Query 010347
Match_columns 512
No_of_seqs 387 out of 1658
Neff 5.7
Searched_HMMs 46136
Date Thu Mar 28 23:28:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010347.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010347hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4270 GTPase-activator prote 100.0 3E-44 6.5E-49 387.7 23.8 238 108-345 93-343 (577)
2 cd04383 RhoGAP_srGAP RhoGAP_sr 100.0 7.9E-40 1.7E-44 313.3 14.4 176 157-336 1-188 (188)
3 cd04390 RhoGAP_ARHGAP22_24_25 100.0 7.4E-39 1.6E-43 308.6 18.1 184 157-346 1-199 (199)
4 cd04389 RhoGAP_KIAA1688 RhoGAP 100.0 2.3E-38 4.9E-43 303.1 16.9 178 159-336 1-187 (187)
5 cd04407 RhoGAP_myosin_IXB RhoG 100.0 6.3E-38 1.4E-42 299.8 17.2 171 159-334 1-184 (186)
6 cd04372 RhoGAP_chimaerin RhoGA 100.0 9.1E-38 2E-42 300.2 17.8 179 159-346 1-194 (194)
7 cd04386 RhoGAP_nadrin RhoGAP_n 100.0 1.5E-37 3.3E-42 300.5 18.2 184 156-348 2-201 (203)
8 cd04394 RhoGAP-ARHGAP11A RhoGA 100.0 1.4E-37 3.1E-42 300.9 16.6 185 158-347 1-196 (202)
9 cd04375 RhoGAP_DLC1 RhoGAP_DLC 100.0 2.1E-37 4.6E-42 303.4 17.8 155 156-314 2-166 (220)
10 cd04408 RhoGAP_GMIP RhoGAP_GMI 100.0 1.7E-37 3.8E-42 299.8 16.7 154 159-316 1-176 (200)
11 cd04391 RhoGAP_ARHGAP18 RhoGAP 100.0 2.3E-37 4.9E-42 302.2 17.4 185 158-348 1-207 (216)
12 cd04384 RhoGAP_CdGAP RhoGAP_Cd 100.0 1.2E-37 2.5E-42 300.0 14.5 155 157-316 1-168 (195)
13 cd04403 RhoGAP_ARHGAP27_15_12_ 100.0 2.9E-37 6.3E-42 295.1 16.6 156 159-318 1-168 (187)
14 cd04406 RhoGAP_myosin_IXA RhoG 100.0 2.6E-37 5.7E-42 295.5 15.7 152 159-315 1-162 (186)
15 cd04404 RhoGAP-p50rhoGAP RhoGA 100.0 4.4E-37 9.5E-42 295.2 17.2 180 156-337 3-191 (195)
16 cd04402 RhoGAP_ARHGAP20 RhoGAP 100.0 7.5E-37 1.6E-41 293.4 17.8 180 158-348 1-190 (192)
17 cd04396 RhoGAP_fSAC7_BAG7 RhoG 100.0 4.6E-37 1E-41 301.9 16.6 158 158-316 1-200 (225)
18 cd04378 RhoGAP_GMIP_PARG1 RhoG 100.0 5.3E-37 1.1E-41 296.9 16.2 154 159-316 1-178 (203)
19 cd04393 RhoGAP_FAM13A1a RhoGAP 100.0 8.6E-37 1.9E-41 292.2 16.6 177 157-335 1-188 (189)
20 cd04387 RhoGAP_Bcr RhoGAP_Bcr: 100.0 8.5E-37 1.8E-41 294.3 16.6 170 159-332 1-186 (196)
21 cd04381 RhoGap_RalBP1 RhoGap_R 100.0 9.9E-37 2.1E-41 290.4 16.8 154 159-313 1-164 (182)
22 cd04409 RhoGAP_PARG1 RhoGAP_PA 100.0 1.1E-36 2.4E-41 296.6 16.7 153 159-315 1-185 (211)
23 cd04397 RhoGAP_fLRG1 RhoGAP_fL 100.0 2.6E-36 5.6E-41 294.2 17.7 185 159-349 1-210 (213)
24 cd04373 RhoGAP_p190 RhoGAP_p19 100.0 1.7E-36 3.7E-41 289.6 16.0 170 159-337 1-182 (185)
25 cd04379 RhoGAP_SYD1 RhoGAP_SYD 100.0 3E-36 6.5E-41 292.8 17.1 155 159-315 1-171 (207)
26 cd04395 RhoGAP_ARHGAP21 RhoGAP 100.0 5.1E-36 1.1E-40 288.4 17.3 181 158-346 1-196 (196)
27 cd04377 RhoGAP_myosin_IX RhoGA 100.0 7.4E-36 1.6E-40 285.2 17.7 171 159-334 1-184 (186)
28 cd04398 RhoGAP_fRGD1 RhoGAP_fR 100.0 1E-35 2.2E-40 284.8 16.8 177 159-346 1-192 (192)
29 cd04400 RhoGAP_fBEM3 RhoGAP_fB 100.0 5.5E-36 1.2E-40 286.8 14.7 157 158-314 1-173 (190)
30 KOG2200 Tumour suppressor prot 100.0 8E-36 1.7E-40 316.3 17.2 260 45-313 182-463 (674)
31 cd04376 RhoGAP_ARHGAP6 RhoGAP_ 100.0 2.8E-35 6.1E-40 285.8 17.6 172 173-350 5-204 (206)
32 cd04385 RhoGAP_ARAP RhoGAP_ARA 100.0 8.5E-35 1.8E-39 277.5 16.5 171 160-337 2-184 (184)
33 cd04382 RhoGAP_MgcRacGAP RhoGA 100.0 1.8E-34 4E-39 277.5 16.9 161 172-334 12-186 (193)
34 cd04392 RhoGAP_ARHGAP19 RhoGAP 100.0 1.8E-34 4E-39 280.5 16.8 174 159-349 1-199 (208)
35 cd04388 RhoGAP_p85 RhoGAP_p85: 100.0 6.1E-34 1.3E-38 274.9 15.7 166 174-343 12-190 (200)
36 cd04399 RhoGAP_fRGD2 RhoGAP_fR 100.0 5.8E-34 1.3E-38 277.7 14.8 181 159-348 1-210 (212)
37 cd04380 RhoGAP_OCRL1 RhoGAP_OC 100.0 2.6E-33 5.6E-38 274.4 17.0 183 155-339 9-218 (220)
38 cd04374 RhoGAP_Graf RhoGAP_Gra 100.0 4.6E-33 1E-37 269.8 15.5 158 177-335 28-202 (203)
39 smart00324 RhoGAP GTPase-activ 100.0 7.6E-31 1.6E-35 245.7 16.7 160 176-336 2-173 (174)
40 KOG4269 Rac GTPase-activating 100.0 6.5E-31 1.4E-35 287.7 11.6 196 117-316 862-1071(1112)
41 cd00159 RhoGAP RhoGAP: GTPase- 100.0 1.3E-29 2.9E-34 234.2 16.1 157 178-335 1-168 (169)
42 KOG4407 Predicted Rho GTPase-a 100.0 1.2E-29 2.7E-34 283.7 17.2 257 83-348 1077-1356(1973)
43 PF00620 RhoGAP: RhoGAP domain 99.9 3.9E-28 8.4E-33 221.7 7.8 138 178-316 1-149 (151)
44 KOG1450 Predicted Rho GTPase-a 99.9 3.3E-27 7.1E-32 256.7 14.9 159 154-316 452-622 (650)
45 KOG4406 CDC42 Rho GTPase-activ 99.9 3.1E-27 6.7E-32 243.7 13.2 188 154-348 249-447 (467)
46 KOG1451 Oligophrenin-1 and rel 99.9 1.9E-24 4E-29 229.3 18.9 172 179-355 390-576 (812)
47 KOG1453 Chimaerin and related 99.9 1E-24 2.2E-29 250.9 15.2 193 158-354 602-810 (918)
48 KOG2710 Rho GTPase-activating 99.9 6.2E-25 1.3E-29 230.2 11.5 167 175-347 92-292 (412)
49 KOG1117 Rho- and Arf-GTPase ac 99.9 2.9E-23 6.3E-28 227.1 11.7 162 174-347 724-897 (1186)
50 KOG3564 GTPase-activating prot 99.9 1.1E-22 2.3E-27 212.3 13.8 166 175-342 360-542 (604)
51 KOG4724 Predicted Rho GTPase-a 99.8 2.3E-20 4.9E-25 201.2 6.0 173 154-334 78-259 (741)
52 KOG1452 Predicted Rho GTPase-a 99.7 3.8E-18 8.2E-23 171.3 10.4 155 155-313 181-351 (442)
53 KOG4271 Rho-GTPase activating 99.7 1E-16 2.2E-21 177.9 8.9 153 154-311 913-1076(1100)
54 cd04401 RhoGAP_fMSB1 RhoGAP_fM 99.6 1.9E-14 4.1E-19 139.1 15.0 137 179-316 8-167 (198)
55 cd04405 RhoGAP_BRCC3-like RhoG 99.5 9.8E-14 2.1E-18 136.1 12.2 175 157-349 20-231 (235)
56 KOG4370 Ral-GTPase effector RL 99.1 1.1E-10 2.4E-15 121.6 7.5 137 173-310 67-253 (514)
57 KOG3565 Cdc42-interacting prot 99.0 1.5E-10 3.2E-15 129.0 5.5 138 174-313 215-365 (640)
58 PF08101 DUF1708: Domain of un 98.1 4.2E-05 9.1E-10 82.1 13.2 138 177-315 8-168 (420)
59 KOG4724 Predicted Rho GTPase-a 97.8 1.3E-05 2.8E-10 88.3 2.9 156 155-315 413-590 (741)
60 KOG1453 Chimaerin and related 96.3 0.0037 8E-08 73.6 4.3 186 158-348 462-700 (918)
61 KOG4271 Rho-GTPase activating 94.2 0.2 4.3E-06 58.2 9.1 153 155-312 353-536 (1100)
62 KOG1449 Predicted Rho GTPase-a 91.5 0.079 1.7E-06 58.6 1.2 64 282-349 1-73 (670)
63 KOG1449 Predicted Rho GTPase-a 85.1 0.1 2.2E-06 57.7 -3.2 177 155-348 206-388 (670)
64 smart00285 PBD P21-Rho-binding 68.1 1.4 3.1E-05 31.4 -0.3 29 116-144 1-30 (36)
65 cd00132 CRIB PAK (p21 activate 61.1 4.6 0.0001 29.8 1.2 20 114-133 1-20 (42)
66 cd01093 CRIB_PAK_like PAK (p21 48.1 5.9 0.00013 29.8 -0.0 30 115-144 2-32 (46)
67 smart00139 MyTH4 Domain in Myo 47.2 11 0.00023 35.0 1.6 21 81-101 80-100 (144)
68 PF00786 PBD: P21-Rho-binding 39.9 6.6 0.00014 30.9 -0.9 31 115-145 1-32 (59)
69 PF00784 MyTH4: MyTH4 domain; 35.5 9.5 0.00021 33.6 -0.7 58 80-137 37-96 (114)
70 KOG4270 GTPase-activator prote 23.0 41 0.00089 38.2 1.3 67 179-250 60-130 (577)
No 1
>KOG4270 consensus GTPase-activator protein [Signal transduction mechanisms]
Probab=100.00 E-value=3e-44 Score=387.68 Aligned_cols=238 Identities=58% Similarity=0.892 Sum_probs=222.7
Q ss_pred CcccccccccCCccccccccchhhhhhc---ccCCCcccCCCCCCCCCCCCCcccccChhhhhhhcCCCCCCCCHHHHHH
Q 010347 108 TRELCAMEISWPTNVRHVAHVTFDRFNG---FLGLPVEFEPEVPRRAPSASATVFGVSTESMQLSFDSRGNSVPTILLLM 184 (512)
Q Consensus 108 ~~~~~~~~~g~~~~v~~la~v~~~rl~~---~~glp~~~~p~~~~~~p~~~~~vFGv~Le~l~~~~~~~g~~VP~il~~~ 184 (512)
....++|+++|+++++|.++++|+++.+ ++|.+.+++++++++.+.+...+|||+++.+++.++.+++.||.++..+
T Consensus 93 e~e~~~~kie~~~d~~~~~~~~f~~~~~~~~f~~~~~e~q~~~~rrals~~~~vfgv~~~s~Q~s~~~~~n~vp~i~~l~ 172 (577)
T KOG4270|consen 93 EEEECGMKIEQPTDQRHADHVTFDRKEGEYLFLGLPVEFQPDYHRRALSASETVFGVSTEAMQLSYDPRGNFVPLILHLL 172 (577)
T ss_pred hHHhhcCccccCcchhhhhhhhhhhhcchhhhccchhhhccccccccccchhhhhcchHHhhhcccccCCCcchhhhHhh
Confidence 4567899999999999999999999999 9999999999999999999999999999999999999998899999999
Q ss_pred HH-HHHhcCCCCcCCceecCCCchhHHHHHHHHhcCCCCCC--CChhhhHHHHHHHHHhCCCCCCCCCCHHHHHhh---c
Q 010347 185 QR-HLYGQGGLQAEGIFRINGENSQEEYVRDQLNRGVIPDG--IDIHCLAGLIKAWFRELPAGVLDPLSPEQVMQC---Q 258 (512)
Q Consensus 185 i~-~L~e~~Gl~~EGIFRvsG~~~~v~~Lr~~ln~g~~~~~--~Dvh~vAsLLK~fLReLPePLL~~~l~e~~~~~---~ 258 (512)
.. +||.++|++.|||||++|...+++.||++||.|.++.. .|+|++|++||.||||||+||+++.+|++|++. +
T Consensus 173 ~~~~l~~e~Gl~eEGlFRi~~~~sk~e~lr~~ld~g~v~~~~~iDvH~~agllKayLRELPepvl~~nL~~e~~qv~~~~ 252 (577)
T KOG4270|consen 173 QSGRLLLEGGLKEEGLFRINGEASKVERLREALDCGVVPDQLYIDVHCLAGLLKAYLRELPEPVLTFNLYKEWTQVQNCE 252 (577)
T ss_pred hhhhhhhhcCccccceeccCCCchHHHHHHHHHcCCcccccccCCHHHHHHHHHHHHHhCCCcCCCcccCHHHHHHHhcc
Confidence 99 99999999999999999999999999999999987766 999999999999999999999999999998764 3
Q ss_pred cHHH----HHHHHHhCChhhHHHHHHHHHHHHHhhhccccCCCChhhhHHhhhcccccCCChhHHHHHHHHHHHHHHHHH
Q 010347 259 TEED----CLQLVRLLPPTESALLDWAINLMADVVQQENLNKMNARNVAMVFAPNMTQMADPLTALMYAVQVMNFLKMLI 334 (512)
Q Consensus 259 ~~e~----~~~Ll~~LP~~Nr~lL~~Li~fL~~V~~~s~~NKMta~NLAiVFaPnLlr~~d~~~~l~~~~~v~~~l~~LI 334 (512)
..++ ++.++.+||+.|+.+|.|+|.||++|++++++|||+++||||||||||+|+.++.++++++++++++++.+|
T Consensus 253 ~e~~~~q~lr~~~~~LPp~n~slL~yli~flA~v~~~~~vNKMs~~NlAiV~gPNl~~~~~p~~~l~~avqvs~~~~~li 332 (577)
T KOG4270|consen 253 NEDEKVQLLRQCLQKLPPTNYSLLRYLIRFLADVVEKEHVNKMSARNLAIVFGPNLLWMKDPLTALMYAVQVSNFLKGLI 332 (577)
T ss_pred CHHHHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHHHhhhcccchhhceeEecCCccccCChHHHHHHHHHHHHHHHHHH
Confidence 3333 456667999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhccccc
Q 010347 335 LRTLREREDSV 345 (512)
Q Consensus 335 ~~~L~e~~~~i 345 (512)
+.+|.+++..+
T Consensus 333 e~~l~~~~~~~ 343 (577)
T KOG4270|consen 333 EKTLEERDTSF 343 (577)
T ss_pred HHHHHhhhccC
Confidence 99987776653
No 2
>cd04383 RhoGAP_srGAP RhoGAP_srGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in srGAPs. srGAPs are components of the intracellular part of Slit-Robo signalling pathway that is important for axon guidance and cell migration. srGAPs contain an N-terminal FCH domain, a central RhoGAP domain and a C-terminal SH3 domain; this SH3 domain interacts with the intracellular proline-rich-tail of the Roundabout receptor (Robo). This interaction with Robo then activates the rhoGAP domain which in turn inhibits Cdc42 activity. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific group
Probab=100.00 E-value=7.9e-40 Score=313.33 Aligned_cols=176 Identities=23% Similarity=0.443 Sum_probs=160.4
Q ss_pred cccccChhhhhhhcCCCCCCCCHHHHHHHHHHHhcCCCCcCCceecCCCchhHHHHHHHHhcCCCC-----CCCChhhhH
Q 010347 157 TVFGVSTESMQLSFDSRGNSVPTILLLMQRHLYGQGGLQAEGIFRINGENSQEEYVRDQLNRGVIP-----DGIDIHCLA 231 (512)
Q Consensus 157 ~vFGv~Le~l~~~~~~~g~~VP~il~~~i~~L~e~~Gl~~EGIFRvsG~~~~v~~Lr~~ln~g~~~-----~~~Dvh~vA 231 (512)
.+||++|++++. ..+..||.+|.+|++|| +.+|+++|||||++|+..+++.+++.||+|..+ +..|+|++|
T Consensus 1 k~FG~~L~~~~~---~~~~~IP~~v~~~i~~l-~~~gl~~EGIFRv~G~~~~i~~l~~~~d~g~~~~~~~~~~~d~~~va 76 (188)
T cd04383 1 KLFNGSLEEYIQ---DSGQAIPLVVESCIRFI-NLYGLQHQGIFRVSGSQVEVNDIKNAFERGEDPLADDQNDHDINSVA 76 (188)
T ss_pred CcCCccHHHHHH---HCCCCCChHHHHHHHHH-HHcCCCCCCeeecCCCHHHHHHHHHHHhcCCCccccccccccHHHHH
Confidence 489999999864 35668999999999999 678999999999999999999999999998632 468999999
Q ss_pred HHHHHHHHhCCCCCCCCCCHHHHHhhcc-------HHHHHHHHHhCChhhHHHHHHHHHHHHHhhhccccCCCChhhhHH
Q 010347 232 GLIKAWFRELPAGVLDPLSPEQVMQCQT-------EEDCLQLVRLLPPTESALLDWAINLMADVVQQENLNKMNARNVAM 304 (512)
Q Consensus 232 sLLK~fLReLPePLL~~~l~e~~~~~~~-------~e~~~~Ll~~LP~~Nr~lL~~Li~fL~~V~~~s~~NKMta~NLAi 304 (512)
++||.|||+||+||||.++|+.|+++.+ ...++.++.+||+.|+.+|+||+.||++|+++++.||||++|||+
T Consensus 77 ~lLK~fLReLPepLip~~~~~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAi 156 (188)
T cd04383 77 GVLKLYFRGLENPLFPKERFEDLMSCVKLENPTERVHQIREILSTLPRSVIIVMRYLFAFLNHLSQFSDENMMDPYNLAI 156 (188)
T ss_pred HHHHHHHHhCCCccCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHhhCCCccccee
Confidence 9999999999999999999999987642 345788999999999999999999999999999999999999999
Q ss_pred hhhcccccCCChhHHHHHHHHHHHHHHHHHHH
Q 010347 305 VFAPNMTQMADPLTALMYAVQVMNFLKMLILR 336 (512)
Q Consensus 305 VFaPnLlr~~d~~~~l~~~~~v~~~l~~LI~~ 336 (512)
||||+|++.+++...+.++.++++++++||+|
T Consensus 157 vf~P~L~~~p~~~~~~~~~~~~~~~~~~li~~ 188 (188)
T cd04383 157 CFGPTLMPVPEGQDQVSCQAHVNELIKTIIIH 188 (188)
T ss_pred eeeccccCCCCCccHHHHHHHHHHHHHHHhcC
Confidence 99999999988888889999999999999864
No 3
>cd04390 RhoGAP_ARHGAP22_24_25 RhoGAP_ARHGAP22_24_25: GTPase-activator protein (GAP) domain for Rho-like GTPases found in ARHGAP22, 24 and 25-like proteins; longer isoforms of these proteins contain an additional N-terminal pleckstrin homology (PH) domain. ARHGAP25 (KIA0053) has been identified as a GAP for Rac1 and Cdc42. Short isoforms (without the PH domain) of ARHGAP24, called RC-GAP72 and p73RhoGAP, and of ARHGAP22, called p68RacGAP, has been shown to be involved in angiogenesis and endothelial cell capillary formation. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the r
Probab=100.00 E-value=7.4e-39 Score=308.60 Aligned_cols=184 Identities=26% Similarity=0.470 Sum_probs=156.0
Q ss_pred cccccChhhhhhhcCCCC-CCCCHHHHHHHHHHHhcCCCCcCCceecCCCchhHHHHHHHHhcCCC---CCCCChhhhHH
Q 010347 157 TVFGVSTESMQLSFDSRG-NSVPTILLLMQRHLYGQGGLQAEGIFRINGENSQEEYVRDQLNRGVI---PDGIDIHCLAG 232 (512)
Q Consensus 157 ~vFGv~Le~l~~~~~~~g-~~VP~il~~~i~~L~e~~Gl~~EGIFRvsG~~~~v~~Lr~~ln~g~~---~~~~Dvh~vAs 232 (512)
+|||++|++++....+.| ..||.+|.+|++|| +.+|+++|||||++|+..+++++++.+|.|.. ....|+|++|+
T Consensus 1 ~iFG~~L~~~~~~~~~~~~~~iP~~i~~~i~~l-~~~gl~~eGIFR~~G~~~~i~~l~~~~d~~~~~~~~~~~d~h~va~ 79 (199)
T cd04390 1 GVFGQRLEDTVAYERKFGPRLVPILVEQCVDFI-REHGLKEEGLFRLPGQANLVKQLQDAFDAGERPSFDSDTDVHTVAS 79 (199)
T ss_pred CcCCccHHHHHHHhcccCCCCCChHHHHHHHHH-HHcCCCCCCeeeCCCCHHHHHHHHHHHhCCCCCCccccCCHHHHHH
Confidence 489999999865443333 46999999999998 67899999999999999999999999999863 24689999999
Q ss_pred HHHHHHHhCCCCCCCCCCHHHHHhhcc---------HHHHHHHHHhCChhhHHHHHHHHHHHHHhhhccccCCCChhhhH
Q 010347 233 LIKAWFRELPAGVLDPLSPEQVMQCQT---------EEDCLQLVRLLPPTESALLDWAINLMADVVQQENLNKMNARNVA 303 (512)
Q Consensus 233 LLK~fLReLPePLL~~~l~e~~~~~~~---------~e~~~~Ll~~LP~~Nr~lL~~Li~fL~~V~~~s~~NKMta~NLA 303 (512)
+||.|||+||+||+|.++|+.|+.+.+ ...++.++..||+.|+.+|.||+.||++|+++++.||||+.|||
T Consensus 80 lLK~fLReLPePLi~~~~y~~~~~~~~~~~~~~~~~~~~l~~~l~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLA 159 (199)
T cd04390 80 LLKLYLRELPEPVIPWAQYEDFLSCAQLLSKDEEKGLGELMKQVSILPKVNYNLLSYICRFLDEVQSNSSVNKMSVQNLA 159 (199)
T ss_pred HHHHHHHhCCCccCCHHHHHHHHHHHhccCccHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhCcccCCCHHHHH
Confidence 999999999999999999999986532 23567889999999999999999999999999999999999999
Q ss_pred HhhhcccccCC--ChhHHHHHHHHHHHHHHHHHHHHHhhcccccc
Q 010347 304 MVFAPNMTQMA--DPLTALMYAVQVMNFLKMLILRTLREREDSVV 346 (512)
Q Consensus 304 iVFaPnLlr~~--d~~~~l~~~~~v~~~l~~LI~~~L~e~~~~if 346 (512)
+||||+|+|+. ++...+.....++.+++.||. +++.||
T Consensus 160 ivf~P~llr~~~~~~~~~~~~~~~~~~~~~~lI~-----~~~~~F 199 (199)
T cd04390 160 TVFGPNILRPKVEDPATIMEGTPQIQQLMTVMIS-----KHEPLF 199 (199)
T ss_pred HHhccccCCCCCCCHHHHHhccHHHHHHHHHHHH-----hhhhcC
Confidence 99999999984 445555556666666665554 446655
No 4
>cd04389 RhoGAP_KIAA1688 RhoGAP_KIAA1688: GTPase-activator protein (GAP) domain for Rho-like GTPases found in KIAA1688-like proteins; KIAA1688 is a protein of unknown function that contains a RhoGAP domain and a myosin tail homology 4 (MyTH4) domain. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=2.3e-38 Score=303.10 Aligned_cols=178 Identities=29% Similarity=0.470 Sum_probs=159.6
Q ss_pred cccChhhhhhhcCCC--CCCCCHHHHHHHHHHHhcCCCCcCCceecCCCchhHHHHHHHHhcCCCC--CCCChhhhHHHH
Q 010347 159 FGVSTESMQLSFDSR--GNSVPTILLLMQRHLYGQGGLQAEGIFRINGENSQEEYVRDQLNRGVIP--DGIDIHCLAGLI 234 (512)
Q Consensus 159 FGv~Le~l~~~~~~~--g~~VP~il~~~i~~L~e~~Gl~~EGIFRvsG~~~~v~~Lr~~ln~g~~~--~~~Dvh~vAsLL 234 (512)
||++|++++.+.... +..||.+|..|++||++.+|+++|||||++|+..+++++++.+|.|.+. ...|+|++|++|
T Consensus 1 FG~~L~~~~~r~~~~~~~~~iP~il~~~i~~l~~~~gl~~EGIFR~~G~~~~i~~l~~~~d~~~~~~~~~~d~h~va~lL 80 (187)
T cd04389 1 FGSSLEEIMDRQKEKYPELKLPWILTFLSEKVLALGGFQTEGIFRVPGDIDEVNELKLRVDQWDYPLSGLEDPHVPASLL 80 (187)
T ss_pred CCCCHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCCcCCCeeeCCCCHHHHHHHHHHHhcCCCCccccCCHHHHHHHH
Confidence 999999986554322 4689999999999998889999999999999999999999999999764 457999999999
Q ss_pred HHHHHhCCCCCCCCCCHHHHHhh-ccHHHHHHHHHhCChhhHHHHHHHHHHHHHhhhcc--ccCCCChhhhHHhhhcccc
Q 010347 235 KAWFRELPAGVLDPLSPEQVMQC-QTEEDCLQLVRLLPPTESALLDWAINLMADVVQQE--NLNKMNARNVAMVFAPNMT 311 (512)
Q Consensus 235 K~fLReLPePLL~~~l~e~~~~~-~~~e~~~~Ll~~LP~~Nr~lL~~Li~fL~~V~~~s--~~NKMta~NLAiVFaPnLl 311 (512)
|.|||+||+||+|.++|+.+++. .+.+.+++++.+||+.|+.+|.||+.||++|++++ +.|||+++|||+||||+|+
T Consensus 81 K~fLReLpePli~~~~~~~~i~~~~~~~~~~~li~~LP~~n~~~L~~l~~~L~~v~~~~~~~~NkM~~~NLAivf~P~l~ 160 (187)
T cd04389 81 KLWLRELEEPLIPDALYQQCISASEDPDKAVEIVQKLPIINRLVLCYLINFLQVFAQPENVAHTKMDVSNLAMVFAPNIL 160 (187)
T ss_pred HHHHHhCCCCCCCHHHHHHHHHhhcCHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHccccC
Confidence 99999999999999999999985 46778899999999999999999999999999755 6899999999999999999
Q ss_pred cC--CChhHHHHHHHHHHHHHHHHHHH
Q 010347 312 QM--ADPLTALMYAVQVMNFLKMLILR 336 (512)
Q Consensus 312 r~--~d~~~~l~~~~~v~~~l~~LI~~ 336 (512)
+. .++...+....+.+.+++.||+|
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~lI~~ 187 (187)
T cd04389 161 RCTSDDPRVIFENTRKEMSFLRTLIEH 187 (187)
T ss_pred CCCCCCHHHHHHccHHHHHHHHHHhcC
Confidence 97 45666778888999999999864
No 5
>cd04407 RhoGAP_myosin_IXB RhoGAP_myosin_IXB: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in myosins IXB. Class IX myosins contain a characteristic head domain, a neck domain and a tail domain which contains a C6H2-zinc binding motif and a Rho-GAP domain. Class IX myosins are single-headed, processive myosins that are partly cytoplasmic, and partly associated with membranes and the actin cytoskeleton. Class IX myosins are implicated in the regulation of neuronal morphogenesis and function of sensory systems, like the inner ear. There are two major isoforms, myosin IXA and IXB with several splice variants, which are both expressed in developing neurons Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell prolifer
Probab=100.00 E-value=6.3e-38 Score=299.81 Aligned_cols=171 Identities=27% Similarity=0.488 Sum_probs=147.8
Q ss_pred cccChhhhhhhcCCCCCCCCHHHHHHHHHHHhcCCCCcCCceecCCCchhHHHHHHHHhcCC---CCCCCChhhhHHHHH
Q 010347 159 FGVSTESMQLSFDSRGNSVPTILLLMQRHLYGQGGLQAEGIFRINGENSQEEYVRDQLNRGV---IPDGIDIHCLAGLIK 235 (512)
Q Consensus 159 FGv~Le~l~~~~~~~g~~VP~il~~~i~~L~e~~Gl~~EGIFRvsG~~~~v~~Lr~~ln~g~---~~~~~Dvh~vAsLLK 235 (512)
|||+|+.++. .+..||.+|.+|++|| +++|+.+|||||++|+..+++.|++.+|.|. .....|+|++|++||
T Consensus 1 FGv~L~~~~~----~~~~vP~il~~~i~~l-~~~gl~~EGIfR~~Gs~~~i~~l~~~~~~~~~~~~~~~~d~h~va~lLK 75 (186)
T cd04407 1 FGVRVGSLTS----NKTSVPIVLEKLLEHV-EMHGLYTEGIYRKSGSANRMKELHQLLQADPENVKLENYPIHAITGLLK 75 (186)
T ss_pred CCCcHHHHHh----CCCCCCcHHHHHHHHH-HHcCCCCCceeecCCCHHHHHHHHHHHhcCCcccCcccCCHHHHHHHHH
Confidence 9999999862 4558999999999998 7899999999999999999999999999874 235689999999999
Q ss_pred HHHHhCCCCCCCCCCHHHHHhhc-------cHHHHHHHHHhCChhhHHHHHHHHHHHHHhhhccccCCCChhhhHHhhhc
Q 010347 236 AWFRELPAGVLDPLSPEQVMQCQ-------TEEDCLQLVRLLPPTESALLDWAINLMADVVQQENLNKMNARNVAMVFAP 308 (512)
Q Consensus 236 ~fLReLPePLL~~~l~e~~~~~~-------~~e~~~~Ll~~LP~~Nr~lL~~Li~fL~~V~~~s~~NKMta~NLAiVFaP 308 (512)
.|||+||+|||++++|+.|+.+. +...++.++..||+.|+.+|+||+.||++|+++++.|||++.|||+||||
T Consensus 76 ~flReLPepLi~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~l~~~L~~V~~~s~~NkM~~~NLAivfaP 155 (186)
T cd04407 76 QWLRELPEPLMTFAQYNDFLRAVELPEKQEQLQAIYRVLEQLPTANHNTLERLIFHLVKVALEEDVNRMSPNALAIVFAP 155 (186)
T ss_pred HHHHhCCCccCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhccccCCCChhHHHHhhhc
Confidence 99999999999999999998653 24567889999999999999999999999999999999999999999999
Q ss_pred ccccCCC---hhHHHHHHHHHHHHHHHHH
Q 010347 309 NMTQMAD---PLTALMYAVQVMNFLKMLI 334 (512)
Q Consensus 309 nLlr~~d---~~~~l~~~~~v~~~l~~LI 334 (512)
+|+|.++ +...+....+...+++.||
T Consensus 156 ~Ll~~~~~~d~~~~~~~~~~~~~~v~~li 184 (186)
T cd04407 156 CLLRCPDSSDPLTSMKDVAKTTTCVEMLI 184 (186)
T ss_pred cccCCCCCCCHHHHHHhhhhhHHHHHHHh
Confidence 9999743 4444554455555555444
No 6
>cd04372 RhoGAP_chimaerin RhoGAP_chimaerin: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of chimaerins. Chimaerins are a family of phorbolester- and diacylglycerol-responsive GAPs specific for the Rho-like GTPase Rac. Chimaerins exist in two alternative splice forms that each contain a C-terminal GAP domain, and a central C1 domain which binds phorbol esters, inducing a conformational change that activates the protein; one splice form is lacking the N-terminal Src homology-2 (SH2) domain. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GT
Probab=100.00 E-value=9.1e-38 Score=300.16 Aligned_cols=179 Identities=25% Similarity=0.389 Sum_probs=148.8
Q ss_pred cccChhhhhhhcCCCCCCCCHHHHHHHHHHHhcCCCCcCCceecCCCchhHHHHHHHHhcC-CC--C---CCCChhhhHH
Q 010347 159 FGVSTESMQLSFDSRGNSVPTILLLMQRHLYGQGGLQAEGIFRINGENSQEEYVRDQLNRG-VI--P---DGIDIHCLAG 232 (512)
Q Consensus 159 FGv~Le~l~~~~~~~g~~VP~il~~~i~~L~e~~Gl~~EGIFRvsG~~~~v~~Lr~~ln~g-~~--~---~~~Dvh~vAs 232 (512)
||++|+.++. +.+..||.+|.+|++|| +.+|+.+|||||++|+..+|+++++.+|++ .. . ...|+|+||+
T Consensus 1 FG~~L~~~~~---~~~~~iP~iv~~ci~~l-~~~gl~~EGIFR~sG~~~~i~~l~~~~d~~~~~~~~~~~~~~d~h~va~ 76 (194)
T cd04372 1 YGCDLTTLVK---AHNTQRPMVVDMCIREI-EARGLQSEGLYRVSGFAEEIEDVKMAFDRDGEKADISATVYPDINVITG 76 (194)
T ss_pred CCCChHHHHH---HcCCCCChHHHHHHHHH-HHcCCCcCceeecCCcHHHHHHHHHHHcCCCCccCCcccccccHHHHHH
Confidence 9999999864 34558999999999998 679999999999999999999999999974 21 1 2358999999
Q ss_pred HHHHHHHhCCCCCCCCCCHHHHHhhc-------cHHHHHHHHHhCChhhHHHHHHHHHHHHHhhhccccCCCChhhhHHh
Q 010347 233 LIKAWFRELPAGVLDPLSPEQVMQCQ-------TEEDCLQLVRLLPPTESALLDWAINLMADVVQQENLNKMNARNVAMV 305 (512)
Q Consensus 233 LLK~fLReLPePLL~~~l~e~~~~~~-------~~e~~~~Ll~~LP~~Nr~lL~~Li~fL~~V~~~s~~NKMta~NLAiV 305 (512)
+||.|||+||+||||.++|+.|+++. +.+.++.++.+||+.|+.+|+||+.||++|+++++.|||++.|||+|
T Consensus 77 lLK~flReLP~pLi~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~LP~~n~~~L~~L~~~L~~v~~~s~~NkM~~~NLaiv 156 (194)
T cd04372 77 ALKLYFRDLPIPVITYDTYPKFIDAAKISNPDERLEAVHEALMLLPPAHYETLRYLMEHLKRVTLHEKDNKMNAENLGIV 156 (194)
T ss_pred HHHHHHHhCCCccCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhccccCCCCHHHHHHH
Confidence 99999999999999999999998753 23457889999999999999999999999999999999999999999
Q ss_pred hhcccccCCChh-H-HHHHHHHHHHHHHHHHHHHHhhcccccc
Q 010347 306 FAPNMTQMADPL-T-ALMYAVQVMNFLKMLILRTLREREDSVV 346 (512)
Q Consensus 306 FaPnLlr~~d~~-~-~l~~~~~v~~~l~~LI~~~L~e~~~~if 346 (512)
|||+|+++++.. . .+........ |..+|+++++.||
T Consensus 157 f~P~Ll~~~~~~~~~~~~~~~~~~~-----iv~~LI~~~~~iF 194 (194)
T cd04372 157 FGPTLMRPPEDSALTTLNDMRYQIL-----IVQLLITNEDVLF 194 (194)
T ss_pred HhcccCCCCCccHHHHHHhHHHHHH-----HHHHHHHhhHhhC
Confidence 999999986532 1 2222222233 3455556667766
No 7
>cd04386 RhoGAP_nadrin RhoGAP_nadrin: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of Nadrin-like proteins. Nadrin, also named Rich-1, has been shown to be involved in the regulation of Ca2+-dependent exocytosis in neurons and recently has been implicated in tight junction maintenance in mammalian epithelium. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=1.5e-37 Score=300.49 Aligned_cols=184 Identities=23% Similarity=0.356 Sum_probs=154.8
Q ss_pred CcccccChhhhhhhcCCCCCCCCHHHHHHHHHHHhcCCCCcCCceecCCCchhHHHHHHHHhcCCCC-----CCCChhhh
Q 010347 156 ATVFGVSTESMQLSFDSRGNSVPTILLLMQRHLYGQGGLQAEGIFRINGENSQEEYVRDQLNRGVIP-----DGIDIHCL 230 (512)
Q Consensus 156 ~~vFGv~Le~l~~~~~~~g~~VP~il~~~i~~L~e~~Gl~~EGIFRvsG~~~~v~~Lr~~ln~g~~~-----~~~Dvh~v 230 (512)
+++||++|++++. ..+..||.+|.+|+.|| +.+|+.+|||||++|+..+++.+++.+|.|.+. ...|+|++
T Consensus 2 ~~~FG~~L~~~~~---~~~~~iP~~v~~~i~~L-~~~gl~~eGIFR~~g~~~~i~~l~~~~d~g~~~~~~~~~~~d~h~v 77 (203)
T cd04386 2 KPVFGTPLEEHLK---RTGREIALPIEACVMCL-LETGMNEEGLFRVGGGASKLKRLKAALDAGTFSLPLDEFYSDPHAV 77 (203)
T ss_pred CCcCCCCHHHHHH---HcCCCCCHHHHHHHHHH-HHcCCCCCCeeeCCCcHHHHHHHHHHHhCCCCCcchhhccCCHHHH
Confidence 5799999998853 23557999999999998 568999999999999999999999999999742 34799999
Q ss_pred HHHHHHHHHhCCCCCCCCCCHHHHHhhc-------cHHHHHHHHHhCChhhHHHHHHHHHHHHHhhhccccCCCChhhhH
Q 010347 231 AGLIKAWFRELPAGVLDPLSPEQVMQCQ-------TEEDCLQLVRLLPPTESALLDWAINLMADVVQQENLNKMNARNVA 303 (512)
Q Consensus 231 AsLLK~fLReLPePLL~~~l~e~~~~~~-------~~e~~~~Ll~~LP~~Nr~lL~~Li~fL~~V~~~s~~NKMta~NLA 303 (512)
|++||.|||+||+||++.++|+.|+++. +.+.++.++.+||..|+.+|+||+.||++|+++++.|||+++|||
T Consensus 78 a~~lK~fLreLp~pli~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~l~~~l~~v~~~~~~NkM~~~nLa 157 (203)
T cd04386 78 ASALKSYLRELPDPLLTYNLYEDWVQAANKPDEDERLQAIWRILNKLPRENRDNLRYLIKFLSKLAQKSDENKMSPSNIA 157 (203)
T ss_pred HHHHHHHHHhCCCccCCHHHHHHHHHHHccCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhccccCCChHHHH
Confidence 9999999999999999999999998763 345678999999999999999999999999999999999999999
Q ss_pred HhhhcccccCCChhHHHHH----HHHHHHHHHHHHHHHHhhcccccccC
Q 010347 304 MVFAPNMTQMADPLTALMY----AVQVMNFLKMLILRTLREREDSVVEH 348 (512)
Q Consensus 304 iVFaPnLlr~~d~~~~l~~----~~~v~~~l~~LI~~~L~e~~~~if~~ 348 (512)
+||||+|+|+.+.....+. ......+++. ||++++.||.+
T Consensus 158 i~faP~ll~~~~~~~~~~~~~~~~~~~~~iv~~-----LI~~~~~iF~~ 201 (203)
T cd04386 158 IVLAPNLLWAKNEGSLAEMAAGTSVHVVAIVEL-----IISHADWFFPG 201 (203)
T ss_pred HHhccccCCCCCCChhhhhhhhhhHHHHHHHHH-----HHHhHHHhCCC
Confidence 9999999998654322222 2334444444 44556888865
No 8
>cd04394 RhoGAP-ARHGAP11A RhoGAP-ARHGAP11A: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP11A-like proteins. The mouse homolog of human ArhGAP11A has been detected as a gene exclusively expressed in immature ganglion cells, potentially playing a role in retinal development. The exact function of ArhGAP11A is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=1.4e-37 Score=300.89 Aligned_cols=185 Identities=28% Similarity=0.385 Sum_probs=151.6
Q ss_pred ccccChhhhhhhcCCCCCCCCHHHHHHHHHHHhcCCCCcCCceecCCCchhHHHHHHHHhcCCC-CCCCChhhhHHHHHH
Q 010347 158 VFGVSTESMQLSFDSRGNSVPTILLLMQRHLYGQGGLQAEGIFRINGENSQEEYVRDQLNRGVI-PDGIDIHCLAGLIKA 236 (512)
Q Consensus 158 vFGv~Le~l~~~~~~~g~~VP~il~~~i~~L~e~~Gl~~EGIFRvsG~~~~v~~Lr~~ln~g~~-~~~~Dvh~vAsLLK~ 236 (512)
|||+||+.++......+..||.+|.+|++||+ . |+++|||||++|+..+++.|++.+|+|.. ....++|++|++||.
T Consensus 1 vFGv~L~~l~~~~~~~~~~IP~il~~~~~~l~-~-~l~~EGIFR~sG~~~~i~~l~~~~d~~~~~~~~~~~~~vaslLK~ 78 (202)
T cd04394 1 VFGVPLHSLPHSTVPEYGNVPKFLVDACTFLL-D-HLSTEGLFRKSGSVVRQKELKAKLEGGEACLSSALPCDVAGLLKQ 78 (202)
T ss_pred CCCccHHHHHHhhCCCCCCCChHHHHHHHHHH-H-CCCCCCeeeCCCCHHHHHHHHHHHcCCCCCccccCHHHHHHHHHH
Confidence 79999999875444446689999999999984 3 69999999999999999999999999874 346789999999999
Q ss_pred HHHhCCCCCCCCCCHHHHHhhcc-------HHHHHHHHHhCChhhHHHHHHHHHHHHHhhhccccCCCChhhhHHhhhcc
Q 010347 237 WFRELPAGVLDPLSPEQVMQCQT-------EEDCLQLVRLLPPTESALLDWAINLMADVVQQENLNKMNARNVAMVFAPN 309 (512)
Q Consensus 237 fLReLPePLL~~~l~e~~~~~~~-------~e~~~~Ll~~LP~~Nr~lL~~Li~fL~~V~~~s~~NKMta~NLAiVFaPn 309 (512)
|||+||+||+|+++|+.|+++.. .+.++.++.+||..|+.+|+||+.||++|+++++.|||++.|||+||||+
T Consensus 79 flReLPePLi~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~LP~~n~~~L~~L~~~L~~V~~~~~~NkM~~~NLAivfaP~ 158 (202)
T cd04394 79 FFRELPEPLLPYDLHEALLKAQELPTDEERKSATLLLTCLLPDEHVNTLRYFFSFLYDVAQRCSENKMDSSNLAVIFAPN 158 (202)
T ss_pred HHhcCCCcCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHhcccccCCHHHHHHhhcce
Confidence 99999999999999999987642 23456788999999999999999999999999999999999999999999
Q ss_pred cccCCChhH---HHHHHHHHHHHHHHHHHHHHhhccccccc
Q 010347 310 MTQMADPLT---ALMYAVQVMNFLKMLILRTLREREDSVVE 347 (512)
Q Consensus 310 Llr~~d~~~---~l~~~~~v~~~l~~LI~~~L~e~~~~if~ 347 (512)
|+++.+... ..+. .-+... ..|.++||+++..||.
T Consensus 159 L~~~~~~~~~~s~~~~--~~~~~~-~~vv~~lI~~~~~i~~ 196 (202)
T cd04394 159 LFQSEEGGEKMSSSTE--KRLRLQ-AAVVQTLIDNASNIGI 196 (202)
T ss_pred eecCCCcccccchhHH--HhHHHH-HHHHHHHHHHHHHHcc
Confidence 999865322 1111 111112 3444566666677764
No 9
>cd04375 RhoGAP_DLC1 RhoGAP_DLC1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of DLC1-like proteins. DLC1 shows in vitro GAP activity towards RhoA and CDC42. Beside its C-terminal GAP domain, DLC1 also contains a SAM (sterile alpha motif) and a START (StAR-related lipid transfer action) domain. DLC1 has tumor suppressor activity in cell culture. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=2.1e-37 Score=303.44 Aligned_cols=155 Identities=25% Similarity=0.388 Sum_probs=140.6
Q ss_pred CcccccChhhhhhhcCCCCCCCCHHHHHHHHHHHhcCCCCcCCceecCCCchhHHHHHHHHhcCC---CCCCCChhhhHH
Q 010347 156 ATVFGVSTESMQLSFDSRGNSVPTILLLMQRHLYGQGGLQAEGIFRINGENSQEEYVRDQLNRGV---IPDGIDIHCLAG 232 (512)
Q Consensus 156 ~~vFGv~Le~l~~~~~~~g~~VP~il~~~i~~L~e~~Gl~~EGIFRvsG~~~~v~~Lr~~ln~g~---~~~~~Dvh~vAs 232 (512)
+.|||+||+.++. +.|..||.+|..|++|| +.+|+++|||||++|+..+++.|++.+|.+. ..+..++|+||+
T Consensus 2 ~~vFGvpL~~~~~---r~g~~IP~~i~~~i~~L-~~~gl~~eGIFR~sG~~~~i~~L~~~~d~~~~~~~~~~~~~~~va~ 77 (220)
T cd04375 2 KNVFGVPLLVNLQ---RTGQPLPRSIQQAMRWL-RNNALDQVGLFRKSGVKSRIQKLRSMIESSTDNVNYDGQQAYDVAD 77 (220)
T ss_pred CCEecCcHHHHHh---hcCCCCChHHHHHHHHH-HHhCCCccceeecCCcHHHHHHHHHHHhcCCCccCcccccHHHHHH
Confidence 5799999987753 45678999999999998 6899999999999999999999999999863 235689999999
Q ss_pred HHHHHHHhCCCCCCCCCCHHHHHhhc-------cHHHHHHHHHhCChhhHHHHHHHHHHHHHhhhccccCCCChhhhHHh
Q 010347 233 LIKAWFRELPAGVLDPLSPEQVMQCQ-------TEEDCLQLVRLLPPTESALLDWAINLMADVVQQENLNKMNARNVAMV 305 (512)
Q Consensus 233 LLK~fLReLPePLL~~~l~e~~~~~~-------~~e~~~~Ll~~LP~~Nr~lL~~Li~fL~~V~~~s~~NKMta~NLAiV 305 (512)
+||.|||+||+||||+++|+.|+++. +.+.++.++.+||+.||.+|+||+.||++|+++++.|||++.|||+|
T Consensus 78 lLK~flReLPePLlt~~l~~~fi~~~~~~~~~~~~~~l~~~i~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAiv 157 (220)
T cd04375 78 MLKQYFRDLPEPLLTNKLSETFIAIFQYVPKEQRLEAVQCAILLLPDENREVLQTLLYFLSDVAANSQENQMTATNLAVC 157 (220)
T ss_pred HHHHHHHhCCCccCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHhccccCCCHHHHHHH
Confidence 99999999999999999999998742 34567889999999999999999999999999999999999999999
Q ss_pred hhcccccCC
Q 010347 306 FAPNMTQMA 314 (512)
Q Consensus 306 FaPnLlr~~ 314 (512)
|||+||+..
T Consensus 158 faP~L~~~~ 166 (220)
T cd04375 158 LAPSLFHLN 166 (220)
T ss_pred HhhhhcCCC
Confidence 999999974
No 10
>cd04408 RhoGAP_GMIP RhoGAP_GMIP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of GMIP (Gem interacting protein). GMIP plays important roles in neurite growth and axonal guidance, and interacts with Gem, a member of the RGK subfamily of the Ras small GTPase superfamily, through the N-terminal half of the protein. GMIP contains a C-terminal RhoGAP domain. GMIP inhibits RhoA function, but is inactive towards Rac1 and Cdc41. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=1.7e-37 Score=299.83 Aligned_cols=154 Identities=21% Similarity=0.331 Sum_probs=139.9
Q ss_pred cccChhhhhhhcCCCCCCCCHHHHHHHHHHHhcCCCCcCCceecCCCchhHHHHHHHHhcCCC---CCCCChhhhHHHHH
Q 010347 159 FGVSTESMQLSFDSRGNSVPTILLLMQRHLYGQGGLQAEGIFRINGENSQEEYVRDQLNRGVI---PDGIDIHCLAGLIK 235 (512)
Q Consensus 159 FGv~Le~l~~~~~~~g~~VP~il~~~i~~L~e~~Gl~~EGIFRvsG~~~~v~~Lr~~ln~g~~---~~~~Dvh~vAsLLK 235 (512)
|||+|+.+.. +.+..||.+|.+|++|| +++|+++|||||++|+..++++|++.||+|.. ....|+|+||++||
T Consensus 1 FGv~l~~l~~---~~~~~vP~iv~~ci~~i-~~~gl~~eGIfR~sG~~~~i~~l~~~~d~~~~~~~~~~~~~h~va~lLK 76 (200)
T cd04408 1 FGVDFSQLPR---DFPEEVPFVVVRCTAEI-ENRALGVQGIYRISGSKARVEKLCQAFENGRDLVDLSGHSPHDITSVLK 76 (200)
T ss_pred CCCCHHHHHH---hCCCCCChHHHHHHHHH-HHcCCCCcceeeCCCcHHHHHHHHHHHhcCCCccCcccCCHHHHHHHHH
Confidence 9999999864 44568999999999998 67999999999999999999999999999863 35689999999999
Q ss_pred HHHHhCCCCCCCCCCHHHHHhhc-------------------cHHHHHHHHHhCChhhHHHHHHHHHHHHHhhhccccCC
Q 010347 236 AWFRELPAGVLDPLSPEQVMQCQ-------------------TEEDCLQLVRLLPPTESALLDWAINLMADVVQQENLNK 296 (512)
Q Consensus 236 ~fLReLPePLL~~~l~e~~~~~~-------------------~~e~~~~Ll~~LP~~Nr~lL~~Li~fL~~V~~~s~~NK 296 (512)
.|||+||+||||+++|+.|+++. +.+.++.++..||+.||.+|+||+.||++|+++++.||
T Consensus 77 ~fLReLPePLi~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lk~li~~LP~~n~~~L~~L~~~L~~V~~~~~~Nk 156 (200)
T cd04408 77 HFLKELPEPVLPFQLYDDFIALAKELQRDSEKAAESPSIVENIIRSLKELLGRLPVSNYNTLRHLMAHLYRVAERFEDNK 156 (200)
T ss_pred HHHHhCCCccCCHHHHHHHHHHHHHhcccccccccccccHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhhccC
Confidence 99999999999999999998643 23457889999999999999999999999999999999
Q ss_pred CChhhhHHhhhcccccCCCh
Q 010347 297 MNARNVAMVFAPNMTQMADP 316 (512)
Q Consensus 297 Mta~NLAiVFaPnLlr~~d~ 316 (512)
|++.|||+||||+|+++...
T Consensus 157 M~~~NLAivf~P~Ll~~~~~ 176 (200)
T cd04408 157 MSPNNLGIVFGPTLLRPLVG 176 (200)
T ss_pred CCHhHhhhhhccccCCCCCC
Confidence 99999999999999998654
No 11
>cd04391 RhoGAP_ARHGAP18 RhoGAP_ARHGAP18: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP18-like proteins. The function of ArhGAP18 is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=2.3e-37 Score=302.16 Aligned_cols=185 Identities=28% Similarity=0.386 Sum_probs=152.7
Q ss_pred ccccChhhhhhhcCC--CCCCCCHHHHHHHHHHHhcCCCCcCCceecCCCchhHHHHHHHHhcCC-----CCCCCChhhh
Q 010347 158 VFGVSTESMQLSFDS--RGNSVPTILLLMQRHLYGQGGLQAEGIFRINGENSQEEYVRDQLNRGV-----IPDGIDIHCL 230 (512)
Q Consensus 158 vFGv~Le~l~~~~~~--~g~~VP~il~~~i~~L~e~~Gl~~EGIFRvsG~~~~v~~Lr~~ln~g~-----~~~~~Dvh~v 230 (512)
|||+||++++..... .+..||.+|.+|++|| +.+|+++|||||++|+..++++|++.+|.+. ..+..|+|++
T Consensus 1 vFGv~L~~l~~~~~~~~~~~~iP~~l~~~i~~l-~~~gl~~EGIFR~~G~~~~i~~l~~~ld~~~~~~~~~~~~~~~h~v 79 (216)
T cd04391 1 LFGVPLSTLLERDQKKVPGSKVPLIFQKLINKL-EERGLETEGILRIPGSAQRVKFLCQELEAKFYEGTFLWDQVKQHDA 79 (216)
T ss_pred CCCCCHHHHHHHhcccCCCCCCCcHHHHHHHHH-HHcCCCcCceeecCCcHHHHHHHHHHHhcccccCccccccCCHHHH
Confidence 799999998765332 3568999999999998 6799999999999999999999999999863 2356899999
Q ss_pred HHHHHHHHHhCCCCCCCCCCHHHHHhhcc-------HHHHHHHHHhCChhhHHHHHHHHHHHHHhhhccccCCCChhhhH
Q 010347 231 AGLIKAWFRELPAGVLDPLSPEQVMQCQT-------EEDCLQLVRLLPPTESALLDWAINLMADVVQQENLNKMNARNVA 303 (512)
Q Consensus 231 AsLLK~fLReLPePLL~~~l~e~~~~~~~-------~e~~~~Ll~~LP~~Nr~lL~~Li~fL~~V~~~s~~NKMta~NLA 303 (512)
|++||.|||+||+||||.++|+.|+++.. .+.++.++.+||+.|+.+|+||+.||++|+++++.||||+.|||
T Consensus 80 a~lLK~flReLPePLi~~~~~~~~~~~~~~~~~~~~~~~l~~li~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLA 159 (216)
T cd04391 80 ASLLKLFIRELPQPLLTVEYLPAFYSVQGLPSKKDQLQALNLLVLLLPEANRDTLKALLEFLQKVVDHEEKNKMNLWNVA 159 (216)
T ss_pred HHHHHHHHHhCCCccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHccccCCCChHHHH
Confidence 99999999999999999999999987642 34567789999999999999999999999999999999999999
Q ss_pred HhhhcccccCCChh--------HHHHHHHHHHHHHHHHHHHHHhhcccccccC
Q 010347 304 MVFAPNMTQMADPL--------TALMYAVQVMNFLKMLILRTLREREDSVVEH 348 (512)
Q Consensus 304 iVFaPnLlr~~d~~--------~~l~~~~~v~~~l~~LI~~~L~e~~~~if~~ 348 (512)
+||||+||++.+.. ..+..+..+..+++ +||++++.||.-
T Consensus 160 ivfaP~l~~~~~~~~~~~~~~~~~~~~~~~~~~iv~-----~lI~~~~~if~~ 207 (216)
T cd04391 160 MIMAPNLFPPRGKHSKDNESLQEEVNMAAGCANIMR-----LLIRYQDLLWTV 207 (216)
T ss_pred HHhccccCCCCCCCCCcchhHHHHHHHHHHHHHHHH-----HHHHhHHHHhcC
Confidence 99999999974321 12222333344444 445566777753
No 12
>cd04384 RhoGAP_CdGAP RhoGAP_CdGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of CdGAP-like proteins; CdGAP contains an N-terminal RhoGAP domain and a C-terminal proline-rich region, and it is active on both Cdc42 and Rac1 but not RhoA. CdGAP is recruited to focal adhesions via the interaction with the scaffold protein actopaxin (alpha-parvin). Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=1.2e-37 Score=300.04 Aligned_cols=155 Identities=27% Similarity=0.484 Sum_probs=139.5
Q ss_pred cccccChhhhhhhcCCCCCCCCHHHHHHHHHHHhcCCCCcCCceecCCCchhHHHHHHHHhcCCCC------CCCChhhh
Q 010347 157 TVFGVSTESMQLSFDSRGNSVPTILLLMQRHLYGQGGLQAEGIFRINGENSQEEYVRDQLNRGVIP------DGIDIHCL 230 (512)
Q Consensus 157 ~vFGv~Le~l~~~~~~~g~~VP~il~~~i~~L~e~~Gl~~EGIFRvsG~~~~v~~Lr~~ln~g~~~------~~~Dvh~v 230 (512)
++||++|++++. +.|..||.+|..|++|| +.+|+ +|||||++|+..++++|++.+|+|... ...|+|++
T Consensus 1 ~vFG~~L~~~~~---~~g~~iP~il~~~i~~l-~~~g~-~EGIFR~sG~~~~i~~l~~~~d~~~~~~~~~~~~~~d~h~v 75 (195)
T cd04384 1 RVFGCDLTEHLL---NSGQDVPQVLKSCTEFI-EKHGI-VDGIYRLSGIASNIQRLRHEFDSEQIPDLTKDVYIQDIHSV 75 (195)
T ss_pred CcCCccHHHHHH---HcCCCCChHHHHHHHHH-HHcCC-CcCeeeCCCCHHHHHHHHHHHcCCCCCCcccccccccHHHH
Confidence 489999998864 34678999999999999 67888 699999999999999999999998643 23699999
Q ss_pred HHHHHHHHHhCCCCCCCCCCHHHHHhhc-------cHHHHHHHHHhCChhhHHHHHHHHHHHHHhhhccccCCCChhhhH
Q 010347 231 AGLIKAWFRELPAGVLDPLSPEQVMQCQ-------TEEDCLQLVRLLPPTESALLDWAINLMADVVQQENLNKMNARNVA 303 (512)
Q Consensus 231 AsLLK~fLReLPePLL~~~l~e~~~~~~-------~~e~~~~Ll~~LP~~Nr~lL~~Li~fL~~V~~~s~~NKMta~NLA 303 (512)
|++||.|||+||+|||++.+|+.|+++. +.+.++.++.+||+.|+.+|+||+.||++|+++++.|||++.|||
T Consensus 76 a~lLK~flReLPePLi~~~~y~~~~~~~~~~~~~~~~~~l~~li~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLA 155 (195)
T cd04384 76 SSLCKLYFRELPNPLLTYQLYEKFSEAVSAASDEERLEKIHDVIQQLPPPHYRTLEFLMRHLSRLAKYCSITNMHAKNLA 155 (195)
T ss_pred HHHHHHHHHhCCCccCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHhh
Confidence 9999999999999999999999998763 234578899999999999999999999999999999999999999
Q ss_pred HhhhcccccCCCh
Q 010347 304 MVFAPNMTQMADP 316 (512)
Q Consensus 304 iVFaPnLlr~~d~ 316 (512)
+||||+|+++++.
T Consensus 156 ivf~P~L~~~~~~ 168 (195)
T cd04384 156 IVWAPNLLRSKQI 168 (195)
T ss_pred HhhhhhcCCCCcc
Confidence 9999999998653
No 13
>cd04403 RhoGAP_ARHGAP27_15_12_9 RhoGAP_ARHGAP27_15_12_9: GTPase-activator protein (GAP) domain for Rho-like GTPases found in ARHGAP27 (also called CAMGAP1), ARHGAP15, 12 and 9-like proteins; This subgroup of ARHGAPs are multidomain proteins that contain RhoGAP, PH, SH3 and WW domains. Most members that are studied show GAP activity towards Rac1, some additionally show activity towards Cdc42. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=2.9e-37 Score=295.08 Aligned_cols=156 Identities=22% Similarity=0.398 Sum_probs=140.8
Q ss_pred cccChhhhhhhcCCCCCCCCHHHHHHHHHHHhcCCCCcCCceecCCCchhHHHHHHHHhcCCCC-----CCCChhhhHHH
Q 010347 159 FGVSTESMQLSFDSRGNSVPTILLLMQRHLYGQGGLQAEGIFRINGENSQEEYVRDQLNRGVIP-----DGIDIHCLAGL 233 (512)
Q Consensus 159 FGv~Le~l~~~~~~~g~~VP~il~~~i~~L~e~~Gl~~EGIFRvsG~~~~v~~Lr~~ln~g~~~-----~~~Dvh~vAsL 233 (512)
||++|+.++. +.+..||.+|.+|++|| +.+|+++|||||++|+..++++|+..+|.|... ...|+|++|++
T Consensus 1 FGv~L~~~~~---~~~~~iP~~l~~~i~~l-~~~gl~~eGIFR~sg~~~~v~~l~~~~d~~~~~~~~~~~~~d~h~va~l 76 (187)
T cd04403 1 FGCHLEALCQ---RENSTVPKFVRLCIEAV-EKRGLDVDGIYRVSGNLAVIQKLRFAVDHDEKLDLDDSKWEDIHVITGA 76 (187)
T ss_pred CCCChHHHHH---HcCCCCChHHHHHHHHH-HHhCCCcCceeeecCcHHHHHHHHHHhcCCCCCCccccccccHHHHHHH
Confidence 9999999864 34568999999999998 678999999999999999999999999997532 34699999999
Q ss_pred HHHHHHhCCCCCCCCCCHHHHHhhc-------cHHHHHHHHHhCChhhHHHHHHHHHHHHHhhhccccCCCChhhhHHhh
Q 010347 234 IKAWFRELPAGVLDPLSPEQVMQCQ-------TEEDCLQLVRLLPPTESALLDWAINLMADVVQQENLNKMNARNVAMVF 306 (512)
Q Consensus 234 LK~fLReLPePLL~~~l~e~~~~~~-------~~e~~~~Ll~~LP~~Nr~lL~~Li~fL~~V~~~s~~NKMta~NLAiVF 306 (512)
||.|||+||+||||+++|+.|+++. +.+.++.++.+||+.|+.+|+||+.||++|+++++.||||+.|||+||
T Consensus 77 LK~fLReLPepLi~~~~~~~~~~~~~~~~~~~~i~~l~~ll~~LP~~n~~~L~~L~~~L~~v~~~s~~NkM~~~NLAivf 156 (187)
T cd04403 77 LKLFFRELPEPLFPYSLFNDFVAAIKLSDYEQRVSAVKDLIKSLPKPNHDTLKMLFRHLCRVIEHGEKNRMTTQNLAIVF 156 (187)
T ss_pred HHHHHhcCCCCcCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhccccccCChHHhhhhc
Confidence 9999999999999999999998753 234678999999999999999999999999999999999999999999
Q ss_pred hcccccCCChhH
Q 010347 307 APNMTQMADPLT 318 (512)
Q Consensus 307 aPnLlr~~d~~~ 318 (512)
||+|+|+.+...
T Consensus 157 ~P~ll~~~~~~~ 168 (187)
T cd04403 157 GPTLLRPEQETG 168 (187)
T ss_pred cccccCCCCcch
Confidence 999999866543
No 14
>cd04406 RhoGAP_myosin_IXA RhoGAP_myosin_IXA: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in myosins IXA. Class IX myosins contain a characteristic head domain, a neck domain and a tail domain which contains a C6H2-zinc binding motif and a Rho-GAP domain. Class IX myosins are single-headed, processive myosins that are partly cytoplasmic, and partly associated with membranes and the actin cytoskeleton. Class IX myosins are implicated in the regulation of neuronal morphogenesis and function of sensory systems, like the inner ear. There are two major isoforms, myosin IXA and IXB with several splice variants, which are both expressed in developing neurons. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell prolife
Probab=100.00 E-value=2.6e-37 Score=295.54 Aligned_cols=152 Identities=26% Similarity=0.437 Sum_probs=137.9
Q ss_pred cccChhhhhhhcCCCCCCCCHHHHHHHHHHHhcCCCCcCCceecCCCchhHHHHHHHHhcCC---CCCCCChhhhHHHHH
Q 010347 159 FGVSTESMQLSFDSRGNSVPTILLLMQRHLYGQGGLQAEGIFRINGENSQEEYVRDQLNRGV---IPDGIDIHCLAGLIK 235 (512)
Q Consensus 159 FGv~Le~l~~~~~~~g~~VP~il~~~i~~L~e~~Gl~~EGIFRvsG~~~~v~~Lr~~ln~g~---~~~~~Dvh~vAsLLK 235 (512)
||++|+.++. .+..||.+|.+|++|| +++|+.+|||||++|+..++++|++.||.|. ..+..|+|+||++||
T Consensus 1 FGv~L~~l~~----~~~~iP~ii~~~i~~l-~~~gl~~EGIFR~sGs~~~i~~l~~~~d~~~~~~~~~~~d~h~va~lLK 75 (186)
T cd04406 1 FGVELSRLTS----EDRSVPLVVEKLINYI-EMHGLYTEGIYRKSGSTNKIKELRQGLDTDANSVNLDDYNIHVIASVFK 75 (186)
T ss_pred CCCchHHHHH----CCCCCCcHHHHHHHHH-HHhCCCCCceeeCCCcHHHHHHHHHHHccCCCCCCcccCCHHHHHHHHH
Confidence 9999998852 3457999999999998 6799999999999999999999999999874 245789999999999
Q ss_pred HHHHhCCCCCCCCCCHHHHHhhcc-------HHHHHHHHHhCChhhHHHHHHHHHHHHHhhhccccCCCChhhhHHhhhc
Q 010347 236 AWFRELPAGVLDPLSPEQVMQCQT-------EEDCLQLVRLLPPTESALLDWAINLMADVVQQENLNKMNARNVAMVFAP 308 (512)
Q Consensus 236 ~fLReLPePLL~~~l~e~~~~~~~-------~e~~~~Ll~~LP~~Nr~lL~~Li~fL~~V~~~s~~NKMta~NLAiVFaP 308 (512)
.|||+||+||||+++|+.|+++.. ...++.++.+||+.|+.+|+||+.||++|+++++.|||++.|||+||||
T Consensus 76 ~fLReLPePLi~~~~y~~~~~~~~~~~~~~~i~~~~~li~~LP~~n~~~L~~l~~~L~~V~~~s~~NkM~~~NLAivf~P 155 (186)
T cd04406 76 QWLRDLPNPLMTFELYEEFLRAMGLQERRETVRGVYSVIDQLSRTHLNTLERLIFHLVRIALQEETNRMSANALAIVFAP 155 (186)
T ss_pred HHHHhCCCccCCHHHHHHHHHHHhcccHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhCCCccCCChHHHHHHhcc
Confidence 999999999999999999987643 2346788999999999999999999999999999999999999999999
Q ss_pred ccccCCC
Q 010347 309 NMTQMAD 315 (512)
Q Consensus 309 nLlr~~d 315 (512)
+|+|.++
T Consensus 156 ~ll~~p~ 162 (186)
T cd04406 156 CILRCPD 162 (186)
T ss_pred cccCCCC
Confidence 9999854
No 15
>cd04404 RhoGAP-p50rhoGAP RhoGAP-p50rhoGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of p50RhoGAP-like proteins; p50RhoGAP, also known as RhoGAP-1, contains a C-terminal RhoGAP domain and an N-terminal Sec14 domain which binds phosphatidylinositol 3,4,5-trisphosphate (PtdIns(3,4,5)P3). It is ubiquitously expressed and preferentially active on Cdc42. This subgroup also contains closely related ARHGAP8. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=4.4e-37 Score=295.25 Aligned_cols=180 Identities=26% Similarity=0.381 Sum_probs=156.2
Q ss_pred CcccccChhhhhhhcCCCCCCCCHHHHHHHHHHHhcCCCCcCCceecCCCchhHHHHHHHHhcCCCC--CC-CChhhhHH
Q 010347 156 ATVFGVSTESMQLSFDSRGNSVPTILLLMQRHLYGQGGLQAEGIFRINGENSQEEYVRDQLNRGVIP--DG-IDIHCLAG 232 (512)
Q Consensus 156 ~~vFGv~Le~l~~~~~~~g~~VP~il~~~i~~L~e~~Gl~~EGIFRvsG~~~~v~~Lr~~ln~g~~~--~~-~Dvh~vAs 232 (512)
..+||++|+.++.. .+.+..||.+|.+|++|| +++|+++|||||++|+..+++++++.+|+|... +. .|+|++|+
T Consensus 3 ~~~FGv~L~~~~~~-~~~~~~iP~il~~~i~~l-~~~g~~~eGIFR~~g~~~~i~~l~~~~~~~~~~~~~~~~d~~~va~ 80 (195)
T cd04404 3 TQQFGVSLQFLKEK-NPEQEPIPPVVRETVEYL-QAHALTTEGIFRRSANTQVVKEVQQKYNMGEPVDFDQYEDVHLPAV 80 (195)
T ss_pred CCcCCCcHHHHHHh-CCCCCCCChHHHHHHHHH-HHcCCCCCCeeeCCCcHHHHHHHHHHHhCCCCCCcccccCHHHHHH
Confidence 57999999998653 233368999999999999 569999999999999999999999999998632 33 49999999
Q ss_pred HHHHHHHhCCCCCCCCCCHHHHHhhc------cHHHHHHHHHhCChhhHHHHHHHHHHHHHhhhccccCCCChhhhHHhh
Q 010347 233 LIKAWFRELPAGVLDPLSPEQVMQCQ------TEEDCLQLVRLLPPTESALLDWAINLMADVVQQENLNKMNARNVAMVF 306 (512)
Q Consensus 233 LLK~fLReLPePLL~~~l~e~~~~~~------~~e~~~~Ll~~LP~~Nr~lL~~Li~fL~~V~~~s~~NKMta~NLAiVF 306 (512)
+||.|||+||+||++.++|+.++++. +.+.++.++.+||+.|+.+|.||+.||++|+++++.|||++.|||+||
T Consensus 81 ~LK~~lr~Lp~pLi~~~~~~~l~~~~~~~~~~~~~~~~~~i~~LP~~n~~~L~~L~~~l~~i~~~s~~NkM~~~nLa~vf 160 (195)
T cd04404 81 ILKTFLRELPEPLLTFDLYDDIVGFLNVDKEERVERVKQLLQTLPEENYQVLKYLIKFLVQVSAHSDQNKMTNSNLAVVF 160 (195)
T ss_pred HHHHHHHhCCCccCCHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhcccccCCCHhHhheee
Confidence 99999999999999999999998642 445688999999999999999999999999999999999999999999
Q ss_pred hcccccCCChhHHHHHHHHHHHHHHHHHHHH
Q 010347 307 APNMTQMADPLTALMYAVQVMNFLKMLILRT 337 (512)
Q Consensus 307 aPnLlr~~d~~~~l~~~~~v~~~l~~LI~~~ 337 (512)
||+|+|+.+....+.....+..+++.||+|+
T Consensus 161 aP~l~~~~~~~~~l~~~~~~~~~~~~LI~~~ 191 (195)
T cd04404 161 GPNLLWAKDASMSLSAINPINTFTKFLLDHQ 191 (195)
T ss_pred eccccCCCCcccCHHHHHHHHHHHHHHHHhH
Confidence 9999999877555666666666777666554
No 16
>cd04402 RhoGAP_ARHGAP20 RhoGAP_ARHGAP20: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP20-like proteins. ArhGAP20, also known as KIAA1391 and RA-RhoGAP, contains a RhoGAP, a RA, and a PH domain, and ANXL repeats. ArhGAP20 is activated by Rap1 and induces inactivation of Rho, which in turn leads to neurite outgrowth. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=7.5e-37 Score=293.39 Aligned_cols=180 Identities=24% Similarity=0.326 Sum_probs=153.9
Q ss_pred ccccChhhhhhhcCCCCCCCCHHHHHHHHHHHhcCCCCcCCceecCCCchhHHHHHHHHhcCCC--CCCCChhhhHHHHH
Q 010347 158 VFGVSTESMQLSFDSRGNSVPTILLLMQRHLYGQGGLQAEGIFRINGENSQEEYVRDQLNRGVI--PDGIDIHCLAGLIK 235 (512)
Q Consensus 158 vFGv~Le~l~~~~~~~g~~VP~il~~~i~~L~e~~Gl~~EGIFRvsG~~~~v~~Lr~~ln~g~~--~~~~Dvh~vAsLLK 235 (512)
+||+||+.++. +..||.+|..|++|| +++|+.+|||||++|+..+++++++.+|+|.. .+..|+|++|++||
T Consensus 1 ~FG~~L~~~~~-----~~~vP~~i~~~i~~l-~~~g~~~eGiFR~~g~~~~i~~l~~~~~~~~~~~~~~~~~~~va~~lK 74 (192)
T cd04402 1 LFGQPLSNICE-----DDNLPKPILDMLSLL-YQKGPSTEGIFRRSANAKACKELKEKLNSGVEVDLKAEPVLLLASVLK 74 (192)
T ss_pred CCCCcHHHHhC-----CCCCCHHHHHHHHHH-HHhCCCCCCeeeCCCcHHHHHHHHHHHhCCCCCCCccCCHHHHHHHHH
Confidence 69999999863 568999999999999 56899999999999999999999999999963 46789999999999
Q ss_pred HHHHhCCCCCCCCCCHHHHHhhc-------cHHHHHHHHHhCChhhHHHHHHHHHHHHHhhhccccCCCChhhhHHhhhc
Q 010347 236 AWFRELPAGVLDPLSPEQVMQCQ-------TEEDCLQLVRLLPPTESALLDWAINLMADVVQQENLNKMNARNVAMVFAP 308 (512)
Q Consensus 236 ~fLReLPePLL~~~l~e~~~~~~-------~~e~~~~Ll~~LP~~Nr~lL~~Li~fL~~V~~~s~~NKMta~NLAiVFaP 308 (512)
+|||+||+||+|.+.|+.|+++. +.+.++.++.+||..|+.+|.||+.||++|+.+++.||||++|||+||||
T Consensus 75 ~flreLpepLi~~~~~~~~~~~~~~~~~~~~i~~l~~~i~~LP~~n~~~L~~l~~~L~~V~~~~~~NkM~~~nLAi~faP 154 (192)
T cd04402 75 DFLRNIPGSLLSSDLYEEWMSALDQENEEEKIAELQRLLDKLPRPNVLLLKHLICVLHNISQNSETNKMDAFNLAVCIAP 154 (192)
T ss_pred HHHHhCCCccCCHHHHHHHHHHHccCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhccccCCCHHHhhhhccc
Confidence 99999999999999999998753 34567899999999999999999999999999999999999999999999
Q ss_pred ccccCCChhH-HHHHHHHHHHHHHHHHHHHHhhcccccccC
Q 010347 309 NMTQMADPLT-ALMYAVQVMNFLKMLILRTLREREDSVVEH 348 (512)
Q Consensus 309 nLlr~~d~~~-~l~~~~~v~~~l~~LI~~~L~e~~~~if~~ 348 (512)
+|+++.+... .+.....+..+++ +|+++++.||..
T Consensus 155 ~l~~~~~~~~~~~~~~~~~~~~~~-----~LI~~~~~IF~~ 190 (192)
T cd04402 155 SLLWPPASSELQNEDLKKVTSLVQ-----FLIENCQEIFGE 190 (192)
T ss_pred cccCCCCccHHHHHHHHhhhHHHH-----HHHHhHHHhCCC
Confidence 9999976532 2233334444444 445566787754
No 17
>cd04396 RhoGAP_fSAC7_BAG7 RhoGAP_fSAC7_BAG7: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal SAC7 and BAG7-like proteins. Both proteins are GTPase activating proteins of Rho1, but differ functionally in vivo: SAC7, but not BAG7, is involved in the control of Rho1-mediated activation of the PKC-MPK1 pathway. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=4.6e-37 Score=301.93 Aligned_cols=158 Identities=23% Similarity=0.313 Sum_probs=137.7
Q ss_pred ccccChhhhhhhcCC------------CCCCCCHHHHHHHHHHHhcCCCCcCCceecCCCchhHHHHHHHHhcCC-----
Q 010347 158 VFGVSTESMQLSFDS------------RGNSVPTILLLMQRHLYGQGGLQAEGIFRINGENSQEEYVRDQLNRGV----- 220 (512)
Q Consensus 158 vFGv~Le~l~~~~~~------------~g~~VP~il~~~i~~L~e~~Gl~~EGIFRvsG~~~~v~~Lr~~ln~g~----- 220 (512)
||||+|++....... ....||.+|.+|++|| +.+|+++|||||++|+..+++.|++.||.+.
T Consensus 1 ~fg~~l~~~~~~~~~~~~~~~~~~~~~~~~~IP~iv~~ci~~l-~~~gl~~EGIFRvsG~~~~i~~L~~~~d~~~~~~~~ 79 (225)
T cd04396 1 VFGVSLEESLKYASVAISIVDEDGEQYVYGYIPVVVAKCGVYL-KENATEVEGIFRVAGSSKRIRELQLIFSTPPDYGKS 79 (225)
T ss_pred CCCCcHHHHHHhcchheeeecCCCccccCCCCChHHHHHHHHH-HHCCCCCCCceeCCCCHHHHHHHHHHHccCcccCCc
Confidence 799999986443321 1247999999999998 6799999999999999999999999999863
Q ss_pred -CCCCCChhhhHHHHHHHHHhCCCCCCCCCCHHHHHhhc------------------------cHHHHHHHHHhCChhhH
Q 010347 221 -IPDGIDIHCLAGLIKAWFRELPAGVLDPLSPEQVMQCQ------------------------TEEDCLQLVRLLPPTES 275 (512)
Q Consensus 221 -~~~~~Dvh~vAsLLK~fLReLPePLL~~~l~e~~~~~~------------------------~~e~~~~Ll~~LP~~Nr 275 (512)
..+.+|+|++|++||+|||+||+||||+++|+.|.++. +++.++.++.+||+.|+
T Consensus 80 ~~~~~~~vh~va~lLK~fLReLPePLip~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~l~~li~~LP~~n~ 159 (225)
T cd04396 80 FDWDGYTVHDAASVLRRYLNNLPEPLVPLDLYEEFRNPLRKRPRILQYMKGRINEPLNTDIDQAIKEYRDLITRLPNLNR 159 (225)
T ss_pred CCccCCCHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHHhcchhhhhhccccccccccCHHHHHHHHHHHHHHCCHHHH
Confidence 23568999999999999999999999999999987531 22346788999999999
Q ss_pred HHHHHHHHHHHHhhhccccCCCChhhhHHhhhcccccCCCh
Q 010347 276 ALLDWAINLMADVVQQENLNKMNARNVAMVFAPNMTQMADP 316 (512)
Q Consensus 276 ~lL~~Li~fL~~V~~~s~~NKMta~NLAiVFaPnLlr~~d~ 316 (512)
.+|.||+.||++|+++++.|||++.|||+||||+|++.++.
T Consensus 160 ~~L~~L~~~L~~V~~~s~~NkM~~~NLAivfaP~Ll~~~~~ 200 (225)
T cd04396 160 QLLLYLLDLLAVFARNSDKNLMTASNLAAIFQPGILSHPDH 200 (225)
T ss_pred HHHHHHHHHHHHHHHhhccccCChhhhheeeccccCCCCcc
Confidence 99999999999999999999999999999999999988664
No 18
>cd04378 RhoGAP_GMIP_PARG1 RhoGAP_GMIP_PARG1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of GMIP (Gem interacting protein) and PARG1 (PTPL1-associated RhoGAP1). GMIP plays important roles in neurite growth and axonal guidance, and interacts with Gem, a member of the RGK subfamily of the Ras small GTPase superfamily, through the N-terminal half of the protein. GMIP contains a C-terminal RhoGAP domain. GMIP inhibits RhoA function, but is inactive towards Rac1 and Cdc41. PARG1 interacts with Rap2, also a member of the Ras small GTPase superfamily whose exact function is unknown, and shows strong preference for Rho. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases ge
Probab=100.00 E-value=5.3e-37 Score=296.94 Aligned_cols=154 Identities=21% Similarity=0.340 Sum_probs=139.5
Q ss_pred cccChhhhhhhcCCCCCCCCHHHHHHHHHHHhcCCCCcCCceecCCCchhHHHHHHHHhcCCC---CCCCChhhhHHHHH
Q 010347 159 FGVSTESMQLSFDSRGNSVPTILLLMQRHLYGQGGLQAEGIFRINGENSQEEYVRDQLNRGVI---PDGIDIHCLAGLIK 235 (512)
Q Consensus 159 FGv~Le~l~~~~~~~g~~VP~il~~~i~~L~e~~Gl~~EGIFRvsG~~~~v~~Lr~~ln~g~~---~~~~Dvh~vAsLLK 235 (512)
||++|+.++.. .+..||.+|.+|++|| +++|+.+|||||++|+..++++|++.|+.|.. +.+.|+|++|++||
T Consensus 1 FG~~L~~~~~~---~~~~vP~iv~~ci~~i-~~~gl~~eGIfR~sG~~~~i~~l~~~~~~~~~~~~~~~~~~h~va~~LK 76 (203)
T cd04378 1 FGVDFSQVPRD---FPDEVPFIIKKCTSEI-ENRALGVQGIYRVSGSKARVEKLCQAFENGKDLVELSELSPHDISSVLK 76 (203)
T ss_pred CCCChHHHHHH---CCCCCChHHHHHHHHH-HhcCCCCccceeCCCcHHHHHHHHHHHhcCCCccccccCCHHHHHHHHH
Confidence 99999998643 3458999999999998 67999999999999999999999999999862 35689999999999
Q ss_pred HHHHhCCCCCCCCCCHHHHHhhcc---------------------HHHHHHHHHhCChhhHHHHHHHHHHHHHhhhcccc
Q 010347 236 AWFRELPAGVLDPLSPEQVMQCQT---------------------EEDCLQLVRLLPPTESALLDWAINLMADVVQQENL 294 (512)
Q Consensus 236 ~fLReLPePLL~~~l~e~~~~~~~---------------------~e~~~~Ll~~LP~~Nr~lL~~Li~fL~~V~~~s~~ 294 (512)
+|||+||+||+|+++|+.|+++.+ .+.++.++.+||..|+.+|+||+.||++|+++++.
T Consensus 77 ~fLReLpePlip~~~y~~~~~~~~~~~~~~e~~~~~~~~~~~~~~i~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~ 156 (203)
T cd04378 77 LFLRQLPEPLILFRLYNDFIALAKEIQRDTEEDKAPNTPIEVNRIIRKLKDLLRQLPASNYNTLQHLIAHLYRVAEQFEE 156 (203)
T ss_pred HHHHhCCCccCCHHHHHHHHHHHHHhcccccccccccccccHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999986532 24568899999999999999999999999999999
Q ss_pred CCCChhhhHHhhhcccccCCCh
Q 010347 295 NKMNARNVAMVFAPNMTQMADP 316 (512)
Q Consensus 295 NKMta~NLAiVFaPnLlr~~d~ 316 (512)
|||++.|||+||||+|+++...
T Consensus 157 NkM~~~NLaivf~P~Ll~~~~~ 178 (203)
T cd04378 157 NKMSPNNLGIVFGPTLIRPRPG 178 (203)
T ss_pred hCCCHHHhhhhhccccCCCCCC
Confidence 9999999999999999998654
No 19
>cd04393 RhoGAP_FAM13A1a RhoGAP_FAM13A1a: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of FAM13A1, isoform a-like proteins. The function of FAM13A1a is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by up several orders of magnitude.
Probab=100.00 E-value=8.6e-37 Score=292.17 Aligned_cols=177 Identities=27% Similarity=0.477 Sum_probs=153.9
Q ss_pred cccccChhhhhhhcCCCCCCCCHHHHHHHHHHHhcCCCCcCCceecCCCchhHHHHHHHHhcCCCC---CCCChhhhHHH
Q 010347 157 TVFGVSTESMQLSFDSRGNSVPTILLLMQRHLYGQGGLQAEGIFRINGENSQEEYVRDQLNRGVIP---DGIDIHCLAGL 233 (512)
Q Consensus 157 ~vFGv~Le~l~~~~~~~g~~VP~il~~~i~~L~e~~Gl~~EGIFRvsG~~~~v~~Lr~~ln~g~~~---~~~Dvh~vAsL 233 (512)
++||++|++++.+ +..+..||.+|..|++|| +.+|+.+|||||++|+..+++.+++.+|.|... ...|+|++|++
T Consensus 1 ~~FGv~L~~l~~~-~~~~~~vP~il~~~i~~l-~~~gl~~eGIFR~~g~~~~i~~l~~~~d~~~~~~~~~~~d~~~va~~ 78 (189)
T cd04393 1 KVFGVPLQELQQA-GQPENGVPAVVRHIVEYL-EQHGLEQEGLFRVNGNAETVEWLRQRLDSGEEVDLSKEADVCSAASL 78 (189)
T ss_pred CcccccHHHHHhc-cCCCCCCChHHHHHHHHH-HHcCCCCCCeeeCCCCHHHHHHHHHHHcCCCCCCccccCCHHHHHHH
Confidence 4899999998642 233568999999999999 569999999999999999999999999999643 34899999999
Q ss_pred HHHHHHhCCCCCCCCCCHHHHHhhc--------cHHHHHHHHHhCChhhHHHHHHHHHHHHHhhhccccCCCChhhhHHh
Q 010347 234 IKAWFRELPAGVLDPLSPEQVMQCQ--------TEEDCLQLVRLLPPTESALLDWAINLMADVVQQENLNKMNARNVAMV 305 (512)
Q Consensus 234 LK~fLReLPePLL~~~l~e~~~~~~--------~~e~~~~Ll~~LP~~Nr~lL~~Li~fL~~V~~~s~~NKMta~NLAiV 305 (512)
||+|||+||+||++.+.|+.++++. ....++.++..||+.|+.+|.||+.||++|+++++.||||+.|||+|
T Consensus 79 lK~flr~Lp~pLi~~~~~~~l~~~~~~~~~~~~~~~~l~~li~~Lp~~n~~~L~~l~~~l~~V~~~s~~NkMt~~nLA~v 158 (189)
T cd04393 79 LRLFLQELPEGLIPASLQIRLMQLYQDYNGEDEFGRKLRDLLQQLPPVNYSLLKFLCHFLSNVASQHHENRMTAENLAAV 158 (189)
T ss_pred HHHHHHhCCCccCCHHHHHHHHHHHHHccChHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHcccccCCCHHHhhhh
Confidence 9999999999999999999998753 23457899999999999999999999999999999999999999999
Q ss_pred hhcccccCCChhHHHHHHHHHHHHHHHHHH
Q 010347 306 FAPNMTQMADPLTALMYAVQVMNFLKMLIL 335 (512)
Q Consensus 306 FaPnLlr~~d~~~~l~~~~~v~~~l~~LI~ 335 (512)
|||+||+.......+....-+.++|+.||+
T Consensus 159 f~P~l~~~~~~~~~~~~~~~~~~~~~~li~ 188 (189)
T cd04393 159 FGPDVFHVYTDVEDMKEQEICSRIMAKLLE 188 (189)
T ss_pred ccCceeCCCCCcccHHHHHHHHHHHHHHhc
Confidence 999999987766666555556666766664
No 20
>cd04387 RhoGAP_Bcr RhoGAP_Bcr: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of Bcr (breakpoint cluster region protein)-like proteins. Bcr is a multidomain protein with a variety of enzymatic functions. It contains a RhoGAP and a Rho GEF domain, a Ser/Thr kinase domain, an N-terminal oligomerization domain, and a C-terminal PDZ binding domain, in addition to PH and C2 domains. Bcr is a negative regulator of: i) RacGTPase, via the Rho GAP domain, ii) the Ras-Raf-MEK-ERK pathway, via phosphorylation of the Ras binding protein AF-6, and iii) the Wnt signaling pathway through binding beta-catenin. Bcr can form a complex with beta-catenin and Tcf1. The Wnt signaling pathway is involved in cell proliferation, differentiation, and cell renewal. Bcr was discovered as a fusion partner of Abl. The Bcr-Abl fusion is characteristic for a large majority of chronic myelogenous leukemias (CML). Small GTPases cluster into distinct families, and all act as molecular switch
Probab=100.00 E-value=8.5e-37 Score=294.35 Aligned_cols=170 Identities=22% Similarity=0.380 Sum_probs=145.8
Q ss_pred cccChhhhhhhcCCCCCCCCHHHHHHHHHHHhcCCCCcCCceecCCCchhHHHHHHHHhcCCC-----CCCCChhhhHHH
Q 010347 159 FGVSTESMQLSFDSRGNSVPTILLLMQRHLYGQGGLQAEGIFRINGENSQEEYVRDQLNRGVI-----PDGIDIHCLAGL 233 (512)
Q Consensus 159 FGv~Le~l~~~~~~~g~~VP~il~~~i~~L~e~~Gl~~EGIFRvsG~~~~v~~Lr~~ln~g~~-----~~~~Dvh~vAsL 233 (512)
||++|+.++. +.+..||.+|.+|++|| +++|+++|||||++|+..++++|++.+|+|.. .+..|+|+||++
T Consensus 1 FGv~L~~~~~---r~~~~IP~iv~~ci~~l-~~~gl~~EGIFR~sG~~~~i~~l~~~~d~~~~~~~~~~~~~d~h~va~l 76 (196)
T cd04387 1 FGVKISTVTK---RERSKVPYIVRQCVEEV-ERRGMEEVGIYRISGVATDIQALKAAFDTNNKDVSVMLSEMDVNAIAGT 76 (196)
T ss_pred CCCCHHHHHH---hcCCCCChHHHHHHHHH-HHhCCCCCceEEeCCcHHHHHHHHHHHhCCCcccccccccCCHHHHHHH
Confidence 9999998863 34567999999999998 67899999999999999999999999999742 256899999999
Q ss_pred HHHHHHhCCCCCCCCCCHHHHHhhc-------cHHHHHHHHHhCChhhHHHHHHHHHHHHHhhhccccCCCChhhhHHhh
Q 010347 234 IKAWFRELPAGVLDPLSPEQVMQCQ-------TEEDCLQLVRLLPPTESALLDWAINLMADVVQQENLNKMNARNVAMVF 306 (512)
Q Consensus 234 LK~fLReLPePLL~~~l~e~~~~~~-------~~e~~~~Ll~~LP~~Nr~lL~~Li~fL~~V~~~s~~NKMta~NLAiVF 306 (512)
||.|||+||+||||+++|+.|+++. +.+.++.++.+||+.|+.+|.||+.||++|+++++.|||++.|||+||
T Consensus 77 LK~fLReLPePLip~~~y~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivf 156 (196)
T cd04387 77 LKLYFRELPEPLFTDELYPNFAEGIALSDPVAKESCMLNLLLSLPDPNLVTFLFLLHHLKRVAEREEVNKMSLHNLATVF 156 (196)
T ss_pred HHHHHHhCCCccCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhcccccCCCHHHHHHHH
Confidence 9999999999999999999998753 234578899999999999999999999999999999999999999999
Q ss_pred hcccccCCCh----hHHHHHHHHHHHHHHH
Q 010347 307 APNMTQMADP----LTALMYAVQVMNFLKM 332 (512)
Q Consensus 307 aPnLlr~~d~----~~~l~~~~~v~~~l~~ 332 (512)
||+|+++... .+.++...+.++++..
T Consensus 157 ~P~Llr~~~~~~~~~~~~~~~~~~~~~~~~ 186 (196)
T cd04387 157 GPTLLRPSEKESKIPTNTMTDSWSLEVMSQ 186 (196)
T ss_pred ccccCCCCcccccccccccchhHHHHHHHH
Confidence 9999998542 2344444444444433
No 21
>cd04381 RhoGap_RalBP1 RhoGap_RalBP1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in RalBP1 proteins, also known as RLIP, RLIP76 or cytocentrin. RalBP1 plays an important role in endocytosis during interphase. During mitosis, RalBP1 transiently associates with the centromere and has been shown to play an essential role in the proper assembly of the mitotic apparatus. RalBP1 is an effector of the Ral GTPase which itself is an effector of Ras. RalBP1 contains a RhoGAP domain, which shows weak activity towards Rac1 and Cdc42, but not towards Ral, and a Ral effector domain binding motif. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low int
Probab=100.00 E-value=9.9e-37 Score=290.37 Aligned_cols=154 Identities=25% Similarity=0.405 Sum_probs=139.0
Q ss_pred cccChhhhhhhcC-CCCCCCCHHHHHHHHHHHhcCCCCcCCceecCCCchhHHHHHHHHhcCCC--CCCCChhhhHHHHH
Q 010347 159 FGVSTESMQLSFD-SRGNSVPTILLLMQRHLYGQGGLQAEGIFRINGENSQEEYVRDQLNRGVI--PDGIDIHCLAGLIK 235 (512)
Q Consensus 159 FGv~Le~l~~~~~-~~g~~VP~il~~~i~~L~e~~Gl~~EGIFRvsG~~~~v~~Lr~~ln~g~~--~~~~Dvh~vAsLLK 235 (512)
||+||+.++.+.. ..|..||.+|.+|++|| +++|+++|||||++|+..++++|++.+|+|.. .++.|+|++|++||
T Consensus 1 FGv~L~~~~~~~~~~~g~~iP~~v~~~i~~l-~~~gl~~EGIfR~~G~~~~i~~l~~~~~~~~~~~~~~~d~h~va~lLK 79 (182)
T cd04381 1 FGASLSLAVERSRCHDGIDLPLVFRECIDYV-EKHGMKCEGIYKVSGIKSKVDELKAAYNRRESPNLEEYEPPTVASLLK 79 (182)
T ss_pred CCCCHHHHHHhhccCCCCcCChHHHHHHHHH-HHhCCCCCceeecCCcHHHHHHHHHHHcCCCCCCccccChHHHHHHHH
Confidence 9999999865432 23668999999999998 67899999999999999999999999999864 35689999999999
Q ss_pred HHHHhCCCCCCCCCCHHHHHhhc-------cHHHHHHHHHhCChhhHHHHHHHHHHHHHhhhccccCCCChhhhHHhhhc
Q 010347 236 AWFRELPAGVLDPLSPEQVMQCQ-------TEEDCLQLVRLLPPTESALLDWAINLMADVVQQENLNKMNARNVAMVFAP 308 (512)
Q Consensus 236 ~fLReLPePLL~~~l~e~~~~~~-------~~e~~~~Ll~~LP~~Nr~lL~~Li~fL~~V~~~s~~NKMta~NLAiVFaP 308 (512)
.|||+||+||||.++|+.|.++. +...++.++.+||+.|+.+|+||+.||.+|+++++.|||++.|||+||||
T Consensus 80 ~fLReLP~pLi~~~~~~~~~~~~~~~~~~~r~~~l~~li~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivfaP 159 (182)
T cd04381 80 QYLRELPEPLLTKELMPRFEEACGRPTEAEREQELQRLLKELPECNRLLLAWLIVHMDHVIAQELETKMNIQNISIVLSP 159 (182)
T ss_pred HHHHhCCCccCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhCcccCCCHHHHHHHhCc
Confidence 99999999999999999998753 34567899999999999999999999999999999999999999999999
Q ss_pred ccccC
Q 010347 309 NMTQM 313 (512)
Q Consensus 309 nLlr~ 313 (512)
+|+.+
T Consensus 160 ~l~~~ 164 (182)
T cd04381 160 TVQIS 164 (182)
T ss_pred cccCc
Confidence 99754
No 22
>cd04409 RhoGAP_PARG1 RhoGAP_PARG1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of PARG1 (PTPL1-associated RhoGAP1). PARG1 was originally cloned as an interaction partner of PTPL1, an intracellular protein-tyrosine phosphatase. PARG1 interacts with Rap2, also a member of the Ras small GTPase superfamily whose exact function is unknown, and shows strong preference for Rho. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=1.1e-36 Score=296.56 Aligned_cols=153 Identities=22% Similarity=0.356 Sum_probs=138.2
Q ss_pred cccChhhhhhhcCCCCCCCCHHHHHHHHHHHhcCCCCcCCceecCCCchhHHHHHHHHhcCCC---CCCCChhhhHHHHH
Q 010347 159 FGVSTESMQLSFDSRGNSVPTILLLMQRHLYGQGGLQAEGIFRINGENSQEEYVRDQLNRGVI---PDGIDIHCLAGLIK 235 (512)
Q Consensus 159 FGv~Le~l~~~~~~~g~~VP~il~~~i~~L~e~~Gl~~EGIFRvsG~~~~v~~Lr~~ln~g~~---~~~~Dvh~vAsLLK 235 (512)
||++|+.++.+ .+..||.+|.+|++|| +++|+.+|||||++|+..++++|++.||.|.. ....|+|++|++||
T Consensus 1 FG~~L~~~~~~---~~~~iP~il~~ci~~i-e~~gl~~EGIfRvsG~~~~i~~l~~~~d~~~~~~~~~~~~~h~va~~LK 76 (211)
T cd04409 1 FGADFAQVAKK---SPDGIPFIIKKCTSEI-ESRALCLKGIYRVNGAKSRVEKLCQAFENGKDLVELSELSPHDISNVLK 76 (211)
T ss_pred CCCChHHHHHh---CCCCCCcHHHHHHHHH-HHcCCCCCCeeECCCcHHHHHHHHHHHHcCCCccccccCCHHHHHHHHH
Confidence 99999998653 3457999999999998 77999999999999999999999999999863 35689999999999
Q ss_pred HHHHhCCCCCCCCCCHHHHHhhcc-----------------------------HHHHHHHHHhCChhhHHHHHHHHHHHH
Q 010347 236 AWFRELPAGVLDPLSPEQVMQCQT-----------------------------EEDCLQLVRLLPPTESALLDWAINLMA 286 (512)
Q Consensus 236 ~fLReLPePLL~~~l~e~~~~~~~-----------------------------~e~~~~Ll~~LP~~Nr~lL~~Li~fL~ 286 (512)
.|||+||+||||..+|+.|+++.+ ...++.++.+||..||.+|+||+.||+
T Consensus 77 ~fLReLPePLi~~~~~~~~~~~~~~~~~~~e~~~~~~~s~~~~~~~~~~~~~~~~~l~~li~~LP~~n~~~L~~L~~~L~ 156 (211)
T cd04409 77 LYLRQLPEPLILFRLYNEFIGLAKESQHVNETQEAKKNSDKKWPNMCTELNRILLKSKDLLRQLPAPNYNTLQFLIVHLH 156 (211)
T ss_pred HHHHhCCCcccCHHHHHHHHHHHHhhcccccccccccccccccccchhhHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
Confidence 999999999999999999986532 124678899999999999999999999
Q ss_pred HhhhccccCCCChhhhHHhhhcccccCCC
Q 010347 287 DVVQQENLNKMNARNVAMVFAPNMTQMAD 315 (512)
Q Consensus 287 ~V~~~s~~NKMta~NLAiVFaPnLlr~~d 315 (512)
+|+++++.|||++.|||+||||+|+++..
T Consensus 157 ~V~~~s~~NkM~~~NLAivf~P~Llrp~~ 185 (211)
T cd04409 157 RVSEQAEENKMSASNLGIIFGPTLIRPRP 185 (211)
T ss_pred HHHcccccCCCChHHhhhhccccccCCCC
Confidence 99999999999999999999999999854
No 23
>cd04397 RhoGAP_fLRG1 RhoGAP_fLRG1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal LRG1-like proteins. Yeast Lrg1p is required for efficient cell fusion, and mother-daughter cell separation, possibly through acting as a RhoGAP specifically regulating 1,3-beta-glucan synthesis. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=2.6e-36 Score=294.23 Aligned_cols=185 Identities=20% Similarity=0.237 Sum_probs=150.0
Q ss_pred cccChhhhhhhcCCC--------CCCCCHHHHHHHHHHHhcCCCCcCCceecCCCchhHHHHHHHHhcCCC----CCCCC
Q 010347 159 FGVSTESMQLSFDSR--------GNSVPTILLLMQRHLYGQGGLQAEGIFRINGENSQEEYVRDQLNRGVI----PDGID 226 (512)
Q Consensus 159 FGv~Le~l~~~~~~~--------g~~VP~il~~~i~~L~e~~Gl~~EGIFRvsG~~~~v~~Lr~~ln~g~~----~~~~D 226 (512)
|||||+.++.+...+ ...||.+|.+|+.|| +.+|+.+|||||++|+..++++|++.||.|.. ....|
T Consensus 1 FGv~L~~l~~~~~~~~~~~~~~~~~~IP~~l~~~i~~l-~~~gl~~EGIFR~sG~~~~i~~l~~~~d~~~~~~~d~~~~~ 79 (213)
T cd04397 1 FGVPLEILVEKFGADSTLGVGPGKLRIPALIDDIISAM-RQMDMSVEGVFRKNGNIRRLKELTEEIDKNPTEVPDLSKEN 79 (213)
T ss_pred CCCCHHHHHHHhCcccccccCCCCCCCCHHHHHHHHHH-HHcCCCcCCeeeecchHHHHHHHHHHHhcCCCcccccccCc
Confidence 999999997654221 136999999999998 67899999999999999999999999999742 34689
Q ss_pred hhhhHHHHHHHHHhCCCCCCCCCCHHHHHhhcc-------HHHHHHHHHhCChhhHHHHHHHHHHHHHhhhccc-----c
Q 010347 227 IHCLAGLIKAWFRELPAGVLDPLSPEQVMQCQT-------EEDCLQLVRLLPPTESALLDWAINLMADVVQQEN-----L 294 (512)
Q Consensus 227 vh~vAsLLK~fLReLPePLL~~~l~e~~~~~~~-------~e~~~~Ll~~LP~~Nr~lL~~Li~fL~~V~~~s~-----~ 294 (512)
+|++|++||.|||+||+||||.++|+.|+++.+ ...++.++.+||+.||.+|+||+.||++|+.++. .
T Consensus 80 ~~~va~lLK~flReLPepLi~~~~y~~~i~~~~~~~~~~~~~~l~~l~~~LP~~n~~~L~~L~~~L~~V~~~s~i~~~~~ 159 (213)
T cd04397 80 PVQLAALLKKFLRELPDPLLTFKLYRLWISSQKIEDEEERKRVLHLVYCLLPKYHRDTMEVLFSFLKWVSSFSHIDEETG 159 (213)
T ss_pred HHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhhhcccCC
Confidence 999999999999999999999999999988643 2235678899999999999999999999998764 5
Q ss_pred CCCChhhhHHhhhcccccCCChh-HHHHHHHHHHHHHHHHHHHHHhhcccccccCC
Q 010347 295 NKMNARNVAMVFAPNMTQMADPL-TALMYAVQVMNFLKMLILRTLREREDSVVEHT 349 (512)
Q Consensus 295 NKMta~NLAiVFaPnLlr~~d~~-~~l~~~~~v~~~l~~LI~~~L~e~~~~if~~~ 349 (512)
|||++.|||+||||+|+++.... .........+.++ .+|+++++.||+-.
T Consensus 160 NkM~~~NLAivf~P~Ll~~~~~~~~~~~~~~~~~~vv-----~~LI~n~~~if~vp 210 (213)
T cd04397 160 SKMDIHNLATVITPNILYSKTDNPNTGDEYFLAIEAV-----NYLIENNEEFCEVP 210 (213)
T ss_pred CcCChHHhHHhhcccccCCCCCCcchHHHHHHHHHHH-----HHHHHhHHHHhcCC
Confidence 99999999999999999986543 2222222333334 45556668887643
No 24
>cd04373 RhoGAP_p190 RhoGAP_p190: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of p190-like proteins. p190, also named RhoGAP5, plays a role in neuritogenesis and axon branch stability. p190 shows a preference for Rho, over Rac and Cdc42, and consists of an N-terminal GTPase domain and a C-terminal GAP domain. The central portion of p190 contains important regulatory phosphorylation sites. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=1.7e-36 Score=289.58 Aligned_cols=170 Identities=20% Similarity=0.404 Sum_probs=146.2
Q ss_pred cccChhhhhhhcCCCCCCCCHHHHHHHHHHHhcCCCCcCCceecCCCchhHHHHHHHHhcCCC----CCCCChhhhHHHH
Q 010347 159 FGVSTESMQLSFDSRGNSVPTILLLMQRHLYGQGGLQAEGIFRINGENSQEEYVRDQLNRGVI----PDGIDIHCLAGLI 234 (512)
Q Consensus 159 FGv~Le~l~~~~~~~g~~VP~il~~~i~~L~e~~Gl~~EGIFRvsG~~~~v~~Lr~~ln~g~~----~~~~Dvh~vAsLL 234 (512)
||+||++++. .+..||.+|.+|++|| +++|+.+|||||++|+..+++++++.+|+|.. ..+.|+|++|++|
T Consensus 1 FG~pL~~~~~----~~~~IP~~l~~~i~~l-~~~gl~~eGIFR~~G~~~~i~~l~~~~~~~~~~~~~~~~~~~~~va~~l 75 (185)
T cd04373 1 FGVPLANVVT----SEKPIPIFLEKCVEFI-EATGLETEGIYRVSGNKTHLDSLQKQFDQDHNLDLVSKDFTVNAVAGAL 75 (185)
T ss_pred CCCchHHHHh----CCCCCCcHHHHHHHHH-HHcCCCCCCeeecCCcHHHHHHHHHHHhcCCCCCcccccCcHHHHHHHH
Confidence 9999999864 4668999999999999 56999999999999999999999999998752 2357899999999
Q ss_pred HHHHHhCCCCCCCCCCHHHHHhhc-------cHHHHHHHHHhCChhhHHHHHHHHHHHHHhhhccccCCCChhhhHHhhh
Q 010347 235 KAWFRELPAGVLDPLSPEQVMQCQ-------TEEDCLQLVRLLPPTESALLDWAINLMADVVQQENLNKMNARNVAMVFA 307 (512)
Q Consensus 235 K~fLReLPePLL~~~l~e~~~~~~-------~~e~~~~Ll~~LP~~Nr~lL~~Li~fL~~V~~~s~~NKMta~NLAiVFa 307 (512)
|+|||+||+||+|+++|+.|+++. +.+.++.++..||+.|+.+|.||+.||++|+++++.||||+.|||+|||
T Consensus 76 K~fLreLPePlip~~~~~~~~~~~~~~~~~~~i~~l~~li~~LP~~n~~~L~~l~~~L~~v~~~s~~NkM~~~NLAi~f~ 155 (185)
T cd04373 76 KSFFSELPDPLIPYSMHLELVEAAKINDREQRLHALKELLKKFPPENFDVFKYVITHLNKVSQNSKVNLMTSENLSICFW 155 (185)
T ss_pred HHHHhcCCchhccHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHcccccCCChHHHHHHHc
Confidence 999999999999999999998753 3356788999999999999999999999999999999999999999999
Q ss_pred cccccCCC-hhHHHHHHHHHHHHHHHHHHHH
Q 010347 308 PNMTQMAD-PLTALMYAVQVMNFLKMLILRT 337 (512)
Q Consensus 308 PnLlr~~d-~~~~l~~~~~v~~~l~~LI~~~ 337 (512)
|+|+++.. ...++. ....++.+|+++
T Consensus 156 P~L~~~~~~~~~~~~----~~~~~q~~i~~~ 182 (185)
T cd04373 156 PTLMRPDFTSMEALS----ATRIYQTIIETF 182 (185)
T ss_pred cccCCCCCCCHHHHH----ccHHHHHHHHHH
Confidence 99999744 333443 333455555554
No 25
>cd04379 RhoGAP_SYD1 RhoGAP_SYD1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in SYD-1_like proteins. Syd-1, first identified and best studied in C.elegans, has been shown to play an important role in neuronal development by specifying axonal properties. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=3e-36 Score=292.84 Aligned_cols=155 Identities=25% Similarity=0.438 Sum_probs=137.7
Q ss_pred cccChhhhhhhcCCCCCCCCHHHHHHHHHHHhcCCCCcCCceecCCCchhHHHHHHHHhcCCC---C---CCCChhhhHH
Q 010347 159 FGVSTESMQLSFDSRGNSVPTILLLMQRHLYGQGGLQAEGIFRINGENSQEEYVRDQLNRGVI---P---DGIDIHCLAG 232 (512)
Q Consensus 159 FGv~Le~l~~~~~~~g~~VP~il~~~i~~L~e~~Gl~~EGIFRvsG~~~~v~~Lr~~ln~g~~---~---~~~Dvh~vAs 232 (512)
||++|+.++.+ +..+..||.+|.+|++|| +.+|+.+|||||++|+..+++.|++.||++.. . ...|+|+||+
T Consensus 1 FGvpL~~l~~r-e~~~~~IP~iv~~ci~~L-~~~gl~~EGIFR~sGs~~~i~~L~~~~d~~~~~~~l~~~~~~dvh~vA~ 78 (207)
T cd04379 1 FGVPLSRLVER-EGESRDVPIVLQKCVQEI-ERRGLDVIGLYRLCGSAAKKKELRDAFERNSAAVELSEELYPDINVITG 78 (207)
T ss_pred CCCChHHHHhh-cCCCCCcChHHHHHHHHH-HHcCCCcCCceeeCCcHHHHHHHHHHHcCCCCcCCCChhhcccHHHHHH
Confidence 99999998653 234568999999999998 67899999999999999999999999998742 1 1248999999
Q ss_pred HHHHHHHhCCCCCCCCCCHHHHHhhcc----------HHHHHHHHHhCChhhHHHHHHHHHHHHHhhhccccCCCChhhh
Q 010347 233 LIKAWFRELPAGVLDPLSPEQVMQCQT----------EEDCLQLVRLLPPTESALLDWAINLMADVVQQENLNKMNARNV 302 (512)
Q Consensus 233 LLK~fLReLPePLL~~~l~e~~~~~~~----------~e~~~~Ll~~LP~~Nr~lL~~Li~fL~~V~~~s~~NKMta~NL 302 (512)
+||.|||+||+||||+.+|+.|+++.+ .+.++.++.+||..|+.+|+||+.||++|+++++.|||++.||
T Consensus 79 lLK~fLReLPePLip~~~y~~~~~~~~~~~~~~~~~~~~~~~~li~~LP~~n~~~L~~Ll~~L~~V~~~s~~NkMt~~NL 158 (207)
T cd04379 79 VLKDYLRELPEPLITPQLYEMVLEALAVALPNDVQTNTHLTLSIIDCLPLSAKATLLLLLDHLSLVLSNSERNKMTPQNL 158 (207)
T ss_pred HHHHHHHhCCCccCCHHHHHHHHHHHhccChhhHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHcccccCCChHHh
Confidence 999999999999999999999987532 2346788999999999999999999999999999999999999
Q ss_pred HHhhhcccccCCC
Q 010347 303 AMVFAPNMTQMAD 315 (512)
Q Consensus 303 AiVFaPnLlr~~d 315 (512)
|+||||+|+++.+
T Consensus 159 Aivf~P~Ll~~~~ 171 (207)
T cd04379 159 AVCFGPVLMFCSQ 171 (207)
T ss_pred HHhhccccCCCCc
Confidence 9999999999854
No 26
>cd04395 RhoGAP_ARHGAP21 RhoGAP_ARHGAP21: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP21-like proteins. ArhGAP21 is a multi-domain protein, containing RhoGAP, PH and PDZ domains, and is believed to play a role in the organization of the cell-cell junction complex. It has been shown to function as a GAP of Cdc42 and RhoA, and to interact with alpha-catenin and Arf6. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=5.1e-36 Score=288.39 Aligned_cols=181 Identities=24% Similarity=0.412 Sum_probs=149.9
Q ss_pred ccccChhhhhhhcCCCCCCCCHHHHHHHHHHHhcCCCCcCCceecCCCchhHHHHHHHHhcCCCC------CCCChhhhH
Q 010347 158 VFGVSTESMQLSFDSRGNSVPTILLLMQRHLYGQGGLQAEGIFRINGENSQEEYVRDQLNRGVIP------DGIDIHCLA 231 (512)
Q Consensus 158 vFGv~Le~l~~~~~~~g~~VP~il~~~i~~L~e~~Gl~~EGIFRvsG~~~~v~~Lr~~ln~g~~~------~~~Dvh~vA 231 (512)
+|||||+.+.. ...+..||.+|..|+.+| +.+|+++|||||++|+..++++|++.+|+|... +..|+|++|
T Consensus 1 ~FGvpl~~~~~--~~~~~~vP~iv~~~~~~l-~~~g~~~eGIFR~~g~~~~i~~l~~~l~~~~~~~~~~~~~~~d~~~va 77 (196)
T cd04395 1 TFGVPLDDCPP--SSENPYVPLIVEVCCNIV-EARGLETVGIYRVPGNNAAISALQEELNRGGFDIDLQDPRWRDVNVVS 77 (196)
T ss_pred CCCccHHHHhc--ccCCCCCChHHHHHHHHH-HHcCCCCccceeCCCcHHHHHHHHHHHhcCCCCcCccccccccHHHHH
Confidence 59999998642 223458999999999988 789999999999999999999999999998632 346899999
Q ss_pred HHHHHHHHhCCCCCCCCCCHHHHHhhc-------cHHHHHHHHHhCChhhHHHHHHHHHHHHHhhhccccCCCChhhhHH
Q 010347 232 GLIKAWFRELPAGVLDPLSPEQVMQCQ-------TEEDCLQLVRLLPPTESALLDWAINLMADVVQQENLNKMNARNVAM 304 (512)
Q Consensus 232 sLLK~fLReLPePLL~~~l~e~~~~~~-------~~e~~~~Ll~~LP~~Nr~lL~~Li~fL~~V~~~s~~NKMta~NLAi 304 (512)
++||.|||+||+|||+.++|+.|+++. +.+.++.++.+||+.|+.+|.||+.||++|+++++.|||++.|||+
T Consensus 78 ~llK~flr~Lp~pli~~~~~~~~i~~~~~~~~~~~i~~l~~~i~~LP~~n~~~L~~l~~~L~~v~~~~~~NkM~~~nLAi 157 (196)
T cd04395 78 SLLKSFFRKLPEPLFTNELYPDFIEANRIEDPVERLKELRRLIHSLPDHHYETLKHLIRHLKTVADNSEVNKMEPRNLAI 157 (196)
T ss_pred HHHHHHHHhCCCccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhccccccccchHH
Confidence 999999999999999999999998753 2345788999999999999999999999999999999999999999
Q ss_pred hhhcccccCCChhH-H-HHHHHHHHHHHHHHHHHHHhhcccccc
Q 010347 305 VFAPNMTQMADPLT-A-LMYAVQVMNFLKMLILRTLREREDSVV 346 (512)
Q Consensus 305 VFaPnLlr~~d~~~-~-l~~~~~v~~~l~~LI~~~L~e~~~~if 346 (512)
||||+|+|+.+... . +.......++++.|| ++++.+|
T Consensus 158 ~faP~l~r~~~~~~~~~~~~~~~~~~ii~~LI-----~~~d~~f 196 (196)
T cd04395 158 VFGPTLVRTSDDNMETMVTHMPDQCKIVETLI-----QHYDWFF 196 (196)
T ss_pred hhccccCCCCCCCHHHHHHhHHHHHHHHHHHH-----HhCcccC
Confidence 99999999865422 2 222233344454444 5557665
No 27
>cd04377 RhoGAP_myosin_IX RhoGAP_myosin_IX: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in class IX myosins. Class IX myosins contain a characteristic head domain, a neck domain, a tail domain which contains a C6H2-zinc binding motif and a RhoGAP domain. Class IX myosins are single-headed, processive myosins that are partly cytoplasmic, and partly associated with membranes and the actin cytoskeleton. Class IX myosins are implicated in the regulation of neuronal morphogenesis and function of sensory systems, like the inner ear. There are two major isoforms, myosin IXA and IXB with several splice variants, which are both expressed in developing neurons. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell prolifer
Probab=100.00 E-value=7.4e-36 Score=285.18 Aligned_cols=171 Identities=28% Similarity=0.447 Sum_probs=147.9
Q ss_pred cccChhhhhhhcCCCCCCCCHHHHHHHHHHHhcCCCCcCCceecCCCchhHHHHHHHHhcCC---CCCCCChhhhHHHHH
Q 010347 159 FGVSTESMQLSFDSRGNSVPTILLLMQRHLYGQGGLQAEGIFRINGENSQEEYVRDQLNRGV---IPDGIDIHCLAGLIK 235 (512)
Q Consensus 159 FGv~Le~l~~~~~~~g~~VP~il~~~i~~L~e~~Gl~~EGIFRvsG~~~~v~~Lr~~ln~g~---~~~~~Dvh~vAsLLK 235 (512)
||++|+.++ .++..||.+|..|++|| +.+|+++|||||++|+..+++++++.+|+|. ..+.+|+|++|++||
T Consensus 1 FG~~L~~~~----~~~~~vP~~l~~~~~~l-~~~g~~~eGiFR~~g~~~~i~~l~~~l~~~~~~~~~~~~~~~~va~~LK 75 (186)
T cd04377 1 FGVSLSSLT----SEDRSVPLVLEKLLEHI-EMHGLYTEGIYRKSGSANKIKELRQGLDTDPDSVNLEDYPIHVITSVLK 75 (186)
T ss_pred CCCCHHHHH----hCCCCCChHHHHHHHHH-HHcCCCCCceeeCCCCHHHHHHHHHHHhCCCcccCcccCCHHHHHHHHH
Confidence 999999986 24568999999999999 6789999999999999999999999999984 346689999999999
Q ss_pred HHHHhCCCCCCCCCCHHHHHhhc-------cHHHHHHHHHhCChhhHHHHHHHHHHHHHhhhccccCCCChhhhHHhhhc
Q 010347 236 AWFRELPAGVLDPLSPEQVMQCQ-------TEEDCLQLVRLLPPTESALLDWAINLMADVVQQENLNKMNARNVAMVFAP 308 (512)
Q Consensus 236 ~fLReLPePLL~~~l~e~~~~~~-------~~e~~~~Ll~~LP~~Nr~lL~~Li~fL~~V~~~s~~NKMta~NLAiVFaP 308 (512)
+|||+||+|||++++|+.|++.. +...++.++.+||+.|+.+|.||+.||++|+++++.|||++.|||+||||
T Consensus 76 ~flr~LpepLi~~~~~~~~~~~~~~~~~~~~i~~l~~~i~~LP~~n~~~L~~l~~~L~~v~~~s~~NkM~~~nLaivf~P 155 (186)
T cd04377 76 QWLRELPEPLMTFELYENFLRAMELEEKQERVRALYSVLEQLPRANLNTLERLIFHLVRVALQEEVNRMSANALAIVFAP 155 (186)
T ss_pred HHHHcCCCccCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHhh
Confidence 99999999999999999998643 23457889999999999999999999999999999999999999999999
Q ss_pred ccccCCChh---HHHHHHHHHHHHHHHHH
Q 010347 309 NMTQMADPL---TALMYAVQVMNFLKMLI 334 (512)
Q Consensus 309 nLlr~~d~~---~~l~~~~~v~~~l~~LI 334 (512)
+|+|.++.. ..+........++..||
T Consensus 156 ~ll~~~~~~~~~~~~~d~~~~~~~~e~li 184 (186)
T cd04377 156 CILRCPDTADPLQSLQDVSKTTTCVETLI 184 (186)
T ss_pred HhcCCCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 999986543 34444444555555555
No 28
>cd04398 RhoGAP_fRGD1 RhoGAP_fRGD1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal RGD1-like proteins. Yeast Rgd1 is a GAP protein for Rho3 and Rho4 and plays a role in low-pH response. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=1e-35 Score=284.83 Aligned_cols=177 Identities=25% Similarity=0.448 Sum_probs=148.3
Q ss_pred cccChhhhhhhcCCCCCCCCHHHHHHHHHHHhcCCCCcCCceecCCCchhHHHHHHHHhcCCC------C--CCCChhhh
Q 010347 159 FGVSTESMQLSFDSRGNSVPTILLLMQRHLYGQGGLQAEGIFRINGENSQEEYVRDQLNRGVI------P--DGIDIHCL 230 (512)
Q Consensus 159 FGv~Le~l~~~~~~~g~~VP~il~~~i~~L~e~~Gl~~EGIFRvsG~~~~v~~Lr~~ln~g~~------~--~~~Dvh~v 230 (512)
||++|+.++. +.+..||.+|.+|++|| +.+|+++|||||++|+..+++.+++.+|+|.. + ...|+|++
T Consensus 1 FG~~L~~~~~---~~~~~iP~~v~~~i~~l-~~~gl~~eGiFR~~g~~~~i~~l~~~~d~~~~~~~~~~~~~~~~d~~~v 76 (192)
T cd04398 1 FGVPLEDLIL---REGDNVPNIVYQCIQAI-ENFGLNLEGIYRLSGNVSRVNKLKELFDKDPLNVLLISPEDYESDIHSV 76 (192)
T ss_pred CCCChHHHHH---HcCCCCCHHHHHHHHHH-HHhCCCCCCeeecCCcHHHHHHHHHHHccCCccccccccccccccHHHH
Confidence 9999999864 34568999999999998 56899999999999999999999999999752 1 24699999
Q ss_pred HHHHHHHHHhCCCCCCCCCCHHHHHhhc-------cHHHHHHHHHhCChhhHHHHHHHHHHHHHhhhccccCCCChhhhH
Q 010347 231 AGLIKAWFRELPAGVLDPLSPEQVMQCQ-------TEEDCLQLVRLLPPTESALLDWAINLMADVVQQENLNKMNARNVA 303 (512)
Q Consensus 231 AsLLK~fLReLPePLL~~~l~e~~~~~~-------~~e~~~~Ll~~LP~~Nr~lL~~Li~fL~~V~~~s~~NKMta~NLA 303 (512)
|++||.|||+||+||++.++|+.|+++. +.+.++.++.+||..|+.+|.||+.||++|+++++.|||++.|||
T Consensus 77 a~~LK~fLreLp~pLi~~~~~~~~~~~~~~~~~~~~~~~l~~li~~LP~~n~~~L~~l~~~L~~v~~~s~~NkM~~~nLa 156 (192)
T cd04398 77 ASLLKLFFRELPEPLLTKALSREFIEAAKIEDESRRRDALHGLINDLPDANYATLRALMFHLARIKEHESVNRMSVNNLA 156 (192)
T ss_pred HHHHHHHHHhCCCccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHhhhCCCHhHHH
Confidence 9999999999999999999999998763 234578899999999999999999999999999999999999999
Q ss_pred HhhhcccccCCChhHHHHHHHHHHHHHHHHHHHHHhhcccccc
Q 010347 304 MVFAPNMTQMADPLTALMYAVQVMNFLKMLILRTLREREDSVV 346 (512)
Q Consensus 304 iVFaPnLlr~~d~~~~l~~~~~v~~~l~~LI~~~L~e~~~~if 346 (512)
+||||+|++..+.. +......+.+++.|| ++++.||
T Consensus 157 ivf~P~l~~~~~~~--~~~~~~~~~~~~~LI-----~~~~~iF 192 (192)
T cd04398 157 IIWGPTLMNAAPDN--AADMSFQSRVIETLL-----DNAYQIF 192 (192)
T ss_pred HHHhhhhCCCCccc--hhhHHHHHHHHHHHH-----HHHHHhC
Confidence 99999999987641 112222334444444 4446655
No 29
>cd04400 RhoGAP_fBEM3 RhoGAP_fBEM3: RhoGAP (GTPase-activator [GAP] protein for Rho-like small GTPases) domain of fungal BEM3-like proteins. Bem3 is a GAP protein of Cdc42, and is specifically involved in the control of the initial assembly of the septin ring in yeast bud formation. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=5.5e-36 Score=286.83 Aligned_cols=157 Identities=27% Similarity=0.415 Sum_probs=138.1
Q ss_pred ccccChhhhhhhcCC--CCCCCCHHHHHHHHHHHhcCCCCcCCceecCCCchhHHHHHHHHhcCCCC------CCCChhh
Q 010347 158 VFGVSTESMQLSFDS--RGNSVPTILLLMQRHLYGQGGLQAEGIFRINGENSQEEYVRDQLNRGVIP------DGIDIHC 229 (512)
Q Consensus 158 vFGv~Le~l~~~~~~--~g~~VP~il~~~i~~L~e~~Gl~~EGIFRvsG~~~~v~~Lr~~ln~g~~~------~~~Dvh~ 229 (512)
|||++|++++..... .+..||.+|.+|++||.+.+++.+|||||++|+..+++.|++++|.|... ...|+|+
T Consensus 1 vFGv~L~~~~~~~~~~~~~~~iP~iv~~~i~~l~~~g~~~~eGIFR~~G~~~~i~~l~~~~~~~~~~~~~~~~~~~d~h~ 80 (190)
T cd04400 1 IFGSPLEEAVELSSHKYNGRDLPSVVYRCIEYLDKNRAIYEEGIFRLSGSASVIKQLKERFNTEYDVDLFSSSLYPDVHT 80 (190)
T ss_pred CCCCcHHHHHHHhccccCCCCCChHHHHHHHHHHHcCCcCCCCeeeCCCcHHHHHHHHHHHcCCCCCCccccccccCHHH
Confidence 799999987654322 25689999999999996555689999999999999999999999998521 3579999
Q ss_pred hHHHHHHHHHhCCCCCCCCCCHHHHHhhc--------cHHHHHHHHHhCChhhHHHHHHHHHHHHHhhhccccCCCChhh
Q 010347 230 LAGLIKAWFRELPAGVLDPLSPEQVMQCQ--------TEEDCLQLVRLLPPTESALLDWAINLMADVVQQENLNKMNARN 301 (512)
Q Consensus 230 vAsLLK~fLReLPePLL~~~l~e~~~~~~--------~~e~~~~Ll~~LP~~Nr~lL~~Li~fL~~V~~~s~~NKMta~N 301 (512)
||++||.|||+||+||++.++|+.|..+. +...++.++.+||+.|+.+|+||+.||++|+.+++.||||++|
T Consensus 81 va~lLK~flreLP~PLi~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~N 160 (190)
T cd04400 81 VAGLLKLYLRELPTLILGGELHNDFKRLVEENHDRSQRALELKDLVSQLPQANYDLLYVLFSFLRKIIEHSDVNKMNLRN 160 (190)
T ss_pred HHHHHHHHHHhCCcccCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhccccCCChHH
Confidence 99999999999999999999999987643 2345788999999999999999999999999999999999999
Q ss_pred hHHhhhcccccCC
Q 010347 302 VAMVFAPNMTQMA 314 (512)
Q Consensus 302 LAiVFaPnLlr~~ 314 (512)
||+||||+|+++.
T Consensus 161 La~vf~P~L~~~~ 173 (190)
T cd04400 161 VCIVFSPTLNIPA 173 (190)
T ss_pred hhhhcCCCCCCCH
Confidence 9999999998763
No 30
>KOG2200 consensus Tumour suppressor protein p122-RhoGAP/DLC1 [Signal transduction mechanisms]
Probab=100.00 E-value=8e-36 Score=316.26 Aligned_cols=260 Identities=22% Similarity=0.316 Sum_probs=202.5
Q ss_pred CCCCCCCCCCC-----CCCCCCCcccccCCCCCCcchhhhhhhhhchhhHHHHHHHHhhccccccccCCcccccccccC-
Q 010347 45 SCAPNSILLPN-----GDPVDDDDDAEGGSSNNSVAVSREREAEGDQLSLLALLIAIFRKSLVACKSDTRELCAMEISW- 118 (512)
Q Consensus 45 ~~~~~~~~~~~-----~~~~~~~d~~~~~~~~~~~~~~k~~~~~~~~~~~~a~~~~~~~~sl~~~~~~~~~~~~~~~g~- 118 (512)
+-+++++..|. .......|...-+++.|+.+..-...+- . .+.|.+-..=|.|+.++.......++..||.
T Consensus 182 ~~~~~q~~lde~~~~~~~~t~~~El~~s~dSln~~E~~~~erR~-s--~~~as~sr~~r~s~q~sh~Pk~~~~s~~I~d~ 258 (674)
T KOG2200|consen 182 PSSSSQILLDEAQNFVEQRTTPSELARSGDSLNEIEAAGLERRD-S--GVGASLSRPNRHSFQSSHRPKLNSGSTRIGDQ 258 (674)
T ss_pred CCCCcccccCcccCccccccCchhhccCcccccccchhhhhhhh-c--cccccccccccccCccccCCCCCCCCcccCCc
Confidence 33455566552 1356678888889999988887752221 1 1222222222345544433333334455554
Q ss_pred ----CccccccccchhhhhhcccCCCcccCCCCCCCCCCCCCcccccChhhhhhhcCCCCCCCCHHHHHHHHHHHhcCCC
Q 010347 119 ----PTNVRHVAHVTFDRFNGFLGLPVEFEPEVPRRAPSASATVFGVSTESMQLSFDSRGNSVPTILLLMQRHLYGQGGL 194 (512)
Q Consensus 119 ----~~~v~~la~v~~~rl~~~~glp~~~~p~~~~~~p~~~~~vFGv~Le~l~~~~~~~g~~VP~il~~~i~~L~e~~Gl 194 (512)
...+.|++.+.++++++.+|+..+.....+ ...+++.||||||..+. ++.|..||.+|.++++|| +.+|+
T Consensus 259 ~~~qm~~~~~~SLieLTA~~d~~~~~lK~kr~kk--~d~kd~~vFGVPL~vll---~rtG~~lP~~iQq~m~~l-r~~~L 332 (674)
T KOG2200|consen 259 SAQQMKKLHHLSLIELTALMDILGIQLKRKRAKK--VDGKDGGVFGVPLTVLL---QRTGQPLPLSIQQAMRYL-RERGL 332 (674)
T ss_pred CHHHHhhhhhhHHHHHHHHHHHhCchhhhhcccC--CccCCCceeecCceeee---ccCCCcCcHHHHHHHHHH-HHhCc
Confidence 566999999999999999998654432211 22358999999998874 477899999999999998 78999
Q ss_pred CcCCceecCCCchhHHHHHHHHhcCC-----CCCCCChhhhHHHHHHHHHhCCCCCCCCCCHHHHHhh-------ccHHH
Q 010347 195 QAEGIFRINGENSQEEYVRDQLNRGV-----IPDGIDIHCLAGLIKAWFRELPAGVLDPLSPEQVMQC-------QTEED 262 (512)
Q Consensus 195 ~~EGIFRvsG~~~~v~~Lr~~ln~g~-----~~~~~Dvh~vAsLLK~fLReLPePLL~~~l~e~~~~~-------~~~e~ 262 (512)
+++||||++|.+++|+.|++.++... .++....|++|++||+|||+||+|||+.++.+.|++. ++...
T Consensus 333 e~vGifRksGvksRIk~Lrq~lE~~~~~~~~~~d~~~~~DvAdlLKqffRdLPePL~t~k~~~aF~~i~~~~pkkqrlqA 412 (674)
T KOG2200|consen 333 ETVGIFRKSGVKSRIKNLRQMLEAKFYNGEFNWDSQSAHDVADLLKQFFRDLPEPLFTVKYSEAFAQIYQLVPKKQRLQA 412 (674)
T ss_pred cccceeecccHHHHHHHHHHHHhhcccCcccccchhhhhHHHHHHHHHHHhCCcccchhhHHHHHHHHHhcCcHHHHHHH
Confidence 99999999999999999999987743 3477889999999999999999999999999998875 35567
Q ss_pred HHHHHHhCChhhHHHHHHHHHHHHHhhhccccCCCChhhhHHhhhcccccC
Q 010347 263 CLQLVRLLPPTESALLDWAINLMADVVQQENLNKMNARNVAMVFAPNMTQM 313 (512)
Q Consensus 263 ~~~Ll~~LP~~Nr~lL~~Li~fL~~V~~~s~~NKMta~NLAiVFaPnLlr~ 313 (512)
++.+|..||.+||.+|+-|+.||++|+.+++.|+||+.|||+||||+||..
T Consensus 413 l~~aillLPDeNReaLktLL~FL~~V~an~e~N~MT~~NlsvcmAPsLF~l 463 (674)
T KOG2200|consen 413 LQLAILLLPDENREALKTLLEFLNDVIANEEENQMTLMNLSVCMAPSLFHL 463 (674)
T ss_pred HHHHHHhCCcccHHHHHHHHHHHHHHHHhHhhcccchhhhhhhhcchHHhh
Confidence 788899999999999999999999999999999999999999999999964
No 31
>cd04376 RhoGAP_ARHGAP6 RhoGAP_ARHGAP6: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP6-like proteins. ArhGAP6 shows GAP activity towards RhoA, but not towards Cdc42 and Rac1. ArhGAP6 is often deleted in microphthalmia with linear skin defects syndrome (MLS); MLS is a severe X-linked developmental disorder. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=2.8e-35 Score=285.83 Aligned_cols=172 Identities=24% Similarity=0.432 Sum_probs=144.9
Q ss_pred CCCCCCHHHHHHHHHHHhcCCCCcCCceecCCCchhHHHHHHHHhcCCC---CCCCChhhhHHHHHHHHHhCCCCCCCCC
Q 010347 173 RGNSVPTILLLMQRHLYGQGGLQAEGIFRINGENSQEEYVRDQLNRGVI---PDGIDIHCLAGLIKAWFRELPAGVLDPL 249 (512)
Q Consensus 173 ~g~~VP~il~~~i~~L~e~~Gl~~EGIFRvsG~~~~v~~Lr~~ln~g~~---~~~~Dvh~vAsLLK~fLReLPePLL~~~ 249 (512)
.+..||.+|..|++|| +++|+++|||||++|+..++++|++.||.|.. ....|+|+||++||.|||+||+||+|++
T Consensus 5 ~~~~iP~iv~~ci~~l-~~~gl~~EGIFR~~G~~~~i~~l~~~~d~~~~~~~~~~~~~h~va~lLK~fLReLPePLi~~~ 83 (206)
T cd04376 5 IARQVPRLVESCCQHL-EKHGLQTVGIFRVGSSKKRVRQLREEFDRGIDVVLDENHSVHDVAALLKEFFRDMPDPLLPRE 83 (206)
T ss_pred CCCCCCHHHHHHHHHH-HHcCCCCCceeeCCCCHHHHHHHHHHHhcCCCCCCcccCCHHHHHHHHHHHHHhCCCccCCHH
Confidence 3458999999999998 67999999999999999999999999999863 2468999999999999999999999999
Q ss_pred CHHHHHhhcc------HHHHHHHHHhCChhhHHHHHHHHHHHHHhhhccc-----------cCCCChhhhHHhhhccccc
Q 010347 250 SPEQVMQCQT------EEDCLQLVRLLPPTESALLDWAINLMADVVQQEN-----------LNKMNARNVAMVFAPNMTQ 312 (512)
Q Consensus 250 l~e~~~~~~~------~e~~~~Ll~~LP~~Nr~lL~~Li~fL~~V~~~s~-----------~NKMta~NLAiVFaPnLlr 312 (512)
+|+.|+++.. .+.++.++.+||+.||.+|.||+.||++|+++++ .||||+.|||+||||+|+|
T Consensus 84 ~y~~~i~~~~~~~~~~~~~l~~li~~LP~~n~~~L~~L~~~L~~V~~~s~~~~~~~~~~~~~NkM~~~NLAivf~P~Ll~ 163 (206)
T cd04376 84 LYTAFIGTALLEPDEQLEALQLLIYLLPPCNCDTLHRLLKFLHTVAEHAADSIDEDGQEVSGNKMTSLNLATIFGPNLLH 163 (206)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCCCCHHHHHHHhhccccC
Confidence 9999997643 3457889999999999999999999999999986 7999999999999999999
Q ss_pred CCChhH--------HHHHHHHHHHHHHHHHHHHHhhcccccccCCC
Q 010347 313 MADPLT--------ALMYAVQVMNFLKMLILRTLREREDSVVEHTP 350 (512)
Q Consensus 313 ~~d~~~--------~l~~~~~v~~~l~~LI~~~L~e~~~~if~~~p 350 (512)
..+... .+......+.+++.|| ++++.||...+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~vv~~LI-----~~~~~iF~~~~ 204 (206)
T cd04376 164 KQKSGEREFVQASLRIEESTAIINVVQTMI-----DNYEELFMVSP 204 (206)
T ss_pred CCCCcccccchhhhhHHHHHHHHHHHHHHH-----HhHHHHcCCCC
Confidence 865321 2333334444554444 55588887654
No 32
>cd04385 RhoGAP_ARAP RhoGAP_ARAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in ARAPs. ARAPs (also known as centaurin deltas) contain, besides the RhoGAP domain, an Arf GAP, ankyrin repeat ras-associating, and PH domains. Since their ArfGAP activity is PIP3-dependent, ARAPs are considered integration points for phosphoinositide, Arf and Rho signaling. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=8.5e-35 Score=277.54 Aligned_cols=171 Identities=25% Similarity=0.388 Sum_probs=148.8
Q ss_pred ccChhhhhhhcCCCCCCCCHHHHHHHHHHHhcCCCCcCCceecCCCchhHHHHHHHHhcCC-----CCCCCChhhhHHHH
Q 010347 160 GVSTESMQLSFDSRGNSVPTILLLMQRHLYGQGGLQAEGIFRINGENSQEEYVRDQLNRGV-----IPDGIDIHCLAGLI 234 (512)
Q Consensus 160 Gv~Le~l~~~~~~~g~~VP~il~~~i~~L~e~~Gl~~EGIFRvsG~~~~v~~Lr~~ln~g~-----~~~~~Dvh~vAsLL 234 (512)
|..|+..+ ..+..||.+|.+|+.|| +.+|+.+|||||++|+..++++|+++|+.+. .++..|+|+||++|
T Consensus 2 ~~~l~~~~----~~~~~iP~~v~~~i~~l-~~~g~~~eGIFR~sg~~~~i~~L~~~~~~~~~~~~~~~~~~d~~~va~ll 76 (184)
T cd04385 2 GPALEDQQ----LTDNDIPVIVDKCIDFI-TQHGLMSEGIYRKNGKNSSVKKLLEAFRKDARSVQLREGEYTVHDVADVL 76 (184)
T ss_pred CccHHHhh----hCCCCCChHHHHHHHHH-HHhCCCCCceeeCCCcHHHHHHHHHHHhcCCCcCCCCcccCCHHHHHHHH
Confidence 77787654 34568999999999998 6689999999999999999999999998863 13568999999999
Q ss_pred HHHHHhCCCCCCCCCCHHHHHhhc-------cHHHHHHHHHhCChhhHHHHHHHHHHHHHhhhccccCCCChhhhHHhhh
Q 010347 235 KAWFRELPAGVLDPLSPEQVMQCQ-------TEEDCLQLVRLLPPTESALLDWAINLMADVVQQENLNKMNARNVAMVFA 307 (512)
Q Consensus 235 K~fLReLPePLL~~~l~e~~~~~~-------~~e~~~~Ll~~LP~~Nr~lL~~Li~fL~~V~~~s~~NKMta~NLAiVFa 307 (512)
|.|||+||+|||+.++|+.|+.+. +...++.++.+||+.|+.+|.+|+.||++|+++++.|||++.|||+|||
T Consensus 77 K~yLreLP~pLi~~~~~~~~~~~~~~~~~~~~i~~l~~~i~~LP~~n~~~L~~l~~~l~~V~~~~~~NkM~~~nLaiv~~ 156 (184)
T cd04385 77 KRFLRDLPDPLLTSELHAEWIEAAELENKDERIARYKELIRRLPPINRATLKVLIGHLYRVQKHSDENQMSVHNLALVFG 156 (184)
T ss_pred HHHHHhCCCccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHcccccCCChHHhhhhhc
Confidence 999999999999999999998753 2345788999999999999999999999999999999999999999999
Q ss_pred cccccCCChhHHHHHHHHHHHHHHHHHHHH
Q 010347 308 PNMTQMADPLTALMYAVQVMNFLKMLILRT 337 (512)
Q Consensus 308 PnLlr~~d~~~~l~~~~~v~~~l~~LI~~~ 337 (512)
|+|+|..+. .++.....+++++.||++|
T Consensus 157 P~ll~~~~~--~~~~~~~~~~v~~~Li~~~ 184 (184)
T cd04385 157 PTLFQTDEH--SVGQTSHEVKVIEDLIDNY 184 (184)
T ss_pred cccCCCCcc--chhHHHHHHHHHHHHHhcC
Confidence 999998764 4555666777787788653
No 33
>cd04382 RhoGAP_MgcRacGAP RhoGAP_MgcRacGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in MgcRacGAP proteins. MgcRacGAP plays an important dual role in cytokinesis: i) it is part of centralspindlin-complex, together with the mitotic kinesin MKLP1, which is critical for the structure of the central spindle by promoting microtuble bundling. ii) after phosphorylation by aurora B MgcRacGAP becomes an effective regulator of RhoA and plays an important role in the assembly of the contractile ring and the initiation of cytokinesis. MgcRacGAP-like proteins contain a N-terminal C1-like domain, and a C-terminal RhoGAP domain. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway
Probab=100.00 E-value=1.8e-34 Score=277.51 Aligned_cols=161 Identities=23% Similarity=0.405 Sum_probs=139.0
Q ss_pred CCCCCCCHHHHHHHHHHHhcCCCCcCCceecCCCchhHHHHHHHHhcCCC---CCCCChhhhHHHHHHHHHhCCCCCCCC
Q 010347 172 SRGNSVPTILLLMQRHLYGQGGLQAEGIFRINGENSQEEYVRDQLNRGVI---PDGIDIHCLAGLIKAWFRELPAGVLDP 248 (512)
Q Consensus 172 ~~g~~VP~il~~~i~~L~e~~Gl~~EGIFRvsG~~~~v~~Lr~~ln~g~~---~~~~Dvh~vAsLLK~fLReLPePLL~~ 248 (512)
..+..||.+|.+|++|| +++|+.+|||||++|+..+++.++++|++|.. ....|+|++|++||.|||+||+||||.
T Consensus 12 ~~~~~IP~~l~~ci~~i-e~~gl~~EGIFRv~G~~~~i~~l~~~~~~~~~~~~~~~~d~h~vaslLK~fLReLPePLi~~ 90 (193)
T cd04382 12 STSPMIPALIVHCVNEI-EARGLTEEGLYRVSGSEREVKALKEKFLRGKTVPNLSKVDIHVICGCLKDFLRSLKEPLITF 90 (193)
T ss_pred CCCCCccHHHHHHHHHH-HHcCCCCCCeeecCCcHHHHHHHHHHHHcCCCCcccccCCHHHHHHHHHHHHHhCCCcCCCH
Confidence 34568999999999998 78999999999999999999999999998752 355799999999999999999999999
Q ss_pred CCHHHHHhhcc-------HHHHHHHHHhCChhhHHHHHHHHHHHHHhhhccccCCCChhhhHHhhhcccccCCCh----h
Q 010347 249 LSPEQVMQCQT-------EEDCLQLVRLLPPTESALLDWAINLMADVVQQENLNKMNARNVAMVFAPNMTQMADP----L 317 (512)
Q Consensus 249 ~l~e~~~~~~~-------~e~~~~Ll~~LP~~Nr~lL~~Li~fL~~V~~~s~~NKMta~NLAiVFaPnLlr~~d~----~ 317 (512)
++|+.|+++.+ .+.++.++..||..|+.+|.||+.||++|++ ++.|||++.|||+||||+||+.... .
T Consensus 91 ~~y~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~-s~~NkM~~~NLAivf~P~L~~~~~~~~~~~ 169 (193)
T cd04382 91 ALWKEFMEAAEILDEDNSRAALYQAISELPQPNRDTLAFLILHLQRVAQ-SPECKMDINNLARVFGPTIVGYSVPNPDPM 169 (193)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHhc-cccCCCChHHhhhhhhchhcCCCCCCccHH
Confidence 99999987642 3457889999999999999999999999999 9999999999999999999997432 3
Q ss_pred HHHHHHHHHHHHHHHHH
Q 010347 318 TALMYAVQVMNFLKMLI 334 (512)
Q Consensus 318 ~~l~~~~~v~~~l~~LI 334 (512)
..+......+.+++.||
T Consensus 170 ~~~~~~~~~~~vve~Li 186 (193)
T cd04382 170 TILQDTVRQPRVVERLL 186 (193)
T ss_pred HHHHHhHHHHHHHHHHH
Confidence 44444455555565555
No 34
>cd04392 RhoGAP_ARHGAP19 RhoGAP_ARHGAP19: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP19-like proteins. The function of ArhGAP19 is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=1.8e-34 Score=280.52 Aligned_cols=174 Identities=24% Similarity=0.381 Sum_probs=140.7
Q ss_pred cccChhhhhhhcCCCCCCCCHHHHHHHHHHHhcCCCCcCCceecCCCchhHHHHHHHHhcCCCC----CCCChhhhHHHH
Q 010347 159 FGVSTESMQLSFDSRGNSVPTILLLMQRHLYGQGGLQAEGIFRINGENSQEEYVRDQLNRGVIP----DGIDIHCLAGLI 234 (512)
Q Consensus 159 FGv~Le~l~~~~~~~g~~VP~il~~~i~~L~e~~Gl~~EGIFRvsG~~~~v~~Lr~~ln~g~~~----~~~Dvh~vAsLL 234 (512)
||.+|.+- .++ .|.+|++|| ++ |+++|||||++|+..+++.|++++|+|... ..+|+|+||++|
T Consensus 1 ~~~~~~~~---------~~~-~v~~~i~~l-~~-gl~~EGIFR~sGs~~~i~~L~~~~d~~~~~~~~~~~~~~h~va~lL 68 (208)
T cd04392 1 FGAPLTEE---------GIA-QIYQLIEYL-EK-NLRVEGLFRKPGNSARQQELRDLLNSGTDLDLESGGFHAHDCATVL 68 (208)
T ss_pred CCCCcccc---------ccH-HHHHHHHHH-Hh-CCCCcceeeCCCcHHHHHHHHHHHHcCCCCCcccccCCHHHHHHHH
Confidence 78887542 244 778999999 44 999999999999999999999999998643 357999999999
Q ss_pred HHHHHhCCCCCCCCCCHHHHHhhcc-------------------HHHHHHHHHhCChhhHHHHHHHHHHHHHhhhccccC
Q 010347 235 KAWFRELPAGVLDPLSPEQVMQCQT-------------------EEDCLQLVRLLPPTESALLDWAINLMADVVQQENLN 295 (512)
Q Consensus 235 K~fLReLPePLL~~~l~e~~~~~~~-------------------~e~~~~Ll~~LP~~Nr~lL~~Li~fL~~V~~~s~~N 295 (512)
|.|||+||+||||.++|+.|+++.+ ++.++.++.+||+.||.+|+||+.||++|+++++.|
T Consensus 69 K~flReLPePLi~~~~y~~~~~i~~l~~~~~~~~~~~~~~~~~~i~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~N 148 (208)
T cd04392 69 KGFLGELPEPLLTHAHYPAHLQIADLCQFDEKGNKTSAPDKERLLEALQLLLLLLPEENRNLLKLILDLLYQTAKHEDKN 148 (208)
T ss_pred HHHHHhCCCccCCHHHHHHHHHHHHhhcccccccccCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhcccC
Confidence 9999999999999999999865321 234577899999999999999999999999999999
Q ss_pred CCChhhhHHhhhcccccCCCh-hHHHHH-HHHHHHHHHHHHHHHHhhcccccccCC
Q 010347 296 KMNARNVAMVFAPNMTQMADP-LTALMY-AVQVMNFLKMLILRTLREREDSVVEHT 349 (512)
Q Consensus 296 KMta~NLAiVFaPnLlr~~d~-~~~l~~-~~~v~~~l~~LI~~~L~e~~~~if~~~ 349 (512)
||++.|||+||||+|+++.+. ...++. ......++ .+||++++.||..+
T Consensus 149 kM~~~NLAivf~P~Ll~~~~~~~~~~~~~~~~~~~iv-----~~lI~~~~~iF~~~ 199 (208)
T cd04392 149 KMSADNLALLFTPHLICPRNLTPEDLHENAQKLNSIV-----TFMIKHSQKLFKAP 199 (208)
T ss_pred CCCHHHHHHHhCcccCCCCCCCHHHHHHHHHHHHHHH-----HHHHHHHHHHcCCc
Confidence 999999999999999997542 223332 22333333 45556668888654
No 35
>cd04388 RhoGAP_p85 RhoGAP_p85: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in the p85 isoforms of the regulatory subunit of the class IA PI3K (phosphatidylinositol 3'-kinase). This domain is also called Bcr (breakpoint cluster region protein) homology (BH) domain. Class IA PI3Ks are heterodimers, containing a regulatory subunit (p85) and a catalytic subunit (p110) and are activated by growth factor receptor tyrosine kinases (RTKs); this activation is mediated by the p85 subunit. p85 isoforms, alpha and beta, contain a C-terminal p110-binding domain flanked by two SH2 domains, an N-terminal SH3 domain, and a RhoGAP domain flanked by two proline-rich regions. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell p
Probab=100.00 E-value=6.1e-34 Score=274.93 Aligned_cols=166 Identities=19% Similarity=0.304 Sum_probs=139.5
Q ss_pred CCCCCHHHHHHHHHHHhcCCCCcCCceecCCCchhHHHHHHHHhcCC---CCCCCChhhhHHHHHHHHHhCCCCCCCCCC
Q 010347 174 GNSVPTILLLMQRHLYGQGGLQAEGIFRINGENSQEEYVRDQLNRGV---IPDGIDIHCLAGLIKAWFRELPAGVLDPLS 250 (512)
Q Consensus 174 g~~VP~il~~~i~~L~e~~Gl~~EGIFRvsG~~~~v~~Lr~~ln~g~---~~~~~Dvh~vAsLLK~fLReLPePLL~~~l 250 (512)
...+|.+|.+|+++| +++|+++|||||++|+.. +.+|++.||.+. ..+..|+|++|++||.|||+||+||||+.+
T Consensus 12 ~~~~P~iv~~ci~~I-E~~GL~~eGIYRvsgs~~-~~~lk~~~d~~~~~~d~~~~dv~~va~~LK~ylReLPePLip~~~ 89 (200)
T cd04388 12 PDVAPPLLIKLVEAI-EKKGLESSTLYRTQSSSS-LTELRQILDCDAASVDLEQFDVAALADALKRYLLDLPNPVIPAPV 89 (200)
T ss_pred CCCCCHHHHHHHHHH-HHhCCCCCceeeCCCccH-HHHHHHHHhcCCCCCCcccccHHHHHHHHHHHHHhCCCccCCHHH
Confidence 358999999999998 789999999999999775 778999999852 346789999999999999999999999999
Q ss_pred HHHHHhhcc--------HHHHHHHHH--hCChhhHHHHHHHHHHHHHhhhccccCCCChhhhHHhhhcccccCCChhHHH
Q 010347 251 PEQVMQCQT--------EEDCLQLVR--LLPPTESALLDWAINLMADVVQQENLNKMNARNVAMVFAPNMTQMADPLTAL 320 (512)
Q Consensus 251 ~e~~~~~~~--------~e~~~~Ll~--~LP~~Nr~lL~~Li~fL~~V~~~s~~NKMta~NLAiVFaPnLlr~~d~~~~l 320 (512)
|+.|+++.+ .+.++.++. .||..||.+|+||+.||++|++++..|+|++.|||+||||+||++.....
T Consensus 90 y~~fi~~~~~~~~~~~~~~~l~~li~~~~LP~~n~~tL~~Li~HL~rV~~~s~~NkM~~~NLAiVFgPtL~r~~~~~~-- 167 (200)
T cd04388 90 YSEMISRAQEVQSSDEYAQLLRKLIRSPNLPHQYWLTLQYLLKHFFRLCQSSSKNLLSARALAEIFSPLLFRFQPASS-- 167 (200)
T ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHhcccccCCCHHHhHHHhhhhhcCCCcccc--
Confidence 999988642 234566776 79999999999999999999999999999999999999999999865311
Q ss_pred HHHHHHHHHHHHHHHHHHhhccc
Q 010347 321 MYAVQVMNFLKMLILRTLRERED 343 (512)
Q Consensus 321 ~~~~~v~~~l~~LI~~~L~e~~~ 343 (512)
........+++.||.+.|.|...
T Consensus 168 ~~~~~~~~vvE~Li~~~~~e~~~ 190 (200)
T cd04388 168 DSPEFHIRIIEVLITSEWNERQA 190 (200)
T ss_pred cchhhHHHHHHHHHHHHHhhcCC
Confidence 22233455666777788777665
No 36
>cd04399 RhoGAP_fRGD2 RhoGAP_fRGD2: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal RGD2-like proteins. Yeast Rgd2 is a GAP protein for Cdc42 and Rho5. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=5.8e-34 Score=277.73 Aligned_cols=181 Identities=17% Similarity=0.176 Sum_probs=145.2
Q ss_pred cccChhhhhhhcCCCCCCCCHHHHHHHHHHHhcCC--CCcC----CceecCCCchhHHHHHHHHhcCCC-------CCCC
Q 010347 159 FGVSTESMQLSFDSRGNSVPTILLLMQRHLYGQGG--LQAE----GIFRINGENSQEEYVRDQLNRGVI-------PDGI 225 (512)
Q Consensus 159 FGv~Le~l~~~~~~~g~~VP~il~~~i~~L~e~~G--l~~E----GIFRvsG~~~~v~~Lr~~ln~g~~-------~~~~ 225 (512)
|||+|+.++. +.+..||.+|.+|++|| +.+| +..+ ||||++|+.+++++||+.||+|.. .+..
T Consensus 1 FGv~L~~~~~---~~~~~VP~vV~~ci~~i-e~~~~~l~~~~~~~Gi~r~sg~~~~i~~Lr~~~d~~~~~~~~~~~~~~~ 76 (212)
T cd04399 1 FGVDLETRCR---LDKKVVPLIVSAILSYL-DQLYPDLINDEVRRNVWTDPVSLKETHQLRNLLNKPKKPDKEVIILKKF 76 (212)
T ss_pred CCCcHHHHHh---hcCCCCCHHHHHHHHHH-HHhCccccCCcceeeEEEecCcHHHHHHHHHHHcCCCCcchhhhccccC
Confidence 9999999864 34558999999999999 5533 4433 999999999999999999999853 2458
Q ss_pred ChhhhHHHHHHHHHhCCCCCCCCCCHHHHHhh-------------ccHHHHHHHHHhCChhhHHHHHHHHHHHHHhhhcc
Q 010347 226 DIHCLAGLIKAWFRELPAGVLDPLSPEQVMQC-------------QTEEDCLQLVRLLPPTESALLDWAINLMADVVQQE 292 (512)
Q Consensus 226 Dvh~vAsLLK~fLReLPePLL~~~l~e~~~~~-------------~~~e~~~~Ll~~LP~~Nr~lL~~Li~fL~~V~~~s 292 (512)
|+|+||++||.||||||+||+|+++|+.|++. .+...++.++.+||..|+.+|++|+.||++|++++
T Consensus 77 dv~~va~~LK~ylReLPepL~~~~~y~~~~~~~~~~~~~~~~~~~~r~~~l~~~l~~LP~~n~~~L~~li~hL~rv~~~~ 156 (212)
T cd04399 77 EPSTVASVLKLYLLELPDSLIPHDIYDLIRSLYSAYPPSQEDSDTARIQGLQSTLSQLPKSHIATLDAIITHFYRLIEIT 156 (212)
T ss_pred CHHHHHHHHHHHHHHCCCccCCHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999988653 12345788999999999999999999999999987
Q ss_pred ccC---CCChhhhHHhhhcccccCCChhHHHHHHHHHHHHHHHHHHHHHhhcccccccC
Q 010347 293 NLN---KMNARNVAMVFAPNMTQMADPLTALMYAVQVMNFLKMLILRTLREREDSVVEH 348 (512)
Q Consensus 293 ~~N---KMta~NLAiVFaPnLlr~~d~~~~l~~~~~v~~~l~~LI~~~L~e~~~~if~~ 348 (512)
..| ||++.|||+||||+|+|+.......+.....+.++ ..|+++++.||++
T Consensus 157 ~~~~~~kM~~~nLa~vfgp~llr~~~~~~~~~~~~~~~~~~-----e~Li~~~~~iF~~ 210 (212)
T cd04399 157 KMGESEEEYADKLATSLSREILRPIIESLLTIGDKHGYKFF-----RDLLTHKDQIFSE 210 (212)
T ss_pred hcccccccCHHHHHHHhhhhhcCCCcccccccccHHHHHHH-----HHHHHhHHHhccc
Confidence 665 69999999999999999854433233333333344 4445566778864
No 37
>cd04380 RhoGAP_OCRL1 RhoGAP_OCRL1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in OCRL1-like proteins. OCRL1 (oculocerebrorenal syndrome of Lowe 1)-like proteins contain two conserved domains: a central inositol polyphosphate 5-phosphatase domain and a C-terminal Rho GAP domain, this GAP domain lacks the catalytic residue and therefore maybe inactive. OCRL-like proteins are type II inositol polyphosphate 5-phosphatases that can hydrolyze lipid PI(4,5)P2 and PI(3,4,5)P3 and soluble Ins(1,4,5)P3 and Ins(1,3,4,5)P4, but their individual specificities vary. The functionality of the RhoGAP domain is still unclear. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPas
Probab=100.00 E-value=2.6e-33 Score=274.44 Aligned_cols=183 Identities=19% Similarity=0.251 Sum_probs=154.7
Q ss_pred CCcccccChhhhhhhcC-------------------CCCCCCCHHHHHHHHHHHhcCCCCcCCceecCCCchh----HHH
Q 010347 155 SATVFGVSTESMQLSFD-------------------SRGNSVPTILLLMQRHLYGQGGLQAEGIFRINGENSQ----EEY 211 (512)
Q Consensus 155 ~~~vFGv~Le~l~~~~~-------------------~~g~~VP~il~~~i~~L~e~~Gl~~EGIFRvsG~~~~----v~~ 211 (512)
..++||.+|+.|....+ .....||.+|.+|++|| +++|+.+|||||++|+... +++
T Consensus 9 ~~s~fG~sl~~L~~~~~p~~~~~~~~~~~~~~~~~~~~~~~iP~~l~~~i~~L-~~~gl~~eGiFR~~G~~~~~~~~i~~ 87 (220)
T cd04380 9 LPSCFGSSLETLIRLPDPGIRNLIDQLELGDNPDYSEVPLSIPKEIWRLVDYL-YTRGLAQEGLFEEPGLPSEPGELLAE 87 (220)
T ss_pred ecccccccHHHHhcCCchHhhccccccccccCCCCCCCccccCHHHHHHHHHH-HHcCCcccCcccCCCcccchHHHHHH
Confidence 35689999988754211 12348999999999999 5699999999999999999 999
Q ss_pred HHHHHhcCCCC-CCCChhhhHHHHHHHHHhCCCCCCCCCCHHHHHhh--ccHHHHHHHHH-hCChhhHHHHHHHHHHHHH
Q 010347 212 VRDQLNRGVIP-DGIDIHCLAGLIKAWFRELPAGVLDPLSPEQVMQC--QTEEDCLQLVR-LLPPTESALLDWAINLMAD 287 (512)
Q Consensus 212 Lr~~ln~g~~~-~~~Dvh~vAsLLK~fLReLPePLL~~~l~e~~~~~--~~~e~~~~Ll~-~LP~~Nr~lL~~Li~fL~~ 287 (512)
+++.+|.|... ...|+|++|++||.|||+||+||||+.+|+.++++ .+.+.++++++ +||+.|+.+|.||+.||++
T Consensus 88 l~~~ld~~~~~~~~~~~~~va~~LK~fLr~LpePlip~~~y~~~~~~~~~~~~~~~~ll~~~LP~~n~~~l~~L~~fL~~ 167 (220)
T cd04380 88 IRDALDTGSPFNSPGSAESVAEALLLFLESLPDPIIPYSLYERLLEAVANNEEDKRQVIRISLPPVHRNVFVYLCSFLRE 167 (220)
T ss_pred HHHHHhCCCCCCCCCCHHHHHHHHHHHHHhCCCCccCHHHHHHHHHHhcCcHHHHHHHHHhhCCHHHHHHHHHHHHHHHH
Confidence 99999999643 67899999999999999999999999999999998 67788999999 9999999999999999999
Q ss_pred hhhccccCCCChhhhHHhhhcccccCCChhHHHHHHHHHHHHHHHHHHHHHh
Q 010347 288 VVQQENLNKMNARNVAMVFAPNMTQMADPLTALMYAVQVMNFLKMLILRTLR 339 (512)
Q Consensus 288 V~~~s~~NKMta~NLAiVFaPnLlr~~d~~~~l~~~~~v~~~l~~LI~~~L~ 339 (512)
|+++++.|||++.|||+||||+|++....... ........-...+|.++|+
T Consensus 168 v~~~~~~nkM~~~nLA~vF~P~Llr~~~~~~~-~~~~~~~~~~~~~i~~fl~ 218 (220)
T cd04380 168 LLSESADRGLDENTLATIFGRVLLRDPPRAGG-KERRAERDRKRAFIEQFLL 218 (220)
T ss_pred HHHHHHhhCCCHHHhHHHhcchhccCCcccch-hHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999998654332 2222333445556666664
No 38
>cd04374 RhoGAP_Graf RhoGAP_Graf: GTPase-activator protein (GAP) domain for Rho-like GTPases found in GRAF (GTPase regulator associated with focal adhesion kinase); Graf is a multi-domain protein, containing SH3 and PH domains, that binds focal adhesion kinase and influences cytoskeletal changes mediated by Rho proteins. Graf exhibits GAP activity toward RhoA and Cdc42, but only weakly activates Rac1. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=4.6e-33 Score=269.79 Aligned_cols=158 Identities=18% Similarity=0.305 Sum_probs=131.0
Q ss_pred CCHHHHHHHHHHHhcCCCCcCCceecCCCchhHHHHHHH-HhcCC-----C-C--CCCChhhhHHHHHHHHHhCCCCCCC
Q 010347 177 VPTILLLMQRHLYGQGGLQAEGIFRINGENSQEEYVRDQ-LNRGV-----I-P--DGIDIHCLAGLIKAWFRELPAGVLD 247 (512)
Q Consensus 177 VP~il~~~i~~L~e~~Gl~~EGIFRvsG~~~~v~~Lr~~-ln~g~-----~-~--~~~Dvh~vAsLLK~fLReLPePLL~ 247 (512)
.+.+|.+|++|| +.+|+.+|||||++|+..++++++.. ++.+. + . ...|+|+||++||+|||+||+||||
T Consensus 28 ~~~iv~~ci~~l-e~~gl~~EGIFR~sGs~~~i~~l~~~~~d~~~~~~~~id~~~~~~d~h~va~lLK~fLReLPePLi~ 106 (203)
T cd04374 28 GFKFVRKCIEAV-ETRGINEQGLYRVVGVNSKVQKLLSLGLDPKTSTPGDVDLDNSEWEIKTITSALKTYLRNLPEPLMT 106 (203)
T ss_pred cHHHHHHHHHHH-HHcCCCCCCeeeCCCcHHHHHHHHHHHhCcCCCCccccccccccccHHHHHHHHHHHHHcCCCCcCC
Confidence 456889999998 68999999999999999999999875 56541 1 1 2579999999999999999999999
Q ss_pred CCCHHHHHhhc-------cHHHHHHHHHhCChhhHHHHHHHHHHHHHhhhccccCCCChhhhHHhhhcccccCCChh-HH
Q 010347 248 PLSPEQVMQCQ-------TEEDCLQLVRLLPPTESALLDWAINLMADVVQQENLNKMNARNVAMVFAPNMTQMADPL-TA 319 (512)
Q Consensus 248 ~~l~e~~~~~~-------~~e~~~~Ll~~LP~~Nr~lL~~Li~fL~~V~~~s~~NKMta~NLAiVFaPnLlr~~d~~-~~ 319 (512)
+++|+.|+++. +...++.++.+||+.|+.+|+||+.||++|+++++.|||++.|||+||||+|+|+.+.. ..
T Consensus 107 ~~~y~~~i~~~~~~~~~~ri~~l~~li~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivf~P~Llr~~~~~~~~ 186 (203)
T cd04374 107 YELHNDFINAAKSENLESRVNAIHSLVHKLPEKNREMLELLIKHLTNVSDHSKKNLMTVSNLGVVFGPTLLRPQEETVAA 186 (203)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhcccccCCHHHHHHHhccccCCCCCccHHH
Confidence 99999998764 23457889999999999999999999999999999999999999999999999986543 33
Q ss_pred HHHHHHHHHHHHHHHH
Q 010347 320 LMYAVQVMNFLKMLIL 335 (512)
Q Consensus 320 l~~~~~v~~~l~~LI~ 335 (512)
++.......+++.||+
T Consensus 187 ~~~~~~~~~vve~LIe 202 (203)
T cd04374 187 IMDIKFQNIVVEILIE 202 (203)
T ss_pred HHHhHHHHHHhhhHhc
Confidence 4433333344444443
No 39
>smart00324 RhoGAP GTPase-activator protein for Rho-like GTPases. GTPase activator proteins towards Rho/Rac/Cdc42-like small GTPases. etter domain limits and outliers.
Probab=99.97 E-value=7.6e-31 Score=245.75 Aligned_cols=160 Identities=29% Similarity=0.459 Sum_probs=141.8
Q ss_pred CCCHHHHHHHHHHHhcCCCCcCCceecCCCchhHHHHHHHHhcCCC----CCCCChhhhHHHHHHHHHhCCCCCCCCCCH
Q 010347 176 SVPTILLLMQRHLYGQGGLQAEGIFRINGENSQEEYVRDQLNRGVI----PDGIDIHCLAGLIKAWFRELPAGVLDPLSP 251 (512)
Q Consensus 176 ~VP~il~~~i~~L~e~~Gl~~EGIFRvsG~~~~v~~Lr~~ln~g~~----~~~~Dvh~vAsLLK~fLReLPePLL~~~l~ 251 (512)
.||.+|..|+.||+ .+|+++|||||++|+..+++++++.++.|.. ....|+|++|++||.|||+||+||++.+.|
T Consensus 2 ~vP~~l~~~~~~l~-~~g~~~egiFR~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~va~~lK~~Lr~Lp~pli~~~~~ 80 (174)
T smart00324 2 PIPIIVEKCIEYLE-KRGLDTEGIYRVSGSKSRVKELREAFDSGPDPDLDLSEYDVHDVAGLLKLFLRELPEPLIPYELY 80 (174)
T ss_pred CCChHHHHHHHHHH-HcCCCccceeecCCcHHHHHHHHHHHhCCCCCCcccccCCHHHHHHHHHHHHHhCCCccCCHHHH
Confidence 59999999999995 5999999999999999999999999999864 457999999999999999999999999999
Q ss_pred HHHHhhcc-------HHHHHHHHHhCChhhHHHHHHHHHHHHHhhhccccCCCChhhhHHhhhcccccCCChhH-HHHHH
Q 010347 252 EQVMQCQT-------EEDCLQLVRLLPPTESALLDWAINLMADVVQQENLNKMNARNVAMVFAPNMTQMADPLT-ALMYA 323 (512)
Q Consensus 252 e~~~~~~~-------~e~~~~Ll~~LP~~Nr~lL~~Li~fL~~V~~~s~~NKMta~NLAiVFaPnLlr~~d~~~-~l~~~ 323 (512)
+.++++.+ ...++.++.+||..|+.+|.||+.||++|+.+++.|+|+++|||+||||+|++..+... .+...
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~Lp~~~~~~L~~l~~~l~~i~~~~~~n~M~~~nLa~~f~P~l~~~~~~~~~~~~~~ 160 (174)
T smart00324 81 EEFIEAAKVEDETERLRALRELISLLPPANRATLRYLLAHLNRVAEHSEENKMTARNLAIVFGPTLLRPPDGEVASLKDI 160 (174)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhccccCCCCHHHHHHHHhcccCCCCcccHHHHHHH
Confidence 99987543 45678999999999999999999999999999999999999999999999999977544 35555
Q ss_pred HHHHHHHHHHHHH
Q 010347 324 VQVMNFLKMLILR 336 (512)
Q Consensus 324 ~~v~~~l~~LI~~ 336 (512)
.....+++.+|++
T Consensus 161 ~~~~~~i~~li~~ 173 (174)
T smart00324 161 RHQNTVVETLIEN 173 (174)
T ss_pred HHHHHHHHHHHhc
Confidence 6666666666643
No 40
>KOG4269 consensus Rac GTPase-activating protein BCR/ABR [Signal transduction mechanisms]
Probab=99.97 E-value=6.5e-31 Score=287.73 Aligned_cols=196 Identities=22% Similarity=0.416 Sum_probs=156.8
Q ss_pred cCCccccccccchhhhhhcccCCCcccCCCCCCCCCCCCCcccccChhhhh-hhcCCCCCCCCHHHHHHHHHHHhcCCCC
Q 010347 117 SWPTNVRHVAHVTFDRFNGFLGLPVEFEPEVPRRAPSASATVFGVSTESMQ-LSFDSRGNSVPTILLLMQRHLYGQGGLQ 195 (512)
Q Consensus 117 g~~~~v~~la~v~~~rl~~~~glp~~~~p~~~~~~p~~~~~vFGv~Le~l~-~~~~~~g~~VP~il~~~i~~L~e~~Gl~ 195 (512)
.|+++|-.+..+.......+.-- .....+.++....+|||.+|..-. ....+....||.||++|++||+..+|++
T Consensus 862 d~~t~v~~~n~~~ve~~v~~sss----s~Ss~~~~~~~qTgIFG~~~~~kisv~t~~n~s~lP~VVyrCvEyle~~Rgie 937 (1112)
T KOG4269|consen 862 DWYTQVIDMNGIVVETSVKFSSS----STSSKRKPSVKQTGIFGLPLNVKISVVTKRNVSGLPYVVYRCVEYLESCRGIE 937 (1112)
T ss_pred cCccChhhhcCcceeeeEEeccc----cccccCCCcceeceeccccceeeEeeeeeecccCCchHHHHHHHHHHhccccc
Confidence 37888766665555544444321 112334445568899997654211 1112234479999999999998799999
Q ss_pred cCCceecCCCchhHHHHHHHHhcCC------CCCCCChhhhHHHHHHHHHhCCCCCCCCCCHHHHHhhc-------cHHH
Q 010347 196 AEGIFRINGENSQEEYVRDQLNRGV------IPDGIDIHCLAGLIKAWFRELPAGVLDPLSPEQVMQCQ-------TEED 262 (512)
Q Consensus 196 ~EGIFRvsG~~~~v~~Lr~~ln~g~------~~~~~Dvh~vAsLLK~fLReLPePLL~~~l~e~~~~~~-------~~e~ 262 (512)
+|||||++|....|+.|+++||.+. ..++.|||+|||+||+|||+||+|||+.++|..|.... ..-.
T Consensus 938 EeGIyRlSGsaT~Ik~Lke~Fd~~~n~di~~~d~E~dVn~IaGlLKLYlR~LP~~Ll~de~~~~F~~~i~~~npva~~~~ 1017 (1112)
T KOG4269|consen 938 EEGIYRLSGSATDIKALKEQFDENVNKDILSMDSEMDVNAIAGLLKLYLRELPEPLLTDEMYPLFEEGIALSNPVAKEGC 1017 (1112)
T ss_pred hhceEEecccHHHHHHHHHHhccccCchhhhccccccHHHHHHHHHHHHHhCCccccchhhhHHHHhhccCCCHHHHHhh
Confidence 9999999999999999999999983 23678999999999999999999999999999887632 2334
Q ss_pred HHHHHHhCChhhHHHHHHHHHHHHHhhhccccCCCChhhhHHhhhcccccCCCh
Q 010347 263 CLQLVRLLPPTESALLDWAINLMADVVQQENLNKMNARNVAMVFAPNMTQMADP 316 (512)
Q Consensus 263 ~~~Ll~~LP~~Nr~lL~~Li~fL~~V~~~s~~NKMta~NLAiVFaPnLlr~~d~ 316 (512)
+..||.+||++|..+|.+|+.||.+|++++.+|||+++|||+||+|+|.++.+.
T Consensus 1018 ~~~li~slP~aNl~l~~~LlehL~RI~e~ekvNKMnlrNlciVFsPTLniPse~ 1071 (1112)
T KOG4269|consen 1018 MCDLISSLPPANLALFLFLLEHLKRIAEKEKVNKMNLRNLCIVFSPTLNIPSEI 1071 (1112)
T ss_pred HHHHHHhCCChhHHHHHHHHHHHHHHHhhcccccccccceeeeecccccCcHHh
Confidence 688999999999999999999999999999999999999999999999998653
No 41
>cd00159 RhoGAP RhoGAP: GTPase-activator protein (GAP) for Rho-like GTPases; GAPs towards Rho/Rac/Cdc42-like small GTPases. Small GTPases (G proteins) cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when bound to GDP. The Rho family of small G proteins, which includes Cdc42Hs, activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. G proteins generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. The RhoGAPs are one of the major classes of regulators of Rho G proteins.
Probab=99.97 E-value=1.3e-29 Score=234.23 Aligned_cols=157 Identities=30% Similarity=0.490 Sum_probs=138.6
Q ss_pred CHHHHHHHHHHHhcCCCCcCCceecCCCchhHHHHHHHHhcCCC---CCCCChhhhHHHHHHHHHhCCCCCCCCCCHHHH
Q 010347 178 PTILLLMQRHLYGQGGLQAEGIFRINGENSQEEYVRDQLNRGVI---PDGIDIHCLAGLIKAWFRELPAGVLDPLSPEQV 254 (512)
Q Consensus 178 P~il~~~i~~L~e~~Gl~~EGIFRvsG~~~~v~~Lr~~ln~g~~---~~~~Dvh~vAsLLK~fLReLPePLL~~~l~e~~ 254 (512)
|.+|..|++||+ ++|+.++||||++|+..+++.+++.++.|.. ....|+|++|++||.|||+||+|||+.++|+.+
T Consensus 1 P~~l~~~~~~l~-~~~~~~~giFR~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~va~~lK~~l~~Lp~pli~~~~~~~~ 79 (169)
T cd00159 1 PLIIEKCIEYLE-KNGLNTEGIFRVSGSASKIEELKKKFDRGEDIDDLEDYDVHDVASLLKLYLRELPEPLIPFELYDEF 79 (169)
T ss_pred ChHHHHHHHHHH-HcCCCcCCeeeCCCcHHHHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHHcCCCccCCHHHHHHH
Confidence 789999999994 5999999999999999999999999999975 367999999999999999999999999999999
Q ss_pred Hhhc-------cHHHHHHHHHhCChhhHHHHHHHHHHHHHhhhccccCCCChhhhHHhhhcccccCCChh-HHHHHHHHH
Q 010347 255 MQCQ-------TEEDCLQLVRLLPPTESALLDWAINLMADVVQQENLNKMNARNVAMVFAPNMTQMADPL-TALMYAVQV 326 (512)
Q Consensus 255 ~~~~-------~~e~~~~Ll~~LP~~Nr~lL~~Li~fL~~V~~~s~~NKMta~NLAiVFaPnLlr~~d~~-~~l~~~~~v 326 (512)
+.+. +...++.++..||+.|+.+|.||+.||++|+.+++.|+|++.|||+||||+|++..... .........
T Consensus 80 ~~~~~~~~~~~~~~~~~~~i~~Lp~~~~~~L~~l~~~l~~v~~~~~~n~M~~~nLa~~f~p~l~~~~~~~~~~~~~~~~~ 159 (169)
T cd00159 80 IELAKIEDEEERIEALKELLKSLPPENRDLLKYLLKLLHKISQNSEVNKMTASNLAIVFAPTLLRPPDSDDELLEDIKKL 159 (169)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHccccCCCCCccHHHHHHhHHH
Confidence 8764 45668899999999999999999999999999999999999999999999999986654 334444555
Q ss_pred HHHHHHHHH
Q 010347 327 MNFLKMLIL 335 (512)
Q Consensus 327 ~~~l~~LI~ 335 (512)
..+++.||.
T Consensus 160 ~~~~~~li~ 168 (169)
T cd00159 160 NEIVEFLIE 168 (169)
T ss_pred HHHHHHHHh
Confidence 566665553
No 42
>KOG4407 consensus Predicted Rho GTPase-activating protein [General function prediction only]
Probab=99.96 E-value=1.2e-29 Score=283.68 Aligned_cols=257 Identities=21% Similarity=0.281 Sum_probs=185.9
Q ss_pred hhchhhHHHHHHHHhhcccccc---cc--CCcccccccccCCccccccccchhhhhhcccC-CCcccCCCCCCCCCCCCC
Q 010347 83 EGDQLSLLALLIAIFRKSLVAC---KS--DTRELCAMEISWPTNVRHVAHVTFDRFNGFLG-LPVEFEPEVPRRAPSASA 156 (512)
Q Consensus 83 ~~~~~~~~a~~~~~~~~sl~~~---~~--~~~~~~~~~~g~~~~v~~la~v~~~rl~~~~g-lp~~~~p~~~~~~p~~~~ 156 (512)
.+.-+..+|-++..|..+.-.- +. +++.+-.-+.+.|+.-+.--...+.+.....| .+.... ..+.-...+..
T Consensus 1077 ~~ssl~~~at~~~a~s~~~sq~~~p~~~se~k~~p~~d~~~PKsk~~Wkk~~~~~~gsg~g~~~~~~g-~~~~~~a~~~~ 1155 (1973)
T KOG4407|consen 1077 VPSSLQTMATTSSAFSHHSSQAMGPSRDSENKEAPTADATTPKSKRKWKKSKAAKQGSGGGSSGSSSG-SQQQGAAGAPQ 1155 (1973)
T ss_pred CcchhHHHHHHhhhccCccccccCcccccccccCCcccCCCCccccchhhhhhhhccCCCCCCCCccc-ccccccccCcC
Confidence 4567889999999998886322 11 12333333445554433333333333332222 111100 00111112456
Q ss_pred cccccChhhhhhhcCCCCCCCCHHHHHHHHHHHhcCCCCcCCceecCCCchhHHHHHHHHhcCCC--------CCCCChh
Q 010347 157 TVFGVSTESMQLSFDSRGNSVPTILLLMQRHLYGQGGLQAEGIFRINGENSQEEYVRDQLNRGVI--------PDGIDIH 228 (512)
Q Consensus 157 ~vFGv~Le~l~~~~~~~g~~VP~il~~~i~~L~e~~Gl~~EGIFRvsG~~~~v~~Lr~~ln~g~~--------~~~~Dvh 228 (512)
++|||+|.++.. ..-...||.||..|+. |+|.+||.+.|||||+||...|..|++.+|.+.| +.+.|++
T Consensus 1156 ~~~GVrl~dCP~--~~~n~yVP~iV~~C~~-vVEt~Gl~~vGIYRIPGN~AAIs~l~E~ln~~~f~~~v~~~DdrWrDvN 1232 (1973)
T KOG4407|consen 1156 PVLGVRLADCPT--GSCNDYVPMIVQACVC-VVETYGLDTVGIYRIPGNTAAISALKESLNNRGFLSKVESLDDRWRDVN 1232 (1973)
T ss_pred cccccccccCCc--ccccccchHHHHHHHH-HHhhcCccceeEEecCCcHHHHHHHHHHHhccccchhhhccccchhhhH
Confidence 799999988532 2234589999999987 5599999999999999999999999999999842 3468999
Q ss_pred hhHHHHHHHHHhCCCCCCCCCCHHHHHhhccH-------HHHHHHHHhCChhhHHHHHHHHHHHHHhhhccccCCCChhh
Q 010347 229 CLAGLIKAWFRELPAGVLDPLSPEQVMQCQTE-------EDCLQLVRLLPPTESALLDWAINLMADVVQQENLNKMNARN 301 (512)
Q Consensus 229 ~vAsLLK~fLReLPePLL~~~l~e~~~~~~~~-------e~~~~Ll~~LP~~Nr~lL~~Li~fL~~V~~~s~~NKMta~N 301 (512)
+|.+|||.|||.||||||+..+|..|+++.+. ..+++||++||..+|.+|+||+.||.+|+.|+++|||-.+|
T Consensus 1233 VVSSLLK~F~RkLPepL~t~~~Y~~FIeAnrk~~~l~Rl~~Lr~l~~~LPrhhYeTlkfLi~HL~~Vt~nsdvNkMEprN 1312 (1973)
T KOG4407|consen 1233 VVSSLLKMFLRKLPEPLLTDKLYPFFIEANRKSTHLNRLHKLRNLLRKLPRHHYETLKFLIVHLSEVTKNSDVNKMEPRN 1312 (1973)
T ss_pred HHHHHHHHHHHhCCcccccccchhhhhhhcccccHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHhcccccccccccc
Confidence 99999999999999999999999999998654 34789999999999999999999999999999999999999
Q ss_pred hHHhhhcccccCCChhHHHH--HHHHHHHHHHHHHHHHHhhcccccccC
Q 010347 302 VAMVFAPNMTQMADPLTALM--YAVQVMNFLKMLILRTLREREDSVVEH 348 (512)
Q Consensus 302 LAiVFaPnLlr~~d~~~~l~--~~~~v~~~l~~LI~~~L~e~~~~if~~ 348 (512)
||++|||+|+|..++....| ......+++ ++||.+++.||+.
T Consensus 1313 LAi~FGPsiVRts~Dnm~tmVthM~dQckIV-----EtLI~~~dwfF~e 1356 (1973)
T KOG4407|consen 1313 LAIMFGPSIVRTSDDNMATMVTHMSDQCKIV-----ETLIHYNDWFFDE 1356 (1973)
T ss_pred eeEEeccceeccCCccHHHHhhcchhhhhHH-----HHHHhhhhheecc
Confidence 99999999999866433222 222333333 4455566887765
No 43
>PF00620 RhoGAP: RhoGAP domain; InterPro: IPR000198 Members of the Rho family of small G proteins transduce signals from plasma-membrane receptors and control cell adhesion, motility and shape by actin cytoskeleton formation. Like all other GTPases, Rho proteins act as molecular switches, with an active GTP-bound form and an inactive GDP-bound form. The active conformation is promoted by guanine-nucleotide exchange factors, and the inactive state by GTPase-activating proteins (GAPs) which stimulate the intrinsic GTPase activity of small G proteins. This entry is a Rho/Rac/Cdc42-like GAP domain, that is found in a wide variety of large, multi-functional proteins []. A number of structure are known for this family [, , ]. The domain is composed of seven alpha helices. This domain is also known as the breakpoint cluster region-homology (BH) domain.; GO: 0007165 signal transduction, 0005622 intracellular; PDB: 1RGP_A 1AM4_B 1GRN_B 2NGR_B 1OW3_A 1TX4_A 3BYI_B 1XA6_A 3FK2_B 1F7C_A ....
Probab=99.95 E-value=3.9e-28 Score=221.66 Aligned_cols=138 Identities=32% Similarity=0.564 Sum_probs=124.2
Q ss_pred CHHHHHHHHHHHhcCCCCcCCceecCCCchhHHHHHHHHhcCCC----CCCCChhhhHHHHHHHHHhCCCCCCCCCCHHH
Q 010347 178 PTILLLMQRHLYGQGGLQAEGIFRINGENSQEEYVRDQLNRGVI----PDGIDIHCLAGLIKAWFRELPAGVLDPLSPEQ 253 (512)
Q Consensus 178 P~il~~~i~~L~e~~Gl~~EGIFRvsG~~~~v~~Lr~~ln~g~~----~~~~Dvh~vAsLLK~fLReLPePLL~~~l~e~ 253 (512)
|.+|..|++|| +++|+.++||||++|+..+++.+++.++.|.. .+..|+|++|++||.|||+||+||++.++|+.
T Consensus 1 P~~l~~~~~~l-~~~g~~~~gIFR~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~va~~lK~~L~~lp~pli~~~~~~~ 79 (151)
T PF00620_consen 1 PRILNDCVDYL-EKKGLETEGIFRIPGSSSEVQELRNKIDSGEPPNENLENYDVHDVASLLKRFLRELPEPLIPSELYDK 79 (151)
T ss_dssp EHHHHHHHHHH-HHHTTTSTTTTTSS--HHHHHHHHHHHHTTTTCSTTGTTSTHHHHHHHHHHHHHHSSSTSTTHHHHHH
T ss_pred ChHHHHHHHHH-HHhCCCCCCceeccCCHHHHHHHHHHHHhhhcccccccccChhhccccceeeeeccccchhhhhHHHH
Confidence 78999999999 56899999999999999999999999999864 47799999999999999999999999999999
Q ss_pred HHhh-------ccHHHHHHHHHhCChhhHHHHHHHHHHHHHhhhccccCCCChhhhHHhhhcccccCCCh
Q 010347 254 VMQC-------QTEEDCLQLVRLLPPTESALLDWAINLMADVVQQENLNKMNARNVAMVFAPNMTQMADP 316 (512)
Q Consensus 254 ~~~~-------~~~e~~~~Ll~~LP~~Nr~lL~~Li~fL~~V~~~s~~NKMta~NLAiVFaPnLlr~~d~ 316 (512)
|+.+ .+.+.++.++..||..|+.+|.+|+.||++|+.+++.|+|++.|||+||||+|++....
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~l~~lp~~~~~~l~~l~~~l~~v~~~~~~n~m~~~~La~~f~P~l~~~~~~ 149 (151)
T PF00620_consen 80 FIAASKSADEEEQIEAIRSLLQSLPPSNRSLLKYLIELLSKVSDNSEINKMTAENLAIIFAPSLFRPPSS 149 (151)
T ss_dssp HHHHHTSSSHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTGSTS
T ss_pred HhhhhccchhhHHHHHHHHhhhccccccceeehhcccchhhhhcccccccCCHHHHHHHHHhHcCCCCcC
Confidence 9853 23456789999999999999999999999999999999999999999999999997653
No 44
>KOG1450 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]
Probab=99.94 E-value=3.3e-27 Score=256.65 Aligned_cols=159 Identities=25% Similarity=0.451 Sum_probs=142.5
Q ss_pred CCCcccccChhhhhhhcCCCCCCCCHHHHHHHHHHHhcCCCCcCCceecCCCchhHHHHHHHHhcCCC-----CCCCChh
Q 010347 154 ASATVFGVSTESMQLSFDSRGNSVPTILLLMQRHLYGQGGLQAEGIFRINGENSQEEYVRDQLNRGVI-----PDGIDIH 228 (512)
Q Consensus 154 ~~~~vFGv~Le~l~~~~~~~g~~VP~il~~~i~~L~e~~Gl~~EGIFRvsG~~~~v~~Lr~~ln~g~~-----~~~~Dvh 228 (512)
....+||++|+.+|. +.+..||.+|..|++.+ +..|++.+||||++|+...|++||.++|.... ....|+|
T Consensus 452 k~~~vFGs~Lealc~---rE~~~vP~~V~~c~~~I-E~~GLd~~GiYRVsgnl~~Vnklr~~~d~d~~l~l~~~~~~dih 527 (650)
T KOG1450|consen 452 KFDKVFGSPLEALCQ---RENGLVPKIVRLCIEHI-EKFGLDSDGIYRVSGNLASVNKLREQSDQDNSLDLADDRWDDIH 527 (650)
T ss_pred ccCcccCccHHHHhh---ccCCCcchHHHHHHHHH-hhhcccCCceeeecchHHHHHHHHHhcCccccccccccchhHHH
Confidence 347899999999974 45668999999999988 89999999999999999999999999995432 2458999
Q ss_pred hhHHHHHHHHHhCCCCCCCCCCHHHHHhhc-------cHHHHHHHHHhCChhhHHHHHHHHHHHHHhhhccccCCCChhh
Q 010347 229 CLAGLIKAWFRELPAGVLDPLSPEQVMQCQ-------TEEDCLQLVRLLPPTESALLDWAINLMADVVQQENLNKMNARN 301 (512)
Q Consensus 229 ~vAsLLK~fLReLPePLL~~~l~e~~~~~~-------~~e~~~~Ll~~LP~~Nr~lL~~Li~fL~~V~~~s~~NKMta~N 301 (512)
+|+++||.||||||+||++..+...|..+. +.....+++..||..||.||+||+.||++|.+|++.|||+.+|
T Consensus 528 ai~galK~ffreLpdpL~p~~l~~~f~~a~~~~~~~~r~~~~~~li~~lP~~n~~Tlr~lv~HL~rv~shs~kNrMs~~N 607 (650)
T KOG1450|consen 528 AITGALKTFFRELPDPLFPKALSKDFTVALQGELSHTRVDKVEELIGLLPDANYQTLRYLVRHLRRVLSHSDKNRMSRHN 607 (650)
T ss_pred HHHHHHHHHHHhcCCcccChhHhHHHHHHhcccchhhHHHHHHHHHhhCCCcchhHHHHHHHHHHHHHhccccccccccc
Confidence 999999999999999999999999998764 3445688999999999999999999999999999999999999
Q ss_pred hHHhhhcccccCCCh
Q 010347 302 VAMVFAPNMTQMADP 316 (512)
Q Consensus 302 LAiVFaPnLlr~~d~ 316 (512)
||+||||+|+.+.+.
T Consensus 608 LaIVfgpTl~~~~~~ 622 (650)
T KOG1450|consen 608 LAIVFGPTLIKPEQE 622 (650)
T ss_pred eEEEecccccccccc
Confidence 999999999996443
No 45
>KOG4406 consensus CDC42 Rho GTPase-activating protein [Signal transduction mechanisms; Cytoskeleton]
Probab=99.94 E-value=3.1e-27 Score=243.74 Aligned_cols=188 Identities=27% Similarity=0.377 Sum_probs=162.9
Q ss_pred CCCcccccChhhhhhhcCCCCCCCCHHHHHHHHHHHhcCC-CCcCCceecCCCchhHHHHHHHHhcCCCC--C-CCChhh
Q 010347 154 ASATVFGVSTESMQLSFDSRGNSVPTILLLMQRHLYGQGG-LQAEGIFRINGENSQEEYVRDQLNRGVIP--D-GIDIHC 229 (512)
Q Consensus 154 ~~~~vFGv~Le~l~~~~~~~g~~VP~il~~~i~~L~e~~G-l~~EGIFRvsG~~~~v~~Lr~~ln~g~~~--~-~~Dvh~ 229 (512)
..++.||++|+.+. .....+..+|.+|..|+++| ...| +.+|||||.+++.+.+.++++.+|+|... + .-|+|.
T Consensus 249 l~t~qFgvpLqf~~-~~~~e~~~iPpiv~~tV~~L-~~~~kl~tEG~FRrS~s~~~i~~~q~~~n~G~pVdle~~~~~h~ 326 (467)
T KOG4406|consen 249 LPTQQFGVPLQFIP-EKNPEGESIPPIVRSTVEYL-QAHGKLTTEGLFRRSASRSPIREVQELYNTGEPVDLEVYKDLHA 326 (467)
T ss_pred CchhhcCccHHHhc-ccCcccCCCCcHHHHHhhhh-hccceecccceeccccCccchHHHHHHhcCCCcccHHHhccchh
Confidence 56889999999874 33345779999999999998 6777 99999999999999999999999999633 3 345999
Q ss_pred hHHHHHHHHHhCCCCCCCCCCHHHHHhhc------cHHHHHHHHHh-CChhhHHHHHHHHHHHHHhhhccccCCCChhhh
Q 010347 230 LAGLIKAWFRELPAGVLDPLSPEQVMQCQ------TEEDCLQLVRL-LPPTESALLDWAINLMADVVQQENLNKMNARNV 302 (512)
Q Consensus 230 vAsLLK~fLReLPePLL~~~l~e~~~~~~------~~e~~~~Ll~~-LP~~Nr~lL~~Li~fL~~V~~~s~~NKMta~NL 302 (512)
.|.+||.|||+||+||++.++|+.+.... +...+.++++. ||+.|+.++++++.||.+|++|+..|+||+.||
T Consensus 327 ~avllKtF~R~LpePL~t~~~y~~lt~~~~~~~~~~s~s~~qli~~~lp~~ny~L~r~i~sfL~~Is~~~~~N~M~~sNL 406 (467)
T KOG4406|consen 327 PAVLLKTFLRSLPEPLLTFRLYESLTGFSNVDKSLRSSSTDQLIRPTLPEENYSLLRYISSFLVQISDNSKENKMTASNL 406 (467)
T ss_pred hHHHHHHHHhcCCcccchhhhhhhhhccccchHHhhhhHHHHHhhccCChhHHHHHHHHHHHHHHHHHhHHHhhhccccc
Confidence 99999999999999999999999987643 33357888887 999999999999999999999999999999999
Q ss_pred HHhhhcccccCCChhHHHHHHHHHHHHHHHHHHHHHhhcccccccC
Q 010347 303 AMVFAPNMTQMADPLTALMYAVQVMNFLKMLILRTLREREDSVVEH 348 (512)
Q Consensus 303 AiVFaPnLlr~~d~~~~l~~~~~v~~~l~~LI~~~L~e~~~~if~~ 348 (512)
|+||||+|+|..+....+.....+..|.+.||+++ ..+|..
T Consensus 407 a~vfGpnl~w~~~~s~tl~q~npin~F~~~li~~~-----~~~f~~ 447 (467)
T KOG4406|consen 407 AVVFGPNLLWAQDESLTLKQINPINKFTKFLIEHY-----KKLFTT 447 (467)
T ss_pred eeeecccccccccccccHHHhccHHHHHHHHHHhh-----hhccCC
Confidence 99999999999887777777788888888777655 666643
No 46
>KOG1451 consensus Oligophrenin-1 and related Rho GTPase-activating proteins [Signal transduction mechanisms]
Probab=99.92 E-value=1.9e-24 Score=229.33 Aligned_cols=172 Identities=17% Similarity=0.313 Sum_probs=145.0
Q ss_pred HHHHHHHHHHHhcCCCCcCCceecCCCchhHHHHHHHH-hcC------C-CCCCCChhhhHHHHHHHHHhCCCCCCCCCC
Q 010347 179 TILLLMQRHLYGQGGLQAEGIFRINGENSQEEYVRDQL-NRG------V-IPDGIDIHCLAGLIKAWFRELPAGVLDPLS 250 (512)
Q Consensus 179 ~il~~~i~~L~e~~Gl~~EGIFRvsG~~~~v~~Lr~~l-n~g------~-~~~~~Dvh~vAsLLK~fLReLPePLL~~~l 250 (512)
.+|.+||..| +..|++++|+||..|.+.+|++|...+ |.. . ..+.+|+-.|.+.||.|||.||+||+++.+
T Consensus 390 ~fvrkCI~i~-Et~GI~eqGlYR~vGvns~VQKlln~~fDPK~ase~d~dn~~eWeiKTITSaLKtYLRnLpEPLMTY~L 468 (812)
T KOG1451|consen 390 EFVRKCIDIL-ETSGIHEQGLYRNVGVNSKVQKLLNLGFDPKKASEKDGDNLDEWEIKTITSALKTYLRNLPEPLMTYEL 468 (812)
T ss_pred HHHHHHHHHH-HhcCcccccchhhccchHHHHHHHHhcCCCCCccccccchhhhhhhhhHHHHHHHHHHhCCchhhHHHH
Confidence 5789999855 899999999999999999999887664 321 1 225689999999999999999999999999
Q ss_pred HHHHHhhc-------cHHHHHHHHHhCChhhHHHHHHHHHHHHHhhhccccCCCChhhhHHhhhcccccCCChhHHHHHH
Q 010347 251 PEQVMQCQ-------TEEDCLQLVRLLPPTESALLDWAINLMADVVQQENLNKMNARNVAMVFAPNMTQMADPLTALMYA 323 (512)
Q Consensus 251 ~e~~~~~~-------~~e~~~~Ll~~LP~~Nr~lL~~Li~fL~~V~~~s~~NKMta~NLAiVFaPnLlr~~d~~~~l~~~ 323 (512)
+..|+.+. +.++++.||.+||.-||.+|..||.||.+|+.|+..|.||+.||++||||+|+|+.....+-|..
T Consensus 469 Hk~FI~AAKsdnq~yRv~aIHsLVHkLPEKNReMLelLirHLvnVa~hSkeNLMTVSNLGViFGPTLlRpQEETVAAiMd 548 (812)
T KOG1451|consen 469 HKVFINAAKSDNQTYRVDAIHSLVHKLPEKNREMLELLIRHLVNVADHSKENLMTVSNLGVIFGPTLLRPQEETVAAIMD 548 (812)
T ss_pred HHHHHHHHhccchhhhHHHHHHHHHhccHhhHHHHHHHHHHHHHHHhhhhcccccccccceeecccccCchHHHHHHHHc
Confidence 99999764 56678999999999999999999999999999999999999999999999999997654444333
Q ss_pred HHHHHHHHHHHHHHHhhcccccccCCCCCCCC
Q 010347 324 VQVMNFLKMLILRTLREREDSVVEHTPSSRLE 355 (512)
Q Consensus 324 ~~v~~~l~~LI~~~L~e~~~~if~~~p~~~~~ 355 (512)
.+.+ .+++.+||++++.||...|.....
T Consensus 549 IKFQ----NIVVEILIEnyeKIF~t~Pd~S~~ 576 (812)
T KOG1451|consen 549 IKFQ----NIVVEILIENYEKIFKTKPDSSFG 576 (812)
T ss_pred chhh----hhhHHHHHhhhHHHhcCCCCccCC
Confidence 3333 356678888999999887666553
No 47
>KOG1453 consensus Chimaerin and related Rho GTPase activating proteins [Signal transduction mechanisms]
Probab=99.92 E-value=1e-24 Score=250.87 Aligned_cols=193 Identities=23% Similarity=0.313 Sum_probs=165.6
Q ss_pred ccccChhhhhhhcCCCCCCCCHHHHHHHHHHHhcCCCCcCCceecCCCchhHHHHHHHHhcCC---CCCCCChhhhHHHH
Q 010347 158 VFGVSTESMQLSFDSRGNSVPTILLLMQRHLYGQGGLQAEGIFRINGENSQEEYVRDQLNRGV---IPDGIDIHCLAGLI 234 (512)
Q Consensus 158 vFGv~Le~l~~~~~~~g~~VP~il~~~i~~L~e~~Gl~~EGIFRvsG~~~~v~~Lr~~ln~g~---~~~~~Dvh~vAsLL 234 (512)
+||+.|..++. .....||.++.+|+.|| +.+|+.+|||||++|...+++.|...|+.|. .....|+|+++++|
T Consensus 602 ~fG~~l~~~~~---~e~~~vP~i~~~c~~~i-e~~~lr~eGiYRksG~~~~~e~l~~~~e~~~~~v~l~~~dih~vtsVl 677 (918)
T KOG1453|consen 602 LFGVSLSELAR---YEPSTVPFILKKCLREI-EAHLLRVEGIYRKSGSMNQVENLSAVFENGDALVLLSTPDIHAVTSVL 677 (918)
T ss_pred cccHHHHHhhc---cCCCCCCHHHHHHHHHH-HHhhhhccceeeccccHHHHHHHHHHhcCCccceecCCCChHHHHHHH
Confidence 99999988742 24558999999999998 7899999999999999999999999999984 45789999999999
Q ss_pred HHHHHhCCCCCCCCCCHHHHHhhccH-------------HHHHHHHHhCChhhHHHHHHHHHHHHHhhhccccCCCChhh
Q 010347 235 KAWFRELPAGVLDPLSPEQVMQCQTE-------------EDCLQLVRLLPPTESALLDWAINLMADVVQQENLNKMNARN 301 (512)
Q Consensus 235 K~fLReLPePLL~~~l~e~~~~~~~~-------------e~~~~Ll~~LP~~Nr~lL~~Li~fL~~V~~~s~~NKMta~N 301 (512)
|+|||+||+|||++.+|+.|+.+.+. ..++.++..||+.|+.+|.+|+.||.+|+.+++.|+|+..|
T Consensus 678 K~yLr~Lp~pIi~f~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LP~~~~~vl~~li~Hl~RV~~~~~~NrM~~~n 757 (918)
T KOG1453|consen 678 KLYLRKLPEPIIIFNLYDEFLSAAKLPEKDEPSRSTEPLRKLKEVLEQLPRAHYEVLRRLIAHLKRVARYEDVNRMTPKN 757 (918)
T ss_pred HHHHHhccccccccchHHHHHhhhccccccccccccccchhHHHHHHhcCHhHHHHHHHHHHHHHHHHHhhHhhcCCCCC
Confidence 99999999999999999999876433 34678899999999999999999999999999999999999
Q ss_pred hHHhhhcccccCCChhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCCCCC
Q 010347 302 VAMVFAPNMTQMADPLTALMYAVQVMNFLKMLILRTLREREDSVVEHTPSSRL 354 (512)
Q Consensus 302 LAiVFaPnLlr~~d~~~~l~~~~~v~~~l~~LI~~~L~e~~~~if~~~p~~~~ 354 (512)
||+||||+|+|+.+....+.......-.+..++.++.+-....+|...|....
T Consensus 758 laivF~Ptllr~~d~~~~~~~~~~~~y~~~~~l~~~~~~~~~~~~~e~p~~~~ 810 (918)
T KOG1453|consen 758 LAIVFAPTLLRPPDGTRDLTDMKDKNYPLAAQLPEYKITLHNLSFLEEPPKIL 810 (918)
T ss_pred ccccccCcccCCCCCcchhhhhccchhhHHHhcchHHHHHhhcccccCCcccc
Confidence 99999999999988766665544444446667777777777777766555444
No 48
>KOG2710 consensus Rho GTPase-activating protein [Signal transduction mechanisms; Cytoskeleton]
Probab=99.92 E-value=6.2e-25 Score=230.16 Aligned_cols=167 Identities=23% Similarity=0.377 Sum_probs=140.7
Q ss_pred CCCCHHHHHHHHHHHhcCCCCcCCceecCCCchhHHHHHHHHhcCC-------CCCCCChhhhHHHHHHHHHhCCCCCCC
Q 010347 175 NSVPTILLLMQRHLYGQGGLQAEGIFRINGENSQEEYVRDQLNRGV-------IPDGIDIHCLAGLIKAWFRELPAGVLD 247 (512)
Q Consensus 175 ~~VP~il~~~i~~L~e~~Gl~~EGIFRvsG~~~~v~~Lr~~ln~g~-------~~~~~Dvh~vAsLLK~fLReLPePLL~ 247 (512)
..||.+|..|.+|| +++|+.+.||||++|+..++++|++.|+++. .++++.+|++|+|||.|||+||+||||
T Consensus 92 ~~IP~vv~~c~~~l-k~~~ls~~GIFRv~gs~kRvr~L~~~fd~~p~y~~~~~~~e~~nvHDvAaLLK~flr~lp~pLLP 170 (412)
T KOG2710|consen 92 GQIPRVVAKCGQYL-KKNGLSVVGIFRVAGSIKRVRQLREEFDSPPDYGIDVNDWEDFNVHDVAALLKEFLRDLPDPLLP 170 (412)
T ss_pred eeCcHHHHHHHHHH-HHcCceeeeeeecCCchHHHHHHHHHhccCccccccccccccccHHHHHHHHHHHHHhCCcccCC
Confidence 48999999999998 7899999999999999999999999999983 346789999999999999999999999
Q ss_pred CCCHHHHHhhc-------cHHHHHHHHHhCChhhHHHHHHHHHHHHHhhhccccC-----------CCChhhhHHhhhcc
Q 010347 248 PLSPEQVMQCQ-------TEEDCLQLVRLLPPTESALLDWAINLMADVVQQENLN-----------KMNARNVAMVFAPN 309 (512)
Q Consensus 248 ~~l~e~~~~~~-------~~e~~~~Ll~~LP~~Nr~lL~~Li~fL~~V~~~s~~N-----------KMta~NLAiVFaPn 309 (512)
.++|+.|+... +...++.++..||..|+++|.+|+.||+.++.|++.| ||++.|||+||+|+
T Consensus 171 ~~LY~~f~~p~kl~~e~e~~~~l~l~~~llp~~nr~~l~~ll~fL~~~a~~s~d~~~kdg~~~~gnkm~~~nlatIf~P~ 250 (412)
T KOG2710|consen 171 LELYESFINPAKLEPETEQLGVLQLLIYLLPKCNRDTLEVLLGFLSVVASHAEDNIGKDGQEVNGNKMTSENLATIFGPN 250 (412)
T ss_pred HHHHHHHhhhhcCCcHHHHHHHHHHHHHhcCccchhHHHHHHhhhhhhhcccccccccccccccCcccchhhhhhhhcch
Confidence 99999998754 2335678899999999999999999999999999998 99999999999999
Q ss_pred cccC----CChhH-----HHHHHHHHHHHHHHHHHHHHhhccccccc
Q 010347 310 MTQM----ADPLT-----ALMYAVQVMNFLKMLILRTLREREDSVVE 347 (512)
Q Consensus 310 Llr~----~d~~~-----~l~~~~~v~~~l~~LI~~~L~e~~~~if~ 347 (512)
++.. .+... .......+.+|.+++|+++ +.+|.
T Consensus 251 iL~k~~~~~~~~s~~~~~~~s~~~~i~~~~~~~~~N~-----e~~f~ 292 (412)
T KOG2710|consen 251 ILYKLKGSHKELSVTGVANESESEAIVNFAQMMIENL-----EALFQ 292 (412)
T ss_pred hhhcccCCCcccccccccchhhHHHHHHHHHHhhhhH-----HHhhc
Confidence 9984 22111 1223344555665555444 66665
No 49
>KOG1117 consensus Rho- and Arf-GTPase activating protein ARAP3 [Signal transduction mechanisms; Cytoskeleton]
Probab=99.89 E-value=2.9e-23 Score=227.12 Aligned_cols=162 Identities=25% Similarity=0.314 Sum_probs=140.2
Q ss_pred CCCCCHHHHHHHHHHHhcCCCCcCCceecCCCchhHHHHHHHHhcCCC-----CCCCChhhhHHHHHHHHHhCCCCCCCC
Q 010347 174 GNSVPTILLLMQRHLYGQGGLQAEGIFRINGENSQEEYVRDQLNRGVI-----PDGIDIHCLAGLIKAWFRELPAGVLDP 248 (512)
Q Consensus 174 g~~VP~il~~~i~~L~e~~Gl~~EGIFRvsG~~~~v~~Lr~~ln~g~~-----~~~~Dvh~vAsLLK~fLReLPePLL~~ 248 (512)
++.||.||..||.|+ .++||..|||||++|...++..|.+.|-++.. ..+..+.+|+++||+|||+|++||++.
T Consensus 724 ~~dIPvIVd~CI~FV-TqyGl~cegIYrknG~~~~~~~lLeslr~Dars~~lregeh~vedVtdvLk~FlrdlddpLft~ 802 (1186)
T KOG1117|consen 724 KNDIPVIVDSCIAFV-TQYGLGCEGIYRKNGDPLHISRLLESLRKDARSVKLREGEHQVEDVTDVLKRFLRDLDDPLFTK 802 (1186)
T ss_pred CCCCcEehHHHHHHH-HHhCccceeeeccCCchHHHHHHHHHHhhccceeeccCCcchHHHHHHHHHHHHHhCCccccch
Confidence 458999999999998 89999999999999999999999999988742 245789999999999999999999999
Q ss_pred CCHHHHHhhcc-------HHHHHHHHHhCChhhHHHHHHHHHHHHHhhhccccCCCChhhhHHhhhcccccCCChhHHHH
Q 010347 249 LSPEQVMQCQT-------EEDCLQLVRLLPPTESALLDWAINLMADVVQQENLNKMNARNVAMVFAPNMTQMADPLTALM 321 (512)
Q Consensus 249 ~l~e~~~~~~~-------~e~~~~Ll~~LP~~Nr~lL~~Li~fL~~V~~~s~~NKMta~NLAiVFaPnLlr~~d~~~~l~ 321 (512)
.+|..|+++.. .+.+.++|..||..||+||+.||.||++|..+++.|+|+++|||.||||+||+... ++
T Consensus 803 ~~~~~w~eaae~~d~~Er~~rY~~lI~~lp~VnRaTLkalIgHLy~Vqk~s~~N~mnvhNLAlVFa~sLFqTdg-qd--- 878 (1186)
T KOG1117|consen 803 ELYPYWIEAAETQDDKERIKRYGALIRSLPGVNRATLKALIGHLYRVQKCSEINQMNVHNLALVFAPSLFQTDG-QD--- 878 (1186)
T ss_pred hhhhhHHHhhhccchHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhhheecCC-Cc---
Confidence 99999998643 33467899999999999999999999999999999999999999999999998743 11
Q ss_pred HHHHHHHHHHHHHHHHHhhccccccc
Q 010347 322 YAVQVMNFLKMLILRTLREREDSVVE 347 (512)
Q Consensus 322 ~~~~v~~~l~~LI~~~L~e~~~~if~ 347 (512)
.+.+++++.||.+| ..+|+
T Consensus 879 --ehevnVledLingY-----vvVF~ 897 (1186)
T KOG1117|consen 879 --EHEVNVLEDLINGY-----VVVFE 897 (1186)
T ss_pred --hhhhhHHHHHhcCc-----eEEEE
Confidence 15567777777544 56664
No 50
>KOG3564 consensus GTPase-activating protein [General function prediction only]
Probab=99.89 E-value=1.1e-22 Score=212.31 Aligned_cols=166 Identities=22% Similarity=0.318 Sum_probs=137.7
Q ss_pred CCCCHHHHHHHHHHHhcCCCCcCCceecCCCchhHHHHHHHHhcCCC---CCCCChhhhHHHHHHHHHhCCCCCCCCCCH
Q 010347 175 NSVPTILLLMQRHLYGQGGLQAEGIFRINGENSQEEYVRDQLNRGVI---PDGIDIHCLAGLIKAWFRELPAGVLDPLSP 251 (512)
Q Consensus 175 ~~VP~il~~~i~~L~e~~Gl~~EGIFRvsG~~~~v~~Lr~~ln~g~~---~~~~Dvh~vAsLLK~fLReLPePLL~~~l~ 251 (512)
-.||.+|..|+..| |.+||..|||||++|....++.|+++|-+|.- ....|+|+++++||.|||.|.+||||....
T Consensus 360 PMIPalVVHCVneI-EaRGLteeGLYRvsg~~rtvk~lkekfLR~Kt~p~~g~~Dihvic~~lKdFLR~LkePLip~~~~ 438 (604)
T KOG3564|consen 360 PMIPALVVHCVNEI-EARGLTEEGLYRVSGCDRTVKRLKEKFLRGKTTPHLGNDDIHVICCCLKDFLRNLKEPLIPFRLR 438 (604)
T ss_pred ccchHHHHHHHHHH-HHccccccceeeccccHHHHHHHHHHHhccCCCCccCCcchhHHHHHHHHHHHhcccccccchHH
Confidence 37999999999998 89999999999999999999999999999973 356899999999999999999999999999
Q ss_pred HHHHhhccH-------HHHHHHHHhCChhhHHHHHHHHHHHHHhhhccccCCCChhhhHHhhhcccccC----CChhHHH
Q 010347 252 EQVMQCQTE-------EDCLQLVRLLPPTESALLDWAINLMADVVQQENLNKMNARNVAMVFAPNMTQM----ADPLTAL 320 (512)
Q Consensus 252 e~~~~~~~~-------e~~~~Ll~~LP~~Nr~lL~~Li~fL~~V~~~s~~NKMta~NLAiVFaPnLlr~----~d~~~~l 320 (512)
.+|+++... ..+.+.|..||.+||.+|.|||-|+++|++ +..|||+..|||.+|||+++-- +|....+
T Consensus 439 rdf~eAa~~tD~dn~~~aly~aV~ELpQAnRDTLAfLmiH~qrIAQ-sp~~kM~v~nlA~ifgPtivgh~vp~pd~~~~l 517 (604)
T KOG3564|consen 439 RDFMEAAEITDEDNSILALYQAVGELPQANRDTLAFLMIHWQRIAQ-SPRVKMNVANLARIFGPTIVGHAVPNPDQVTML 517 (604)
T ss_pred HHHHHHhcCCCchhHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHh-CCcccccHHHHHHHhcchhhccCCCCccHhHHH
Confidence 999987532 235677899999999999999999999888 7889999999999999999863 3333333
Q ss_pred H---HHHHHHHHHHHHHHHHHhhcc
Q 010347 321 M---YAVQVMNFLKMLILRTLRERE 342 (512)
Q Consensus 321 ~---~~~~v~~~l~~LI~~~L~e~~ 342 (512)
. .+.++|+.+-.|=..||..+-
T Consensus 518 ~dv~~q~rvmkaLlelp~~yWsqfl 542 (604)
T KOG3564|consen 518 QDVKTQPRVMKALLELPLEYWSQFL 542 (604)
T ss_pred HhhhhhHHHHHHHHhCCHHHHHHhh
Confidence 3 334455544444456665443
No 51
>KOG4724 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]
Probab=99.80 E-value=2.3e-20 Score=201.18 Aligned_cols=173 Identities=18% Similarity=0.154 Sum_probs=146.2
Q ss_pred CCCcccccChhhhhhhcCCCCCCCCHHHHHHHHHHHhcCCCCcCCceecCCCchhHHHHHHHHhcCCCC--CCCChhhhH
Q 010347 154 ASATVFGVSTESMQLSFDSRGNSVPTILLLMQRHLYGQGGLQAEGIFRINGENSQEEYVRDQLNRGVIP--DGIDIHCLA 231 (512)
Q Consensus 154 ~~~~vFGv~Le~l~~~~~~~g~~VP~il~~~i~~L~e~~Gl~~EGIFRvsG~~~~v~~Lr~~ln~g~~~--~~~Dvh~vA 231 (512)
+...+||.||..+|.. . .+|..+..++-++ ...|..++||||..++.+.+++||+.+|+|+.. +...+|++|
T Consensus 78 ~~~~Lfg~pl~nic~~----~-~lp~p~~d~l~~l-c~kgp~t~giFr~~anek~~relKe~lnsgv~v~l~~~~i~v~a 151 (741)
T KOG4724|consen 78 ADSFLFGWPLTNICVH----F-RLPEPDEDFLLLL-CCKGPCTRGIFRTIANEKNVRELKETLNSGVDVGLKSGEIVVDA 151 (741)
T ss_pred CCccccCccchhhccc----C-CCCChHHHHHHHH-hhcCcccHHHHHHHHHHHHHHHHHHHhcccccccccccceEEee
Confidence 5789999999998742 2 2888888887655 889999999999999999999999999999754 668899999
Q ss_pred HHHHHHHHhCCCCCCCCCCHHHHHhh-------ccHHHHHHHHHhCChhhHHHHHHHHHHHHHhhhccccCCCChhhhHH
Q 010347 232 GLIKAWFRELPAGVLDPLSPEQVMQC-------QTEEDCLQLVRLLPPTESALLDWAINLMADVVQQENLNKMNARNVAM 304 (512)
Q Consensus 232 sLLK~fLReLPePLL~~~l~e~~~~~-------~~~e~~~~Ll~~LP~~Nr~lL~~Li~fL~~V~~~s~~NKMta~NLAi 304 (512)
+++|.|||.+|.-+|.+++|+.|+-. ..+++++++..+||..|..+|+||...| .|..++.+|.|+..|||+
T Consensus 152 ~v~kdflr~ip~~~lSsdl~~hw~~~~~~~~~e~~i~~i~r~~d~Lpr~n~~lL~~l~~vl-~i~~~S~~n~m~~~nla~ 230 (741)
T KOG4724|consen 152 AVDKDFLRTIPQLTLSSDLNSHWQLQGPENVYEAIISEIERQGDRLPRSNKQLLDTLPIVL-CILILSTINSMSGPNLAQ 230 (741)
T ss_pred hhhhchhhhchhhhhccccHHHHhhccccccHHHHHHHHHHHHhhCCchHHHHHHHhHHHH-HHHHhhhhccccCccHHH
Confidence 99999999999999999999999854 3456788999999999999999999999 899999999999999999
Q ss_pred hhhcccccCCChhHHHHHHHHHHHHHHHHH
Q 010347 305 VFAPNMTQMADPLTALMYAVQVMNFLKMLI 334 (512)
Q Consensus 305 VFaPnLlr~~d~~~~l~~~~~v~~~l~~LI 334 (512)
|++|++++....... .......+-+..|+
T Consensus 231 cv~p~~l~~~~~~s~-e~~k~ln~kv~~l~ 259 (741)
T KOG4724|consen 231 CVNPIKLKVLTRTSS-EFGKGLNGKVPPLP 259 (741)
T ss_pred HhcchhcccccccCh-hhhccccCCCCCce
Confidence 999999998543222 44444444444333
No 52
>KOG1452 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]
Probab=99.75 E-value=3.8e-18 Score=171.34 Aligned_cols=155 Identities=18% Similarity=0.269 Sum_probs=135.0
Q ss_pred CCcccccChhhhhhhcCCCCCCCCHHHHHHHHHHHhcCCCCcCCceecCCCchhHHHHHHHHhcCCC-C-----CCCChh
Q 010347 155 SATVFGVSTESMQLSFDSRGNSVPTILLLMQRHLYGQGGLQAEGIFRINGENSQEEYVRDQLNRGVI-P-----DGIDIH 228 (512)
Q Consensus 155 ~~~vFGv~Le~l~~~~~~~g~~VP~il~~~i~~L~e~~Gl~~EGIFRvsG~~~~v~~Lr~~ln~g~~-~-----~~~Dvh 228 (512)
-..+||.+|+.+. ++....-|+++..|++.| |++|++.-|+|++.|+..+-+.||+.|+.... . .--|.+
T Consensus 181 lrgvfG~~L~~lV---~RE~~~~PIvlrR~~~Ei-EkRGvD~~Gly~lCGS~~KKkmLR~~fe~n~r~~el~~E~iPD~n 256 (442)
T KOG1452|consen 181 LRGVFGISLSRLV---QREPESPPIVLRRLYAEI-EKRGVDYSGLYSLCGSVEKKKMLRRDFEPNGRDFELGAESIPDYN 256 (442)
T ss_pred cccccchhhHhHh---hcCCCCCchHHHHHHHHH-HhcccccccceeeechhhHHHHHHHHhccCCcccccccccCCCcc
Confidence 4679999999985 344557899999999998 89999999999999999999999999987531 1 226899
Q ss_pred hhHHHHHHHHHhCCCCCCCCCCHHHHHhhc----------cHHHHHHHHHhCChhhHHHHHHHHHHHHHhhhccccCCCC
Q 010347 229 CLAGLIKAWFRELPAGVLDPLSPEQVMQCQ----------TEEDCLQLVRLLPPTESALLDWAINLMADVVQQENLNKMN 298 (512)
Q Consensus 229 ~vAsLLK~fLReLPePLL~~~l~e~~~~~~----------~~e~~~~Ll~~LP~~Nr~lL~~Li~fL~~V~~~s~~NKMt 298 (512)
+|++++|.|||||||||++...++..+++. +...+..+|..|+..++..|.+++.||..|..++..|+|+
T Consensus 257 vItg~~kD~lrElpEPl~t~~~f~m~~dA~sV~LP~dp~~N~kl~l~iidcL~r~~~~~l~~~LDHLS~Vl~sS~~N~lt 336 (442)
T KOG1452|consen 257 VITGDSKDELRELPEPLVTGQDFEMDFDAASVALPFDPHLNLKLFLAIIDCLERELSKQLNVCLDHLSTVLCSSPHNGLT 336 (442)
T ss_pred eeecccHhHHHhCCCccccchhhhhhhhhhhhcCCCCccccHHHHHHHHHHHHHHhhhhHhHHHhhhhHheecCCcCCcC
Confidence 999999999999999999998888776652 3345678899999999999999999999999999999999
Q ss_pred hhhhHHhhhcccccC
Q 010347 299 ARNVAMVFAPNMTQM 313 (512)
Q Consensus 299 a~NLAiVFaPnLlr~ 313 (512)
+..||.||||-||..
T Consensus 337 ~~~Ls~i~~P~L~~~ 351 (442)
T KOG1452|consen 337 PTRLSLIFAPLLFFC 351 (442)
T ss_pred HHHHHHHhhhhHHHh
Confidence 999999999999754
No 53
>KOG4271 consensus Rho-GTPase activating protein [Signal transduction mechanisms]
Probab=99.67 E-value=1e-16 Score=177.90 Aligned_cols=153 Identities=17% Similarity=0.289 Sum_probs=133.7
Q ss_pred CCCcccccChhhhhhhcCCCCCCCCHHHHHHHHHHHhcCCCCcCCceecCCCchhHHHHHHHHhcCC--CC--CCCChhh
Q 010347 154 ASATVFGVSTESMQLSFDSRGNSVPTILLLMQRHLYGQGGLQAEGIFRINGENSQEEYVRDQLNRGV--IP--DGIDIHC 229 (512)
Q Consensus 154 ~~~~vFGv~Le~l~~~~~~~g~~VP~il~~~i~~L~e~~Gl~~EGIFRvsG~~~~v~~Lr~~ln~g~--~~--~~~Dvh~ 229 (512)
.....||++|..+. .....||.++.+|++|+ +..|+.+|||||++|+..+.+.++.+|.... .. -+..+|+
T Consensus 913 ~~s~~~~~~l~~~~----t~~k~ip~~~ekc~sfi-edtg~~te~lyrv~gnkT~~eelrkqf~n~~~~dl~s~d~~v~~ 987 (1100)
T KOG4271|consen 913 WESNYFLTPLQDAV----TSEKPIPIFLEKCKSFI-EDTGLSTEGLYRVSGNKTDLEELRKQFLNDHNFDLSSMDTTVNV 987 (1100)
T ss_pred hhhhccCCcccccc----cCCcccchHHHHHHHHH-HhccchhhhheecCCCCccHHHHHHHHHhhcccccccccccccc
Confidence 45679999998763 34458999999999998 7889999999999999999999999998732 12 3467999
Q ss_pred hHHHHHHHHHhCCCCCCCCCCHHHHHhhcc-------HHHHHHHHHhCChhhHHHHHHHHHHHHHhhhccccCCCChhhh
Q 010347 230 LAGLIKAWFRELPAGVLDPLSPEQVMQCQT-------EEDCLQLVRLLPPTESALLDWAINLMADVVQQENLNKMNARNV 302 (512)
Q Consensus 230 vAsLLK~fLReLPePLL~~~l~e~~~~~~~-------~e~~~~Ll~~LP~~Nr~lL~~Li~fL~~V~~~s~~NKMta~NL 302 (512)
+|+.+|.||..||+||+++.+...|.++.. ...++..+..||+.|+.+|+|++.||.+|+....+|.|+..||
T Consensus 988 vagAlksffa~Lpeplipys~h~~~~e~~kI~D~~rklhglr~~~a~l~~~n~dvfry~ithL~kvs~~~k~~l~t~~~~ 1067 (1100)
T KOG4271|consen 988 VAGALKSFFACLPEPLIPYSYHPRLKEAMKISDRGRKLHGLREASAKLHPSNQDVFRYVITHLNKVSCSPKTNLMTNNNL 1067 (1100)
T ss_pred ccCcchhhhhhCCCcccCccCCcchhhhhhcccchhhccchhhHhhhcCchHHHHHHHHHHHHhhhcccccccccccccc
Confidence 999999999999999999998888877543 2346889999999999999999999999999999999999999
Q ss_pred HHhhhcccc
Q 010347 303 AMVFAPNMT 311 (512)
Q Consensus 303 AiVFaPnLl 311 (512)
.+||++.|+
T Consensus 1068 ~i~~~~~~~ 1076 (1100)
T KOG4271|consen 1068 SICFPTLLM 1076 (1100)
T ss_pred cccccchHH
Confidence 999999875
No 54
>cd04401 RhoGAP_fMSB1 RhoGAP_fMSB1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal MSB1-like proteins. Msb1 was originally identified as a multicopy suppressor of temperature sensitive cdc42 mutation. Msb1 is a positive regulator of the Pkc1p-MAPK pathway and 1,3-beta-glucan synthesis, both pathways involve Rho1 regulation. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=99.59 E-value=1.9e-14 Score=139.10 Aligned_cols=137 Identities=15% Similarity=0.165 Sum_probs=119.0
Q ss_pred HHHHHHHHHHHhcCCCCcCCc---eecCCCchhHHHH-HHHHhcCC---C--------CCCCChhhhHHHHHHHHHhCCC
Q 010347 179 TILLLMQRHLYGQGGLQAEGI---FRINGENSQEEYV-RDQLNRGV---I--------PDGIDIHCLAGLIKAWFRELPA 243 (512)
Q Consensus 179 ~il~~~i~~L~e~~Gl~~EGI---FRvsG~~~~v~~L-r~~ln~g~---~--------~~~~Dvh~vAsLLK~fLReLPe 243 (512)
.++..|.+.| +.+|+++++| ||..++...++.+ +..|+.+. . ....|+|+++++||.|+|.||.
T Consensus 8 ~l~~~~t~eL-k~rg~~t~~l~~pfrp~~~~~~~~~fi~~~f~~~~~~~~~~~~~~~e~~~~d~~~l~~~LK~~~~rLP~ 86 (198)
T cd04401 8 GLIHNITEEL-KSRGLDTPLLFLPFRPELSPDKVRSLINSFFPSQNGQLQGTAELLDELRYADPHTLILVLKWIWSRLPG 86 (198)
T ss_pred HHHHHHHHHH-HhcccCcchhhcccCCCCCHHHHHHHHHHHCCCcCCcccchHHHHHHHhccChHHHHHHHHHHHHHCCC
Confidence 5778888888 7899999999 9999999999887 55666552 1 2348999999999999999999
Q ss_pred CCCCC-CCHHHHHhhcc-----HHHHHHHHHhC--ChhhHHHHHHHHHHHHHhhhccccCCCChhhhHHhhhcccccCCC
Q 010347 244 GVLDP-LSPEQVMQCQT-----EEDCLQLVRLL--PPTESALLDWAINLMADVVQQENLNKMNARNVAMVFAPNMTQMAD 315 (512)
Q Consensus 244 PLL~~-~l~e~~~~~~~-----~e~~~~Ll~~L--P~~Nr~lL~~Li~fL~~V~~~s~~NKMta~NLAiVFaPnLlr~~d 315 (512)
++++. +.|+.|....+ .+....++..+ |+.|+.++..++.+|..|+.|+..|+|+..||+.+|||.+|...+
T Consensus 87 ~~v~~~~~Y~~F~~~E~~~~~p~~aF~~~l~~~~~~~a~~~il~~ffdlL~~Iaa~s~~N~ms~~kLs~~fg~waF~~~~ 166 (198)
T cd04401 87 SKVIWWEVYEEFKARERRSNYPADAFLDLLPQCLSSPAHASILYDFFDLLSSIAAHSSVNGMSGRKLSKMAGPWAFGKPT 166 (198)
T ss_pred CccCCHHHHHHHHHHHHhcCCcHHHHHHHHhhccCChhhHHHHHHHHHHHHHHHHhcCccCCcHhHHHHHhhHHHcCCCC
Confidence 99999 99999987643 44678888887 889999999999999999999999999999999999999998755
Q ss_pred h
Q 010347 316 P 316 (512)
Q Consensus 316 ~ 316 (512)
.
T Consensus 167 ~ 167 (198)
T cd04401 167 G 167 (198)
T ss_pred c
Confidence 3
No 55
>cd04405 RhoGAP_BRCC3-like RhoGAP_BRCC3-like: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of BRCC3-like proteins. This subgroup also contains two groups of closely related proteins, BRCC3 and DEPDC7, which both contain a C-terminal RhoGAP-like domain and an N-terminal DEP (Disheveled, Egl-10, and Pleckstrin) domain. The function(s) of BRCC3 and DEPDC7 are unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=99.51 E-value=9.8e-14 Score=136.10 Aligned_cols=175 Identities=15% Similarity=0.100 Sum_probs=122.5
Q ss_pred cccccC-hhhhhhhcCCCCCCCCHHHHHHH--HHHHhcCCCC--cCCceecCCCchhHHHHHHHHhcCCCC---C-CCCh
Q 010347 157 TVFGVS-TESMQLSFDSRGNSVPTILLLMQ--RHLYGQGGLQ--AEGIFRINGENSQEEYVRDQLNRGVIP---D-GIDI 227 (512)
Q Consensus 157 ~vFGv~-Le~l~~~~~~~g~~VP~il~~~i--~~L~e~~Gl~--~EGIFRvsG~~~~v~~Lr~~ln~g~~~---~-~~Dv 227 (512)
.+||+| |+.+. +.+...|..+.... +++ ..+-++ ..|+||+++....+...++.++...+. + ....
T Consensus 20 ~l~glp~Ld~vl----~~~~~~p~~i~~~~~~~~~-~~~~ldr~vv~~~~ks~~~~Wl~aA~~CLe~~Pd~~~~~~~~~~ 94 (235)
T cd04405 20 QLVGLPLLEELL----DPALVNPKHISYNMDPDVY-TSNYLDREVVKLFSKSQLDHWLLSAMDCLANWPDQLVVDVSRPL 94 (235)
T ss_pred HHcCCccHHHHh----cccCCCCcchhhccccccc-ccccccchhhcccccccCcHHHHHHHHHHHhCCccccccccccc
Confidence 356666 45543 23445565554333 222 233333 479999999999999999999876321 1 1112
Q ss_pred h-----------hhHHHHHHHHHhCCCCCCCCCCHHHHHhh----------ccHHHHHHHHHhCChhhHHHHHHHHHHHH
Q 010347 228 H-----------CLAGLIKAWFRELPAGVLDPLSPEQVMQC----------QTEEDCLQLVRLLPPTESALLDWAINLMA 286 (512)
Q Consensus 228 h-----------~vAsLLK~fLReLPePLL~~~l~e~~~~~----------~~~e~~~~Ll~~LP~~Nr~lL~~Li~fL~ 286 (512)
+ +||.++|+||++|||||||..+|+.+... ...++++.++..||++||..|+.|+.||+
T Consensus 95 y~~~~~~~~~e~dv~~ti~qyf~~LpEPLLT~~l~~~~~~I~~ll~~~~~e~aleAlQl~~lLLP~enRe~Lq~LL~fl~ 174 (235)
T cd04405 95 YSQHDMLSGFKRLLFKTIAKYYGQLKEPLLTFHLFDIFVGILELLGNGKEEVALEALQLCLLLLPPASRRELRRLLRFMA 174 (235)
T ss_pred ccccccccchHHHHHHHHHHHHhcCCCccCcchHHHHHHHHHHHhcCccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 2 89999999999999999999999966543 13455677889999999999999999999
Q ss_pred Hhhhcc-------ccCCCChhhhHHhhhcccccCCChhHHHHHHHHHHHHHHHHHHHHHhhcccccccCC
Q 010347 287 DVVQQE-------NLNKMNARNVAMVFAPNMTQMADPLTALMYAVQVMNFLKMLILRTLREREDSVVEHT 349 (512)
Q Consensus 287 ~V~~~s-------~~NKMta~NLAiVFaPnLlr~~d~~~~l~~~~~v~~~l~~LI~~~L~e~~~~if~~~ 349 (512)
+|++++ ..|+| |++..|+|.++++.+-. ..+. ..++-|++++...||.-+
T Consensus 175 ~va~~~~~~L~~~~~nR~---~v~~~Fs~~ii~~~~l~-----~~~~-----~~LV~Fmmd~~~~ifkvP 231 (235)
T cd04405 175 RAAKNDMPRLHKEIENRM---LVKQTFSRAILCSKDLD-----EGLA-----DLLVLFLMDHHQDIFKVP 231 (235)
T ss_pred HHHhcCccccccccchHH---HHHHHhhhHhcCccccC-----HHHH-----HHHHHHHHHcchhhhcCC
Confidence 999995 24666 99999999999987422 1112 233445556667777543
No 56
>KOG4370 consensus Ral-GTPase effector RLIP76 [Signal transduction mechanisms]
Probab=99.11 E-value=1.1e-10 Score=121.63 Aligned_cols=137 Identities=20% Similarity=0.350 Sum_probs=113.1
Q ss_pred CCCCCCHHHHHHHHHHHhcCCCCcCCceecCCCchhHHHHHHHHhcCCC-------------------------------
Q 010347 173 RGNSVPTILLLMQRHLYGQGGLQAEGIFRINGENSQEEYVRDQLNRGVI------------------------------- 221 (512)
Q Consensus 173 ~g~~VP~il~~~i~~L~e~~Gl~~EGIFRvsG~~~~v~~Lr~~ln~g~~------------------------------- 221 (512)
++...|.+....+.+. +.+|+.+|||+|..+..++.++++..-+.|..
T Consensus 67 d~~~~~~~f~~~~~~~-e~~~~fte~~s~~~~eksr~~e~k~k~kk~~k~~~aD~~~~~~~~k~~~~~i~Epvvpi~~p~ 145 (514)
T KOG4370|consen 67 DGIPLPSFFRYAIDFV-EENGLFTEGISRLSPEKSRLDELKRKAKKGEKMIFADAHDAAGLIKRFLRQIPEPVVPIEFPS 145 (514)
T ss_pred CCCcCcccchhhhhhh-hccccccccccccCcccchhHHHHHhhhhhhhhhHHHHHHHHhHHHHhhhccCCccccccchH
Confidence 3556777777788876 88999999999999999877777655443210
Q ss_pred ------------CCCCChhhhHHHHHHHHHhCCCCCCCCCCHHHHHhhc-------cHHHHHHHHHhCChhhHHHHHHHH
Q 010347 222 ------------PDGIDIHCLAGLIKAWFRELPAGVLDPLSPEQVMQCQ-------TEEDCLQLVRLLPPTESALLDWAI 282 (512)
Q Consensus 222 ------------~~~~Dvh~vAsLLK~fLReLPePLL~~~l~e~~~~~~-------~~e~~~~Ll~~LP~~Nr~lL~~Li 282 (512)
.+.+.+..||+|||.|||+||++||+.++...|..+. ....++.++..||..||.++.||+
T Consensus 146 V~r~Ci~e~~~~~~~l~p~tvcSllk~~lr~lpenlLT~el~~rFeev~~h~~~t~~q~efq~llk~Lp~cNyll~swl~ 225 (514)
T KOG4370|consen 146 VARSCIREGLATTTQLTPKTVCSLLKSRLRRLPENLLTVELKTRFEEVFLHAQHTMGQNEFQFLLKILPKCNYLLYSWLN 225 (514)
T ss_pred HHHHHhhccccchhhcCchhHHHHHHHHHhhcchhhHHHHHHHHHHHHHccchhhHHHHHHHHHHHhccccchHHHHHHH
Confidence 1235688999999999999999999998887776542 334578899999999999999999
Q ss_pred HHHHHhhhccccCCCChhhhHHhhhccc
Q 010347 283 NLMADVVQQENLNKMNARNVAMVFAPNM 310 (512)
Q Consensus 283 ~fL~~V~~~s~~NKMta~NLAiVFaPnL 310 (512)
-|+-.|.+.+-.|||+..||+|+..|++
T Consensus 226 lH~d~vi~~e~~~Kln~q~i~i~lspt~ 253 (514)
T KOG4370|consen 226 LHKDKVIEEEYCLKLNKQQIFINLSPTE 253 (514)
T ss_pred HHHHHHHHHHHHhhcchhheeeecchHH
Confidence 9999999999999999999999999986
No 57
>KOG3565 consensus Cdc42-interacting protein CIP4 [Cytoskeleton]
Probab=99.05 E-value=1.5e-10 Score=129.02 Aligned_cols=138 Identities=25% Similarity=0.374 Sum_probs=121.7
Q ss_pred CCCCCHHHHHHHHHHHhcCCCCcCCcee-cCCCchhHHHHHHHHhcCCC----CCCCChhhhHHHHHHHHHhCCCC-CCC
Q 010347 174 GNSVPTILLLMQRHLYGQGGLQAEGIFR-INGENSQEEYVRDQLNRGVI----PDGIDIHCLAGLIKAWFRELPAG-VLD 247 (512)
Q Consensus 174 g~~VP~il~~~i~~L~e~~Gl~~EGIFR-vsG~~~~v~~Lr~~ln~g~~----~~~~Dvh~vAsLLK~fLReLPeP-LL~ 247 (512)
+..||.++..|+.++ +.+|+..+|||| ++|....+...+.++.+|.. ..+.+... |.++|.|+|.|.+| +|+
T Consensus 215 ~q~iP~i~d~~~~l~-~~~~l~~~~i~~k~s~~e~~v~~~~~k~~~g~~~~~~~~~~~~dS-a~vlk~~~~~le~P~~f~ 292 (640)
T KOG3565|consen 215 FQFIPLIVDSLQRLE-ERRGLRLEGILRKVSGSESSVNDIISKCERGMRLAVGLNDPDLDS-AGVLKLYFRGLEEPADFP 292 (640)
T ss_pred cccccHHHHHHHHHH-HHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHhhhhccCcchhH-HHHHHHHHccCCCcccCc
Confidence 568999999999976 789999999999 99999999999999998831 13445555 99999999999999 999
Q ss_pred CCCHHHHHhhccH-------HHHHHHHHhCChhhHHHHHHHHHHHHHhhhccccCCCChhhhHHhhhcccccC
Q 010347 248 PLSPEQVMQCQTE-------EDCLQLVRLLPPTESALLDWAINLMADVVQQENLNKMNARNVAMVFAPNMTQM 313 (512)
Q Consensus 248 ~~l~e~~~~~~~~-------e~~~~Ll~~LP~~Nr~lL~~Li~fL~~V~~~s~~NKMta~NLAiVFaPnLlr~ 313 (512)
++.+..++.+... ..+..++..||..+..++.+|..|+.+.++.+..|.|+..|+|+||||.++..
T Consensus 293 ~e~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~l~~f~~~l~~~~~~~~~~~~n~~~~~g~~~~~~ 365 (640)
T KOG3565|consen 293 FEDFGQPHDCAARDNLLSRALHVRKLLKSLPNQVGIELRKLFAFLSKLSQLSDENMMDPYNLAICFGPTLEPV 365 (640)
T ss_pred cccccchhhhhhhcCchhhhhhhhhhhhccccHHHHHHHHHHHhhhhhhhhccccccCccccccccccccccC
Confidence 9999999987543 34567899999999999999999999999999999999999999999999654
No 58
>PF08101 DUF1708: Domain of unknown function (DUF1708); InterPro: IPR012965 This is a fungal domain of unknown function, though the yeast protein MSB1(P21339 from SWISSPROT) which contains this domain is thought to play a role in bud formation [].
Probab=98.07 E-value=4.2e-05 Score=82.11 Aligned_cols=138 Identities=18% Similarity=0.238 Sum_probs=107.0
Q ss_pred CCHHHHHHHHHHHhcCCCCcCCce---ecCCCchhHHHHHHH-HhcCCC------------CCCCChhhhHHHHHHHHHh
Q 010347 177 VPTILLLMQRHLYGQGGLQAEGIF---RINGENSQEEYVRDQ-LNRGVI------------PDGIDIHCLAGLIKAWFRE 240 (512)
Q Consensus 177 VP~il~~~i~~L~e~~Gl~~EGIF---RvsG~~~~v~~Lr~~-ln~g~~------------~~~~Dvh~vAsLLK~fLRe 240 (512)
|=.+|..|.+.| +.+|+++++|| |-.-+...++.+... |..+.. ....++|+++++||-.+..
T Consensus 8 v~~li~~~t~el-K~rgldtp~lllpfrp~~~~~~~~~fi~~~f~~~~~~~~~~~~~~~~el~~~~~~~L~~~LKw~w~R 86 (420)
T PF08101_consen 8 VKDLIHACTEEL-KSRGLDTPFLLLPFRPDSDPSALRRFIRSFFPQGNGSPVLDGEALIQELRFTSPHTLISVLKWIWSR 86 (420)
T ss_pred HHHHHHHHHHHH-HhccCCCchhccCCCCCCCHHHHHHHHHHhCCCccCcccccHHHHHHHHhcCCchHHHHHHHHHHHH
Confidence 335677777777 78999999998 555556666554443 343321 1358999999999999999
Q ss_pred CCCCCCCCCCHHHHHhhccH-----HHHHHHH-HhCC-hhhHHHHHHHHHHHHHhhhccccCCCChhhhHHhhhcccccC
Q 010347 241 LPAGVLDPLSPEQVMQCQTE-----EDCLQLV-RLLP-PTESALLDWAINLMADVVQQENLNKMNARNVAMVFAPNMTQM 313 (512)
Q Consensus 241 LPePLL~~~l~e~~~~~~~~-----e~~~~Ll-~~LP-~~Nr~lL~~Li~fL~~V~~~s~~NKMta~NLAiVFaPnLlr~ 313 (512)
||..+++.+.|..|....+. .....++ ..|| +.+..++.-++.+|..|+.|+..|+|+..-|+-.+|+=+|-.
T Consensus 87 Lp~gvVgW~~Y~~Fk~~E~~~~yp~~AF~~~lp~~l~s~a~~~Iv~dFfdLL~sIaa~s~~NglsgrKlsrm~g~WaF~~ 166 (420)
T PF08101_consen 87 LPGGVVGWDSYEEFKRREREAGYPRDAFLTFLPQCLPSPAHASIVYDFFDLLSSIAAHSKKNGLSGRKLSRMAGIWAFGH 166 (420)
T ss_pred cCCCccccHHHHHHHHHHhhcCCChHHHHHhccccCCChhHHHHHHHHHHHHHHHHhcCcccCCCHHHHHHHHHHHHCCC
Confidence 99999999999999866543 3345555 5565 455679999999999999999999999999999999988865
Q ss_pred CC
Q 010347 314 AD 315 (512)
Q Consensus 314 ~d 315 (512)
.+
T Consensus 167 ~~ 168 (420)
T PF08101_consen 167 PD 168 (420)
T ss_pred CC
Confidence 43
No 59
>KOG4724 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]
Probab=97.77 E-value=1.3e-05 Score=88.31 Aligned_cols=156 Identities=13% Similarity=0.128 Sum_probs=115.7
Q ss_pred CCcccccChhhhhhhcCCCCCCCCHHHHHHHHHHHhcCCCCcCCceecCCCchhHHH----HHHHHhc-CC--CCCCCCh
Q 010347 155 SATVFGVSTESMQLSFDSRGNSVPTILLLMQRHLYGQGGLQAEGIFRINGENSQEEY----VRDQLNR-GV--IPDGIDI 227 (512)
Q Consensus 155 ~~~vFGv~Le~l~~~~~~~g~~VP~il~~~i~~L~e~~Gl~~EGIFRvsG~~~~v~~----Lr~~ln~-g~--~~~~~Dv 227 (512)
....||+||+..+ .++...|..+..... |++..+..++++||..-...-+.+ ....++. |. .++...+
T Consensus 413 ~kv~fdaPlS~~c----~d~gk~prPlq~~~t-ll~kknp~tpn~fprt~~~Alv~ks~s~~s~dd~s~gr~vdv~sspv 487 (741)
T KOG4724|consen 413 AKVPFDAPLSVFC----ADQGKTPRPLQIQST-LLKKKNPATPNVFPRTNDEALVLKAFSSSSLDDSSDGRPVDVPSSPV 487 (741)
T ss_pred hhCcCCCchhhcc----cccCCCCCChhhhhH-HHHhcCCCCCccCCCccchhhhhhcccccchhhhccCCcccCCCCCc
Confidence 5778999999876 344456666554444 447788999999998443333222 2222222 33 3456789
Q ss_pred hhhHHHHHHHHHhCCCCCCCCCCHHHHHhhc-------cHHHHHH--------HHHhCChhhHHHHHHHHHHHHHhhhcc
Q 010347 228 HCLAGLIKAWFRELPAGVLDPLSPEQVMQCQ-------TEEDCLQ--------LVRLLPPTESALLDWAINLMADVVQQE 292 (512)
Q Consensus 228 h~vAsLLK~fLReLPePLL~~~l~e~~~~~~-------~~e~~~~--------Ll~~LP~~Nr~lL~~Li~fL~~V~~~s 292 (512)
|.+|+++|.|+|++|..++..+.+.+++++. +.+.++. ...+.|..++.+....+.-...+..++
T Consensus 488 ~taasv~KdfnRKtpRgi~sr~ihke~~ea~~lq~EedrtEaLk~~~gks~~fv~~~~Prg~s~~~shsvf~~~i~S~ns 567 (741)
T KOG4724|consen 488 HTAASVHKDFNRKTPRGIPSREIHKESMEATFLQHEEDRTEALKAGSGKSQDFVRDHVPRGGSNVRKHSVFAGRIVSENS 567 (741)
T ss_pred hHHHHHHHHhhhhcCCCccchHHHHHhhhhhhccchHHHHHHHHhhcCCcccccccCCCCCcccccccccccceeccccc
Confidence 9999999999999999999999999998763 3344555 556788888888888877778888999
Q ss_pred ccCCCChhhhHHhhhcccccCCC
Q 010347 293 NLNKMNARNVAMVFAPNMTQMAD 315 (512)
Q Consensus 293 ~~NKMta~NLAiVFaPnLlr~~d 315 (512)
..+.|+..|++.|..|+++.-.+
T Consensus 568 e~~s~dsSn~~~csrpn~~tvd~ 590 (741)
T KOG4724|consen 568 EETSNDSSNPGFCSRPNALTVDD 590 (741)
T ss_pred ccccccccccCCCCCccccchhh
Confidence 99999999999999999977544
No 60
>KOG1453 consensus Chimaerin and related Rho GTPase activating proteins [Signal transduction mechanisms]
Probab=96.26 E-value=0.0037 Score=73.62 Aligned_cols=186 Identities=17% Similarity=0.203 Sum_probs=132.1
Q ss_pred ccccChhhhhhhcCCCCCCCCHHHHH-HHHHHHhcCCCCcCCceecCCCchhHHHHHHHHhcCC-C-------CC-CCCh
Q 010347 158 VFGVSTESMQLSFDSRGNSVPTILLL-MQRHLYGQGGLQAEGIFRINGENSQEEYVRDQLNRGV-I-------PD-GIDI 227 (512)
Q Consensus 158 vFGv~Le~l~~~~~~~g~~VP~il~~-~i~~L~e~~Gl~~EGIFRvsG~~~~v~~Lr~~ln~g~-~-------~~-~~Dv 227 (512)
++|+++..+... .......|.++.. +.+.. ...|....|+||..+....++..+..++... . .. ..++
T Consensus 462 ~~~~~~~~~~~~-~~~~~~~~~~vs~~~~~e~-~~~g~~s~~l~r~~~~~~~~~~~~~~~d~~~~~k~~~~~~~~~~~~~ 539 (918)
T KOG1453|consen 462 ILGTDLTTLSVN-KDLNSNRPLSVSRSLERES-RSPGALSRGLFRVSGFSSTIESKKNAFDRKGQSKKDASPNVHKSKEV 539 (918)
T ss_pred ccccCccccccc-hhhhcccCcccccchhccc-CCCCcccccccccCCccccccchhhccCccccchhccCCCccccccc
Confidence 888888776221 1223356777777 55544 7789999999999999999999999988743 1 11 3456
Q ss_pred hhhHHHHHHHHHhC--CCCCCCCCCHHHHHhhc-----------------------cH-------HHHHHHHH----hCC
Q 010347 228 HCLAGLIKAWFREL--PAGVLDPLSPEQVMQCQ-----------------------TE-------EDCLQLVR----LLP 271 (512)
Q Consensus 228 h~vAsLLK~fLReL--PePLL~~~l~e~~~~~~-----------------------~~-------e~~~~Ll~----~LP 271 (512)
....+.++.|+|.+ |.+......|..++... .. ..+.++.. .+|
T Consensus 540 ~~~sg~~~~~~r~~~~P~~c~~c~~~~~~~~~~c~~c~~~chkkc~~~~~~~~~~~~l~~~~~fG~~l~~~~~~e~~~vP 619 (918)
T KOG1453|consen 540 NLHSGALKHYLRSLRKPAPCRTCETYSWFMELECELCRLVCHKKCLEALKSLCGHERLPGRPLFGVSLSELARYEPSTVP 619 (918)
T ss_pred hhccCcchhhhhcccCCcccccccccchhhhcccceeeeeccccchhhccccCccccccccccccHHHHHhhccCCCCCC
Confidence 67777999999999 99988888888777310 11 34456666 899
Q ss_pred hhhHHHHHHHHHHHHHhhhccccC-CCCh-hhhHHhhhc----ccccCCChhHHHHHHHHHHHHHHHHHHHHHhhc-ccc
Q 010347 272 PTESALLDWAINLMADVVQQENLN-KMNA-RNVAMVFAP----NMTQMADPLTALMYAVQVMNFLKMLILRTLRER-EDS 344 (512)
Q Consensus 272 ~~Nr~lL~~Li~fL~~V~~~s~~N-KMta-~NLAiVFaP----nLlr~~d~~~~l~~~~~v~~~l~~LI~~~L~e~-~~~ 344 (512)
.....+|.++..|+.++.....+| .|+. .||..+|++ +++...+... .+.-.-.++..|.+.+++.. ++.
T Consensus 620 ~i~~~c~~~ie~~~lr~eGiYRksG~~~~~e~l~~~~e~~~~~v~l~~~dih~---vtsVlK~yLr~Lp~pIi~f~~y~~ 696 (918)
T KOG1453|consen 620 FILKKCLREIEAHLLRVEGIYRKSGSMNQVENLSAVFENGDALVLLSTPDIHA---VTSVLKLYLRKLPEPIIIFNLYDE 696 (918)
T ss_pred HHHHHHHHHHHHhhhhccceeeccccHHHHHHHHHHhcCCccceecCCCChHH---HHHHHHHHHHhccccccccchHHH
Confidence 999999999999999999999888 8888 999999999 4555444322 11222345555666655555 555
Q ss_pred cccC
Q 010347 345 VVEH 348 (512)
Q Consensus 345 if~~ 348 (512)
||..
T Consensus 697 ~~~~ 700 (918)
T KOG1453|consen 697 FLSA 700 (918)
T ss_pred HHhh
Confidence 5543
No 61
>KOG4271 consensus Rho-GTPase activating protein [Signal transduction mechanisms]
Probab=94.16 E-value=0.2 Score=58.19 Aligned_cols=153 Identities=16% Similarity=0.084 Sum_probs=104.0
Q ss_pred CCcccccChhhhhhhcCCCCCCCCHHHHHHHHHHHhcCCCCcCC---ceecCC-CchhHHHHHHHHh-cCC--C--CCCC
Q 010347 155 SATVFGVSTESMQLSFDSRGNSVPTILLLMQRHLYGQGGLQAEG---IFRING-ENSQEEYVRDQLN-RGV--I--PDGI 225 (512)
Q Consensus 155 ~~~vFGv~Le~l~~~~~~~g~~VP~il~~~i~~L~e~~Gl~~EG---IFRvsG-~~~~v~~Lr~~ln-~g~--~--~~~~ 225 (512)
-..+||.+..--...+ ..-|.+..+-+.+| +..|+..|| |-|.++ +...|+.-...|+ .|. + .+..
T Consensus 353 lss~~~rps~g~le~~----d~sp~~~~knL~~l-~~~Gl~~E~~n~I~~qsa~D~~~id~kiyE~s~dgkt~~~v~~~~ 427 (1100)
T KOG4271|consen 353 LSSVLGRPSLGALENS----DGSPNIDEKNLVIL-GKDGLAGEGANEIRRQSADDVYVIDGKIYELSIDGKTRLPVNSFQ 427 (1100)
T ss_pred hhhhhcCcchhhhhhh----cCCcccchhhhhhh-hhcccchhhhHHHHHhcccchhhhhhhhhhcccccccccchhhhc
Confidence 3567777633211112 25688888888876 899999999 999988 5555554444453 443 1 2345
Q ss_pred Chh--hhHHHHH--HHHHhCCCCCCCCCCHHHHHhh---------ccHHH-HHHHHHh--CChhhHH----HHHHHHHHH
Q 010347 226 DIH--CLAGLIK--AWFRELPAGVLDPLSPEQVMQC---------QTEED-CLQLVRL--LPPTESA----LLDWAINLM 285 (512)
Q Consensus 226 Dvh--~vAsLLK--~fLReLPePLL~~~l~e~~~~~---------~~~e~-~~~Ll~~--LP~~Nr~----lL~~Li~fL 285 (512)
+|| .|...++ .-||.++..+.+...+..+..+ .++.. ...++.. .|.+|+. ++..++..+
T Consensus 428 ~ph~s~v~e~Ie~~~~lr~~~~~~~~~~~C~~ld~a~gY~~~~Ne~riss~~~aices~~~p~pnnk~~~d~~LRivm~m 507 (1100)
T KOG4271|consen 428 QPHLSYVGESIEKSHSLRQQGQQIAPKLQCVFLDEASGYGRDINEKRISSVLKAICESRNSPEPNNKDLADLDLRIVMCM 507 (1100)
T ss_pred CcchhHHHhhhhhhhhhhhcccccCCccccccccccccccccccHHHHHHHHHHHHhhcCCCccccchhHHHHHHHHHHH
Confidence 888 5677777 6778888877777666554433 12322 2455555 7887776 777777778
Q ss_pred HHhhhccccCCCChh-hhHHhhhcc-ccc
Q 010347 286 ADVVQQENLNKMNAR-NVAMVFAPN-MTQ 312 (512)
Q Consensus 286 ~~V~~~s~~NKMta~-NLAiVFaPn-Llr 312 (512)
.-+..++..|.|+.. ..|.|.+|- |++
T Consensus 508 ~~g~~~s~~ni~n~~~~s~aCkS~~llL~ 536 (1100)
T KOG4271|consen 508 MCGDPFSADNILNPVLASAACKSPHLLLR 536 (1100)
T ss_pred hcCCchhhhhhcChhhHHHHhcChHHHHh
Confidence 888899999999999 999999994 555
No 62
>KOG1449 consensus Predicted Rho GTPase-activating protein CdGAPr [Signal transduction mechanisms]
Probab=91.50 E-value=0.079 Score=58.58 Aligned_cols=64 Identities=22% Similarity=0.241 Sum_probs=44.6
Q ss_pred HHHHHHhhhccccCCCChhhhHHhhhcccccCCChhHH---------HHHHHHHHHHHHHHHHHHHhhcccccccCC
Q 010347 282 INLMADVVQQENLNKMNARNVAMVFAPNMTQMADPLTA---------LMYAVQVMNFLKMLILRTLREREDSVVEHT 349 (512)
Q Consensus 282 i~fL~~V~~~s~~NKMta~NLAiVFaPnLlr~~d~~~~---------l~~~~~v~~~l~~LI~~~L~e~~~~if~~~ 349 (512)
+.||..|+.+.....|-+.|||+||||||++....... ...++++..++. .++-.+.+.+|.+.
T Consensus 1 ~rHls~va~~~s~tnmhA~Nla~vwapnllrskeies~lcs~~~GdaAf~avq~qsvV~----EfilnhvDvlF~~~ 73 (670)
T KOG1449|consen 1 HRHLSSVALGPSRTNMHAINLAEVWAPNLLRSKEIESSLCSHLWGDAAFSAVQAQSVVS----EFILNHVDVLFLPT 73 (670)
T ss_pred CcchhhhhccchhhHHHHhhHHHhhhhhhHHHHHHHHhhhccccccHHHHHHHhhhhhh----hhcccccceecCCc
Confidence 36899999999999999999999999999997543222 223444444433 33345667777653
No 63
>KOG1449 consensus Predicted Rho GTPase-activating protein CdGAPr [Signal transduction mechanisms]
Probab=85.11 E-value=0.1 Score=57.74 Aligned_cols=177 Identities=14% Similarity=0.092 Sum_probs=99.1
Q ss_pred CCcccccChhhhhhhcCCCCCCCCH-HHHHHHHHHHh--cC-C-CCcCCceecCCCchhHHHHHHHHhcCCCCCCCChhh
Q 010347 155 SATVFGVSTESMQLSFDSRGNSVPT-ILLLMQRHLYG--QG-G-LQAEGIFRINGENSQEEYVRDQLNRGVIPDGIDIHC 229 (512)
Q Consensus 155 ~~~vFGv~Le~l~~~~~~~g~~VP~-il~~~i~~L~e--~~-G-l~~EGIFRvsG~~~~v~~Lr~~ln~g~~~~~~Dvh~ 229 (512)
.+..||.-|..+ +-..|..||. ++..|+..+.. ++ + +..+|.|++..+..... +...+.-.-|+.+
T Consensus 206 ~~~~~gl~ltr~---~~~~G~~lpas~~g~~C~s~~~~~q~~ei~~~~g~l~a~~D~gae~------d~~af~~p~di~v 276 (670)
T KOG1449|consen 206 SNLNCGLVLTRM---EVGLGRGLPASEWGRGCVSHHAVTQHREILDGNGVLSAVEDEGAEV------DGEAFRWPSDIVV 276 (670)
T ss_pred cCccccceecce---eeccccccchhhhccchhccccchhccCCcccCcceeccccccccc------cccccCCccceee
Confidence 345666666554 2244667887 56565553311 11 1 22345555543322111 0011223468889
Q ss_pred hHHHHHHHHHhCCCCCCCCCCHHHHHh-hccHHHHHHHHHhCChhhHHHHHHHHHHHHHhhhccccCCCChhhhHHhhhc
Q 010347 230 LAGLIKAWFRELPAGVLDPLSPEQVMQ-CQTEEDCLQLVRLLPPTESALLDWAINLMADVVQQENLNKMNARNVAMVFAP 308 (512)
Q Consensus 230 vAsLLK~fLReLPePLL~~~l~e~~~~-~~~~e~~~~Ll~~LP~~Nr~lL~~Li~fL~~V~~~s~~NKMta~NLAiVFaP 308 (512)
+.-+++-|+|.+|.|+.. ..|+.=-. ....+...--+...++.|+.+-.+|..||...+.-. .+++|++.|
T Consensus 277 ~S~d~dp~s~Q~~pp~~~-~~~~k~Ds~s~sv~~~~~~~~~~se~~~r~a~~lse~ft~~~~~~-------~s~~I~~~~ 348 (670)
T KOG1449|consen 277 ESWDMDPYSRQLPPPYPK-EAFEKEDSLSESVESLRFSLETMSEAHYRTAKFLSEHFTRLCKSK-------KSLAIVWSP 348 (670)
T ss_pred eccccChhhhhcCCCCcc-cccccccCcccceeeeccccccCCcccchHhhhhchhhhhhcccc-------ccceeecCC
Confidence 999999999999999544 22221000 011112233456789999999999999999887633 799999999
Q ss_pred ccccCCChhHHHHHHHHHHHHHHHHHHHHHhhcccccccC
Q 010347 309 NMTQMADPLTALMYAVQVMNFLKMLILRTLREREDSVVEH 348 (512)
Q Consensus 309 nLlr~~d~~~~l~~~~~v~~~l~~LI~~~L~e~~~~if~~ 348 (512)
+++++...+........----+.+.|..+.++.-+.+|..
T Consensus 349 ~~~r~pptL~~~~~h~~~~~~~~~~~~~~~~e~s~~~~~~ 388 (670)
T KOG1449|consen 349 NLFRPPPTLNGADTHLLSGLNVHTAICDFFIENSESLFVN 388 (670)
T ss_pred CCCCCCCCCCchhhhhcccCCcceeecccchhhhhhhhhc
Confidence 9999865332211111000012333445556666666643
No 64
>smart00285 PBD P21-Rho-binding domain. Small domains that bind Cdc42p- and/or Rho-like small GTPases. Also known as the Cdc42/Rac interactive binding (CRIB).
Probab=68.05 E-value=1.4 Score=31.38 Aligned_cols=29 Identities=55% Similarity=0.924 Sum_probs=23.5
Q ss_pred ccCCccccccccchhhh-hhcccCCCcccC
Q 010347 116 ISWPTNVRHVAHVTFDR-FNGFLGLPVEFE 144 (512)
Q Consensus 116 ~g~~~~v~~la~v~~~r-l~~~~glp~~~~ 144 (512)
|+.|++++|++||.++. ..++.|+|.+++
T Consensus 1 IS~P~nf~H~~HVg~d~~~~~f~glp~ew~ 30 (36)
T smart00285 1 ISTPTDFKHIAHVGFDGQTGEFTGLPTEWE 30 (36)
T ss_pred CCCCCCCcEEEEeeECCCCCccCCCCHHHH
Confidence 57899999999999998 456888876554
No 65
>cd00132 CRIB PAK (p21 activated kinase) Binding Domain (PBD), binds Cdc42p- and/or Rho-like small GTPases; also known as the Cdc42/Rac interactive binding (CRIB) motif; has been shown to inhibit transcriptional activation and cell transformation mediated by the Ras-Rac pathway. CRIB-containing effector proteins are functionally diverse and include serine/threonine kinases, tyrosine kinases, actin-binding proteins, and adapter molecules.
Probab=61.06 E-value=4.6 Score=29.75 Aligned_cols=20 Identities=50% Similarity=0.860 Sum_probs=18.1
Q ss_pred ccccCCccccccccchhhhh
Q 010347 114 MEISWPTNVRHVAHVTFDRF 133 (512)
Q Consensus 114 ~~~g~~~~v~~la~v~~~rl 133 (512)
|+|++|+.++|++||.++..
T Consensus 1 ~~IS~Ptnf~H~~HvG~d~~ 20 (42)
T cd00132 1 MEISTPTDFKHISHVGWDGV 20 (42)
T ss_pred CcccCCCCcCcccccCCCCC
Confidence 57999999999999999876
No 66
>cd01093 CRIB_PAK_like PAK (p21 activated kinase) Binding Domain (PBD), binds Cdc42p- and/or Rho-like small GTPases; also known as the Cdc42/Rac interactive binding (CRIB) motif; has been shown to inhibit transcriptional activation and cell transformation mediated by the Ras-Rac pathway. This subgroup of CRIB/PBD-domains is found N-terminal of Serine/Threonine kinase domains in PAK and PAK-like proteins.
Probab=48.13 E-value=5.9 Score=29.76 Aligned_cols=30 Identities=53% Similarity=0.826 Sum_probs=24.2
Q ss_pred cccCCccccccccchhhhhh-cccCCCcccC
Q 010347 115 EISWPTNVRHVAHVTFDRFN-GFLGLPVEFE 144 (512)
Q Consensus 115 ~~g~~~~v~~la~v~~~rl~-~~~glp~~~~ 144 (512)
+|+.|+.+.|..||.++.-. ++.|+|.++.
T Consensus 2 ~IS~P~n~~H~~Hv~~d~~~g~f~glP~eW~ 32 (46)
T cd01093 2 EISSPTNFKHRVHVGFDPQTGEFTGLPEEWQ 32 (46)
T ss_pred ccCCCCCceeeeEeeECCCCCcccCCCHHHH
Confidence 57889999999999999844 4888876553
No 67
>smart00139 MyTH4 Domain in Myosin and Kinesin Tails. Domain present twice in myosin-VIIa, and also present in 3 other myosins.
Probab=47.20 E-value=11 Score=35.00 Aligned_cols=21 Identities=29% Similarity=0.324 Sum_probs=18.4
Q ss_pred hhhhchhhHHHHHHHHhhccc
Q 010347 81 EAEGDQLSLLALLIAIFRKSL 101 (512)
Q Consensus 81 ~~~~~~~~~~a~~~~~~~~sl 101 (512)
.+..+||.||++|+.+|++|-
T Consensus 80 ~s~~rgW~Ll~l~~~~FpPS~ 100 (144)
T smart00139 80 QSEERGWELLYLCTSLFPPSE 100 (144)
T ss_pred hHHHHHHHHHHHHHhHcCChH
Confidence 456779999999999999994
No 68
>PF00786 PBD: P21-Rho-binding domain; InterPro: IPR000095 The molecular bases of the versatile functions of Rho-like GTPases are still unknown. Small domains that bind Cdc42p- and/or Rho-like small GTPases. Also known as the Cdc42/Rac interactive binding (CRIB). The Cdc42/Rac interactive binding (CRIB) region has been shown to inhibit transcriptional activation and cell transformation mediated by the Ras-Rac pathway []. In fission yeast pak1+ encodes a protein kinase that interacts with Cdc42p and is involved in the control of cell polarity and mating [].; GO: 0005515 protein binding; PDB: 2OV2_O 1EES_B 2ODB_B 1E0A_B 2QME_I 1F3M_B 3PCS_H 1T84_A 2K42_A 1EJ5_A ....
Probab=39.90 E-value=6.6 Score=30.93 Aligned_cols=31 Identities=55% Similarity=0.791 Sum_probs=20.4
Q ss_pred cccCCccccccccchhhhhhcc-cCCCcccCC
Q 010347 115 EISWPTNVRHVAHVTFDRFNGF-LGLPVEFEP 145 (512)
Q Consensus 115 ~~g~~~~v~~la~v~~~rl~~~-~glp~~~~p 145 (512)
+||-|++++|++||.++.-.+. .|+|.++..
T Consensus 1 ~Is~P~nf~H~~HVg~d~~~g~~~glp~ew~~ 32 (59)
T PF00786_consen 1 DISNPTNFKHVAHVGWDPNTGGFTGLPPEWEK 32 (59)
T ss_dssp TB---EEEEEEEEEEEETTTTEEES--HHHHH
T ss_pred CCCCCCCCcceeeeccCCCccccccCCHHHHh
Confidence 4788999999999999987764 487766543
No 69
>PF00784 MyTH4: MyTH4 domain; InterPro: IPR000857 The microtubule-based kinesin motors and actin-based myosin motors generate movements required for intracellular trafficking, cell division, and muscle contraction. In general, these proteins consist of a motor domain that generates movement and a tail region that varies widely from class to class and is thought to mediate many of the regulatory or cargo binding functions specific to each class of motor []. The Myosin Tail Homology 4 (MyTH4) domain has been identified as a conserved domain in the tail domains of several different unconventional myosins [] and a plant kinesin-like protein [], but has more recently been found in several non-motor proteins []. Although the function is not yet fully understood, there is an evidence that the MyTH4 domain of Myosin-X (Myo10) binds to microtubules and thus could provide a link between an actin-based motor protein and the microtubule cytoskeleton []. The MyTH4 domain is found in one or two copies associated with other domains, such as myosin head, kinesin motor, FERM, PH, SH3 and IQ. The domain is predicted to be largely alpha-helical, interrupted by three or four turns. The MyTH4 domain contains four highly conserved regions designated MGD (consensus sequence L(K/R)(F/Y)MGDhP, LRDE (consensus LRDEhYCQhhKQHxxxN), RGW (consensus RGWxLh), and ELEA (RxxPPSxhELEA), where h indicates a hydrophobic residue and x is any residue [].; GO: 0005856 cytoskeleton; PDB: 3AU5_A 3AU4_A 3PZD_A 3PVL_A.
Probab=35.47 E-value=9.5 Score=33.61 Aligned_cols=58 Identities=17% Similarity=0.009 Sum_probs=30.3
Q ss_pred hhhhhchhhHHHHHHHHhhccccccccCCcccccc-c-ccCCccccccccchhhhhhccc
Q 010347 80 REAEGDQLSLLALLIAIFRKSLVACKSDTRELCAM-E-ISWPTNVRHVAHVTFDRFNGFL 137 (512)
Q Consensus 80 ~~~~~~~~~~~a~~~~~~~~sl~~~~~~~~~~~~~-~-~g~~~~v~~la~v~~~rl~~~~ 137 (512)
+.+..+||.||++|+.+|++|-.-...-...+..- . ......+..+|..++.++.+..
T Consensus 37 ~~s~~r~W~Ll~~~~~~f~PS~~l~~yL~~fl~~~~~~~~~~~~~~~~a~~c~~~L~~~~ 96 (114)
T PF00784_consen 37 PDSCIRGWQLLALCCSCFPPSKDLLPYLRNFLNRHADSQESDPEVGKYAQYCLRRLKRTK 96 (114)
T ss_dssp CHHHHHHHHHHHHHCCC----CCCHHHHHHHHHCCHCHHSTTSHHHCCHHHHHHHHCCHH
T ss_pred hhhHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHcCcccCCCchHHHHHHHHHHHHHHHh
Confidence 34567799999999999999952222111111100 0 0112456778888888777643
No 70
>KOG4270 consensus GTPase-activator protein [Signal transduction mechanisms]
Probab=22.99 E-value=41 Score=38.22 Aligned_cols=67 Identities=15% Similarity=0.119 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHhcCCCCcCCceecCCCchhHHHHHHHHhc-CC---CCCCCChhhhHHHHHHHHHhCCCCCCCCCC
Q 010347 179 TILLLMQRHLYGQGGLQAEGIFRINGENSQEEYVRDQLNR-GV---IPDGIDIHCLAGLIKAWFRELPAGVLDPLS 250 (512)
Q Consensus 179 ~il~~~i~~L~e~~Gl~~EGIFRvsG~~~~v~~Lr~~ln~-g~---~~~~~Dvh~vAsLLK~fLReLPePLL~~~l 250 (512)
.-...+..+. .+.+....|.|+.+| ..+..+++.-+. +. ...+...++++++++.+++.+ .|..+.-
T Consensus 60 ~~~~~~~~~~-~~~s~~~~~~~~~~~--~~~~~~~~e~e~~~~kie~~~d~~~~~~~~f~~~~~~~~--f~~~~~e 130 (577)
T KOG4270|consen 60 MDSEQLRLFQ-AQKSSGEEGLFRLPG--AKIDTLKEEEEECGMKIEQPTDQRHADHVTFDRKEGEYL--FLGLPVE 130 (577)
T ss_pred cchhhhhhhh-hhhhhhhccccccCc--chhhhhhchHHhhcCccccCcchhhhhhhhhhhhcchhh--hccchhh
Confidence 3345555544 778889999999999 444444443333 32 346788999999999999988 5555433
Done!