Query 010345
Match_columns 512
No_of_seqs 253 out of 2134
Neff 10.3
Searched_HMMs 13730
Date Mon Mar 25 04:48:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010345.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/010345hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1pw4a_ f.38.1.1 (A:) Glycerol 67.5 39 0.0029 29.6 19.3 26 214-239 406-431 (447)
2 d1pw4a_ f.38.1.1 (A:) Glycerol 42.6 1E+02 0.0073 26.6 38.8 29 437-465 405-433 (447)
3 d1m56d_ f.23.8.1 (D:) Bacteria 9.3 1.6E+02 0.012 16.1 4.3 35 329-363 3-37 (42)
4 d2iuba2 f.17.3.1 (A:286-349) M 7.9 1.8E+02 0.013 17.4 3.4 6 427-432 17-22 (64)
5 d1nkzb_ f.3.1.1 (B:) Light-har 5.9 2.4E+02 0.017 15.2 4.2 32 335-366 8-39 (41)
6 d2yvxa3 f.57.1.1 (A:276-448) M 3.6 7.6E+02 0.055 18.0 6.9 31 107-137 68-98 (173)
7 d1ijdb_ f.3.1.1 (B:) Light-har 2.9 4.4E+02 0.032 13.9 4.1 30 334-363 8-37 (40)
8 d1qled_ f.23.8.1 (D:) Bacteria 2.3 5.8E+02 0.042 13.9 5.1 33 330-362 5-37 (43)
9 d1fs1b1 a.157.1.1 (B:86-140) C 2.1 6.9E+02 0.05 14.2 2.9 26 95-120 29-54 (55)
10 d1lghb_ f.3.1.1 (B:) Light-har 1.9 6.7E+02 0.049 13.6 3.8 32 336-367 12-43 (43)
No 1
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=67.54 E-value=39 Score=29.62 Aligned_cols=26 Identities=19% Similarity=0.197 Sum_probs=13.0
Q ss_pred CCCcchhHHHHHHHHHHHHHHHHHHH
Q 010345 214 GLGSRGAALANSISYWINVLLLAIYV 239 (512)
Q Consensus 214 ~~g~~g~~~a~~i~~~~~~~~~~~~~ 239 (512)
+.|..+..+.......+..+......
T Consensus 406 ~~g~~~~~~~~~~~~~~~~~~~~~~~ 431 (447)
T d1pw4a_ 406 FFGWDGGFMVMIGGSILAVILLIVVM 431 (447)
T ss_dssp SSCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhChHHHHHHHHHHHHHHHHHHHHHH
Confidence 56665555544444444444444443
No 2
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=42.58 E-value=1e+02 Score=26.62 Aligned_cols=29 Identities=21% Similarity=0.228 Sum_probs=17.3
Q ss_pred hcCCchhHHHHHHHHHHHHHHHHHHHHHH
Q 010345 437 LHFGGRGLWLGIICALIVQATSLGIITAR 465 (512)
Q Consensus 437 ~~~g~~G~~~a~~~~~~~~~~~~~~~~~~ 465 (512)
...|..+.++......++..++......+
T Consensus 405 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (447)
T d1pw4a_ 405 DFFGWDGGFMVMIGGSILAVILLIVVMIG 433 (447)
T ss_dssp HSSCSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhChHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35677777776666666655555444443
No 3
>d1m56d_ f.23.8.1 (D:) Bacterial aa3 type cytochrome c oxidase subunit IV {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=9.26 E-value=1.6e+02 Score=16.12 Aligned_cols=35 Identities=11% Similarity=0.141 Sum_probs=20.5
Q ss_pred hhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010345 329 ELGAGHPEAARLAVCVVLVMAVTEGILVGSVLILI 363 (512)
Q Consensus 329 ~~g~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~ 363 (512)
..|.-|.+.-.+.+.--+++..-.++.+.+++.++
T Consensus 3 kHG~MDi~vQEKTF~gFik~~t~~~i~~i~~lifl 37 (42)
T d1m56d_ 3 VAGSMDITQQEKTFAGFVRMVTWAAVVIVAALIFL 37 (42)
T ss_dssp CTTCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666777666666665555554444433
No 4
>d2iuba2 f.17.3.1 (A:286-349) Magnesium transport protein CorA {Thermotoga maritima [TaxId: 2336]}
Probab=7.94 E-value=1.8e+02 Score=17.36 Aligned_cols=6 Identities=17% Similarity=0.689 Sum_probs=2.6
Q ss_pred HHHHHH
Q 010345 427 IPSAIL 432 (512)
Q Consensus 427 i~l~~~ 432 (512)
+|++++
T Consensus 17 lP~t~i 22 (64)
T d2iuba2 17 MPLTFI 22 (64)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444443
No 5
>d1nkzb_ f.3.1.1 (B:) Light-harvesting complex subunits {Purple bacterium (Rhodoblastus acidophilus) [TaxId: 1074]}
Probab=5.89 E-value=2.4e+02 Score=15.15 Aligned_cols=32 Identities=6% Similarity=-0.152 Sum_probs=23.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 010345 335 PEAARLAVCVVLVMAVTEGILVGSVLILIRNV 366 (512)
Q Consensus 335 ~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~ 366 (512)
-++..+....+.+....+++..=++.+...+|
T Consensus 8 aEElHk~vIdGtRvF~~iA~~AH~La~~~tPW 39 (41)
T d1nkzb_ 8 SEELHKYVIDGTRVFLGLALVAHFLAFSATPW 39 (41)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSST
T ss_pred HHHHHHHhhcchHHHHHHHHHHHHHHHHhCcc
Confidence 47788888888888888888776666655554
No 6
>d2yvxa3 f.57.1.1 (A:276-448) Mg2+ transporter MgtE {Thermus thermophilus [TaxId: 274]}
Probab=3.62 E-value=7.6e+02 Score=18.00 Aligned_cols=31 Identities=16% Similarity=0.123 Sum_probs=20.8
Q ss_pred HhCCCccchHHHHHHHHHHHHHHHHHHHHHH
Q 010345 107 SYGAKQYHMLGIHMQRGMFVLLLISVPLALI 137 (512)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 137 (512)
+.|+-++++..+...+-+...+..+..+.++
T Consensus 68 a~g~i~~~~~~~~l~kE~~vgll~G~~l~~i 98 (173)
T d2yvxa3 68 ATRDLDLRDWRRVFLKEMGVGLLLGLTLSFL 98 (173)
T ss_dssp HTTCSCSSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcccccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344456677778877777777777666554
No 7
>d1ijdb_ f.3.1.1 (B:) Light-harvesting complex subunits {Rhodoblastus acidophilus [TaxId: 1074]}
Probab=2.92 E-value=4.4e+02 Score=13.95 Aligned_cols=30 Identities=7% Similarity=-0.061 Sum_probs=20.8
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010345 334 HPEAARLAVCVVLVMAVTEGILVGSVLILI 363 (512)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~ 363 (512)
+-++..+....+.++...+++..=++.+..
T Consensus 8 eaEElHk~vIdGtRvF~~iA~~AH~La~~~ 37 (40)
T d1ijdb_ 8 QAEELHKHVIDGTRVFLVIAAIAHFLAFTL 37 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHHHHHhc
Confidence 346778888888888888777665554443
No 8
>d1qled_ f.23.8.1 (D:) Bacterial aa3 type cytochrome c oxidase subunit IV {Paracoccus denitrificans [TaxId: 266]}
Probab=2.31 E-value=5.8e+02 Score=13.86 Aligned_cols=33 Identities=18% Similarity=0.081 Sum_probs=18.9
Q ss_pred hcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010345 330 LGAGHPEAARLAVCVVLVMAVTEGILVGSVLIL 362 (512)
Q Consensus 330 ~g~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~ 362 (512)
.|.-|.+.-.+.+.--+++..-.++.+.+++.+
T Consensus 5 HG~MDi~vQEkTF~gFi~~~t~~~i~~i~~lif 37 (43)
T d1qled_ 5 HGEMDIRHQQATFAGFIKGATWVSILSIAVLVF 37 (43)
T ss_dssp TTCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666666666666555554444443
No 9
>d1fs1b1 a.157.1.1 (B:86-140) Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.09 E-value=6.9e+02 Score=14.18 Aligned_cols=26 Identities=12% Similarity=0.023 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHhCCCccchHHHHH
Q 010345 95 GLSSALETLCGQSYGAKQYHMLGIHM 120 (512)
Q Consensus 95 gl~~~~~~~is~~~~~~~~~~~~~~~ 120 (512)
++-.-+...++.....+.++++|+.+
T Consensus 29 ~Lldl~c~~vA~~ikgKt~eeiR~~f 54 (55)
T d1fs1b1 29 GLLDVTCKTVANMIKGKTPEEIRKTF 54 (55)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHh
Confidence 34344445566666567888888764
No 10
>d1lghb_ f.3.1.1 (B:) Light-harvesting complex subunits {Rhodospirillum molischianum [TaxId: 1083]}
Probab=1.95 E-value=6.7e+02 Score=13.61 Aligned_cols=32 Identities=3% Similarity=-0.049 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 010345 336 EAARLAVCVVLVMAVTEGILVGSVLILIRNVW 367 (512)
Q Consensus 336 ~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~i 367 (512)
++..+.+..+......+++..=++.+...+++
T Consensus 12 ~EfH~~~~~g~~~F~~iAvvAHiLvw~wrPWl 43 (43)
T d1lghb_ 12 IAVHDQFKTTFSAFIILAAVAHVLVWVWKPWF 43 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Done!