Query 010345
Match_columns 512
No_of_seqs 253 out of 2134
Neff 10.3
Searched_HMMs 29240
Date Mon Mar 25 04:47:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010345.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010345hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mkt_A Multi antimicrobial ext 100.0 2.2E-48 7.6E-53 395.1 34.4 433 33-468 5-448 (460)
2 3mkt_A Multi antimicrobial ext 99.8 5.8E-20 2E-24 185.9 19.5 206 36-242 234-446 (460)
3 1pw4_A Glycerol-3-phosphate tr 91.7 10 0.00034 36.6 36.4 24 438-461 409-432 (451)
4 4aps_A DI-OR tripeptide H+ sym 86.1 26 0.0009 34.1 27.8 58 402-460 412-469 (491)
5 3o7q_A L-fucose-proton symport 76.6 53 0.0018 31.2 33.5 45 41-85 27-73 (438)
6 4ev6_A Magnesium transport pro 23.9 1.2E+02 0.0041 28.0 6.0 50 416-468 281-338 (339)
7 4aps_A DI-OR tripeptide H+ sym 22.9 3.3E+02 0.011 25.9 9.5 25 184-208 417-441 (491)
8 4hkr_A Calcium release-activat 18.2 4.3E+02 0.015 22.2 14.4 81 71-152 56-144 (214)
9 2jwa_A Receptor tyrosine-prote 16.8 1.4E+02 0.0047 18.2 3.0 7 235-241 31-37 (44)
10 2l2t_A Receptor tyrosine-prote 15.9 2E+02 0.0069 17.4 3.6 32 217-248 12-43 (44)
No 1
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A
Probab=100.00 E-value=2.2e-48 Score=395.07 Aligned_cols=433 Identities=25% Similarity=0.412 Sum_probs=397.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Q 010345 33 KKIIEEVKRQLWLSGPLISVSLLQFCLQMISVMFVGHLGELPLSGASMATSFATVTGFSFLVGLSSALETLCGQSYGAKQ 112 (512)
Q Consensus 33 ~~~~~~~~~i~~~~~p~~~~~~~~~~~~~i~~~~i~~lg~~~~~~~~~~~~i~~~~~~~~~~gl~~~~~~~is~~~~~~~ 112 (512)
.+.++..|++++.++|.+++++...+.+.+|+.+++|+|++++|+++.+.++..+. ..+..|++.+..+.++++.|++|
T Consensus 5 ~~~~~~~k~~~~~~~p~~~~~~~~~~~~~v~~~~~~~lg~~~~~~~~~~~~i~~~~-~~~~~g~~~~~~~~is~~~g~~~ 83 (460)
T 3mkt_A 5 HRYKKEASNLIKLATPVLIASVAQTGMGFVDTIMAGGVSAIDMAAVSIAASIWLPS-ILFGVGLLMALVPVVAQLNGAGR 83 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTTTTSSHHHHHHHHHHHH-HHHHHHHHHHHGGGCTTTTSSSS
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHcCCC
Confidence 34567889999999999999999999999999999999999999999999998877 77889999999999999999999
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCchhhHH
Q 010345 113 YHMLGIHMQRGMFVLLLISVPLALIWANTESLLVAAHQDSEISKEAGLYARYMIPSIFAYAILQCLVRFLQTQNIVFPMV 192 (512)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 192 (512)
+|+.++.+++++.+....+++..++.++.++++..++.+++..+.+..|+++..++.++........+.+|+.||++.++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 163 (460)
T 3mkt_A 84 QHKIPFEVHQGLILALLVSVPIIAVLFQTQFIIRFMDVEEAMATKTVGYMHAVIFAVPAYLLFQALRSFTDGMSLTKPAM 163 (460)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCSSTTHHHHHHHHHHTTGGGHHHHHHHHHHHTTTTCTTSCCTTTH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHH
Confidence 99999999999999999999877767788899888888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHh----cCCCcchhHHHHHHHHHHHHHHHHHHHHhCccccc-c-ccCccHHHHHHHHHHHHH
Q 010345 193 LSSGITALLHILVCWILVFK----SGLGSRGAALANSISYWINVLLLAIYVKFSSSCAK-T-WTGFSKEALNNVFNFVRL 266 (512)
Q Consensus 193 ~~~~~~~~~~i~l~~~li~~----~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~ 266 (512)
..++++.++|+++++++++. +++|+.|+++|+.+++.+..+...++.+++++.+. + +++..+.+++..|+++++
T Consensus 164 ~~~~~~~~~~i~l~~~li~~~~~~p~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 243 (460)
T 3mkt_A 164 VIGFIGLLLNIPLNWIFVYGKFGAPELGGVGCGVATAIVYWIMLLLLLFYIVTSKRLAHVKVFETFHKPQPKELIRLFRL 243 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHSCCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCCCSCCCCSSTTSSTTTSHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHhCcchhhhhhhhcccccCHHHHHHHHHH
Confidence 99999999999999999975 27999999999999999999998888876554321 1 122223356789999999
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHH
Q 010345 267 AIPSAVMVCLEMWSFEMMVLLSGLLPNPALETSVLSISLNTASTVWMIPFGLSGAASTRVSNELGAGHPEAARLAVCVVL 346 (512)
Q Consensus 267 ~~p~~~~~~~~~~~~~~~~~~~~~l~~g~~~~a~~~~~~~i~~~~~~~~~~l~~a~~~~~~~~~g~~~~~~~~~~~~~~~ 346 (512)
+.|..+++....+.+..++.++++++ ++++|+|++++++.++...+..+++++..|.+++++|++|+++.++..+++.
T Consensus 244 ~~p~~~~~~~~~~~~~~~~~~~~~~g--~~~va~~~i~~~i~~~~~~~~~~~~~a~~p~i~~~~g~~~~~~~~~~~~~~~ 321 (460)
T 3mkt_A 244 GFPVAAALFFEVTLFAVVALLVAPLG--STVVAAHQVALNFSSLVFMFPMSIGAAVSIRVGHKLGEQDTKGAAIAANVGL 321 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCTTS--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCCTTTTHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHcC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 99999999999999999999999995 7899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhccCcHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccCcchhhHHHHHHHHHHhh
Q 010345 347 VMAVTEGILVGSVLILIRNVWGYAYSNEIEVVKYVASMLPILAASNFLDGLQCVLSGIARGCGWQMIGAFVNLGSYYLVG 426 (512)
Q Consensus 347 ~~~~~i~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~ 426 (512)
+++..++++.++++.++++++..+|.+|+++.+.+..++++++++.++.+++.+..+++++.||++.+++.++.+.++++
T Consensus 322 ~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~ 401 (460)
T 3mkt_A 322 MTGLATACITALLTVLFREQIALLYTENQVVVALAMQLLLFAAIYQCMDAVQVVAAGSLRGYKDMTAIFHRTFISYWVLG 401 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCSSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998889999999999999999999999999999999999999999999977999
Q ss_pred HHHHHHHHHH----hc-CCchhHHHHHHHHHHHHHHHHHHHHHHccH
Q 010345 427 IPSAILLAFL----LH-FGGRGLWLGIICALIVQATSLGIITARTNW 468 (512)
Q Consensus 427 i~l~~~l~~~----~~-~g~~G~~~a~~~~~~~~~~~~~~~~~~~~~ 468 (512)
+|+++++.+. ++ +|..|+|+++.+++.+..++..++++|..+
T Consensus 402 i~l~~~l~~~~~~~~~~~G~~G~~~a~~~~~~~~~~~~~~~~~~~~~ 448 (460)
T 3mkt_A 402 LPTGYILGMTNWLTEQPLGAKGFWLGFIIGLSAAALMLGQRLYWLQK 448 (460)
T ss_dssp HHHHHHHHHHHTSSCCSSHHHHHHHHHHHHHHHHHHHHHSSSSSSCC
T ss_pred HHHHHHHHhhhhccccccCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999876 56 899999999999999999888777766543
No 2
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A
Probab=99.84 E-value=5.8e-20 Score=185.86 Aligned_cols=206 Identities=17% Similarity=0.191 Sum_probs=191.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccch
Q 010345 36 IEEVKRQLWLSGPLISVSLLQFCLQMISVMFVGHLGELPLSGASMATSFATVTGFSFLVGLSSALETLCGQSYGAKQYHM 115 (512)
Q Consensus 36 ~~~~~~i~~~~~p~~~~~~~~~~~~~i~~~~i~~lg~~~~~~~~~~~~i~~~~~~~~~~gl~~~~~~~is~~~~~~~~~~ 115 (512)
++..|++++.+.|..++++...+...+|+.+++++|++++|+|+++.++.++. ..+..+++++..|.+++..|++|+|+
T Consensus 234 ~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~va~~~i~~~i~~~~-~~~~~~~~~a~~p~i~~~~g~~~~~~ 312 (460)
T 3mkt_A 234 PKELIRLFRLGFPVAAALFFEVTLFAVVALLVAPLGSTVVAAHQVALNFSSLV-FMFPMSIGAAVSIRVGHKLGEQDTKG 312 (460)
T ss_dssp TSSTTTSHHHHHHHHHHHHHHHHHHHHHHHHTCTTSSHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHSSCCCT
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHcCCCHHH
Confidence 45679999999999999999999999999999999999999999999999998 78899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCchhhHHHH
Q 010345 116 LGIHMQRGMFVLLLISVPLALI-WANTESLLVAAHQDSEISKEAGLYARYMIPSIFAYAILQCLVRFLQTQNIVFPMVLS 194 (512)
Q Consensus 116 ~~~~~~~~~~~~~~~~i~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 194 (512)
.++..+.+..+...++++.+++ .++++++..++.+|++..+.+..++++..++.++..+.....+.+++.||++.++..
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~ 392 (460)
T 3mkt_A 313 AAIAANVGLMTGLATACITALLTVLFREQIALLYTENQVVVALAMQLLLFAAIYQCMDAVQVVAAGSLRGYKDMTAIFHR 392 (460)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHH
Confidence 9999999999999999998887 779999999998888888999999999999999999999999999999999999999
Q ss_pred HHHHH-HHHHHHHHHHHHh----cC-CCcchhHHHHHHHHHHHHHHHHHHHHhC
Q 010345 195 SGITA-LLHILVCWILVFK----SG-LGSRGAALANSISYWINVLLLAIYVKFS 242 (512)
Q Consensus 195 ~~~~~-~~~i~l~~~li~~----~~-~g~~g~~~a~~i~~~~~~~~~~~~~~~~ 242 (512)
++++. ++++++++++... ++ +|..|+++|+.+++.+..+...+..+|+
T Consensus 393 ~~~~~~~~~i~l~~~l~~~~~~~~~~~G~~G~~~a~~~~~~~~~~~~~~~~~~~ 446 (460)
T 3mkt_A 393 TFISYWVLGLPTGYILGMTNWLTEQPLGAKGFWLGFIIGLSAAALMLGQRLYWL 446 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSSCCSSHHHHHHHHHHHHHHHHHHHHHSSSSSS
T ss_pred HHHHHHHHHHHHHHHHHhhhhccccccCchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998 8999999999875 45 9999999999999999888776666443
No 3
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=91.66 E-value=10 Score=36.60 Aligned_cols=24 Identities=25% Similarity=0.321 Sum_probs=14.0
Q ss_pred cCCchhHHHHHHHHHHHHHHHHHH
Q 010345 438 HFGGRGLWLGIICALIVQATSLGI 461 (512)
Q Consensus 438 ~~g~~G~~~a~~~~~~~~~~~~~~ 461 (512)
..|....++......++..++...
T Consensus 409 ~~g~~~~~~~~~~~~~~~~~~~~~ 432 (451)
T 1pw4_A 409 FFGWDGGFMVMIGGSILAVILLIV 432 (451)
T ss_dssp SSCSHHHHHHHHHHHHHHHHHHHH
T ss_pred hcCcHHHHHHHHHHHHHHHHHHHH
Confidence 457777776666655555554443
No 4
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=86.11 E-value=26 Score=34.10 Aligned_cols=58 Identities=12% Similarity=-0.071 Sum_probs=24.3
Q ss_pred HHHHhccCcchhhHHHHHHHHHHhhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHH
Q 010345 402 SGIARGCGWQMIGAFVNLGSYYLVGIPSAILLAFLLHFGGRGLWLGIICALIVQATSLG 460 (512)
Q Consensus 402 ~~~l~~~g~~~~~~~~~~~~~~~~~i~l~~~l~~~~~~g~~G~~~a~~~~~~~~~~~~~ 460 (512)
........+.+.....+... .+.......+.....+.+....++.......+..++.+
T Consensus 412 ~~~~p~~~~g~~~g~~~~~~-~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (491)
T 4aps_A 412 TKLAPKAFNSQMMSMWFLSS-SVGSALNAQLVTLYNAKSEVAYFSYFGLGSVVLGIVLV 469 (491)
T ss_dssp HHHTTTTCSSSSTHHHHHHH-HHHHHHHHHHGGGGGGSSTTHHHHHTHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence 33333333444444444443 23333333333333344555555555444444444433
No 5
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=76.58 E-value=53 Score=31.17 Aligned_cols=45 Identities=9% Similarity=-0.019 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccC--hhhHHHHHHHHHHH
Q 010345 41 RQLWLSGPLISVSLLQFCLQMISVMFVGHLG--ELPLSGASMATSFA 85 (512)
Q Consensus 41 ~i~~~~~p~~~~~~~~~~~~~i~~~~i~~lg--~~~~~~~~~~~~i~ 85 (512)
.+.....-.................+..++| +.+.|.......+.
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~ 73 (438)
T 3o7q_A 27 PFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFG 73 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 3333444444444444455555445555544 55555544433333
No 6
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=23.85 E-value=1.2e+02 Score=27.99 Aligned_cols=50 Identities=8% Similarity=0.145 Sum_probs=26.4
Q ss_pred HHHHHHHHHhhHHHHHHHHHHhcCC--------chhHHHHHHHHHHHHHHHHHHHHHHccH
Q 010345 416 FVNLGSYYLVGIPSAILLAFLLHFG--------GRGLWLGIICALIVQATSLGIITARTNW 468 (512)
Q Consensus 416 ~~~~~~~~~~~i~l~~~l~~~~~~g--------~~G~~~a~~~~~~~~~~~~~~~~~~~~~ 468 (512)
..++++ ++.+|+.++-+.+ +.+ ....++......++.+++.+++++|++|
T Consensus 281 ~LTiit--~IflP~T~IaGiy-GMNf~~mPel~~~~gy~~~l~~m~~~~~~~~~~fkrk~W 338 (339)
T 4ev6_A 281 ILTMVT--TIFAVPMWITGIY-GMNFSYLPLANNPQGFWLVMALMVVIIMIFVYIFRRSGW 338 (339)
T ss_dssp HHHHHH--HHSSHHHHHHHHT-TCCCSCCTTSSCTTHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHH--HHHHHHHHHHhhc-cCcCCCCCCccCchHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 445444 4456777765543 222 1122333444455556667777777777
No 7
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=22.92 E-value=3.3e+02 Score=25.92 Aligned_cols=25 Identities=8% Similarity=-0.221 Sum_probs=11.4
Q ss_pred hcCchhhHHHHHHHHHHHHHHHHHH
Q 010345 184 TQNIVFPMVLSSGITALLHILVCWI 208 (512)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~i~l~~~ 208 (512)
...+.+..........+-..+...+
T Consensus 417 ~~~~g~~~g~~~~~~~~g~~i~~~~ 441 (491)
T 4aps_A 417 KAFNSQMMSMWFLSSSVGSALNAQL 441 (491)
T ss_dssp TTCSSSSTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444555555554444444333
No 8
>4hkr_A Calcium release-activated calcium channel protein; ORAI1, eukaryotic membrane protein, membran protein, ION channel, STIM, membrane; 3.35A {Drosophila melanogaster} PDB: 4hks_A
Probab=18.25 E-value=4.3e+02 Score=22.16 Aligned_cols=81 Identities=9% Similarity=-0.042 Sum_probs=49.8
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------CCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 010345 71 GELPLSGASMATSFATVTGFSFLVGLSSALETLCGQSY--------GAKQYHMLGIHMQRGMFVLLLISVPLALIWANTE 142 (512)
Q Consensus 71 g~~~~~~~~~~~~i~~~~~~~~~~gl~~~~~~~is~~~--------~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 142 (512)
.+.-+.+|+....+.-.+ ..+..-+++-..|.+-..- .+.-.++.+.+...+..++..+|+++.+.-+..-
T Consensus 56 p~~LLi~fav~Ttllv~v-ml~AlMIsTcILPnIeav~~~h~~~~v~esPH~r~~~yIE~AW~fST~lGi~LFL~evall 134 (214)
T 4hkr_A 56 PPGMLIAFAICTTLLVAV-HMLALMISTCILPNIETVSNLHSISLVHESPHERLHWYIETAWAFSTLLGLILFLLEIAIL 134 (214)
T ss_dssp ---CHHHHHHHHHHHHHH-HHHHHHHHHHTTTC----------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHH-HHHHHHHHHHhHHHHHHHhhcccccccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344577888888877766 6667777776666654432 2334568888999999999888888776644444
Q ss_pred HHHHHcCCCH
Q 010345 143 SLLVAAHQDS 152 (512)
Q Consensus 143 ~i~~~~~~~~ 152 (512)
-++.++..++
T Consensus 135 ~WVKF~~~~~ 144 (214)
T 4hkr_A 135 CWVKFYDLSR 144 (214)
T ss_dssp HHHHHTTTCH
T ss_pred heEEeecCCc
Confidence 4556665554
No 9
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=16.80 E-value=1.4e+02 Score=18.17 Aligned_cols=7 Identities=29% Similarity=0.458 Sum_probs=3.0
Q ss_pred HHHHHHh
Q 010345 235 LAIYVKF 241 (512)
Q Consensus 235 ~~~~~~~ 241 (512)
...+++|
T Consensus 31 ~~~~~RR 37 (44)
T 2jwa_A 31 FGILIKR 37 (44)
T ss_dssp HHHHHHH
T ss_pred HHhheeh
Confidence 3444443
No 10
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=15.87 E-value=2e+02 Score=17.43 Aligned_cols=32 Identities=22% Similarity=0.175 Sum_probs=0.0
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHhCcccccc
Q 010345 217 SRGAALANSISYWINVLLLAIYVKFSSSCAKT 248 (512)
Q Consensus 217 ~~g~~~a~~i~~~~~~~~~~~~~~~~~~~~~~ 248 (512)
+.+..++-++...+.....++++++++..+++
T Consensus 12 IA~gVVgGv~~v~ii~~~~~~~~RRRr~~~kr 43 (44)
T 2l2t_A 12 IAAGVIGGLFILVIVGLTFAVYVRRKSIKKKR 43 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCC
T ss_pred EEEeehHHHHHHHHHHHHHHHHhhhhhhhhcc
Done!