BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010349
(512 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1XA6|A Chain A, Crystal Structure Of The Human Beta2-Chimaerin
Length = 466
Score = 59.3 bits (142), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 79/167 (47%), Gaps = 22/167 (13%)
Query: 193 GLQAEGIFRINGENSQEEYVRDQLNR---------GVIPDGIDIHCLAGLIKAWFRELPA 243
GL++EG++R++G E V+ +R V PD I+ + G +K +FR+LP
Sbjct: 303 GLKSEGLYRVSGFTEHIEDVKMAFDRDGEKADISANVYPD---INIITGALKLYFRDLPI 359
Query: 244 GVLDPLSPEQVMQC-------QTEEDCLQLVRLLPPTESALLDWAINLMADVVQQENLNK 296
V+ + + + + E +++ LLPP L + + + V E N
Sbjct: 360 PVITYDTYSKFIDAAKISNADERLEAVHEVLMLLPPAHYETLRYLMIHLKKVTMNEKDNF 419
Query: 297 MNARNVAMVFAPNMTQMADPLTALMYAVQVMNFLKMLILRTLRERED 343
MNA N+ +VF P T M P + + + M + K LI++ L E ED
Sbjct: 420 MNAENLGIVFGP--TLMRPPEDSTLTTLHDMRYQK-LIVQILIENED 463
>pdb|3EAP|A Chain A, Crystal Structure Of The Rhogap Domain Of Arhgap11a
pdb|3EAP|B Chain B, Crystal Structure Of The Rhogap Domain Of Arhgap11a
pdb|3EAP|C Chain C, Crystal Structure Of The Rhogap Domain Of Arhgap11a
pdb|3EAP|D Chain D, Crystal Structure Of The Rhogap Domain Of Arhgap11a
Length = 271
Score = 59.3 bits (142), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 59/223 (26%), Positives = 104/223 (46%), Gaps = 17/223 (7%)
Query: 106 SDTRELCAMEISWPTNVRHVAHVTFDRFNGFLGLPVE-FEPEVPRRAPSASAT-----VF 159
S RE + W + R V F G+ V+ + RR +AT +F
Sbjct: 8 SSGRENLYFQGMW--DQRLVRLALLQHLRAFYGIKVKGVRGQCDRRRHETAATEIGGKIF 65
Query: 160 GVSTESMQLSFDSRGNSVPTILLLMQRHLYGQGGLQAEGIFRINGENSQEEYVRDQLNRG 219
GV ++ S +P+ L+ L + + EG+FR +G + + ++++++ G
Sbjct: 66 GVPFNALPHSAVPEYGHIPSFLVDACTSL--EDHIHTEGLFRKSGSVIRLKALKNKVDHG 123
Query: 220 VIPDGIDIHC-LAGLIKAWFRELPAGVLDPLSPEQVMQCQ---TEED---CLQLVRLLPP 272
C +AGL+K +FRELP +L E +++ Q TEE L L LL
Sbjct: 124 EGCLSSAPPCDIAGLLKQFFRELPEPILPADLHEALLKAQQLGTEEKNKATLLLSCLLAD 183
Query: 273 TESALLDWAINLMADVVQQENLNKMNARNVAMVFAPNMTQMAD 315
+L + N + +V + + NKM++ N+A++FAPN+ Q ++
Sbjct: 184 HTVHVLRYFFNFLRNVSLRSSENKMDSSNLAVIFAPNLLQTSE 226
>pdb|1OW3|A Chain A, Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With Rhogap
pdb|1RGP|A Chain A, Gtpase-Activation Domain From Rhogap
Length = 242
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 51/187 (27%), Positives = 80/187 (42%), Gaps = 15/187 (8%)
Query: 159 FGVSTESMQLSFDSRGNSVPTILLLMQRHLYGQG-GLQAEGIFRINGENSQEEYVRDQLN 217
FGVS + +Q + P ++L + Y Q L EGIFR + V+ + N
Sbjct: 45 FGVSLQHLQ---EKNPEQEPIPIVLRETVAYLQAHALTTEGIFRRSANTQVVREVQQKYN 101
Query: 218 RGVIPDGID----IHCLAGLIKAWFRELPAGVLD-PLSPEQVMQCQTEED-----CLQLV 267
G +P D +H A ++K + RELP +L L P V +E LQ++
Sbjct: 102 MG-LPVDFDQYNELHLPAVILKTFLRELPEPLLTFDLYPHVVGFLNIDESQRVPATLQVL 160
Query: 268 RLLPPTESALLDWAINLMADVVQQENLNKMNARNVAMVFAPNMTQMADPLTALMYAVQVM 327
+ LP +L + + + + NKM N+A+VF PN+ D L +
Sbjct: 161 QTLPEENYQVLRFLTAFLVQISAHSDQNKMTNTNLAVVFGPNLLWAKDAAITLKAINPIN 220
Query: 328 NFLKMLI 334
F K L+
Sbjct: 221 TFTKFLL 227
>pdb|3CXL|A Chain A, Crystal Structure Of Human Chimerin 1 (Chn1)
Length = 463
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/163 (26%), Positives = 75/163 (46%), Gaps = 31/163 (19%)
Query: 193 GLQAEGIFRINGENSQEEYVRDQLNRGVIPDGI------DIHCLAGLIKAWFRELP---- 242
GL +EG++R++G + E V+ +R I DI+ + G +K +FR+LP
Sbjct: 300 GLNSEGLYRVSGFSDLIEDVKMAFDRDGEKADISVNMYEDINIITGALKLYFRDLPIPLI 359
Query: 243 -----------AGVLDPLSPEQVMQCQTEEDCLQLVRLLPPTESALLDWAINLMADVVQQ 291
A ++DP EQ+ E + ++LLPP L + + + V
Sbjct: 360 TYDAYPKFIESAKIMDP--DEQL------ETLHEALKLLPPAHCETLRYLMAHLKRVTLH 411
Query: 292 ENLNKMNARNVAMVFAPNMTQMADPLTALMYAVQVMNFLKMLI 334
E N MNA N+ +VF P T M P M A+ + + ++++
Sbjct: 412 EKENLMNAENLGIVFGP--TLMRSPELDAMAALNDIRYQRLVV 452
>pdb|3IUG|A Chain A, Crystal Structure Of The Rhogap Domain Of Rics
pdb|3IUG|B Chain B, Crystal Structure Of The Rhogap Domain Of Rics
Length = 229
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 69/132 (52%), Gaps = 21/132 (15%)
Query: 196 AEGIFRINGENSQEEYVRDQLNRGVIPDGI------DIHCLAGLIKAWFRELPAGVLDPL 249
+GI+R++G S + +R + + +PD DIH + L K +FRELP +PL
Sbjct: 54 VDGIYRLSGVASNIQRLRHEFDSEHVPDLTKEPYVQDIHSVGSLCKLYFRELP----NPL 109
Query: 250 SPEQVMQ-------CQTEEDCL----QLVRLLPPTESALLDWAINLMADVVQQENLNKMN 298
Q+ + T+E+ L +++ LPP L++ + ++ + ++ M+
Sbjct: 110 LTYQLYEKFSDAVSAATDEERLIKIHDVIQQLPPPHYRTLEFLMRHLSLLADYCSITNMH 169
Query: 299 ARNVAMVFAPNM 310
A+N+A+V+APN+
Sbjct: 170 AKNLAIVWAPNL 181
>pdb|1GRN|B Chain B, Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX
Length = 203
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 51/187 (27%), Positives = 80/187 (42%), Gaps = 15/187 (8%)
Query: 159 FGVSTESMQLSFDSRGNSVPTILLLMQRHLYGQG-GLQAEGIFRINGENSQEEYVRDQLN 217
FGVS + +Q + P ++L + Y Q L EGIFR + V+ + N
Sbjct: 6 FGVSLQHLQ---EKNPEQEPIPIVLRETVAYLQAHALTTEGIFRRSANTQVVREVQQKYN 62
Query: 218 RGVIPDGID----IHCLAGLIKAWFRELPAGVLD-PLSPEQVMQCQTEED-----CLQLV 267
G +P D +H A ++K + RELP +L L P V +E LQ++
Sbjct: 63 MG-LPVDFDQYNELHLPAVILKTFLRELPEPLLTFDLYPHVVGFLNIDESQRVPATLQVL 121
Query: 268 RLLPPTESALLDWAINLMADVVQQENLNKMNARNVAMVFAPNMTQMADPLTALMYAVQVM 327
+ LP +L + + + + NKM N+A+VF PN+ D L +
Sbjct: 122 QTLPEENYQVLRFLTAFLVQISAHSDQNKMTNTNLAVVFGPNLLWAKDAAITLKAINPIN 181
Query: 328 NFLKMLI 334
F K L+
Sbjct: 182 TFTKFLL 188
>pdb|1TX4|A Chain A, RhoRHOGAPGDP(DOT)ALF4 COMPLEX
Length = 198
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 51/187 (27%), Positives = 80/187 (42%), Gaps = 15/187 (8%)
Query: 159 FGVSTESMQLSFDSRGNSVPTILLLMQRHLYGQG-GLQAEGIFRINGENSQEEYVRDQLN 217
FGVS + +Q + P ++L + Y Q L EGIFR + V+ + N
Sbjct: 9 FGVSLQHLQ---EKNPEQEPIPIVLRETVAYLQAHALTTEGIFRRSANTQVVREVQQKYN 65
Query: 218 RGVIPDGID----IHCLAGLIKAWFRELPAGVLD-PLSPEQVMQCQTEED-----CLQLV 267
G +P D +H A ++K + RELP +L L P V +E LQ++
Sbjct: 66 MG-LPVDFDQYNALHLPAVILKTFLRELPEPLLTFDLYPHVVGFLNIDESQRVPATLQVL 124
Query: 268 RLLPPTESALLDWAINLMADVVQQENLNKMNARNVAMVFAPNMTQMADPLTALMYAVQVM 327
+ LP +L + + + + NKM N+A+VF PN+ D L +
Sbjct: 125 QTLPEENYQVLRFLTAFLVQISAHSDQNKMTNTNLAVVFGPNLLWAKDAAITLKAINPIN 184
Query: 328 NFLKMLI 334
F K L+
Sbjct: 185 TFTKFLL 191
>pdb|1AM4|A Chain A, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
pdb|1AM4|B Chain B, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
pdb|1AM4|C Chain C, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
Length = 199
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 51/187 (27%), Positives = 80/187 (42%), Gaps = 15/187 (8%)
Query: 159 FGVSTESMQLSFDSRGNSVPTILLLMQRHLYGQG-GLQAEGIFRINGENSQEEYVRDQLN 217
FGVS + +Q + P ++L + Y Q L EGIFR + V+ + N
Sbjct: 10 FGVSLQHLQ---EKNPEQEPIPIVLRETVAYLQAHALTTEGIFRRSANTQVVREVQQKYN 66
Query: 218 RGVIPDGID----IHCLAGLIKAWFRELPAGVLD-PLSPEQVMQCQTEED-----CLQLV 267
G +P D +H A ++K + RELP +L L P V +E LQ++
Sbjct: 67 MG-LPVDFDQYNELHLPAVILKTFLRELPEPLLTFDLYPHVVGFLNIDESQRVPATLQVL 125
Query: 268 RLLPPTESALLDWAINLMADVVQQENLNKMNARNVAMVFAPNMTQMADPLTALMYAVQVM 327
+ LP +L + + + + NKM N+A+VF PN+ D L +
Sbjct: 126 QTLPEENYQVLRFLTAFLVQISAHSDQNKMTNTNLAVVFGPNLLWAKDAAITLKAINPIN 185
Query: 328 NFLKMLI 334
F K L+
Sbjct: 186 TFTKFLL 192
>pdb|2OSA|A Chain A, The Rho-Gap Domain Of Human N-Chimaerin
Length = 202
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 48/172 (27%), Positives = 79/172 (45%), Gaps = 32/172 (18%)
Query: 193 GLQAEGIFRINGENSQEEYVRDQLNRGVIPDGI------DIHCLAGLIKAWFRELP---- 242
GL +EG++R++G + E V+ +R I DI+ + G +K +FR+LP
Sbjct: 39 GLNSEGLYRVSGFSDLIEDVKMAFDRDGEKADISVNMYEDINIITGALKLYFRDLPIPLI 98
Query: 243 -----------AGVLDPLSPEQVMQCQTEEDCLQLVRLLPPTESALLDWAINLMADVVQQ 291
A ++DP EQ+ E + ++LLPP L + + + V
Sbjct: 99 TYDAYPKFIESAKIMDP--DEQL------ETLHEALKLLPPAHCETLRYLMAHLKRVTLH 150
Query: 292 ENLNKMNARNVAMVFAPNMTQMADPLTALMYAVQVMNFLKMLILRTLRERED 343
E N MNA N+ +VF P T M P M A+ + + + L++ L + ED
Sbjct: 151 EKENLMNAENLGIVFGP--TLMRSPELDAMAALNDIRYQR-LVVELLIKNED 199
>pdb|2NGR|B Chain B, Transition State Complex For Gtp Hydrolysis By Cdc42:
Comparisons Of The High Resolution Structures For Cdc42
Bound To The Active And Catalytically Compromised Forms
Of The Cdc42-gap
Length = 234
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 50/187 (26%), Positives = 79/187 (42%), Gaps = 15/187 (8%)
Query: 159 FGVSTESMQLSFDSRGNSVPTILLLMQRHLYGQG-GLQAEGIFRINGENSQEEYVRDQLN 217
FGVS + +Q + P ++L + Y Q L EGIF + V+ + N
Sbjct: 37 FGVSLQHLQ---EKNPEQEPIPIVLRETVAYLQAHALTTEGIFARSANTQVVREVQQKYN 93
Query: 218 RGVIPDGID----IHCLAGLIKAWFRELPAGVLD-PLSPEQVMQCQTEED-----CLQLV 267
G +P D +H A ++K + RELP +L L P V +E LQ++
Sbjct: 94 MG-LPVDFDQYNELHLPAVILKTFLRELPEPLLTFDLYPHVVGFLNIDESQRVPATLQVL 152
Query: 268 RLLPPTESALLDWAINLMADVVQQENLNKMNARNVAMVFAPNMTQMADPLTALMYAVQVM 327
+ LP +L + + + + NKM N+A+VF PN+ D L +
Sbjct: 153 QTLPEENYQVLRFLTAFLVQISAHSDQNKMTNTNLAVVFGPNLLWAKDAAITLKAINPIN 212
Query: 328 NFLKMLI 334
F K L+
Sbjct: 213 TFTKFLL 219
>pdb|2EE5|A Chain A, Solution Structure Of The N-Teruminus Extended Rhogap
Domain From Human Rho Gtpase Activating Protein 5
Variant
Length = 219
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/133 (23%), Positives = 63/133 (47%), Gaps = 19/133 (14%)
Query: 193 GLQAEGIFRINGENSQEEYVRDQL----NRGVIPDGIDIHCLAGLIKAWFRELPAGVLDP 248
GL EG++R++G + ++ ++ Q N ++ + ++ +AG +KA+F +LP DP
Sbjct: 52 GLCTEGLYRVSGNKTDQDNIQKQFDQDHNINLVSMEVTVNAVAGALKAFFADLP----DP 107
Query: 249 LSPEQVM-----------QCQTEEDCLQLVRLLPPTESALLDWAINLMADVVQQENLNKM 297
L P + + + ++V+ P + + I + V QQ +N M
Sbjct: 108 LIPYSLHPELLEAAKIPDKTERLHALKEIVKKFHPVNYDVFRYVITHLNRVSQQHKINLM 167
Query: 298 NARNVAMVFAPNM 310
A N+++ F P +
Sbjct: 168 TADNLSICFWPTL 180
>pdb|2EE4|A Chain A, Solution Structure Of The Rhogap Domain From Human Rho
Gtpase Activating Protein 5 Variant
Length = 209
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/133 (23%), Positives = 63/133 (47%), Gaps = 19/133 (14%)
Query: 193 GLQAEGIFRINGENSQEEYVRDQL----NRGVIPDGIDIHCLAGLIKAWFRELPAGVLDP 248
GL EG++R++G + ++ ++ Q N ++ + ++ +AG +KA+F +LP DP
Sbjct: 42 GLCTEGLYRVSGNKTDQDNIQKQFDQDHNINLVSMEVTVNAVAGALKAFFADLP----DP 97
Query: 249 LSPEQVM-----------QCQTEEDCLQLVRLLPPTESALLDWAINLMADVVQQENLNKM 297
L P + + + ++V+ P + + I + V QQ +N M
Sbjct: 98 LIPYSLHPELLEAAKIPDKTERLHALKEIVKKFHPVNYDVFRYVITHLNRVSQQHKINLM 157
Query: 298 NARNVAMVFAPNM 310
A N+++ F P +
Sbjct: 158 TADNLSICFWPTL 170
>pdb|3FK2|A Chain A, Crystal Structure Of The Rhogap Domain Of Human
Glucocorticoid Receptor Dna-Binding Factor 1
pdb|3FK2|B Chain B, Crystal Structure Of The Rhogap Domain Of Human
Glucocorticoid Receptor Dna-Binding Factor 1
pdb|3FK2|C Chain C, Crystal Structure Of The Rhogap Domain Of Human
Glucocorticoid Receptor Dna-Binding Factor 1
pdb|3FK2|D Chain D, Crystal Structure Of The Rhogap Domain Of Human
Glucocorticoid Receptor Dna-Binding Factor 1
Length = 246
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 65/147 (44%), Gaps = 25/147 (17%)
Query: 193 GLQAEGIFRINGENSQEEYVRDQL----NRGVIPDGIDIHCLAGLIKAWFRELPAGVLDP 248
GL EGI+R++G S+ E ++ Q N + ++ +AG +K++F ELP DP
Sbjct: 83 GLSTEGIYRVSGNKSEMESLQRQFDQDHNLDLAEKDFTVNTVAGAMKSFFSELP----DP 138
Query: 249 LSPEQVMQC------------QTEEDCLQLVRLLPPTESALLDWAINLMADVVQQENLNK 296
L P MQ Q ++++ P + + I+ + V +N
Sbjct: 139 LVPYN-MQIDLVEAHKINDREQKLHALKEVLKKFPKENHEVFKYVISHLNKVSHNNKVNL 197
Query: 297 MNARNVAMVFAPNMTQ----MADPLTA 319
M + N+++ F P + + D LTA
Sbjct: 198 MTSENLSICFWPTLMRPDFSTMDALTA 224
>pdb|3BYI|A Chain A, Crystal Structure Of Human Rho Gtpase Activating Protein
15 (arhgap15)
pdb|3BYI|B Chain B, Crystal Structure Of Human Rho Gtpase Activating Protein
15 (arhgap15)
pdb|3BYI|C Chain C, Crystal Structure Of Human Rho Gtpase Activating Protein
15 (arhgap15)
pdb|3BYI|D Chain D, Crystal Structure Of Human Rho Gtpase Activating Protein
15 (arhgap15)
Length = 214
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 66/134 (49%), Gaps = 20/134 (14%)
Query: 193 GLQAEGIFRINGENS---QEEYVRDQLNRGVIPDGI--DIHCLAGLIKAWFRELPAGVLD 247
GL +GI+R++G + + ++ +Q + + D DIH + G +K +FRELP +
Sbjct: 50 GLDVDGIYRVSGNLATIQKLRFIVNQEEKLNLDDSQWEDIHVVTGALKMFFRELP----E 105
Query: 248 PLSP----EQVMQCQTEED-------CLQLVRLLPPTESALLDWAINLMADVVQQENLNK 296
PL P EQ ++ ++D LV+ LPP + + +V + + N
Sbjct: 106 PLFPYSFFEQFVEAIKKQDNNTRIEAVKSLVQKLPPPNRDTMKVLFGHLTKIVAKASKNL 165
Query: 297 MNARNVAMVFAPNM 310
M+ +++ +VF P +
Sbjct: 166 MSTQSLGIVFGPTL 179
>pdb|3KUQ|A Chain A, Crystal Structure Of The Dlc1 Rhogap Domain
Length = 228
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 80/169 (47%), Gaps = 16/169 (9%)
Query: 156 ATVFGVSTESMQLSFDSRGNSVPTILLLMQRHLYGQGGLQAEGIFRINGENSQEEYVRDQ 215
+VFGV + ++ G +P + R+L L G+FR +G S+ + +R Q
Sbjct: 18 GSVFGVP---LTVNVQRTGQPLPQSIQQAMRYLRNHC-LDQVGLFRKSGVKSRIQALR-Q 72
Query: 216 LNRGVIP----DGIDIHCLAGLIKAWFRELPAGVLDPLSPE---QVMQCQTEEDCLQLVR 268
+N G I +G + +A ++K +FR+LP ++ E Q+ Q ++ LQ ++
Sbjct: 73 MNEGAIDCVNYEGQSAYDVADMLKQYFRDLPEPLMTNKLSETFLQIYQYVPKDQRLQAIK 132
Query: 269 ----LLPPTESALLDWAINLMADVVQQENLNKMNARNVAMVFAPNMTQM 313
LLP +L + ++DV N+M N+A+ AP++ +
Sbjct: 133 AAIMLLPDENREVLQTLLYFLSDVTAAVKENQMTPTNLAVCLAPSLFHL 181
>pdb|3MSX|B Chain B, Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With Gap
Domain Of Arhgap20
Length = 201
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 76/162 (46%), Gaps = 15/162 (9%)
Query: 158 VFGVSTESMQLSFDSRGNSVPTILLLMQRHLYGQGGLQAEGIFRINGENSQEEYVRDQLN 217
+FG+S ++ +++P +L M L +G L +GIFR + ++++LN
Sbjct: 12 LFGISLPNI-----CENDNLPKPVLDMLFFLNQKGPL-TKGIFRQSANVKSCRELKEKLN 65
Query: 218 RGV--IPDGIDIHCLAGLIKAWFRELPAGVLDPLSPEQ---VM-QCQTEEDCLQLVRLL- 270
GV D I +A ++K + R +P + + VM Q EE + RLL
Sbjct: 66 SGVEVHLDCESIFVIASVLKDFLRNIPGSIFSSDLYDHWVSVMDQGNDEEKINTVQRLLD 125
Query: 271 --PPTESALLDWAINLMADVVQQENLNKMNARNVAMVFAPNM 310
P LL + ++ ++ Q + N+M A N+A+ AP++
Sbjct: 126 QLPRANVVLLRYLFGVLHNIEQHSSSNQMTAFNLAVCVAPSI 167
>pdb|2OVJ|A Chain A, The Crystal Structure Of The Human Rac Gtpase Activating
Protein 1 (Racgap1) Mgcracgap
Length = 201
Score = 36.6 bits (83), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 78/175 (44%), Gaps = 18/175 (10%)
Query: 162 STESMQLSFDSRGNS-VPTILLLMQRHLYGQGGLQAEGIFRINGENSQEEYVRDQLNR-- 218
S E M F S+ + +P+I++ + Q GL G++RI+G + + ++++ R
Sbjct: 1 SMEGMLADFVSQTSPMIPSIVVHCVNEI-EQRGLTETGLYRISGCDRTVKELKEKFLRVK 59
Query: 219 --GVIPDGIDIHCLAGLIKAWFRELPAGVLDPLSPEQVMQCQ--TEED-----CLQLVRL 269
++ DIH + L+K + R L +L M+ T+ED Q V
Sbjct: 60 TVPLLSKVDDIHAICSLLKDFLRNLKEPLLTFRLNRAFMEAAEITDEDNSIAAMYQAVGE 119
Query: 270 LPPTESALLDWAINLMADVVQQENLNKMNARNVAMVFAPNMTQMA----DPLTAL 320
LP L + + + V Q + KM+ N+A VF P + A DP+T L
Sbjct: 120 LPQANRDTLAFLMIHLQRVAQSPH-TKMDVANLAKVFGPTIVAHAVPNPDPVTML 173
>pdb|1F7C|A Chain A, Crystal Structure Of The Bh Domain From Graf, The Gtpase
Regulator Associated With Focal Adhesion Kinase
Length = 231
Score = 35.4 bits (80), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 39/185 (21%), Positives = 72/185 (38%), Gaps = 23/185 (12%)
Query: 187 HLYGQGGLQAEGIFRINGENSQEEYVRDQL--------NRGVIPDGIDIHCLAGLIKAWF 238
H G+ +G++RI G NS+ + + L I +I + +K +
Sbjct: 46 HAVETRGINEQGLYRIVGVNSRVQKLLSILMDPKTATETETEICAEWEIKTITSALKTYL 105
Query: 239 RELPAGVLDPLSPEQVMQCQTEEDCLQ-----------LVRLLPPTESALLDWAINLMAD 287
R LP PL Q + + L+ LV LP +L +N +A
Sbjct: 106 RMLPG----PLMMYQFQRSFIKAAKLENQESRVSEIHSLVHRLPEKNRQMLHLLMNHLAK 161
Query: 288 VVQQENLNKMNARNVAMVFAPNMTQMADPLTALMYAVQVMNFLKMLILRTLREREDSVVE 347
V N M N+ +VF P + + + A + ++ N + +++ + ++V E
Sbjct: 162 VADNHKQNLMTVANLGVVFGPTLLRPQEETVAAIMDIKFQNIVIEILIENHEKIFNTVPE 221
Query: 348 HTPSS 352
PS+
Sbjct: 222 TPPSN 226
>pdb|1PBW|A Chain A, Structure Of Bcr-Homology (Bh) Domain
pdb|1PBW|B Chain B, Structure Of Bcr-Homology (Bh) Domain
Length = 216
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 32/141 (22%), Positives = 64/141 (45%), Gaps = 22/141 (15%)
Query: 191 QGGLQAEGIFRINGENSQEEYVRDQLN---RGVIPDGIDIHCLAGLIKAWFRELPAGVLD 247
+ GL+ ++R ++ E +R L+ V + ID+H LA K + +LP +
Sbjct: 38 KKGLECSTLYRTQSSSNLAE-LRQLLDCDTPSVDLEMIDVHVLADAFKRYLLDLP----N 92
Query: 248 PLSPEQVM--------QCQTEEDCLQLVRLL------PPTESALLDWAINLMADVVQQEN 293
P+ P V + Q+ E+ +QL++ L P L + + + Q +
Sbjct: 93 PVIPAAVYSEMISLAPEVQSSEEYIQLLKKLIRSPSIPHQYWLTLQYLLKHFFKLSQTSS 152
Query: 294 LNKMNARNVAMVFAPNMTQMA 314
N +NAR ++ +F+P + + +
Sbjct: 153 KNLLNARVLSEIFSPMLFRFS 173
>pdb|3H86|B Chain B, Crystal Structure Of Adenylate Kinase From Methanococcus
Maripaludis
pdb|3H86|A Chain A, Crystal Structure Of Adenylate Kinase From Methanococcus
Maripaludis
pdb|3H86|C Chain C, Crystal Structure Of Adenylate Kinase From Methanococcus
Maripaludis
pdb|3H86|G Chain G, Crystal Structure Of Adenylate Kinase From Methanococcus
Maripaludis
Length = 192
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 25/48 (52%)
Query: 222 PDGIDIHCLAGLIKAWFRELPAGVLDPLSPEQVMQCQTEEDCLQLVRL 269
P +D H K + LPA VL L+P+ V+ +T+ D + + RL
Sbjct: 86 PVAVDTHSTVKTPKGYLPGLPAWVLTELNPDIVIVVETDGDEILMRRL 133
>pdb|1KHT|A Chain A, Adenylate Kinase From Methanococcus Voltae
pdb|1KHT|B Chain B, Adenylate Kinase From Methanococcus Voltae
pdb|1KHT|C Chain C, Adenylate Kinase From Methanococcus Voltae
Length = 192
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 29/60 (48%)
Query: 222 PDGIDIHCLAGLIKAWFRELPAGVLDPLSPEQVMQCQTEEDCLQLVRLLPPTESALLDWA 281
P +D H K + LP+ VL+ L+P+ ++ +T D + + R+ T LD A
Sbjct: 86 PVAVDTHSTVSTPKGYLPGLPSWVLNELNPDLIIVVETTGDEILMRRMSDETRVRDLDTA 145
>pdb|2ODB|B Chain B, The Crystal Structure Of Human Cdc42 In Complex With The
Crib Domain Of Human P21-Activated Kinase 6 (Pak6)
Length = 35
Score = 30.0 bits (66), Expect = 3.1, Method: Composition-based stats.
Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 115 EISWPTNVRHVAHVTFDRFNG-FLGLPVEFE 144
EIS P N +H H +FD G F+GLP +++
Sbjct: 1 EISAPQNFQHRVHTSFDPKEGKFVGLPPQWQ 31
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.132 0.380
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,370,513
Number of Sequences: 62578
Number of extensions: 498646
Number of successful extensions: 1109
Number of sequences better than 100.0: 30
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 1078
Number of HSP's gapped (non-prelim): 30
length of query: 512
length of database: 14,973,337
effective HSP length: 103
effective length of query: 409
effective length of database: 8,527,803
effective search space: 3487871427
effective search space used: 3487871427
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)