLNVGRIQEALNLLYQVMP 343 (512)
Q Consensus 313 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 343 (512)
.|....-.+...+...|++++|++.+-++++
T Consensus 20 ~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~ 50 (90)
T PF14561_consen 20 DDLDARYALADALLAAGDYEEALDQLLELVR 50 (90)
T ss_dssp T-HHHHHHHHHHHHHTT-HHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3444444555555555555555555555443
No 426
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=53.67 E-value=33 Score=29.87 Aligned_cols=30 Identities=27% Similarity=0.277 Sum_probs=14.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 010342 460 NVVIDGACKLSMKREAYQILREMRKNGLNP 489 (512)
Q Consensus 460 ~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p 489 (512)
+..|....+.||+++|++++++..+.|+.-
T Consensus 261 ~~aI~~AVk~gDi~KAL~LldEAe~LG~~~ 290 (303)
T PRK10564 261 NQAIKQAVKKGDVDKALKLLDEAERLGSTS 290 (303)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCch
Confidence 344455555555555555555555544433
No 427
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=53.55 E-value=1e+02 Score=23.70 Aligned_cols=47 Identities=13% Similarity=0.193 Sum_probs=22.1
Q ss_pred hhHHHHHHHHHhcCC-HHHHHHHHHHHHHCCCCCChHHHHHHHHhhcc
Q 010342 457 VCYNVVIDGACKLSM-KREAYQILREMRKNGLNPDAVTWRILDKLHGN 503 (512)
Q Consensus 457 ~~~~~l~~~~~~~g~-~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 503 (512)
..|.+++.+.....- .--+..+++-|.+.+.+++..-|..+++++.+
T Consensus 80 ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li~~~l~ 127 (145)
T PF13762_consen 80 SSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLIKAALR 127 (145)
T ss_pred chHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Confidence 345555555543333 22344445555554555555555555544433
No 428
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=52.89 E-value=1.9e+02 Score=26.69 Aligned_cols=61 Identities=5% Similarity=-0.115 Sum_probs=33.2
Q ss_pred hHHHHHHHHhccCchhHHHHHHHHHHhCC--CCCchhhHHHHHHHHhccCCHHHHHHHHHHHH
Q 010342 176 SYNSIVHGLCKHGGCMRAYQLLEEGIQFG--YLPSEHTYKVLVEGLCGESDLEKARKVLQFML 236 (512)
Q Consensus 176 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 236 (512)
.+.-+...|...|+.+.|++.|.+.+..- .......|..+|..-.-.|+|.....+..+..
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~ 214 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAE 214 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHH
Confidence 44555566666666666666666644321 12233445555555555666666555555554
No 429
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=51.74 E-value=2e+02 Score=26.57 Aligned_cols=166 Identities=11% Similarity=0.018 Sum_probs=86.8
Q ss_pred hhHHHHHHHHhccCCHHHHHHHHHHHHhCC--CCCCcccHHHHHHHHHccCChhhHHHHHHHHHhc---------CCCCC
Q 010342 210 HTYKVLVEGLCGESDLEKARKVLQFMLSKK--DVDRTRICNIYLRALCLIKNPTELLNVLVFMLQT---------QCQPD 278 (512)
Q Consensus 210 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---------~~~~~ 278 (512)
..+.-+...|...|+++.|.+.|.+..+-. .......+..++..-.-.++|..+.....+.... .+++.
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~k 230 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAK 230 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcc
Confidence 466778888999999999999998864321 1112345666677777788888777776666544 12333
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHhhCC-----CCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhhcccCCCCCChhh
Q 010342 279 VITLNTVINGFCKMGRIEEALKVLNDMVAGK-----FCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVT 353 (512)
Q Consensus 279 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 353 (512)
...+..+.....+ ++..|.+.|-...... .+.|...+....+.+++--++-+--+.+.....-..=....+..
T Consensus 231 l~C~agLa~L~lk--kyk~aa~~fL~~~~~~~d~~~ivtpsdv~iYggLcALAtfdr~~Lk~~vi~n~~Fk~flel~Pql 308 (466)
T KOG0686|consen 231 LKCAAGLANLLLK--KYKSAAKYFLLAEFDHCDYPEIVTPSDVAIYGGLCALATFDRQDLKLNVIKNESFKLFLELEPQL 308 (466)
T ss_pred hHHHHHHHHHHHH--HHHHHHHHHHhCCCCccCccceecchhhHHHHhhHhhccCCHHHHHHHHHcchhhhhHHhcChHH
Confidence 4444444444443 6666666554433221 11233333333334444333322222221110000000123334
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHh
Q 010342 354 YNAVLRGLFRLRRVEEAKEVFNCMLG 379 (512)
Q Consensus 354 ~~~l~~~~~~~~~~~~a~~~~~~~~~ 379 (512)
...+...| .+++...+++++++..
T Consensus 309 r~il~~fy--~sky~~cl~~L~~~k~ 332 (466)
T KOG0686|consen 309 REILFKFY--SSKYASCLELLREIKP 332 (466)
T ss_pred HHHHHHHh--hhhHHHHHHHHHHhcc
Confidence 44444444 4577788888877754
No 430
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=51.61 E-value=88 Score=22.44 Aligned_cols=79 Identities=19% Similarity=0.182 Sum_probs=41.3
Q ss_pred CHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHccCCHHHHHHH
Q 010342 294 RIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEV 373 (512)
Q Consensus 294 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 373 (512)
..++|..+.+-+...+ ......--+-+..+.+.|++++|+. .- .....||...|.+|- -.+.|-.+++...
T Consensus 21 cH~EA~tIa~wL~~~~--~~~E~v~lIr~~sLmNrG~Yq~ALl--~~---~~~~~pdL~p~~AL~--a~klGL~~~~e~~ 91 (116)
T PF09477_consen 21 CHQEANTIADWLEQEG--EMEEVVALIRLSSLMNRGDYQEALL--LP---QCHCYPDLEPWAALC--AWKLGLASALESR 91 (116)
T ss_dssp -HHHHHHHHHHHHHTT--TTHHHHHHHHHHHHHHTT-HHHHHH--HH---TTS--GGGHHHHHHH--HHHCT-HHHHHHH
T ss_pred HHHHHHHHHHHHHhCC--cHHHHHHHHHHHHHHhhHHHHHHHH--hc---ccCCCccHHHHHHHH--HHhhccHHHHHHH
Confidence 4566666666666544 2223333333455667777777722 11 333356666665543 3467777777777
Q ss_pred HHHHHhCC
Q 010342 374 FNCMLGIG 381 (512)
Q Consensus 374 ~~~~~~~~ 381 (512)
+.++..+|
T Consensus 92 l~rla~~g 99 (116)
T PF09477_consen 92 LTRLASSG 99 (116)
T ss_dssp HHHHCT-S
T ss_pred HHHHHhCC
Confidence 77776655
No 431
>PRK09857 putative transposase; Provisional
Probab=51.58 E-value=1.5e+02 Score=26.18 Aligned_cols=30 Identities=13% Similarity=0.176 Sum_probs=16.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 010342 461 VVIDGACKLSMKREAYQILREMRKNGLNPD 490 (512)
Q Consensus 461 ~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~ 490 (512)
++..-+.+.|.-+++.++.++|...|+.++
T Consensus 245 TiAEqL~qeG~qe~~~~ia~~ml~~g~~~~ 274 (292)
T PRK09857 245 TIAERLRQEGEQSKALHIAKIMLESGVPLA 274 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 344444444444556666666666665544
No 432
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=50.82 E-value=1.1e+02 Score=26.81 Aligned_cols=44 Identities=14% Similarity=0.264 Sum_probs=29.8
Q ss_pred HHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhc
Q 010342 371 KEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVW 414 (512)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 414 (512)
.++|+.+.+.++.|.-..+..+.-.+.+.=.+..+..+|+.+..
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~s 306 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLS 306 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhc
Confidence 45666666777777777776666666666667777777777653
No 433
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=50.49 E-value=1.3e+02 Score=26.86 Aligned_cols=77 Identities=10% Similarity=0.115 Sum_probs=39.7
Q ss_pred ccCChhHHHHHHHhcCCC---CCCCcchhH--HHHHHHHHhcCChhhHHHHHHHHHH-----cCCCCCcc-hHHHHHHHH
Q 010342 116 REGYVNEVFRIAEDMPQG---KSVNEEFAC--GHMIDSLCRSGRNHGASRVVYVMRK-----RGLTPSLV-SYNSIVHGL 184 (512)
Q Consensus 116 ~~g~~~~a~~~~~~~~~~---~~~~~~~~~--~~l~~~~~~~~~~~~a~~~~~~~~~-----~g~~p~~~-~~~~l~~~~ 184 (512)
+.++.++|++.++++... ...|+...| ....+.+...|+..++.+.+++.+. .|++|++. .|..+-.-|
T Consensus 87 ~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~~fY~lssqY 166 (380)
T KOG2908|consen 87 QISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHSSFYSLSSQY 166 (380)
T ss_pred HhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhhhHHHHHHHH
Confidence 334555555555554332 122344333 2344555666777777777776665 45666443 344444444
Q ss_pred hc-cCchhH
Q 010342 185 CK-HGGCMR 192 (512)
Q Consensus 185 ~~-~~~~~~ 192 (512)
.+ .|++..
T Consensus 167 yk~~~d~a~ 175 (380)
T KOG2908|consen 167 YKKIGDFAS 175 (380)
T ss_pred HHHHHhHHH
Confidence 33 455444
No 434
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=50.46 E-value=98 Score=23.79 Aligned_cols=46 Identities=22% Similarity=0.109 Sum_probs=20.8
Q ss_pred HHHHHcCCCCCcchHHHHHHHHhccCchhHHHHHHHHHHhCCCCCch
Q 010342 163 YVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSE 209 (512)
Q Consensus 163 ~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 209 (512)
..+++.|++++.. -..++..+...++.-.|.++++++.+.+...+.
T Consensus 10 ~~lk~~glr~T~q-R~~vl~~L~~~~~~~sAeei~~~l~~~~p~isl 55 (145)
T COG0735 10 ERLKEAGLRLTPQ-RLAVLELLLEADGHLSAEELYEELREEGPGISL 55 (145)
T ss_pred HHHHHcCCCcCHH-HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCH
Confidence 3344445443322 223444444444445555555555554433333
No 435
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=50.01 E-value=3.1e+02 Score=28.33 Aligned_cols=275 Identities=12% Similarity=0.085 Sum_probs=0.0
Q ss_pred ccccccCcHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHH------
Q 010342 2 DQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVL------ 75 (512)
Q Consensus 2 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~------ 75 (512)
+.+++.+++..|.+++-++.+. |..+.--+....+.+ ++..|-.=+-..++|...+-..++..+.
T Consensus 397 df~f~~k~y~~AA~~yA~t~~~--------FEEVaLKFl~~~~~~-~L~~~L~KKL~~lt~~dk~q~~~Lv~WLlel~L~ 467 (911)
T KOG2034|consen 397 DFLFQDKEYLRAAEIYAETLSS--------FEEVALKFLEINQER-ALRTFLDKKLDRLTPEDKTQRDALVTWLLELYLE 467 (911)
T ss_pred HHHHhhhHHHHHHHHHHHhhhh--------HHHHHHHHHhcCCHH-HHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHH
Q ss_pred hcCChh--------hHHHHHHHHHHHhhhcCCCCcchHhHHHHHHHHHccCChhHHHHHHHhcCCCCCCCcchhHHHHHH
Q 010342 76 RTRDVE--------RANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMID 147 (512)
Q Consensus 76 ~~~~~~--------~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 147 (512)
+.++.+ .-...+..+.+.+........+.....+..+.+...|+.+++..+-.-+. .|..++.
T Consensus 468 ~Ln~l~~~de~~~en~~~~~~~~~re~~~~~~~~~~~~nretv~~l~~~~~~~e~ll~fA~l~~---------d~~~vv~ 538 (911)
T KOG2034|consen 468 QLNDLDSTDEEALENWRLEYDEVQREFSKFLVLHKDELNRETVYQLLASHGRQEELLQFANLIK---------DYEFVVS 538 (911)
T ss_pred HHhcccccChhHHHHHHHHHHHHHHHHHHHHHhhHHhhhHHHHHHHHHHccCHHHHHHHHHHHH---------HHHHHHH
Q ss_pred HHHhcCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHhccCchhHHHHHHHHHHhCCCCCchhhHHHHHHHHhcc---CC
Q 010342 148 SLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGE---SD 224 (512)
Q Consensus 148 ~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~ 224 (512)
.+...+.+++|++++..-. +...+-...-.+...- ..+......+.+-..+......++..+.+. -.
T Consensus 539 ~~~q~e~yeeaLevL~~~~------~~el~yk~ap~Li~~~----p~~tV~~wm~~~d~~~~~li~~~L~~~~~~~~~~~ 608 (911)
T KOG2034|consen 539 YWIQQENYEEALEVLLNQR------NPELFYKYAPELITHS----PKETVSAWMAQKDLDPNRLIPPILSYFSNWHSEYE 608 (911)
T ss_pred HHHHHHHHHHHHHHHHhcc------chhhHHHhhhHHHhcC----cHHHHHHHHHccccCchhhhHHHHHHHhcCCcccc
Q ss_pred HHHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 010342 225 LEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLND 304 (512)
Q Consensus 225 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 304 (512)
...+...++.....-...++..++.++..|.+..+-+....+-......+. ...-....++.|.+.+....+..++..
T Consensus 609 ~~~~i~yl~f~~~~l~~~~~~ihn~ll~lya~~~~~~ll~~le~~~~~~~~--~~YDl~~alRlc~~~~~~ra~V~l~~~ 686 (911)
T KOG2034|consen 609 ENQAIRYLEFCIEVLGMTNPAIHNSLLHLYAKHERDDLLLYLEIIKFMKSR--VHYDLDYALRLCLKFKKTRACVFLLCM 686 (911)
T ss_pred HHHHHHHHHHHHHhccCcCHHHHHHHHHHhhcCCccchHHHHHHHhhcccc--ceecHHHHHHHHHHhCccceeeeHHHH
Q ss_pred Hh
Q 010342 305 MV 306 (512)
Q Consensus 305 ~~ 306 (512)
+.
T Consensus 687 l~ 688 (911)
T KOG2034|consen 687 LN 688 (911)
T ss_pred HH
No 436
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=49.10 E-value=1.1e+02 Score=27.11 Aligned_cols=19 Identities=26% Similarity=0.641 Sum_probs=9.1
Q ss_pred hhcCCHHHHHHHHHhhccc
Q 010342 326 LNVGRIQEALNLLYQVMPQ 344 (512)
Q Consensus 326 ~~~~~~~~a~~~~~~~~~~ 344 (512)
.+.|+..+|.+.+++.+++
T Consensus 286 RklGrlrEA~K~~RDL~ke 304 (556)
T KOG3807|consen 286 RKLGRLREAVKIMRDLMKE 304 (556)
T ss_pred HHhhhHHHHHHHHHHHhhh
Confidence 3445555555555554433
No 437
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=49.06 E-value=2.9e+02 Score=27.73 Aligned_cols=29 Identities=17% Similarity=0.202 Sum_probs=15.2
Q ss_pred hhHHHHHHHHHhc---CCHHHHHHHHHHHhhC
Q 010342 280 ITLNTVINGFCKM---GRIEEALKVLNDMVAG 308 (512)
Q Consensus 280 ~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~ 308 (512)
.-+..||..|.+. .++..|.+.|--+...
T Consensus 325 ln~arLI~~Y~~~F~~td~~~Al~Y~~li~~~ 356 (613)
T PF04097_consen 325 LNFARLIGQYTRSFEITDPREALQYLYLICLF 356 (613)
T ss_dssp --HHHHHHHHHHTTTTT-HHHHHHHHHGGGGS
T ss_pred cCHHHHHHHHHHHHhccCHHHHHHHHHHHHHc
Confidence 3455566666543 4566666666655543
No 438
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=48.58 E-value=1.5e+02 Score=24.11 Aligned_cols=26 Identities=15% Similarity=0.170 Sum_probs=19.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhC
Q 010342 283 NTVINGFCKMGRIEEALKVLNDMVAG 308 (512)
Q Consensus 283 ~~l~~~~~~~~~~~~a~~~~~~~~~~ 308 (512)
-+++-.|.+..++.+..++++.+.+.
T Consensus 136 iS~m~~Yhk~~qW~KGrkvLd~l~el 161 (233)
T PF14669_consen 136 ISLMYSYHKTLQWSKGRKVLDKLHEL 161 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566778888888888888887653
No 439
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=47.56 E-value=1e+02 Score=22.16 Aligned_cols=27 Identities=11% Similarity=0.072 Sum_probs=15.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHhhc
Q 010342 388 TYAIVIDGLCESNQLDEAKRFWDDIVW 414 (512)
Q Consensus 388 ~~~~l~~~~~~~g~~~~a~~~~~~~~~ 414 (512)
-|..|+..|...|..++|.+++.+...
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 355555555555666666665555543
No 440
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=47.34 E-value=2.8e+02 Score=28.70 Aligned_cols=130 Identities=15% Similarity=0.088 Sum_probs=77.4
Q ss_pred ccccCcHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhhH
Q 010342 4 LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERA 83 (512)
Q Consensus 4 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a 83 (512)
.++.|+.+.|++.-..+- +..+|..|+....++|+.+-|+..|++.+. |..|.-.|.-.|+.++-
T Consensus 653 aLe~gnle~ale~akkld------d~d~w~rLge~Al~qgn~~IaEm~yQ~~kn---------fekLsfLYliTgn~eKL 717 (1202)
T KOG0292|consen 653 ALECGNLEVALEAAKKLD------DKDVWERLGEEALRQGNHQIAEMCYQRTKN---------FEKLSFLYLITGNLEKL 717 (1202)
T ss_pred ehhcCCHHHHHHHHHhcC------cHHHHHHHHHHHHHhcchHHHHHHHHHhhh---------hhheeEEEEEeCCHHHH
Confidence 456788888876655433 567889999999999999988888887765 33444456667777776
Q ss_pred HHHHHHHHHHhhhcCCCCcchHhHHHHHHHHHccCChhHHHHHHHhcCCCCCCCcchhHHHHHHHHHhcCChhhHHHHHH
Q 010342 84 NVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVY 163 (512)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 163 (512)
.++...+-. +-+. ........-.|++++-.++++..-... .+|. .-...|.-+.|.++.+
T Consensus 718 ~Km~~iae~--------r~D~---~~~~qnalYl~dv~ervkIl~n~g~~~-----layl----ta~~~G~~~~ae~l~e 777 (1202)
T KOG0292|consen 718 SKMMKIAEI--------RNDA---TGQFQNALYLGDVKERVKILENGGQLP-----LAYL----TAAAHGLEDQAEKLGE 777 (1202)
T ss_pred HHHHHHHHh--------hhhh---HHHHHHHHHhccHHHHHHHHHhcCccc-----HHHH----HHhhcCcHHHHHHHHH
Confidence 554322211 1110 112222334577777777776654321 1221 1234577777877777
Q ss_pred HHHHc
Q 010342 164 VMRKR 168 (512)
Q Consensus 164 ~~~~~ 168 (512)
+....
T Consensus 778 e~~~~ 782 (1202)
T KOG0292|consen 778 ELEKQ 782 (1202)
T ss_pred hhccc
Confidence 76653
No 441
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=46.80 E-value=1.6e+02 Score=23.95 Aligned_cols=25 Identities=24% Similarity=0.185 Sum_probs=17.9
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHh
Q 010342 213 KVLVEGLCGESDLEKARKVLQFMLS 237 (512)
Q Consensus 213 ~~l~~~~~~~g~~~~a~~~~~~~~~ 237 (512)
.+++..|.+..++.+..++++.+.+
T Consensus 136 iS~m~~Yhk~~qW~KGrkvLd~l~e 160 (233)
T PF14669_consen 136 ISLMYSYHKTLQWSKGRKVLDKLHE 160 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456667777788888888877755
No 442
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=46.63 E-value=2.2e+02 Score=25.66 Aligned_cols=44 Identities=11% Similarity=0.058 Sum_probs=24.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHhh
Q 010342 458 CYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLH 501 (512)
Q Consensus 458 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~ 501 (512)
.|.++++.....|.+++++.+|+++...|..|=...-..+++.+
T Consensus 142 YWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~diL 185 (353)
T PF15297_consen 142 YWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDIL 185 (353)
T ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Confidence 35555555556666666666666666666655544444444433
No 443
>PHA02875 ankyrin repeat protein; Provisional
Probab=46.52 E-value=2.5e+02 Score=26.27 Aligned_cols=78 Identities=14% Similarity=0.090 Sum_probs=38.4
Q ss_pred HHHccCChhHHHHHHHhcCCCCCCCcchh--HHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCcc--hHHHHHHHHhccC
Q 010342 113 SLCREGYVNEVFRIAEDMPQGKSVNEEFA--CGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLV--SYNSIVHGLCKHG 188 (512)
Q Consensus 113 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~--~~~~l~~~~~~~~ 188 (512)
..+..|+.+-+..+++. |..|+... ..+.+...+..|+.+ +.+.+.+.|..|+.. .....+...+..|
T Consensus 8 ~A~~~g~~~iv~~Ll~~----g~~~n~~~~~g~tpL~~A~~~~~~~----~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g 79 (413)
T PHA02875 8 DAILFGELDIARRLLDI----GINPNFEIYDGISPIKLAMKFRDSE----AIKLLMKHGAIPDVKYPDIESELHDAVEEG 79 (413)
T ss_pred HHHHhCCHHHHHHHHHC----CCCCCccCCCCCCHHHHHHHcCCHH----HHHHHHhCCCCccccCCCcccHHHHHHHCC
Confidence 34456777666666553 33333221 233445555566654 444555566555432 1122344445667
Q ss_pred chhHHHHHHH
Q 010342 189 GCMRAYQLLE 198 (512)
Q Consensus 189 ~~~~a~~~~~ 198 (512)
+.+.+..+++
T Consensus 80 ~~~~v~~Ll~ 89 (413)
T PHA02875 80 DVKAVEELLD 89 (413)
T ss_pred CHHHHHHHHH
Confidence 7665555443
No 444
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=45.78 E-value=71 Score=20.39 Aligned_cols=49 Identities=6% Similarity=0.179 Sum_probs=25.1
Q ss_pred CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh
Q 010342 419 HDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACK 468 (512)
Q Consensus 419 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 468 (512)
|....++.++..+++-.-.++++..+.+....|. .+..+|.--++.+++
T Consensus 6 ~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~LaR 54 (65)
T PF09454_consen 6 AEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLAR 54 (65)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHH
Confidence 3344555566666555556666666666666552 344444444444443
No 445
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=45.72 E-value=3.2e+02 Score=27.18 Aligned_cols=63 Identities=14% Similarity=0.171 Sum_probs=35.3
Q ss_pred chHhHHHHHHHHHccCChhHHHHHHHhcCCCCCCCcchhHHHHHHHHHhcCChhhHHHHHHHHHHcCC
Q 010342 103 NNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGL 170 (512)
Q Consensus 103 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~ 170 (512)
....|..|++.+.. =+.+...++++++.. . + ...+..++++....|......-+.+.+....+
T Consensus 309 ~~~~f~~lv~~lR~-~~~e~l~~l~~~~~~-~--~-~~~r~~~~Dal~~~GT~~a~~~i~~~i~~~~~ 371 (574)
T smart00638 309 AAAKFLRLVRLLRT-LSEEQLEQLWRQLYE-K--K-KKARRIFLDAVAQAGTPPALKFIKQWIKNKKI 371 (574)
T ss_pred hHHHHHHHHHHHHh-CCHHHHHHHHHHHHh-C--C-HHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCC
Confidence 34455555554433 334555555555543 1 1 45667777777777777666666666655443
No 446
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=44.82 E-value=18 Score=31.91 Aligned_cols=120 Identities=17% Similarity=0.114 Sum_probs=80.4
Q ss_pred HHhhcCCHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCh-HhHHHHHHHHHhcCCH
Q 010342 324 GLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADS-TTYAIVIDGLCESNQL 402 (512)
Q Consensus 324 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~ 402 (512)
-....|.++.|++.|...+... ++....|..-.+++.+.+....|++-+....+. .||. .-|-.-..+....|++
T Consensus 123 eAln~G~~~~ai~~~t~ai~ln--p~~a~l~~kr~sv~lkl~kp~~airD~d~A~ei--n~Dsa~~ykfrg~A~rllg~~ 198 (377)
T KOG1308|consen 123 EALNDGEFDTAIELFTSAIELN--PPLAILYAKRASVFLKLKKPNAAIRDCDFAIEI--NPDSAKGYKFRGYAERLLGNW 198 (377)
T ss_pred HHhcCcchhhhhcccccccccC--CchhhhcccccceeeeccCCchhhhhhhhhhcc--CcccccccchhhHHHHHhhch
Confidence 3567888999999998866443 555566666777888999999999998888875 3443 3455455556668999
Q ss_pred HHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 010342 403 DEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVD 449 (512)
Q Consensus 403 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 449 (512)
++|...++...+.+..+.... .+=...-..+..++-...+++..+
T Consensus 199 e~aa~dl~~a~kld~dE~~~a--~lKeV~p~a~ki~e~~~k~er~~~ 243 (377)
T KOG1308|consen 199 EEAAHDLALACKLDYDEANSA--TLKEVFPNAGKIEEHRRKYERARE 243 (377)
T ss_pred HHHHHHHHHHHhccccHHHHH--HHHHhccchhhhhhchhHHHHHHH
Confidence 999999999987765554332 233333344455555444544443
No 447
>PHA02875 ankyrin repeat protein; Provisional
Probab=44.45 E-value=2.7e+02 Score=26.06 Aligned_cols=77 Identities=12% Similarity=0.163 Sum_probs=35.5
Q ss_pred HhccCCHHHHHHHHHHHHhCCCCCCcc--cHHHHHHHHHccCChhhHHHHHHHHHhcCCCCChh--hHHHHHHHHHhcCC
Q 010342 219 LCGESDLEKARKVLQFMLSKKDVDRTR--ICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVI--TLNTVINGFCKMGR 294 (512)
Q Consensus 219 ~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~ 294 (512)
.+..|+.+.+..++ +.|..++.. .-...+...+..|+.+- .+.+.+.|..|+.. .....+......|+
T Consensus 9 A~~~g~~~iv~~Ll----~~g~~~n~~~~~g~tpL~~A~~~~~~~~----v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~ 80 (413)
T PHA02875 9 AILFGELDIARRLL----DIGINPNFEIYDGISPIKLAMKFRDSEA----IKLLMKHGAIPDVKYPDIESELHDAVEEGD 80 (413)
T ss_pred HHHhCCHHHHHHHH----HCCCCCCccCCCCCCHHHHHHHcCCHHH----HHHHHhCCCCccccCCCcccHHHHHHHCCC
Confidence 34556765554444 344443322 12233344445555543 33344455444322 11233444556677
Q ss_pred HHHHHHHHH
Q 010342 295 IEEALKVLN 303 (512)
Q Consensus 295 ~~~a~~~~~ 303 (512)
.+.+..+++
T Consensus 81 ~~~v~~Ll~ 89 (413)
T PHA02875 81 VKAVEELLD 89 (413)
T ss_pred HHHHHHHHH
Confidence 666655554
No 448
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=44.41 E-value=3e+02 Score=26.49 Aligned_cols=32 Identities=6% Similarity=0.073 Sum_probs=15.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCC
Q 010342 388 TYAIVIDGLCESNQLDEAKRFWDDIVWPSNIH 419 (512)
Q Consensus 388 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 419 (512)
.+..++.+....+....|..++.++.+.|..|
T Consensus 250 ~~~~l~~si~~~d~~~~al~~l~~l~~~G~d~ 281 (484)
T PRK14956 250 FLTSFIKSLIDPDNHSKSLEILESLYQEGQDI 281 (484)
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCH
Confidence 33444444443333445566666665555433
No 449
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=43.74 E-value=1.1e+02 Score=21.17 Aligned_cols=55 Identities=18% Similarity=0.122 Sum_probs=33.3
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCCHH
Q 010342 278 DVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQ 332 (512)
Q Consensus 278 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 332 (512)
|...-..+...+...|+++.|++.+-.+.+......+...-..++..+.-.|.-+
T Consensus 21 D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~ 75 (90)
T PF14561_consen 21 DLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGD 75 (90)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCC
Confidence 5566667777888888888888888887766532334555556665555555433
No 450
>PF11123 DNA_Packaging_2: DNA packaging protein ; InterPro: IPR024345 This entry represents Gp18 (gene 18 product), also known as DNA maturase A, from T7-like bacteriophages. In Bacteriophage T3, this protein is required for DNA packaging and functions in a complex with Gp19 [].
Probab=43.72 E-value=91 Score=20.35 Aligned_cols=32 Identities=19% Similarity=0.104 Sum_probs=21.4
Q ss_pred CHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhh
Q 010342 294 RIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLN 327 (512)
Q Consensus 294 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 327 (512)
+.+.|..++..+.... +.++..|+++...+.+
T Consensus 12 DtEmA~~mL~DLr~de--kRsPQLYnAI~k~L~R 43 (82)
T PF11123_consen 12 DTEMAQQMLADLRDDE--KRSPQLYNAIGKLLDR 43 (82)
T ss_pred HHHHHHHHHHHhcchh--hcChHHHHHHHHHHHH
Confidence 4566777777776554 5677778777665544
No 451
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=43.33 E-value=90 Score=22.47 Aligned_cols=23 Identities=13% Similarity=0.245 Sum_probs=15.4
Q ss_pred HHHHHHccCChhHHHHHHHhcCC
Q 010342 110 LVDSLCREGYVNEVFRIAEDMPQ 132 (512)
Q Consensus 110 l~~~~~~~g~~~~a~~~~~~~~~ 132 (512)
++..|...|+.++|..-+.++..
T Consensus 8 ~l~ey~~~~d~~ea~~~l~el~~ 30 (113)
T PF02847_consen 8 ILMEYFSSGDVDEAVECLKELKL 30 (113)
T ss_dssp HHHHHHHHT-HHHHHHHHHHTT-
T ss_pred HHHHHhcCCCHHHHHHHHHHhCC
Confidence 55666777888888888877643
No 452
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=43.32 E-value=2.4e+02 Score=25.01 Aligned_cols=43 Identities=2% Similarity=0.169 Sum_probs=25.0
Q ss_pred HHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 010342 265 NVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVA 307 (512)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 307 (512)
++++.+.+.++.|.-..+.-+.-.+.+.=.+.+++.+|+.+..
T Consensus 264 EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~s 306 (370)
T KOG4567|consen 264 ELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLS 306 (370)
T ss_pred HHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhc
Confidence 3455555556666666655555555555566666666666553
No 453
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=42.55 E-value=2.5e+02 Score=25.09 Aligned_cols=135 Identities=17% Similarity=0.100 Sum_probs=73.3
Q ss_pred CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhhccc---CCCCCCh
Q 010342 275 CQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQ---RGYSPGI 351 (512)
Q Consensus 275 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~ 351 (512)
+..|...++.+..+ +..++++-.+..+...+..+-..-...+......|++.|+.+.|++.+.+.+.. .|.+.|.
T Consensus 66 i~~D~~~l~~m~~~--neeki~eld~~iedaeenlGE~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDV 143 (393)
T KOG0687|consen 66 IKLDQDLLNSMKKA--NEEKIKELDEKIEDAEENLGESEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDV 143 (393)
T ss_pred eeccHHHHHHHHHh--hHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhh
Confidence 45566666665543 122344444444444443221233455667778899999999999988775532 3555665
Q ss_pred hhHHHHHH-HHHccCCHHHHHHHHHHHHhCCCCCC----hHhHHHHHHHHHhcCCHHHHHHHHHHhh
Q 010342 352 VTYNAVLR-GLFRLRRVEEAKEVFNCMLGIGVVAD----STTYAIVIDGLCESNQLDEAKRFWDDIV 413 (512)
Q Consensus 352 ~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 413 (512)
..+..-+. .|....-..+-++..+.+.+.|-..+ ..+|..+- +....++.+|-.+|-+.+
T Consensus 144 vf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlKvY~Gly--~msvR~Fk~Aa~Lfld~v 208 (393)
T KOG0687|consen 144 VFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLKVYQGLY--CMSVRNFKEAADLFLDSV 208 (393)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHHHHHHHH--HHHHHhHHHHHHHHHHHc
Confidence 54433222 22222223444444455555553332 23455443 344567888888887765
No 454
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=42.43 E-value=3.6e+02 Score=26.82 Aligned_cols=26 Identities=12% Similarity=0.100 Sum_probs=15.6
Q ss_pred hHhHHHHHHHHHhcCChhHHHHHHHHH
Q 010342 29 VVSYTTLIHGYCRTGEMDVAYKVFDEM 55 (512)
Q Consensus 29 ~~~~~~l~~~~~~~~~~~~a~~~~~~m 55 (512)
+.-|+ .+..+.-.|.++.|.+++...
T Consensus 149 p~FW~-~v~~lvlrG~~~~a~~lL~~~ 174 (566)
T PF07575_consen 149 PDFWD-YVQRLVLRGLFDQARQLLRLH 174 (566)
T ss_dssp HHHHH-HHHHHHHTT-HHHHHHHH-TT
T ss_pred hhHHH-HHHHHHHcCCHHHHHHHHHhc
Confidence 34455 566666777788887777433
No 455
>PF13934 ELYS: Nuclear pore complex assembly
Probab=42.24 E-value=2.1e+02 Score=24.12 Aligned_cols=172 Identities=13% Similarity=0.013 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChhhHHHHHHHH
Q 010342 191 MRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFM 270 (512)
Q Consensus 191 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 270 (512)
.....+++.+...+ ..+..-...+.......+.... ..........-..|.......-.-.+...+++++|.+.+
T Consensus 27 ~~L~~Ll~~i~~~~-~~~~~K~~l~~YlLlD~~~~~~-~~~~~~Fa~~f~ip~~~~~~~~g~W~LD~~~~~~A~~~L--- 101 (226)
T PF13934_consen 27 NDLRALLDLILSSN-VSLLKKHSLFYYLLLDLDDTRP-SELAESFARAFGIPPKYIKFIQGFWLLDHGDFEEALELL--- 101 (226)
T ss_pred HHHHHHHHHHhcCC-cCHHHhHHHHHHHHHhcCcccc-ccHHHHHHHHhCCCHHHHHHHHHHHHhChHhHHHHHHHh---
Q ss_pred HhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhhcccCCCCCC
Q 010342 271 LQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPG 350 (512)
Q Consensus 271 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 350 (512)
..+......-..++.++...|+.+.|+.+++..... ..+......++.. ..++.+.+|...-+......+-..-
T Consensus 102 --~~ps~~~~~~~~Il~~L~~~~~~~lAL~y~~~~~p~---l~s~~~~~~~~~~-La~~~v~EAf~~~R~~~~~~~~~l~ 175 (226)
T PF13934_consen 102 --SHPSLIPWFPDKILQALLRRGDPKLALRYLRAVGPP---LSSPEALTLYFVA-LANGLVTEAFSFQRSYPDELRRRLF 175 (226)
T ss_pred --CCCCCCcccHHHHHHHHHHCCChhHHHHHHHhcCCC---CCCHHHHHHHHHH-HHcCCHHHHHHHHHhCchhhhHHHH
Q ss_pred hhhHHHHHHHHHccCCHHHHHHH
Q 010342 351 IVTYNAVLRGLFRLRRVEEAKEV 373 (512)
Q Consensus 351 ~~~~~~l~~~~~~~~~~~~a~~~ 373 (512)
...+..++..+.+.+..++-..+
T Consensus 176 e~l~~~~~~~~~~~~~~~~Ll~L 198 (226)
T PF13934_consen 176 EQLLEHCLEECARSGRLDELLSL 198 (226)
T ss_pred HHHHHHHHHHhhhhhHHHHHHhC
No 456
>PRK09462 fur ferric uptake regulator; Provisional
Probab=41.78 E-value=1.6e+02 Score=22.66 Aligned_cols=63 Identities=10% Similarity=0.002 Sum_probs=43.5
Q ss_pred HHHHhCCCCCChHhHHHHHHHHHhc-CChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChh
Q 010342 18 FDMKSRGHVPNVVSYTTLIHGYCRT-GEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVE 81 (512)
Q Consensus 18 ~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~ 81 (512)
+.+.+.|.+++. .-..++..+... +..-.|.++++.+.+.+...+..|-...+..+...|-..
T Consensus 6 ~~l~~~glr~T~-qR~~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gli~ 69 (148)
T PRK09462 6 TALKKAGLKVTL-PRLKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIVT 69 (148)
T ss_pred HHHHHcCCCCCH-HHHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCCEE
Confidence 345566777554 456667777664 468899999999998876667777666667776666543
No 457
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=41.42 E-value=1.5e+02 Score=26.28 Aligned_cols=117 Identities=9% Similarity=0.053 Sum_probs=61.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHHHhhhcCCCCcchHhHHHHH
Q 010342 32 YTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLV 111 (512)
Q Consensus 32 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 111 (512)
-..++....+.++..+..+.+..+.. ...-...+......|++..|.+++.+..+.+..-.++ ..+..|-
T Consensus 101 ~L~Il~~~rkr~~l~~ll~~L~~i~~------v~~~~~~l~~ll~~~dy~~Al~li~~~~~~l~~l~~~----~c~~~L~ 170 (291)
T PF10475_consen 101 GLEILRLQRKRQNLKKLLEKLEQIKT------VQQTQSRLQELLEEGDYPGALDLIEECQQLLEELKGY----SCVRHLS 170 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcccc----hHHHHHh
Confidence 44455666666666666666666653 2233455666677888888888777665554322111 1111111
Q ss_pred HHHHcc-CChhH-HHHHHHhcCCCCCCCcchhHHHHHHHHHhcCChhhHHHH
Q 010342 112 DSLCRE-GYVNE-VFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRV 161 (512)
Q Consensus 112 ~~~~~~-g~~~~-a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 161 (512)
.-+... ...++ ....|..+.. ..|+..|..++.+|.-.|+...+.+-
T Consensus 171 ~~L~e~~~~i~~~ld~~l~~~~~---~Fd~~~Y~~v~~AY~lLgk~~~~~dk 219 (291)
T PF10475_consen 171 SQLQETLELIEEQLDSDLSKVCQ---DFDPDKYSKVQEAYQLLGKTQSAMDK 219 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---hCCHHHHHHHHHHHHHHhhhHHHHHH
Confidence 111000 00111 1112222221 25677888999999888877665533
No 458
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=41.30 E-value=94 Score=29.15 Aligned_cols=106 Identities=8% Similarity=-0.019 Sum_probs=74.7
Q ss_pred HHHHhhcCCHHHHHHHHHhhcccCCCCCChhh-HHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcC
Q 010342 322 IFGLLNVGRIQEALNLLYQVMPQRGYSPGIVT-YNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESN 400 (512)
Q Consensus 322 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 400 (512)
+..+...++++.|..++.++++. .|+-.. |..-..++.+.+++..|..=...+.+.. +-....|-.=..++.+.+
T Consensus 11 an~~l~~~~fd~avdlysKaI~l---dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~d-P~~~K~Y~rrg~a~m~l~ 86 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIEL---DPNCAIYFANRALAHLKVESFGGALHDALKAIELD-PTYIKAYVRRGTAVMALG 86 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHhc---CCcceeeechhhhhheeechhhhHHHHHHhhhhcC-chhhheeeeccHHHHhHH
Confidence 45667788999999999987644 565444 4444478889999999999888888754 223334555556677778
Q ss_pred CHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHh
Q 010342 401 QLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCR 433 (512)
Q Consensus 401 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 433 (512)
.+.+|...|+.... +.|+..-+..++.-|-+
T Consensus 87 ~~~~A~~~l~~~~~--l~Pnd~~~~r~~~Ec~~ 117 (476)
T KOG0376|consen 87 EFKKALLDLEKVKK--LAPNDPDATRKIDECNK 117 (476)
T ss_pred HHHHHHHHHHHhhh--cCcCcHHHHHHHHHHHH
Confidence 88888888888765 46777666666655543
No 459
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=41.21 E-value=3.2e+02 Score=27.22 Aligned_cols=75 Identities=11% Similarity=0.138 Sum_probs=55.2
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHhC--CCCCChHhHHHHHHHHHhcCCHH------HHHHHHHHhhcCCCCCCHHhHHHH
Q 010342 356 AVLRGLFRLRRVEEAKEVFNCMLGI--GVVADSTTYAIVIDGLCESNQLD------EAKRFWDDIVWPSNIHDNYVYAAM 427 (512)
Q Consensus 356 ~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~------~a~~~~~~~~~~~~~~~~~~~~~l 427 (512)
.++.+|...|++..+.++++.+... |-+.-...+|..++.+.+.|.++ .|.+.++... +.-|..||..|
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHH
Confidence 7999999999999999999999864 32333456888888888888753 4555666554 45577788877
Q ss_pred HHHHHh
Q 010342 428 IKGLCR 433 (512)
Q Consensus 428 ~~~~~~ 433 (512)
+.+-..
T Consensus 110 ~~~sln 115 (1117)
T COG5108 110 CQASLN 115 (1117)
T ss_pred HHhhcC
Confidence 766544
No 460
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=40.91 E-value=82 Score=22.86 Aligned_cols=48 Identities=10% Similarity=0.042 Sum_probs=32.8
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChh
Q 010342 34 TLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVE 81 (512)
Q Consensus 34 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~ 81 (512)
.++..+...+..-.|.++++.+.+.+...+..|....+..+...|-..
T Consensus 5 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli~ 52 (116)
T cd07153 5 AILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLVR 52 (116)
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEE
Confidence 355566666667778888888887766666766666666666666544
No 461
>PF02607 B12-binding_2: B12 binding domain; InterPro: IPR003759 Cobalamin-dependent methionine synthase (2.1.1.13 from EC) is a large modular protein that catalyses methyl transfer from methyltetrahydrofolate (CH3-H4folate) to homocysteine. During the catalytic cycle, it supports three distinct methyl transfer reactions, each involving the cobalamin (vitamin B12) cofactor and a substrate bound to its own functional unit []. The cobalamin cofactor plays an essential role in this reaction, accepting the methyl group from CH3-H4folate to form methylcob(III)alamin, and in turn donating the methyl group to homocysteine to generate methionine and cob(I)alamin. Methionine synthase is a large enzyme composed of four structurally and functionally distinct modules: the first two modules bind homocysteine and CH3-H4folate, the third module binds the cobalamin cofactor and the C-terminal module binds S-adenosylmethionine. The cobalamin-binding module is composed of two structurally distinct domains: a 4-helical bundle cap domain (residues 651-740 in the Escherichia coli enzyme) and an alpha/beta B12-binding domain (residues 741-896) (IPR006158 from INTERPRO). The 4-helical bundle forms a cap over the alpha/beta domain, which acts to shield the methyl ligand of cobalamin from solvent []. Furthermore, in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO). The alpha/beta domain is a common cobalamin-binding motif, whereas the 4-helical bundle domain with its methyl cap is a distinctive feature of methionine synthases. This entry represents the 4-helical bundle cap domain. This domain is also present in other shorter proteins that bind to B12, and is always found N terminus to the alpha/beta B12-binding domain.; GO: 0008705 methionine synthase activity, 0031419 cobalamin binding, 0046872 metal ion binding, 0009086 methionine biosynthetic process; PDB: 3EZX_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 2I2X_P.
Probab=40.12 E-value=41 Score=22.25 Aligned_cols=37 Identities=19% Similarity=0.317 Sum_probs=21.7
Q ss_pred cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcC
Q 010342 434 SGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLS 470 (512)
Q Consensus 434 ~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 470 (512)
.|+.+.+.+++++..+.|..|.......+.-+..+.|
T Consensus 14 ~~d~~~~~~~~~~~l~~g~~~~~i~~~~l~p~m~~iG 50 (79)
T PF02607_consen 14 AGDEEEAEALLEEALAQGYPPEDIIEEILMPAMEEIG 50 (79)
T ss_dssp TT-CCHHHHHHHHHHHCSSSTTHHHHHTHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 4666777777777776666655555555555544433
No 462
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=39.93 E-value=78 Score=20.23 Aligned_cols=48 Identities=10% Similarity=0.187 Sum_probs=23.9
Q ss_pred CChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHH
Q 010342 384 ADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLC 432 (512)
Q Consensus 384 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 432 (512)
|....++.+++.+++..-.+.++..+.++...| ..+..+|---++.++
T Consensus 6 ~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g-~I~~d~~lK~vR~La 53 (65)
T PF09454_consen 6 AEDPLSNQLYELVAEDHAIEDTIYYLDRALQRG-SIDLDTFLKQVRSLA 53 (65)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SS-HHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence 344455555555555555566666666665555 234444444444433
No 463
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=39.63 E-value=1.8e+02 Score=25.67 Aligned_cols=23 Identities=13% Similarity=0.276 Sum_probs=12.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHh
Q 010342 284 TVINGFCKMGRIEEALKVLNDMV 306 (512)
Q Consensus 284 ~l~~~~~~~~~~~~a~~~~~~~~ 306 (512)
..++.+...|++..|++++.+..
T Consensus 132 ~~l~~ll~~~dy~~Al~li~~~~ 154 (291)
T PF10475_consen 132 SRLQELLEEGDYPGALDLIEECQ 154 (291)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHH
Confidence 34444555566666666665544
No 464
>PF14929 TAF1_subA: TAF RNA Polymerase I subunit A
Probab=38.49 E-value=4e+02 Score=26.23 Aligned_cols=151 Identities=14% Similarity=0.103 Sum_probs=78.3
Q ss_pred ccCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCCHHHHH
Q 010342 256 LIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEAL 335 (512)
Q Consensus 256 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 335 (512)
..++.++|+..++.....+...-+.-....+.-++.......-...|+...+.+ |.-..+..-++..+.. ...+.
T Consensus 321 ~~~~l~eal~~~e~~c~~~~~~lpi~~~~~lle~~d~~~~~~l~~~~e~~~~~~--P~~~~~le~l~~~~~~---~~~~~ 395 (547)
T PF14929_consen 321 IGGRLKEALNELEKFCISSTCALPIRLRAHLLEYFDQNNSSVLSSCLEDCLKKD--PTMSYSLERLILLHQK---DYSAE 395 (547)
T ss_pred ccccHHHHHHHHHHhccCCCccchHHHHHHHHHHhCcccHHHHHHHHHHHhcCC--CcHHHHHHHHHhhhhh---HHHHH
Confidence 346777777766665544322111111222222233336667777888877654 2333333333333322 44555
Q ss_pred HHHHhhcccCCCCCChhhHHHHHHHHHc-----c---CCHHHHHHHHHHHHh-CCCCCChHhHHHHHHHHHhcCCHHHHH
Q 010342 336 NLLYQVMPQRGYSPGIVTYNAVLRGLFR-----L---RRVEEAKEVFNCMLG-IGVVADSTTYAIVIDGLCESNQLDEAK 406 (512)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~---~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~ 406 (512)
++++-+.......|...+|.-+...+.+ . .+...+..++=.+.. .+..-+...|..+....-+....+-..
T Consensus 396 ~Lle~i~~~l~~~~s~~iwle~~~~~l~~~~~~~~~~e~~~~~l~vlf~~LDf~~~r~n~~aW~~l~~~l~~i~~~~~~~ 475 (547)
T PF14929_consen 396 QLLEMIALHLDLVPSHPIWLEFVSCFLKNPSRFEDKEEDHKSALKVLFEFLDFAGWRKNIQAWKLLAKKLPKIFDLDWVR 475 (547)
T ss_pred HHHHHHHHHhhcCCCchHHHHHHHHHHhccccccccHHHHHHHHhcchhcccccccccccHHHHHHHHHhhHhhhhhchH
Confidence 5554332344445778888877777766 2 234455555555554 344556667776665555444444444
Q ss_pred HHHHH
Q 010342 407 RFWDD 411 (512)
Q Consensus 407 ~~~~~ 411 (512)
+.|+.
T Consensus 476 ~~W~~ 480 (547)
T PF14929_consen 476 EEWRS 480 (547)
T ss_pred HHHHH
Confidence 55554
No 465
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=38.41 E-value=2.5e+02 Score=23.88 Aligned_cols=58 Identities=5% Similarity=0.102 Sum_probs=31.2
Q ss_pred HHHHHHccCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHh-cCCHHHHHHHHHHHhh
Q 010342 250 YLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCK-MGRIEEALKVLNDMVA 307 (512)
Q Consensus 250 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~ 307 (512)
+++.+...++++++...+..+...+...+..-.+.+-.+|-. .|....+++++..+..
T Consensus 7 ~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~ 65 (236)
T PF00244_consen 7 LAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQ 65 (236)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhh
Confidence 444555566666666666666666555565555555555532 2445556666655543
No 466
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=38.06 E-value=1.6e+02 Score=21.68 Aligned_cols=70 Identities=9% Similarity=0.055 Sum_probs=35.0
Q ss_pred hHHHHHHH--HHhcCChhHHHHHHHHH-Hh-CCCCC---------ChhhHHHHHHHHHhcCChhhHHHHHHHHHHHhhhc
Q 010342 31 SYTTLIHG--YCRTGEMDVAYKVFDEM-RH-CGVLP---------NSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEE 97 (512)
Q Consensus 31 ~~~~l~~~--~~~~~~~~~a~~~~~~m-~~-~~~~~---------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 97 (512)
+|..|-.+ -...|.+++|..-..+. .- +.++| |...+..|-.++...|++++++.-....+..+...
T Consensus 9 aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRR 88 (144)
T PF12968_consen 9 AYMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRR 88 (144)
T ss_dssp HHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhc
Confidence 34444443 23456677665555543 22 23333 22345556677778888888776655555544444
Q ss_pred CCC
Q 010342 98 EDL 100 (512)
Q Consensus 98 ~~~ 100 (512)
+.+
T Consensus 89 GEL 91 (144)
T PF12968_consen 89 GEL 91 (144)
T ss_dssp --T
T ss_pred ccc
Confidence 333
No 467
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=37.97 E-value=2.1e+02 Score=30.89 Aligned_cols=125 Identities=17% Similarity=0.064 Sum_probs=66.0
Q ss_pred ccCcHHHHHH------HHHHHHhCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHh-----CCC--CCChhhHHHHHH
Q 010342 6 GLSRVGEAHK------LFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRH-----CGV--LPNSLTYSVLVR 72 (512)
Q Consensus 6 ~~g~~~~A~~------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~-----~~~--~~~~~~~~~l~~ 72 (512)
..|.+.+|.+ +++.....-.++....|..|...+-+.++.++|...=.+..- .|. +-+...|..+..
T Consensus 944 ~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal 1023 (1236)
T KOG1839|consen 944 LEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLAL 1023 (1236)
T ss_pred cccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHH
Confidence 3455555555 666444433455677788888888899999888776554311 121 112334544544
Q ss_pred HHHhcCChhhHHHHHHHHHHHhhhcC--CCCcchHhHHHHHHHHHccCChhHHHHHHHhc
Q 010342 73 GVLRTRDVERANVLMFKLWERMKEEE--DLSVNNAAFANLVDSLCREGYVNEVFRIAEDM 130 (512)
Q Consensus 73 ~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 130 (512)
.+...+....|...+.+....+.-.. ...+...+++.+-..+...++++.|.++.+..
T Consensus 1024 ~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A 1083 (1236)
T KOG1839|consen 1024 YEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESA 1083 (1236)
T ss_pred HHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHH
Confidence 55555566666665555544333211 22333334444444444445555555555443
No 468
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=37.85 E-value=4.4e+02 Score=26.54 Aligned_cols=224 Identities=13% Similarity=0.048 Sum_probs=90.9
Q ss_pred hhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHhccCc-------hhHHHHHHHHHHhCCCCCchh--
Q 010342 140 FACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGG-------CMRAYQLLEEGIQFGYLPSEH-- 210 (512)
Q Consensus 140 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~-------~~~a~~~~~~~~~~~~~~~~~-- 210 (512)
..|. +|-.|.+.|++++|.++....... .......+...+..|....+ -++...-|++........|+.
T Consensus 113 p~Wa-~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~~~~DpyK~ 190 (613)
T PF04097_consen 113 PIWA-LIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNSTDGDPYKR 190 (613)
T ss_dssp EHHH-HHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-TTS-HHHH
T ss_pred ccHH-HHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCCCCCChHHH
Confidence 3443 778889999999999998555543 34455677788888876533 234555565555443222432
Q ss_pred -hHHHHHHHHhccCCH-HH---HHHH--HHHH-HhCCCCCCcccHHHHHHHHHccCChhhHHHHHHHHHhcCCCCChhhH
Q 010342 211 -TYKVLVEGLCGESDL-EK---ARKV--LQFM-LSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITL 282 (512)
Q Consensus 211 -~~~~l~~~~~~~g~~-~~---a~~~--~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 282 (512)
.|..+..+=....+. +- .+++ ++-. .......+.... ..-..+...+.+...-+..+.+ ....
T Consensus 191 AvY~ilg~cD~~~~~~~~V~~tiED~LW~~L~~vr~~~~~~~~~~--------e~~~L~~LQ~~i~~~Ge~~F~~-~~~p 261 (613)
T PF04097_consen 191 AVYKILGRCDLSRRHLPEVARTIEDWLWLQLSLVREDERSSSSAY--------ERYTLEDLQKLILKYGESHFNA-GSNP 261 (613)
T ss_dssp HHHHHHHT--CCC-S-TTC--SHHHHHHHHHHH---TTSSSSSSS------------HHHHHHHHHHH-GGGCTT-----
T ss_pred HHHHHHhcCCccccchHHHhCcHHHHHHHHHHhhccCCCcccccc--------ccccHHHHHHHHHHhchhhccc-chhH
Confidence 333332111111111 00 1111 0111 101110000000 0001112222222222222332 1111
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhhcccCCCCCChhhHHHHHHHHH
Q 010342 283 NTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLF 362 (512)
Q Consensus 283 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 362 (512)
-.....+.-.|.+|.|++.+-.... ...+..++...+..|.-.+-..... ...+....-.|.+.-+..||..|.
T Consensus 262 ~~Yf~~LlLtgqFE~AI~~L~~~~~---~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~ 335 (613)
T PF04097_consen 262 LLYFQVLLLTGQFEAAIEFLYRNEF---NRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYT 335 (613)
T ss_dssp --HHHHHHHTT-HHHHHHHHHT--T----HHHHHHHHHHHHHTT---------------------------HHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHhhcc---CcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHH
Confidence 2234455667999999999877221 1455666655554443222222111 121211111222255777787776
Q ss_pred c---cCCHHHHHHHHHHHHhC
Q 010342 363 R---LRRVEEAKEVFNCMLGI 380 (512)
Q Consensus 363 ~---~~~~~~a~~~~~~~~~~ 380 (512)
+ ..+...|.+.|--+...
T Consensus 336 ~~F~~td~~~Al~Y~~li~~~ 356 (613)
T PF04097_consen 336 RSFEITDPREALQYLYLICLF 356 (613)
T ss_dssp HTTTTT-HHHHHHHHHGGGGS
T ss_pred HHHhccCHHHHHHHHHHHHHc
Confidence 5 55777888887766654
No 469
>PRK09857 putative transposase; Provisional
Probab=37.40 E-value=2.9e+02 Score=24.43 Aligned_cols=65 Identities=14% Similarity=0.183 Sum_probs=38.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 010342 390 AIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPN 455 (512)
Q Consensus 390 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~ 455 (512)
..++......++.++..++++.+.+. .+.......+++.-+...|.-+++.++..+|...|+.++
T Consensus 210 ~~ll~Yi~~~~~~~~~~~~~~~l~~~-~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~~ 274 (292)
T PRK09857 210 KGLFNYILQTGDAVRFNDFIDGVAER-SPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPLA 274 (292)
T ss_pred HHHHHHHhhccccchHHHHHHHHHHh-CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 34444334556655556666555443 233333445566666666766777788888888776654
No 470
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=37.28 E-value=96 Score=18.79 Aligned_cols=33 Identities=21% Similarity=0.234 Sum_probs=22.2
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhH
Q 010342 33 TTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTY 67 (512)
Q Consensus 33 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~ 67 (512)
..+.-++.+.|++++|++..+.+.+. .|+..-.
T Consensus 5 Y~lAig~ykl~~Y~~A~~~~~~lL~~--eP~N~Qa 37 (53)
T PF14853_consen 5 YYLAIGHYKLGEYEKARRYCDALLEI--EPDNRQA 37 (53)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHH--TTS-HHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhh--CCCcHHH
Confidence 34566778888888888888888875 4655433
No 471
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=37.25 E-value=3.3e+02 Score=25.02 Aligned_cols=65 Identities=14% Similarity=0.089 Sum_probs=45.9
Q ss_pred CHHhHHHH---HHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHH-hcCCHHHHHHHHHHHHH
Q 010342 420 DNYVYAAM---IKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGAC-KLSMKREAYQILREMRK 484 (512)
Q Consensus 420 ~~~~~~~l---~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~-~~g~~~~a~~~~~~m~~ 484 (512)
|...|.++ +..+.+.|.+..|.++.+-+...++.-|+......|..|+ ++++++--+++.+....
T Consensus 99 NR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 99 NRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred chHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 44444443 4567788899999999888888775557766667777664 67788777777776554
No 472
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=36.89 E-value=81 Score=23.12 Aligned_cols=51 Identities=12% Similarity=0.034 Sum_probs=35.6
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChh
Q 010342 31 SYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVE 81 (512)
Q Consensus 31 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~ 81 (512)
.-..++..+...+.+-.|.++++.+.+.+...+..|...-+..+.+.|-..
T Consensus 9 ~R~~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gli~ 59 (120)
T PF01475_consen 9 QRLAILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAGLIR 59 (120)
T ss_dssp HHHHHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCCeEE
Confidence 345677777777778889999999988876677776656666666665543
No 473
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=36.81 E-value=2.1e+02 Score=22.71 Aligned_cols=24 Identities=25% Similarity=0.213 Sum_probs=10.8
Q ss_pred CchhHHHHHHHHHHhCCCCCchhh
Q 010342 188 GGCMRAYQLLEEGIQFGYLPSEHT 211 (512)
Q Consensus 188 ~~~~~a~~~~~~~~~~~~~~~~~~ 211 (512)
++.-.|.++++.+.+.+...+..|
T Consensus 39 ~~hlSa~eI~~~L~~~~~~is~aT 62 (169)
T PRK11639 39 PGAISAYDLLDLLREAEPQAKPPT 62 (169)
T ss_pred CCCCCHHHHHHHHHhhCCCCCcch
Confidence 344445555555554443333333
No 474
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=36.79 E-value=3.1e+02 Score=24.54 Aligned_cols=97 Identities=13% Similarity=0.100 Sum_probs=57.0
Q ss_pred hhhHHHHHHHHHccCCHHHHHHHHHHHHh----CCCCCChHhHHHHHH-HHHhcCCHHHHHHHHHHhhcCCCCCC----H
Q 010342 351 IVTYNAVLRGLFRLRRVEEAKEVFNCMLG----IGVVADSTTYAIVID-GLCESNQLDEAKRFWDDIVWPSNIHD----N 421 (512)
Q Consensus 351 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~~~l~~-~~~~~g~~~~a~~~~~~~~~~~~~~~----~ 421 (512)
...+......|++.|+.+.|.+.+++..+ .|.+.|...+..-+. .|....-+.+-.+..+.+.+.|...+ .
T Consensus 104 ~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRl 183 (393)
T KOG0687|consen 104 REAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRL 183 (393)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhH
Confidence 34566677789999999999988876654 566667665443332 23222222333333333333443332 3
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 010342 422 YVYAAMIKGLCRSGKIHEAVHFLYELVD 449 (512)
Q Consensus 422 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 449 (512)
.+|..+- |....++.+|-.+|-..+.
T Consensus 184 KvY~Gly--~msvR~Fk~Aa~Lfld~vs 209 (393)
T KOG0687|consen 184 KVYQGLY--CMSVRNFKEAADLFLDSVS 209 (393)
T ss_pred HHHHHHH--HHHHHhHHHHHHHHHHHcc
Confidence 3555543 3345688999999877664
No 475
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=36.67 E-value=2.5e+02 Score=23.42 Aligned_cols=63 Identities=14% Similarity=0.106 Sum_probs=36.2
Q ss_pred HHHHHHHHHhcCC-------HHHHHHHHHHhhcCCCCC----C-HHhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 010342 389 YAIVIDGLCESNQ-------LDEAKRFWDDIVWPSNIH----D-NYVYAAMIKGLCRSGKIHEAVHFLYELVDSG 451 (512)
Q Consensus 389 ~~~l~~~~~~~g~-------~~~a~~~~~~~~~~~~~~----~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 451 (512)
+-.+...|...|+ +..|.+.|.+.......| + ..+.-.+.....+.|+.++|.+.|.+++..+
T Consensus 121 ~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 121 CLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 3334445555555 344555555554332221 2 2233445566777888899998888888754
No 476
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=36.23 E-value=2.3e+02 Score=22.87 Aligned_cols=66 Identities=12% Similarity=0.079 Sum_probs=34.9
Q ss_pred HHHHHHHHHHhhcCCCCCC--HHh-----HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcC
Q 010342 402 LDEAKRFWDDIVWPSNIHD--NYV-----YAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLS 470 (512)
Q Consensus 402 ~~~a~~~~~~~~~~~~~~~--~~~-----~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 470 (512)
++.|..+|+.+.+....|. ... --..+-.|.+.|.+++|.+++++..+ .|+......-+....+..
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~---d~~~~~~r~kL~~II~~K 157 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFS---DPESQKLRMKLLMIIREK 157 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhc---CCCchhHHHHHHHHHHcc
Confidence 4566667766654432221 111 12233467777888888888877766 334444344444444433
No 477
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=36.12 E-value=1.7e+02 Score=21.14 Aligned_cols=79 Identities=19% Similarity=0.101 Sum_probs=31.9
Q ss_pred CHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHH
Q 010342 366 RVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLY 445 (512)
Q Consensus 366 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 445 (512)
..++|..+.+.+...+. -...+--.-+..+.+.|++++| +..-... ..||...|-+| +-.+.|-.+++...+.
T Consensus 21 cH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~A---Ll~~~~~-~~pdL~p~~AL--~a~klGL~~~~e~~l~ 93 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEA---LLLPQCH-CYPDLEPWAAL--CAWKLGLASALESRLT 93 (116)
T ss_dssp -HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHH---HHHHTTS---GGGHHHHHH--HHHHCT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHH---HHhcccC-CCccHHHHHHH--HHHhhccHHHHHHHHH
Confidence 45556666655555431 1111222223345556666665 1111111 24554444443 2234555555555555
Q ss_pred HHHHCC
Q 010342 446 ELVDSG 451 (512)
Q Consensus 446 ~~~~~~ 451 (512)
++...|
T Consensus 94 rla~~g 99 (116)
T PF09477_consen 94 RLASSG 99 (116)
T ss_dssp HHCT-S
T ss_pred HHHhCC
Confidence 554433
No 478
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=35.71 E-value=2.7e+02 Score=28.83 Aligned_cols=129 Identities=15% Similarity=0.155 Sum_probs=75.6
Q ss_pred HhhcCCHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHH
Q 010342 325 LLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDE 404 (512)
Q Consensus 325 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 404 (512)
+...|+.+.|++.-.+ -.+..+|..|.....+.|+.+-|+..|++... |..|--.|.-.|+.++
T Consensus 653 aLe~gnle~ale~akk-------ldd~d~w~rLge~Al~qgn~~IaEm~yQ~~kn---------fekLsfLYliTgn~eK 716 (1202)
T KOG0292|consen 653 ALECGNLEVALEAAKK-------LDDKDVWERLGEEALRQGNHQIAEMCYQRTKN---------FEKLSFLYLITGNLEK 716 (1202)
T ss_pred ehhcCCHHHHHHHHHh-------cCcHHHHHHHHHHHHHhcchHHHHHHHHHhhh---------hhheeEEEEEeCCHHH
Confidence 4566777777775543 12556788888888888888888888877654 3334445666777777
Q ss_pred HHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 010342 405 AKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRK 484 (512)
Q Consensus 405 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 484 (512)
-.++...+... .|.. .....-...|+.++=.+++... |..|- .| + .....|.-++|.++.++..+
T Consensus 717 L~Km~~iae~r---~D~~---~~~qnalYl~dv~ervkIl~n~---g~~~l--ay---l-ta~~~G~~~~ae~l~ee~~~ 781 (1202)
T KOG0292|consen 717 LSKMMKIAEIR---NDAT---GQFQNALYLGDVKERVKILENG---GQLPL--AY---L-TAAAHGLEDQAEKLGEELEK 781 (1202)
T ss_pred HHHHHHHHHhh---hhhH---HHHHHHHHhccHHHHHHHHHhc---CcccH--HH---H-HHhhcCcHHHHHHHHHhhcc
Confidence 76666655422 2221 1122223457777766666432 22211 11 1 12236777888888888765
No 479
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=35.56 E-value=1.7e+02 Score=21.05 Aligned_cols=20 Identities=20% Similarity=0.295 Sum_probs=9.4
Q ss_pred HHHHHhcCCHHHHHHHHHHh
Q 010342 393 IDGLCESNQLDEAKRFWDDI 412 (512)
Q Consensus 393 ~~~~~~~g~~~~a~~~~~~~ 412 (512)
+.-|...|+.++|...+.++
T Consensus 9 l~ey~~~~d~~ea~~~l~el 28 (113)
T PF02847_consen 9 LMEYFSSGDVDEAVECLKEL 28 (113)
T ss_dssp HHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHhcCCCHHHHHHHHHHh
Confidence 33444445555555555554
No 480
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=35.22 E-value=2.5e+02 Score=23.03 Aligned_cols=64 Identities=8% Similarity=-0.023 Sum_probs=0.0
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 010342 421 NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRK 484 (512)
Q Consensus 421 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 484 (512)
....+.++..|.-.||++.|.+.|.-++......=...|..=+..+.+.+......+.++.|..
T Consensus 41 l~~L~~lLh~~llr~d~~rA~Raf~lLiR~~~VDiR~~W~iG~eIL~~~~~~~~~~~fl~~l~~ 104 (199)
T PF04090_consen 41 LRVLTDLLHLCLLRGDWDRAYRAFGLLIRCPEVDIRSLWGIGAEILMRRGEQNSELEFLEWLIS 104 (199)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHcCCCCChHhcchHHHHHHHcCCCcchHHHHHHHHHH
No 481
>PF07064 RIC1: RIC1; InterPro: IPR009771 This entry represents RIC1 (Ribosomal control protein1) and has been identified in yeast as a Golgi protein involved in retrograde transport to the cis-Golgi network. It forms a heterodimer with Rgp1 and functions as a guanyl-nucleotide exchange factor [] which activates YPT6 by exchanging bound GDP for free GTP. RIC1 is thereby required for efficient fusion of endosome-derived vesicles with the Golgi. The RIC1-RGP1 complex participates in the recycling of SNC1, presumably by mediating fusion of endosomal vesicles with the Golgi compartment and may also be indirectly involved in the transcription of both ribosomal protein genes and ribosomal RNA [, , ].
Probab=34.74 E-value=3e+02 Score=23.79 Aligned_cols=153 Identities=12% Similarity=0.023 Sum_probs=0.0
Q ss_pred CccccccCcHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCh-----hHHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 010342 1 MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEM-----DVAYKVFDEMRHCGVLPNSLTYSVLVRGVL 75 (512)
Q Consensus 1 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-----~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~ 75 (512)
|..+++.|....|..+.+.+... +.=..+...|++........ ......+....+. -.....|..++..|+
T Consensus 89 L~~lL~~~~~~~a~~i~~~y~~l--~~F~~~LE~LLh~vL~~e~~~~~~~~~~~~~L~~v~~l--l~~f~~~l~Ivv~C~ 164 (258)
T PF07064_consen 89 LRHLLRRNLDEEALEIASKYRSL--PYFSHALELLLHTVLEEEADSSEDSPIPDALLPRVISL--LQEFPEYLEIVVNCA 164 (258)
T ss_pred HHHHHhcCCcHHHHHHHHHhccC--CCcHHHHHHHHHHHHhhcccccccccchHHHHHHHHHH--HHcCcchHHHHHHHH
Q ss_pred hcCChhhHHHHHHHHHHHhhhcCCCCcchHhHHHHHHHHHccCChhHHHHHHHhcCCCCCCCc------chhHHHHHHHH
Q 010342 76 RTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNE------EFACGHMIDSL 149 (512)
Q Consensus 76 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~------~~~~~~l~~~~ 149 (512)
+.-+...-..++..+ +...+ |+..|.+.|+++.|-.++--+........ ...-..++...
T Consensus 165 RKtE~~~W~~LF~~l--------g~P~d------Lf~~cl~~~~l~tAa~yLlVl~~~e~~~~~~~~~~~~~al~LL~~a 230 (258)
T PF07064_consen 165 RKTEVRYWPYLFDYL--------GSPRD------LFEECLENGNLKTAASYLLVLQNLEGSSVVKDEESRQCALRLLVMA 230 (258)
T ss_pred HhhHHHHHHHHHHhc--------CCHHH------HHHHHHHcCcHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHH
Q ss_pred HhcCChhhHHHHHHHHHHcCCC
Q 010342 150 CRSGRNHGASRVVYVMRKRGLT 171 (512)
Q Consensus 150 ~~~~~~~~a~~~~~~~~~~g~~ 171 (512)
...++|+-+.++.+-++..+..
T Consensus 231 ~~~~~w~Lc~eL~RFL~~ld~~ 252 (258)
T PF07064_consen 231 LESGDWDLCFELVRFLKALDPE 252 (258)
T ss_pred HhcccHHHHHHHHHHHHHhCcc
No 482
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=34.59 E-value=1.4e+02 Score=21.53 Aligned_cols=24 Identities=25% Similarity=0.382 Sum_probs=12.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCC
Q 010342 463 IDGACKLSMKREAYQILREMRKNG 486 (512)
Q Consensus 463 ~~~~~~~g~~~~a~~~~~~m~~~~ 486 (512)
+.-+.++...++|+++++-|.+.|
T Consensus 68 iD~lrRC~T~EEALEVInylek~G 91 (128)
T PF09868_consen 68 IDYLRRCKTDEEALEVINYLEKRG 91 (128)
T ss_pred HHHHHHhCcHHHHHHHHHHHHHhC
Confidence 344444455555555555555544
No 483
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=34.29 E-value=5.2e+02 Score=26.37 Aligned_cols=176 Identities=13% Similarity=0.152 Sum_probs=80.9
Q ss_pred cHHHHHHHHHccCChhhHHHHHHHHHhcCC------CCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHhhC-CCCCCcHHH
Q 010342 246 ICNIYLRALCLIKNPTELLNVLVFMLQTQC------QPD-VITLNTVINGFCKMGRIEEALKVLNDMVAG-KFCAPDAVT 317 (512)
Q Consensus 246 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~------~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~ 317 (512)
+...++-.|....+++...++.+.+....- .++ ...|...++---+-|+-++|+.+.-.+.+. +...||...
T Consensus 203 ~V~nlmlSyRDvQdY~amirLVe~Lk~iP~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~vapDm~C 282 (1226)
T KOG4279|consen 203 TVSNLMLSYRDVQDYDAMIRLVEDLKRIPDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVAPDMYC 282 (1226)
T ss_pred HHHHHHhhhccccchHHHHHHHHHHHhCcchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCCCceee
Confidence 444444445555555555555554443210 001 112222232223446666666665554433 333444322
Q ss_pred HH-----H--HHHHHhhcCCHHHHHHHHHhhcccCCCCCChh---hHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChH
Q 010342 318 FT-----T--IIFGLLNVGRIQEALNLLYQVMPQRGYSPGIV---TYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADST 387 (512)
Q Consensus 318 ~~-----~--l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 387 (512)
.. - +-+.|...+..+.|..+|++..+ +.|+.. -+..|+.+-.+ .++...+ ++.-|
T Consensus 283 l~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFe---veP~~~sGIN~atLL~aaG~--~Fens~E----lq~Ig------ 347 (1226)
T KOG4279|consen 283 LCGRIYKDMFIASNYTDAESLNHAIEWYRKAFE---VEPLEYSGINLATLLRAAGE--HFENSLE----LQQIG------ 347 (1226)
T ss_pred eechhhhhhhhccCCcchhhHHHHHHHHHHHhc---cCchhhccccHHHHHHHhhh--hccchHH----HHHHH------
Confidence 11 1 11223445566777787877543 344433 23334433221 2222222 11112
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 010342 388 TYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSG 451 (512)
Q Consensus 388 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 451 (512)
..|-..+.+.|.+++...+|+-.. .+.+-.-.+++.+|++.-+.|.+..
T Consensus 348 --mkLn~LlgrKG~leklq~YWdV~~-------------y~~asVLAnd~~kaiqAae~mfKLk 396 (1226)
T KOG4279|consen 348 --MKLNSLLGRKGALEKLQEYWDVAT-------------YFEASVLANDYQKAIQAAEMMFKLK 396 (1226)
T ss_pred --HHHHHHhhccchHHHHHHHHhHHH-------------hhhhhhhccCHHHHHHHHHHHhccC
Confidence 112334566777777777776432 2223334567778888777777753
No 484
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=32.85 E-value=2.2e+02 Score=21.64 Aligned_cols=64 Identities=8% Similarity=0.153 Sum_probs=29.4
Q ss_pred hhhHHHHHHHHHhcC---CHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhhc
Q 010342 279 VITLNTVINGFCKMG---RIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVM 342 (512)
Q Consensus 279 ~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 342 (512)
..+--.+..++.++. +..+.+.+++.+.+............-+.-++.+.++++.+.++++..+
T Consensus 32 ~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll 98 (149)
T KOG3364|consen 32 KQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALL 98 (149)
T ss_pred HHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHH
Confidence 333334444444443 2444555566555422112222333334445566666666666555543
No 485
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=32.83 E-value=3.6e+02 Score=24.11 Aligned_cols=57 Identities=18% Similarity=0.222 Sum_probs=34.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHh
Q 010342 284 TVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQ 340 (512)
Q Consensus 284 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 340 (512)
.+.-+-.+.|+..+|.+.|+++.+......-...-..++.++....-+.+...++-+
T Consensus 280 RLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavLak 336 (556)
T KOG3807|consen 280 RLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVLAK 336 (556)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344455567889999999888876532111122234567777766666666555544
No 486
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=32.74 E-value=1.3e+02 Score=21.83 Aligned_cols=43 Identities=23% Similarity=0.266 Sum_probs=19.7
Q ss_pred HHHHHhcCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHhccC
Q 010342 146 IDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHG 188 (512)
Q Consensus 146 ~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~ 188 (512)
+..+...+..-.|.++++.+.+.+..++..|.-..++.+...|
T Consensus 7 l~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~G 49 (116)
T cd07153 7 LEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAG 49 (116)
T ss_pred HHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCC
Confidence 3333334444455555555555544444444333334443333
No 487
>COG5071 RPN5 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=32.60 E-value=3.5e+02 Score=23.85 Aligned_cols=74 Identities=11% Similarity=-0.030 Sum_probs=38.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCCCcHH-----HHHHHHHHHhhcCCHHHHHHHHHhhcccCCCCCChhhHHHHHH
Q 010342 286 INGFCKMGRIEEALKVLNDMVAGKFCAPDAV-----TFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLR 359 (512)
Q Consensus 286 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 359 (512)
++.|...+++-.|--.-+.+.+..+..|+.. -|+.+++.......+-++-+.+++.-....+..++.+|..+++
T Consensus 178 ~rL~vl~~Dy~~A~~~~kKI~KK~Fe~~d~~slKlkyYeL~V~i~Lh~R~Yl~v~~y~~~vY~t~~~~~d~Akwk~VLS 256 (439)
T COG5071 178 VRLFLLRSDYYMASTYTKKINKKFFEKEDVQSLKLKYYELKVRIGLHDRAYLDVCKYYRAVYDTAVVQEDPAKWKEVLS 256 (439)
T ss_pred HHHHHhccchHHHHHHHHHHHHHHhccccHHHHHHHHHHHhheeecccHHHHHHHHHHHHHHHHHHhccCcccccchhh
Confidence 3445556677766666666655544344433 2444555445555555666555554434444445555544444
No 488
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=32.45 E-value=4.8e+02 Score=25.42 Aligned_cols=22 Identities=36% Similarity=0.536 Sum_probs=13.0
Q ss_pred HHHHHHHhhcCCHHHHHHHHHh
Q 010342 319 TTIIFGLLNVGRIQEALNLLYQ 340 (512)
Q Consensus 319 ~~l~~~~~~~~~~~~a~~~~~~ 340 (512)
..++.-|.+.++.++|..++..
T Consensus 412 ~eL~~~yl~~~qi~eAi~lL~s 433 (545)
T PF11768_consen 412 VELISQYLRCDQIEEAINLLLS 433 (545)
T ss_pred HHHHHHHHhcCCHHHHHHHHHh
Confidence 3445556666666666666654
No 489
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=31.70 E-value=4.4e+02 Score=24.70 Aligned_cols=67 Identities=19% Similarity=0.153 Sum_probs=50.1
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhC------CCCC-ChhhHHHHHHHHHhcCChhhHHHHHHHHHHHhhhc
Q 010342 31 SYTTLIHGYCRTGEMDVAYKVFDEMRHC------GVLP-NSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEE 97 (512)
Q Consensus 31 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~------~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 97 (512)
+...|++..+-.|++..|+++++.+.-. .+++ ...++..+.-+|.-.+++..|.+.+..++-.+.+.
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~yi~r~ 197 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLYIQRT 197 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456777888899999999999876321 1222 44567778888999999999999998887655544
No 490
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=31.59 E-value=4.2e+02 Score=24.48 Aligned_cols=97 Identities=11% Similarity=0.033 Sum_probs=52.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhCCC--CCCc--HHHHHHHHHHHhhcCCHHHHHHHHHhhcccCCCCCCh-----hhH
Q 010342 284 TVINGFCKMGRIEEALKVLNDMVAGKF--CAPD--AVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGI-----VTY 354 (512)
Q Consensus 284 ~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-----~~~ 354 (512)
.+...+...|+.++|..++.+..-... +... ..-.---++.|...+++-.|--+-.++-...=-.|+. .-|
T Consensus 136 ~L~~ike~~Gdi~~Aa~il~el~VETygsm~~~ekV~fiLEQmrKOG~~~D~vra~i~skKI~~K~F~~~~~~~lKlkyY 215 (439)
T KOG1498|consen 136 MLAKIKEEQGDIAEAADILCELQVETYGSMEKSEKVAFILEQMRLCLLRLDYVRAQIISKKINKKFFEKPDVQELKLKYY 215 (439)
T ss_pred HHHHHHHHcCCHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHhcCCccHHHHHHHHH
Confidence 455666778888888888876542110 0000 0001112455666777777655444432211113332 346
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHhC
Q 010342 355 NAVLRGLFRLRRVEEAKEVFNCMLGI 380 (512)
Q Consensus 355 ~~l~~~~~~~~~~~~a~~~~~~~~~~ 380 (512)
..+++...+.+.+=.+-+.|+.....
T Consensus 216 ~lmI~l~lh~~~Yl~v~~~Yraiy~t 241 (439)
T KOG1498|consen 216 ELMIRLGLHDRAYLNVCRSYRAIYDT 241 (439)
T ss_pred HHHHHhcccccchhhHHHHHHHHhcc
Confidence 66777666777777777777776653
No 491
>PF12069 DUF3549: Protein of unknown function (DUF3549); InterPro: IPR021936 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 340 amino acids in length. This protein has a conserved LDE sequence motif.
Probab=31.09 E-value=4e+02 Score=24.12 Aligned_cols=91 Identities=10% Similarity=0.077 Sum_probs=43.2
Q ss_pred hHHHHHHHHHccCChhHHHHHHHhcCCCCCCCcchhHHHHHHHHHhcCChhhHH-HHHHHHHHcCCCCCcchHHHHHHHH
Q 010342 106 AFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGAS-RVVYVMRKRGLTPSLVSYNSIVHGL 184 (512)
Q Consensus 106 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~-~~~~~~~~~g~~p~~~~~~~l~~~~ 184 (512)
....+.+.+++.++.+.+..+-+.+... |. ....+++.++....-.+... .+++.+... ||......++++.
T Consensus 168 GLQGIAD~~aRl~~~~~~~~l~~al~~l---P~-~vl~aL~~~LEh~~l~~~l~~~l~~~~~~~---~d~~~~~a~lRAl 240 (340)
T PF12069_consen 168 GLQGIADICARLDQEDNAQLLRKALPHL---PP-EVLYALCGCLEHQPLPDKLAEALLERLEQA---PDLELLSALLRAL 240 (340)
T ss_pred hhhHHHHHHHHhcccchHHHHHHHHhhC---Ch-HHHHHHHHHhcCCCCCHHHHHHHHHHHHcC---CCHHHHHHHHHHH
Confidence 3445666666666666555555444432 22 23333444444433333322 233333322 5666666666666
Q ss_pred hccCchhHHHHHHHHHHhC
Q 010342 185 CKHGGCMRAYQLLEEGIQF 203 (512)
Q Consensus 185 ~~~~~~~~a~~~~~~~~~~ 203 (512)
+...........+..+.+.
T Consensus 241 s~~~~~~~~~~~i~~~L~~ 259 (340)
T PF12069_consen 241 SSAPASDLVAILIDALLQS 259 (340)
T ss_pred cCCCchhHHHHHHHHHhcC
Confidence 6555444444444444443
No 492
>PF07678 A2M_comp: A-macroglobulin complement component; InterPro: IPR011626 This domain covers the complement component region of the alpha-2-macroglobulin family. The alpha-macroglobulin (aM) family of proteins includes protease inhibitors [], typified by the human tetrameric a2-macroglobulin (a2M); they belong to the MEROPS proteinase inhibitor family I39, clan IL. These protease inhibitors share several defining properties, which include (i) the ability to inhibit proteases from all catalytic classes, (ii) the presence of a 'bait region' and a thiol ester, (iii) a similar protease inhibitory mechanism and (iv) the inactivation of the inhibitory capacity by reaction of the thiol ester with small primary amines. aM protease inhibitors inhibit by steric hindrance []. The mechanism involves protease cleavage of the bait region, a segment of the aM that is particularly susceptible to proteolytic cleavage, which initiates a conformational change such that the aM collapses about the protease. In the resulting aM-protease complex, the active site of the protease is sterically shielded, thus substantially decreasing access to protein substrates. Two additional events occur as a consequence of bait region cleavage, namely (i) the h-cysteinyl-g-glutamyl thiol ester becomes highly reactive and (ii) a major conformational change exposes a conserved COOH-terminal receptor binding domain [] (RBD). RBD exposure allows the aM protease complex to bind to clearance receptors and be removed from circulation []. Tetrameric, dimeric, and, more recently, monomeric aM protease inhibitors have been identified [, ].; GO: 0005615 extracellular space; PDB: 1QSJ_D 1QQF_A 4ACQ_C 2B39_B 2WIN_H 2I07_B 2ICF_B 2XWJ_D 3G6J_B 2NOJ_C ....
Probab=31.06 E-value=3.4e+02 Score=23.23 Aligned_cols=46 Identities=9% Similarity=0.161 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 010342 10 VGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRH 57 (512)
Q Consensus 10 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 57 (512)
+.+|...++.-... ..++.+.-.+.-++...|+.+.+..+++++..
T Consensus 115 i~kA~~~L~~~~~~--~~~~Y~lAl~aYAL~la~~~~~~~~~~~~L~~ 160 (246)
T PF07678_consen 115 INKALNYLERHLDN--IQDPYTLALVAYALALAGDSPQASKLLNKLNS 160 (246)
T ss_dssp HHHHHHHHHHHHGC--TSSHHHHHHHHHHHHHTTTCHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhccc--cCCHHHHHHHHHHHHhhcccchHHHHHHHHHH
Confidence 44566666555332 33554444444555566677777777777644
No 493
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=30.82 E-value=1.8e+02 Score=19.99 Aligned_cols=14 Identities=29% Similarity=0.358 Sum_probs=5.6
Q ss_pred CCHHHHHHHHHHHH
Q 010342 435 GKIHEAVHFLYELV 448 (512)
Q Consensus 435 g~~~~a~~~~~~~~ 448 (512)
|+.+.|.+++..+.
T Consensus 50 g~~~~ar~LL~~L~ 63 (88)
T cd08819 50 GNESGARELLKRIV 63 (88)
T ss_pred CcHHHHHHHHHHhc
Confidence 33444444444333
No 494
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=30.26 E-value=4.3e+02 Score=25.85 Aligned_cols=180 Identities=11% Similarity=0.057 Sum_probs=0.0
Q ss_pred HHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHH
Q 010342 299 LKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCML 378 (512)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 378 (512)
+...+.|-+....+|...+-..+-..|...|++++|++.--..-...-+.....-+.+++ ++......+.|.
T Consensus 43 l~~Ie~lydd~sf~~remaaL~~SKvYy~LgeY~~Ai~yAL~agdrfl~D~~S~y~etiv--------~k~iem~vh~~~ 114 (926)
T COG5116 43 LRYIEALYDDDSFDPREMAALCLSKVYYVLGEYQQAIEYALRAGDRFLVDDGSFYYETIV--------YKSIEMYVHMMD 114 (926)
T ss_pred hhHHHHhhccCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHhcCCceeecCCccceehhH--------HhHHHHHHHHHH
Q ss_pred hCCCCCC--------hHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCC-------CCCHHhHHHHHHHHHhcCCHHHHH-H
Q 010342 379 GIGVVAD--------STTYAIVIDGLCESNQLDEAKRFWDDIVWPSN-------IHDNYVYAAMIKGLCRSGKIHEAV-H 442 (512)
Q Consensus 379 ~~~~~~~--------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-------~~~~~~~~~l~~~~~~~g~~~~a~-~ 442 (512)
+.-..++ ..++..++.-|.....+.-+..+--+....++ ..|....+.++......+.-++-. +
T Consensus 115 ~~y~~~~~d~iD~~l~~v~e~i~~kc~~~se~~~~lgIa~eg~rldiie~~l~~~~d~di~~ylL~Lait~v~~~~fr~~ 194 (926)
T COG5116 115 SAYIGGDKDIIDRILDFVLEVIGAKCVDDSEIGYLLGIAAEGLRLDIIEKYLSDGNDCDIINYLLDLAITLVEEEGFRKE 194 (926)
T ss_pred HhhhCCCcccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHhhhHHHHHH
Q ss_pred HHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 010342 443 FLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNG 486 (512)
Q Consensus 443 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 486 (512)
+++.+.+.++.....-|-.++.++...++.+.|.++++++.+.+
T Consensus 195 ilr~l~~~~~~~~~pdyf~v~k~vv~LnDa~~a~~L~~kL~~en 238 (926)
T COG5116 195 ILRMLAEIGPGKPKPDYFYVIKAVVYLNDAEKAKALIEKLVKEN 238 (926)
T ss_pred HHHHHHHhcCCCCCCcEEEEeEEEEEeccHHHHHHHHHHHHhhh
No 495
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=30.11 E-value=1.5e+02 Score=18.74 Aligned_cols=47 Identities=21% Similarity=0.220 Sum_probs=20.7
Q ss_pred HccCChhHHHHHHHhcCCCCCCCcchhHHHHHHHH-----HhcCChhhHHHH
Q 010342 115 CREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSL-----CRSGRNHGASRV 161 (512)
Q Consensus 115 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-----~~~~~~~~a~~~ 161 (512)
...|++=+|-++++.+-.....+....+..+|... .+.|+...|..+
T Consensus 10 ~n~g~f~EaHEvlE~~W~~~~~~~~~~lqglIq~A~a~~h~~~gn~~gA~~l 61 (62)
T PF03745_consen 10 FNAGDFFEAHEVLEELWKAAPGPERDFLQGLIQLAVALYHLRRGNPRGARRL 61 (62)
T ss_dssp HHTT-HHHHHHHHHHHCCCT-CCHHHHHHHHHHHHHHHHHHHCTSHHHHHHH
T ss_pred HcCCCHHHhHHHHHHHHHHCCcchHHHHHHHHHHHHHHHHHHhCCHHHHHHh
Confidence 34555556666665554433223444444444332 234555444443
No 496
>PF08542 Rep_fac_C: Replication factor C C-terminal domain; InterPro: IPR013748 Replication factor C (RFC) is a multimeric AAA+ protein complex that loads the DNA polymerase processivity clamp PCNA (Proliferating Cell Nuclear Antigen) onto DNA using ATP to drive the reaction []. PCNA functions at multiple levels in directing DNA metabolic pathways []. When bound to DNA, PCNA organises various proteins involved in DNA replication, DNA repair, DNA modification, and chromatin modelling. Replication factor C consists of five subunits in a spiral arrangement: Rfc1, Rfc2, Rfc3, Rfc4, and Rfc5 subunits. Rfc1 and Rfc2 load the PCNA sliding clamp onto DNA, while Rfc3 binds ATP and also acts as a checkpoint sensor. The RFC complex contains four ATP sites (sites A, B, C, and D) located at subunit interfaces. In each ATP site, an arginine residue from one subunit is located near the gamma-phosphate of ATP bound in the adjacent subunit. These arginine residues act as "arginine fingers" that can potentially perform two functions: sensing that ATP is bound and catalyzing ATP hydrolysis []. This entry represents the core domain found in Rfc1-5.; GO: 0003689 DNA clamp loader activity, 0005524 ATP binding, 0006260 DNA replication, 0005663 DNA replication factor C complex; PDB: 1SXJ_B 2CHG_B 2CHV_F 2CHQ_C 1IQP_A.
Probab=29.99 E-value=1.4e+02 Score=20.25 Aligned_cols=49 Identities=18% Similarity=0.209 Sum_probs=30.6
Q ss_pred CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhc
Q 010342 419 HDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKL 469 (512)
Q Consensus 419 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 469 (512)
|+......++..+.. ++++++...+.++...|+.++ .....+.......
T Consensus 3 p~~~~i~~i~~~~~~-~~~~~~~~~~~~l~~~G~s~~-~Il~~l~~~l~~~ 51 (89)
T PF08542_consen 3 PPPEVIEEILESCLN-GDFKEARKKLYELLVEGYSAS-DILKQLHEVLVES 51 (89)
T ss_dssp --HHHHHHHHHHHHH-TCHHHHHHHHHHHHHTT--HH-HHHHHHHHHHHTS
T ss_pred CCHHHHHHHHHHHHh-CCHHHHHHHHHHHHHcCCCHH-HHHHHHHHHHHHh
Confidence 344455566666654 589999999999888875543 4555666666655
No 497
>KOG3677 consensus RNA polymerase I-associated factor - PAF67 [Translation, ribosomal structure and biogenesis; Transcription]
Probab=29.28 E-value=4.8e+02 Score=24.38 Aligned_cols=61 Identities=15% Similarity=0.001 Sum_probs=37.1
Q ss_pred HhHHHHHHHHHccCChhHHHHHHHhcCCC--CCCCcc-hhHHHHHHHHHhcCChhhHHHHHHHHH
Q 010342 105 AAFANLVDSLCREGYVNEVFRIAEDMPQG--KSVNEE-FACGHMIDSLCRSGRNHGASRVVYVMR 166 (512)
Q Consensus 105 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~ 166 (512)
.+.-.|++.+.-.|+.....+.++.+++. +-.|.- .+ --+.-+|.-.+++.+|.+.|-...
T Consensus 236 fsL~GLlR~H~lLgDhQat~q~idi~pk~iy~t~p~c~VT-Y~VGFayLmmrryadai~~F~niL 299 (525)
T KOG3677|consen 236 FSLLGLLRMHILLGDHQATSQILDIMPKEIYGTEPMCRVT-YQVGFAYLMMRRYADAIRVFLNIL 299 (525)
T ss_pred HHHHHHHHHHHHhhhhHhhhhhhhcCchhhcCcccceeEe-eehhHHHHHHHHHHHHHHHHHHHH
Confidence 34455677777778877777777777654 222222 22 235566667777888877776554
No 498
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=29.18 E-value=4e+02 Score=23.44 Aligned_cols=173 Identities=13% Similarity=0.042 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHhcC--------CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCCHH
Q 010342 261 TELLNVLVFMLQTQ--------CQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQ 332 (512)
Q Consensus 261 ~~a~~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 332 (512)
+..-.++..+.+.| ++.|...++.++.- +..++++--+-+++..+.++-......+..+...|++.++.+
T Consensus 55 ~~maplYkyL~E~~n~kt~a~~ikfD~~~~n~l~kk--neeki~Elde~i~~~eedngE~e~~ea~~n~aeyY~qi~D~~ 132 (412)
T COG5187 55 KCMAPLYKYLAEKGNPKTSASVIKFDRGRMNTLLKK--NEEKIEELDERIREKEEDNGETEGSEADRNIAEYYCQIMDIQ 132 (412)
T ss_pred hhhhHHHHHHHhccCCcccchheehhhHHHHHHHHh--hHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhhh
Q ss_pred HHHHHHHhhccc---CCCCCChhhHHH-HHHHHHccCCHHHHHHHHHHHHhCCCCCChH--hHHHHHHHHHhcCCHHHHH
Q 010342 333 EALNLLYQVMPQ---RGYSPGIVTYNA-VLRGLFRLRRVEEAKEVFNCMLGIGVVADST--TYAIVIDGLCESNQLDEAK 406 (512)
Q Consensus 333 ~a~~~~~~~~~~---~~~~~~~~~~~~-l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~a~ 406 (512)
.+.++..+.|.. .|.+.|....-. +.-.|....-.++.++..+.|.+.|...+.. --..-.-.+....++.+|-
T Consensus 133 ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrNRyK~Y~Gi~~m~~RnFkeAa 212 (412)
T COG5187 133 NGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERRNRYKVYKGIFKMMRRNFKEAA 212 (412)
T ss_pred hHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhhhHHHHHHHHHHHHHhhHHHH
Q ss_pred HHHHHhhcCCCCCCHHhHHHHHHHHHhcC
Q 010342 407 RFWDDIVWPSNIHDNYVYAAMIKGLCRSG 435 (512)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 435 (512)
.++-.....--......|...++-..-+|
T Consensus 213 ~Ll~d~l~tF~S~El~sY~~~vrYa~~~G 241 (412)
T COG5187 213 ILLSDILPTFESSELISYSRAVRYAIFCG 241 (412)
T ss_pred HHHHHHhccccccccccHHHHHHHHHHhh
No 499
>PRK09462 fur ferric uptake regulator; Provisional
Probab=29.00 E-value=2.7e+02 Score=21.43 Aligned_cols=33 Identities=15% Similarity=0.023 Sum_probs=15.0
Q ss_pred chhHHHHHHHHHHhCCCCCchhhHHHHHHHHhc
Q 010342 189 GCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCG 221 (512)
Q Consensus 189 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 221 (512)
..-.|.++++.+.+.+...+..|.--.+..+..
T Consensus 32 ~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e 64 (148)
T PRK09462 32 HHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDD 64 (148)
T ss_pred CCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHH
Confidence 345555555555554433344333333333333
No 500
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=28.87 E-value=4.6e+02 Score=24.12 Aligned_cols=56 Identities=20% Similarity=0.115 Sum_probs=32.7
Q ss_pred HHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHH-hcCCHHHHHHHHHHhh
Q 010342 358 LRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLC-ESNQLDEAKRFWDDIV 413 (512)
Q Consensus 358 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~a~~~~~~~~ 413 (512)
+..+.+.|-+..|.++.+-+...+..-|+.....+|+.|+ +.++++--.++.+...
T Consensus 110 i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~ 166 (360)
T PF04910_consen 110 IQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPL 166 (360)
T ss_pred HHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHh
Confidence 3445666777777777777766553335555555555553 4555665666655543
Done!