Query 010345
Match_columns 512
No_of_seqs 253 out of 2134
Neff 10.3
Searched_HMMs 46136
Date Thu Mar 28 23:26:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010345.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010345hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0534 NorM Na+-driven multid 100.0 1.1E-55 2.4E-60 441.4 56.0 437 35-475 12-452 (455)
2 PRK10189 MATE family multidrug 100.0 1.2E-51 2.6E-56 416.4 55.6 438 32-472 19-468 (478)
3 PRK00187 multidrug efflux prot 100.0 3.3E-50 7.2E-55 406.0 57.8 430 36-468 6-446 (464)
4 PRK01766 multidrug efflux prot 100.0 1.7E-48 3.6E-53 395.1 57.5 435 33-470 5-446 (456)
5 PRK10367 DNA-damage-inducible 100.0 4.1E-48 8.9E-53 387.1 55.5 423 37-470 6-434 (441)
6 PRK09575 vmrA multidrug efflux 100.0 3.4E-48 7.4E-53 390.8 54.3 423 37-465 9-435 (453)
7 TIGR01695 mviN integral membra 100.0 1.6E-36 3.4E-41 312.3 54.6 413 42-466 2-428 (502)
8 TIGR02900 spore_V_B stage V sp 100.0 2.8E-36 6.2E-41 309.4 51.2 415 43-466 2-434 (488)
9 TIGR00797 matE putative efflux 100.0 4.7E-36 1E-40 293.3 43.8 338 48-388 1-341 (342)
10 PRK15099 O-antigen translocase 100.0 1.6E-34 3.5E-39 289.3 47.5 405 42-465 3-411 (416)
11 KOG1347 Uncharacterized membra 100.0 1.1E-35 2.5E-40 294.4 33.7 446 32-479 20-465 (473)
12 PF03023 MVIN: MviN-like prote 100.0 2.3E-29 5E-34 252.2 54.5 387 70-467 5-404 (451)
13 COG0728 MviN Uncharacterized m 100.0 7.7E-28 1.7E-32 236.4 53.3 420 40-467 7-438 (518)
14 PRK10459 colanic acid exporter 100.0 1.5E-27 3.3E-32 244.5 50.6 397 40-465 5-404 (492)
15 COG2244 RfbX Membrane protein 100.0 2.3E-25 5E-30 227.9 45.8 404 38-464 4-409 (480)
16 COG0534 NorM Na+-driven multid 99.9 9.4E-21 2E-25 190.0 31.4 209 256-467 12-222 (455)
17 PRK10367 DNA-damage-inducible 99.9 4.6E-20 9.9E-25 185.0 32.3 207 257-465 5-211 (441)
18 PRK10189 MATE family multidrug 99.9 3.7E-20 8E-25 187.4 31.5 204 258-464 26-235 (478)
19 PRK00187 multidrug efflux prot 99.9 4.7E-20 1E-24 186.7 31.6 206 256-465 5-214 (464)
20 PRK09575 vmrA multidrug efflux 99.9 5.8E-20 1.3E-24 185.6 29.6 207 257-465 8-214 (453)
21 PRK01766 multidrug efflux prot 99.9 2.4E-19 5.3E-24 181.9 31.7 209 256-467 7-219 (456)
22 TIGR01695 mviN integral membra 99.8 2.2E-17 4.7E-22 170.2 32.0 229 36-274 219-452 (502)
23 TIGR00797 matE putative efflux 99.8 8.8E-18 1.9E-22 164.2 27.6 194 269-465 1-196 (342)
24 PF01943 Polysacc_synt: Polysa 99.8 5.1E-16 1.1E-20 146.6 33.1 270 43-329 2-272 (273)
25 TIGR02900 spore_V_B stage V sp 99.8 2.3E-16 5.1E-21 162.0 25.7 204 34-242 219-434 (488)
26 PF03023 MVIN: MviN-like prote 99.8 2.4E-15 5.2E-20 151.2 31.7 205 37-243 195-404 (451)
27 PF01554 MatE: MatE; InterPro 99.7 8.2E-18 1.8E-22 145.5 8.5 162 269-432 1-162 (162)
28 COG0728 MviN Uncharacterized m 99.7 5.1E-14 1.1E-18 139.3 35.0 232 37-277 229-465 (518)
29 PF01554 MatE: MatE; InterPro 99.7 7.8E-18 1.7E-22 145.7 5.5 160 48-208 1-162 (162)
30 PRK10459 colanic acid exporter 99.7 1.4E-13 3.1E-18 141.3 35.6 200 36-241 203-404 (492)
31 PRK15099 O-antigen translocase 99.7 3.4E-14 7.4E-19 142.5 25.2 199 35-240 210-410 (416)
32 PF13440 Polysacc_synt_3: Poly 99.6 8E-13 1.7E-17 123.1 31.3 247 58-328 2-250 (251)
33 COG2244 RfbX Membrane protein 99.6 2.8E-13 6E-18 138.8 26.7 187 35-227 208-396 (480)
34 PF04506 Rft-1: Rft protein; 99.4 8.7E-10 1.9E-14 111.8 32.9 420 44-466 5-470 (549)
35 KOG1347 Uncharacterized membra 99.3 2.6E-10 5.7E-15 114.0 23.3 214 257-474 24-242 (473)
36 KOG2864 Nuclear division RFT1 99.3 6.1E-08 1.3E-12 91.9 32.0 419 38-466 6-449 (530)
37 PF07260 ANKH: Progressive ank 98.9 1.2E-05 2.7E-10 73.4 28.5 263 37-307 8-285 (345)
38 PF14667 Polysacc_synt_C: Poly 98.5 4.3E-06 9.4E-11 70.5 13.0 80 385-467 2-81 (146)
39 PF14667 Polysacc_synt_C: Poly 98.4 3.1E-05 6.7E-10 65.2 17.4 79 162-242 2-80 (146)
40 PF04506 Rft-1: Rft protein; 98.3 0.00019 4.2E-09 73.3 22.0 203 38-241 251-469 (549)
41 PF13440 Polysacc_synt_3: Poly 98.2 0.00081 1.8E-08 62.2 24.3 164 284-464 7-171 (251)
42 PF01943 Polysacc_synt: Polysa 98.2 0.0012 2.6E-08 61.9 25.1 185 267-465 5-190 (273)
43 PF07260 ANKH: Progressive ank 98.0 0.014 3.1E-07 53.9 25.1 170 257-433 7-179 (345)
44 KOG2864 Nuclear division RFT1 97.9 0.00082 1.8E-08 64.6 17.2 202 39-242 238-449 (530)
45 COG4267 Predicted membrane pro 97.5 0.097 2.1E-06 49.5 38.3 318 90-434 74-413 (467)
46 COG4267 Predicted membrane pro 68.4 1.2E+02 0.0026 29.6 21.0 137 312-465 74-210 (467)
47 PF04505 Dispanin: Interferon- 57.2 69 0.0015 23.6 6.8 41 315-355 33-73 (82)
48 PF05975 EcsB: Bacterial ABC t 36.8 4.3E+02 0.0093 26.1 17.0 40 112-151 89-130 (386)
49 COG3162 Predicted membrane pro 35.0 2E+02 0.0044 21.9 9.2 48 30-77 10-58 (102)
50 PTZ00343 triose or hexose phos 34.1 1.8E+02 0.0039 28.3 7.8 39 45-83 50-89 (350)
51 PF05975 EcsB: Bacterial ABC t 31.9 5.1E+02 0.011 25.6 18.1 39 335-373 90-128 (386)
52 PF05684 DUF819: Protein of un 29.0 4.6E+02 0.0099 25.9 9.6 102 407-510 13-117 (378)
53 PF03904 DUF334: Domain of unk 24.7 3.2E+02 0.0068 24.5 6.7 37 113-149 143-179 (230)
54 PF10856 DUF2678: Protein of u 23.6 33 0.00072 26.8 0.5 27 472-498 87-113 (118)
55 PF05915 DUF872: Eukaryotic pr 23.1 3E+02 0.0064 21.9 5.7 6 1-6 6-11 (115)
56 TIGR00383 corA magnesium Mg(2+ 21.5 2.7E+02 0.0058 26.6 6.5 54 412-468 256-317 (318)
57 PRK10582 cytochrome o ubiquino 21.5 4.1E+02 0.0088 20.9 10.0 53 445-499 47-99 (109)
58 PRK09546 zntB zinc transporter 20.2 3.1E+02 0.0068 26.3 6.6 49 417-468 267-323 (324)
No 1
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]
Probab=100.00 E-value=1.1e-55 Score=441.38 Aligned_cols=437 Identities=27% Similarity=0.397 Sum_probs=413.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccc
Q 010345 35 IIEEVKRQLWLSGPLISVSLLQFCLQMISVMFVGHLGELPLSGASMATSFATVTGFSFLVGLSSALETLCGQSYGAKQYH 114 (512)
Q Consensus 35 ~~~~~~~i~~~~~p~~~~~~~~~~~~~i~~~~i~~lg~~~~~~~~~~~~i~~~~~~~~~~gl~~~~~~~is~~~~~~~~~ 114 (512)
.++..|+++++++|++++++.+.+++++|+.++||++++++++.+++.++..+. ..+..|++.|+.+.+||++|+||++
T Consensus 12 ~~~~~k~l~~la~P~i~~~l~~~l~~~vD~~~vG~~~~~alaav~la~~i~~~~-~~~~~gl~~g~~~liaq~~Ga~~~~ 90 (455)
T COG0534 12 FKKILKLLLKLAIPIILGNLLQTLYGLVDTFMVGHLGAEALAAVGLANPIFFLI-IAIFIGLGTGTTVLVAQAIGAGDRK 90 (455)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH-HHHHHHHHHhHHHHHHHHHcCCchH
Confidence 556889999999999999999999999999999999999999999999999998 9999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCchhhHHH
Q 010345 115 MLGIHMQRGMFVLLLISVPLALI-WANTESLLVAAHQDSEISKEAGLYARYMIPSIFAYAILQCLVRFLQTQNIVFPMVL 193 (512)
Q Consensus 115 ~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 193 (512)
++++..++++.+++.++++..++ +.+.++++.+++.++|+.+.+.+|+++..++.|+..+.....+.+|+.||+|.+++
T Consensus 91 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~m~ 170 (455)
T COG0534 91 KAKRVLGQGLLLALLLGLLLAILLLFFAEPLLRLLGAPAEVLELAAEYLRIILLGAPFALLSFVLSGILRGLGDTKTPMY 170 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHH
Confidence 99999999999999999887776 88999999999998889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHh-cC-CCcchhHHHHHHHHHHHHHHHHHHHHhCcc-ccccccCccHHHHHHHHHHHHHHhhH
Q 010345 194 SSGITALLHILVCWILVFK-SG-LGSRGAALANSISYWINVLLLAIYVKFSSS-CAKTWTGFSKEALNNVFNFVRLAIPS 270 (512)
Q Consensus 194 ~~~~~~~~~i~l~~~li~~-~~-~g~~g~~~a~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~p~ 270 (512)
.++++.++|+++|++|+++ ++ +|+.|+++||++++.+..+...+++.++++ ......+..+.+++..|++++.|+|.
T Consensus 171 ~~~~~~~lNivln~llI~g~~g~lGv~GAA~AT~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lG~p~ 250 (455)
T COG0534 171 ILLLGNLLNIVLNYLLIFGLFGGLGVAGAALATVIARWIGALLLLIYLLRKKRLLSLFKKKLLKPDRKLLKEILRLGLPI 250 (455)
T ss_pred HHHHHHHHHHHhhHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhhhccCCCHHHHHHHHHhcccH
Confidence 9999999999999999998 46 999999999999999999999999987764 22222233334679999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHH
Q 010345 271 AVMVCLEMWSFEMMVLLSGLLPNPALETSVLSISLNTASTVWMIPFGLSGAASTRVSNELGAGHPEAARLAVCVVLVMAV 350 (512)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~l~~g~~~~a~~~~~~~i~~~~~~~~~~l~~a~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 350 (512)
++++......+...+.++++++ ++.+|+|+++.++.++..+++.+++++.+|.+++++|+||+|++++..+.+.+++.
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~G--~~~lAa~~i~~~i~~~~~~~~~gi~~a~~~lvG~~~Ga~~~~~a~~~~~~~~~~~~ 328 (455)
T COG0534 251 FLESLSESLGFLLLTLFVARLG--TVALAAYGIALRIASFIFMPPFGIAQAVTILVGQNLGAGNYKRARRAARLALKLSL 328 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHhcC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998 88999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhhhhccCcHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccCcchhhHHHHHHHHHHhhHHHH
Q 010345 351 TEGILVGSVLILIRNVWGYAYSNEIEVVKYVASMLPILAASNFLDGLQCVLSGIARGCGWQMIGAFVNLGSYYLVGIPSA 430 (512)
Q Consensus 351 ~i~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l~ 430 (512)
.+++..+++++++++++.++|++|+|+.+.+..++++.++..++++++.+..+.+++.||++.++..++.+.|.+.+|+.
T Consensus 329 ~~~~~~~~i~~~f~~~i~~lF~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~g~lrg~g~~~~~~~~~~~~~~~~~lp~~ 408 (455)
T COG0534 329 LIALLIALLLLLFREPIISLFTTDPEVIALAVILLLIAALFQPFDGIQFVLSGVLRGAGDAKIPFIISLLSYWGFRLPLA 408 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHH
Q 010345 431 ILLAFLLHFGGRGLWLGIICALIVQATSLGIITARTNWEKEVSHS 475 (512)
Q Consensus 431 ~~l~~~~~~g~~G~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (512)
+++.++. +|..|+|++...++.+..++..+++++.+|++...+.
T Consensus 409 ~~l~~~~-~g~~Gvw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 452 (455)
T COG0534 409 YLLGFFF-LGLAGVWIGFPLSLILRAILLLLRLRRGRWRRKAVAA 452 (455)
T ss_pred HHHhhhc-ccchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhc
Confidence 9998876 8999999999999999999999999999888765543
No 2
>PRK10189 MATE family multidrug exporter; Provisional
Probab=100.00 E-value=1.2e-51 Score=416.36 Aligned_cols=438 Identities=17% Similarity=0.201 Sum_probs=402.5
Q ss_pred hhhHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 010345 32 KKKIIEE--VKRQLWLSGPLISVSLLQFCLQMISVMFVGHLGELPLSGASMATSFATVTGFSFLVGLSSALETLCGQSYG 109 (512)
Q Consensus 32 ~~~~~~~--~~~i~~~~~p~~~~~~~~~~~~~i~~~~i~~lg~~~~~~~~~~~~i~~~~~~~~~~gl~~~~~~~is~~~~ 109 (512)
+++.++. .|+++++++|.+++++...+...+|+.+++++|++++++++++.++..+. ..+..|++++.++.++|+.|
T Consensus 19 ~~~~~~~~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~lG~~alAA~~i~~~i~~~~-~~~~~gl~~g~~~lvsq~~G 97 (478)
T PRK10189 19 KRKSYRVLFWREITPLAVPIFIENLCVLLMGVLSTFLVSWLGKEAMAGVGLADSFNMVI-MAFFAAIDLGTTVVVAFSLG 97 (478)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhc
Confidence 4444544 99999999999999999999999999999999999999999999999887 88899999999999999999
Q ss_pred CCccchHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcC--CCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcC
Q 010345 110 AKQYHMLGIHMQRGMFVLLLISVPLALI-WANTESLLVAAH--QDSEISKEAGLYARYMIPSIFAYAILQCLVRFLQTQN 186 (512)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~i~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~ 186 (512)
++|+|++++..++++.++...+++.+++ .++.++++.++. .|+|+.+.+.+|+++..++.|+..+.....+++|+.|
T Consensus 98 a~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~ll~l~~~~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G 177 (478)
T PRK10189 98 KRDRRRARAAARQSLVIMTLFAVLLAVLIHFFGEQIIDLVAGDATPEVKALALTYLELTVWSYPAAAITLIGSGALRGAG 177 (478)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999988877 678899999984 6899999999999999999999999999999999999
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHhc----CCCcchhHHHHHHHHHHHHHHHHHHHHhCcc--ccccccC-ccHHHHHH
Q 010345 187 IVFPMVLSSGITALLHILVCWILVFKS----GLGSRGAALANSISYWINVLLLAIYVKFSSS--CAKTWTG-FSKEALNN 259 (512)
Q Consensus 187 ~~~~~~~~~~~~~~~~i~l~~~li~~~----~~g~~g~~~a~~i~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~ 259 (512)
|++.++..++.+.++|++++++++++. ++|+.|+++|+.+++.+..+...+++.++++ .+.++++ .++.+++.
T Consensus 178 ~~~~~~~i~~~~~~~ni~l~~~li~g~~~~~~lGv~Gaa~At~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (478)
T PRK10189 178 NTKIPLLINGGMNILNIIISSILIYGLFSWQGLGFVGAGLGLTISRYIGAVAIIWVLMIGFNPALRISLKSYFKPLNFAI 257 (478)
T ss_pred chHHhHHHHHHHHHHHHHHhHHHHhcCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHhccCccceeeeccccccCCHHH
Confidence 999999999999999999999999763 7899999999999999988887666654322 2222222 12235688
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHH
Q 010345 260 VFNFVRLAIPSAVMVCLEMWSFEMMVLLSGLLPNPALETSVLSISLNTASTVWMIPFGLSGAASTRVSNELGAGHPEAAR 339 (512)
Q Consensus 260 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~g~~~~a~~~~~~~i~~~~~~~~~~l~~a~~~~~~~~~g~~~~~~~~ 339 (512)
+|++++.|+|.+++.........+.+.++++++ ++++|+|+++.++.++..++..+++++..|.+++++|+||++++|
T Consensus 258 ~~~il~iG~P~~~~~~~~~~~~~~~~~~~~~~G--~~~~Aa~~I~~~i~~~~~~~~~gi~~A~~~lvg~~~Ga~~~~~a~ 335 (478)
T PRK10189 258 IWEVMGIGIPASIESVLFNGGKLLTQMFVAGMG--TSVIAGNFIAFSIAALINLPGNALGSASTIITGTRLGKGQIAQAE 335 (478)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHHHHHcC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHH
Confidence 999999999999999999988888888888888 789999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCcHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccCcchhhHHHHH
Q 010345 340 LAVCVVLVMAVTEGILVGSVLILIRNVWGYAYSNEIEVVKYVASMLPILAASNFLDGLQCVLSGIARGCGWQMIGAFVNL 419 (512)
Q Consensus 340 ~~~~~~~~~~~~i~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~ 419 (512)
+..+.+.+++..+++..+++++++++++..+|++|+|+.+.+..++++.+...++++++.+..+.+++.||++.++.+++
T Consensus 336 ~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~lFt~d~~v~~~~~~~l~~~~~~~~~~~~~~~~~g~lrg~G~t~~~~~i~~ 415 (478)
T PRK10189 336 RQLRHVFWLSTLGLTAIAWLSAPFAGLLASFYTQDPDVKHVVKILIWLNALFMPIWAASWVLPAGLKGARDARYAMWVSM 415 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCCchHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHccHHHHH
Q 010345 420 GSYYLVGIPSAILLAFLLHFGGRGLWLGIICALIVQATSLGIITARTNWEKEV 472 (512)
Q Consensus 420 ~~~~~~~i~l~~~l~~~~~~g~~G~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 472 (512)
.+.|++.+|+.+++....++|..|+|++..+++.+..++.++++++.+|+++.
T Consensus 416 ~~~~~v~ip~~~ll~~~~~~g~~Gvw~~~~~~~~~~~~~~~~r~~~~~W~~~~ 468 (478)
T PRK10189 416 LGMWGCRVVAGYILGIMLGFGVVGVWMGMFLDWAVRGVLFYWRMVSGRWLWKY 468 (478)
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHcCccccCC
Confidence 99999999999999887789999999999999999999999999999998744
No 3
>PRK00187 multidrug efflux protein NorA; Provisional
Probab=100.00 E-value=3.3e-50 Score=405.97 Aligned_cols=430 Identities=25% Similarity=0.342 Sum_probs=393.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccch
Q 010345 36 IEEVKRQLWLSGPLISVSLLQFCLQMISVMFVGHLGELPLSGASMATSFATVTGFSFLVGLSSALETLCGQSYGAKQYHM 115 (512)
Q Consensus 36 ~~~~~~i~~~~~p~~~~~~~~~~~~~i~~~~i~~lg~~~~~~~~~~~~i~~~~~~~~~~gl~~~~~~~is~~~~~~~~~~ 115 (512)
++..|++++.++|.+++++...+...+|+.+++|+|++++++++++.++.++. ..+..|++++.++.++|++|++|+|+
T Consensus 6 ~~~~k~il~~a~P~~~~~~~~~~~~~~d~~~v~~lg~~alAa~~i~~~i~~~~-~~~~~gl~~~~~~i~aq~~Ga~~~~~ 84 (464)
T PRK00187 6 TTELKAILRLAGPLIASQLAHMLMVFTDTLMMGRLGPEALAGGGLGAASYSFV-SIFCVGVIAAVGTLVAIRHGAGDIEG 84 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCChhh
Confidence 45789999999999999999999999999999999999999999999999987 78889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCchhhHHHHH
Q 010345 116 LGIHMQRGMFVLLLISVPLALIWANTESLLVAAHQDSEISKEAGLYARYMIPSIFAYAILQCLVRFLQTQNIVFPMVLSS 195 (512)
Q Consensus 116 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 195 (512)
+++..+.++.+...++++..++..+.++++++++.|+|+.+.+.+|+++..++.|+..+....++++|+.|+++.+++.+
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~l~~~~~ev~~~~~~Yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~~ 164 (464)
T PRK00187 85 ATRLAQAGLWLAWLLALVAALLLWNLKPLLLLFGQAPQNVDAAMQFLHLLPFALPGYLSFMALRGFTSALGRAGPVMVIS 164 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHH
Confidence 99999999999999999877775577999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhc----CCCcchhHHHHHHHHHHHHHHHHHHHHhCccc-cccc-cCccHHHHHHHHHHHHHHhh
Q 010345 196 GITALLHILVCWILVFKS----GLGSRGAALANSISYWINVLLLAIYVKFSSSC-AKTW-TGFSKEALNNVFNFVRLAIP 269 (512)
Q Consensus 196 ~~~~~~~i~l~~~li~~~----~~g~~g~~~a~~i~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~p 269 (512)
+++.++|+++|++++++. ++|+.|+++|+.+++....+...++++++++. +.+. ++..+.+++..|++++.++|
T Consensus 165 ~~~~~~ni~~~~~lIfg~~g~p~~Gv~Gaalat~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~il~lg~P 244 (464)
T PRK00187 165 LAGAVANLLLNYALIEGWFGLPKLGLMGIGLVTALVSNGMALALALYIRRHPAYAAYPLRKGLSRPSRAALRELWRLGLP 244 (464)
T ss_pred HHHHHHHHHHHHHHHcCCCCCccccccchHHHHHHHHHHHHHHHHHHHHhcchhhhhhhhccccCCCHHHHHHHHHhhhh
Confidence 999999999999999763 58999999999999988887776666544322 2221 12223356789999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHH
Q 010345 270 SAVMVCLEMWSFEMMVLLSGLLPNPALETSVLSISLNTASTVWMIPFGLSGAASTRVSNELGAGHPEAARLAVCVVLVMA 349 (512)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~l~~g~~~~a~~~~~~~i~~~~~~~~~~l~~a~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 349 (512)
.++++..+.....+++.++++++ +++++++++++++..+...+..+++++..+.++|++|+||+|++++..+.+..++
T Consensus 245 ~~~~~~~~~~~~~i~~~~i~~~G--~~alAa~~i~~~i~~l~~~~~~gi~~a~~~lvgq~~Ga~~~~~~~~~~~~~l~~~ 322 (464)
T PRK00187 245 IGGTYAVEVGLFTFAALCMGALG--STQLAAHQIALQIVSVAFMVPVGLSYAVTMRVGQHYGAGRLLEARRAGRVGIGFG 322 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999998 7899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhhhhhccC--cH---hHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccCcchhhHHHHHHHHHH
Q 010345 350 VTEGILVGSVLILIRNVWGYAYSN--EI---EVVKYVASMLPILAASNFLDGLQCVLSGIARGCGWQMIGAFVNLGSYYL 424 (512)
Q Consensus 350 ~~i~~~~~~~l~~~~~~i~~~~~~--~~---~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~ 424 (512)
..++++.+++++++++++.++|++ |+ |+.+.+..++++.+++.++++++.+..+++++.||++.+++.++.+.|+
T Consensus 323 ~~~~~~~~~~~~~f~~~i~~~ft~~~~~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~~~lrg~G~~~~~~~~~~~~~~~ 402 (464)
T PRK00187 323 AVVMLLFAGLFWLLPEAIIGLFLDRNDPAFAEIVQLAVSLLAVAAWFELFDGTQTIAMGAIRGLKDARTTFLIGLACYWL 402 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHhccCccHHHHHHHHHHHHH
Confidence 999999999999999999999964 44 6788899999999999999999999999999999999999999999889
Q ss_pred hhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHccH
Q 010345 425 VGIPSAILLAFLLHFGGRGLWLGIICALIVQATSLGIITARTNW 468 (512)
Q Consensus 425 ~~i~l~~~l~~~~~~g~~G~~~a~~~~~~~~~~~~~~~~~~~~~ 468 (512)
+++|+.+++.+.+++|+.|+|+++.+++.+..++...+++.++|
T Consensus 403 ~~ipl~~ll~~~~~~g~~Gvw~~~~i~~~~~~~~~~~~~~~~~~ 446 (464)
T PRK00187 403 VGAPLAWLLAFTLGWGAVGVWWGLALGLACAAVALTLAFEWKTA 446 (464)
T ss_pred HHHHHHHHHHhccCCCceeeHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999988888999999999999999998887776655433
No 4
>PRK01766 multidrug efflux protein; Reviewed
Probab=100.00 E-value=1.7e-48 Score=395.13 Aligned_cols=435 Identities=24% Similarity=0.400 Sum_probs=400.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Q 010345 33 KKIIEEVKRQLWLSGPLISVSLLQFCLQMISVMFVGHLGELPLSGASMATSFATVTGFSFLVGLSSALETLCGQSYGAKQ 112 (512)
Q Consensus 33 ~~~~~~~~~i~~~~~p~~~~~~~~~~~~~i~~~~i~~lg~~~~~~~~~~~~i~~~~~~~~~~gl~~~~~~~is~~~~~~~ 112 (512)
++.++.+|+++++++|.+++++...+...+|+.+++++|++++++++++.++.... ..+..|++.+..+.++|+.|++|
T Consensus 5 ~~~~~~~~~il~~~~P~~~~~~~~~~~~~~d~~~i~~~g~~~laa~~~~~~~~~~~-~~~~~g~~~a~~~~vs~~~g~~~ 83 (456)
T PRK01766 5 QKYKSEARQLLALALPILLAQVAQTAMGFVDTVMAGGVSATDLAAVAIGTSIWLPV-ILFGHGLLLALTPIVAQLNGAGR 83 (456)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCC
Confidence 45577899999999999999999999999999999999999999999999987776 77889999999999999999999
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCchhhH
Q 010345 113 YHMLGIHMQRGMFVLLLISVPLALI-WANTESLLVAAHQDSEISKEAGLYARYMIPSIFAYAILQCLVRFLQTQNIVFPM 191 (512)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 191 (512)
+|+.++..+.++.++...++++.++ +.+.+++..+++.|++..+.+.+|+++..++.++..+.....+++|+.|+++.+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~yl~i~~~~~~~~~~~~~~~~~l~~~g~~~~~ 163 (456)
T PRK01766 84 RERIAHQVRQGLWLALFLSVLIMLVLYNAVPPILNMMNLEPEVADIAVGYLHALLWGIPAYLLYQVLRSFIDGLGKTKPT 163 (456)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHH
Confidence 9999999999999999999888777 667889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHh----cCCCcchhHHHHHHHHHHHHHHHHHHHHhCcccc-c-cccCccHHHHHHHHHHHH
Q 010345 192 VLSSGITALLHILVCWILVFK----SGLGSRGAALANSISYWINVLLLAIYVKFSSSCA-K-TWTGFSKEALNNVFNFVR 265 (512)
Q Consensus 192 ~~~~~~~~~~~i~l~~~li~~----~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~ 265 (512)
++.++++.++|++++++++++ +++|+.|+++|+.+++.+......++.+++++.+ . .+++..+.+++..|++++
T Consensus 164 ~~~~~i~~ivni~l~~~li~~~~~~~~~Gv~Gaa~at~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~il~ 243 (456)
T PRK01766 164 MVIGFLGLLINIPLNYIFIYGKFGFPELGGVGCGVATAIVYWVMFLAMLIYIKRARRFRDFRLFKGLYKPDWAVIKRLLK 243 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHHHHHHHHHHhChhhhHHHhhccccCCCHHHHHHHHH
Confidence 999999999999999999864 3689999999999999999998888876554321 1 122222235678999999
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHH
Q 010345 266 LAIPSAVMVCLEMWSFEMMVLLSGLLPNPALETSVLSISLNTASTVWMIPFGLSGAASTRVSNELGAGHPEAARLAVCVV 345 (512)
Q Consensus 266 ~~~p~~~~~~~~~~~~~~~~~~~~~l~~g~~~~a~~~~~~~i~~~~~~~~~~l~~a~~~~~~~~~g~~~~~~~~~~~~~~ 345 (512)
.++|.+++...+...+.++..++++++ ++++++++++.++.++...+..+++.+..+.++|++|+||++++++..+.+
T Consensus 244 l~~P~~~~~~~~~~~~~~~~~~~~~~G--~~~lAa~~i~~~i~~~~~~~~~gl~~a~~~~v~~~~Ga~~~~~~~~~~~~~ 321 (456)
T PRK01766 244 LGLPIGLAIFFEVSLFAVVTLLVSPLG--TVTVAAHQIALNFSSLLFMLPLSLAMALTIRVGFELGAGRTLDARQYAYIG 321 (456)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHcC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 999999999999999999999999987 779999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhccCcHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccCcchhhHHHHHHHHHHh
Q 010345 346 LVMAVTEGILVGSVLILIRNVWGYAYSNEIEVVKYVASMLPILAASNFLDGLQCVLSGIARGCGWQMIGAFVNLGSYYLV 425 (512)
Q Consensus 346 ~~~~~~i~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~ 425 (512)
.+++..++++.+++++.+++++.++|++|+|+.+.+..++++..+..++.+++....+++++.||++.++..++.+.+++
T Consensus 322 ~~~~~~~~~~~~~~~~~~~~~i~~lf~~d~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~ 401 (456)
T PRK01766 322 LAVGLGMALLTAIFLVLFREQIALLYTDDPEVVALASHLLLFAALFQFSDAIQVIGSGALRGYKDTRVIFFITFIAYWVL 401 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhccCccHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998899
Q ss_pred hHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHccHHH
Q 010345 426 GIPSAILLAFLLHFGGRGLWLGIICALIVQATSLGIITARTNWEK 470 (512)
Q Consensus 426 ~i~l~~~l~~~~~~g~~G~~~a~~~~~~~~~~~~~~~~~~~~~~~ 470 (512)
.+|..+++...+++|..|+|++..+++.+..++.++++++.+|+.
T Consensus 402 ~i~~~~~l~~~~~~G~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (456)
T PRK01766 402 GLPLGYILALTDPMGPFGFWIGLIIGLTAAAILLLLRLRKLQRQP 446 (456)
T ss_pred HHHHHHHHHhccCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999998888899999999999999999999988888876554
No 5
>PRK10367 DNA-damage-inducible SOS response protein; Provisional
Probab=100.00 E-value=4.1e-48 Score=387.06 Aligned_cols=423 Identities=17% Similarity=0.153 Sum_probs=372.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccch
Q 010345 37 EEVKRQLWLSGPLISVSLLQFCLQMISVMFVGHL-GELPLSGASMATSFATVTGFSFLVGLSSALETLCGQSYGAKQYHM 115 (512)
Q Consensus 37 ~~~~~i~~~~~p~~~~~~~~~~~~~i~~~~i~~l-g~~~~~~~~~~~~i~~~~~~~~~~gl~~~~~~~is~~~~~~~~~~ 115 (512)
++.|+++++++|.++++++..+++.+|+.+++|+ |++++++.+++.++.+.. ..+..+++.+..+.+||+.|+||+|+
T Consensus 6 ~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~l~g~~alAa~~l~~~i~~~~-~~~~~~~~~g~~~lvsq~~Ga~~~~~ 84 (441)
T PRK10367 6 SSDKALWRLALPMIFSNITVPLLGLVDTAVIGHLDSPVYLGGVAVGATATSFL-FMLLLFLRMSTTGLTAQAFGAKNPQA 84 (441)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhCCCCHHH
Confidence 4578999999999999999999999999999997 678999999999999988 88889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCchhhHHHH
Q 010345 116 LGIHMQRGMFVLLLISVPLALI-WANTESLLVAAHQDSEISKEAGLYARYMIPSIFAYAILQCLVRFLQTQNIVFPMVLS 194 (512)
Q Consensus 116 ~~~~~~~~~~~~~~~~i~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 194 (512)
+++..++++.++...+++..++ ..+.++++.+++.|+|+.+.+.+|+++..++.|+..+.....+++|+.||++.++..
T Consensus 85 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ll~~~g~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~~~~ 164 (441)
T PRK10367 85 LARALVQPLLLALGAGALIALLRTPLIDLALHIVGGSEAVLEQARRFLEIRWLSAPASLANLVLLGWLLGVQYARAPVIL 164 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHH
Confidence 9999999999999999988876 668899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHhCcccc-ccccCccHHHHHHHHHHHHHHhhHHHH
Q 010345 195 SGITALLHILVCWILVFKSGLGSRGAALANSISYWINVLLLAIYVKFSSSCA-KTWTGFSKEALNNVFNFVRLAIPSAVM 273 (512)
Q Consensus 195 ~~~~~~~~i~l~~~li~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~p~~~~ 273 (512)
++++.++|+++++++++++++|+.|+++|+.+++.+..+...++++++++.+ .+.+..+.+.++..|++++.+.|.+++
T Consensus 165 ~ii~~~vni~l~~~lI~~~~lGv~Gaa~At~is~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~ig~P~~~~ 244 (441)
T PRK10367 165 LVVGNILNIVLDLWLVMGLHMNVQGAALATVIAEYATLLIGLLMVRKVLKLRGISLEMLKTAWRGNFRRLLALNRDIMLR 244 (441)
T ss_pred HHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHhhhhhHHHHHHHHHhCchHHHH
Confidence 9999999999999999988999999999999999999888777776533211 111111211134789999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHH
Q 010345 274 VCLEMWSFEMMVLLSGLLPNPALETSVLSISLNTASTVWMIPFGLSGAASTRVSNELGAGHPEAARLAVCVVLVMAVTEG 353 (512)
Q Consensus 274 ~~~~~~~~~~~~~~~~~l~~g~~~~a~~~~~~~i~~~~~~~~~~l~~a~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~ 353 (512)
+......+.+.+.++++++ ++++|+|+++.++.++..++..+++++.+|.++|++|+||+|++|+..+++.+++..++
T Consensus 245 ~~~~~~~~~~~~~~~~~~G--~~alAa~~I~~~i~~~~~~~~~gl~~a~~~lvg~~~Ga~~~~~a~~~~~~~~~~~~~~~ 322 (441)
T PRK10367 245 SLLLQLCFGAITVLGARLG--SDIIAVNAVLMTLLTFTAYALDGFAYAVEAHSGQAYGARDGSQLLDVWRAACRQSGIVA 322 (441)
T ss_pred HHHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998 77999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhhhhhccCcHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccCc---chhhHHHHHHHHHHhhHHHH
Q 010345 354 ILVGSVLILIRNVWGYAYSNEIEVVKYVASMLPILAASNFLDGLQCVLSGIARGCGW---QMIGAFVNLGSYYLVGIPSA 430 (512)
Q Consensus 354 ~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~---~~~~~~~~~~~~~~~~i~l~ 430 (512)
...+++++++++++..+|++|+|+.+.+..++++.++..+..........++++.+| ++.++.+++.+.++..+
T Consensus 323 ~~~~~~~~~~~~~i~~lFt~d~~v~~~~~~~l~i~~~~~~~~~~~~~~~~~~~g~lrg~dt~~~~~~~~~~~~~~~~--- 399 (441)
T PRK10367 323 LLFSLVYALAGEHIIALLTSLPQIQQLADRYLIWQVILPLVGVWCYLLDGMFIGATRAAEMRNSMAVAAAGFALTLL--- 399 (441)
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHH---
Confidence 999999999999999999999999999999999988764433344444555666665 99999999888553211
Q ss_pred HHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHccHHH
Q 010345 431 ILLAFLLHFGGRGLWLGIICALIVQATSLGIITARTNWEK 470 (512)
Q Consensus 431 ~~l~~~~~~g~~G~~~a~~~~~~~~~~~~~~~~~~~~~~~ 470 (512)
. .+++|..|+|++..+++.+..++...++++. |++
T Consensus 400 --~--~~~~g~~Gvw~a~~~~~~~~~i~~~~~~~~~-~~~ 434 (441)
T PRK10367 400 --T--LPWLGNHGLWLALTVFLALRGLSLAAIWRRH-WRN 434 (441)
T ss_pred --H--HHHcCchHHHHHHHHHHHHHHHHHHHHHHHH-Hhc
Confidence 2 1346999999999999999999888776664 643
No 6
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed
Probab=100.00 E-value=3.4e-48 Score=390.83 Aligned_cols=423 Identities=17% Similarity=0.180 Sum_probs=388.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccch
Q 010345 37 EEVKRQLWLSGPLISVSLLQFCLQMISVMFVGH-LGELPLSGASMATSFATVTGFSFLVGLSSALETLCGQSYGAKQYHM 115 (512)
Q Consensus 37 ~~~~~i~~~~~p~~~~~~~~~~~~~i~~~~i~~-lg~~~~~~~~~~~~i~~~~~~~~~~gl~~~~~~~is~~~~~~~~~~ 115 (512)
+..|++++++.|.+++++...+++.+|+.++++ +|++++++++++.++..+. ..+..+++.+.++.++|+.|+||+|+
T Consensus 9 ~~~k~i~~l~~P~~~~~l~~~l~~~~d~~~lg~~~g~~~laa~~~~~~~~~~~-~~~~~~~~~g~~~lvsq~~Ga~~~~~ 87 (453)
T PRK09575 9 SIYRTFWRYTIPSIAAMLVNGLYQIVDGIFIGHYVGAEGLAGINMAWPVIGII-LGIGLMVGMGTGSLLSIKRGEGDLEK 87 (453)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHH-HHHHHHHhccHHHHHHHHhcCCCHHH
Confidence 467999999999999999999999999999999 6999999999999999987 77888999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCchhhHHHH
Q 010345 116 LGIHMQRGMFVLLLISVPLALI-WANTESLLVAAHQDSEISKEAGLYARYMIPSIFAYAILQCLVRFLQTQNIVFPMVLS 194 (512)
Q Consensus 116 ~~~~~~~~~~~~~~~~i~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 194 (512)
.++..++++.++...+++..++ ..+.++++.+++.|++..+.+.+|+++..++.|+..+.....+.+|+.|+++.++..
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~l~~~~~~~~~~~~~yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~ 167 (453)
T PRK09575 88 AKRILTTGLLLLLLLGPIVSVILFLFADDFLRAQGAEGRTLELALQYIQVLIWGCLFTLGAIALPFLLRNDESPNLATGL 167 (453)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHH
Confidence 9999999999999999988877 678999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHhCccc-cccccCccHHHHHHHHHHHHHHhhHHHH
Q 010345 195 SGITALLHILVCWILVFKSGLGSRGAALANSISYWINVLLLAIYVKFSSSC-AKTWTGFSKEALNNVFNFVRLAIPSAVM 273 (512)
Q Consensus 195 ~~~~~~~~i~l~~~li~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 273 (512)
++.+.++|+++++++++.+++|+.|+++|+.+++.+..+...+++++++.. +.+.+.. +.+++..|++++.|.|.+++
T Consensus 168 ~~~~~~~ni~l~~~li~~~~~Gi~Gaa~At~is~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~il~ig~P~~~~ 246 (453)
T PRK09575 168 MVIGALINIVLDYLFIGWLDWGLTGAAIATALAQLVVTVLGLGYFFSSRANIRLTLKEL-RFNWSLAPKIVLLGSSSFFM 246 (453)
T ss_pred HHHHHHHHHHhhHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHCCCceeEEeeccC-CcCHHHHHHHHHhChhHHHH
Confidence 999999999999999988899999999999999999998877777654332 2222222 23567899999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHH
Q 010345 274 VCLEMWSFEMMVLLSGLLPNPALETSVLSISLNTASTVWMIPFGLSGAASTRVSNELGAGHPEAARLAVCVVLVMAVTEG 353 (512)
Q Consensus 274 ~~~~~~~~~~~~~~~~~l~~g~~~~a~~~~~~~i~~~~~~~~~~l~~a~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~ 353 (512)
.....+...+...+++++++ ++++|+++++.++..+..++..+++++..|.++|++|+||+|++++..+.+.++++..+
T Consensus 247 ~~~~~~~~~~~~~~~~~~g~-~~~lAa~~i~~~i~~~~~~~~~gi~~a~~~lvg~~~Ga~~~~~~~~~~~~~l~l~~~~~ 325 (453)
T PRK09575 247 YLYGSFVVALHNRLFMEYGS-ALTVGAYAIVGYLMVLYYLVAEGIAEGMQPPVSYYFGARQYDNIKKLLKLAMKVTVLAG 325 (453)
T ss_pred HHHHHHHHHHHHHHHHHhCc-hHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCCChHHHHHHHHHHHHHHHHHH
Confidence 99999998888888888873 56899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhhhhhccC-cHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccCcchhhHHHHHHHHHHhhHHHHHH
Q 010345 354 ILVGSVLILIRNVWGYAYSN-EIEVVKYVASMLPILAASNFLDGLQCVLSGIARGCGWQMIGAFVNLGSYYLVGIPSAIL 432 (512)
Q Consensus 354 ~~~~~~l~~~~~~i~~~~~~-~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l~~~ 432 (512)
++.+++++.+++++.++|++ |+|+.+.+..++++.+++.+++++..+..+.+++.||++.++..++.. +++++|+.++
T Consensus 326 ~~~~~~~~~~~~~i~~lf~~~~~~v~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~v~ip~~~l 404 (453)
T PRK09575 326 IAWVLLLNLFPETMIALFNSGDSELIAETIVGIRLHLFAMFLDGFLVLASAYFMAVNQGGKALFISIGN-MLIQLPFLFI 404 (453)
T ss_pred HHHHHHHHHhHHHHHHhHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHh-HHHHHHHHHH
Confidence 99999999999999999995 789999999999999999999999999999999999999999999877 6789999998
Q ss_pred HHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHH
Q 010345 433 LAFLLHFGGRGLWLGIICALIVQATSLGIITAR 465 (512)
Q Consensus 433 l~~~~~~g~~G~~~a~~~~~~~~~~~~~~~~~~ 465 (512)
+... +|+.|+|+++.+++.+..++...++++
T Consensus 405 l~~~--~G~~Gvw~a~~~~~~~~~~~~~~~~~~ 435 (453)
T PRK09575 405 LPKW--LGVDGVWLAMPLSNIALSLVVAPMLWR 435 (453)
T ss_pred HHHH--HCcchHhhHHHHHHHHHHHHHHHHHHH
Confidence 8643 699999999999999988877766655
No 7
>TIGR01695 mviN integral membrane protein MviN. This model represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII.
Probab=100.00 E-value=1.6e-36 Score=312.30 Aligned_cols=413 Identities=14% Similarity=0.058 Sum_probs=348.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc-cChhhH-HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhCCCccchHHH
Q 010345 42 QLWLSGPLISVSLLQFCLQMISVMFVGH-LGELPL-SGASMATSFATVTGFSFL-VGLSSALETLCGQSYGAKQYHMLGI 118 (512)
Q Consensus 42 i~~~~~p~~~~~~~~~~~~~i~~~~i~~-lg~~~~-~~~~~~~~i~~~~~~~~~-~gl~~~~~~~is~~~~~~~~~~~~~ 118 (512)
+.|.+.-.++++++..+++++|..+++| +|++++ ++++.+.++......... .|++++..+...++.+++ |++++
T Consensus 2 ~~k~~~i~~~~~~~~~~~~~~~~~~~a~~lG~~~~~~~~~~~~~i~~~~~~~~~~~g~~~a~i~~~~~~~~~~--~~~~~ 79 (502)
T TIGR01695 2 LLKSTLIVSLGTLFSRITGFVRDAIIASAFGAGLTADAFNVAFVIPNFFRRLFAEGAFNSAFVPVFTKAKKKE--KEARR 79 (502)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhh--hHHHH
Confidence 5678889999999999999999999999 999999 899999999877623333 578888888777664332 56776
Q ss_pred HHHHHHHHHHHHHH-HHHHH-HHhhHHHHHHc--CCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCchhhHHHH
Q 010345 119 HMQRGMFVLLLISV-PLALI-WANTESLLVAA--HQDSEISKEAGLYARYMIPSIFAYAILQCLVRFLQTQNIVFPMVLS 194 (512)
Q Consensus 119 ~~~~~~~~~~~~~i-~~~~~-~~~~~~i~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 194 (512)
...+........+. +..++ +++++++..++ +.+++..+.+.+|+++..++.++..+....++++|+.||++.++..
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 159 (502)
T TIGR01695 80 AFANTVTTLLILSLLLVVLIGIFFAPFVISLLAPGFADETRSLAVSLTRIMFPYLLLISLAAVFGGILNARKRFFIPSFS 159 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCeeHHHHHH
Confidence 66666655554444 34444 66788888877 3466777889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCcchhH--HHHHHHHHHHHHHHHHHHHhCccccccccCccHHHHHHHHHHHHHHhhHHH
Q 010345 195 SGITALLHILVCWILVFKSGLGSRGAA--LANSISYWINVLLLAIYVKFSSSCAKTWTGFSKEALNNVFNFVRLAIPSAV 272 (512)
Q Consensus 195 ~~~~~~~~i~l~~~li~~~~~g~~g~~--~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 272 (512)
++...++++...+++. .++|..|++ +++.+++.+..++..++.+|++. +.+. +.+ .+++..|++++++.|..+
T Consensus 160 ~i~~~i~~i~~~~~~~--~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~-~~~-~~~~~~k~~l~~~~p~~~ 234 (502)
T TIGR01695 160 PILFNIGVILSLLFFD--WNYGQYSLALAIGVLIGGVAQLLIQLPFLRKAGF-LLKP-RFN-FRDPGLKRFLKLFLPTTL 234 (502)
T ss_pred HHHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-cccC-cCC-CCChhHHHHHHHHHHHHH
Confidence 9999887776544443 588999988 99999999988887777755432 1111 111 145678999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHH
Q 010345 273 MVCLEMWSFEMMVLLSGLLPNPALETSVLSISLNTASTVWM-IPFGLSGAASTRVSNELGAGHPEAARLAVCVVLVMAVT 351 (512)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~l~~g~~~~a~~~~~~~i~~~~~~-~~~~l~~a~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 351 (512)
++....+...+|..+.+.++ ++++++|+.+.++.+++.. +..+++++..|.+++++++||+++.++..+++.++...
T Consensus 235 ~~~~~~~~~~id~~~~~~~~--~~~v~~~~~a~~l~~~~~~~~~~~i~~~~~P~~s~~~~~~~~~~~~~~~~~~~~~~~~ 312 (502)
T TIGR01695 235 GSSASQITLLINTALASFLE--IGSVSALYYANRIYQLPLGIFGISLSTVLLPKLSRHASEGNWNELRDLLNQGIRLSLL 312 (502)
T ss_pred HHHHHHHHHHHHHHHHhcCC--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 99999999999998877666 6689999999999988764 67899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhhhhhccC----cHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccCcchhhHHHHHHHHHHhhH
Q 010345 352 EGILVGSVLILIRNVWGYAYSN----EIEVVKYVASMLPILAASNFLDGLQCVLSGIARGCGWQMIGAFVNLGSYYLVGI 427 (512)
Q Consensus 352 i~~~~~~~l~~~~~~i~~~~~~----~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i 427 (512)
+++|.++++.++++++.+++.+ |+|..+.+..+++++++..++.+++....+.+++.||+|.+++.++.. .++++
T Consensus 313 ~~~~~~~~l~~~~~~ii~l~~~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~a~g~~~~~~~~~~~~-~~i~i 391 (502)
T TIGR01695 313 LTIPSSFGLLILSIPIVSLLFERGAFSEEDTVMTATILAAYGLGLIFYSLQKVLLRAFYARKDTRTPFINSVIS-VVLNA 391 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhccCCccCHHHHHHH-HHHHH
Confidence 9999999999999999999976 557788899999999999999999999999999999999999999998 68899
Q ss_pred HHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHc
Q 010345 428 PSAILLAFLLHFGGRGLWLGIICALIVQATSLGIITART 466 (512)
Q Consensus 428 ~l~~~l~~~~~~g~~G~~~a~~~~~~~~~~~~~~~~~~~ 466 (512)
++++++. +.+|..|+|+++.+++.+..++..++.+|+
T Consensus 392 ~l~~~l~--~~~G~~G~~~a~~i~~~~~~~~~~~~~~~~ 428 (502)
T TIGR01695 392 LLSLLLI--FPLGLVGIALATSAASMVSSVLLYLMLNRR 428 (502)
T ss_pred HHHHHHH--HHHhhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9998884 347999999999999999999888777775
No 8
>TIGR02900 spore_V_B stage V sporulation protein B. SpoVB is the stage V sporulation protein B of the bacterial endopore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with rather high sequence similarity to SpoVB exist, including YkvU in B. subtilis and a number of proteins in the genus Clostridium. Member sequences for the seed alignment were chosen to select those proteins, no more than one to a genome, closest to B. subtilis SpoVB in a neighbor joining tree.
Probab=100.00 E-value=2.8e-36 Score=309.39 Aligned_cols=415 Identities=15% Similarity=0.123 Sum_probs=350.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhc-cChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccchHHHHHH
Q 010345 43 LWLSGPLISVSLLQFCLQMISVMFVGH-LGELPLSGASMATSFATVTGFSFLVGLSSALETLCGQSYGAKQYHMLGIHMQ 121 (512)
Q Consensus 43 ~~~~~p~~~~~~~~~~~~~i~~~~i~~-lg~~~~~~~~~~~~i~~~~~~~~~~gl~~~~~~~is~~~~~~~~~~~~~~~~ 121 (512)
.|.+.|.+++++...+.+++|+.+++| +|++++|.++.+.++..+.......|++++..+.++|..+++|+|+.++.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~i~~~~l~r~Lg~~~~G~~~~~~~~~~~~~~~~~~Gl~~a~~~~is~~~~~~~~~~~~~~~~ 81 (488)
T TIGR02900 2 LKGTFILTIANLITRILGFIFRIVLSRILGAEGVGLYGMAMPIYFLFITLTTGGLPVAISKFVAEASAKNDRKNIKKILK 81 (488)
T ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHhhHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHhccchhhHHHHHH
Confidence 467899999999999999999999999 8999999999999999887455567999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHH-HHhhHHHHHHcCCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCchhhHHHHHHHHHH
Q 010345 122 RGMFVLLLISVPLALI-WANTESLLVAAHQDSEISKEAGLYARYMIPSIFAYAILQCLVRFLQTQNIVFPMVLSSGITAL 200 (512)
Q Consensus 122 ~~~~~~~~~~i~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 200 (512)
+++.+....+++..++ .++.+++...+.++++. ..++++..+..++..+.....+.+|+.+|++..+..++++.+
T Consensus 82 ~~~~l~l~~~~~~~~l~~~~~~~i~~~~~~~~~~----~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~i 157 (488)
T TIGR02900 82 VSLIFTLIWSLIVTAIVFLLSPFIASTLLKDERS----LYSLLVICPAMPFIALSSVLKGYFQGISNMKPPAYIQVIEQI 157 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHcCChhH----HHHHHHHHHHHHHHHHHHHHHHHHhhhccchHhHHHHHHHHH
Confidence 9999999999888776 56777777766656543 246788889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHh-----cCCCcchhHHHHHHHHHHHHHHHHHHHHhCcccccc--ccCccHHHHHHHHHHHHHHhhHHHH
Q 010345 201 LHILVCWILVFK-----SGLGSRGAALANSISYWINVLLLAIYVKFSSSCAKT--WTGFSKEALNNVFNFVRLAIPSAVM 273 (512)
Q Consensus 201 ~~i~l~~~li~~-----~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~p~~~~ 273 (512)
+++.++..++.. .+.|+.|+++++.+++.+..+...++.+|+++.+.+ +.+..+.+++..|++++++.|..++
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~l~~~~~p~~l~ 237 (488)
T TIGR02900 158 VRISVVALLISAFLPYGLEYAVAGAYLSLVLGELVSLLYLYFFFKRKKSFSIRFPFFDYKSEGKALLFDLFSVSLPLTLS 237 (488)
T ss_pred HHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCcchHHHHHHHHHHHHHHHHH
Confidence 998876665532 245678888999999998888876666544332211 1111233467899999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCC-----hh---hHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHH
Q 010345 274 VCLEMWSFEMMVLLSGLLPN-----PA---LETSVL-SISLNTASTVWMIPFGLSGAASTRVSNELGAGHPEAARLAVCV 344 (512)
Q Consensus 274 ~~~~~~~~~~~~~~~~~l~~-----g~---~~~a~~-~~~~~i~~~~~~~~~~l~~a~~~~~~~~~g~~~~~~~~~~~~~ 344 (512)
+....+....|+.++++... .. ...+.| +.+.++..+...+..+++++..|.++++.|++|+++.++..++
T Consensus 238 ~~~~~~~~~~d~~ii~~~l~~~g~~~~~a~~~~g~~~~~a~~i~~~~~~~~~~l~~~~~p~~s~~~~~~~~~~~~~~~~~ 317 (488)
T TIGR02900 238 RFIGSLLYFLETLLVPQRLVIAGVTYREATSLYGKLSGMAMPLLTFPAVITSSLSTALVPDISEAMAKKNYSSIEKRINQ 317 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHChHHHHHHhHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999999999988865321 01 233444 4666788888888899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhccCcHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccCcchhhHHHHHHHHHH
Q 010345 345 VLVMAVTEGILVGSVLILIRNVWGYAYSNEIEVVKYVASMLPILAASNFLDGLQCVLSGIARGCGWQMIGAFVNLGSYYL 424 (512)
Q Consensus 345 ~~~~~~~i~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~ 424 (512)
..+++..++.|..+++..+++++..++.++++ +..+++++++..++.++.....+.+++.||+|..++.++.+ .+
T Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~----~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~-~i 392 (488)
T TIGR02900 318 AIKISLLLGLITTVILLVIPDELGALFYGRPD----AGNFIRVLAPSFPFLYFSAPLQSILQGLGKQKVALRNSLIG-AI 392 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc----hHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHH-HH
Confidence 99999999999999999999999999886543 57789999999999999999999999999999999999998 68
Q ss_pred hhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHc
Q 010345 425 VGIPSAILLAFLLHFGGRGLWLGIICALIVQATSLGIITART 466 (512)
Q Consensus 425 ~~i~l~~~l~~~~~~g~~G~~~a~~~~~~~~~~~~~~~~~~~ 466 (512)
+++++.+.+...+.+|..|+++++.+++.+..++..+..+|.
T Consensus 393 ~~i~l~~~l~~~~~~G~~Gaaia~~i~~~~~~~~~~~~~~~~ 434 (488)
T TIGR02900 393 VKIILLFVLTSIPSINIYGYAITFIITSVLVTILNLAEIKKN 434 (488)
T ss_pred HHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999888544778999999999999999999888887764
No 9
>TIGR00797 matE putative efflux protein, MATE family. The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.
Probab=100.00 E-value=4.7e-36 Score=293.33 Aligned_cols=338 Identities=33% Similarity=0.518 Sum_probs=309.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHH
Q 010345 48 PLISVSLLQFCLQMISVMFVGHLGELPLSGASMATSFATVTGFSFLVGLSSALETLCGQSYGAKQYHMLGIHMQRGMFVL 127 (512)
Q Consensus 48 p~~~~~~~~~~~~~i~~~~i~~lg~~~~~~~~~~~~i~~~~~~~~~~gl~~~~~~~is~~~~~~~~~~~~~~~~~~~~~~ 127 (512)
|.+++++...+...+|+.+++++|++++|+++++.++..+. ..+..|++++..+.++++.|++|+|+.++..++.+.+.
T Consensus 1 p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~i~~~~-~~~~~~i~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~ 79 (342)
T TIGR00797 1 PAILANILQPLLGLVDTAFVGHLGPVDLAAVSLGSSVFMFL-FSILMGLGTATTALVAQAVGAGNYQRLGRQAQQSLLLA 79 (342)
T ss_pred ChHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHH-HHHHHHHHHhHHHHHHHHHCCCChHHHHHHHHHHHHHH
Confidence 78899999999999999999999999999999999988877 88899999999999999999999999999999999999
Q ss_pred HHHHHHHHHH-HHhhHHHHHHcCCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHH
Q 010345 128 LLISVPLALI-WANTESLLVAAHQDSEISKEAGLYARYMIPSIFAYAILQCLVRFLQTQNIVFPMVLSSGITALLHILVC 206 (512)
Q Consensus 128 ~~~~i~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~l~ 206 (512)
...+++.+++ .++.+++..+++.|++..+.+..+++++.++.++........+.+|+.||++.+...++.+.+++++++
T Consensus 80 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~i~~~ 159 (342)
T TIGR00797 80 LLLGLPVLLVGYFFIDPLLSLMGADGEVAELAQDYLRILILGIPAYLLNFVLRGFLRGQGDTKTPMYITLIGNVINIILN 159 (342)
T ss_pred HHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHh
Confidence 9999998877 778999998888788888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHH-hcC-CCcchhHHHHHHHHHHHHHHHHHHHHhCccccccccCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 010345 207 WILVF-KSG-LGSRGAALANSISYWINVLLLAIYVKFSSSCAKTWTGFSKEALNNVFNFVRLAIPSAVMVCLEMWSFEMM 284 (512)
Q Consensus 207 ~~li~-~~~-~g~~g~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 284 (512)
++++. .++ +|+.|+++++.+++.+..+...++.+|+++.+.++++..+.+++..|++++++.|..+++....+...++
T Consensus 160 ~~li~~~~g~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~P~~~~~l~~~~~~~~~ 239 (342)
T TIGR00797 160 YILIFGKFGFLGIVGAALATVISYWLMFLLLLYYIKKAKKIGLKWEGLLKPDWEVLKRLLKLGLPIAFRVILESLSFALL 239 (342)
T ss_pred HHHHhcCccccccHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccccccCCCHHHHHHHHHhCchHHHHHHHHHHHHHHH
Confidence 98886 456 7899999999999999998888777664444333322223356789999999999999999999999999
Q ss_pred HHHHhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 010345 285 VLLSGLLPNPALETSVLSISLNTASTVWMIPFGLSGAASTRVSNELGAGHPEAARLAVCVVLVMAVTEGILVGSVLILIR 364 (512)
Q Consensus 285 ~~~~~~l~~g~~~~a~~~~~~~i~~~~~~~~~~l~~a~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~ 364 (512)
+.+++.++ ++++++|+++.++.++...++.+++++..|.+++++++||.++.++..+++.++...++++..+++.+++
T Consensus 240 ~~i~~~~g--~~~v~~~~~a~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 317 (342)
T TIGR00797 240 ALLVARLG--SIALAAHQIALNVESLLFMPAFGFGIAVSILVGQALGAGDPKRAKEVARVALKLSLLLGLVLAIILILFR 317 (342)
T ss_pred HHHHHHcC--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998876 7799999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhccCcHhHHHHHHHHHHHH
Q 010345 365 NVWGYAYSNEIEVVKYVASMLPIL 388 (512)
Q Consensus 365 ~~i~~~~~~~~~~~~~~~~~l~i~ 388 (512)
+++.++|++|||+.+.+..++++.
T Consensus 318 ~~i~~~~~~~~~~~~~~~~~~~~~ 341 (342)
T TIGR00797 318 EFIARLFTNDPEVLELAAIYLIFV 341 (342)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHh
Confidence 999999999999999988888764
No 10
>PRK15099 O-antigen translocase; Provisional
Probab=100.00 E-value=1.6e-34 Score=289.34 Aligned_cols=405 Identities=13% Similarity=0.027 Sum_probs=344.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc-cChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccchHHHHH
Q 010345 42 QLWLSGPLISVSLLQFCLQMISVMFVGH-LGELPLSGASMATSFATVTGFSFLVGLSSALETLCGQSYGAKQYHMLGIHM 120 (512)
Q Consensus 42 i~~~~~p~~~~~~~~~~~~~i~~~~i~~-lg~~~~~~~~~~~~i~~~~~~~~~~gl~~~~~~~is~~~~~~~~~~~~~~~ 120 (512)
+.|.+.+...++++..+.+++...+++| +|++++|.++..+++..........|++++..+.++|+ ++|+|+.++.+
T Consensus 3 ~~k~~~~~~~~~~~~~~~~~l~~~i~ar~Lg~~~~G~~~~~~~~i~~~~~~~~~G~~~a~~~~ia~~--~~~~~~~~~~~ 80 (416)
T PRK15099 3 LAKASLWTAASTLVKIGAGLLVVKLLAVSFGPAGVGQAGNFRQLITVLGVLAGAGIFNGVTKYVAQY--HDQPQQLRAVV 80 (416)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHcCCccceeeeeHHhc--CCCHHHHHHHH
Confidence 5678889999999999999999999999 99999999999999999875666889999989999988 67888999999
Q ss_pred HHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCchhhHHHHHHHHH
Q 010345 121 QRGMFVLLLISVPLALI-WANTESLLVAAHQDSEISKEAGLYARYMIPSIFAYAILQCLVRFLQTQNIVFPMVLSSGITA 199 (512)
Q Consensus 121 ~~~~~~~~~~~i~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 199 (512)
++++.+....+++.+++ +++.+|+...+..+++. ..+..+..+..++..+.+...+.+|+.||++.++...+.+.
T Consensus 81 ~~~~~l~~~~~~i~~~~~~~~~~~i~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~~~~~~~~~~~ 156 (416)
T PRK15099 81 GTSSAMVLGFSTLLALVFLLAAAPISQGLFGHTDY----QGVVRAVALIQMGIAWANLLLAILKGFRDAAGNALSLIVGS 156 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998877 77888998877766642 24566666667777888899999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHhCccccccccCccHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 010345 200 LLHILVCWILVFKSGLGSRGAALANSISYWINVLLLAIYVKFSSSCAKTWTGFSKEALNNVFNFVRLAIPSAVMVCLEMW 279 (512)
Q Consensus 200 ~~~i~l~~~li~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 279 (512)
++|+.+ .++.+. ..|+.|+++|+.+++.+..+...++.+|+++.+.++.+.+. +++..|+++++|.|..+++....+
T Consensus 157 ~~~i~l-~i~~~~-~~Gv~Ga~iat~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~k~ll~~g~p~~~~~~~~~i 233 (416)
T PRK15099 157 LIGVAA-YYLCYR-LGGYEGALLGLALVPALVVLPAGIMLIRRGTIPLSYLKPSW-DNGLAGQLGKFTLMALITSVTLPV 233 (416)
T ss_pred HHHHHH-HHHHHH-HhcchHHHHHHHHHHHHHHHHHHHHHHHccceehHhhhccC-CHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999887 444432 34999999999999999888777766554432222212222 567889999999999999999999
Q ss_pred HHHHHHHHHh-cCCChhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHHH
Q 010345 280 SFEMMVLLSG-LLPNPALETSVLSISLNTAST-VWMIPFGLSGAASTRVSNELGAGHPEAARLAVCVVLVMAVTEGILVG 357 (512)
Q Consensus 280 ~~~~~~~~~~-~l~~g~~~~a~~~~~~~i~~~-~~~~~~~l~~a~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~~~~ 357 (512)
....++.+++ .++ ++++|.|+.+.|+.+. ...+..+++++..|.++++ +|+++.++..++..+....++.+.+
T Consensus 234 ~~~~~~~~l~~~~g--~~~vg~y~~a~~i~~~~~~~~~~~~~~a~~P~~s~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (416)
T PRK15099 234 AYVMMRNLLAAHYS--WDEVGIWQGVSSISDAYLQFITASFSVYLLPTLSRL---TEKRDITREIVKALKFVLPAVAAAS 308 (416)
T ss_pred HHHHHHHHHHhcCC--HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CChHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999996 665 7899999999999875 5889999999999999995 6789999999999999999999999
Q ss_pred HHHHHhhhhhhhhccCcHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccCcchhhHHHHHHHHHHhhHHHHHHHHHHh
Q 010345 358 SVLILIRNVWGYAYSNEIEVVKYVASMLPILAASNFLDGLQCVLSGIARGCGWQMIGAFVNLGSYYLVGIPSAILLAFLL 437 (512)
Q Consensus 358 ~~l~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l~~~l~~~~ 437 (512)
+++.++++++.+++.+|+ ++.+.+++++++++.++...+...+..+.+.++++.....++.. .++.+++++++. +
T Consensus 309 ~~~~l~a~~ii~l~~g~~--~~~~~~~~~~l~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~l~i~l~~~li--~ 383 (416)
T PRK15099 309 FTVWLLRDFAIWLLFSNK--FTAMRDLFAWQLVGDVLKVGAYVFGYLVIAKASLRFYILAEVSQ-FTLLTGFAHWLI--P 383 (416)
T ss_pred HHHHHHHHHHHHHhccHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH--H
Confidence 999999999999999876 56678899999999999988888888888888888777777776 788899999884 5
Q ss_pred cCCchhHHHHHHHHHHHHHHHHHHHHHH
Q 010345 438 HFGGRGLWLGIICALIVQATSLGIITAR 465 (512)
Q Consensus 438 ~~g~~G~~~a~~~~~~~~~~~~~~~~~~ 465 (512)
.+|..|+++++.+++.+...+..+...+
T Consensus 384 ~~G~~G~a~a~~is~~~~~~~~~~~~~~ 411 (416)
T PRK15099 384 LHGALGAAQAYMATYIVYFSLCCGVFLL 411 (416)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5799999999999999999887766654
No 11
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only]
Probab=100.00 E-value=1.1e-35 Score=294.39 Aligned_cols=446 Identities=46% Similarity=0.778 Sum_probs=423.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 010345 32 KKKIIEEVKRQLWLSGPLISVSLLQFCLQMISVMFVGHLGELPLSGASMATSFATVTGFSFLVGLSSALETLCGQSYGAK 111 (512)
Q Consensus 32 ~~~~~~~~~~i~~~~~p~~~~~~~~~~~~~i~~~~i~~lg~~~~~~~~~~~~i~~~~~~~~~~gl~~~~~~~is~~~~~~ 111 (512)
+++.+.+.|++++++.|..+..+.+...+.+++.++||+|+.++++.+++.+..+..+..+..|+..+..+..+|++|.+
T Consensus 20 ~~~~~~e~k~l~~ia~P~i~~~~~~~~~~~is~~f~GhlG~leLaa~sla~s~~n~~~~s~~~gl~~aletlcgQa~ga~ 99 (473)
T KOG1347|consen 20 FSQLVTESKELARLALPAILTFLAQPLLSLVSTAFAGHLGNLELASVSLANSFANITGVSILLGLQLALDTLCGQAFGAK 99 (473)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhccccchHHHHHHHHHHhhcccchHHhhccchhhhcchHhhhccc
Confidence 34447889999999999999999999999999999999999999999999999998778889999999999999999999
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCchhhH
Q 010345 112 QYHMLGIHMQRGMFVLLLISVPLALIWANTESLLVAAHQDSEISKEAGLYARYMIPSIFAYAILQCLVRFLQTQNIVFPM 191 (512)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 191 (512)
+++....+.+++..+....+++...++...++++..++.|+++...+..|.+...+..+.+........++|++++....
T Consensus 100 ~~~~lg~~lqrs~~~l~~~~~~~~~l~~~~~~il~~lgq~~~i~~~a~~y~~~~ip~~~a~~~~~~l~~~lq~Q~~~~~~ 179 (473)
T KOG1347|consen 100 KFTALGVYLQRSGIVLLVQGLPISLLILNSEPILLLLGQDPDISRDAGSYAFMLIPGLFSYAVSFPLAKFLQAQSITLPL 179 (473)
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhCCChhHHHHHhhhHhhhcchhhhhHHHHHHHHHHHhccCchHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHhCccccccccCccHHHHHHHHHHHHHHhhHH
Q 010345 192 VLSSGITALLHILVCWILVFKSGLGSRGAALANSISYWINVLLLAIYVKFSSSCAKTWTGFSKEALNNVFNFVRLAIPSA 271 (512)
Q Consensus 192 ~~~~~~~~~~~i~l~~~li~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 271 (512)
.+......++++.+++++++.+++|..|++++..+++.........+..... ....|..+..+ ++.++++++.++|.+
T Consensus 180 ~~~~~~~~~lhi~~~~llv~~~~~g~~Gaala~~~s~w~~~~~l~~yi~~~~-~~~~w~~~s~~-~~~~~~~~~lai~s~ 257 (473)
T KOG1347|consen 180 LVIGLVALVLHILLTWLLVSKLGLGIKGAALALVASYWLNVRILLLYAVLSG-CLAAWSGFSGE-FDSWGPFFALAIPSA 257 (473)
T ss_pred HHHHHHHHHHHHHHHHHhhhcccCCCccchHHHHHHHHHHHHHHHHHheecC-chhhhhhhhHh-hhhHHHHHHHhhcch
Confidence 9999999999999999999999999999999999999999999988886554 45566766665 889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHH
Q 010345 272 VMVCLEMWSFEMMVLLSGLLPNPALETSVLSISLNTASTVWMIPFGLSGAASTRVSNELGAGHPEAARLAVCVVLVMAVT 351 (512)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~l~~g~~~~a~~~~~~~i~~~~~~~~~~l~~a~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 351 (512)
++...+++.+.+..+..+.+++...++++.++..++....++++.+++.+...++++.+|+++++++|...+.+...+..
T Consensus 258 ~miclE~w~~eil~l~~G~l~np~~~~~~~sI~~~~~~~~~~~~~~~~~a~strv~neLGag~p~~ar~~~~v~~~~~~~ 337 (473)
T KOG1347|consen 258 VMICLEWWAYEILVLLAGLLGNAKVSLASQSICLEIGGWHLMIPGAFSAAVSTRVSNELGAGKPKRARVSAKVALQTSVA 337 (473)
T ss_pred heeHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHcCCChhhhhhHHHHHHHHHHH
Confidence 99999999999999999999987889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhhhhhccCcHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccCcchhhHHHHHHHHHHhhHHHHH
Q 010345 352 EGILVGSVLILIRNVWGYAYSNEIEVVKYVASMLPILAASNFLDGLQCVLSGIARGCGWQMIGAFVNLGSYYLVGIPSAI 431 (512)
Q Consensus 352 i~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l~~ 431 (512)
++...+..+...++.+..+|++|+|+.+...+..++++...++++.+.+..+..++.|+++...++++...+++++|...
T Consensus 338 ~g~~~~~~~~~~r~~~~~ift~~~ev~~~va~~~pll~~~~~~~~~q~v~~Gva~g~g~q~~ga~vnl~~yyl~G~p~g~ 417 (473)
T KOG1347|consen 338 IGASLGTTLLACREVLGQIFTNSKEVLDLVADLTPLLALSILLNALQAVLSGVARGSGWQQIGAVINLVAYYLVGAPVGL 417 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhccchhhhhheEEeeccccceEEEeeeeeeEecCccee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHhHH
Q 010345 432 LLAFLLHFGGRGLWLGIICALIVQATSLGIITARTNWEKEVSHSFYLF 479 (512)
Q Consensus 432 ~l~~~~~~g~~G~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (512)
.+.+..++|..|.|.+...+..+..........+.+|+++.+++..+.
T Consensus 418 ~l~~~~~~g~~glw~G~~~~~~~~~~~l~~~~~~tdW~~~~~~a~~~~ 465 (473)
T KOG1347|consen 418 YLGFFTKFGVKGLWIGILLGFSVQTLVLAIVTARTDWKNQAEKAFARI 465 (473)
T ss_pred EEEEEEecCceEEEeehHHHHHHHHHHHHHheeeccHHHHHHHHHHHH
Confidence 998878899999999999998888888888889999999999887764
No 12
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII []. Disruption of the MviN open reading frame results in flagellar structures that contain only the basal body and hook complex that lack the flagellum; suggesting that MviN might be involved in flagellin export or assembly []. Genome comparison studies led to MviN being predicted to be a peptidoglycan lipid II flippase though currently there is no direct evidence to support this annotation [].
Probab=100.00 E-value=2.3e-29 Score=252.18 Aligned_cols=387 Identities=20% Similarity=0.128 Sum_probs=336.0
Q ss_pred cCh-hhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHH
Q 010345 70 LGE-LPLSGASMATSFATVTGFSFL-VGLSSALETLCGQSYGAKQYHMLGIHMQRGMFVLLLISVPLALI-WANTESLLV 146 (512)
Q Consensus 70 lg~-~~~~~~~~~~~i~~~~~~~~~-~gl~~~~~~~is~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~i~~ 146 (512)
+|. ++..+|..+.++..++...+. .+++++..|..++.. ++|+|+.++..+..+.+....++.++++ .++++++..
T Consensus 5 fG~s~~~Daf~~A~~ip~~l~~l~~~gal~~~~IP~~~~~~-~~~~~~~~~f~~~~~~~~~~~~~~l~~l~~lfa~~iv~ 83 (451)
T PF03023_consen 5 FGASAEADAFFVAFTIPNFLRSLLAGGALSAAFIPVFSKAR-EKGEEEARRFISTLLTILLIISLLLTLLGILFAPPIVR 83 (451)
T ss_pred hcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 674 456689999999998844554 468999999999999 8899999999999998888888888877 778999998
Q ss_pred Hc--CCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHhcCCC---cchhH
Q 010345 147 AA--HQDSEISKEAGLYARYMIPSIFAYAILQCLVRFLQTQNIVFPMVLSSGITALLHILVCWILVFKSGLG---SRGAA 221 (512)
Q Consensus 147 ~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~l~~~li~~~~~g---~~g~~ 221 (512)
.+ +.+++..+.+.+.+++..+..++..+..+..+++|+++|...+....+...+..++...++. ...| +.+.+
T Consensus 84 ~la~g~~~~~~~la~~l~~i~~~~~~~~~l~~i~~a~L~~~~~F~~~~~~~l~~N~~~I~~~~~~~--~~~~~~~i~~la 161 (451)
T PF03023_consen 84 LLAPGFSPETIELAVQLLRILAPSILFIGLSSIFSAILNAHRRFLIPALSPLLFNLSIILSLLLLS--NSWGQENIYALA 161 (451)
T ss_pred HHCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHH--HhcCchHHHHHH
Confidence 87 45778889999999999999999999999999999999999999988887776555444433 3566 88899
Q ss_pred HHHHHHHHHHHHHHHHHHHhCccccccccCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHH
Q 010345 222 LANSISYWINVLLLAIYVKFSSSCAKTWTGFSKEALNNVFNFVRLAIPSAVMVCLEMWSFEMMVLLSGLLPNPALETSVL 301 (512)
Q Consensus 222 ~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~g~~~~a~~ 301 (512)
+|..++..+..++.....+|.+.. .+.+ ++ .+.+..|++++...|..+.....++...+++.+.+.++ +..++++
T Consensus 162 ~g~~~g~~~~~l~~l~~~~~~~~~-~~~~-~~-~~~~~~~~~~~~~~p~~l~~~~~qi~~lv~~~laS~l~--~G~vs~l 236 (451)
T PF03023_consen 162 WGVLIGAIIQFLIQLPYLRRFGFR-FRPK-FD-WRDPNLKRFLKLAIPLLLSSSISQINILVDRALASFLG--EGSVSAL 236 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCc-cccc-CC-CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC--ccHHHHH
Confidence 999999999999888888765432 1111 11 12356899999999999999999999999999999988 4589999
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccC----cHh
Q 010345 302 SISLNTASTVW-MIPFGLSGAASTRVSNELGAGHPEAARLAVCVVLVMAVTEGILVGSVLILIRNVWGYAYSN----EIE 376 (512)
Q Consensus 302 ~~~~~i~~~~~-~~~~~l~~a~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~i~~~~~~----~~~ 376 (512)
+.++++.+++. .+..+++++..|.++++..+||.++.++..+++++....+.+|+++++..+++++++++.. |+|
T Consensus 237 ~YA~~l~~lp~~i~~~~i~tv~~P~ls~~~~~~d~~~~~~~~~~~l~~~~~i~iP~~~~~~~~a~~iV~llf~rG~F~~~ 316 (451)
T PF03023_consen 237 NYAQRLYQLPLGIFAVSISTVVFPKLSRLAAEGDWEEFRKTLRKALRLILLILIPASIGLIVLAEPIVRLLFERGAFTAE 316 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHccCCCCHH
Confidence 99999999866 5677999999999999999999999999999999999999999999999999999999862 566
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccCcchhhHHHHHHHHHHhhHHHHHHHHHHhcCCchhHHHHHHHHHHHHH
Q 010345 377 VVKYVASMLPILAASNFLDGLQCVLSGIARGCGWQMIGAFVNLGSYYLVGIPSAILLAFLLHFGGRGLWLGIICALIVQA 456 (512)
Q Consensus 377 ~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l~~~l~~~~~~g~~G~~~a~~~~~~~~~ 456 (512)
..+.....+++++++.++.++.......+++.||+|.+++.+..+ .++++.+++.+ .+.+|..|+++++.++..+..
T Consensus 317 ~~~~ta~~l~~y~~~l~~~~l~~ll~r~fya~~~~~~~~~~~~~~-~~lni~l~~~l--~~~~g~~Glala~sl~~~i~~ 393 (451)
T PF03023_consen 317 DTQLTASALRIYALGLPFYALNDLLSRVFYALGDTKTPVRISVIS-VVLNIILSILL--VPFFGVAGLALATSLSAIISA 393 (451)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHccCcHhHHHHHHHH-HHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
Confidence 688889999999999999999999999999999999999999999 78999999877 456799999999999999999
Q ss_pred HHHHHHHHHcc
Q 010345 457 TSLGIITARTN 467 (512)
Q Consensus 457 ~~~~~~~~~~~ 467 (512)
++.+...+|+.
T Consensus 394 ~~l~~~l~r~~ 404 (451)
T PF03023_consen 394 LLLYILLRRRL 404 (451)
T ss_pred HHHHHHHHHHc
Confidence 99888888764
No 13
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only]
Probab=100.00 E-value=7.7e-28 Score=236.44 Aligned_cols=420 Identities=15% Similarity=0.054 Sum_probs=351.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cChh-hHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhCCCccchH
Q 010345 40 KRQLWLSGPLISVSLLQFCLQMISVMFVGH-LGEL-PLSGASMATSFATVTGFSFLV-GLSSALETLCGQSYGAKQYHML 116 (512)
Q Consensus 40 ~~i~~~~~p~~~~~~~~~~~~~i~~~~i~~-lg~~-~~~~~~~~~~i~~~~~~~~~~-gl~~~~~~~is~~~~~~~~~~~ 116 (512)
+.++|.+.-....++++.+.+++-..+++. +|+. ...+++++.++.+++--.+.. .++++..|...++..++++|+.
T Consensus 7 ~sllks~~~vs~~Tl~SRi~G~vRd~~iA~~fGa~~~aDAF~vAf~iPN~lRrlfaegafs~aFVPv~~~~~~~~~~~~~ 86 (518)
T COG0728 7 MSLLKSLIIVSSATLLSRILGFVRDVLIAAAFGAGAAADAFFVAFKLPNLLRRLFAEGAFSSAFVPVLAEAKKKEGEEAA 86 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHhHHHHHHHHhchhHhhhhhHHHHHHHHcchhhHH
Confidence 566777777888888889999998888888 9974 567899999999986544444 4699999999999988888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcC-C--CHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCchhhHH
Q 010345 117 GIHMQRGMFVLLLISVPLALI-WANTESLLVAAH-Q--DSEISKEAGLYARYMIPSIFAYAILQCLVRFLQTQNIVFPMV 192 (512)
Q Consensus 117 ~~~~~~~~~~~~~~~i~~~~~-~~~~~~i~~~~~-~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 192 (512)
++..+........+.+.++++ .++.+++.+... . |++....+....+++.+..++..+.....+.+++.+|...+.
T Consensus 87 ~~f~~~v~~~l~~~ll~vt~L~~l~~p~iv~~~~~~g~~~~~~~~a~~l~~i~~Pyl~~isL~al~~aiLNs~~~F~~~a 166 (518)
T COG0728 87 RFFSRLVTGLLTLVLLLVTLLGILFAPWLVRLLLAPGFDETDKFLAVLLTRILFPYLLFISLSALFGAILNSRNRFFIPA 166 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCeechhh
Confidence 888888776777777777777 667777774443 2 233333688888999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHhCccccccccCccHHHHHHHHHHHHHHhhHHH
Q 010345 193 LSSGITALLHILVCWILVFKSGLGSRGAALANSISYWINVLLLAIYVKFSSSCAKTWTGFSKEALNNVFNFVRLAIPSAV 272 (512)
Q Consensus 193 ~~~~~~~~~~i~l~~~li~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 272 (512)
+..+..++.-+.....+....+....+.++++.++-+...+..+..++|.+...+....+ +.+..|++.+...|..+
T Consensus 167 ~aPvl~Nv~~I~~~l~~~~~~~~~~~~La~gvl~Gg~~Q~l~~lp~l~~~g~~~~p~~~~---~~~~lk~~~~~~~p~~l 243 (518)
T COG0728 167 FAPVLLNVSVIGLALFLGPYFDPPLLALAWGVLIGGLLQLLVQLPALRKAGLLIKPRFGF---KDPGLKRFLKLMLPALL 243 (518)
T ss_pred hhHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcccccCCCCCC---CchhHHHHHHHHHHHHH
Confidence 999888776664444444322223568899999999999999999998765322211111 22678999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHH
Q 010345 273 MVCLEMWSFEMMVLLSGLLPNPALETSVLSISLNTASTVW-MIPFGLSGAASTRVSNELGAGHPEAARLAVCVVLVMAVT 351 (512)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~l~~g~~~~a~~~~~~~i~~~~~-~~~~~l~~a~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 351 (512)
.....+++..+|+.+.+.+.+ -.++.+..++++++++. .+..+++++..|.++++.+++|.++.++..+++++.++.
T Consensus 244 ~~sisQi~lli~~~iAS~l~~--Gsis~l~YA~rl~qlPlGifgvai~tvllP~lSr~~~~~~~~~~~~~l~~~i~l~ll 321 (518)
T COG0728 244 GVSISQINLLIDTAIASFLAE--GSVSWLYYADRLYQLPLGIFGVALSTVLLPSLSRHAANGDWPEFLKLLDWGLRLTLL 321 (518)
T ss_pred HHHHHHHHHHHHHHHHHhhcc--ccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHH
Confidence 999999999999999999984 48999999999999966 788899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhhhhhccC----cHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccCcchhhHHHHHHHHHHhhH
Q 010345 352 EGILVGSVLILIRNVWGYAYSN----EIEVVKYVASMLPILAASNFLDGLQCVLSGIARGCGWQMIGAFVNLGSYYLVGI 427 (512)
Q Consensus 352 i~~~~~~~l~~~~~~i~~~~~~----~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i 427 (512)
+++|.++++..+++|+.+++.. +++......+.+..++.+.++..+..+....+++.+|+|.|+++++++ .++++
T Consensus 322 l~lP~~~~l~~la~piv~~Lf~rG~F~~~d~~~ta~~L~~y~~gL~~~~L~~ll~~~FYAr~d~ktP~~i~ii~-~~~n~ 400 (518)
T COG0728 322 LTLPASAGLLVLAEPIVSLLFERGAFTAEDVLMTAEALAAYSLGLIPFALVKLLSRVFYAREDTKTPMKIAIIS-LVVNI 400 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHccCCCcChHHHHHH-HHHHH
Confidence 9999999999999999999853 355577788999999999999999999999999999999999999999 78999
Q ss_pred HHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHcc
Q 010345 428 PSAILLAFLLHFGGRGLWLGIICALIVQATSLGIITARTN 467 (512)
Q Consensus 428 ~l~~~l~~~~~~g~~G~~~a~~~~~~~~~~~~~~~~~~~~ 467 (512)
.++..+ .+.+|..|.+.+..++.++.+.+.++..+|+.
T Consensus 401 ~l~~~l--~~~~~~~giala~s~a~~~~~~ll~~~l~k~~ 438 (518)
T COG0728 401 LLNLLL--IPPLGHVGLALATSLAAWVNALLLYYLLRKRL 438 (518)
T ss_pred HHHHHH--HhhccchHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999666 55679999999999999888888888877754
No 14
>PRK10459 colanic acid exporter; Provisional
Probab=99.98 E-value=1.5e-27 Score=244.54 Aligned_cols=397 Identities=11% Similarity=0.063 Sum_probs=319.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccchHHH
Q 010345 40 KRQLWLSGPLISVSLLQFCLQMISVMFVGH-LGELPLSGASMATSFATVTGFSFLVGLSSALETLCGQSYGAKQYHMLGI 118 (512)
Q Consensus 40 ~~i~~~~~p~~~~~~~~~~~~~i~~~~i~~-lg~~~~~~~~~~~~i~~~~~~~~~~gl~~~~~~~is~~~~~~~~~~~~~ 118 (512)
++..+.+.+..+++....+.+++...+++| +||+++|.++.+..+.++.......|++++.. |. +|.+ ++
T Consensus 5 ~~~~~g~~w~~~~~~~~~~~~~i~~~ilaR~L~p~~~G~~~~~~~~~~~~~~~~~~Gl~~aii----~~---~~~~--~~ 75 (492)
T PRK10459 5 EKTISGAKWTAISTVIIIGLQLVQLTVLARILDNHQFGLLTMSLVIIGFADTLSDMGIGASII----QR---QDIS--HL 75 (492)
T ss_pred HHHHccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHccHHHHHHHHHHHHHHHHHcCHHHHHH----hc---ccCC--HH
Confidence 667788899999999999999999999999 99999999999999999886677778888653 21 1211 23
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCchhhHHHHHHH
Q 010345 119 HMQRGMFVLLLISVPLALI-WANTESLLVAAHQDSEISKEAGLYARYMIPSIFAYAILQCLVRFLQTQNIVFPMVLSSGI 197 (512)
Q Consensus 119 ~~~~~~~~~~~~~i~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 197 (512)
...+.+.+....++++.++ +.+.+++...+ ++|+. ...+++..+..++..+.....+.+++.++.+.....+..
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~r~~~f~~~a~~~~~ 150 (492)
T PRK10459 76 QLSTLYWLNVGLGIVVFVLVFLLSPLIADFY-HNPEL----APLIKTLSLAFVIIPIGQQFRALLQKELEFNKLAKIEIS 150 (492)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CChhh----HHHHHHHHHHHHHHHHhhHHHHHHHHHhhhHHHHHHHHH
Confidence 4455666677777766665 44555554444 44443 345677778888888888899999999999999998888
Q ss_pred HHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHhCccccccccCccHHHHHHHHHHHHHHhhHHHHHHHH
Q 010345 198 TALLHILVCWILVFKSGLGSRGAALANSISYWINVLLLAIYVKFSSSCAKTWTGFSKEALNNVFNFVRLAIPSAVMVCLE 277 (512)
Q Consensus 198 ~~~~~i~l~~~li~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 277 (512)
..+...+..+.+.. .+.|+.+.+++..+++.+..+......+++ .++++ + .+++..|++++++.|...++...
T Consensus 151 ~~i~~~~~~i~~~~-~~~g~~~l~~~~~~~~~~~~l~~~~~~~~~--~~~~~---~-~~~~~~k~ll~~~~~~~~~~~~~ 223 (492)
T PRK10459 151 AVVAGFTFAVVSAF-FWPGALAAILGYLVNSSVRTLLFGYFGRKI--YRPAL---H-FSLASVKPNLSFGAWQTAERIIN 223 (492)
T ss_pred HHHHHHHHHHHHHH-HCCcHHHHHHHHHHHHHHHHHHHHHHhccc--CCccc---e-ecHHHHHHHHhhhHHHHHHHHHH
Confidence 88877777766554 478999999999999887766543333221 11111 1 13567899999999999999999
Q ss_pred HHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHH
Q 010345 278 MWSFEMMVLLSGLLPNPALETSVLSISLNTASTVW-MIPFGLSGAASTRVSNELGAGHPEAARLAVCVVLVMAVTEGILV 356 (512)
Q Consensus 278 ~~~~~~~~~~~~~l~~g~~~~a~~~~~~~i~~~~~-~~~~~l~~a~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~~~ 356 (512)
.+....|+.+++.+.+ ++++|.|+.+.++.+++. .+...++++..|.+++. ++|.++.++..++..++...+++|+
T Consensus 224 ~~~~~~d~~~lg~~lg-~~~vG~Y~~A~~l~~~~~~~i~~~i~~v~~P~~s~~--~~~~~~~~~~~~~~~~~~~~~~~p~ 300 (492)
T PRK10459 224 YLNTNIDTILIGRILG-AEVLGGYNLAYNVATVPPMKINPIITRVAFPVFAKI--QDDTEKLRVGFLKLLSVLGIINFPL 300 (492)
T ss_pred HHHhcCchhhhhHhhc-hHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHh--cCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999988763 889999999999998754 45556888999999885 6788999999999999999999999
Q ss_pred HHHHHHhhhhhhhhccCcHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccCcchhhHHHHHHHHHHhhHHHHHHHHHH
Q 010345 357 GSVLILIRNVWGYAYSNEIEVVKYVASMLPILAASNFLDGLQCVLSGIARGCGWQMIGAFVNLGSYYLVGIPSAILLAFL 436 (512)
Q Consensus 357 ~~~l~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l~~~l~~~ 436 (512)
.+++.++++++..++.+++ ++.+...++++++..++..+.......+++.||+|..++.++.. .++.+|..+.+.
T Consensus 301 ~~~l~~~a~~ii~ll~g~~--~~~a~~~l~il~~~~~~~~~~~~~~~~l~a~g~~~~~~~~~~~~-~~~~i~~~~~~~-- 375 (492)
T PRK10459 301 LLGLMVVSNNFVPLVFGEK--WNSAIPILQLLCIVGLLRSVGNPIGSLLLAKGRADLSFKWNVFK-TFLFIPAIVIGG-- 375 (492)
T ss_pred HHHHHHHhHHHHHHhcChh--HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhHHHHHHH-HHHHHHHHHHHH--
Confidence 9999999999999988765 67789999999999999999999999999999999999999888 577777776664
Q ss_pred hcCCchhHHHHHHHHHHHHHHHHHHHHHH
Q 010345 437 LHFGGRGLWLGIICALIVQATSLGIITAR 465 (512)
Q Consensus 437 ~~~g~~G~~~a~~~~~~~~~~~~~~~~~~ 465 (512)
+.+|..|+++++.+++.+...+..+..+|
T Consensus 376 ~~~G~~g~a~a~~i~~~~~~~~~~~~~~~ 404 (492)
T PRK10459 376 QLAGLIGVALGFLLVQIINTILSYFLMIK 404 (492)
T ss_pred hhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45799999999999999988877776644
No 15
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]
Probab=99.96 E-value=2.3e-25 Score=227.93 Aligned_cols=404 Identities=18% Similarity=0.147 Sum_probs=316.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccchH
Q 010345 38 EVKRQLWLSGPLISVSLLQFCLQMISVMFVGH-LGELPLSGASMATSFATVTGFSFLVGLSSALETLCGQSYGAKQYHML 116 (512)
Q Consensus 38 ~~~~i~~~~~p~~~~~~~~~~~~~i~~~~i~~-lg~~~~~~~~~~~~i~~~~~~~~~~gl~~~~~~~is~~~~~~~~~~~ 116 (512)
..+++.|.+.....+++...+.+++....++| +|++++|.++.+.++.++.......|++.+..+.++++.++++++..
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lar~lg~~~~G~~~~~~~~~~~~~~i~~~G~~~ai~r~ia~~~~~~~~~~~ 83 (480)
T COG2244 4 LKKKLIKGALWLLLGTLISALLGLITIPLLARLLGPEGFGLYALALAIIGLFSILADFGLPAAITREIAEYREKGEYLLL 83 (480)
T ss_pred HHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhCcccceeeehHHHHHHHHHHHHHcCCcHHHHHHHHHhhcccHHHHH
Confidence 34788889999999999999999999999999 99999999999999999986777799999999999998766555555
Q ss_pred HHH-HHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCchhhHHHHH
Q 010345 117 GIH-MQRGMFVLLLISVPLALIWANTESLLVAAHQDSEISKEAGLYARYMIPSIFAYAILQCLVRFLQTQNIVFPMVLSS 195 (512)
Q Consensus 117 ~~~-~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 195 (512)
... ...........+.+.........+. ++ .....++......+.........+.+|+.++.+......
T Consensus 84 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~------~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (480)
T COG2244 84 ILLSVLLLLLLALILLLLLLLIAYLLAPI------DP----VLALLLRILSLALLLLPLSSVLRGLFQGFGRFGPLALSI 153 (480)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccc------Ch----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHH
Confidence 544 4444444444444333332222222 12 233446778899999999999999999999999998884
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHhCccccccccCccHHHHHHHHHHHHHHhhHHHHHH
Q 010345 196 GITALLHILVCWILVFKSGLGSRGAALANSISYWINVLLLAIYVKFSSSCAKTWTGFSKEALNNVFNFVRLAIPSAVMVC 275 (512)
Q Consensus 196 ~~~~~~~i~l~~~li~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 275 (512)
+.+ ..-+...+.+. +.......++...+..........+.+++++... +...+. .++..|+.+++++|..+++.
T Consensus 154 ~~~-~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~l~~~~p~~~~~~ 227 (480)
T COG2244 154 VSS-IFLLAAVFALL---FAALGLAVWALVLGAVVSLLVLLILLGKKKRGLK-RPILRF-SLALLKELLRFGLPLLLSSL 227 (480)
T ss_pred HHH-HHHHHHHHHHH---HHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcc-ccccCc-hhHHHHHHHHHhhHHHHHHH
Confidence 444 21122222222 2345566666677776666665555542221111 111111 46889999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHH
Q 010345 276 LEMWSFEMMVLLSGLLPNPALETSVLSISLNTASTVWMIPFGLSGAASTRVSNELGAGHPEAARLAVCVVLVMAVTEGIL 355 (512)
Q Consensus 276 ~~~~~~~~~~~~~~~l~~g~~~~a~~~~~~~i~~~~~~~~~~l~~a~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~~ 355 (512)
...+....|+.++++.- |++++|.|+.+.++......+..+++++..|.+++..+++|.++.++..++..++...+++|
T Consensus 228 ~~~l~~~~D~~~i~~~l-~~~~vG~Y~~a~~i~~~~~~~~~~l~~~l~P~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~p 306 (480)
T COG2244 228 LNFLFTNIDTLLLGLFL-GPAQVGIYSAAQRLVSLLLIVASALNRVLFPALSRAYAEGDRKALKKLLRQSLKLLLLISIP 306 (480)
T ss_pred HHHHHHHHHHHHHHHHh-hhhHheecccccHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999887 38899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhhhhhccCcHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccCcchhhHHHHHHHHHHhhHHHHHHHHH
Q 010345 356 VGSVLILIRNVWGYAYSNEIEVVKYVASMLPILAASNFLDGLQCVLSGIARGCGWQMIGAFVNLGSYYLVGIPSAILLAF 435 (512)
Q Consensus 356 ~~~~l~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l~~~l~~ 435 (512)
..+++..+++++..++.+++ +..+...+.++++..++.+........+++.|+++..++.+..+ .+.++.+++.+
T Consensus 307 ~~~~l~~~~~~~i~~~fg~~--~~~~~~~l~il~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~-~i~~~~l~~~l-- 381 (480)
T COG2244 307 ALLGLLLLAPPIITLLFGEK--YASAAPILQLLALAGLFLSLVSLTSSLLQALGKQRLLLLISLIS-ALLNLILNLLL-- 381 (480)
T ss_pred HHHHHHHHHhhhheeecCCc--ccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCcchhhHHHHHHH-HHHHHHHHhHH--
Confidence 99999999999999998866 44488899999999999999999999999999999999999998 58888888888
Q ss_pred HhcCCchhHHHHHHHHHHHHHHHHHHHHH
Q 010345 436 LLHFGGRGLWLGIICALIVQATSLGIITA 464 (512)
Q Consensus 436 ~~~~g~~G~~~a~~~~~~~~~~~~~~~~~ 464 (512)
.+.+|..|+..++ .+.........+..+
T Consensus 382 i~~~g~~g~~~a~-~~~~~~~~~~~~~~~ 409 (480)
T COG2244 382 IPRFGLIGAAIAT-ASVIALALLLFYILR 409 (480)
T ss_pred HHhhhhhhHHHHH-HHHHHHHHHHHHHHH
Confidence 5567999999998 443333333333333
No 16
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]
Probab=99.90 E-value=9.4e-21 Score=189.96 Aligned_cols=209 Identities=23% Similarity=0.228 Sum_probs=200.3
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCh
Q 010345 256 ALNNVFNFVRLAIPSAVMVCLEMWSFEMMVLLSGLLPNPALETSVLSISLNTASTVWMIPFGLSGAASTRVSNELGAGHP 335 (512)
Q Consensus 256 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~g~~~~a~~~~~~~i~~~~~~~~~~l~~a~~~~~~~~~g~~~~ 335 (512)
.++..|+++++++|..++++.......+|+.++++++ ++++|+-++++++..++..+..+++.+..+.++|++|+||+
T Consensus 12 ~~~~~k~l~~la~P~i~~~l~~~l~~~vD~~~vG~~~--~~alaav~la~~i~~~~~~~~~gl~~g~~~liaq~~Ga~~~ 89 (455)
T COG0534 12 FKKILKLLLKLAIPIILGNLLQTLYGLVDTFMVGHLG--AEALAAVGLANPIFFLIIAIFIGLGTGTTVLVAQAIGAGDR 89 (455)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCch
Confidence 3567899999999999999999999999999999998 88999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCcHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccCcchhhH
Q 010345 336 EAARLAVCVVLVMAVTEGILVGSVLILIRNVWGYAYSNEIEVVKYVASMLPILAASNFLDGLQCVLSGIARGCGWQMIGA 415 (512)
Q Consensus 336 ~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 415 (512)
+++++..+++...+..++++..++.+.+++++..++.+++|+.+.+.+|+++..++.++..++....+.+++.||+|.++
T Consensus 90 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~m 169 (455)
T COG0534 90 KKAKRVLGQGLLLALLLGLLLAILLLFFAEPLLRLLGAPAEVLELAAEYLRIILLGAPFALLSFVLSGILRGLGDTKTPM 169 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhH
Confidence 99999999999999999999999999999999999999888999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhHHHHHHHHHH-hc-CCchhHHHHHHHHHHHHHHHHHHHHHHcc
Q 010345 416 FVNLGSYYLVGIPSAILLAFL-LH-FGGRGLWLGIICALIVQATSLGIITARTN 467 (512)
Q Consensus 416 ~~~~~~~~~~~i~l~~~l~~~-~~-~g~~G~~~a~~~~~~~~~~~~~~~~~~~~ 467 (512)
+.++++ .++|+++.+++.+. ++ +|+.|+++|+.+++.+..++..+++.|++
T Consensus 170 ~~~~~~-~~lNivln~llI~g~~g~lGv~GAA~AT~ia~~~~~~~~~~~~~~~~ 222 (455)
T COG0534 170 YILLLG-NLLNIVLNYLLIFGLFGGLGVAGAALATVIARWIGALLLLIYLLRKK 222 (455)
T ss_pred HHHHHH-HHHHHHhhHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999 79999999999877 45 99999999999999999999988888765
No 17
>PRK10367 DNA-damage-inducible SOS response protein; Provisional
Probab=99.89 E-value=4.6e-20 Score=185.00 Aligned_cols=207 Identities=16% Similarity=0.107 Sum_probs=193.5
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChH
Q 010345 257 LNNVFNFVRLAIPSAVMVCLEMWSFEMMVLLSGLLPNPALETSVLSISLNTASTVWMIPFGLSGAASTRVSNELGAGHPE 336 (512)
Q Consensus 257 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~g~~~~a~~~~~~~i~~~~~~~~~~l~~a~~~~~~~~~g~~~~~ 336 (512)
++..|++++.++|..+++........+|+.+++++++ ++++|+.+++.++..+...+..+++.+..+.++|++|+||+|
T Consensus 5 ~~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~l~g-~~alAa~~l~~~i~~~~~~~~~~~~~g~~~lvsq~~Ga~~~~ 83 (441)
T PRK10367 5 TSSDKALWRLALPMIFSNITVPLLGLVDTAVIGHLDS-PVYLGGVAVGATATSFLFMLLLFLRMSTTGLTAQAFGAKNPQ 83 (441)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHH
Confidence 3568899999999999999999999999999999862 778999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCcHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccCcchhhHH
Q 010345 337 AARLAVCVVLVMAVTEGILVGSVLILIRNVWGYAYSNEIEVVKYVASMLPILAASNFLDGLQCVLSGIARGCGWQMIGAF 416 (512)
Q Consensus 337 ~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~ 416 (512)
++++..++++.++...+++..+....+.+++..+++.|+|+.+.+.+|+++.+++.++..+.......+++.||+|.+++
T Consensus 84 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ll~~~g~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~~~ 163 (441)
T PRK10367 84 ALARALVQPLLLALGAGALIALLRTPLIDLALHIVGGSEAVLEQARRFLEIRWLSAPASLANLVLLGWLLGVQYARAPVI 163 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHH
Confidence 99999999999999999999888888999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHH
Q 010345 417 VNLGSYYLVGIPSAILLAFLLHFGGRGLWLGIICALIVQATSLGIITAR 465 (512)
Q Consensus 417 ~~~~~~~~~~i~l~~~l~~~~~~g~~G~~~a~~~~~~~~~~~~~~~~~~ 465 (512)
.++++ .++++++.+++.+.+++|+.|+++|+.+++.+..++..+++++
T Consensus 164 ~~ii~-~~vni~l~~~lI~~~~lGv~Gaa~At~is~~~~~i~~~~~~~~ 211 (441)
T PRK10367 164 LLVVG-NILNIVLDLWLVMGLHMNVQGAALATVIAEYATLLIGLLMVRK 211 (441)
T ss_pred HHHHH-HHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999 6889999999988778999999999999999988776665554
No 18
>PRK10189 MATE family multidrug exporter; Provisional
Probab=99.88 E-value=3.7e-20 Score=187.44 Aligned_cols=204 Identities=16% Similarity=0.101 Sum_probs=190.5
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHH
Q 010345 258 NNVFNFVRLAIPSAVMVCLEMWSFEMMVLLSGLLPNPALETSVLSISLNTASTVWMIPFGLSGAASTRVSNELGAGHPEA 337 (512)
Q Consensus 258 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~g~~~~a~~~~~~~i~~~~~~~~~~l~~a~~~~~~~~~g~~~~~~ 337 (512)
+..|++++.++|..+++........+|+.++++++ ++++|++++++++..+...+..+++++..+.++|++|+||+|+
T Consensus 26 ~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~lG--~~alAA~~i~~~i~~~~~~~~~gl~~g~~~lvsq~~Ga~~~~~ 103 (478)
T PRK10189 26 LFWREITPLAVPIFIENLCVLLMGVLSTFLVSWLG--KEAMAGVGLADSFNMVIMAFFAAIDLGTTVVVAFSLGKRDRRR 103 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHH
Confidence 45899999999999999999999999999999987 7899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcc--CcHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccCcchhhH
Q 010345 338 ARLAVCVVLVMAVTEGILVGSVLILIRNVWGYAYS--NEIEVVKYVASMLPILAASNFLDGLQCVLSGIARGCGWQMIGA 415 (512)
Q Consensus 338 ~~~~~~~~~~~~~~i~~~~~~~l~~~~~~i~~~~~--~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 415 (512)
+++..+.+..++..++++.+++.+++++++..++. .|+|+.+.+.+++++..++.++..+.....+++++.||++.++
T Consensus 104 ~~~~~~~~l~~~~~~~~~~~~l~~~~~~~ll~l~~~~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~~ 183 (478)
T PRK10189 104 ARAAARQSLVIMTLFAVLLAVLIHFFGEQIIDLVAGDATPEVKALALTYLELTVWSYPAAAITLIGSGALRGAGNTKIPL 183 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHhH
Confidence 99999999999999999999999999999999995 6899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhHHHHHHHHHH----hcCCchhHHHHHHHHHHHHHHHHHHHHH
Q 010345 416 FVNLGSYYLVGIPSAILLAFL----LHFGGRGLWLGIICALIVQATSLGIITA 464 (512)
Q Consensus 416 ~~~~~~~~~~~i~l~~~l~~~----~~~g~~G~~~a~~~~~~~~~~~~~~~~~ 464 (512)
..++.. .++++++.+.+.+. +++|+.|+|+|+.+++.+..++..+.+.
T Consensus 184 ~i~~~~-~~~ni~l~~~li~g~~~~~~lGv~Gaa~At~is~~~~~~~~~~~~~ 235 (478)
T PRK10189 184 LINGGM-NILNIIISSILIYGLFSWQGLGFVGAGLGLTISRYIGAVAIIWVLM 235 (478)
T ss_pred HHHHHH-HHHHHHHhHHHHhcCCCCCccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999987 78899999888753 4789999999999999998887665554
No 19
>PRK00187 multidrug efflux protein NorA; Provisional
Probab=99.88 E-value=4.7e-20 Score=186.65 Aligned_cols=206 Identities=17% Similarity=0.045 Sum_probs=187.9
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCh
Q 010345 256 ALNNVFNFVRLAIPSAVMVCLEMWSFEMMVLLSGLLPNPALETSVLSISLNTASTVWMIPFGLSGAASTRVSNELGAGHP 335 (512)
Q Consensus 256 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~g~~~~a~~~~~~~i~~~~~~~~~~l~~a~~~~~~~~~g~~~~ 335 (512)
+++..|++++.++|.+++++...+...+|+.++++++ ++++++++++.++..+...+..+++++..|.++|++|++|+
T Consensus 5 ~~~~~k~il~~a~P~~~~~~~~~~~~~~d~~~v~~lg--~~alAa~~i~~~i~~~~~~~~~gl~~~~~~i~aq~~Ga~~~ 82 (464)
T PRK00187 5 PTTELKAILRLAGPLIASQLAHMLMVFTDTLMMGRLG--PEALAGGGLGAASYSFVSIFCVGVIAAVGTLVAIRHGAGDI 82 (464)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCh
Confidence 3577999999999999999999999999999999987 77999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCcHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccCcchhhH
Q 010345 336 EAARLAVCVVLVMAVTEGILVGSVLILIRNVWGYAYSNEIEVVKYVASMLPILAASNFLDGLQCVLSGIARGCGWQMIGA 415 (512)
Q Consensus 336 ~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 415 (512)
+++++..+.+..+...++++..+++. +.+++..++..|+|+.+.+.+++++.+++.++..+.....+.+++.||++.++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~il~l~~~~~ev~~~~~~Yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~ 161 (464)
T PRK00187 83 EGATRLAQAGLWLAWLLALVAALLLW-NLKPLLLLFGQAPQNVDAAMQFLHLLPFALPGYLSFMALRGFTSALGRAGPVM 161 (464)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHH
Confidence 99999999999999999998877655 67999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhHHHHHHHHHH----hcCCchhHHHHHHHHHHHHHHHHHHHHHH
Q 010345 416 FVNLGSYYLVGIPSAILLAFL----LHFGGRGLWLGIICALIVQATSLGIITAR 465 (512)
Q Consensus 416 ~~~~~~~~~~~i~l~~~l~~~----~~~g~~G~~~a~~~~~~~~~~~~~~~~~~ 465 (512)
+.++.+ .++++++++++.+. |++|+.|+++++.+++....+...+++++
T Consensus 162 ~~~~~~-~~~ni~~~~~lIfg~~g~p~~Gv~Gaalat~i~~~~~~~~~~~~~~~ 214 (464)
T PRK00187 162 VISLAG-AVANLLLNYALIEGWFGLPKLGLMGIGLVTALVSNGMALALALYIRR 214 (464)
T ss_pred HHHHHH-HHHHHHHHHHHHcCCCCCccccccchHHHHHHHHHHHHHHHHHHHHh
Confidence 999998 68899999887543 35899999999999988777655554444
No 20
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed
Probab=99.88 E-value=5.8e-20 Score=185.65 Aligned_cols=207 Identities=15% Similarity=0.062 Sum_probs=194.2
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChH
Q 010345 257 LNNVFNFVRLAIPSAVMVCLEMWSFEMMVLLSGLLPNPALETSVLSISLNTASTVWMIPFGLSGAASTRVSNELGAGHPE 336 (512)
Q Consensus 257 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~g~~~~a~~~~~~~i~~~~~~~~~~l~~a~~~~~~~~~g~~~~~ 336 (512)
++..|++++.++|..+++....+...+|+.+++++. |+++++++++++++..+...+..+++.+..+.++|++|+||+|
T Consensus 8 ~~~~k~i~~l~~P~~~~~l~~~l~~~~d~~~lg~~~-g~~~laa~~~~~~~~~~~~~~~~~~~~g~~~lvsq~~Ga~~~~ 86 (453)
T PRK09575 8 QSIYRTFWRYTIPSIAAMLVNGLYQIVDGIFIGHYV-GAEGLAGINMAWPVIGIILGIGLMVGMGTGSLLSIKRGEGDLE 86 (453)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-cHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCHH
Confidence 466799999999999999999999999999999973 2789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCcHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccCcchhhHH
Q 010345 337 AARLAVCVVLVMAVTEGILVGSVLILIRNVWGYAYSNEIEVVKYVASMLPILAASNFLDGLQCVLSGIARGCGWQMIGAF 416 (512)
Q Consensus 337 ~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~ 416 (512)
+.++..+++..++..++++.+++...+++++..++..|+|+.+.+.+++++.+++.++..+.......+++.||++.++.
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~l~~~~~~~~~~~~~yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~~ 166 (453)
T PRK09575 87 KAKRILTTGLLLLLLLGPIVSVILFLFADDFLRAQGAEGRTLELALQYIQVLIWGCLFTLGAIALPFLLRNDESPNLATG 166 (453)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHH
Q 010345 417 VNLGSYYLVGIPSAILLAFLLHFGGRGLWLGIICALIVQATSLGIITAR 465 (512)
Q Consensus 417 ~~~~~~~~~~i~l~~~l~~~~~~g~~G~~~a~~~~~~~~~~~~~~~~~~ 465 (512)
.++.+ .++++++.+++.+.+++|+.|+++++.+++.+..++..+++++
T Consensus 167 ~~~~~-~~~ni~l~~~li~~~~~Gi~Gaa~At~is~~~~~~~~~~~~~~ 214 (453)
T PRK09575 167 LMVIG-ALINIVLDYLFIGWLDWGLTGAAIATALAQLVVTVLGLGYFFS 214 (453)
T ss_pred HHHHH-HHHHHHhhHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 99998 6899999999988778999999999999999998887666554
No 21
>PRK01766 multidrug efflux protein; Reviewed
Probab=99.87 E-value=2.4e-19 Score=181.93 Aligned_cols=209 Identities=19% Similarity=0.112 Sum_probs=193.5
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCh
Q 010345 256 ALNNVFNFVRLAIPSAVMVCLEMWSFEMMVLLSGLLPNPALETSVLSISLNTASTVWMIPFGLSGAASTRVSNELGAGHP 335 (512)
Q Consensus 256 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~g~~~~a~~~~~~~i~~~~~~~~~~l~~a~~~~~~~~~g~~~~ 335 (512)
.++..|+++++++|..+++....+...+|..++++++ ++++++++++.++..+...+..+++.+..|.+++++|++|+
T Consensus 7 ~~~~~~~il~~~~P~~~~~~~~~~~~~~d~~~i~~~g--~~~laa~~~~~~~~~~~~~~~~g~~~a~~~~vs~~~g~~~~ 84 (456)
T PRK01766 7 YKSEARQLLALALPILLAQVAQTAMGFVDTVMAGGVS--ATDLAAVAIGTSIWLPVILFGHGLLLALTPIVAQLNGAGRR 84 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCh
Confidence 4677999999999999999999999999999999987 77899999999998888889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCcHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccCcchhhH
Q 010345 336 EAARLAVCVVLVMAVTEGILVGSVLILIRNVWGYAYSNEIEVVKYVASMLPILAASNFLDGLQCVLSGIARGCGWQMIGA 415 (512)
Q Consensus 336 ~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 415 (512)
++.++..+.+..+++.++++.+++++.+++++..++..|+|+.+.+..++++.+++.++..+.....+.+++.||++.++
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~yl~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 164 (456)
T PRK01766 85 ERIAHQVRQGLWLALFLSVLIMLVLYNAVPPILNMMNLEPEVADIAVGYLHALLWGIPAYLLYQVLRSFIDGLGKTKPTM 164 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhHHHHHHHHHH----hcCCchhHHHHHHHHHHHHHHHHHHHHHHcc
Q 010345 416 FVNLGSYYLVGIPSAILLAFL----LHFGGRGLWLGIICALIVQATSLGIITARTN 467 (512)
Q Consensus 416 ~~~~~~~~~~~i~l~~~l~~~----~~~g~~G~~~a~~~~~~~~~~~~~~~~~~~~ 467 (512)
+.++++ .++++++.+++.+. +++|+.|+++++.+++.+..++..++.+|++
T Consensus 165 ~~~~i~-~ivni~l~~~li~~~~~~~~~Gv~Gaa~at~is~~~~~~~~~~~~~~~~ 219 (456)
T PRK01766 165 VIGFLG-LLINIPLNYIFIYGKFGFPELGGVGCGVATAIVYWVMFLAMLIYIKRAR 219 (456)
T ss_pred HHHHHH-HHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHHHHHHHHHHhCh
Confidence 999998 58899999888642 4679999999999999999998877766543
No 22
>TIGR01695 mviN integral membrane protein MviN. This model represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII.
Probab=99.82 E-value=2.2e-17 Score=170.21 Aligned_cols=229 Identities=18% Similarity=0.149 Sum_probs=196.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccch
Q 010345 36 IEEVKRQLWLSGPLISVSLLQFCLQMISVMFVGHLGELPLSGASMATSFATVTGFSFLVGLSSALETLCGQSYGAKQYHM 115 (512)
Q Consensus 36 ~~~~~~i~~~~~p~~~~~~~~~~~~~i~~~~i~~lg~~~~~~~~~~~~i~~~~~~~~~~gl~~~~~~~is~~~~~~~~~~ 115 (512)
++..|++++.+.|..++++...+...+|+.+.+++|++++|+|+.+.++.+++...+..+++++..|.+++..+++|+++
T Consensus 219 ~~~~k~~l~~~~p~~~~~~~~~~~~~id~~~~~~~~~~~v~~~~~a~~l~~~~~~~~~~~i~~~~~P~~s~~~~~~~~~~ 298 (502)
T TIGR01695 219 DPGLKRFLKLFLPTTLGSSASQITLLINTALASFLEIGSVSALYYANRIYQLPLGIFGISLSTVLLPKLSRHASEGNWNE 298 (502)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH
Confidence 45789999999999999999999999999885559999999999999999887345678999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCC----CHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCchhh
Q 010345 116 LGIHMQRGMFVLLLISVPLALI-WANTESLLVAAHQ----DSEISKEAGLYARYMIPSIFAYAILQCLVRFLQTQNIVFP 190 (512)
Q Consensus 116 ~~~~~~~~~~~~~~~~i~~~~~-~~~~~~i~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 190 (512)
.++..+++..+...++++.+++ ..+++++..++.+ +++..+.+..++++.+++.++..+.....+.+++.||++.
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ii~l~~~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~a~g~~~~ 378 (502)
T TIGR01695 299 LRDLLNQGIRLSLLLTIPSSFGLLILSIPIVSLLFERGAFSEEDTVMTATILAAYGLGLIFYSLQKVLLRAFYARKDTRT 378 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhccCCcc
Confidence 9999999999999999998887 7799999988865 5677888999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHhCccccccccCccHHHHHHHHHHHHHHhhH
Q 010345 191 MVLSSGITALLHILVCWILVFKSGLGSRGAALANSISYWINVLLLAIYVKFSSSCAKTWTGFSKEALNNVFNFVRLAIPS 270 (512)
Q Consensus 191 ~~~~~~~~~~~~i~l~~~li~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 270 (512)
+++.++.+.++|++++++++ +.+|..|+++|+.+++.+..+...++.+|+.... + ..+..+++.+...+.
T Consensus 379 ~~~~~~~~~~i~i~l~~~l~--~~~G~~G~~~a~~i~~~~~~~~~~~~~~~~~~~~------~--~~~~~~~~~~~~~as 448 (502)
T TIGR01695 379 PFINSVISVVLNALLSLLLI--FPLGLVGIALATSAASMVSSVLLYLMLNRRLKGI------L--PFGVLKVLAKLVIAS 448 (502)
T ss_pred CHHHHHHHHHHHHHHHHHHH--HHHhhhHHHHHHHHHHHHHHHHHHHHHHHhcCcC------C--chHHHHHHHHHHHHH
Confidence 99999999999999999887 3689999999999999999988877776432110 0 124455556655554
Q ss_pred HHHH
Q 010345 271 AVMV 274 (512)
Q Consensus 271 ~~~~ 274 (512)
.+..
T Consensus 449 ~~m~ 452 (502)
T TIGR01695 449 AIIG 452 (502)
T ss_pred HHHH
Confidence 4443
No 23
>TIGR00797 matE putative efflux protein, MATE family. The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.
Probab=99.82 E-value=8.8e-18 Score=164.25 Aligned_cols=194 Identities=20% Similarity=0.167 Sum_probs=179.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHH
Q 010345 269 PSAVMVCLEMWSFEMMVLLSGLLPNPALETSVLSISLNTASTVWMIPFGLSGAASTRVSNELGAGHPEAARLAVCVVLVM 348 (512)
Q Consensus 269 p~~~~~~~~~~~~~~~~~~~~~l~~g~~~~a~~~~~~~i~~~~~~~~~~l~~a~~~~~~~~~g~~~~~~~~~~~~~~~~~ 348 (512)
|.++++....+...+|+.++++++ ++++++|+++.++..+...+..+++++..|.++++.|++|+|+.++..++...+
T Consensus 1 p~~~~~~~~~~~~~~~~~~~~~~g--~~~~~~~~~a~~i~~~~~~~~~~i~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~ 78 (342)
T TIGR00797 1 PAILANILQPLLGLVDTAFVGHLG--PVDLAAVSLGSSVFMFLFSILMGLGTATTALVAQAVGAGNYQRLGRQAQQSLLL 78 (342)
T ss_pred ChHHHHHHHHHHHHHHHHHHhccc--HHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHCCCChHHHHHHHHHHHHH
Confidence 778899999999999999999987 778999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhccCcHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccCcchhhHHHHHHHHHHhhHH
Q 010345 349 AVTEGILVGSVLILIRNVWGYAYSNEIEVVKYVASMLPILAASNFLDGLQCVLSGIARGCGWQMIGAFVNLGSYYLVGIP 428 (512)
Q Consensus 349 ~~~i~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~ 428 (512)
....+++.+++++++++++.++++.|++..+.+..+++++++..++.++.......+++.||.+.....++.+ .+++++
T Consensus 79 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~-~~~~i~ 157 (342)
T TIGR00797 79 ALLLGLPVLLVGYFFIDPLLSLMGADGEVAELAQDYLRILILGIPAYLLNFVLRGFLRGQGDTKTPMYITLIG-NVINII 157 (342)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHH-HHHHHH
Confidence 9999999999999999999999987788888999999999999999999999999999999999999999988 578888
Q ss_pred HHHHHHH-Hhc-CCchhHHHHHHHHHHHHHHHHHHHHHH
Q 010345 429 SAILLAF-LLH-FGGRGLWLGIICALIVQATSLGIITAR 465 (512)
Q Consensus 429 l~~~l~~-~~~-~g~~G~~~a~~~~~~~~~~~~~~~~~~ 465 (512)
+.+.+.+ ..+ +|..|+++++.+++.+..++..++.+|
T Consensus 158 ~~~~li~~~~g~~g~~g~~~~~~~~~~~~~~~~~~~~~~ 196 (342)
T TIGR00797 158 LNYILIFGKFGFLGIVGAALATVISYWLMFLLLLYYIKK 196 (342)
T ss_pred HhHHHHhcCccccccHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8888765 455 679999999999999988887766665
No 24
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide. The family includes RfbX part of the O antigen biosynthesis operon [], and SpoVB from Bacillus subtilis (Q00758 from SWISSPROT), which is involved in spore cortex biosynthesis [].; GO: 0000271 polysaccharide biosynthetic process, 0016020 membrane
Probab=99.79 E-value=5.1e-16 Score=146.57 Aligned_cols=270 Identities=19% Similarity=0.188 Sum_probs=208.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhc-cChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccchHHHHHH
Q 010345 43 LWLSGPLISVSLLQFCLQMISVMFVGH-LGELPLSGASMATSFATVTGFSFLVGLSSALETLCGQSYGAKQYHMLGIHMQ 121 (512)
Q Consensus 43 ~~~~~p~~~~~~~~~~~~~i~~~~i~~-lg~~~~~~~~~~~~i~~~~~~~~~~gl~~~~~~~is~~~~~~~~~~~~~~~~ 121 (512)
+|.+.....+++...+.+++...+++| +|++++|.++...++.++.......|++++..+.+++...+ +++.+....
T Consensus 2 ~k~~~~~~~~~~~~~~~~~~~~~il~r~l~~~~~G~~~~~~~~~~~~~~~~~~G~~~~~~r~~~~~~~~--~~~~~~~~~ 79 (273)
T PF01943_consen 2 LKNSLWLFLSNILSALIGFITIPILARYLGPEEYGIYSLALSIVSLLSILADLGLSQAIVRFIAEYKDK--KELRSAYFS 79 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh--HHHHHHHHH
Confidence 577888999999999999999999999 99999999999999999885666899999999998887432 344555555
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHcCCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCchhhHHHHHHHHHHH
Q 010345 122 RGMFVLLLISVPLALIWANTESLLVAAHQDSEISKEAGLYARYMIPSIFAYAILQCLVRFLQTQNIVFPMVLSSGITALL 201 (512)
Q Consensus 122 ~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 201 (512)
.........+++..+..... ..+..++ ... .+........+...........+++.++.+.....++...+.
T Consensus 80 ~~~~~~~~~~~i~~~~~~~~----~~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (273)
T PF01943_consen 80 SVLFLLLIFSLIFLLILLIA----SFFGNPS-LSL---ILIILALLILILSSLSSVFSGLLQGLQRFKYIAISNIISSLL 151 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHcCCch-HHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55544444443333332221 2333332 211 122222222257788888999999999999999999999988
Q ss_pred HHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHhCccccccccCccHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 010345 202 HILVCWILVFKSGLGSRGAALANSISYWINVLLLAIYVKFSSSCAKTWTGFSKEALNNVFNFVRLAIPSAVMVCLEMWSF 281 (512)
Q Consensus 202 ~i~l~~~li~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 281 (512)
..++...++. .+.+..+..++..++..+..+....+.+|+.+ .+ ....+++..|++++++.|..+++....+..
T Consensus 152 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (273)
T PF01943_consen 152 SLLLILLLLF-LGSSLWGFLLGLVISSLVSLIISLFYLRRKLR--PR---FSFFSKKFFKEILRFGLPLFLSSLLSWLYS 225 (273)
T ss_pred HHHHHHHHHH-HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHc--cc---ccccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8877766665 34458889999999999888888877765432 11 122236889999999999999999999999
Q ss_pred HHHHHHHhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010345 282 EMMVLLSGLLPNPALETSVLSISLNTASTVWMIPFGLSGAASTRVSNE 329 (512)
Q Consensus 282 ~~~~~~~~~l~~g~~~~a~~~~~~~i~~~~~~~~~~l~~a~~~~~~~~ 329 (512)
..|..+++++.+ ++++|.|+++.++......+..++.++..|.+++.
T Consensus 226 ~~d~~ii~~~~g-~~~vg~Y~~a~~l~~~~~~~~~~~~~~~~P~~s~l 272 (273)
T PF01943_consen 226 QIDRLIIGYFLG-PEAVGIYSVAYRLASAISFLLSSISTVLFPRLSRL 272 (273)
T ss_pred HhHHHHHHHhCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999884 89999999999999999999999999999999875
No 25
>TIGR02900 spore_V_B stage V sporulation protein B. SpoVB is the stage V sporulation protein B of the bacterial endopore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with rather high sequence similarity to SpoVB exist, including YkvU in B. subtilis and a number of proteins in the genus Clostridium. Member sequences for the seed alignment were chosen to select those proteins, no more than one to a genome, closest to B. subtilis SpoVB in a neighbor joining tree.
Probab=99.76 E-value=2.3e-16 Score=161.99 Aligned_cols=204 Identities=18% Similarity=0.147 Sum_probs=176.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cChh---------hHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Q 010345 34 KIIEEVKRQLWLSGPLISVSLLQFCLQMISVMFVGH-LGEL---------PLSGA-SMATSFATVTGFSFLVGLSSALET 102 (512)
Q Consensus 34 ~~~~~~~~i~~~~~p~~~~~~~~~~~~~i~~~~i~~-lg~~---------~~~~~-~~~~~i~~~~~~~~~~gl~~~~~~ 102 (512)
..++..|++++++.|..++++...+...+|+.++++ +++. .+|.+ +.+.++..++ ..+..+++++..|
T Consensus 219 ~~~~~~k~l~~~~~p~~l~~~~~~~~~~~d~~ii~~~l~~~g~~~~~a~~~~g~~~~~a~~i~~~~-~~~~~~l~~~~~p 297 (488)
T TIGR02900 219 EGKALLFDLFSVSLPLTLSRFIGSLLYFLETLLVPQRLVIAGVTYREATSLYGKLSGMAMPLLTFP-AVITSSLSTALVP 297 (488)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHChHHHHHHhH-HHHHHHHHHHHHH
Confidence 345688999999999999999999999999999988 5322 22333 3555677776 6778899999999
Q ss_pred HHHHHhCCCccchHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 010345 103 LCGQSYGAKQYHMLGIHMQRGMFVLLLISVPLALI-WANTESLLVAAHQDSEISKEAGLYARYMIPSIFAYAILQCLVRF 181 (512)
Q Consensus 103 ~is~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 181 (512)
.+++..+++|+|+.++..++...+....+++.+++ ..+++++...+.+++ .+.+++++.++..++........+.
T Consensus 298 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~----~~~~~l~i~~~~~~~~~~~~~~~~~ 373 (488)
T TIGR02900 298 DISEAMAKKNYSSIEKRINQAIKISLLLGLITTVILLVIPDELGALFYGRP----DAGNFIRVLAPSFPFLYFSAPLQSI 373 (488)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC----chHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998877 678899998887543 3567899999999999999999999
Q ss_pred HHhcCchhhHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHhC
Q 010345 182 LQTQNIVFPMVLSSGITALLHILVCWILVFKSGLGSRGAALANSISYWINVLLLAIYVKFS 242 (512)
Q Consensus 182 l~~~~~~~~~~~~~~~~~~~~i~l~~~li~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~ 242 (512)
+++.||++.+++.++...++|++++++++..+++|+.|+++++.+++.+..+...+..+|.
T Consensus 374 l~~~g~~~~~~~~~~~~~i~~i~l~~~l~~~~~~G~~Gaaia~~i~~~~~~~~~~~~~~~~ 434 (488)
T TIGR02900 374 LQGLGKQKVALRNSLIGAIVKIILLFVLTSIPSINIYGYAITFIITSVLVTILNLAEIKKN 434 (488)
T ss_pred HHhcCcchHHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999888755689999999999999999998888877643
No 26
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII []. Disruption of the MviN open reading frame results in flagellar structures that contain only the basal body and hook complex that lack the flagellum; suggesting that MviN might be involved in flagellin export or assembly []. Genome comparison studies led to MviN being predicted to be a peptidoglycan lipid II flippase though currently there is no direct evidence to support this annotation [].
Probab=99.75 E-value=2.4e-15 Score=151.17 Aligned_cols=205 Identities=22% Similarity=0.217 Sum_probs=191.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccchH
Q 010345 37 EEVKRQLWLSGPLISVSLLQFCLQMISVMFVGHLGELPLSGASMATSFATVTGFSFLVGLSSALETLCGQSYGAKQYHML 116 (512)
Q Consensus 37 ~~~~~i~~~~~p~~~~~~~~~~~~~i~~~~i~~lg~~~~~~~~~~~~i~~~~~~~~~~gl~~~~~~~is~~~~~~~~~~~ 116 (512)
+..|++++...|..++.....+...+|+.+.+++++.++++++.+.++.+++...+..++++...|..++...++|.++.
T Consensus 195 ~~~~~~~~~~~p~~l~~~~~qi~~lv~~~laS~l~~G~vs~l~YA~~l~~lp~~i~~~~i~tv~~P~ls~~~~~~d~~~~ 274 (451)
T PF03023_consen 195 PNLKRFLKLAIPLLLSSSISQINILVDRALASFLGEGSVSALNYAQRLYQLPLGIFAVSISTVVFPKLSRLAAEGDWEEF 274 (451)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHH
Confidence 45799999999999999999999999999999999999999999999999986788889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcC----CCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCchhhH
Q 010345 117 GIHMQRGMFVLLLISVPLALI-WANTESLLVAAH----QDSEISKEAGLYARYMIPSIFAYAILQCLVRFLQTQNIVFPM 191 (512)
Q Consensus 117 ~~~~~~~~~~~~~~~i~~~~~-~~~~~~i~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 191 (512)
++..++.+.....+.+|.++. ..+++|+++++. .+++..+.+...+++.+++.|+..+..++...+.+.||+|.+
T Consensus 275 ~~~~~~~l~~~~~i~iP~~~~~~~~a~~iV~llf~rG~F~~~~~~~ta~~l~~y~~~l~~~~l~~ll~r~fya~~~~~~~ 354 (451)
T PF03023_consen 275 RKTLRKALRLILLILIPASIGLIVLAEPIVRLLFERGAFTAEDTQLTASALRIYALGLPFYALNDLLSRVFYALGDTKTP 354 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHccCcHhH
Confidence 999999999999999999987 779999998774 366778889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHhCc
Q 010345 192 VLSSGITALLHILVCWILVFKSGLGSRGAALANSISYWINVLLLAIYVKFSS 243 (512)
Q Consensus 192 ~~~~~~~~~~~i~l~~~li~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~~ 243 (512)
++.++.+.++|++++.++. ..+|..|.++|+.++..+..+.....++|+.
T Consensus 355 ~~~~~~~~~lni~l~~~l~--~~~g~~Glala~sl~~~i~~~~l~~~l~r~~ 404 (451)
T PF03023_consen 355 VRISVISVVLNIILSILLV--PFFGVAGLALATSLSAIISALLLYILLRRRL 404 (451)
T ss_pred HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 9999999999999998887 5899999999999999999999988887554
No 27
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters. These proteins mediate resistance to a wide range of cationic dyes, fluroquinolones, aminoglycosides and other structurally diverse antibodies and drugs. MATE proteins are found in bacteria, archaea and eukaryotes. These proteins are predicted to have 12 alpha-helical transmembrane regions, some of the animal proteins may have an additional C-terminal helix. ; GO: 0015238 drug transmembrane transporter activity, 0015297 antiporter activity, 0006855 drug transmembrane transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3MKU_B 3MKT_B.
Probab=99.73 E-value=8.2e-18 Score=145.51 Aligned_cols=162 Identities=28% Similarity=0.424 Sum_probs=157.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHH
Q 010345 269 PSAVMVCLEMWSFEMMVLLSGLLPNPALETSVLSISLNTASTVWMIPFGLSGAASTRVSNELGAGHPEAARLAVCVVLVM 348 (512)
Q Consensus 269 p~~~~~~~~~~~~~~~~~~~~~l~~g~~~~a~~~~~~~i~~~~~~~~~~l~~a~~~~~~~~~g~~~~~~~~~~~~~~~~~ 348 (512)
|.+++++...+.+.+++.++++++ ++++++++++.++.++...+..+++++..+.+++++|++|+|+.++..+++..+
T Consensus 1 P~~~~~~~~~~~~~~~~~~~~~~g--~~~~a~~~i~~~~~~~~~~~~~g~~~a~~~~~s~~~G~~~~~~~~~~~~~~~~~ 78 (162)
T PF01554_consen 1 PIALMQLLQVLGFIIDTIFVGRLG--PEALAAYGIASSIFSILFMLIFGLATALQILISQNIGAGDYKRAKKVVRQGLLL 78 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHCCHCCT--TCCCCHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCSSSTTTCCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhC--HHHHHHHHHHHHHHHHHhhhcccccccccceeeccccccccccccccccccccc
Confidence 888999999999999999999996 889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhccCcHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccCcchhhHHHHHHHHHHhhHH
Q 010345 349 AVTEGILVGSVLILIRNVWGYAYSNEIEVVKYVASMLPILAASNFLDGLQCVLSGIARGCGWQMIGAFVNLGSYYLVGIP 428 (512)
Q Consensus 349 ~~~i~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~ 428 (512)
+..++++.++++..+++++..+|++|+|+.+.+.+++++..+..++..+.....+++++.||++.+++.++.+.|++++|
T Consensus 79 ~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~ 158 (162)
T PF01554_consen 79 SLIIGLLLSLVLLLFSEFILSLFGNDPEVIEIARQYLRIMAFSIPFFALFFVFSGILQGIGRTKIAMYISIISFWIINIP 158 (162)
T ss_dssp HHHHHHHHHHHHHHHHHCCHCTSSSTTCCHHHHHHHHCCHHHHHHHHHHHHHHCCCCGCCSTHCCCHHHHHHHHHHHHHH
T ss_pred chhcccchhhhhhhHHHHHHHHhhhhHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999997799999
Q ss_pred HHHH
Q 010345 429 SAIL 432 (512)
Q Consensus 429 l~~~ 432 (512)
++|+
T Consensus 159 l~yl 162 (162)
T PF01554_consen 159 LAYL 162 (162)
T ss_dssp HHHH
T ss_pred HHhC
Confidence 8874
No 28
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only]
Probab=99.72 E-value=5.1e-14 Score=139.29 Aligned_cols=232 Identities=19% Similarity=0.181 Sum_probs=200.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccchH
Q 010345 37 EEVKRQLWLSGPLISVSLLQFCLQMISVMFVGHLGELPLSGASMATSFATVTGFSFLVGLSSALETLCGQSYGAKQYHML 116 (512)
Q Consensus 37 ~~~~~i~~~~~p~~~~~~~~~~~~~i~~~~i~~lg~~~~~~~~~~~~i~~~~~~~~~~gl~~~~~~~is~~~~~~~~~~~ 116 (512)
+..|++.+...|..++..+.++...+|+.+-+.+.+.+.+.+..+..+.+++...+..++++...|..|+...++|.++.
T Consensus 229 ~~lk~~~~~~~p~~l~~sisQi~lli~~~iAS~l~~Gsis~l~YA~rl~qlPlGifgvai~tvllP~lSr~~~~~~~~~~ 308 (518)
T COG0728 229 PGLKRFLKLMLPALLGVSISQINLLIDTAIASFLAEGSVSWLYYADRLYQLPLGIFGVALSTVLLPSLSRHAANGDWPEF 308 (518)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhcCChHHH
Confidence 67899999999999999999999999999999999999999999999999997799999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcC----CCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCchhhH
Q 010345 117 GIHMQRGMFVLLLISVPLALI-WANTESLLVAAH----QDSEISKEAGLYARYMIPSIFAYAILQCLVRFLQTQNIVFPM 191 (512)
Q Consensus 117 ~~~~~~~~~~~~~~~i~~~~~-~~~~~~i~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 191 (512)
++..+.++..+....+|.++. ..+++|+.+.+. .+++....+...+....++.+++.+..++...+.+.+|+|.|
T Consensus 309 ~~~l~~~i~l~lll~lP~~~~l~~la~piv~~Lf~rG~F~~~d~~~ta~~L~~y~~gL~~~~L~~ll~~~FYAr~d~ktP 388 (518)
T COG0728 309 LKLLDWGLRLTLLLTLPASAGLLVLAEPIVSLLFERGAFTAEDVLMTAEALAAYSLGLIPFALVKLLSRVFYAREDTKTP 388 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHccCCCcC
Confidence 999999999999999999987 779999998773 255567778889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHhCccccccccCccHHHHHHHHHHHHHHhhHH
Q 010345 192 VLSSGITALLHILVCWILVFKSGLGSRGAALANSISYWINVLLLAIYVKFSSSCAKTWTGFSKEALNNVFNFVRLAIPSA 271 (512)
Q Consensus 192 ~~~~~~~~~~~i~l~~~li~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 271 (512)
+++.+++.++|+.+++.+. +.+|..|.++++.++.++.....++..+|+..... ...|+... ..|..+-..
T Consensus 389 ~~i~ii~~~~n~~l~~~l~--~~~~~~giala~s~a~~~~~~ll~~~l~k~~~~~~------~~~~~~~~-~~k~~l~~~ 459 (518)
T COG0728 389 MKIAIISLVVNILLNLLLI--PPLGHVGLALATSLAAWVNALLLYYLLRKRLVYLP------GRGWGLFL-ILKLLLASA 459 (518)
T ss_pred hHHHHHHHHHHHHHHHHHH--hhccchHHHHHHHHHHHHHHHHHHHHHHHhcCCCc------cchhhHHH-HHHHHHHHH
Confidence 9999999999999996666 57888999999999999999888888876543322 11334344 455555544
Q ss_pred HHHHHH
Q 010345 272 VMVCLE 277 (512)
Q Consensus 272 ~~~~~~ 277 (512)
+.....
T Consensus 460 i~~~~~ 465 (518)
T COG0728 460 IMAAAL 465 (518)
T ss_pred HHHHHH
Confidence 444443
No 29
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters. These proteins mediate resistance to a wide range of cationic dyes, fluroquinolones, aminoglycosides and other structurally diverse antibodies and drugs. MATE proteins are found in bacteria, archaea and eukaryotes. These proteins are predicted to have 12 alpha-helical transmembrane regions, some of the animal proteins may have an additional C-terminal helix. ; GO: 0015238 drug transmembrane transporter activity, 0015297 antiporter activity, 0006855 drug transmembrane transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3MKU_B 3MKT_B.
Probab=99.71 E-value=7.8e-18 Score=145.67 Aligned_cols=160 Identities=28% Similarity=0.392 Sum_probs=154.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHH
Q 010345 48 PLISVSLLQFCLQMISVMFVGHLGELPLSGASMATSFATVTGFSFLVGLSSALETLCGQSYGAKQYHMLGIHMQRGMFVL 127 (512)
Q Consensus 48 p~~~~~~~~~~~~~i~~~~i~~lg~~~~~~~~~~~~i~~~~~~~~~~gl~~~~~~~is~~~~~~~~~~~~~~~~~~~~~~ 127 (512)
|..+++++..+...+|+.+++++|++++++++++.++.++. ..+..|+++|..+.++|+.|++|+|+.++..+.++.+.
T Consensus 1 P~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~i~~~~~~~~-~~~~~g~~~a~~~~~s~~~G~~~~~~~~~~~~~~~~~~ 79 (162)
T PF01554_consen 1 PIALMQLLQVLGFIIDTIFVGRLGPEALAAYGIASSIFSIL-FMLIFGLATALQILISQNIGAGDYKRAKKVVRQGLLLS 79 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHCCHCCTTCCCCHCCHHHHHHHHH-HHHHHHHHHHHHHHHCCCCCSSSTTTCCCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH-hhhcccccccccceeecccccccccccccccccccccc
Confidence 88999999999999999999999999999999999999998 88999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH-HHhhHHHHHHcCCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCchhhHHHHHHHHH-HHHHHH
Q 010345 128 LLISVPLALI-WANTESLLVAAHQDSEISKEAGLYARYMIPSIFAYAILQCLVRFLQTQNIVFPMVLSSGITA-LLHILV 205 (512)
Q Consensus 128 ~~~~i~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~i~l 205 (512)
..++++..++ ..+.+++..+++.|++..+.+.+|+++..++.++........+++++.||++.++..++.+. ++++++
T Consensus 80 ~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l 159 (162)
T PF01554_consen 80 LIIGLLLSLVLLLFSEFILSLFGNDPEVIEIARQYLRIMAFSIPFFALFFVFSGILQGIGRTKIAMYISIISFWIINIPL 159 (162)
T ss_dssp HHHHHHHHHHHHHHHHCCHCTSSSTTCCHHHHHHHHCCHHHHHHHHHHHHHHCCCCGCCSTHCCCHHHHHHHHHHHHHHH
T ss_pred hhcccchhhhhhhHHHHHHHHhhhhHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHhH
Confidence 9999999988 77999999999999999999999999999999999999999999999999999999999999 899998
Q ss_pred HHH
Q 010345 206 CWI 208 (512)
Q Consensus 206 ~~~ 208 (512)
+++
T Consensus 160 ~yl 162 (162)
T PF01554_consen 160 AYL 162 (162)
T ss_dssp HHH
T ss_pred HhC
Confidence 874
No 30
>PRK10459 colanic acid exporter; Provisional
Probab=99.69 E-value=1.4e-13 Score=141.33 Aligned_cols=200 Identities=16% Similarity=0.099 Sum_probs=174.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccc
Q 010345 36 IEEVKRQLWLSGPLISVSLLQFCLQMISVMFVGH-LGELPLSGASMATSFATVTGFSFLVGLSSALETLCGQSYGAKQYH 114 (512)
Q Consensus 36 ~~~~~~i~~~~~p~~~~~~~~~~~~~i~~~~i~~-lg~~~~~~~~~~~~i~~~~~~~~~~gl~~~~~~~is~~~~~~~~~ 114 (512)
++..|++++++.|...+++...+...+|+.++++ +|++++|.|+.++++.+.+...+...+++...|..++. ++|++
T Consensus 203 ~~~~k~ll~~~~~~~~~~~~~~~~~~~d~~~lg~~lg~~~vG~Y~~A~~l~~~~~~~i~~~i~~v~~P~~s~~--~~~~~ 280 (492)
T PRK10459 203 LASVKPNLSFGAWQTAERIINYLNTNIDTILIGRILGAEVLGGYNLAYNVATVPPMKINPIITRVAFPVFAKI--QDDTE 280 (492)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhcCchhhhhHhhchHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHh--cCCHH
Confidence 4568999999999999999999999999999999 99999999999999998864555556778888988885 67888
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCchhhHHH
Q 010345 115 MLGIHMQRGMFVLLLISVPLALI-WANTESLLVAAHQDSEISKEAGLYARYMIPSIFAYAILQCLVRFLQTQNIVFPMVL 193 (512)
Q Consensus 115 ~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 193 (512)
+.++.+++.......+++|+.++ .+++++++..+.+++ +..+...++++++...+..........+++.||+|....
T Consensus 281 ~~~~~~~~~~~~~~~~~~p~~~~l~~~a~~ii~ll~g~~--~~~a~~~l~il~~~~~~~~~~~~~~~~l~a~g~~~~~~~ 358 (492)
T PRK10459 281 KLRVGFLKLLSVLGIINFPLLLGLMVVSNNFVPLVFGEK--WNSAIPILQLLCIVGLLRSVGNPIGSLLLAKGRADLSFK 358 (492)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcChh--HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhHH
Confidence 99999999999999999998877 678899998887654 567889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHh
Q 010345 194 SSGITALLHILVCWILVFKSGLGSRGAALANSISYWINVLLLAIYVKF 241 (512)
Q Consensus 194 ~~~~~~~~~i~l~~~li~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~ 241 (512)
.++...+++++..+.+. ..+|+.|+++++.+++.+......++..|
T Consensus 359 ~~~~~~~~~i~~~~~~~--~~~G~~g~a~a~~i~~~~~~~~~~~~~~~ 404 (492)
T PRK10459 359 WNVFKTFLFIPAIVIGG--QLAGLIGVALGFLLVQIINTILSYFLMIK 404 (492)
T ss_pred HHHHHHHHHHHHHHHHH--hhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99888888887766665 47899999999999999988887777743
No 31
>PRK15099 O-antigen translocase; Provisional
Probab=99.66 E-value=3.4e-14 Score=142.52 Aligned_cols=199 Identities=8% Similarity=-0.085 Sum_probs=172.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc
Q 010345 35 IIEEVKRQLWLSGPLISVSLLQFCLQMISVMFVGH-LGELPLSGASMATSFATVTGFSFLVGLSSALETLCGQSYGAKQY 113 (512)
Q Consensus 35 ~~~~~~~i~~~~~p~~~~~~~~~~~~~i~~~~i~~-lg~~~~~~~~~~~~i~~~~~~~~~~gl~~~~~~~is~~~~~~~~ 113 (512)
+++..|++++++.|..++++...+....|+.++++ +|++++|.|+.+.++.......+..+++++..|.+++. +|+
T Consensus 210 ~~~~~k~ll~~g~p~~~~~~~~~i~~~~~~~~l~~~~g~~~vg~y~~a~~i~~~~~~~~~~~~~~a~~P~~s~~---~~~ 286 (416)
T PRK15099 210 DNGLAGQLGKFTLMALITSVTLPVAYVMMRNLLAAHYSWDEVGIWQGVSSISDAYLQFITASFSVYLLPTLSRL---TEK 286 (416)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CCh
Confidence 35678999999999999999999999999999986 99999999999999988543788899999999999995 567
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCchhhHH
Q 010345 114 HMLGIHMQRGMFVLLLISVPLALI-WANTESLLVAAHQDSEISKEAGLYARYMIPSIFAYAILQCLVRFLQTQNIVFPMV 192 (512)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 192 (512)
|+.++..++........+++..++ .+++++++.++.+++ ++.+.++.+++.++..+..........+.+.++++...
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~ii~l~~g~~--~~~~~~~~~~l~~~~~l~~~~~~~g~~~~~~~~~~~~~ 364 (416)
T PRK15099 287 RDITREIVKALKFVLPAVAAASFTVWLLRDFAIWLLFSNK--FTAMRDLFAWQLVGDVLKVGAYVFGYLVIAKASLRFYI 364 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888999998888888887776 689999999998765 44567788898888888877777777777888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHH
Q 010345 193 LSSGITALLHILVCWILVFKSGLGSRGAALANSISYWINVLLLAIYVK 240 (512)
Q Consensus 193 ~~~~~~~~~~i~l~~~li~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~ 240 (512)
...+....++++++++++ +.+|..|+++++.+++.+......+...
T Consensus 365 ~~~~~~~~l~i~l~~~li--~~~G~~G~a~a~~is~~~~~~~~~~~~~ 410 (416)
T PRK15099 365 LAEVSQFTLLTGFAHWLI--PLHGALGAAQAYMATYIVYFSLCCGVFL 410 (416)
T ss_pred HHHHHHHHHHHHHHHHHH--HHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888889999999988 4799999999999999999987766554
No 32
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein
Probab=99.64 E-value=8e-13 Score=123.11 Aligned_cols=247 Identities=17% Similarity=0.189 Sum_probs=180.5
Q ss_pred HHHHHHHHHhhc-cChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHHHHHHHH
Q 010345 58 CLQMISVMFVGH-LGELPLSGASMATSFATVTGFSFLVGLSSALETLCGQSYGAKQYHMLGIHMQRGMFVLLLISVPLAL 136 (512)
Q Consensus 58 ~~~~i~~~~i~~-lg~~~~~~~~~~~~i~~~~~~~~~~gl~~~~~~~is~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 136 (512)
..+++-..+++| +|++++|.|+....+..+.......|+++.... ..++|+++.++..+.........+++..+
T Consensus 2 ~~~f~~~~~lar~l~~~~~G~~~~~~s~~~~~~~~~~~g~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (251)
T PF13440_consen 2 GINFLFLILLARYLGPEDFGIYALIFSIVSILSIVASLGLRQSLVR-----SAARDKQDIRSLLRFSLLVSLLLAVILAI 76 (251)
T ss_pred hHHHHHHHHHHHHCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hhccCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346777889999 999999999999999998855557778777544 23455666666666665554444444333
Q ss_pred HHHhhHHHHHHcCCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 010345 137 IWANTESLLVAAHQDSEISKEAGLYARYMIPSIFAYAILQCLVRFLQTQNIVFPMVLSSGITALLHILVCWILVFKSGLG 216 (512)
Q Consensus 137 ~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~l~~~li~~~~~g 216 (512)
+ ...+...+ ++++. ..++....+..+.........+.+++.+|.+......+........+...+.. .+.+
T Consensus 77 ~---~~~~~~~~-~~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 147 (251)
T PF13440_consen 77 L---AILIAYFF-GDPEL----FWLLLLLALAIFFSALSQLFRSILRARGRFRAYALIDIVRSLLRLLLLVLLLY-LGLN 147 (251)
T ss_pred H---HHHHHHHh-CChhH----HHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHH-HHhh
Confidence 2 11121223 33322 23455667778888999999999999999999999999999887555544444 3448
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHhCccccccccCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCChhh
Q 010345 217 SRGAALANSISYWINVLLLAIYVKFSSSCAKTWTGFSKEALNNVFNFVRLAIPSAVMVCLEMWSFEMMVLLSGLLPNPAL 296 (512)
Q Consensus 217 ~~g~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~g~~ 296 (512)
..+..++..++..+..+......+++.+ .++ +.+..| .++.+.|..+++.........|..+++.+. |++
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~----~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~li~~~l-~~~ 217 (251)
T PF13440_consen 148 LWSILLAFIISALLALLISFYLLRRKLR----LSF----KFSWRR-LLKYGLPFSLSSLLSWLLSQIDRLLIGYFL-GPE 217 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccC----CCc----hhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CHH
Confidence 8888888888888777666554332111 111 122234 789999999999999999999999999944 389
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Q 010345 297 ETSVLSISLNTASTVW-MIPFGLSGAASTRVSN 328 (512)
Q Consensus 297 ~~a~~~~~~~i~~~~~-~~~~~l~~a~~~~~~~ 328 (512)
++|.|+++.++...+. .+..++++...|.++|
T Consensus 218 ~~g~y~~a~~l~~~~~~~~~~~i~~~~~p~lar 250 (251)
T PF13440_consen 218 AVGIYSVAQRLASLPASLLSSAISSVFFPKLAR 250 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999888 9999999999999886
No 33
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]
Probab=99.61 E-value=2.8e-13 Score=138.84 Aligned_cols=187 Identities=22% Similarity=0.275 Sum_probs=172.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc
Q 010345 35 IIEEVKRQLWLSGPLISVSLLQFCLQMISVMFVGH-LGELPLSGASMATSFATVTGFSFLVGLSSALETLCGQSYGAKQY 113 (512)
Q Consensus 35 ~~~~~~~i~~~~~p~~~~~~~~~~~~~i~~~~i~~-lg~~~~~~~~~~~~i~~~~~~~~~~gl~~~~~~~is~~~~~~~~ 113 (512)
.++..|++++.+.|...+.+...+.+.+|+.++++ +|++++|.|+.+.++.... ..+...++....|..++...++|+
T Consensus 208 ~~~~~~~~l~~~~p~~~~~~~~~l~~~~D~~~i~~~l~~~~vG~Y~~a~~i~~~~-~~~~~~l~~~l~P~~s~~~~~~~~ 286 (480)
T COG2244 208 SLALLKELLRFGLPLLLSSLLNFLFTNIDTLLLGLFLGPAQVGIYSAAQRLVSLL-LIVASALNRVLFPALSRAYAEGDR 286 (480)
T ss_pred hhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHheecccccHHHHHH-HHHHHHHHHHHHHHHHHHHHcCcH
Confidence 56889999999999999999999999999999999 9999999999888888887 888999999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCchhhHH
Q 010345 114 HMLGIHMQRGMFVLLLISVPLALI-WANTESLLVAAHQDSEISKEAGLYARYMIPSIFAYAILQCLVRFLQTQNIVFPMV 192 (512)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 192 (512)
++.++..++...+....+++..++ .++++|+...+.+++. ..+...+++.++..++..........+++.||++...
T Consensus 287 ~~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~i~~~fg~~~--~~~~~~l~il~~~~~~~~~~~~~~~~l~~~g~~~~~~ 364 (480)
T COG2244 287 KALKKLLRQSLKLLLLISIPALLGLLLLAPPIITLLFGEKY--ASAAPILQLLALAGLFLSLVSLTSSLLQALGKQRLLL 364 (480)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhheeecCCcc--cchhHHHHHHHHHHHHHHHHHHHHHHHHHcCcchhhH
Confidence 999999999999999999999887 7788899988776652 3377889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHH
Q 010345 193 LSSGITALLHILVCWILVFKSGLGSRGAALANSIS 227 (512)
Q Consensus 193 ~~~~~~~~~~i~l~~~li~~~~~g~~g~~~a~~i~ 227 (512)
..+.++.++|++++++++ +.+|..|++.++ .+
T Consensus 365 ~~~~~~~i~~~~l~~~li--~~~g~~g~~~a~-~~ 396 (480)
T COG2244 365 LISLISALLNLILNLLLI--PRFGLIGAAIAT-AS 396 (480)
T ss_pred HHHHHHHHHHHHHHhHHH--HhhhhhhHHHHH-HH
Confidence 999999999999999998 588999999999 44
No 34
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol []. RFT1 encodes an evolutionarily conserved protein required for this translocation.; GO: 0005319 lipid transporter activity, 0006869 lipid transport, 0016021 integral to membrane
Probab=99.42 E-value=8.7e-10 Score=111.77 Aligned_cols=420 Identities=12% Similarity=-0.026 Sum_probs=252.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc-cChhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhCCCccchHHHHHH
Q 010345 44 WLSGPLISVSLLQFCLQMISVMFVGH-LGELPLSGASMATSFAT-VTGFSFLVGLSSALETLCGQSYGAKQYHMLGIHMQ 121 (512)
Q Consensus 44 ~~~~p~~~~~~~~~~~~~i~~~~i~~-lg~~~~~~~~~~~~i~~-~~~~~~~~gl~~~~~~~is~~~~~~~~~~~~~~~~ 121 (512)
+-+.-.++.|++..+.+++-+.++-| ++|+.+|..++=..+.. .+...--.++..++++.-.+...++|.++..+..+
T Consensus 5 ~gas~li~lQl~sRllTFvlN~lllR~lsp~ilGi~nv~LeLl~sTILFlSRE~fR~A~lR~~~~~~~~~~~~~~~n~~w 84 (549)
T PF04506_consen 5 KGASFLILLQLLSRLLTFVLNQLLLRFLSPEILGIANVQLELLYSTILFLSREAFRRACLRQPSSSIDKSNWAQSINLLW 84 (549)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccCcccHHHhhhccc
Confidence 45566788888888888888877777 99999998855444432 22244556777776653333211222333333333
Q ss_pred HHHHHHHHHHHHHHHHHH--hhHHH----HHHcCCC-HH---HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcC----c
Q 010345 122 RGMFVLLLISVPLALIWA--NTESL----LVAAHQD-SE---ISKEAGLYARYMIPSIFAYAILQCLVRFLQTQN----I 187 (512)
Q Consensus 122 ~~~~~~~~~~i~~~~~~~--~~~~i----~~~~~~~-~~---~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~----~ 187 (512)
....+..+.+++++.+.+ ...|. ......+ ++ ..+.....+.+...+.....+...+-...|..- |
T Consensus 85 ls~~lq~vvn~~~~~I~l~~igi~~~~~~~~~~~~~~~~~~~~~p~~~~~v~l~~~s~~iELlsEP~~il~Q~~l~~~~R 164 (549)
T PF04506_consen 85 LSVPLQAVVNLICSYIWLAWIGIPLSILLSQYQYASISNAFVIEPYFEPSVFLYGLSAFIELLSEPLYILAQQMLFFKLR 164 (549)
T ss_pred ccCcchhheehhHHHHhHhhccccHHHHHHHHHhhcchhhHHhhhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhee
Confidence 333333333332222211 11111 0111111 11 122223333444555555555555544444444 4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhcCC--Cc------chhHHHHHHHHHHHHHHHHHHHHhCcc-c----cccccCccH
Q 010345 188 VFPMVLSSGITALLHILVCWILVFKSGL--GS------RGAALANSISYWINVLLLAIYVKFSSS-C----AKTWTGFSK 254 (512)
Q Consensus 188 ~~~~~~~~~~~~~~~i~l~~~li~~~~~--g~------~g~~~a~~i~~~~~~~~~~~~~~~~~~-~----~~~~~~~~~ 254 (512)
.+.-........+++......... .++ +. .-+.++..+++....+........... . .....+...
T Consensus 165 v~~E~~A~~~k~i~t~~~v~~~~~-~~~~~~~~~~~~~~~~~l~Falgq~~ys~~l~~~y~~~~~~~~~~~s~~lp~i~~ 243 (549)
T PF04506_consen 165 VKAESLAVFAKCIVTFALVVLAER-SGYGFFYFLSGQEGLAILAFALGQLAYSITLFFCYYWMYFFPFKSFSDLLPKISS 243 (549)
T ss_pred eEechHHHHHHHHHHHHHHHHHHh-cccceeeeeccchhHHHHHHHHHHHHHHHHHHhhHHhhccCcccchhhccccccc
Confidence 444444444444444333333221 111 11 123455556665555433322211111 1 111111111
Q ss_pred ---HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Q 010345 255 ---EALNNVFNFVRLAIPSAVMVCLEMWSFEMMVLLSGL--LPNPALETSVLSISLNTAST-VWMIPFGLSGAASTRVSN 328 (512)
Q Consensus 255 ---~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~--l~~g~~~~a~~~~~~~i~~~-~~~~~~~l~~a~~~~~~~ 328 (512)
.....-+++++........++.-.+...-|++++.. +.+ .++-|.|++++++.++ ...+...+-.......++
T Consensus 244 ~~~~~~~fd~~~l~l~~~~~~Qsi~K~lLTEGdk~vl~~~~~~t-~~~QGvY~lv~N~GSLvaR~lF~PiEEs~~~~Fsk 322 (549)
T PF04506_consen 244 GNPKSYYFDRDLLSLTWSFFFQSILKHLLTEGDKLVLSFFNLLT-FEDQGVYALVSNYGSLVARLLFQPIEESSRLYFSK 322 (549)
T ss_pred cccccccCCHHHHHHHHHHHHHHHHHHHHhhCCeEEEEeeccCC-HHHhhHHHHHhhHHHHHHHHHhCcHHHHHHHHHHH
Confidence 011134788888999999999999999999999988 664 8899999999999887 566777888888888888
Q ss_pred hhcCCCh---------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCcHhHHHHHHHHHHHHHHHHHHhhHHH
Q 010345 329 ELGAGHP---------EAARLAVCVVLVMAVTEGILVGSVLILIRNVWGYAYSNEIEVVKYVASMLPILAASNFLDGLQC 399 (512)
Q Consensus 329 ~~g~~~~---------~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~ 399 (512)
...+++. ++..+.....++....+++.+...-...++.+.+++.++.-....+...++.++...++.+++.
T Consensus 323 ~l~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~gl~~~~fG~~~s~~lL~~~~g~~w~~~~~~~~l~~yc~yi~~la~NG 402 (549)
T PF04506_consen 323 LLSRDNSKKKQPQESLKQAANVLSNLLKFYLYLGLVIVAFGPPYSPLLLRLLGGSRWSSTSAPSLLRAYCYYIPFLAING 402 (549)
T ss_pred HhcccCchhhccchhHHHHHHHHHHHHHHHHHHHHHHHHhChhhHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHcc
Confidence 8765543 3456667777777777777777666777777888876644333346889999999999999999
Q ss_pred HHHHHHhccCcchhhHHHHHHH--HHHhhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHc
Q 010345 400 VLSGIARGCGWQMIGAFVNLGS--YYLVGIPSAILLAFLLHFGGRGLWLGIICALIVQATSLGIITART 466 (512)
Q Consensus 400 ~~~~~l~~~g~~~~~~~~~~~~--~~~~~i~l~~~l~~~~~~g~~G~~~a~~~~~~~~~~~~~~~~~~~ 466 (512)
+...+.++....+.....+-.- ..++.+..++.+... ++|..|..+|.++.+.++-+.+..+.+|.
T Consensus 403 i~EaF~~s~a~~~~l~~~~~~m~~~S~~f~~~~~~l~~~-~~G~~GlI~AN~iNM~lRI~ys~~fI~~~ 470 (549)
T PF04506_consen 403 ITEAFVFSVASESQLDRYNYWMVVFSAIFLAASYLLTRW-GLGAVGLILANCINMSLRIIYSLRFIRRY 470 (549)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCCCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999998876655433221 124556677777665 78999999999999999999988777663
No 35
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only]
Probab=99.34 E-value=2.6e-10 Score=113.96 Aligned_cols=214 Identities=17% Similarity=0.166 Sum_probs=192.3
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhcCCCh
Q 010345 257 LNNVFNFVRLAIPSAVMVCLEMWSFEMMVLLSGLLPNPALETSVLSISLNTAST-VWMIPFGLSGAASTRVSNELGAGHP 335 (512)
Q Consensus 257 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~g~~~~a~~~~~~~i~~~-~~~~~~~l~~a~~~~~~~~~g~~~~ 335 (512)
+...|++.+++.|..+..........++..++++++ +.++++.+++++..+. -+.+..++..+..|..+|++|++++
T Consensus 24 ~~e~k~l~~ia~P~i~~~~~~~~~~~is~~f~GhlG--~leLaa~sla~s~~n~~~~s~~~gl~~aletlcgQa~ga~~~ 101 (473)
T KOG1347|consen 24 VTESKELARLALPAILTFLAQPLLSLVSTAFAGHLG--NLELASVSLANSFANITGVSILLGLQLALDTLCGQAFGAKKF 101 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhcccc--chHHHHHHHHHHhhcccchHHhhccchhhhcchHhhhccccc
Confidence 678899999999999999999999999999999999 5599999999998876 5667789999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCcHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccCcchhhH
Q 010345 336 EAARLAVCVVLVMAVTEGILVGSVLILIRNVWGYAYSNEIEVVKYVASMLPILAASNFLDGLQCVLSGIARGCGWQMIGA 415 (512)
Q Consensus 336 ~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 415 (512)
+.......++........+|.. .++.+.+++...+..|+++...+..+.++..+..+.+.........+++.++.....
T Consensus 102 ~~lg~~lqrs~~~l~~~~~~~~-~l~~~~~~il~~lgq~~~i~~~a~~y~~~~ip~~~a~~~~~~l~~~lq~Q~~~~~~~ 180 (473)
T KOG1347|consen 102 TALGVYLQRSGIVLLVQGLPIS-LLILNSEPILLLLGQDPDISRDAGSYAFMLIPGLFSYAVSFPLAKFLQAQSITLPLL 180 (473)
T ss_pred chhhHHHHHHHHHHHHHHHHHH-HHHHccHHHHHHhCCChhHHHHHhhhHhhhcchhhhhHHHHHHHHHHHhccCchHHH
Confidence 9999999999999998888886 455666999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHH----ccHHHHHHH
Q 010345 416 FVNLGSYYLVGIPSAILLAFLLHFGGRGLWLGIICALIVQATSLGIITAR----TNWEKEVSH 474 (512)
Q Consensus 416 ~~~~~~~~~~~i~l~~~l~~~~~~g~~G~~~a~~~~~~~~~~~~~~~~~~----~~~~~~~~~ 474 (512)
++.... .++++++++++.+.+++|..|+..+..++++........+... ..|.....+
T Consensus 181 ~~~~~~-~~lhi~~~~llv~~~~~g~~Gaala~~~s~w~~~~~l~~yi~~~~~~~~w~~~s~~ 242 (473)
T KOG1347|consen 181 VIGLVA-LVLHILLTWLLVSKLGLGIKGAALALVASYWLNVRILLLYAVLSGCLAAWSGFSGE 242 (473)
T ss_pred HHHHHH-HHHHHHHHHHhhhcccCCCccchHHHHHHHHHHHHHHHHHheecCchhhhhhhhHh
Confidence 999988 7999999999999999999999999999999988876655543 345555555
No 36
>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.25 E-value=6.1e-08 Score=91.90 Aligned_cols=419 Identities=13% Similarity=-0.019 Sum_probs=243.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cChhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhCCCccch
Q 010345 38 EVKRQLWLSGPLISVSLLQFCLQMISVMFVGH-LGELPLSGASMATSFATVT-GFSFLVGLSSALETLCGQSYGAKQYHM 115 (512)
Q Consensus 38 ~~~~i~~~~~p~~~~~~~~~~~~~i~~~~i~~-lg~~~~~~~~~~~~i~~~~-~~~~~~gl~~~~~~~is~~~~~~~~~~ 115 (512)
...+..+.+.-.+..|++..+.++.-+.++-| ++++.+|..++-..+.+-. ...--.++.-+..+.-++. +++.++
T Consensus 6 vL~ss~~ga~~~i~~Q~~~RiiTF~lN~~liR~~s~~v~gi~nvrl~lL~sTiLFlsREair~A~l~~gs~~--~d~~te 83 (530)
T KOG2864|consen 6 VLESSFSGAVFSIRGQLLARIITFALNALLIRFLSPEVLGIVNVRLELLQSTILFLSREAIRLAELRIGSEP--ADTWTE 83 (530)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHcChhheehhHHHHHHHHHHHHHhhHHHHHHHhccCCCCC--CccHHH
Confidence 34455566667777788887777776666666 9999999987765554421 1222334444433322211 122345
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-hhHHHHHHcCCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCchhhHHHH
Q 010345 116 LGIHMQRGMFVLLLISVPLALIWA-NTESLLVAAHQDSEISKEAGLYARYMIPSIFAYAILQCLVRFLQTQNIVFPMVLS 194 (512)
Q Consensus 116 ~~~~~~~~~~~~~~~~i~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 194 (512)
..+..+.+--+...+.+++.-+++ +....-.....+ .-..-+.+...+...-.+...+--..|..-+.+.-.+.
T Consensus 84 ~~n~~wlS~~L~~~i~~~~i~~wl~~~~s~d~i~~~p-----~y~~~I~~~~~S~vvELlsEp~~iv~Q~~~~~~~~~i~ 158 (530)
T KOG2864|consen 84 FINLLWLSVPLQTAINVACIYFWLGFLSSSDEISYSP-----LYAFAIFIIGLSIVVELLSEPLYIVSQCGLKVQLRAIA 158 (530)
T ss_pred HHHhhhhhhhHHHHHHHHHHHHHHHHhhccchhhcCc-----hHhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence 555555555555555555443322 111110000111 11112333444444455555555555666666666666
Q ss_pred HHHHHHHHHHHHHHHHH-hc-CCCcchhHHHHHHHHHHHHHHHHHHHHhCcc-ccc-----c----ccCcc-HH-HHHHH
Q 010345 195 SGITALLHILVCWILVF-KS-GLGSRGAALANSISYWINVLLLAIYVKFSSS-CAK-----T----WTGFS-KE-ALNNV 260 (512)
Q Consensus 195 ~~~~~~~~i~l~~~li~-~~-~~g~~g~~~a~~i~~~~~~~~~~~~~~~~~~-~~~-----~----~~~~~-~~-~~~~~ 260 (512)
.-+...+.-...+...+ +. +.++..-|+|.........+...+++.+.++ .+. + .++.. .+ ....-
T Consensus 159 e~l~~~v~~i~~fa~lv~~~~~~~l~~FAlaql~~~itl~l~y~~~Yf~~~~s~~~~~~~~r~Sdllpk~~~n~~~~ffd 238 (530)
T KOG2864|consen 159 EGLATIVKCIVLFAGLVMGPNMYALLAFALAQLAYAITLLLCYYWFYFYIRGSIPETEPFSRFSDLLPKVSENERGIFFD 238 (530)
T ss_pred hHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCcccccchhhhhhhccCCCCCCcccccc
Confidence 66666666333333332 22 2333444444444443333322222222222 100 0 00000 00 01123
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCC-hhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhcCCChHHH
Q 010345 261 FNFVRLAIPSAVMVCLEMWSFEMMVLLSGLLPN-PALETSVLSISLNTAST-VWMIPFGLSGAASTRVSNELGAGHPEAA 338 (512)
Q Consensus 261 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~-g~~~~a~~~~~~~i~~~-~~~~~~~l~~a~~~~~~~~~g~~~~~~~ 338 (512)
++..+.........+.-.+...-+.++++...- +-.+-|.|.++++.-++ ..++...+-.......++...+++.|+.
T Consensus 239 ~d~~~~~~s~~~Qs~lKqlLTeGdkyvmt~~~~ls~~~QgvYd~v~n~GSLlaR~iF~PIEEss~~~FA~~ls~~~qe~~ 318 (530)
T KOG2864|consen 239 NDLLKLTKSFTFQSFLKQLLTEGDKYVMTFTELLSFGDQGVYDLVSNYGSLLARLIFRPIEESSYIYFARLLSRDNQENV 318 (530)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcccceeEeeeccCCcchhhHHHHHHhhhhHHHHHHhChhHHHHHHHHHHHhhccchhhH
Confidence 455566666666777777777778887774421 14478899999999776 6677778888888888888888877777
Q ss_pred HHHHH---HHHHHHHHHHHHHHHHHHHhhhhhhhhccCcHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccCcchhhH
Q 010345 339 RLAVC---VVLVMAVTEGILVGSVLILIRNVWGYAYSNEIEVVKYVASMLPILAASNFLDGLQCVLSGIARGCGWQMIGA 415 (512)
Q Consensus 339 ~~~~~---~~~~~~~~i~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 415 (512)
|+... ..++....+++.....-.-.++++..++++..-.-..+...+++++...++.+++.+..++..+.+..+-.-
T Consensus 319 k~a~~vL~~lLklv~~igli~~~FG~~YS~~vL~lygG~kwss~~~~~lL~~YclYI~~lAiNGitEaF~~A~~t~~qi~ 398 (530)
T KOG2864|consen 319 KKAVDVLSNLLKLVIYIGLIFITFGPAYSYVVLLLYGGSKWSSGGGSLLLSWYCLYIPFLAINGITEAFAFAVATSRQID 398 (530)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCccccHHHHHHHcCccccCCCchHHHHHHHHHHHHHHhccHHHHHHHHhccHHHHH
Confidence 66544 444555555544444445556677777766432223356889999999999999999999999988766544
Q ss_pred HHH---HHHHHHhhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHc
Q 010345 416 FVN---LGSYYLVGIPSAILLAFLLHFGGRGLWLGIICALIVQATSLGIITART 466 (512)
Q Consensus 416 ~~~---~~~~~~~~i~l~~~l~~~~~~g~~G~~~a~~~~~~~~~~~~~~~~~~~ 466 (512)
..+ +.. .+..+.+++++.-. .|..|...|.++.+.++-+......++.
T Consensus 399 ~~n~~mlaf-SviflilsylL~~~--~~~~GlIlANiiNm~lRIlys~~fI~~~ 449 (530)
T KOG2864|consen 399 KHNKFMLAF-SVIFLILSYLLIRW--FGLVGLILANIINMSLRILYSLRFIRHY 449 (530)
T ss_pred hcccchhHH-HHHHHHHHHHHHHH--hchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 422 222 35566788888654 5889999999999999888876666653
No 37
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences. The ANK protein spans the outer cell membrane and shuttles inorganic pyrophosphate (PPi), a major inhibitor of physiologic and pathologic calcification, bone mineralisation and bone resorption []. Mutations in ANK are thought to give rise to Craniometaphyseal dysplasia (CMD) which is a rare skeletal disorder characterised by progressive thickening and increased mineral density of craniofacial bones and abnormally developed metaphyses in long bones [].; GO: 0015114 phosphate ion transmembrane transporter activity, 0035435 phosphate ion transmembrane transport, 0016021 integral to membrane
Probab=98.86 E-value=1.2e-05 Score=73.38 Aligned_cols=263 Identities=13% Similarity=0.031 Sum_probs=164.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cC-h-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc
Q 010345 37 EEVKRQLWLSGPLISVSLLQFCLQMISVMFVGH-LG-E-LPLSGASMATSFATVTGFSFLVGLSSALETLCGQSYGAKQY 113 (512)
Q Consensus 37 ~~~~~i~~~~~p~~~~~~~~~~~~~i~~~~i~~-lg-~-~~~~~~~~~~~i~~~~~~~~~~gl~~~~~~~is~~~~~~~~ 113 (512)
..++++.++-.|..++.++..+...+-+.-++| -. + +.+++|+++..+.-++ ..+...+.+....++ ++++
T Consensus 8 ~~y~~li~F~iPLa~ts~~~dl~~qiiNagLAr~~e~~vetLAsfglA~sL~lf~-~sp~~~~~~igl~~V-----~s~r 81 (345)
T PF07260_consen 8 TSYWPLIRFFIPLAITSLAMDLGEQIINAGLARVQEDPVETLASFGLAYSLMLFF-ASPLSMFHHIGLVFV-----NSKR 81 (345)
T ss_pred chHHHHHHHHHHHHHHHHHHhccHHHHHHHHhhccchHHHHHHHHHHHHHHHHHH-hChhhhhHHHHHHHh-----cchh
Confidence 467899999999999999999999999999987 33 3 4589999999998887 666666666544333 3332
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHH-HH-hhHHHH-HHcCCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCchhh
Q 010345 114 HMLGIHMQRGMFVLLLISVPLALI-WA-NTESLL-VAAHQDSEISKEAGLYARYMIPSIFAYAILQCLVRFLQTQNIVFP 190 (512)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~i~~~~~-~~-~~~~i~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 190 (512)
++ ++.................++ +- +...++ ..++.+|++.+.+...+.++.+.-++.++....++++.-.+++..
T Consensus 82 sr-r~~vl~~~vag~v~avi~~LIa~TpLG~~li~~lhgVs~~va~~tr~a~l~L~llPfl~alr~~~qGILik~r~s~i 160 (345)
T PF07260_consen 82 SR-RKAVLCMAVAGAVAAVIHLLIAWTPLGNYLINDLHGVSPSVAEKTRRAFLYLTLLPFLDALRWIHQGILIKHRHSWI 160 (345)
T ss_pred hh-HHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhccceeE
Confidence 22 223232222222222222222 21 333444 466889999999999999999999999999999999886677666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCc-chhHH---HHHHHHHHHH-HHHHHHHHhCccccccccCccHHHHHHHHHHHH
Q 010345 191 MVLSSGITALLHILVCWILVFKSGLGS-RGAAL---ANSISYWINV-LLLAIYVKFSSSCAKTWTGFSKEALNNVFNFVR 265 (512)
Q Consensus 191 ~~~~~~~~~~~~i~l~~~li~~~~~g~-~g~~~---a~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (512)
....++......++....++.. +... ..+.+ +...+..+-. ++++-|+.+-.............+...++++++
T Consensus 161 V~~aSI~~v~~qvV~v~~ll~~-~l~~~~pllipil~~y~g~~vr~t~v~LGy~~~i~~~~p~~~~~~~~~~~tl~~~l~ 239 (345)
T PF07260_consen 161 VGSASIADVIAQVVLVAILLSM-HLEPQDPLLIPILALYAGIAVRFTIVCLGYYQSIHDIIPQLSGLEKGDSATLQRMLK 239 (345)
T ss_pred eehHHHHHHHHHHHHHHHHHcc-ccCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCcccCCChhHHHHHH
Confidence 6666665555555544445532 2222 22222 2222222211 122222211111122222222224467899999
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHhc-CCCh---hhHHHHHHHHHHH
Q 010345 266 LAIPSAVMVCLEMWSFEMMVLLSGL-LPNP---ALETSVLSISLNT 307 (512)
Q Consensus 266 ~~~p~~~~~~~~~~~~~~~~~~~~~-l~~g---~~~~a~~~~~~~i 307 (512)
+.+|.+........+-.+.+.++++ ++++ ++++++..+.+..
T Consensus 240 F~~PL~~~~~tq~~SrplVnl~vsR~l~gs~a~~~avavl~~~ypv 285 (345)
T PF07260_consen 240 FWWPLALVLATQRISRPLVNLFVSRDLSGSQAATEAVAVLTATYPV 285 (345)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCCcccchhhhhhhccccCC
Confidence 9999999999999999999999999 4432 3566665544443
No 38
>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain
Probab=98.45 E-value=4.3e-06 Score=70.50 Aligned_cols=80 Identities=23% Similarity=0.160 Sum_probs=73.7
Q ss_pred HHHHHHHHHHhhHHHHHHHHHhccCcchhhHHHHHHHHHHhhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHH
Q 010345 385 LPILAASNFLDGLQCVLSGIARGCGWQMIGAFVNLGSYYLVGIPSAILLAFLLHFGGRGLWLGIICALIVQATSLGIITA 464 (512)
Q Consensus 385 l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l~~~l~~~~~~g~~G~~~a~~~~~~~~~~~~~~~~~ 464 (512)
+++++++.++.++....+..+++.||+|..++.+..+ .++++++++.+ .+++|..|+++++.+++.+...+..+..+
T Consensus 2 l~il~~~~~~~~l~~~~~~il~~~~k~~~~~~~~~~~-~~v~i~~~~~l--i~~~G~~Gaa~a~~i~~~~~~~~~~~~~~ 78 (146)
T PF14667_consen 2 LQILALAIIFMGLSQPLGSILQAMGKTKWPFIITLIG-AIVNIILNYIL--IPRFGIYGAAIATAISEIVSFILNLWYVR 78 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHH-HHHHHHHHHHH--HHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 6789999999999999999999999999999999999 79999999999 66789999999999999999998888888
Q ss_pred Hcc
Q 010345 465 RTN 467 (512)
Q Consensus 465 ~~~ 467 (512)
|..
T Consensus 79 k~~ 81 (146)
T PF14667_consen 79 KKI 81 (146)
T ss_pred HHh
Confidence 753
No 39
>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain
Probab=98.42 E-value=3.1e-05 Score=65.24 Aligned_cols=79 Identities=25% Similarity=0.298 Sum_probs=73.4
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHh
Q 010345 162 ARYMIPSIFAYAILQCLVRFLQTQNIVFPMVLSSGITALLHILVCWILVFKSGLGSRGAALANSISYWINVLLLAIYVKF 241 (512)
Q Consensus 162 l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~l~~~li~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~ 241 (512)
+++.+++.++..+....++.+++.||++.....++.+.++|++++++++ +++|..|+++|+.+++........++.+|
T Consensus 2 l~il~~~~~~~~l~~~~~~il~~~~k~~~~~~~~~~~~~v~i~~~~~li--~~~G~~Gaa~a~~i~~~~~~~~~~~~~~k 79 (146)
T PF14667_consen 2 LQILALAIIFMGLSQPLGSILQAMGKTKWPFIITLIGAIVNIILNYILI--PRFGIYGAAIATAISEIVSFILNLWYVRK 79 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHH--HHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678899999999999999999999999999999999999999999997 58999999999999999999888888865
Q ss_pred C
Q 010345 242 S 242 (512)
Q Consensus 242 ~ 242 (512)
+
T Consensus 80 ~ 80 (146)
T PF14667_consen 80 K 80 (146)
T ss_pred H
Confidence 4
No 40
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol []. RFT1 encodes an evolutionarily conserved protein required for this translocation.; GO: 0005319 lipid transporter activity, 0006869 lipid transport, 0016021 integral to membrane
Probab=98.27 E-value=0.00019 Score=73.30 Aligned_cols=203 Identities=12% Similarity=0.053 Sum_probs=159.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc---cChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc-
Q 010345 38 EVKRQLWLSGPLISVSLLQFCLQMISVMFVGH---LGELPLSGASMATSFATVTGFSFLVGLSSALETLCGQSYGAKQY- 113 (512)
Q Consensus 38 ~~~~i~~~~~p~~~~~~~~~~~~~i~~~~i~~---lg~~~~~~~~~~~~i~~~~~~~~~~gl~~~~~~~is~~~~~~~~- 113 (512)
.-+++++.+.....+.+...+.+--|..++.. ...++-|.|+++.+.-+++.=.+...+..+.....++...++++
T Consensus 251 fd~~~l~l~~~~~~Qsi~K~lLTEGdk~vl~~~~~~t~~~QGvY~lv~N~GSLvaR~lF~PiEEs~~~~Fsk~l~~~~~~ 330 (549)
T PF04506_consen 251 FDRDLLSLTWSFFFQSILKHLLTEGDKLVLSFFNLLTFEDQGVYALVSNYGSLVARLLFQPIEESSRLYFSKLLSRDNSK 330 (549)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhhCCeEEEEeeccCCHHHhhHHHHHhhHHHHHHHHHhCcHHHHHHHHHHHHhcccCch
Confidence 34788899999999999999999999999998 45889999999999999877777888888888888888765543
Q ss_pred --------chHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh
Q 010345 114 --------HMLGIHMQRGMFVLLLISVPLALI-WANTESLLVAAHQDSEISKEAGLYARYMIPSIFAYAILQCLVRFLQT 184 (512)
Q Consensus 114 --------~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~ 184 (512)
++..+.+...+.+...+++++..+ ...++.++.++.++.-..+.+...++..+..+|+.+++.+.-++.++
T Consensus 331 ~~~~~~~~~~~~~~l~~ll~~~~~~gl~~~~fG~~~s~~lL~~~~g~~w~~~~~~~~l~~yc~yi~~la~NGi~EaF~~s 410 (549)
T PF04506_consen 331 KKQPQESLKQAANVLSNLLKFYLYLGLVIVAFGPPYSPLLLRLLGGSRWSSTSAPSLLRAYCYYIPFLAINGITEAFVFS 410 (549)
T ss_pred hhccchhHHHHHHHHHHHHHHHHHHHHHHHHhChhhHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHccHHHHHHHH
Confidence 335556777777777777776666 55677777777554333344567789999999999999999999998
Q ss_pred cCchhhHHHH---HHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHh
Q 010345 185 QNIVFPMVLS---SGITALLHILVCWILVFKSGLGSRGAALANSISYWINVLLLAIYVKF 241 (512)
Q Consensus 185 ~~~~~~~~~~---~~~~~~~~i~l~~~li~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~ 241 (512)
....+..... .....++-+..++++... ++|..|..+|+++...+-.+++..+.++
T Consensus 411 ~a~~~~l~~~~~~m~~~S~~f~~~~~~l~~~-~~G~~GlI~AN~iNM~lRI~ys~~fI~~ 469 (549)
T PF04506_consen 411 VASESQLDRYNYWMVVFSAIFLAASYLLTRW-GLGAVGLILANCINMSLRIIYSLRFIRR 469 (549)
T ss_pred hCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 8776654443 444445566777888754 7899999999999999998888888854
No 41
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein
Probab=98.24 E-value=0.00081 Score=62.24 Aligned_cols=164 Identities=15% Similarity=0.201 Sum_probs=105.3
Q ss_pred HHHHHhcCCChhhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010345 284 MVLLSGLLPNPALETSVLSISLNTASTVWMIP-FGLSGAASTRVSNELGAGHPEAARLAVCVVLVMAVTEGILVGSVLIL 362 (512)
Q Consensus 284 ~~~~~~~l~~g~~~~a~~~~~~~i~~~~~~~~-~~l~~a~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~ 362 (512)
...++++.- ++++.|.|+....+..+...+. .++.+...- ..++|+++.++..+..........+...++
T Consensus 7 ~~~~lar~l-~~~~~G~~~~~~s~~~~~~~~~~~g~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 77 (251)
T PF13440_consen 7 FLILLARYL-GPEDFGIYALIFSIVSILSIVASLGLRQSLVR-----SAARDKQDIRSLLRFSLLVSLLLAVILAIL--- 77 (251)
T ss_pred HHHHHHHHC-CHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hhccCHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 344555554 2889999999999988877763 344443332 234556666666666555544444433332
Q ss_pred hhhhhhhhccCcHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccCcchhhHHHHHHHHHHhhHHHHHHHHHHhcCCch
Q 010345 363 IRNVWGYAYSNEIEVVKYVASMLPILAASNFLDGLQCVLSGIARGCGWQMIGAFVNLGSYYLVGIPSAILLAFLLHFGGR 442 (512)
Q Consensus 363 ~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l~~~l~~~~~~g~~ 442 (512)
...+...+ ++++ ...++.+.++..++..+.......+++.+|.+.......... +....+...+. ..+.+..
T Consensus 78 -~~~~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~ 149 (251)
T PF13440_consen 78 -AILIAYFF-GDPE----LFWLLLLLALAIFFSALSQLFRSILRARGRFRAYALIDIVRS-LLRLLLLVLLL-YLGLNLW 149 (251)
T ss_pred -HHHHHHHh-CChh----HHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHH-HHHHHHHHHHH-HHHhhHH
Confidence 23333333 3333 244566777788888999999999999999999999988884 44433333332 3233788
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH
Q 010345 443 GLWLGIICALIVQATSLGIITA 464 (512)
Q Consensus 443 G~~~a~~~~~~~~~~~~~~~~~ 464 (512)
+..++..++..+..+......+
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~ 171 (251)
T PF13440_consen 150 SILLAFIISALLALLISFYLLR 171 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 8899988888887776665444
No 42
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide. The family includes RfbX part of the O antigen biosynthesis operon [], and SpoVB from Bacillus subtilis (Q00758 from SWISSPROT), which is involved in spore cortex biosynthesis [].; GO: 0000271 polysaccharide biosynthetic process, 0016020 membrane
Probab=98.22 E-value=0.0012 Score=61.92 Aligned_cols=185 Identities=18% Similarity=0.117 Sum_probs=110.8
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhcCCChHHHHHHHHHH
Q 010345 267 AIPSAVMVCLEMWSFEMMVLLSGLLPNPALETSVLSISLNTASTVWMI-PFGLSGAASTRVSNELGAGHPEAARLAVCVV 345 (512)
Q Consensus 267 ~~p~~~~~~~~~~~~~~~~~~~~~l~~g~~~~a~~~~~~~i~~~~~~~-~~~l~~a~~~~~~~~~g~~~~~~~~~~~~~~ 345 (512)
+......+....+.......++.+.- |+++.|.|+....+.++...+ ..+++++..-..+++..+ .+..++.....
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~il~r~l-~~~~~G~~~~~~~~~~~~~~~~~~G~~~~~~r~~~~~~~~--~~~~~~~~~~~ 81 (273)
T PF01943_consen 5 SLWLFLSNILSALIGFITIPILARYL-GPEEYGIYSLALSIVSLLSILADLGLSQAIVRFIAEYKDK--KELRSAYFSSV 81 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh-CHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh--HHHHHHHHHHH
Confidence 33444445555444445555555554 289999999999999887776 558888888777775432 23333333333
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhccCcHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccCcchhhHHHHHHHHHHh
Q 010345 346 LVMAVTEGILVGSVLILIRNVWGYAYSNEIEVVKYVASMLPILAASNFLDGLQCVLSGIARGCGWQMIGAFVNLGSYYLV 425 (512)
Q Consensus 346 ~~~~~~i~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~ 425 (512)
..... +...+... ...+...+.. ++.. ..+........++..........+++.++.+.....++... +.
T Consensus 82 ~~~~~-~~~~i~~~----~~~~~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 151 (273)
T PF01943_consen 82 LFLLL-IFSLIFLL----ILLIASFFGN-PSLS---LILIILALLILILSSLSSVFSGLLQGLQRFKYIAISNIISS-LL 151 (273)
T ss_pred HHHHH-HHHHHHHH----HHHHHHHcCC-chHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH
Confidence 32222 22222222 2222223333 3221 11222222222577888888999999999999888888874 55
Q ss_pred hHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHH
Q 010345 426 GIPSAILLAFLLHFGGRGLWLGIICALIVQATSLGIITAR 465 (512)
Q Consensus 426 ~i~l~~~l~~~~~~g~~G~~~a~~~~~~~~~~~~~~~~~~ 465 (512)
...+.+.+... ..+..+..++..++..+...+.....+|
T Consensus 152 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (273)
T PF01943_consen 152 SLLLILLLLFL-GSSLWGFLLGLVISSLVSLIISLFYLRR 190 (273)
T ss_pred HHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555544433 3348888999999998888877777765
No 43
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences. The ANK protein spans the outer cell membrane and shuttles inorganic pyrophosphate (PPi), a major inhibitor of physiologic and pathologic calcification, bone mineralisation and bone resorption []. Mutations in ANK are thought to give rise to Craniometaphyseal dysplasia (CMD) which is a rare skeletal disorder characterised by progressive thickening and increased mineral density of craniofacial bones and abnormally developed metaphyses in long bones [].; GO: 0015114 phosphate ion transmembrane transporter activity, 0035435 phosphate ion transmembrane transport, 0016021 integral to membrane
Probab=97.96 E-value=0.014 Score=53.88 Aligned_cols=170 Identities=13% Similarity=0.080 Sum_probs=116.2
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhc-CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCh
Q 010345 257 LNNVFNFVRLAIPSAVMVCLEMWSFEMMVLLSGL-LPNPALETSVLSISLNTASTVWMIPFGLSGAASTRVSNELGAGHP 335 (512)
Q Consensus 257 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~-l~~g~~~~a~~~~~~~i~~~~~~~~~~l~~a~~~~~~~~~g~~~~ 335 (512)
...++++.++.+|.+++.....+...+.+.-+++ ..+..+.+|+|+++..+.-++..+...+-++....+.+ +.
T Consensus 7 ~~~y~~li~F~iPLa~ts~~~dl~~qiiNagLAr~~e~~vetLAsfglA~sL~lf~~sp~~~~~~igl~~V~s-----~r 81 (345)
T PF07260_consen 7 LTSYWPLIRFFIPLAITSLAMDLGEQIINAGLARVQEDPVETLASFGLAYSLMLFFASPLSMFHHIGLVFVNS-----KR 81 (345)
T ss_pred cchHHHHHHHHHHHHHHHHHHhccHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhChhhhhHHHHHHHhcc-----hh
Confidence 4568899999999999999999999999888876 44445679999999999999999988887776666543 22
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHhhh-hhhhhccCcHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccCcchh
Q 010345 336 EAARLAVCVVLVMAVTEGIL-VGSVLILIRN-VWGYAYSNEIEVVKYVASMLPILAASNFLDGLQCVLSGIARGCGWQMI 413 (512)
Q Consensus 336 ~~~~~~~~~~~~~~~~i~~~-~~~~l~~~~~-~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~ 413 (512)
++ ++........+...... ..+..--+.+ .+.+++.-|+++.+.+...+.++.+..+++++.....+++.--+++..
T Consensus 82 sr-r~~vl~~~vag~v~avi~~LIa~TpLG~~li~~lhgVs~~va~~tr~a~l~L~llPfl~alr~~~qGILik~r~s~i 160 (345)
T PF07260_consen 82 SR-RKAVLCMAVAGAVAAVIHLLIAWTPLGNYLINDLHGVSPSVAEKTRRAFLYLTLLPFLDALRWIHQGILIKHRHSWI 160 (345)
T ss_pred hh-HHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhccceeE
Confidence 22 22222222222222111 1111122222 245556678899999999999999999999999999988885566666
Q ss_pred hHHHHHHHHHHhhHHHHHHH
Q 010345 414 GAFVNLGSYYLVGIPSAILL 433 (512)
Q Consensus 414 ~~~~~~~~~~~~~i~l~~~l 433 (512)
....++.. ....+.....+
T Consensus 161 V~~aSI~~-v~~qvV~v~~l 179 (345)
T PF07260_consen 161 VGSASIAD-VIAQVVLVAIL 179 (345)
T ss_pred eehHHHHH-HHHHHHHHHHH
Confidence 66666555 34444433333
No 44
>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.93 E-value=0.00082 Score=64.59 Aligned_cols=202 Identities=11% Similarity=0.041 Sum_probs=145.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc---cChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccch
Q 010345 39 VKRQLWLSGPLISVSLLQFCLQMISVMFVGH---LGELPLSGASMATSFATVTGFSFLVGLSSALETLCGQSYGAKQYHM 115 (512)
Q Consensus 39 ~~~i~~~~~p~~~~~~~~~~~~~i~~~~i~~---lg~~~~~~~~~~~~i~~~~~~~~~~gl~~~~~~~is~~~~~~~~~~ 115 (512)
-++..+.......+.+...+.+-=|.++++- ++-++=|.|.+..+.-+++.=.+...+......+.+|...++++|+
T Consensus 238 d~d~~~~~~s~~~Qs~lKqlLTeGdkyvmt~~~~ls~~~QgvYd~v~n~GSLlaR~iF~PIEEss~~~FA~~ls~~~qe~ 317 (530)
T KOG2864|consen 238 DNDLLKLTKSFTFQSFLKQLLTEGDKYVMTFTELLSFGDQGVYDLVSNYGSLLARLIFRPIEESSYIYFARLLSRDNQEN 317 (530)
T ss_pred cHHHHHHHHHHHHHHHHHHHhhcccceeEeeeccCCcchhhHHHHHHhhhhHHHHHHhChhHHHHHHHHHHHhhccchhh
Confidence 3566667777777888888888888888883 5566778888888888777677777888888888888887777766
Q ss_pred HHHH---HHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCchhhH
Q 010345 116 LGIH---MQRGMFVLLLISVPLALI-WANTESLLVAAHQDSEISKEAGLYARYMIPSIFAYAILQCLVRFLQTQNIVFPM 191 (512)
Q Consensus 116 ~~~~---~~~~~~~~~~~~i~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 191 (512)
.++. ....+.....+|+.+..+ .--+.+.+.+.+++.-....+...+++.+..+|+.+++.+.-+++.+....+..
T Consensus 318 ~k~a~~vL~~lLklv~~igli~~~FG~~YS~~vL~lygG~kwss~~~~~lL~~YclYI~~lAiNGitEaF~~A~~t~~qi 397 (530)
T KOG2864|consen 318 VKKAVDVLSNLLKLVIYIGLIFITFGPAYSYVVLLLYGGSKWSSGGGSLLLSWYCLYIPFLAINGITEAFAFAVATSRQI 397 (530)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCccccHHHHHHHcCccccCCCchHHHHHHHHHHHHHHhccHHHHHHHHhccHHHH
Confidence 6554 445555555556554444 345666777776654434445577999999999999999999999888766543
Q ss_pred ---HHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHhC
Q 010345 192 ---VLSSGITALLHILVCWILVFKSGLGSRGAALANSISYWINVLLLAIYVKFS 242 (512)
Q Consensus 192 ---~~~~~~~~~~~i~l~~~li~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~ 242 (512)
........+.-+++++++.. .+|..|..+|+++...+-.+....++++.
T Consensus 398 ~~~n~~mlafSviflilsylL~~--~~~~~GlIlANiiNm~lRIlys~~fI~~~ 449 (530)
T KOG2864|consen 398 DKHNKFMLAFSVIFLILSYLLIR--WFGLVGLILANIINMSLRILYSLRFIRHY 449 (530)
T ss_pred HhcccchhHHHHHHHHHHHHHHH--HhchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555666788888885 56778988888888877777776666543
No 45
>COG4267 Predicted membrane protein [Function unknown]
Probab=97.49 E-value=0.097 Score=49.50 Aligned_cols=318 Identities=11% Similarity=0.044 Sum_probs=183.0
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCCHHHHHHHHHHHHHHhhhH
Q 010345 90 FSFLVGLSSALETLCGQSYGAKQYHMLGIHMQRGMFVLLLISVPLALIWANTESLLVAAHQDSEISKEAGLYARYMIPSI 169 (512)
Q Consensus 90 ~~~~~gl~~~~~~~is~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~ 169 (512)
..++.|+....++.+|...=++|.+++...+..+..+....+..+..+.. ...++... .|=.......
T Consensus 74 ~IiTgg~q~iiTRfiSD~lF~k~~~kIlpsy~Gvi~lv~~~a~~ig~~vf-------~~~~~~si-----~yk~l~~~~F 141 (467)
T COG4267 74 QIITGGFQLIITRFISDCLFEKKQRKILPSYIGVILLVTLVAGVIGLIVF-------FVNNQYSI-----VYKILACALF 141 (467)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHhh-------hhcCchhH-----HHHHHHHHHH
Confidence 55678899999999999888888777766665555555444444432211 11222211 1112234445
Q ss_pred HHHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHhCccccccc
Q 010345 170 FAYAILQCLVRFLQTQNIVFPMVLSSGITALLHILVCWILVFKSGLGSRGAALANSISYWINVLLLAIYVKFSSSCAKTW 249 (512)
Q Consensus 170 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~l~~~li~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~ 249 (512)
...+..-+...++.+.+|.+...+.-.++.++.+.+..++- +.+..|..++..++..+.......+..+.-+-++ .
T Consensus 142 V~m~~~Wi~~iFlS~lK~y~~iv~sF~iG~~~sv~La~~~~---~~~ie~lLL~~~IGi~~i~~l~~~~Ilr~fk~~~-~ 217 (467)
T COG4267 142 VGMSLVWILMIFLSGLKKYKLIVLSFFIGYVVSVLLARLFL---KSPIEGLLLTLDIGIFIILFLLNFYILRYFKSSR-R 217 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhHHHHHHHHHHHhHHHHHHHHHHHHHHhccccc-c
Confidence 55566666777889999999999999999999888887776 5699999999999999988888777754322111 1
Q ss_pred cCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCChhhHHHH------HHHHHHHHHHHHHHHH-----HH
Q 010345 250 TGFSKEALNNVFNFVRLAIPSAVMVCLEMWSFEMMVLLSGLLPNPALETSV------LSISLNTASTVWMIPF-----GL 318 (512)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~g~~~~a~------~~~~~~i~~~~~~~~~-----~l 318 (512)
..++.. +. .+--....+..+...++-++|+.+.=+-++|.+..+. |.++.-...+...|.. .+
T Consensus 218 i~FdFL--~~----~~~y~SLllIg~FY~lgiwid~FifW~~~~~~~Iag~~~~S~lYDvpiF~ayl~~iPs~vvF~i~l 291 (467)
T COG4267 218 IGFDFL--LY----RRKYPSLLLIGFFYNLGIWIDNFIFWKVPTGIEIAGPFFASPLYDVPIFYAYLFIIPSMVVFLISL 291 (467)
T ss_pred cceehh--hh----hhcchHHHHHHHHHHhHhhhhheeeEecCCCCEeecceecchhhhHHHHHHHHHhcchhheeeeee
Confidence 122221 11 1222233445566666666776655443333222222 3333322233233322 22
Q ss_pred HHHHHHHHHHhh----cCC-------ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCcHhHHHHHHHHHHH
Q 010345 319 SGAASTRVSNEL----GAG-------HPEAARLAVCVVLVMAVTEGILVGSVLILIRNVWGYAYSNEIEVVKYVASMLPI 387 (512)
Q Consensus 319 ~~a~~~~~~~~~----g~~-------~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~l~i 387 (512)
.+...+.--+.+ |.+ +.++.....++.+.-.+-+-...++.++++++.+..++.-++. ..++..+
T Consensus 292 ET~F~~~Yk~~y~~I~~g~tl~~I~~~~~kMiltlrq~i~~~~~lQ~~a~l~~flL~~~Ll~~~~lS~~----~l~lF~v 367 (467)
T COG4267 292 ETDFQENYKEYYQAIRGGGTLREIENNLKKMILTLRQGILEIMELQMLASLLCFLLADALLLWFGLSEY----YLDLFYV 367 (467)
T ss_pred eehHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHH----HHHHHHH
Confidence 233333222211 112 2333444555555556666677788889999999998876542 3445555
Q ss_pred HHHHHHHhhHHHHHHHHHhccCcchhhHHHHHHHHHHhhHHHHHHHH
Q 010345 388 LAASNFLDGLQCVLSGIARGCGWQMIGAFVNLGSYYLVGIPSAILLA 434 (512)
Q Consensus 388 ~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l~~~l~ 434 (512)
-..+.-.........++.--..+-+..+-.+..- .+.+-.+.++..
T Consensus 368 d~lg~s~~i~f~~ll~i~lyfd~r~i~l~~t~~f-li~N~ilT~i~l 413 (467)
T COG4267 368 DVLGVSCQIVFMSLLNIFLYFDYRRIALELTALF-LISNGILTFIFL 413 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHH-HHHhHHHHHHHH
Confidence 5555555555555555555555556565555444 455555665553
No 46
>COG4267 Predicted membrane protein [Function unknown]
Probab=68.45 E-value=1.2e+02 Score=29.55 Aligned_cols=137 Identities=15% Similarity=0.064 Sum_probs=83.7
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCcHhHHHHHHHHHHHHHHH
Q 010345 312 WMIPFGLSGAASTRVSNELGAGHPEAARLAVCVVLVMAVTEGILVGSVLILIRNVWGYAYSNEIEVVKYVASMLPILAAS 391 (512)
Q Consensus 312 ~~~~~~l~~a~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~ 391 (512)
..+..+++-...-.+++.+=++|.+++.....-...+....+..++..+ - +.+++ .. ..+=...+..
T Consensus 74 ~IiTgg~q~iiTRfiSD~lF~k~~~kIlpsy~Gvi~lv~~~a~~ig~~v--------f-~~~~~--~s--i~yk~l~~~~ 140 (467)
T COG4267 74 QIITGGFQLIITRFISDCLFEKKQRKILPSYIGVILLVTLVAGVIGLIV--------F-FVNNQ--YS--IVYKILACAL 140 (467)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHh--------h-hhcCc--hh--HHHHHHHHHH
Confidence 3344566666666667666666666666665555555554444444211 1 12222 11 1121223344
Q ss_pred HHHhhHHHHHHHHHhccCcchhhHHHHHHHHHHhhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHH
Q 010345 392 NFLDGLQCVLSGIARGCGWQMIGAFVNLGSYYLVGIPSAILLAFLLHFGGRGLWLGIICALIVQATSLGIITAR 465 (512)
Q Consensus 392 ~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l~~~l~~~~~~g~~G~~~a~~~~~~~~~~~~~~~~~~ 465 (512)
....+...+....+.+.+|.+.....-.++ ..+.+.++..+-.. +..|.-++.-++..+...+...+..+
T Consensus 141 FV~m~~~Wi~~iFlS~lK~y~~iv~sF~iG-~~~sv~La~~~~~~---~ie~lLL~~~IGi~~i~~l~~~~Ilr 210 (467)
T COG4267 141 FVGMSLVWILMIFLSGLKKYKLIVLSFFIG-YVVSVLLARLFLKS---PIEGLLLTLDIGIFIILFLLNFYILR 210 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHh---HHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 444555566677888999999888888777 67788888777554 88999999998887766665544443
No 47
>PF04505 Dispanin: Interferon-induced transmembrane protein; InterPro: IPR007593 This family includes the human leukocyte antigen CD225, which is an interferon inducible transmembrane protein, and is associated with interferon induced cell growth suppression [].; GO: 0009607 response to biotic stimulus, 0016021 integral to membrane
Probab=57.20 E-value=69 Score=23.55 Aligned_cols=41 Identities=22% Similarity=0.081 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHH
Q 010345 315 PFGLSGAASTRVSNELGAGHPEAARLAVCVVLVMAVTEGIL 355 (512)
Q Consensus 315 ~~~l~~a~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~~ 355 (512)
..-++-.....+.+.+.+||++++++.-+++.+++..-.+.
T Consensus 33 lGi~Ai~~s~kv~~~~~~Gd~~~A~~aS~~Ak~~~~ia~~~ 73 (82)
T PF04505_consen 33 LGIVAIVYSSKVRSRYAAGDYEGARRASRKAKKWSIIAIII 73 (82)
T ss_pred HHHHHheechhhHHHHHCCCHHHHHHHHHHhHHHHHHHHHH
Confidence 34445555667778888999999999999998888644333
No 48
>PF05975 EcsB: Bacterial ABC transporter protein EcsB; InterPro: IPR010288 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family consists of several bacterial ABC transporter proteins which are homologous to the EcsB protein of Bacillus subtilis. EcsB is thought to encode a hydrophobic protein with six membrane-spanning helices in a pattern found in other hydrophobic components of ABC transporters [].
Probab=36.80 E-value=4.3e+02 Score=26.14 Aligned_cols=40 Identities=10% Similarity=0.121 Sum_probs=30.1
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHH-HcCCC
Q 010345 112 QYHMLGIHMQRGMFVLLLISVPLALI-WANTESLLV-AAHQD 151 (512)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~i~~-~~~~~ 151 (512)
++++.+++++.+...+.....+...+ ....-|+.. ..+.+
T Consensus 89 ~e~~~~~y~~~a~~yS~~~~~~~~~~~~~ll~Pl~~~~~~~~ 130 (386)
T PF05975_consen 89 KESEMKQYFKRALRYSFVLQLLIQLLVFLLLLPLLMQVYGFS 130 (386)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 35789999999999999998887766 666667665 43433
No 49
>COG3162 Predicted membrane protein [Function unknown]
Probab=35.00 E-value=2e+02 Score=21.89 Aligned_cols=48 Identities=15% Similarity=0.230 Sum_probs=36.4
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cChhhHHH
Q 010345 30 SEKKKIIEEVKRQLWLSGPLISVSLLQFCLQMISVMFVGH-LGELPLSG 77 (512)
Q Consensus 30 ~~~~~~~~~~~~i~~~~~p~~~~~~~~~~~~~i~~~~i~~-lg~~~~~~ 77 (512)
...++.++..|+--++++|+.+..+...+...+-..+-.. +++...|+
T Consensus 10 ~a~p~f~eLv~kr~~Fa~~ltl~flv~Y~~filLiaf~~~~l~tp~~~~ 58 (102)
T COG3162 10 AANPRFRELVRKRRRFAVPLTLIFLVVYFGFILLIAFAPGWLATPLFGA 58 (102)
T ss_pred ccCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcCcccCC
Confidence 3345666777888889999999998888877777666665 77766666
No 50
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=34.12 E-value=1.8e+02 Score=28.32 Aligned_cols=39 Identities=10% Similarity=0.052 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccC-hhhHHHHHHHHH
Q 010345 45 LSGPLISVSLLQFCLQMISVMFVGHLG-ELPLSGASMATS 83 (512)
Q Consensus 45 ~~~p~~~~~~~~~~~~~i~~~~i~~lg-~~~~~~~~~~~~ 83 (512)
.......--..+....+.+...+..++ |-.++.+.....
T Consensus 50 ~~~~~~~wy~~s~~~~~~nK~vl~~~~~P~~l~~~~~~~~ 89 (350)
T PTZ00343 50 LALLFLTWYALNVLYVVDNKLALNMLPLPWTISSLQLFVG 89 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHH
Confidence 333333444444555666777776666 666666554443
No 51
>PF05975 EcsB: Bacterial ABC transporter protein EcsB; InterPro: IPR010288 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family consists of several bacterial ABC transporter proteins which are homologous to the EcsB protein of Bacillus subtilis. EcsB is thought to encode a hydrophobic protein with six membrane-spanning helices in a pattern found in other hydrophobic components of ABC transporters [].
Probab=31.91 E-value=5.1e+02 Score=25.58 Aligned_cols=39 Identities=8% Similarity=-0.035 Sum_probs=33.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccC
Q 010345 335 PEAARLAVCVVLVMAVTEGILVGSVLILIRNVWGYAYSN 373 (512)
Q Consensus 335 ~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~i~~~~~~ 373 (512)
.++.+++.+++...+........++..+..-|+...-.+
T Consensus 90 e~~~~~y~~~a~~yS~~~~~~~~~~~~~ll~Pl~~~~~~ 128 (386)
T PF05975_consen 90 ESEMKQYFKRALRYSFVLQLLIQLLVFLLLLPLLMQVYG 128 (386)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 578999999999999999999998888888887774433
No 52
>PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species.
Probab=29.02 E-value=4.6e+02 Score=25.93 Aligned_cols=102 Identities=13% Similarity=0.076 Sum_probs=48.1
Q ss_pred ccCcchhhHHHHHHHHHHhhHHHHHHHHHHhcC--CchhHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHH-hHHHHHH
Q 010345 407 GCGWQMIGAFVNLGSYYLVGIPSAILLAFLLHF--GGRGLWLGIICALIVQATSLGIITARTNWEKEVSHSF-YLFTFFF 483 (512)
Q Consensus 407 ~~g~~~~~~~~~~~~~~~~~i~l~~~l~~~~~~--g~~G~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 483 (512)
..+|++...+-.+.. .++......++....-+ ....-.+...-.+.+-..+.+..+... .++-.+... ....|..
T Consensus 13 le~~~~~~~f~~l~~-~vl~~~~~~~lsnlgli~~p~~s~~y~~v~~~~vPlai~LlLl~~D-lr~i~~~g~~~l~~F~~ 90 (378)
T PF05684_consen 13 LEQKTKWGFFKYLPG-AVLCYLLGMLLSNLGLIDSPASSPVYDFVWTYLVPLAIPLLLLSAD-LRRILRLGGRLLLAFLI 90 (378)
T ss_pred HhcchhhhhHhhcCH-HHHHHHHHHHHHHCCCcCCCCcchHHHHHHHHHHHHHHHHHHHHcc-HHHHHHhhHHHHHHHHH
Confidence 355666653333333 33334444444433222 333455566666666666555555443 333333333 2333433
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCC
Q 010345 484 LLVILCLTCVFNLFIFSYLISRPGKES 510 (512)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 510 (512)
-.+.++......++++.-.+..++|+.
T Consensus 91 ~~~g~viG~~va~~l~~~~l~~~~wk~ 117 (378)
T PF05684_consen 91 GAVGTVIGAVVAFLLFGGFLGPEGWKI 117 (378)
T ss_pred HHHHHHHHHHHHHHHHhhcccchHHHH
Confidence 344445555555566655545556653
No 53
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=24.70 E-value=3.2e+02 Score=24.53 Aligned_cols=37 Identities=19% Similarity=0.291 Sum_probs=18.3
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcC
Q 010345 113 YHMLGIHMQRGMFVLLLISVPLALIWANTESLLVAAH 149 (512)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~ 149 (512)
++...+.+..++...+++-.++++++.+..++..+++
T Consensus 143 y~k~~k~~~~gi~aml~Vf~LF~lvmt~g~d~m~fl~ 179 (230)
T PF03904_consen 143 YQKRQKSMYKGIGAMLFVFMLFALVMTIGSDFMDFLH 179 (230)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhcccchhhhh
Confidence 3334444444444444444444444555666666665
No 54
>PF10856 DUF2678: Protein of unknown function (DUF2678); InterPro: IPR022564 This family of proteins has no known function.
Probab=23.56 E-value=33 Score=26.84 Aligned_cols=27 Identities=19% Similarity=0.406 Sum_probs=14.2
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 010345 472 VSHSFYLFTFFFLLVILCLTCVFNLFI 498 (512)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 498 (512)
.+.+++...+....+++.++..-|+|.
T Consensus 87 l~Pkfr~li~~~~~~ivllci~anlYf 113 (118)
T PF10856_consen 87 LDPKFRYLIYYNCFSIVLLCICANLYF 113 (118)
T ss_pred CChhHHHHHHHHHHHHHHHHHhheeEE
Confidence 344455556666666665554444443
No 55
>PF05915 DUF872: Eukaryotic protein of unknown function (DUF872); InterPro: IPR008590 This entry represents several uncharacterised eukaryotic transmembrane proteins. The function of this currently unknown.
Probab=23.09 E-value=3e+02 Score=21.85 Aligned_cols=6 Identities=33% Similarity=0.462 Sum_probs=3.9
Q ss_pred Cccccc
Q 010345 1 MEREEQ 6 (512)
Q Consensus 1 ~~~~~~ 6 (512)
|||||.
T Consensus 6 ~~d~d~ 11 (115)
T PF05915_consen 6 NEDEDD 11 (115)
T ss_pred CCCccc
Confidence 567766
No 56
>TIGR00383 corA magnesium Mg(2+) and cobalt Co(2+) transport protein (corA). The article in Microb Comp Genomics 1998;3(3):151-69 (Medline:98448512) discusses this family and suggests that some members may have functions other than Mg2+ transport.
Probab=21.53 E-value=2.7e+02 Score=26.56 Aligned_cols=54 Identities=17% Similarity=0.182 Sum_probs=26.2
Q ss_pred hhhHHHHHHHHHHhhHHHHHHHHHHhcCC--------chhHHHHHHHHHHHHHHHHHHHHHHccH
Q 010345 412 MIGAFVNLGSYYLVGIPSAILLAFLLHFG--------GRGLWLGIICALIVQATSLGIITARTNW 468 (512)
Q Consensus 412 ~~~~~~~~~~~~~~~i~l~~~l~~~~~~g--------~~G~~~a~~~~~~~~~~~~~~~~~~~~~ 468 (512)
+..-..++++ ++..|+.++-+.+ +.+ ....++......++.++..+++++|++|
T Consensus 256 ~~mk~LTvvt--~IflP~t~IaGiy-GMNf~~mP~l~~~~gy~~~l~~m~~i~~~~~~~fkrk~W 317 (318)
T TIGR00383 256 EIMKILTVVS--TIFIPLTFIAGIY-GMNFKFMPELNWKYGYPAVLIVMAVIALGPLIYFRRKGW 317 (318)
T ss_pred HHHHHHHHHH--HHHHHHHHHHHHH-hCCcccCccccchhHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 3344455554 3445666654433 111 1122333333444445556777777776
No 57
>PRK10582 cytochrome o ubiquinol oxidase subunit IV; Provisional
Probab=21.50 E-value=4.1e+02 Score=20.87 Aligned_cols=53 Identities=17% Similarity=0.248 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 010345 445 WLGIICALIVQATSLGIITARTNWEKEVSHSFYLFTFFFLLVILCLTCVFNLFIF 499 (512)
Q Consensus 445 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 499 (512)
........+++.++...++-+.+.+ .++..+...+.+-+++.+....+..|++
T Consensus 47 ~~~i~~lA~vQi~VqL~~FLHl~~~--~~~~wn~~al~Ft~~i~~iiv~GSlWIM 99 (109)
T PRK10582 47 LGTILAMAVVQILVHLVCFLHMNTK--SDEGWNMTAFVFTVLIIAILVVGSIWIM 99 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccCC--cccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455667777777777664422 2223333444444455555555666664
No 58
>PRK09546 zntB zinc transporter; Reviewed
Probab=20.19 E-value=3.1e+02 Score=26.29 Aligned_cols=49 Identities=16% Similarity=0.204 Sum_probs=23.8
Q ss_pred HHHHHHHHhhHHHHHHHHHHhcCC---ch-----hHHHHHHHHHHHHHHHHHHHHHHccH
Q 010345 417 VNLGSYYLVGIPSAILLAFLLHFG---GR-----GLWLGIICALIVQATSLGIITARTNW 468 (512)
Q Consensus 417 ~~~~~~~~~~i~l~~~l~~~~~~g---~~-----G~~~a~~~~~~~~~~~~~~~~~~~~~ 468 (512)
.++++ .+.+|+.++-+.+ +.+ +. -.++..+...++.++..+++++|++|
T Consensus 267 Ltilt--~IflPlT~IaGiy-GMNf~~mPel~~~~gy~~~l~im~~i~~~~~~~fkrk~W 323 (324)
T PRK09546 267 MSLMA--MVFLPTTFLTGLF-GVNLGGIPGGGWPFGFSIFCLLLVVLIGGVAWWLKRSKW 323 (324)
T ss_pred HHHHH--HHHHHHHHHHhhh-ccccCCCCCcCCcchHHHHHHHHHHHHHHHHHHHHhccc
Confidence 44444 3445777765443 111 11 22333333344445556667777766
Done!