BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010343
(512 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1PW4|A Chain A, Crystal Structure Of The Glycerol-3-Phosphate Transporter
From E.Coli
Length = 451
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 74/178 (41%), Gaps = 18/178 (10%)
Query: 340 LLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLV-----SKGLSVTTV 394
+L W PTY +V HF L +S L L GW++D + + G+ T+
Sbjct: 271 ILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTL 330
Query: 395 RKIMQSIGFLGPAFFLTQLSHVDSPAMAVLCMACSQGTDAFSQSGLYSNHQ-DIAPRY-S 452
I + ++ PA +P + ++CM G + L H ++AP+ +
Sbjct: 331 VTIATIVYWMNPA---------GNPTVDMICMIVI-GFLIYGPVMLIGLHALELAPKKAA 380
Query: 453 GVLLGLSNTAGVLAG-VFGTAATGYILQHGSWDDVFKVSVGLYLVGTAVWNLFSTGEK 509
G G + G L G V +A GY + WD F V +G ++ + + GEK
Sbjct: 381 GTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGEK 438
>pdb|3O7P|A Chain A, Crystal Structure Of The E.Coli Fucose:proton Symporter,
Fucp (N162a)
Length = 438
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 58/135 (42%), Gaps = 2/135 (1%)
Query: 122 NMSIAILPMSAE-FNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWS 180
N++ +LP + F GLIQS+F++GY + I GI + KA + G+ ++
Sbjct: 43 NLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYA 102
Query: 181 IATALT-PVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGM 239
+ AL P A + LV + G G A N ++ P + L L +
Sbjct: 103 LGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFA 162
Query: 240 YLGSVTGLAFSPFLI 254
G++ + F LI
Sbjct: 163 SFGAIIAVVFGQSLI 177
>pdb|3O7Q|A Chain A, Crystal Structure Of A Major Facilitator Superfamily (Mfs)
Transporter, Fucp, In The Outward Conformation
Length = 438
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 58/135 (42%), Gaps = 2/135 (1%)
Query: 122 NMSIAILPMSAE-FNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWS 180
N++ +LP + F GLIQS+F++GY + I GI + KA + G+ ++
Sbjct: 43 NLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYA 102
Query: 181 IATALT-PVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGM 239
+ AL P A + LV + G G A N ++ P + L L +
Sbjct: 103 LGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFN 162
Query: 240 YLGSVTGLAFSPFLI 254
G++ + F LI
Sbjct: 163 SFGAIIAVVFGQSLI 177
>pdb|3CSQ|A Chain A, Crystal And Cryoem Structural Studies Of A Cell Wall
Degrading Enzyme In The Bacteriophage Phi29 Tail
pdb|3CSQ|B Chain B, Crystal And Cryoem Structural Studies Of A Cell Wall
Degrading Enzyme In The Bacteriophage Phi29 Tail
pdb|3CSQ|C Chain C, Crystal And Cryoem Structural Studies Of A Cell Wall
Degrading Enzyme In The Bacteriophage Phi29 Tail
pdb|3CSQ|D Chain D, Crystal And Cryoem Structural Studies Of A Cell Wall
Degrading Enzyme In The Bacteriophage Phi29 Tail
Length = 334
Score = 31.6 bits (70), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 20/89 (22%), Positives = 39/89 (43%), Gaps = 5/89 (5%)
Query: 157 IAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFL----LVVRVFMGIGEGVAM 212
I G+W + G LGFG+V W+ A+ A GLP+ + R+ +
Sbjct: 48 INPGLWQNLDEGNTSLGFGLVQWTPASNYINWANSQGLPYKNMDSELKRIIWEVNNNAQW 107
Query: 213 PAMNNI-LSKWVPVAERSRSLALVYSGMY 240
+ ++ +++ + R LA+++ Y
Sbjct: 108 INLRDMTFKEYIKSTKTPRELAMIFLASY 136
>pdb|3CSR|A Chain A, Crystal And Cryoem Structural Studies Of A Cell Wall
Degrading Enzyme In The Bacteriophage Phi29 Tail
pdb|3CSZ|A Chain A, Crystal And Cryoem Structural Studies Of A Cell Wall
Degrading Enzyme In The Bacteriophage Phi29 Tail
pdb|3CT0|A Chain A, Crystal And Cryoem Structural Studies Of A Cell Wall
Degrading Enzyme In The Bacteriophage Phi29 Tail
pdb|3CT1|A Chain A, Crystal And Cryoem Structural Studies Of A Cell Wall
Degrading Enzyme In The Bacteriophage Phi29 Tail
pdb|3CT5|A Chain A, Crystal And Cryoem Structural Studies Of A Cell Wall
Degrading Enzyme In The Bacteriophage Phi29 Tail
Length = 159
Score = 30.8 bits (68), Expect = 1.7, Method: Composition-based stats.
Identities = 15/42 (35%), Positives = 22/42 (52%)
Query: 155 TQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPF 196
+ I G+W + G LGFG+V W+ A+ A GLP+
Sbjct: 46 STINPGLWQNLDEGNTSLGFGLVQWTPASNYINWANSQGLPY 87
>pdb|2J7M|A Chain A, Characterization Of A Family 32 Cbm
Length = 149
Score = 29.6 bits (65), Expect = 3.9, Method: Composition-based stats.
Identities = 11/26 (42%), Positives = 14/26 (53%)
Query: 260 PSVFYSFGSLGTVWFTVWLSKAHSSP 285
P+ F S G + T W + W S AH P
Sbjct: 26 PASFASDGDMNTFWHSKWSSPAHEGP 51
>pdb|2J1A|A Chain A, Structure Of Cbm32 From Clostridium Perfringens Beta-N-
Acetylhexosaminidase Gh84c In Complex With Galactose
pdb|2J1E|A Chain A, High Resolution Crystal Structure Of Cbm32 From A
N-Acetyl- Beta-Hexosaminidase In Complex With Lacnac
Length = 150
Score = 29.6 bits (65), Expect = 3.9, Method: Composition-based stats.
Identities = 11/26 (42%), Positives = 14/26 (53%)
Query: 260 PSVFYSFGSLGTVWFTVWLSKAHSSP 285
P+ F S G + T W + W S AH P
Sbjct: 27 PASFASDGDMNTFWHSKWSSPAHEGP 52
>pdb|4H0A|A Chain A, Crystal Structure Of A Hypothetical Protein (Sav1118) From
Staphylococcus Aureus Subsp. Aureus Mu50 At 1.90 A
Resolution
pdb|4H0A|B Chain B, Crystal Structure Of A Hypothetical Protein (Sav1118) From
Staphylococcus Aureus Subsp. Aureus Mu50 At 1.90 A
Resolution
Length = 323
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 3/72 (4%)
Query: 442 SNHQDIAPRYSGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFKVSVGLYLVGT--- 498
+NH + GV + VL FG A Y + G + VFK Y+V T
Sbjct: 29 NNHAENPKPKEGVGTWVGKDIKVLTSKFGQADRVYPFRDGYKNYVFKDKNSYYIVSTKRE 88
Query: 499 AVWNLFSTGEKV 510
+ ++++TGEKV
Sbjct: 89 EIVSVYATGEKV 100
>pdb|2V5D|A Chain A, Structure Of A Family 84 Glycoside Hydrolase And A Family
32 Carbohydrate-Binding Module In Tandem From
Clostridium Perfringens
Length = 737
Score = 29.3 bits (64), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 14/26 (53%)
Query: 260 PSVFYSFGSLGTVWFTVWLSKAHSSP 285
P+ F S G + T W + W S AH P
Sbjct: 614 PASFASDGDMNTFWHSKWSSPAHEGP 639
>pdb|2IUM|A Chain A, Structure Of The C-Terminal Head Domain Of The Avian
Adenovirus Celo Long Fibre (C2 Crystal Form)
pdb|2IUM|B Chain B, Structure Of The C-Terminal Head Domain Of The Avian
Adenovirus Celo Long Fibre (C2 Crystal Form)
pdb|2IUM|C Chain C, Structure Of The C-Terminal Head Domain Of The Avian
Adenovirus Celo Long Fibre (C2 Crystal Form)
pdb|2IUN|A Chain A, Structure Of The C-Terminal Head Domain Of The Avian
Adenovirus Celo Long Fibre (P21 Crystal Form)
pdb|2IUN|B Chain B, Structure Of The C-Terminal Head Domain Of The Avian
Adenovirus Celo Long Fibre (P21 Crystal Form)
pdb|2IUN|C Chain C, Structure Of The C-Terminal Head Domain Of The Avian
Adenovirus Celo Long Fibre (P21 Crystal Form)
pdb|2IUN|D Chain D, Structure Of The C-Terminal Head Domain Of The Avian
Adenovirus Celo Long Fibre (P21 Crystal Form)
pdb|2IUN|E Chain E, Structure Of The C-Terminal Head Domain Of The Avian
Adenovirus Celo Long Fibre (P21 Crystal Form)
pdb|2IUN|F Chain F, Structure Of The C-Terminal Head Domain Of The Avian
Adenovirus Celo Long Fibre (P21 Crystal Form)
Length = 248
Score = 28.9 bits (63), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 11/81 (13%)
Query: 242 GSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFT-----VWLSKAHSSPAEDPQLRPAEK 296
G+ T L FSP + +G + + S+ + W+ V +K H P QL+ A
Sbjct: 134 GATTAL-FSP---NPYGSLNTITTLPSIASDWYVPESNLVTYTKIHFKPTGSQQLQLASG 189
Query: 297 KLIVSSCASKEPVKTIPWGLI 317
+L+V+ A+K PV+T + LI
Sbjct: 190 ELVVA--AAKSPVQTTKYELI 208
>pdb|1Z7L|A Chain A, Crystal Structure Of Fragment Of Mouse
Ubiquitin-Activating Enzyme
pdb|1Z7L|B Chain B, Crystal Structure Of Fragment Of Mouse
Ubiquitin-Activating Enzyme
pdb|1Z7L|C Chain C, Crystal Structure Of Fragment Of Mouse
Ubiquitin-Activating Enzyme
Length = 276
Score = 28.5 bits (62), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 12/43 (27%), Positives = 22/43 (51%)
Query: 295 EKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGT 337
E+ L ++ E ++ + L+L +P W V+ CH+W T
Sbjct: 59 ERTLRLAGTQPLEVLEAVQRSLVLQRPQTWGDCVTWACHHWHT 101
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.136 0.438
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,522,518
Number of Sequences: 62578
Number of extensions: 584280
Number of successful extensions: 1241
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1231
Number of HSP's gapped (non-prelim): 14
length of query: 512
length of database: 14,973,337
effective HSP length: 103
effective length of query: 409
effective length of database: 8,527,803
effective search space: 3487871427
effective search space used: 3487871427
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 54 (25.4 bits)