Query 010349
Match_columns 512
No_of_seqs 387 out of 1658
Neff 5.7
Searched_HMMs 29240
Date Mon Mar 25 04:52:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010349.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010349hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1tx4_A P50-rhogap; complex (GT 100.0 3.4E-39 1.2E-43 308.6 16.7 187 153-346 3-198 (198)
2 1ow3_A RHO-GTPase-activating p 100.0 9.7E-39 3.3E-43 315.0 16.7 191 152-349 38-237 (242)
3 3msx_B RHO GTPase-activating p 100.0 2.2E-38 7.4E-43 303.3 15.2 182 154-346 8-201 (201)
4 3fk2_A Glucocorticoid receptor 100.0 5.1E-38 1.7E-42 310.6 14.6 185 154-348 49-245 (246)
5 2ee4_A RHO GTPase activating p 100.0 3.6E-38 1.2E-42 303.9 12.7 185 154-348 8-204 (209)
6 2osa_A N-chimaerin; RHO-GAP, G 100.0 1.6E-37 5.4E-42 297.9 16.6 183 155-346 5-202 (202)
7 3iug_A RHO/CDC42/RAC GTPase-ac 100.0 8.7E-38 3E-42 305.4 14.3 193 154-352 17-225 (229)
8 3byi_A RHO GTPase activating p 100.0 8.1E-38 2.8E-42 302.4 13.8 185 155-348 16-213 (214)
9 1pbw_A Rhogap domain, phosphat 100.0 5.4E-38 1.9E-42 304.5 10.6 187 155-351 4-203 (216)
10 3eap_A RHO GTPase-activating p 100.0 1.7E-37 5.7E-42 311.1 11.8 227 117-348 19-259 (271)
11 3kuq_A RHO GTPase-activating p 100.0 2.6E-36 8.9E-41 295.1 16.1 158 154-315 16-183 (228)
12 1f7c_A Rhogap protein; GTPase 100.0 1.7E-36 5.9E-41 296.9 9.3 190 156-351 16-221 (231)
13 2ovj_A Mgcracgap, RAC GTPase-a 100.0 7E-35 2.4E-39 279.7 17.4 178 161-348 4-196 (201)
14 2xs6_A Phosphatidylinositol 3- 100.0 2.6E-36 9E-41 293.1 0.8 176 154-337 18-207 (214)
15 3qis_A Inositol polyphosphate 100.0 5.4E-34 1.8E-38 296.9 14.8 166 175-342 197-364 (366)
16 3cxl_A N-chimerin; SH2, RHO-GA 100.0 1.6E-33 5.6E-38 301.2 13.3 183 155-346 266-463 (463)
17 2qme_I CRIB domain of the seri 79.6 0.44 1.5E-05 33.0 0.4 30 115-144 1-31 (36)
18 2odb_B Serine/threonine-protei 78.3 0.37 1.3E-05 33.2 -0.3 29 115-143 1-30 (35)
19 1f3m_A Serine/threonine-protei 64.7 1.2 4.2E-05 36.3 -0.3 59 113-188 3-62 (80)
20 2ov2_I Serine/threonine-protei 62.7 2.3 7.7E-05 29.2 0.8 31 115-145 1-32 (35)
21 1cee_B Wiskott-aldrich syndrom 53.3 4 0.00014 31.2 0.9 27 111-137 4-30 (59)
22 2p4p_A Hypothetical protein HD 20.2 91 0.0031 24.7 3.8 48 196-244 7-54 (86)
No 1
>1tx4_A P50-rhogap; complex (GTPase activation/proto-oncogene), GTPase, transition state, GAP; HET: GDP; 1.65A {Homo sapiens} SCOP: a.116.1.1 PDB: 1am4_A* 1grn_B*
Probab=100.00 E-value=3.4e-39 Score=308.63 Aligned_cols=187 Identities=25% Similarity=0.354 Sum_probs=158.7
Q ss_pred CCCCcccccChhhhhhhcCCCCCCCCHHHHHHHHHHHhcCCCCcCCceecCCCchhHHHHHHHHhcCCCCC---CCChhh
Q 010349 153 SASATVFGVSTESMQLSFDSRGNSVPTILLLMQRHLYGQGGLQAEGIFRINGENSQEEYVRDQLNRGVIPD---GIDIHC 229 (512)
Q Consensus 153 ~~~~~vFGv~Le~l~~~~~~~g~~VP~il~~~i~~L~e~~Gl~~EGIFRvsG~~~~v~~Lr~~ln~g~~~~---~~Dvh~ 229 (512)
....++||++|+.++.. +.....||.+|.+|++|| +.+|+++|||||++|+..++++|++.||+|...+ ..|+|+
T Consensus 3 ~~~~~vFG~~L~~~~~~-~~~~~~vP~iv~~~i~~l-~~~gl~~eGIfR~~g~~~~i~~l~~~~~~~~~~~~~~~~d~~~ 80 (198)
T 1tx4_A 3 PLPNQQFGVSLQHLQEK-NPEQEPIPIVLRETVAYL-QAHALTTEGIFRRSANTQVVREVQQKYNMGLPVDFDQYNALHL 80 (198)
T ss_dssp CCTTCCTTSCHHHHHHH-STTCCSSCHHHHHHHHHH-HHHCTTCTTTTTSCCCHHHHHHHHHHHHTTCCCCGGGSSCTHH
T ss_pred CCCCCccCCcHHHHHhh-CCCCCCCCHHHHHHHHHH-HHhCCCCCCeeecCCcHHHHHHHHHHHhCCCCCCccccccchH
Confidence 34678999999998643 222348999999999998 6789999999999999999999999999997432 368999
Q ss_pred hHHHHHHHHHhCCCCCCCCCCHHHHHhhc------cHHHHHHHHHhCChhhHHHHHHHHHHHHHhhhccccCCCChhhhH
Q 010349 230 LAGLIKAWFRELPAGVLDPLSPEQVMQCQ------TEEDCLQLVRLLPPTESALLDWAINLMADVVQQENLNKMNARNVA 303 (512)
Q Consensus 230 vAsLLK~fLReLPePLL~~~l~e~~~~~~------~~e~~~~Ll~~LP~~Nr~lL~~Li~fL~~V~~~s~~NKMta~NLA 303 (512)
+|++||.|||+||+||+|.++|+.|+++. +.+.++.++.+||+.|+.+|+||+.||++|+++++.|||++.|||
T Consensus 81 ~a~lLK~flreLpePLi~~~l~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nLa 160 (198)
T 1tx4_A 81 PAVILKTFLRELPEPLLTFDLYPHVVGFLNIDESQRVPATLQVLQTLPEENYQVLRFLTAFLVQISAHSDQNKMTNTNLA 160 (198)
T ss_dssp HHHHHHHHHHHSSSCTTCGGGHHHHHTGGGSCGGGHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHTHHHHCCCHHHHH
T ss_pred HHHHHHHHHHHCCCcCCCHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHH
Confidence 99999999999999999999999999763 456789999999999999999999999999999999999999999
Q ss_pred HhhhcccccCCChhHHHHHHHHHHHHHHHHHHHHHhhcccccc
Q 010349 304 MVFAPNMTQMADPLTALMYAVQVMNFLKMLILRTLREREDSVV 346 (512)
Q Consensus 304 iVFaPnLlr~~d~~~~l~~~~~v~~~l~~LI~~~L~e~~~~if 346 (512)
+||||+|+|+.+....+........+++. |+++++.||
T Consensus 161 ~vf~P~Ll~~~~~~~~~~~~~~~~~~v~~-----LI~~~~~iF 198 (198)
T 1tx4_A 161 VVFGPNLLWAKDAAITLKAINPINTFTKF-----LLDHQGELF 198 (198)
T ss_dssp HHHHHHHCCCSSHHHHHHTHHHHHHHHHH-----HHHTHHHHC
T ss_pred hhhcccccCCCCccccHHHHHHHHHHHHH-----HHHhHHHhC
Confidence 99999999998766555444444555544 445556665
No 2
>1ow3_A RHO-GTPase-activating protein 1; complex, GTPase, GAP, transition state, gene regulation/signaling protein complex; HET: GDP; 1.80A {Homo sapiens} SCOP: a.116.1.1 PDB: 1rgp_A 2ngr_B*
Probab=100.00 E-value=9.7e-39 Score=315.00 Aligned_cols=191 Identities=24% Similarity=0.356 Sum_probs=160.8
Q ss_pred CCCCCcccccChhhhhhhcCCCCCCCCHHHHHHHHHHHhcCCCCcCCceecCCCchhHHHHHHHHhcCCCCC---CCChh
Q 010349 152 PSASATVFGVSTESMQLSFDSRGNSVPTILLLMQRHLYGQGGLQAEGIFRINGENSQEEYVRDQLNRGVIPD---GIDIH 228 (512)
Q Consensus 152 p~~~~~vFGv~Le~l~~~~~~~g~~VP~il~~~i~~L~e~~Gl~~EGIFRvsG~~~~v~~Lr~~ln~g~~~~---~~Dvh 228 (512)
+....++||++|+.++.. +..+..||.+|.+|++|| +.+|+++|||||++|+..++++|++.||+|...+ ..|+|
T Consensus 38 ~~~~~~vFG~~L~~~~~~-~~~~~~vP~iv~~~i~~l-~~~gl~~eGIfR~sG~~~~i~~L~~~~d~~~~~~~~~~~dv~ 115 (242)
T 1ow3_A 38 PPLPNQQFGVSLQHLQEK-NPEQEPIPIVLRETVAYL-QAHALTTEGIFRRSANTQVVREVQQKYNMGLPVDFDQYNELH 115 (242)
T ss_dssp -CCTTCCSSSCHHHHHHH-STTCCSSCHHHHHHHHHH-HHHCTTCTTTTTSCCCHHHHHHHHHHHHTTCCCCGGGSSCTH
T ss_pred CCCCCCccCCcHHHHHhh-cCCCCCCCHHHHHHHHHH-HHcCCCCCceeeeCCcHHHHHHHHHHHhcCCCCCcccccchH
Confidence 345688999999998643 223358999999999998 6789999999999999999999999999997443 35999
Q ss_pred hhHHHHHHHHHhCCCCCCCCCCHHHHHhhc------cHHHHHHHHHhCChhhHHHHHHHHHHHHHhhhccccCCCChhhh
Q 010349 229 CLAGLIKAWFRELPAGVLDPLSPEQVMQCQ------TEEDCLQLVRLLPPTESALLDWAINLMADVVQQENLNKMNARNV 302 (512)
Q Consensus 229 ~vAsLLK~fLReLPePLL~~~l~e~~~~~~------~~e~~~~Ll~~LP~~Nr~lL~~Li~fL~~V~~~s~~NKMta~NL 302 (512)
++|++||.|||+||+||||+++|+.|+++. +.+.++.++.+||+.|+.+|+||+.||++|+++++.|||++.||
T Consensus 116 ~va~lLK~flReLPePLl~~~ly~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NL 195 (242)
T 1ow3_A 116 LPAVILKTFLRELPEPLLTFDLYPHVVGFLNIDESQRVPATLQVLQTLPEENYQVLRFLTAFLVQISAHSDQNKMTNTNL 195 (242)
T ss_dssp HHHHHHHHHHHHSSSCTTCGGGHHHHHTGGGSCGGGHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHTHHHHCCCHHHH
T ss_pred HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhccCcCCCCHHHh
Confidence 999999999999999999999999999864 35678999999999999999999999999999999999999999
Q ss_pred HHhhhcccccCCChhHHHHHHHHHHHHHHHHHHHHHhhcccccccCC
Q 010349 303 AMVFAPNMTQMADPLTALMYAVQVMNFLKMLILRTLREREDSVVEHT 349 (512)
Q Consensus 303 AiVFaPnLlr~~d~~~~l~~~~~v~~~l~~LI~~~L~e~~~~if~~~ 349 (512)
|+||||+|+++.+....+........++ .+|+++++.||...
T Consensus 196 Aivf~P~Ll~~~~~~~~~~~~~~~~~~v-----~~LI~~~~~iF~~~ 237 (242)
T 1ow3_A 196 AVVFGPNLLWAKDAAITLKAINPINTFT-----KFLLDHQGELFPSP 237 (242)
T ss_dssp HHHHHHHHCCCSSHHHHHHTHHHHHHHH-----HHHHHTHHHHC---
T ss_pred HHhhcchhCCCCCccccHHHHHHHHHHH-----HHHHHHHHHHcCCC
Confidence 9999999999987665555444444444 45556678888654
No 3
>3msx_B RHO GTPase-activating protein 20; protein-proten complex, transition state, protein BI; HET: GDP; 1.65A {Homo sapiens}
Probab=100.00 E-value=2.2e-38 Score=303.29 Aligned_cols=182 Identities=21% Similarity=0.334 Sum_probs=152.3
Q ss_pred CCCcccccChhhhhhhcCCCCCCCCHHHHHHHHHHHhcCCCCcCCceecCCCchhHHHHHHHHhcCCC--CCCCChhhhH
Q 010349 154 ASATVFGVSTESMQLSFDSRGNSVPTILLLMQRHLYGQGGLQAEGIFRINGENSQEEYVRDQLNRGVI--PDGIDIHCLA 231 (512)
Q Consensus 154 ~~~~vFGv~Le~l~~~~~~~g~~VP~il~~~i~~L~e~~Gl~~EGIFRvsG~~~~v~~Lr~~ln~g~~--~~~~Dvh~vA 231 (512)
..+++||++|+.++. ...||.+|.+|++|| +++|+.+|||||++|+..++++|++.+|.|.. .+..|+|++|
T Consensus 8 ~~~~vFG~~L~~~~~-----~~~vP~~v~~~i~~l-~~~gl~~eGIfR~~g~~~~i~~l~~~~~~~~~~~~~~~d~~~va 81 (201)
T 3msx_B 8 MPGQLFGISLPNICE-----NDNLPKPVLDMLFFL-NQKGPLTKGIFRQSANVKSCRELKEKLNSGVEVHLDCESIFVIA 81 (201)
T ss_dssp --CCCTTSCHHHHSG-----GGCCCHHHHHHHHHH-HHHGGGSTTTTTSCCCHHHHHHHHHHHHHTCCCCTTSSCHHHHH
T ss_pred CCCCeeCCcHHHHhc-----CCCCCHHHHHHHHHH-HHhCCCCCCeeeeCCCHHHHHHHHHHhccCCCCCCCcccHHHHH
Confidence 568899999999863 125999999999998 77999999999999999999999999999863 4568999999
Q ss_pred HHHHHHHHhCCCCCCCCCCHHHHHhhc-------cHHHHHHHHHhCChhhHHHHHHHHHHHHHhhhccccCCCChhhhHH
Q 010349 232 GLIKAWFRELPAGVLDPLSPEQVMQCQ-------TEEDCLQLVRLLPPTESALLDWAINLMADVVQQENLNKMNARNVAM 304 (512)
Q Consensus 232 sLLK~fLReLPePLL~~~l~e~~~~~~-------~~e~~~~Ll~~LP~~Nr~lL~~Li~fL~~V~~~s~~NKMta~NLAi 304 (512)
++||.|||+||+||++.++|+.|+++. +.+.++.++.+||+.|+.+|+||+.||++|+++++.|||++.|||+
T Consensus 82 ~lLK~flreLp~pLl~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~LP~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nLa~ 161 (201)
T 3msx_B 82 SVLKDFLRNIPGSIFSSDLYDHWVSVMDQGNDEEKINTVQRLLDQLPRANVVLLRYLFGVLHNIEQHSSSNQMTAFNLAV 161 (201)
T ss_dssp HHHHHHHHTSTTTTTTGGGHHHHHHGGGSSSHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHTTHHHHCCCHHHHHH
T ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHHccccHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhccccCCCChhhhhh
Confidence 999999999999999999999999864 3445788999999999999999999999999999999999999999
Q ss_pred hhhcccccCCChhHH---HHHHHHHHHHHHHHHHHHHhhcccccc
Q 010349 305 VFAPNMTQMADPLTA---LMYAVQVMNFLKMLILRTLREREDSVV 346 (512)
Q Consensus 305 VFaPnLlr~~d~~~~---l~~~~~v~~~l~~LI~~~L~e~~~~if 346 (512)
||||+|+|+.+.... .....++..+++ +|+++++.||
T Consensus 162 vf~P~ll~~~~~~~~~~~~~~~~~~~~iv~-----~LI~~~~~IF 201 (201)
T 3msx_B 162 CVAPSILWPPASSSPELENEFTKKVSLLIQ-----FLIENCLRIF 201 (201)
T ss_dssp HHHHHHCCCCTTSCHHHHHHHHHHHHHHHH-----HHHHHHHHHC
T ss_pred hhhccccCCCCCCChHHHHHHHHHHHHHHH-----HHHHhhHhhC
Confidence 999999998764322 222233333344 4445556665
No 4
>3fk2_A Glucocorticoid receptor DNA-binding factor 1; structural genomics consortium, GTPase-activating protein, SGC, alternative splicing, anti-oncogene; 2.80A {Homo sapiens}
Probab=100.00 E-value=5.1e-38 Score=310.56 Aligned_cols=185 Identities=17% Similarity=0.322 Sum_probs=156.3
Q ss_pred CCCcccccChhhhhhhcCCCCCCCCHHHHHHHHHHHhcCCCCcCCceecCCCchhHHHHHHHHhcCCCC----CCCChhh
Q 010349 154 ASATVFGVSTESMQLSFDSRGNSVPTILLLMQRHLYGQGGLQAEGIFRINGENSQEEYVRDQLNRGVIP----DGIDIHC 229 (512)
Q Consensus 154 ~~~~vFGv~Le~l~~~~~~~g~~VP~il~~~i~~L~e~~Gl~~EGIFRvsG~~~~v~~Lr~~ln~g~~~----~~~Dvh~ 229 (512)
...++||++|+.++. .+..||.+|.+|++|| +.+|+.+|||||++|+..++++|++.||.|... .++|+|+
T Consensus 49 ~~~~vFGv~L~~~~~----~~~~vP~iv~~~i~~l-~~~gl~~eGIFR~sG~~~~v~~L~~~~d~~~~~~~~~~~~dvh~ 123 (246)
T 3fk2_A 49 WESNYFGVPLTTVVT----PEKPIPIFIERCIEYI-EATGLSTEGIYRVSGNKSEMESLQRQFDQDHNLDLAEKDFTVNT 123 (246)
T ss_dssp CCCSSTTSCGGGGCC----SSSCSCHHHHHHHHHH-HHHCTTSTTTTTSCCCHHHHHHHHHHHHHCTTCCSGGGTCCHHH
T ss_pred cCCCeeCCCHHHHhc----CCCCCChHHHHHHHHH-HHhCCCCCCeeEeCCcHHHHHHHHHHHhcCCCCCcccccCcHHH
Confidence 467899999999852 3458999999999998 678999999999999999999999999998643 2469999
Q ss_pred hHHHHHHHHHhCCCCCCCCCCHHHHHhhc-------cHHHHHHHHHhCChhhHHHHHHHHHHHHHhhhccccCCCChhhh
Q 010349 230 LAGLIKAWFRELPAGVLDPLSPEQVMQCQ-------TEEDCLQLVRLLPPTESALLDWAINLMADVVQQENLNKMNARNV 302 (512)
Q Consensus 230 vAsLLK~fLReLPePLL~~~l~e~~~~~~-------~~e~~~~Ll~~LP~~Nr~lL~~Li~fL~~V~~~s~~NKMta~NL 302 (512)
||++||.|||+||+||||+.+|+.|+++. +.+.++.++.+||+.|+.+|.||+.||++|+++++.|||++.||
T Consensus 124 va~lLK~fLReLPePLl~~~l~~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkMt~~NL 203 (246)
T 3fk2_A 124 VAGAMKSFFSELPDPLVPYNMQIDLVEAHKINDREQKLHALKEVLKKFPKENHEVFKYVISHLNKVSHNNKVNLMTSENL 203 (246)
T ss_dssp HHHHHHHHHHHSSSCSSCHHHHHHHHHHTTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHTTHHHHCCCHHHH
T ss_pred HHHHHHHHHHhCCCccCCHHHHHHHHHHhccCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhccCccCCchHHh
Confidence 99999999999999999999999999864 34567899999999999999999999999999999999999999
Q ss_pred HHhhhcccccCCCh-hHHHHHHHHHHHHHHHHHHHHHhhcccccccC
Q 010349 303 AMVFAPNMTQMADP-LTALMYAVQVMNFLKMLILRTLREREDSVVEH 348 (512)
Q Consensus 303 AiVFaPnLlr~~d~-~~~l~~~~~v~~~l~~LI~~~L~e~~~~if~~ 348 (512)
|+||||+|+|+... ...++.......++ ++|+++++.||..
T Consensus 204 Aivf~P~Llrp~~~~~~~~~~~~~~~~iv-----e~LI~~~~~iF~n 245 (246)
T 3fk2_A 204 SICFWPTLMRPDFSTMDALTATRTYQTII-----ELFIQQCPFFFYN 245 (246)
T ss_dssp HHHHHHHHHCCCSSSSCHHHHHHHHHHHH-----HHHHHTHHHHHC-
T ss_pred HHHhcccccCCCCccHHHHHHHHHHHHHH-----HHHHHhHHHhcCC
Confidence 99999999997543 33344444444444 4555666888854
No 5
>2ee4_A RHO GTPase activating protein 5 variant; all alpha protein, GTPase-activating protein for RHO family members, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2ee5_A
Probab=100.00 E-value=3.6e-38 Score=303.88 Aligned_cols=185 Identities=17% Similarity=0.334 Sum_probs=154.1
Q ss_pred CCCcccccChhhhhhhcCCCCCCCCHHHHHHHHHHHhcCCCCcCCceecCCCchhHHHHHHHHhcCCCCC----CCChhh
Q 010349 154 ASATVFGVSTESMQLSFDSRGNSVPTILLLMQRHLYGQGGLQAEGIFRINGENSQEEYVRDQLNRGVIPD----GIDIHC 229 (512)
Q Consensus 154 ~~~~vFGv~Le~l~~~~~~~g~~VP~il~~~i~~L~e~~Gl~~EGIFRvsG~~~~v~~Lr~~ln~g~~~~----~~Dvh~ 229 (512)
...++||++|+.++. .+..||.+|.+|++|| +.+|+.+|||||++|+..++++|++.||+|...+ ..|+|+
T Consensus 8 ~~~~~FG~~L~~~~~----~~~~vP~iv~~~i~~l-~~~gl~~eGIfR~~g~~~~i~~l~~~~~~~~~~~~~~~~~d~~~ 82 (209)
T 2ee4_A 8 WESNYFGMPLQDLVT----AEKPIPLFVEKCVEFI-EDTGLCTEGLYRVSGNKTDQDNIQKQFDQDHNINLVSMEVTVNA 82 (209)
T ss_dssp SCCSSSSSCHHHHSC----SSCCSCHHHHHHHHHH-HHTCSCCTTTTTSCCCHHHHHHHHHHHHHCTTCCHHHHTCCHHH
T ss_pred CCCCeeCCcHHHHHh----cCCCCChHHHHHHHHH-HHhCCCCCCccccCCCHHHHHHHHHHHhcCCCCCcccCCCCHHH
Confidence 357899999999852 3457999999999998 6799999999999999999999999999986432 479999
Q ss_pred hHHHHHHHHHhCCCCCCCCCCHHHHHhhc-------cHHHHHHHHHhCChhhHHHHHHHHHHHHHhhhccccCCCChhhh
Q 010349 230 LAGLIKAWFRELPAGVLDPLSPEQVMQCQ-------TEEDCLQLVRLLPPTESALLDWAINLMADVVQQENLNKMNARNV 302 (512)
Q Consensus 230 vAsLLK~fLReLPePLL~~~l~e~~~~~~-------~~e~~~~Ll~~LP~~Nr~lL~~Li~fL~~V~~~s~~NKMta~NL 302 (512)
+|++||.|||+||+||||+++|+.|+++. +.+.++.++.+||+.|+.+|+||+.||++|+++++.|||++.||
T Consensus 83 va~lLK~flreLPePLi~~~l~~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~~~~NkM~~~NL 162 (209)
T 2ee4_A 83 VAGALKAFFADLPDPLIPYSLHPELLEAAKIPDKTERLHALKEIVKKFHPVNYDVFRYVITHLNRVSQQHKINLMTADNL 162 (209)
T ss_dssp HHHHHHHHHHHSSSCSSCTTTHHHHHHHHSCSSHHHHHHHHHHHTTTSCTTHHHHHHHHHHHHHHHHHTHHHHCCCHHHH
T ss_pred HHHHHHHHHHhCCCccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhcccccCCCHHHH
Confidence 99999999999999999999999999764 24567889999999999999999999999999999999999999
Q ss_pred HHhhhcccccCCChhHH-HHHHHHHHHHHHHHHHHHHhhcccccccC
Q 010349 303 AMVFAPNMTQMADPLTA-LMYAVQVMNFLKMLILRTLREREDSVVEH 348 (512)
Q Consensus 303 AiVFaPnLlr~~d~~~~-l~~~~~v~~~l~~LI~~~L~e~~~~if~~ 348 (512)
|+||||+|+++...... +........ +.++|+++++.||.+
T Consensus 163 aivf~P~L~~~~~~~~~~l~~~~~~~~-----vve~LI~~~~~iF~~ 204 (209)
T 2ee4_A 163 SICFWPTLMRPDFENREFLSTTKIHQS-----VVETFIQQCQFFFYN 204 (209)
T ss_dssp HHHHHHHHSCCCCCSSCCSCCCTTHHH-----HHHHHHHTHHHHTTC
T ss_pred HHHhcccccCCCCccHHHHHHhHHHHH-----HHHHHHHhhHHHcCC
Confidence 99999999997543211 111111223 334555677888864
No 6
>2osa_A N-chimaerin; RHO-GAP, GTPase activation, structural genomics, structural genomics consortium, SGC, signaling protein; 1.80A {Homo sapiens}
Probab=100.00 E-value=1.6e-37 Score=297.95 Aligned_cols=183 Identities=22% Similarity=0.341 Sum_probs=150.9
Q ss_pred CCcccccChhhhhhhcCCCCCCCCHHHHHHHHHHHhcCCCCcCCceecCCCchhHHHHHHHHhcC-C--CC---CCCChh
Q 010349 155 SATVFGVSTESMQLSFDSRGNSVPTILLLMQRHLYGQGGLQAEGIFRINGENSQEEYVRDQLNRG-V--IP---DGIDIH 228 (512)
Q Consensus 155 ~~~vFGv~Le~l~~~~~~~g~~VP~il~~~i~~L~e~~Gl~~EGIFRvsG~~~~v~~Lr~~ln~g-~--~~---~~~Dvh 228 (512)
..++||++|+.++... +..||.+|.+|++|| +.+|+++|||||++|+..++++|++.||++ . .. ...|+|
T Consensus 5 ~~~vFG~~L~~~~~~~---~~~vP~iv~~~i~~l-~~~gl~~eGIfR~~g~~~~i~~l~~~~~~~~~~~d~~~~~~~d~~ 80 (202)
T 2osa_A 5 VKKVYSCDLTTLVKAH---TTKRPMVVDMCIREI-ESRGLNSEGLYRVSGFSDLIEDVKMAFDRDGEKADISVNMYEDIN 80 (202)
T ss_dssp --CCTTSCHHHHHHHH---TCSSCHHHHHHHHHH-HHHCTTSTTTTTSCCCHHHHHHHHHHHHHHGGGCCCSTTTCCCHH
T ss_pred CCCccCCChHHHHHHc---CCCCCcHHHHHHHHH-HHhCCCcCCeeeecCcHHHHHHHHHHHHcCCCccCCCccccccHH
Confidence 3579999999986432 457999999999998 678999999999999999999999999984 2 22 236999
Q ss_pred hhHHHHHHHHHhCCCCCCCCCCHHHHHhhc-------cHHHHHHHHHhCChhhHHHHHHHHHHHHHhhhccccCCCChhh
Q 010349 229 CLAGLIKAWFRELPAGVLDPLSPEQVMQCQ-------TEEDCLQLVRLLPPTESALLDWAINLMADVVQQENLNKMNARN 301 (512)
Q Consensus 229 ~vAsLLK~fLReLPePLL~~~l~e~~~~~~-------~~e~~~~Ll~~LP~~Nr~lL~~Li~fL~~V~~~s~~NKMta~N 301 (512)
++|++||.|||+||+||+|.++|+.|+++. +.+.++.++.+||+.|+.+|.||+.||++|+++++.|||++.|
T Consensus 81 ~va~lLK~flreLpePLl~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~v~~~~~~NkM~~~N 160 (202)
T 2osa_A 81 IITGALKLYFRDLPIPLITYDAYPKFIESAKIMDPDEQLETLHEALKLLPPAHCETLRYLMAHLKRVTLHEKENLMNAEN 160 (202)
T ss_dssp HHHHHHHHHHHTCSSCSSCTTTHHHHHHHHHCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHTHHHHCCCHHH
T ss_pred HHHHHHHHHHHhCCCccCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHhccccCCCCCHHH
Confidence 999999999999999999999999998763 2456789999999999999999999999999999999999999
Q ss_pred hHHhhhcccccCCChh--HHHHHHHHHHHHHHHHHHHHHhhcccccc
Q 010349 302 VAMVFAPNMTQMADPL--TALMYAVQVMNFLKMLILRTLREREDSVV 346 (512)
Q Consensus 302 LAiVFaPnLlr~~d~~--~~l~~~~~v~~~l~~LI~~~L~e~~~~if 346 (512)
||+||||+|+++++.. ..+........++ ++|+++++.||
T Consensus 161 La~vf~P~Ll~~~~~~~~~~~~~~~~~~~vv-----e~LI~~~~~iF 202 (202)
T 2osa_A 161 LGIVFGPTLMRSPELDAMAALNDIRYQRLVV-----ELLIKNEDILF 202 (202)
T ss_dssp HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH-----HHHHHTHHHHC
T ss_pred HHHHHccccCCCCCccHHHHHHHHHHHHHHH-----HHHHHcccccC
Confidence 9999999999986532 2232223333333 45556667665
No 7
>3iug_A RHO/CDC42/RAC GTPase-activating protein RICS; structural genomics consortium (SGC), GAP, alternative splicing, cell junction, cell membrane; 1.77A {Homo sapiens}
Probab=100.00 E-value=8.7e-38 Score=305.38 Aligned_cols=193 Identities=23% Similarity=0.376 Sum_probs=150.3
Q ss_pred CCCcccccChhhhhhhcCCCCCCCCHHHHHHHHHHHhcCCCCcCCceecCCCchhHHHHHHHHhcCCCC--C----CCCh
Q 010349 154 ASATVFGVSTESMQLSFDSRGNSVPTILLLMQRHLYGQGGLQAEGIFRINGENSQEEYVRDQLNRGVIP--D----GIDI 227 (512)
Q Consensus 154 ~~~~vFGv~Le~l~~~~~~~g~~VP~il~~~i~~L~e~~Gl~~EGIFRvsG~~~~v~~Lr~~ln~g~~~--~----~~Dv 227 (512)
..+++||++|++++. ..+..||.+|.+|++|| +++|+ +|||||++|+..++++|++.||.|... . ..|+
T Consensus 17 ~~~~vFG~~L~~~~~---~~~~~vP~iv~~~i~~i-~~~gl-~eGIfR~~G~~~~i~~L~~~~~~~~~~~~~~~~~~~dv 91 (229)
T 3iug_A 17 QGERVFGCDLGEHLL---NSGFEVPQVLQSCTAFI-ERYGI-VDGIYRLSGVASNIQRLRHEFDSEHVPDLTKEPYVQDI 91 (229)
T ss_dssp -CCCSTTSCHHHHHH---HHCCSSCHHHHHHHHHH-HHHCC-STTTTTSCCCHHHHHHHHHHHHTTCCCCTTSTTTTTCH
T ss_pred CCCCeECcchHHHHH---hcCCCCCHHHHHHHHHH-HHcCC-CCCCeecCCcHHHHHHHHHHHhcCCCCCccccccccch
Confidence 467899999998753 23557999999999998 67899 899999999999999999999998632 1 1499
Q ss_pred hhhHHHHHHHHHhCCCCCCCCCCHHHHHhhc-------cHHHHHHHHHhCChhhHHHHHHHHHHHHHhhhccccCCCChh
Q 010349 228 HCLAGLIKAWFRELPAGVLDPLSPEQVMQCQ-------TEEDCLQLVRLLPPTESALLDWAINLMADVVQQENLNKMNAR 300 (512)
Q Consensus 228 h~vAsLLK~fLReLPePLL~~~l~e~~~~~~-------~~e~~~~Ll~~LP~~Nr~lL~~Li~fL~~V~~~s~~NKMta~ 300 (512)
|+||++||.|||+||+||||.++|+.|+++. +.+.++.++.+||+.|+.+|+||+.||++|+++++.|||++.
T Consensus 92 h~va~lLK~fLreLPePLl~~~ly~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~ 171 (229)
T 3iug_A 92 HSVGSLCKLYFRELPNPLLTYQLYEKFSDAVSAATDEERLIKIHDVIQQLPPPHYRTLEFLMRHLSLLADYCSITNMHAK 171 (229)
T ss_dssp HHHHHHHHHHHHHCSSCTTCTTTHHHHHHHHTSSSHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHTTHHHHCCCHH
T ss_pred HHHHHHHHHHHHHCCCCCcCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhccCccCCChH
Confidence 9999999999999999999999999998763 234578899999999999999999999999999999999999
Q ss_pred hhHHhhhcccccCCChhHHH---HHHHHHHHHHHHHHHHHHhhcccccccCCCCC
Q 010349 301 NVAMVFAPNMTQMADPLTAL---MYAVQVMNFLKMLILRTLREREDSVVEHTPSS 352 (512)
Q Consensus 301 NLAiVFaPnLlr~~d~~~~l---~~~~~v~~~l~~LI~~~L~e~~~~if~~~p~~ 352 (512)
|||+||||+|+++.+..... ......+. .+..|..+|+++++.||.+....
T Consensus 172 NLAivf~P~Ll~~~~~~~~~~~~~~~~~~~~-~~~~vve~LI~~~~~iF~~~~~~ 225 (229)
T 3iug_A 172 NLAIVWAPNLLRSKQIESACFSGTAAFMEVR-IQSVVVEFILNHVDVLFSGRISM 225 (229)
T ss_dssp HHHHHHHHHHCCC--------------------CHHHHHHHHHTHHHHTC-----
T ss_pred HHHHHHhccccCCCcccccccchHHHHHHHH-HHHHHHHHHHHhHHHhCCCcHHh
Confidence 99999999999986432110 00000111 11234566677889999876443
No 8
>3byi_A RHO GTPase activating protein 15; BM046, arhgap15, structural genomics consortium, signaling protein; 2.25A {Homo sapiens}
Probab=100.00 E-value=8.1e-38 Score=302.45 Aligned_cols=185 Identities=21% Similarity=0.327 Sum_probs=154.0
Q ss_pred CCcccccChhhhhhhcCCCCCCCCHHHHHHHHHHHhcCCCCcCCceecCCCchhHHHHHHHHhcCCCC--C---CCChhh
Q 010349 155 SATVFGVSTESMQLSFDSRGNSVPTILLLMQRHLYGQGGLQAEGIFRINGENSQEEYVRDQLNRGVIP--D---GIDIHC 229 (512)
Q Consensus 155 ~~~vFGv~Le~l~~~~~~~g~~VP~il~~~i~~L~e~~Gl~~EGIFRvsG~~~~v~~Lr~~ln~g~~~--~---~~Dvh~ 229 (512)
..++||++|+.++.. .+..||.+|..|++|| +.+|+++|||||++|+..++++|++.+|+|... + ..|+|+
T Consensus 16 ~~~vFG~~L~~~~~~---~~~~vP~~v~~~i~~l-~~~gl~~eGIfR~~G~~~~i~~L~~~~~~~~~~~~~~~~~~dvh~ 91 (214)
T 3byi_A 16 KDQIFGSHLHKVCER---ENSTVPWFVKQCIEAV-EKRGLDVDGIYRVSGNLATIQKLRFIVNQEEKLNLDDSQWEDIHV 91 (214)
T ss_dssp CCCSTTSCHHHHHHH---HTCSSCHHHHHHHHHH-HHHTTTSTTTTTSCCCHHHHHHHHHHHHTTCCCCTTSGGGCSHHH
T ss_pred cCCccCCcHHHHHHH---cCCCCChHHHHHHHHH-HHhCCCCCCccccCCCHHHHHHHHHHHhcCCCCCCCcccccchHH
Confidence 467999999998642 3568999999999998 678999999999999999999999999998532 2 259999
Q ss_pred hHHHHHHHHHhCCCCCCCCCCHHHHHhhc-------cHHHHHHHHHhCChhhHHHHHHHHHHHHHhhhccccCCCChhhh
Q 010349 230 LAGLIKAWFRELPAGVLDPLSPEQVMQCQ-------TEEDCLQLVRLLPPTESALLDWAINLMADVVQQENLNKMNARNV 302 (512)
Q Consensus 230 vAsLLK~fLReLPePLL~~~l~e~~~~~~-------~~e~~~~Ll~~LP~~Nr~lL~~Li~fL~~V~~~s~~NKMta~NL 302 (512)
||++||.|||+||+||||+++|+.|+++. +.+.++.++.+||+.|+.+|.||+.||++|+++++.|||++.||
T Consensus 92 va~lLK~flreLPePLl~~~l~~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~v~~~s~~NkM~~~NL 171 (214)
T 3byi_A 92 VTGALKMFFRELPEPLFPYSFFEQFVEAIKKQDNNTRIEAVKSLVQKLPPPNRDTMKVLFGHLTKIVAKASKNLMSTQSL 171 (214)
T ss_dssp HHHHHHHHHHHSSSCSSCHHHHHHHHHHHTSSSHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHTHHHHCCCHHHH
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHcccCCCCCHHHh
Confidence 99999999999999999999999998764 24567899999999999999999999999999999999999999
Q ss_pred HHhhhcccccCCChhHH-HHHHHHHHHHHHHHHHHHHhhcccccccC
Q 010349 303 AMVFAPNMTQMADPLTA-LMYAVQVMNFLKMLILRTLREREDSVVEH 348 (512)
Q Consensus 303 AiVFaPnLlr~~d~~~~-l~~~~~v~~~l~~LI~~~L~e~~~~if~~ 348 (512)
|+||||+|+++...... .+..... ..|..+|+++++.||+.
T Consensus 172 a~vf~P~Ll~~~~~~~~~~~~~~~~-----~~vve~LI~~~~~iF~~ 213 (214)
T 3byi_A 172 GIVFGPTLLRAENETGNMAIHMVYQ-----NQIAELMLSEYSKIFGS 213 (214)
T ss_dssp HHHHHHHHHCCTTSSSCHHHHHHHH-----HHHHHHHHHTHHHHHC-
T ss_pred HHHhccccCCCCCccHHHHHHHHHH-----HHHHHHHHHHHHHhcCC
Confidence 99999999998654321 1111112 23445566777888854
No 9
>1pbw_A Rhogap domain, phosphatidylinositol 3-kinase; phosphotransferase, tpase activating protein, CDC42, phosphoinositide 3-kinase, SH3 domain; 2.00A {Homo sapiens} SCOP: a.116.1.1
Probab=100.00 E-value=5.4e-38 Score=304.46 Aligned_cols=187 Identities=17% Similarity=0.282 Sum_probs=144.9
Q ss_pred CCcccccChhhhhhhcCCCCCCCCHHHHHHHHHHHhcCCCCcCCceecCCCchhHHHHHHHHhcCC---CCCCCChhhhH
Q 010349 155 SATVFGVSTESMQLSFDSRGNSVPTILLLMQRHLYGQGGLQAEGIFRINGENSQEEYVRDQLNRGV---IPDGIDIHCLA 231 (512)
Q Consensus 155 ~~~vFGv~Le~l~~~~~~~g~~VP~il~~~i~~L~e~~Gl~~EGIFRvsG~~~~v~~Lr~~ln~g~---~~~~~Dvh~vA 231 (512)
+..+||++|+.++.+. ..+..||.+|.+|++|| +++|+++|||||++|+..+ ++|++.||+|. .....|+|+||
T Consensus 4 d~~~fGv~L~~l~~~~-~~~~~vP~iv~~~i~~l-~~~gl~~eGIfR~sG~~~~-~~l~~~~d~~~~~~~~~~~dv~~va 80 (216)
T 1pbw_A 4 DVEQQALTLPDLAEQF-APPDIAPPLLIKLVEAI-EKKGLECSTLYRTQSSSNL-AELRQLLDCDTPSVDLEMIDVHVLA 80 (216)
T ss_dssp --------CCCHHHHC-CTTSCSCHHHHHHHHHH-HHHHTTCTTTTSSCCSCCT-THHHHHSCSSSSCCCGGGBCHHHHH
T ss_pred ccccCCCcHHHHHhcc-CCCCCcCHHHHHHHHHH-HHcCCCCCCeeeCCChHHH-HHHHHHHHcCCCCCCccccCHHHHH
Confidence 5679999999986532 23458999999999999 5689999999999999999 99999999974 23568999999
Q ss_pred HHHHHHHHhCCCCCCCCCCHHHHHhhcc--------HHHHHHHHH--hCChhhHHHHHHHHHHHHHhhhccccCCCChhh
Q 010349 232 GLIKAWFRELPAGVLDPLSPEQVMQCQT--------EEDCLQLVR--LLPPTESALLDWAINLMADVVQQENLNKMNARN 301 (512)
Q Consensus 232 sLLK~fLReLPePLL~~~l~e~~~~~~~--------~e~~~~Ll~--~LP~~Nr~lL~~Li~fL~~V~~~s~~NKMta~N 301 (512)
++||.|||+||+|||++++|+.|+++.+ .+.++.++. +||+.|+.+|+||+.||++|+++++.|||++.|
T Consensus 81 ~lLK~flReLPePLl~~~ly~~~~~~~~~~~~~~~~~~~l~~ll~~~~LP~~n~~~L~~L~~~L~~V~~~~~~NkM~~~N 160 (216)
T 1pbw_A 81 DAFKRYLLDLPNPVIPAAVYSEMISLAPEVQSSEEYIQLLKKLIRSPSIPHQYWLTLQYLLKHFFKLSQTSSKNLLNARV 160 (216)
T ss_dssp HHHHHHHHTSSSCSSCHHHHHHHHHHGGGCCSHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHHHHHTHHHHCCCHHH
T ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHhcccccCCCHHH
Confidence 9999999999999999999999998642 345678888 999999999999999999999999999999999
Q ss_pred hHHhhhcccccCCChhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCC
Q 010349 302 VAMVFAPNMTQMADPLTALMYAVQVMNFLKMLILRTLREREDSVVEHTPS 351 (512)
Q Consensus 302 LAiVFaPnLlr~~d~~~~l~~~~~v~~~l~~LI~~~L~e~~~~if~~~p~ 351 (512)
||+||||+|+++.+...... .... .|..+|+++++.||...|.
T Consensus 161 LAivf~P~Ll~~~~~~~~~~--~~~~-----~vve~LI~~~~~iF~~~P~ 203 (216)
T 1pbw_A 161 LSEIFSPMLFRFSAASSDNT--ENLI-----KVIEILISTEWNERQPAPA 203 (216)
T ss_dssp HHHHHHHHHHTCSSCCHHHH--HHHH-----HHHHHHHHTTC--------
T ss_pred HHHHHhhhcCCCCCCchhhh--HHHH-----HHHHHHHhhhHHhcCCCCC
Confidence 99999999999876543321 2222 3445666788999988654
No 10
>3eap_A RHO GTPase-activating protein 11A; GAP, structural genomics consortium, GTPase activation, phosphoprotein, polymorphism hydrolase activator, SGC; 2.30A {Homo sapiens}
Probab=100.00 E-value=1.7e-37 Score=311.13 Aligned_cols=227 Identities=22% Similarity=0.368 Sum_probs=159.2
Q ss_pred cCCccccccccchhhhhhcccCCCcccCCCCCCC------CCCCCCcccccChhhhhhhcCCCCCCCCHHHHHHHHHHHh
Q 010349 117 SWPTNVRHVAHVTFDRFNGFLGLPVEFEPEVPRR------APSASATVFGVSTESMQLSFDSRGNSVPTILLLMQRHLYG 190 (512)
Q Consensus 117 g~~~~v~~la~v~~~rl~~~~glp~~~~p~~~~~------~p~~~~~vFGv~Le~l~~~~~~~g~~VP~il~~~i~~L~e 190 (512)
+|-.++..+|.+ .++.+..|++.+.......+ +....+.+||++|+.++......+..||.+|.+|+.|| +
T Consensus 19 ~~~~~~~~~~~~--~~l~~~~gi~~k~~~~~~~~~~~~~~~~~~~~~vFGv~L~~l~~~~~~~~~~iP~~l~~~~~~l-e 95 (271)
T 3eap_A 19 MWDQRLVRLALL--QHLRAFYGIKVKGVRGQCDRRRHETAATEIGGKIFGVPFNALPHSAVPEYGHIPSFLVDACTSL-E 95 (271)
T ss_dssp TSCHHHHHHHHH--HHHHHHHCCCC-------------------CCSSTTSCGGGSCEEEETTTEEEEHHHHHHHHHH-G
T ss_pred HhhhchHHHHHH--HHHHHHhcccccCCCccccccccccCCCCCCCCeeCCcHHHHHhhccCCCCCcChHHHHHHHHH-H
Confidence 455555555443 56667777766554221111 11245789999999986443334457999999999998 5
Q ss_pred cCCCCcCCceecCCCchhHHHHHHHHhcCCC-CCCCChhhhHHHHHHHHHhCCCCCCCCCCHHHHHhhcc------HHHH
Q 010349 191 QGGLQAEGIFRINGENSQEEYVRDQLNRGVI-PDGIDIHCLAGLIKAWFRELPAGVLDPLSPEQVMQCQT------EEDC 263 (512)
Q Consensus 191 ~~Gl~~EGIFRvsG~~~~v~~Lr~~ln~g~~-~~~~Dvh~vAsLLK~fLReLPePLL~~~l~e~~~~~~~------~e~~ 263 (512)
+ |+.+|||||++|+..++++|++.||.|.. ....|+|+||++||.|||+||+||||+++|+.|+++.+ ...+
T Consensus 96 ~-gl~~eGIfR~sG~~~~i~~L~~~~d~~~~~~~~~~~~~va~lLK~fLReLPePLl~~~ly~~~~~~~~~~~~~~~~~~ 174 (271)
T 3eap_A 96 D-HIHTEGLFRKSGSVIRLKALKNKVDHGEGCLSSAPPCDIAGLLKQFFRELPEPILPADLHEALLKAQQLGTEEKNKAT 174 (271)
T ss_dssp G-GTTC--------CHHHHHHHHHHHHHC-----CCCHHHHHHHHHHHHHHSSSCSSCGGGHHHHHHHTTSCHHHHHHHH
T ss_pred h-CCCCCCeeeeCCCHHHHHHHHHHHHcCCCCcccccHHHHHHHHHHHHHhCCcccCCHHHHHHHHHHHHHhHHHHHHHH
Confidence 4 79999999999999999999999999864 46689999999999999999999999999999998643 2335
Q ss_pred HHHHHhCChhhHHHHHHHHHHHHHhhhccccCCCChhhhHHhhhcccccCCChhHHH-HHHHHHHHHHHHHHHHHHhhcc
Q 010349 264 LQLVRLLPPTESALLDWAINLMADVVQQENLNKMNARNVAMVFAPNMTQMADPLTAL-MYAVQVMNFLKMLILRTLRERE 342 (512)
Q Consensus 264 ~~Ll~~LP~~Nr~lL~~Li~fL~~V~~~s~~NKMta~NLAiVFaPnLlr~~d~~~~l-~~~~~v~~~l~~LI~~~L~e~~ 342 (512)
+.++..||+.|+.+|.||+.||++|+++++.|||++.|||+||||+|+++.+....+ ......+.+. ..|.++|++++
T Consensus 175 ~~l~~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivf~P~Ll~~~~~~~~~~~~~~~~~~~~-~~vve~LI~~~ 253 (271)
T 3eap_A 175 LLLSCLLADHTVHVLRYFFNFLRNVSLRSSENKMDSSNLAVIFAPNLLQTSEGHEKMSSNTEKKLRLQ-AAVVQTLIDYA 253 (271)
T ss_dssp HHHHTTSCHHHHHHHHHHHHHHHHHHHTHHHHCCCHHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHH-HHHHHHHHHTG
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHhHhccCCCCccchhhhHHHHHHHH-HHHHHHHHHhH
Confidence 667889999999999999999999999999999999999999999999986532111 1111112222 24556777888
Q ss_pred cccccC
Q 010349 343 DSVVEH 348 (512)
Q Consensus 343 ~~if~~ 348 (512)
+.||.-
T Consensus 254 ~~IF~v 259 (271)
T 3eap_A 254 SDIGRV 259 (271)
T ss_dssp GGTTCC
T ss_pred HHHhCC
Confidence 999853
No 11
>3kuq_A RHO GTPase-activating protein 7; structural genomics consortium, GTPase activation, SGC, alternative splicing, cytoplasm, phosphoprotein; 2.30A {Homo sapiens}
Probab=100.00 E-value=2.6e-36 Score=295.07 Aligned_cols=158 Identities=23% Similarity=0.357 Sum_probs=142.8
Q ss_pred CCCcccccChhhhhhhcCCCCCCCCHHHHHHHHHHHhcCCCCcCCceecCCCchhHHHHHHHHhcCC---CCCCCChhhh
Q 010349 154 ASATVFGVSTESMQLSFDSRGNSVPTILLLMQRHLYGQGGLQAEGIFRINGENSQEEYVRDQLNRGV---IPDGIDIHCL 230 (512)
Q Consensus 154 ~~~~vFGv~Le~l~~~~~~~g~~VP~il~~~i~~L~e~~Gl~~EGIFRvsG~~~~v~~Lr~~ln~g~---~~~~~Dvh~v 230 (512)
..+++||++|+.++.. .+..||.+|.+|++|| +.+|+.+|||||++|+..+|++|++.++.+. ..+..|+|+|
T Consensus 16 ~~~~vFGv~L~~~~~~---~~~~vP~~v~~~i~~l-~~~gl~~eGIfR~sG~~~~i~~L~~~~d~~~~~~~~~~~~~~~v 91 (228)
T 3kuq_A 16 FQGSVFGVPLTVNVQR---TGQPLPQSIQQAMRYL-RNHCLDQVGLFRKSGVKSRIQALRQMNEGAIDCVNYEGQSAYDV 91 (228)
T ss_dssp CTTSSTTCCHHHHHHH---HSSSSCHHHHHHHHHH-HHHCTTSTTTTTSCCCHHHHHHHHHHHTBSSSCCCCTTCCHHHH
T ss_pred CCCCEECCchHHHHHH---cCCCCCHHHHHHHHHH-HHhCCCcCCeeecCCCHHHHHHHHHHHhcCCCcCCcccCCHHHH
Confidence 5688999999987643 3457999999999998 6789999999999999999999999998753 3467899999
Q ss_pred HHHHHHHHHhCCCCCCCCCCHHHHHhhc-------cHHHHHHHHHhCChhhHHHHHHHHHHHHHhhhccccCCCChhhhH
Q 010349 231 AGLIKAWFRELPAGVLDPLSPEQVMQCQ-------TEEDCLQLVRLLPPTESALLDWAINLMADVVQQENLNKMNARNVA 303 (512)
Q Consensus 231 AsLLK~fLReLPePLL~~~l~e~~~~~~-------~~e~~~~Ll~~LP~~Nr~lL~~Li~fL~~V~~~s~~NKMta~NLA 303 (512)
|++||.|||+||+||||+.+|+.|+++. +.+.++.++.+||+.|+.+|.||+.||++|+++++.|||++.|||
T Consensus 92 a~lLK~fLReLPePLl~~~l~~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLA 171 (228)
T 3kuq_A 92 ADMLKQYFRDLPEPLMTNKLSETFLQIYQYVPKDQRLQAIKAAIMLLPDENREVLQTLLYFLSDVTAAVKENQMTPTNLA 171 (228)
T ss_dssp HHHHHHHHHHSSSCTTCSSHHHHHHHHHHHSCGGGHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHTHHHHCCCHHHHH
T ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHhccccCCchhHhH
Confidence 9999999999999999999999998753 346788999999999999999999999999999999999999999
Q ss_pred HhhhcccccCCC
Q 010349 304 MVFAPNMTQMAD 315 (512)
Q Consensus 304 iVFaPnLlr~~d 315 (512)
+||||+||+...
T Consensus 172 ivf~P~Ll~~~~ 183 (228)
T 3kuq_A 172 VCLAPSLFHLNT 183 (228)
T ss_dssp HHHHHHHHTCCC
T ss_pred HHHhhhhcCCCC
Confidence 999999999753
No 12
>1f7c_A Rhogap protein; GTPase activating protein, RHO GTPase regulator, BH domain, signaling protein; 2.40A {Gallus gallus} SCOP: a.116.1.1
Probab=100.00 E-value=1.7e-36 Score=296.86 Aligned_cols=190 Identities=17% Similarity=0.296 Sum_probs=139.7
Q ss_pred CcccccChhhhhhhcCCCCCCCCHHHHHHHHHHHhcCCCCcCCceecCCCchhHHHHHH-HHhcCC----CC---CCCCh
Q 010349 156 ATVFGVSTESMQLSFDSRGNSVPTILLLMQRHLYGQGGLQAEGIFRINGENSQEEYVRD-QLNRGV----IP---DGIDI 227 (512)
Q Consensus 156 ~~vFGv~Le~l~~~~~~~g~~VP~il~~~i~~L~e~~Gl~~EGIFRvsG~~~~v~~Lr~-~ln~g~----~~---~~~Dv 227 (512)
.++||++|+..+.....-...+|.+|.+|++|| +++|+.+|||||++|+..+|++|++ .+|.|. .. ...|+
T Consensus 16 ~pvfgvpl~~~~~~~~~l~~~~p~iv~~ci~~l-e~~gl~~eGIfR~sG~~~~v~~l~~~~~d~~~~~~~~l~~~~~~dv 94 (231)
T 1f7c_A 16 EPVYNSNKDNQSEGTAQLDSIGFSIIKKCIHAV-ETRGINEQGLYRIVGVNSRVQKLLSILMDPKTATETETEICAEWEI 94 (231)
T ss_dssp ---------------CCSSHHHHHHHHHHHHHH-HHHCTTCTTTTTSCCCHHHHHHHHHHHHCC------CCCCCTTSCH
T ss_pred CCccCCcchhccccccccCCcCccHHHHHHHHH-HHhCCCCCCeeeeCCcHHHHHHHHHHHhCcCCCcccCccccccccH
Confidence 459999998764321111235789999999998 6789999999999999999999986 578763 12 24799
Q ss_pred hhhHHHHHHHHHhCCCCCCCCCCHHHHHhhc-------cHHHHHHHHHhCChhhHHHHHHHHHHHHHhhhccccCCCChh
Q 010349 228 HCLAGLIKAWFRELPAGVLDPLSPEQVMQCQ-------TEEDCLQLVRLLPPTESALLDWAINLMADVVQQENLNKMNAR 300 (512)
Q Consensus 228 h~vAsLLK~fLReLPePLL~~~l~e~~~~~~-------~~e~~~~Ll~~LP~~Nr~lL~~Li~fL~~V~~~s~~NKMta~ 300 (512)
|+||++||.|||+||+||||+++|+.|+++. +.+.++.++.+||+.|+.+|+||+.||++|+++++.|||++.
T Consensus 95 h~va~lLK~flReLPePLl~~~ly~~~~~~~~~~~~~~r~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~ 174 (231)
T 1f7c_A 95 KTITSALKTYLRMLPGPLMMYQFQRSFIKAAKLENQESRVSEIHSLVHRLPEKNRQMLHLLMNHLAKVADNHKQNLMTVA 174 (231)
T ss_dssp HHHHHHHHHHHHTSSSCTTCHHHHHHHHHHHTCSSHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHTHHHHCCCHH
T ss_pred HHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhcCCCCCCCHH
Confidence 9999999999999999999999999998763 345688999999999999999999999999999999999999
Q ss_pred hhHHhhhcccccCCChh-HHHHHHHHHHHHHHHHHHHHHhhcccccccCCCC
Q 010349 301 NVAMVFAPNMTQMADPL-TALMYAVQVMNFLKMLILRTLREREDSVVEHTPS 351 (512)
Q Consensus 301 NLAiVFaPnLlr~~d~~-~~l~~~~~v~~~l~~LI~~~L~e~~~~if~~~p~ 351 (512)
|||+||||+|+++.... ..++...... .+..+|+++++.||...+.
T Consensus 175 NLAivf~P~Ll~~~~~~~~~~~~~~~~~-----~vve~LI~~~~~iF~~~~~ 221 (231)
T 1f7c_A 175 NLGVVFGPTLLRPQEETVAAIMDIKFQN-----IVIEILIENHEKIFNTVPE 221 (231)
T ss_dssp HHHHHHHHHHSCC---CCSGGGGHHHHH-----HHHHHHHHTHHHHHHSCCC
T ss_pred HHHHHhccccCCCCcccHHHHHHHHHHH-----HHHHHHHHHHHHhCCCCCC
Confidence 99999999999985432 1222212122 3445666777999976643
No 13
>2ovj_A Mgcracgap, RAC GTPase-activating protein 1; signaling protein, structural genomics, structural genomics consortium, SGC; HET: 7PE; 1.49A {Homo sapiens}
Probab=100.00 E-value=7e-35 Score=279.71 Aligned_cols=178 Identities=21% Similarity=0.289 Sum_probs=145.0
Q ss_pred cChhhhhhhcCCCCCCCCHHHHHHHHHHHhcCCCCcCCceecCCCchhHHHHHHHHhcCCCC---CC-CChhhhHHHHHH
Q 010349 161 VSTESMQLSFDSRGNSVPTILLLMQRHLYGQGGLQAEGIFRINGENSQEEYVRDQLNRGVIP---DG-IDIHCLAGLIKA 236 (512)
Q Consensus 161 v~Le~l~~~~~~~g~~VP~il~~~i~~L~e~~Gl~~EGIFRvsG~~~~v~~Lr~~ln~g~~~---~~-~Dvh~vAsLLK~ 236 (512)
-.|++++ ...+..||.+|.+|++|| +++|+++|||||++|+..++++|++.||+|... .. .|+|++|++||.
T Consensus 4 g~L~~~~---~~~~~~vP~iv~~~i~~l-~~~gl~~eGIfR~sG~~~~i~~L~~~~~~~~~~~~~~~~~d~h~va~lLK~ 79 (201)
T 2ovj_A 4 GMLADFV---SQTSPMIPSIVVHCVNEI-EQRGLTETGLYRISGCDRTVKELKEKFLRVKTVPLLSKVDDIHAICSLLKD 79 (201)
T ss_dssp CCGGGGC---CSSSSCCCHHHHHHHHHH-HHHTTTSTTTTTSCCCHHHHHHHHHHHHTTCSCCCGGGCCCHHHHHHHHHH
T ss_pred CcHHHHh---cccCCCCChHHHHHHHHH-HHhCCCcCceeeeCCcHHHHHHHHHHHHcCCCCccccccCCHHHHHHHHHH
Confidence 3466553 345678999999999998 678999999999999999999999999998532 33 499999999999
Q ss_pred HHHhCCCCCCCCCCHHHHHhhc-------cHHHHHHHHHhCChhhHHHHHHHHHHHHHhhhccccCCCChhhhHHhhhcc
Q 010349 237 WFRELPAGVLDPLSPEQVMQCQ-------TEEDCLQLVRLLPPTESALLDWAINLMADVVQQENLNKMNARNVAMVFAPN 309 (512)
Q Consensus 237 fLReLPePLL~~~l~e~~~~~~-------~~e~~~~Ll~~LP~~Nr~lL~~Li~fL~~V~~~s~~NKMta~NLAiVFaPn 309 (512)
|||+||+||||+++|+.|+++. +.+.++.++.+||+.|+.+|.||+.||++|+++ +.|||++.|||+||||+
T Consensus 80 flreLpePLi~~~l~~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~-~~NkM~~~NLa~vf~P~ 158 (201)
T 2ovj_A 80 FLRNLKEPLLTFRLNRAFMEAAEITDEDNSIAAMYQAVGELPQANRDTLAFLMIHLQRVAQS-PHTKMDVANLAKVFGPT 158 (201)
T ss_dssp HHHTSSSCTTCTTTHHHHHHHHHCSSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHC-TTSCCCHHHHHHHHHHH
T ss_pred HHHhCCCCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHcc-cccCCCHHHHHHHhhhh
Confidence 9999999999999999999764 334678899999999999999999999999996 68999999999999999
Q ss_pred cccCCC----hhHHHHHHHHHHHHHHHHHHHHHhhcccccccC
Q 010349 310 MTQMAD----PLTALMYAVQVMNFLKMLILRTLREREDSVVEH 348 (512)
Q Consensus 310 Llr~~d----~~~~l~~~~~v~~~l~~LI~~~L~e~~~~if~~ 348 (512)
|++... +...+........++ .+|+++++.||..
T Consensus 159 ll~~~~~~~~~~~~~~~~~~~~~vv-----~~LI~~~~~if~~ 196 (201)
T 2ovj_A 159 IVAHAVPNPDPVTMLQDIKRQPKVV-----ERLLSLPLEYWSQ 196 (201)
T ss_dssp HTCCSSSSCCHHHHHHHHHHHHHHH-----HHHHHSCHHHHHG
T ss_pred hcCCCCCCCCHHHHHHHHHHHHHHH-----HHHHHhHHHHHHH
Confidence 998643 223333333333444 4445666666653
No 14
>2xs6_A Phosphatidylinositol 3-kinase regulatory subunit; structural genomics consortium, SGC, transferase; 2.09A {Homo sapiens}
Probab=100.00 E-value=2.6e-36 Score=293.11 Aligned_cols=176 Identities=16% Similarity=0.196 Sum_probs=131.6
Q ss_pred CCCcccccChhhhhhhcCCCCCCCCHHHHHHHHHHHhcCCCCcCCceecCCCchhHHHHHHHHhcCCCCCCCChhhhHHH
Q 010349 154 ASATVFGVSTESMQLSFDSRGNSVPTILLLMQRHLYGQGGLQAEGIFRINGENSQEEYVRDQLNRGVIPDGIDIHCLAGL 233 (512)
Q Consensus 154 ~~~~vFGv~Le~l~~~~~~~g~~VP~il~~~i~~L~e~~Gl~~EGIFRvsG~~~~v~~Lr~~ln~g~~~~~~Dvh~vAsL 233 (512)
...++||++|+.++.++. ....||.+|.+|++|| +++|+.+|||||++|+. ||+.++. ...+..|+|+||++
T Consensus 18 ~~~~vFGv~L~~l~~~~~-~~~~vP~iv~~~i~~l-~~~Gl~~eGIfR~sG~~-----lr~~~~~-~dl~~~dvh~va~l 89 (214)
T 2xs6_A 18 LYFQSMGLTLPDLPEQFS-PPDVAPPLLVKLVEAI-ERTGLDSESHYRPELPA-----PRTDWSL-SDVDQWDTAALADG 89 (214)
T ss_dssp -------CCCCCHHHHCC-TTCCSCHHHHHHHHHH-HHHCTTCSGGGCCSCCC-----CCCCCCC-TTGGGCCHHHHHHH
T ss_pred CCCcccCcCHHHHHHhhC-CCCCCCHHHHHHHHHH-HHhCCCCCCCeeeCHHH-----HHhcccc-CCCccCCHHHHHHH
Confidence 456799999999865322 3347999999999998 67899999999999998 4432211 12346899999999
Q ss_pred HHHHHHhCCCCCCCCCCHHHHHhhccH----HHHHHHHHhCChhhHHHHHHHHHHHHHhhhccccCCCChhhhHHhhhcc
Q 010349 234 IKAWFRELPAGVLDPLSPEQVMQCQTE----EDCLQLVRLLPPTESALLDWAINLMADVVQQENLNKMNARNVAMVFAPN 309 (512)
Q Consensus 234 LK~fLReLPePLL~~~l~e~~~~~~~~----e~~~~Ll~~LP~~Nr~lL~~Li~fL~~V~~~s~~NKMta~NLAiVFaPn 309 (512)
||.|||+||+||||+++|+.|+++.+. +.+..++.+||+.|+.+|+||+.||++|+++++.|||++.|||+||||+
T Consensus 90 LK~flReLPePLi~~~ly~~~i~~~~~~~~~~~~~~l~~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivf~P~ 169 (214)
T 2xs6_A 90 IKSFLLALPAPLVTPEASAEARRALREAAGPVGPALEPPTLPLHRALTLRFLLQHLGRVARRAPALGPAVRALGATFGPL 169 (214)
T ss_dssp HHHHHHHSSSCSSCHHHHHHHHHHHHCC--CCGGGGSTTTSCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHcccccCCCHHHHHHHHhhh
Confidence 999999999999999999999987532 2344788999999999999999999999999999999999999999999
Q ss_pred cccCCCh----------hHHHHHHHHHHHHHHHHHHHH
Q 010349 310 MTQMADP----------LTALMYAVQVMNFLKMLILRT 337 (512)
Q Consensus 310 Llr~~d~----------~~~l~~~~~v~~~l~~LI~~~ 337 (512)
|+|+.+. ...+........+++.||.+.
T Consensus 170 Ll~~~~~~~~~~~~~~~~~~~~d~~~~~~vve~LI~n~ 207 (214)
T 2xs6_A 170 LLRAPPPPSSPPPGGAPDGSEPSPDFPALLVEKLLQEH 207 (214)
T ss_dssp HHC------------------CCTTHHHHHHHHHHHHH
T ss_pred hcCCcccccccccccchhhhHHhHHHHHHHHHHHHhhh
Confidence 9998653 222322233455566666544
No 15
>3qis_A Inositol polyphosphate 5-phosphatase OCRL-1; DENT disease, RAC1, RAB gtpases, APPL1, endocytic PATH golgi complex, hydrolase-protein binding complex; 2.30A {Homo sapiens} PDB: 2qv2_A
Probab=100.00 E-value=5.4e-34 Score=296.93 Aligned_cols=166 Identities=17% Similarity=0.235 Sum_probs=137.4
Q ss_pred CCCCHHHHHHHHHHHhcCCCCcCCceecCCCchhHHHHHHHHhcCCCCC-CCChhhhHHHHHHHHHhCCCCCCCCCCHHH
Q 010349 175 NSVPTILLLMQRHLYGQGGLQAEGIFRINGENSQEEYVRDQLNRGVIPD-GIDIHCLAGLIKAWFRELPAGVLDPLSPEQ 253 (512)
Q Consensus 175 ~~VP~il~~~i~~L~e~~Gl~~EGIFRvsG~~~~v~~Lr~~ln~g~~~~-~~Dvh~vAsLLK~fLReLPePLL~~~l~e~ 253 (512)
..||.+|.+|++|| +++|+.+|||||++|+..++++|++.||.|.... ..|+|++|++||.|||+||+||||+.+|+.
T Consensus 197 ~~iP~~v~~~i~~l-~~~Gl~~eGIFR~~G~~~~v~~L~~~~d~~~~~~~~~dvh~va~lLK~fLReLPePLi~~~ly~~ 275 (366)
T 3qis_A 197 LQVPKEIWLLVDHL-FKYACHQEDLFQTPGMQEELQQIIDCLDTSIPETIPGSNHSVAEALLIFLEALPEPVICYELYQR 275 (366)
T ss_dssp CSSCHHHHHHHHHH-HHHCTTCTTTTTSCCCHHHHHHHHHHHHHCCCSSCCSCHHHHHHHHHHHHHHCSSCSSCHHHHHH
T ss_pred CCcChHHHHHHHHH-HhcCCCCCCeEeCCCCHHHHHHHHHHHcCCCCCccccCHHHHHHHHHHHHHhCCCCCCcHHHHHH
Confidence 48999999999999 5699999999999999999999999999987543 459999999999999999999999999999
Q ss_pred HHhhcc-HHHHHHHHHhCChhhHHHHHHHHHHHHHhhhccccCCCChhhhHHhhhcccccCCChhHHHHHHHHHHHHHHH
Q 010349 254 VMQCQT-EEDCLQLVRLLPPTESALLDWAINLMADVVQQENLNKMNARNVAMVFAPNMTQMADPLTALMYAVQVMNFLKM 332 (512)
Q Consensus 254 ~~~~~~-~e~~~~Ll~~LP~~Nr~lL~~Li~fL~~V~~~s~~NKMta~NLAiVFaPnLlr~~d~~~~l~~~~~v~~~l~~ 332 (512)
|+++.+ .+.++.++.+||+.|+.+|.||+.||++|+++++.|||++.|||+||||+|+|+++...... .....+....
T Consensus 276 ~~~~~~~~~~~~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLA~vf~P~Llr~~~~~~~~~-~~~~~~~~v~ 354 (366)
T 3qis_A 276 CLDSAYDPRICRQVISQLPRCHRNVFRYLMAFLRELLKFSEYNSVNANMIATLFTSLLLRPPPNLMARQ-TPSDRQRAIQ 354 (366)
T ss_dssp HHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHTTHHHHCCCHHHHHHHHHHHHSCCCC---------CHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhccccCCCHHHHHHHHhhhcccCCCcchhhh-hHHHHHHHHH
Confidence 998754 45678899999999999999999999999999999999999999999999999976432211 1122223334
Q ss_pred HHHHHHhhcc
Q 010349 333 LILRTLRERE 342 (512)
Q Consensus 333 LI~~~L~e~~ 342 (512)
+|.++|++..
T Consensus 355 fi~~fL~~~~ 364 (366)
T 3qis_A 355 FLLGFLLGSE 364 (366)
T ss_dssp HHHHHHC---
T ss_pred HHHHHhccCC
Confidence 5556666554
No 16
>3cxl_A N-chimerin; SH2, RHO-GAP, structural genomics consortium, SGC, gtpas activation, metal-binding, phorbol-ester binding, SH2 domai finger; 2.60A {Homo sapiens} PDB: 1xa6_A
Probab=100.00 E-value=1.6e-33 Score=301.19 Aligned_cols=183 Identities=23% Similarity=0.370 Sum_probs=151.7
Q ss_pred CCcccccChhhhhhhcCCCCCCCCHHHHHHHHHHHhcCCCCcCCceecCCCchhHHHHHHHHhcCC---CC---CCCChh
Q 010349 155 SATVFGVSTESMQLSFDSRGNSVPTILLLMQRHLYGQGGLQAEGIFRINGENSQEEYVRDQLNRGV---IP---DGIDIH 228 (512)
Q Consensus 155 ~~~vFGv~Le~l~~~~~~~g~~VP~il~~~i~~L~e~~Gl~~EGIFRvsG~~~~v~~Lr~~ln~g~---~~---~~~Dvh 228 (512)
...+||++|+.++.. .+..||.+|..|+++| +.+|+.+|||||++|+..+|++|++.||++. .. ...|+|
T Consensus 266 ~~~vFG~~L~~~~~~---~~~~vP~iv~~~i~~l-e~~gl~~eGIfR~sG~~~~i~~L~~~~d~~~~~~~~~~~~~~dv~ 341 (463)
T 3cxl_A 266 VKKVYSCDLTTLVKA---HTTKRPMVVDMCIREI-ESRGLNSEGLYRVSGFSDLIEDVKMAFDRDGEKADISVNMYEDIN 341 (463)
T ss_dssp CCCCTTSCHHHHHHH---HTCSSCHHHHHHHHHH-HHHCSCSTTTTTSCCCHHHHHHHHHHHHHHGGGCCCSTTTCCCHH
T ss_pred cccccccccchhhhc---cCCCCCeeHHHHHHHH-HhcCCCCCceeEecCCHHHHHHHHHHHHhcCCcCCcccccCCCcc
Confidence 467999999988642 3458999999999998 6789999999999999999999999999852 22 236999
Q ss_pred hhHHHHHHHHHhCCCCCCCCCCHHHHHhhc-------cHHHHHHHHHhCChhhHHHHHHHHHHHHHhhhccccCCCChhh
Q 010349 229 CLAGLIKAWFRELPAGVLDPLSPEQVMQCQ-------TEEDCLQLVRLLPPTESALLDWAINLMADVVQQENLNKMNARN 301 (512)
Q Consensus 229 ~vAsLLK~fLReLPePLL~~~l~e~~~~~~-------~~e~~~~Ll~~LP~~Nr~lL~~Li~fL~~V~~~s~~NKMta~N 301 (512)
+||++||.|||+||+||||+++|+.|+++. +.+.++.++.+||+.|+.+|.||+.||++|+++++.|||++.|
T Consensus 342 ~va~lLK~flReLPePLi~~~ly~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~~~~NkM~~~N 421 (463)
T 3cxl_A 342 IITGALKLYFRDLPIPLITYDAYPKFIESAKIMDPDEQLETLHEALKLLPPAHCETLRYLMAHLKRVTLHEKENLMNAEN 421 (463)
T ss_dssp HHHHHHHHHHHHCSSCSSCTTTHHHHHHHHHCCCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHTHHHHCCCHHH
T ss_pred hhhhHHHHHHHhcCCCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhcccccCCCHHH
Confidence 999999999999999999999999999864 3456789999999999999999999999999999999999999
Q ss_pred hHHhhhcccccCCCh--hHHHHHHHHHHHHHHHHHHHHHhhcccccc
Q 010349 302 VAMVFAPNMTQMADP--LTALMYAVQVMNFLKMLILRTLREREDSVV 346 (512)
Q Consensus 302 LAiVFaPnLlr~~d~--~~~l~~~~~v~~~l~~LI~~~L~e~~~~if 346 (512)
||+||||+|+++++. ...+....... .|.++|+++++.||
T Consensus 422 LAivf~P~Ll~~~~~~~~~~~~~~~~~~-----~vve~LI~~~~~iF 463 (463)
T 3cxl_A 422 LGIVFGPTLMRSPELDAMAALNDIRYQR-----LVVELLIKNEDILF 463 (463)
T ss_dssp HHHHHHHHHCCCCCSCTTGGGGGHHHHH-----HHHHHHHHTHHHHC
T ss_pred HHHHhhccccCCCCccHHHHHHHHHHHH-----HHHHHHHhchhhcC
Confidence 999999999998653 22222222222 33345556667766
No 17
>2qme_I CRIB domain of the serine/threonine-protein kinas; GTPase RAC3, small GTP binding protein, P21 RAC, RAS-related botulinum toxin substrate 3; HET: GCP; 1.75A {Homo sapiens}
Probab=79.61 E-value=0.44 Score=33.02 Aligned_cols=30 Identities=43% Similarity=0.875 Sum_probs=20.5
Q ss_pred cccCCccccccccchhhhhhc-ccCCCcccC
Q 010349 115 EISWPTNVRHVAHVTFDRFNG-FLGLPVEFE 144 (512)
Q Consensus 115 ~~g~~~~v~~la~v~~~rl~~-~~glp~~~~ 144 (512)
+|+.|++++|+.||.++...+ +.|+|.++.
T Consensus 1 ~Is~Ptnf~H~~Hvg~d~~tG~~~glp~~W~ 31 (36)
T 2qme_I 1 EISLPSDFEHTIHVGFDAVTGEFTGMPEQWA 31 (36)
T ss_dssp CBCCCEEEEEEEEECCBTTTTBCC-------
T ss_pred CCcCCCCCCCeeEcccCCCCCcccCCCHHHH
Confidence 588999999999999998776 778776554
No 18
>2odb_B Serine/threonine-protein kinase PAK 6; small GTPase, CRIB, protein-protein complex, structu genomics, structural genomics consortium, SGC; HET: GCP; 2.40A {Homo sapiens}
Probab=78.28 E-value=0.37 Score=33.19 Aligned_cols=29 Identities=48% Similarity=0.877 Sum_probs=24.7
Q ss_pred cccCCccccccccchhhhhhc-ccCCCccc
Q 010349 115 EISWPTNVRHVAHVTFDRFNG-FLGLPVEF 143 (512)
Q Consensus 115 ~~g~~~~v~~la~v~~~rl~~-~~glp~~~ 143 (512)
+|++|++++|+.||.++...+ +.|+|.++
T Consensus 1 ~Is~Ptnf~H~~Hvg~d~~tG~f~Glp~eW 30 (35)
T 2odb_B 1 EISAPQNFQHRVHTSFDPKEGKFVGLPPQW 30 (35)
T ss_dssp CBCCCEEEEEEEEEEEETTTTEEESCCHHH
T ss_pred CCcCCCCCcCeeeeeECCCCCcccCCCHHH
Confidence 578999999999999998877 88887554
No 19
>1f3m_A Serine/threonine-protein kinase PAK-alpha; kinase domain, autoinhibitory fragment, homodimer, transferase; 2.30A {Homo sapiens} SCOP: j.66.1.1 PDB: 1e0a_B* 1ees_B
Probab=64.66 E-value=1.2 Score=36.30 Aligned_cols=59 Identities=25% Similarity=0.474 Sum_probs=36.5
Q ss_pred cccccCCccccccccchhhhhhc-ccCCCcccCCCCCCCCCCCCCcccccChhhhhhhcCCCCCCCCHHHHHHHHHH
Q 010349 113 AMEISWPTNVRHVAHVTFDRFNG-FLGLPVEFEPEVPRRAPSASATVFGVSTESMQLSFDSRGNSVPTILLLMQRHL 188 (512)
Q Consensus 113 ~~~~g~~~~v~~la~v~~~rl~~-~~glp~~~~p~~~~~~p~~~~~vFGv~Le~l~~~~~~~g~~VP~il~~~i~~L 188 (512)
.++||+|+++.|+.||.++...+ +.|+|.++...+. --|++-+++. .-|.+|..++++.
T Consensus 3 ~~~Is~Ptnf~H~~HVg~D~~tG~~~GlP~eW~~ll~---------~sGIs~~e~~--------~np~~v~dvl~f~ 62 (80)
T 1f3m_A 3 RPEISLPSDFEHTIHVGFDAVTGEFTGMPEQWARLLQ---------TSNITKSEQK--------KNPQAVLDVLEFY 62 (80)
T ss_dssp ------CCSSEEEEEEEEETTTTEEESCCHHHHHHHH---------TSCCCHHHHH--------HCHHHHHHHHHHH
T ss_pred CCccCCCCCCCCeeecccCCCCCccCCCCHHHHHHHH---------HcCCCHHHHH--------HCHHHHHHHHHHh
Confidence 57899999999999999998777 7788766643221 1244444442 2578888888764
No 20
>2ov2_I Serine/threonine-protein kinase PAK 4; GTPase RAC3, small GTP binding protein, P21 RAC, RAS-related botulinum toxin substrate 3, signalling protein; HET: GCP; 2.10A {Homo sapiens}
Probab=62.72 E-value=2.3 Score=29.19 Aligned_cols=31 Identities=42% Similarity=0.762 Sum_probs=25.6
Q ss_pred cccCCccccccccchhhhhhc-ccCCCcccCC
Q 010349 115 EISWPTNVRHVAHVTFDRFNG-FLGLPVEFEP 145 (512)
Q Consensus 115 ~~g~~~~v~~la~v~~~rl~~-~~glp~~~~p 145 (512)
+|+.|+++.|+.||.|+.-.+ +.|+|.++..
T Consensus 1 ~IS~Ptnf~H~~Hvg~d~~tg~~~Glp~eW~~ 32 (35)
T 2ov2_I 1 EISAPSNFEHRVHTGFDQHEQKFTGLPRQWQS 32 (35)
T ss_dssp CBCCCEEEEEEEEEEEETTTTEEESCCGGGTT
T ss_pred CCcCCCCCcCeeeeeeCCCCCcccCCCHHHHH
Confidence 478899999999999997664 8899877653
No 21
>1cee_B Wiskott-aldrich syndrome protein WAsp; CDC42 actin regulator GTPase and the GTPase binding domain of ITS effector WAsp; HET: GCP; NMR {Homo sapiens}
Probab=53.35 E-value=4 Score=31.20 Aligned_cols=27 Identities=37% Similarity=0.674 Sum_probs=22.2
Q ss_pred cccccccCCccccccccchhhhhhccc
Q 010349 111 LCAMEISWPTNVRHVAHVTFDRFNGFL 137 (512)
Q Consensus 111 ~~~~~~g~~~~v~~la~v~~~rl~~~~ 137 (512)
+..+.|+-|+++.|++||.|+.-.++.
T Consensus 4 ~~k~~Is~Ptnf~Hv~HvG~d~~~gf~ 30 (59)
T 1cee_B 4 ISKADIGAPSGFKHVSHVGWDPQNGFD 30 (59)
T ss_dssp CCTTTSCCCCCCEEEEEECCCTTTCCC
T ss_pred CCCCcccCCCCCCCcceeccCCCCCcc
Confidence 457899999999999999888655544
No 22
>2p4p_A Hypothetical protein HD1797; CORC_HLYC, PFAM: PF03471, structural GE PSI-2, protein structure initiative, midwest center for STR genomics; HET: MLY MSE; 1.80A {Haemophilus ducreyi} SCOP: d.145.1.4
Probab=20.23 E-value=91 Score=24.69 Aligned_cols=48 Identities=23% Similarity=0.365 Sum_probs=36.3
Q ss_pred cCCceecCCCchhHHHHHHHHhcCCCCCCCChhhhHHHHHHHHHhCCCC
Q 010349 196 AEGIFRINGENSQEEYVRDQLNRGVIPDGIDIHCLAGLIKAWFRELPAG 244 (512)
Q Consensus 196 ~EGIFRvsG~~~~v~~Lr~~ln~g~~~~~~Dvh~vAsLLK~fLReLPeP 244 (512)
.+|-|++.|.. .+..+.+.|+-..+++..+..++|+++-..|..+|..
T Consensus 7 ~dg~~~v~G~~-~l~dl~~~l~~~~l~~~~~~~Tl~G~i~~~lg~iP~~ 54 (86)
T 2p4p_A 7 NEDSWLIDGAT-PLEDVMRALNIHTFPRDENYETIGGFMMYMLRXIPXX 54 (86)
T ss_dssp CCSEEEEETTS-BHHHHHHHTTCCCSCCSCSSCBHHHHHHHHHCSCCCT
T ss_pred CCCEEEEEccC-CHHHHHHHhCCCCCCcCCCCccHHHHHHHHhCCCCCC
Confidence 57889999975 4667888877642333357889999999999999863
Done!