Query 010344
Match_columns 512
No_of_seqs 180 out of 1225
Neff 10.5
Searched_HMMs 29240
Date Mon Mar 25 04:46:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010344.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010344hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1pg4_A Acetyl-COA synthetase; 100.0 8.4E-74 2.9E-78 599.0 45.1 488 2-506 116-623 (652)
2 3ni2_A 4-coumarate:COA ligase; 100.0 4.4E-74 1.5E-78 589.5 41.1 466 2-504 58-535 (536)
3 4fuq_A Malonyl COA synthetase; 100.0 2.5E-73 8.5E-78 579.0 42.5 462 2-506 37-502 (503)
4 3etc_A AMP-binding protein; ad 100.0 5.8E-73 2E-77 584.7 45.5 473 2-504 95-579 (580)
5 3g7s_A Long-chain-fatty-acid-- 100.0 2.8E-73 9.5E-78 585.3 39.3 473 2-508 61-546 (549)
6 2d1s_A Luciferase, luciferin 4 100.0 1.1E-72 3.6E-77 580.1 43.2 477 2-508 61-547 (548)
7 1ry2_A Acetyl-coenzyme A synth 100.0 6.4E-73 2.2E-77 592.4 40.1 489 2-505 122-638 (663)
8 3e7w_A D-alanine--poly(phospho 100.0 1E-71 3.4E-76 569.0 43.6 464 2-508 35-507 (511)
9 1mdb_A 2,3-dihydroxybenzoate-A 100.0 1.9E-72 6.4E-77 577.4 38.5 471 2-509 59-536 (539)
10 3fce_A D-alanine--poly(phospho 100.0 1.1E-72 3.8E-77 576.4 36.2 466 2-508 35-508 (512)
11 3r44_A Fatty acyl COA syntheta 100.0 1.5E-72 5.1E-77 575.2 36.6 462 2-507 52-516 (517)
12 3rix_A Luciferase, luciferin 4 100.0 8.6E-73 2.9E-77 581.7 32.9 479 2-509 59-546 (550)
13 1v25_A Long-chain-fatty-acid-C 100.0 1.7E-72 5.7E-77 578.1 33.3 467 2-507 56-539 (541)
14 1t5h_X 4-chlorobenzoyl COA lig 100.0 6.9E-71 2.4E-75 561.8 44.2 452 2-503 38-503 (504)
15 3c5e_A Acyl-coenzyme A synthet 100.0 1.5E-70 5.2E-75 565.9 46.9 469 2-504 82-562 (570)
16 3l8c_A D-alanine--poly(phospho 100.0 3.1E-71 1.1E-75 567.2 38.3 468 2-509 38-517 (521)
17 3o83_A Peptide arylation enzym 100.0 4.5E-72 1.5E-76 575.3 29.7 472 2-505 64-541 (544)
18 1amu_A GRSA, gramicidin synthe 100.0 1.3E-70 4.4E-75 565.6 39.7 447 2-502 73-527 (563)
19 2v7b_A Benzoate-coenzyme A lig 100.0 7.2E-70 2.5E-74 558.0 42.8 466 2-500 57-528 (529)
20 4gr5_A Non-ribosomal peptide s 100.0 2.5E-71 8.4E-76 573.0 29.7 452 2-501 109-568 (570)
21 3rg2_A Enterobactin synthase c 100.0 3.5E-69 1.2E-73 561.8 42.6 469 2-506 59-536 (617)
22 3ivr_A Putative long-chain-fat 100.0 1.1E-70 3.7E-75 561.3 28.2 463 2-509 40-506 (509)
23 4dg8_A PA1221; ANL superfamily 100.0 2.2E-69 7.5E-74 560.9 37.3 446 2-506 61-515 (620)
24 3tsy_A Fusion protein 4-coumar 100.0 5.8E-70 2E-74 596.3 32.3 477 2-507 97-585 (979)
25 3ipl_A 2-succinylbenzoate--COA 100.0 6.8E-68 2.3E-72 539.9 38.3 461 2-505 35-498 (501)
26 3nyq_A Malonyl-COA ligase; A/B 100.0 1.8E-68 6.1E-73 543.2 33.7 431 14-500 65-504 (505)
27 2vsq_A Surfactin synthetase su 100.0 9.4E-67 3.2E-71 584.6 37.8 455 2-503 498-959 (1304)
28 3ite_A SIDN siderophore synthe 100.0 3.2E-67 1.1E-71 542.3 31.3 459 2-504 64-543 (562)
29 3kxw_A Saframycin MX1 syntheta 100.0 1.3E-66 4.4E-71 541.7 33.0 465 2-505 49-568 (590)
30 3gqw_A Fatty acid AMP ligase; 100.0 3.4E-65 1.2E-69 529.8 37.7 460 2-509 58-568 (576)
31 4gs5_A Acyl-COA synthetase (AM 100.0 9E-56 3.1E-60 428.5 21.6 317 140-506 37-356 (358)
32 3t5a_A Long-chain-fatty-acid-- 100.0 7.4E-51 2.5E-55 412.7 21.5 358 2-394 67-480 (480)
33 3qov_A Phenylacetate-coenzyme 100.0 7.6E-50 2.6E-54 399.4 23.8 325 137-496 82-429 (436)
34 2y4o_A Phenylacetate-coenzyme 100.0 1.7E-48 5.8E-53 390.5 24.4 328 137-498 89-438 (443)
35 2y27_A Phenylacetate-coenzyme 100.0 3.2E-48 1.1E-52 387.7 23.8 326 137-497 87-432 (437)
36 3hgu_A EHPF; phenazine, antibi 100.0 9.3E-32 3.2E-36 262.4 16.2 237 137-404 88-368 (369)
37 3gxs_A Phenylacetate-coenzyme 99.6 2.9E-15 9.8E-20 117.2 7.9 97 393-496 1-102 (109)
38 3lax_A Phenylacetate-coenzyme 99.6 5E-15 1.7E-19 116.1 7.4 96 393-495 1-101 (109)
39 4b2g_A GH3-1 auxin conjugating 99.0 1.2E-08 4.3E-13 102.1 18.3 71 375-447 412-493 (609)
40 4eql_A 4-substituted benzoates 99.0 6E-09 2.1E-13 104.2 14.6 133 254-418 296-447 (581)
41 4epl_A Jasmonic acid-amido syn 98.9 2.2E-08 7.6E-13 99.9 16.5 162 254-448 301-489 (581)
42 3rix_A Luciferase, luciferin 4 80.7 2.8 9.5E-05 42.1 7.0 84 159-243 50-136 (550)
43 3ni2_A 4-coumarate:COA ligase; 78.2 6.9 0.00024 39.0 8.9 97 138-242 35-134 (536)
44 3g7s_A Long-chain-fatty-acid-- 77.3 9.8 0.00033 38.0 9.8 103 138-243 32-138 (549)
45 1v25_A Long-chain-fatty-acid-C 76.0 11 0.00038 37.6 9.7 99 139-243 32-133 (541)
46 3ivr_A Putative long-chain-fat 75.6 8.4 0.00029 38.0 8.7 95 138-242 19-116 (509)
47 3t5a_A Long-chain-fatty-acid-- 73.2 16 0.00056 35.5 10.0 107 138-246 37-149 (480)
48 1t5h_X 4-chlorobenzoyl COA lig 70.9 15 0.00052 36.1 9.2 98 138-243 15-117 (504)
49 3c5e_A Acyl-coenzyme A synthet 69.9 19 0.00065 36.1 9.8 101 138-243 56-160 (570)
50 2y27_A Phenylacetate-coenzyme 69.7 19 0.00064 34.6 9.4 66 7-73 123-191 (437)
51 3etc_A AMP-binding protein; ad 68.3 16 0.00055 36.8 8.9 95 138-237 69-166 (580)
52 1amu_A GRSA, gramicidin synthe 67.9 19 0.00064 36.1 9.2 83 159-242 64-149 (563)
53 3vc3_A Beta-cyanoalnine syntha 67.4 16 0.00056 33.9 8.0 70 3-72 71-141 (344)
54 2y4o_A Phenylacetate-coenzyme 67.2 22 0.00076 34.2 9.4 66 7-73 125-193 (443)
55 3tsy_A Fusion protein 4-coumar 67.1 17 0.0006 39.3 9.3 95 138-240 74-171 (979)
56 2d1s_A Luciferase, luciferin 4 66.2 11 0.00037 37.7 7.0 83 159-242 52-137 (548)
57 3qov_A Phenylacetate-coenzyme 65.7 23 0.00079 34.0 9.1 67 6-73 118-187 (436)
58 1ry2_A Acetyl-coenzyme A synth 64.4 19 0.00066 36.9 8.6 97 138-238 95-195 (663)
59 1pg4_A Acetyl-COA synthetase; 64.2 25 0.00087 35.9 9.5 95 139-237 90-187 (652)
60 3kxw_A Saframycin MX1 syntheta 62.6 40 0.0014 33.8 10.6 101 138-244 24-130 (590)
61 4gr5_A Non-ribosomal peptide s 61.7 25 0.00086 35.2 8.8 92 138-239 88-182 (570)
62 4fuq_A Malonyl COA synthetase; 61.2 16 0.00054 36.0 7.1 80 159-239 28-110 (503)
63 2v7b_A Benzoate-coenzyme A lig 60.5 19 0.00066 35.6 7.7 82 159-241 48-132 (529)
64 3ezx_A MMCP 1, monomethylamine 60.2 57 0.002 27.7 9.5 90 182-273 93-193 (215)
65 3o83_A Peptide arylation enzym 60.1 25 0.00086 35.0 8.4 90 138-237 43-135 (544)
66 3tbh_A O-acetyl serine sulfhyd 59.4 28 0.00097 32.1 8.0 67 6-72 59-126 (334)
67 3r44_A Fatty acyl COA syntheta 57.1 24 0.00081 34.8 7.6 95 138-240 29-126 (517)
68 3fce_A D-alanine--poly(phospho 54.8 33 0.0011 33.7 8.1 77 159-236 26-105 (512)
69 3ipl_A 2-succinylbenzoate--COA 52.8 23 0.00079 34.7 6.6 78 159-237 26-103 (501)
70 3gqw_A Fatty acid AMP ligase; 46.7 41 0.0014 33.5 7.5 85 158-243 48-142 (576)
71 3ite_A SIDN siderophore synthe 45.9 79 0.0027 31.4 9.4 97 138-237 33-134 (562)
72 2cvi_A 75AA long hypothetical 45.6 72 0.0024 22.0 6.9 46 408-466 15-60 (83)
73 3l8c_A D-alanine--poly(phospho 45.5 37 0.0013 33.4 6.9 78 159-237 29-109 (521)
74 1mdb_A 2,3-dihydroxybenzoate-A 44.2 42 0.0014 33.3 7.0 79 158-237 49-130 (539)
75 4aec_A Cysteine synthase, mito 40.7 80 0.0027 30.2 7.9 67 6-72 162-229 (430)
76 4h1h_A LMO1638 protein; MCCF-l 40.3 1.1E+02 0.0038 27.9 8.7 60 14-73 9-87 (327)
77 1eg5_A Aminotransferase; PLP-d 40.0 1.3E+02 0.0046 27.5 9.6 57 15-72 87-147 (384)
78 1z7w_A Cysteine synthase; tran 39.0 91 0.0031 28.3 7.9 67 6-72 54-121 (322)
79 3dwg_A Cysteine synthase B; su 38.6 1.1E+02 0.0038 27.9 8.4 66 6-72 61-127 (325)
80 4dg8_A PA1221; ANL superfamily 37.9 54 0.0019 33.2 6.8 77 159-236 52-131 (620)
81 1zsy_A Mitochondrial 2-enoyl t 36.3 1.3E+02 0.0045 27.6 8.8 57 14-71 165-223 (357)
82 2q3b_A Cysteine synthase A; py 36.3 1.2E+02 0.0042 27.3 8.3 58 14-72 64-121 (313)
83 3dzz_A Putative pyridoxal 5'-p 35.5 1.1E+02 0.0038 28.2 8.3 56 14-72 106-168 (391)
84 3rg2_A Enterobactin synthase c 35.4 77 0.0026 32.0 7.4 89 139-237 39-130 (617)
85 4hvk_A Probable cysteine desul 35.3 1.5E+02 0.0053 27.0 9.2 57 15-72 86-146 (382)
86 1wy5_A TILS, hypothetical UPF0 34.5 1.7E+02 0.0059 26.4 9.0 68 4-71 9-91 (317)
87 2pqm_A Cysteine synthase; OASS 34.4 1.3E+02 0.0046 27.6 8.3 58 14-72 75-132 (343)
88 4eb5_A Probable cysteine desul 34.4 1.3E+02 0.0043 27.7 8.4 56 15-71 86-145 (382)
89 3a2k_A TRNA(Ile)-lysidine synt 34.2 1.4E+02 0.0047 28.9 8.6 69 4-72 3-86 (464)
90 3zrp_A Serine-pyruvate aminotr 34.2 1.7E+02 0.0058 26.8 9.3 59 14-73 74-136 (384)
91 2v03_A Cysteine synthase B; py 33.1 1.7E+02 0.0057 26.3 8.6 58 14-72 58-115 (303)
92 3sr3_A Microcin immunity prote 32.7 1.7E+02 0.0059 26.8 8.6 60 14-73 10-88 (336)
93 4e5s_A MCCFLIKE protein (BA_56 32.7 1.9E+02 0.0063 26.5 8.8 60 14-73 9-87 (331)
94 2egu_A Cysteine synthase; O-ac 32.3 1.3E+02 0.0046 26.9 7.9 58 14-72 62-119 (308)
95 3nyq_A Malonyl-COA ligase; A/B 31.6 67 0.0023 31.4 6.1 78 158-238 47-124 (505)
96 3lvm_A Cysteine desulfurase; s 31.6 2.3E+02 0.0078 26.4 9.8 58 14-72 110-171 (423)
97 3ri6_A O-acetylhomoserine sulf 31.4 1.7E+02 0.0057 27.9 8.7 57 14-72 118-175 (430)
98 3a2b_A Serine palmitoyltransfe 31.3 2.2E+02 0.0074 26.4 9.5 56 14-73 124-182 (398)
99 3tla_A MCCF; serine protease, 30.7 1.7E+02 0.0059 27.2 8.3 60 14-73 40-118 (371)
100 2zbc_A 83AA long hypothetical 30.7 1.3E+02 0.0043 20.4 6.6 46 408-466 15-60 (83)
101 3hgu_A EHPF; phenazine, antibi 30.5 1.1E+02 0.0038 28.2 7.2 59 14-74 132-215 (369)
102 2zzt_A Putative uncharacterize 30.3 1.6E+02 0.0054 21.5 7.0 63 407-471 11-73 (107)
103 3e7w_A D-alanine--poly(phospho 30.3 67 0.0023 31.4 5.9 78 158-236 25-106 (511)
104 3kki_A CAI-1 autoinducer synth 29.9 3.2E+02 0.011 25.3 10.5 57 14-74 140-196 (409)
105 1y7l_A O-acetylserine sulfhydr 29.1 1.7E+02 0.006 26.3 8.1 58 14-72 59-116 (316)
106 2e7j_A SEP-tRNA:Cys-tRNA synth 29.0 2.4E+02 0.0082 25.6 9.3 57 14-73 90-156 (371)
107 3ju7_A Putative PLP-dependent 27.5 1.6E+02 0.0055 27.3 7.7 64 5-71 65-136 (377)
108 3n75_A LDC, lysine decarboxyla 27.3 2.4E+02 0.0083 29.0 9.4 56 14-72 232-306 (715)
109 1elu_A L-cysteine/L-cystine C- 27.1 1.6E+02 0.0054 27.1 7.7 67 6-73 89-163 (390)
110 1ve1_A O-acetylserine sulfhydr 26.7 2.5E+02 0.0084 25.1 8.6 59 14-73 57-117 (304)
111 4eez_A Alcohol dehydrogenase 1 26.2 1.2E+02 0.0042 27.6 6.6 61 9-72 155-216 (348)
112 1o69_A Aminotransferase; struc 26.1 3.2E+02 0.011 25.2 9.7 65 5-72 59-130 (394)
113 1yj7_A ESCJ; mixed alpha/beta, 26.1 1.7E+02 0.0057 23.8 6.4 71 408-484 92-164 (171)
114 3pc3_A CG1753, isoform A; CBS, 26.1 1.9E+02 0.0064 28.5 8.2 65 7-72 102-167 (527)
115 3kax_A Aminotransferase, class 25.7 2.4E+02 0.0081 25.8 8.6 55 14-72 103-164 (383)
116 2ch1_A 3-hydroxykynurenine tra 25.4 2.2E+02 0.0076 26.1 8.4 58 14-72 90-151 (396)
117 3t18_A Aminotransferase class 25.4 2.5E+02 0.0084 26.1 8.8 55 14-71 122-185 (413)
118 3tqh_A Quinone oxidoreductase; 25.1 2.2E+02 0.0075 25.6 8.0 59 9-72 144-204 (321)
119 2djw_A Probable transcriptiona 24.7 1E+02 0.0034 21.7 4.5 33 408-447 15-47 (92)
120 4dq6_A Putative pyridoxal phos 24.4 1.7E+02 0.0057 26.9 7.3 54 14-72 111-172 (391)
121 1d2f_A MALY protein; aminotran 24.0 2.3E+02 0.008 26.0 8.3 55 14-71 108-169 (390)
122 3ecd_A Serine hydroxymethyltra 23.5 2E+02 0.007 26.7 7.8 59 14-72 115-180 (425)
123 1e5e_A MGL, methionine gamma-l 23.3 2.3E+02 0.0079 26.5 8.1 57 14-72 98-155 (404)
124 2a7v_A Serine hydroxymethyltra 23.2 88 0.003 30.6 5.1 60 14-73 141-212 (490)
125 3cq5_A Histidinol-phosphate am 22.8 2.7E+02 0.0091 25.4 8.3 56 14-72 113-172 (369)
126 2z9v_A Aspartate aminotransfer 22.7 2.3E+02 0.008 26.0 8.0 58 14-72 80-142 (392)
127 3isl_A Purine catabolism prote 22.6 2.7E+02 0.0091 25.8 8.4 58 14-72 83-144 (416)
128 3euc_A Histidinol-phosphate am 22.5 2.2E+02 0.0076 25.8 7.7 56 14-72 106-165 (367)
129 1h2b_A Alcohol dehydrogenase; 22.4 2E+02 0.0068 26.4 7.2 60 9-71 176-238 (359)
130 1c7n_A Cystalysin; transferase 22.2 2.1E+02 0.0072 26.4 7.6 55 14-71 110-171 (399)
131 3ndn_A O-succinylhomoserine su 22.1 3.3E+02 0.011 25.6 8.9 57 14-72 117-174 (414)
132 3rq1_A Aminotransferase class 22.0 3.3E+02 0.011 25.3 9.0 55 14-71 123-186 (418)
133 2vyc_A Biodegradative arginine 21.5 4.5E+02 0.015 27.2 10.3 47 14-63 242-302 (755)
134 2i2x_B MTAC, methyltransferase 21.5 2E+02 0.0068 25.1 6.6 91 179-273 121-220 (258)
135 3gbx_A Serine hydroxymethyltra 21.4 1.9E+02 0.0064 26.9 7.1 59 14-72 113-177 (420)
136 4h27_A L-serine dehydratase/L- 21.1 1.6E+02 0.0055 27.3 6.2 60 14-73 89-148 (364)
137 2rkb_A Serine dehydratase-like 21.1 1.8E+02 0.0062 26.2 6.5 57 17-73 53-109 (318)
138 2jtq_A Phage shock protein E; 21.0 2E+02 0.0069 19.5 5.7 40 4-43 27-67 (85)
139 1jbq_A B, cystathionine beta-s 20.9 3.7E+02 0.013 25.6 8.8 58 14-72 158-215 (435)
140 3s2e_A Zinc-containing alcohol 20.7 2.4E+02 0.0083 25.5 7.5 61 8-72 157-218 (340)
141 3two_A Mannitol dehydrogenase; 20.7 2.3E+02 0.0078 25.8 7.3 58 8-69 167-225 (348)
142 3kgw_A Alanine-glyoxylate amin 20.5 3.1E+02 0.011 25.0 8.4 59 14-73 95-157 (393)
143 1vjo_A Alanine--glyoxylate ami 20.2 3.3E+02 0.011 24.9 8.4 58 14-72 106-167 (393)
144 2bkw_A Alanine-glyoxylate amin 20.2 4E+02 0.014 24.1 9.0 57 15-72 84-145 (385)
No 1
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Probab=100.00 E-value=8.4e-74 Score=599.00 Aligned_cols=488 Identities=25% Similarity=0.367 Sum_probs=389.4
Q ss_pred cHHHHHHHHhcc-CCCCCEEEEEcCCCHHHHHHHHHHHHhcceEeecCCCcCHHHHHHHHHhcCccEEEeccchhccCcc
Q 010344 2 SYRLVANALDTM-FSKGDAIAIDMPMTVHAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRK 80 (512)
Q Consensus 2 ~~~~~a~~L~~~-i~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~iv~~~~~~~~~~~ 80 (512)
.++++|++|++. +++||+|+|+++|++++++++|||+++|++++|+++.++.+++.+++++++++++|+++......+.
T Consensus 116 ~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~ 195 (652)
T 1pg4_A 116 DVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGRS 195 (652)
T ss_dssp HHHHHHHHHHHHTCCTTCEEEEECCSSHHHHHHHHHHHHHTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESEEEETTEE
T ss_pred HHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCCCEEEEcCccccCCcc
Confidence 378999999999 9999999999999999999999999999999999999999999999999999999998764332222
Q ss_pred ccc---hhhHHhcCC----CceEEeeccCCcccccccccCccHHHHhhccCCCCCCCCCCCCCCCCCCeEEEEecCCCCC
Q 010344 81 FPL---YSKVAEAGP----LKAVVLPVIGDDVGIQLRQQDVSWKDFLSCVDYHPGPKYYPPVYRPVDSVINILFSSGTTG 153 (512)
Q Consensus 81 ~~~---~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG 153 (512)
.+. +.......+ ..++++......... .......|.+++..... ........++++++|+|||||||
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-----~~~~~~~~~~d~a~ilyTSGTTG 269 (652)
T 1pg4_A 196 IPLKKNVDDALKNPNVTSVEHVIVLKRTGSDIDW-QEGRDLWWRDLIEKASP-----EHQPEAMNAEDPLFILYTSGSTG 269 (652)
T ss_dssp EESHHHHHHHHTSTTCCSCCEEEEECSSCCCCCC-CBTTEEEHHHHHTTSCS-----CCCCCCEETTSEEEEEEECCSSS
T ss_pred cchHHHHHHHHhcCCcCCCCEEEEEeCCCCcccc-cCCCceeHHHHHhhcCC-----CCCccccCCCCCEEEEeccCCCC
Confidence 222 222222221 122333211111000 01123457777654322 11223345789999999999999
Q ss_pred CCceEEecCchhHHHHHH-hhccccccCCcEEEecCCccchhhh-HHHHhhhccCceEEEecCC---CchhhHHHHHHhc
Q 010344 154 EPKAIPWTQLSPIRCAAE-AWGHIDMKVGDVYCWPTNLGWVMGP-IILFSSFLSGAALALYHGS---PLERSFGKFVQDS 228 (512)
Q Consensus 154 ~pK~v~~s~~~~~~~~~~-~~~~~~~~~~~~~~~~~p~~~~~~~-~~~~~~l~~G~~~~~~~~~---~~~~~~~~~l~~~ 228 (512)
.||||+++|+++...... ....+++.++|++++..|++|..++ +.++.+|+.|+++++.++. .++..+++.|+++
T Consensus 270 ~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~g~~~~~~~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~ 349 (652)
T 1pg4_A 270 KPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKH 349 (652)
T ss_dssp SCEEEEEESHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHHTTHHHHHTTCEEEEECSCTTSSSTTHHHHHHHHH
T ss_pred CCceEEECchHHHHHHHHHHHHhcCCCCCCEEEEccCCeeeechHHHHHHHHHcCceEEEECCCCCCCCHHHHHHHHHHh
Confidence 999999999998776643 3445788999999999999999998 4588999999999998753 4788999999999
Q ss_pred CceEEecchHHHHHHHccCC--CCCCCcCceeEEEeecCCCCchhhHHHHHhhC--CCCeeeecCCccccceecccCC-C
Q 010344 229 GVSVLGTVPSLVKAWKNTNC--LQGLDWTKIRSFASTGETSNVDDDLWLASKAY--YKPIIECCGGTELASSYIQGSM-L 303 (512)
Q Consensus 229 ~~t~l~~~P~~~~~l~~~~~--~~~~~l~~l~~i~~~G~~l~~~~~~~~~~~~~--~~~i~~~yG~tE~~~~~~~~~~-~ 303 (512)
++|+++++|++++.|++... ....++++||.+++|||++++++.+++.+.++ .+++++.||+||++..++.... .
T Consensus 350 ~vt~~~~~P~~~~~l~~~~~~~~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~~~~~~~~~~~~ 429 (652)
T 1pg4_A 350 QVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGGFMITPLPGA 429 (652)
T ss_dssp TCSEEEECHHHHHHHHTTGGGGTTTCCCTTCCEEEEESSCCCHHHHHHHHHHTTTTCSCEEEEBCCGGGSSCSBCCCTTT
T ss_pred CCeEEEeCHHHHHHHHhcCccccccCCcCceEEEEEecCCCCHHHHHHHHHHhCCCCCcEEccccCcccccceecCCCCC
Confidence 99999999999999987653 34567899999999999999999999998873 2789999999999876554432 2
Q ss_pred CCCcccccccccCCccEEEeCCCCCCCCCCCCccccccccccccccccccccc-Ccce-eEEecCCcccCceeeeecceE
Q 010344 304 QPQAFGAFSTATMTTGFVILDELGVPYPDDQPCVGEVGLFPLYLGATDRLLNA-DHEE-VYFSGMPIYKGMHLRRHGDII 381 (512)
Q Consensus 304 ~~~~~~~~G~p~~~~~~~i~d~~~~~~~~g~~~~Gel~v~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~TGD~~ 381 (512)
.....+++|.|++|++++|+|++|++++.|+ .|||+|+..+.+...+|.+. +.+. .+|. ..+|||+|||+|
T Consensus 430 ~~~~~~s~G~p~~g~~v~i~d~~g~~v~~g~--~GEl~i~g~~p~~~~gY~~~~e~~~~~~~~-----~~~g~y~TGDlg 502 (652)
T 1pg4_A 430 IELKAGSATRPFFGVQPALVDNEGHPQEGAT--EGNLVITDSWPGQARTLFGDHERFEQTYFS-----TFKNMYFSGDGA 502 (652)
T ss_dssp CCBCTTCCBSBCTTCCEEEECTTCCBCCSSE--EEEEEECSCCTTCCCEETTCHHHHHHHHHS-----SSTTSEEEEEEE
T ss_pred cCccCCccccCcCCCeEEEECCCCCCcCCCc--eEEEEEccCCCchhhhhcCCHHHHHhhhhh-----cCCCEEECCcEE
Confidence 3456789999999999999999999999998 79999943222222222222 2111 1221 235799999999
Q ss_pred EEeCCCeEEEEeccCceeeecceecchHHHHHhhhcCCcceeeeeEEeeCCCCCCCceEEEEEEecCCCCCCcHHHHHHH
Q 010344 382 KRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDGADESILETAAISVSPAGGGPEVLVICVVLKKGFTSQPVDKLKMI 461 (512)
Q Consensus 382 ~~~~~g~l~i~gR~~d~i~~~G~~v~~~~iE~~l~~~~~~v~~~~v~~~~~~~~~~~~~~a~v~~~~~~~~~~~~~l~~~ 461 (512)
++|+||+++|+||+||+||++|++|+|.|||++|. +||+|.+++|++.+++..+ +.++|+|+++++.. . .+++.+.
T Consensus 503 ~~d~dG~l~i~GR~dd~Ik~~G~rI~~~eIE~~l~-~~p~V~ea~Vvg~~~~~~g-~~l~a~Vv~~~~~~-~-~~~~~~~ 578 (652)
T 1pg4_A 503 RRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALV-AHPKIAEAAVVGIPHAIKG-QAIYAYVTLNHGEE-P-SPELYAE 578 (652)
T ss_dssp EECTTSCEEEEEESSSEEEETTEEEEHHHHHHHHH-HSTTEEEEEEEEEEETTTE-EEEEEEEEECTTCC-C-CHHHHHH
T ss_pred EEcCCCcEEEEecCCCEEEECCEEECHHHHHHHHH-hCCCcceEEEEEEEcCCCC-eEEEEEEEECCCCC-C-CHHHHHH
Confidence 99999999999999999999999999999999998 8999999999999988888 89999999987653 2 3456777
Q ss_pred HHHHHHhccCCccceeeEEEecCCCCCCCchHHHHHHHHHHHhhh
Q 010344 462 FSKAIQRNLNPLFKVSLVKIVLEFPRTASNKLLRRVLKDQLKHEL 506 (512)
Q Consensus 462 ~~~~~~~~l~~~~~p~~i~~~~~iP~t~~GKi~r~~l~~~~~~~~ 506 (512)
++++++++|++|++|+.|+++++||+|++||++|+.|++++.+++
T Consensus 579 l~~~l~~~l~~~~~P~~i~~v~~lP~T~sGKi~R~~L~~~~~~~~ 623 (652)
T 1pg4_A 579 VRNWVRKEIGPLATPDVLHWTDSLPKTRSGKIMRRILRKIAAGDT 623 (652)
T ss_dssp HHHHHHHHTCGGGCCSEEEECSCCCBCTTSCBCHHHHHHHHHTC-
T ss_pred HHHHHHHhCCCCcCCeEEEEcCCCCCCCCccchHHHHHHHHhCCC
Confidence 888888999999999999999999999999999999999998753
No 2
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Probab=100.00 E-value=4.4e-74 Score=589.53 Aligned_cols=466 Identities=20% Similarity=0.229 Sum_probs=385.5
Q ss_pred cHHHHHHHHhcc-CCCCCEEEEEcCCCHHHHHHHHHHHHhcceEeecCCCcCHHHHHHHHHhcCccEEEeccchhccCcc
Q 010344 2 SYRLVANALDTM-FSKGDAIAIDMPMTVHAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRK 80 (512)
Q Consensus 2 ~~~~~a~~L~~~-i~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~iv~~~~~~~~~~~ 80 (512)
.++++|++|++. +++||+|+++++|++++++++|||+++|++++|++|.++.+++.+++++++++++|+++...
T Consensus 58 ~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~la~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~----- 132 (536)
T 3ni2_A 58 TARRVASGLNKIGIQQGDVIMLFLPSSPEFVLAFLGASHRGAIITAANPFSTPAELAKHAKASRAKLLITQACYY----- 132 (536)
T ss_dssp HHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTEEEEEECGGGT-----
T ss_pred HHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHHhCCEEeccCCCCCHHHHHHHHHhcCCEEEEEChHHH-----
Confidence 478999999999 99999999999999999999999999999999999999999999999999999999997532
Q ss_pred ccchhhHHhcCCCceEEeeccCCcccccccccCccHHHHhhccCCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEe
Q 010344 81 FPLYSKVAEAGPLKAVVLPVIGDDVGIQLRQQDVSWKDFLSCVDYHPGPKYYPPVYRPVDSVINILFSSGTTGEPKAIPW 160 (512)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~ 160 (512)
+.+...........+.++.. ..+...+.++...... ..+.....++++++++|||||||.||+|++
T Consensus 133 -~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~-----~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~ 198 (536)
T 3ni2_A 133 -EKVKDFARESDVKVMCVDSA--------PDGCLHFSELTQADEN-----EAPQVDISPDDVVALPYSSGTTGLPKGVML 198 (536)
T ss_dssp -HHHHHHHHHHTCEEEESSCC--------CTTCEETHHHHTSCGG-----GCCCCCCCTTSEEECCEECTTSSSCEEEEE
T ss_pred -HHHHHHHhhcCceEEEecCC--------CCCccCHHHHhhcccc-----ccccCCCCccCEEEEEcCCCccccchHHHh
Confidence 23333332222333332211 1233456666543322 112234567899999999999999999999
Q ss_pred cCchhHHHHHHhhc----cccccCCcEEEecCCccchhhhHH-HHhhhccCceEEEecCCCchhhHHHHHHhcCceEEec
Q 010344 161 TQLSPIRCAAEAWG----HIDMKVGDVYCWPTNLGWVMGPII-LFSSFLSGAALALYHGSPLERSFGKFVQDSGVSVLGT 235 (512)
Q Consensus 161 s~~~~~~~~~~~~~----~~~~~~~~~~~~~~p~~~~~~~~~-~~~~l~~G~~~~~~~~~~~~~~~~~~l~~~~~t~l~~ 235 (512)
||+++.+.+..... .+++.++|++++.+|++|.+++.. ++.++..|+++++.+ ..++..+++.++++++|++.+
T Consensus 199 th~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~i~~~~~t~~~~ 277 (536)
T 3ni2_A 199 THKGLITSVAQQVDGDNPNLYFHSEDVILCVLPMFHIYALNSIMLCGLRVGAPILIMP-KFEIGSLLGLIEKYKVSIAPV 277 (536)
T ss_dssp EHHHHHHHHHHHHCSSSCSSCCCTTCCEEECSCTTSHHHHHHTHHHHHHHTCCEEECS-SCCHHHHHHHHHHHTCCEEEE
T ss_pred hHHHHHHHHHHHHhhccccccCCCCCEEEEecChHHHHHHHHHHHHHHhcCCEEEEcC-CCCHHHHHHHHHHhCCeEEEc
Confidence 99999888766543 356789999999999999999865 788999999999976 567899999999999999999
Q ss_pred chHHHHHHHccCCCCCCCcCceeEEEeecCCCCchhhHHHHHhhCCCCeeeecCCccccceecccC----CCCCCccccc
Q 010344 236 VPSLVKAWKNTNCLQGLDWTKIRSFASTGETSNVDDDLWLASKAYYKPIIECCGGTELASSYIQGS----MLQPQAFGAF 311 (512)
Q Consensus 236 ~P~~~~~l~~~~~~~~~~l~~l~~i~~~G~~l~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~----~~~~~~~~~~ 311 (512)
+|+++..|++.......+++++|.+++|||++++++.+.+++.++++++++.||+||++.+.+.+. .......+++
T Consensus 278 ~P~~~~~l~~~~~~~~~~l~~lr~i~~gGe~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~ 357 (536)
T 3ni2_A 278 VPPVMMSIAKSPDLDKHDLSSLRMIKSGGAPLGKELEDTVRAKFPQARLGQGYGMTEAGPVLAMCLAFAKEPFDIKPGAC 357 (536)
T ss_dssp CHHHHHHHHTCSCGGGSCCTTCCEEEEESSCCCHHHHHHHHHHCTTSEEEEEEECGGGSSEEEECGGGSSSCCCCCTTCC
T ss_pred cHHHHHHHHhCcccccCCCccceEEEECCCCCCHHHHHHHHHHCCCCCccccccccccchhhhcccccCCccccCCCCCe
Confidence 999999999887767788999999999999999999999999998899999999999987654432 2223456889
Q ss_pred ccccCCccEEEeC-CCCCCCCCCCCccccccc-ccccccccccccccCcceeEEecCCcccCceeeeecceEEEeCCCeE
Q 010344 312 STATMTTGFVILD-ELGVPYPDDQPCVGEVGL-FPLYLGATDRLLNADHEEVYFSGMPIYKGMHLRRHGDIIKRTVGGYI 389 (512)
Q Consensus 312 G~p~~~~~~~i~d-~~~~~~~~g~~~~Gel~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l 389 (512)
|.|+++++++|+| ++|++++.|+ .|||++ ++..+.+| +.+++.+...| ++++||+|||+|++|+||++
T Consensus 358 G~~~~~~~~~i~d~~~~~~~~~g~--~GEl~v~g~~v~~GY--~~~p~~t~~~~------~~~g~~~TGDl~~~~~dG~l 427 (536)
T 3ni2_A 358 GTVVRNAEMKIVDPETGASLPRNQ--PGEICIRGDQIMKGY--LNDPEATSRTI------DKEGWLHTGDIGYIDDDDEL 427 (536)
T ss_dssp CEECSSCEEEEECTTTCCBCCTTC--CEEEEEESTTSCSEE--TTCHHHHHHHB------CTTSCEEEEEEEEECTTSCE
T ss_pred eEeCCCcEEEEEeCCCCcCCCCCC--ccEEEEeCcccchhh--cCChhHHHhhc------cCCCceEcccEEEEcCCceE
Confidence 9999999999999 6799999999 699999 55555432 22333333333 45689999999999999999
Q ss_pred EEEeccCceeeecceecchHHHHHhhhcCCcceeeeeEEeeCCCCCCCceEEEEEEecCCCCCCcHHHHHHHHHHHHHhc
Q 010344 390 IVQGRADDTMNLGGIKTSSVEIERVCDGADESILETAAISVSPAGGGPEVLVICVVLKKGFTSQPVDKLKMIFSKAIQRN 469 (512)
Q Consensus 390 ~i~gR~~d~i~~~G~~v~~~~iE~~l~~~~~~v~~~~v~~~~~~~~~~~~~~a~v~~~~~~~~~~~~~l~~~~~~~~~~~ 469 (512)
+++||+||+||++|++|+|.+||++|. +||+|.+++|++.+++..+ +.++++|+..++.. .+.+++.++ ++++
T Consensus 428 ~~~GR~dd~ik~~G~~v~p~eIE~~l~-~~p~V~~a~Vv~~~~~~~g-~~~~a~vv~~~~~~-~~~~~l~~~----l~~~ 500 (536)
T 3ni2_A 428 FIVDRLKELIKYKGFQVAPAELEALLI-AHPEISDAAVVGLKDEDAG-EVPVAFVVKSEKSQ-ATEDEIKQY----ISKQ 500 (536)
T ss_dssp EEEEECSCCEEETTEEECHHHHHHHHH-TSTTEEEEEEEEEEETTTE-EEEEEEEEECTTCC-CCHHHHHHH----HHTT
T ss_pred EEEecccceEEECCEEECHHHHHHHHH-hCCCcceEEEEeeecCCCC-ceeEEEEEecCCCC-CCHHHHHHH----HHHh
Confidence 999999999999999999999999998 9999999999999998888 89999999987655 666555554 5578
Q ss_pred cCCccceeeEEEecCCCCCCCchHHHHHHHHHHHh
Q 010344 470 LNPLFKVSLVKIVLEFPRTASNKLLRRVLKDQLKH 504 (512)
Q Consensus 470 l~~~~~p~~i~~~~~iP~t~~GKi~r~~l~~~~~~ 504 (512)
|+.|++|+.|+++++||+|++||++|++|++++++
T Consensus 501 l~~~~~p~~i~~v~~lP~t~~GKi~R~~L~~~~~~ 535 (536)
T 3ni2_A 501 VIFYKRIKRVFFIEAIPKAPSGKILRKNLKEKLAG 535 (536)
T ss_dssp SCGGGCCSEEEECSCCCBCTTSCBCHHHHHTC---
T ss_pred ccCCccccEEEEEecCCCCCCCCeeHHHHHHHhcc
Confidence 99999999999999999999999999999988753
No 3
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*
Probab=100.00 E-value=2.5e-73 Score=578.98 Aligned_cols=462 Identities=20% Similarity=0.205 Sum_probs=382.1
Q ss_pred cHHHHHHHHhcc-CCCCCEEEEEcCCCHHHHHHHHHHHHhcceEeecCCCcCHHHHHHHHHhcCccEEEeccchhccCcc
Q 010344 2 SYRLVANALDTM-FSKGDAIAIDMPMTVHAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRK 80 (512)
Q Consensus 2 ~~~~~a~~L~~~-i~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~iv~~~~~~~~~~~ 80 (512)
.++++|++|++. +++||+|+++++|++++++++|||+++|++++|++|.++.+++.+++++++++++|+++...
T Consensus 37 ~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~----- 111 (503)
T 4fuq_A 37 RAGRVANVLVARGLQVGDRVAAQTEKSVEALVLYLATVRAGGVYLPLNTAYTLHELDYFITDAEPKIVVCDPSKR----- 111 (503)
T ss_dssp HHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGT-----
T ss_pred HHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCCcEEEECchhh-----
Confidence 378999999999 99999999999999999999999999999999999999999999999999999999998532
Q ss_pred ccchhhHHhcCCCceEEeeccCCcccccccccCccHHHHhhccCCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEe
Q 010344 81 FPLYSKVAEAGPLKAVVLPVIGDDVGIQLRQQDVSWKDFLSCVDYHPGPKYYPPVYRPVDSVINILFSSGTTGEPKAIPW 160 (512)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~ 160 (512)
+.+..+..........+... ....+.+...... .........++++++++|||||||.||+|++
T Consensus 112 -~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~-----~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~ 175 (503)
T 4fuq_A 112 -DGIAAIAAKVGATVETLGPD----------GRGSLTDAAAGAS-----EAFATIDRGADDLAAILYTSGTTGRSKGAML 175 (503)
T ss_dssp -TTTHHHHHHHTCEEEECCTT----------SCSHHHHHHHTSC-----SCCCCCCCCTTSEEEEEECC--CCSCCEEEE
T ss_pred -HHHHHHHhhcCceEEEecCC----------cccccchhhhcCC-----CCcCcCCCCCCCeEEEEECCCcccCCeEEEE
Confidence 23333333322222222111 1111222221111 1122334567899999999999999999999
Q ss_pred cCchhHHHHHHhhccccccCCcEEEecCCccchhhhHH-HHhhhccCceEEEecCCCchhhHHHHHHhcCceEEecchHH
Q 010344 161 TQLSPIRCAAEAWGHIDMKVGDVYCWPTNLGWVMGPII-LFSSFLSGAALALYHGSPLERSFGKFVQDSGVSVLGTVPSL 239 (512)
Q Consensus 161 s~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~-~~~~l~~G~~~~~~~~~~~~~~~~~~l~~~~~t~l~~~P~~ 239 (512)
+|+++.+++......+++.++|++++.+|++|.+++.. .+.+++.|+++++.+ ..+++.+++.++ ++|+++++|++
T Consensus 176 sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~-~~~~~~~~~~i~--~~t~~~~~P~~ 252 (503)
T 4fuq_A 176 SHDNLASNSLTLVDYWRFTPDDVLIHALPIYHTHGLFVASNVTLFARGSMIFLP-KFDPDKILDLMA--RATVLMGVPTF 252 (503)
T ss_dssp EHHHHHHHHHHHHHHTTCCTTCEEEECSCSSSHCCCCCCHHHHHHTTCEEEECS-SCCHHHHHHHHT--TCCEEEECHHH
T ss_pred eHHHHHHHHHHHHHHhCCCCCCEEEEeCChHHHHHHHHHHHHHHHhCCEEEEcC-CCCHHHHHHHHh--hcCEEEEHHHH
Confidence 99999999888888889999999999999999999765 778899999999976 567889999998 89999999999
Q ss_pred HHHHHccCCCCCCCcCceeEEEeecCCCCchhhHHHHHhhCCCCeeeecCCccccceecccCCCCCCcccccccccCCcc
Q 010344 240 VKAWKNTNCLQGLDWTKIRSFASTGETSNVDDDLWLASKAYYKPIIECCGGTELASSYIQGSMLQPQAFGAFSTATMTTG 319 (512)
Q Consensus 240 ~~~l~~~~~~~~~~l~~l~~i~~~G~~l~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~G~p~~~~~ 319 (512)
+..|++.......+++++|.+++||+++++++.+.+.+.+ +.++++.||+||++.... .........+++|+|+++++
T Consensus 253 ~~~l~~~~~~~~~~~~~lr~~~~gg~~l~~~~~~~~~~~~-~~~~~~~YG~TE~~~~~~-~~~~~~~~~~~~G~p~~~~~ 330 (503)
T 4fuq_A 253 YTRLLQSPRLTKETTGHMRLFISGSAPLLADTHREWSAKT-GHAVLERYGMTETNMNTS-NPYDGDRVPGAVGPALPGVS 330 (503)
T ss_dssp HHHHHTCTTCSTTTTTTCCEEEECSSCCCHHHHHHHHHHH-SCCEEECCEETTTEECBC-CCSSSCCCTTEEEEBCTTCE
T ss_pred HHHHHhCCCccccchhhcEEEEECCCCCCHHHHHHHHHHh-CCCccceEcccccCcccc-cCCCCCCcCCccccCCCCeE
Confidence 9999988776777789999999999999999999999887 688999999999987643 33334455688999999999
Q ss_pred EEEeC-CCCCCCCCCCCccccccc-ccccccccccccccCcceeEEecCCcccCceeeeecceEEEeCCCeEEEEeccCc
Q 010344 320 FVILD-ELGVPYPDDQPCVGEVGL-FPLYLGATDRLLNADHEEVYFSGMPIYKGMHLRRHGDIIKRTVGGYIIVQGRADD 397 (512)
Q Consensus 320 ~~i~d-~~~~~~~~g~~~~Gel~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~i~gR~~d 397 (512)
++|+| ++|++++.|+ .|||+| ++..+.+| +.+++.+...| ..++||+|||+|++++||+++++||.||
T Consensus 331 ~~i~d~~~g~~~~~g~--~GEl~v~g~~v~~GY--~~~~~~t~~~f------~~~g~~~TGDl~~~~~dG~l~~~GR~dd 400 (503)
T 4fuq_A 331 ARVTDPETGKELPRGD--IGMIEVKGPNVFKGY--WRMPEKTKSEF------RDDGFFITGDLGKIDERGYVHILGRGKD 400 (503)
T ss_dssp EEEECTTTCCBCCTTC--CEEEEEESTTSCCCB--TTCHHHHHHTB------CTTSCEEEEEEEEECTTCEEEECCSSTT
T ss_pred EEEEECCCCCCCcCCC--ceEEEEECCchhhhh--cCChhhhHhhh------CCCCCeEcceeEEEcCCCcEEEEecCCC
Confidence 99999 8899999999 699999 56555432 22334444334 3457999999999999999999999999
Q ss_pred eeeecceecchHHHHHhhhcCCcceeeeeEEeeCCCCCCCceEEEEEEecCCCCCCcHHHHHHHHHHHHHhccCCcccee
Q 010344 398 TMNLGGIKTSSVEIERVCDGADESILETAAISVSPAGGGPEVLVICVVLKKGFTSQPVDKLKMIFSKAIQRNLNPLFKVS 477 (512)
Q Consensus 398 ~i~~~G~~v~~~~iE~~l~~~~~~v~~~~v~~~~~~~~~~~~~~a~v~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~p~ 477 (512)
+||++|++|+|.|||++|. +||+|.+++|++.+++..+ +.++++|+.+++.. .+.+++. ++++++|+.|++|+
T Consensus 401 ~ik~~G~~v~p~eIE~~l~-~~p~V~~a~vv~~~~~~~~-~~~~a~v~~~~~~~-~~~~~l~----~~l~~~L~~~~~P~ 473 (503)
T 4fuq_A 401 LVITGGFNVYPKEIESEID-AMPGVVESAVIGVPHADFG-EGVTAVVVRDKGAT-IDEAQVL----HGLDGQLAKFKMPK 473 (503)
T ss_dssp CEEETTEEECHHHHHHHHH-TSTTEEEEEEEEEEETTTE-EEEEEEEEECTTCC-CCHHHHH----HHHBTTBCGGGCCS
T ss_pred EEEECCEEECHHHHHHHHH-hCCCeeEEEEEEeEchhcC-ceeEEEEEeCCCCC-CCHHHHH----HHHHhhcccCCCCC
Confidence 9999999999999999998 8999999999999998888 89999999987765 6665554 45568899999999
Q ss_pred eEEEecCCCCCCCchHHHHHHHHHHHhhh
Q 010344 478 LVKIVLEFPRTASNKLLRRVLKDQLKHEL 506 (512)
Q Consensus 478 ~i~~~~~iP~t~~GKi~r~~l~~~~~~~~ 506 (512)
.|+++++||+|++||++|++|++++++..
T Consensus 474 ~i~~v~~lP~t~~GKi~R~~L~~~~~~~~ 502 (503)
T 4fuq_A 474 KVIFVDDLPRNTMGKVQKNVLRETYKDIY 502 (503)
T ss_dssp EEEEESCCCBCTTSCBCHHHHHHHTTTTT
T ss_pred EEEEECCCCCCcccceeHHHHHHHHHHhh
Confidence 99999999999999999999999997654
No 4
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}
Probab=100.00 E-value=5.8e-73 Score=584.66 Aligned_cols=473 Identities=19% Similarity=0.192 Sum_probs=368.2
Q ss_pred cHHHHHHHHhcc-CCCCCEEEEEcCCCHHHHHHHHHHHHhcceEeecCCCcCHHHHHHHHHhcCccEEEeccchhccCcc
Q 010344 2 SYRLVANALDTM-FSKGDAIAIDMPMTVHAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRK 80 (512)
Q Consensus 2 ~~~~~a~~L~~~-i~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~iv~~~~~~~~~~~ 80 (512)
.++++|++|++. +++||+|+++++|++++++++|||+++|++++|+++.++.+++.+++++++++++|++.... .
T Consensus 95 ~~~~~A~~L~~~Gv~~Gd~V~l~~~~~~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~----~ 170 (580)
T 3etc_A 95 YSDKAANFFVKHGIGKGDYVMLTLKSRYDFWYCMLGLHKLGAIAVPATHMLKTRDIVYRIEKAGLKMIVCIAEDD----V 170 (580)
T ss_dssp HHHHHHHHHHHTTCCTTCEEEEECTTCTHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCCEEEEESSTT----H
T ss_pred HHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHhCCEEEEeCCccCCHHHHHHHHHhcCCCEEEEecchh----H
Confidence 378999999999 99999999999999999999999999999999999999999999999999999999987421 0
Q ss_pred ccchhhHHhcCCC---ceEEeeccCCcccccccccCccHHHHhhccCCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCce
Q 010344 81 FPLYSKVAEAGPL---KAVVLPVIGDDVGIQLRQQDVSWKDFLSCVDYHPGPKYYPPVYRPVDSVINILFSSGTTGEPKA 157 (512)
Q Consensus 81 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~ 157 (512)
...+..+....+. ..+.+. .. ...+..++.+.+........ .........++++++++|||||||.||+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~--~~-----~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~d~a~i~~TSGTTG~PKg 242 (580)
T 3etc_A 171 PEQVDEAHAECGDIPLKKAKVG--GD-----VLEGWIDFRKELEESSPIFE-RPTGEVSTKNEDICLVYFSSGTAGFPKM 242 (580)
T ss_dssp HHHHHHHHHHHCSCCCEEEEES--SS-----CCTTCEEHHHHHHHSCSCCC-CCCGGGSCCTTSEEEEEEECCSSSSCEE
T ss_pred HHHHHHHhhhCCCcceEEEEeC--Cc-----cccccccHHHHHhhCCcccc-cCccccCCCCCCcEEEEEeCCCCCCccE
Confidence 1223333333222 222221 11 11234556666654432100 0001123567899999999999999999
Q ss_pred EEecCchhHHHHHHhhccccccCCcEEEecCCccchhhhHH-HHhhhccCceEEEec-CCCchhhHHHHHHhcCceEEec
Q 010344 158 IPWTQLSPIRCAAEAWGHIDMKVGDVYCWPTNLGWVMGPII-LFSSFLSGAALALYH-GSPLERSFGKFVQDSGVSVLGT 235 (512)
Q Consensus 158 v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~-~~~~l~~G~~~~~~~-~~~~~~~~~~~l~~~~~t~l~~ 235 (512)
|+++|.++...+.......++.+++++++..|++|..+.+. ++.++..|+++++.+ ..+++..+++.|+++++|++++
T Consensus 243 V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~ 322 (580)
T 3etc_A 243 VEHDNTYPLGHILTAKYWQNVEDDGLHYTVADSGWGKCVWGKLYGQWIAGCAVFVYDYDRFEAKNMLEKASKYGVTTFCA 322 (580)
T ss_dssp EEEETTHHHHHHHHHHTTSCCCTTCEEEECCCTTSTHHHHHTTHHHHHTTCEEEEEECSSCCHHHHHHHHHHHTCCEEEE
T ss_pred EEeccHHHHHHHHHHHHhhCCCCCceEEEeCChHHHHHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHHHHHCCeEEEc
Confidence 99999998888777666778899999999999999988875 788999999998875 4567899999999999999999
Q ss_pred chHHHHHHHccCCCCCCCcCceeEEEeecCCCCchhhHHHHHhhCCCCeeeecCCccccceecccCCCCCCccccccccc
Q 010344 236 VPSLVKAWKNTNCLQGLDWTKIRSFASTGETSNVDDDLWLASKAYYKPIIECCGGTELASSYIQGSMLQPQAFGAFSTAT 315 (512)
Q Consensus 236 ~P~~~~~l~~~~~~~~~~l~~l~~i~~~G~~l~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~G~p~ 315 (512)
+|++++.|++. .....++++||.+++|||++++++.+++.+.+ ++++++.||+||++..++..+ ......+++|+|+
T Consensus 323 ~P~~~~~l~~~-~~~~~~l~~lr~i~~gGe~l~~~~~~~~~~~~-g~~i~~~YG~TE~~~~~~~~~-~~~~~~~~~G~p~ 399 (580)
T 3etc_A 323 PPTIYRFLIKE-DLSHYNFSTLKYAVVAGEPLNPEVFNRFLEFT-GIKLMEGFGQTETVVTIATFP-WMEPKPGSIGKPT 399 (580)
T ss_dssp CHHHHHHHHTS-CC---CCTTCCEEEECSSCCCHHHHHHHHHHH-SCCCEEEECCTTSSCCEECCT-TSCCCTTCCBEEC
T ss_pred cHHHHHHHHhc-ccccCCCccceEEEEccCCCCHHHHHHHHHHh-CCeEecccccccccceeecCC-CCCCCCCccccCC
Confidence 99999999876 34566789999999999999999999999887 789999999999987554433 2345678999999
Q ss_pred CCccEEEeCCCCCCCCCCCCcccccccc------cccccccccccccCcceeEEecCCcccCceeeeecceEEEeCCCeE
Q 010344 316 MTTGFVILDELGVPYPDDQPCVGEVGLF------PLYLGATDRLLNADHEEVYFSGMPIYKGMHLRRHGDIIKRTVGGYI 389 (512)
Q Consensus 316 ~~~~~~i~d~~~~~~~~g~~~~Gel~v~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l 389 (512)
++++++|+|++|++++.|+ .|||+++ ++.+.+ |+.+++.+...|. +|||+|||+|++|+||++
T Consensus 400 ~~~~v~ivd~~g~~~~~g~--~GEl~v~~~~g~~~~~~~g--Y~~~p~~t~~~f~-------~gwy~TGDlg~~d~dG~l 468 (580)
T 3etc_A 400 PGYKIELMDRDGRLCEVGE--EGEIVINTMEGKPVGLFVH--YGKDPERTEETWH-------DGYYHTGDMAWMDEDGYL 468 (580)
T ss_dssp TTCEEEEECTTSCBCCTTC--CEEEEEECTTCCCTTCCCE--ETTCHHHHHHHEE-------TTEEEEEEEEEECTTSCE
T ss_pred CCCEEEEECCCCCCCCCCC--ceEEEEecCCCCCCeeecc--ccCCHhHHHhhcC-------CCEEecCcEEEECCCCcE
Confidence 9999999999999999999 6999994 223322 2233444444442 479999999999999999
Q ss_pred EEEeccCceeeecceecchHHHHHhhhcCCcceeeeeEEeeCCCCCCCceEEEEEEecCCCCCCcHHHHHHHHHHHHHhc
Q 010344 390 IVQGRADDTMNLGGIKTSSVEIERVCDGADESILETAAISVSPAGGGPEVLVICVVLKKGFTSQPVDKLKMIFSKAIQRN 469 (512)
Q Consensus 390 ~i~gR~~d~i~~~G~~v~~~~iE~~l~~~~~~v~~~~v~~~~~~~~~~~~~~a~v~~~~~~~~~~~~~l~~~~~~~~~~~ 469 (512)
+|+||.||+||++|++|+|.|||++|. +||+|.+++|++.+++..+ +.+.|+|+++++.. ..+++.+.++++++++
T Consensus 469 ~~~GR~dd~Ik~~G~~I~p~eIE~~l~-~~p~V~~a~Vvg~~~~~~g-~~~~a~vv~~~~~~--~~~~~~~~l~~~l~~~ 544 (580)
T 3etc_A 469 WFVGRADDIIKTSGYKVGPFEVESALI-QHPAVLECAITGVPDPVRG-QVIKATIVLTKDYT--PSDSLKNELQDHVKNV 544 (580)
T ss_dssp EEEEESSSCEEETTEEECHHHHHHHHT-TSTTEEEEEEEEEEETTTE-EEEEEEEEECTTCC--CCHHHHHHHHHHHHHH
T ss_pred EEEecCCCEEEECCEEECHHHHHHHHH-hCCCeeeEEEEeeeccCCC-cEEEEEEEECCCCC--CCHHHHHHHHHHHHhh
Confidence 999999999999999999999999998 8999999999999999888 89999999988753 3456677888888899
Q ss_pred cCCccceeeEEEecCCCCCCCchHHHHHHHHHHHh
Q 010344 470 LNPLFKVSLVKIVLEFPRTASNKLLRRVLKDQLKH 504 (512)
Q Consensus 470 l~~~~~p~~i~~~~~iP~t~~GKi~r~~l~~~~~~ 504 (512)
|++|++|+.|+++++||+|++|||+|++|++++.+
T Consensus 545 l~~~~~P~~i~~v~~lP~t~sGKi~R~~Lr~~~~~ 579 (580)
T 3etc_A 545 TAPYKYPRIIEFVPELPKTISGKIRRVEIRDKDQS 579 (580)
T ss_dssp SCGGGCCSEEEEECC--------------------
T ss_pred CCCccCCeEEEEeCCCCCCCCcCCcHHHHHhHhhc
Confidence 99999999999999999999999999999998865
No 5
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Probab=100.00 E-value=2.8e-73 Score=585.25 Aligned_cols=473 Identities=18% Similarity=0.177 Sum_probs=350.2
Q ss_pred cHHHHHHHHhcc-CCCCCEEEEEcCCCHHHHHHHHHHHHhcceEeecCCCcCHHHHHHHHHhcCccEEEeccchhccCcc
Q 010344 2 SYRLVANALDTM-FSKGDAIAIDMPMTVHAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRK 80 (512)
Q Consensus 2 ~~~~~a~~L~~~-i~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~iv~~~~~~~~~~~ 80 (512)
.++++|++|++. +++||+|+++++|++++++++|||+++|++++|++|.++.+++.+++++++++++|+++...
T Consensus 61 ~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~~i~~~~~~----- 135 (549)
T 3g7s_A 61 VTKKLASGISRKGVRKGEHVGVCIPNSIDYVMTIYALWRVAATPVPINPMYKSFELEHILNDSEATTLVVHSMLY----- 135 (549)
T ss_dssp HHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHTTCSEEEEEGGGH-----
T ss_pred HHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhCCEEEccCCCCCHHHHHHHHHhcCCCEEEEChHHH-----
Confidence 478999999999 99999999999999999999999999999999999999999999999999999999998532
Q ss_pred ccchhhHHhcCCCceEEeeccCCcccccccccCccHHHHhhccCCCCCCCCCCCCCC-CCCCeEEEEecCCCCCCCceEE
Q 010344 81 FPLYSKVAEAGPLKAVVLPVIGDDVGIQLRQQDVSWKDFLSCVDYHPGPKYYPPVYR-PVDSVINILFSSGTTGEPKAIP 159 (512)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~TSGtTG~pK~v~ 159 (512)
+.+...........+++.. .....+.++....... ...... .++++++|+|||||||.||||+
T Consensus 136 -~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~-----~~~~~~~~~~d~a~i~~TSGTTG~PKgV~ 199 (549)
T 3g7s_A 136 -ENFKPVLEKTGVERVFVVG----------GEVNSLSEVMDSGSED-----FENVKVNPEEDVALIPYTGGTTGMPKGVM 199 (549)
T ss_dssp -HHHHHHHTTSCCCEEEEET----------CSSSCHHHHHHHSCSC-----CCCCCCCTTTSEEECCEECCCCC-CEEEE
T ss_pred -HHHHHHHhhCCCcEEEEeC----------CCCcCHHHHHhcCccc-----cccccCCCCCCEEEEEECCCccCCCceEE
Confidence 3333444433333222221 1334577766554331 111222 3488999999999999999999
Q ss_pred ecCchhHHHHHHhhccccccCCcEEEecCCccchhhhHHHHhhhccCceEEEecCCCchhhHHHHHHhcCceEEecchHH
Q 010344 160 WTQLSPIRCAAEAWGHIDMKVGDVYCWPTNLGWVMGPIILFSSFLSGAALALYHGSPLERSFGKFVQDSGVSVLGTVPSL 239 (512)
Q Consensus 160 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~l~~~~~t~l~~~P~~ 239 (512)
++|+++.+.+......+++.++|++++.+|++|..++..++.++..|+++++.+ ..++..+++.++++++|+++++|++
T Consensus 200 ~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~~~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~P~~ 278 (549)
T 3g7s_A 200 LTHFNLAANALQLAVATGLSHMDTIVGCMPMFHSAEFGLVNLMVTVGNEYVVMG-MFNQEMLAENIEKYKGTFSWAVPPA 278 (549)
T ss_dssp EEHHHHHHHHHHHHHHHCCCTTCEEECCSCTTSHHHHHHHTTHHHHCCEEEEES-SCCHHHHHHHHHHTTCCEEEECHHH
T ss_pred EcHHHHHHHHHHHHHHcCCCCCCEEEEeCcHHHHHHHHHHHHHHhcCceEEEcC-CCCHHHHHHHHHHhCCeEEEeCCHH
Confidence 999999999888888889999999999999999999887888999999999976 6778999999999999999999999
Q ss_pred HHHHHccCCCCC--CCcCceeEEEeecCCCCchhhHHHHHh----hC--CCCeeeecCCccccceecccCCCCCCccccc
Q 010344 240 VKAWKNTNCLQG--LDWTKIRSFASTGETSNVDDDLWLASK----AY--YKPIIECCGGTELASSYIQGSMLQPQAFGAF 311 (512)
Q Consensus 240 ~~~l~~~~~~~~--~~l~~l~~i~~~G~~l~~~~~~~~~~~----~~--~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~ 311 (512)
+..|++...... .+++++|.+++||+++++++.+.+.+. +. ..++++.||+||++.+++..........+++
T Consensus 279 ~~~l~~~~~~~~~~~~~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~ 358 (549)
T 3g7s_A 279 LNVLVNTLESSNKTYDWSYLKVFATGAWPVAPALVEKLLKLAAEKCNNPRLRHNQIWGMTEACPMVTTNPPLRLDKSTTQ 358 (549)
T ss_dssp HHHHHHHHHHSCCCCCCTTCCEEEEESSCCCHHHHHHHHHHHHHHSSCTTCEEEEEEECGGGSSEEEECCGGGGGGTTSC
T ss_pred HHHHHhhhhhhcccCCccceeEEEeCCccCCHHHHHHHHHHHHhhcCCccccccceEeccccchhhhcCCccccCcCCCc
Confidence 999987643333 678999999999999999999998877 42 2789999999999987766554444567899
Q ss_pred ccccCCccEEEeC-CCCCCCCCCCCccccccc-ccccccccccccccCcceeEEecCCcccCceeeeecceEEEeCCCeE
Q 010344 312 STATMTTGFVILD-ELGVPYPDDQPCVGEVGL-FPLYLGATDRLLNADHEEVYFSGMPIYKGMHLRRHGDIIKRTVGGYI 389 (512)
Q Consensus 312 G~p~~~~~~~i~d-~~~~~~~~g~~~~Gel~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l 389 (512)
|.|+++++++|+| ++|++++.|+ .|||+| ++..+.+| +.+++.+...|..+ .++.+||+|||+|++|+||++
T Consensus 359 G~p~~~~~~~i~d~~~g~~~~~g~--~GEl~v~g~~v~~GY--~~~~~~t~~~f~~~--~~g~~~~~TGDl~~~~~dG~l 432 (549)
T 3g7s_A 359 GVPMSDIELKVISLEDGRELGVGE--SGEIVIRGPNIFKGY--WKREKENQECWWYD--EKGRKFFRTGDVGFIDEEGFL 432 (549)
T ss_dssp CEECTTCEEEEECSSSCCEECTTC--CEEEEEESTTSCSEE--TTCTTGGGTSEEEC--TTCCEEEEEEEEEEECTTSCE
T ss_pred cccCCCCEEEEEeCCCCcCCCCCC--ceEEEEECcchhhhh--CCChhhhhhhhhcc--CCCCceEccCcEEEEcCCceE
Confidence 9999999999999 8899999999 699999 56555432 33455554444211 145569999999999999999
Q ss_pred EEEeccCceeeecceecchHHHHHhhhcCCcceeeeeEEeeCCCCCCCceEEEEEEecCCCC-CCcHHHHHHHHHHHHHh
Q 010344 390 IVQGRADDTMNLGGIKTSSVEIERVCDGADESILETAAISVSPAGGGPEVLVICVVLKKGFT-SQPVDKLKMIFSKAIQR 468 (512)
Q Consensus 390 ~i~gR~~d~i~~~G~~v~~~~iE~~l~~~~~~v~~~~v~~~~~~~~~~~~~~a~v~~~~~~~-~~~~~~l~~~~~~~~~~ 468 (512)
+++||.||+||++|++|+|.|||++|. +||+|.+++|++.+++..+ +.++++|+++++.. ..+.+++.+ ++++
T Consensus 433 ~~~GR~dd~ik~~G~~v~p~eIE~~l~-~~p~V~~a~Vv~~~~~~~g-~~~~a~vv~~~~~~~~~~~~~l~~----~l~~ 506 (549)
T 3g7s_A 433 HFQDRVKEVIKYKGYTIAPFELEALLM-KHEAVMDVAVIGKPDEEAG-EVPKAFIVLKPEYRGKVDEEDIIE----WVRE 506 (549)
T ss_dssp EEEEEC------------CHHHHHHHT-TSTTEEEEEEECCCC-------CEEEEEECSTTTTSCCHHHHHH----HHHT
T ss_pred EEeccccceEEECCEEECHHHHHHHHH-hCCCeeeEEEEeeEccccC-ceEEEEEEECCCccCcCCHHHHHH----HHHH
Confidence 999999999999999999999999998 9999999999999998888 89999999987621 155555554 5558
Q ss_pred ccCCccceeeEEEecCCCCCCCchHHHHHHHHHHHhhhhc
Q 010344 469 NLNPLFKVSLVKIVLEFPRTASNKLLRRVLKDQLKHELSV 508 (512)
Q Consensus 469 ~l~~~~~p~~i~~~~~iP~t~~GKi~r~~l~~~~~~~~~~ 508 (512)
+|+.|++|+.|+++++||+|++||++|++|++++.+.-..
T Consensus 507 ~L~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~~~~~~~~ 546 (549)
T 3g7s_A 507 RISGYKRVREVEFVEELPRTASGKLLRRLLREKEAEGHHH 546 (549)
T ss_dssp TCC-----CCCCEEEECC----------------------
T ss_pred hccCcccceEEEEeccCCCCCCcCEeHHHHHHHhhccccc
Confidence 8999999999999999999999999999999998865443
No 6
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Probab=100.00 E-value=1.1e-72 Score=580.10 Aligned_cols=477 Identities=18% Similarity=0.152 Sum_probs=385.1
Q ss_pred cHHHHHHHHhcc-CCCCCEEEEEcCCCHHHHHHHHHHHHhcceEeecCCCcCHHHHHHHHHhcCccEEEeccchhccCcc
Q 010344 2 SYRLVANALDTM-FSKGDAIAIDMPMTVHAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRK 80 (512)
Q Consensus 2 ~~~~~a~~L~~~-i~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~iv~~~~~~~~~~~ 80 (512)
.++++|++|++. +++||+|+++++|++++++++|||+++|++++|++|.++.+++.+++++++++++|+++...
T Consensus 61 ~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~la~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~----- 135 (548)
T 2d1s_A 61 KSCCLGKALQNYGLVVDGRIALCSENCEEFFIPVIAGLFIGVGVAPTNEIYTLRELVHSLGISKPTIVFSSKKGL----- 135 (548)
T ss_dssp HHHHHHHHHHHHTCCTTCEEEEECSSCTTTHHHHHHHHHHTCEEEEECTTSCHHHHHHHHHHHCCSEEEECTTTH-----
T ss_pred HHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHHHHhhCCEEeccCCCCCHHHHHHHHHhcCCeEEEEcHHHH-----
Confidence 378999999999 99999999999999999999999999999999999999999999999999999999997432
Q ss_pred ccchhhHHhcCCCceEEeeccCCcccccccccCccHHHHhhccCCCCCCC-CCCCCCC-CCCCeEEEEecCCCCCCCceE
Q 010344 81 FPLYSKVAEAGPLKAVVLPVIGDDVGIQLRQQDVSWKDFLSCVDYHPGPK-YYPPVYR-PVDSVINILFSSGTTGEPKAI 158 (512)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~i~~TSGtTG~pK~v 158 (512)
+.+..+....+....++...... ...+...|.++........... ....... .++++++++|||||||.||+|
T Consensus 136 -~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv 210 (548)
T 2d1s_A 136 -DKVITVQKTVTTIKTIVILDSKV----DYRGYQCLDTFIKRNTPPGFQASSFKTVEVDRKEQVALIMNSSGSTGLPKGV 210 (548)
T ss_dssp -HHHHHHHHHSTTCCEEEETTCSS----CBTTBCBHHHHHHHTSCTTCCGGGCCCCCCCTTTCEEEEECCSSCSSSCCCE
T ss_pred -HHHHHHhcCCCCCCEEEEeCCcc----cccccccHHHHHhcCccccCCcccccccccCCCCCEEEEEeCCCCCCCCCEE
Confidence 23333333332111122111110 0012335777665432200000 0000011 238899999999999999999
Q ss_pred EecCchhHHHHHHhhcc---ccccCCcEEEecCCccchhhhHH-HHhhhccCceEEEecCCCchhhHHHHHHhcCceEEe
Q 010344 159 PWTQLSPIRCAAEAWGH---IDMKVGDVYCWPTNLGWVMGPII-LFSSFLSGAALALYHGSPLERSFGKFVQDSGVSVLG 234 (512)
Q Consensus 159 ~~s~~~~~~~~~~~~~~---~~~~~~~~~~~~~p~~~~~~~~~-~~~~l~~G~~~~~~~~~~~~~~~~~~l~~~~~t~l~ 234 (512)
++||+++.+.+...... +++.++|++++..|++|.+++.. ++.++ .|+++++.+ ..+++.+++.|+++++|+++
T Consensus 211 ~~sh~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l-~G~~~v~~~-~~~~~~~~~~i~~~~~t~~~ 288 (548)
T 2d1s_A 211 QLTHENIVTRFSHARDPIYGNQVSPGTAVLTVVPFHHGFGMFTTLGYLI-CGFRVVMLT-KFDEETFLKTLQDYKCTSVI 288 (548)
T ss_dssp EEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTSHHHHHHHHHHHH-TTCEEEECC-CCCHHHHHHHHHHTTEEEEE
T ss_pred EecHHHHHHHHHHhhchhhccCCCccceEEEeccHHHHHHHHHHHHHHh-cCcEEEEcC-CCCHHHHHHHHHHcCCcEEE
Confidence 99999999888777665 67889999999999999999876 66677 999999976 56789999999999999999
Q ss_pred cchHHHHHHHccCCCCCCCcCceeEEEeecCCCCchhhHHHHHhhCCCCeeeecCCccccceecccCCCCCCcccccccc
Q 010344 235 TVPSLVKAWKNTNCLQGLDWTKIRSFASTGETSNVDDDLWLASKAYYKPIIECCGGTELASSYIQGSMLQPQAFGAFSTA 314 (512)
Q Consensus 235 ~~P~~~~~l~~~~~~~~~~l~~l~~i~~~G~~l~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~G~p 314 (512)
++|+++..|++.......+++++|.+++||+++++++.+.+.+.+++.++++.||+||++...+.... .....+++|+|
T Consensus 289 ~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~-~~~~~~~~G~~ 367 (548)
T 2d1s_A 289 LVPTLFAILNKSELLNKYDLSNLVEIASGGAPLSKEVGEAVARRFNLPGVRQGYGLTETTSAIIITPE-GDDKPGASGKV 367 (548)
T ss_dssp ECHHHHHHHHHCSCGGGSCCTTCCEEEECSSCCCHHHHHHHHHHTTCSCCEEEEECGGGSSEEEECCT-TCCCTTCCBEE
T ss_pred ecHHHHHHHHhCcccccccccceeEEEEcCccCCHHHHHHHHHHcCCCceeeccccccccceeeecCc-ccCCCCCCCcc
Confidence 99999999988765556788999999999999999999999999878889999999999876655332 33456899999
Q ss_pred cCCccEEEeC-CCCCCCCCCCCccccccc-ccccccccccccccCcceeEEecCCcccCceeeeecceEEEeCCCeEEEE
Q 010344 315 TMTTGFVILD-ELGVPYPDDQPCVGEVGL-FPLYLGATDRLLNADHEEVYFSGMPIYKGMHLRRHGDIIKRTVGGYIIVQ 392 (512)
Q Consensus 315 ~~~~~~~i~d-~~~~~~~~g~~~~Gel~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~i~ 392 (512)
+++++++|+| +++++++.|+ .|||++ ++..+.+| +.+++.+...| +.++||+|||+|++|+||+++++
T Consensus 368 ~~~~~~~i~d~~~~~~~~~g~--~GEl~v~g~~v~~GY--~~~~~~t~~~f------~~~g~~~TGDl~~~~~dG~l~~~ 437 (548)
T 2d1s_A 368 VPLFKAKVIDLDTKKSLGPNR--RGEVCVKGPMLMKGY--VNNPEATKELI------DEEGWLHTGDIGYYDEEKHFFIV 437 (548)
T ss_dssp CTTCEEEEECTTTCCBCCTTC--CEEEEEESTTSCSEE--TTCHHHHHHHB------CTTSCEEEEEEEEECTTCCEEEE
T ss_pred CCCceEEEEeCCcCccCCCCC--CeEEEECCHHHhhhh--cCChHHhhhcc------cCCcEEEccCEEEEcCCCeEEEe
Confidence 9999999999 7899999999 699999 55554432 22233333323 34679999999999999999999
Q ss_pred eccCceeeecceecchHHHHHhhhcCCcceeeeeEEeeCCCCCCCceEEEEEEecCCCCCCcHHHHHHHHHHHHHhccCC
Q 010344 393 GRADDTMNLGGIKTSSVEIERVCDGADESILETAAISVSPAGGGPEVLVICVVLKKGFTSQPVDKLKMIFSKAIQRNLNP 472 (512)
Q Consensus 393 gR~~d~i~~~G~~v~~~~iE~~l~~~~~~v~~~~v~~~~~~~~~~~~~~a~v~~~~~~~~~~~~~l~~~~~~~~~~~l~~ 472 (512)
||.||+||++|++|+|.+||++|. +||+|.+++|++.+++..+ +.++++|+++++.. .+.+++.+ +++++|+.
T Consensus 438 GR~~d~ik~~G~~v~p~eIE~~l~-~~p~V~~a~V~~~~~~~~g-~~~~a~vv~~~~~~-~~~~~l~~----~~~~~l~~ 510 (548)
T 2d1s_A 438 DRLKSLIKYKGYQVPPAELESVLL-QHPSIFDAGVAGVPDPVAG-ELPGAVVVLESGKN-MTEKEVMD----YVASQVSN 510 (548)
T ss_dssp EEGGGCBCBTTCCBCHHHHHHHHH-TSTTEEEEEEEEEEETTTE-EEEEEEEEECTTCC-CCHHHHHH----HHHTTSCG
T ss_pred ccccceEEECCEEECHHHHHHHHH-hCCCccEEEEEEEEcCCCC-eeeEEEEEEcCCCC-CCHHHHHH----HHHHhccc
Confidence 999999999999999999999998 8999999999999988888 89999999987654 56555554 45578999
Q ss_pred cccee-eEEEecCCCCCCCchHHHHHHHHHHHhhhhc
Q 010344 473 LFKVS-LVKIVLEFPRTASNKLLRRVLKDQLKHELSV 508 (512)
Q Consensus 473 ~~~p~-~i~~~~~iP~t~~GKi~r~~l~~~~~~~~~~ 508 (512)
|++|+ .|+++++||+|++||++|++|++++++.++.
T Consensus 511 ~~~p~~~i~~v~~lP~t~~GKi~r~~L~~~~~~~i~~ 547 (548)
T 2d1s_A 511 AKRLRGGVRFVDEVPKGLTGKIDGRAIREILKKPVAK 547 (548)
T ss_dssp GGSCTTCEEECSSCCBCTTSCBCHHHHHHHHHSCC--
T ss_pred cccccccEEEccCCCCCCcchhHHHHHHHHHhhhhhc
Confidence 99999 9999999999999999999999999887653
No 7
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Probab=100.00 E-value=6.4e-73 Score=592.41 Aligned_cols=489 Identities=23% Similarity=0.353 Sum_probs=383.9
Q ss_pred cHHHHHHHHh-cc-CCCCCEEEEEcCCCHHHHHHHHHHHHhcceEeecCCCcCHHHHHHHHHhcCccEEEeccchhccCc
Q 010344 2 SYRLVANALD-TM-FSKGDAIAIDMPMTVHAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGR 79 (512)
Q Consensus 2 ~~~~~a~~L~-~~-i~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~iv~~~~~~~~~~ 79 (512)
.++++|++|+ +. +++||+|+|+++|++++++++|||+++|++++|+++.++.+++.+++++++|+++|+++......+
T Consensus 122 ~v~~lA~~L~~~~Gv~~Gd~V~i~~~~~~e~v~a~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~ 201 (663)
T 1ry2_A 122 EVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAIITLLAISRIGAIHSVVFAGFSSNSLRDRINDGDSKVVITTDESNRGGK 201 (663)
T ss_dssp HHHHHHHHHHHTSCCCTTCEEEECCCSSHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESBCCBTTB
T ss_pred HHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEEeeCCCCCHHHHHHHHHhcCCeEEEEccccccCCc
Confidence 3789999999 88 999999999999999999999999999999999999999999999999999999999986543333
Q ss_pred cccchhh---HHhcCCC--ceEEeeccCC-cccccccccCccHHHHhhccCCCCCCCCCCCCCCCCCCeEEEEecCCCCC
Q 010344 80 KFPLYSK---VAEAGPL--KAVVLPVIGD-DVGIQLRQQDVSWKDFLSCVDYHPGPKYYPPVYRPVDSVINILFSSGTTG 153 (512)
Q Consensus 80 ~~~~~~~---~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG 153 (512)
..+.... .....+. .++++..... .... .......|.++...... ..+.....++++++|+|||||||
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-----~~~~~~~~~~d~a~ilyTSGTTG 275 (663)
T 1ry2_A 202 VIETKRIVDDALRETPGVRHVLVYRKTNNPSVAF-HAPRDLDWATEKKKYKT-----YYPCTPVDSEDPLFLLYTSGSTG 275 (663)
T ss_dssp CCBHHHHHHHHTTSCTTCCEEEEECSSCCSSCCC-CSSSEEEHHHHHTTSCS-----CCCCCCEETTSCCEEEEECCSSS
T ss_pred ccchHHHHHHHHHhCCCCceEEEEecCCCCcccc-CCCccccHHHHHhhcCC-----CCCccccCCCCceEEEeccCCCC
Confidence 3332222 2222222 2233321110 0000 01123457777653221 12223346789999999999999
Q ss_pred CCceEEecCchhHHHHHH-hhccccccCCcEEEecCCccchhhh-HHHHhhhccCceEEEecCC---CchhhHHHHHHhc
Q 010344 154 EPKAIPWTQLSPIRCAAE-AWGHIDMKVGDVYCWPTNLGWVMGP-IILFSSFLSGAALALYHGS---PLERSFGKFVQDS 228 (512)
Q Consensus 154 ~pK~v~~s~~~~~~~~~~-~~~~~~~~~~~~~~~~~p~~~~~~~-~~~~~~l~~G~~~~~~~~~---~~~~~~~~~l~~~ 228 (512)
+||||+++|.++...... ....+++.++|++++..|++|..++ +.++.+|+.|++++++++. .++..+++.|+++
T Consensus 276 ~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~~~~~L~~G~t~v~~~~~~~~~~~~~~~~~i~~~ 355 (663)
T 1ry2_A 276 APKGVQHSTAGYLLGALLTMRYTFDTHQEDVFFTAGDIGWITGHTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDIIDEH 355 (663)
T ss_dssp SCEEEEECSHHHHHHHHHHHHHHSCCCSSCEEEECSCTTSHHHHHHTTHHHHHHTSEEEEECSCTTSSCTTHHHHHHHHT
T ss_pred CCceEEEchhHHHHHHHHHHHHhcCCCCCcEEEEcCCcHHhhhhHHHHHHHHHhCCEEEEECCCCCCCCHHHHHHHHHHc
Confidence 999999999998766543 3345788999999999999999998 4588999999999998753 4678999999999
Q ss_pred CceEEecchHHHHHHHccCC--CCCCCcCceeEEEeecCCCCchhhHHHHHhhC--CCCeeeecCCccccceecccCC--
Q 010344 229 GVSVLGTVPSLVKAWKNTNC--LQGLDWTKIRSFASTGETSNVDDDLWLASKAY--YKPIIECCGGTELASSYIQGSM-- 302 (512)
Q Consensus 229 ~~t~l~~~P~~~~~l~~~~~--~~~~~l~~l~~i~~~G~~l~~~~~~~~~~~~~--~~~i~~~yG~tE~~~~~~~~~~-- 302 (512)
++|+++++|++++.|++... ....++++||.++++||++++++.+++.+.++ .+++++.||+||++..++....
T Consensus 356 ~vt~~~~~Ps~~~~l~~~~~~~~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~~~~~~~~~~~~ 435 (663)
T 1ry2_A 356 KVTQFYVAPTALRLLKRAGDSYIENHSLKSLRCLGSVGEPIAAEVWEWYSEKIGKNEIPIVDTYWQTESGSHLVTPLAGG 435 (663)
T ss_dssp TCSEEEECHHHHHHHTTSCTTSSSSCCCTTCCEEEECSSCCCHHHHHHHHHTTSCSSSCEEECBCCTTTCSCSEECCTTT
T ss_pred CCCEEEecHHHHHHHHhcCccccccCCcCceEEEEEEcCCCCHHHHHHHHHHhCCCCceEEEeECCccccCeeeccCCCC
Confidence 99999999999999987653 34567899999999999999999999998873 2789999999999876554432
Q ss_pred CCCCcccccccccCCccEEEeCC-CCCCCCC-CCCccccccccccccccccccccc-Ccce-eEEecCCcccCceeeeec
Q 010344 303 LQPQAFGAFSTATMTTGFVILDE-LGVPYPD-DQPCVGEVGLFPLYLGATDRLLNA-DHEE-VYFSGMPIYKGMHLRRHG 378 (512)
Q Consensus 303 ~~~~~~~~~G~p~~~~~~~i~d~-~~~~~~~-g~~~~Gel~v~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~TG 378 (512)
......+++|.|++|++++|+|+ +|++++. |+ .|||+++....+...+|.++ +.+. .++. ..+|||+||
T Consensus 436 ~~~~~~gs~G~p~~g~~v~i~d~~~g~~v~~~g~--~Gel~i~g~~p~~~~gy~~~~~~~~~~~~~-----~~~g~y~TG 508 (663)
T 1ry2_A 436 VTPMKPGSASFPFFGIDAVVLDPNTGEELNTSHA--EGVLAVKAAWPSFARTIWKNHDRYLDTYLN-----PYPGYYFTG 508 (663)
T ss_dssp CCCCCTTCCCEECTTCCEEEECSSSTTCEECSSC--EEEEEESSCCTTSCCEETTCHHHHHHHHTS-----SSTTSEEEE
T ss_pred CcccCCCccccCcCCCeEEEEcCCCCCcCCCCCc--ceEEEEecCCCchhcccccChHHHHHhhhc-----CCCCEEEcC
Confidence 23456789999999999999998 8999988 87 69999943222212222222 2211 1221 235799999
Q ss_pred ceEEEeCCCeEEEEeccCceeeecceecchHHHHHhhhcCCcceeeeeEEeeCCCCCCCceEEEEEEecCCCCCC-c-HH
Q 010344 379 DIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDGADESILETAAISVSPAGGGPEVLVICVVLKKGFTSQ-P-VD 456 (512)
Q Consensus 379 D~~~~~~~g~l~i~gR~~d~i~~~G~~v~~~~iE~~l~~~~~~v~~~~v~~~~~~~~~~~~~~a~v~~~~~~~~~-~-~~ 456 (512)
|+|++|+||+++|+||+||+||++|++|+|.|||++|. +||.|.+++|++.+++..+ +.++++|+++++.... . .+
T Consensus 509 Dlg~~d~dG~l~i~GR~dd~Ik~~G~rI~~~eIE~~l~-~~p~V~ea~Vvg~~~~~~g-~~~~a~Vv~~~~~~~~~~~~~ 586 (663)
T 1ry2_A 509 DGAAKDKDGYIWILGRVDDVVNVSGHRLSTAEIEAAII-EDPIVAECAVVGFNDDLTG-QAVAAFVVLKNKSSWSTATDD 586 (663)
T ss_dssp EEEEECTTCCEEECSCTTSCBCSSSCCBCHHHHHHHHH-SSTTEEEEEEECCCCCTTS-CCCEEEEEEC-----------
T ss_pred CEEEEcCCCCEEEEeecCCEEEECCEEcCHHHHHHHHH-hCCCcceEEEEEEecCCCC-eEEEEEEEEcCCCccccccch
Confidence 99999999999999999999999999999999999998 9999999999999988888 8999999998753200 1 11
Q ss_pred ---HHHHHHHHHHHhccCCccceeeEEEecCCCCCCCchHHHHHHHHHHHhh
Q 010344 457 ---KLKMIFSKAIQRNLNPLFKVSLVKIVLEFPRTASNKLLRRVLKDQLKHE 505 (512)
Q Consensus 457 ---~l~~~~~~~~~~~l~~~~~p~~i~~~~~iP~t~~GKi~r~~l~~~~~~~ 505 (512)
++.+.++++++++|++|++|..|+++++||+|++||++|+.|++++.++
T Consensus 587 ~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~T~sGKi~R~~L~~~~~~~ 638 (663)
T 1ry2_A 587 ELQDIKKHLVFTVRKDIGPFAAPKLIILVDDLPKTRSGKIMRRILRKILAGE 638 (663)
T ss_dssp -CCSHHHHHHHHHHHHTCTTTSCSEEEECSCCCBCTTSCBCHHHHHHSCC--
T ss_pred hHHHHHHHHHHHHHHhCCCCcCCeEEEEcCCCCCCCccCchHHHHHHHHcCC
Confidence 4677888888899999999999999999999999999999999988765
No 8
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*
Probab=100.00 E-value=1e-71 Score=568.99 Aligned_cols=464 Identities=19% Similarity=0.173 Sum_probs=389.4
Q ss_pred cHHHHHHHHhcc--CCCCCEEEEEcCCCHHHHHHHHHHHHhcceEeecCCCcCHHHHHHHHHhcCccEEEeccchhccCc
Q 010344 2 SYRLVANALDTM--FSKGDAIAIDMPMTVHAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGR 79 (512)
Q Consensus 2 ~~~~~a~~L~~~--i~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~iv~~~~~~~~~~ 79 (512)
.++++|++|++. .++||+|+++++|++++++++|||+++|++++|+++.++.+++.+++++++++++|+++....
T Consensus 35 ~~~~~A~~L~~~~~~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~--- 111 (511)
T 3e7w_A 35 QSDRAAAAIQKRISGEKKSPILVYGHMEPHMIVSFLGSVKAGHPYIPVDLSIPSERIAKIIESSGAELLIHAAGLSI--- 111 (511)
T ss_dssp HHHHHHHHHTTTSCSSSCCCEEEEESSCHHHHHHHHHHHHHTCCEEEEETTSCHHHHHHHHHHHTCCEEEESSSCCT---
T ss_pred HHHHHHHHHHHhcCCCCCCeEEEEecCCHHHHHHHHHHHHhCCEEEecCCCChHHHHHHHHHhCCCCEEEecccccc---
Confidence 378999999885 889999999999999999999999999999999999999999999999999999999763210
Q ss_pred cccchhhHHhcCCCceEEeeccCCcccccccccCccHHHHhhccCCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCceEE
Q 010344 80 KFPLYSKVAEAGPLKAVVLPVIGDDVGIQLRQQDVSWKDFLSCVDYHPGPKYYPPVYRPVDSVINILFSSGTTGEPKAIP 159 (512)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~ 159 (512)
.. ... ......+.++...... .........++++++++|||||||.||+|+
T Consensus 112 --~~-------~~~----------------~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~ 162 (511)
T 3e7w_A 112 --DA-------VGQ----------------QIQTVSAEELLENEGG----SVSQDQWVKEHETFYIIYTSGSTGNPKGVQ 162 (511)
T ss_dssp --TC-------CCC----------------SSCEEEHHHHHTSCSC----CCCGGGSCCTTSEEEEEEECCTTSSCEEEE
T ss_pred --hh-------ccc----------------ccceecHhhhhccccC----CccccccCCCCCeEEEEECCCCCCCCCEEE
Confidence 00 000 0112234444433222 111122345788999999999999999999
Q ss_pred ecCchhHHHHHHhhccccccCCcEEEecCCccchhhhHHHHhhhccCceEEEecCC--CchhhHHHHHHhcCceEEecch
Q 010344 160 WTQLSPIRCAAEAWGHIDMKVGDVYCWPTNLGWVMGPIILFSSFLSGAALALYHGS--PLERSFGKFVQDSGVSVLGTVP 237 (512)
Q Consensus 160 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~--~~~~~~~~~l~~~~~t~l~~~P 237 (512)
+||+++.+.+.+....+++.++|++++..|++|..++..++.++..|+++++.+.. .++..+++.++++++|++.++|
T Consensus 163 ~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P 242 (511)
T 3e7w_A 163 ISAANLQSFTDWICADFPVSGGKIFLNQAPFSFDLSVMDLYPCLQSGGTLHCVTKDAVNKPKVLFEELKKSGLNVWTSTP 242 (511)
T ss_dssp EEHHHHHHHHHHHHHHSTTTTTCEEEECSCTTSTHHHHHHHHHHHTTCEEEECCHHHHHSHHHHHHHHHHHCCSEEEECH
T ss_pred EcHHHHHHHHHHHHHhcCCCccceEEEeCCccHHHHHHHHHHHHhcCCEEEEcChhhhcCHHHHHHHHHHcCCcEEEecH
Confidence 99999999988888888999999999999999999988899999999999997643 4678899999999999999999
Q ss_pred HHHHHHHccCCCCCCCcCceeEEEeecCCCCchhhHHHHHhhCCCCeeeecCCccccceecccCCC----CCCccccccc
Q 010344 238 SLVKAWKNTNCLQGLDWTKIRSFASTGETSNVDDDLWLASKAYYKPIIECCGGTELASSYIQGSML----QPQAFGAFST 313 (512)
Q Consensus 238 ~~~~~l~~~~~~~~~~l~~l~~i~~~G~~l~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~----~~~~~~~~G~ 313 (512)
+++..++.........++++|.+++||+++++++.+.+.+.++++++++.||+||++..++..... ......++|.
T Consensus 243 ~~~~~l~~~~~~~~~~~~~l~~~~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~ 322 (511)
T 3e7w_A 243 SFVQMCLMDPGFSQDLLPHADTFMFCGEVLPVSVAKALLERFPKAKIFNTYGPTEATVAVTSVEITNDVISRSESLPVGF 322 (511)
T ss_dssp HHHHHHHTSTTCSTTTCTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEECCCCGGGSSCSEEEEECHHHHTTCSSCCCBE
T ss_pred HHHHHHHhccccccccCCcccEEEEecCCCCHHHHHHHHHHCCCcEEEeCcccchheeeeeEEeccccccccCCcCCCcc
Confidence 999999988766677889999999999999999999999999889999999999998765543221 1234467999
Q ss_pred ccCCccEEEeCCCCCCCCCCCCccccccc-ccccccccccccccCcceeEEecCCcccCceeeeecceEEEeCCCeEEEE
Q 010344 314 ATMTTGFVILDELGVPYPDDQPCVGEVGL-FPLYLGATDRLLNADHEEVYFSGMPIYKGMHLRRHGDIIKRTVGGYIIVQ 392 (512)
Q Consensus 314 p~~~~~~~i~d~~~~~~~~g~~~~Gel~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~i~ 392 (512)
|.++++++|+|++|++++.|+ .|||++ ++..+.+| +.+++.+...|..+ ++.+||+|||+|++ +||+++++
T Consensus 323 ~~~~~~~~i~d~~g~~~~~g~--~GEl~v~g~~v~~GY--~~~~~~t~~~f~~~---~g~~~~~TGDlg~~-~dG~l~~~ 394 (511)
T 3e7w_A 323 AKPDMNIFIMDEEGQPLPEGE--KGEIVIAGPSVSRGY--LGEPELTEKAFFSH---EGQWAYRTGDAGFI-QDGQIFCQ 394 (511)
T ss_dssp ECTTCEEEEECTTSCBCCTTC--CEEEEEESTTSCCCB--TTCHHHHHHHEEES---SSSEEEEEEEEEEE-ETTEEEEE
T ss_pred eeCCCEEEEECCCCCCCCCCC--ceEEEEecCccChhh--CCCcccchhhhcCC---CCCEEEeCCCeEEc-cCCeEEEE
Confidence 999999999999999999999 699999 66555432 23444444433221 35568999999999 59999999
Q ss_pred eccCceeeecceecchHHHHHhhhcCCcceeeeeEEeeCCCCCCCceEEEEEEecCCCCCCcHHHHHHHHHHHHHhccCC
Q 010344 393 GRADDTMNLGGIKTSSVEIERVCDGADESILETAAISVSPAGGGPEVLVICVVLKKGFTSQPVDKLKMIFSKAIQRNLNP 472 (512)
Q Consensus 393 gR~~d~i~~~G~~v~~~~iE~~l~~~~~~v~~~~v~~~~~~~~~~~~~~a~v~~~~~~~~~~~~~l~~~~~~~~~~~l~~ 472 (512)
||.||+||++|++|+|.+||++|. +||+|.+++|++.+++..+ +.++++|+.+++.. .+..++.+.+++++.++|+.
T Consensus 395 GR~~d~ik~~G~~v~p~eIE~~l~-~~p~V~~a~vv~~~~~~~~-~~~~a~vv~~~~~~-~~~~~~~~~l~~~l~~~L~~ 471 (511)
T 3e7w_A 395 GRLDFQIKLHGYRMELEEIEFHVR-QSQYVRSAVVIPYQPNGTV-EYLIAAIVPEEHEF-EKEFQLTSAIKKELAASLPA 471 (511)
T ss_dssp EESSSEEEETTEEEEHHHHHHHHH-HSTTEEEEEEEEECSSSSC-CEEEEEEEECCCCC-SSHHHHHHHHHHHHHHHSCG
T ss_pred ccccCEEEECCEEeCHHHHHHHHH-hCCCcceEEEEEEcCCCCc-eEEEEEEEeccccc-cchhhHHHHHHHHHHhhCch
Confidence 999999999999999999999998 8999999999999988787 89999999987655 56667888899999999999
Q ss_pred ccceeeEEEecCCCCCCCchHHHHHHHHHHHhhhhc
Q 010344 473 LFKVSLVKIVLEFPRTASNKLLRRVLKDQLKHELSV 508 (512)
Q Consensus 473 ~~~p~~i~~~~~iP~t~~GKi~r~~l~~~~~~~~~~ 508 (512)
|++|+.|+++++||+|++||++|++|++++.+.-..
T Consensus 472 ~~~P~~~~~v~~lP~t~~GKi~R~~L~~~~~~~~~~ 507 (511)
T 3e7w_A 472 YMIPRKFIYQDHIQMTANGKIDRKRIGEEVLVRSHH 507 (511)
T ss_dssp GGSCSEEEECSCCCBCTTSCBCHHHHHHHHHHHHTC
T ss_pred hhCCeeEEEeccCCCCCCcCccHHHHHhHHhhhccc
Confidence 999999999999999999999999999999876443
No 9
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A
Probab=100.00 E-value=1.9e-72 Score=577.42 Aligned_cols=471 Identities=17% Similarity=0.187 Sum_probs=379.2
Q ss_pred cHHHHHHHHhcc-CCCCCEEEEEcCCCHHHHHHHHHHHHhcceEeecCCCcCHHHHHHHHHhcCccEEEeccchhccCcc
Q 010344 2 SYRLVANALDTM-FSKGDAIAIDMPMTVHAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRK 80 (512)
Q Consensus 2 ~~~~~a~~L~~~-i~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~iv~~~~~~~~~~~ 80 (512)
.++++|++|++. +++||+|+++++|++++++++|||+++|++++|++|.++.+++.+++++++++++|+++.... ...
T Consensus 59 ~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~-~~~ 137 (539)
T 1mdb_A 59 RADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIFALFRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSG-FDY 137 (539)
T ss_dssp HHHHHHHHHHHHTCCTTCEEEECCCSSHHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHTTCSEEEEESEETT-EEH
T ss_pred HHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCeEEecCCCCCCHHHHHHHHHhCCCCEEEecccccc-ccH
Confidence 378999999999 999999999999999999999999999999999999999999999999999999999874210 000
Q ss_pred ccchhhHHhcCCC-ceEEeeccCCcccccccccCccHHHHhhccCCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCceEE
Q 010344 81 FPLYSKVAEAGPL-KAVVLPVIGDDVGIQLRQQDVSWKDFLSCVDYHPGPKYYPPVYRPVDSVINILFSSGTTGEPKAIP 159 (512)
Q Consensus 81 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~ 159 (512)
......+....+. ..+++.... ..|.++...... ........++++++++|||||||.||||+
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~-----~~~~~~~~~~d~a~i~~TSGTTG~PKgV~ 201 (539)
T 1mdb_A 138 RSLARQVQSKLPTLKNIIVAGEA-----------EEFLPLEDLHTE-----PVKLPEVKSSDVAFLQLSGGSTGLSKLIP 201 (539)
T ss_dssp HHHHHHHHHHCTTCCCEEEESCC-----------TTSEEGGGCCCC-----CCCCCCCCTTSEEEEEECCCSSSSCCEEE
T ss_pred HHHHHHHHhcCCCccEEEEcCCc-----------cchhhhhhcccc-----ccccCCCCcCceEEEEeCCCcCCCCcEEE
Confidence 0122223332222 222221110 012222221111 11123346789999999999999999999
Q ss_pred ecCchhHHHHHHhhccccccCCcEEEecCCccchhhhH--HHHhhhccCceEEEecCCCchhhHHHHHHhcCceEEecch
Q 010344 160 WTQLSPIRCAAEAWGHIDMKVGDVYCWPTNLGWVMGPI--ILFSSFLSGAALALYHGSPLERSFGKFVQDSGVSVLGTVP 237 (512)
Q Consensus 160 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~--~~~~~l~~G~~~~~~~~~~~~~~~~~~l~~~~~t~l~~~P 237 (512)
++|+++.+.+......+++.++|++++.+|++|.+++. .++.+++.|+++++.+ ..++..+++.|+++++|++.++|
T Consensus 202 ~th~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~i~~~~~t~~~~~P 280 (539)
T 1mdb_A 202 RTHDDYIYSLKRSVEVCWLDHSTVYLAALPMAHNYPLSSPGVLGVLYAGGRVVLSP-SPSPDDAFPLIEREKVTITALVP 280 (539)
T ss_dssp EEHHHHHHHHHHHHHHHTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEEECS-SSSHHHHHHHHHHHTCSEEEECH
T ss_pred EehHHHHHHHHHHHHhhCCCCCCEEEEeecccccchhhHHHHHHHHHhCCEEEECC-CCCHHHHHHHHHHcCCeEEEccH
Confidence 99999999888877778899999999999999999986 4889999999999976 56789999999999999999999
Q ss_pred HHHHHHHccCCCCCCCcCceeEEEeecCCCCchhhHHHHHhhCCCCeeeecCCccccceecccCCCCCCcccccccccCC
Q 010344 238 SLVKAWKNTNCLQGLDWTKIRSFASTGETSNVDDDLWLASKAYYKPIIECCGGTELASSYIQGSMLQPQAFGAFSTATMT 317 (512)
Q Consensus 238 ~~~~~l~~~~~~~~~~l~~l~~i~~~G~~l~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~G~p~~~ 317 (512)
+++..|++.......+++++|.+++||+++++++.+.+.+.+ ++++++.||+||++..+...........+++|+|+++
T Consensus 281 ~~~~~l~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~-~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~G~p~~~ 359 (539)
T 1mdb_A 281 PLAMVWMDAASSRRDDLSSLQVLQVGGAKFSAEAARRVKAVF-GCTLQQVFGMAEGLVNYTRLDDPEEIIVNTQGKPMSP 359 (539)
T ss_dssp HHHHHHHHHHHHCCCCCTTCCEEEEESSCCCHHHHTTHHHHT-CSEEEEEEECTTSCEEECCTTSCHHHHHHCCCEESST
T ss_pred HHHHHHHhCccccCCCccceeEEEEcCCCCCHHHHHHHHHHh-CCcEEEEEcCCCCcccccCCCCcHHhcCCCCCcccCC
Confidence 999999876555567889999999999999999999998887 7899999999997643332111112245789999976
Q ss_pred c-cEEEeCCCCCCCCCCCCccccccc-ccccccccccccccCcceeEEecCCcccCceeeeecceEEEeCCCeEEEEecc
Q 010344 318 T-GFVILDELGVPYPDDQPCVGEVGL-FPLYLGATDRLLNADHEEVYFSGMPIYKGMHLRRHGDIIKRTVGGYIIVQGRA 395 (512)
Q Consensus 318 ~-~~~i~d~~~~~~~~g~~~~Gel~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~i~gR~ 395 (512)
. +++|+|+++++++.|+ .|||++ ++..+.+| +.+++.+...| ..++||+|||+|++|+||+++++||.
T Consensus 360 ~~~~~i~d~~~~~~~~g~--~GEl~v~g~~v~~GY--~~~~~~t~~~f------~~~g~~~TGDlg~~~~dG~l~~~GR~ 429 (539)
T 1mdb_A 360 YDESRVWDDHDRDVKPGE--TGHLLTRGPYTIRGY--YKAEEHNAASF------TEDGFYRTGDIVRLTRDGYIVVEGRA 429 (539)
T ss_dssp TCEEEEECTTSCBCCTTC--CEEEEEECTTSCSSC--TTCHHHHHHHB------CTTSCEEEEEEEEECTTSCEEEEEEG
T ss_pred CceEEEECCCCCCCcCCC--cceEEeeCcccchhh--cCChhhhhhhc------cCCCCeecCceEEECCCCcEEEeccc
Confidence 4 7999999999999999 699999 56555432 22333333333 24579999999999999999999999
Q ss_pred CceeeecceecchHHHHHhhhcCCcceeeeeEEeeCCCCCCCceEEEEEEecCCCCCCcHHHHHHHHHHHHHhc-cCCcc
Q 010344 396 DDTMNLGGIKTSSVEIERVCDGADESILETAAISVSPAGGGPEVLVICVVLKKGFTSQPVDKLKMIFSKAIQRN-LNPLF 474 (512)
Q Consensus 396 ~d~i~~~G~~v~~~~iE~~l~~~~~~v~~~~v~~~~~~~~~~~~~~a~v~~~~~~~~~~~~~l~~~~~~~~~~~-l~~~~ 474 (512)
||+||++|++|+|.+||++|. +||+|.+++|++.+++..+ +.++++|++++. . .+.+++.++++ ++ |+.|+
T Consensus 430 dd~ik~~G~~v~p~eIE~~l~-~~p~V~~a~vv~~~~~~~g-~~~~a~vv~~~~-~-~~~~~l~~~l~----~~~L~~~~ 501 (539)
T 1mdb_A 430 KDQINRGGEKVAAEEVENHLL-AHPAVHDAAMVSMPDQFLG-ERSCVFIIPRDE-A-PKAAELKAFLR----ERGLAAYK 501 (539)
T ss_dssp GGCEECSSCEECHHHHHHHHT-TSTTEEEEEEEEEEETTTE-EEEEEEEEESSS-C-CCHHHHHHHHH----HTTCCGGG
T ss_pred cceEEECCEEECHHHHHHHHH-hCCCcceEEEEeccccccC-ceEEEEEEECCC-C-CCHHHHHHHHH----hCCCCccc
Confidence 999999999999999999998 8999999999999988888 899999998743 2 56666655554 55 99999
Q ss_pred ceeeEEEecCCCCCCCchHHHHHHHHHHHhhhhcc
Q 010344 475 KVSLVKIVLEFPRTASNKLLRRVLKDQLKHELSVR 509 (512)
Q Consensus 475 ~p~~i~~~~~iP~t~~GKi~r~~l~~~~~~~~~~~ 509 (512)
+|+.|+++++||+|++||++|++|++++.++++..
T Consensus 502 ~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~~i~~~ 536 (539)
T 1mdb_A 502 IPDRVEFVESFPQTGVGKVSKKALREAISEKLLAG 536 (539)
T ss_dssp SCSEEEECSSCCBCTTSCBCHHHHHHHHHHHHHTC
T ss_pred CCCEEEEeccCCCCCCcCEeHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999888754
No 10
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*
Probab=100.00 E-value=1.1e-72 Score=576.42 Aligned_cols=466 Identities=17% Similarity=0.166 Sum_probs=384.1
Q ss_pred cHHHHHHHHhcc-CCCCCEEEEEcCCCHHHHHHHHHHHHhcceEeecCCCcCHHHHHHHHHhcCccEEEeccchhccCcc
Q 010344 2 SYRLVANALDTM-FSKGDAIAIDMPMTVHAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRK 80 (512)
Q Consensus 2 ~~~~~a~~L~~~-i~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~iv~~~~~~~~~~~ 80 (512)
.++++|++|++. +++||+|+++++|++++++++|||+++|++++|+++.++.+++.++++++++++++++.....
T Consensus 35 ~~~~lA~~L~~~g~~~gd~V~i~~~n~~e~~~~~la~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~~i~~~~~~~---- 110 (512)
T 3fce_A 35 DSDALAHWISSEYPDDRSPIMVYGHMQPEMIINFLGCVKAGHAYIPVDLSIPADRVQRIAENSGAKLLLSATAVTV---- 110 (512)
T ss_dssp HHHHHHHHHHHHSTTCCCCEEEEESSCHHHHHHHHHHHHTTCCEEEEETTSCHHHHHHHHHHSCCCEEEESSCCCS----
T ss_pred HHHHHHHHHHHhCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEEeeCCCCcHHHHHHHHHhcCCCEEEecCcccc----
Confidence 478999999999 999999999999999999999999999999999999999999999999999999999863210
Q ss_pred ccchhhHHhcCCCceEEeeccCCcccccccccCccHHHHhhccCCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEe
Q 010344 81 FPLYSKVAEAGPLKAVVLPVIGDDVGIQLRQQDVSWKDFLSCVDYHPGPKYYPPVYRPVDSVINILFSSGTTGEPKAIPW 160 (512)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~ 160 (512)
. ... ..++. ...+.++...... ....+.....++++++++|||||||.||+|++
T Consensus 111 -~-------~~~--~~~~~-------------~~~~~~~~~~~~~---~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~ 164 (512)
T 3fce_A 111 -T-------DLP--VRIVS-------------EDNLKDIFFTHKG---NTPNPEHAVKGDENFYIIYTSGSTGNPKGVQI 164 (512)
T ss_dssp -S-------CCS--SEEEE-------------THHHHHHHHHTTT---CCCCGGGSCCTTSEEEEEEECC----CEEEEE
T ss_pred -c-------ccc--cceec-------------hhhhhhhcccccc---cCCCccccCCCCCeEEEEECCCCCCCCceEEE
Confidence 0 000 01110 0112222221111 11112233567899999999999999999999
Q ss_pred cCchhHHHHHHhhccccccCCcEEEecCCccchhhhHHHHhhhccCceEEEecCC--CchhhHHHHHHhcCceEEecchH
Q 010344 161 TQLSPIRCAAEAWGHIDMKVGDVYCWPTNLGWVMGPIILFSSFLSGAALALYHGS--PLERSFGKFVQDSGVSVLGTVPS 238 (512)
Q Consensus 161 s~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~--~~~~~~~~~l~~~~~t~l~~~P~ 238 (512)
||+++.+.+.+....+++.++|++++..|++|..++..++.+++.|+++++.+.. .++..+++.++++++|++.++|+
T Consensus 165 th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~ 244 (512)
T 3fce_A 165 TYNCLVSFTKWAVEDFNLQTGQVFLNQAPFSFDLSVMDIYPSLVTGGTLWAIDKDMIARPKDLFASLEQSDIQVWTSTPS 244 (512)
T ss_dssp EHHHHHHHHHHHHHHTTCCSSCEEEECSCTTSGGGHHHHHHHHHTTCEEEECCHHHHHSHHHHHHHHHHHCCCEEEECHH
T ss_pred ehHHHHHHHHHHHHhcCCCCCCEEEEeCCccHhHHHHHHHHHHhCCCEEEECCHHHhhCHHHHHHHHHHcCCcEEEecHH
Confidence 9999999988888888999999999999999999998899999999999997643 46789999999999999999999
Q ss_pred HHHHHHccCCCCCCCcCceeEEEeecCCCCchhhHHHHHhhCCCCeeeecCCccccceecccCCCC----CCcccccccc
Q 010344 239 LVKAWKNTNCLQGLDWTKIRSFASTGETSNVDDDLWLASKAYYKPIIECCGGTELASSYIQGSMLQ----PQAFGAFSTA 314 (512)
Q Consensus 239 ~~~~l~~~~~~~~~~l~~l~~i~~~G~~l~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~----~~~~~~~G~p 314 (512)
++..++........+++++|.+++||+++++++.+.+.+.++++++++.||+||++..++...... .....++|.|
T Consensus 245 ~~~~l~~~~~~~~~~~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~~ 324 (512)
T 3fce_A 245 FAEMCLMEASFSESMLPNMKTFLFCGEVLPNEVARKLIERFPKATIMNTYGPTEATVAVTGIHVTEEVLDQYKSLPVGYC 324 (512)
T ss_dssp HHHHHTTSTTCSTTTSTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEEEECCGGGSSCSEEEECCHHHHHHCSSCCCEEE
T ss_pred HHHHHHhhccccchhCccccEEEEecCcCCHHHHHHHHHHCCCCEEEeCcccChhhhheeeEEeccccccccCCCccccc
Confidence 999998877667778899999999999999999999999998899999999999987655432211 1245689999
Q ss_pred cCCccEEEeCCCCCCCCCCCCccccccc-ccccccccccccccCcceeEEecCCcccCceeeeecceEEEeCCCeEEEEe
Q 010344 315 TMTTGFVILDELGVPYPDDQPCVGEVGL-FPLYLGATDRLLNADHEEVYFSGMPIYKGMHLRRHGDIIKRTVGGYIIVQG 393 (512)
Q Consensus 315 ~~~~~~~i~d~~~~~~~~g~~~~Gel~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~i~g 393 (512)
.++++++|+|++|++++.|+ .|||++ ++..+.+| +.+++.+...|.. .++++||+|||+|++ +||+++++|
T Consensus 325 ~~~~~~~i~d~~g~~~~~g~--~GEl~v~g~~v~~GY--~~~~~~t~~~f~~---~~~~~~~~TGDlg~~-~dG~l~i~G 396 (512)
T 3fce_A 325 KSDCRLLIMKEDGTIAPDGE--KGEIVIVGPSVSVGY--LGSPELTEKAFTM---IDGERAYKTGDAGYV-ENGLLFYNG 396 (512)
T ss_dssp CTTCEEEEECSSSCBCCTTS--CEEEEEESTTSCSCB--TTCHHHHHHHEEE---ETTEEEEEEEEEEEE-ETTEEEEEE
T ss_pred cCCcEEEEECCCCCCCCCCC--eEEEEEeccccChhh--cCCchhhhhcccc---CCCCEEEeCCceEEe-cCCEEEEec
Confidence 99999999999999999999 699999 66555432 2344444444421 256789999999999 799999999
Q ss_pred ccCceeeecceecchHHHHHhhhcCCcceeeeeEEeeCCCCCCCceEEEEEEecCCCCCCcHHHHHHHHHHHHHhccCCc
Q 010344 394 RADDTMNLGGIKTSSVEIERVCDGADESILETAAISVSPAGGGPEVLVICVVLKKGFTSQPVDKLKMIFSKAIQRNLNPL 473 (512)
Q Consensus 394 R~~d~i~~~G~~v~~~~iE~~l~~~~~~v~~~~v~~~~~~~~~~~~~~a~v~~~~~~~~~~~~~l~~~~~~~~~~~l~~~ 473 (512)
|.||+||++|++|+|.+||++|. +||+|.+++|++.++...+ +.++++|++.++.. .+..++.+.++++++++|+.|
T Consensus 397 R~~d~ik~~G~~v~p~eIE~~l~-~~p~V~~a~vv~~~~~~~~-~~~~a~vv~~~~~~-~~~~~~~~~l~~~l~~~L~~~ 473 (512)
T 3fce_A 397 RLDFQIKLHGYRMELEEIEHHLR-ACSYVEGAVIVPIKKGEKY-DYLLAVVVPGEHSF-EKEFKLTSAIKKELNERLPNY 473 (512)
T ss_dssp EGGGCEEETTEEECHHHHHHHHH-HSTTEEEEEEEEEEETTEE-EEEEEEEEECSCCC-SSHHHHHHHHHHHHHTTSCGG
T ss_pred ccCCEEEECCEEECHHHHHHHHH-hCCCcceEEEEEEecCCCc-eEEEEEEecCCccc-cchhhhHHHHHHHHHhhCchh
Confidence 99999999999999999999998 8999999999999887777 88999999987654 556677888999999999999
Q ss_pred cceeeEEEecCCCCCCCchHHHHHHHHHHHhhhhc
Q 010344 474 FKVSLVKIVLEFPRTASNKLLRRVLKDQLKHELSV 508 (512)
Q Consensus 474 ~~p~~i~~~~~iP~t~~GKi~r~~l~~~~~~~~~~ 508 (512)
++|+.|+++++||+|++||++|++|++.++++-..
T Consensus 474 ~~P~~~~~~~~lP~t~~GKi~R~~L~~~~~~~~~~ 508 (512)
T 3fce_A 474 MIPRKFMYQSSIPMTPNGKVDRKKLLSEVTALEHH 508 (512)
T ss_dssp GSCSEEEECSCCCBCTTSSBCHHHHHHHHHC----
T ss_pred cCCeEEEEecccCCCCCcChHHHHHHhhhhhcccc
Confidence 99999999999999999999999999999876443
No 11
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A
Probab=100.00 E-value=1.5e-72 Score=575.21 Aligned_cols=462 Identities=21% Similarity=0.204 Sum_probs=375.8
Q ss_pred cHHHHHHHHhcc-CCCCCEEEEEcCCCHHHHHHHHHHHHhcceEeecCCCcCHHHHHHHHHhcCccEEEeccchhccCcc
Q 010344 2 SYRLVANALDTM-FSKGDAIAIDMPMTVHAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRK 80 (512)
Q Consensus 2 ~~~~~a~~L~~~-i~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~iv~~~~~~~~~~~ 80 (512)
.++++|++|++. +++||+|+++++|++++++++|||+++|++++|++|.++.+++.+++++++++++|++....
T Consensus 52 ~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~----- 126 (517)
T 3r44_A 52 LANRCADVLTALGIAKGDRVALLMPNSVEFCCLFYGAAKLGAVAVPINTRLAAPEVSFILSDSGSKVVIYGAPSA----- 126 (517)
T ss_dssp HHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHHTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGH-----
T ss_pred HHHHHHHHHHHcCCCCcCEEEEEcCCCHHHHHHHHHHHHhCcEEEecCcccCHHHHHHHHHhcCceEEEECCchH-----
Confidence 378999999999 99999999999999999999999999999999999999999999999999999999997432
Q ss_pred ccchhhHHhcCCCceEEeeccCCcccccccccCccHHHHhhccCCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEe
Q 010344 81 FPLYSKVAEAGPLKAVVLPVIGDDVGIQLRQQDVSWKDFLSCVDYHPGPKYYPPVYRPVDSVINILFSSGTTGEPKAIPW 160 (512)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~ 160 (512)
+.+..+.........++.. .....+.+....... ..+.....++++++++|||||||.||+|++
T Consensus 127 -~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~-----~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~ 190 (517)
T 3r44_A 127 -PVIDAIRAQADPPGTVTDW----------IGADSLAERLRSAAA-----DEPAVECGGDDNLFIMYTSGTTGHPKGVVH 190 (517)
T ss_dssp -HHHHHHHHSSSCCTTCCEE----------EEHHHHHHHHHHCCC-----CCCCCCCCTTSEEEEEEECC---CCEEEEE
T ss_pred -HHHHHHHhccCCccEEEEc----------cCcccHHHHhhccCc-----CCCCCCCCCCCeEEEEECCcccccCceeee
Confidence 2333333222211101100 001234444433222 122334567899999999999999999999
Q ss_pred cCchhHHHHHHhhccccccCCcEEEecCCccchhhhHHHHhhhccCceEEEecCCCchhhHHHHHHhcCceEEecchHHH
Q 010344 161 TQLSPIRCAAEAWGHIDMKVGDVYCWPTNLGWVMGPIILFSSFLSGAALALYHGSPLERSFGKFVQDSGVSVLGTVPSLV 240 (512)
Q Consensus 161 s~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~l~~~~~t~l~~~P~~~ 240 (512)
||+++.+.+......+++.++|++++.+|++|..++...+.+++.|+++++.+ ..++..+++.++++++|++.++|+++
T Consensus 191 sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~~~~G~~~v~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~ 269 (517)
T 3r44_A 191 THESVHSAASSWASTIDVRYRDRLLLPLPMFHVAALTTVIFSAMRGVTLISMP-QFDATKVWSLIVEERVCIGGAVPAIL 269 (517)
T ss_dssp EHHHHHHHHHHHHHHSCCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECS-SCCHHHHHHHHHHTTCCEEEECHHHH
T ss_pred eHHHHHHHHHHHHHhcCCCCCCEEEEeCchHHHHHHHHHHHHHhcCeEEEEeC-CCCHHHHHHHHHHhCCeEEEeHHHHH
Confidence 99999999988888889999999999999999999987555555999999876 57889999999999999999999999
Q ss_pred HHHHccCCCCCCCcCceeEEEeecCCCCchhhHHHHHhhCCCCeeeecCCccccceecccCCC-CCCcccccccccCCcc
Q 010344 241 KAWKNTNCLQGLDWTKIRSFASTGETSNVDDDLWLASKAYYKPIIECCGGTELASSYIQGSML-QPQAFGAFSTATMTTG 319 (512)
Q Consensus 241 ~~l~~~~~~~~~~l~~l~~i~~~G~~l~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~-~~~~~~~~G~p~~~~~ 319 (512)
..|.+.......+++++|.+++|||++++++.+.+.+. ++++++.||+||+++..+..... .....+++|.|.++++
T Consensus 270 ~~l~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~--~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~G~~~~~~~ 347 (517)
T 3r44_A 270 NFMRQVPEFAELDAPDFRYFITGGAPMPEALIKIYAAK--NIEVVQGYALTESCGGGTLLLSEDALRKAGSAGRATMFTD 347 (517)
T ss_dssp HHHHHSHHHHHCCCTTCCEEEECSSCCCHHHHHHHHHT--TCEEEEEEECGGGTTCEEEECGGGTTTTTTCCBEECTTEE
T ss_pred HHHHhCcccccCCCCcccEEEECCCCCCHHHHHHHHhc--CCcEEEeecccccccceeecCCccccccCCCCCcCCCCeE
Confidence 99987765556678999999999999999999998876 78999999999998765443322 2445688999999999
Q ss_pred EEEeCCCCCCCCCCCCccccccc-ccccccccccccccCcceeEEecCCcccCceeeeecceEEEeCCCeEEEEeccCce
Q 010344 320 FVILDELGVPYPDDQPCVGEVGL-FPLYLGATDRLLNADHEEVYFSGMPIYKGMHLRRHGDIIKRTVGGYIIVQGRADDT 398 (512)
Q Consensus 320 ~~i~d~~~~~~~~g~~~~Gel~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~i~gR~~d~ 398 (512)
++|+|+++.+++.|. |||++ ++..+.+| +.+++.+...| .++||+|||+|++++||+++++||.||+
T Consensus 348 ~~i~d~~~~~~~~g~---GEl~v~g~~v~~GY--~~~p~~t~~~f-------~~g~~~TGDl~~~~~dG~l~~~GR~dd~ 415 (517)
T 3r44_A 348 VAVRGDDGVIREHGE---GEVVIKSDILLKEY--WNRPEATRDAF-------DNGWFRTGDIGEIDDEGYLYIKDRLKDM 415 (517)
T ss_dssp EEEECTTSCEESSEE---EEEEEEETTSCSEE--TTCHHHHHHTE-------ETTEEEEEEEEEECTTSCEEEEECGGGC
T ss_pred EEEECCCCCCCCCCC---eEEEEeCcchhhhh--CCChhhhHhhh-------cCCCEecceeEEEcCCeeEEEecCCcCE
Confidence 999999999999884 99999 55555432 22344444334 2479999999999999999999999999
Q ss_pred eeecceecchHHHHHhhhcCCcceeeeeEEeeCCCCCCCceEEEEEEecCCCCCCcHHHHHHHHHHHHHhccCCccceee
Q 010344 399 MNLGGIKTSSVEIERVCDGADESILETAAISVSPAGGGPEVLVICVVLKKGFTSQPVDKLKMIFSKAIQRNLNPLFKVSL 478 (512)
Q Consensus 399 i~~~G~~v~~~~iE~~l~~~~~~v~~~~v~~~~~~~~~~~~~~a~v~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~p~~ 478 (512)
||++|++|+|.|||++|. +||+|.+++|++.+++..+ +.+.++| +.++.. .+.+++.+++ +++|+.|++|+.
T Consensus 416 ik~~G~~v~p~eIE~~l~-~~p~V~~~~Vv~~~~~~~g-~~~~a~v-~~~~~~-~~~~~l~~~l----~~~L~~~~~P~~ 487 (517)
T 3r44_A 416 IISGGENVYPAEIESVII-GVPGVSEVAVIGLPDEKWG-EIAAAIV-VADQNE-VSEQQIVEYC----GTRLARYKLPKK 487 (517)
T ss_dssp EEETTEEECHHHHHHHHT-TSTTEEEEEEEEEEETTTE-EEEEEEE-EECTTT-CCHHHHHHHH----HHHSCGGGSCSE
T ss_pred EEECCEEECHHHHHHHHH-hCCCEeEEEEEeccccccC-ceEEEEE-ECCCCC-CCHHHHHHHH----HHhCCCCCCCCE
Confidence 999999999999999998 8999999999999998887 7888887 555444 5665555554 578899999999
Q ss_pred EEEecCCCCCCCchHHHHHHHHHHHhhhh
Q 010344 479 VKIVLEFPRTASNKLLRRVLKDQLKHELS 507 (512)
Q Consensus 479 i~~~~~iP~t~~GKi~r~~l~~~~~~~~~ 507 (512)
|+++++||+|++||++|++|++++.+++.
T Consensus 488 i~~v~~lP~t~~GKi~R~~L~~~~~~~~~ 516 (517)
T 3r44_A 488 VIFAEAIPRNPTGKILKTVLREQYSATVP 516 (517)
T ss_dssp EEECSCCCBCTTCCBCHHHHHHHHGGGCC
T ss_pred EEEECCCCCCCCcCccHHHHHHHHHhhcc
Confidence 99999999999999999999999988764
No 12
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A
Probab=100.00 E-value=8.6e-73 Score=581.74 Aligned_cols=479 Identities=17% Similarity=0.173 Sum_probs=290.6
Q ss_pred cHHHHHHHHhcc-CCCCCEEEEEcCCCHHHHHHHHHHHHhcceEeecCCCcCHHHHHHHHHhcCccEEEeccchhccCcc
Q 010344 2 SYRLVANALDTM-FSKGDAIAIDMPMTVHAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRK 80 (512)
Q Consensus 2 ~~~~~a~~L~~~-i~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~iv~~~~~~~~~~~ 80 (512)
.++++|++|++. +++||+|+++++|++++++++|||+++|++++|++|.++.+++.+++++++++++|+++...
T Consensus 59 ~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~----- 133 (550)
T 3rix_A 59 MSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGL----- 133 (550)
T ss_dssp HHHHHHHHHHHHTCCTTCEEEEECSSCTTTHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGH-----
T ss_pred HHHHHHHHHHHhCCCCCCEEEEEcCCcccHHHHHHHHHHcCCEEeecCCcCCHHHHHHHHHhcCCeEEEEcHHHH-----
Confidence 378999999999 99999999999999999999999999999999999999999999999999999999998532
Q ss_pred ccchhhHHhcCCCceEEeeccCCcccccccccCccHHHHhhccCCCCCC--CCCCCCCCCCCCeEEEEecCCCCCCCceE
Q 010344 81 FPLYSKVAEAGPLKAVVLPVIGDDVGIQLRQQDVSWKDFLSCVDYHPGP--KYYPPVYRPVDSVINILFSSGTTGEPKAI 158 (512)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~~TSGtTG~pK~v 158 (512)
+.+..+....+....++...... ...+..++.++.......... ...+.....++++++++|||||||.||+|
T Consensus 134 -~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV 208 (550)
T 3rix_A 134 -QKILNVQKKLPIIQKIIIMDSKT----DYQGFQSMYTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGV 208 (550)
T ss_dssp -HHHHHHHHHCTTCCEEEETTCSS----CBTTBCBHHHHHHHHCCTTCCTTTCCCCCCCTTTSEEEEEEC-----CCCEE
T ss_pred -HHHHHHHhhCCCcceEEEEcCCc----cccCcccHHHHhhccccccccccccCCCCCCCCCCEEEEEECCCcccCcchh
Confidence 33444444444332222221111 112345667766544331111 11112223457899999999999999999
Q ss_pred EecCchhHHHHHHhhcc---ccccCCcEEEecCCccchhhhHHHHhhhccCceEEEecCCCchhhHHHHHHhcCceEEec
Q 010344 159 PWTQLSPIRCAAEAWGH---IDMKVGDVYCWPTNLGWVMGPIILFSSFLSGAALALYHGSPLERSFGKFVQDSGVSVLGT 235 (512)
Q Consensus 159 ~~s~~~~~~~~~~~~~~---~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~l~~~~~t~l~~ 235 (512)
+++|+++...+...... +++.+++++++.+|++|.+++..++.+++.|+++++.+ ..+++.+++.|+++++|++++
T Consensus 209 ~~th~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~~~~ 287 (550)
T 3rix_A 209 ALPHRTACVRFSHARDPIFGNQIIPDTAILSVVPFHHGFGMFTTLGYLICGFRVVLMY-RFEEELFLRSLQDYKIQSALL 287 (550)
T ss_dssp EEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECS-SCCHHHHHHHHHHTTCSEEEE
T ss_pred hhhHHHHHHHHHHhhhhhccccCCCCcEEEEechHHHHHHHHHHHHHHHcCCEEEEeC-CCCHHHHHHHHHHcCCeEEEe
Confidence 99999998887776654 46789999999999999999988889999999999975 567899999999999999999
Q ss_pred chHHHHHHHccCCCCCCCcCceeEEEeecCCCCchhhHHHHHhhCCCCeeeecCCccccceecccCCCCCCccccccccc
Q 010344 236 VPSLVKAWKNTNCLQGLDWTKIRSFASTGETSNVDDDLWLASKAYYKPIIECCGGTELASSYIQGSMLQPQAFGAFSTAT 315 (512)
Q Consensus 236 ~P~~~~~l~~~~~~~~~~l~~l~~i~~~G~~l~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~G~p~ 315 (512)
+|+++..|++.......+++++|.+++||+++++++.+.+.+.++...+++.||+||+++.++.... .....+++|+|+
T Consensus 288 ~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~-~~~~~~~vG~~~ 366 (550)
T 3rix_A 288 VPTLFSFFAKSTLIDKYDLSNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILITPE-GDDKPGAVGKVV 366 (550)
T ss_dssp CHHHHHHHHHCCGGGGSCCTTCCEEEECSSCCCHHHHHHHHHHTTCSCCEEEEECGGGSSEEEECCT-TCCCTTEEEEEC
T ss_pred CcHHHHHHHhCccccccCcccccEEEEecCCCCHHHHHHHHHHcCCCccccccCcCccccceecCCC-CCCCCCCccccc
Confidence 9999999998876677789999999999999999999999998855569999999999987665443 345668999999
Q ss_pred CCccEEEeC-CCCCCCCCCCCccccccc-ccccccccccccccCcceeEEecCCcccCceeeeecceEEEeCCCeEEEEe
Q 010344 316 MTTGFVILD-ELGVPYPDDQPCVGEVGL-FPLYLGATDRLLNADHEEVYFSGMPIYKGMHLRRHGDIIKRTVGGYIIVQG 393 (512)
Q Consensus 316 ~~~~~~i~d-~~~~~~~~g~~~~Gel~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~i~g 393 (512)
++++++|+| ++|++++.|+ .|||+| ++..+.+| +.+++.+...| +.++||+|||+|++|+||+++++|
T Consensus 367 ~~~~~~i~d~~~~~~~~~g~--~GEl~v~g~~v~~GY--~~~~~~t~~~~------~~~g~~~TGDl~~~~~dG~l~~~G 436 (550)
T 3rix_A 367 PFFEAKVVDLDTGKTLGVNQ--RGELCVRGPMIMSGY--VNNPEATNALI------DKDGWLHSGDIAYWDEDEHFFIVD 436 (550)
T ss_dssp TTCEEEEECTTTCCBCCTTC--CEEEEEESTTSCSEE--TTCHHHHHHHB------CTTSCEEEEEEEEECTTCCEEEC-
T ss_pred CCcEEEEEeCCCCcCCCCCC--CeEEEEeCCCcchhh--cCChhhhhhhc------CCCCCeecCcEEEEeCCceEEEEe
Confidence 999999999 6789999999 699999 55555432 22333333333 356899999999999999999999
Q ss_pred ccCceeeecceecchHHHHHhhhcCCcceeeeeEEeeCCCCCCCceEEEEEEecCCCCCCcHHHHHHHHHHHHHhccCCc
Q 010344 394 RADDTMNLGGIKTSSVEIERVCDGADESILETAAISVSPAGGGPEVLVICVVLKKGFTSQPVDKLKMIFSKAIQRNLNPL 473 (512)
Q Consensus 394 R~~d~i~~~G~~v~~~~iE~~l~~~~~~v~~~~v~~~~~~~~~~~~~~a~v~~~~~~~~~~~~~l~~~~~~~~~~~l~~~ 473 (512)
|.||+||++|++|+|.+||++|. +||+|.+++|++.+++..+ +.++++|+++++.. .+.+++.++++ ++|++|
T Consensus 437 R~dd~ik~~G~~v~p~eIE~~l~-~~p~V~~a~vv~~~~~~~g-~~~~a~vv~~~~~~-~~~~~l~~~~~----~~l~~~ 509 (550)
T 3rix_A 437 RLKSLIKYKGYQVAPAELESILL-QHPNIFDAGVAGLPDDDAG-ELPAAVVVLEHGKT-MTEKEIVDYVA----SQVTTA 509 (550)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cchheeEECCEEECHHHHHHHHH-hCCCcceEEEEEeecCCCC-ceEEEEEEecCCCC-CCHHHHHHHHH----Hhcccc
Confidence 99999999999999999999998 8999999999999998888 89999999987654 55556655554 567777
Q ss_pred cce-eeEEEecCCCCCCCchHHHHHHHHHHHhhhhcc
Q 010344 474 FKV-SLVKIVLEFPRTASNKLLRRVLKDQLKHELSVR 509 (512)
Q Consensus 474 ~~p-~~i~~~~~iP~t~~GKi~r~~l~~~~~~~~~~~ 509 (512)
+.| ..|+++++||+|++||++|++|++++.+..+..
T Consensus 510 ~~~~~~i~~v~~lP~t~~GKi~r~~L~~~~~~~~~~~ 546 (550)
T 3rix_A 510 KKLRGGVVFVDEVPKGLTGKLDARKIREILIKAKKGG 546 (550)
T ss_dssp -------------------------------------
T ss_pred cccCCceEEEeecCCCCCcceeHHHHHHHHHhhcccc
Confidence 666 479999999999999999999999998755443
No 13
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*
Probab=100.00 E-value=1.7e-72 Score=578.06 Aligned_cols=467 Identities=20% Similarity=0.206 Sum_probs=344.7
Q ss_pred cHHHHHHHHhcc-CCCCCEEEEEcCCCHHHHHHHHHHHHhcceEeecCCCcCHHHHHHHHHhcCccEEEeccchhccCcc
Q 010344 2 SYRLVANALDTM-FSKGDAIAIDMPMTVHAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRK 80 (512)
Q Consensus 2 ~~~~~a~~L~~~-i~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~iv~~~~~~~~~~~ 80 (512)
.++++|++|++. +++||+|+++++|++++++++|||+++|++++|++|.++.+++.+++++++++++|+++...
T Consensus 56 ~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~----- 130 (541)
T 1v25_A 56 RARRLMGGLRALGVGVGDRVATLGFNHFRHLEAYFAVPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLL----- 130 (541)
T ss_dssp HHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGH-----
T ss_pred HHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHhcCcEEEecCcccCHHHHHHHHHhCCCcEEEEChhHH-----
Confidence 378999999999 99999999999999999999999999999999999999999999999999999999997532
Q ss_pred ccchhhHHhcCCCceEEeeccCCcccccccccCccHHHHhhccCCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEe
Q 010344 81 FPLYSKVAEAGPLKAVVLPVIGDDVGIQLRQQDVSWKDFLSCVDYHPGPKYYPPVYRPVDSVINILFSSGTTGEPKAIPW 160 (512)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~ 160 (512)
+.+..+....+....++...... ..+...|.+++..... .....++++++++|||||||.||+|++
T Consensus 131 -~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~--------~~~~~~~~~a~i~~TSGTTG~PKgV~~ 196 (541)
T 1v25_A 131 -PLVEAIRGELKTVQHFVVMDEKA-----PEGYLAYEEALGEEAD--------PVRVPERAACGMAYTTGTTGLPKGVVY 196 (541)
T ss_dssp -HHHHHHGGGCSSCCEEEESSSCC-----CTTCEEHHHHCCSCCC--------CCCCCTTSEEEEEEECSSSSSCEEEEE
T ss_pred -HHHHHHHhhCCCccEEEEecCCC-----CcccccHHHHhhccCC--------cccCCCCCcEEEEECCCCCCCCcEeee
Confidence 23333333333221122111110 0123356665543221 123456889999999999999999999
Q ss_pred cCchhHHHHHHh--hccccccCCcEEEecCCccchhhhHHHHhhhccCceEEEecCCCchhhHHHHHHhcCceEEecchH
Q 010344 161 TQLSPIRCAAEA--WGHIDMKVGDVYCWPTNLGWVMGPIILFSSFLSGAALALYHGSPLERSFGKFVQDSGVSVLGTVPS 238 (512)
Q Consensus 161 s~~~~~~~~~~~--~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~l~~~~~t~l~~~P~ 238 (512)
||+++..+.... ...+++.++|++++.+|++|.+++..++.+++.|+++++.+...++..+++.++++++|+++++|+
T Consensus 197 sh~~l~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~ 276 (541)
T 1v25_A 197 SHRALVLHSLAASLVDGTALSEKDVVLPVVPMFHVNAWCLPYAATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPT 276 (541)
T ss_dssp EHHHHHHHHHHTTSTTTTCCCTTCEEEECSCTTSHHHHTHHHHHHHHTCEEEECTTCCSHHHHHHHHHHTTCCEEEECHH
T ss_pred ehHHHHHHHhhhhhcccccCCCCCEEEEeccchhhhHHHHHHHHHhcCceEEeeCCCCCHHHHHHHHHhcCeeEEecchH
Confidence 999998776653 345678899999999999999998778889999999999775568899999999999999999999
Q ss_pred HHHHHHccCCCCCCCcCceeEEEeecCCCCchhhHHHHHhhCCCCeeeecCCccccceecccCCCC----------CCcc
Q 010344 239 LVKAWKNTNCLQGLDWTKIRSFASTGETSNVDDDLWLASKAYYKPIIECCGGTELASSYIQGSMLQ----------PQAF 308 (512)
Q Consensus 239 ~~~~l~~~~~~~~~~l~~l~~i~~~G~~l~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~----------~~~~ 308 (512)
++..|++.......+++++|.+++||+++++++.+.+ +.+ ++++++.||+||++...+...... ....
T Consensus 277 ~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~-~~~-g~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (541)
T 1v25_A 277 VWLALADYLESTGHRLKTLRRLVVGGSAAPRSLIARF-ERM-GVEVRQGYGLTETSPVVVQNFVKSHLESLSEEEKLTLK 354 (541)
T ss_dssp HHHHHHHHHHHHTCCCSSCCEEEECSSCCCHHHHHHH-HHT-TCEEEEEEECGGGSSEEEECCCCGGGTTSCHHHHHHHH
T ss_pred HHHHHHhhhhccCCcchhccEEEECCCCCCHHHHHHH-HHh-CCceeecccccccccceecccccccccccCcccccccc
Confidence 9999987654445678999999999999999999998 555 789999999999987665543221 0234
Q ss_pred cccccccCCccEEEeCCCCCCCCCC--CCccccccc-ccccccccccccccCcceeEEecCCcccCceeeeecceEEEeC
Q 010344 309 GAFSTATMTTGFVILDELGVPYPDD--QPCVGEVGL-FPLYLGATDRLLNADHEEVYFSGMPIYKGMHLRRHGDIIKRTV 385 (512)
Q Consensus 309 ~~~G~p~~~~~~~i~d~~~~~~~~g--~~~~Gel~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~ 385 (512)
+++|.|+++++++|+|++|++++.+ + .|||++ ++..+.+| +.+++.+...| ..++||+|||+|++|+
T Consensus 355 ~~~G~p~~~~~~~i~d~~g~~~~~~~~~--~GEl~v~g~~v~~GY--~~~p~~t~~~f------~~~g~~~TGDlg~~d~ 424 (541)
T 1v25_A 355 AKTGLPIPLVRLRVADEEGRPVPKDGKA--LGEVQLKGPWITGGY--YGNEEATRSAL------TPDGFFRTGDIAVWDE 424 (541)
T ss_dssp TSCBEECTTCEEEEECTTSCBCCSSSCC--CEEEEEESTTSBSSC--BTCHHHHHTTB------CTTSCEEEEEEEEECT
T ss_pred CCCCCcCCCcEEEEECCCCCCCCCCCCc--ceEEEEeCcchhccc--cCChhhhhhhc------cCCCCeEcCCEEEEcC
Confidence 7899999999999999999999853 4 699999 55555432 22333333333 2357999999999999
Q ss_pred CCeEEEEeccCceeeecceecchHHHHHhhhcCCcceeeeeEEeeCCCCCCCceEEEEEEecCCCCCCcHHHHHHHHHHH
Q 010344 386 GGYIIVQGRADDTMNLGGIKTSSVEIERVCDGADESILETAAISVSPAGGGPEVLVICVVLKKGFTSQPVDKLKMIFSKA 465 (512)
Q Consensus 386 ~g~l~i~gR~~d~i~~~G~~v~~~~iE~~l~~~~~~v~~~~v~~~~~~~~~~~~~~a~v~~~~~~~~~~~~~l~~~~~~~ 465 (512)
||+++++||+||+||++|++|+|.+||++|. .||+|.+++|++.+++..+ +.++++|+++ +.. .+.+++.++
T Consensus 425 dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~-~~p~V~~a~Vv~~~~~~~~-~~~~a~vv~~-~~~-~~~~~l~~~---- 496 (541)
T 1v25_A 425 EGYVEIKDRLKDLIKSGGEWISSVDLENALM-GHPKVKEAAVVAIPHPKWQ-ERPLAVVVPR-GEK-PTPEELNEH---- 496 (541)
T ss_dssp TCCEEEEEESSCEEEETTEEEEHHHHHCC-----------CEEEEECSSSS-EEEEECC---------------------
T ss_pred CceEEEeecccceeeeCCEEECHHHHHHHHH-hCCCceEEEEEEecCCCcC-ceEEEEEEEC-CCC-CCHHHHHHH----
Confidence 9999999999999999999999999999998 8999999999999998888 8999999886 322 444455444
Q ss_pred HHh-ccCCccceeeEEEecCCCCCCCchHHHHHHHHHHHhhhh
Q 010344 466 IQR-NLNPLFKVSLVKIVLEFPRTASNKLLRRVLKDQLKHELS 507 (512)
Q Consensus 466 ~~~-~l~~~~~p~~i~~~~~iP~t~~GKi~r~~l~~~~~~~~~ 507 (512)
+.+ +|+.|++|+.|+++++||+|++||++|++|++++.+.++
T Consensus 497 ~~~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~~~~ 539 (541)
T 1v25_A 497 LLKAGFAKWQLPDAYVFAEEIPRTSAGKFLKRALREQYKNYYG 539 (541)
T ss_dssp ----CCCTTTSCSBC--------------CCTTHHHHSTTSSC
T ss_pred HHhccCccccCCcEEEEeCCCCCCCccCeeHHHHHHHHHHhhC
Confidence 446 899999999999999999999999999999999987654
No 14
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Probab=100.00 E-value=6.9e-71 Score=561.81 Aligned_cols=452 Identities=19% Similarity=0.167 Sum_probs=364.4
Q ss_pred cHHHHHHHHhcc-CCCCCEEEEEcCCCHHHHHHHHHHHHhcceEeecCCCcCHHHHHHHHHhcCccEEEe--ccchhccC
Q 010344 2 SYRLVANALDTM-FSKGDAIAIDMPMTVHAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFT--QDFILRGG 78 (512)
Q Consensus 2 ~~~~~a~~L~~~-i~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~iv~--~~~~~~~~ 78 (512)
.++++|++|++. +++||+|+++++|++++++++|||+++|++++|++|.++.+++.+++++++++++|+ +...
T Consensus 38 ~~~~~A~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~---- 113 (504)
T 1t5h_X 38 RVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQV---- 113 (504)
T ss_dssp HHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHHTCEEEEECTTSCHHHHHHHHHHTTCSEEEECC--CH----
T ss_pred HHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEecCCccChHHHHHHHhhcCCcEEEEecchhh----
Confidence 378999999999 999999999999999999999999999999999999999999999999999999999 6532
Q ss_pred ccccchhhHHhcCCCceEEeeccCCcccccccccCccHHHHhhccCCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCceE
Q 010344 79 RKFPLYSKVAEAGPLKAVVLPVIGDDVGIQLRQQDVSWKDFLSCVDYHPGPKYYPPVYRPVDSVINILFSSGTTGEPKAI 158 (512)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v 158 (512)
...+........ ++ .+.++...................++++++++|||||||.||+|
T Consensus 114 -----~~~~~~~~~~~~-~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV 171 (504)
T 1t5h_X 114 -----ADAIFQSGSGAR-II----------------FLGDLVRDGEPYSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAA 171 (504)
T ss_dssp -----HHHHHHHCCCCE-EE----------------EGGGTEETTEECCCSCCCCCCCCCTTSEEEEEECCC---CCCEE
T ss_pred -----hhhhhhccccce-eE----------------EecchhhcCcccccCCccCCCCCCCCCeEEEEeCCCCCCCCCEE
Confidence 111211111111 11 12222221100000011111334578999999999999999999
Q ss_pred EecCchhHHHHHHhhccccc--cCCcEEEecCCccchhhhH-HHHhhhccCceEEEecCCCchhhHHHHHHhcCceEEec
Q 010344 159 PWTQLSPIRCAAEAWGHIDM--KVGDVYCWPTNLGWVMGPI-ILFSSFLSGAALALYHGSPLERSFGKFVQDSGVSVLGT 235 (512)
Q Consensus 159 ~~s~~~~~~~~~~~~~~~~~--~~~~~~~~~~p~~~~~~~~-~~~~~l~~G~~~~~~~~~~~~~~~~~~l~~~~~t~l~~ 235 (512)
+++|+++.+.+......+++ .+++++++.+|++|..++. .++.++..|+++++.+ ..++..+++.|+++++|++++
T Consensus 172 ~~sh~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~i~~~~~t~~~~ 250 (504)
T 1t5h_X 172 IIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVVE-EFRPVDALQLVQQEQVTSLFA 250 (504)
T ss_dssp EEEGGGHHHHHHHHHHTTCCCSSTTCEEEECSCTTSHHHHTTTHHHHHHTTCEEEECS-SCCHHHHHHHHHHHTCCEEEC
T ss_pred EecHHHHHHHHHHHHHhhCCCCCCCceEEeecchhhcchHHHHHHHHHHcCceEEeCC-CCCHHHHHHHHHHhCCeEEEe
Confidence 99999999888877767777 7899999999999999984 4889999999999976 467899999999999999999
Q ss_pred chHHHHHHHccC-C-CCCCCcCceeEEEeecCCCCchhhHHHHHhhCCCCeeeecCCccccceecccCCCCCCccccccc
Q 010344 236 VPSLVKAWKNTN-C-LQGLDWTKIRSFASTGETSNVDDDLWLASKAYYKPIIECCGGTELASSYIQGSMLQPQAFGAFST 313 (512)
Q Consensus 236 ~P~~~~~l~~~~-~-~~~~~l~~l~~i~~~G~~l~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~G~ 313 (512)
+|+++..|++.. . ....+++++|.+++||+++++++.+.+++.+ +.++++.||+||++...... ....+++|.
T Consensus 251 ~P~~~~~l~~~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~-~~~~~~~YG~TE~~~~~~~~----~~~~~~~g~ 325 (504)
T 1t5h_X 251 TPTHLDALAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHL-PGEKVNIYGTTEAMNSLYMR----QPKTGTEMA 325 (504)
T ss_dssp CHHHHHHHHHHHCCTTCCCCCTTCCEEEECCTTCCHHHHHHHHHHC-CSEEEEEEEETTTEEEEEEE----SCSSSSEEB
T ss_pred ChHHHHHHHhhhccccccccCccccEEEEcCCcCCHHHHHHHHHhc-Ccceeeeecccccccccccc----CCCCCcccc
Confidence 999999998764 2 2445789999999999999999999999887 57899999999994332221 234578999
Q ss_pred ccCCccEEEeCCCC---CCCCCCCCcccccccc-c-ccccccccccccCcceeEEecCCcccCceeeeecceEEEeCCCe
Q 010344 314 ATMTTGFVILDELG---VPYPDDQPCVGEVGLF-P-LYLGATDRLLNADHEEVYFSGMPIYKGMHLRRHGDIIKRTVGGY 388 (512)
Q Consensus 314 p~~~~~~~i~d~~~---~~~~~g~~~~Gel~v~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~ 388 (512)
|.++++++|+|+++ ++++.|+ .|||+++ . ..+.+ |+.+++.+...|. ++||+|||+|++++||+
T Consensus 326 p~~~~~~~i~~~~~~~~~~~~~g~--~GEl~v~gg~~~~~G--Y~~~~~~t~~~f~-------~g~~~TGDlg~~~~dG~ 394 (504)
T 1t5h_X 326 PGFFSEVRIVRIGGGVDEIVANGE--EGELIVAASDSAFVG--YLNQPQATAEKLQ-------DGWYRTSDVAVWTPEGT 394 (504)
T ss_dssp CCTTCCEEEECTTSCTTCBCCTTC--CEEEEEECCTTSCCC--BTTCHHHHHHHEE-------TTEEEEEEEEEECTTSC
T ss_pred CCCCCceeEEeccCCCCCcCCCCC--cceEEEeCCceeece--ecCCchhhhhhhc-------CCccccCcEEEECCCce
Confidence 99999999999877 8999999 6999995 3 33222 2223444443342 46999999999999999
Q ss_pred EEEEeccCceeeecceecchHHHHHhhhcCCcceeeeeEEeeCCCCCCCceEEEEEEecCCCCCCcHHHHHHHHHHHHHh
Q 010344 389 IIVQGRADDTMNLGGIKTSSVEIERVCDGADESILETAAISVSPAGGGPEVLVICVVLKKGFTSQPVDKLKMIFSKAIQR 468 (512)
Q Consensus 389 l~i~gR~~d~i~~~G~~v~~~~iE~~l~~~~~~v~~~~v~~~~~~~~~~~~~~a~v~~~~~~~~~~~~~l~~~~~~~~~~ 468 (512)
++++||.||+||++|++|+|.+||++|. +||+|.+++|++.+++..+ +.++|+|+++++.. .+.+++.+++ ++
T Consensus 395 l~~~GR~dd~ik~~G~~v~p~eIE~~l~-~~p~V~~a~Vv~~~~~~~g-~~~~a~vv~~~~~~-~~~~~l~~~~----~~ 467 (504)
T 1t5h_X 395 VRILGRVDDMIISGGENIHPSEIERVLG-TAPGVTEVVVIGLADQRWG-QSVTACVVPRLGET-LSADALDTFC----RS 467 (504)
T ss_dssp EEEEEEGGGCEEETTEEECHHHHHHHHT-TSTTEEEEEEEEEECSSSS-EEEEEEEEECTTCC-CCHHHHHHHH----HT
T ss_pred EEEeCcccCEEEECCEEECHHHHHHHHH-hCCCcceEEEEEeecCCCC-cEEEEEEEecCCcC-cCHHHHHHHH----hh
Confidence 9999999999999999999999999998 9999999999999998888 89999999987654 5666655554 46
Q ss_pred -ccCCccceeeEEEecCCCCCCCchHHHHHHHHHHH
Q 010344 469 -NLNPLFKVSLVKIVLEFPRTASNKLLRRVLKDQLK 503 (512)
Q Consensus 469 -~l~~~~~p~~i~~~~~iP~t~~GKi~r~~l~~~~~ 503 (512)
+|+.|++|+.|+++++||+|++||++|++|+++++
T Consensus 468 ~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~ 503 (504)
T 1t5h_X 468 SELADFKRPKRYFILDQLPKNALNKVLRRQLVQQVS 503 (504)
T ss_dssp SSCCGGGSCSEEEECSCCCBCTTSCBCHHHHHHHHC
T ss_pred ccCcccccceEEEEhhhCCCCCCCCEeHHHHHHHhc
Confidence 89999999999999999999999999999999875
No 15
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Probab=100.00 E-value=1.5e-70 Score=565.88 Aligned_cols=469 Identities=22% Similarity=0.267 Sum_probs=381.0
Q ss_pred cHHHHHHHHhcc--CCCCCEEEEEcCCCHHHHHHHHHHHHhcceEeecCCCcCHHHHHHHHHhcCccEEEeccchhccCc
Q 010344 2 SYRLVANALDTM--FSKGDAIAIDMPMTVHAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGR 79 (512)
Q Consensus 2 ~~~~~a~~L~~~--i~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~iv~~~~~~~~~~ 79 (512)
.++++|++|++. +++||+|+++++|++++++++|||+++|++++|+++.++.+++.+++++++++++|+++...
T Consensus 82 ~~~~lA~~L~~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~---- 157 (570)
T 3c5e_A 82 NSQQAANVLSGACGLQRGDRVAVVLPRVPEWWLVILGCIRAGLIFMPGTIQMKSTDILYRLQMSKAKAIVAGDEVI---- 157 (570)
T ss_dssp HHHHHHHHHHTTTCCCTTCEEEEECCSCHHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEEEETTTH----
T ss_pred HHHHHHHHHHHccCCCCCCEEEEEcCCCHHHHHHHHHHHHcCeEEEecCCCCCHHHHHHHHHhcCCeEEEechHHH----
Confidence 378999999986 99999999999999999999999999999999999999999999999999999999987432
Q ss_pred cccchhhHHhcCCCceEEeeccCCcccccccccCccHHHHhhccCCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCceEE
Q 010344 80 KFPLYSKVAEAGPLKAVVLPVIGDDVGIQLRQQDVSWKDFLSCVDYHPGPKYYPPVYRPVDSVINILFSSGTTGEPKAIP 159 (512)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~ 159 (512)
+.+..+....+....++...... ..+...+.+++..... ........++++++|+|||||||.||+|+
T Consensus 158 --~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~-----~~~~~~~~~~d~a~i~~TSGTTG~PKgV~ 225 (570)
T 3c5e_A 158 --QEVDTVASECPSLRIKLLVSEKS-----CDGWLNFKKLLNEAST-----THHCVETGSQEASAIYFTSGTSGLPKMAE 225 (570)
T ss_dssp --HHHHHHGGGCTTCCEEEEESSSC-----CTTSEEHHHHHHHSCS-----CCCCCCCBTTSEEEEEECCCSSSSCCEEE
T ss_pred --HHHHHHhhcCCceeEEEEecccC-----ccccccHHHHhhcccc-----cccccCCCCCCcEEEEECCCCCCCCCEEE
Confidence 23333333333221111111100 1123456666654332 11223346789999999999999999999
Q ss_pred ecCchhHH--HHHHhhccccccCCcEEEecCCccchhhhH-HHHhhhccCceEEEecC-CCchhhHHHHHHhcCceEEec
Q 010344 160 WTQLSPIR--CAAEAWGHIDMKVGDVYCWPTNLGWVMGPI-ILFSSFLSGAALALYHG-SPLERSFGKFVQDSGVSVLGT 235 (512)
Q Consensus 160 ~s~~~~~~--~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~-~~~~~l~~G~~~~~~~~-~~~~~~~~~~l~~~~~t~l~~ 235 (512)
++|+ ++. ..... ..+++.++|++++..|++|..++. .++.++..|+++++.+. ..++..+++.|+++++|++++
T Consensus 226 ~sh~-~~~~~~~~~~-~~~~~~~~d~~~~~~p~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~ 303 (570)
T 3c5e_A 226 HSYS-SLGLKAKMDA-GWTGLQASDIMWTISDTGWILNILCSLMEPWALGACTFVHLLPKFDPLVILKTLSSYPIKSMMG 303 (570)
T ss_dssp EEHH-HHHHHHHHHT-TTTSCCTTCEEEECCCTTSHHHHHHTTHHHHHHTCEEEEECCSSCCHHHHHHHHHHSCCCEEEE
T ss_pred echH-HHHhhhhhhh-hhcCCCCCceEEEcCchHHHHHHHHHHHHHHHhCceEEEecCCCCCHHHHHHHHHHhCCeEEec
Confidence 9999 554 33343 667889999999999999999987 48899999999999764 567899999999999999999
Q ss_pred chHHHHHHHccCCCCCCCcCceeEEEeecCCCCchhhHHHHHhhCCCCeeeecCCccccceecccCCCCCCccccccccc
Q 010344 236 VPSLVKAWKNTNCLQGLDWTKIRSFASTGETSNVDDDLWLASKAYYKPIIECCGGTELASSYIQGSMLQPQAFGAFSTAT 315 (512)
Q Consensus 236 ~P~~~~~l~~~~~~~~~~l~~l~~i~~~G~~l~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~G~p~ 315 (512)
+|+++..|++.. ....+++++|.+++||+++++++.+.+.+.+ ++++++.||+||++..++... ......+++|.|+
T Consensus 304 ~P~~~~~l~~~~-~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~-g~~i~~~YG~TE~~~~~~~~~-~~~~~~~~vG~p~ 380 (570)
T 3c5e_A 304 APIVYRMLLQQD-LSSYKFPHLQNCVTVGESLLPETLENWRAQT-GLDIRESYGQTETGLTCMVSK-TMKIKPGYMGTAA 380 (570)
T ss_dssp CHHHHHHHHTSC-TTTCCCTTCCEEEEESSCCCHHHHHHHHHHH-SCCCEEEEEETTTEEEEECCT-TSCCCTTCCCEEC
T ss_pred cHHHHHHHHhcc-ccccccccceEEEEcCCcCCHHHHHHHHHHh-CCchhhccchhhcccceecCc-ccccCCCcccccC
Confidence 999999998763 3455788999999999999999999999888 789999999999987554433 2234568999999
Q ss_pred CCccEEEeCCCCCCCCCCCCcccccccc------cccccccccccccCcceeEEecCCcccCceeeeecceEEEeCCCeE
Q 010344 316 MTTGFVILDELGVPYPDDQPCVGEVGLF------PLYLGATDRLLNADHEEVYFSGMPIYKGMHLRRHGDIIKRTVGGYI 389 (512)
Q Consensus 316 ~~~~~~i~d~~~~~~~~g~~~~Gel~v~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l 389 (512)
++++++|+|++|++++.|+ .|||+++ +.++.+ |+.+++.+...|. ++||+|||+|++|+||++
T Consensus 381 ~~~~v~i~d~~g~~~~~G~--~GEl~v~~~~~~g~~v~~G--Y~~~~~~t~~~f~-------~~~~~TGDlg~~d~dG~l 449 (570)
T 3c5e_A 381 SCYDVQIIDDKGNVLPPGT--EGDIGIRVKPIRPIGIFSG--YVDNPDKTAANIR-------GDFWLLGDRGIKDEDGYF 449 (570)
T ss_dssp TTCCEEEECTTSCBCCTTC--CEEEEEECSSBCCTTCCCE--ETTCHHHHHHTEE-------TTEEEEEEEEEECTTSCE
T ss_pred CCceEEEECCCCCCCCCCC--CCeeEEeccCCCCchhhcc--ccCChhHhhhhhc-------CCccccceeEEEcCCceE
Confidence 9999999999999999999 6999995 222221 1223333333332 469999999999999999
Q ss_pred EEEeccCceeeecceecchHHHHHhhhcCCcceeeeeEEeeCCCCCCCceEEEEEEecCCCCCCcHHHHHHHHHHHHHhc
Q 010344 390 IVQGRADDTMNLGGIKTSSVEIERVCDGADESILETAAISVSPAGGGPEVLVICVVLKKGFTSQPVDKLKMIFSKAIQRN 469 (512)
Q Consensus 390 ~i~gR~~d~i~~~G~~v~~~~iE~~l~~~~~~v~~~~v~~~~~~~~~~~~~~a~v~~~~~~~~~~~~~l~~~~~~~~~~~ 469 (512)
+++||.||+||++|++|+|.+||++|. +||+|.+++|++.+++..+ +.++++|++.++......+.+.+.++++++++
T Consensus 450 ~~~GR~dd~Ik~~G~~V~p~eIE~~l~-~~p~V~~a~Vv~~~~~~~g-~~~~a~vv~~~~~~~~~~~~~~~~l~~~l~~~ 527 (570)
T 3c5e_A 450 QFMGRADDIINSSGYRIGPSEVENALM-EHPAVVETAVISSPDPVRG-EVVKAFVVLASQFLSHDPEQLTKELQQHVKSV 527 (570)
T ss_dssp EEEEEGGGCEEETTEEECHHHHHHHHH-TSTTEEEEEEEEEEETTTE-EEEEEEEEECGGGTTSCHHHHHHHHHHHHHHH
T ss_pred EEEecCCCEEEECCEEECHHHHHHHHH-hCCCcceEEEEeeeCCCCC-eEEEEEEEECCcccCcchHHHHHHHHHHHHhh
Confidence 999999999999999999999999998 8999999999999988888 89999999876542134456778888888899
Q ss_pred cCCccceeeEEEecCCCCCCCchHHHHHHHHHHHh
Q 010344 470 LNPLFKVSLVKIVLEFPRTASNKLLRRVLKDQLKH 504 (512)
Q Consensus 470 l~~~~~p~~i~~~~~iP~t~~GKi~r~~l~~~~~~ 504 (512)
|++|++|+.|+++++||+|++||++|++|++++.+
T Consensus 528 L~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~~~~ 562 (570)
T 3c5e_A 528 TAPYKYPRKIEFVLNLPKTVTGKIQRAKLRDKEWK 562 (570)
T ss_dssp SCGGGSCSEEEEESCCCBCTTCCBCHHHHHHHHTC
T ss_pred CccccCCcEEEEeccCCCCCCcCCcHHHHHHHHHh
Confidence 99999999999999999999999999999998764
No 16
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*
Probab=100.00 E-value=3.1e-71 Score=567.24 Aligned_cols=468 Identities=15% Similarity=0.134 Sum_probs=370.6
Q ss_pred cHHHHHHHHhcc-CCCCCEEEEEcCCCHHHHHHHHHHHHhcceEeecCCCcCHHHHHHHHHhcCccEEEeccchhccCcc
Q 010344 2 SYRLVANALDTM-FSKGDAIAIDMPMTVHAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRK 80 (512)
Q Consensus 2 ~~~~~a~~L~~~-i~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~iv~~~~~~~~~~~ 80 (512)
.++++|++|++. +++||+|+++++|++++++++|||+++|++++|+++.++.+++.+++++++++++|+++.....
T Consensus 38 ~~~~lA~~L~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~ii~~~~~~~~--- 114 (521)
T 3l8c_A 38 DSDSIAAFIDSLALLAKSPVLVFGAQTYDMLATFVALTKSGHAYIPVDVHSAPERILAIIEIAKPSLIIAIEEFPLT--- 114 (521)
T ss_dssp HHHHHHHHHHHTCCCTTCCEEEEECSSHHHHHHHHHHHHTTCCEEEEETTSCHHHHHHHHHHSCCSEEEESSCCCSC---
T ss_pred HHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEEecCccccHHHHHHHHHhCCCCEEEecCccccc---
Confidence 478999999999 9999999999999999999999999999999999999999999999999999999998753210
Q ss_pred ccchhhHHhcCCCceEEeeccCCcccccccccCccHHHHhhccCCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEe
Q 010344 81 FPLYSKVAEAGPLKAVVLPVIGDDVGIQLRQQDVSWKDFLSCVDYHPGPKYYPPVYRPVDSVINILFSSGTTGEPKAIPW 160 (512)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~ 160 (512)
... ..+ ..+.++...... ...........++++++++|||||||.||+|++
T Consensus 115 ---~~~--------~~~----------------~~~~~~~~~~~~--~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~ 165 (521)
T 3l8c_A 115 ---IEG--------ISL----------------VSLSEIESAKLA--EMPYERTHSVKGDDNYYIIFTSGTTGQPKGVQI 165 (521)
T ss_dssp ---CTT--------SEE----------------EEHHHHHHHHHH--TCCCCCSSCCCTTSEEEEEECCC---CCCEEEE
T ss_pred ---ccc--------Ccc----------------cchhhhhhcccc--cCCcccCCCCCCCCcEEEEEcCCCCCCCCEEEE
Confidence 000 000 112222111110 001112233567899999999999999999999
Q ss_pred cCchhHHHHHHhhcc--ccccCCcEEEecCCccchhhhHHHHhhhccCceEEEecCC--CchhhHHHHHHhcCceEEecc
Q 010344 161 TQLSPIRCAAEAWGH--IDMKVGDVYCWPTNLGWVMGPIILFSSFLSGAALALYHGS--PLERSFGKFVQDSGVSVLGTV 236 (512)
Q Consensus 161 s~~~~~~~~~~~~~~--~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~--~~~~~~~~~l~~~~~t~l~~~ 236 (512)
||+++.+...+.... +++.+++++++..|++|..++..++.++..|+++++.+.. .++..+++.++++++|++.++
T Consensus 166 sh~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~ 245 (521)
T 3l8c_A 166 SHDNLLSFTNWMIEDAAFDVPKQPQMLAQPPYSFDLSVMYWAPTLALGGTLFALPKELVADFKQLFTTIAQLPVGIWTST 245 (521)
T ss_dssp EHHHHHHHHHHHHHCTTTCCCSSCEEECCSCTTSGGGHHHHHHHHHTTCEEEECCGGGTTCHHHHHHHHHHSCCSEEEEC
T ss_pred ehHHHHHHHHHHhhccccCCCCCCeEEecCCccHHHHHHHHHHHHhcCCEEEEcCHHHhhCHHHHHHHHHHcCCcEEEeC
Confidence 999998877766544 6778999999999999999988888999999999997643 267889999999999999999
Q ss_pred hHHHHHHHccCCCCCCCcCceeEEEeecCCCCchhhHHHHHhhCCCCeeeecCCccccceecccCCC----CCCcccccc
Q 010344 237 PSLVKAWKNTNCLQGLDWTKIRSFASTGETSNVDDDLWLASKAYYKPIIECCGGTELASSYIQGSML----QPQAFGAFS 312 (512)
Q Consensus 237 P~~~~~l~~~~~~~~~~l~~l~~i~~~G~~l~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~----~~~~~~~~G 312 (512)
|+++..++........+++++|.+++||+++++++.+.+.+.++++++++.||+||++..++..... ......++|
T Consensus 246 P~~~~~l~~~~~~~~~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~vG 325 (521)
T 3l8c_A 246 PSFADMAMLSDDFCQAKMPALTHFYFDGEELTVSTARKLFERFPSAKIINAYGPTEATVALSAIEITREMVDNYTRLPIG 325 (521)
T ss_dssp HHHHHHHHTSTTCSTTTCTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEEEECCGGGSSCSEEEEECHHHHHHCSSCEEE
T ss_pred CCHHHHHhhhhccccccCccceEEEEecccCCHHHHHHHHHHCCCceEEeCcCccHHhhhhceeecccccccCCCccccc
Confidence 9999998887666677889999999999999999999999999889999999999998765443221 112346799
Q ss_pred cccCCccEEEeCCCCCCCCCCCCccccccc-ccccccccccccccCcceeEEecCCcccCceeeeecceEEEeCCCeEEE
Q 010344 313 TATMTTGFVILDELGVPYPDDQPCVGEVGL-FPLYLGATDRLLNADHEEVYFSGMPIYKGMHLRRHGDIIKRTVGGYIIV 391 (512)
Q Consensus 313 ~p~~~~~~~i~d~~~~~~~~g~~~~Gel~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~i 391 (512)
+|+++++++|+|++|++++.|+ .|||++ ++..+.+| +.+++.+...|.. .++++||+|||+|++|+||++++
T Consensus 326 ~p~~~~~~~i~d~~g~~~~~g~--~GEl~v~g~~v~~GY--~~~~~~t~~~f~~---~~~~~~~~TGDlg~~d~dG~l~~ 398 (521)
T 3l8c_A 326 YPKPDSPTYIIDEDGKELSSGE--QGEIIVTGPAVSKGY--LNNPEKTAEAFFT---FKGQPAYHTGDIGSLTEDNILLY 398 (521)
T ss_dssp EECTTSCEEEECTTSCBCCTTC--CEEEEEESTTSCSCB--TTCHHHHHHHEEE---ETTEEEEEEEEEEEECSSSCEEE
T ss_pred cccCCCEEEEECCCcCCCCCCC--ceEEEecccccChhh--cCCchHhhccCcC---CCCceeeeCCCEEEEeCCCeEEE
Confidence 9999999999999999999999 699999 55555432 2344444433321 25678999999999999999999
Q ss_pred EeccCceeeecceecchHHHHHhhhcCCcceeeeeEEeeCCCCCCCceEEEEEEecCCCCC--CcHHHHHHHHHHHHHhc
Q 010344 392 QGRADDTMNLGGIKTSSVEIERVCDGADESILETAAISVSPAGGGPEVLVICVVLKKGFTS--QPVDKLKMIFSKAIQRN 469 (512)
Q Consensus 392 ~gR~~d~i~~~G~~v~~~~iE~~l~~~~~~v~~~~v~~~~~~~~~~~~~~a~v~~~~~~~~--~~~~~l~~~~~~~~~~~ 469 (512)
+||.||+||++|++|+|.+||++|. +||+|.+++|++..+...+.+.++++|+++++... ....++.+.++++++++
T Consensus 399 ~GR~~d~i~~~G~~v~p~eIE~~l~-~~p~V~~a~vv~~~~~~~~~~~~~a~vv~~~~~~~~~~~~~~~~~~l~~~l~~~ 477 (521)
T 3l8c_A 399 GGRLDFQIKYAGYRIELEDVSQQLN-QSPMVASAVAVPRYNKEHKVQNLLAYIVVKDGVKERFDRELELTKAIKASVKDH 477 (521)
T ss_dssp EEEGGGBCC-----CBHHHHHHHHH-TSTTEEEEEEECCCSSSCC---CEEEEEECTTSGGGCSSHHHHHHHHHHHSGGG
T ss_pred eCcccceEeECCEEeCHHHHHHHHH-cCCCcceEEEEEeecCCCCceEEEEEEEecCccccccccchhhHHHHHHHHHhh
Confidence 9999999999999999999999998 89999999999887654433789999999876431 12345678889999999
Q ss_pred cCCccceeeEEEecCCCCCCCchHHHHHHHHHHHhhhhcc
Q 010344 470 LNPLFKVSLVKIVLEFPRTASNKLLRRVLKDQLKHELSVR 509 (512)
Q Consensus 470 l~~~~~p~~i~~~~~iP~t~~GKi~r~~l~~~~~~~~~~~ 509 (512)
|+.|++|..|+++++||+|++||++|++|+++++++....
T Consensus 478 l~~~~~P~~i~~v~~lP~t~~GKidr~~L~~~~~~~~~~~ 517 (521)
T 3l8c_A 478 MMSYMMPSKFLYRDSLPLTPNGKIDIKTLINEVNNREGHH 517 (521)
T ss_dssp SCGGGSCSEEEECSSCCBCTTSSBCHHHHHHHTC------
T ss_pred CccccCCeEEEEecccCCCCCcCccHHHHhhhhhcCCccc
Confidence 9999999999999999999999999999999998765543
No 17
>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*
Probab=100.00 E-value=4.5e-72 Score=575.30 Aligned_cols=472 Identities=17% Similarity=0.188 Sum_probs=292.7
Q ss_pred cHHHHHHHHhcc-CCCCCEEEEEcCCCHHHHHHHHHHHHhcceEeecCCCcCHHHHHHHHHhcCccEEEeccchhccCcc
Q 010344 2 SYRLVANALDTM-FSKGDAIAIDMPMTVHAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRK 80 (512)
Q Consensus 2 ~~~~~a~~L~~~-i~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~iv~~~~~~~~~~~ 80 (512)
.++++|++|++. +++||+|+++++|++++++++|||+++|++++|+++.++.+++.+++++++++++|+++.... ...
T Consensus 64 ~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~-~~~ 142 (544)
T 3o83_A 64 LSTNLATRLAEKGLGKGDTALVQLPNVAEFYIVFFALLKAGVVVLNALYSHRQYELNAFIKQIQPKLLIGSRQHEV-FSN 142 (544)
T ss_dssp HHHHHHHHHHHTTCCTTCEEEECCCSSHHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEEEETTSGG-GSS
T ss_pred HHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHhCcEEecCCCCCCHHHHHHHHHhcCeeEEEEcccccc-ccH
Confidence 378999999999 999999999999999999999999999999999999999999999999999999999875310 011
Q ss_pred ccchhhHHhcCCCceEEeeccCCcccccccccCccHHHHhhccCCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEe
Q 010344 81 FPLYSKVAEAGPLKAVVLPVIGDDVGIQLRQQDVSWKDFLSCVDYHPGPKYYPPVYRPVDSVINILFSSGTTGEPKAIPW 160 (512)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~ 160 (512)
......+.........++..... .....+.++...... .........++++++++|||||||.||+|++
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~----~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~ 211 (544)
T 3o83_A 143 NQFIDSLHDVNLSPEIILMLNHQ-------ATDFGLLDWIETPAE----TFVDFSSTPADEVAFFQLSGGSTGTPKLIPR 211 (544)
T ss_dssp SHHHHHHHHTTCCCSEEEEETCC-------TTSEEHHHHHHSCCS----SCCCCCCCCTTSEEEEEECCC--CCCCEEEE
T ss_pred HHHHHHHhhcccCcceEEEecCC-------ccccchhhhhhcccc----cccccccCCccceEEEEECCCcccCCceEEe
Confidence 12223333333322222211111 011234444433222 1111233467899999999999999999999
Q ss_pred cCchhHHHHHHhhccccccCCcEEEecCCccchhhhHH--HHhhhccCceEEEecCCCchhhHHHHHHhcCceEEecchH
Q 010344 161 TQLSPIRCAAEAWGHIDMKVGDVYCWPTNLGWVMGPII--LFSSFLSGAALALYHGSPLERSFGKFVQDSGVSVLGTVPS 238 (512)
Q Consensus 161 s~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~--~~~~l~~G~~~~~~~~~~~~~~~~~~l~~~~~t~l~~~P~ 238 (512)
+|+++.+.+......+++.++|++++.+|++|.+++.. ++.++..|+++++.+ ..++..+++.++++++|++.++|+
T Consensus 212 sh~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~i~~~~~t~~~~~P~ 290 (544)
T 3o83_A 212 THNDYDYSVRASAEICGLNSNTRLLCALPAPHNFMLSSPGALGVLHAGGCVVMAP-NPEPLNCFSIIQRHQVNMASLVPS 290 (544)
T ss_dssp EHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEEECS-SCCHHHHHHHHHHHTCCEEEECHH
T ss_pred chHHHHHHHHHHHHHhCCCCCCeEEEecCcceEeecchHHHHHHHHcCCEEEECC-CCCHHHHHHHHHHHCCCEEEechH
Confidence 99999999988888889999999999999999998863 889999999999976 567899999999999999999999
Q ss_pred HHHHHHccCCCCCCCcCceeEEEeecCCCCchhhHHHHHhhCCCCeeeecCCccccceecccCCCCCCccccccccc-CC
Q 010344 239 LVKAWKNTNCLQGLDWTKIRSFASTGETSNVDDDLWLASKAYYKPIIECCGGTELASSYIQGSMLQPQAFGAFSTAT-MT 317 (512)
Q Consensus 239 ~~~~l~~~~~~~~~~l~~l~~i~~~G~~l~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~G~p~-~~ 317 (512)
++..|++.......+++++|.+++||+++++++.+.+.+.+ ++++++.||+||++..+............++|.|+ ++
T Consensus 291 ~~~~l~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~G~p~~~~ 369 (544)
T 3o83_A 291 AVIMWLEKAAQYKDQIQSLKLLQVGGASFPESLARQVPEVL-NCKLQQVFGMAEGLVNYTRLDDSDEQIFTTQGRPISSD 369 (544)
T ss_dssp HHHHHHHHHTTTHHHHTTCCEEEEESSCCCHHHHTHHHHHH-CSEEEEEEECTTSCEEECCTTSCHHHHHHCCCEESCTT
T ss_pred HHHHHHhchhhccccCCcceEEEEcCCCCCHHHHHHHHHHh-CCcEEeeeccccccceeecCCCchhhccCCCceecCCC
Confidence 99999887655566789999999999999999999999888 78999999999988654433322223457899996 89
Q ss_pred ccEEEeCCCCCCCCCCCCccccccc-ccccccccccccccCcceeEEecCCcccCceeeeecceEEEeCCCeEEEEeccC
Q 010344 318 TGFVILDELGVPYPDDQPCVGEVGL-FPLYLGATDRLLNADHEEVYFSGMPIYKGMHLRRHGDIIKRTVGGYIIVQGRAD 396 (512)
Q Consensus 318 ~~~~i~d~~~~~~~~g~~~~Gel~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~i~gR~~ 396 (512)
++++|+|+++++++.|+ .|||++ ++..+.+| +.+++.+...| +.++||+|||+|++|+||+++++||.|
T Consensus 370 ~~~~i~d~~~~~~~~g~--~GEl~v~g~~v~~GY--~~~~~~t~~~f------~~~g~~~TGDlg~~~~dG~l~~~GR~d 439 (544)
T 3o83_A 370 DEIKIVDEQYREVPEGE--IGMLATRGPYTFCGY--YQSPEHNSQVF------DEDNYYYSGDLVQRTPDGNLRVVGRIK 439 (544)
T ss_dssp CEEEEECTTSCBCCTTC--CEEEEEECTTSCSCC--TTCHHHHHHHB------CTTCCEEEEEEEEECTTSCEEEEEEEC
T ss_pred cEEEEECCCCCCCCCCC--eeEEEEecCCcchhh--cCChhhhhhhC------CCCCCeEcCCEEEEcCCCCEEEEeecC
Confidence 99999999999999999 699999 55555432 22333343333 356799999999999999999999999
Q ss_pred ceeeecceecchHHHHHhhhcCCcceeeeeEEeeCCCCCCCceEEEEEEecCCCCCCcHHHHHHHHHHHHHh-ccCCccc
Q 010344 397 DTMNLGGIKTSSVEIERVCDGADESILETAAISVSPAGGGPEVLVICVVLKKGFTSQPVDKLKMIFSKAIQR-NLNPLFK 475 (512)
Q Consensus 397 d~i~~~G~~v~~~~iE~~l~~~~~~v~~~~v~~~~~~~~~~~~~~a~v~~~~~~~~~~~~~l~~~~~~~~~~-~l~~~~~ 475 (512)
|+||++|++|+|.|||++|. +||+|.+++|++.+++..+ +.++++|+.++.. .+.+++.+++ .+ +|+.|++
T Consensus 440 d~ik~~G~~v~p~eIE~~l~-~~p~V~~a~vv~~~~~~~g-~~~~a~vv~~~~~--~~~~~l~~~~----~~~~l~~~~~ 511 (544)
T 3o83_A 440 DQINRGGEKIASEEIEKLIL-LHPEVMHAALVAIVDEQFG-EKSCAFIVSRNPE--LKAVVLRRHL----MELGIAQYKL 511 (544)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CEEEeCCEEECHHHHHHHHH-hCCCccEEEEEeccCCCCC-ceEEEEEEeCCCC--CCHHHHHHHH----HhCCCCcccC
Confidence 99999999999999999998 8999999999999998888 8899999987632 3444454444 45 7899999
Q ss_pred eeeEEEecCCCCCCCchHHHHHHHHHHHhh
Q 010344 476 VSLVKIVLEFPRTASNKLLRRVLKDQLKHE 505 (512)
Q Consensus 476 p~~i~~~~~iP~t~~GKi~r~~l~~~~~~~ 505 (512)
|+.|+++++||+|++||++|++|++++++.
T Consensus 512 P~~i~~v~~lP~t~~GKi~r~~L~~~~~~~ 541 (544)
T 3o83_A 512 PDQIKLIESLPLTAVGKVDKKQLRSILNTS 541 (544)
T ss_dssp ------------------------------
T ss_pred CcEEEEeccCCCCCCCCCcHHHHHHHHhhc
Confidence 999999999999999999999999988753
No 18
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1
Probab=100.00 E-value=1.3e-70 Score=565.63 Aligned_cols=447 Identities=18% Similarity=0.157 Sum_probs=363.1
Q ss_pred cHHHHHHHHhcc-CCCCCEEEEEcCCCHHHHHHHHHHHHhcceEeecCCCcCHHHHHHHHHhcCccEEEeccchhccCcc
Q 010344 2 SYRLVANALDTM-FSKGDAIAIDMPMTVHAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRK 80 (512)
Q Consensus 2 ~~~~~a~~L~~~-i~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~iv~~~~~~~~~~~ 80 (512)
.++++|++|++. +++||+|+++++|++++++++|||+++|++++|++|.++.+++.+++++++++++|+++....
T Consensus 73 ~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~il~~~~~~~li~~~~~~~---- 148 (563)
T 1amu_A 73 KANQLARIFIEKGIGKDTLVGIMMEKSIDLFIGILAVLKAGGAYVPIDIEYPKERIQYILDDSQARMLLTQKHLVH---- 148 (563)
T ss_dssp HHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHH----
T ss_pred HHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEEEeCCCCcHHHHHHHHHhcCCCEEEEcCchhh----
Confidence 378999999999 999999999999999999999999999999999999999999999999999999999974321
Q ss_pred ccchhhHHhcCC--CceEEeeccCCcccccccccCccHHHHhhccCCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCceE
Q 010344 81 FPLYSKVAEAGP--LKAVVLPVIGDDVGIQLRQQDVSWKDFLSCVDYHPGPKYYPPVYRPVDSVINILFSSGTTGEPKAI 158 (512)
Q Consensus 81 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v 158 (512)
...... .....+. .. .+ .. .. .........++++++++|||||||.||||
T Consensus 149 ------~~~~~~~~~~~~~~~--~~-----------~~---~~-~~-----~~~~~~~~~~~d~a~i~~TSGTTG~PKgV 200 (563)
T 1amu_A 149 ------LIHNIQFNGQVEIFE--ED-----------TI---KI-RE-----GTNLHVPSKSTDLAYVIYTSGTTGNPKGT 200 (563)
T ss_dssp ------HHTTSCCCSEEEECC--CS-----------TT---TT-SC-----CSCCCCCCCTTSEEEEEEEC-----CEEE
T ss_pred ------hhhhccccCceeeec--ch-----------hh---cc-cc-----CccCCCCCCCCCeEEEEECCCCCCCCcEE
Confidence 111111 1111111 00 00 00 00 00111234578899999999999999999
Q ss_pred EecCchhHHHHHHhhccccccCCcEEEecCCccchhhhHHHHhhhccCceEEEecCC--CchhhHHHHHHhcCceEEecc
Q 010344 159 PWTQLSPIRCAAEAWGHIDMKVGDVYCWPTNLGWVMGPIILFSSFLSGAALALYHGS--PLERSFGKFVQDSGVSVLGTV 236 (512)
Q Consensus 159 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~--~~~~~~~~~l~~~~~t~l~~~ 236 (512)
++||+++.+.+......+++.++|++++..|++|..+++.++.+++.|+++++.+.. .++..+++.++++++|++.++
T Consensus 201 ~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~i~~~~~t~~~~~ 280 (563)
T 1amu_A 201 MLEHKGISNLKVFFENSLNVTEKDRIGQFASISFDASVWEMFMALLTGASLYIILKDTINDFVKFEQYINQKEITVITLP 280 (563)
T ss_dssp EEESHHHHHHHHHHHHTSCCCTTCEEEECSCTTSTHHHHHHHHHHTTTCEEEECCHHHHTCHHHHHHHHHHTTCCEEEEC
T ss_pred EEehHHHHHHHHHHHHhcCCCCCCEEEEeCCccHHHHHHHHHHHHHCCCEEEEcChHhhcCHHHHHHHHHHcCCcEEEeC
Confidence 999999998888777778899999999999999999988888999999999997642 467889999999999999999
Q ss_pred hHHHHHHHccCCCCCCCcCceeEEEeecCCCCchhhHHHHHhhCCCCeeeecCCccccceecccCCC--CCCcccccccc
Q 010344 237 PSLVKAWKNTNCLQGLDWTKIRSFASTGETSNVDDDLWLASKAYYKPIIECCGGTELASSYIQGSML--QPQAFGAFSTA 314 (512)
Q Consensus 237 P~~~~~l~~~~~~~~~~l~~l~~i~~~G~~l~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~--~~~~~~~~G~p 314 (512)
|+++..|.. .+++++|.+++||+++++++.+.+.+. .++++.||+||++...+..... ......++|+|
T Consensus 281 P~~~~~l~~------~~~~~lr~~~~gG~~l~~~~~~~~~~~---~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~vG~p 351 (563)
T 1amu_A 281 PTYVVHLDP------ERILSIQTLITAGSATSPSLVNKWKEK---VTYINAYGPTETTICATTWVATKETIGHSVPIGAP 351 (563)
T ss_dssp HHHHTTSCT------TTCCSCSEEEEESSCCCHHHHHHHTTT---SEEEEEECCGGGSSCSEEEECCSSCCCSSCCCBEE
T ss_pred HHHHHHHHh------cccccccEEEEEEecCCHHHHHHHHhC---CeEEEEECcCHHhHhheeeecccccCCCCCcccce
Confidence 999887643 246789999999999999999988753 6799999999998755443221 12345689999
Q ss_pred cCCccEEEeCCCCCCCCCCCCccccccc-ccccccccccccccCcceeEEecCCcccCceeeeecceEEEeCCCeEEEEe
Q 010344 315 TMTTGFVILDELGVPYPDDQPCVGEVGL-FPLYLGATDRLLNADHEEVYFSGMPIYKGMHLRRHGDIIKRTVGGYIIVQG 393 (512)
Q Consensus 315 ~~~~~~~i~d~~~~~~~~g~~~~Gel~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~i~g 393 (512)
+++++++|+|+++++++.|+ .|||++ ++..+.+| +.+++.+...|..++..++++||+|||+|++|+||+++|+|
T Consensus 352 ~~~~~v~i~d~~~~~~~~g~--~GEl~v~g~~v~~GY--~~~pe~t~~~f~~~~~~~g~~w~~TGDlg~~d~dG~l~i~G 427 (563)
T 1amu_A 352 IQNTQIYIVDENLQLKSVGE--AGELCIGGEGLARGY--WKRPELTSQKFVDNPFVPGEKLYKTGDQARWLSDGNIEYLG 427 (563)
T ss_dssp CTTEEEEEECTTSCBCCTTC--EEEEEEEETTCCCEE--TTCHHHHHHHEEECSSSTTSEEEEEEEEEEECTTSCEEEEE
T ss_pred eCCCEEEEECCCcCCCCCCC--cEEEEEechhhChhh--CCCchhhhhhcccCCCCCCCEEEecCCEEEEcCCCeEEEec
Confidence 99999999999999999999 799999 66655432 33555565666666666778999999999999999999999
Q ss_pred ccCceeeecceecchHHHHHhhhcCCcceeeeeEEeeCCCCCCCceEEEEEEecCCCCCCcHHHHHHHHHHHHHhccCCc
Q 010344 394 RADDTMNLGGIKTSSVEIERVCDGADESILETAAISVSPAGGGPEVLVICVVLKKGFTSQPVDKLKMIFSKAIQRNLNPL 473 (512)
Q Consensus 394 R~~d~i~~~G~~v~~~~iE~~l~~~~~~v~~~~v~~~~~~~~~~~~~~a~v~~~~~~~~~~~~~l~~~~~~~~~~~l~~~ 473 (512)
|.||+||++|++|+|.+||++|. +||+|.+++|++.+++..+ +.++|+|+..+. .+.+++. ++++++|+.|
T Consensus 428 R~~d~Ik~~G~~V~p~eIE~~l~-~~p~V~~a~Vv~~~~~~~~-~~~~a~vv~~~~---~~~~~l~----~~l~~~L~~y 498 (563)
T 1amu_A 428 RIDNQVKIRGHRVELEEVESILL-KHMYISETAVSVHKDHQEQ-PYLCAYFVSEKH---IPLEQLR----QFSSEELPTY 498 (563)
T ss_dssp EGGGEEEETTEEEEHHHHHHHHT-TSTTEEEEEEEEEECTTSC-EEEEEEEEESSC---CCHHHHH----HHHHHHSCGG
T ss_pred cccCEEEECCEEeCHHHHHHHHH-hCCCcceEEEEEeecCCCC-eEEEEEEEeCCC---CCHHHHH----HHHHhhCchh
Confidence 99999999999999999999998 8999999999999988777 889999997643 4555554 4555789999
Q ss_pred cceeeEEEecCCCCCCCchHHHHHHHHHH
Q 010344 474 FKVSLVKIVLEFPRTASNKLLRRVLKDQL 502 (512)
Q Consensus 474 ~~p~~i~~~~~iP~t~~GKi~r~~l~~~~ 502 (512)
++|+.|+++++||+|++||++|++|++..
T Consensus 499 ~~P~~i~~v~~lP~t~~GKi~r~~L~~~~ 527 (563)
T 1amu_A 499 MIPSYFIQLDKMPLTSNGKIDRKQLPEPD 527 (563)
T ss_dssp GSCSEEEECSSCCBCTTSSBCGGGSCCCC
T ss_pred hCCcEEEEecccCCCCCcChhHHhcCCcc
Confidence 99999999999999999999999998754
No 19
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}
Probab=100.00 E-value=7.2e-70 Score=557.95 Aligned_cols=466 Identities=21% Similarity=0.237 Sum_probs=365.4
Q ss_pred cHHHHHHHHhcc-CCCCCEEEEEcCCCHHHHHHHHHHHHhcceEeecCCCcCHHHHHHHHHhcCccEEEeccchhccCcc
Q 010344 2 SYRLVANALDTM-FSKGDAIAIDMPMTVHAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRK 80 (512)
Q Consensus 2 ~~~~~a~~L~~~-i~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~iv~~~~~~~~~~~ 80 (512)
.++++|++|++. +++||+|+++++|++++++++|||+++|++++|+++.++.+++.+++++++++++|++....
T Consensus 57 ~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~----- 131 (529)
T 2v7b_A 57 RARRFASALRTLGVHPEERILLVMLDTVALPVAFLGALYAGVVPVVANTLLTPADYVYMLTHSHARAVIASGALV----- 131 (529)
T ss_dssp HHHHHHHHHHHTTCCTTCEEEEECCSSTHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEEEEGGGH-----
T ss_pred HHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCceEEecCcccCHHHHHHHHhccCCeEEEechhhh-----
Confidence 378999999999 99999999999999999999999999999999999999999999999999999999997532
Q ss_pred ccchhhHHhcCCC--ceEEeeccCCcccccccccCccHHHHhhccCCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCceE
Q 010344 81 FPLYSKVAEAGPL--KAVVLPVIGDDVGIQLRQQDVSWKDFLSCVDYHPGPKYYPPVYRPVDSVINILFSSGTTGEPKAI 158 (512)
Q Consensus 81 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v 158 (512)
+.+......... ..++....... .......++++...... ........++++++++|||||||.||+|
T Consensus 132 -~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~-----~~~~~~~~~~d~a~i~~TSGTTG~PKgv 201 (529)
T 2v7b_A 132 -QNVTQALESAEHDGCQLIVSQPRES----EPRLAPLFEELIDAAAP-----AAKAAATGCDDIAFWLYSSGSTGKPKGT 201 (529)
T ss_dssp -HHHHHHHHCC---CCEEEEECC----------CCCBHHHHHHTSCC-----CSSCCCCCTTSEEEEEEC-----CCCEE
T ss_pred -hHHHHHHhhccccCceEEEeccccc----ccccccchhhhhccCCC-----cccccCCCCCCeEEEEECCCCCCCCceE
Confidence 222233222111 11221111000 00112256666543221 1122334678999999999999999999
Q ss_pred EecCchh-HHHHHHhhccccccCCcEEEecCCccchhhhHH-HHhhhccCceEEEecCCCchhhHHHHHHhcCceEEecc
Q 010344 159 PWTQLSP-IRCAAEAWGHIDMKVGDVYCWPTNLGWVMGPII-LFSSFLSGAALALYHGSPLERSFGKFVQDSGVSVLGTV 236 (512)
Q Consensus 159 ~~s~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~-~~~~l~~G~~~~~~~~~~~~~~~~~~l~~~~~t~l~~~ 236 (512)
++||+++ ..........+++.++|++++..|++|.+++.. ++.++..|+++++.+...++..+++.++++++|+++++
T Consensus 202 ~~sh~~l~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~ 281 (529)
T 2v7b_A 202 VHTHANLYWTAELYAKPILGIAENDVVFSAAKLFFAYGLGNGLTFPLSVGATAILMAERPTADAIFARLVEHRPTVFYGV 281 (529)
T ss_dssp EEEHHHHHHHHHHTCCCCCCCCTTCEEEESSCTTSHHHHHHHTHHHHHHTCEEECCCSCCCHHHHHHHHHHSCCSEEEEC
T ss_pred EEEhhHHHHHHHHHhhhccCCCCCcEEEEeecHHHHHHHHHHHHHHHhcCcEEEEecCCCCHHHHHHHHHHhCCEEEEec
Confidence 9999999 565555555678899999999999999999865 67899999999987656788999999999999999999
Q ss_pred hHHHHHHHccCCCCCCCcCceeEEEeecCCCCchhhHHHHHhhCCCCeeeecCCccccceecccCCCCCCcccccccccC
Q 010344 237 PSLVKAWKNTNCLQGLDWTKIRSFASTGETSNVDDDLWLASKAYYKPIIECCGGTELASSYIQGSMLQPQAFGAFSTATM 316 (512)
Q Consensus 237 P~~~~~l~~~~~~~~~~l~~l~~i~~~G~~l~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~G~p~~ 316 (512)
|+++..+++..........++|.+++||+++++++.+.+.+.+ ++++++.||+||++.+++.... .....+++|.|++
T Consensus 282 P~~~~~l~~~~~~~~~~~~~lr~~~~gGe~l~~~~~~~~~~~~-g~~i~~~YG~TE~~~~~~~~~~-~~~~~~~~G~p~~ 359 (529)
T 2v7b_A 282 PTLYANMLVSPNLPARADVAIRICTSAGEALPREIGERFTAHF-GCEILDGIGSTEMLHIFLSNRA-GAVEYGTTGRPVP 359 (529)
T ss_dssp HHHHHHHHTCTTCCCGGGCCCCEEEECSSCCCHHHHHHHHHHH-SCCEEEEEECTTTSSEEEECCT-TCCCTTSCCEECT
T ss_pred HHHHHHHHhCcccccccCCceEEEEEcCCCCCHHHHHHHHHHh-CCceeeeEchhhcCceeecccc-CCCccCCcccCCC
Confidence 9999999876543333124899999999999999999999888 7899999999999765544432 2245678999999
Q ss_pred CccEEEeCCCCCCCCCCCCccccccc-ccccccccccccccCcceeEEecCCcccCceeeeecceEEEeCCCeEEEEecc
Q 010344 317 TTGFVILDELGVPYPDDQPCVGEVGL-FPLYLGATDRLLNADHEEVYFSGMPIYKGMHLRRHGDIIKRTVGGYIIVQGRA 395 (512)
Q Consensus 317 ~~~~~i~d~~~~~~~~g~~~~Gel~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~i~gR~ 395 (512)
+++++|+|++|++++.|+ .|||++ ++..+.+ |+.+++.+...|. ++||+|||+|++++||+++++||.
T Consensus 360 ~~~~~i~d~~g~~~~~g~--~GEl~v~g~~~~~g--Y~~~~~~t~~~f~-------~~~~~TGDl~~~~~~G~l~~~GR~ 428 (529)
T 2v7b_A 360 GYEIELRDEAGHAVPDGE--VGDLYIKGPSAAVM--YWNNREKSRATFL-------GEWIRSGDKYCRLPNGCYVYAGRS 428 (529)
T ss_dssp TCEEEEECTTSCBCCTTS--CEEEEEECTTCCCC--BTTCHHHHHHHEE-------TTEEEEEEEEEECTTSCEEEEEEG
T ss_pred CCEEEEECCCCCCCCCCC--ccEEEEecCCcccc--cCCChHHHHHhhh-------cCCcccCceEEECCCccEEEeCcc
Confidence 999999999999999999 699999 5555443 2233444444443 469999999999999999999999
Q ss_pred CceeeecceecchHHHHHhhhcCCcceeeeeEEeeCCCCCCCceEEEEEEecCCCCCCcHHHHHHHHHHHHHhccCCccc
Q 010344 396 DDTMNLGGIKTSSVEIERVCDGADESILETAAISVSPAGGGPEVLVICVVLKKGFTSQPVDKLKMIFSKAIQRNLNPLFK 475 (512)
Q Consensus 396 ~d~i~~~G~~v~~~~iE~~l~~~~~~v~~~~v~~~~~~~~~~~~~~a~v~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~ 475 (512)
||+||++|++|+|.+||++|. +||+|.+++|++. ++..+ +.++++|++.++.. ..+.+.+.++++++++|+.|++
T Consensus 429 dd~ik~~G~~v~p~eIE~~l~-~~p~V~~~~vv~~-~~~~~-~~~~a~vv~~~~~~--~~~~~~~~l~~~l~~~L~~~~~ 503 (529)
T 2v7b_A 429 DDMLKVSGQYVSPVEVEMVLV-QHDAVLEAAVVGV-DHGGL-VKTRAFVVLKREFA--PSEILAEELKAFVKDRLAPHKY 503 (529)
T ss_dssp GGCBC----CBCHHHHHHHHT-TSTTEEEEEEEEE-EETTE-EEEEEEEEECTTCC--CCHHHHHHHHHHHHTTSCTTTS
T ss_pred CCeEEECCEEECHHHHHHHHH-hCCCcceEEEEEe-cCCCc-eEEEEEEEecCCCC--cchhHHHHHHHHHHhhcchhhC
Confidence 999999999999999999998 8999999999999 65566 78999999876532 1233456788888899999999
Q ss_pred eeeEEEecCCCCCCCchHHHHHHHH
Q 010344 476 VSLVKIVLEFPRTASNKLLRRVLKD 500 (512)
Q Consensus 476 p~~i~~~~~iP~t~~GKi~r~~l~~ 500 (512)
|+.|+++++||+|++||++|++|++
T Consensus 504 P~~i~~v~~lP~t~~GKi~r~~L~~ 528 (529)
T 2v7b_A 504 PRDIVFVDDLPKTATGKIQRFKLRE 528 (529)
T ss_dssp CSEEEEESCCCBCTTSCBCHHHHHC
T ss_pred CeEEEEeccCCCCCccchhHHhHhh
Confidence 9999999999999999999999985
No 20
>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A
Probab=100.00 E-value=2.5e-71 Score=573.00 Aligned_cols=452 Identities=19% Similarity=0.201 Sum_probs=282.0
Q ss_pred cHHHHHHHHhcc-CCCCCEEEEEcCCCHHHHHHHHHHHHhcceEeecCCCcCHHHHHHHHHhcCccEEEeccchhccCcc
Q 010344 2 SYRLVANALDTM-FSKGDAIAIDMPMTVHAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRK 80 (512)
Q Consensus 2 ~~~~~a~~L~~~-i~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~iv~~~~~~~~~~~ 80 (512)
.++++|++|++. +++||+|+++++|++++++++|||+++|++++|++|.++.+++.+++++++++++|+++......
T Consensus 109 ~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~-- 186 (570)
T 4gr5_A 109 RANRLAHRLVGLGVAPGTLVGVHLERGFDMVVALLAVLKAGGGYTMLDPQFPVERLALSLEDTGAPLLVTSRPLSGRL-- 186 (570)
T ss_dssp HHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECTTTTTSS--
T ss_pred HHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHHCCEEEEcCCCChHHHHHHHHHhcCCCEEEecchhhhcc--
Confidence 478999999999 99999999999999999999999999999999999999999999999999999999997532110
Q ss_pred ccchhhHHhcCCCceEEeeccCCcccccccccCccHHHHhhccCCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEe
Q 010344 81 FPLYSKVAEAGPLKAVVLPVIGDDVGIQLRQQDVSWKDFLSCVDYHPGPKYYPPVYRPVDSVINILFSSGTTGEPKAIPW 160 (512)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~ 160 (512)
.....+... .. .... ...........++++++++|||||||.||||++
T Consensus 187 -----------~~~~~~~~~-~~---------------~~~~-----~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~ 234 (570)
T 4gr5_A 187 -----------TGTTTLYVE-DE---------------AASD-----APAGNLATGVGPEDVACVMFTSGSTGRPKGVMS 234 (570)
T ss_dssp -----------CSSEEEECC-C---------------------------CCCCCCCCCTTSEEEEECCSSCCSSCCCEEE
T ss_pred -----------cCCcceeee-cc---------------cccc-----ccccccCCCCCCCCeEEEEECCcCCCCCeEEEE
Confidence 000111100 00 0000 001112233567899999999999999999999
Q ss_pred cCchhHHHHHHhhccccccCCcEEEecCCccchhhhHHHHhhhccCceEEEecC-CCchhhHHHHHHhcCceEEecchHH
Q 010344 161 TQLSPIRCAAEAWGHIDMKVGDVYCWPTNLGWVMGPIILFSSFLSGAALALYHG-SPLERSFGKFVQDSGVSVLGTVPSL 239 (512)
Q Consensus 161 s~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~G~~~~~~~~-~~~~~~~~~~l~~~~~t~l~~~P~~ 239 (512)
+|+++.+.... ...+++.++|++++.+|++|..+...++.+++.|+++++.+. ..++..+++.|+++++|++.++|++
T Consensus 235 th~~l~~~~~~-~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~ 313 (570)
T 4gr5_A 235 PHRALTGTYLG-QDYAGFGPDEVFLQCSPVSWDAFGLELFGALLFGARCVLQSGQNPDPLEIGELVARHGVTMLQLSASL 313 (570)
T ss_dssp EHHHHHHHHSS-CCSSCCSTTCEEEECSCTTSSTHHHHHHHHHTTTCEEEECSSSSCCHHHHHHHHHHHTCCEEEEEHHH
T ss_pred ecHHHHHHHHh-hhhcCCCCCCEEEEecCccHHHHHHHHHHHHhcCCEEEEcCCccCCHHHHHHHHHHcCCcEEEecHHH
Confidence 99998766544 445678899999999999998777778999999999999764 4578899999999999999999999
Q ss_pred HHHHHccCCCCCCCcCceeEEEeecCCCCchhhHHHHHhhCCCCeeeecCCccccceecccCCC---CCCcccccccccC
Q 010344 240 VKAWKNTNCLQGLDWTKIRSFASTGETSNVDDDLWLASKAYYKPIIECCGGTELASSYIQGSML---QPQAFGAFSTATM 316 (512)
Q Consensus 240 ~~~l~~~~~~~~~~l~~l~~i~~~G~~l~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~---~~~~~~~~G~p~~ 316 (512)
+..|++.. ..++++||.+++||+++++++.+.+.+.++++++++.||+||+++..+..... ......++|+|++
T Consensus 314 ~~~l~~~~---~~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~iG~p~~ 390 (570)
T 4gr5_A 314 FNFLVDEV---PEAFEGVRYAITGGEPASVPHVAKARRDHPALRLGNGYGPAESMGFTTHHAVVAGDLSGTALPIGVPLA 390 (570)
T ss_dssp HHHHHHHC---GGGGTTCSEEEEESSCCCHHHHHHHHHHCTTCEEEEEECCGGGCSCSEEEECCGGGTTSSSCCCBEECT
T ss_pred HHHHHhhc---hhhCCCceEEEEecccCCHHHHHHHHHhCCCcEEEEeechhhheeeeeeeeecccccCCCccccceeeC
Confidence 99998764 23578999999999999999999999888889999999999998765433221 2233467999999
Q ss_pred CccEEEeCCCCCCCCCCCCccccccc-ccccccccccccccCcceeEEecCCc--ccCceeeeecceEEEeCCCeEEEEe
Q 010344 317 TTGFVILDELGVPYPDDQPCVGEVGL-FPLYLGATDRLLNADHEEVYFSGMPI--YKGMHLRRHGDIIKRTVGGYIIVQG 393 (512)
Q Consensus 317 ~~~~~i~d~~~~~~~~g~~~~Gel~v-~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~TGD~~~~~~~g~l~i~g 393 (512)
+++++|+|+++++++.|+ .|||+| ++..+.+| +.+++.+...|..+++ .++++||+|||+|++|+||+++|+|
T Consensus 391 ~~~v~i~d~~~~~~~~G~--~GEl~v~g~~v~~GY--~~~~~~t~~~f~~~~~~~~~~~~w~~TGDlg~~d~dG~l~~~G 466 (570)
T 4gr5_A 391 GKRAYVLDDDLKPAANGA--LGELYVAGAGLAHGY--VSRPALTAERFVADPFAGPGGERMYRTGDLARRRADGVLEYVG 466 (570)
T ss_dssp TEEEEEECTTSCBCCTTC--EEEEEEEETTCCCEE--TTCHHHHHHHEEECTTCCSSCCEEEEEEEEEEECTTSCEEEEE
T ss_pred CCEEEEECCCCCCCCCCC--cEEEEEeecccchhc--CCCchhhhcccccCCCCCCCCCEEEeCCCeEEECCCCeEEEEc
Confidence 999999999999999999 799999 66655532 3345555555655544 2466899999999999999999999
Q ss_pred ccCceeeecceecchHHHHHhhhcCCcceeeeeEEeeCCCCCCCceEEEEEEecCCCCCCcHHHHHHHHHHHHHhccCCc
Q 010344 394 RADDTMNLGGIKTSSVEIERVCDGADESILETAAISVSPAGGGPEVLVICVVLKKGFTSQPVDKLKMIFSKAIQRNLNPL 473 (512)
Q Consensus 394 R~~d~i~~~G~~v~~~~iE~~l~~~~~~v~~~~v~~~~~~~~~~~~~~a~v~~~~~~~~~~~~~l~~~~~~~~~~~l~~~ 473 (512)
|+||+||++|++|+|.|||++|. +||+|.+++|++.+++..+ +.++++|+.+++....+.+++. ++++++|+.|
T Consensus 467 R~~d~Ik~~G~~v~p~eIE~~l~-~~p~V~~a~Vv~~~~~~~~-~~~~a~vv~~~~~~~~~~~~l~----~~l~~~l~~~ 540 (570)
T 4gr5_A 467 RADDQVKIRGFRVEPGEVEARLV-GHPAVRQAAVLAQDSRLGD-KQLVAYVVAERADAPPDAAELR----RHVAEALPAY 540 (570)
T ss_dssp C-------------------------------------------------------------------------------
T ss_pred ccCCEEEECcEEeCHHHHHHHHh-cCCCcceEEEEEeeCCCCC-eEEEEEEEecCCCCCcCHHHHH----HHHHhhCccc
Confidence 99999999999999999999998 8999999999999888777 8899999987643224444444 4555778899
Q ss_pred cceeeEEEecCCCCCCCchHHHHHHHHH
Q 010344 474 FKVSLVKIVLEFPRTASNKLLRRVLKDQ 501 (512)
Q Consensus 474 ~~p~~i~~~~~iP~t~~GKi~r~~l~~~ 501 (512)
++|..|+++++||+|++||++|++|++.
T Consensus 541 ~~P~~i~~v~~lP~t~~GKi~R~~L~~~ 568 (570)
T 4gr5_A 541 MVPVECVPVDELPRTPNGKLDRRALTGS 568 (570)
T ss_dssp ----------------------------
T ss_pred cCCcEEEEcccCCCCCCcCcchHhhhcc
Confidence 9999999999999999999999999875
No 21
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}
Probab=100.00 E-value=3.5e-69 Score=561.79 Aligned_cols=469 Identities=17% Similarity=0.178 Sum_probs=380.0
Q ss_pred cHHHHHHHHhcc-CCCCCEEEEEcCCCHHHHHHHHHHHHhcceEeecCCCcCHHHHHHHHHhcCccEEEeccchhccCcc
Q 010344 2 SYRLVANALDTM-FSKGDAIAIDMPMTVHAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRK 80 (512)
Q Consensus 2 ~~~~~a~~L~~~-i~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~iv~~~~~~~~~~~ 80 (512)
.++++|++|++. +++||+|+++++|++++++++|||+++|++++|++|.++.+++.++++++++++++++...... ..
T Consensus 59 ~a~~lA~~L~~~Gv~~gd~V~l~~~~s~~~vva~lA~l~aG~~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~-~~ 137 (617)
T 3rg2_A 59 AADNLACSLRRQGIKPGETALVQLGNVAELYITFFALLKLGVAPVLALFSHQRSELNAYASQIEPALLIADRQHALF-SG 137 (617)
T ss_dssp HHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHHTCEEEEECTTCCHHHHHHHHHHHCCSEEEEETTSGGG-SS
T ss_pred HHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHHhcCeEEccCCccccHHHHHHHHhhcCceEEEeccccccc-cc
Confidence 478999999999 9999999999999999999999999999999999999999999999999999999999753210 00
Q ss_pred ccchhhHHhcCCCc-eEEeeccCCcccccccccCccHHHHhhccCCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCceEE
Q 010344 81 FPLYSKVAEAGPLK-AVVLPVIGDDVGIQLRQQDVSWKDFLSCVDYHPGPKYYPPVYRPVDSVINILFSSGTTGEPKAIP 159 (512)
Q Consensus 81 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~ 159 (512)
......+....+.. ...+... .....+.+....... ........++++++++|||||||.||||+
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~-----~~~~~~~~~~~~a~ii~TSGSTG~PKgV~ 203 (617)
T 3rg2_A 138 DDFLNTFVTEHSSIRVVQLLND---------SGEHNLQDAINHPAE-----DFTATPSPADEVAYFQLSGGTTGTPKLIP 203 (617)
T ss_dssp SHHHHHHHHHSTTCCEEEEETC---------CSTTBHHHHHHSCCS-----SCCCCCCCTTSEEEEEECCCSSSSCCEEE
T ss_pred HHHHHHHhhcCCccceeeeccc---------ccccchhhhhccccc-----ccCCCCCCCCCeEEEEECCCcCCCCCEee
Confidence 11222233333222 2222111 111234444432221 12223346789999999999999999999
Q ss_pred ecCchhHHHHHHhhccccccCCcEEEecCCccchhhhHH--HHhhhccCceEEEecCCCchhhHHHHHHhcCceEEecch
Q 010344 160 WTQLSPIRCAAEAWGHIDMKVGDVYCWPTNLGWVMGPII--LFSSFLSGAALALYHGSPLERSFGKFVQDSGVSVLGTVP 237 (512)
Q Consensus 160 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~--~~~~l~~G~~~~~~~~~~~~~~~~~~l~~~~~t~l~~~P 237 (512)
++|+++.+.+......+++.+++++++.+|++|.+++.. ++.+++.|+++++.+ ..++..+++.++++++|++.++|
T Consensus 204 ~th~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~i~~~~~t~~~~~P 282 (617)
T 3rg2_A 204 RTHNDYYYSVRRSVEICQFTQQTRYLCAIPAAHNYAMSSPGSLGVFLAGGTVVLAA-DPSATLCFPLIEKHQVNVTALVP 282 (617)
T ss_dssp EEHHHHHHHHHHHHHHHTCCTTCEEEECSCTTSHHHHHSSHHHHHHHHTCEEEECS-SCCHHHHHHHHHHTTCCEEEECH
T ss_pred hhHHHHHHHHHHHHHhcCCCCcceEEEeccchhhhhhhHHHHHHHHHcCCEEEEeC-CCCHHHHHHHHHHhCCcEEEcch
Confidence 999999999988888889999999999999999988764 889999999999976 46778899999999999999999
Q ss_pred HHHHHHHccCCC--CCCCcCceeEEEeecCCCCchhhHHHHHhhCCCCeeeecCCccccceecccCCCCCCccccccccc
Q 010344 238 SLVKAWKNTNCL--QGLDWTKIRSFASTGETSNVDDDLWLASKAYYKPIIECCGGTELASSYIQGSMLQPQAFGAFSTAT 315 (512)
Q Consensus 238 ~~~~~l~~~~~~--~~~~l~~l~~i~~~G~~l~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~G~p~ 315 (512)
+++..|++.... ...+++++|.+++|||++++++.+.+.+.+ ++++++.||+||++..++...........++|.|+
T Consensus 283 ~~~~~l~~~~~~~~~~~~l~~lr~i~~gGe~l~~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~p~ 361 (617)
T 3rg2_A 283 PAVSLWLQALIEGESRAQLASLKLLQVGGARLSATLAARIPAEI-GCQLQQVFGMAEGLVNYTRLDDSAEKIIHTQGYPM 361 (617)
T ss_dssp HHHHHHHHHHHTTCCTTTTTTCCEEEEESSCCCHHHHHHHHHHT-CSEEEEEEEETTEEEEECCTTSCHHHHHHCCCEES
T ss_pred HHHHHHHHhhhcccccccCCCccEEEEcCCcCCHHHHHHHHHHh-CCcEEEEeccCcceeecccCCCcccccccCCCccC
Confidence 999998765332 234788999999999999999999998887 78999999999998655443322223346789997
Q ss_pred -CCccEEEeCCCCCCCCCCCCccccccc-ccccccccccccccCcceeEEecCCcccCceeeeecceEEEeCCCeEEEEe
Q 010344 316 -MTTGFVILDELGVPYPDDQPCVGEVGL-FPLYLGATDRLLNADHEEVYFSGMPIYKGMHLRRHGDIIKRTVGGYIIVQG 393 (512)
Q Consensus 316 -~~~~~~i~d~~~~~~~~g~~~~Gel~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~i~g 393 (512)
++++++|+|++++++|.|+ .|||+| ++....+| +.+++.+...| ..++||+|||+|++++||+++++|
T Consensus 362 ~~~~~~~i~d~~~~~~p~G~--~GEl~i~G~~v~~GY--~~~p~~t~~~f------~~~~~yrTGDl~~~~~dG~l~~~G 431 (617)
T 3rg2_A 362 CPDDEVWVADAEGNPLPQGE--VGRLMTRGPYTFRGY--YKSPQHNASAF------DANGFYCSGDLISIDPEGYITVQG 431 (617)
T ss_dssp CTTCEEEEECTTSCBCCTTC--CEEEEEECSSSCSCC--TTCHHHHHHHB------CTTSCEEEEEEEEECTTSCEEEEE
T ss_pred CCCceEEEECCCCCCCCCCC--ceEEEecCccccchh--cCChhhhhhcc------CCCCceecCceEEEcCCceEEEEe
Confidence 7889999999999999999 699999 55555432 22444444444 345799999999999999999999
Q ss_pred ccCceeeecceecchHHHHHhhhcCCcceeeeeEEeeCCCCCCCceEEEEEEecCCCCCCcHHHHHHHHHHHHHh-ccCC
Q 010344 394 RADDTMNLGGIKTSSVEIERVCDGADESILETAAISVSPAGGGPEVLVICVVLKKGFTSQPVDKLKMIFSKAIQR-NLNP 472 (512)
Q Consensus 394 R~~d~i~~~G~~v~~~~iE~~l~~~~~~v~~~~v~~~~~~~~~~~~~~a~v~~~~~~~~~~~~~l~~~~~~~~~~-~l~~ 472 (512)
|.||+||++|++|+|.|||++|. +||+|.+++|++.+++..+ +.++++++..+. .+.+++.+++ .+ .|+.
T Consensus 432 R~dd~iki~G~ri~~~eIE~~l~-~~p~V~~a~vv~~~~~~~~-~~~~a~vv~~~~---~~~~~l~~~l----~~~~lp~ 502 (617)
T 3rg2_A 432 REKDQINRGGEKIAAEEIENLLL-RHPAVIYAALVSMEDELMG-EKSCAYLVVKEP---LRAVQVRRFL----REQGIAE 502 (617)
T ss_dssp ECSSEEEETTEEEEHHHHHHHHT-TSTTEEEEEEEEEEETTTE-EEEEEEEEESSC---CCHHHHHHHH----HTTTCCG
T ss_pred ecCCEEEECCEEeCHHHHHHHHH-hCCCeeEEEEEeccCcccC-eeEEEEEEeCCC---CCHHHHHHHH----HhCCCcc
Confidence 99999999999999999999998 8999999999999888777 899999998763 4555555554 45 6999
Q ss_pred ccceeeEEEecCCCCCCCchHHHHHHHHHHHhhh
Q 010344 473 LFKVSLVKIVLEFPRTASNKLLRRVLKDQLKHEL 506 (512)
Q Consensus 473 ~~~p~~i~~~~~iP~t~~GKi~r~~l~~~~~~~~ 506 (512)
|++|..|+++++||+|++||++|++|++.+.+..
T Consensus 503 ~~vP~~~~~v~~lP~t~~GKidR~~L~~~~~~~~ 536 (617)
T 3rg2_A 503 FKLPDRVECVDSLPLTAVGKVDKKQLRQWLASRA 536 (617)
T ss_dssp GGSCSEEEECSCCCBCTTSSBCHHHHHHHHHHHH
T ss_pred ccCCcEEEEecccCCCCCCCCcHHHHHHHHhccc
Confidence 9999999999999999999999999999887654
No 22
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0
Probab=100.00 E-value=1.1e-70 Score=561.34 Aligned_cols=463 Identities=15% Similarity=0.127 Sum_probs=279.1
Q ss_pred cHHHHHHHHhcc-CCCCCEEEEEcCCCHHHHHHHHHHHHhcceEeecCCCcCHHHHHHHHHhcCccEEEeccchhccCcc
Q 010344 2 SYRLVANALDTM-FSKGDAIAIDMPMTVHAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRK 80 (512)
Q Consensus 2 ~~~~~a~~L~~~-i~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~iv~~~~~~~~~~~ 80 (512)
.++++|++|++. +++||+|+++++|++++++++|||+++|++++|++|.++.+++.+++++++++++|++....
T Consensus 40 ~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~----- 114 (509)
T 3ivr_A 40 RAERLASGLLRDGVHTGDRVAILSQNCSEMIELIGAVALIGAILLPVNYRLNADEIAFVLGDGAPSVVVAGTDYR----- 114 (509)
T ss_dssp HHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHCEEEEEECSTTH-----
T ss_pred HHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHhCCEEEecCCCCCHHHHHHHHHhcCceEEEECcchh-----
Confidence 378999999999 99999999999999999999999999999999999999999999999999999999997532
Q ss_pred ccchhhHHhcCCCceEEeeccCCcccccccccCccHHHHhhccCCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEe
Q 010344 81 FPLYSKVAEAGPLKAVVLPVIGDDVGIQLRQQDVSWKDFLSCVDYHPGPKYYPPVYRPVDSVINILFSSGTTGEPKAIPW 160 (512)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~ 160 (512)
..+.......+....++.... ....+.++...... .........++++++++|||||||.||+|++
T Consensus 115 -~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~----~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~ 180 (509)
T 3ivr_A 115 -DIVAGVLPSLGGVKKAYAIGD---------GSGPFAPFKDLASD----TPFSAPEFGAADGFVIIHTAAVGGRPRGALI 180 (509)
T ss_dssp -HHHHHHGGGCSSCCEEEESSC---------CCSSCEEGGGTCCC----SCCCCCCCCTTSEEEEEEEEC--CCEEEEEE
T ss_pred -hhHHhhhcccCCceEEEEcCC---------CCcChhhHhhccCC----CCCCcCCCCccccEEEEeCCCCCCCCcEEEE
Confidence 221222222222222222111 11122222221111 1122344567899999999999999999999
Q ss_pred cCchhHHHHHHhhccccccCCcEEEecCCccchhhhHHHHhhhccCceEEEecCCCchhhHHHHHHhcCceEEecchHHH
Q 010344 161 TQLSPIRCAAEAWGHIDMKVGDVYCWPTNLGWVMGPIILFSSFLSGAALALYHGSPLERSFGKFVQDSGVSVLGTVPSLV 240 (512)
Q Consensus 161 s~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~l~~~~~t~l~~~P~~~ 240 (512)
+|+++.+.+.+....+++.++|++++.+|++|.+++...+.+++.|++.++.. ..++..+++.++++++|++.++|+++
T Consensus 181 sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~~~~g~~~~~~-~~~~~~~~~~i~~~~~t~~~~~p~~~ 259 (509)
T 3ivr_A 181 SQGNLLIAQSSLVDAWRLTEADVNLGMLPLFHVTGLGLMLTLQQAGGASVIAA-KFDPAQAARDIEAHKVTVMAEFAPML 259 (509)
T ss_dssp EHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECS-SCCHHHHHHHHHHHTCCEEEEETTHH
T ss_pred ehHHHHHHHHHHHHhhCCCCCcEEEEeCCCcchhHHHHHHHHHHhCCcEEEec-ccCHHHHHHHHHHHCCcEEEecHHHH
Confidence 99999999888888889999999999999999999988666666666666655 67889999999999999999999999
Q ss_pred HHHHccCCCCCCCcCceeEEEeecCCCCchhhHHHHHhhCCCCeeeecCCccccceecccCCCCCCcccccccccCCccE
Q 010344 241 KAWKNTNCLQGLDWTKIRSFASTGETSNVDDDLWLASKAYYKPIIECCGGTELASSYIQGSMLQPQAFGAFSTATMTTGF 320 (512)
Q Consensus 241 ~~l~~~~~~~~~~l~~l~~i~~~G~~l~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~G~p~~~~~~ 320 (512)
..|++.. ...+++++|.++.+|++ +..+.+.+.++++++++.||+||++.+.+..... ....++|.|++++++
T Consensus 260 ~~l~~~~--~~~~l~~lr~~~~~g~~---~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~--~~~~~~G~p~~~~~~ 332 (509)
T 3ivr_A 260 GNILDQA--APAQLASLRAVTGLDTP---ETIERFEATCPNATFWATFGQSETSGLSTFAPYR--DRPKSAGRPLFWRTV 332 (509)
T ss_dssp HHHHHHC--CGGGGTTCCEEEEECCH---HHHHHHHHHCTTCEEEEEEEEGGGTEEEEEEEGG--GSTTSCCEECTTCEE
T ss_pred HHHHhcc--cccchhhhheecccCCh---HHHHHHHHhcCCCeEEcccCccccccccccCccc--cCCCcccccCCCcEE
Confidence 9998875 45567899999999987 7788888888889999999999999866544332 223459999999999
Q ss_pred EEeCCCCCCCCCCCCccccccc-ccccccccccccccCcceeEEecCCcccCceeeeecceEEEeCCCeEEEEecc--Cc
Q 010344 321 VILDELGVPYPDDQPCVGEVGL-FPLYLGATDRLLNADHEEVYFSGMPIYKGMHLRRHGDIIKRTVGGYIIVQGRA--DD 397 (512)
Q Consensus 321 ~i~d~~~~~~~~g~~~~Gel~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~i~gR~--~d 397 (512)
+|+|+++++++.|+ .|||++ ++..+.+| +.+++.+...| .++||+|||+|++++||+++++||. +|
T Consensus 333 ~i~d~~~~~~~~g~--~GEl~v~g~~~~~gY--~~~~~~t~~~f-------~~g~~~TGDl~~~~~dG~l~~~GR~d~~d 401 (509)
T 3ivr_A 333 AVVDAEDRPLPPGE--VGEIVLRGPTVFKGY--WNNAAATQHAF-------RNGWHHTGDMGRFDADGYLFYAGRAPEKE 401 (509)
T ss_dssp EEECTTSCBCCTTC--CEEEEEESTTSCCEE--TTCHHHHHHHT-------GGGSEEEEEEEEECTTSCEEEEEEC----
T ss_pred EEECCCCCCCCCCC--ceEEEEecCCccccc--cCCHHHhHHHh-------hcCCcccccEEEECCCceEEEeCCCCcce
Confidence 99999999999999 699999 55554432 22333333323 2579999999999999999999999 99
Q ss_pred eeeecceecchHHHHHhhhcCCcceeeeeEEeeCCCCCCCceEEEEEEecCCCCCCcHHHHHHHHHHHHHhccCCcccee
Q 010344 398 TMNLGGIKTSSVEIERVCDGADESILETAAISVSPAGGGPEVLVICVVLKKGFTSQPVDKLKMIFSKAIQRNLNPLFKVS 477 (512)
Q Consensus 398 ~i~~~G~~v~~~~iE~~l~~~~~~v~~~~v~~~~~~~~~~~~~~a~v~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~p~ 477 (512)
+||++|++|+|.+||++|. +||+|.+++|++.+++..+ +.++++|++.++.. .+.+++.+ +++++|+.|++|+
T Consensus 402 ~ik~~G~~v~p~eiE~~l~-~~p~V~~a~vv~~~~~~~~-~~~~a~v~~~~~~~-~~~~~l~~----~l~~~L~~~~~P~ 474 (509)
T 3ivr_A 402 LIKTGGENVYPAEVEGALK-QHPAIADAVVIGVPDPQWS-EAIKAVCVCKPGES-IAADALAE----FVASLIARYKKPK 474 (509)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred eEEECCEEECHHHHHHHHH-hCCCceeEEEEeccccccC-cEEEEEEEeCCCCC-CCHHHHHH----HHHhhCcccCCCc
Confidence 9999999999999999998 8999999999999998888 89999999887654 55555544 4557788999999
Q ss_pred eEEEecCCCCCCCchHHHHHHHHHHHhhhhcc
Q 010344 478 LVKIVLEFPRTASNKLLRRVLKDQLKHELSVR 509 (512)
Q Consensus 478 ~i~~~~~iP~t~~GKi~r~~l~~~~~~~~~~~ 509 (512)
.|+++++||+|++||++|++|++++++.-...
T Consensus 475 ~i~~v~~lP~t~~GKidr~~Lr~~~~~~~~~~ 506 (509)
T 3ivr_A 475 HVVFVEALPKDAKGAIDRAAVKTAHGQEGHHH 506 (509)
T ss_dssp --------------------------------
T ss_pred EEEEecCCCCCCCCCccHHHHHHHHhhccccc
Confidence 99999999999999999999999998765443
No 23
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*
Probab=100.00 E-value=2.2e-69 Score=560.91 Aligned_cols=446 Identities=19% Similarity=0.163 Sum_probs=355.5
Q ss_pred cHHHHHHHHhcc-CCCCCEEEEEcCCCHHHHHHHHHHHHhcceEeecCCCcCHHHHHHHHHhcCccEEEeccchhccCcc
Q 010344 2 SYRLVANALDTM-FSKGDAIAIDMPMTVHAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRK 80 (512)
Q Consensus 2 ~~~~~a~~L~~~-i~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~iv~~~~~~~~~~~ 80 (512)
.++++|++|++. +++||+|+++++|++++++++|||+++|++++|++|.++.+++.+++++++++++++++....
T Consensus 61 ~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~vva~lailkaGa~~vpld~~~p~~~l~~il~~~~~~~vl~~~~~~~---- 136 (620)
T 4dg8_A 61 SAEQLSDYLLEHYPQPGVCLGVYGEYSRESITCLLAILLSGHHYLYIDLKQPAAWNAELCRQVDCRLILDCSTTPT---- 136 (620)
T ss_dssp HHHHHHHHHHHHCCSSCCEEEEESSSCHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTEEEEEECCSSCC----
T ss_pred HHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEEeeCccChHHHHHHHHHhCCCcEEEecCcccc----
Confidence 478999999999 999999999999999999999999999999999999999999999999999999997653210
Q ss_pred ccchhhHHhcCCCceEEeeccCCcccccccccCccHHHHhhccCCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEe
Q 010344 81 FPLYSKVAEAGPLKAVVLPVIGDDVGIQLRQQDVSWKDFLSCVDYHPGPKYYPPVYRPVDSVINILFSSGTTGEPKAIPW 160 (512)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~ 160 (512)
.... ..... +... .. ...........++++++++|||||||.||||++
T Consensus 137 --~~~~------~~~~~------------------~~~~----~~--~~~~~~~~~~~~~d~a~iiyTSGSTG~PKgV~~ 184 (620)
T 4dg8_A 137 --PANG------LPCVP------------------VRHL----PA--APASVARPCFAADQIAYINFSSGTTGRPKAIAC 184 (620)
T ss_dssp --CCTT------SCEEE------------------GGGC----CC--CCCCSSCCCCCTTSEEEEEEEBSSSSSCEEEEE
T ss_pred --cccC------Cceee------------------eccC----Cc--CCccccCCCCCCCCeEEEEECCCccccCeEEEE
Confidence 0000 00000 0000 00 011112223457899999999999999999999
Q ss_pred cCchhHHHHHHhhccccccCCcEEEecCCccchhhhHHHHhhhccCceEEEecC-CCchhhHHHHHHhcCceEEecchHH
Q 010344 161 TQLSPIRCAAEAWGHIDMKVGDVYCWPTNLGWVMGPIILFSSFLSGAALALYHG-SPLERSFGKFVQDSGVSVLGTVPSL 239 (512)
Q Consensus 161 s~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~G~~~~~~~~-~~~~~~~~~~l~~~~~t~l~~~P~~ 239 (512)
+|+++.+.+.. ...+++.+++++++..|++|..+++.++.+++.|+++++.+. ..++..+++.++++++|+++++|++
T Consensus 185 th~~l~~~~~~-~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~ 263 (620)
T 4dg8_A 185 THAGITRLCLG-QSFLAFAPQMRFLVNSPLSFDAATLEIWGALLNGGCCVLNDLGPLDPGVLRQLIGERGADSAWLTASL 263 (620)
T ss_dssp EHHHHHHHHSS-CGGGTTCTTCEEEECSCTTSTHHHHHHHHHHTTTCEEEECCSSSCCHHHHHHHHHTTCCCEEEEEHHH
T ss_pred chHHHHHHHHH-HHhhCCCCCCEEEEECccCHHHHHHHHHHHHhcCCEEEeCccccCCHHHHHHHHHHhCCcEEEccHHH
Confidence 99998776554 456788999999999999999999889999999999999742 4578899999999999999999999
Q ss_pred HHHHHccCCCCCCCcCceeEEEeecCCCCchhhHHHHHhhCCCCeeeecCCccccceecccCCC---CCCcccccccccC
Q 010344 240 VKAWKNTNCLQGLDWTKIRSFASTGETSNVDDDLWLASKAYYKPIIECCGGTELASSYIQGSML---QPQAFGAFSTATM 316 (512)
Q Consensus 240 ~~~l~~~~~~~~~~l~~l~~i~~~G~~l~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~---~~~~~~~~G~p~~ 316 (512)
+..|++.. ..+++++|.+++|||+++++..+.+.+.++++++++.||+||++...+..... ......++|+|++
T Consensus 264 ~~~l~~~~---~~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~iG~p~~ 340 (620)
T 4dg8_A 264 FNTLVDLD---PDCLGGLRQLLTGGDILSVPHVRRALLRHPRLHLVNGYGPTENTTFTCCHVVTDDDLEEDDIPIGKAIA 340 (620)
T ss_dssp HHHHHHHC---GGGGTTCSEEEEESSCCCHHHHHHHHHHCTTCEEEEEECCGGGCSCSEEEECCTGGGGSSSCCCBEECT
T ss_pred HHHHHhcC---hhhCCCccEEEEEeCcCCHHHHHHHHHhCCCeEEEeeEchhhhhhheEEEeccccccCCCCCCceeccc
Confidence 99998653 34678999999999999989888888888789999999999998765433221 1234568999999
Q ss_pred CccEEEeCCCCCC-CCCCCCccccccc-ccccccccccccccCcceeEEecCCcccCc--eeeeecceEEEeCCCeEEEE
Q 010344 317 TTGFVILDELGVP-YPDDQPCVGEVGL-FPLYLGATDRLLNADHEEVYFSGMPIYKGM--HLRRHGDIIKRTVGGYIIVQ 392 (512)
Q Consensus 317 ~~~~~i~d~~~~~-~~~g~~~~Gel~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~TGD~~~~~~~g~l~i~ 392 (512)
+++++|+|+++++ ++.|+ .|||+| +++...+| +.+++.+...|..++. .+. +||+|||+|++++||+++++
T Consensus 341 ~~~~~i~d~~~~~~~~~g~--~GEl~i~G~~v~~GY--~~~p~~t~~~f~~~p~-~~~~~~~yrTGDl~~~~~dG~l~~~ 415 (620)
T 4dg8_A 341 GTAVLLLDEHGQEIAEPDR--AGEIVAFGAGLAQGY--RNDAARTRASFVELPY-RGRLLRAYRTGDRARYDEQGRLRFI 415 (620)
T ss_dssp TEEEEEECTTSCBCCSSSC--CEEEEEEETTCCSEE--TTCHHHHHHHEEEEEE-TTEEEEEEEEEEEEEECTTSCEEEE
T ss_pred CcEEEEECccCCCCCCCCC--ceEEEEecccccccc--CCChhhhhhhhccCCC-CCCCceEEeCCCEEEECCCCeEEEE
Confidence 9999999999887 78998 699999 66665533 3345555555655442 233 79999999999999999999
Q ss_pred eccCceeeecceecchHHHHHhhhcCCcceeeeeEEeeCCCCCCCceEEEEEEecCCCCCCcHHHHHHHHHHHHHhccCC
Q 010344 393 GRADDTMNLGGIKTSSVEIERVCDGADESILETAAISVSPAGGGPEVLVICVVLKKGFTSQPVDKLKMIFSKAIQRNLNP 472 (512)
Q Consensus 393 gR~~d~i~~~G~~v~~~~iE~~l~~~~~~v~~~~v~~~~~~~~~~~~~~a~v~~~~~~~~~~~~~l~~~~~~~~~~~l~~ 472 (512)
||.||+||++|++|+|.|||++|. +||+|.+++|++.++...+ .++++++.... . +++.+.++|+.
T Consensus 416 GR~dd~Ik~~G~ri~~~eIE~~l~-~~p~V~~a~Vv~~~~~~~~--~lv~~~~~~~~---~--------~~~~l~~~Lp~ 481 (620)
T 4dg8_A 416 GRGDGQVKLNGYRLDLPALEQRFR-RQPGILDCALLVRERNGVK--QLLCAWTGKAD---A--------SPQALLRQLPT 481 (620)
T ss_dssp ECSSSEEEETTEEEEHHHHHHHHH-TSTTEEEEEEEEEEETTEE--EEEEEEEECTT---C--------CCHHHHHHSCG
T ss_pred ccCCCEEEECCEEcCHHHHHHHHH-hCCCccEEEEEEEeCCCce--EEEEEEecChH---H--------HHHHHHHhChh
Confidence 999999999999999999999998 8999999999998776443 45555543322 1 12334467899
Q ss_pred ccceeeEEEecCCCCCCCchHHHHHHHHHHHhhh
Q 010344 473 LFKVSLVKIVLEFPRTASNKLLRRVLKDQLKHEL 506 (512)
Q Consensus 473 ~~~p~~i~~~~~iP~t~~GKi~r~~l~~~~~~~~ 506 (512)
|++|..|+++++||+|++||++|++|++++.+..
T Consensus 482 y~~P~~~~~v~~lP~t~~GKidR~~L~~~~~~~~ 515 (620)
T 4dg8_A 482 WQRPHACVRVEALPLTAHGKLDRAALLRRLEEPL 515 (620)
T ss_dssp GGSCSEEEECSSCCCC----CCHHHHHHHTCSCC
T ss_pred hcCCcEEEEECcCCCCcccCHhHHHHhhcccccc
Confidence 9999999999999999999999999998876543
No 24
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}
Probab=100.00 E-value=5.8e-70 Score=596.27 Aligned_cols=477 Identities=19% Similarity=0.208 Sum_probs=299.8
Q ss_pred cHHHHHHHHhcc-CCCCCEEEEEcCCCHHHHHHHHHHHHhcceEeecCCCcCHHHHHHHHHhcCccEEEeccchhccCcc
Q 010344 2 SYRLVANALDTM-FSKGDAIAIDMPMTVHAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRK 80 (512)
Q Consensus 2 ~~~~~a~~L~~~-i~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~iv~~~~~~~~~~~ 80 (512)
.++++|++|++. +++||+|+|+++|++++++++|||+++|++++|++|.++.+++.+++++++++++|+++..
T Consensus 97 ~~~~lA~~L~~~Gv~~gd~V~i~~~ns~e~~v~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~------ 170 (979)
T 3tsy_A 97 ISRQIAANFHKLGVNQNDVVMLLLPNCPEFVLSFLAASFRGATATAANPFFTPAEIAKQAKASNTKLIITEARY------ 170 (979)
T ss_dssp HHHHHHHHHHHTTCCTTCEEEEECSSCHHHHHHHHHHHHHTCEEEEECTTSCHHHHHHHHHHHTEEEEEECSTT------
T ss_pred HHHHHHHHHHHcCCCCcCEEEEEeCCCHHHHHHHHHHHHcCCEEEeeCCCCCHHHHHHHHHHcCCeEEEEChHH------
Confidence 378999999999 9999999999999999999999999999999999999999999999999999999999853
Q ss_pred ccchhhHHhcCCCceEEeeccCCcccccccccCccHHHHhhccCCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEe
Q 010344 81 FPLYSKVAEAGPLKAVVLPVIGDDVGIQLRQQDVSWKDFLSCVDYHPGPKYYPPVYRPVDSVINILFSSGTTGEPKAIPW 160 (512)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~ 160 (512)
.+.+..+........+.++.. .......+...|.++...... .....+.....++++++|+|||||||.||+|++
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~ 245 (979)
T 3tsy_A 171 VDKIKPLQNDDGVVIVCIDDN---ESVPIPEGCLRFTELTQSTTE--ASEVIDSVEISPDDVVALPYSSGTTGLPKGVML 245 (979)
T ss_dssp TTTSHHHHHTSCCEEEECCCC---TTSCCCTTEEEGGGTSSCCSG--GGGGSCCSCCCTTSEEECCBCCCSSSSCCBEEE
T ss_pred HHHHHHHhhcCCceEEEeCCc---ccccCCcccccHHHHhhcccc--ccccCCcCCCCccceEEEEeCCCCCCCCeEEEe
Confidence 234444444333333333211 111112233455555443221 111122334568899999999999999999999
Q ss_pred cCchhHHHHHHhhc----cccccCCcEEEecCCccchhhhHH-HHhhhccCceEEEecCCCchhhHHHHHHhcCceEEec
Q 010344 161 TQLSPIRCAAEAWG----HIDMKVGDVYCWPTNLGWVMGPII-LFSSFLSGAALALYHGSPLERSFGKFVQDSGVSVLGT 235 (512)
Q Consensus 161 s~~~~~~~~~~~~~----~~~~~~~~~~~~~~p~~~~~~~~~-~~~~l~~G~~~~~~~~~~~~~~~~~~l~~~~~t~l~~ 235 (512)
+|+++.+.+..... .+++.++|++++.+|++|.+++.. ++.++..|+++++.+ ..++..+++.++++++|++.+
T Consensus 246 sh~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~i~~~~~t~~~~ 324 (979)
T 3tsy_A 246 THKGLVTSVAQQVDGENPNLYFHSDDVILCVLPMFHIYALNSIMLCGLRVGAAILIMP-KFEINLLLELIQRCKVTVAPM 324 (979)
T ss_dssp EHHHHHHHHHHHHCSSSCSSCCCSSCEEEECSCSSSHHHHHHTHHHHHHHTCEEEECS-SCCHHHHHHHHHHHTCCEEEE
T ss_pred chHHHHHHHHHHHHhhcccccCCCCCEEEEECchHHHHHHHHHHHHHHhcCcEEEEeC-CCCHHHHHHHHHHhCCeEEEc
Confidence 99999888776543 356789999999999999999865 788999999999976 567899999999999999999
Q ss_pred chHHHHHHHccCCCCCCCcCceeEEEeecCCCCchhhHHHHHhhCCCCeeeecCCccccceecccC----CCCCCccccc
Q 010344 236 VPSLVKAWKNTNCLQGLDWTKIRSFASTGETSNVDDDLWLASKAYYKPIIECCGGTELASSYIQGS----MLQPQAFGAF 311 (512)
Q Consensus 236 ~P~~~~~l~~~~~~~~~~l~~l~~i~~~G~~l~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~----~~~~~~~~~~ 311 (512)
+|+++..|++.......+++++|.+++||+++++++.+++.+.++++++++.||+||++.+.+.+. .......+++
T Consensus 325 ~P~~~~~l~~~~~~~~~~l~~lr~~~~gg~~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~ 404 (979)
T 3tsy_A 325 VPPIVLAIAKSSETEKYDLSSIRVVKSGAAPLGKELEDAVNAKFPNAKLGQGYGMTEAGPVLAMSLGFAKEPFPVKSGAC 404 (979)
T ss_dssp CHHHHHHHHHCGGGGTSCCTTCCEEEESSCCCCSSHHHHHHHHCTTCEEEECEECGGGCSEEEECGGGSSSCCCCCTTCC
T ss_pred HHHHHHHHHhCccccCCCccceEEEEEcCCCCCHHHHHHHHHHCCCCeEEeeechhhhhHHHHhCCCCCCCccccCCCCc
Confidence 999999999887777788999999999999999999999999998899999999999987654432 2223456789
Q ss_pred ccccCCccEEEeC-CCCCCCCCCCCccccccc-ccccccccccccccCcceeEEecCCcccCceeeeecceEEEeCCCeE
Q 010344 312 STATMTTGFVILD-ELGVPYPDDQPCVGEVGL-FPLYLGATDRLLNADHEEVYFSGMPIYKGMHLRRHGDIIKRTVGGYI 389 (512)
Q Consensus 312 G~p~~~~~~~i~d-~~~~~~~~g~~~~Gel~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l 389 (512)
|.|+++++++|+| +++++++.|+ .|||+| ++..+.+| +.+++.+...| ..++||+|||+|++++||++
T Consensus 405 G~p~~~~~~~i~d~~~~~~~~~g~--~GEl~i~g~~v~~GY--~~~p~~t~~~f------~~~g~~~TGDl~~~~~dG~l 474 (979)
T 3tsy_A 405 GTVVRNAEMKIVDPDTGDSLSRNQ--PGEICIRGHQIMKGY--LNNPAATAETI------DKDGWLHTGDIGLIDDDDEL 474 (979)
T ss_dssp CEECSSCEEEEECTTSCCBCCTTC--CEEEEEESTTSCSEE--TTCHHHHHHHB------CTTSCEEEEEEEEECTTSCE
T ss_pred CcccCCcEEEEEeCCCCCCCCCCC--ccEEEEECCCccccc--cCChhhhhhhc------cCCCcEEcCCEEEEcCCceE
Confidence 9999999999999 5689999999 699999 55555432 22333333333 35679999999999999999
Q ss_pred EEEeccCceeeecceecchHHHHHhhhcCCcceeeeeEEeeCCCCCCCceEEEEEEecCCCCCCcHHHHHHHHHHHHHhc
Q 010344 390 IVQGRADDTMNLGGIKTSSVEIERVCDGADESILETAAISVSPAGGGPEVLVICVVLKKGFTSQPVDKLKMIFSKAIQRN 469 (512)
Q Consensus 390 ~i~gR~~d~i~~~G~~v~~~~iE~~l~~~~~~v~~~~v~~~~~~~~~~~~~~a~v~~~~~~~~~~~~~l~~~~~~~~~~~ 469 (512)
+|+||.||+||++|++|+|.|||++|. .||+|.+++|++.+++..+ +.++++|+..++.. .+.+++. ++++++
T Consensus 475 ~~~GR~dd~ik~~G~~v~~~eIE~~l~-~~p~V~~~~Vv~~~~~~~g-~~~~a~vv~~~~~~-~~~~~l~----~~l~~~ 547 (979)
T 3tsy_A 475 FIVDRLKELIKYKGFQVAPAELEALLI-GHPDITDVAVVAMKEEAAG-EVPVAFVVKSKDSE-LSEDDVK----QFVSKQ 547 (979)
T ss_dssp EEEEESCC------------------------------------------------------------------------
T ss_pred EEecCCCCEEEECCEEECHHHHHHHHH-hCCCcceEEEEEecccCCC-cEEEEEEEECCCCC-CCHHHHH----HHHHHh
Confidence 999999999999999999999999998 8999999999999988888 89999999876544 4555554 445578
Q ss_pred cCCccceeeEEEecCCCCCCCchHHHHHHHHHHHhhhh
Q 010344 470 LNPLFKVSLVKIVLEFPRTASNKLLRRVLKDQLKHELS 507 (512)
Q Consensus 470 l~~~~~p~~i~~~~~iP~t~~GKi~r~~l~~~~~~~~~ 507 (512)
|+.|++|..|+++++||+|++||++|++|++++.+.+.
T Consensus 548 l~~~~~p~~i~~v~~lP~t~~GKi~r~~L~~~~~~~~~ 585 (979)
T 3tsy_A 548 VVFYKRINKVFFTESIPKAPSGKILRKDLRAKLANGLG 585 (979)
T ss_dssp --------------------------------------
T ss_pred cccccCCeEEEEeCCcCcCCCCCeeHHHHHHHHHhhcC
Confidence 88999999999999999999999999999999887544
No 25
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=100.00 E-value=6.8e-68 Score=539.89 Aligned_cols=461 Identities=16% Similarity=0.174 Sum_probs=340.0
Q ss_pred cHHHHHHHHhccCCCCCEEEEEcCCCHHHHHHHHHHHHhcceEeecCCCcCHHHHHHHHHhcCccEEEeccchhccCccc
Q 010344 2 SYRLVANALDTMFSKGDAIAIDMPMTVHAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKF 81 (512)
Q Consensus 2 ~~~~~a~~L~~~i~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~iv~~~~~~~~~~~~ 81 (512)
.++++|++|++. +||+|+++++|++++++++|||+++|++++|+++.++.+++.+++++++++++|++.........
T Consensus 35 ~~~~lA~~L~~~--~gd~V~i~~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~- 111 (501)
T 3ipl_A 35 EASLLAKRLKAY--QQSRVGLYIDNSIQSIILIHACWLANIEIAMINTRLTPNEMTNQMRSIDVQLIFCTLPLELRGFQ- 111 (501)
T ss_dssp HHHHHHHHHHTT--CCSEEEEECCSSHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHTTCCEEEESSCCCCTTSE-
T ss_pred HHHHHHHHHHHc--CCCEEEEEcCCCHHHHHHHHHHHHcCCEEEecCccCCHHHHHHHHHhcCCCEEEEcccccccccc-
Confidence 368899999887 99999999999999999999999999999999999999999999999999999999754321110
Q ss_pred cchhhHHhcCCCceEEeec-cCCcccccccccCccHHHHhhccCCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEe
Q 010344 82 PLYSKVAEAGPLKAVVLPV-IGDDVGIQLRQQDVSWKDFLSCVDYHPGPKYYPPVYRPVDSVINILFSSGTTGEPKAIPW 160 (512)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~ 160 (512)
.............. ...... ......+......................++++++++|||||||.||+|++
T Consensus 112 -----~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~ 183 (501)
T 3ipl_A 112 -----IVSLDDIEFAGRDITTNGLLD---NTMGIQYDTSNETVVPKESPSNILNTSFNLDDIASIMFTSGTTGPQKAVPQ 183 (501)
T ss_dssp -----EEETTC-----------------------------------CCHHHHTCCCCCTTSEEEEEECCTTTSCCCEEEE
T ss_pred -----ccccccceeeeeecccccccc---cccccccccchhhccccCCcccccccCCCCCCeEEEEECCCCCCCCcEEEE
Confidence 00000000000000 000000 000000100000000000000011223467899999999999999999999
Q ss_pred cCchhHHHHHHhhccccccCCcEEEecCCccchhhhHHHHhhhccCceEEEecCCCchhhHHHHHHhcCceEEecchHHH
Q 010344 161 TQLSPIRCAAEAWGHIDMKVGDVYCWPTNLGWVMGPIILFSSFLSGAALALYHGSPLERSFGKFVQDSGVSVLGTVPSLV 240 (512)
Q Consensus 161 s~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~l~~~~~t~l~~~P~~~ 240 (512)
||+++.+.+......+++.++|++++..|++|.+++..++.+++.|+++++.+ ..+++.+++.++++++|+++++|+++
T Consensus 184 th~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~ 262 (501)
T 3ipl_A 184 TFRNHYASAIGCKESLGFDRDTNWLSVLPIYHISGLSVLLRAVIEGFTVRIVD-KFNAEQILTMIKNERITHISLVPQTL 262 (501)
T ss_dssp EHHHHHHHHHHHHHHTCCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECS-SCCHHHHHHHHHHSCCCEEEECHHHH
T ss_pred eHHHHHHHHHHHHHhhCCCccCEEEEeCcHHHHHHHHHHHHHHHcCceEEeCC-CCCHHHHHHHHHHcCCcEEEchHHHH
Confidence 99999999888888889999999999999999999988899999999999976 56789999999999999999999999
Q ss_pred HHHHccCCCCCCCcCceeEEEeecCCCCchhhHHHHHhhCCCCeeeecCCccccceecccCCC-CCCcccccccccCCcc
Q 010344 241 KAWKNTNCLQGLDWTKIRSFASTGETSNVDDDLWLASKAYYKPIIECCGGTELASSYIQGSML-QPQAFGAFSTATMTTG 319 (512)
Q Consensus 241 ~~l~~~~~~~~~~l~~l~~i~~~G~~l~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~-~~~~~~~~G~p~~~~~ 319 (512)
..|++...... .++|.+++||+++++++.+.+.+ + ++++++.||+||+++.++..... .....+++|.|+++++
T Consensus 263 ~~l~~~~~~~~---~~lr~i~~gG~~l~~~~~~~~~~-~-~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~G~p~~~~~ 337 (501)
T 3ipl_A 263 NWLMQQGLHEP---YNLQKILLGGAKLSATMIETALQ-Y-NLPIYNSFGMTETCSQFLTATPEMLHARPDTVGMPSANVD 337 (501)
T ss_dssp HHHHHHTCCSC---TTCCEEEECSSCCCHHHHHHHHH-T-TCCEEEEEEEGGGTEEEEEECHHHHHHCTTCCBEECTTCE
T ss_pred HHHHhcCCCCc---CcccEEEEeCCCCCHHHHHHHHH-h-CCCEeccccccccccceeecCccccccCCCCCCCCCCCcE
Confidence 99988754332 28999999999999999998876 3 78999999999998755443221 1234578999999999
Q ss_pred EEEeCCCCCCCCCCCCccccccc-ccccccccccccccCcceeEEecCCcccCceeeeecceEEEeCCCeEEEEeccCce
Q 010344 320 FVILDELGVPYPDDQPCVGEVGL-FPLYLGATDRLLNADHEEVYFSGMPIYKGMHLRRHGDIIKRTVGGYIIVQGRADDT 398 (512)
Q Consensus 320 ~~i~d~~~~~~~~g~~~~Gel~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~i~gR~~d~ 398 (512)
++|+|++ .|+ .|||++ ++..+.+| +.+++.+.. | .++||+|||+|++++||+++++||.||+
T Consensus 338 ~~i~d~~-----~~~--~GEl~v~g~~~~~gY--~~~~~~t~~-~-------~~g~~~TGDl~~~~~~G~l~~~GR~dd~ 400 (501)
T 3ipl_A 338 VKIKNPN-----KEG--HGELMIKGANVMNGY--LYPTDLTGT-F-------ENGYFNTGDIAEIDHEGYVMIYDRRKDL 400 (501)
T ss_dssp EEEESCC-----SSC--CEEEEEESTTSCSCC--SBSTTCCCS-E-------ETTEEEEEEEEEECTTSCEEEEEECCCC
T ss_pred EEEecCC-----CCC--ccEEEEeccchhhhh--CcChhhcch-h-------cCCceecCCEEEEcCCCeEEEEccccce
Confidence 9999975 344 599999 55555432 223333333 3 2479999999999999999999999999
Q ss_pred eeecceecchHHHHHhhhcCCcceeeeeEEeeCCCCCCCceEEEEEEecCCCCCCcHHHHHHHHHHHHHhccCCccceee
Q 010344 399 MNLGGIKTSSVEIERVCDGADESILETAAISVSPAGGGPEVLVICVVLKKGFTSQPVDKLKMIFSKAIQRNLNPLFKVSL 478 (512)
Q Consensus 399 i~~~G~~v~~~~iE~~l~~~~~~v~~~~v~~~~~~~~~~~~~~a~v~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~p~~ 478 (512)
||++|++|+|.+||++|. +||+|.+++|++.+++..+ +.++++++.... .+.+++.+++ +++|+.|++|..
T Consensus 401 ik~~G~~v~p~eiE~~l~-~~p~V~~~~vv~~~~~~~g-~~~~a~v~~~~~---~~~~~l~~~l----~~~L~~~~~P~~ 471 (501)
T 3ipl_A 401 IISGGENIYPYQIETVAK-QFPGISDAVCVGHPDDTWG-QVPKLYFVSESD---ISKAQLIAYL----SKHLAKYKVPKH 471 (501)
T ss_dssp EECSSCEECHHHHHHHHT-TSTTEEEEEEEEEEETTTE-EEEEEEEEESSC---CCHHHHHHHH----HHHSCGGGSCSE
T ss_pred EEECCEEECHHHHHHHHH-hCCCccEEEEEEEecccCC-ceEEEEEEeCCC---CCHHHHHHHH----HhhCccccCCCE
Confidence 999999999999999998 9999999999999998888 889999887543 5555555554 577899999999
Q ss_pred EEEecCCCCCCCchHHHHHHHHHHHhh
Q 010344 479 VKIVLEFPRTASNKLLRRVLKDQLKHE 505 (512)
Q Consensus 479 i~~~~~iP~t~~GKi~r~~l~~~~~~~ 505 (512)
|+++++||+|++||++|++|++...++
T Consensus 472 i~~v~~lP~t~~GKi~R~~l~~~~~~~ 498 (501)
T 3ipl_A 472 FEKVDTLPYTSTGKLQRNKLYREGHHH 498 (501)
T ss_dssp EEECSSCC-------------------
T ss_pred EEEecccCCCCCCCEeHHHHhhccccc
Confidence 999999999999999999999987754
No 26
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*
Probab=100.00 E-value=1.8e-68 Score=543.17 Aligned_cols=431 Identities=19% Similarity=0.202 Sum_probs=333.1
Q ss_pred CCCCCEEEEEcCCCHHHHHHHHHHHHhcceEeecCCCcCHHHHHHHHHhcCccEEEeccchhccCccccchhhHHhcCCC
Q 010344 14 FSKGDAIAIDMPMTVHAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVAEAGPL 93 (512)
Q Consensus 14 i~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~~ 93 (512)
+..||+|+++++|++++++++|||+++|++++|++|.++.+++.+++++++++++|++.... ...... ..
T Consensus 65 L~~~~~V~i~~~~~~~~~~~~la~~~~Ga~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~--------~~~~~~--~~ 134 (505)
T 3nyq_A 65 IGGAGRVAVWATPAMETGVAVVAALLAGVAAVPLNPKSGDKELAHILSDSAPSLVLAPPDAE--------LPPALG--AL 134 (505)
T ss_dssp CC---CEEEECCSSHHHHHHHHHHHHHTCCEEEECTTCCHHHHHHHHHHHCCSEEEECTTCC--------CCGGGT--TS
T ss_pred ccCCCEEEEEcCCCHHHHHHHHHHHHhCCEEEEcCCCCCHHHHHHHHHHCCCCEEEECCccc--------cchhhc--cc
Confidence 66799999999999999999999999999999999999999999999999999999986410 000000 00
Q ss_pred ceEEeeccCCcccccccccCccHHHHhhccCCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecCchhHHHHHHhh
Q 010344 94 KAVVLPVIGDDVGIQLRQQDVSWKDFLSCVDYHPGPKYYPPVYRPVDSVINILFSSGTTGEPKAIPWTQLSPIRCAAEAW 173 (512)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~~~~~~~~~~ 173 (512)
....+. . . .....+.....++++++++|||||||.||+|+++|+++.+.+....
T Consensus 135 ~~~~~~--~---------------------~---~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~ 188 (505)
T 3nyq_A 135 ERVDVD--V---------------------R---ARGAVPEDGADDGDPALVVYTSGTTGPPKGAVIPRRALATTLDALA 188 (505)
T ss_dssp EEEECC--T---------------------T---CCCCCCCCCCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHHHHHHH
T ss_pred cccccc--c---------------------c---cccCCCCCCCCCCCeEEEEeCCCCcCCCCeEEEeHHHHHHHHHHHH
Confidence 011110 0 0 0011122334678999999999999999999999999999998888
Q ss_pred ccccccCCcEEEecCCccchhhhHH-HHhhhccCceEEEecCCCchhhHHHHHHhcCceEEecchHHHHHHHccCCC---
Q 010344 174 GHIDMKVGDVYCWPTNLGWVMGPII-LFSSFLSGAALALYHGSPLERSFGKFVQDSGVSVLGTVPSLVKAWKNTNCL--- 249 (512)
Q Consensus 174 ~~~~~~~~~~~~~~~p~~~~~~~~~-~~~~l~~G~~~~~~~~~~~~~~~~~~l~~~~~t~l~~~P~~~~~l~~~~~~--- 249 (512)
..+++.++|++++.+|++|..++.. ++.++..|+++++.+ ..++..+++.+ ++++|+++++|+++..|++....
T Consensus 189 ~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i-~~~~t~~~~~P~~~~~l~~~~~~~~~ 266 (505)
T 3nyq_A 189 DAWQWTGEDVLVQGLPLFHVHGLVLGILGPLRRGGSVRHLG-RFSTEGAAREL-NDGATMLFGVPTMYHRIAETLPADPE 266 (505)
T ss_dssp HHHTCCTTCEEEECCCTTSHHHHTTTTHHHHHHTCEEEECS-SCCHHHHHHHH-TTTCCEEEECHHHHHHHHHHGGGCHH
T ss_pred HHhCCCCCcEEEEeccHHHHHHHHHHHHHHHhcCCEEEECC-CCChHHHHHHH-hhCCeEEEehHHHHHHHHHhhhcCch
Confidence 8889999999999999999999864 889999999999875 56778888988 88999999999999999874322
Q ss_pred CCCCcCceeEEEeecCCCCchhhHHHHHhhCCCCeeeecCCccccceecccCCCCCCcccccccccCCccEEEeCCCCCC
Q 010344 250 QGLDWTKIRSFASTGETSNVDDDLWLASKAYYKPIIECCGGTELASSYIQGSMLQPQAFGAFSTATMTTGFVILDELGVP 329 (512)
Q Consensus 250 ~~~~l~~l~~i~~~G~~l~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~~~ 329 (512)
...+++++|.+++||+++++++.+.+.+.+ +.++++.||+||++...+... ......+++|+|+++++++|+|++|++
T Consensus 267 ~~~~l~~lr~i~~gg~~l~~~~~~~~~~~~-~~~~~~~YG~TE~~~~~~~~~-~~~~~~~~vG~p~~~~~~~i~d~~g~~ 344 (505)
T 3nyq_A 267 LAKALAGARLLVSGSAALPVHDHERIAAAT-GRRVIERYGMTETLMNTSVRA-DGEPRAGTVGVPLPGVELRLVEEDGTP 344 (505)
T ss_dssp HHHHHHHCSEEEECSSCCCHHHHHHHHHHH-SCCCEEEEEETTTEEEEECCT-TSCCCTTCCCEECTTCEEEEC-----C
T ss_pred hhcccccceEEEECCCCCCHHHHHHHHHhc-CCeeecccchhhcccccccCC-CCCCCCCCcccCCCCCEEEEECCCCCC
Confidence 124567899999999999999999999887 789999999999987654433 334556789999999999999999998
Q ss_pred CCC---CCCccccccc-ccccccccccccccCcceeEEecCCcccCceeeeecceEEEeCCCeEEEEecc-Cceeeecce
Q 010344 330 YPD---DQPCVGEVGL-FPLYLGATDRLLNADHEEVYFSGMPIYKGMHLRRHGDIIKRTVGGYIIVQGRA-DDTMNLGGI 404 (512)
Q Consensus 330 ~~~---g~~~~Gel~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~i~gR~-~d~i~~~G~ 404 (512)
++. |+ .|||++ ++..+.+| +.+++.+...| ..++||+|||+|++++||+++++||+ ||+||++|+
T Consensus 345 ~~~~~~g~--~GEl~v~g~~v~~GY--~~~~~~t~~~f------~~~g~y~TGDl~~~~~dG~l~~~GR~~d~~ik~~G~ 414 (505)
T 3nyq_A 345 IAALDGES--VGEIQVRGPNLFTEY--LNRPDATAAAF------TEDGFFRTGDMAVRDPDGYVRIVGRKATDLIKSGGY 414 (505)
T ss_dssp CCCCCSCC--CEEEEEESTTSCCEE--TTCHHHHHHTB------CTTSCEEEEEEEEECTTSCEEEEEESSCCCEEETTE
T ss_pred cccCCCCc--eEEEEEecCchhhhh--CCChhHhhhhh------cCCCCCccCCeEEECCCccEEEeCCccCceEEeCCE
Confidence 876 77 699999 55554432 22333333333 34579999999999999999999998 599999999
Q ss_pred ecchHHHHHhhhcCCcceeeeeEEeeCCCCCCCceEEEEEEecCCCCCCcHHHHHHHHHHHHHhccCCccceeeEEEecC
Q 010344 405 KTSSVEIERVCDGADESILETAAISVSPAGGGPEVLVICVVLKKGFTSQPVDKLKMIFSKAIQRNLNPLFKVSLVKIVLE 484 (512)
Q Consensus 405 ~v~~~~iE~~l~~~~~~v~~~~v~~~~~~~~~~~~~~a~v~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~p~~i~~~~~ 484 (512)
+|+|.|||++|. +||+|.+++|++.+++..+ +.++|+|++.++....+.+++.+ +++++|++|++|+.|+++++
T Consensus 415 ~v~~~eIE~~l~-~~p~V~~a~Vv~~~~~~~g-~~l~a~vv~~~~~~~~~~~~l~~----~l~~~L~~~~~P~~i~~v~~ 488 (505)
T 3nyq_A 415 KIGAGEIENALL-EHPEVREAAVTGEPDPDLG-ERIVAWIVPADPAAPPALGTLAD----HVAARLAPHKRPRVVRYLDA 488 (505)
T ss_dssp EECHHHHHHHHT-TSTTEEEEEEEEEEETTTE-EEEEEEEEESSTTSCCCHHHHHH----HHHHHTCGGGSCSEEEECSC
T ss_pred EECHHHHHHHHH-HCcCccEEEEEeeECCCCC-cEEEEEEEECCCCCCCCHHHHHH----HHHhhCCCCcCccEEEEECC
Confidence 999999999998 9999999999999998888 89999999986433255555554 45578899999999999999
Q ss_pred CCCCCCchHHHHHHHH
Q 010344 485 FPRTASNKLLRRVLKD 500 (512)
Q Consensus 485 iP~t~~GKi~r~~l~~ 500 (512)
||+|++||++|++|++
T Consensus 489 lP~t~~GKi~r~~L~~ 504 (505)
T 3nyq_A 489 VPRNDMGKIMKRALNR 504 (505)
T ss_dssp CCC-------------
T ss_pred CCCCCCcCeeHHhhcc
Confidence 9999999999999986
No 27
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}
Probab=100.00 E-value=9.4e-67 Score=584.56 Aligned_cols=455 Identities=18% Similarity=0.185 Sum_probs=374.7
Q ss_pred cHHHHHHHHhcc-CCCCCEEEEEcCCCHHHHHHHHHHHHhcceEeecCCCcCHHHHHHHHHhcCccEEEeccchhccCcc
Q 010344 2 SYRLVANALDTM-FSKGDAIAIDMPMTVHAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRK 80 (512)
Q Consensus 2 ~~~~~a~~L~~~-i~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~iv~~~~~~~~~~~ 80 (512)
.++++|++|++. +++||+|+|+++|++++++++|||+++|++++|++|.++.+++.++++++++++++++.........
T Consensus 498 ~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~vv~~lailkaG~~~vpldp~~p~~rl~~il~~~~~~~vl~~~~~~~~~~~ 577 (1304)
T 2vsq_A 498 EANRIARRLQKHGAGKGSVVALYTKRSLELVIGILGVLKAGAAYLPVDPKLPEDRISYMLADSAAACLLTHQEMKEQAAE 577 (1304)
T ss_dssp HHHHHHHHHHHTTCCTTCEEEECCCSSHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCCEEEECSTTCTTSTT
T ss_pred HHHHHHHHHHhcCcCCcCEEEEEeCCCHHHHHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHcCCCEEEECcchhhhhhc
Confidence 378999999999 9999999999999999999999999999999999999999999999999999999999753211100
Q ss_pred ccchhhHHhcCCCceEEeeccCCcccccccccCccHHHHhhccCCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEe
Q 010344 81 FPLYSKVAEAGPLKAVVLPVIGDDVGIQLRQQDVSWKDFLSCVDYHPGPKYYPPVYRPVDSVINILFSSGTTGEPKAIPW 160 (512)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~ 160 (512)
.+ .......++ .. ..+.. . ...+.....++++++++|||||||+||||++
T Consensus 578 ~~--------~~~~~~~~~--~~-------------~~~~~-~------~~~~~~~~~~~~~ayiiyTSGSTG~PKgV~~ 627 (1304)
T 2vsq_A 578 LP--------YTGTTLFID--DQ-------------TRFEE-Q------ASDPATAIDPNDPAYIMYTSGTTGKPKGNIT 627 (1304)
T ss_dssp CC--------CCSEEEESS--CG-------------GGGGS-C------SSCCCCCCCTTSEEEEEEECCSSSSCEEEEE
T ss_pred cC--------CCCcEEEec--cc-------------ccccc-c------cCCCCCCCCCCCeEEEEeCCCCCCCCCEEEE
Confidence 00 001111111 00 00000 0 0111223467899999999999999999999
Q ss_pred cCchhHHHHHHhhccccccCCcEEEecCCccchhhhHHHHhhhccCceEEEecCC--CchhhHHHHHHhcCceEEecchH
Q 010344 161 TQLSPIRCAAEAWGHIDMKVGDVYCWPTNLGWVMGPIILFSSFLSGAALALYHGS--PLERSFGKFVQDSGVSVLGTVPS 238 (512)
Q Consensus 161 s~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~--~~~~~~~~~l~~~~~t~l~~~P~ 238 (512)
+|+++.+. .+....+++.++|+++...|++|..+.+.++.++..|+++++.+.. .++..+++.|+++++|+++++|+
T Consensus 628 ~h~~l~~~-~~~~~~~~~~~~d~~l~~~~~~fd~~~~~~~~~l~~G~~l~~~~~~~~~~~~~l~~~i~~~~vt~~~~~p~ 706 (1304)
T 2vsq_A 628 THANIQGL-VKHVDYMAFSDQDTFLSVSNYAFDAFTFDFYASMLNAARLIIADEHTLLDTERLTDLILQENVNVMFATTA 706 (1304)
T ss_dssp EHHHHHHH-HSSCCSSCCCTTCEEEECSCTTSTHHHHHHHHHHTTTCEEEECCGGGTTCHHHHHHHHHHHTCCEEEEEHH
T ss_pred ehHHHHHH-HHHHHhcCCCCCCEEEEECCccHHHHHHHHHHHHHcCCEEEECChhhcCCHHHHHHHHHHcCCcEEEccHH
Confidence 99998865 4455567889999999999999999988899999999999998643 46789999999999999999999
Q ss_pred HHHHHHccCCCCCCCcCceeEEEeecCCCCchhhHHHHHhhCCCCeeeecCCccccceecccCCC---CCCccccccccc
Q 010344 239 LVKAWKNTNCLQGLDWTKIRSFASTGETSNVDDDLWLASKAYYKPIIECCGGTELASSYIQGSML---QPQAFGAFSTAT 315 (512)
Q Consensus 239 ~~~~l~~~~~~~~~~l~~l~~i~~~G~~l~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~---~~~~~~~~G~p~ 315 (512)
++..|.+.. ...++++|.+++|||++++++.+.+.+.+++.++++.||+||++...+..... ......++|+|+
T Consensus 707 ~~~~l~~~~---~~~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~iG~p~ 783 (1304)
T 2vsq_A 707 LFNLLTDAG---EDWMKGLRCILFGGERASVPHVRKALRIMGPGKLINCYGPTEGTVFATAHVVHDLPDSISSLPIGKPI 783 (1304)
T ss_dssp HHHHHHHHC---SHHHHTCSEEEEESSCCCHHHHHHHHHHHCTTCEEEEECCGGGSSCSEEEECCCCCSSCSSCCCBEEC
T ss_pred HHHHHHhhc---hhcCCCccEEEEecCCCCHHHHHHHHHhCCCCEEEEeEChhHHhHHheeeeccCccccCCCCCCceee
Confidence 999997653 23467899999999999999999998888778999999999998765543322 123446899999
Q ss_pred CCccEEEeCCCCCCCCCCCCccccccc-ccccccccccccccCcceeEEecCCcccCceeeeecceEEEeCCCeEEEEec
Q 010344 316 MTTGFVILDELGVPYPDDQPCVGEVGL-FPLYLGATDRLLNADHEEVYFSGMPIYKGMHLRRHGDIIKRTVGGYIIVQGR 394 (512)
Q Consensus 316 ~~~~~~i~d~~~~~~~~g~~~~Gel~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~i~gR 394 (512)
++++++|+|++++++|.|+ .|||+| +++...+| +.+++.+...|..+|+.++++||+|||+|++++||+++++||
T Consensus 784 ~~~~~~i~d~~~~~~p~G~--~GEl~i~G~~v~~GY--~~~p~~T~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR 859 (1304)
T 2vsq_A 784 SNASVYILNEQSQLQPFGA--VGELCISGMGVSKGY--VNRADLTKEKFIENPFKPGETLYRTGDLARWLPDGTIEYAGR 859 (1304)
T ss_dssp TTEEEEEECTTSCBCCTTC--CEEEEEEETTCCCCB--TTCHHHHHHHEEECTTSTTCEEEEEEEEEEECTTSCEEEEEE
T ss_pred CCCEEEEECCCcCCCCCCC--ceEEEEeccccCccc--cCCcccchhhhccCCCCCCCeeEecCCeEEEcCCCeEEEEcC
Confidence 9999999999999999999 699999 66665543 335566667777777777889999999999999999999999
Q ss_pred cCceeeecceecchHHHHHhhhcCCcceeeeeEEeeCCCCCCCceEEEEEEecCCCCCCcHHHHHHHHHHHHHhccCCcc
Q 010344 395 ADDTMNLGGIKTSSVEIERVCDGADESILETAAISVSPAGGGPEVLVICVVLKKGFTSQPVDKLKMIFSKAIQRNLNPLF 474 (512)
Q Consensus 395 ~~d~i~~~G~~v~~~~iE~~l~~~~~~v~~~~v~~~~~~~~~~~~~~a~v~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~ 474 (512)
+||+||++|++|+|.|||++|. +||+|.+++|++.++...+ +.++|+|+..+. .+.+++ +++++++|+.|+
T Consensus 860 ~d~qvki~G~rie~~eIE~~l~-~~p~V~~a~V~~~~~~~~~-~~l~a~vv~~~~---~~~~~l----~~~l~~~Lp~ym 930 (1304)
T 2vsq_A 860 IDDQVKIRGHRIELEEIEKQLQ-EYPGVKDAVVVADRHESGD-ASINAYLVNRTQ---LSAEDV----KAHLKKQLPAYM 930 (1304)
T ss_dssp GGGEEEETTEEEEHHHHHHHHH-HSSSCCEEEEEEECCSSSC-CEEEEEEECSSS---SCHHHH----HHHHHHHSCGGG
T ss_pred CCCEEEECCEeeCHHHHHHHHH-hCCCCceEEEEEEecCCCC-EEEEEEEeCCCC---CCHHHH----HHHHHHhChHhh
Confidence 9999999999999999999998 8999999999998887777 899999997653 455554 455557899999
Q ss_pred ceeeEEEecCCCCCCCchHHHHHHHHHHH
Q 010344 475 KVSLVKIVLEFPRTASNKLLRRVLKDQLK 503 (512)
Q Consensus 475 ~p~~i~~~~~iP~t~~GKi~r~~l~~~~~ 503 (512)
+|..|+++++||+|++||++|++|++...
T Consensus 931 vP~~~~~l~~lP~t~~GKidR~~L~~~~~ 959 (1304)
T 2vsq_A 931 VPQTFTFLDELPLTTNGKVNKRLLPKPDQ 959 (1304)
T ss_dssp SCSEEEEESCCCCCSSCSSCCSCCCCCCG
T ss_pred hccEEEEecccCCCCCcccCHhhcCCcch
Confidence 99999999999999999999999976544
No 28
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}
Probab=100.00 E-value=3.2e-67 Score=542.33 Aligned_cols=459 Identities=17% Similarity=0.193 Sum_probs=273.0
Q ss_pred cHHHHHHHHhcc-CCCCCEEEEEcCCCHHHHHHHHHHHHhcceEeecCCCcCHHHHHHHHHhcCccEEEeccchhccCcc
Q 010344 2 SYRLVANALDTM-FSKGDAIAIDMPMTVHAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRK 80 (512)
Q Consensus 2 ~~~~~a~~L~~~-i~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~iv~~~~~~~~~~~ 80 (512)
.++++|++|.+. + +||+|+++++|++++++++|||+++|++++|+++.++.+++.+++++++++++|+++......
T Consensus 64 ~~~~lA~~L~~~g~-~gd~V~i~~~n~~~~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~-- 140 (562)
T 3ite_A 64 TANQVANLIIHASL-HGRAIAVSLDRSLIAFAIIVGIMKSGNTYVPIEAGLPNDRKSFLLRDSRAAMAFVCDNNFDGV-- 140 (562)
T ss_dssp HHHHHHHHHHHTTC-SSCEEEEECCSCHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECTTTTTTC--
T ss_pred HHHHHHHHHHhcCC-CCCEEEEEeCCCHHHHHHHHHHHHhCCEEEecCCcCHHHHHHHHHHhcCCCEEEEcccccccc--
Confidence 378999999999 8 799999999999999999999999999999999999999999999999999999987432110
Q ss_pred ccchhhHHhcCCCceEEeeccCCcccccccccCccHHHHhhccCCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEe
Q 010344 81 FPLYSKVAEAGPLKAVVLPVIGDDVGIQLRQQDVSWKDFLSCVDYHPGPKYYPPVYRPVDSVINILFSSGTTGEPKAIPW 160 (512)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~ 160 (512)
.......++.. ....+.+....... ........++++++++|||||||.||||++
T Consensus 141 ---------~~~~~~~~~~~-----------~~~~~~~~~~~~~~-----~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~ 195 (562)
T 3ite_A 141 ---------ELPPETKVLDT-----------KNQSFIENLSTQDT-----SDILNNYPENLDAYLLYTSGSTGTPKGVRV 195 (562)
T ss_dssp ---------CCCTTCEEEET-----------TCHHHHHHHHHSCC-----SCCCCCCCTTSEEEEEEECC---CCEEEEE
T ss_pred ---------ccCccceeecc-----------cchhhhhhcccccc-----cccccCCCCCCcEEEEECCCCCCCCcEEEE
Confidence 00111111111 11123333222221 111223456789999999999999999999
Q ss_pred cCchhHHHHHHhhcc--------ccccCCcEEEecCCccchhhhHHHHhhhccCceEEEecCCCchhhHHHHHHhcCceE
Q 010344 161 TQLSPIRCAAEAWGH--------IDMKVGDVYCWPTNLGWVMGPIILFSSFLSGAALALYHGSPLERSFGKFVQDSGVSV 232 (512)
Q Consensus 161 s~~~~~~~~~~~~~~--------~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~l~~~~~t~ 232 (512)
||+++.+........ +.+...+++++..|+.|..++..++.++..|+++++.+....++.+++.++++++|+
T Consensus 196 th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~i~~~~~t~ 275 (562)
T 3ite_A 196 SRHNLSSFSDAWGKLIGNVAPKSLELGGVGKFLCLASRAFDVHIGEMFLAWRFGLCAVTGERLSMLDDLPRTFRELGVTH 275 (562)
T ss_dssp EHHHHHHHHHHHHHHHHHHCGGGGGCTTTCEEECCSCTTSTHHHHHHHHHHHTTCEEEECCHHHHHHSHHHHHHHTTCCE
T ss_pred CchhHHHHHHHHHhhhccccchhcccCcCceEEEecCchhhhhHHHHHHHHhcccEEEecchhhCHHHHHHHHHHcCCCE
Confidence 999998876654332 446788999999999999888888899999999998654344578899999999999
Q ss_pred EecchHHHHHHHccCCCCCCCcCceeEEEeecCCCCchhhHHHHHhhCCCCeeeecCCccccceecccCCCCCCcccccc
Q 010344 233 LGTVPSLVKAWKNTNCLQGLDWTKIRSFASTGETSNVDDDLWLASKAYYKPIIECCGGTELASSYIQGSMLQPQAFGAFS 312 (512)
Q Consensus 233 l~~~P~~~~~l~~~~~~~~~~l~~l~~i~~~G~~l~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~G 312 (512)
+.++|+++..+... ..+++++|.+++||+++++++.+.+.+.+ ++++++.||+||++...+..........+++|
T Consensus 276 ~~~~P~~l~~~~~~----~~~~~~lr~~~~gG~~l~~~~~~~~~~~~-~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~G 350 (562)
T 3ite_A 276 AGIVPSLLDQTGLV----PEDAPHLVYLGVGGEKMTPRTQQIWSSSD-RVALVNVYGPTEVTIGCSAGRILPDSDTRCIG 350 (562)
T ss_dssp EEECHHHHHHHTCC----GGGSTTCCEEEEESSCCCHHHHHHHTTCS-SCEEEEEECCGGGCSCSEEEECCTTSCTTEEE
T ss_pred EEcCHHHHhhcccC----ccccCceEEEEEecCCCCHHHHHHHhhCC-CcEEEEeeccchheeeeeeeeecCCCCCcccc
Confidence 99999998877433 34678999999999999999999998765 78999999999998766555444455667899
Q ss_pred cccCCccEEEeCC-CCCCCCCCCCccccccc-ccccccccccccccCcceeEEecCCcccCceeeeecceEEEeCCCeEE
Q 010344 313 TATMTTGFVILDE-LGVPYPDDQPCVGEVGL-FPLYLGATDRLLNADHEEVYFSGMPIYKGMHLRRHGDIIKRTVGGYII 390 (512)
Q Consensus 313 ~p~~~~~~~i~d~-~~~~~~~g~~~~Gel~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~ 390 (512)
.|+++++++|+|+ .+++++.|+ .|||++ ++..+.+| +.+++.+...+ .++++||+|||+|++|+||+++
T Consensus 351 ~p~~~~~~~i~d~~~~~~~~~g~--~GEl~v~g~~v~~GY--~~~p~~t~~~~-----~~g~~w~~TGDlg~~d~dG~l~ 421 (562)
T 3ite_A 351 HPLGDSVAHVLAPGSNEHVKKGM--AGELVIEGSLVANGY--LNRPDAKGFCD-----INGRKMYRTGDIVRMDADSSIL 421 (562)
T ss_dssp EECTTCEEEEECTTSSCBCCTTS--CEEEEEESTTSCCEE--SSCTTCCSEEE-----ETTEEEEEEEEEEEECTTSCEE
T ss_pred ccCCCCeEEEEeCCCCCCCCCCC--ceEEEEeccccchhh--CCCcccccccc-----CCCCEEEecCCEEEEcCCCeEE
Confidence 9999999999994 578899999 699999 55555432 22344433322 2566799999999999999999
Q ss_pred EEeccCceeeecceecchHHHHHhhhcCC-cceeeeeEEeeCCCCCCCceEEEEEEecCCCCC--------CcHHHHHHH
Q 010344 391 VQGRADDTMNLGGIKTSSVEIERVCDGAD-ESILETAAISVSPAGGGPEVLVICVVLKKGFTS--------QPVDKLKMI 461 (512)
Q Consensus 391 i~gR~~d~i~~~G~~v~~~~iE~~l~~~~-~~v~~~~v~~~~~~~~~~~~~~a~v~~~~~~~~--------~~~~~l~~~ 461 (512)
|+||+||+||++|++|+|.|||++|. ++ |.+.+++|++.+++..+ +..++.++...+... .+...+.+.
T Consensus 422 ~~GR~dd~Ik~~G~~v~p~eIE~~l~-~~~~~~~~~~v~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 499 (562)
T 3ite_A 422 FLGRKDEQVKVRGQRLELGEVSEVIR-SLSPTDIDVVTLLLNHPGTS-KQFLVSFVASSGAAVRGELRWINENYKEINNS 499 (562)
T ss_dssp EEEEC---------------------------------------------------------------------------
T ss_pred EEccccCEEeECcEEECHHHHHHHHH-hcCCCceeEEEEEecCCCCc-ceEEEEEEecccccccccccccccchhhHHHH
Confidence 99999999999999999999999998 66 78889999988888777 555555554433220 112234557
Q ss_pred HHHHHHhccCCccceeeEEEecCCCCC-CCchHHHHHHHHHHHh
Q 010344 462 FSKAIQRNLNPLFKVSLVKIVLEFPRT-ASNKLLRRVLKDQLKH 504 (512)
Q Consensus 462 ~~~~~~~~l~~~~~p~~i~~~~~iP~t-~~GKi~r~~l~~~~~~ 504 (512)
++++++++|+.|++|+.|+++++||+| ++||++|++|++++++
T Consensus 500 l~~~~~~~L~~y~~P~~i~~v~~lP~t~~~GKi~r~~L~~~~~~ 543 (562)
T 3ite_A 500 LRQACEQTLPAYMVPDFIIPISFIPLRDTSAKTDAKALEHMFHT 543 (562)
T ss_dssp --------------------------------------------
T ss_pred HHHHHHhhCCcccCCcEEEEeccCCCCCCCCcchHHHHHHHHhc
Confidence 777888899999999999999999998 8999999999999875
No 29
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*
Probab=100.00 E-value=1.3e-66 Score=541.69 Aligned_cols=465 Identities=15% Similarity=0.122 Sum_probs=363.2
Q ss_pred cHHHHHHHHhcc-CCCCCEEEEEcCCCHHHHHHHHHHHHhcceEeecCCCc---CHHHHHHHHHhcCccEEEeccchhcc
Q 010344 2 SYRLVANALDTM-FSKGDAIAIDMPMTVHAVIIYLAIILAGYVVVSIADSF---AAREIATRLRVSKAKGIFTQDFILRG 77 (512)
Q Consensus 2 ~~~~~a~~L~~~-i~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~---~~~~l~~~l~~~~~~~iv~~~~~~~~ 77 (512)
.++++|++|++. +++||+|+++++|++++++++|||+++|++++|++|.+ +.+++.++++++++++++++......
T Consensus 49 ~~~~lA~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~vpl~~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~ 128 (590)
T 3kxw_A 49 HAKAIAATLQAEGAKPGDRVLLLFAPGLPLIQAFLGCLYAGCIAVPIYPPAQEKLLDKAQRIVTNSKPVIVLMIADHIKK 128 (590)
T ss_dssp HHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHTTCEEEEECCCCSHHHHHHHHHHHHHHCCSEEEECHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHHHHHHHhCcEEEEecCCCchHHHHHHHHHHHhCCCCEEEeCHHHHHH
Confidence 478999999999 99999999999999999999999999999999999988 45789999999999999998753211
Q ss_pred CccccchhhHH-hcCCC--ceEEeeccCCcccccccccCccHHHHhhccCCCCCCCCCCCCCCCCCCeEEEEecCCCCCC
Q 010344 78 GRKFPLYSKVA-EAGPL--KAVVLPVIGDDVGIQLRQQDVSWKDFLSCVDYHPGPKYYPPVYRPVDSVINILFSSGTTGE 154 (512)
Q Consensus 78 ~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~ 154 (512)
+.... ...+. ....+. ++++..... .........++++++++|||||||.
T Consensus 129 ------~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~-----~~~~~~~~~~~d~a~i~~TSGTTG~ 181 (590)
T 3kxw_A 129 ------FTADELNTNPKFLKIPAIA----------------LESIELNRS-----SSWQPTSIKSNDIAFLQYTSGSTMH 181 (590)
T ss_dssp ------HCC-----CCEETTEEEEE----------------GGGCCGGGG-----GGCCCCCCCTTSEEEEEECSSCSSS
T ss_pred ------HHHhhhhhcccccccceee----------------chhcccccc-----ccCCCCCCCCCCeEEEEeCcCCCCC
Confidence 10000 00000 001110 111100000 0112234567899999999999999
Q ss_pred CceEEecCchhHHHHHHhhccccccCCcEEEecCCccchhhhHH-HHhhhccCceEEEecCCC---chhhHHHHHHhcCc
Q 010344 155 PKAIPWTQLSPIRCAAEAWGHIDMKVGDVYCWPTNLGWVMGPII-LFSSFLSGAALALYHGSP---LERSFGKFVQDSGV 230 (512)
Q Consensus 155 pK~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~-~~~~l~~G~~~~~~~~~~---~~~~~~~~l~~~~~ 230 (512)
||||++||+++.+.+.+....+++.++|++++++|++|.+++.. ++.+++.|+++++.+... ++..+++.|+++++
T Consensus 182 PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~~ 261 (590)
T 3kxw_A 182 PKGVMVSHHNLLDNLNKIFTSFHMNDETIIFSWLPPHHDMGLIGCILTPIYGGIQAIMMSPFSFLQNPLSWLKHITKYKA 261 (590)
T ss_dssp CCEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHTTTHHHHHHTCEEEECCHHHHHHCTHHHHHHHHHHTC
T ss_pred ceEEEeeHHHHHHHHHHHHHhhCCCCcCeEEEecCCCcchhhHHHHHHHHhcCceEEEeCHHHHHHCHHHHHHHHHHhCC
Confidence 99999999999999998888889999999999999999999976 889999999999976422 57899999999999
Q ss_pred eEEecchHHHHHHHcc---CCCCCCCcCceeEEEeecCCCCchhhHHHHHhhC-----CCCeeeecCCccccceecccCC
Q 010344 231 SVLGTVPSLVKAWKNT---NCLQGLDWTKIRSFASTGETSNVDDDLWLASKAY-----YKPIIECCGGTELASSYIQGSM 302 (512)
Q Consensus 231 t~l~~~P~~~~~l~~~---~~~~~~~l~~l~~i~~~G~~l~~~~~~~~~~~~~-----~~~i~~~yG~tE~~~~~~~~~~ 302 (512)
|++.++|+++..+++. ......+++++|.+++||+++++++.+.+.+.++ +.++++.||+||++..++....
T Consensus 262 t~~~~~p~~~~~l~~~~~~~~~~~~~l~~lr~~~~gg~~l~~~~~~~~~~~~~~~g~~~~~~~~~YG~TE~~~~~~~~~~ 341 (590)
T 3kxw_A 262 TISGSPNFAYDYCVKRIREEKKEGLDLSSWVTAFNGAEPVREETMEHFYQAFKEFGFRKEAFYPCYGLAEATLLVTGGTP 341 (590)
T ss_dssp SEEEECTHHHHHHHHHCCGGGGTTCCCTTCCEEEECSSCCCHHHHHHHHHHHGGGTCCGGGEEEEEECGGGSSEEEECCT
T ss_pred eeecCChhHHHHHHHHhhhhhccCCCchhhHHHhhCCCCCCHHHHHHHHHHHHHcCCCccccccccccccccceeecccC
Confidence 9999999999988765 2344567899999999999999999999998874 3479999999999987654321
Q ss_pred C--------------------------CCCcccccccccCCccEEEeCCC-CCCCCCCCCccccccc-cccccccccccc
Q 010344 303 L--------------------------QPQAFGAFSTATMTTGFVILDEL-GVPYPDDQPCVGEVGL-FPLYLGATDRLL 354 (512)
Q Consensus 303 ~--------------------------~~~~~~~~G~p~~~~~~~i~d~~-~~~~~~g~~~~Gel~v-~~~~~~~~~~~~ 354 (512)
. ......++|.|+++ ++|+|++ +++++.|+ .|||+| ++..+.+| +.
T Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~--v~i~d~~~~~~~~~g~--~GEl~v~g~~v~~GY--~~ 415 (590)
T 3kxw_A 342 GSSYKTLTLAKEQFQDHRVHFADDNSPGSYKLVSSGNPIQE--VKIIDPDTLIPCDFDQ--VGEIWVQSNSVAKGY--WN 415 (590)
T ss_dssp TSCCCEEEECSCCCSSSBCCBCCTTCTTCEEEECCCEESSE--EEEECTTTCCBCCTTB--CEEEEEESTTSCCCB--TT
T ss_pred CCCceeeeecHHHHhcCceeeccCCCCCcceEeccCCCCCC--eEEEcCCCCcCCCCCC--EEEEEEeCCcccccc--cC
Confidence 1 11234688999998 8899966 89999999 699999 66655532 33
Q ss_pred ccCcceeEEecCCccc--CceeeeecceEEEeCCCeEEEEeccCceeeecceecchHHHHHhhhcCCccee--eeeEEee
Q 010344 355 NADHEEVYFSGMPIYK--GMHLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDGADESIL--ETAAISV 430 (512)
Q Consensus 355 ~~~~~~~~~~~~~~~~--~~~~~~TGD~~~~~~~g~l~i~gR~~d~i~~~G~~v~~~~iE~~l~~~~~~v~--~~~v~~~ 430 (512)
+++.+...|.+++... +.+||+|||+|++| +|+++|+||.||+||++|++|+|.+||++|...+|.|. +++|+++
T Consensus 416 ~p~~t~~~f~~~~~~~~~g~~~~~TGDlg~~d-dG~l~~~GR~dd~Ik~~G~~v~p~eIE~~l~~~~~~v~~~~~~v~~~ 494 (590)
T 3kxw_A 416 QPEETRHAFAGKIKDDERSAIYLRTGDLGFLH-ENELYVTGRIKDLIIIYGKNHYPQDIEFSLMHSPLHHVLGKCAAFVI 494 (590)
T ss_dssp CHHHHHHHHCBCCTTC---CCBEEEEEEEEEE-TTEEEEEEESSCHHHHHHHTTHHHHHHHHHHHSGGGGGEEEEEEEEE
T ss_pred ChhHHHHHHhccccCCCCCCcEEecCcEEEEE-CCEEEEEcCccceEEECCEecCHHHHHHHHHhcCccccCccEEEEEe
Confidence 4555555555433332 34499999999999 99999999999999999999999999999933899998 8999998
Q ss_pred CCCCCCCceEEEEEEecCCCC-CCcHHHHHHHHHHHHHhccCCcccee-eEEEe--cCCCCCCCchHHHHHHHHHHHhh
Q 010344 431 SPAGGGPEVLVICVVLKKGFT-SQPVDKLKMIFSKAIQRNLNPLFKVS-LVKIV--LEFPRTASNKLLRRVLKDQLKHE 505 (512)
Q Consensus 431 ~~~~~~~~~~~a~v~~~~~~~-~~~~~~l~~~~~~~~~~~l~~~~~p~-~i~~~--~~iP~t~~GKi~r~~l~~~~~~~ 505 (512)
+++. + +.+++++++.++.. ..+.+++.+++++++.+. |+.|. .++++ ++||+|++||++|++|++++.+.
T Consensus 495 ~~~~-~-~~~~~~v~~~~~~~~~~~~~~l~~~l~~~l~~~---~~~p~~~i~~v~~~~lP~t~sGKi~R~~L~~~~~~~ 568 (590)
T 3kxw_A 495 QEEH-E-YKLTVMCEVKNRFMDDVAQDNLFNEIFELVYEN---HQLEVHTIVLIPLKAMPHTTSGKIRRNFCRKHLLDK 568 (590)
T ss_dssp EETT-E-EEEEEEEEESCTTCCHHHHHHHHHHHHHHHHHH---HSCCCCEEEEEETTCSCCCSCHHHHHHHHHHHHHHT
T ss_pred cCCC-C-ceEEEEEEeccccccchhHHHHHHHHHHHHHHH---cCCceeEEEEECCCccCcCCCcHHHHHHHHHHHHcC
Confidence 8765 5 78889998877541 145667777777776543 34553 44444 79999999999999999999753
No 30
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme family,, structural genomics, PSI-2, protein structure initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB: 3pbk_A*
Probab=100.00 E-value=3.4e-65 Score=529.82 Aligned_cols=460 Identities=18% Similarity=0.193 Sum_probs=358.3
Q ss_pred cHHHHHHHHhcc-CCCCCEEEEEcCCCHHHHHHHHHHHHhcceEeecCCCcC-------HHHHHHHHHhcCccEEEeccc
Q 010344 2 SYRLVANALDTM-FSKGDAIAIDMPMTVHAVIIYLAIILAGYVVVSIADSFA-------AREIATRLRVSKAKGIFTQDF 73 (512)
Q Consensus 2 ~~~~~a~~L~~~-i~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~-------~~~l~~~l~~~~~~~iv~~~~ 73 (512)
.++++|++|++. +++||+|+++++|++++++++|||+++|++++|+++.++ .+++.+++++++++++++++.
T Consensus 58 ~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~vpl~~~~~~~~~~~~~~~l~~~l~~~~~~~ii~~~~ 137 (576)
T 3gqw_A 58 RAEAGAKRLLSLNLKKGDRVALIAETSSEFVEAFFACQYAGLVAVPLAIPMGVGQRDSWSAKLQGLLASCQPAAIITGDE 137 (576)
T ss_dssp HHHHHHHHHHHTCCCTTCEEEEECCSSHHHHHHHHHHHHTTCEEEEECCCSSSSSHHHHHHHHHHHHHHHCCSEEEECGG
T ss_pred HHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHHhCCeEeecCCCCcccchhhHHHHHHHHHHhcCCCEEEecHH
Confidence 378999999999 999999999999999999999999999999999999998 899999999999999999975
Q ss_pred hhccCccccchhhHHhcCCCceEEeeccCCcccccccccCccHHHHhhccCCCCCCCCCCCCCCCCCCeEEEEecCCCCC
Q 010344 74 ILRGGRKFPLYSKVAEAGPLKAVVLPVIGDDVGIQLRQQDVSWKDFLSCVDYHPGPKYYPPVYRPVDSVINILFSSGTTG 153 (512)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG 153 (512)
.. +.+.......+.... +.. .+.+. ... .........++++++++|||||||
T Consensus 138 ~~------~~~~~~~~~~~~~~~-~~~--------------~~~~~---~~~----~~~~~~~~~~~d~a~i~~TSGTTG 189 (576)
T 3gqw_A 138 WL------PLVNAATHDNPELHV-LSH--------------AWFKA---LPE----ADVALQRPVPNDIAYLQYTSGSTR 189 (576)
T ss_dssp GH------HHHHHHGGGCTTCEE-EEH--------------HHHHT---SCC----CCCCCCCCCTTSEEEEECTTSCSS
T ss_pred HH------HHHHHhhccCCccee-cch--------------hhhhc---ccc----cccccCCCCCCCeEEEEeCCCCCC
Confidence 32 222222222221111 110 01111 111 111223345789999999999999
Q ss_pred CCceEEecCchhHHHHHHhhcc-ccccCCcEEEecCCccchhhhHH-HHhhhccCceEEEecCC---CchhhHHHHHHhc
Q 010344 154 EPKAIPWTQLSPIRCAAEAWGH-IDMKVGDVYCWPTNLGWVMGPII-LFSSFLSGAALALYHGS---PLERSFGKFVQDS 228 (512)
Q Consensus 154 ~pK~v~~s~~~~~~~~~~~~~~-~~~~~~~~~~~~~p~~~~~~~~~-~~~~l~~G~~~~~~~~~---~~~~~~~~~l~~~ 228 (512)
.||+|+++|+++.+++...... +++.++|++++.+|++|..++.. ++.++..|+++++.+.. .++..+++.++++
T Consensus 190 ~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~i~~~ 269 (576)
T 3gqw_A 190 FPRGVIITHREVMANLRAISHDGIKLRPGDRCVSWLPFYHDMGLVGFLLTPVATQLSVDYLRTQDFAMRPLQWLKLISKN 269 (576)
T ss_dssp SCCCEEEEHHHHHHHHHHHHHTTSCCCTTCCEEECCCTTSHHHHHHHTHHHHHTTCCEEECCHHHHHHCTTHHHHHHHHT
T ss_pred CCceEEeeHHHHHHHHHHhhhcccCCCCcceEEEcCCccccccHHHHHHHHHhcCceEEEcchhHhhhCHHHHHHHHHHh
Confidence 9999999999999888776543 78899999999999999999875 77788899998886531 3678999999999
Q ss_pred CceEEecchHHHHHHHccCC---CCCCCcCceeEEEeecCCCCchhhHHHHHhhC-----CCCeeeecCCccccceeccc
Q 010344 229 GVSVLGTVPSLVKAWKNTNC---LQGLDWTKIRSFASTGETSNVDDDLWLASKAY-----YKPIIECCGGTELASSYIQG 300 (512)
Q Consensus 229 ~~t~l~~~P~~~~~l~~~~~---~~~~~l~~l~~i~~~G~~l~~~~~~~~~~~~~-----~~~i~~~yG~tE~~~~~~~~ 300 (512)
++|+++++|+++..+.+... ....+++++|.+++||+++++++.+.+.+.++ +.++++.||+||++...+..
T Consensus 270 ~~t~~~~~p~~~~~l~~~~~~~~~~~~~l~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~ 349 (576)
T 3gqw_A 270 RGTVSVAPPFGYELCQRRVNEKDLAELDLSCWRVAGIGAEPISAEQLHQFAECFRQVNFDNKTFMPCYGLAENALAVSFS 349 (576)
T ss_dssp TCCEEEECHHHHHHHHHSCCHHHHTTCCCTTCCEEEECSSCCCHHHHHHHHHHHGGGTCCGGGEEEEEECGGGSSEEEEC
T ss_pred CCeEEEcCHHHHHHHHHHhcccccccCChhhhHhhhccCccCCHHHHHHHHHHHhhcCCCcccccccCCcccccceeecc
Confidence 99999999999987765432 34567899999999999999999999998875 67899999999999876654
Q ss_pred CCCCC---------------------------CcccccccccCCccEEEeCCCCCCCCCCCCccccccc-cccccccccc
Q 010344 301 SMLQP---------------------------QAFGAFSTATMTTGFVILDELGVPYPDDQPCVGEVGL-FPLYLGATDR 352 (512)
Q Consensus 301 ~~~~~---------------------------~~~~~~G~p~~~~~~~i~d~~~~~~~~g~~~~Gel~v-~~~~~~~~~~ 352 (512)
..... ....++|+|+++++++|+|++|++++.|+ .|||++ ++..+.+|.
T Consensus 350 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~g~~~~~g~--~GEl~v~g~~~~~gY~- 426 (576)
T 3gqw_A 350 DEASGVVVNEVDRDILEYQGKAVAPGAETRAVSTFVNCGKALPEHGIEIRNEAGMPVAERV--VGHICISGPSLMSGYF- 426 (576)
T ss_dssp CTTCCCCEEEEEHHHHHHHCBCCCCCTTCCCEEEEEBCCEECTTCEEEEECTTSCBCCTTB--CEEEEEESTTSCCCBT-
T ss_pred cccCCccccccchhhhcccCcccccCccccCccceeecCCcCCCCeEEEECCCCCCCCCCC--eEEEEEeCcccccccc-
Confidence 32211 01237899999999999999999999999 699999 555544321
Q ss_pred ccccCcceeEEecCCcccCceeeeecceEEEeCCCeEEEEeccCceeeecceecchHHHHHhhhcCCcceeeeeEEeeCC
Q 010344 353 LLNADHEEVYFSGMPIYKGMHLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDGADESILETAAISVSP 432 (512)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~i~gR~~d~i~~~G~~v~~~~iE~~l~~~~~~v~~~~v~~~~~ 432 (512)
.+++.+.. ...++||+|||+|++ +||+++++||.||+||++|++|+|.+||++|. +||+|.+++|++..+
T Consensus 427 -~~~~~~~~-------~~~~g~~~TGDl~~~-~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~-~~p~V~~~~vv~~~~ 496 (576)
T 3gqw_A 427 -GDQVSQDE-------IAATGWLDTGDLGYL-LDGYLYVTGRIKDLIIIRGRNIWPQDIEYIAE-QEPEIHSGDAIAFVT 496 (576)
T ss_dssp -TCHHHHHH-------HHHHSCEEEEEEEEE-ETTEEEEEEETTTCEEETTEEECHHHHHHHHT-TSSSCCTTSEEEEEC
T ss_pred -CCcccccc-------ccCCCeeeccceEEE-ECCEEEEEecCcceEEECCEEECHHHHHHHHH-hCcccccccEEEEEc
Confidence 12221111 134679999999999 79999999999999999999999999999998 999999998888776
Q ss_pred CCCCCceEEEEEEecCCCCCCcHHHHHHHHHHHHHhccCCccceeeEEEec--CCCCCCCchHHHHHHHHHHHhhhhcc
Q 010344 433 AGGGPEVLVICVVLKKGFTSQPVDKLKMIFSKAIQRNLNPLFKVSLVKIVL--EFPRTASNKLLRRVLKDQLKHELSVR 509 (512)
Q Consensus 433 ~~~~~~~~~a~v~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~p~~i~~~~--~iP~t~~GKi~r~~l~~~~~~~~~~~ 509 (512)
+. +...++++...... ...+++.+.+++++. +.|+.|..+.+++ +||+|++||++|++|++++++.+...
T Consensus 497 ~~---~~~~~~~~~~~~~~-~~~~~l~~~l~~~l~---~~~~~p~~i~~v~~~~lP~t~~GKi~r~~l~~~~~~~~~~~ 568 (576)
T 3gqw_A 497 AQ---EKIILQIQCRISDE-ERRGQLIHALAARIQ---SEFGVTAAIDLLPPHSIPRTSSGKPARAEAKKRYQKAYAAS 568 (576)
T ss_dssp TT---SCEEEEEECCCCCH-HHHHHHHHHHHHHHH---HHHSCCEEEEEECSSCSCBCTTSSBCHHHHHHHHHHHHTCC
T ss_pred CC---ccEEEEEEEecCch-hHHHHHHHHHHHHHH---HHhCCceeEEEECCCCcCcCCCccchHHHHHHHHHHHhhhc
Confidence 53 34455555543322 233445555554442 3578888888887 89999999999999999999876553
No 31
>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}
Probab=100.00 E-value=9e-56 Score=428.48 Aligned_cols=317 Identities=15% Similarity=0.149 Sum_probs=265.4
Q ss_pred CCeEEEEecCCCCCCCceEEecCchhHHHHHHhhccccccCCcEEEecCCccchhhhHHHHhhhccCceEEEecCCCchh
Q 010344 140 DSVINILFSSGTTGEPKAIPWTQLSPIRCAAEAWGHIDMKVGDVYCWPTNLGWVMGPIILFSSFLSGAALALYHGSPLER 219 (512)
Q Consensus 140 ~~~~~i~~TSGtTG~pK~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~ 219 (512)
|++++|+|||||||.||||++||+++.+++......+++.++|++++++|++|.+++..++.++..|+++++.+...
T Consensus 37 d~~a~Il~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~gl~~~~~~l~~g~~~~~~~~~~--- 113 (358)
T 4gs5_A 37 GAREFVLHTSGSTGMPKPITVTRAQLAASAAMTGKALSLGPGTRALVCLNVGYIAGLMMLVRGMELDWELTVTEPTA--- 113 (358)
T ss_dssp TCSEEEEEEECTTSSEEEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEEECCCS---
T ss_pred CCCEEEEECCcccccCcEEEEeHHHHHHHHHHHHHHhCCCCCCEEEEECChHHHHHHHHHHHHHHhCcEEEecCccc---
Confidence 67899999999999999999999999999988888899999999999999999999988889999999999976543
Q ss_pred hHHHHHHhcCceEEecchHHHHHHHccCCCCCCCcCceeEEEeecCCCCchhhHHHHHhhCCCCeeeecCCccccceecc
Q 010344 220 SFGKFVQDSGVSVLGTVPSLVKAWKNTNCLQGLDWTKIRSFASTGETSNVDDDLWLASKAYYKPIIECCGGTELASSYIQ 299 (512)
Q Consensus 220 ~~~~~l~~~~~t~l~~~P~~~~~l~~~~~~~~~~l~~l~~i~~~G~~l~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~ 299 (512)
..++.|+++++|++.++|+++..|++... ...+++++|.+++||+++++++.+++.+. +.++++.||+||++.....
T Consensus 114 ~~~~~i~~~~~t~~~~~P~~l~~ll~~~~-~~~~l~~lr~v~~gG~~l~~~~~~~~~~~--~~~~~~~YG~TEt~~~~~~ 190 (358)
T 4gs5_A 114 NPLAGLDHADFDFVAMVPMQLQSILENSA-TSGQVDRLGKVLLGGAPVNHALAMQISDL--AMPVYQSYGMTETVSHVAL 190 (358)
T ss_dssp CTTTTCSSCCCSEEEECHHHHHHHHHCTT-TGGGGGGGCSEEECSSCCCHHHHHHHHTC--SSCEEEEEECGGGSSEEEE
T ss_pred cHHHHHHHhCCeEEEcChHHHHHhhcccc-ccccCCcceEEEEcccCCCchheeccccc--CceEEeccccccccceeec
Confidence 34567899999999999999999987653 34578999999999999999999998763 7899999999999876554
Q ss_pred cCCCCCCcccccccccCCccEEEeCCCCCCCCCCCCcccccccccccccccccccccCcceeEEecCCcccCceeeeecc
Q 010344 300 GSMLQPQAFGAFSTATMTTGFVILDELGVPYPDDQPCVGEVGLFPLYLGATDRLLNADHEEVYFSGMPIYKGMHLRRHGD 379 (512)
Q Consensus 300 ~~~~~~~~~~~~G~p~~~~~~~i~d~~~~~~~~g~~~~Gel~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD 379 (512)
... .....+.+|.+.|++.+.+.+ .||++++..+ ..++||+|||
T Consensus 191 ~~~-~~~~~g~~~~~~pgv~~~~~~------------~Gel~~~g~~-----------------------~~~g~~~TGD 234 (358)
T 4gs5_A 191 KAL-NGPEASELYVFLPGIQYGVDE------------RGCLHISGAV-----------------------TNGQTVQTND 234 (358)
T ss_dssp EEC-SSTTCCSCEEECTTCEEEECT------------TSEEEEESGG-----------------------GTTCCEEEEE
T ss_pred ccc-cccccceeeccCCCeEEEecC------------cCceEEeccc-----------------------ccCcceecCC
Confidence 433 334457889999999888743 3898884322 2346999999
Q ss_pred eEEEeCCCeEEEEeccCceeeecceecchHHHHHhhhc--CCcceeeeeEE-eeCCCCCCCceEEEEEEecCCCCCCcHH
Q 010344 380 IIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDG--ADESILETAAI-SVSPAGGGPEVLVICVVLKKGFTSQPVD 456 (512)
Q Consensus 380 ~~~~~~~g~l~i~gR~~d~i~~~G~~v~~~~iE~~l~~--~~~~v~~~~v~-~~~~~~~~~~~~~a~v~~~~~~~~~~~~ 456 (512)
+|++|++| ++++||.||+||++|++|+|.+||++|.. .||.|.+++|+ +.+++..| +.++++|+.... +
T Consensus 235 lg~~d~~g-~~~~GR~dd~Ik~~G~~v~p~eIE~~l~~~~~~p~V~~a~vv~~~~d~~~g-e~~~a~v~~~~~------~ 306 (358)
T 4gs5_A 235 LVEIHGNA-FQWIGRADNVINSGGVKIVLDQIDQRIAAVFHHLNIGNAFFCWWEPDAKLG-QKLVLVIENAMP------E 306 (358)
T ss_dssp EEEECSSE-EEEEEEGGGEEEETTEEEEHHHHHHHHHHHHHHHTCCCCEEEEEEEETTTE-EEEEEEEESCCC------H
T ss_pred ccccccCc-eEEcccccCeEEECCEEECHHHHHHHHHHhccCCCccEEEEEEecCCccCC-EEEEEEEECCCC------C
Confidence 99999988 56679999999999999999999987731 58999998876 56677777 788888876432 2
Q ss_pred HHHHHHHHHHHhccCCccceeeEEEecCCCCCCCchHHHHHHHHHHHhhh
Q 010344 457 KLKMIFSKAIQRNLNPLFKVSLVKIVLEFPRTASNKLLRRVLKDQLKHEL 506 (512)
Q Consensus 457 ~l~~~~~~~~~~~l~~~~~p~~i~~~~~iP~t~~GKi~r~~l~~~~~~~~ 506 (512)
...+.++++++++|+.|++|+.|+++++||+|++||++|++|++++++..
T Consensus 307 ~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~l~e~~ 356 (358)
T 4gs5_A 307 ALTERLTAEIRSRVSTYENPKHIYFAKAFAKTQTDKIDKRATFQKLSDSS 356 (358)
T ss_dssp HHHHHHHHHHHHHSCGGGSCSCEEEESSCCBCTTSCBCHHHHHHHTC---
T ss_pred cCHHHHHHHHHhhCCCCCCceEEEEECCcCCCCCCChhHHHHHHHhhhhc
Confidence 34456667777889999999999999999999999999999999987653
No 32
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A
Probab=100.00 E-value=7.4e-51 Score=412.66 Aligned_cols=358 Identities=16% Similarity=0.122 Sum_probs=270.2
Q ss_pred cHHHHHHHHhcc-CCCCCEEEEEcCCCHHHHHHHHHHHHhcceEeecCC---CcCHHHHHHHHHhcCccEEEeccchhcc
Q 010344 2 SYRLVANALDTM-FSKGDAIAIDMPMTVHAVIIYLAIILAGYVVVSIAD---SFAAREIATRLRVSKAKGIFTQDFILRG 77 (512)
Q Consensus 2 ~~~~~a~~L~~~-i~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~---~~~~~~l~~~l~~~~~~~iv~~~~~~~~ 77 (512)
.++++|++|++. + +||+|+++++|++++++++|||+++|++++|+++ .++.+++.+++++++++++|++....
T Consensus 67 ~~~~lA~~L~~~g~-~gd~V~i~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~~~~l~~il~~~~~~~vi~~~~~~-- 143 (480)
T 3t5a_A 67 RTLNVAQELSRCGS-TGDRVVISAPQGLEYVVAFLGALQAGRIAVPLSVPQGGVTDERSDSVLSDSSPVAILTTSSAV-- 143 (480)
T ss_dssp HHHHHHHHHTTSSC-TTCEEEEECCSSHHHHHHHHHHHHTTCEEEEECSCCSCTTCCHHHHHHHHHCCSEEEECTTTH--
T ss_pred HHHHHHHHHHhcCC-CCCEEEEEcCCcHHHHHHHHHHHHhCcEEEeeCCCCccchHHHHHHHHHhCCCCEEEeChhHH--
Confidence 378999999999 8 9999999999999999999999999999999999 78899999999999999999997432
Q ss_pred CccccchhhHHhcCCC--ceEEeeccCCcccccccccCccHHHHhhccCCCCCCCCCCCCCCCCCCeEEEEecCCCCCCC
Q 010344 78 GRKFPLYSKVAEAGPL--KAVVLPVIGDDVGIQLRQQDVSWKDFLSCVDYHPGPKYYPPVYRPVDSVINILFSSGTTGEP 155 (512)
Q Consensus 78 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~p 155 (512)
+.+......... ...++. ++.+... ...........++++++|+|||||||.|
T Consensus 144 ----~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~-----~~~~~~~~~~~~~d~a~i~~TSGTTG~P 198 (480)
T 3t5a_A 144 ----DDVVQHVARRPGESPPSIIE----------------VDLLDLD-----APNGYTFKEDEYPSTAYLQYTSGSTRTP 198 (480)
T ss_dssp ----HHHHHTCC------CCEEEE----------------GGGSCTT-----CC---CCCCSSCCSEEEEECC------C
T ss_pred ----HHHHHHHhccccccccceeE----------------ecccccc-----cccCCCCCCCCCCceEEEEecCCCCCCC
Confidence 111111111110 001111 0000000 0111223345678899999999999999
Q ss_pred ceEEecCchhHHHHHHhhccccccC------CcEEEecCCccchhhhHH-HHhhhccCceEEEecCC---CchhhHHHHH
Q 010344 156 KAIPWTQLSPIRCAAEAWGHIDMKV------GDVYCWPTNLGWVMGPII-LFSSFLSGAALALYHGS---PLERSFGKFV 225 (512)
Q Consensus 156 K~v~~s~~~~~~~~~~~~~~~~~~~------~~~~~~~~p~~~~~~~~~-~~~~l~~G~~~~~~~~~---~~~~~~~~~l 225 (512)
|||++||+++.+++.+....+++.. +|++++.+|++|.+++.. ++.+++.|+++++.+.. .++..+++.+
T Consensus 199 KgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i 278 (480)
T 3t5a_A 199 AGVVMSHQNVRVNFEQLMSGYFADTDGIPPPNSALVSWLPFYHDMGLVIGICAPILGGYPAVLTSPVSFLQRPARWMHLM 278 (480)
T ss_dssp CCEEEEHHHHHHHHHHHHHHHCTTTTTCCCTTEEEEECCCTTSTTHHHHHTHHHHHHTCCEEECCHHHHHHCTHHHHHHT
T ss_pred cEEEEeHHHHHHHHHHHHHHhccccccCCCCCCeEEEeCCCcCccHHHHHHHHHHHcCCceEEECHHHHHHCHHHHHHHH
Confidence 9999999999998888777777776 999999999999999764 88999999999997633 3678999999
Q ss_pred HhcCceEEecchHHHHHHHcc----CCCCCCCcCceeEEEeecCCCCchhhHHHHHhhC-----CCCeeeecCCccccce
Q 010344 226 QDSGVSVLGTVPSLVKAWKNT----NCLQGLDWTKIRSFASTGETSNVDDDLWLASKAY-----YKPIIECCGGTELASS 296 (512)
Q Consensus 226 ~~~~~t~l~~~P~~~~~l~~~----~~~~~~~l~~l~~i~~~G~~l~~~~~~~~~~~~~-----~~~i~~~yG~tE~~~~ 296 (512)
+++++| +.++|+++..++.. ......++++||.+++||+++++++.+.+.+.++ ++++++.||+||++..
T Consensus 279 ~~~~~t-~~~~p~~~~~l~~~~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~ 357 (480)
T 3t5a_A 279 ASDFHA-FSAAPNFAFELAARRTTDDDMAGRDLGNILTILSGSERVQAATIKRFADRFARFNLQERVIRPSYWLAEATVY 357 (480)
T ss_dssp TSSSEE-EEEECHHHHHHHHHHCCTGGGTTCCCTTCCEEEECCTTCCHHHHHHHHHHSGGGTCCGGGEEEEEEETTTTEE
T ss_pred Hhhcee-EeeChHHHHHHHHhhcCcccccccchhhhheeeecCCcCCHHHHHHHHHHHhhcCCChhhcccccccccccee
Confidence 999999 88999988887653 2344677899999999999999999999998873 4579999999999987
Q ss_pred ecccCCCC------------------------CCcccccccccCCccEEEeCCC-CCCCCCCCCccccccc-cccccccc
Q 010344 297 YIQGSMLQ------------------------PQAFGAFSTATMTTGFVILDEL-GVPYPDDQPCVGEVGL-FPLYLGAT 350 (512)
Q Consensus 297 ~~~~~~~~------------------------~~~~~~~G~p~~~~~~~i~d~~-~~~~~~g~~~~Gel~v-~~~~~~~~ 350 (512)
.+...... .....++|+|++ ++++|+|++ |++++.|+ .|||+| ++..+.+|
T Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~G~p~~-~~~~ivd~~~g~~~~~g~--~GEl~v~g~~v~~GY 434 (480)
T 3t5a_A 358 VATSKPGQPPETVDFDTESLSAGHAKPCAGGGATSLISYMLPRS-PIVRIVDSDTCIECPDGT--VGEIWVHGDNVANGY 434 (480)
T ss_dssp EEECCTTSSCCEEEECHHHHHTTBCCCCCSSSCEEEECEECCSS-SEEEEEETTTTEECCTTB--CEEEEEESTTSCCCB
T ss_pred EeecccCCCcceEEecHHHhccCceeecCCCCcceeeecCcccC-CEEEEEcCCCCcCCCCCC--EEEEEEeCCcccccc
Confidence 66543321 123468999999 999999966 79999999 699999 66665532
Q ss_pred ccccccCcceeEEecC-----CcccCceeeeecceEEEeCCCeEEEEec
Q 010344 351 DRLLNADHEEVYFSGM-----PIYKGMHLRRHGDIIKRTVGGYIIVQGR 394 (512)
Q Consensus 351 ~~~~~~~~~~~~~~~~-----~~~~~~~~~~TGD~~~~~~~g~l~i~gR 394 (512)
+.+++.+...|..+ ...++++||+|||+|+++ ||+|+|+||
T Consensus 435 --~~~pe~t~~~f~~~~~~~~~~~~~~~w~~TGDlg~~d-dG~l~~~GR 480 (480)
T 3t5a_A 435 --WQKPDESERTFGGKIVTPSPGTPEGPWLRTGDSGFVT-DGKMFIIGR 480 (480)
T ss_dssp --TTBHHHHHHHHCBCCSSCCTTCCCCCBEEEEEEEEEE-TTEEEECC-
T ss_pred --ccCcchhHHHHhhhhccccCCCCCCCeeeccceeeEE-CCEEEEeCC
Confidence 33455555545321 122467899999999997 999999998
No 33
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*
Probab=100.00 E-value=7.6e-50 Score=399.41 Aligned_cols=325 Identities=18% Similarity=0.221 Sum_probs=258.7
Q ss_pred CCC-CCeEEEEecCCCCCCCceEEecCchhHHHHHHh---hccccccCCcEEEecCCccchhhhH-HHHhhhccCceEEE
Q 010344 137 RPV-DSVINILFSSGTTGEPKAIPWTQLSPIRCAAEA---WGHIDMKVGDVYCWPTNLGWVMGPI-ILFSSFLSGAALAL 211 (512)
Q Consensus 137 ~~~-~~~~~i~~TSGtTG~pK~v~~s~~~~~~~~~~~---~~~~~~~~~~~~~~~~p~~~~~~~~-~~~~~l~~G~~~~~ 211 (512)
.++ +++++++|||||||.||+|+++|+++.+..... ...+++.++|++++..|+.|..+.. .++.++..|+++++
T Consensus 82 ~~~~~~~a~i~~TSGTTG~PK~v~~th~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~ 161 (436)
T 3qov_A 82 GDMKRDGVRIHSSSGTTGNPTVIVHSQHDLDSWANLVARCLYMVGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTVP 161 (436)
T ss_dssp SCHHHHEEEEEECSCSSSCCCEEEEEHHHHHHHHHHHHHHHHHTTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEEC
T ss_pred CCCcCCeEEEEECCCcCCCCeEEEECHHHHHHHHHHHHHHHHHcCCCCCCEEEECcccccchhHHHHHHHHHHcCCEEEe
Confidence 345 889999999999999999999999987665544 3345889999999999987665554 57888999999998
Q ss_pred ecCCCchhhHHHHHHhcCceEEecchHHHHHHHccCCCCCCC--cCceeEEEeecCCCCchhhHHHHHhhCCCCeeeecC
Q 010344 212 YHGSPLERSFGKFVQDSGVSVLGTVPSLVKAWKNTNCLQGLD--WTKIRSFASTGETSNVDDDLWLASKAYYKPIIECCG 289 (512)
Q Consensus 212 ~~~~~~~~~~~~~l~~~~~t~l~~~P~~~~~l~~~~~~~~~~--l~~l~~i~~~G~~l~~~~~~~~~~~~~~~~i~~~yG 289 (512)
.+ ..+++.+++.|+++++|+++++|+++..|++.......+ ++++|.+++|||++++++.+.+++.+ ++++++.||
T Consensus 162 ~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~-g~~v~~~YG 239 (436)
T 3qov_A 162 AA-AGNSKRQIKFISDFKTTALHAIPSYAIRLAEVFQEEGIDPRETTLKTLVIGAEPHTDEQRRKIERML-NVKAYNSFG 239 (436)
T ss_dssp CC-SCCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHHHTTCCTTSSSCCEEEEESSCCCHHHHHHHHHHH-TSEEEEEEE
T ss_pred CC-CCCHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHcCCCcccCCccEEEEeCCcCCHHHHHHHHHHh-CccEEecCc
Confidence 75 457799999999999999999999999998764433433 78999999999999999999999988 799999999
Q ss_pred CccccceecccCCCCCCcccccccccCCccEEEeC-CCCCCCCCCCCcccccccccccccccccccccCcceeEEecCCc
Q 010344 290 GTELASSYIQGSMLQPQAFGAFSTATMTTGFVILD-ELGVPYPDDQPCVGEVGLFPLYLGATDRLLNADHEEVYFSGMPI 368 (512)
Q Consensus 290 ~tE~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d-~~~~~~~~g~~~~Gel~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (512)
+||+++..+...... ....|.|.+++.++|+| ++|++++.|+ .|||+++.....
T Consensus 240 ~TE~~~~~~~~~~~~---~~g~~~~~~~~~v~i~d~~~g~~~~~g~--~Gel~v~~~~~~-------------------- 294 (436)
T 3qov_A 240 MTEMNGPGVAFECQE---QNGMHFWEDCYLVEIIDPETGEPVPEGE--IGELVLTTLDRE-------------------- 294 (436)
T ss_dssp EGGGTEEEEEEECTT---CSSEEECTTTEEEEEECTTTCSBCSTTC--CEEEEEEESSCC--------------------
T ss_pred chhhcCCeeEEecCC---CCeeEEccCceEEEEEECCCCCCCCCCC--ceEEEEeccCcC--------------------
Confidence 999954322222111 12256677899999999 7899999999 699999532110
Q ss_pred ccCceeeeecceEEEeCCC------e---EEEEeccCceeeecceecchHHHHHhhhcCCcceeeeeEEeeCCCCCCCce
Q 010344 369 YKGMHLRRHGDIIKRTVGG------Y---IIVQGRADDTMNLGGIKTSSVEIERVCDGADESILETAAISVSPAGGGPEV 439 (512)
Q Consensus 369 ~~~~~~~~TGD~~~~~~~g------~---l~i~gR~~d~i~~~G~~v~~~~iE~~l~~~~~~v~~~~v~~~~~~~~~~~~ 439 (512)
....+||+|||+|+++++| + ++++||.||+||++|++|+|.+||++|. +||+|.+++|++.+++..+ +.
T Consensus 295 ~~~~~~y~TGDl~~~~~~gc~cG~~~~~il~i~GR~dd~ik~~G~~v~p~eiE~~l~-~~p~v~~~~vv~~~~~~~~-~~ 372 (436)
T 3qov_A 295 MMPLIRYRTRDLTRILPGKCPCGRTHLRIDRIKGRSDDMFIIKGVNIFPMQVEKILV-QFPELGSNYLITLETVNNQ-DE 372 (436)
T ss_dssp SSCCCSEEEEEEECEECSCCTTCCCSCEECCCCCBSSSCEEETTEEECHHHHHHHHT-TCTTEEEEEEEEEEEETTE-EE
T ss_pred CceEEEEEcCCEEEEcCCCCCCCCCccccCcccCccCCEEEECCEEECHHHHHHHHH-hCcCcCCcEEEEEEcCCCC-cE
Confidence 1134699999999999998 5 6999999999999999999999999998 8999999999999887777 89
Q ss_pred EEEEEEecCCCCCCc----HHHHHHHHHHHHHhccCCccceeeEEEec--CCCCCCCchHHHH
Q 010344 440 LVICVVLKKGFTSQP----VDKLKMIFSKAIQRNLNPLFKVSLVKIVL--EFPRTASNKLLRR 496 (512)
Q Consensus 440 ~~a~v~~~~~~~~~~----~~~l~~~~~~~~~~~l~~~~~p~~i~~~~--~iP~t~~GKi~r~ 496 (512)
++++|+++ +.. .+ .+++.+++++++.+.+ +.|..|.+++ +||+|+ ||++|.
T Consensus 373 l~a~v~~~-~~~-~~~~~~~~~l~~~l~~~l~~~~---~~p~~i~~v~~~~lP~t~-GKi~R~ 429 (436)
T 3qov_A 373 MIVEVELS-DLS-TDNYIELEKIRRDIIRQLKDEI---LVTPKVKLVKKGSLPQSE-GKAVRV 429 (436)
T ss_dssp EEEEEEEC-TTC-CCCHHHHHHHHHHHHHHHHHHH---SSCCEEEEECTTCCC--------CE
T ss_pred EEEEEEEc-Ccc-ccchhhHHHHHHHHHHHHHHhc---CCceEEEEeCCCcccCcC-CcceEE
Confidence 99999998 543 33 4566666766665432 6778899998 999999 999985
No 34
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}
Probab=100.00 E-value=1.7e-48 Score=390.47 Aligned_cols=328 Identities=18% Similarity=0.132 Sum_probs=261.6
Q ss_pred CCCCCeEEEEecCCCCCCCceEEecCchhHHHHHHhh---ccccccCCcEEEecCCcc-chhhhHHHHhhhccCceEEEe
Q 010344 137 RPVDSVINILFSSGTTGEPKAIPWTQLSPIRCAAEAW---GHIDMKVGDVYCWPTNLG-WVMGPIILFSSFLSGAALALY 212 (512)
Q Consensus 137 ~~~~~~~~i~~TSGtTG~pK~v~~s~~~~~~~~~~~~---~~~~~~~~~~~~~~~p~~-~~~~~~~~~~~l~~G~~~~~~ 212 (512)
.+++++++++|||||||.||+|+++|+++........ ..+++.++|++++..|+. |..++...+.++..|+++++.
T Consensus 89 ~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~~ 168 (443)
T 2y4o_A 89 VPREQVVRVHASSGTTGKPTVVGYTARDIDTWANVTARSIRAAGGRPGDTLHNAFGYGLFTGGLGIHYGAERLGCMVVPM 168 (443)
T ss_dssp SCGGGCCEEEEECCSSSSCEEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHHTCEEECC
T ss_pred CChhheEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEeccCcccccHHHHHHHHHHcCCEEEEC
Confidence 4568899999999999999999999999876554332 357889999999999984 666666688899999999886
Q ss_pred cCCCchhhHHHHHHhcCceEEecchHHHHHHHccCCCCCCC--cCceeEEEeecCCCCchhhHHHHHhhCCCCeeeecCC
Q 010344 213 HGSPLERSFGKFVQDSGVSVLGTVPSLVKAWKNTNCLQGLD--WTKIRSFASTGETSNVDDDLWLASKAYYKPIIECCGG 290 (512)
Q Consensus 213 ~~~~~~~~~~~~l~~~~~t~l~~~P~~~~~l~~~~~~~~~~--l~~l~~i~~~G~~l~~~~~~~~~~~~~~~~i~~~yG~ 290 (512)
+ ..+++.+++.|+++++|+++++|+++..|++.......+ ++++|.+++|||++++++.+.+++.+ ++++++.||+
T Consensus 169 ~-~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~-g~~v~~~YG~ 246 (443)
T 2y4o_A 169 S-GGQTEKQVQLIRDFEPKIILVTPSYMLNLIDEMVRQGMDPAESSLKIGIFGAEPWTQALRNEVETRV-GIDALDIYGL 246 (443)
T ss_dssp C-SCCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCGGGSSCCEEEEESSCCCHHHHHHHHHHH-TCEEEEEEEE
T ss_pred C-CCCHHHHHHHHHHhCCcEEEECHHHHHHHHHHHHHcCCCcccCCceEEEECCCcCCHHHHHHHHHHh-CcCEEeccCc
Confidence 6 347899999999999999999999999998764333333 47999999999999999999999888 7899999999
Q ss_pred ccc-cc-eecccCCCCCCcccccccccCCccEEEeC-CCCCCCCCCCCcccccccccccccccccccccCcceeEEecCC
Q 010344 291 TEL-AS-SYIQGSMLQPQAFGAFSTATMTTGFVILD-ELGVPYPDDQPCVGEVGLFPLYLGATDRLLNADHEEVYFSGMP 367 (512)
Q Consensus 291 tE~-~~-~~~~~~~~~~~~~~~~G~p~~~~~~~i~d-~~~~~~~~g~~~~Gel~v~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (512)
||+ +. +...+.. . ..+ .+.|.+++.++|+| ++|++++.|+ .|||+++..... .
T Consensus 247 TE~~g~~~~~~~~~-~--~~g-~~~~~~~~~~~i~d~~~g~~~~~G~--~Gel~v~~~t~~-------------~----- 302 (443)
T 2y4o_A 247 SEVMGPGVACECVE-T--KDG-PVIWEDHFYPEIIDPVTGEVLPDGS--QGELVFTSLTKE-------------A----- 302 (443)
T ss_dssp TTTTEEEEEEECTT-T--CCS-EEECTTTEEEEEECTTTCCBCCTTC--CEEEEEEESSCS-------------S-----
T ss_pred hhhcCCeEEeccCC-C--CCc-eEEccCCeEEEEEcCCCCCCCCCCC--ceEEEEeCCCcc-------------c-----
Confidence 997 43 2322221 1 112 45567899999999 5699999999 699999531110 0
Q ss_pred cccCceeeeecceEEEeCC-CeE-----EEEeccCceeeecceecchHHHHHhhhcCCcceeeeeEEeeCCCCCCCceEE
Q 010344 368 IYKGMHLRRHGDIIKRTVG-GYI-----IVQGRADDTMNLGGIKTSSVEIERVCDGADESILETAAISVSPAGGGPEVLV 441 (512)
Q Consensus 368 ~~~~~~~~~TGD~~~~~~~-g~l-----~i~gR~~d~i~~~G~~v~~~~iE~~l~~~~~~v~~~~v~~~~~~~~~~~~~~ 441 (512)
-..+||+|||+|+++++ |++ +++||.||+||++|++|+|.+||++|. .||+|.++++++++++..+ +.++
T Consensus 303 --~p~~~y~TGDl~~~~~~cG~~~~~l~~i~GR~~d~i~~~G~~v~p~eiE~~l~-~~p~V~~~~vv~~~~~~~~-~~~~ 378 (443)
T 2y4o_A 303 --MPVIRYRTRDLTALLPPTARAMRRLAKITGRSDDMLIVRGVNVFPSQIEEIVV-ALPLLSGQFQITLSRDGHM-DRLD 378 (443)
T ss_dssp --SCCSSEEEEEEECEECCSSSSSCEECCCCEESSCCEEETTEEECHHHHHHHHH-TSTTEEEEEEEEEEEETTE-EEEE
T ss_pred --ChhheeecCCEEEEcCCCCCCccccCccccccCCeEEECCEEECHHHHHHHHH-hCcCcCccEEEEEecCCCC-ceEE
Confidence 12469999999999999 986 899999999999999999999999998 8999999999988776666 7899
Q ss_pred EEEEecC--CCC--CCcHHHHHHHHHHHHHhccCCc-cceeeEEEe--cCCCCCCCchHHHHHH
Q 010344 442 ICVVLKK--GFT--SQPVDKLKMIFSKAIQRNLNPL-FKVSLVKIV--LEFPRTASNKLLRRVL 498 (512)
Q Consensus 442 a~v~~~~--~~~--~~~~~~l~~~~~~~~~~~l~~~-~~p~~i~~~--~~iP~t~~GKi~r~~l 498 (512)
++|++++ +.. ..+.+++.+++++++ +.| ..|..|.++ ++||+|++||++|+..
T Consensus 379 a~v~~~~~~~~~~~~~~~~~l~~~l~~~l----~~~~~~p~~v~~v~~~~lP~t~~GKi~r~~~ 438 (443)
T 2y4o_A 379 LAVELRSEAAASVTDGERAALARELQHRI----KTMVGVSSGVTVLAAGGIPATATGKARRVID 438 (443)
T ss_dssp EEEEECHHHHTTCCHHHHHHHHHHHHHHH----HHHTCCCCEEEEECTTCSCCCTTSCCCSEEE
T ss_pred EEEEECCcccccchhhHHHHHHHHHHHHH----HHHhCCceEEEEeCCCcccCccCCcceEEEe
Confidence 9999875 321 023455666665554 444 367778887 5999999999998643
No 35
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*
Probab=100.00 E-value=3.2e-48 Score=387.73 Aligned_cols=326 Identities=18% Similarity=0.153 Sum_probs=260.9
Q ss_pred CCCCCeEEEEecCCCCCCCceEEecCchhHHHHHHhh---ccccccCCcEEEecCCc-cchhhhHHHHhhhccCceEEEe
Q 010344 137 RPVDSVINILFSSGTTGEPKAIPWTQLSPIRCAAEAW---GHIDMKVGDVYCWPTNL-GWVMGPIILFSSFLSGAALALY 212 (512)
Q Consensus 137 ~~~~~~~~i~~TSGtTG~pK~v~~s~~~~~~~~~~~~---~~~~~~~~~~~~~~~p~-~~~~~~~~~~~~l~~G~~~~~~ 212 (512)
.+++++++++|||||||.||+|++||+++........ ..+++.++|++++..|+ .|..++...+.++..|+++++.
T Consensus 87 ~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~ 166 (437)
T 2y27_A 87 VPQDRISRIHASSGTTGKPTVVGYTAADIDTWANLVARSIRAAGARRGDKVHVSYGYGLFTGGLGAHYGAERAGLTVIPF 166 (437)
T ss_dssp SCGGGCCEEEECCCTTSSCCEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHTTCEEECC
T ss_pred CChhHeEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEcccccccccchHHHHHHHHcCCEEEeC
Confidence 4568899999999999999999999999876654332 35678999999999998 5777777788999999999886
Q ss_pred cCCCchhhHHHHHHhcCceEEecchHHHHHHHccCCCCCCC--cCceeEEEeecCCCCchhhHHHHHhhCCCCeeeecCC
Q 010344 213 HGSPLERSFGKFVQDSGVSVLGTVPSLVKAWKNTNCLQGLD--WTKIRSFASTGETSNVDDDLWLASKAYYKPIIECCGG 290 (512)
Q Consensus 213 ~~~~~~~~~~~~l~~~~~t~l~~~P~~~~~l~~~~~~~~~~--l~~l~~i~~~G~~l~~~~~~~~~~~~~~~~i~~~yG~ 290 (512)
+ ..+++.+++.|+++++|+++++|+++..|++.......+ ++++|.+++||+++++++.+.+++.+ ++++++.||+
T Consensus 167 ~-~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~-g~~v~~~YG~ 244 (437)
T 2y27_A 167 G-GGQTEKQVQLIQDFRPDIIMVTPSYMLSIADEIERQGLDPVQSSLRIGIFGAEPWTNDMRVAIEQRM-GIDAVDIYGL 244 (437)
T ss_dssp C-SCCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCGGGSSCCEEEEESSCCCHHHHHHHHHHH-TSEEEEEEEE
T ss_pred C-CCCHHHHHHHHHHhCCCEEEECHHHHHHHHHHHHHcCCCcccCCeeEEEEcCccCCHHHHHHHHHHH-CcCEEecCCc
Confidence 5 457899999999999999999999999998764333333 47999999999999999999999888 7899999999
Q ss_pred ccc-cc-eecccCCCCCCcccccccccCCccEEEeC-CCCCCCCCCCCcccccccccccccccccccccCcceeEEecCC
Q 010344 291 TEL-AS-SYIQGSMLQPQAFGAFSTATMTTGFVILD-ELGVPYPDDQPCVGEVGLFPLYLGATDRLLNADHEEVYFSGMP 367 (512)
Q Consensus 291 tE~-~~-~~~~~~~~~~~~~~~~G~p~~~~~~~i~d-~~~~~~~~g~~~~Gel~v~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (512)
||+ +. +...+.. . ...++.|.+++.++|+| ++|++++.|+ .|||+++..... .
T Consensus 245 TE~~g~~~~~~~~~-~---~~g~~~~~~~~~~~i~d~~~g~~~~~g~--~Gel~v~~~t~~-------------~----- 300 (437)
T 2y27_A 245 SEVMGPGVASECVE-T---KDGPTIWEDHFYPEIIDPETGEVLPDGE--LGELVFTSLTKE-------------A----- 300 (437)
T ss_dssp TTTTEEEEEECCTT-T---CSSCEECTTTEEEEEECTTTCCBCCTTC--CEEEEEEESSCS-------------S-----
T ss_pred hhhcCCeeEEecCC-C---CCceeEccCceEEEEEcCCCCCCCCCCC--ccEEEEecCCcC-------------C-----
Confidence 997 43 2322221 1 11255677899999999 4699999999 699999531100 0
Q ss_pred cccCceeeeecceEEEeC-CCeE-----EEEeccCceeeecceecchHHHHHhhhcCCcceeeeeEEeeCCCCCCCceEE
Q 010344 368 IYKGMHLRRHGDIIKRTV-GGYI-----IVQGRADDTMNLGGIKTSSVEIERVCDGADESILETAAISVSPAGGGPEVLV 441 (512)
Q Consensus 368 ~~~~~~~~~TGD~~~~~~-~g~l-----~i~gR~~d~i~~~G~~v~~~~iE~~l~~~~~~v~~~~v~~~~~~~~~~~~~~ 441 (512)
-..+||+|||+|++++ +|++ +++||.||+||++|++|+|.+||++|. .||+|.+++|++++++..+ +.++
T Consensus 301 --~~~~~y~TGDl~~~~~~~G~~~~~i~~i~GR~~d~i~~~G~~v~p~eiE~~l~-~~p~V~~~~vv~~~~~~~~-~~l~ 376 (437)
T 2y27_A 301 --LPIIRYRTRDLTRLLPGTARTMRRMEKITGRSDDMMIVRGVNVFPTQIEEQLL-KQRALAPHYQIVLTKEGPL-DVLT 376 (437)
T ss_dssp --SCCCSEEEEEEECEECCSSSSSCEECCCCEEGGGCEEETTEEECHHHHHHHHT-TCTTBCSCCEEEEEEETTE-EEEE
T ss_pred --chhheeecCCEEEEeCCCCCCccccCccccccCCeEEECCeEECHHHHHHHHH-hCcCcCccEEEEEeecCCC-ceEE
Confidence 1246999999999999 6985 899999999999999999999999998 8999999999998877666 8899
Q ss_pred EEEEecCCCCC--CcHHHHHHHHHHHHHhccCCc-cceeeEEEe--cCCCCCCCchHHHHH
Q 010344 442 ICVVLKKGFTS--QPVDKLKMIFSKAIQRNLNPL-FKVSLVKIV--LEFPRTASNKLLRRV 497 (512)
Q Consensus 442 a~v~~~~~~~~--~~~~~l~~~~~~~~~~~l~~~-~~p~~i~~~--~~iP~t~~GKi~r~~ 497 (512)
++|+++++... .+.+++.++++ ++|+.| ..|..|.++ ++||+|+ ||++|..
T Consensus 377 a~v~~~~~~~~~~~~~~~l~~~l~----~~l~~~~~~p~~v~~v~~~~lP~t~-GKi~r~~ 432 (437)
T 2y27_A 377 LNVEPCPETAPDTAAIQVAKQALA----YDIKSLIGVTAVINVLPVNGIERSV-GKARRVV 432 (437)
T ss_dssp EEECBCTTTTTCHHHHHHHHHHHH----HHHHHHHCCCEEEEECCTTCSCCCS-SSCCCEE
T ss_pred EEEEECCCccchhhhHHHHHHHHH----HHHHHhcCCceEEEEeCCCCccCCC-CcceEEE
Confidence 99998765421 12345555555 445455 477788888 5999999 9999863
No 36
>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*
Probab=99.97 E-value=9.3e-32 Score=262.39 Aligned_cols=237 Identities=15% Similarity=0.067 Sum_probs=178.7
Q ss_pred CCCCCeEEEEecCCCCCCCceEEecCchhHHHHHHh---hccccccCCcEEEecCCc-cchhhhHHHHhhhccCceEEEe
Q 010344 137 RPVDSVINILFSSGTTGEPKAIPWTQLSPIRCAAEA---WGHIDMKVGDVYCWPTNL-GWVMGPIILFSSFLSGAALALY 212 (512)
Q Consensus 137 ~~~~~~~~i~~TSGtTG~pK~v~~s~~~~~~~~~~~---~~~~~~~~~~~~~~~~p~-~~~~~~~~~~~~l~~G~~~~~~ 212 (512)
.+++++++++|||||||.||+|+++|+++.....+. ...+++.++|++++..|+ +|..++...+.++..|+ +++.
T Consensus 88 ~~~~~~a~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~g~~~~g~~~~~~~~~~G~-~v~~ 166 (369)
T 3hgu_A 88 LPADSHPQVYESGGTTGAPKYVVAYDAWIEALISWRMSGYQHRPGRPSGNTLAAIPTGPHIVGAINKERALRLGG-MFFS 166 (369)
T ss_dssp SCTTCCCEEEEECC---CCEEEEECHHHHHHHHHHHTTTTTTSTTCCCCEEEECSCCTTCHHHHHHHHHHHHTTS-CEEC
T ss_pred CCccccEEEEECCCCCCCCCEEEECHHHHHHHHHHHHhhHHhhCCCCcceEEEecCCCchhhhHHHHHHHHHcCC-EEEC
Confidence 367889999999999999999999999998887743 355678899999999999 89999888777789999 4443
Q ss_pred cCCCchh-----------------------hHHHHHHhcCceEEecchHHHHHHHccCCCCCCCcCceeEEEeecCCCCc
Q 010344 213 HGSPLER-----------------------SFGKFVQDSGVSVLGTVPSLVKAWKNTNCLQGLDWTKIRSFASTGETSNV 269 (512)
Q Consensus 213 ~~~~~~~-----------------------~~~~~l~~~~~t~l~~~P~~~~~l~~~~~~~~~~l~~l~~i~~~G~~l~~ 269 (512)
...++. .+++.|+++++|++.++|+++..|++.......+++++|.+++|||++++
T Consensus 167 -~~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~lr~i~~gGe~l~~ 245 (369)
T 3hgu_A 167 -IDIDPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQDIRFLVTTPPVLRELLKRPEVVLQMKQSLAQITLGGTELNL 245 (369)
T ss_dssp -CCCCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCEEEEEECHHHHHHHTTCHHHHHHHHHHCSEEEEESSCCCH
T ss_pred -ccCChHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhCCCCEEEeCHHHHHHHHhhhhhhccccCCeeEEEECCccCCH
Confidence 244444 77779999999999999999999987643333567899999999999999
Q ss_pred hhhHHHH-HhhCCCCeeeecCCccccceecccCCCCCCcccccccc------cCCccEEEeCC-CCCCCCCCCCcccccc
Q 010344 270 DDDLWLA-SKAYYKPIIECCGGTELASSYIQGSMLQPQAFGAFSTA------TMTTGFVILDE-LGVPYPDDQPCVGEVG 341 (512)
Q Consensus 270 ~~~~~~~-~~~~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~G~p------~~~~~~~i~d~-~~~~~~~g~~~~Gel~ 341 (512)
++.+.++ +.++++++++.||+||+++++..+.. .++|.| .++++++|+|+ +|++++.|+ .|||+
T Consensus 246 ~~~~~~~~~~~p~~~v~~~YG~TE~~~~~~~~~~------~~~G~~~~~~~~~~~~~v~ivD~~~g~~vp~G~--~GEl~ 317 (369)
T 3hgu_A 246 DEIKFIASEILPDCEFSASYGSTSALGVSRSLLI------TSESQQVIYDSFSPFITYDVVDSITAQTVEYGE--RGNVI 317 (369)
T ss_dssp HHHHHHHHHTCTTSEEEEEEEEGGGTEEEEECCB------CTTCSSCEEECCTTTEEEEEECTTTCSBCCTTC--EEEEE
T ss_pred HHHHHHHHHhCCCcEEEcccCchhhhcceecccc------ccCCCcccccCCCCCeEEEEECCCCCcCCCCCC--ceEEE
Confidence 9999999 88888999999999999876543321 147888 99999999997 899999999 79999
Q ss_pred cccccccccccccccCcceeEEecCCcccCceeeeecceEEEeCC--C-------eEEEEeccCceeeecce
Q 010344 342 LFPLYLGATDRLLNADHEEVYFSGMPIYKGMHLRRHGDIIKRTVG--G-------YIIVQGRADDTMNLGGI 404 (512)
Q Consensus 342 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~--g-------~l~i~gR~~d~i~~~G~ 404 (512)
|+..... ..+ -.|+|||+++..+. | .+..++|.++..++.|.
T Consensus 318 vt~l~~~------------~~l---------~ry~tgD~~~~~~~~~g~~~d~~~~v~~~~~~~~~~~i~gv 368 (369)
T 3hgu_A 318 VTHLSPW------------AFY---------PRVAERDTAIRLPGVSGFAGDRLADIEPLKISEGRKVIEGV 368 (369)
T ss_dssp EEEEETT------------EEE---------EEEEEEEEEEEECCSTTCSSCEEEEEEECC-----------
T ss_pred EEEcCcc------------ccc---------ccccCCceEEEecCCCCCcCcccccceeccccCCCceeeec
Confidence 9532111 011 14899999987543 2 34567777777777764
No 37
>3gxs_A Phenylacetate-coenzyme A ligase; APC62324.1, structural genomics, PSI-2, protein structure initiative; 1.43A {Bacteroides vulgatus atcc 8482} PDB: 3lax_A
Probab=99.58 E-value=2.9e-15 Score=117.23 Aligned_cols=97 Identities=19% Similarity=0.280 Sum_probs=76.8
Q ss_pred eccCceeeecceecchHHHHHhhhcCCcceeeeeEEeeCCCCCCCceEEEEEEecCCCCC---CcHHHHHHHHHHHHHhc
Q 010344 393 GRADDTMNLGGIKTSSVEIERVCDGADESILETAAISVSPAGGGPEVLVICVVLKKGFTS---QPVDKLKMIFSKAIQRN 469 (512)
Q Consensus 393 gR~~d~i~~~G~~v~~~~iE~~l~~~~~~v~~~~v~~~~~~~~~~~~~~a~v~~~~~~~~---~~~~~l~~~~~~~~~~~ 469 (512)
||.||+|+++|.+++|.+||++|. .||+|.++++++.+++.++ +.+++++++ ++... .+.+++.+.+++++.+.
T Consensus 1 GR~~D~Iiv~G~nv~P~eIE~~l~-~~p~v~~~~~v~v~~~~~~-e~l~~~ve~-~~~~~~~~~~~~~l~~~i~~~l~~~ 77 (109)
T 3gxs_A 1 SNADDMIILKGVNIFPIQIETILL-QFKELGSDYLITLETAESN-DEMTVEVEL-SQLFTDDYGRLQALTREITRQLKDE 77 (109)
T ss_dssp CGGGSCEEETTEEECHHHHHHHHH-TCTTEEEEEEEEEEEETTE-EEEEEEEEE-CTTCCCCHHHHHHHHHHHHHHHHHH
T ss_pred CCccCEEEECCEEECHHHHHHHHH-hCCCcCCcEEEEEEcCCCc-eEEEEEEEE-cCccccchhHHHHHHHHHHHHHHHh
Confidence 899999999999999999999998 8999999988888877666 889999998 55321 24567888888888765
Q ss_pred cCCccceeeEEEec--CCCCCCCchHHHH
Q 010344 470 LNPLFKVSLVKIVL--EFPRTASNKLLRR 496 (512)
Q Consensus 470 l~~~~~p~~i~~~~--~iP~t~~GKi~r~ 496 (512)
+. .+..+.+++ +||+| +||+.|.
T Consensus 78 ~~---~~~~v~~v~~~~lPrt-sGKi~R~ 102 (109)
T 3gxs_A 78 IL---VTPRVKLVPKGALPKS-EGKAVRV 102 (109)
T ss_dssp HS---SCCEEEEECTTCSCCC----CCCE
T ss_pred hC---CceEEEEECCCCccCC-CCceEEE
Confidence 54 234788887 89999 9999873
No 38
>3lax_A Phenylacetate-coenzyme A ligase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 1.43A {Bacteroides vulgatus}
Probab=99.56 E-value=5e-15 Score=116.15 Aligned_cols=96 Identities=21% Similarity=0.312 Sum_probs=75.5
Q ss_pred eccCceeeecceecchHHHHHhhhcCCcceeeeeEEeeCCCCCCCceEEEEEEecCCCCCCc---HHHHHHHHHHHHHhc
Q 010344 393 GRADDTMNLGGIKTSSVEIERVCDGADESILETAAISVSPAGGGPEVLVICVVLKKGFTSQP---VDKLKMIFSKAIQRN 469 (512)
Q Consensus 393 gR~~d~i~~~G~~v~~~~iE~~l~~~~~~v~~~~v~~~~~~~~~~~~~~a~v~~~~~~~~~~---~~~l~~~~~~~~~~~ 469 (512)
.|.||+|+++|.||+|.+||++|. +||+|.++++++.+++..+ +.+.++|+..++.. .+ .+++.+.+++++..+
T Consensus 1 srADDmIiv~G~nv~P~eIE~vl~-~~p~v~~~~vv~v~~~~~~-~~~~~~V~~~~~~~-~~~~~~~~l~~~i~~~l~~~ 77 (109)
T 3lax_A 1 SNADDMIILKGVNIFPIQIETILL-QFKELGSDYLITLETAESN-DEMTVEVELSQLFT-DDYGRLQALTREITRQLKDE 77 (109)
T ss_dssp CGGGSCEEETTEEECHHHHHHHHH-TCTTEEEEEEEEEEEETTE-EEEEEEEEECTTCC-CCHHHHHHHHHHHHHHHHHH
T ss_pred CCcCEEEEECCEEECHHHHHHHHH-hCCCcccceEEEEeccccc-eeEEEEEEEeeccc-cccchhhhhHHHHHHHHHHH
Confidence 489999999999999999999998 9999999999999988888 89999999987654 33 345666777777665
Q ss_pred cCCccceeeEEEe--cCCCCCCCchHHH
Q 010344 470 LNPLFKVSLVKIV--LEFPRTASNKLLR 495 (512)
Q Consensus 470 l~~~~~p~~i~~~--~~iP~t~~GKi~r 495 (512)
+. .+..+.++ ++||+| +||++|
T Consensus 78 ~g---v~~~v~~v~~~~lPrt-sGKi~R 101 (109)
T 3lax_A 78 IL---VTPRVKLVPKGALPKS-EGKAVR 101 (109)
T ss_dssp HS---SCCEEEEECTTCSCCC----CCC
T ss_pred hC---CccceEEEcCCeecCC-CCCcch
Confidence 43 34456666 489998 799977
No 39
>4b2g_A GH3-1 auxin conjugating enzyme; signaling protein, ignaling protein, adenylate, amino acid conjugation, plant growth; HET: V1N; 2.40A {Vitis vinifera}
Probab=99.00 E-value=1.2e-08 Score=102.08 Aligned_cols=71 Identities=23% Similarity=0.228 Sum_probs=51.4
Q ss_pred eeecceEEEeC----CCeEEEEeccCceeeecceecchHHHHHhhhcCC-----c--ceeeeeEEeeCCCCCCCceEEEE
Q 010344 375 RRHGDIIKRTV----GGYIIVQGRADDTMNLGGIKTSSVEIERVCDGAD-----E--SILETAAISVSPAGGGPEVLVIC 443 (512)
Q Consensus 375 ~~TGD~~~~~~----~g~l~i~gR~~d~i~~~G~~v~~~~iE~~l~~~~-----~--~v~~~~v~~~~~~~~~~~~~~a~ 443 (512)
|++||+.++.. ..++.|+||.++++++.|+++++.+||+++.... . .|.|..+........ ..-+.+
T Consensus 412 Yr~GD~v~v~~f~~~~p~i~~~gR~~~~l~~~Geki~~~~v~~av~~a~~~l~~~g~~l~eft~~~d~~~~p--~Hyv~~ 489 (609)
T 4b2g_A 412 YRVGDILRVTGFHNSAPQFHFVRRKNVLLSIDSDKTDEAELQKAVDNASKLLREVNTSVVEYTSFADTKTIP--GHYVIY 489 (609)
T ss_dssp EEEEEEEEEEEEETTEEEEEEEEETTCCBCSSSCCBCHHHHHHHHHHHHHGGGGTTEEEEEEEEEEECSSSS--CEEEEE
T ss_pred eecCCEEEEeecCCCCcEEEEEEecCCeEEccccCCCHHHHHHHHHHHHHhhhccCCeEEEEEEecCCCCCC--CcEEEE
Confidence 89999999874 4689999999999999999999999999987322 2 366666543222211 244555
Q ss_pred EEec
Q 010344 444 VVLK 447 (512)
Q Consensus 444 v~~~ 447 (512)
+++.
T Consensus 490 wEl~ 493 (609)
T 4b2g_A 490 WELL 493 (609)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 6664
No 40
>4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A*
Probab=98.97 E-value=6e-09 Score=104.23 Aligned_cols=133 Identities=16% Similarity=0.078 Sum_probs=81.7
Q ss_pred cCc---eeEEEeecCCCCchhhHHHHHhhCCCCee-eecCCccccceecccCCCCCCccccccc-ccC-CccEEEeCCC-
Q 010344 254 WTK---IRSFASTGETSNVDDDLWLASKAYYKPII-ECCGGTELASSYIQGSMLQPQAFGAFST-ATM-TTGFVILDEL- 326 (512)
Q Consensus 254 l~~---l~~i~~~G~~l~~~~~~~~~~~~~~~~i~-~~yG~tE~~~~~~~~~~~~~~~~~~~G~-p~~-~~~~~i~d~~- 326 (512)
++. +..++.||. ..-...++..+++.++. ..|++||... .+......+ +...+. .++ ..-.+.++.+
T Consensus 296 WPnl~~l~~~~~G~~---~~Y~~~l~~~~g~~p~~~~~Y~ASEg~~-gi~~~p~~~--~~~~~~~L~~~~~ffEFip~~~ 369 (581)
T 4eql_A 296 WPNTKYIETVVTGSM---GQYVPMLNYYCNDLPLVSTTYGSSETTF-GINLDPLCK--PEDVSYTFMPNMSYFEFIPMDG 369 (581)
T ss_dssp STTCCEEEEECSGGG---GGGHHHHHHHHTTCCEECCEEECSSCEE-EECSCTTSC--GGGCCEEECTTSSEEEEEECST
T ss_pred CCCCcEEEEEcCCCh---HHHHHHHHHHcCCCccccCcccccccee-eeccCCCCC--cccCceeecCCcEEEEEEeccc
Confidence 456 555566662 33344555555677776 9999999532 222211111 111121 112 2445666421
Q ss_pred ---C-----CCCCCCCCcccccccccccccccccccccCcceeEEecCCcccCceeeeecceEEEeC----CCeEEEEec
Q 010344 327 ---G-----VPYPDDQPCVGEVGLFPLYLGATDRLLNADHEEVYFSGMPIYKGMHLRRHGDIIKRTV----GGYIIVQGR 394 (512)
Q Consensus 327 ---~-----~~~~~g~~~~Gel~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~----~g~l~i~gR 394 (512)
. ..+..|+ .+|++++.. .+ .|+ |++||+.+... ..++.|+||
T Consensus 370 ~~~~~~v~l~eVe~G~--~YelViTt~-~G-------------L~R----------Yr~GD~v~v~~f~~~~p~i~f~gR 423 (581)
T 4eql_A 370 GDKNDVVDLEDVKLGC--TYEPVVTNF-AG-------------LYR----------MRVGDIVLVTGFYNNAPQFKFVRR 423 (581)
T ss_dssp TCCSSCEEGGGCCTTC--EEEEEEECS-SS-------------CCS----------EECCEEEEEEEEETTEEEEEEEEE
T ss_pred cCCCcEeCHHHcCCCc--eEEEEEeec-cc-------------eee----------EEcCCEEEEcccCCCCcEEEEEEe
Confidence 1 1345666 577777322 01 222 89999999875 457899999
Q ss_pred cCceeeecceecchHHHHHhhhcC
Q 010344 395 ADDTMNLGGIKTSSVEIERVCDGA 418 (512)
Q Consensus 395 ~~d~i~~~G~~v~~~~iE~~l~~~ 418 (512)
.++++.+.|+++++.+||+++.+.
T Consensus 424 ~~~~l~~~Gekl~~~~v~~al~~a 447 (581)
T 4eql_A 424 ENVVLSIDSDKTNEEDLFKAVSQA 447 (581)
T ss_dssp TTEEECSSSCCEEHHHHHHHHHHC
T ss_pred cCCEEEeeeeECCHHHHHHHHHHH
Confidence 999999999999999999999743
No 41
>4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A {Arabidopsis thaliana}
Probab=98.92 E-value=2.2e-08 Score=99.87 Aligned_cols=162 Identities=14% Similarity=0.035 Sum_probs=92.6
Q ss_pred cCceeE--EEeecCCCCchhhHHHHHhhCCCCee-eecCCccccceecccCCCCCCccccccc-ccC-CccEEEeC--CC
Q 010344 254 WTKIRS--FASTGETSNVDDDLWLASKAYYKPII-ECCGGTELASSYIQGSMLQPQAFGAFST-ATM-TTGFVILD--EL 326 (512)
Q Consensus 254 l~~l~~--i~~~G~~l~~~~~~~~~~~~~~~~i~-~~yG~tE~~~~~~~~~~~~~~~~~~~G~-p~~-~~~~~i~d--~~ 326 (512)
++.+++ ++.+|. + ..-...++..+++.++. ..|++||... .+......+ ++..+. .+| ..-.+.+. +.
T Consensus 301 WPnl~~i~~~~~G~-~-~~Y~~~l~~~~g~~p~~~~~Y~ASEg~~-gi~~~p~~~--~~~~~~~L~p~~~ffEFiP~~~~ 375 (581)
T 4epl_A 301 FPNAKYVYGIMTGS-M-EPYVPKLRHYAGDLPLVSHDYGSSEGWI-AANVTPRLS--PEEATFAVIPNLGYFEFLPVSET 375 (581)
T ss_dssp CTTCCCEEEECSGG-G-GGGHHHHHHHHTTSCEEECCEEETTEEE-EECCCTTSC--TTTCCEEECTTSCEEEEEEC---
T ss_pred CCCCceEEEEeCCC-h-HHHHHHHHHHcCCCccccCceeccceee-eeecCCCCC--ccccceeecCCcEEEEEEecccc
Confidence 456653 344442 2 23334555555577776 9999999633 222221111 111111 112 23344543 21
Q ss_pred C---------CCCCCCCCcccccccccccccccccccccCcceeEEecCCcccCceeeeecceEEEeCC----CeEEEEe
Q 010344 327 G---------VPYPDDQPCVGEVGLFPLYLGATDRLLNADHEEVYFSGMPIYKGMHLRRHGDIIKRTVG----GYIIVQG 393 (512)
Q Consensus 327 ~---------~~~~~g~~~~Gel~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~----g~l~i~g 393 (512)
+ ..+..|+ .+|++++..- + .|+ |++||+.++... .++.|+|
T Consensus 376 ~~~~~~~v~l~eve~G~--~YelviTt~~-G-------------L~R----------Yr~GD~v~v~g~~~~~p~~~~~g 429 (581)
T 4epl_A 376 GEGEEKPVGLTQVKIGE--EYEVVITNYA-G-------------LYR----------YRLGDVVKVIGFYNNTPQLKFIC 429 (581)
T ss_dssp ----CCCEEGGGCCTTC--EEEEEEESTT-S-------------CSS----------EEEEEEEEEEEEETTEEEEEEEE
T ss_pred cCCCCceeeHHHcCCCC--eEEEEEeecc-c-------------eee----------EEcCCEEEEecccCCCcEEEEEe
Confidence 1 2466676 5888874221 1 222 899999998642 5789999
Q ss_pred ccCceeeecceecchHHHHHhhhcC-----Cc--ceeeeeEEeeCCCCCCCceEEEEEEecC
Q 010344 394 RADDTMNLGGIKTSSVEIERVCDGA-----DE--SILETAAISVSPAGGGPEVLVICVVLKK 448 (512)
Q Consensus 394 R~~d~i~~~G~~v~~~~iE~~l~~~-----~~--~v~~~~v~~~~~~~~~~~~~~a~v~~~~ 448 (512)
|.++++++.|+++++.+||+++... .. .|.|..+........ ..-+.++++..
T Consensus 430 R~~~~l~~~Ge~~~~~~v~~al~~a~~~l~~~~~~l~eft~~~d~~~~p--~hyv~~wE~~~ 489 (581)
T 4epl_A 430 RRNLILSINIDKNTERDLQLSVESAAKRLSEEKIEVIDFSSYIDVSTDP--GHYAIFWEISG 489 (581)
T ss_dssp ETTCCBCSSSCCBCHHHHHHHHHHHHHHHHTTTCCEEEEEEEEECSSSS--CEEEEEEEESS
T ss_pred ecCCeEEeeeeECCHHHHHHHHHHHHHhhcccCCeEEEEEEecCCCCCC--CcEEEEEeecC
Confidence 9999999999999999999998732 12 366766654322211 24455566643
No 42
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A
Probab=80.73 E-value=2.8 Score=42.11 Aligned_cols=84 Identities=10% Similarity=-0.063 Sum_probs=65.0
Q ss_pred EecCchhHHHHHHhhc---cccccCCcEEEecCCccchhhhHHHHhhhccCceEEEecCCCchhhHHHHHHhcCceEEec
Q 010344 159 PWTQLSPIRCAAEAWG---HIDMKVGDVYCWPTNLGWVMGPIILFSSFLSGAALALYHGSPLERSFGKFVQDSGVSVLGT 235 (512)
Q Consensus 159 ~~s~~~~~~~~~~~~~---~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~l~~~~~t~l~~ 235 (512)
.+|.+.+...+..+.. ..++.++|++...++-+.. ....+++++..|+..+.++.....+++...+++.++++++.
T Consensus 50 ~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e-~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~ 128 (550)
T 3rix_A 50 NITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQ-FFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVFV 128 (550)
T ss_dssp EEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCTT-THHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEEE
T ss_pred EeEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCccc-HHHHHHHHHHcCCEEeecCCcCCHHHHHHHHHhcCCeEEEE
Confidence 5788877665554443 4588999999888775432 33457899999999999888888899999999999999998
Q ss_pred chHHHHHH
Q 010344 236 VPSLVKAW 243 (512)
Q Consensus 236 ~P~~~~~l 243 (512)
.+..+..+
T Consensus 129 ~~~~~~~~ 136 (550)
T 3rix_A 129 SKKGLQKI 136 (550)
T ss_dssp CGGGHHHH
T ss_pred cHHHHHHH
Confidence 87765544
No 43
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Probab=78.22 E-value=6.9 Score=39.01 Aligned_cols=97 Identities=14% Similarity=0.006 Sum_probs=70.3
Q ss_pred CCCCeEEEEecCCCCCCCceEEecCchhHHHHHHhhc---cccccCCcEEEecCCccchhhhHHHHhhhccCceEEEecC
Q 010344 138 PVDSVINILFSSGTTGEPKAIPWTQLSPIRCAAEAWG---HIDMKVGDVYCWPTNLGWVMGPIILFSSFLSGAALALYHG 214 (512)
Q Consensus 138 ~~~~~~~i~~TSGtTG~pK~v~~s~~~~~~~~~~~~~---~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~G~~~~~~~~ 214 (512)
.++.++++.. .+| -.+|.+.+...+..+.. ..++.++|++...++-+.. ....+++++..|+..+.++.
T Consensus 35 ~p~~~a~~~~---~~~----~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~-~~~~~la~~~~Gav~vpl~~ 106 (536)
T 3ni2_A 35 HSSKPCLING---ANG----DVYTYADVELTARRVASGLNKIGIQQGDVIMLFLPSSPE-FVLAFLGASHRGAIITAANP 106 (536)
T ss_dssp STTSEEEEET---TTC----CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHH-HHHHHHHHHHHTCEEEECCT
T ss_pred CCCceEEEEC---CCC----CEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHH-HHHHHHHHHHhCCEEeccCC
Confidence 4666776542 222 25788877665544443 4588999999887776432 33447899999999999888
Q ss_pred CCchhhHHHHHHhcCceEEecchHHHHH
Q 010344 215 SPLERSFGKFVQDSGVSVLGTVPSLVKA 242 (512)
Q Consensus 215 ~~~~~~~~~~l~~~~~t~l~~~P~~~~~ 242 (512)
....+++...+++.++..++..+.....
T Consensus 107 ~~~~~~l~~~l~~~~~~~~i~~~~~~~~ 134 (536)
T 3ni2_A 107 FSTPAELAKHAKASRAKLLITQACYYEK 134 (536)
T ss_dssp TCCHHHHHHHHHHHTEEEEEECGGGTHH
T ss_pred CCCHHHHHHHHHhcCCEEEEEChHHHHH
Confidence 8888999999999999999987755443
No 44
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Probab=77.28 E-value=9.8 Score=38.04 Aligned_cols=103 Identities=9% Similarity=-0.040 Sum_probs=72.6
Q ss_pred CCCCeEEEEecCCC-CCCCceEEecCchhHHHHHHhh---ccccccCCcEEEecCCccchhhhHHHHhhhccCceEEEec
Q 010344 138 PVDSVINILFSSGT-TGEPKAIPWTQLSPIRCAAEAW---GHIDMKVGDVYCWPTNLGWVMGPIILFSSFLSGAALALYH 213 (512)
Q Consensus 138 ~~~~~~~i~~TSGt-TG~pK~v~~s~~~~~~~~~~~~---~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~G~~~~~~~ 213 (512)
.++.+|++....+. .+.. -.+|.+.+...+..+. ...++.++|++...++-+.. ....+++++..|+..+.++
T Consensus 32 ~p~~~A~~~~~~~~~~~~~--~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~-~~~~~lA~~~~G~~~vpl~ 108 (549)
T 3g7s_A 32 FGEKTAIISAEPKFPSEFP--ESMNFLEICEVTKKLASGISRKGVRKGEHVGVCIPNSID-YVMTIYALWRVAATPVPIN 108 (549)
T ss_dssp HTTSEEEEEESSCCCCSSC--SEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHH-HHHHHHHHHHTTCEEEECC
T ss_pred CCCceEEEeCCCccccccc--ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHH-HHHHHHHHHHhCCEEEccC
Confidence 35667776653221 2222 3567777765554443 34588999999888766432 2344789999999999998
Q ss_pred CCCchhhHHHHHHhcCceEEecchHHHHHH
Q 010344 214 GSPLERSFGKFVQDSGVSVLGTVPSLVKAW 243 (512)
Q Consensus 214 ~~~~~~~~~~~l~~~~~t~l~~~P~~~~~l 243 (512)
.....+++...+++.+++.++..+.....+
T Consensus 109 ~~~~~~~l~~il~~~~~~~~i~~~~~~~~~ 138 (549)
T 3g7s_A 109 PMYKSFELEHILNDSEATTLVVHSMLYENF 138 (549)
T ss_dssp TTCCHHHHHHHHHHTTCSEEEEEGGGHHHH
T ss_pred CCCCHHHHHHHHHhcCCCEEEEChHHHHHH
Confidence 888889999999999999999887665544
No 45
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*
Probab=76.02 E-value=11 Score=37.57 Aligned_cols=99 Identities=14% Similarity=-0.002 Sum_probs=70.9
Q ss_pred CCCeEEEEecCCCCCCCceEEecCchhHHHHHHhh---ccccccCCcEEEecCCccchhhhHHHHhhhccCceEEEecCC
Q 010344 139 VDSVINILFSSGTTGEPKAIPWTQLSPIRCAAEAW---GHIDMKVGDVYCWPTNLGWVMGPIILFSSFLSGAALALYHGS 215 (512)
Q Consensus 139 ~~~~~~i~~TSGtTG~pK~v~~s~~~~~~~~~~~~---~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~ 215 (512)
++.++++....+ ..-.+|.+.+...+..+. ...++.++|++...++-+.. ....+++++..|+..+.++..
T Consensus 32 p~~~a~~~~~~~-----~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e-~~~~~lA~~~~Gav~vpl~~~ 105 (541)
T 1v25_A 32 GRKEVVSRLHTG-----EVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFR-HLEAYFAVPGMGAVLHTANPR 105 (541)
T ss_dssp TTCEEEEECTTS-----CEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHH-HHHHHHHHHHTTCEEEECCTT
T ss_pred CCceEEEEecCC-----CCceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHH-HHHHHHHHHhcCcEEEecCcc
Confidence 455666543211 234678887766554443 34588999999888775532 334478899999999999888
Q ss_pred CchhhHHHHHHhcCceEEecchHHHHHH
Q 010344 216 PLERSFGKFVQDSGVSVLGTVPSLVKAW 243 (512)
Q Consensus 216 ~~~~~~~~~l~~~~~t~l~~~P~~~~~l 243 (512)
...+++...+++.++..++..+.....+
T Consensus 106 ~~~~~l~~~l~~~~~~~vi~~~~~~~~~ 133 (541)
T 1v25_A 106 LSPKEIAYILNHAEDKVLLFDPNLLPLV 133 (541)
T ss_dssp SCHHHHHHHHHHHTCSEEEECGGGHHHH
T ss_pred cCHHHHHHHHHhCCCcEEEEChhHHHHH
Confidence 8889999999999999999887765443
No 46
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0
Probab=75.64 E-value=8.4 Score=38.04 Aligned_cols=95 Identities=13% Similarity=-0.039 Sum_probs=71.0
Q ss_pred CCCCeEEEEecCCCCCCCceEEecCchhHHHHHHhhc---cccccCCcEEEecCCccchhhhHHHHhhhccCceEEEecC
Q 010344 138 PVDSVINILFSSGTTGEPKAIPWTQLSPIRCAAEAWG---HIDMKVGDVYCWPTNLGWVMGPIILFSSFLSGAALALYHG 214 (512)
Q Consensus 138 ~~~~~~~i~~TSGtTG~pK~v~~s~~~~~~~~~~~~~---~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~G~~~~~~~~ 214 (512)
.++.+|++. . +-.+|.+.+...+..+.. ..++.++|++...++-+.. ....+++++..|+..+.++.
T Consensus 19 ~pd~~Al~~--~-------~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~-~~~~~lA~~~~Ga~~vpl~~ 88 (509)
T 3ivr_A 19 FPDRTAFMV--D-------GVRLTHRDYLARAERLASGLLRDGVHTGDRVAILSQNCSE-MIELIGAVALIGAILLPVNY 88 (509)
T ss_dssp STTSEEEEE--T-------TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHH-HHHHHHHHHHTTCEEEECCT
T ss_pred CCCceEEEE--C-------CcEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHH-HHHHHHHHHHhCCEEEecCC
Confidence 456677664 1 235788887665554443 4588999999887766532 33458899999999999988
Q ss_pred CCchhhHHHHHHhcCceEEecchHHHHH
Q 010344 215 SPLERSFGKFVQDSGVSVLGTVPSLVKA 242 (512)
Q Consensus 215 ~~~~~~~~~~l~~~~~t~l~~~P~~~~~ 242 (512)
....+++...+++.++..++..+.....
T Consensus 89 ~~~~~~l~~~l~~~~~~~vi~~~~~~~~ 116 (509)
T 3ivr_A 89 RLNADEIAFVLGDGAPSVVVAGTDYRDI 116 (509)
T ss_dssp TSCHHHHHHHHHHHCEEEEEECSTTHHH
T ss_pred CCCHHHHHHHHHhcCceEEEECcchhhh
Confidence 8888999999999999999988776554
No 47
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A
Probab=73.16 E-value=16 Score=35.50 Aligned_cols=107 Identities=12% Similarity=0.014 Sum_probs=72.9
Q ss_pred CCCCeEEEEecCCCCCCCceEEecCchhHHHHHHhhc---cccccCCcEEEecCCccchhhhHHHHhhhccCceEEEecC
Q 010344 138 PVDSVINILFSSGTTGEPKAIPWTQLSPIRCAAEAWG---HIDMKVGDVYCWPTNLGWVMGPIILFSSFLSGAALALYHG 214 (512)
Q Consensus 138 ~~~~~~~i~~TSGtTG~pK~v~~s~~~~~~~~~~~~~---~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~G~~~~~~~~ 214 (512)
.++.+|++.........-....+|.+.+...+..+.. ..+. ++|++...++-+.. ....+++++..|+..+.++.
T Consensus 37 ~pd~~Al~~~~~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~e-~~~~~lA~~~~G~v~vpl~~ 114 (480)
T 3t5a_A 37 QPHDPAFTFMDYEQDWDGVAITLTWSQLYRRTLNVAQELSRCGS-TGDRVVISAPQGLE-YVVAFLGALQAGRIAVPLSV 114 (480)
T ss_dssp STTSEEEEEEETTTCTTCEEEEEEHHHHHHHHHHHHHHHTTSSC-TTCEEEEECCSSHH-HHHHHHHHHHTTCEEEEECS
T ss_pred CCCCceEEEecccCCCCCceEEEcHHHHHHHHHHHHHHHHhcCC-CCCEEEEEcCCcHH-HHHHHHHHHHhCcEEEeeCC
Confidence 4566777765422111113356888887766554443 3454 89998877765432 23447899999999998875
Q ss_pred ---CCchhhHHHHHHhcCceEEecchHHHHHHHcc
Q 010344 215 ---SPLERSFGKFVQDSGVSVLGTVPSLVKAWKNT 246 (512)
Q Consensus 215 ---~~~~~~~~~~l~~~~~t~l~~~P~~~~~l~~~ 246 (512)
....+++...+++.++..++..+.....+...
T Consensus 115 ~~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~ 149 (480)
T 3t5a_A 115 PQGGVTDERSDSVLSDSSPVAILTTSSAVDDVVQH 149 (480)
T ss_dssp CCSCTTCCHHHHHHHHHCCSEEEECTTTHHHHHHT
T ss_pred CCccchHHHHHHHHHhCCCCEEEeChhHHHHHHHH
Confidence 34567899999999999999998877766543
No 48
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Probab=70.93 E-value=15 Score=36.14 Aligned_cols=98 Identities=8% Similarity=-0.046 Sum_probs=68.5
Q ss_pred CCCCeEEEEecCCCCCCCceEEecCchhHHHHHHhhc---cccccCCcEEEecCCccchhhhHHHHhhhccCceEEEecC
Q 010344 138 PVDSVINILFSSGTTGEPKAIPWTQLSPIRCAAEAWG---HIDMKVGDVYCWPTNLGWVMGPIILFSSFLSGAALALYHG 214 (512)
Q Consensus 138 ~~~~~~~i~~TSGtTG~pK~v~~s~~~~~~~~~~~~~---~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~G~~~~~~~~ 214 (512)
.++.++++.. .+ +..+|.+.+...+..... ..++.++|++...++-+.. ....+++++..|+..+.++.
T Consensus 15 ~p~~~a~~~~---~~----~~~~Ty~el~~~~~~~A~~L~~~Gv~~gd~V~i~~~~~~~-~~~~~lA~~~~G~~~vpl~~ 86 (504)
T 1t5h_X 15 APDHCALAVP---AR----GLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSAD-VVIAILALHRLGAVPALLNP 86 (504)
T ss_dssp CTTSEEEEET---TT----TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHH-HHHHHHHHHHHTCEEEEECT
T ss_pred CCCceEEEEc---CC----CceeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHH-HHHHHHHHHHhCcEEEecCC
Confidence 3455666542 11 246788887665544443 4578899999888776533 23447899999999999988
Q ss_pred CCchhhHHHHHHhcCceEEec--chHHHHHH
Q 010344 215 SPLERSFGKFVQDSGVSVLGT--VPSLVKAW 243 (512)
Q Consensus 215 ~~~~~~~~~~l~~~~~t~l~~--~P~~~~~l 243 (512)
...++++...+++.+++.++. .+.....+
T Consensus 87 ~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~ 117 (504)
T 1t5h_X 87 RLKSAELAELIKRGEMTAAVIAVGRQVADAI 117 (504)
T ss_dssp TSCHHHHHHHHHHTTCSEEEECC--CHHHHH
T ss_pred ccChHHHHHHHhhcCCcEEEEecchhhhhhh
Confidence 888899999999999999888 55544433
No 49
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Probab=69.87 E-value=19 Score=36.13 Aligned_cols=101 Identities=10% Similarity=-0.043 Sum_probs=71.3
Q ss_pred CCCCeEEEEecCCCCCCCceEEecCchhHHHHHHhhc---cc-cccCCcEEEecCCccchhhhHHHHhhhccCceEEEec
Q 010344 138 PVDSVINILFSSGTTGEPKAIPWTQLSPIRCAAEAWG---HI-DMKVGDVYCWPTNLGWVMGPIILFSSFLSGAALALYH 213 (512)
Q Consensus 138 ~~~~~~~i~~TSGtTG~pK~v~~s~~~~~~~~~~~~~---~~-~~~~~~~~~~~~p~~~~~~~~~~~~~l~~G~~~~~~~ 213 (512)
.++.++++.... .| ....+|.+.+...+..+.. .. ++.++|++...++-+.. ....+++++..|+..+.++
T Consensus 56 ~p~~~al~~~~~--~g--~~~~~Ty~el~~~~~~lA~~L~~~~Gv~~gd~V~i~~~n~~e-~~~~~lA~~~~Ga~~vpl~ 130 (570)
T 3c5e_A 56 RPPSPALWWVNG--KG--KELMWNFRELSENSQQAANVLSGACGLQRGDRVAVVLPRVPE-WWLVILGCIRAGLIFMPGT 130 (570)
T ss_dssp SCCCEEEEEECS--SS--CEEEEEHHHHHHHHHHHHHHHHTTTCCCTTCEEEEECCSCHH-HHHHHHHHHHHTCEEEECC
T ss_pred CCCceEEEEEcC--CC--ceeEEeHHHHHHHHHHHHHHHHHccCCCCCCEEEEEcCCCHH-HHHHHHHHHHcCeEEEecC
Confidence 455677665421 12 2346788877655544433 34 88899999888776532 2344789999999999988
Q ss_pred CCCchhhHHHHHHhcCceEEecchHHHHHH
Q 010344 214 GSPLERSFGKFVQDSGVSVLGTVPSLVKAW 243 (512)
Q Consensus 214 ~~~~~~~~~~~l~~~~~t~l~~~P~~~~~l 243 (512)
.....+++...+++.++..++..+.....+
T Consensus 131 ~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~ 160 (570)
T 3c5e_A 131 IQMKSTDILYRLQMSKAKAIVAGDEVIQEV 160 (570)
T ss_dssp TTCCHHHHHHHHHHHTCSEEEEETTTHHHH
T ss_pred CCCCHHHHHHHHHhcCCeEEEechHHHHHH
Confidence 877888999999999999999877665544
No 50
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*
Probab=69.72 E-value=19 Score=34.62 Aligned_cols=66 Identities=11% Similarity=0.089 Sum_probs=51.8
Q ss_pred HHHHhcc-CCCCCEEEEEcCC--CHHHHHHHHHHHHhcceEeecCCCcCHHHHHHHHHhcCccEEEeccc
Q 010344 7 ANALDTM-FSKGDAIAIDMPM--TVHAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDF 73 (512)
Q Consensus 7 a~~L~~~-i~~gd~V~i~~~n--~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~iv~~~~ 73 (512)
++.+... +.++|++...++- +...+...++++..|+..++++. .+.+.+...+++.++++++....
T Consensus 123 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~-~~~~~~~~~i~~~~~t~l~~~Ps 191 (437)
T 2y27_A 123 ARSIRAAGARRGDKVHVSYGYGLFTGGLGAHYGAERAGLTVIPFGG-GQTEKQVQLIQDFRPDIIMVTPS 191 (437)
T ss_dssp HHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHTTCEEECCCS-CCHHHHHHHHHHHCCSEEEECHH
T ss_pred HHHHHHcCCCCCCEEEEcccccccccchHHHHHHHHcCCEEEeCCC-CCHHHHHHHHHHhCCCEEEECHH
Confidence 3344456 8999999999885 34445567888999999887755 47889999999999999988764
No 51
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}
Probab=68.34 E-value=16 Score=36.77 Aligned_cols=95 Identities=11% Similarity=-0.009 Sum_probs=69.6
Q ss_pred CCCCeEEEEecCCCCCCCceEEecCchhHHHHHHhh---ccccccCCcEEEecCCccchhhhHHHHhhhccCceEEEecC
Q 010344 138 PVDSVINILFSSGTTGEPKAIPWTQLSPIRCAAEAW---GHIDMKVGDVYCWPTNLGWVMGPIILFSSFLSGAALALYHG 214 (512)
Q Consensus 138 ~~~~~~~i~~TSGtTG~pK~v~~s~~~~~~~~~~~~---~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~G~~~~~~~~ 214 (512)
.++.+|++..... | ....+|.+.+......+. ...++.+||++...++-+.. .+..+++++..|+..+.+..
T Consensus 69 ~pd~~Al~~~~~~--g--~~~~~Ty~eL~~~~~~~A~~L~~~Gv~~Gd~V~l~~~~~~e-~~~~~lA~~~~Gav~vpl~~ 143 (580)
T 3etc_A 69 SPEKLAMIWCDDY--G--NEKIFTFKDLKYYSDKAANFFVKHGIGKGDYVMLTLKSRYD-FWYCMLGLHKLGAIAVPATH 143 (580)
T ss_dssp CTTCEEEEEEESS--S--CEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECTTCTH-HHHHHHHHHHHTCEEEECCT
T ss_pred CCCCEEEEEEcCC--C--CEeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHH-HHHHHHHHHhCCEEEEeCCc
Confidence 4677887765321 2 245678887765554443 34588999999888776533 23347899999999999888
Q ss_pred CCchhhHHHHHHhcCceEEecch
Q 010344 215 SPLERSFGKFVQDSGVSVLGTVP 237 (512)
Q Consensus 215 ~~~~~~~~~~l~~~~~t~l~~~P 237 (512)
...++++...+++.++..+++.+
T Consensus 144 ~~~~~~l~~~l~~~~~~~ii~~~ 166 (580)
T 3etc_A 144 MLKTRDIVYRIEKAGLKMIVCIA 166 (580)
T ss_dssp TCCHHHHHHHHHHHTCCEEEEES
T ss_pred cCCHHHHHHHHHhcCCCEEEEec
Confidence 88889999999999999998754
No 52
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1
Probab=67.93 E-value=19 Score=36.13 Aligned_cols=83 Identities=13% Similarity=-0.074 Sum_probs=63.4
Q ss_pred EecCchhHHHHHHhh---ccccccCCcEEEecCCccchhhhHHHHhhhccCceEEEecCCCchhhHHHHHHhcCceEEec
Q 010344 159 PWTQLSPIRCAAEAW---GHIDMKVGDVYCWPTNLGWVMGPIILFSSFLSGAALALYHGSPLERSFGKFVQDSGVSVLGT 235 (512)
Q Consensus 159 ~~s~~~~~~~~~~~~---~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~l~~~~~t~l~~ 235 (512)
.+|.+.+...+.... ...++.++|++...++-+.. ....+++++..|+..+.++.....+++...+++.++..++.
T Consensus 64 ~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e-~~~~~lA~~~~Gav~vpl~~~~~~~~l~~il~~~~~~~li~ 142 (563)
T 1amu_A 64 QLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSID-LFIGILAVLKAGGAYVPIDIEYPKERIQYILDDSQARMLLT 142 (563)
T ss_dssp EEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHH-HHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEE
T ss_pred eecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHH-HHHHHHHHHHhCCEEEEeCCCCcHHHHHHHHHhcCCCEEEE
Confidence 578887765554443 34588999999887775532 23447899999999999988888899999999999999998
Q ss_pred chHHHHH
Q 010344 236 VPSLVKA 242 (512)
Q Consensus 236 ~P~~~~~ 242 (512)
.+.....
T Consensus 143 ~~~~~~~ 149 (563)
T 1amu_A 143 QKHLVHL 149 (563)
T ss_dssp CGGGHHH
T ss_pred cCchhhh
Confidence 8765443
No 53
>3vc3_A Beta-cyanoalnine synthase; beta-cyanoalanine synthase, transferase; HET: C6P; 1.77A {Glycine max} PDB: 3vbe_A*
Probab=67.44 E-value=16 Score=33.87 Aligned_cols=70 Identities=19% Similarity=0.282 Sum_probs=55.2
Q ss_pred HHHHHHHHhcc-CCCCCEEEEEcCCCHHHHHHHHHHHHhcceEeecCCCcCHHHHHHHHHhcCccEEEecc
Q 010344 3 YRLVANALDTM-FSKGDAIAIDMPMTVHAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQD 72 (512)
Q Consensus 3 ~~~~a~~L~~~-i~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~iv~~~ 72 (512)
...+..+..+. +++|.+..+....+-.-..+.++|.+.|.-+..+=|...+.+-...++..++++++++.
T Consensus 71 ~~~i~~a~~~g~l~~g~~~Vv~aSsGN~g~alA~~aa~~G~~~~IvmP~~~~~~k~~~~~~~GA~Vv~v~~ 141 (344)
T 3vc3_A 71 YAMITDAEEKNLITPGKTTLIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGAELILTDP 141 (344)
T ss_dssp HHHHHHHHHTTCCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECG
T ss_pred HHHHHHHHHcCCCCCCCCEEEEeCCcHHHHHHHHHHHHcCCcEEEEECCCChHHHHHHHHHcCCEEEEECC
Confidence 34455555555 88888777788888888888899999999887776777677778889999999999875
No 54
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}
Probab=67.20 E-value=22 Score=34.15 Aligned_cols=66 Identities=15% Similarity=0.085 Sum_probs=51.7
Q ss_pred HHHHhcc-CCCCCEEEEEcCC--CHHHHHHHHHHHHhcceEeecCCCcCHHHHHHHHHhcCccEEEeccc
Q 010344 7 ANALDTM-FSKGDAIAIDMPM--TVHAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDF 73 (512)
Q Consensus 7 a~~L~~~-i~~gd~V~i~~~n--~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~iv~~~~ 73 (512)
++.+... +.++|++...++- +...+...++++..|+..++++. .+.+.+...+++.++++++....
T Consensus 125 ~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~-~~~~~~~~~i~~~~~t~l~~~Ps 193 (443)
T 2y4o_A 125 ARSIRAAGGRPGDTLHNAFGYGLFTGGLGIHYGAERLGCMVVPMSG-GQTEKQVQLIRDFEPKIILVTPS 193 (443)
T ss_dssp HHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHHTCEEECCCS-CCHHHHHHHHHHHCCSEEEECHH
T ss_pred HHHHHHcCCCCCCEEEEeccCcccccHHHHHHHHHHcCCEEEECCC-CCHHHHHHHHHHhCCcEEEECHH
Confidence 3344456 8999999999885 34445567888899999888765 47889999999999999988764
No 55
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}
Probab=67.10 E-value=17 Score=39.27 Aligned_cols=95 Identities=13% Similarity=-0.054 Sum_probs=69.9
Q ss_pred CCCCeEEEEecCCCCCCCceEEecCchhHHHHHHhh---ccccccCCcEEEecCCccchhhhHHHHhhhccCceEEEecC
Q 010344 138 PVDSVINILFSSGTTGEPKAIPWTQLSPIRCAAEAW---GHIDMKVGDVYCWPTNLGWVMGPIILFSSFLSGAALALYHG 214 (512)
Q Consensus 138 ~~~~~~~i~~TSGtTG~pK~v~~s~~~~~~~~~~~~---~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~G~~~~~~~~ 214 (512)
.++.++++.. .+| -.+|.+.+......+. ...++.++|++...++-+.. ....+++++..|+..+.++.
T Consensus 74 ~pd~~Al~~~---~~~----~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~ns~e-~~v~~lA~~~~Ga~~vpl~~ 145 (979)
T 3tsy_A 74 FATKPCLING---PTG----HVYTYSDVHVISRQIAANFHKLGVNQNDVVMLLLPNCPE-FVLSFLAASFRGATATAANP 145 (979)
T ss_dssp TTTSEEEEET---TTC----CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECSSCHH-HHHHHHHHHHHTCEEEEECT
T ss_pred CCCCeEEEEC---CCC----cEEEHHHHHHHHHHHHHHHHHcCCCCcCEEEEEeCCCHH-HHHHHHHHHHcCCEEEeeCC
Confidence 4677777642 222 3578877765554443 34588999999888776532 33448899999999999988
Q ss_pred CCchhhHHHHHHhcCceEEecchHHH
Q 010344 215 SPLERSFGKFVQDSGVSVLGTVPSLV 240 (512)
Q Consensus 215 ~~~~~~~~~~l~~~~~t~l~~~P~~~ 240 (512)
...++++...+++.++.+++..+...
T Consensus 146 ~~~~~~l~~~l~~~~~~~vi~~~~~~ 171 (979)
T 3tsy_A 146 FFTPAEIAKQAKASNTKLIITEARYV 171 (979)
T ss_dssp TSCHHHHHHHHHHHTEEEEEECSTTT
T ss_pred CCCHHHHHHHHHHcCCeEEEEChHHH
Confidence 88889999999999999999876543
No 56
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Probab=66.19 E-value=11 Score=37.71 Aligned_cols=83 Identities=7% Similarity=-0.093 Sum_probs=63.4
Q ss_pred EecCchhHHHHHHhhc---cccccCCcEEEecCCccchhhhHHHHhhhccCceEEEecCCCchhhHHHHHHhcCceEEec
Q 010344 159 PWTQLSPIRCAAEAWG---HIDMKVGDVYCWPTNLGWVMGPIILFSSFLSGAALALYHGSPLERSFGKFVQDSGVSVLGT 235 (512)
Q Consensus 159 ~~s~~~~~~~~~~~~~---~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~l~~~~~t~l~~ 235 (512)
.+|.+.+...+..+.. ..++.++|++...++-+.. ....+++++..|+..+.++.....+++...+++.++.+++.
T Consensus 52 ~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e-~~~~~la~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~ 130 (548)
T 2d1s_A 52 DYSYAEYLEKSCCLGKALQNYGLVVDGRIALCSENCEE-FFIPVIAGLFIGVGVAPTNEIYTLRELVHSLGISKPTIVFS 130 (548)
T ss_dssp EEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCTT-THHHHHHHHHHTCEEEEECTTSCHHHHHHHHHHHCCSEEEE
T ss_pred EeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchh-HHHHHHHHHhhCCEEeccCCCCCHHHHHHHHHhcCCeEEEE
Confidence 5788877665554443 4588999999888775533 23447889999999999988888899999999999999988
Q ss_pred chHHHHH
Q 010344 236 VPSLVKA 242 (512)
Q Consensus 236 ~P~~~~~ 242 (512)
.+.....
T Consensus 131 ~~~~~~~ 137 (548)
T 2d1s_A 131 SKKGLDK 137 (548)
T ss_dssp CTTTHHH
T ss_pred cHHHHHH
Confidence 7765443
No 57
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*
Probab=65.70 E-value=23 Score=33.96 Aligned_cols=67 Identities=13% Similarity=0.022 Sum_probs=52.6
Q ss_pred HHHHHhcc-CCCCCEEEEEcCC--CHHHHHHHHHHHHhcceEeecCCCcCHHHHHHHHHhcCccEEEeccc
Q 010344 6 VANALDTM-FSKGDAIAIDMPM--TVHAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDF 73 (512)
Q Consensus 6 ~a~~L~~~-i~~gd~V~i~~~n--~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~iv~~~~ 73 (512)
+++.+... +.++|++...++- ....+..+++++..|+..++.++ ...+.+...+++.++++++....
T Consensus 118 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~~-~~~~~~~~~i~~~~~t~~~~~P~ 187 (436)
T 3qov_A 118 VARCLYMVGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTVPAAA-GNSKRQIKFISDFKTTALHAIPS 187 (436)
T ss_dssp HHHHHHHTTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEECCCS-CCHHHHHHHHHHHTCCEEECCHH
T ss_pred HHHHHHHcCCCCCCEEEECcccccchhHHHHHHHHHHcCCEEEeCCC-CCHHHHHHHHHHHCCCEEEECHH
Confidence 44455566 9999999999874 34555567888999999888754 47788999999999999888764
No 58
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Probab=64.44 E-value=19 Score=36.93 Aligned_cols=97 Identities=13% Similarity=0.063 Sum_probs=69.9
Q ss_pred CCCCeEEEEecCCCCCCCceEEecCchhHHHHHHh---hc-cccccCCcEEEecCCccchhhhHHHHhhhccCceEEEec
Q 010344 138 PVDSVINILFSSGTTGEPKAIPWTQLSPIRCAAEA---WG-HIDMKVGDVYCWPTNLGWVMGPIILFSSFLSGAALALYH 213 (512)
Q Consensus 138 ~~~~~~~i~~TSGtTG~pK~v~~s~~~~~~~~~~~---~~-~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~G~~~~~~~ 213 (512)
.++.+|++... ..+|. ...+|.+.+...+..+ .. ..++.++|++...+|...- ....+++++..|+..+.+.
T Consensus 95 ~pd~~Al~~~~-~~~~~--~~~~TY~eL~~~v~~lA~~L~~~~Gv~~Gd~V~i~~~~~~e-~v~a~lA~~~~Gav~vpl~ 170 (663)
T 1ry2_A 95 TPNKKAIIFEG-DEPGQ--GYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPE-AIITLLAISRIGAIHSVVF 170 (663)
T ss_dssp CTTSEEEEEEC-SSTTC--CEEEEHHHHHHHHHHHHHHHHHTSCCCTTCEEEECCCSSHH-HHHHHHHHHHTTCEEEECC
T ss_pred CCCceEEEEEc-CCCCc--eEEEEHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHH-HHHHHHHHHHcCCEEEeeC
Confidence 45667776542 22222 3457888776554433 33 5678999999988876543 2344889999999999998
Q ss_pred CCCchhhHHHHHHhcCceEEecchH
Q 010344 214 GSPLERSFGKFVQDSGVSVLGTVPS 238 (512)
Q Consensus 214 ~~~~~~~~~~~l~~~~~t~l~~~P~ 238 (512)
....++.+...+++.++.+++....
T Consensus 171 ~~~~~~~l~~~l~~~~~~~li~~~~ 195 (663)
T 1ry2_A 171 AGFSSNSLRDRINDGDSKVVITTDE 195 (663)
T ss_dssp TTSCHHHHHHHHHHHTCSEEEEESB
T ss_pred CCCCHHHHHHHHHhcCCeEEEEccc
Confidence 8888899999999999999987653
No 59
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Probab=64.20 E-value=25 Score=35.90 Aligned_cols=95 Identities=15% Similarity=0.062 Sum_probs=68.7
Q ss_pred CCCeEEEEecCCCCCCCceEEecCchhHHHHHHhhc---cccccCCcEEEecCCccchhhhHHHHhhhccCceEEEecCC
Q 010344 139 VDSVINILFSSGTTGEPKAIPWTQLSPIRCAAEAWG---HIDMKVGDVYCWPTNLGWVMGPIILFSSFLSGAALALYHGS 215 (512)
Q Consensus 139 ~~~~~~i~~TSGtTG~pK~v~~s~~~~~~~~~~~~~---~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~ 215 (512)
++.+|++... ..+| ..-.+|.+.+...+..+.. ..++.++|++...+|-+.- ....+++++..|+..+.+...
T Consensus 90 pd~~Al~~~~-~~~~--~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e-~vva~lA~~~~Gav~vpl~~~ 165 (652)
T 1pg4_A 90 GDRTAIIWEG-DDTS--QSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPE-AAVAMLACARIGAVHSVIFGG 165 (652)
T ss_dssp TTSEEEEEEC-SSTT--CEEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSSHH-HHHHHHHHHHHTCEEEECCTT
T ss_pred CCceEEEEEc-CCCC--ceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHH-HHHHHHHHHHcCcEEEecCCC
Confidence 5667776432 2222 2346788887665554443 4588999999888876543 234478999999999999888
Q ss_pred CchhhHHHHHHhcCceEEecch
Q 010344 216 PLERSFGKFVQDSGVSVLGTVP 237 (512)
Q Consensus 216 ~~~~~~~~~l~~~~~t~l~~~P 237 (512)
..++++...+++.++.+++...
T Consensus 166 ~~~~~l~~~l~~~~~~~li~~~ 187 (652)
T 1pg4_A 166 FSPEAVAGCIIDSSSRLVITAD 187 (652)
T ss_dssp SCHHHHHHHHHHHTCSEEEEES
T ss_pred CCHHHHHHHHHhcCCCEEEEcC
Confidence 8889999999999999888754
No 60
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*
Probab=62.59 E-value=40 Score=33.76 Aligned_cols=101 Identities=11% Similarity=-0.004 Sum_probs=71.4
Q ss_pred CCCCeEEEEecCCCCCCCceEEecCchhHHHHHHhhc---cccccCCcEEEecCCccchhhhHHHHhhhccCceEEEecC
Q 010344 138 PVDSVINILFSSGTTGEPKAIPWTQLSPIRCAAEAWG---HIDMKVGDVYCWPTNLGWVMGPIILFSSFLSGAALALYHG 214 (512)
Q Consensus 138 ~~~~~~~i~~TSGtTG~pK~v~~s~~~~~~~~~~~~~---~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~G~~~~~~~~ 214 (512)
.++.++++....+ ..-.+|.+.+...+..+.. ..++.++|++...++-+.. ....+++++..|+..+.+..
T Consensus 24 ~p~~~a~~~~~~~-----~~~~~Ty~eL~~~~~~lA~~L~~~gv~~gd~V~i~~~~~~~-~~~~~lA~~~~G~~~vpl~~ 97 (590)
T 3kxw_A 24 SPNKKSCTFLNKE-----LEETMTYEQLDQHAKAIAATLQAEGAKPGDRVLLLFAPGLP-LIQAFLGCLYAGCIAVPIYP 97 (590)
T ss_dssp CTTSEEEEEEETT-----EEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHH-HHHHHHHHHHTTCEEEEECC
T ss_pred CCCCeEEEEEcCC-----eeEEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchh-HHHHHHHHHHhCcEEEEecC
Confidence 4566777655421 2346788887665554443 4588899999888776533 33447899999999998876
Q ss_pred CC---chhhHHHHHHhcCceEEecchHHHHHHH
Q 010344 215 SP---LERSFGKFVQDSGVSVLGTVPSLVKAWK 244 (512)
Q Consensus 215 ~~---~~~~~~~~l~~~~~t~l~~~P~~~~~l~ 244 (512)
.. ..+++...++..++..++..+.....+.
T Consensus 98 ~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~ 130 (590)
T 3kxw_A 98 PAQEKLLDKAQRIVTNSKPVIVLMIADHIKKFT 130 (590)
T ss_dssp CCSHHHHHHHHHHHHHHCCSEEEECHHHHHHHC
T ss_pred CCchHHHHHHHHHHHhCCCCEEEeCHHHHHHHH
Confidence 44 3467788899999999999888776653
No 61
>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A
Probab=61.70 E-value=25 Score=35.20 Aligned_cols=92 Identities=15% Similarity=0.085 Sum_probs=67.5
Q ss_pred CCCCeEEEEecCCCCCCCceEEecCchhHHHHHHhh---ccccccCCcEEEecCCccchhhhHHHHhhhccCceEEEecC
Q 010344 138 PVDSVINILFSSGTTGEPKAIPWTQLSPIRCAAEAW---GHIDMKVGDVYCWPTNLGWVMGPIILFSSFLSGAALALYHG 214 (512)
Q Consensus 138 ~~~~~~~i~~TSGtTG~pK~v~~s~~~~~~~~~~~~---~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~G~~~~~~~~ 214 (512)
.++.+|++. . .-.+|.+.+...+.... ...++.++|++...++-+.. ....+++++..|+..+.++.
T Consensus 88 ~pd~~A~~~-~--------~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~-~~~~~lA~~~~G~~~vpl~~ 157 (570)
T 4gr5_A 88 APDAVALLH-E--------ADELTYGALNERANRLAHRLVGLGVAPGTLVGVHLERGFD-MVVALLAVLKAGGGYTMLDP 157 (570)
T ss_dssp CTTSEEEEE-T--------TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHH-HHHHHHHHHHTTCEEEECCT
T ss_pred CCCCeEEEC-C--------CCcEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHH-HHHHHHHHHHHCCEEEEcCC
Confidence 456677654 1 12478887766554444 34588999999887765533 23447899999999999988
Q ss_pred CCchhhHHHHHHhcCceEEecchHH
Q 010344 215 SPLERSFGKFVQDSGVSVLGTVPSL 239 (512)
Q Consensus 215 ~~~~~~~~~~l~~~~~t~l~~~P~~ 239 (512)
....+++...+++.++..++.....
T Consensus 158 ~~~~~~l~~~l~~~~~~~~i~~~~~ 182 (570)
T 4gr5_A 158 QFPVERLALSLEDTGAPLLVTSRPL 182 (570)
T ss_dssp TSCHHHHHHHHHHHTCSEEEECTTT
T ss_pred CChHHHHHHHHHhcCCCEEEecchh
Confidence 8888999999999999999887654
No 62
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*
Probab=61.24 E-value=16 Score=36.01 Aligned_cols=80 Identities=13% Similarity=0.114 Sum_probs=61.6
Q ss_pred EecCchhHHHHHHhhc---cccccCCcEEEecCCccchhhhHHHHhhhccCceEEEecCCCchhhHHHHHHhcCceEEec
Q 010344 159 PWTQLSPIRCAAEAWG---HIDMKVGDVYCWPTNLGWVMGPIILFSSFLSGAALALYHGSPLERSFGKFVQDSGVSVLGT 235 (512)
Q Consensus 159 ~~s~~~~~~~~~~~~~---~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~l~~~~~t~l~~ 235 (512)
.+|.+.+...+..... ..++.++|++...++-+.. ....+++++..|+..+.++.....+++...+++.++..++.
T Consensus 28 ~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~-~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~il~~~~~~~vi~ 106 (503)
T 4fuq_A 28 KISYAELVARAGRVANVLVARGLQVGDRVAAQTEKSVE-ALVLYLATVRAGGVYLPLNTAYTLHELDYFITDAEPKIVVC 106 (503)
T ss_dssp EEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHH-HHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHHCCSEEEE
T ss_pred EEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHH-HHHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCCcEEEE
Confidence 4788877665544443 4588999999887776532 23448899999999999988888899999999999999998
Q ss_pred chHH
Q 010344 236 VPSL 239 (512)
Q Consensus 236 ~P~~ 239 (512)
.+..
T Consensus 107 ~~~~ 110 (503)
T 4fuq_A 107 DPSK 110 (503)
T ss_dssp CGGG
T ss_pred Cchh
Confidence 7643
No 63
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}
Probab=60.55 E-value=19 Score=35.59 Aligned_cols=82 Identities=9% Similarity=-0.035 Sum_probs=62.4
Q ss_pred EecCchhHHHHHHhh---ccccccCCcEEEecCCccchhhhHHHHhhhccCceEEEecCCCchhhHHHHHHhcCceEEec
Q 010344 159 PWTQLSPIRCAAEAW---GHIDMKVGDVYCWPTNLGWVMGPIILFSSFLSGAALALYHGSPLERSFGKFVQDSGVSVLGT 235 (512)
Q Consensus 159 ~~s~~~~~~~~~~~~---~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~l~~~~~t~l~~ 235 (512)
.+|...+...+.... ...++.++|++...++-+.. ....+++++..|+..+.++....++++...+++.++..++.
T Consensus 48 ~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~-~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~ 126 (529)
T 2v7b_A 48 STTYGELEERARRFASALRTLGVHPEERILLVMLDTVA-LPVAFLGALYAGVVPVVANTLLTPADYVYMLTHSHARAVIA 126 (529)
T ss_dssp EEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSTH-HHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEEE
T ss_pred CccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHH-HHHHHHHHHHcCceEEecCcccCHHHHHHHHhccCCeEEEe
Confidence 478887766554443 34578999999888776543 23447889999999999887778889999999999999988
Q ss_pred chHHHH
Q 010344 236 VPSLVK 241 (512)
Q Consensus 236 ~P~~~~ 241 (512)
.+....
T Consensus 127 ~~~~~~ 132 (529)
T 2v7b_A 127 SGALVQ 132 (529)
T ss_dssp EGGGHH
T ss_pred chhhhh
Confidence 776544
No 64
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=60.20 E-value=57 Score=27.73 Aligned_cols=90 Identities=8% Similarity=-0.150 Sum_probs=53.8
Q ss_pred cEEEecCCc--cchhhhHH-HHhhhccCceEEEecCCCchhhHHHHHHhcCceEEec--c----hHH--HHHHHccCCCC
Q 010344 182 DVYCWPTNL--GWVMGPII-LFSSFLSGAALALYHGSPLERSFGKFVQDSGVSVLGT--V----PSL--VKAWKNTNCLQ 250 (512)
Q Consensus 182 ~~~~~~~p~--~~~~~~~~-~~~~l~~G~~~~~~~~~~~~~~~~~~l~~~~~t~l~~--~----P~~--~~~l~~~~~~~ 250 (512)
.+++...+. .|..|... ....-..|-.++....+..++++.+.+.+++++.+.+ + +.. +..+++.....
T Consensus 93 ~~vll~~v~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e~iv~~~~~~~~d~v~l~~S~l~~~~~~~~~~~i~~l~~~ 172 (215)
T 3ezx_A 93 GLAITFVAEGDIHDIGHRLVTTMLGANGFQIVDLGVDVLNENVVEEAAKHKGEKVLLVGSALMTTSMLGQKDLMDRLNEE 172 (215)
T ss_dssp CEEEEEECTTCCCCHHHHHHHHHHHHTSCEEEECCSSCCHHHHHHHHHHTTTSCEEEEEECSSHHHHTHHHHHHHHHHHT
T ss_pred CeEEEEeCCCChhHHHHHHHHHHHHHCCCeEEEcCCCCCHHHHHHHHHHcCCCEEEEEchhcccCcHHHHHHHHHHHHHc
Confidence 344444443 38888755 3333456778888777778899999999999997666 2 222 22232222111
Q ss_pred CCCcCceeEEEeecCCCCchhhH
Q 010344 251 GLDWTKIRSFASTGETSNVDDDL 273 (512)
Q Consensus 251 ~~~l~~l~~i~~~G~~l~~~~~~ 273 (512)
... ..++ +++||.+++++..+
T Consensus 173 ~~~-~~v~-v~vGG~~~~~~~a~ 193 (215)
T 3ezx_A 173 KLR-DSVK-CMFGGAPVSDKWIE 193 (215)
T ss_dssp TCG-GGSE-EEEESSSCCHHHHH
T ss_pred CCC-CCCE-EEEECCCCCHHHHH
Confidence 110 1333 68899998866444
No 65
>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*
Probab=60.14 E-value=25 Score=34.96 Aligned_cols=90 Identities=13% Similarity=0.012 Sum_probs=65.8
Q ss_pred CCCCeEEEEecCCCCCCCceEEecCchhHHHHHHhh---ccccccCCcEEEecCCccchhhhHHHHhhhccCceEEEecC
Q 010344 138 PVDSVINILFSSGTTGEPKAIPWTQLSPIRCAAEAW---GHIDMKVGDVYCWPTNLGWVMGPIILFSSFLSGAALALYHG 214 (512)
Q Consensus 138 ~~~~~~~i~~TSGtTG~pK~v~~s~~~~~~~~~~~~---~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~G~~~~~~~~ 214 (512)
.++.+|++. + .-.+|.+.+...+..+. ...++.++|++...++-+.. ....+++++..|+..+.+..
T Consensus 43 ~p~~~Al~~---~------~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~-~~~~~lA~~~~Gav~vpl~~ 112 (544)
T 3o83_A 43 HPHSLAIIC---G------ERQLSYIELDRLSTNLATRLAEKGLGKGDTALVQLPNVAE-FYIVFFALLKAGVVVLNALY 112 (544)
T ss_dssp CTTSEEEEE---T------TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCSSHH-HHHHHHHHHHHTCEEEECCT
T ss_pred CCCceEEEc---C------CCceeHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHH-HHHHHHHHHHhCcEEecCCC
Confidence 456677763 1 23578887766554444 34588999999887765432 23447889999999988887
Q ss_pred CCchhhHHHHHHhcCceEEecch
Q 010344 215 SPLERSFGKFVQDSGVSVLGTVP 237 (512)
Q Consensus 215 ~~~~~~~~~~l~~~~~t~l~~~P 237 (512)
....+++...+++.++..++..+
T Consensus 113 ~~~~~~l~~~l~~~~~~~li~~~ 135 (544)
T 3o83_A 113 SHRQYELNAFIKQIQPKLLIGSR 135 (544)
T ss_dssp TCCHHHHHHHHHHHCCSEEEEET
T ss_pred CCCHHHHHHHHHhcCeeEEEEcc
Confidence 77788999999999999998765
No 66
>3tbh_A O-acetyl serine sulfhydrylase; cysteine synthase, type II PLP dependent enzyme, serine ACET transferase; HET: LLP; 1.68A {Leishmania donovani} PDB: 3spx_A* 3t4p_A* 4air_A*
Probab=59.42 E-value=28 Score=32.06 Aligned_cols=67 Identities=19% Similarity=0.147 Sum_probs=48.4
Q ss_pred HHHHHhcc-CCCCCEEEEEcCCCHHHHHHHHHHHHhcceEeecCCCcCHHHHHHHHHhcCccEEEecc
Q 010344 6 VANALDTM-FSKGDAIAIDMPMTVHAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQD 72 (512)
Q Consensus 6 ~a~~L~~~-i~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~iv~~~ 72 (512)
+..+..+- +++|+.|.+....+-.-..+.+++...|.-++.+-|...+..-...++..++++++++.
T Consensus 59 i~~a~~~g~l~~g~~vvv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~ 126 (334)
T 3tbh_A 59 YDKAEKEGKLIPGKSIVVESSSGNTGVSLAHLGAIRGYKVIITMPESMSLERRCLLRIFGAEVILTPA 126 (334)
T ss_dssp HHHHHHTTSCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECG
T ss_pred HHHHHHcCCCCCCCeEEEEeCCCHHHHHHHHHHHHhCCCEEEEECCCCCHHHHHHHHHCCCEEEEECC
Confidence 33334444 78888865555667777778888888898876665655555667788999999999975
No 67
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A
Probab=57.08 E-value=24 Score=34.85 Aligned_cols=95 Identities=11% Similarity=-0.049 Sum_probs=68.7
Q ss_pred CCCCeEEEEecCCCCCCCceEEecCchhHHHHHHhhc---cccccCCcEEEecCCccchhhhHHHHhhhccCceEEEecC
Q 010344 138 PVDSVINILFSSGTTGEPKAIPWTQLSPIRCAAEAWG---HIDMKVGDVYCWPTNLGWVMGPIILFSSFLSGAALALYHG 214 (512)
Q Consensus 138 ~~~~~~~i~~TSGtTG~pK~v~~s~~~~~~~~~~~~~---~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~G~~~~~~~~ 214 (512)
.++.++++.. | ....+|.+.+...+..+.. ..++.++|++...++-+.. ....+++++..|+..+.++.
T Consensus 29 ~p~~~A~~~~--~-----~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~-~~~~~lA~~~~G~~~vpl~~ 100 (517)
T 3r44_A 29 SPRLQAYVEP--S-----TDVRMTYAQMNALANRCADVLTALGIAKGDRVALLMPNSVE-FCCLFYGAAKLGAVAVPINT 100 (517)
T ss_dssp STTSEEEEEG--G-----GTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHH-HHHHHHHHHHHTCEEEECCT
T ss_pred CCCCeEEEeC--C-----cCceeeHHHHHHHHHHHHHHHHHcCCCCcCEEEEEcCCCHH-HHHHHHHHHHhCcEEEecCc
Confidence 3556676643 1 1245788877665544443 4588999999888775432 23447899999999999988
Q ss_pred CCchhhHHHHHHhcCceEEecchHHH
Q 010344 215 SPLERSFGKFVQDSGVSVLGTVPSLV 240 (512)
Q Consensus 215 ~~~~~~~~~~l~~~~~t~l~~~P~~~ 240 (512)
....+++...+++.++.+++..+...
T Consensus 101 ~~~~~~l~~~l~~~~~~~vi~~~~~~ 126 (517)
T 3r44_A 101 RLAAPEVSFILSDSGSKVVIYGAPSA 126 (517)
T ss_dssp TSCHHHHHHHHHHHTCSEEEECGGGH
T ss_pred ccCHHHHHHHHHhcCceEEEECCchH
Confidence 88889999999999999998766543
No 68
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*
Probab=54.81 E-value=33 Score=33.75 Aligned_cols=77 Identities=10% Similarity=-0.114 Sum_probs=58.3
Q ss_pred EecCchhHHHHHHhhc---cccccCCcEEEecCCccchhhhHHHHhhhccCceEEEecCCCchhhHHHHHHhcCceEEec
Q 010344 159 PWTQLSPIRCAAEAWG---HIDMKVGDVYCWPTNLGWVMGPIILFSSFLSGAALALYHGSPLERSFGKFVQDSGVSVLGT 235 (512)
Q Consensus 159 ~~s~~~~~~~~~~~~~---~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~l~~~~~t~l~~ 235 (512)
.+|.+.+...+..... ..+..++|++...++-+.. ....+++++..|+..+.++.....+++...+++.++..++.
T Consensus 26 ~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~e-~~~~~la~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~~i~ 104 (512)
T 3fce_A 26 KITYKQLKEDSDALAHWISSEYPDDRSPIMVYGHMQPE-MIINFLGCVKAGHAYIPVDLSIPADRVQRIAENSGAKLLLS 104 (512)
T ss_dssp EEEHHHHHHHHHHHHHHHHHHSTTCCCCEEEEESSCHH-HHHHHHHHHHTTCCEEEEETTSCHHHHHHHHHHSCCCEEEE
T ss_pred eEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCCHH-HHHHHHHHHHhCCEEEeeCCCCcHHHHHHHHHhcCCCEEEe
Confidence 4788877665554443 3478899998877665432 23448899999999999988888899999999999998876
Q ss_pred c
Q 010344 236 V 236 (512)
Q Consensus 236 ~ 236 (512)
.
T Consensus 105 ~ 105 (512)
T 3fce_A 105 A 105 (512)
T ss_dssp S
T ss_pred c
Confidence 4
No 69
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=52.76 E-value=23 Score=34.72 Aligned_cols=78 Identities=8% Similarity=-0.005 Sum_probs=60.4
Q ss_pred EecCchhHHHHHHhhccccccCCcEEEecCCccchhhhHHHHhhhccCceEEEecCCCchhhHHHHHHhcCceEEecch
Q 010344 159 PWTQLSPIRCAAEAWGHIDMKVGDVYCWPTNLGWVMGPIILFSSFLSGAALALYHGSPLERSFGKFVQDSGVSVLGTVP 237 (512)
Q Consensus 159 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~l~~~~~t~l~~~P 237 (512)
.+|.+.+...+......+.-.++|++...++-+.. ....+++++..|+..+.++....++++...+++.++..++...
T Consensus 26 ~~Ty~eL~~~~~~lA~~L~~~~gd~V~i~~~n~~e-~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~ 103 (501)
T 3ipl_A 26 SYTYQNLYCEASLLAKRLKAYQQSRVGLYIDNSIQ-SIILIHACWLANIEIAMINTRLTPNEMTNQMRSIDVQLIFCTL 103 (501)
T ss_dssp EEEHHHHHHHHHHHHHHHHTTCCSEEEEECCSSHH-HHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHTTCCEEEESS
T ss_pred EEEHHHHHHHHHHHHHHHHHcCCCEEEEEcCCCHH-HHHHHHHHHHcCCEEEecCccCCHHHHHHHHHhcCCCEEEEcc
Confidence 57888887776666655433489998887775432 3345889999999999998888889999999999999988754
No 70
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme family,, structural genomics, PSI-2, protein structure initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB: 3pbk_A*
Probab=46.69 E-value=41 Score=33.53 Aligned_cols=85 Identities=8% Similarity=-0.080 Sum_probs=62.2
Q ss_pred EEecCchhHHHHHHhhc---cccccCCcEEEecCCccchhhhHHHHhhhccCceEEEecCCCc-------hhhHHHHHHh
Q 010344 158 IPWTQLSPIRCAAEAWG---HIDMKVGDVYCWPTNLGWVMGPIILFSSFLSGAALALYHGSPL-------ERSFGKFVQD 227 (512)
Q Consensus 158 v~~s~~~~~~~~~~~~~---~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~-------~~~~~~~l~~ 227 (512)
-.+|.+.+...+..... ..++.++|++...++-+.. ....+++++..|+..+.++.... .+++...+++
T Consensus 48 ~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~-~~~~~lA~~~~G~~~vpl~~~~~~~~~~~~~~~l~~~l~~ 126 (576)
T 3gqw_A 48 DQLEYQTLKARAEAGAKRLLSLNLKKGDRVALIAETSSE-FVEAFFACQYAGLVAVPLAIPMGVGQRDSWSAKLQGLLAS 126 (576)
T ss_dssp EEEEHHHHHHHHHHHHHHHHHTCCCTTCEEEEECCSSHH-HHHHHHHHHHTTCEEEEECCCSSSSSHHHHHHHHHHHHHH
T ss_pred eEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHH-HHHHHHHHHHhCCeEeecCCCCcccchhhHHHHHHHHHHh
Confidence 46788887665554443 4578999999888776542 23447899999999998875554 5678889999
Q ss_pred cCceEEecchHHHHHH
Q 010344 228 SGVSVLGTVPSLVKAW 243 (512)
Q Consensus 228 ~~~t~l~~~P~~~~~l 243 (512)
.++..++........+
T Consensus 127 ~~~~~ii~~~~~~~~~ 142 (576)
T 3gqw_A 127 CQPAAIITGDEWLPLV 142 (576)
T ss_dssp HCCSEEEECGGGHHHH
T ss_pred cCCCEEEecHHHHHHH
Confidence 9999999877655443
No 71
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}
Probab=45.85 E-value=79 Score=31.38 Aligned_cols=97 Identities=13% Similarity=0.090 Sum_probs=65.3
Q ss_pred CCCCeEEEEecCCCCCCCc--eEEecCchhHHHHHHhhc---cccccCCcEEEecCCccchhhhHHHHhhhccCceEEEe
Q 010344 138 PVDSVINILFSSGTTGEPK--AIPWTQLSPIRCAAEAWG---HIDMKVGDVYCWPTNLGWVMGPIILFSSFLSGAALALY 212 (512)
Q Consensus 138 ~~~~~~~i~~TSGtTG~pK--~v~~s~~~~~~~~~~~~~---~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~G~~~~~~ 212 (512)
.++.+|++... +..+..+ .-.+|.+.+...+..+.. ..+. ++|++...++-+.. ....+++++..|+..+.+
T Consensus 33 ~p~~~A~~~~~-~~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~~-~~~~~lA~~~~Gav~vpl 109 (562)
T 3ite_A 33 HPEWKAVEVAT-GFLGSQKIVTEDWTYKKLNETANQVANLIIHASL-HGRAIAVSLDRSLI-AFAIIVGIMKSGNTYVPI 109 (562)
T ss_dssp CTTSEEEEEEE-CC-----CEEEEEEHHHHHHHHHHHHHHHHHTTC-SSCEEEEECCSCHH-HHHHHHHHHHTTCEEEEC
T ss_pred CCCchhhhccc-ccccccccccCCCCHHHHHHHHHHHHHHHHhcCC-CCCEEEEEeCCCHH-HHHHHHHHHHhCCEEEec
Confidence 45667766543 2222222 246788877665544443 3456 79998887776533 234478999999999999
Q ss_pred cCCCchhhHHHHHHhcCceEEecch
Q 010344 213 HGSPLERSFGKFVQDSGVSVLGTVP 237 (512)
Q Consensus 213 ~~~~~~~~~~~~l~~~~~t~l~~~P 237 (512)
+.....+++...+++.++..++...
T Consensus 110 ~~~~~~~~l~~~l~~~~~~~~i~~~ 134 (562)
T 3ite_A 110 EAGLPNDRKSFLLRDSRAAMAFVCD 134 (562)
T ss_dssp CTTSCHHHHHHHHHHHTCSEEEECT
T ss_pred CCcCHHHHHHHHHHhcCCCEEEEcc
Confidence 8888889999999999999877653
No 72
>2cvi_A 75AA long hypothetical regulatory protein ASNC; structural genomics, unknown function; 1.50A {Pyrococcus horikoshii} PDB: 2z4p_A 2e1a_A
Probab=45.55 E-value=72 Score=21.96 Aligned_cols=46 Identities=15% Similarity=0.104 Sum_probs=31.5
Q ss_pred hHHHHHhhhcCCcceeeeeEEeeCCCCCCCceEEEEEEecCCCCCCcHHHHHHHHHHHH
Q 010344 408 SVEIERVCDGADESILETAAISVSPAGGGPEVLVICVVLKKGFTSQPVDKLKMIFSKAI 466 (512)
Q Consensus 408 ~~~iE~~l~~~~~~v~~~~v~~~~~~~~~~~~~~a~v~~~~~~~~~~~~~l~~~~~~~~ 466 (512)
..++++.|. +.|.|.+|..+..+ ....+.|.. .+.+++.+.+.+.+
T Consensus 15 ~~~~~~~l~-~~peV~e~~~vtG~------~D~ll~v~~------~d~~~l~~~i~~~l 60 (83)
T 2cvi_A 15 EREVMEKLL-AMPEVKEAYVVYGE------YDLIVKVET------DTLKDLDQFITEKI 60 (83)
T ss_dssp HHHHHHHHH-TSTTEEEEEECBSS------CSEEEEEEE------SSHHHHHHHHHTTG
T ss_pred HHHHHHHHh-CCCCeeEEEEEccc------CCEEEEEEE------CCHHHHHHHHHHHh
Confidence 368899998 89999999877543 345555555 45666766665444
No 73
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*
Probab=45.51 E-value=37 Score=33.39 Aligned_cols=78 Identities=8% Similarity=-0.124 Sum_probs=59.2
Q ss_pred EecCchhHHHHHHhh---ccccccCCcEEEecCCccchhhhHHHHhhhccCceEEEecCCCchhhHHHHHHhcCceEEec
Q 010344 159 PWTQLSPIRCAAEAW---GHIDMKVGDVYCWPTNLGWVMGPIILFSSFLSGAALALYHGSPLERSFGKFVQDSGVSVLGT 235 (512)
Q Consensus 159 ~~s~~~~~~~~~~~~---~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~l~~~~~t~l~~ 235 (512)
.+|.+.+...+.... ...++.++|++...++-+.. ....+++++..|+..+.++.....+++...+++.++..++.
T Consensus 29 ~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~~-~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~ii~ 107 (521)
T 3l8c_A 29 RRTYGQLKRDSDSIAAFIDSLALLAKSPVLVFGAQTYD-MLATFVALTKSGHAYIPVDVHSAPERILAIIEIAKPSLIIA 107 (521)
T ss_dssp EEEHHHHHHHHHHHHHHHHHTCCCTTCCEEEEECSSHH-HHHHHHHHHHTTCCEEEEETTSCHHHHHHHHHHSCCSEEEE
T ss_pred eecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHH-HHHHHHHHHHhCCEEEecCccccHHHHHHHHHhCCCCEEEe
Confidence 468887766554444 34578899998877765432 23447899999999999988888899999999999999886
Q ss_pred ch
Q 010344 236 VP 237 (512)
Q Consensus 236 ~P 237 (512)
..
T Consensus 108 ~~ 109 (521)
T 3l8c_A 108 IE 109 (521)
T ss_dssp SS
T ss_pred cC
Confidence 54
No 74
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A
Probab=44.23 E-value=42 Score=33.28 Aligned_cols=79 Identities=11% Similarity=-0.046 Sum_probs=59.8
Q ss_pred EEecCchhHHHHHHhhc---cccccCCcEEEecCCccchhhhHHHHhhhccCceEEEecCCCchhhHHHHHHhcCceEEe
Q 010344 158 IPWTQLSPIRCAAEAWG---HIDMKVGDVYCWPTNLGWVMGPIILFSSFLSGAALALYHGSPLERSFGKFVQDSGVSVLG 234 (512)
Q Consensus 158 v~~s~~~~~~~~~~~~~---~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~l~~~~~t~l~ 234 (512)
-.+|.+.+...+..... ..++.++|++...++-+.. ....+++++..|+..+.+......+++...+++.++..++
T Consensus 49 ~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~-~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi 127 (539)
T 1mdb_A 49 THWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKE-FFEVIFALFRLGALPVFALPSHRSSEITYFCEFAEAAAYI 127 (539)
T ss_dssp EEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEECCCSSHH-HHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHTTCSEEE
T ss_pred CcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHH-HHHHHHHHHHcCeEEecCCCCCCHHHHHHHHHhCCCCEEE
Confidence 35788877665544443 4588999999887775532 2344788999999988888777788999999999999988
Q ss_pred cch
Q 010344 235 TVP 237 (512)
Q Consensus 235 ~~P 237 (512)
..+
T Consensus 128 ~~~ 130 (539)
T 1mdb_A 128 IPD 130 (539)
T ss_dssp EES
T ss_pred ecc
Confidence 765
No 75
>4aec_A Cysteine synthase, mitochondrial; lyase, cysteine synthesis, assimilatory sulfate reduction, S plant inorganic sulfur uptake; HET: PLP; 2.40A {Arabidopsis thaliana}
Probab=40.67 E-value=80 Score=30.22 Aligned_cols=67 Identities=15% Similarity=0.149 Sum_probs=48.6
Q ss_pred HHHHHhcc-CCCCCEEEEEcCCCHHHHHHHHHHHHhcceEeecCCCcCHHHHHHHHHhcCccEEEecc
Q 010344 6 VANALDTM-FSKGDAIAIDMPMTVHAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQD 72 (512)
Q Consensus 6 ~a~~L~~~-i~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~iv~~~ 72 (512)
+..+..+- +++|....+....+-.-....+++.+.|.-++.+-|...+..-...++..++++++++.
T Consensus 162 i~~A~~~G~l~~g~~~VV~aSsGNhG~AlA~aAa~~Gl~~~IvmP~~~s~~k~~~~r~~GAeVv~v~~ 229 (430)
T 4aec_A 162 VTDAEQKGFISPGKSVLVEPTSGNTGIGLAFIAASRGYRLILTMPASMSMERRVLLKAFGAELVLTDP 229 (430)
T ss_dssp HHHHHHTTSCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECG
T ss_pred HHHHHHcCCCCCCCcEEEEECCCHHHHHHHHHHHHhCCEEEEEEcCCCCHHHHHHHHHCCCEEEEECC
Confidence 34444444 77886555556667777888888889999876665665566667788999999999974
No 76
>4h1h_A LMO1638 protein; MCCF-like, csgid, MCCF homolog, structural genomics, niaid, institute of allergy and infectious diseases; 2.46A {Listeria monocytogenes}
Probab=40.32 E-value=1.1e+02 Score=27.91 Aligned_cols=60 Identities=23% Similarity=0.202 Sum_probs=39.5
Q ss_pred CCCCCEEEEEcCCCH------HHHHHHHH-HHHhcceEeecCCCc------------CHHHHHHHHHhcCccEEEeccc
Q 010344 14 FSKGDAIAIDMPMTV------HAVIIYLA-IILAGYVVVSIADSF------------AAREIATRLRVSKAKGIFTQDF 73 (512)
Q Consensus 14 i~~gd~V~i~~~n~~------~~~~~~lA-~~~~G~~~v~l~~~~------------~~~~l~~~l~~~~~~~iv~~~~ 73 (512)
+++||+|+|+.|.+. +-+-..+. +-..|.-++.-+... ..+++...+.+-..++|+|..-
T Consensus 9 L~~GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~a~~Dp~i~aI~~~rG 87 (327)
T 4h1h_A 9 LKQGDEIRIIAPSRSIGIMADNQVEIAVNRLTDMGFKVTFGEHVAEMDCMMSSSIRSRVADIHEAFNDSSVKAILTVIG 87 (327)
T ss_dssp CCTTCEEEEECSSSCGGGSCHHHHHHHHHHHHHTTCEEEECTTTTCCCTTSSCCHHHHHHHHHHHHHCTTEEEEEESCC
T ss_pred CCCCCEEEEEeCCCCcCccCHHHHHHHHHHHHhCCCEEEECcchhhccCcccCCHHHHHHHHHHHhhCCCCCEEEEcCC
Confidence 899999999999752 22222222 234577665543221 3357888888889999999854
No 77
>1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A*
Probab=40.00 E-value=1.3e+02 Score=27.47 Aligned_cols=57 Identities=7% Similarity=-0.011 Sum_probs=35.2
Q ss_pred CCCCEEEEEcCCCHHHHHHHHHHHHhcceEeecCCC----cCHHHHHHHHHhcCccEEEecc
Q 010344 15 SKGDAIAIDMPMTVHAVIIYLAIILAGYVVVSIADS----FAAREIATRLRVSKAKGIFTQD 72 (512)
Q Consensus 15 ~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~----~~~~~l~~~l~~~~~~~iv~~~ 72 (512)
++||.|.+..+....+.....++...|+.++.++.. ...+++...++. ++++|+...
T Consensus 87 ~~gd~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~-~~~~v~~~~ 147 (384)
T 1eg5_A 87 KRKRTIITTPIEHKAVLETMKYLSMKGFKVKYVPVDSRGVVKLEELEKLVDE-DTFLVSIMA 147 (384)
T ss_dssp TTCCEEEECTTSCHHHHHHHHHHHHTTCEEEECCBCTTSCBCHHHHHHHCCT-TEEEEEEES
T ss_pred CCCCEEEECCCCchHHHHHHHHHHhcCCEEEEEccCCCCccCHHHHHHHhCC-CCeEEEEEC
Confidence 688888777766665554444445567766555432 456777766654 566666554
No 78
>1z7w_A Cysteine synthase; transferase; HET: PLP; 2.20A {Arabidopsis thaliana} SCOP: c.79.1.1 PDB: 1z7y_A* 2isq_A*
Probab=38.96 E-value=91 Score=28.35 Aligned_cols=67 Identities=13% Similarity=0.138 Sum_probs=45.3
Q ss_pred HHHHHhcc-CCCCCEEEEEcCCCHHHHHHHHHHHHhcceEeecCCCcCHHHHHHHHHhcCccEEEecc
Q 010344 6 VANALDTM-FSKGDAIAIDMPMTVHAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQD 72 (512)
Q Consensus 6 ~a~~L~~~-i~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~iv~~~ 72 (512)
+..+..+- +++|+...+....+-.-..+.+++.+.|.-++.+-|...+..-...++..++++++++.
T Consensus 54 l~~a~~~G~~~~~~~~vv~assGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~ 121 (322)
T 1z7w_A 54 ISDAEKKGLIKPGESVLIEPTSGNTGVGLAFTAAAKGYKLIITMPASMSTERRIILLAFGVELVLTDP 121 (322)
T ss_dssp HHHHHHTTSCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECG
T ss_pred HHHHHHcCCCCCCCCEEEEeCCCHHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHcCCEEEEeCC
Confidence 33333334 67775344445667777777788889998776655554455566788889999999875
No 79
>3dwg_A Cysteine synthase B; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} SCOP: c.79.1.0 PDB: 3fgp_A* 3dki_A* 3dwi_A*
Probab=38.65 E-value=1.1e+02 Score=27.86 Aligned_cols=66 Identities=18% Similarity=0.199 Sum_probs=46.6
Q ss_pred HHHHHhcc-CCCCCEEEEEcCCCHHHHHHHHHHHHhcceEeecCCCcCHHHHHHHHHhcCccEEEecc
Q 010344 6 VANALDTM-FSKGDAIAIDMPMTVHAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQD 72 (512)
Q Consensus 6 ~a~~L~~~-i~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~iv~~~ 72 (512)
+..++.+. +++++.|... ..+-.-..+.+++.+.|.-++.+-|...+..-...++..++++++++.
T Consensus 61 l~~a~~~g~l~~~~~vv~a-SsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~ 127 (325)
T 3dwg_A 61 IEQAEADGLLRPGATILEP-TSGNTGISLAMAARLKGYRLICVMPENTSVERRQLLELYGAQIIFSAA 127 (325)
T ss_dssp HHHHHHTTCCCTTCEEEEE-CSSHHHHHHHHHHHHHTCEEEEEEESSSCHHHHHHHHHHTCEEEEECS
T ss_pred HHHHHHcCCCCCCCEEEEe-CCcHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHCCCEEEEECC
Confidence 34444444 6777776654 456666777778888898876665555556667788999999999975
No 80
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*
Probab=37.86 E-value=54 Score=33.18 Aligned_cols=77 Identities=8% Similarity=-0.067 Sum_probs=58.4
Q ss_pred EecCchhHHHHHHhhc---cccccCCcEEEecCCccchhhhHHHHhhhccCceEEEecCCCchhhHHHHHHhcCceEEec
Q 010344 159 PWTQLSPIRCAAEAWG---HIDMKVGDVYCWPTNLGWVMGPIILFSSFLSGAALALYHGSPLERSFGKFVQDSGVSVLGT 235 (512)
Q Consensus 159 ~~s~~~~~~~~~~~~~---~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~l~~~~~t~l~~ 235 (512)
.+|.+.+...+..+.. ..++.+++++...++-+.. ....+++.+..|+..+.++.....+++...+++.++..++.
T Consensus 52 ~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~-~vva~lailkaGa~~vpld~~~p~~~l~~il~~~~~~~vl~ 130 (620)
T 4dg8_A 52 SVDYRQLLDSAEQLSDYLLEHYPQPGVCLGVYGEYSRE-SITCLLAILLSGHHYLYIDLKQPAAWNAELCRQVDCRLILD 130 (620)
T ss_dssp EEEHHHHHHHHHHHHHHHHHHCCSSCCEEEEESSSCHH-HHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTEEEEEE
T ss_pred cCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHH-HHHHHHHHHHhCCEEEeeCccChHHHHHHHHHhCCCcEEEe
Confidence 4788877655544443 4578999998887775432 23448899999999999987777889999999999998884
Q ss_pred c
Q 010344 236 V 236 (512)
Q Consensus 236 ~ 236 (512)
.
T Consensus 131 ~ 131 (620)
T 4dg8_A 131 C 131 (620)
T ss_dssp C
T ss_pred c
Confidence 4
No 81
>1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A
Probab=36.31 E-value=1.3e+02 Score=27.62 Aligned_cols=57 Identities=19% Similarity=0.320 Sum_probs=40.4
Q ss_pred CCCCCEEEEEcC-CCHHHHHHHHHHHHhcce-EeecCCCcCHHHHHHHHHhcCccEEEec
Q 010344 14 FSKGDAIAIDMP-MTVHAVIIYLAIILAGYV-VVSIADSFAAREIATRLRVSKAKGIFTQ 71 (512)
Q Consensus 14 i~~gd~V~i~~~-n~~~~~~~~lA~~~~G~~-~v~l~~~~~~~~l~~~l~~~~~~~iv~~ 71 (512)
+++|++|+|+.. -.+-..++.+|-. .|+. ++..+..-..++....++..++..++..
T Consensus 165 ~~~g~~VlV~Ga~G~vG~~aiqlak~-~Ga~vi~~~~~~~~~~~~~~~~~~lGa~~vi~~ 223 (357)
T 1zsy_A 165 LQPGDSVIQNASNSGVGQAVIQIAAA-LGLRTINVVRDRPDIQKLSDRLKSLGAEHVITE 223 (357)
T ss_dssp CCTTCEEEESSTTSHHHHHHHHHHHH-HTCEEEEEECCCSCHHHHHHHHHHTTCSEEEEH
T ss_pred cCCCCEEEEeCCcCHHHHHHHHHHHH-cCCEEEEEecCccchHHHHHHHHhcCCcEEEec
Confidence 999999999997 5567777777664 5874 4445454445555667788899887754
No 82
>2q3b_A Cysteine synthase A; pyridoxal-5'-phosphate, sulphur metabolism, cysteine biosynthesis, transferase; HET: LLP; 1.80A {Mycobacterium tuberculosis} PDB: 2q3c_A* 2q3d_A* 3rr2_A
Probab=36.27 E-value=1.2e+02 Score=27.32 Aligned_cols=58 Identities=17% Similarity=0.084 Sum_probs=41.3
Q ss_pred CCCCCEEEEEcCCCHHHHHHHHHHHHhcceEeecCCCcCHHHHHHHHHhcCccEEEecc
Q 010344 14 FSKGDAIAIDMPMTVHAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQD 72 (512)
Q Consensus 14 i~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~iv~~~ 72 (512)
+++|+.|.. ...+-.-..+.+++.+.|.-++.+-|...+..-...++..++++++++.
T Consensus 64 ~~~g~~vv~-assGN~g~alA~~a~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~ 121 (313)
T 2q3b_A 64 IKPDTIILE-PTSGNTGIALAMVCAARGYRCVLTMPETMSLERRMLLRAYGAELILTPG 121 (313)
T ss_dssp CCTTCEEEE-ECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECG
T ss_pred CCCCCEEEE-eCCCHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHCCCEEEEeCC
Confidence 567776655 5556666667777788898776655554445556678899999999885
No 83
>3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0
Probab=35.54 E-value=1.1e+02 Score=28.22 Aligned_cols=56 Identities=18% Similarity=0.127 Sum_probs=40.0
Q ss_pred CCCCCEEEEEcCCCHHHHHHHHHHHHhcceEeecCCC-------cCHHHHHHHHHhcCccEEEecc
Q 010344 14 FSKGDAIAIDMPMTVHAVIIYLAIILAGYVVVSIADS-------FAAREIATRLRVSKAKGIFTQD 72 (512)
Q Consensus 14 i~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~-------~~~~~l~~~l~~~~~~~iv~~~ 72 (512)
+++||.|.+..+....+. .++...|+.++.++.. ...+++...++..++++|+...
T Consensus 106 ~~~gd~vl~~~~~~~~~~---~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~v~i~~ 168 (391)
T 3dzz_A 106 TSPGDQILVQEPVYNMFY---SVIEGNGRRVISSDLIYENSKYSVNWADLEEKLATPSVRMMVFCN 168 (391)
T ss_dssp SCTTCEEEECSSCCHHHH---HHHHHTTCEEEECCCEEETTEEECCHHHHHHHHTSTTEEEEEEES
T ss_pred CCCCCeEEECCCCcHHHH---HHHHHcCCEEEEeeeeecCCceeecHHHHHHHHhccCceEEEEEC
Confidence 789999888777666543 3455678877766543 6788888888766788776554
No 84
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}
Probab=35.43 E-value=77 Score=31.98 Aligned_cols=89 Identities=16% Similarity=-0.000 Sum_probs=64.7
Q ss_pred CCCeEEEEecCCCCCCCceEEecCchhHHHHHHhhc---cccccCCcEEEecCCccchhhhHHHHhhhccCceEEEecCC
Q 010344 139 VDSVINILFSSGTTGEPKAIPWTQLSPIRCAAEAWG---HIDMKVGDVYCWPTNLGWVMGPIILFSSFLSGAALALYHGS 215 (512)
Q Consensus 139 ~~~~~~i~~TSGtTG~pK~v~~s~~~~~~~~~~~~~---~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~ 215 (512)
++.+|++. | .-.+|.+.+...+..+.. ..++.++|++...++-+.. ....+++++..|+..+..+..
T Consensus 39 pd~~Av~~---~------~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~V~l~~~~s~~-~vva~lA~l~aG~~~vpl~~~ 108 (617)
T 3rg2_A 39 SDSIAVID---G------ERQLSYRELNQAADNLACSLRRQGIKPGETALVQLGNVAE-LYITFFALLKLGVAPVLALFS 108 (617)
T ss_dssp CCSEEEEE---T------TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHH-HHHHHHHHHHHTCEEEEECTT
T ss_pred CCCeEEec---C------CceEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHH-HHHHHHHHHhcCeEEccCCcc
Confidence 56677663 1 134788877665544443 4588999999887765432 233478999999999988877
Q ss_pred CchhhHHHHHHhcCceEEecch
Q 010344 216 PLERSFGKFVQDSGVSVLGTVP 237 (512)
Q Consensus 216 ~~~~~~~~~l~~~~~t~l~~~P 237 (512)
...+++...+++.++..++...
T Consensus 109 ~~~~~l~~~l~~~~~~~vl~~~ 130 (617)
T 3rg2_A 109 HQRSELNAYASQIEPALLIADR 130 (617)
T ss_dssp CCHHHHHHHHHHHCCSEEEEET
T ss_pred ccHHHHHHHHhhcCceEEEecc
Confidence 7788999999999999988765
No 85
>4hvk_A Probable cysteine desulfurase 2; transferase and ISCS, transferase; HET: PMP PG4; 1.43A {Archaeoglobus fulgidus} PDB: 4eb7_A* 4eb5_A*
Probab=35.25 E-value=1.5e+02 Score=26.96 Aligned_cols=57 Identities=18% Similarity=0.115 Sum_probs=33.6
Q ss_pred CCCCEEEEEcCCCHHHHHHHHHHHHhcceEeecCCC----cCHHHHHHHHHhcCccEEEecc
Q 010344 15 SKGDAIAIDMPMTVHAVIIYLAIILAGYVVVSIADS----FAAREIATRLRVSKAKGIFTQD 72 (512)
Q Consensus 15 ~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~----~~~~~l~~~l~~~~~~~iv~~~ 72 (512)
++||.|.+..+..+.+......+.+.|+.++.++.+ ...+++...++. ++++|+...
T Consensus 86 ~~gd~vi~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~-~~~~v~~~~ 146 (382)
T 4hvk_A 86 RKGKHILVSAVEHMSVINPAKFLQKQGFEVEYIPVGKYGEVDVSFIDQKLRD-DTILVSVQH 146 (382)
T ss_dssp GGCCEEEEETTCCHHHHHHHHHHHHTTCEEEEECBCTTSCBCHHHHHHHCCT-TEEEEECCS
T ss_pred CCCCEEEECCCCcHHHHHHHHHHHhcCCEEEEeccCCCCCcCHHHHHHHhcc-CceEEEEEC
Confidence 778887777776666655544444556665554432 355666666643 455555554
No 86
>1wy5_A TILS, hypothetical UPF0072 protein AQ_1887; N-type ATP-ppase, structural genomics, translation, NPPSFA; 2.42A {Aquifex aeolicus} SCOP: c.26.2.5 d.229.1.1 PDB: 2e21_A* 2e89_A*
Probab=34.48 E-value=1.7e+02 Score=26.39 Aligned_cols=68 Identities=12% Similarity=0.079 Sum_probs=49.6
Q ss_pred HHHHHHHhcc--CCCCCEEEEEcCCCHHHHHHHHHHHHh----c---ceEeecCCCcC---H---HHHHHHHHhcCccEE
Q 010344 4 RLVANALDTM--FSKGDAIAIDMPMTVHAVIIYLAIILA----G---YVVVSIADSFA---A---REIATRLRVSKAKGI 68 (512)
Q Consensus 4 ~~~a~~L~~~--i~~gd~V~i~~~n~~~~~~~~lA~~~~----G---~~~v~l~~~~~---~---~~l~~~l~~~~~~~i 68 (512)
+++.+++... +.++++|++.++-+.|..+++..+... | ..++-+|+.+. . +.+..+.+..+..+.
T Consensus 9 ~~~~~~i~~~~l~~~~~~vlva~SGG~DS~~Ll~ll~~~~~~~g~~~v~av~vd~g~r~~s~~~~~~v~~~a~~lgi~~~ 88 (317)
T 1wy5_A 9 RKVLALQNDEKIFSGERRVLIAFSGGVDSVVLTDVLLKLKNYFSLKEVALAHFNHMLRESAERDEEFCKEFAKERNMKIF 88 (317)
T ss_dssp HHHHHHHHHHCSCSSCCEEEEECCSSHHHHHHHHHHHHSTTTTTCSEEEEEEEECCSSTHHHHHHHHHHHHHHHHTCCEE
T ss_pred HHHHHHHHHcCCCCCCCEEEEEecchHHHHHHHHHHHHHHHHcCCCEEEEEEEECCCCcccHHHHHHHHHHHHHcCCcEE
Confidence 5677777776 899999999999999999988777764 3 44566777663 2 235556666777766
Q ss_pred Eec
Q 010344 69 FTQ 71 (512)
Q Consensus 69 v~~ 71 (512)
+.+
T Consensus 89 v~~ 91 (317)
T 1wy5_A 89 VGK 91 (317)
T ss_dssp EEE
T ss_pred EEE
Confidence 655
No 87
>2pqm_A Cysteine synthase; OASS, PLP, lyase; HET: PLP; 1.86A {Entamoeba histolytica} PDB: 3bm5_A*
Probab=34.43 E-value=1.3e+02 Score=27.55 Aligned_cols=58 Identities=19% Similarity=0.115 Sum_probs=41.2
Q ss_pred CCCCCEEEEEcCCCHHHHHHHHHHHHhcceEeecCCCcCHHHHHHHHHhcCccEEEecc
Q 010344 14 FSKGDAIAIDMPMTVHAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQD 72 (512)
Q Consensus 14 i~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~iv~~~ 72 (512)
+++|+.|..... +-.-..+.+++...|.-++.+-|...+..-...++..++++++++.
T Consensus 75 ~~~g~~vv~aSs-GN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~ 132 (343)
T 2pqm_A 75 LKPGMEIIESTS-GNTGIALCQAGAVFGYRVNIAMPSTMSVERQMIMKAFGAELILTEG 132 (343)
T ss_dssp SCTTCEEEEECS-SHHHHHHHHHHHHHTCCEEEEEETTSCHHHHHHHHHTTCEEEEECG
T ss_pred CCCCCEEEEECC-cHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHCCCEEEEECC
Confidence 677776666543 5556666677778888776655554455566788889999999875
No 88
>4eb5_A Probable cysteine desulfurase 2; scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_A*
Probab=34.43 E-value=1.3e+02 Score=27.68 Aligned_cols=56 Identities=18% Similarity=0.101 Sum_probs=25.0
Q ss_pred CCCCEEEEEcCCCHHHHHHHHHHHHhcceEeecCC--C--cCHHHHHHHHHhcCccEEEec
Q 010344 15 SKGDAIAIDMPMTVHAVIIYLAIILAGYVVVSIAD--S--FAAREIATRLRVSKAKGIFTQ 71 (512)
Q Consensus 15 ~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~--~--~~~~~l~~~l~~~~~~~iv~~ 71 (512)
++||.|.+.-+....+.-....+...|+.++.++. . ...+++...++. ++++|+..
T Consensus 86 ~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~-~~~~v~~~ 145 (382)
T 4eb5_A 86 RKGKHILVSAVEHMSVINPAKFLQKQGFEVEYIPVGKYGEVDVSFIDQKLRD-DTILVSVQ 145 (382)
T ss_dssp GGCCEEEEETTCCHHHHHHHHHHTTTTCEEEEECBCTTSCBCHHHHHHHCCT-TEEEEECC
T ss_pred CCCCEEEECCCcchHHHHHHHHHHhCCcEEEEeccCCCCccCHHHHHHHhcC-CCeEEEEe
Confidence 56666665555544433332222234554443332 1 344555555443 34444444
No 89
>3a2k_A TRNA(Ile)-lysidine synthase; ligase, pseudo-knot, ligase/RNA complex; 3.65A {Geobacillus kaustophilus}
Probab=34.22 E-value=1.4e+02 Score=28.93 Aligned_cols=69 Identities=9% Similarity=0.038 Sum_probs=51.6
Q ss_pred HHHHHHHhcc--CCCCCEEEEEcCCCHHHHHHHHHHHH----hc--ceEeecCCCcC-H------HHHHHHHHhcCccEE
Q 010344 4 RLVANALDTM--FSKGDAIAIDMPMTVHAVIIYLAIIL----AG--YVVVSIADSFA-A------REIATRLRVSKAKGI 68 (512)
Q Consensus 4 ~~~a~~L~~~--i~~gd~V~i~~~n~~~~~~~~lA~~~----~G--~~~v~l~~~~~-~------~~l~~~l~~~~~~~i 68 (512)
+++.+++.+. +.++++|++.++-+.|..+++..+.. .| ..++-+++.+. . +.+..+.+..+..+.
T Consensus 3 ~kv~~~i~~~~l~~~~~~vlVa~SGG~DS~~Ll~ll~~~~~~~~~~v~avhvdhglrg~~s~~~~~~v~~~~~~lgi~~~ 82 (464)
T 3a2k_A 3 DKVRAFIHRHQLLSEGAAVIVGVSGGPDSLALLHVFLSLRDEWKLQVIAAHVDHMFRGRESEEEMEFVKRFCVERRILCE 82 (464)
T ss_dssp SHHHHHHHHTCSSSCSSBEEEECCSSHHHHHHHHHHHHHHHTTTCBCEEEEEECTTCTHHHHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHcCCCCCCCEEEEEEcCcHHHHHHHHHHHHHHHHcCCeEEEEEEECCCCccccHHHHHHHHHHHHHcCCcEE
Confidence 4677788776 89999999999999999998877766 23 55677787775 2 245666777777776
Q ss_pred Eecc
Q 010344 69 FTQD 72 (512)
Q Consensus 69 v~~~ 72 (512)
+.+-
T Consensus 83 v~~~ 86 (464)
T 3a2k_A 83 TAQI 86 (464)
T ss_dssp EEEC
T ss_pred EEEe
Confidence 6653
No 90
>3zrp_A Serine-pyruvate aminotransferase (AGXT); HET: PLP; 1.75A {Sulfolobus solfataricus} PDB: 3zrq_A* 3zrr_A*
Probab=34.20 E-value=1.7e+02 Score=26.77 Aligned_cols=59 Identities=14% Similarity=-0.013 Sum_probs=37.7
Q ss_pred CCCCCEEEEEcCCCHHHHHHHHHHHHhcceEeecCCC----cCHHHHHHHHHhcCccEEEeccc
Q 010344 14 FSKGDAIAIDMPMTVHAVIIYLAIILAGYVVVSIADS----FAAREIATRLRVSKAKGIFTQDF 73 (512)
Q Consensus 14 i~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~----~~~~~l~~~l~~~~~~~iv~~~~ 73 (512)
+++||.|.+.-+..... ...-.+...|+.++.++.. ...+++...++..++++|+....
T Consensus 74 ~~~gd~vi~~~~~~~~~-~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~ 136 (384)
T 3zrp_A 74 LKPNDKILVVSNGVFGD-RWEQIFKRYPVNVKVLRPSPGDYVKPGEVEEEVRKSEYKLVALTHV 136 (384)
T ss_dssp CCTTCEEEEECSSHHHH-HHHHHHTTSSCEEEEECCSTTCCCCHHHHHHHHHHSCEEEEEEESE
T ss_pred cCCCCEEEEecCCcchH-HHHHHHHHcCCcEEEecCCCCCCCCHHHHHHHHHhCCCcEEEEeCC
Confidence 89999988876643221 1122234557766555433 47788999888877887777653
No 91
>2v03_A Cysteine synthase B; pyridoxal phosphate, cysteine biosynthesis, transferase, ENZ kinetics, enzymatic sythesis of novel compounds; HET: LLP CIT; 1.33A {Escherichia coli} PDB: 2bhs_A* 2bht_A* 2jc3_A*
Probab=33.07 E-value=1.7e+02 Score=26.27 Aligned_cols=58 Identities=16% Similarity=0.200 Sum_probs=41.6
Q ss_pred CCCCCEEEEEcCCCHHHHHHHHHHHHhcceEeecCCCcCHHHHHHHHHhcCccEEEecc
Q 010344 14 FSKGDAIAIDMPMTVHAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQD 72 (512)
Q Consensus 14 i~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~iv~~~ 72 (512)
+++|+.|.... .+-.-..+.+++.+.|.-++.+-|...+..-...++..++++++++.
T Consensus 58 ~~~g~~vv~~s-sGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~ 115 (303)
T 2v03_A 58 IKPGDVLIEAT-SGNTGIALAMIAALKGYRMKLLMPDNMSQERRAAMRAYGAELILVTK 115 (303)
T ss_dssp CCTTCEEEEEC-SSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECT
T ss_pred CCCCCEEEEEC-CcHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHcCCEEEEECC
Confidence 66777666655 46666666777778898776665554455566788899999999885
No 92
>3sr3_A Microcin immunity protein MCCF; csgid, structural genomics, MCCF protein, center for structu genomics of infectious diseases, immune system; 1.50A {Bacillus anthracis} PDB: 3gjz_A 3t5m_A* 3u1b_A* 3tyx_A*
Probab=32.72 E-value=1.7e+02 Score=26.75 Aligned_cols=60 Identities=17% Similarity=0.159 Sum_probs=39.8
Q ss_pred CCCCCEEEEEcCCCHH------HHHHHHHHH-HhcceEeecCCC------------cCHHHHHHHHHhcCccEEEeccc
Q 010344 14 FSKGDAIAIDMPMTVH------AVIIYLAII-LAGYVVVSIADS------------FAAREIATRLRVSKAKGIFTQDF 73 (512)
Q Consensus 14 i~~gd~V~i~~~n~~~------~~~~~lA~~-~~G~~~v~l~~~------------~~~~~l~~~l~~~~~~~iv~~~~ 73 (512)
+++||+|+|+.|.+.- -+-.....+ ..|.-++.-... ...+++...+.+-.+++|+|..-
T Consensus 10 L~~GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~ag~d~~Ra~dL~~a~~Dp~i~aI~~~rG 88 (336)
T 3sr3_A 10 LKYGDTIGIYSPSSPVTYTSPKRFERAKSYLLQKGFHILEGSLTGRYDYYRSGSIQERAKELNALIRNPNVSCIMSTIG 88 (336)
T ss_dssp CCTTCEEEEECSSSCHHHHCHHHHHHHHHHHHHTTCEEEECTTTTCCBTTBSSCHHHHHHHHHHHHHCTTEEEEEESCC
T ss_pred CCCCCEEEEEeCCCCccccCHHHHHHHHHHHHhCCCEEEEcccccccccccCCCHHHHHHHHHHHhhCCCCCEEEEccc
Confidence 8999999999998842 222223333 367776653221 12356777888889999999864
No 93
>4e5s_A MCCFLIKE protein (BA_5613); structural genomics, center for structural genomi infectious diseases, csgid, serine peptidase S66; 1.95A {Bacillus anthracis}
Probab=32.69 E-value=1.9e+02 Score=26.49 Aligned_cols=60 Identities=18% Similarity=0.205 Sum_probs=40.2
Q ss_pred CCCCCEEEEEcCCCH------HHHHHHHHHH-HhcceEeecCCCc------------CHHHHHHHHHhcCccEEEeccc
Q 010344 14 FSKGDAIAIDMPMTV------HAVIIYLAII-LAGYVVVSIADSF------------AAREIATRLRVSKAKGIFTQDF 73 (512)
Q Consensus 14 i~~gd~V~i~~~n~~------~~~~~~lA~~-~~G~~~v~l~~~~------------~~~~l~~~l~~~~~~~iv~~~~ 73 (512)
+++||+|+|+.|.+. +-+-.....+ ..|.-++.-+... ..+++...+.+-.+++|+|..-
T Consensus 9 L~~GD~I~ivaPS~~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~ag~d~~Ra~dL~~a~~Dp~i~aI~~~rG 87 (331)
T 4e5s_A 9 LKKGDEIRVISPSCSLSIVSTENRRLAVKRLTELGFHVTFSTHAEEIDRFASSSISSRVQDLHEAFRDPNVKAILTTLG 87 (331)
T ss_dssp CCTTCEEEEECSSSCGGGSCHHHHHHHHHHHHHTTCEEEECTTTTCCCTTSSCCHHHHHHHHHHHHHCTTEEEEEESCC
T ss_pred CCCcCEEEEEeCCCCccccCHHHHHHHHHHHHhCCCEEEECCchhcccCccCCCHHHHHHHHHHHhhCCCCCEEEEccc
Confidence 899999999999875 2222233333 3677766543221 2356777888889999999754
No 94
>2egu_A Cysteine synthase; O-acetylserine sulfhydrase, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; 1.90A {Geobacillus kaustophilus}
Probab=32.30 E-value=1.3e+02 Score=26.94 Aligned_cols=58 Identities=19% Similarity=0.178 Sum_probs=40.1
Q ss_pred CCCCCEEEEEcCCCHHHHHHHHHHHHhcceEeecCCCcCHHHHHHHHHhcCccEEEecc
Q 010344 14 FSKGDAIAIDMPMTVHAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQD 72 (512)
Q Consensus 14 i~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~iv~~~ 72 (512)
+++|+.|.. ...+-.-..+.++|.+.|.-++.+-|...+..-...++..++++++++.
T Consensus 62 ~~~g~~vv~-assGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~v~~~~~ 119 (308)
T 2egu_A 62 LKPGDTIVE-PTSGNTGIGLAMVAAAKGYKAVLVMPDTMSLERRNLLRAYGAELVLTPG 119 (308)
T ss_dssp CCTTCEEEE-ECCHHHHHHHHHHHHHHTCEEEEEEESCSCHHHHHHHHHTTCEEEEECG
T ss_pred CCCCCEEEE-eCCCHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEECC
Confidence 567766654 5555566666777778898776655544445556678899999999875
No 95
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*
Probab=31.62 E-value=67 Score=31.45 Aligned_cols=78 Identities=14% Similarity=0.110 Sum_probs=57.7
Q ss_pred EEecCchhHHHHHHhhccccccCCcEEEecCCccchhhhHHHHhhhccCceEEEecCCCchhhHHHHHHhcCceEEecch
Q 010344 158 IPWTQLSPIRCAAEAWGHIDMKVGDVYCWPTNLGWVMGPIILFSSFLSGAALALYHGSPLERSFGKFVQDSGVSVLGTVP 237 (512)
Q Consensus 158 v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~l~~~~~t~l~~~P 237 (512)
-.+|.+.+...+......+ ..++++...++-+.. ....+++++..|+..+.++.....+++...+++.++..++..+
T Consensus 47 ~~~Ty~eL~~~~~~~A~~L--~~~~~V~i~~~~~~~-~~~~~la~~~~Ga~~vpl~~~~~~~~l~~il~~~~~~~vi~~~ 123 (505)
T 3nyq_A 47 RSLTYAELAAAAGATAGRI--GGAGRVAVWATPAME-TGVAVVAALLAGVAAVPLNPKSGDKELAHILSDSAPSLVLAPP 123 (505)
T ss_dssp EEEEHHHHHHHHHHHHTTC--C---CEEEECCSSHH-HHHHHHHHHHHTCCEEEECTTCCHHHHHHHHHHHCCSEEEECT
T ss_pred eeeeHHHHHHHHHHHHhhc--cCCCEEEEEcCCCHH-HHHHHHHHHHhCCEEEEcCCCCCHHHHHHHHHHCCCCEEEECC
Confidence 3578888887777666544 357777776665432 2344889999999999998888889999999999999998865
Q ss_pred H
Q 010344 238 S 238 (512)
Q Consensus 238 ~ 238 (512)
.
T Consensus 124 ~ 124 (505)
T 3nyq_A 124 D 124 (505)
T ss_dssp T
T ss_pred c
Confidence 4
No 96
>3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI, transferase; HET: PLP; 2.05A {Escherichia coli} PDB: 3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B*
Probab=31.59 E-value=2.3e+02 Score=26.42 Aligned_cols=58 Identities=14% Similarity=0.114 Sum_probs=35.2
Q ss_pred CCCCCEEEEEcCCCHHHHHHHHHHHHhcceEeecCCC----cCHHHHHHHHHhcCccEEEecc
Q 010344 14 FSKGDAIAIDMPMTVHAVIIYLAIILAGYVVVSIADS----FAAREIATRLRVSKAKGIFTQD 72 (512)
Q Consensus 14 i~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~----~~~~~l~~~l~~~~~~~iv~~~ 72 (512)
.++||.|.+.-+....+...+..+...|+.++.++.. ...+++...++. ++++|+...
T Consensus 110 ~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~-~~~~v~~~~ 171 (423)
T 3lvm_A 110 QKKGKHIITSKTEHKAVLDTCRQLEREGFEVTYLAPQRNGIIDLKELEAAMRD-DTILVSIMH 171 (423)
T ss_dssp TTTCCEEEEETTSCHHHHHHHHHHHHTTCEEEEECCCTTSCCCHHHHHHHCCT-TEEEEECCS
T ss_pred ccCCCEEEECCccchHHHHHHHHHHHcCCEEEEeccCCCCccCHHHHHHhcCC-CcEEEEEeC
Confidence 4578888877777766655544445557665554432 246677766654 556666554
No 97
>3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes}
Probab=31.38 E-value=1.7e+02 Score=27.91 Aligned_cols=57 Identities=12% Similarity=0.135 Sum_probs=33.3
Q ss_pred CCCCCEEEEEcCCCHHHHHHHH-HHHHhcceEeecCCCcCHHHHHHHHHhcCccEEEecc
Q 010344 14 FSKGDAIAIDMPMTVHAVIIYL-AIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQD 72 (512)
Q Consensus 14 i~~gd~V~i~~~n~~~~~~~~l-A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~iv~~~ 72 (512)
+++||.|.+.-+........+- .+...|+.++.++.. ..+.+...++. ++++|+...
T Consensus 118 ~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~~~~~v~~~-d~~~l~~ai~~-~t~~v~~e~ 175 (430)
T 3ri6_A 118 ARAGDSVVTTDRLFGHTLSLFQKTLPSFGIEVRFVDVM-DSLAVEHACDE-TTKLLFLET 175 (430)
T ss_dssp CCTTCEEEEETTCCHHHHHHHHTHHHHTTCEEEEECTT-CHHHHHHHCCT-TEEEEEEES
T ss_pred hCCCCEEEEcCCCchhHHHHHHHHHHHcCCEEEEeCCC-CHHHHHHhhCC-CCeEEEEEC
Confidence 7778877666555544443332 455667776666554 55666666543 556666543
No 98
>3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, PY phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum}
Probab=31.30 E-value=2.2e+02 Score=26.35 Aligned_cols=56 Identities=18% Similarity=0.137 Sum_probs=40.9
Q ss_pred CCCCCEEEEEcCCCHHHHHHHHHHHHhcceEeecCCCcCHHHHHHHHHhc---CccEEEeccc
Q 010344 14 FSKGDAIAIDMPMTVHAVIIYLAIILAGYVVVSIADSFAAREIATRLRVS---KAKGIFTQDF 73 (512)
Q Consensus 14 i~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~---~~~~iv~~~~ 73 (512)
+++||.|.+..+....+.. ++...|+.+++++. ...+++...++.. ++++|++...
T Consensus 124 ~~~gd~V~~~~p~~~~~~~---~~~~~g~~~~~v~~-~d~~~l~~~l~~~~~~~~~~v~~~~~ 182 (398)
T 3a2b_A 124 MGRNDYILLDERDHASIID---GSRLSFSKVIKYGH-NNMEDLRAKLSRLPEDSAKLICTDGI 182 (398)
T ss_dssp SCTTCEEEEETTCCHHHHH---HHHHSSSEEEEECT-TCHHHHHHHHHTSCSSSCEEEEEESB
T ss_pred hCCCCEEEECCccCHHHHH---HHHHcCCceEEeCC-CCHHHHHHHHHhhccCCceEEEEeCC
Confidence 7899999888887766543 45567888877754 5678888888875 5777776654
No 99
>3tla_A MCCF; serine protease, hydrolase; 1.20A {Escherichia coli} PDB: 3tle_A* 3tlg_A 3tlb_A* 3tlc_A* 3tlz_A* 3tly_A
Probab=30.71 E-value=1.7e+02 Score=27.24 Aligned_cols=60 Identities=15% Similarity=0.065 Sum_probs=39.7
Q ss_pred CCCCCEEEEEcCCCHH------HHHHHHHHH-HhcceEeecCCCc------------CHHHHHHHHHhcCccEEEeccc
Q 010344 14 FSKGDAIAIDMPMTVH------AVIIYLAII-LAGYVVVSIADSF------------AAREIATRLRVSKAKGIFTQDF 73 (512)
Q Consensus 14 i~~gd~V~i~~~n~~~------~~~~~lA~~-~~G~~~v~l~~~~------------~~~~l~~~l~~~~~~~iv~~~~ 73 (512)
+++||+|+|+.|.+.- -+-..+..+ ..|.-++.-+... ..+++...+.+-.+++|+|..-
T Consensus 40 Lk~GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~af~Dp~i~aI~~~rG 118 (371)
T 3tla_A 40 LAVGDTIGFFSSSAPATVTAKNRFFRGVEFLQRKGFKLVSGKLTGKTDFYRSGTIKERAQEFNELVYNPDITCIMSTIG 118 (371)
T ss_dssp CCTTCEEEEECSSCCHHHHTHHHHHHHHHHHHHTTCEEEECTTTTCCBTTBSSCHHHHHHHHHHHHTCTTEEEEEESCC
T ss_pred CCCcCEEEEEeCCCCccccCHHHHHHHHHHHHhCCCEEEECCchhcccCccCCCHHHHHHHHHHHhhCCCCCEEEEccc
Confidence 8999999999998742 222223333 3677766543221 2356777788888999999854
No 100
>2zbc_A 83AA long hypothetical transcriptional regulator; SARD; 1.90A {Sulfolobus tokodaii}
Probab=30.70 E-value=1.3e+02 Score=20.44 Aligned_cols=46 Identities=20% Similarity=0.160 Sum_probs=30.9
Q ss_pred hHHHHHhhhcCCcceeeeeEEeeCCCCCCCceEEEEEEecCCCCCCcHHHHHHHHHHHH
Q 010344 408 SVEIERVCDGADESILETAAISVSPAGGGPEVLVICVVLKKGFTSQPVDKLKMIFSKAI 466 (512)
Q Consensus 408 ~~~iE~~l~~~~~~v~~~~v~~~~~~~~~~~~~~a~v~~~~~~~~~~~~~l~~~~~~~~ 466 (512)
..++++.|. ..|.|.+|..+..+ ....+.+.. .+.+++.+.+.+.+
T Consensus 15 ~~~~~~~l~-~~peV~~~~~vtG~------~d~l~~v~~------~d~~~l~~~~~~~l 60 (83)
T 2zbc_A 15 EDEVFERLK-SMSEVTEVHVVYGV------YDIVVKVEA------DSMDKLKDFVTNTI 60 (83)
T ss_dssp HHHHHHHHT-TCTTEEEEEECSSS------CSEEEEEEC------SSHHHHHHHHHHTG
T ss_pred HHHHHHHHh-CCCCeEEEEEEecc------CCEEEEEEE------CCHHHHHHHHHHHh
Confidence 368889997 89999999876443 345555555 45566666665444
No 101
>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*
Probab=30.46 E-value=1.1e+02 Score=28.17 Aligned_cols=59 Identities=14% Similarity=0.113 Sum_probs=41.4
Q ss_pred CCCCCEEEEEcCC--CHHHHHHHHHHHHhcceEeecCCCcCHH-----------------------HHHHHHHhcCccEE
Q 010344 14 FSKGDAIAIDMPM--TVHAVIIYLAIILAGYVVVSIADSFAAR-----------------------EIATRLRVSKAKGI 68 (512)
Q Consensus 14 i~~gd~V~i~~~n--~~~~~~~~lA~~~~G~~~v~l~~~~~~~-----------------------~l~~~l~~~~~~~i 68 (512)
+.++|++..+++- +.-.+...++++..|+.+++. .+.+. .+...+++.++.++
T Consensus 132 ~~~~d~~l~~~p~g~~~~g~~~~~~~~~~G~~v~~~--~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l 209 (369)
T 3hgu_A 132 GRPSGNTLAAIPTGPHIVGAINKERALRLGGMFFSI--DIDPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQDIRFL 209 (369)
T ss_dssp TCCCCEEEECSCCTTCHHHHHHHHHHHHTTSCEECC--CCCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCEEEE
T ss_pred CCCcceEEEecCCCchhhhHHHHHHHHHcCCEEECc--cCChHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhCCCCEE
Confidence 7899999999886 333344455558889966554 33444 66668889999988
Q ss_pred Eeccch
Q 010344 69 FTQDFI 74 (512)
Q Consensus 69 v~~~~~ 74 (512)
+.....
T Consensus 210 ~~~Ps~ 215 (369)
T 3hgu_A 210 VTTPPV 215 (369)
T ss_dssp EECHHH
T ss_pred EeCHHH
Confidence 887653
No 102
>2zzt_A Putative uncharacterized protein; cation diffusion facilitator (CDF), transporter, zinc, membrane protein, cytosolic domain; 2.84A {Thermotoga maritima}
Probab=30.31 E-value=1.6e+02 Score=21.49 Aligned_cols=63 Identities=8% Similarity=0.114 Sum_probs=39.1
Q ss_pred chHHHHHhhhcCCcceeeeeEEeeCCCCCCCceEEEEEEecCCCCCCcHHHHHHHHHHHHHhccC
Q 010344 407 SSVEIERVCDGADESILETAAISVSPAGGGPEVLVICVVLKKGFTSQPVDKLKMIFSKAIQRNLN 471 (512)
Q Consensus 407 ~~~~iE~~l~~~~~~v~~~~v~~~~~~~~~~~~~~a~v~~~~~~~~~~~~~l~~~~~~~~~~~l~ 471 (512)
....|++.+. +.|+|.++-=+-....... -.+.+-|++.+...-....++.+.+.+.|.+.++
T Consensus 11 ~~~~I~~~l~-~~~gV~~vh~lr~r~~G~~-~~v~~hI~v~~~~sv~eah~i~~~ie~~L~~~~~ 73 (107)
T 2zzt_A 11 MYDDIFAVLE-RFPNVHNPHRVRIRRVGTK-YFIEMDIEVDGKMSVKDAHELTVKIRKEMLKRRD 73 (107)
T ss_dssp HHHHHHHHHT-TCSSCEEEEEEEEECSCC--CEEEEEEEECTTSCHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHH-cCCCccccEEEEEEEECCc-EEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 3467888887 8999887755545443222 4666777776543201234677788777776554
No 103
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*
Probab=30.31 E-value=67 Score=31.44 Aligned_cols=78 Identities=13% Similarity=-0.024 Sum_probs=57.2
Q ss_pred EEecCchhHHHHHHhhcc----ccccCCcEEEecCCccchhhhHHHHhhhccCceEEEecCCCchhhHHHHHHhcCceEE
Q 010344 158 IPWTQLSPIRCAAEAWGH----IDMKVGDVYCWPTNLGWVMGPIILFSSFLSGAALALYHGSPLERSFGKFVQDSGVSVL 233 (512)
Q Consensus 158 v~~s~~~~~~~~~~~~~~----~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~l~~~~~t~l 233 (512)
-.+|.+.+...+...... .+..+++++....+-+.. ....+++++..|+..+.++.....+++...+++.++..+
T Consensus 25 ~~~Ty~eL~~~~~~~A~~L~~~~~~~~g~~V~i~~~n~~~-~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~l 103 (511)
T 3e7w_A 25 QSLTYQELWEQSDRAAAAIQKRISGEKKSPILVYGHMEPH-MIVSFLGSVKAGHPYIPVDLSIPSERIAKIIESSGAELL 103 (511)
T ss_dssp EEEEHHHHHHHHHHHHHHHTTTSCSSSCCCEEEEESSCHH-HHHHHHHHHHHTCCEEEEETTSCHHHHHHHHHHHTCCEE
T ss_pred ceeeHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEecCCHH-HHHHHHHHHHhCCEEEecCCCChHHHHHHHHHhCCCCEE
Confidence 357888876655544433 355677887766554322 234478999999999999888888999999999999998
Q ss_pred ecc
Q 010344 234 GTV 236 (512)
Q Consensus 234 ~~~ 236 (512)
+..
T Consensus 104 i~~ 106 (511)
T 3e7w_A 104 IHA 106 (511)
T ss_dssp EES
T ss_pred Eec
Confidence 863
No 104
>3kki_A CAI-1 autoinducer synthase; quorum sensing, CQSA, P virulence, acyltransferase, aminotransferase, pyridoxal PHO transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB: 3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A
Probab=29.88 E-value=3.2e+02 Score=25.30 Aligned_cols=57 Identities=7% Similarity=-0.034 Sum_probs=42.1
Q ss_pred CCCCCEEEEEcCCCHHHHHHHHHHHHhcceEeecCCCcCHHHHHHHHHhcCccEEEeccch
Q 010344 14 FSKGDAIAIDMPMTVHAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFI 74 (512)
Q Consensus 14 i~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~iv~~~~~ 74 (512)
+++||.|.+--+....+. -++...|+.+++++. ...+++...++..++++|++....
T Consensus 140 ~~~gd~Vl~~~~~~~~~~---~~~~~~g~~~~~~~~-~d~~~le~~l~~~~~~~vi~~~~~ 196 (409)
T 3kki_A 140 CQPNTNVYIDFFAHMSLW---EGARYANAQAHPFMH-NNCDHLRMLIQRHGPGIIVVDSIY 196 (409)
T ss_dssp CCTTCEEEEETTSCHHHH---HHHHHTTCEEEEECT-TCHHHHHHHHHHHCSCEEEEESBC
T ss_pred cCCCCEEEECCCcCHHHH---HHHHHcCCeEEEecC-CCHHHHHHHHHhcCCeEEEECCCC
Confidence 899999988777665543 455667888887754 567888888887777888877543
No 105
>1y7l_A O-acetylserine sulfhydrylase, O-acetylserine (thiol)-lyase; X-RAY crystallography, sulfhydrylase; HET: LLP; 1.55A {Haemophilus influenzae} SCOP: c.79.1.1 PDB: 3iqg_X* 3iqh_X* 3iqi_X* 1fcj_A* 1oas_A* 1d6s_A*
Probab=29.11 E-value=1.7e+02 Score=26.29 Aligned_cols=58 Identities=14% Similarity=0.097 Sum_probs=41.0
Q ss_pred CCCCCEEEEEcCCCHHHHHHHHHHHHhcceEeecCCCcCHHHHHHHHHhcCccEEEecc
Q 010344 14 FSKGDAIAIDMPMTVHAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQD 72 (512)
Q Consensus 14 i~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~iv~~~ 72 (512)
+++|+.|... ..+-.-..+.+++.+.|.-++.+-|...+..-...++..++++++++.
T Consensus 59 ~~~~~~vv~~-ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~v~~~~~ 116 (316)
T 1y7l_A 59 LTKGKEIVDA-TSGNTGIALAYVAAARGYKITLTMPETMSLERKRLLCGLGVNLVLTEG 116 (316)
T ss_dssp SCTTCEEEES-CCSHHHHHHHHHHHHHTCCEEEEEETTSCHHHHHHHHHTTCEEEEECG
T ss_pred CCCCCEEEEe-CCcHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHcCCEEEEeCC
Confidence 5667665554 456666667777788898776655554455566788889999999876
No 106
>2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A*
Probab=28.98 E-value=2.4e+02 Score=25.56 Aligned_cols=57 Identities=11% Similarity=0.062 Sum_probs=38.5
Q ss_pred CCCCCEEEEEcCCCHHHHHHHHHHHHhcceEeecC--CC----cCHHHHHHHHHh----cCccEEEeccc
Q 010344 14 FSKGDAIAIDMPMTVHAVIIYLAIILAGYVVVSIA--DS----FAAREIATRLRV----SKAKGIFTQDF 73 (512)
Q Consensus 14 i~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~--~~----~~~~~l~~~l~~----~~~~~iv~~~~ 73 (512)
+++||.|.+..+....+... +...|+.++.++ .+ ...+++...++. -++++|+....
T Consensus 90 ~~~gd~vl~~~~~~~~~~~~---~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~v~~~~~ 156 (371)
T 2e7j_A 90 AKKDAWVVMDENCHYSSYVA---AERAGLNIALVPKTDYPDYAITPENFAQTIEETKKRGEVVLALITYP 156 (371)
T ss_dssp CCTTCEEEEETTCCHHHHHH---HHHTTCEEEEECCCCTTTCCCCHHHHHHHHHHHTTTSCEEEEEEESS
T ss_pred hCCCCEEEEccCcchHHHHH---HHHcCCeEEEeecccCCCCCcCHHHHHHHHHhhcccCCeEEEEEECC
Confidence 78899998887777665544 566777766665 22 367888888875 35666666543
No 107
>3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987}
Probab=27.50 E-value=1.6e+02 Score=27.32 Aligned_cols=64 Identities=14% Similarity=-0.002 Sum_probs=41.9
Q ss_pred HHHHHHhcc-CCCCCEEEEEcCCCHHHHHHHHHHHHhcceEeecCC-----CcCHHHHHHHHHhcC--ccEEEec
Q 010344 5 LVANALDTM-FSKGDAIAIDMPMTVHAVIIYLAIILAGYVVVSIAD-----SFAAREIATRLRVSK--AKGIFTQ 71 (512)
Q Consensus 5 ~~a~~L~~~-i~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~-----~~~~~~l~~~l~~~~--~~~iv~~ 71 (512)
.+...|... +++||.|.+-.+....+. -++...|+.++.++. ....+.+...+..-+ +++|+..
T Consensus 65 al~~al~~l~~~~Gd~Vi~~~~~~~~~~---~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~tk~v~~~ 136 (377)
T 3ju7_A 65 GLMAAIQLKKRKKGKYALMPSFTFPATP---LAAIWCGLEPYFIDISIDDWYMDKTVLWDKIEELKEEVAIVVPY 136 (377)
T ss_dssp HHHHHHHHHSCTTCCEEEEESSSCTHHH---HHHHHTTCEEEEECBCTTTCSBCHHHHHHHHHHHGGGEEEECCB
T ss_pred HHHHHHHHcCCCCcCEEEECCCCcHHHH---HHHHHcCCEEEEEecCCccCCcCHHHHHHHHhcCCCCceEEEEE
Confidence 444556666 899999988877766543 345677887665543 246788888774434 6777644
No 108
>3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A*
Probab=27.26 E-value=2.4e+02 Score=29.01 Aligned_cols=56 Identities=16% Similarity=0.223 Sum_probs=41.5
Q ss_pred CCCCCEEEEEcCCCHHHHHHHHHHHHhcceEeecCCCc--------------CHHHHHHHHHhc-Ccc----EEEecc
Q 010344 14 FSKGDAIAIDMPMTVHAVIIYLAIILAGYVVVSIADSF--------------AAREIATRLRVS-KAK----GIFTQD 72 (512)
Q Consensus 14 i~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~--------------~~~~l~~~l~~~-~~~----~iv~~~ 72 (512)
+++||.|.+--+++....- |+...|+.++.+++.. +.+.+...++.. +.+ +++++.
T Consensus 232 ~~pGD~VLv~r~~H~S~~~---~l~lsGa~pv~v~~~~~~~gi~~~i~~~~~d~e~Le~~l~~~~~~k~p~~vivt~p 306 (715)
T 3n75_A 232 APAGSTILIDRNCHKSLTH---LMMMSDVTPIYFRPTRNAYGILGGIPQSEFQHATIAKRVKETPNATWPVHAVITNS 306 (715)
T ss_dssp CCTTCEEEEESSCCHHHHH---HHHHSCCEEEEECCCBCTTCCBCCCCGGGGSHHHHHHHHHHSTTCCSCSEEEEESS
T ss_pred CCCCCEEEECCCccHHHHH---HHHHcCCEEEEEeccccccccccCcccccCCHHHHHHHHhhCcCccCceEEEEECC
Confidence 8999999998888776553 6778999998887542 578888888764 333 555554
No 109
>1elu_A L-cysteine/L-cystine C-S lyase; FES cluster biosynthesis, pyridoxal 5'-phosphate, thiocystei aminoacrylate, enzyme-product complex; HET: PDA; 1.55A {Synechocystis SP} SCOP: c.67.1.3 PDB: 1elq_A* 1n2t_A* 1n31_A*
Probab=27.14 E-value=1.6e+02 Score=27.07 Aligned_cols=67 Identities=18% Similarity=0.097 Sum_probs=39.0
Q ss_pred HHHHHhcc-CCCCCEEEEEcCCCHHHHHHHHH-HHHhcceEeecCCC------cCHHHHHHHHHhcCccEEEeccc
Q 010344 6 VANALDTM-FSKGDAIAIDMPMTVHAVIIYLA-IILAGYVVVSIADS------FAAREIATRLRVSKAKGIFTQDF 73 (512)
Q Consensus 6 ~a~~L~~~-i~~gd~V~i~~~n~~~~~~~~lA-~~~~G~~~v~l~~~------~~~~~l~~~l~~~~~~~iv~~~~ 73 (512)
+...++.. +++||.|.+..+....+...+.. +...|+.++.++.. ...+.+...++. ++++|+....
T Consensus 89 ~~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~-~~~~v~~~~~ 163 (390)
T 1elu_A 89 CDIVLWGLDWHQGDEILLTDCEHPGIIAIVQAIAARFGITYRFFPVAATLNQGDAAAVLANHLGP-KTRLVILSHL 163 (390)
T ss_dssp HHHHHHHSCCCTTCEEEEETTCCHHHHHHHHHHHHHHCCEEEEECCGGGSSSSCHHHHHHTTCCT-TEEEEEEESB
T ss_pred HHHHHhCCCCCCCCEEEEecCcccHHHHHHHHHHHHhCcEEEEEcCCCCCCccchHHHHHHhcCC-CceEEEEecc
Confidence 33444444 68899998888877776654433 23457666555432 234555555543 5666666543
No 110
>1ve1_A O-acetylserine sulfhydrylase; PLP, transferase, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.45A {Thermus thermophilus} SCOP: c.79.1.1 PDB: 2eco_A* 2ecq_A* 2efy_A*
Probab=26.73 E-value=2.5e+02 Score=25.10 Aligned_cols=59 Identities=14% Similarity=0.098 Sum_probs=40.9
Q ss_pred CCCCC--EEEEEcCCCHHHHHHHHHHHHhcceEeecCCCcCHHHHHHHHHhcCccEEEeccc
Q 010344 14 FSKGD--AIAIDMPMTVHAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDF 73 (512)
Q Consensus 14 i~~gd--~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~iv~~~~ 73 (512)
+++|+ .|.. ...+-.-..+.+++.+.|.-++.+-|...+..-...++..++++++++..
T Consensus 57 ~~~g~~~~vv~-assGN~g~a~A~~a~~~G~~~~i~~p~~~~~~k~~~~~~~Ga~V~~~~~~ 117 (304)
T 1ve1_A 57 LRPGSGQVIVE-PTSGNTGIGLAMIAASRGYRLILTMPAQMSEERKRVLKAFGAELVLTDPE 117 (304)
T ss_dssp CCTTSCCEEEE-SCCSHHHHHHHHHHHHHTCEEEEEEETTCCHHHHHHHHHTTCEEEEECTT
T ss_pred CCCCCccEEEE-eCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEECCC
Confidence 66666 4444 45566666677778889987766555444455667788899999998763
No 111
>4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A*
Probab=26.18 E-value=1.2e+02 Score=27.60 Aligned_cols=61 Identities=15% Similarity=0.044 Sum_probs=42.3
Q ss_pred HHhcc-CCCCCEEEEEcCCCHHHHHHHHHHHHhcceEeecCCCcCHHHHHHHHHhcCccEEEecc
Q 010344 9 ALDTM-FSKGDAIAIDMPMTVHAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQD 72 (512)
Q Consensus 9 ~L~~~-i~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~iv~~~ 72 (512)
.+... +++||+|+|+..-+.-..++++|....|+.++.++.+ ++. ..+....++..++-..
T Consensus 155 ~l~~~~~~~g~~VlV~GaG~~g~~a~~~a~~~~g~~Vi~~~~~--~~r-~~~~~~~Ga~~~i~~~ 216 (348)
T 4eez_A 155 AIKVSGVKPGDWQVIFGAGGLGNLAIQYAKNVFGAKVIAVDIN--QDK-LNLAKKIGADVTINSG 216 (348)
T ss_dssp HHHHHTCCTTCEEEEECCSHHHHHHHHHHHHTSCCEEEEEESC--HHH-HHHHHHTTCSEEEEC-
T ss_pred eecccCCCCCCEEEEEcCCCccHHHHHHHHHhCCCEEEEEECc--HHH-hhhhhhcCCeEEEeCC
Confidence 34445 9999999999987777777777776667766655432 333 4567778888776543
No 112
>1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A 1o61_A*
Probab=26.14 E-value=3.2e+02 Score=25.20 Aligned_cols=65 Identities=14% Similarity=0.086 Sum_probs=42.5
Q ss_pred HHHHHHhcc-CCCCCEEEEEcCCCHHHHHHHHHHHHhcceEeecCCC----cCHHHHHHHHHhc--CccEEEecc
Q 010344 5 LVANALDTM-FSKGDAIAIDMPMTVHAVIIYLAIILAGYVVVSIADS----FAAREIATRLRVS--KAKGIFTQD 72 (512)
Q Consensus 5 ~~a~~L~~~-i~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~----~~~~~l~~~l~~~--~~~~iv~~~ 72 (512)
.+...++.. +++||.|.+..+....+.. ++...|+.++.++.. ...+++...++.. ++++|+...
T Consensus 59 al~~~~~~l~~~~gd~Vl~~~~~~~~~~~---~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~~~v~~~~ 130 (394)
T 1o69_A 59 ALHLALRVAGVKQDDIVLASSFTFIASVA---PICYLKAKPVFIDCDETYNIDVDLLKLAIKECEKKPKALILTH 130 (394)
T ss_dssp HHHHHHHHTTCCTTCEEEEESSSCGGGTH---HHHHTTCEEEEECBCTTSSBCHHHHHHHHHHCSSCCCEEEEEC
T ss_pred HHHHHHHHcCCCCCCEEEECCCccHHHHH---HHHHcCCEEEEEEeCCCCCcCHHHHHHHHhcccCCceEEEEEC
Confidence 344445555 7899999988887766543 334468776665532 4678888888764 567666554
No 113
>1yj7_A ESCJ; mixed alpha/beta, extended linker, protein transport; 1.80A {Escherichia coli}
Probab=26.09 E-value=1.7e+02 Score=23.80 Aligned_cols=71 Identities=8% Similarity=0.178 Sum_probs=44.1
Q ss_pred hHHHHHhhhcCCcceeeeeEEeeCCCCCCCceEE--EEEEecCCCCCCcHHHHHHHHHHHHHhccCCccceeeEEEecC
Q 010344 408 SVEIERVCDGADESILETAAISVSPAGGGPEVLV--ICVVLKKGFTSQPVDKLKMIFSKAIQRNLNPLFKVSLVKIVLE 484 (512)
Q Consensus 408 ~~~iE~~l~~~~~~v~~~~v~~~~~~~~~~~~~~--a~v~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~p~~i~~~~~ 484 (512)
-.|+++.|. ..++|..+-|...-..... ..+. +++.++++.. ++.... .|+..+..-++. ..|..|.++|.
T Consensus 92 egELartI~-~i~~V~~ARVhl~lP~~~~-~~~sASV~l~~~~g~~-l~~~q~--~I~~LVa~SV~g-L~~enVtVvdq 164 (171)
T 1yj7_A 92 EQDIERLLS-KIPGVIDCSVSLNVNNNES-QPSSAAVLVISSPEVN-LAPSVI--QIKNLVKNSVDD-LKLENISVVIK 164 (171)
T ss_dssp HHHHHHHHT-TSTTEEEEEEEEEC--------CEEEEEEEECTTCC-CGGGHH--HHHHHHHHHSTT-CCGGGEEEEEE
T ss_pred HHHHHHHHH-cCCCeeEEEEEEECCCCCC-CCceEEEEEEeCCCCC-CcHhHH--HHHHHHHHhcCC-CCcccEEEEeC
Confidence 468999998 8999999988665443332 3344 4445555655 665542 477777666655 66777877764
No 114
>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A*
Probab=26.09 E-value=1.9e+02 Score=28.48 Aligned_cols=65 Identities=20% Similarity=0.155 Sum_probs=46.8
Q ss_pred HHHHhcc-CCCCCEEEEEcCCCHHHHHHHHHHHHhcceEeecCCCcCHHHHHHHHHhcCccEEEecc
Q 010344 7 ANALDTM-FSKGDAIAIDMPMTVHAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQD 72 (512)
Q Consensus 7 a~~L~~~-i~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~iv~~~ 72 (512)
..+..+- +++|+.|.. ...+-.-..+.++|...|.-++.+-|...+..-...++..+++++++..
T Consensus 102 ~~a~~~g~~~~g~~vv~-~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~v~~~~~ 167 (527)
T 3pc3_A 102 QDAEEQGLLKPGYTIIE-PTSGNTGIGLAMACAVKGYKCIIVMPEKMSNEKVSALRTLGAKIIRTPT 167 (527)
T ss_dssp HHHHHHTCCCTTCEEEE-ECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECT
T ss_pred HHHHHcCCCCCCCEEEE-eCCCHHHHHHHHHHHHhCCeEEEEEcCCCCHHHHHHHHHCCCEEEEeCC
Confidence 3333344 788887755 5566666777778888898876665655556667888999999999875
No 115
>3kax_A Aminotransferase, classes I and II; PLP, C-S lyase, transf structural genomics, center for structural genomics of INFE diseases, csgid; HET: LLP MSE PLP; 1.70A {Bacillus anthracis str} PDB: 3t32_A*
Probab=25.67 E-value=2.4e+02 Score=25.78 Aligned_cols=55 Identities=4% Similarity=0.022 Sum_probs=35.2
Q ss_pred CCCCCEEEEEcCCCHHHHHHHHHHHHhcceEeecCCC-------cCHHHHHHHHHhcCccEEEecc
Q 010344 14 FSKGDAIAIDMPMTVHAVIIYLAIILAGYVVVSIADS-------FAAREIATRLRVSKAKGIFTQD 72 (512)
Q Consensus 14 i~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~-------~~~~~l~~~l~~~~~~~iv~~~ 72 (512)
+++||.|.+..+....+. .++...|+.++.++.. ...+++...+ ..++++|+...
T Consensus 103 ~~~gd~vl~~~~~~~~~~---~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~l-~~~~~~v~i~~ 164 (383)
T 3kax_A 103 TKENESVLVQPPIYPPFF---EMVTTNNRQLCVSPLQKQNDTYAIDFEHLEKQF-QQGVKLMLLCS 164 (383)
T ss_dssp CCTTCEEEECSSCCHHHH---HHHHHTTCEEEECCCEEETTEEECCHHHHHHHH-TTTCCEEEEES
T ss_pred CCCCCEEEEcCCCcHHHH---HHHHHcCCEEEeccceecCCcEEEcHHHHHHHh-CcCCeEEEEeC
Confidence 778888887777665544 3455667776666532 4677777777 44666665543
No 116
>2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway, transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP: c.67.1.3 PDB: 2ch2_A*
Probab=25.45 E-value=2.2e+02 Score=26.15 Aligned_cols=58 Identities=17% Similarity=0.192 Sum_probs=36.8
Q ss_pred CCCCCEEEEEcCCCHHHHHHHHHHHHhcceEeecC--C--CcCHHHHHHHHHhcCccEEEecc
Q 010344 14 FSKGDAIAIDMPMTVHAVIIYLAIILAGYVVVSIA--D--SFAAREIATRLRVSKAKGIFTQD 72 (512)
Q Consensus 14 i~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~--~--~~~~~~l~~~l~~~~~~~iv~~~ 72 (512)
+++||.|.+..+....+. ..-++...|+.++.++ + ....+++...++..++++|+...
T Consensus 90 ~~~gd~vl~~~~~~~~~~-~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~v~~~~ 151 (396)
T 2ch1_A 90 LEEGDRVLIAVNGIWAER-AVEMSERYGADVRTIEGPPDRPFSLETLARAIELHQPKCLFLTH 151 (396)
T ss_dssp CCTTCEEEEEESSHHHHH-HHHHHHHTTCEEEEEECCTTSCCCHHHHHHHHHHHCCSEEEEES
T ss_pred cCCCCeEEEEcCCcccHH-HHHHHHHcCCceEEecCCCCCCCCHHHHHHHHHhCCCCEEEEEC
Confidence 788998888877666542 1124455676655443 3 25677888888765667776653
No 117
>3t18_A Aminotransferase class I and II; PSI-biology, MCSG, midwest center for structural genomics, P 5'-phosphate binding; HET: PLP; 2.86A {Anaerococcus prevotii} PDB: 4emy_A*
Probab=25.44 E-value=2.5e+02 Score=26.14 Aligned_cols=55 Identities=7% Similarity=-0.021 Sum_probs=36.7
Q ss_pred CCCCCEEEEEcCCCHHHHHHHHHHHHhcceEeecCC-----CcCHHHHHHHHHhc---Ccc-EEEec
Q 010344 14 FSKGDAIAIDMPMTVHAVIIYLAIILAGYVVVSIAD-----SFAAREIATRLRVS---KAK-GIFTQ 71 (512)
Q Consensus 14 i~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~-----~~~~~~l~~~l~~~---~~~-~iv~~ 71 (512)
+++||.|.+..|....+.- ++...|+.++.++. ....+.+...++.. +.+ +++..
T Consensus 122 ~~~gd~Vl~~~p~~~~~~~---~~~~~g~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~vi~~ 185 (413)
T 3t18_A 122 LDEGDPLICHDYYWAPYRK---ICEEFGRNFKTFEFFTDDFAFNIDVYKEAIDEGIRDSDRIASLIN 185 (413)
T ss_dssp CCSSCEEEEESSCCTHHHH---HHHHHTCEEEEECCBCTTSSBCHHHHHHHHHHHHHHCSEEEEEEE
T ss_pred cCCCCEEEECCCCcccHHH---HHHHhCCeEEEeeccCCCCCcCHHHHHHHHHHHhhcCCCEEEEEe
Confidence 8899999988886665543 34556776666543 45678888888763 555 45544
No 118
>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii}
Probab=25.10 E-value=2.2e+02 Score=25.56 Aligned_cols=59 Identities=25% Similarity=0.294 Sum_probs=40.1
Q ss_pred HHhcc-CCCCCEEEEEc-CCCHHHHHHHHHHHHhcceEeecCCCcCHHHHHHHHHhcCccEEEecc
Q 010344 9 ALDTM-FSKGDAIAIDM-PMTVHAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQD 72 (512)
Q Consensus 9 ~L~~~-i~~gd~V~i~~-~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~iv~~~ 72 (512)
.|... +++|++|+|+. .-.+-..++.+|- ..|+..+.+. +.++ ..++++.++..++...
T Consensus 144 al~~~~~~~g~~vlV~Ga~G~vG~~a~q~a~-~~Ga~vi~~~---~~~~-~~~~~~lGa~~~i~~~ 204 (321)
T 3tqh_A 144 ALNQAEVKQGDVVLIHAGAGGVGHLAIQLAK-QKGTTVITTA---SKRN-HAFLKALGAEQCINYH 204 (321)
T ss_dssp HHHHTTCCTTCEEEESSTTSHHHHHHHHHHH-HTTCEEEEEE---CHHH-HHHHHHHTCSEEEETT
T ss_pred HHHhcCCCCCCEEEEEcCCcHHHHHHHHHHH-HcCCEEEEEe---ccch-HHHHHHcCCCEEEeCC
Confidence 34444 99999999997 5556666666665 5688766553 4455 5667788888766543
No 119
>2djw_A Probable transcriptional regulator, ASNC family; structural genomics, thermus thermophilus HB8, NPPSFA; 2.40A {Thermus thermophilus}
Probab=24.69 E-value=1e+02 Score=21.68 Aligned_cols=33 Identities=18% Similarity=0.088 Sum_probs=24.1
Q ss_pred hHHHHHhhhcCCcceeeeeEEeeCCCCCCCceEEEEEEec
Q 010344 408 SVEIERVCDGADESILETAAISVSPAGGGPEVLVICVVLK 447 (512)
Q Consensus 408 ~~~iE~~l~~~~~~v~~~~v~~~~~~~~~~~~~~a~v~~~ 447 (512)
..++++.|. +.|+|.+|..+..+ ....+.+..+
T Consensus 15 ~~~~~~~l~-~~peV~~~~~vtG~------~D~ll~v~~~ 47 (92)
T 2djw_A 15 VQALGEAIA-ELPQVAEVYSVTGP------YDLVALVRLK 47 (92)
T ss_dssp HHHHHHHHT-TSTTEEEEEEESSS------SSEEEEEEES
T ss_pred HHHHHHHHh-cCCCeEEEEEeecC------CCEEEEEEEC
Confidence 578889997 89999999877543 3455556653
No 120
>4dq6_A Putative pyridoxal phosphate-dependent transferas; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.50A {Clostridium difficile} PDB: 4dgt_A*
Probab=24.37 E-value=1.7e+02 Score=26.93 Aligned_cols=54 Identities=11% Similarity=0.070 Sum_probs=33.4
Q ss_pred CCCCCEEEEEcCCCHHHHHHHHHHHHhcceEeecCCC--------cCHHHHHHHHHhcCccEEEecc
Q 010344 14 FSKGDAIAIDMPMTVHAVIIYLAIILAGYVVVSIADS--------FAAREIATRLRVSKAKGIFTQD 72 (512)
Q Consensus 14 i~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~--------~~~~~l~~~l~~~~~~~iv~~~ 72 (512)
+++||.|.+..+....+.. ++...|+.++.++.. ...+++...++. +++|+...
T Consensus 111 ~~~gd~vl~~~~~~~~~~~---~~~~~g~~~~~~~~~~~~~~~~~~d~~~l~~~l~~--~~~v~i~~ 172 (391)
T 4dq6_A 111 TKANDKIMIQEPVYSPFNS---VVKNNNRELIISPLQKLENGNYIMDYEDIENKIKD--VKLFILCN 172 (391)
T ss_dssp SCTTCEEEECSSCCTHHHH---HHHHTTCEEEECCCEECTTSCEECCHHHHHHHCTT--EEEEEEES
T ss_pred CCCCCEEEEcCCCCHHHHH---HHHHcCCeEEeeeeeecCCCceEeeHHHHHHHhhc--CCEEEEEC
Confidence 6788887776666555432 444567766655443 466777777766 66555443
No 121
>1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C-TER domain, open alpha-beta structure., transferase; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3
Probab=23.99 E-value=2.3e+02 Score=26.01 Aligned_cols=55 Identities=16% Similarity=0.102 Sum_probs=34.0
Q ss_pred CCCCCEEEEEcCCCHHHHHHHHHHHHhcceEeecCC--C-----cCHHHHHHHHHhcCccEEEec
Q 010344 14 FSKGDAIAIDMPMTVHAVIIYLAIILAGYVVVSIAD--S-----FAAREIATRLRVSKAKGIFTQ 71 (512)
Q Consensus 14 i~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~--~-----~~~~~l~~~l~~~~~~~iv~~ 71 (512)
.++||.|.+.-+....+.. ++...|+.++.++. . ...+++...++..++++|+..
T Consensus 108 ~~~gd~vl~~~p~y~~~~~---~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~~~~~~v~l~ 169 (390)
T 1d2f_A 108 SETGEGVVIHTPAYDAFYK---AIEGNQRTVMPVALEKQADGWFCDMGKLEAVLAKPECKIMLLC 169 (390)
T ss_dssp SCTTCEEEEEESCCHHHHH---HHHHTTCEEEEEECEECSSSEECCHHHHHHHHTSTTEEEEEEE
T ss_pred cCCCCEEEEcCCCcHHHHH---HHHHCCCEEEEeecccCCCccccCHHHHHHHhccCCCeEEEEe
Confidence 6778888887776655442 33456765544432 1 467777777765566766644
No 122
>3ecd_A Serine hydroxymethyltransferase 2; ssgcid, decode, bupsa00008A, one-carbon metabolism, pyridoxa phosphate, structural genomics; 1.60A {Burkholderia pseudomallei}
Probab=23.53 E-value=2e+02 Score=26.72 Aligned_cols=59 Identities=7% Similarity=-0.126 Sum_probs=31.4
Q ss_pred CCCCCEEEEEcCCCHHHHHHHHH--HHHhcceEeec--C---CCcCHHHHHHHHHhcCccEEEecc
Q 010344 14 FSKGDAIAIDMPMTVHAVIIYLA--IILAGYVVVSI--A---DSFAAREIATRLRVSKAKGIFTQD 72 (512)
Q Consensus 14 i~~gd~V~i~~~n~~~~~~~~lA--~~~~G~~~v~l--~---~~~~~~~l~~~l~~~~~~~iv~~~ 72 (512)
+++||.|.+.-+.....+..... ....+...+++ + .....+++...++..++++|+...
T Consensus 115 ~~~gd~Vi~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~v~~~~ 180 (425)
T 3ecd_A 115 AKPGDTVLGMSLDAGGHLTHGAKPALSGKWFNALQYGVSRDTMLIDYDQVEALAQQHKPSLIIAGF 180 (425)
T ss_dssp CCTTCEEEEECC------------------CEEEEECCCTTTSSCCHHHHHHHHHHHCCSEEEEEC
T ss_pred cCCCCEEEEcccccccceecchhhhhcccceeeeecCCCcccCccCHHHHHHHHhhcCCcEEEEcc
Confidence 88999998887765442211111 22233344444 3 245778899988877788887764
No 123
>1e5e_A MGL, methionine gamma-lyase; methionine biosynthesis, PLP-dependent enzymes, C-S gamma lyase; HET: PPJ; 2.18A {Trichomonas vaginalis} SCOP: c.67.1.3 PDB: 1e5f_A*
Probab=23.26 E-value=2.3e+02 Score=26.45 Aligned_cols=57 Identities=16% Similarity=0.208 Sum_probs=35.1
Q ss_pred CCCCCEEEEEcCCCHHHHHHHH-HHHHhcceEeecCCCcCHHHHHHHHHhcCccEEEecc
Q 010344 14 FSKGDAIAIDMPMTVHAVIIYL-AIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQD 72 (512)
Q Consensus 14 i~~gd~V~i~~~n~~~~~~~~l-A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~iv~~~ 72 (512)
+++||.|.+..+....+...+- ++...|+.++.++.. ..+++...++. ++++|+...
T Consensus 98 ~~~gd~Vl~~~~~y~~~~~~~~~~~~~~g~~~~~v~~~-d~~~l~~~i~~-~t~~v~l~~ 155 (404)
T 1e5e_A 98 LKAGDHLISDECLYGCTHALFEHALTKFGIQVDFINTA-IPGEVKKHMKP-NTKIVYFET 155 (404)
T ss_dssp CCTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECTT-STTHHHHHCCT-TEEEEEEES
T ss_pred hCCCCEEEEeCCCchhHHHHHHHHHHHcCCEEEEECCC-CHHHHHHhcCC-CCcEEEEEC
Confidence 7788888887777665544322 355667777666554 44566665543 566666543
No 124
>2a7v_A Serine hydroxymethyltransferase; structural genomics, structural genomics consortium, SGC; 2.04A {Homo sapiens} PDB: 3ou5_A
Probab=23.25 E-value=88 Score=30.55 Aligned_cols=60 Identities=10% Similarity=-0.056 Sum_probs=28.1
Q ss_pred CCCCCEEEEEcCCCHHHHH-----HHHHHHHhcc--eEee--cCC---CcCHHHHHHHHHhcCccEEEeccc
Q 010344 14 FSKGDAIAIDMPMTVHAVI-----IYLAIILAGY--VVVS--IAD---SFAAREIATRLRVSKAKGIFTQDF 73 (512)
Q Consensus 14 i~~gd~V~i~~~n~~~~~~-----~~lA~~~~G~--~~v~--l~~---~~~~~~l~~~l~~~~~~~iv~~~~ 73 (512)
+++||.|.+..+++.-++. ..-++...|. .+++ +++ ....+++...+...++++|++...
T Consensus 141 ~~pGD~Vl~~~~~h~g~l~h~~~~~~~~i~~~g~~~~~~~~~vd~~~~~iD~d~le~~l~~~~~klIi~~~s 212 (490)
T 2a7v_A 141 LQPHDRIMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPYKLNPKTGLIDYNQLALTARLFRPRLIIAGTS 212 (490)
T ss_dssp CCSCEECCC-------------------------------CCBCTTTCSBCHHHHHHHHHHHCCSEEEECCS
T ss_pred cCCCCEecccCccccccccchhhhcchhHHHcCCeEEEEecccccccCCcCHHHHHHHHhhcCCcEEEEcCC
Confidence 8999998877665432211 0012233443 2333 333 467889999988778898887654
No 125
>3cq5_A Histidinol-phosphate aminotransferase; PLP, PMP, amino-acid biosynthesis, histidine biosynthesis, pyridoxal phosphate; HET: PMP; 1.80A {Corynebacterium glutamicum} PDB: 3cq6_A* 3cq4_A
Probab=22.85 E-value=2.7e+02 Score=25.41 Aligned_cols=56 Identities=9% Similarity=-0.000 Sum_probs=36.8
Q ss_pred CCCCCEEEEEcCCCHHHHHHHHHHHHhcceEeecC--C--CcCHHHHHHHHHhcCccEEEecc
Q 010344 14 FSKGDAIAIDMPMTVHAVIIYLAIILAGYVVVSIA--D--SFAAREIATRLRVSKAKGIFTQD 72 (512)
Q Consensus 14 i~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~--~--~~~~~~l~~~l~~~~~~~iv~~~ 72 (512)
.++||.|.+..+....+.- ++...|+.++.++ . ....+++...++..++++|+...
T Consensus 113 ~~~gd~Vl~~~~~y~~~~~---~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~v~~~~ 172 (369)
T 3cq5_A 113 GGPGRTALGFQPSYSMHPI---LAKGTHTEFIAVSRGADFRIDMDVALEEIRAKQPDIVFVTT 172 (369)
T ss_dssp CSTTCEEEEEESSCTHHHH---HHHHTTCEEEEEECCTTSSCCHHHHHHHHHHHCCSEEEEES
T ss_pred cCCCCEEEEcCCChHHHHH---HHHHcCCEEEEecCCcCCCCCHHHHHHHhhccCCCEEEEeC
Confidence 7889998888877665543 4455677655543 3 24567787777765677777643
No 126
>2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A {Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A*
Probab=22.72 E-value=2.3e+02 Score=25.96 Aligned_cols=58 Identities=9% Similarity=-0.059 Sum_probs=32.1
Q ss_pred CCCCCEEEEEcCCCHHHHHHHHHHHHhcceEeec--CCC--cCHHHHHHHHHh-cCccEEEecc
Q 010344 14 FSKGDAIAIDMPMTVHAVIIYLAIILAGYVVVSI--ADS--FAAREIATRLRV-SKAKGIFTQD 72 (512)
Q Consensus 14 i~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l--~~~--~~~~~l~~~l~~-~~~~~iv~~~ 72 (512)
+++||.|.+.-+...... ..-.+...|+.++.+ ++. ...+++...++. -++++|+...
T Consensus 80 ~~~gd~Vl~~~~~~~~~~-~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~~v~~~~ 142 (392)
T 2z9v_A 80 ISPDDVVLNLASGVYGKG-FGYWAKRYSPHLLEIEVPYNEAIDPQAVADMLKAHPEITVVSVCH 142 (392)
T ss_dssp CCTTCCEEEEESSHHHHH-HHHHHHHHCSCEEEEECCTTSCCCHHHHHHHHHHCTTCCEEEEES
T ss_pred cCCCCEEEEecCCcccHH-HHHHHHHcCCceEEeeCCCCCCCCHHHHHHHHhcCCCCcEEEEec
Confidence 678888777766544332 111123346554444 332 466777777764 3566666554
No 127
>3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis}
Probab=22.63 E-value=2.7e+02 Score=25.78 Aligned_cols=58 Identities=14% Similarity=0.063 Sum_probs=31.2
Q ss_pred CCCCCEEEEEcCCCHHHHHHHHHHHHhcceEeecC--CC--cCHHHHHHHHHhcCccEEEecc
Q 010344 14 FSKGDAIAIDMPMTVHAVIIYLAIILAGYVVVSIA--DS--FAAREIATRLRVSKAKGIFTQD 72 (512)
Q Consensus 14 i~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~--~~--~~~~~l~~~l~~~~~~~iv~~~ 72 (512)
+++||.|.+..+...... ..-++...|+.++.++ +. ...+++...++..++++|+...
T Consensus 83 ~~~gd~Vl~~~~~~~~~~-~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~v~~~~ 144 (416)
T 3isl_A 83 IEPEDDVLIPIYGRFGYL-LTEIAERYGANVHMLECEWGTVFDPEDIIREIKKVKPKIVAMVH 144 (416)
T ss_dssp CCTTCEEEEEESSHHHHH-HHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHHHHCCSEEEEES
T ss_pred cCCCCEEEEecCCcccHH-HHHHHHhcCCeeEEEecCCCCCCCHHHHHHHHhhCCCcEEEEEc
Confidence 677777777665443311 2223444565544433 22 2566777777655566665554
No 128
>3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} SCOP: c.67.1.0
Probab=22.50 E-value=2.2e+02 Score=25.84 Aligned_cols=56 Identities=11% Similarity=0.163 Sum_probs=38.7
Q ss_pred CCCCCEEEEEcCCCHHHHHHHHHHHHhcceEeec--CC--CcCHHHHHHHHHhcCccEEEecc
Q 010344 14 FSKGDAIAIDMPMTVHAVIIYLAIILAGYVVVSI--AD--SFAAREIATRLRVSKAKGIFTQD 72 (512)
Q Consensus 14 i~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l--~~--~~~~~~l~~~l~~~~~~~iv~~~ 72 (512)
+++||.|.+..+....+.- ++...|+.++.+ ++ ....+++...++..++++|+...
T Consensus 106 ~~~gd~Vl~~~~~~~~~~~---~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~v~~~~ 165 (367)
T 3euc_A 106 ARPGAKVMAPVPGFVMYAM---SAQFAGLEFVGVPLRADFTLDRGAMLAAMAEHQPAIVYLAY 165 (367)
T ss_dssp CCTTCEEEEEESCSCCSCH---HHHTTTCEEEEEECCTTSCCCHHHHHHHHHHHCCSEEEEES
T ss_pred cCCCCEEEEcCCCHHHHHH---HHHHcCCeEEEecCCCCCCCCHHHHHHHhhccCCCEEEEcC
Confidence 7899999988776654432 344567765544 43 34778899988876788887753
No 129
>1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1
Probab=22.35 E-value=2e+02 Score=26.45 Aligned_cols=60 Identities=12% Similarity=0.078 Sum_probs=40.8
Q ss_pred HHhc--c-CCCCCEEEEEcCCCHHHHHHHHHHHHhcceEeecCCCcCHHHHHHHHHhcCccEEEec
Q 010344 9 ALDT--M-FSKGDAIAIDMPMTVHAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQ 71 (512)
Q Consensus 9 ~L~~--~-i~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~iv~~ 71 (512)
+|.+ . +++|++|+|...-.+-..++.+|-...|+.++.++. +++. ...++..++..++-.
T Consensus 176 al~~~~~~~~~g~~VlV~GaG~vG~~avqlak~~~Ga~Vi~~~~--~~~~-~~~~~~lGa~~vi~~ 238 (359)
T 1h2b_A 176 AVKKAARTLYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDV--KEEK-LKLAERLGADHVVDA 238 (359)
T ss_dssp HHHHHHTTCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEES--SHHH-HHHHHHTTCSEEEET
T ss_pred HHHhhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeC--CHHH-HHHHHHhCCCEEEec
Confidence 4555 7 999999999999666777777776543876555543 3333 344567888877654
No 130
>1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate; HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3 PDB: 1c7o_A*
Probab=22.22 E-value=2.1e+02 Score=26.42 Aligned_cols=55 Identities=13% Similarity=0.103 Sum_probs=30.2
Q ss_pred CCCCCEEEEEcCCCHHHHHHHHHHHHhcceEeecCCC-------cCHHHHHHHHHhcCccEEEec
Q 010344 14 FSKGDAIAIDMPMTVHAVIIYLAIILAGYVVVSIADS-------FAAREIATRLRVSKAKGIFTQ 71 (512)
Q Consensus 14 i~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~-------~~~~~l~~~l~~~~~~~iv~~ 71 (512)
.++||.|.+..+....+. .++...|+.++.++.. ...+.+...+++.++++|+..
T Consensus 110 ~~~gd~vl~~~p~~~~~~---~~~~~~g~~~~~~~~~~~~g~~~~d~~~l~~~l~~~~~~~v~~~ 171 (399)
T 1c7n_A 110 TKPGDGVIIITPVYYPFF---MAIKNQERKIIECELLEKDGYYTIDFQKLEKLSKDKNNKALLFC 171 (399)
T ss_dssp CCTTCEEEECSSCCTHHH---HHHHTTTCEEEECCCEEETTEEECCHHHHHHHHTCTTEEEEEEE
T ss_pred cCCCCEEEEcCCCcHhHH---HHHHHcCCEEEecccccCCCCEEEcHHHHHHHhccCCCcEEEEc
Confidence 566777766655544433 2334456655554432 456666666654456665543
No 131
>3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics center for infectious disease, S mycobacterium, PLP, schiff base; HET: LLP; 1.85A {Mycobacterium tuberculosis}
Probab=22.08 E-value=3.3e+02 Score=25.58 Aligned_cols=57 Identities=12% Similarity=0.191 Sum_probs=36.9
Q ss_pred CCCCCEEEEEcCCCHHHHHHHH-HHHHhcceEeecCCCcCHHHHHHHHHhcCccEEEecc
Q 010344 14 FSKGDAIAIDMPMTVHAVIIYL-AIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQD 72 (512)
Q Consensus 14 i~~gd~V~i~~~n~~~~~~~~l-A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~iv~~~ 72 (512)
+++||.|.+.-+....+...+- .+.+.|+.++.++.. ..+++...++. ++++|+...
T Consensus 117 ~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~g~~~~~v~~~-d~~~l~~ai~~-~t~~v~le~ 174 (414)
T 3ndn_A 117 LGAGDRLVAARSLFGSCFVVCSEILPRWGVQTVFVDGD-DLSQWERALSV-PTQAVFFET 174 (414)
T ss_dssp CCTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECTT-CHHHHHHHTSS-CCSEEEEES
T ss_pred hCCCCEEEEcCCccchHHHHHHHHHHHcCcEEEEeCCC-CHHHHHHhcCC-CCeEEEEEC
Confidence 8899998887776655443332 234577777777554 56777777754 567777654
No 132
>3rq1_A Aminotransferase class I and II; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta structure, cytosol; HET: AKG GOL; 2.20A {Veillonella parvula}
Probab=21.99 E-value=3.3e+02 Score=25.28 Aligned_cols=55 Identities=11% Similarity=0.045 Sum_probs=37.5
Q ss_pred CCCCCEEEEEcCCCHHHHHHHHHHHHhcceEeecCC-----CcCHHHHHHHHHhc---Ccc-EEEec
Q 010344 14 FSKGDAIAIDMPMTVHAVIIYLAIILAGYVVVSIAD-----SFAAREIATRLRVS---KAK-GIFTQ 71 (512)
Q Consensus 14 i~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~-----~~~~~~l~~~l~~~---~~~-~iv~~ 71 (512)
+++||.|.+..|....+.. ++...|+.++.++. ....+.+...++.. +.+ +++..
T Consensus 123 ~~~gd~Vl~~~p~~~~~~~---~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~~~~~~~~~~vi~~ 186 (418)
T 3rq1_A 123 TEPGDEVLTADWYWGAYRV---ICSDTGRTLVTYSLFDEHNNFNHEAFQNRVNELAAKQTNVVVIFN 186 (418)
T ss_dssp SCTTCEEEEESSCCTHHHH---HHHHTTCEEEEECSBCTTSSBCHHHHHHHHHHHHHHCSEEEEEEE
T ss_pred cCCCCEEEECCCCchhHHH---HHHHcCCEEEEEeeeCCCCCcCHHHHHHHHHHhhccCCCEEEEEe
Confidence 8899999988877665543 45667877766643 45678888888763 555 45544
No 133
>2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli}
Probab=21.54 E-value=4.5e+02 Score=27.19 Aligned_cols=47 Identities=15% Similarity=0.222 Sum_probs=34.4
Q ss_pred CCCCCEEEEEcCCCHHHHHHHHHHHHhcceEeecCCC---------c-----CHHHHHHHHHhc
Q 010344 14 FSKGDAIAIDMPMTVHAVIIYLAIILAGYVVVSIADS---------F-----AAREIATRLRVS 63 (512)
Q Consensus 14 i~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~---------~-----~~~~l~~~l~~~ 63 (512)
+++||.|.+.-+.+..+.-. +...|+.++.+++. . ..+.+...++..
T Consensus 242 ~~~GD~Vlv~~~~h~s~~~~---~~~~G~~~v~v~~~~~~~g~~g~i~~~~~d~e~le~~i~~~ 302 (755)
T 2vyc_A 242 MTDNDVVVVDRNCHKSIEQG---LMLTGAKPVYMVPSRNRYGIIGPIYPQEMQPETLQKKISES 302 (755)
T ss_dssp CCTTCEEEEESSCCHHHHHH---HHHHCCEEEEECCCBCTTSCBCCCCGGGGSHHHHHHHHHHC
T ss_pred cCCCCEEEECCCchHHHHHH---HHHcCCEEEEEeCCCCccccccccCcCCCCHHHHHHHHHhC
Confidence 89999999988887665443 55679887776543 2 678888888753
No 134
>2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix B (MTAC); HET: B13; 2.50A {Methanosarcina barkeri}
Probab=21.50 E-value=2e+02 Score=25.10 Aligned_cols=91 Identities=16% Similarity=0.022 Sum_probs=0.0
Q ss_pred cCCcEEEecCCcc--chhhhHH-HHhhhccCceEEEecCCCchhhHHHHHHhcCceEEecch------HHHHHHHccCCC
Q 010344 179 KVGDVYCWPTNLG--WVMGPII-LFSSFLSGAALALYHGSPLERSFGKFVQDSGVSVLGTVP------SLVKAWKNTNCL 249 (512)
Q Consensus 179 ~~~~~~~~~~p~~--~~~~~~~-~~~~l~~G~~~~~~~~~~~~~~~~~~l~~~~~t~l~~~P------~~~~~l~~~~~~ 249 (512)
...-+++...+-. |..|... ....-..|-.++.......++.+.+.+++.++..+..+- ..+..+++....
T Consensus 121 ~~~~~vlla~~~gd~HdiG~~iva~~L~~~G~~Vi~LG~~vp~e~l~~~~~~~~~d~V~lS~l~~~~~~~~~~~i~~l~~ 200 (258)
T 2i2x_B 121 KTKGTVVCHVAEGDVHDIGKNIVTALLRANGYNVVDLGRDVPAEEVLAAVQKEKPIMLTGTALMTTTMYAFKEVNDMLLE 200 (258)
T ss_dssp CCSCEEEEEECTTCCCCHHHHHHHHHHHHTTCEEEEEEEECCSHHHHHHHHHHCCSEEEEECCCTTTTTHHHHHHHHHHT
T ss_pred CCCCeEEEEeCCCCccHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEEeeccCCHHHHHHHHHHHHh
Q ss_pred CCCCcCceeEEEeecCCCCchhhH
Q 010344 250 QGLDWTKIRSFASTGETSNVDDDL 273 (512)
Q Consensus 250 ~~~~l~~l~~i~~~G~~l~~~~~~ 273 (512)
...+ -.+++||...+++..+
T Consensus 201 ~~~~----~~v~vGG~~~~~~~~~ 220 (258)
T 2i2x_B 201 NGIK----IPFACGGGAVNQDFVS 220 (258)
T ss_dssp TTCC----CCEEEESTTCCHHHHH
T ss_pred cCCC----CcEEEECccCCHHHHH
No 135
>3gbx_A Serine hydroxymethyltransferase; structural genomics, IDP01011, serine hydroxymethyltransfera salmonella typhimurium.; HET: MSE; 1.80A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1dfo_A* 3g8m_A* 1eqb_A*
Probab=21.40 E-value=1.9e+02 Score=26.92 Aligned_cols=59 Identities=15% Similarity=0.001 Sum_probs=33.7
Q ss_pred CCCCCEEEEEcCCCHHHHHHHH--HHHHhcceEeec--CC--CcCHHHHHHHHHhcCccEEEecc
Q 010344 14 FSKGDAIAIDMPMTVHAVIIYL--AIILAGYVVVSI--AD--SFAAREIATRLRVSKAKGIFTQD 72 (512)
Q Consensus 14 i~~gd~V~i~~~n~~~~~~~~l--A~~~~G~~~v~l--~~--~~~~~~l~~~l~~~~~~~iv~~~ 72 (512)
+++||.|.+..+....+..... .....+...+++ +. ....+++...++..++++|+...
T Consensus 113 ~~~gd~v~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~v~~~~ 177 (420)
T 3gbx_A 113 LQPGDTVLGMNLAQGGHLTHGSPVNFSGKLYNIVPYGIDESGKIDYDEMAKLAKEHKPKMIIGGF 177 (420)
T ss_dssp CCTTCEEEEEEEC------------CHHHHSEEEEEEECTTCSCCHHHHHHHHHHHCCSEEEECC
T ss_pred cCCCCEEEecchhhcceeccchhhhhcccceeEEeccCCccCCcCHHHHHHHHHhcCCeEEEEec
Confidence 8899999988776654332111 222334444444 32 25778899988887788887754
No 136
>4h27_A L-serine dehydratase/L-threonine deaminase; PLP dependent typeii, PLP binding, liver, lyase; HET: LLP; 1.30A {Homo sapiens} PDB: 1p5j_A* 1pwh_A* 1pwe_A*
Probab=21.13 E-value=1.6e+02 Score=27.31 Aligned_cols=60 Identities=12% Similarity=-0.016 Sum_probs=43.8
Q ss_pred CCCCCEEEEEcCCCHHHHHHHHHHHHhcceEeecCCCcCHHHHHHHHHhcCccEEEeccc
Q 010344 14 FSKGDAIAIDMPMTVHAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDF 73 (512)
Q Consensus 14 i~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~iv~~~~ 73 (512)
..+|....+....+-.-..+.+++.+.|.-++.+-|...+......++..++++++++..
T Consensus 89 ~~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~Vv~v~~~ 148 (364)
T 4h27_A 89 AKQGCAHFVCSSSGNAGMAAAYAARQLGVPATIVVPGTTPALTIERLKNEGATVKVVGEL 148 (364)
T ss_dssp HHTTCCEEEECCSSHHHHHHHHHHHHHTCCEEEEEETTSCHHHHHHHHTTTCEEEEECSS
T ss_pred HhcCCCEEEEeCCChHHHHHHHHHHHhCCceEEEECCCCCHHHHHHHHHcCCEEEEECCC
Confidence 445544445555577777778888888988766656666667788889999999999863
No 137
>2rkb_A Serine dehydratase-like; PLP bound enzyme, enzyme found in human cells, lyase, pyridoxal phosphate; HET: PLP; 2.80A {Homo sapiens}
Probab=21.12 E-value=1.8e+02 Score=26.22 Aligned_cols=57 Identities=12% Similarity=0.004 Sum_probs=40.1
Q ss_pred CCEEEEEcCCCHHHHHHHHHHHHhcceEeecCCCcCHHHHHHHHHhcCccEEEeccc
Q 010344 17 GDAIAIDMPMTVHAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDF 73 (512)
Q Consensus 17 gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~iv~~~~ 73 (512)
|....+....+-.-..+.+++.+.|.-++.+-|...+......++..++++++++..
T Consensus 53 g~~~vv~~ssGN~g~alA~~a~~~G~~~~i~~p~~~~~~k~~~~~~~Ga~V~~~~~~ 109 (318)
T 2rkb_A 53 GCRHLVCSSGGNAGIAAAYAARKLGIPATIVLPESTSLQVVQRLQGEGAEVQLTGKV 109 (318)
T ss_dssp TCCEEEECCCSHHHHHHHHHHHHHTCCEEEEECTTCCHHHHHHHHHTTCEEEECCSS
T ss_pred CCCEEEEECCchHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHhcCCEEEEECCC
Confidence 433344445577777777888889988766655555566677888999999998753
No 138
>2jtq_A Phage shock protein E; solution structure rhodanese, stress response, transferase; NMR {Escherichia coli} PDB: 2jtr_A 2jts_A
Probab=20.99 E-value=2e+02 Score=19.47 Aligned_cols=40 Identities=15% Similarity=0.111 Sum_probs=30.2
Q ss_pred HHHHHHHhcc-CCCCCEEEEEcCCCHHHHHHHHHHHHhcce
Q 010344 4 RLVANALDTM-FSKGDAIAIDMPMTVHAVIIYLAIILAGYV 43 (512)
Q Consensus 4 ~~~a~~L~~~-i~~gd~V~i~~~n~~~~~~~~lA~~~~G~~ 43 (512)
..+...+.+. +.+++.|.++|..+.....+...+...|..
T Consensus 27 ~~l~~~~~~l~~~~~~~ivv~C~~g~rs~~aa~~L~~~G~~ 67 (85)
T 2jtq_A 27 KEVKERIATAVPDKNDTVKVYCNAGRQSGQAKEILSEMGYT 67 (85)
T ss_dssp HHHHHHHHHHCCCTTSEEEEEESSSHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHhCCCCCCcEEEEcCCCchHHHHHHHHHHcCCC
Confidence 3455556556 688899999999988877777777777864
No 139
>1jbq_A B, cystathionine beta-synthase, serine sulfhydrase; fold type II of PLP enzymes, lyase; HET: HEM PLP; 2.60A {Homo sapiens} SCOP: c.79.1.1 PDB: 1m54_A*
Probab=20.93 E-value=3.7e+02 Score=25.61 Aligned_cols=58 Identities=21% Similarity=0.192 Sum_probs=40.0
Q ss_pred CCCCCEEEEEcCCCHHHHHHHHHHHHhcceEeecCCCcCHHHHHHHHHhcCccEEEecc
Q 010344 14 FSKGDAIAIDMPMTVHAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQD 72 (512)
Q Consensus 14 i~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~iv~~~ 72 (512)
+++|+.|+.. ..+-.-..+.+++.+.|.-++.+-|...+.+-..+++..++++++++.
T Consensus 158 l~~g~tVV~a-SsGN~G~AlA~aaa~~Gi~~~IvmP~~~s~~k~~~l~~~GAeVv~v~~ 215 (435)
T 1jbq_A 158 LKPGDTIIEP-TSGNTGIGLALAAAVRGYRCIIVMPEKMSSEKVDVLRALGAEIVRTPT 215 (435)
T ss_dssp SCTTCEEEEE-CSSHHHHHHHHHHHHHTCEEEEEECSCCCHHHHHHHHHTTCEEEECCC
T ss_pred CCCCCEEEEe-CCCHHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHhCCCEEEEecC
Confidence 6777766554 334555556667778888776655554455567788999999999874
No 140
>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*
Probab=20.73 E-value=2.4e+02 Score=25.50 Aligned_cols=61 Identities=15% Similarity=0.070 Sum_probs=42.2
Q ss_pred HHHhcc-CCCCCEEEEEcCCCHHHHHHHHHHHHhcceEeecCCCcCHHHHHHHHHhcCccEEEecc
Q 010344 8 NALDTM-FSKGDAIAIDMPMTVHAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQD 72 (512)
Q Consensus 8 ~~L~~~-i~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~iv~~~ 72 (512)
++|... +++|++|+|.....+-..++.+|-. .|+-++.++. +++.+ ..++..++..++...
T Consensus 157 ~~l~~~~~~~g~~VlV~GaG~vG~~a~qla~~-~Ga~Vi~~~~--~~~~~-~~~~~lGa~~~i~~~ 218 (340)
T 3s2e_A 157 KGLKVTDTRPGQWVVISGIGGLGHVAVQYARA-MGLRVAAVDI--DDAKL-NLARRLGAEVAVNAR 218 (340)
T ss_dssp HHHHTTTCCTTSEEEEECCSTTHHHHHHHHHH-TTCEEEEEES--CHHHH-HHHHHTTCSEEEETT
T ss_pred HHHHHcCCCCCCEEEEECCCHHHHHHHHHHHH-CCCeEEEEeC--CHHHH-HHHHHcCCCEEEeCC
Confidence 345555 9999999999887778887777765 5887665543 34443 356778888776543
No 141
>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}
Probab=20.71 E-value=2.3e+02 Score=25.83 Aligned_cols=58 Identities=14% Similarity=0.122 Sum_probs=39.6
Q ss_pred HHHhcc-CCCCCEEEEEcCCCHHHHHHHHHHHHhcceEeecCCCcCHHHHHHHHHhcCccEEE
Q 010344 8 NALDTM-FSKGDAIAIDMPMTVHAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIF 69 (512)
Q Consensus 8 ~~L~~~-i~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~iv 69 (512)
+.|.+. +++||+|+|...-.+-..++.+|- ..|+-++.+..+-... ..++..+++.++
T Consensus 167 ~~l~~~~~~~g~~VlV~GaG~vG~~a~qla~-~~Ga~Vi~~~~~~~~~---~~~~~lGa~~v~ 225 (348)
T 3two_A 167 SPLKFSKVTKGTKVGVAGFGGLGSMAVKYAV-AMGAEVSVFARNEHKK---QDALSMGVKHFY 225 (348)
T ss_dssp HHHHHTTCCTTCEEEEESCSHHHHHHHHHHH-HTTCEEEEECSSSTTH---HHHHHTTCSEEE
T ss_pred HHHHhcCCCCCCEEEEECCcHHHHHHHHHHH-HCCCeEEEEeCCHHHH---HHHHhcCCCeec
Confidence 345556 999999999987556777777765 4588766655443222 245667888877
No 142
>3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative aminotransferase, structural genomics, center for structural genomics, JCSG; HET: PLP; 1.65A {Mus musculus} SCOP: c.67.1.3 PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A*
Probab=20.51 E-value=3.1e+02 Score=24.98 Aligned_cols=59 Identities=14% Similarity=0.041 Sum_probs=34.6
Q ss_pred CCCCCEEEEEcCCCHHHHHHHHHHHHhcceEeec--CC--CcCHHHHHHHHHhcCccEEEeccc
Q 010344 14 FSKGDAIAIDMPMTVHAVIIYLAIILAGYVVVSI--AD--SFAAREIATRLRVSKAKGIFTQDF 73 (512)
Q Consensus 14 i~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l--~~--~~~~~~l~~~l~~~~~~~iv~~~~ 73 (512)
+++||.|.+..+.... ....-++...|+.++.+ +. ....+++...++..++++|+....
T Consensus 95 ~~~gd~vl~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~ 157 (393)
T 3kgw_A 95 LEPGDSFLTGTNGIWG-MRAAEIADRIGARVHQMIKKPGEHYTLQEVEEGLAQHKPVLLFLVHG 157 (393)
T ss_dssp CCTTCEEEEEESSHHH-HHHHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHHHHCCSEEEEESE
T ss_pred CCCCCEEEEEeCCchh-HHHHHHHHHcCCceEEEeCCCCCCCCHHHHHHHHhhCCCcEEEEecc
Confidence 7888888877443321 11233344556655444 33 246778888887767777666543
No 143
>1vjo_A Alanine--glyoxylate aminotransferase; 17130350, ALR1004, STR genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: PLP; 1.70A {Nostoc SP} SCOP: c.67.1.3
Probab=20.23 E-value=3.3e+02 Score=24.94 Aligned_cols=58 Identities=17% Similarity=0.092 Sum_probs=33.2
Q ss_pred CCCCCEEEEEcCCCHHHHHHHHHHHHhcceEeecC--C--CcCHHHHHHHHHhcCccEEEecc
Q 010344 14 FSKGDAIAIDMPMTVHAVIIYLAIILAGYVVVSIA--D--SFAAREIATRLRVSKAKGIFTQD 72 (512)
Q Consensus 14 i~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~--~--~~~~~~l~~~l~~~~~~~iv~~~ 72 (512)
+++||.|.+..+..... ...-++...|+.++.++ + ....+++...++..++++|+...
T Consensus 106 ~~~gd~Vl~~~~~~~~~-~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~v~~~~ 167 (393)
T 1vjo_A 106 VEPGDVVLIGVAGYFGN-RLVDMAGRYGADVRTISKPWGEVFSLEELRTALETHRPAILALVH 167 (393)
T ss_dssp CCTTCEEEEEESSHHHH-HHHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHHHHCCSEEEEES
T ss_pred cCCCCEEEEEcCChhHH-HHHHHHHHcCCceEEEecCCCCCCCHHHHHHHHhhCCceEEEEec
Confidence 67888887776654431 12223445566554443 3 25667777777654566666554
No 144
>2bkw_A Alanine-glyoxylate aminotransferase 1; analine-glyoxylate aminotransferase, pyridoxal-5-phosphate, SAD, glycolate pathway; HET: LLP; 2.57A {Saccharomyces cerevisiae} SCOP: c.67.1.3
Probab=20.19 E-value=4e+02 Score=24.15 Aligned_cols=57 Identities=9% Similarity=0.004 Sum_probs=32.6
Q ss_pred CCCCEEEEEcCCCHHHHHHHHHHHHhcceEeecCC---C--cCHHHHHHHHHhcCccEEEecc
Q 010344 15 SKGDAIAIDMPMTVHAVIIYLAIILAGYVVVSIAD---S--FAAREIATRLRVSKAKGIFTQD 72 (512)
Q Consensus 15 ~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~---~--~~~~~l~~~l~~~~~~~iv~~~ 72 (512)
++||.|.+.-+....... .-++...|+.++.++. . ...+++...++..++++|+...
T Consensus 84 ~~gd~vlv~~~~~~~~~~-~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~ 145 (385)
T 2bkw_A 84 APNKNVLVVSTGTFSDRF-ADCLRSYGAQVDVVRPLKIGESVPLELITEKLSQNSYGAVTVTH 145 (385)
T ss_dssp CSCCEEEEECSSHHHHHH-HHHHHHTTCEEEEECCSSTTSCCCHHHHHHHHHHSCCSEEEEES
T ss_pred CCCCeEEEEcCCcchHHH-HHHHHHcCCceEEEecCCCCCCCCHHHHHHHHhcCCCCEEEEEc
Confidence 788887666443332221 1234556766655543 2 4667787777664567666554
Done!