BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010344
(512 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2P2Q|A Chain A, Acetyl-Coa Synthetase, R584e Mutation
pdb|2P2Q|B Chain B, Acetyl-Coa Synthetase, R584e Mutation
Length = 652
Score = 140 bits (354), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 139/523 (26%), Positives = 226/523 (43%), Gaps = 52/523 (9%)
Query: 4 RLVANALDTMFSKGDAIAIDMPMTVHAVIIYLAIILAGYVVVSIADSFAAREIATRLRVS 63
R LD KGD +AI MPM A + LA G V I F+ +A R+ S
Sbjct: 119 RFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGRIIDS 178
Query: 64 KAKGIFTQDFILRGGRKFPLYSKVAEAGPLK---------AVVLPVIGDDVGIQLRQQDV 114
++ + T D +R GR PL V +A LK +VL G D+ Q +D+
Sbjct: 179 SSRLVITADEGVRAGRSIPLKKNVDDA--LKNPNVTSVEHVIVLKRTGSDIDWQ-EGRDL 235
Query: 115 SWKDFLSCVDYHPGPKYYPPVYRPVDSVINILFSSGTTGEPKAIPWTQLSPIRCAAEAWG 174
W+D + P++ P D + IL++SG+TG+PK + T + AA +
Sbjct: 236 WWRDLIEKA----SPEHQPEAMNAEDPLF-ILYTSGSTGKPKGVLHTTGGYLVYAATTFK 290
Query: 175 HI-DMKVGDVYCWPTNLGWVMG-PIILFSSFLSGAALALYHGSPLERSFGKFVQ---DSG 229
++ D GD+Y ++GWV G +L+ GA ++ G P + + Q
Sbjct: 291 YVFDYHPGDIYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQ 350
Query: 230 VSVLGTVPSLVKAW--KNTNCLQGLDWTKIRSFASTGETSNVDDDLWLASKAYYK--PII 285
V++L T P+ ++A + ++G D + +R S GE N + W K + P++
Sbjct: 351 VNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVV 410
Query: 286 ECCGGTELASSYIQGSMLQPQAFG-AFSTATMTTGF-----VILDELGVPYPDDQPCVGE 339
+ TE G M+ P + T F ++D G +P + G
Sbjct: 411 DTWWQTETG-----GFMITPLPGAIELKAGSATRPFFGVQPALVDNEG--HPQEGATEGN 463
Query: 340 VGLFPLYLGATDRLLNADH---EEVYFSGMPIYKGMHLRRHGDIIKRTVGGYIIVQGRAD 396
+ + + G R L DH E+ YFS +K M+ GD +R GY + GR D
Sbjct: 464 LVITDSWPGQA-RTLFGDHERFEQTYFS---TFKNMYFS--GDGARRDEDGYYWITGRVD 517
Query: 397 DTMNLGGIKTSSVEIERVCDGADESILETAAISVSPAGGGPEVLVICVVLKKGFTSQPVD 456
D +N+ G + + EIE A I E A + + A G + + V L G +P
Sbjct: 518 DVLNVSGHRLGTAEIESAL-VAHPKIAEAAVVGIPHAIKG-QAIYAYVTLNHG--EEPSP 573
Query: 457 KLKMIFSKAIQRNLNPLFKVSLVKIVLEFPRTASNKLLRRVLK 499
+L +++ + PL ++ P+T S K++RR+L+
Sbjct: 574 ELYAEVRNWVEKEIGPLATPDVLHWTDSLPKTRSGKIMRRILR 616
>pdb|2P2F|A Chain A, Acetyl-coa Synthetase, Wild-type With Acetate, Amp, And
Coa Bound
pdb|2P2F|B Chain B, Acetyl-coa Synthetase, Wild-type With Acetate, Amp, And
Coa Bound
Length = 652
Score = 140 bits (353), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 136/520 (26%), Positives = 223/520 (42%), Gaps = 46/520 (8%)
Query: 4 RLVANALDTMFSKGDAIAIDMPMTVHAVIIYLAIILAGYVVVSIADSFAAREIATRLRVS 63
R LD KGD +AI MPM A + LA G V I F+ +A R+ S
Sbjct: 119 RFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGRIIDS 178
Query: 64 KAKGIFTQDFILRGGRKFPLYSKVAEAGPLK---------AVVLPVIGDDVGIQLRQQDV 114
++ + T D +R GR PL V +A LK +VL G D+ Q +D+
Sbjct: 179 SSRLVITADEGVRAGRSIPLKKNVDDA--LKNPNVTSVEHVIVLKRTGSDIDWQ-EGRDL 235
Query: 115 SWKDFLSCVDYHPGPKYYPPVYRPVDSVINILFSSGTTGEPKAIPWTQLSPIRCAAEAWG 174
W+D + P++ P D + IL++SG+TG+PK + T + AA +
Sbjct: 236 WWRDLIEKA----SPEHQPEAMNAEDPLF-ILYTSGSTGKPKGVLHTTGGYLVYAATTFK 290
Query: 175 HI-DMKVGDVYCWPTNLGWVMG-PIILFSSFLSGAALALYHGSPLERSFGKFVQ---DSG 229
++ D GD+Y ++GWV G +L+ GA ++ G P + + Q
Sbjct: 291 YVFDYHPGDIYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQ 350
Query: 230 VSVLGTVPSLVKAW--KNTNCLQGLDWTKIRSFASTGETSNVDDDLWLASKAYYK--PII 285
V++L T P+ ++A + ++G D + +R S GE N + W K + P++
Sbjct: 351 VNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVV 410
Query: 286 ECCGGTELASSYIQGSMLQPQAFG-AFSTATMTTGF-----VILDELGVPYPDDQPCVGE 339
+ TE G M+ P + T F ++D G +P + G
Sbjct: 411 DTWWQTETG-----GFMITPLPGAIELKAGSATRPFFGVQPALVDNEG--HPQEGATEGN 463
Query: 340 VGLFPLYLGATDRLLNADHEEVYFSGMPIYKGMHLRRHGDIIKRTVGGYIIVQGRADDTM 399
+ + + G R L DHE + +K M+ GD +R GY + GR DD +
Sbjct: 464 LVITDSWPGQA-RTLFGDHERFEQTYFSTFKNMYFS--GDGARRDEDGYYWITGRVDDVL 520
Query: 400 NLGGIKTSSVEIERVCDGADESILETAAISVSPAGGGPEVLVICVVLKKGFTSQPVDKLK 459
N+ G + + EIE A I E A + + A G + + V L G +P +L
Sbjct: 521 NVSGHRLGTAEIESAL-VAHPKIAEAAVVGIPHAIKG-QAIYAYVTLNHG--EEPSPELY 576
Query: 460 MIFSKAIQRNLNPLFKVSLVKIVLEFPRTASNKLLRRVLK 499
+++ + PL ++ P+T S K++RR+L+
Sbjct: 577 AEVRNWVRKEIGPLATPDVLHWTDSLPKTRSGKIMRRILR 616
>pdb|2P2B|A Chain A, Acetyl-coa Synthetase, V386a Mutation
pdb|2P2B|B Chain B, Acetyl-coa Synthetase, V386a Mutation
Length = 652
Score = 140 bits (353), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 139/523 (26%), Positives = 226/523 (43%), Gaps = 52/523 (9%)
Query: 4 RLVANALDTMFSKGDAIAIDMPMTVHAVIIYLAIILAGYVVVSIADSFAAREIATRLRVS 63
R LD KGD +AI MPM A + LA G V I F+ +A R+ S
Sbjct: 119 RFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGRIIDS 178
Query: 64 KAKGIFTQDFILRGGRKFPLYSKVAEAGPLK---------AVVLPVIGDDVGIQLRQQDV 114
++ + T D +R GR PL V +A LK +VL G D+ Q +D+
Sbjct: 179 SSRLVITADEGVRAGRSIPLKKNVDDA--LKNPNVTSVEHVIVLKRTGSDIDWQ-EGRDL 235
Query: 115 SWKDFLSCVDYHPGPKYYPPVYRPVDSVINILFSSGTTGEPKAIPWTQLSPIRCAAEAWG 174
W+D + P++ P D + IL++SG+TG+PK + T + AA +
Sbjct: 236 WWRDLIEKA----SPEHQPEAMNAEDPLF-ILYTSGSTGKPKGVLHTTGGYLVYAATTFK 290
Query: 175 HI-DMKVGDVYCWPTNLGWVMG-PIILFSSFLSGAALALYHGSPLERSFGKFVQ---DSG 229
++ D GD+Y ++GWV G +L+ GA ++ G P + + Q
Sbjct: 291 YVFDYHPGDIYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQ 350
Query: 230 VSVLGTVPSLVKAW--KNTNCLQGLDWTKIRSFASTGETSNVDDDLWLASKAYYK--PII 285
V++L T P+ ++A + ++G D + +R S GE N + W K + P++
Sbjct: 351 VNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSAGEPINPEAWEWYWKKIGKEKCPVV 410
Query: 286 ECCGGTELASSYIQGSMLQPQAFG-AFSTATMTTGF-----VILDELGVPYPDDQPCVGE 339
+ TE G M+ P + T F ++D G +P + G
Sbjct: 411 DTWWQTETG-----GFMITPLPGAIELKAGSATRPFFGVQPALVDNEG--HPQEGATEGN 463
Query: 340 VGLFPLYLGATDRLLNADH---EEVYFSGMPIYKGMHLRRHGDIIKRTVGGYIIVQGRAD 396
+ + + G R L DH E+ YFS +K M+ GD +R GY + GR D
Sbjct: 464 LVITDSWPGQA-RTLFGDHERFEQTYFS---TFKNMYFS--GDGARRDEDGYYWITGRVD 517
Query: 397 DTMNLGGIKTSSVEIERVCDGADESILETAAISVSPAGGGPEVLVICVVLKKGFTSQPVD 456
D +N+ G + + EIE A I E A + + A G + + V L G +P
Sbjct: 518 DVLNVSGHRLGTAEIESAL-VAHPKIAEAAVVGIPHAIKG-QAIYAYVTLNHG--EEPSP 573
Query: 457 KLKMIFSKAIQRNLNPLFKVSLVKIVLEFPRTASNKLLRRVLK 499
+L +++ + PL ++ P+T S K++RR+L+
Sbjct: 574 ELYAEVRNWVRKEIGPLATPDVLHWTDSLPKTRSGKIMRRILR 616
>pdb|2P20|A Chain A, Acetyl-Coa Synthetase, R584a Mutation
pdb|2P20|B Chain B, Acetyl-Coa Synthetase, R584a Mutation
Length = 652
Score = 139 bits (351), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 139/523 (26%), Positives = 225/523 (43%), Gaps = 52/523 (9%)
Query: 4 RLVANALDTMFSKGDAIAIDMPMTVHAVIIYLAIILAGYVVVSIADSFAAREIATRLRVS 63
R LD KGD +AI MPM A + LA G V I F+ +A R+ S
Sbjct: 119 RFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGRIIDS 178
Query: 64 KAKGIFTQDFILRGGRKFPLYSKVAEAGPLK---------AVVLPVIGDDVGIQLRQQDV 114
++ + T D +R GR PL V +A LK +VL G D+ Q +D+
Sbjct: 179 SSRLVITADEGVRAGRSIPLKKNVDDA--LKNPNVTSVEHVIVLKRTGSDIDWQ-EGRDL 235
Query: 115 SWKDFLSCVDYHPGPKYYPPVYRPVDSVINILFSSGTTGEPKAIPWTQLSPIRCAAEAWG 174
W+D + P++ P D + IL++SG+TG+PK + T + AA +
Sbjct: 236 WWRDLIEKA----SPEHQPEAMNAEDPLF-ILYTSGSTGKPKGVLHTTGGYLVYAATTFK 290
Query: 175 HI-DMKVGDVYCWPTNLGWVMG-PIILFSSFLSGAALALYHGSPLERSFGKFVQ---DSG 229
++ D GD+Y ++GWV G +L+ GA ++ G P + + Q
Sbjct: 291 YVFDYHPGDIYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQ 350
Query: 230 VSVLGTVPSLVKAW--KNTNCLQGLDWTKIRSFASTGETSNVDDDLWLASKAYYK--PII 285
V++L T P+ ++A + ++G D + +R S GE N + W K + P++
Sbjct: 351 VNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVV 410
Query: 286 ECCGGTELASSYIQGSMLQPQAFG-AFSTATMTTGF-----VILDELGVPYPDDQPCVGE 339
+ TE G M+ P + T F ++D G +P + G
Sbjct: 411 DTWWQTETG-----GFMITPLPGAIELKAGSATRPFFGVQPALVDNEG--HPQEGATEGN 463
Query: 340 VGLFPLYLGATDRLLNADH---EEVYFSGMPIYKGMHLRRHGDIIKRTVGGYIIVQGRAD 396
+ + + G R L DH E+ YFS +K M+ GD +R GY + GR D
Sbjct: 464 LVITDSWPGQA-RTLFGDHERFEQTYFS---TFKNMYFS--GDGARRDEDGYYWITGRVD 517
Query: 397 DTMNLGGIKTSSVEIERVCDGADESILETAAISVSPAGGGPEVLVICVVLKKGFTSQPVD 456
D +N+ G + + EIE A I E A + + A G + + V L G +P
Sbjct: 518 DVLNVSGHRLGTAEIESAL-VAHPKIAEAAVVGIPHAIKG-QAIYAYVTLNHG--EEPSP 573
Query: 457 KLKMIFSKAIQRNLNPLFKVSLVKIVLEFPRTASNKLLRRVLK 499
+L + + + PL ++ P+T S K++RR+L+
Sbjct: 574 ELYAEVRNWVAKEIGPLATPDVLHWTDSLPKTRSGKIMRRILR 616
>pdb|2P2J|A Chain A, Acetyl-Coa Synthetase, K609a Mutation
pdb|2P2J|B Chain B, Acetyl-Coa Synthetase, K609a Mutation
Length = 652
Score = 138 bits (347), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 138/523 (26%), Positives = 225/523 (43%), Gaps = 52/523 (9%)
Query: 4 RLVANALDTMFSKGDAIAIDMPMTVHAVIIYLAIILAGYVVVSIADSFAAREIATRLRVS 63
R LD KGD +AI MPM A + LA G V I F+ +A R+ S
Sbjct: 119 RFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGRIIDS 178
Query: 64 KAKGIFTQDFILRGGRKFPLYSKVAEAGPLK---------AVVLPVIGDDVGIQLRQQDV 114
++ + T D +R GR PL V +A LK +VL G D+ Q +D+
Sbjct: 179 SSRLVITADEGVRAGRSIPLKKNVDDA--LKNPNVTSVEHVIVLKRTGSDIDWQ-EGRDL 235
Query: 115 SWKDFLSCVDYHPGPKYYPPVYRPVDSVINILFSSGTTGEPKAIPWTQLSPIRCAAEAWG 174
W+D + P++ P D + IL++SG+TG+PK + T + AA +
Sbjct: 236 WWRDLIEKA----SPEHQPEAMNAEDPLF-ILYTSGSTGKPKGVLHTTGGYLVYAATTFK 290
Query: 175 HI-DMKVGDVYCWPTNLGWVMG-PIILFSSFLSGAALALYHGSPLERSFGKFVQ---DSG 229
++ D GD+Y ++GWV G +L+ GA ++ G P + + Q
Sbjct: 291 YVFDYHPGDIYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQ 350
Query: 230 VSVLGTVPSLVKAW--KNTNCLQGLDWTKIRSFASTGETSNVDDDLWLASKAYYK--PII 285
V++L T P+ ++A + ++G D + +R S GE N + W K + P++
Sbjct: 351 VNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVV 410
Query: 286 ECCGGTELASSYIQGSMLQPQAFG-AFSTATMTTGF-----VILDELGVPYPDDQPCVGE 339
+ TE G M+ P + T F ++D G +P + G
Sbjct: 411 DTWWQTETG-----GFMITPLPGAIELKAGSATRPFFGVQPALVDNEG--HPQEGATEGN 463
Query: 340 VGLFPLYLGATDRLLNADH---EEVYFSGMPIYKGMHLRRHGDIIKRTVGGYIIVQGRAD 396
+ + + G R L DH E+ YFS +K M+ GD +R GY + GR D
Sbjct: 464 LVITDSWPGQA-RTLFGDHERFEQTYFS---TFKNMYFS--GDGARRDEDGYYWITGRVD 517
Query: 397 DTMNLGGIKTSSVEIERVCDGADESILETAAISVSPAGGGPEVLVICVVLKKGFTSQPVD 456
D +N+ G + + EIE A I E A + + A G + + V L G +P
Sbjct: 518 DVLNVSGHRLGTAEIESAL-VAHPKIAEAAVVGIPHAIKG-QAIYAYVTLNHG--EEPSP 573
Query: 457 KLKMIFSKAIQRNLNPLFKVSLVKIVLEFPRTASNKLLRRVLK 499
+L +++ + PL ++ P+T S ++RR+L+
Sbjct: 574 ELYAEVRNWVRKEIGPLATPDVLHWTDSLPKTRSGAIMRRILR 616
>pdb|2P2M|A Chain A, Acetyl-Coa Synthetase, R194a Mutation
pdb|2P2M|B Chain B, Acetyl-Coa Synthetase, R194a Mutation
Length = 652
Score = 137 bits (345), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 138/523 (26%), Positives = 225/523 (43%), Gaps = 52/523 (9%)
Query: 4 RLVANALDTMFSKGDAIAIDMPMTVHAVIIYLAIILAGYVVVSIADSFAAREIATRLRVS 63
R LD KGD +AI MPM A + LA G V I F+ +A R+ S
Sbjct: 119 RFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGRIIDS 178
Query: 64 KAKGIFTQDFILRGGRKFPLYSKVAEAGPLK---------AVVLPVIGDDVGIQLRQQDV 114
++ + T D +R G PL V +A LK +VL G D+ Q +D+
Sbjct: 179 SSRLVITADEGVRAGASIPLKKNVDDA--LKNPNVTSVEHVIVLKRTGSDIDWQ-EGRDL 235
Query: 115 SWKDFLSCVDYHPGPKYYPPVYRPVDSVINILFSSGTTGEPKAIPWTQLSPIRCAAEAWG 174
W+D + P++ P D + IL++SG+TG+PK + T + AA +
Sbjct: 236 WWRDLIEKA----SPEHQPEAMNAEDPLF-ILYTSGSTGKPKGVLHTTGGYLVYAATTFK 290
Query: 175 HI-DMKVGDVYCWPTNLGWVMG-PIILFSSFLSGAALALYHGSPLERSFGKFVQ---DSG 229
++ D GD+Y ++GWV G +L+ GA ++ G P + + Q
Sbjct: 291 YVFDYHPGDIYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQ 350
Query: 230 VSVLGTVPSLVKAW--KNTNCLQGLDWTKIRSFASTGETSNVDDDLWLASKAYYK--PII 285
V++L T P+ ++A + ++G D + +R S GE N + W K + P++
Sbjct: 351 VNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVV 410
Query: 286 ECCGGTELASSYIQGSMLQPQAFG-AFSTATMTTGF-----VILDELGVPYPDDQPCVGE 339
+ TE G M+ P + T F ++D G +P + G
Sbjct: 411 DTWWQTETG-----GFMITPLPGAIELKAGSATRPFFGVQPALVDNEG--HPQEGATEGN 463
Query: 340 VGLFPLYLGATDRLLNADH---EEVYFSGMPIYKGMHLRRHGDIIKRTVGGYIIVQGRAD 396
+ + + G R L DH E+ YFS +K M+ GD +R GY + GR D
Sbjct: 464 LVITDSWPGQA-RTLFGDHERFEQTYFS---TFKNMYFS--GDGARRDEDGYYWITGRVD 517
Query: 397 DTMNLGGIKTSSVEIERVCDGADESILETAAISVSPAGGGPEVLVICVVLKKGFTSQPVD 456
D +N+ G + + EIE A I E A + + A G + + V L G +P
Sbjct: 518 DVLNVSGHRLGTAEIESAL-VAHPKIAEAAVVGIPHAIKG-QAIYAYVTLNHG--EEPSP 573
Query: 457 KLKMIFSKAIQRNLNPLFKVSLVKIVLEFPRTASNKLLRRVLK 499
+L +++ + PL ++ P+T S K++RR+L+
Sbjct: 574 ELYAEVRNWVRKEIGPLATPDVLHWTDSLPKTRSGKIMRRILR 616
>pdb|1PG3|A Chain A, Acetyl Coa Synthetase, Acetylated On Lys609
pdb|1PG3|B Chain B, Acetyl Coa Synthetase, Acetylated On Lys609
pdb|1PG4|A Chain A, Acetyl Coa Synthetase, Salmonella Enterica
pdb|1PG4|B Chain B, Acetyl Coa Synthetase, Salmonella Enterica
Length = 652
Score = 136 bits (343), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 135/520 (25%), Positives = 222/520 (42%), Gaps = 46/520 (8%)
Query: 4 RLVANALDTMFSKGDAIAIDMPMTVHAVIIYLAIILAGYVVVSIADSFAAREIATRLRVS 63
R LD KGD +AI MPM A + LA G V I F+ +A + S
Sbjct: 119 RFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGCIIDS 178
Query: 64 KAKGIFTQDFILRGGRKFPLYSKVAEAGPLK---------AVVLPVIGDDVGIQLRQQDV 114
++ + T D +R GR PL V +A LK +VL G D+ Q +D+
Sbjct: 179 SSRLVITADEGVRAGRSIPLKKNVDDA--LKNPNVTSVEHVIVLKRTGSDIDWQ-EGRDL 235
Query: 115 SWKDFLSCVDYHPGPKYYPPVYRPVDSVINILFSSGTTGEPKAIPWTQLSPIRCAAEAWG 174
W+D + P++ P D + IL++SG+TG+PK + T + AA +
Sbjct: 236 WWRDLIEKA----SPEHQPEAMNAEDPLF-ILYTSGSTGKPKGVLHTTGGYLVYAATTFK 290
Query: 175 HI-DMKVGDVYCWPTNLGWVMG-PIILFSSFLSGAALALYHGSPLERSFGKFVQ---DSG 229
++ D GD+Y ++GWV G +L+ GA ++ G P + + Q
Sbjct: 291 YVFDYHPGDIYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQ 350
Query: 230 VSVLGTVPSLVKAW--KNTNCLQGLDWTKIRSFASTGETSNVDDDLWLASKAYYK--PII 285
V++L T P+ ++A + ++G D + +R S GE N + W K + P++
Sbjct: 351 VNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVV 410
Query: 286 ECCGGTELASSYIQGSMLQPQAFG-AFSTATMTTGF-----VILDELGVPYPDDQPCVGE 339
+ TE G M+ P + T F ++D G +P + G
Sbjct: 411 DTWWQTETG-----GFMITPLPGAIELKAGSATRPFFGVQPALVDNEG--HPQEGATEGN 463
Query: 340 VGLFPLYLGATDRLLNADHEEVYFSGMPIYKGMHLRRHGDIIKRTVGGYIIVQGRADDTM 399
+ + + G R L DHE + +K M+ GD +R GY + GR DD +
Sbjct: 464 LVITDSWPGQA-RTLFGDHERFEQTYFSTFKNMYFS--GDGARRDEDGYYWITGRVDDVL 520
Query: 400 NLGGIKTSSVEIERVCDGADESILETAAISVSPAGGGPEVLVICVVLKKGFTSQPVDKLK 459
N+ G + + EIE A I E A + + A G + + V L G +P +L
Sbjct: 521 NVSGHRLGTAEIESAL-VAHPKIAEAAVVGIPHAIKG-QAIYAYVTLNHG--EEPSPELY 576
Query: 460 MIFSKAIQRNLNPLFKVSLVKIVLEFPRTASNKLLRRVLK 499
+++ + PL ++ P+T S K++RR+L+
Sbjct: 577 AEVRNWVRKEIGPLATPDVLHWTDSLPKTRSGKIMRRILR 616
>pdb|1RY2|A Chain A, Crystal Structure Of Yeast Acetyl-Coenzyme A Synthetase In
Complex With Amp
Length = 663
Score = 100 bits (250), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 118/519 (22%), Positives = 219/519 (42%), Gaps = 47/519 (9%)
Query: 16 KGDAIAIDMPMTVHAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFIL 75
KGD +A+ MPM A+I LAI G + + F++ + R+ +K + T D
Sbjct: 138 KGDTVAVYMPMVPEAIITLLAISRIGAIHSVVFAGFSSNSLRDRINDGDSKVVITTDESN 197
Query: 76 RGGR----KFPLYSKVAEAGPLKAVVLPVIGDDVGIQLRQ-QDVSWKDFLSCVDYHPGPK 130
RGG+ K + + E ++ V++ ++ + +D+ W +
Sbjct: 198 RGGKVIETKRIVDDALRETPGVRHVLVYRKTNNPSVAFHAPRDLDW-----ATEKKKYKT 252
Query: 131 YYPPVYRPVDSV--INILFSSGTTGEPKAIPWTQLSPIRCAAEAWGH-IDMKVGDVYCWP 187
YYP PVDS + +L++SG+TG PK + + + A + D DV+
Sbjct: 253 YYPCT--PVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTFDTHQEDVFFTA 310
Query: 188 TNLGWVMGPI-ILFSSFLSGAALALYHGSPLERSFGKF---VQDSGVSVLGTVPSLVKAW 243
++GW+ G +++ L G A ++ G+P ++ ++ + + V+ P+ ++
Sbjct: 311 GDIGWITGHTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLL 370
Query: 244 KNT--NCLQGLDWTKIRSFASTGETSNVDDDLWLASKAYYK--PIIECCGGTELASSYIQ 299
K + ++ +R S GE + W + K PI++ TE S +
Sbjct: 371 KRAGDSYIENHSLKSLRCLGSVGEPIAAEVWEWYSEKIGKNEIPIVDTYWQTESGSHLVT 430
Query: 300 --GSMLQPQAFGAFSTATMTTGFVILD-----ELGVPYPDDQPCVGEVGLFPLYLGATDR 352
+ P G+ S V+LD EL + + V +P + R
Sbjct: 431 PLAGGVTPMKPGSASFPFFGIDAVVLDPNTGEELNTSHAEGVLAVKAA--WPSFA----R 484
Query: 353 LLNADHEEVYFSGMPIYKGMHLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIE 412
+ +H+ + + Y G + GD + GYI + GR DD +N+ G + S+ EIE
Sbjct: 485 TIWKNHDRYLDTYLNPYPGYYFT--GDGAAKDKDGYIWILGRVDDVVNVSGHRLSTAEIE 542
Query: 413 RVCDGADESILETAAISVSPAGGGPEVLVICVVLKKGFTSQPVD------KLKMIFSKAI 466
D + E A + + G V V+ K S D K ++F+ +
Sbjct: 543 AAII-EDPIVAECAVVGFNDDLTGQAVAAFVVLKNKSSWSTATDDELQDIKKHLVFT--V 599
Query: 467 QRNLNPLFKVSLVKIVLEFPRTASNKLLRRVLKDQLKHE 505
++++ P L+ +V + P+T S K++RR+L+ L E
Sbjct: 600 RKDIGPFAAPKLIILVDDLPKTRSGKIMRRILRKILAGE 638
>pdb|3R44|A Chain A, Mycobacterium Tuberculosis Fatty Acyl Coa Synthetase
Length = 517
Score = 58.5 bits (140), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 117/497 (23%), Positives = 188/497 (37%), Gaps = 60/497 (12%)
Query: 14 FSKGDAIAIDMPMTVHAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDF 73
+KGD +A+ MP +V ++ G V V I AA E++ L S +K
Sbjct: 65 IAKGDRVALLMPNSVEFCCLFYGAAKLGAVAVPINTRLAAPEVSFILSDSGSK------V 118
Query: 74 ILRGGRKFPLYSKV-AEAGPLKAVVLPVIGDDVGIQLRQQDVSWKDFLSCVDYHPGPKYY 132
++ G P+ + A+A P V + D + +LR
Sbjct: 119 VIYGAPSAPVIDAIRAQADPPGTVTDWIGADSLAERLRSAAAD----------------E 162
Query: 133 PPVYRPVDSVINILFSSGTTGEPKAIPWTQLSPIRCAAEAWGH-IDMKVGDVYCWPTNLG 191
P V D + I+++SGTTG PK + T S + AA +W ID++ D P +
Sbjct: 163 PAVECGGDDNLFIMYTSGTTGHPKGVVHTHES-VHSAASSWASTIDVRYRDRLLLPLPMF 221
Query: 192 WVMGPIILFSSFLSGAALALYHGSPLERSFGKFVQDSGVSVLGTVPSLVKAWKNTNCLQG 251
V + S + G L + + V++ V + G VP+++ +
Sbjct: 222 HVAALTTVIFSAMRGVTLISMPQFDATKVWSLIVEER-VCIGGAVPAILNFMRQVPEFAE 280
Query: 252 LDWTKIRSFASTGETSNVDDDLWLASKAYYKPIIECCGGTELASSYIQGSMLQPQ----A 307
LD R F + G + + + L K Y IE G L S G++L +
Sbjct: 281 LDAPDFRYFITGG--APMPEALI---KIYAAKNIEVVQGYALTESCGGGTLLLSEDALRK 335
Query: 308 FGAFSTATMTTGFVILDELGVPYPDDQPCVGEVGLFPLYLGATDRLLNADHEEVYFSGMP 367
G+ ATM T + + GV + GEV + +D LL +
Sbjct: 336 AGSAGRATMFTDVAVRGDDGVIREHGE---GEVVI------KSDILLKEYWNRPEATRDA 386
Query: 368 IYKGMHLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDGADESILETAA 427
G R GDI + GY+ ++ R D + GG EIE V G + E A
Sbjct: 387 FDNGWF--RTGDIGEIDDEGYLYIKDRLKDMIISGGENVYPAEIESVIIGV-PGVSEVAV 443
Query: 428 ISVSPAGGGPEVLVICVVLKKGFTSQPVDKLKMIFSKAIQRNLNPLFKVSLVKIVL---E 484
I + G I V + + Q + ++ L + L K V+
Sbjct: 444 IGLPDEKWGEIAAAIVVADQNEVSEQQI----------VEYCGTRLARYKLPKKVIFAEA 493
Query: 485 FPRTASNKLLRRVLKDQ 501
PR + K+L+ VL++Q
Sbjct: 494 IPRNPTGKILKTVLREQ 510
>pdb|3O82|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
5'-O-[n-(2,3-Dihydroxybenzoyl)sulfamoyl] Adenosine
pdb|3O82|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
5'-O-[n-(2,3-Dihydroxybenzoyl)sulfamoyl] Adenosine
pdb|3O83|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
2-(4-N-Dodecyl-1,2,
3-Triazol-1-Yl)-5'-O-[n-(2-Hydroxybenzoyl)
Sulfamoyl]adenosine
pdb|3O83|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
2-(4-N-Dodecyl-1,2,
3-Triazol-1-Yl)-5'-O-[n-(2-Hydroxybenzoyl)
Sulfamoyl]adenosine
pdb|3O84|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-Phenyl-1-(Pyridin-4-Ylmethyl)-1h-Pyrazolo[3,
4-B]pyridine-4- Carboxylic Acid.
pdb|3O84|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-Phenyl-1-(Pyridin-4-Ylmethyl)-1h-Pyrazolo[3,
4-B]pyridine-4- Carboxylic Acid.
pdb|3U16|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzyloxy)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid.
pdb|3U16|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzyloxy)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid.
pdb|3U17|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzoyl)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid
pdb|3U17|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzoyl)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid
Length = 544
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 96/443 (21%), Positives = 158/443 (35%), Gaps = 78/443 (17%)
Query: 1 MSYRLVANALDTMFSKGDAIAIDMPMTVHAVIIYLAIILAGYVVVSIADSFAAREIATRL 60
+S L + KGD + +P I++ A++ AG VV++ S E+ +
Sbjct: 64 LSTNLATRLAEKGLGKGDTALVQLPNVAEFYIVFFALLKAGVVVLNALYSHRQYELNAFI 123
Query: 61 RVSKAKGIFTQDFILRGGRKFPLYSKVAEAGPLKAVVLPVIGDDVGIQLRQQ--DVSWKD 118
+ + K +L G R+ ++S L V L ++ + L Q D D
Sbjct: 124 KQIQPK-------LLIGSRQHEVFSNNQFIDSLHDVNL---SPEIILMLNHQATDFGLLD 173
Query: 119 FLSCVDYHPGPKYYPPVYRPVDSVINILFSSGTTGEPKAIPWTQLS---PIRCAAEAWGH 175
++ P + P D V S G+TG PK IP T +R +AE G
Sbjct: 174 WIET----PAETFVDFSSTPADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAEICG- 228
Query: 176 IDMKVGDVYCWPTNLGWVMGPIILFSSFLSGAALALYHG--------SPLERSFGKFVQD 227
++ + P +++ S AL + H +P + +Q
Sbjct: 229 LNSNTRLLCALPAPHNFMLS---------SPGALGVLHAGGCVVMAPNPEPLNCFSIIQR 279
Query: 228 SGVSVLGTVPSLVKAWKNTNCLQGLDWTKIRSFASTGETSNVDDDLWLASKAYYKPIIEC 287
V++ VPS V W Q D + G S + S A P +
Sbjct: 280 HQVNMASLVPSAVIMWLE-KAAQYKDQIQSLKLLQVGGAS------FPESLARQVPEVLN 332
Query: 288 CGGTE---LASSYIQGSMLQPQAFGAFSTA----TMTTGFVILDELGVPYPDDQPCVGEV 340
C + +A + + L F+T + I+DE P+ GE+
Sbjct: 333 CKLQQVFGMAEGLVNYTRLDDSDEQIFTTQGRPISSDDEIKIVDEQYREVPE-----GEI 387
Query: 341 GLFP---------LYLGATDRLLNADHEEVYFSGMPIYKGMHLRRHGDIIKRTVGGYIIV 391
G+ Y D + Y+S GD+++RT G + V
Sbjct: 388 GMLATRGPYTFCGYYQSPEHNSQVFDEDNYYYS-------------GDLVQRTPDGNLRV 434
Query: 392 QGRADDTMNLGGIKTSSVEIERV 414
GR D +N GG K +S EIE++
Sbjct: 435 VGRIKDQINRGGEKIASEEIEKL 457
>pdb|2V7B|A Chain A, Crystal Structures Of A Benzoate Coa Ligase From
Burkholderia Xenovorans Lb400
pdb|2V7B|B Chain B, Crystal Structures Of A Benzoate Coa Ligase From
Burkholderia Xenovorans Lb400
Length = 529
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 94/373 (25%), Positives = 151/373 (40%), Gaps = 37/373 (9%)
Query: 140 DSVINILFSSGTTGEPKAIPWTQLSPIRCAAEAWGH--IDMKVGDVYCWPTNL--GWVMG 195
D + L+SSG+TG+PK T + + AE + + + DV L + +G
Sbjct: 183 DDIAFWLYSSGSTGKPKGTVHTHAN-LYWTAELYAKPILGIAENDVVFSAAKLFFAYGLG 241
Query: 196 PIILFSSFLSGAALALYHGSPLERSFGKFVQDSGVSVLGTVPSLVKAWKNTNCLQGLDWT 255
+ F + A+ + + F + V+ G VP+L + L
Sbjct: 242 NGLTFPLSVGATAILMAERPTADAIFARLVEHRPTVFYG-VPTLYANMLVSPNLPARADV 300
Query: 256 KIRSFASTGETSNVDDDLWLASKAYYK-PIIECCGGTELASSYIQGSMLQPQAFGAFSTA 314
IR S GE + ++ A++ I++ G TE+ ++ + A +T
Sbjct: 301 AIRICTSAGEA--LPREIGERFTAHFGCEILDGIGSTEMLHIFLSN---RAGAVEYGTTG 355
Query: 315 TMTTGFVI--LDELGVPYPDDQPCVGEVGLFPLYL-GATDRLL---NADHEEVYFSGMPI 368
G+ I DE G PD GEVG LY+ G + ++ N + F G I
Sbjct: 356 RPVPGYEIELRDEAGHAVPD-----GEVG--DLYIKGPSAAVMYWNNREKSRATFLGEWI 408
Query: 369 YKGMHLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDGADESILETAAI 428
R GD R G + GR+DD + + G S VE+E V D ++LE A +
Sbjct: 409 -------RSGDKYCRLPNGCYVYAGRSDDMLKVSGQYVSPVEVEMVLVQHD-AVLEAAVV 460
Query: 429 SVSPAGGGPEVLVICVVLKKGFTSQPVDKLKMIFSKAIQRNLNPLFKVSLVKIVLEFPRT 488
V GG VVLK+ F P + L ++ L P + V + P+T
Sbjct: 461 GVD--HGGLVKTRAFVVLKREFA--PSEILAEELKAFVKDRLAPHKYPRDIVFVDDLPKT 516
Query: 489 ASNKLLRRVLKDQ 501
A+ K+ R L++Q
Sbjct: 517 ATGKIQRFKLREQ 529
>pdb|3ETC|A Chain A, 2.1 A Structure Of Acyl-Adenylate Synthetase From
Methanosarcina Acetivorans Containing A Link Between
Lys256 And Cys298
pdb|3ETC|B Chain B, 2.1 A Structure Of Acyl-Adenylate Synthetase From
Methanosarcina Acetivorans Containing A Link Between
Lys256 And Cys298
Length = 580
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 86/378 (22%), Positives = 149/378 (39%), Gaps = 52/378 (13%)
Query: 145 ILFSSGTTGEPKAIPWTQLSPIR--CAAEAWGHIDMKVGDVYCWPTNLGW---VMGPIIL 199
+ FSSGT G PK + P+ A+ W +++ ++ + GW V G L
Sbjct: 230 VYFSSGTAGFPKMVEHDNTYPLGHILTAKYWQNVEDD--GLHYTVADSGWGKCVWGK--L 285
Query: 200 FSSFLSGAALALYHGSPLE-RSFGKFVQDSGVSVLGTVPSLVKAWKNTNCLQGLDWTKIR 258
+ +++G A+ +Y E ++ + GV+ P++ + + L +++ ++
Sbjct: 286 YGQWIAGCAVFVYDYDRFEAKNMLEKASKYGVTTFCAPPTIYRFLIKED-LSHYNFSTLK 344
Query: 259 SFASTGETSNVDDDLWLASKAYYKPIIECCGGTELASSYIQGSMLQPQAFGAFSTATMTT 318
GE N + K ++E G TE + ++P+ G+ T
Sbjct: 345 YAVVAGEPLNPEVFNRFLEFTGIK-LMEGFGQTETVVTIATFPWMEPKP-GSIGKPTPGY 402
Query: 319 GFVILDELGVPYPDDQPC-VGE-------------VGLFPLYLGATDRLLNADHEEVYFS 364
++D D + C VGE VGLF Y +R H+ Y +
Sbjct: 403 KIELMDR------DGRLCEVGEEGEIVINTMEGKPVGLFVHYGKDPERTEETWHDGYYHT 456
Query: 365 GMPIYKGMHLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDGADESILE 424
G D+ GY+ GRADD + G K E+E ++LE
Sbjct: 457 G-------------DMAWMDEDGYLWFVGRADDIIKTSGYKVGPFEVESAL-IQHPAVLE 502
Query: 425 TAAISV-SPAGGGPEVLVICVVLKKGFTSQPVDKLKMIFSKAIQRNLNPLFKVSLVKIVL 483
A V P G +V+ +VL K +T P D LK ++ P +++ V
Sbjct: 503 CAITGVPDPVRG--QVIKATIVLTKDYT--PSDSLKNELQDHVKNVTAPYKYPRIIEFVP 558
Query: 484 EFPRTASNKLLRRVLKDQ 501
E P+T S K+ R ++D+
Sbjct: 559 ELPKTISGKIRRVEIRDK 576
>pdb|2WD9|A Chain A, Crystal Structure Of Human Acyl-coa Synthetase
Medium-chain Family Member 2a (l64p Mutation) In Complex
With Ibuprofen
pdb|2WD9|B Chain B, Crystal Structure Of Human Acyl-coa Synthetase
Medium-chain Family Member 2a (l64p Mutation) In Complex
With Ibuprofen
pdb|2WD9|C Chain C, Crystal Structure Of Human Acyl-coa Synthetase
Medium-chain Family Member 2a (l64p Mutation) In Complex
With Ibuprofen
Length = 569
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 109/532 (20%), Positives = 193/532 (36%), Gaps = 93/532 (17%)
Query: 14 FSKGDAIAIDMPMTVHAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDF 73
+GD +A+ +P ++ L I AG + + + +I RL++SKAK
Sbjct: 96 LQRGDRVAVVLPRVPEWWLVILGCIRAGLIFMPGTIQMKSTDILYRLQMSKAKA------ 149
Query: 74 ILRGGRKFPLYSKVAEAGPLKAVVLPVIGDDVGIQLRQQDVSWKDFLSCVDYHPGPKYYP 133
I+ G VA P + L V W +F ++ +
Sbjct: 150 IVAGDEVIQEVDTVASECPSLRIKLLVSEKSCD--------GWLNFKKLLN--EASTTHH 199
Query: 134 PVYRPVDSVINILFSSGTTGEPKAIPWTQLSPIRCAAEAWGHIDMKVGDVYCWPTNLGWV 193
V I F+SGT+G PK + S A G ++ D+ ++ GW+
Sbjct: 200 CVETGSQEASAIYFTSGTSGLPKMAEHSYSSLGLKAKMDAGWTGLQASDIMWTISDTGWI 259
Query: 194 MG------------------------PIILFSSFLSGAALALYHGSPL--------ERSF 221
+ P+++ + LS + G+P+ + S
Sbjct: 260 LNILCSLMEPWALGACTFVHLLPKFDPLVILKT-LSSYPIKSMMGAPIVYRMLLQQDLSS 318
Query: 222 GKFVQDSGVSVLGT--VPSLVKAWKNTNCLQGLDWTKIRSFASTGETSNVDDDLWLASKA 279
KF +G +P ++ W+ GLD + TG T V + + K
Sbjct: 319 YKFPHLQNCVTVGESLLPETLENWRAQT---GLDIRESYGQTETGLTCMVSKTMKI--KP 373
Query: 280 YYKPIIECCGGTELASSYIQGSMLQPQAFGAFSTATMTTGFVILDELGVPYPDDQPCVGE 339
Y C ++ +G++L P G ++G+ +P
Sbjct: 374 GYMGTAASCYDVQIIDD--KGNVLPPGTEG---------------DIGIRVKPIRP---- 412
Query: 340 VGLFPLYLGATDRLLNADHEEVYFSGMPIYKGMHLRRHGDIIKRTVGGYIIVQGRADDTM 399
+G+F Y+ D+ + + GD + GY GRADD +
Sbjct: 413 IGIFSGYVDNPDKTAANIRGDFWL-------------LGDRGIKDEDGYFQFMGRADDII 459
Query: 400 NLGGIKTSSVEIERVCDGADESILETAAISVSPAGGGPEVLVICVVLKKGFTSQPVDKLK 459
N G + E+E +++ETA IS SP EV+ VVL F S ++L
Sbjct: 460 NSSGYRIGPSEVENAL-MEHPAVVETAVIS-SPDPVRGEVVKAFVVLASQFLSHDPEQLT 517
Query: 460 MIFSKAIQRNLNPLFKVSLVKIVLEFPRTASNKLLRRVLKDQLKHELSVRSR 511
+ ++ P ++ VL P+T + K+ R L+D+ + ++S ++R
Sbjct: 518 KELQQHVKSVTAPYKYPRKIEFVLNLPKTVTGKIQRAKLRDK-EWKMSGKAR 568
>pdb|3B7W|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a, With L64p Mutation
pdb|3C5E|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Atp
pdb|3DAY|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp-Cpp
pdb|2VZE|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp
pdb|2VZE|B Chain B, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp
pdb|2VZE|C Chain C, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp
pdb|3EQ6|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Ternary Complex With Products
pdb|3EQ6|B Chain B, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Ternary Complex With Products
pdb|3GPC|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Complex With Coa
pdb|3GPC|B Chain B, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Complex With Coa
Length = 570
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 109/532 (20%), Positives = 193/532 (36%), Gaps = 93/532 (17%)
Query: 14 FSKGDAIAIDMPMTVHAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDF 73
+GD +A+ +P ++ L I AG + + + +I RL++SKAK
Sbjct: 96 LQRGDRVAVVLPRVPEWWLVILGCIRAGLIFMPGTIQMKSTDILYRLQMSKAKA------ 149
Query: 74 ILRGGRKFPLYSKVAEAGPLKAVVLPVIGDDVGIQLRQQDVSWKDFLSCVDYHPGPKYYP 133
I+ G VA P + L V W +F ++ +
Sbjct: 150 IVAGDEVIQEVDTVASECPSLRIKLLVSEKSCD--------GWLNFKKLLN--EASTTHH 199
Query: 134 PVYRPVDSVINILFSSGTTGEPKAIPWTQLSPIRCAAEAWGHIDMKVGDVYCWPTNLGWV 193
V I F+SGT+G PK + S A G ++ D+ ++ GW+
Sbjct: 200 CVETGSQEASAIYFTSGTSGLPKMAEHSYSSLGLKAKMDAGWTGLQASDIMWTISDTGWI 259
Query: 194 MG------------------------PIILFSSFLSGAALALYHGSPL--------ERSF 221
+ P+++ + LS + G+P+ + S
Sbjct: 260 LNILCSLMEPWALGACTFVHLLPKFDPLVILKT-LSSYPIKSMMGAPIVYRMLLQQDLSS 318
Query: 222 GKFVQDSGVSVLGT--VPSLVKAWKNTNCLQGLDWTKIRSFASTGETSNVDDDLWLASKA 279
KF +G +P ++ W+ GLD + TG T V + + K
Sbjct: 319 YKFPHLQNCVTVGESLLPETLENWRAQT---GLDIRESYGQTETGLTCMVSKTMKI--KP 373
Query: 280 YYKPIIECCGGTELASSYIQGSMLQPQAFGAFSTATMTTGFVILDELGVPYPDDQPCVGE 339
Y C ++ +G++L P G ++G+ +P
Sbjct: 374 GYMGTAASCYDVQIIDD--KGNVLPPGTEG---------------DIGIRVKPIRP---- 412
Query: 340 VGLFPLYLGATDRLLNADHEEVYFSGMPIYKGMHLRRHGDIIKRTVGGYIIVQGRADDTM 399
+G+F Y+ D+ + + GD + GY GRADD +
Sbjct: 413 IGIFSGYVDNPDKTAANIRGDFWL-------------LGDRGIKDEDGYFQFMGRADDII 459
Query: 400 NLGGIKTSSVEIERVCDGADESILETAAISVSPAGGGPEVLVICVVLKKGFTSQPVDKLK 459
N G + E+E +++ETA IS SP EV+ VVL F S ++L
Sbjct: 460 NSSGYRIGPSEVENAL-MEHPAVVETAVIS-SPDPVRGEVVKAFVVLASQFLSHDPEQLT 517
Query: 460 MIFSKAIQRNLNPLFKVSLVKIVLEFPRTASNKLLRRVLKDQLKHELSVRSR 511
+ ++ P ++ VL P+T + K+ R L+D+ + ++S ++R
Sbjct: 518 KELQQHVKSVTAPYKYPRKIEFVLNLPKTVTGKIQRAKLRDK-EWKMSGKAR 568
>pdb|4GR5|A Chain A, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
pdb|4GR5|B Chain B, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
pdb|4GR5|C Chain C, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
pdb|4GR5|D Chain D, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
Length = 570
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 95/403 (23%), Positives = 151/403 (37%), Gaps = 95/403 (23%)
Query: 140 DSVINILFSSGTTGEPKAIPWTQLSPIRCAAEAW---GHIDMKVGDVYCWPTNLGWVMGP 196
+ V ++F+SG+TG PK + +SP R + + +V+ + + W
Sbjct: 214 EDVACVMFTSGSTGRPKGV----MSPHRALTGTYLGQDYAGFGPDEVFLQCSPVSWDAFG 269
Query: 197 IILFSSFLSGAALALYHGS---PLERSFGKFVQDSGVSVL-------------------- 233
+ LF + L GA L G PLE G+ V GV++L
Sbjct: 270 LELFGALLFGARCVLQSGQNPDPLE--IGELVARHGVTMLQLSASLFNFLVDEVPEAFEG 327
Query: 234 ----------GTVPSLVKAWKNTNCLQ-GLDWTKIRSFASTGETSNVDDDLWLASKAYYK 282
+VP + KA ++ L+ G + S T + V DL
Sbjct: 328 VRYAITGGEPASVPHVAKARRDHPALRLGNGYGPAESMGFTTHHAVVAGDL----SGTAL 383
Query: 283 PIIECCGGTELAS--SYIQGSMLQPQAFGAF-----STATMTTGFVILDELGVPYPDDQP 335
PI G LA +Y+ L+P A GA + A + G+V +P
Sbjct: 384 PI-----GVPLAGKRAYVLDDDLKPAANGALGELYVAGAGLAHGYV-----------SRP 427
Query: 336 CVGEVGLFPLYLGATDRLLNADHEEVYFSGMPIYKGMHLRRHGDIIKRTVGGYIIVQGRA 395
+ T AD F+G G + R GD+ +R G + GRA
Sbjct: 428 AL------------TAERFVAD----PFAGP---GGERMYRTGDLARRRADGVLEYVGRA 468
Query: 396 DDTMNLGGIKTSSVEIERVCDGADESILETAAISVSPAGGGPEVLVICVVLKKGFTSQPV 455
DD + + G + E+E G + AA+ + G + LV VV ++
Sbjct: 469 DDQVKIRGFRVEPGEVEARLVG--HPAVRQAAVLAQDSRLGDKQLVAYVVAERADAPPDA 526
Query: 456 DKLKMIFSKAIQRNLNPLFKVSLVKIVLEFPRTASNKLLRRVL 498
+L+ ++A+ + P+ V V E PRT + KL RR L
Sbjct: 527 AELRRHVAEALPAYMVPVECVP----VDELPRTPNGKLDRRAL 565
>pdb|1MD9|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb And Amp
Length = 539
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 63/143 (44%), Gaps = 31/143 (21%)
Query: 376 RHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIER-------VCDGA-----DESIL 423
R GDI++ T GYI+V+GRA D +N GG K ++ E+E V D A D+ +
Sbjct: 410 RTGDIVRLTRDGYIVVEGRAKDQINRGGEKVAAEEVENHLLAHPAVHDAAXVSXPDQFLG 469
Query: 424 ETAAISVSPAGGGPEVLVICVVLKKGFTSQPVDKLKMIFSKAIQRNLNPLFKVSLVKIVL 483
E + + + P P+ + L+ +R L V+ V
Sbjct: 470 ERSCVFIIPRDEAPKAAELKAFLR-------------------ERGLAAYKIPDRVEFVE 510
Query: 484 EFPRTASNKLLRRVLKDQLKHEL 506
FP+T K+ ++ L++ + +L
Sbjct: 511 SFPQTGVGKVSKKALREAISEKL 533
>pdb|1MDB|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb-adenylate
pdb|1MDF|A Chain A, Crystal Structure Of Dhbe In Absence Of Substrate
Length = 539
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 63/143 (44%), Gaps = 31/143 (21%)
Query: 376 RHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIER-------VCDGA-----DESIL 423
R GDI++ T GYI+V+GRA D +N GG K ++ E+E V D A D+ +
Sbjct: 410 RTGDIVRLTRDGYIVVEGRAKDQINRGGEKVAAEEVENHLLAHPAVHDAAMVSMPDQFLG 469
Query: 424 ETAAISVSPAGGGPEVLVICVVLKKGFTSQPVDKLKMIFSKAIQRNLNPLFKVSLVKIVL 483
E + + + P P+ + L+ +R L V+ V
Sbjct: 470 ERSCVFIIPRDEAPKAAELKAFLR-------------------ERGLAAYKIPDRVEFVE 510
Query: 484 EFPRTASNKLLRRVLKDQLKHEL 506
FP+T K+ ++ L++ + +L
Sbjct: 511 SFPQTGVGKVSKKALREAISEKL 533
>pdb|3T5B|A Chain A, Crystal Structure Of N-Terminal Domain Of Facl13 From
Mycobacterium Tuberculosis
pdb|3T5C|A Chain A, Crystal Structure Of N-Terminal Domain Of Facl13 From
Mycobacterium Tuberculosis In Different Space Group C2
pdb|3T5C|B Chain B, Crystal Structure Of N-Terminal Domain Of Facl13 From
Mycobacterium Tuberculosis In Different Space Group C2
Length = 396
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 77/321 (23%), Positives = 125/321 (38%), Gaps = 35/321 (10%)
Query: 14 FSKGDAIAIDMPMTVHAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDF 73
+KGD +A+ MP +V ++ G V V I AA E++ L S +K
Sbjct: 51 IAKGDRVALLMPNSVEFCCLFYGAAKLGAVAVPINTRLAAPEVSFILSDSGSK------V 104
Query: 74 ILRGGRKFPLYSKV-AEAGPLKAVVLPVIGDDVGIQLRQQDVSWKDFLSCVDYHPGPKYY 132
++ G P+ + A+A P V + D + +LR
Sbjct: 105 VIYGAPSAPVIDAIRAQADPPGTVTDWIGADSLAERLRSAAAD----------------E 148
Query: 133 PPVYRPVDSVINILFSSGTTGEPKAIPWTQLSPIRCAAEAWGH-IDMKVGDVYCWPTNLG 191
P V D + I+++SGTTG PK + T S + AA +W ID++ D P +
Sbjct: 149 PAVECGGDDNLFIMYTSGTTGHPKGVVHTHES-VHSAASSWASTIDVRYRDRLLLPLPMF 207
Query: 192 WVMGPIILFSSFLSGAALALYHGSPLERSFGKFVQDSGVSVLGTVPSLVKAWKNTNCLQG 251
V + S + G L + + V++ V + G VP+++ +
Sbjct: 208 HVAALTTVIFSAMRGVTLISMPQFDATKVWSLIVEER-VCIGGAVPAILNFMRQVPEFAE 266
Query: 252 LDWTKIRSFASTGETSNVDDDLWLASKAYYKPIIECCGGTELASSYIQGSMLQPQ----A 307
LD R F + G + + + L K Y IE G L S G++L +
Sbjct: 267 LDAPDFRYFITGG--APMPEAL---IKIYAAKNIEVVQGYALTESCGGGTLLLSEDALRK 321
Query: 308 FGAFSTATMTTGFVILDELGV 328
G+ ATM T + + GV
Sbjct: 322 AGSAGRATMFTDVAVRGDDGV 342
>pdb|3RG2|A Chain A, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|B Chain B, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|C Chain C, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|D Chain D, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|E Chain E, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|F Chain F, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|G Chain G, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|H Chain H, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|I Chain I, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|J Chain J, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
Length = 617
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 78/310 (25%), Positives = 106/310 (34%), Gaps = 72/310 (23%)
Query: 138 PVDSVINILFSSGTTGEPKAIPWTQ---LSPIRCAAEAWGHIDMKVGDVYCWPTNLGWVM 194
P D V S GTTG PK IP T +R + E + + P + M
Sbjct: 182 PADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVEIC-QFTQQTRYLCAIPAAHNYAM 240
Query: 195 GPIILFSSFLSGAALALYHGSPLERSFGKFVQDSGVSVLGTVPSLVKAWKNTNCLQGLDW 254
FL+G + L F ++ V+V VP V W LQ L
Sbjct: 241 SSPGSLGVFLAGGTVVLAADPSATLCF-PLIEKHQVNVTALVPPAVSLW-----LQALIE 294
Query: 255 TKIRSFASTGETSNVDDDLWLASKAYYKPIIECCGGTELASSYIQ------GSMLQPQAF 308
+ R+ ++ + V GG L+++ G LQ Q F
Sbjct: 295 GESRAQLASLKLLQV-------------------GGARLSATLAARIPAEIGCQLQ-QVF 334
Query: 309 GAFSTATMTTGFV-----------ILDELGVPY-PDDQPCVGEVGLFPLYLGATDRLL-- 354
G M G V I+ G P PDD+ V + PL G RL+
Sbjct: 335 G------MAEGLVNYTRLDDSAEKIIHTQGYPMCPDDEVWVADAEGNPLPQGEVGRLMTR 388
Query: 355 ----------NADHEEVYFSGMPIYKGMHLRRHGDIIKRTVGGYIIVQGRADDTMNLGGI 404
+ H F Y GD+I GYI VQGR D +N GG
Sbjct: 389 GPYTFRGYYKSPQHNASAFDANGFYCS------GDLISIDPEGYITVQGREKDQINRGGE 442
Query: 405 KTSSVEIERV 414
K ++ EIE +
Sbjct: 443 KIAAEEIENL 452
>pdb|3G7S|A Chain A, Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Ligase
(Fadd1) From Archaeoglobus Fulgidus
pdb|3G7S|B Chain B, Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Ligase
(Fadd1) From Archaeoglobus Fulgidus
Length = 549
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 65/132 (49%), Gaps = 5/132 (3%)
Query: 370 KGMHLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDGADESILETAAIS 429
KG R GD+ G++ Q R + + G + E+E + E++ + A I
Sbjct: 413 KGRKFFRTGDVGFIDEEGFLHFQDRVKEVIKYKGYTIAPFELEALLX-KHEAVXDVAVIG 471
Query: 430 VSPAGGGPEVLVICVVLKKGFTSQPVDKLKMIFSKAIQRNLNPLFKVSLVKIVLEFPRTA 489
P EV +VLK + + VD+ +I + ++ ++ +V V+ V E PRTA
Sbjct: 472 -KPDEEAGEVPKAFIVLKPEYRGK-VDEEDII--EWVRERISGYKRVREVEFVEELPRTA 527
Query: 490 SNKLLRRVLKDQ 501
S KLLRR+L+++
Sbjct: 528 SGKLLRRLLREK 539
>pdb|1ULT|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1ULT|B Chain B, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V25|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V25|B Chain B, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V26|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V26|B Chain B, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
Length = 541
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 50/188 (26%), Positives = 79/188 (42%), Gaps = 24/188 (12%)
Query: 322 ILDELGVPYPDDQPCVGEVGLF-PL----YLGATDRLLNADHEEVYFSGMPIYKGMHLRR 376
+ DE G P P D +GEV L P Y G + +A + +F R
Sbjct: 368 VADEEGRPVPKDGKALGEVQLKGPWITGGYYGNEEATRSALTPDGFF------------R 415
Query: 377 HGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDGADESILETAAISVSPAGGG 436
GDI GY+ ++ R D + GG SSV++E G + ++ AA+ P
Sbjct: 416 TGDIAVWDEEGYVEIKDRLKDLIKSGGEWISSVDLENALMGHPK--VKEAAVVAIPHPKW 473
Query: 437 PEVLVICVVLKKGFTSQPVDKLKMIFSKAIQRNLNPLFKVSLVKIVLEFPRTASNKLLRR 496
E + VV+ +G P + + + + P V E PRT++ K L+R
Sbjct: 474 QE-RPLAVVVPRGEKPTPEELNEHLLKAGFAKWQLPDAYV----FAEEIPRTSAGKFLKR 528
Query: 497 VLKDQLKH 504
L++Q K+
Sbjct: 529 ALREQYKN 536
>pdb|3A9U|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate--Coa Ligase
pdb|3A9V|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate--Coa Ligase
pdb|3NI2|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate:coa Ligase
Length = 536
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 109/518 (21%), Positives = 195/518 (37%), Gaps = 57/518 (11%)
Query: 1 MSYRLVANALDTM-FSKGDAIAIDMPMTVHAVIIYLAIILAGYVVVSIADSFAAREIATR 59
++ R VA+ L+ + +GD I + +P + V+ +L G ++ + E+A
Sbjct: 57 LTARRVASGLNKIGIQQGDVIMLFLPSSPEFVLAFLGASHRGAIITAANPFSTPAELAKH 116
Query: 60 LRVSKAKGIFTQDFILRGGRKFPLYSKVAEAGPLKAVVLPVIGDDVGIQLRQQDVSWKDF 119
+ S+AK + TQ + F S V V+ D + + + ++
Sbjct: 117 AKASRAKLLITQACYYEKVKDFARESDVK-------VMCVDSAPDGCLHFSELTQADENE 169
Query: 120 LSCVDYHPGPKYYPPVYRPVDSVINILFSSGTTGEPKAIPWTQLSPIRCAAEAWGHIDMK 179
VD P D V+ + +SSGTTG PK + T I A+ +D
Sbjct: 170 APQVDISP------------DDVVALPYSSGTTGLPKGVMLTHKGLITSVAQ---QVDGD 214
Query: 180 VGDVYCWPTNLGWVMGPIILFSSFLSGAALALYHGSPLE-------RSFGKFVQDSGVSV 232
++Y ++ + P+ + S L G+P+ S ++ VS+
Sbjct: 215 NPNLYFHSEDVILCVLPMFHIYALNSIMLCGLRVGAPILIMPKFEIGSLLGLIEKYKVSI 274
Query: 233 LGTVPSLVKAWKNTNCLQGLDWTKIRSFASTGETSNVDDDLWLASKAYYKPIIECCGGTE 292
VP ++ + + L D + +R S G + + + +K + + G TE
Sbjct: 275 APVVPPVMMSIAKSPDLDKHDLSSLRMIKSGGAPLGKELEDTVRAKFPQARLGQGYGMTE 334
Query: 293 LASSYIQGSMLQPQAF----GAFSTATMTTGFVILD-ELGVPYPDDQPCVGEVGLFPLYL 347
+ F GA T I+D E G P +QP GE+ +
Sbjct: 335 AGPVLAMCLAFAKEPFDIKPGACGTVVRNAEMKIVDPETGASLPRNQP--GEICI----- 387
Query: 348 GATDRLLNADHEEVYFSGMPIYKGMHLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTS 407
D+++ + + I K L IV R + + G + +
Sbjct: 388 -RGDQIMKGYLNDPEATSRTIDKEGWLHTGDIGYIDDDDELFIVD-RLKELIKYKGFQVA 445
Query: 408 SVEIERVCDGADESILETAAISVSPAGGGPEVLVICVVLKKGFTSQPV-DKLKMIFSKAI 466
E+E + E I + A + + G EV V VV K SQ D++K SK +
Sbjct: 446 PAELEALLIAHPE-ISDAAVVGLKDEDAG-EVPVAFVV--KSEKSQATEDEIKQYISKQV 501
Query: 467 QRNLNPLF--KVSLVKIVLEFPRTASNKLLRRVLKDQL 502
+F ++ V + P+ S K+LR+ LK++L
Sbjct: 502 ------IFYKRIKRVFFIEAIPKAPSGKILRKNLKEKL 533
>pdb|3VNQ|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1
With Atp From Streptomyces
pdb|3VNR|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1
With Aminobutyric Acid And Amp From Streptomyces
pdb|3VNS|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1
With D-valine And Amp From Streptomyces
Length = 544
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 59/251 (23%), Positives = 97/251 (38%), Gaps = 35/251 (13%)
Query: 17 GDAIAIDMPMTVHAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILR 76
GD +A+ M A++ LAI+ G V + R VS++ DFIL
Sbjct: 85 GDRVALRMSPGAEAIVAILAILKCGAAYVPVD---------LRNPVSRS------DFIL- 128
Query: 77 GGRKFPLYSKVAEAGPLKAVVLPVIGDDVGIQLRQQDVSWKDFLSCVDYHPGPKYYPPVY 136
A++G + P G V +R V+ C D PGP P
Sbjct: 129 -----------ADSGASALIGEPHEGCAVTRVVRTAAVA-----ECKDAEPGPVTGAPGP 172
Query: 137 RPVDSVINILFSSGTTGEPKAIPWTQLSPIRCAAEAWGHIDMKVGDVYCWPTNLGWVMGP 196
D + ++++SGTTG PK +P + + A A D D + +L +
Sbjct: 173 GAED-MAYVIYTSGTTGNPKGVPVRHANVLALLAGAPSVFDFSGDDRWLLFHSLSFDFSV 231
Query: 197 IILFSSFLSGAALAL--YHGSPLERSFGKFVQDSGVSVLGTVPSLVKAWKNTNCLQGLDW 254
++ +F +GA L + + + + + D GV+V+ P+ A G D
Sbjct: 232 WEIWGAFSTGAELVVLPHWAARTPEQYLAVIIDRGVTVINQTPTAFLALTEAAVRGGRDV 291
Query: 255 TKIRSFASTGE 265
+ +R GE
Sbjct: 292 SGLRYVIFGGE 302
>pdb|4FUQ|A Chain A, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|B Chain B, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|C Chain C, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|D Chain D, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
Length = 503
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 56/126 (44%), Gaps = 7/126 (5%)
Query: 378 GDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDGADESILETAAISVSPAGGGP 437
GD+ K GY+ + GR D + GG EIE D A ++E+A I V A G
Sbjct: 381 GDLGKIDERGYVHILGRGKDLVITGGFNVYPKEIESEID-AXPGVVESAVIGVPHADFG- 438
Query: 438 EVLVICVVLKKGFTSQPVDKLKMIFSKAIQRNLNPLFKVSLVKIVLEFPRTASNKLLRRV 497
E + VV KG T +D+ +++ + L V V + PR K+ + V
Sbjct: 439 EGVTAVVVRDKGAT---IDEAQVL--HGLDGQLAKFKXPKKVIFVDDLPRNTXGKVQKNV 493
Query: 498 LKDQLK 503
L++ K
Sbjct: 494 LRETYK 499
>pdb|3TSY|A Chain A, 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Protein
Length = 979
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 58/283 (20%), Positives = 107/283 (37%), Gaps = 49/283 (17%)
Query: 1 MSYRLVANALDTMFSKGDAIAIDMPMTVHAVIIYLAIILAGYVVVSIADSFAAREIATRL 60
+S ++ AN ++ D + + +P V+ +LA G + F EIA +
Sbjct: 97 ISRQIAANFHKLGVNQNDVVMLLLPNCPEFVLSFLAASFRGATATAANPFFTPAEIAKQA 156
Query: 61 RVSKAKGIFTQDFILRGGRKFPLYSKVAEAGPLK---AVVLPVIGDDVGI---------- 107
+ S K I T+ V + PL+ VV+ I D+ +
Sbjct: 157 KASNTKLIITE------------ARYVDKIKPLQNDDGVVIVCIDDNESVPIPEGCLRFT 204
Query: 108 QLRQQDVSWKDFLSCVDYHPGPKYYPPVYRPVDSVINILFSSGTTGEPKAIPWTQLSPIR 167
+L Q + + V+ P D V+ + +SSGTTG PK + T +
Sbjct: 205 ELTQSTTEASEVIDSVEISP------------DDVVALPYSSGTTGLPKGVMLTHKGLVT 252
Query: 168 CAAEAWGHIDMKVGDVYCWPTNLGWVMGPI--------ILFSSFLSGAALALYHGSPLER 219
A+ +D + ++Y ++ + P+ I+ GAA+ + +
Sbjct: 253 SVAQ---QVDGENPNLYFHSDDVILCVLPMFHIYALNSIMLCGLRVGAAILIMPKFEINL 309
Query: 220 SFGKFVQDSGVSVLGTVPSLVKAWKNTNCLQGLDWTKIRSFAS 262
+ +Q V+V VP +V A ++ + D + IR S
Sbjct: 310 LL-ELIQRCKVTVAPMVPPIVLAIAKSSETEKYDLSSIRVVKS 351
>pdb|2QVZ|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303A MUTATION,
BOUND TO 3- Chlorobenzoate
pdb|2QW0|X Chain X, 4-chlorobenzoyl-coa Ligase/synthetase, I303a Mutation,
Bound To 3,4 Dichlorobenzoate
Length = 504
Score = 37.4 bits (85), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 95/390 (24%), Positives = 146/390 (37%), Gaps = 38/390 (9%)
Query: 125 YHPGPKYYPPVYRPVDSVINILFSSGTTGEPKAIPWTQLSPIRCAAEAWGHIDMKVG--- 181
Y GP P P I ++SGTTG PKA + P R A + +VG
Sbjct: 139 YSYGPPIEDPQREPAQPAF-IFYTSGTTGLPKA----AIIPQRAAESRVLFMSTQVGLRH 193
Query: 182 ---DVYCWPTNLGWVMG--PIILFSSFLSGAALALYHGSPLERSFGKFVQDSGVSVLGTV 236
+V L V+G +++ + L G + + P++ + VQ V+ L
Sbjct: 194 GRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDAL--QLVQQEQVTSLFAT 251
Query: 237 PSLVKAWKNTNCLQG--LDWTKIRSFASTGETSNVDDDLWLASKAYYKP--IIECCGGTE 292
P+ + A G L +R G T D L + + P + G TE
Sbjct: 252 PTHLDALAAAAAHAGSSLKLDSLRHVTFAGATM---PDAVLETVHQHLPGEKVNAYGTTE 308
Query: 293 LASSYIQGSMLQPQAFGAFSTATMTTGFVILDELGVPYPDDQPCVGEVGLFPLYLGATDR 352
+S M QP+ + + ++ GV D+ GE G L + A+D
Sbjct: 309 AMNSLY---MRQPKTGTEMAPGFFSEVRIVRIGGGV---DEIVANGEEG--ELIVAASDS 360
Query: 353 LLNADHEEVYFSGMPIYKGMHLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIE 412
+ + + G + R D+ T G + + GR DD + GG EIE
Sbjct: 361 AFVGYLNQPQATAEKLQDGWY--RTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIE 418
Query: 413 RVCDGADESILETAAISVSPAGGGPEVLVICVVLKKGFTSQPVDKLKMIFSKAIQRNLNP 472
RV G + E I ++ G V CVV + G T D L + L
Sbjct: 419 RVL-GTAPGVTEVVVIGLADQRWGQSV-TACVVPRLGETLS-ADALDTFCRSS---ELAD 472
Query: 473 LFKVSLVKIVLEFPRTASNKLLRRVLKDQL 502
+ I+ + P+ A NK+LRR L Q+
Sbjct: 473 FKRPKRYFILDQLPKNALNKVLRRQLVQQV 502
>pdb|1T5D|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE BOUND TO
4-Chlorobenzoate
pdb|3CW9|A Chain A, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE IN THE
THIOESTER-Forming Conformation, Bound To
4-Chlorophenacyl-Coa
pdb|3CW9|B Chain B, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE IN THE
THIOESTER-Forming Conformation, Bound To
4-Chlorophenacyl-Coa
Length = 504
Score = 37.0 bits (84), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 95/390 (24%), Positives = 146/390 (37%), Gaps = 38/390 (9%)
Query: 125 YHPGPKYYPPVYRPVDSVINILFSSGTTGEPKAIPWTQLSPIRCAAEAWGHIDMKVG--- 181
Y GP P P I ++SGTTG PKA + P R A + +VG
Sbjct: 139 YSYGPPIEDPQREPAQPAF-IFYTSGTTGLPKA----AIIPQRAAESRVLFMSTQVGLRH 193
Query: 182 ---DVYCWPTNLGWVMG--PIILFSSFLSGAALALYHGSPLERSFGKFVQDSGVSVLGTV 236
+V L V+G +++ + L G + + P++ + VQ V+ L
Sbjct: 194 GRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDAL--QLVQQEQVTSLFAT 251
Query: 237 PSLVKAWKNTNCLQG--LDWTKIRSFASTGETSNVDDDLWLASKAYYKP--IIECCGGTE 292
P+ + A G L +R G T D L + + P + G TE
Sbjct: 252 PTHLDALAAAAAHAGSSLKLDSLRHVTFAGATM---PDAVLETVHQHLPGEKVNIYGTTE 308
Query: 293 LASSYIQGSMLQPQAFGAFSTATMTTGFVILDELGVPYPDDQPCVGEVGLFPLYLGATDR 352
+S M QP+ + + ++ GV D+ GE G L + A+D
Sbjct: 309 AMNSLY---MRQPKTGTEMAPGFFSEVRIVRIGGGV---DEIVANGEEG--ELIVAASDS 360
Query: 353 LLNADHEEVYFSGMPIYKGMHLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIE 412
+ + + G + R D+ T G + + GR DD + GG EIE
Sbjct: 361 AFVGYLNQPQATAEKLQDGWY--RTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIE 418
Query: 413 RVCDGADESILETAAISVSPAGGGPEVLVICVVLKKGFTSQPVDKLKMIFSKAIQRNLNP 472
RV G + E I ++ G V CVV + G T D L + L
Sbjct: 419 RVL-GTAPGVTEVVVIGLADQRWGQSV-TACVVPRLGETLS-ADALDTFCRSS---ELAD 472
Query: 473 LFKVSLVKIVLEFPRTASNKLLRRVLKDQL 502
+ I+ + P+ A NK+LRR L Q+
Sbjct: 473 FKRPKRYFILDQLPKNALNKVLRRQLVQQV 502
>pdb|3CW8|X Chain X, 4-chlorobenzoyl-coa Ligase/synthetase, Bound To
4cba-adenylate
Length = 504
Score = 37.0 bits (84), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 95/390 (24%), Positives = 146/390 (37%), Gaps = 38/390 (9%)
Query: 125 YHPGPKYYPPVYRPVDSVINILFSSGTTGEPKAIPWTQLSPIRCAAEAWGHIDMKVG--- 181
Y GP P P I ++SGTTG PKA + P R A + +VG
Sbjct: 139 YSYGPPIEDPQREPAQPAF-IFYTSGTTGLPKA----AIIPQRAAESRVLFMSTQVGLRH 193
Query: 182 ---DVYCWPTNLGWVMG--PIILFSSFLSGAALALYHGSPLERSFGKFVQDSGVSVLGTV 236
+V L V+G +++ + L G + + P++ + VQ V+ L
Sbjct: 194 GRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVIEEFRPVDAL--QLVQQEQVTSLFAT 251
Query: 237 PSLVKAWKNTNCLQG--LDWTKIRSFASTGETSNVDDDLWLASKAYYKP--IIECCGGTE 292
P+ + A G L +R G T D L + + P + G TE
Sbjct: 252 PTHLDALAAAAAHAGSSLKLDSLRHVTFAGATM---PDAVLETVHQHLPGEKVNIYGTTE 308
Query: 293 LASSYIQGSMLQPQAFGAFSTATMTTGFVILDELGVPYPDDQPCVGEVGLFPLYLGATDR 352
+S M QP+ + + ++ GV D+ GE G L + A+D
Sbjct: 309 AMNSLY---MRQPKTGTEMAPGFFSEVRIVRIGGGV---DEIVANGEEG--ELIVAASDS 360
Query: 353 LLNADHEEVYFSGMPIYKGMHLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIE 412
+ + + G + R D+ T G + + GR DD + GG EIE
Sbjct: 361 AFVGYLNQPEATAEKLQDGWY--RTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIE 418
Query: 413 RVCDGADESILETAAISVSPAGGGPEVLVICVVLKKGFTSQPVDKLKMIFSKAIQRNLNP 472
RV G + E I ++ G V CVV + G T D L + L
Sbjct: 419 RVL-GTAPGVTEVVVIGLADQRWGQSV-TACVVPRLGETLS-ADALDTFCRSS---ELAD 472
Query: 473 LFKVSLVKIVLEFPRTASNKLLRRVLKDQL 502
+ I+ + P+ A NK+LRR L Q+
Sbjct: 473 FKRPKRYFILDQLPKNALNKVLRRQLVQQV 502
>pdb|2VSQ|A Chain A, Structure Of Surfactin A Synthetase C (Srfa-C), A
Nonribosomal Peptide Synthetase Termination Module
Length = 1304
Score = 37.0 bits (84), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 65/278 (23%), Positives = 110/278 (39%), Gaps = 20/278 (7%)
Query: 145 ILFSSGTTGEPKAIPWTQLSPIRCAAEAWGHIDMKVGDVYCWPTNLGWVMGPIILFSSFL 204
I+++SGTTG+PK T + I+ + ++ D + +N + ++S L
Sbjct: 612 IMYTSGTTGKPKGNITTHAN-IQGLVKHVDYMAFSDQDTFLSVSNYAFDAFTFDFYASML 670
Query: 205 SGAALALYHGSPL---ERSFGKFVQDSGVSVLGTVPSLVKAWKNTNCLQGLDWTK-IRSF 260
+ A L + L ER +Q++ V+V+ +L + G DW K +R
Sbjct: 671 NAARLIIADEHTLLDTERLTDLILQEN-VNVMFATTALFNLLTDA----GEDWMKGLRCI 725
Query: 261 ASTGETSNVDDDLWLASKAYYKPIIECCGGTE---LASSYIQGSMLQPQAFGAFSTATMT 317
GE ++V +I C G TE A++++ + +
Sbjct: 726 LFGGERASVPHVRKALRIMGPGKLINCYGPTEGTVFATAHVVHDLPDSISSLPIGKPISN 785
Query: 318 TGFVILDELGVPYPDDQPCVGEVGLFPLY-LGATDRLLN-ADHEEVYFSGMPIYKGMHLR 375
IL+E P G VG + +G + +N AD + F P G L
Sbjct: 786 ASVYILNEQSQLQP-----FGAVGELCISGMGVSKGYVNRADLTKEKFIENPFKPGETLY 840
Query: 376 RHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIER 413
R GD+ + G I GR DD + + G + EIE+
Sbjct: 841 RTGDLARWLPDGTIEYAGRIDDQVKIRGHRIELEEIEK 878
>pdb|2QVX|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATION,
BOUND TO 3- Chlorobenzoate
pdb|2QVY|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATION,
BOUND TO 3,4- Dichlorobenzoate
Length = 504
Score = 36.2 bits (82), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 95/390 (24%), Positives = 146/390 (37%), Gaps = 38/390 (9%)
Query: 125 YHPGPKYYPPVYRPVDSVINILFSSGTTGEPKAIPWTQLSPIRCAAEAWGHIDMKVG--- 181
Y GP P P I ++SGTTG PKA + P R A + +VG
Sbjct: 139 YSYGPPIEDPQREPAQPAF-IFYTSGTTGLPKA----AIIPQRAAESRVLFMSTQVGLRH 193
Query: 182 ---DVYCWPTNLGWVMG--PIILFSSFLSGAALALYHGSPLERSFGKFVQDSGVSVLGTV 236
+V L V+G +++ + L G + + P++ + VQ V+ L
Sbjct: 194 GRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDAL--QLVQQEQVTSLFAT 251
Query: 237 PSLVKAWKNTNCLQG--LDWTKIRSFASTGETSNVDDDLWLASKAYYKP--IIECCGGTE 292
P+ + A G L +R G T D L + + P + G TE
Sbjct: 252 PTHLDALAAAAAHAGSSLKLDSLRHVTFAGATM---PDAVLETVHQHLPGEKVNGYGTTE 308
Query: 293 LASSYIQGSMLQPQAFGAFSTATMTTGFVILDELGVPYPDDQPCVGEVGLFPLYLGATDR 352
+S M QP+ + + ++ GV D+ GE G L + A+D
Sbjct: 309 AMNSLY---MRQPKTGTEMAPGFFSEVRIVRIGGGV---DEIVANGEEG--ELIVAASDS 360
Query: 353 LLNADHEEVYFSGMPIYKGMHLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIE 412
+ + + G + R D+ T G + + GR DD + GG EIE
Sbjct: 361 AFVGYLNQPQATAEKLQDGWY--RTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIE 418
Query: 413 RVCDGADESILETAAISVSPAGGGPEVLVICVVLKKGFTSQPVDKLKMIFSKAIQRNLNP 472
RV G + E I ++ G V CVV + G T D L + L
Sbjct: 419 RVL-GTAPGVTEVVVIGLADQRWGQSV-TACVVPRLGETLS-ADALDTFCRSS---ELAD 472
Query: 473 LFKVSLVKIVLEFPRTASNKLLRRVLKDQL 502
+ I+ + P+ A NK+LRR L Q+
Sbjct: 473 FKRPKRYFILDQLPKNALNKVLRRQLVQQV 502
>pdb|1T5H|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE UNLIGANDED,
SELENOMETHIONINE
Length = 504
Score = 35.8 bits (81), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 53/127 (41%), Gaps = 6/127 (4%)
Query: 376 RHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDGADESILETAAISVSPAGG 435
R D+ T G + + GR DD + GG EIERV G + E I ++
Sbjct: 382 RTSDVAVWTPEGTVRILGRVDDXIISGGENIHPSEIERVL-GTAPGVTEVVVIGLADQRW 440
Query: 436 GPEVLVICVVLKKGFTSQPVDKLKMIFSKAIQRNLNPLFKVSLVKIVLEFPRTASNKLLR 495
G V CVV + G T D L + L + I+ + P+ A NK+LR
Sbjct: 441 GQSV-TACVVPRLGETLS-ADALDTFCRSS---ELADFKRPKRYFILDQLPKNALNKVLR 495
Query: 496 RVLKDQL 502
R L Q+
Sbjct: 496 RQLVQQV 502
>pdb|3DLP|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, MUTANT D402P, BOUND
To 4cb
Length = 504
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 94/390 (24%), Positives = 145/390 (37%), Gaps = 38/390 (9%)
Query: 125 YHPGPKYYPPVYRPVDSVINILFSSGTTGEPKAIPWTQLSPIRCAAEAWGHIDMKVG--- 181
Y GP P P I ++SGTTG PKA + P R A + +VG
Sbjct: 139 YSYGPPIEDPQREPAQPAF-IFYTSGTTGLPKA----AIIPQRAAESRVLFMSTQVGLRH 193
Query: 182 ---DVYCWPTNLGWVMG--PIILFSSFLSGAALALYHGSPLERSFGKFVQDSGVSVLGTV 236
+V L V+G +++ + L G + + P++ + VQ V+ L
Sbjct: 194 GRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDAL--QLVQQEQVTSLFAT 251
Query: 237 PSLVKAWKNTNCLQG--LDWTKIRSFASTGETSNVDDDLWLASKAYYKP--IIECCGGTE 292
P+ + A G L +R G T D L + + P + G TE
Sbjct: 252 PTHLDALAAAAAHAGSSLKLDSLRHVTFAGATM---PDAVLETVHQHLPGEKVNIYGTTE 308
Query: 293 LASSYIQGSMLQPQAFGAFSTATMTTGFVILDELGVPYPDDQPCVGEVGLFPLYLGATDR 352
+S M QP+ + + ++ GV D+ GE G L + A+D
Sbjct: 309 AMNSLY---MRQPKTGTEMAPGFFSEVRIVRIGGGV---DEIVANGEEG--ELIVAASDS 360
Query: 353 LLNADHEEVYFSGMPIYKGMHLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIE 412
+ + + G + R D+ T G + + GR D + GG EIE
Sbjct: 361 AFVGYLNQPQATAEKLQDGWY--RTSDVAVWTPEGTVRILGRVPDMIISGGENIHPSEIE 418
Query: 413 RVCDGADESILETAAISVSPAGGGPEVLVICVVLKKGFTSQPVDKLKMIFSKAIQRNLNP 472
RV G + E I ++ G V CVV + G T D L + L
Sbjct: 419 RVL-GTAPGVTEVVVIGLADQRWGQSV-TACVVPRLGETLS-ADALDTFCRSS---ELAD 472
Query: 473 LFKVSLVKIVLEFPRTASNKLLRRVLKDQL 502
+ I+ + P+ A NK+LRR L Q+
Sbjct: 473 FKRPKRYFILDQLPKNALNKVLRRQLVQQV 502
>pdb|4DG8|A Chain A, Structure Of Pa1221, An Nrps Protein Containing
Adenylation And Pcp Domains
pdb|4DG9|A Chain A, Structure Of Holo-Pa1221, An Nrps Protein Containing
Adenylation And Pcp Domains Bound To Vinylsulfonamide
Inhibitor
Length = 620
Score = 33.5 bits (75), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 22/46 (47%), Gaps = 3/46 (6%)
Query: 120 LSCVDYHPGPKYYPPVYRPV---DSVINILFSSGTTGEPKAIPWTQ 162
L CV P V RP D + I FSSGTTG PKAI T
Sbjct: 141 LPCVPVRHLPAAPASVARPCFAADQIAYINFSSGTTGRPKAIACTH 186
>pdb|4GXQ|A Chain A, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
pdb|4GXQ|B Chain B, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
pdb|4GXQ|C Chain C, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
Length = 506
Score = 33.1 bits (74), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 53/140 (37%), Gaps = 9/140 (6%)
Query: 366 MPIYKGMHLRRHGDIIKRTVG-----GYIIVQGRADDTMNLGGIKTSSVEIERVCDGADE 420
MP R G I +G GY+ + GR D + GG EIE D A
Sbjct: 364 MPEXTXSEFRDDGFFITGDLGXIDERGYVHILGRGXDLVITGGFNVYPXEIESEID-AMP 422
Query: 421 SILETAAISVSPAGGGPEVLVICVVLKKGFTSQPVDKLKMIFSKAIQRNLNPLFKVSLVK 480
++E+A I V A G E + VVL + F P + L + L V
Sbjct: 423 GVVESAVIGVPHADFG-EGVTAFVVLXREFA--PSEILAEELXAFVXDRLAXFXMPXXVI 479
Query: 481 IVLEFPRTASNKLLRRVLKD 500
V + PR + VL++
Sbjct: 480 FVDDLPRNTMGAVQXNVLRE 499
>pdb|4GR4|A Chain A, Crystal Structure Of Slgn1deltaasub
pdb|4GR4|B Chain B, Crystal Structure Of Slgn1deltaasub
pdb|4GR4|C Chain C, Crystal Structure Of Slgn1deltaasub
pdb|4GR4|D Chain D, Crystal Structure Of Slgn1deltaasub
Length = 469
Score = 32.3 bits (72), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 48/108 (44%), Gaps = 12/108 (11%)
Query: 140 DSVINILFSSGTTGEPKAIPWTQLSPIRCAAEAW---GHIDMKVGDVYCWPTNLGWVMGP 196
+ V ++F+SG+TG PK + +SP R + + +V+ + + W
Sbjct: 214 EDVACVMFTSGSTGRPKGV----MSPHRALTGTYLGQDYAGFGPDEVFLQCSPVSWDAFG 269
Query: 197 IILFSSFLSGAALALYHGS---PLERSFGKFVQDSGVSVLGTVPSLVK 241
+ LF + L GA L G PLE G+ V GV++L SL
Sbjct: 270 LELFGALLFGARCVLQSGQNPDPLE--IGELVARHGVTMLQLSASLFN 315
>pdb|4G37|A Chain A, Structure Of Cross-Linked Firefly Luciferase In Second
Catalytic Conformation
pdb|4G37|B Chain B, Structure Of Cross-Linked Firefly Luciferase In Second
Catalytic Conformation
Length = 555
Score = 31.6 bits (70), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 64/312 (20%), Positives = 113/312 (36%), Gaps = 34/312 (10%)
Query: 1 MSYRLVANALDTMFSKGDAIAIDMPMTVHAVIIYLAIILAGYVVVSIADSFAAREIATRL 60
MS RL + I + ++ + L + G V D + RE+ +
Sbjct: 64 MSVRLAEAMKRYGLNTNHRIVVSSENSLQFFMPVLGALFIGVAVAPANDCYNERELLNSM 123
Query: 61 RVSKAKGIFTQ----DFILRGGRKFPLYSKVAEAGPLKAVVLPVIGDDVGIQLRQQDVSW 116
+S+ +F IL +K P+ K+ +++ D G Q S
Sbjct: 124 NISQPTVVFVSKKGLQKILNVQKKLPIIQKI--------IIMDSKTDYQGFQ------SM 169
Query: 117 KDFLSCVDYHPGPKYY---PPVYRPVDSVINILFSSGTTGEPKAIPWTQLSPIRCAAEAW 173
F++ PG Y P + ++ I+ SSG+TG PK + P R A +
Sbjct: 170 YTFVTS-HLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVAL----PHRALAVRF 224
Query: 174 GHI-DMKVGDVYCWPTNLGWVM------GPIILFSSFLSGAALALYHGSPLERSFGKFVQ 226
H D G+ T + V+ G +SG + L + E F + +Q
Sbjct: 225 SHARDPIFGNQIAPDTAILSVVPFHHGFGMFTTLGYLISGFRVVLMYRFE-EELFLRSLQ 283
Query: 227 DSGVSVLGTVPSLVKAWKNTNCLQGLDWTKIRSFASTGETSNVDDDLWLASKAYYKPIIE 286
D + VP+L + + D + + AS G + + +A + + I +
Sbjct: 284 DYKIQSALLVPTLFSFLAKSTLIDKYDLSNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQ 343
Query: 287 CCGGTELASSYI 298
G TE S+ +
Sbjct: 344 GYGLTETTSAIL 355
>pdb|4GXR|A Chain A, Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3
Length = 503
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 51/140 (36%), Gaps = 12/140 (8%)
Query: 366 MPIYKGMHLRRHGDIIKRTVG-----GYIIVQGRADDTMNLGGIKTSSVEIERVCDGADE 420
MP R G I +G GY+ + GR D + GG EIE D A
Sbjct: 364 MPEXTXSEFRDDGFFITGDLGXIDERGYVHILGRGXDLVITGGFNVYPXEIESEID-AMP 422
Query: 421 SILETAAISVSPAGGGPEVLVICVVLKKGFTSQPVDKLKMIFSKAIQRNLNPLFKVSLVK 480
++E+A I V A G E + VVL + F L + L V
Sbjct: 423 GVVESAVIGVPHADFG-EGVTAFVVLXREFAPSEAQVL-----HGLDGQLAXFXMPXXVI 476
Query: 481 IVLEFPRTASNKLLRRVLKD 500
V + PR + VL++
Sbjct: 477 FVDDLPRNTMGAVQXNVLRE 496
>pdb|3E7W|A Chain A, Crystal Structure Of Dlta: Implications For The Reaction
Mechanism Of Non-Ribosomal Peptide Synthetase (Nrps)
Adenylation Domains
pdb|3E7X|A Chain A, Crystal Structure Of Dlta: Implications For The Reaction
Mechanism Of Non-Ribosomal Peptide Synthetase (Nrps)
Adenylation Domains
Length = 511
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 68/290 (23%), Positives = 107/290 (36%), Gaps = 45/290 (15%)
Query: 145 ILFSSGTTGEPKAIPWTQLSPIRCAA-EAWGHIDMKV--GDVYCWPTNLGWVMGPIILFS 201
I+++SG+TG PK + Q+S + W D V G ++ + + + L+
Sbjct: 148 IIYTSGSTGNPKGV---QISAANLQSFTDWICADFPVSGGKIFLNQAPFSFDLSVMDLYP 204
Query: 202 SFLSGAALALYHGSPLERSFGKF--VQDSGVSVLGTVPSLVKAWKNTNCLQGLDWTK--- 256
SG L + + F ++ SG++V + PS V+ CL +++
Sbjct: 205 CLQSGGTLHCVTKDAVNKPKVLFEELKKSGLNVWTSTPSFVQM-----CLMDPGFSQDLL 259
Query: 257 --IRSFASTGETSNVDDDLWLASKAYYKPIIECCGGTE----LASSYIQGSMLQPQAFGA 310
+F GE V L + I G TE + S I ++
Sbjct: 260 PHADTFMFCGEVLPVSVAKALLERFPKAKIFNTYGPTEATVAVTSVEITNDVISRSESLP 319
Query: 311 FSTATMTTGFVILDELGVPYPDDQPCVGEVGLFPL--------YLGATDRLLNADHEEVY 362
A I+DE G P P+ GE G + YLG + E+ +
Sbjct: 320 VGFAKPDMNIFIMDEEGQPLPE-----GEKGEIVIAGPSVSRGYLGEPELT-----EKAF 369
Query: 363 FSGMPIYKGMHLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIE 412
FS ++G R GD G I QGR D + L G + EIE
Sbjct: 370 FS----HEGQWAYRTGD-AGFIQDGQIFCQGRLDFQIKLHGYRMELEEIE 414
>pdb|4FUT|A Chain A, Crystal Structure Of Atp Bound Matb From Rhodopseudomonas
Palustris
Length = 503
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 55/140 (39%), Gaps = 12/140 (8%)
Query: 366 MPIYKGMHLRRHGDIIKRTVG-----GYIIVQGRADDTMNLGGIKTSSVEIERVCDGADE 420
MP R G I +G GY+ + GR D + GG EIE D A
Sbjct: 364 MPEXTXSEFRDDGFFITGDLGXIDERGYVHILGRGXDLVITGGFNVYPXEIESEID-AMP 422
Query: 421 SILETAAISVSPAGGGPEVLVICVVLKKGFTSQPVDKLKMIFSKAIQRNLNPLFKVSLVK 480
++E+A I V A G E + VV G T +D+ +++ + L V
Sbjct: 423 GVVESAVIGVPHADFG-EGVTAVVVRDXGAT---IDEAQVL--HGLDGQLAXFXMPXXVI 476
Query: 481 IVLEFPRTASNKLLRRVLKD 500
V + PR + VL++
Sbjct: 477 FVDDLPRNTMGAVQXNVLRE 496
>pdb|3IPL|A Chain A, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase
From Staphylococcus Aureus Subsp. Aureus Mu50
pdb|3IPL|B Chain B, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase
From Staphylococcus Aureus Subsp. Aureus Mu50
pdb|3IPL|C Chain C, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase
From Staphylococcus Aureus Subsp. Aureus Mu50
Length = 501
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 18/23 (78%)
Query: 139 VDSVINILFSSGTTGEPKAIPWT 161
+D + +I+F+SGTTG KA+P T
Sbjct: 162 LDDIASIMFTSGTTGPQKAVPQT 184
>pdb|3FCC|A Chain A, Crystal Structure Of Dlta Protein In Complex With Atp And
Magnesium
pdb|3FCE|A Chain A, Crystal Structure Of Bacillus Cereus D-Alanyl Carrier
Protein Ligase Dlta In Complex With Atp: Implications
For Adenylation Mechanism
Length = 512
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 21/104 (20%), Positives = 44/104 (42%), Gaps = 2/104 (1%)
Query: 140 DSVINILFSSGTTGEPKAIPWTQLSPIRCAAEAWGHIDMKVGDVYCWPTNLGWVMGPIIL 199
D I+++SG+TG PK + T + A +++ G V+ + + + +
Sbjct: 144 DENFYIIYTSGSTGNPKGVQITYNCLVSFTKWAVEDFNLQTGQVFLNQAPFSFDLSVMDI 203
Query: 200 FSSFLSGAALALYHGSPLERSFGKF--VQDSGVSVLGTVPSLVK 241
+ S ++G L + R F ++ S + V + PS +
Sbjct: 204 YPSLVTGGTLWAIDKDMIARPKDLFASLEQSDIQVWTSTPSFAE 247
>pdb|3DHV|A Chain A, Crystal Structure Of Dlta Protein In Complex With
D-Alanine Adenylate
Length = 512
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 21/104 (20%), Positives = 44/104 (42%), Gaps = 2/104 (1%)
Query: 140 DSVINILFSSGTTGEPKAIPWTQLSPIRCAAEAWGHIDMKVGDVYCWPTNLGWVMGPIIL 199
D I+++SG+TG PK + T + A +++ G V+ + + + +
Sbjct: 144 DENFYIIYTSGSTGNPKGVQITYNCLVSFTKWAVEDFNLQTGQVFLNQAPFSFDLSVMDI 203
Query: 200 FSSFLSGAALALYHGSPLERSFGKF--VQDSGVSVLGTVPSLVK 241
+ S ++G L + R F ++ S + V + PS +
Sbjct: 204 YPSLVTGGTLWAIDKDMIARPKDLFASLEQSDIQVWTSTPSFAE 247
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.139 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,487,524
Number of Sequences: 62578
Number of extensions: 688824
Number of successful extensions: 1298
Number of sequences better than 100.0: 43
Number of HSP's better than 100.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 1192
Number of HSP's gapped (non-prelim): 72
length of query: 512
length of database: 14,973,337
effective HSP length: 103
effective length of query: 409
effective length of database: 8,527,803
effective search space: 3487871427
effective search space used: 3487871427
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)