Query 010352
Match_columns 512
No_of_seqs 144 out of 1635
Neff 9.6
Searched_HMMs 46136
Date Thu Mar 28 23:31:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010352.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010352hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1289 Amino acid transporter 100.0 1E-61 2.3E-66 476.2 40.3 490 2-508 31-524 (550)
2 TIGR00907 2A0304 amino acid pe 100.0 1.8E-60 4E-65 495.4 48.8 480 9-501 2-482 (482)
3 PRK15049 L-asparagine permease 100.0 4.9E-56 1.1E-60 460.8 41.0 439 15-496 24-471 (499)
4 TIGR03428 ureacarb_perm permea 100.0 2.7E-54 5.9E-59 447.4 49.2 458 8-487 2-472 (475)
5 PRK10249 phenylalanine transpo 100.0 1.3E-54 2.9E-59 447.0 40.3 449 1-494 1-456 (458)
6 TIGR00906 2A0303 cationic amin 100.0 1.5E-53 3.1E-58 446.1 40.5 443 12-499 21-556 (557)
7 PRK11387 S-methylmethionine tr 100.0 1.9E-53 4.2E-58 440.6 39.4 406 15-459 10-428 (471)
8 PRK10836 lysine transporter; P 100.0 1.8E-52 4E-57 435.0 40.2 421 11-462 7-438 (489)
9 PRK11357 frlA putative fructos 100.0 3.1E-52 6.7E-57 429.4 39.5 404 14-459 3-408 (445)
10 PRK10238 aromatic amino acid t 100.0 8E-52 1.7E-56 426.1 39.7 411 14-463 7-423 (456)
11 PRK10580 proY putative proline 100.0 2.1E-51 4.6E-56 424.0 41.9 439 12-497 2-450 (457)
12 COG0833 LysP Amino acid transp 100.0 3.7E-52 8E-57 410.2 34.0 449 16-493 41-500 (541)
13 PRK10746 putative transport pr 100.0 1.8E-51 3.9E-56 423.3 40.6 410 14-462 5-424 (461)
14 TIGR01773 GABAperm gamma-amino 100.0 1.9E-51 4.2E-56 424.3 39.9 438 14-496 7-451 (452)
15 TIGR00913 2A0310 amino acid pe 100.0 1.7E-51 3.6E-56 428.0 38.8 422 18-471 1-440 (478)
16 PRK10655 potE putrescine trans 100.0 6E-51 1.3E-55 419.2 42.1 396 16-455 3-401 (438)
17 TIGR00908 2A0305 ethanolamine 100.0 8.6E-51 1.9E-55 418.5 42.8 431 14-498 2-434 (442)
18 PRK10644 arginine:agmatin anti 100.0 1.8E-50 3.9E-55 416.0 43.7 429 15-499 4-434 (445)
19 PRK11049 D-alanine/D-serine/gl 100.0 9E-51 1.9E-55 420.1 40.0 439 14-497 15-464 (469)
20 KOG1287 Amino acid transporter 100.0 1.2E-51 2.5E-56 405.6 31.3 408 12-462 5-416 (479)
21 TIGR00905 2A0302 transporter, 100.0 5.8E-50 1.3E-54 414.8 42.6 407 16-459 4-413 (473)
22 TIGR03813 put_Glu_GABA_T putat 100.0 8.8E-50 1.9E-54 413.9 42.6 456 19-506 1-469 (474)
23 TIGR00911 2A0308 L-type amino 100.0 2E-49 4.3E-54 414.1 39.2 409 13-462 36-447 (501)
24 COG1113 AnsP Gamma-aminobutyra 100.0 9.6E-50 2.1E-54 385.2 31.6 439 13-497 7-453 (462)
25 PRK10197 gamma-aminobutyrate t 100.0 5.6E-49 1.2E-53 403.8 39.3 398 29-463 2-405 (446)
26 PRK10435 cadB lysine/cadaverin 100.0 2.4E-48 5.1E-53 398.6 41.5 394 16-457 2-402 (435)
27 TIGR00909 2A0306 amino acid tr 100.0 2.3E-48 5E-53 399.6 41.0 418 17-492 1-428 (429)
28 TIGR03810 arg_ornith_anti argi 100.0 4.2E-48 9.1E-53 400.4 41.6 407 19-459 1-408 (468)
29 TIGR00910 2A0307_GadC glutamat 100.0 6.8E-48 1.5E-52 400.3 41.6 445 18-497 3-464 (507)
30 PRK11021 putative transporter; 100.0 7E-48 1.5E-52 392.8 39.5 382 21-459 1-382 (410)
31 KOG1286 Amino acid transporter 100.0 2.7E-47 5.9E-52 390.0 26.3 427 14-468 25-468 (554)
32 PRK15238 inner membrane transp 100.0 9.3E-45 2E-49 377.9 41.8 461 15-499 3-493 (496)
33 TIGR00930 2a30 K-Cl cotranspor 100.0 3.8E-45 8.3E-50 398.1 37.0 422 16-459 73-517 (953)
34 PF13520 AA_permease_2: Amino 100.0 1.1E-44 2.4E-49 372.3 35.8 414 21-475 1-419 (426)
35 COG0531 PotE Amino acid transp 100.0 1.3E-42 2.8E-47 361.5 38.4 395 11-438 4-400 (466)
36 PF00324 AA_permease: Amino ac 100.0 3.4E-44 7.3E-49 373.0 15.6 414 27-464 3-433 (478)
37 TIGR00837 araaP aromatic amino 100.0 1E-27 2.2E-32 242.5 28.6 374 28-449 4-378 (381)
38 KOG2082 K+/Cl- cotransporter K 99.9 3.2E-25 6.9E-30 221.9 30.4 417 39-492 132-644 (1075)
39 KOG1288 Amino acid transporter 99.9 4.3E-23 9.4E-28 205.3 24.4 411 20-459 66-502 (945)
40 PHA02764 hypothetical protein; 99.9 4.9E-20 1.1E-24 168.7 22.4 281 11-376 4-285 (399)
41 TIGR00912 2A0309 spore germina 99.9 1.1E-18 2.5E-23 174.9 34.1 288 19-351 1-293 (359)
42 PF03222 Trp_Tyr_perm: Tryptop 99.8 2E-17 4.4E-22 165.9 37.4 388 19-454 1-389 (394)
43 KOG2083 Na+/K+ symporter [Inor 99.8 2.3E-19 4.9E-24 177.8 21.8 414 17-459 26-446 (643)
44 PRK10483 tryptophan permease; 99.8 1.5E-16 3.2E-21 158.1 36.8 394 15-456 5-399 (414)
45 TIGR00796 livcs branched-chain 99.8 9.5E-17 2.1E-21 158.4 33.4 340 33-438 7-365 (378)
46 PRK09664 tryptophan permease T 99.8 6.3E-16 1.4E-20 153.4 34.2 392 22-458 10-402 (415)
47 PRK15132 tyrosine transporter 99.8 4.5E-15 9.7E-20 148.3 36.2 385 22-457 4-389 (403)
48 TIGR00814 stp serine transport 99.8 4.3E-15 9.3E-20 148.8 33.6 294 24-354 6-311 (397)
49 COG0814 SdaC Amino acid permea 99.7 5.8E-13 1.2E-17 134.8 34.4 258 16-297 4-265 (415)
50 PRK13629 threonine/serine tran 99.6 4.3E-12 9.3E-17 126.2 37.0 369 27-424 25-411 (443)
51 PF03845 Spore_permease: Spore 99.4 8.5E-10 1.8E-14 108.8 31.6 286 20-351 1-289 (320)
52 KOG1303 Amino acid transporter 99.3 1.5E-09 3.2E-14 109.3 28.9 356 17-426 34-399 (437)
53 PF01235 Na_Ala_symp: Sodium:a 99.2 5.6E-08 1.2E-12 96.7 28.5 308 14-354 12-338 (416)
54 PRK11375 allantoin permease; P 99.1 2.8E-06 6.2E-11 88.1 37.3 251 12-277 18-276 (484)
55 PTZ00206 amino acid transporte 99.0 2E-06 4.4E-11 89.0 31.4 251 24-287 63-316 (467)
56 PLN03074 auxin influx permease 98.9 2.2E-06 4.8E-11 88.4 30.5 236 22-287 47-291 (473)
57 COG1115 AlsT Na+/alanine sympo 98.8 3.2E-05 6.9E-10 76.5 31.4 308 16-354 58-382 (452)
58 KOG1304 Amino acid transporter 98.8 1.1E-05 2.4E-10 80.4 27.4 238 20-287 46-302 (449)
59 COG1457 CodB Purine-cytosine p 98.7 0.00021 4.5E-09 71.8 34.6 170 56-258 54-224 (442)
60 PF01490 Aa_trans: Transmembra 98.7 3.8E-09 8.3E-14 108.1 -0.4 363 19-430 1-376 (409)
61 COG1953 FUI1 Cytosine/uracil/t 98.6 0.00075 1.6E-08 68.1 35.9 336 12-389 32-375 (497)
62 COG3949 Uncharacterized membra 98.6 6.9E-05 1.5E-09 71.0 26.4 269 27-346 9-281 (349)
63 TIGR00835 agcS amino acid carr 98.6 0.00022 4.7E-09 71.8 31.7 300 19-353 45-364 (425)
64 PRK09442 panF sodium/panthothe 98.5 0.0026 5.5E-08 66.6 37.7 299 18-349 40-346 (483)
65 TIGR02119 panF sodium/pantothe 98.4 0.0023 4.9E-08 66.8 34.8 300 18-350 39-346 (471)
66 TIGR00800 ncs1 NCS1 nucleoside 98.3 0.0062 1.3E-07 62.9 35.8 248 15-282 8-261 (442)
67 PRK11017 codB cytosine permeas 98.3 0.0066 1.4E-07 61.8 39.4 220 18-274 8-229 (404)
68 TIGR00813 sss transporter, SSS 98.3 0.0014 3E-08 67.1 28.5 162 18-199 2-163 (407)
69 TIGR02121 Na_Pro_sym sodium/pr 98.2 0.0099 2.1E-07 62.2 35.1 164 18-199 35-203 (487)
70 COG0733 Na+-dependent transpor 98.2 0.0079 1.7E-07 60.1 31.1 247 24-286 12-272 (439)
71 PF05525 Branch_AA_trans: Bran 98.2 0.0054 1.2E-07 61.9 29.6 186 149-352 114-304 (427)
72 PRK12488 acetate permease; Pro 98.1 0.018 3.9E-07 61.1 37.5 162 18-200 66-228 (549)
73 PF00474 SSF: Sodium:solute sy 98.1 0.00076 1.7E-08 68.9 23.7 304 18-351 5-321 (406)
74 PRK00701 manganese transport p 98.1 0.0024 5.3E-08 65.3 25.7 35 312-347 298-332 (439)
75 COG0591 PutP Na+/proline sympo 98.0 0.029 6.3E-07 58.6 35.7 159 17-192 36-198 (493)
76 PF01566 Nramp: Natural resist 97.9 0.021 4.5E-07 57.3 29.0 45 310-354 241-285 (358)
77 COG1114 BrnQ Branched-chain am 97.9 0.033 7.1E-07 55.0 28.7 185 149-350 116-304 (431)
78 TIGR02711 symport_actP cation/ 97.8 0.064 1.4E-06 57.0 36.7 157 18-195 66-223 (549)
79 KOG1305 Amino acid transporter 97.8 0.014 3E-07 59.0 25.1 245 19-287 4-254 (411)
80 PRK15419 proline:sodium sympor 97.8 0.079 1.7E-06 55.7 37.5 162 18-197 39-205 (502)
81 TIGR03648 Na_symport_lg probab 97.7 0.11 2.5E-06 55.2 37.1 149 18-188 31-181 (552)
82 PRK10484 putative transporter; 97.7 0.11 2.4E-06 54.9 38.9 79 18-99 37-115 (523)
83 PRK09395 actP acetate permease 97.7 0.12 2.6E-06 55.0 39.0 156 17-195 67-225 (551)
84 PRK15433 branched-chain amino 97.7 0.088 1.9E-06 53.3 30.4 181 153-352 122-308 (439)
85 PF02028 BCCT: BCCT family tra 97.6 0.11 2.3E-06 53.8 29.9 379 17-428 71-484 (485)
86 COG1914 MntH Mn2+ and Fe2+ tra 97.6 0.12 2.6E-06 52.2 30.9 28 323-350 286-313 (416)
87 PRK09950 putative transporter; 97.5 0.19 4.2E-06 52.1 32.1 97 323-427 400-497 (506)
88 PF02133 Transp_cyt_pur: Perme 97.4 0.12 2.7E-06 53.3 26.8 242 17-278 5-251 (440)
89 COG4145 PanF Na+/panthothenate 97.0 0.36 7.8E-06 47.0 24.1 217 99-349 117-344 (473)
90 PRK09928 choline transport pro 97.0 0.66 1.4E-05 49.6 31.8 381 18-426 90-502 (679)
91 TIGR02358 thia_cytX probable h 97.0 0.51 1.1E-05 47.8 38.9 200 56-287 31-231 (386)
92 PRK03356 L-carnitine/gamma-but 96.9 0.67 1.4E-05 48.1 32.4 98 323-428 403-500 (504)
93 PF02705 K_trans: K+ potassium 96.5 0.44 9.6E-06 49.4 20.2 204 115-363 106-314 (534)
94 PF00209 SNF: Sodium:neurotran 96.2 0.78 1.7E-05 48.5 21.2 110 164-280 191-301 (523)
95 COG4147 DhlC Predicted symport 96.2 1.7 3.7E-05 44.0 27.9 189 68-281 88-289 (529)
96 TIGR00842 bcct choline/carniti 96.1 1.9 4.2E-05 44.2 34.7 97 323-426 354-450 (453)
97 COG1292 BetT Choline-glycine b 95.8 2.8 6E-05 43.3 27.9 375 18-427 85-496 (537)
98 PRK10745 trkD potassium transp 95.2 1.4 3E-05 46.5 17.6 206 115-365 117-327 (622)
99 TIGR00794 kup potassium uptake 95.2 0.51 1.1E-05 50.4 14.7 180 152-364 167-352 (688)
100 KOG2466 Uridine permease/thiam 95.1 4.3 9.4E-05 41.2 21.8 316 16-367 51-381 (572)
101 PLN00148 potassium transporter 94.2 0.66 1.4E-05 50.1 12.5 182 153-367 197-384 (785)
102 PLN00151 potassium transporter 94.1 0.7 1.5E-05 50.0 12.4 183 152-367 273-461 (852)
103 KOG4303 Vesicular inhibitory a 93.8 5.5 0.00012 38.6 16.4 237 18-286 114-359 (524)
104 PF13906 AA_permease_C: C-term 93.7 0.17 3.7E-06 34.5 4.7 50 435-497 1-50 (51)
105 PLN00150 potassium ion transpo 93.6 0.77 1.7E-05 49.5 11.7 181 153-366 214-400 (779)
106 PLN00149 potassium transporter 93.4 3 6.5E-05 45.3 15.8 186 151-366 196-387 (779)
107 COG3158 Kup K+ transporter [In 89.1 15 0.00033 38.2 14.7 46 152-200 147-192 (627)
108 KOG3659 Sodium-neurotransmitte 86.7 31 0.00067 36.3 15.4 132 149-287 250-382 (629)
109 PRK15238 inner membrane transp 83.2 4.5 9.8E-05 42.5 8.2 24 475-498 472-495 (496)
110 PF06570 DUF1129: Protein of u 77.7 15 0.00032 33.5 8.6 15 449-463 158-172 (206)
111 COG4146 Predicted symporter [G 76.6 84 0.0018 31.2 19.9 47 86-136 104-151 (571)
112 COG4858 Uncharacterized membra 73.3 22 0.00048 31.2 7.8 20 445-464 169-188 (226)
113 KOG3660 Sodium-neurotransmitte 73.2 1.4E+02 0.0031 32.3 24.0 47 155-201 217-264 (629)
114 PF02554 CstA: Carbon starvati 71.8 1.1E+02 0.0024 30.4 21.3 101 21-128 52-153 (376)
115 KOG2349 Na+:iodide/myo-inosito 58.8 1.9E+02 0.0041 30.9 12.8 235 85-352 108-362 (585)
116 COG1966 CstA Carbon starvation 52.5 3.1E+02 0.0067 29.0 32.1 104 21-131 52-156 (575)
117 TIGR01197 nramp NRAMP (natural 50.7 2.8E+02 0.0061 28.1 32.2 40 312-352 284-323 (390)
118 PF05297 Herpes_LMP1: Herpesvi 48.9 5.7 0.00012 37.2 0.0 22 367-388 13-34 (381)
119 PRK03557 zinc transporter ZitB 47.5 1.4E+02 0.003 29.2 9.4 33 417-449 63-95 (312)
120 COG4025 Predicted membrane pro 47.2 2.1E+02 0.0046 26.4 9.4 16 345-360 55-70 (284)
121 TIGR01167 LPXTG_anchor LPXTG-m 43.3 35 0.00076 20.6 3.0 13 477-489 14-26 (34)
122 PF01102 Glycophorin_A: Glycop 43.0 13 0.00028 30.5 1.2 18 482-499 78-95 (122)
123 PF14256 YwiC: YwiC-like prote 38.7 2.2E+02 0.0049 23.6 8.0 19 408-426 31-49 (129)
124 PRK09509 fieF ferrous iron eff 38.6 1.1E+02 0.0023 29.7 7.1 33 416-448 54-86 (299)
125 PF00324 AA_permease: Amino ac 37.5 4.9E+02 0.011 27.0 18.4 210 52-277 31-254 (478)
126 PF04235 DUF418: Protein of un 36.4 1.3E+02 0.0028 26.0 6.7 13 492-504 142-154 (163)
127 PRK11056 hypothetical protein; 33.1 2.6E+02 0.0056 22.8 7.0 24 448-471 70-93 (120)
128 PF11174 DUF2970: Protein of u 30.1 1.5E+02 0.0033 20.6 4.7 43 232-277 3-45 (56)
129 TIGR00842 bcct choline/carniti 29.4 6.6E+02 0.014 26.0 11.3 29 18-46 34-62 (453)
130 PF07226 DUF1422: Protein of u 27.8 3.3E+02 0.0072 22.1 7.5 24 448-471 70-93 (117)
131 COG1294 AppB Cytochrome bd-typ 27.8 6.1E+02 0.013 25.2 13.2 26 332-359 170-195 (346)
132 PF08693 SKG6: Transmembrane a 27.7 57 0.0012 20.9 2.0 16 480-495 23-38 (40)
133 PTZ00206 amino acid transporte 26.8 7.3E+02 0.016 25.7 11.6 38 323-360 135-172 (467)
134 PRK00968 tetrahydromethanopter 25.7 90 0.002 28.2 3.6 32 250-281 203-235 (240)
135 PF03806 ABG_transport: AbgT p 25.4 8.1E+02 0.017 25.8 11.5 98 62-179 302-405 (502)
136 PRK13108 prolipoprotein diacyl 25.0 2.7E+02 0.006 28.8 7.5 21 442-462 224-244 (460)
137 COG0053 MMT1 Predicted Co/Zn/C 24.3 2.6E+02 0.0057 27.2 7.0 43 417-459 57-99 (304)
138 TIGR01297 CDF cation diffusion 21.4 2.3E+02 0.0049 26.7 6.0 30 419-448 36-65 (268)
139 PF09874 DUF2101: Predicted me 20.8 4.9E+02 0.011 23.4 7.2 26 473-498 117-142 (206)
140 PRK09928 choline transport pro 20.6 9.1E+02 0.02 26.5 10.6 6 274-279 323-328 (679)
141 TIGR01478 STEVOR variant surfa 20.6 56 0.0012 31.0 1.5 21 481-501 271-291 (295)
142 PRK10881 putative hydrogenase 20.0 9.1E+02 0.02 24.4 21.2 30 160-189 71-100 (394)
No 1
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=1e-61 Score=476.22 Aligned_cols=490 Identities=39% Similarity=0.731 Sum_probs=452.6
Q ss_pred ChhhhHHHhcCCCcccccccchHHHHHHHHHHhhhhhhHHHHHHhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 010352 2 DSGEKRLNELGYKQELRREMTLFKTFAISFSTMTLFTGIIPLYGSSLLYAGPASLVWGWVVVSFFTWFVGLAMAEICSSF 81 (512)
Q Consensus 2 ~~~~~~~~~~~~~~~l~r~l~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~G~~~~~~~~ii~~l~~~~~a~~~~el~~~~ 81 (512)
|+|++.+.++++|+++||++++++.++++.+.+..+.|+.......+..+|+.+..|+|++++.+.+|.+++.+|+++.+
T Consensus 31 ~~d~~~L~~lgYkqef~R~fs~~s~fg~sFs~~g~~~~i~tsm~~gl~~gG~~~~vwgwlIa~~~~i~va~slaEl~Sa~ 110 (550)
T KOG1289|consen 31 DSDEELLAELGYKQELKREFSLFSIFGISFSLMGLLPGIATSMAYGLGSGGPPTLVWGWLIAGFFSICVALSLAELCSAM 110 (550)
T ss_pred cCCHHHHHHcCCchhhhhhhhHHHHHHHHHHHhcchhhhhhheeeccccCChHHHHHHHHHHHHHHHHHHhHHHHHHhhC
Confidence 56778888999999999999999999999999988889888888888888888799999999999999999999999999
Q ss_pred CCCChhhHHHhhccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccCchHHHHHHHHHHH
Q 010352 82 PTTGSLYFWAAHLASPKWGPFASWCCAWLETIGLIAGMGTQAYAGSQTLQSIILLCTGTNKDGGYFAPKWLFLCMYIGLT 161 (512)
Q Consensus 82 p~~GG~y~~~~~~~g~~~g~~~g~~~g~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 161 (512)
|.+||.|.|+....+|++||+.+|++||...+++....++..+..++.+........ +++.++.+++..+..++.
T Consensus 111 PtsGgLy~waa~lap~k~~~~~sw~~Gw~~~~g~~~~~aSi~~S~A~~i~~~v~l~n-----p~y~~~~~~~~~v~~ai~ 185 (550)
T KOG1289|consen 111 PTSGGLYFWAAVLAPPKYGPFASWVTGWLNYLGQATGVASITYSLAQLILGAVSLTN-----PNYEPTNYHQFGVFEAIL 185 (550)
T ss_pred CCCCcHHHHHHHhcCcchhhHHHHHHHHHHHHHHHhhchhhhHHHHHHHHHHHhhcC-----CCCcccceEeehHHHHHH
Confidence 999999999999999999999999999999999999999999999999999887754 778888999999999999
Q ss_pred HHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcccc---ccccccccccccccCCCCCCCchhHHHHhhhhhh
Q 010352 162 IIWAVLNTFALEVIAFIDIISMWWQVAGGLVIIIMLPLVALTT---QSASYVFTHFEMSPEATGISSKPYAVILSFLVSQ 238 (512)
Q Consensus 162 ~~~~~~~~~g~k~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (512)
.+..++|....|...+++.+.+...++.+++..+.......+. +..++.|.++ . |.++|++.++++..++....
T Consensus 186 ~v~~lln~~p~r~l~~I~~~~~~~~ll~~~i~~I~lla~~~~k~gFns~~~iF~~f-~--N~sgw~~~G~afil~f~~~~ 262 (550)
T KOG1289|consen 186 FVHGLLNSLPTRVLARINSVSVYLNLLFLVILMITLLAASSKKTGFNSGSFIFGKF-N--NYSGWKNNGWAFILGFFNPA 262 (550)
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCceeeecc-c--ccCCCCcchHHHHHhhccce
Confidence 9999999999999999999999999999999888887776543 4466778888 6 89999988999999999999
Q ss_pred hhhccccccchhhhhccCcccccchHHHHHHHHHHHHHHHHHHHHHHhcc-ChhhhhcCCCcccCCCcHHHHHHHHhhcc
Q 010352 239 YSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALILALCFSIQ-DFSYLYDKSNETAGAFVPAQILYDAFHGR 317 (512)
Q Consensus 239 ~~f~G~e~~~~~~~E~k~P~k~ip~ai~~~~~~~~i~y~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 317 (512)
|++.|+|++++++||+|||+|+.||||+.++.+..+.-....+.+....+ +.+.+.+++. ++|..+.+.+..++.
T Consensus 263 wt~sGyDa~~H~aEE~~nAsk~aPrgIi~s~~i~~i~gw~~~I~i~~~i~~D~~~v~ns~~----g~p~~~i~~~~lg~k 338 (550)
T KOG1289|consen 263 WTMSGYDAAAHMAEETKNASKAAPRGIISSIAIGFILGWIIIIGIAYTIPDDLDAVLNSSL----GQPIVQIYYQALGKK 338 (550)
T ss_pred eEEeccCchHHHHHHhcchhhhccHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHhcCCC----CChHHHHHHHhcCCC
Confidence 99999999999999999999999999999999999999999999999997 7778888776 788888888887554
Q ss_pred cCCcchhHHHHHHHHHHHHHhHHHHHhhhhhhHHhhhcCCCCCcccccccccccCCchHHHHHHHHHHHHHHhccccccH
Q 010352 318 YHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQLHPKHKVPSNAVWLCAAICIILGLPILKVN 397 (512)
Q Consensus 318 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~ma~d~~lP~~~~f~~~~~~~~~P~~a~~~~~~i~~~~~~~~~~~~ 397 (512)
...++....++..+....+...+.||..|+.+|||.+|++++++|+||++++|.+|+++..+++.++.++.+.+.
T Consensus 339 -----~~v~~~~l~ii~~f~~gi~s~~a~SR~v~afaRDg~LP~S~~~~~v~~~t~~P~nAv~l~~i~s~llgll~L~s~ 413 (550)
T KOG1289|consen 339 -----GAVFLLSLIIIALFFMGISSLTASSRLVYAFARDGGLPFSKYLAKVNPQTKVPLNAVLLSCIISILLGLLILASA 413 (550)
T ss_pred -----ceEehhHHHHHHHHHhhHHHHHHHHHHHhhhhccCCCCCcceeeecCCCCCCcHHHHHHHHHHHHHHHHHHhhhH
Confidence 446777778888899999999999999999999999999999999998889999999999999999999888999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCccCCCcccCCchhhHHHHHHHHHHHHHHHhcCCCCCCCCCCCccchhH
Q 010352 398 VVFTAITSICTIGWVGGYAVPIFARMVMAEQKFNAGPFYLGKASRPICLIAFLWICYTCSVFLLPTFYPISWDTFNYAPV 477 (512)
Q Consensus 398 ~~~~~l~~~~~~~~~~~~~l~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 477 (512)
.+++.+.+.+....+++|.++.++++..+|+..++.||+++|+..+..++++.|.+++++..++|..+|++.+++||+.+
T Consensus 414 ~Af~Alfs~a~i~l~~Ay~iP~~~rlf~~r~~f~~gp~~lGk~s~p~~~i~v~w~lf~~vil~fP~~~pvT~~~MNya~V 493 (550)
T KOG1289|consen 414 TAFNALFSAAAIALFIAYAIPIFCRLFFGRDDFRPGPFNLGKFSKPIGIIAVLWVLFMIVILCFPSVYPVTADNMNYACV 493 (550)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHhheeecccccCCCCccccccccchHHHHHHHHHHHHHHHhCCcccCCCcccCceEEE
Confidence 99999999999999999999999999998877788999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhheeecceeeecCccccCCC
Q 010352 478 ALGVGLGLIMLWWLLDARKWFTGPVRNIDNE 508 (512)
Q Consensus 478 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 508 (512)
+.+...+++++||+..+||..++|..+.+++
T Consensus 494 V~gg~~lf~li~~~~~~~k~f~gP~~~~~~~ 524 (550)
T KOG1289|consen 494 VYGGVMLFCLIYYFVSARKWFKGPIPSVLEE 524 (550)
T ss_pred eehhhhhhhhheeeeecceeecCCccccccc
Confidence 9999999999999999999999887776555
No 2
>TIGR00907 2A0304 amino acid permease (GABA permease).
Probab=100.00 E-value=1.8e-60 Score=495.44 Aligned_cols=480 Identities=34% Similarity=0.663 Sum_probs=400.9
Q ss_pred HhcCCCcccccccchHHHHHHHHHHhhhhhhHHHHHHhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChhh
Q 010352 9 NELGYKQELRREMTLFKTFAISFSTMTLFTGIIPLYGSSLLYAGPASLVWGWVVVSFFTWFVGLAMAEICSSFPTTGSLY 88 (512)
Q Consensus 9 ~~~~~~~~l~r~l~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~G~~~~~~~~ii~~l~~~~~a~~~~el~~~~p~~GG~y 88 (512)
++++++++|||+++.++.++++++.+.++.|++...+.+...+||.+.+++|++++++.++.+++++|+++++|++||.|
T Consensus 2 ~~~g~~~~l~r~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~Gp~~~i~~~~i~gi~~l~~~~~~aEl~s~~P~~Gg~y 81 (482)
T TIGR00907 2 VALGYKPELKREFSLWSIFGFAFSISNSWTGISTTYNYGLSSGGAMSIVWGWIIAGAGSICIALSLAELSSAYPTSGGQY 81 (482)
T ss_pred cccCCcceeecccchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCccchhHHHHHHHHHHHHHHHHHHHHHhhCCCCccHH
Confidence 45789999999999999999999988777899999988899999976899999999999999999999999999999999
Q ss_pred HHHhhccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccCchHHHHHHHHHHHHHHHHHH
Q 010352 89 FWAAHLASPKWGPFASWCCAWLETIGLIAGMGTQAYAGSQTLQSIILLCTGTNKDGGYFAPKWLFLCMYIGLTIIWAVLN 168 (512)
Q Consensus 89 ~~~~~~~g~~~g~~~g~~~g~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 168 (512)
.|++|.+|+++|+..+|++||.+++.+....+......++++...+....+ ...+.+++|....+.++++++++.+|
T Consensus 82 ~~~~~~~g~~~g~~~~f~~gW~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~i~~~~~~~~~~in 158 (482)
T TIGR00907 82 FWSAKLAPPRQMPFASWMTGWFNLAGQVAGTASTDLSVAQLILGIVSLTTP---GREYIPTRWHIFGIMIGIHLIHALIN 158 (482)
T ss_pred HHHHHhcccccccceeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---CCCccccCchhhhhHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999988876643210 01144566777777888888999999
Q ss_pred hchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcc-ccccccccccccccccCCCCCCCchhHHHHhhhhhhhhhcccccc
Q 010352 169 TFALEVIAFIDIISMWWQVAGGLVIIIMLPLVAL-TTQSASYVFTHFEMSPEATGISSKPYAVILSFLVSQYSLYGYDSA 247 (512)
Q Consensus 169 ~~g~k~~~~~~~~~~~~~i~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~ 247 (512)
++|+|..++++++..+++++.++++.+..+.... +.++.++.++++ . |+..+|.+.+.++..++....|+|.|+|.+
T Consensus 159 ~~g~k~~~~~~~~~~~~~i~~~~~~~i~~l~~~~~~~~~~~~~~~~~-~-~~~~g~~~~g~~~~~~~~~~~fsf~G~e~~ 236 (482)
T TIGR00907 159 SLPTKWLPRITSSAAYWSLLGFLTICITLLACKSPKFNDGKFVFTNF-N-NSTGGWKPGGFAFLLGLLNPAWSMTGYDGT 236 (482)
T ss_pred HhhHhHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCChhhhheee-e-CCCCCcCCCchhhhhhhhhhHHHhcCcchh
Confidence 9999999999999999888887766555544322 112333445555 3 122255443456777888889999999999
Q ss_pred chhhhhccCcccccchHHHHHHHHHHHHHHHHHHHHHHhccChhhhhcCCCcccCCCcHHHHHHHHhhcccCCcchhHHH
Q 010352 248 AHLTEETKGADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNETAGAFVPAQILYDAFHGRYHNSTGAIIL 327 (512)
Q Consensus 248 ~~~~~E~k~P~k~ip~ai~~~~~~~~i~y~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 327 (512)
++++||+|||+||+|||+..++.+..+++++..+......++.+++.+++. ++|..+.+.+.+ |.++...++
T Consensus 237 ~~~a~E~knP~r~iP~Ai~~s~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~----~~p~~~~~~~~~----g~~~~~~~~ 308 (482)
T TIGR00907 237 AHMAEEIENPEVVGPRAIIGAVAIGIVTGFCFNIVLFFSMGDIDSLISSTT----GQPIAQIFYNAL----GNKAGAIFL 308 (482)
T ss_pred hHHHHhcCChhhhcCHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHhcCCC----CChHHHHHHHHh----CCchHHHHH
Confidence 999999999999999999999988877666655555555545666655443 456555555544 554466677
Q ss_pred HHHHHHHHHHhHHHHHhhhhhhHHhhhcCCCCCcccccccccccCCchHHHHHHHHHHHHHHhccccccHHHHHHHHHHH
Q 010352 328 LIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQLHPKHKVPSNAVWLCAAICIILGLPILKVNVVFTAITSIC 407 (512)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~sR~l~~ma~d~~lP~~~~f~~~~~~~~~P~~a~~~~~~i~~~~~~~~~~~~~~~~~l~~~~ 407 (512)
....+.+.+++.++.+.+.||++++|||||.+|++++|+|+|||+++|+++++++.+++.++.+...++.+.++.+.++.
T Consensus 309 ~~~~~~~~~~~~~~~~~~~sR~l~a~ardg~lP~~~~f~~v~~~~~~P~~ai~~~~~i~~~~~~~~~~~~~~f~~l~~~~ 388 (482)
T TIGR00907 309 LCLILVTSFFCAITCMTANSRMIYAFSRDGGLPFSPLWSRVNPRTQVPLNAVWLSAVWIILIGLLGLGSSTAFQAIFSVC 388 (482)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCchHhhceeCCCCCCcHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 78888899999999999999999999999999999999999988899999999999999887665556677899999999
Q ss_pred HHHHHHHHHHHHHHHHhhcccCccCCCcccCCchhhHHHHHHHHHHHHHHHhcCCCCCCCCCCCccchhHHHHHHHHHHh
Q 010352 408 TIGWVGGYAVPIFARMVMAEQKFNAGPFYLGKASRPICLIAFLWICYTCSVFLLPTFYPISWDTFNYAPVALGVGLGLIM 487 (512)
Q Consensus 408 ~~~~~~~~~l~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 487 (512)
+....+.|.+++++.+++||+++++||||.+++++.++.+++.+..+.++..++|+..|.+..++||..+.++..++++.
T Consensus 389 ~~~~~i~y~~~~~~~l~~~~~~~~~~~f~lg~~~~~~~~~~~~~~~~~~v~~~~P~~~p~~~~~~ny~~~~~~~~~~~~~ 468 (482)
T TIGR00907 389 TVALDVSYVIPIICKLAKGRNTIAPGPFWLGKYGFFVNAVAVAWTVFSSVLFSFPPVLPVTPENMNYAVVVFAGVLAISL 468 (482)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCCCCcCCcchHHHHHHHHHHHHHHHhheeCCCCCCCCcccCChHhHHHHHHHHHHH
Confidence 99999999999988887776667788999976899999999999999999999999888888999999999999999999
Q ss_pred hhheeecceeeecC
Q 010352 488 LWWLLDARKWFTGP 501 (512)
Q Consensus 488 ~~~~~~~~~~~~~~ 501 (512)
++|..++||++++|
T Consensus 469 ~~~~~~~r~~~~gp 482 (482)
T TIGR00907 469 VYWKYKGRKEFTGP 482 (482)
T ss_pred HHheEeceeeccCc
Confidence 99999999988875
No 3
>PRK15049 L-asparagine permease; Provisional
Probab=100.00 E-value=4.9e-56 Score=460.79 Aligned_cols=439 Identities=15% Similarity=0.185 Sum_probs=350.6
Q ss_pred cccccccchHHHHHHHHHHhhhhhhHHHHHHhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChhhHHHhhc
Q 010352 15 QELRREMTLFKTFAISFSTMTLFTGIIPLYGSSLLYAGPASLVWGWVVVSFFTWFVGLAMAEICSSFPTTGSLYFWAAHL 94 (512)
Q Consensus 15 ~~l~r~l~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~G~~~~~~~~ii~~l~~~~~a~~~~el~~~~p~~GG~y~~~~~~ 94 (512)
+++||+++.++..++++|.++| +|+|..++.+...+||. .+++|+++++++++.+++++|+++.+|++||.|.|+++.
T Consensus 24 ~~l~r~L~~~~~~~i~~G~~IG-sGiF~~~g~~~~~aGp~-~il~~li~~i~~~~v~~slaELas~~P~aGg~y~y~~~~ 101 (499)
T PRK15049 24 EGYHKAMGNRQVQMIAIGGAIG-TGLFLGAGARLQMAGPA-LALVYLICGLFSFFILRALGELVLHRPSSGSFVSYAREF 101 (499)
T ss_pred hhhhccCCHhHhHHHhhhcccc-chHHHhhHHHHHhcCCH-HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHH
Confidence 3599999999999999999999 99999999999999998 789999999999999999999999999999999999999
Q ss_pred cCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcc-CchHHHHHHHHHHHHHHHHHHhchhh
Q 010352 95 ASPKWGPFASWCCAWLETIGLIAGMGTQAYAGSQTLQSIILLCTGTNKDGGYF-APKWLFLCMYIGLTIIWAVLNTFALE 173 (512)
Q Consensus 95 ~g~~~g~~~g~~~g~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~g~k 173 (512)
+||..||++||.+|+.+....+......+.+.... + .+. .+.| ...++++++++.+|++|+|
T Consensus 102 ----~G~~~gf~~GW~~~l~~~~~~~~~~~a~~~~~~~~-~---------~~~~~~~~---~~~~~~~~l~~~iN~~gvk 164 (499)
T PRK15049 102 ----LGEKAAYVAGWMYFINWAMTGIVDITAVALYMHYW-G---------AFGGVPQW---VFALAALTIVGTMNMIGVK 164 (499)
T ss_pred ----hCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-c---------cCCCCcHH---HHHHHHHHHHHHHHHHHHH
Confidence 66677999999999998776666665555555421 1 111 2333 3456677789999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhcccccc---ccccccccccccCCCCCCCchhHHHHhhhhhhhhhccccccchh
Q 010352 174 VIAFIDIISMWWQVAGGLVIIIMLPLVALTTQS---ASYVFTHFEMSPEATGISSKPYAVILSFLVSQYSLYGYDSAAHL 250 (512)
Q Consensus 174 ~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~ 250 (512)
..++++.+++.+|++.++.+++.++.......+ ....+.+. . .+.+.++++..+++.++...+|+|.|+|.+++.
T Consensus 165 ~~~~i~~~~~~iki~~l~~~ii~~i~~~~~~~~~~~~~~~f~~~-~-~~~~~~p~g~~~~~~~~~~~~faf~G~e~i~~~ 242 (499)
T PRK15049 165 WFAEMEFWFALIKVLAIVTFLVVGTVFLGSGQPLDGNTTGFHLI-T-DNGGFFPHGLLPALVLIQGVVFAFASIEMVGTA 242 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCcccccc-c-CCCCcccccHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 999999999999998888877766543211111 11112222 1 022334544556777788899999999999999
Q ss_pred hhhccCcccccchHHHHHHHHHHHHHHHHHHHHHHhccChhhhhcCCCcccCCCcHHHHHHHHhhcccCCcchhHHHHHH
Q 010352 251 TEETKGADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNETAGAFVPAQILYDAFHGRYHNSTGAIILLIV 330 (512)
Q Consensus 251 ~~E~k~P~k~ip~ai~~~~~~~~i~y~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 330 (512)
+||+|||+|++|||+..++..+.++|++........+ +++++... +.|. .+.+... |.++...++.+.
T Consensus 243 aeE~knP~r~iPrAi~~~~~~i~~~yi~~~~~~~~~~-p~~~~~~~------~sP~----~~~~~~~-g~~~~~~ii~~~ 310 (499)
T PRK15049 243 AGECKDPQTMVPKAINSVIWRIGLFYVGSVVLLVMLL-PWSAYQAG------QSPF----VTFFSKL-GVPYIGSIMNIV 310 (499)
T ss_pred HHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHheec-chhccCcC------CCHH----HHHHHHc-CchhHHHHHHHH
Confidence 9999999999999999999999999999999999888 77666432 2343 3334433 666678888999
Q ss_pred HHHHHHHhHHHHHhhhhhhHHhhhcCCCCCcccccccccccCCchHHHHHHHHHHHHHHhc-cccccHHHHHHHHHHHHH
Q 010352 331 IWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQLHPKHKVPSNAVWLCAAICIILGL-PILKVNVVFTAITSICTI 409 (512)
Q Consensus 331 ~~~~~~~~~~~~~~~~sR~l~~ma~d~~lP~~~~f~~~~~~~~~P~~a~~~~~~i~~~~~~-~~~~~~~~~~~l~~~~~~ 409 (512)
.+++.+++.++.+++.+|++|+|||||.+| ++|+|+| |+++|++|++++.+++++..+ ....+.+.++.+.++.+.
T Consensus 311 ilia~~ss~ns~~~~~sR~l~a~Ardg~lP--~~f~kv~-k~~~P~~Ail~~~~i~~l~~~l~~~~~~~~f~~l~~~~~~ 387 (499)
T PRK15049 311 VLTAALSSLNSGLYCTGRILRSMAMGGSAP--SFMAKMS-RQHVPYAGILATLVVYVVGVFLNYLVPSRVFEIVLNFASL 387 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCcC--HHHHHhC-CCCCCHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHH
Confidence 999999999999999999999999999999 9999999 899999999999888665332 223456789999999999
Q ss_pred HHHHHHHHHHHHHHhhcccC----ccCCCcccCCchhhHHHHHHHHHHHHHHHhcCCCCCCCCCCCccchhHHHHHHHHH
Q 010352 410 GWVGGYAVPIFARMVMAEQK----FNAGPFYLGKASRPICLIAFLWICYTCSVFLLPTFYPISWDTFNYAPVALGVGLGL 485 (512)
Q Consensus 410 ~~~~~~~l~~~~~~~~r~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 485 (512)
...+.|.+++++.+++||+. ++++|||.| .++..++++++++++.++...+.+ +++++..+....+.++
T Consensus 388 ~~li~y~~~~~~~l~~R~~~~~~~~~~~pf~~~-~~p~~~~~~l~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~ 460 (499)
T PRK15049 388 GIIASWAFIIVCQMRLRKAIKEGKAADVSFKLP-GAPFTSWLTLLFLLSVLVLMAFDY------PNGTYTIAALPIIGIL 460 (499)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhcCCCCCCCccc-CccHHHHHHHHHHHHHHHHHHHcC------cchHHHHHHHHHHHHH
Confidence 99999999999999887642 235789999 799999999999988888877631 1456666666666666
Q ss_pred Hhhhheeecce
Q 010352 486 IMLWWLLDARK 496 (512)
Q Consensus 486 ~~~~~~~~~~~ 496 (512)
..++|+.+|||
T Consensus 461 ~~~~~~~~~~~ 471 (499)
T PRK15049 461 LVIGWFGVRKR 471 (499)
T ss_pred HHHHHHHHhcc
Confidence 77666664443
No 4
>TIGR03428 ureacarb_perm permease, urea carboxylase system. A number of bacteria obtain nitrogen by biotin- and ATP-dependent urea degradation system distinct from urease. The two characterized proteins of this system are the enzymes urea carboxylase and allophanate hydrolase, but other, uncharacterized proteins co-occur as genes encoded nearby in multiple organisms. This family includes predicted permeases of the amino acid permease family, likely to transport either urea or a compound from which urea is derived. It is found so far only Actinobacteria, whereas a number of other species with the urea carboxylase have an adjacent ABC transporter operon.
Probab=100.00 E-value=2.7e-54 Score=447.42 Aligned_cols=458 Identities=21% Similarity=0.346 Sum_probs=360.0
Q ss_pred HHhcCCCcccccccchHHHHHHHHHHhhhhhhHHHHHHhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChh
Q 010352 8 LNELGYKQELRREMTLFKTFAISFSTMTLFTGIIPLYGSSLLYAGPASLVWGWVVVSFFTWFVGLAMAEICSSFPTTGSL 87 (512)
Q Consensus 8 ~~~~~~~~~l~r~l~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~G~~~~~~~~ii~~l~~~~~a~~~~el~~~~p~~GG~ 87 (512)
.++++++++|||+++.++.++++++.+..+.|++...+.+...+||. .+++|+++++..++.+++++|+++++|++||.
T Consensus 2 l~~~g~~~~L~R~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~Gp~-~~~~~li~~i~~l~~als~aEL~s~~P~aGG~ 80 (475)
T TIGR03428 2 LQRFGYQPQLHRKLGRYASFAAGFSFVSILTTIFQLFGFGYGFGGPA-FFWTWPVVFVGQLLVALNFAELAARYPISGAI 80 (475)
T ss_pred hhhcCCccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCcH-HHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCH
Confidence 35689999999999999999999998766699999999999999996 99999999999999999999999999999999
Q ss_pred hHHHhhccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcc--CchHHHHHHHHHHHHHHH
Q 010352 88 YFWAAHLASPKWGPFASWCCAWLETIGLIAGMGTQAYAGSQTLQSIILLCTGTNKDGGYF--APKWLFLCMYIGLTIIWA 165 (512)
Q Consensus 88 y~~~~~~~g~~~g~~~g~~~g~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~i~~~~~~~~~ 165 (512)
|.|+++. +||..||++||.+++.+....+........++..+++.......+.++. ...++..+++++++++.+
T Consensus 81 Y~~~~~~----~g~~~gf~~gW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (475)
T TIGR03428 81 YQWSRRM----GGEVIGWFAGWFMIIAQIVTAAAAAIALQVVLPNIWSGFQIIGEDPTLTSPSGAANAVLLGSVLLVLTT 156 (475)
T ss_pred HHHHHHH----cCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCccccCCCchHHHHHHHHHHHHHHH
Confidence 9999999 5666799999999999887777666666555544321100000001221 123556777778888999
Q ss_pred HHHhchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccccccccccccCCCCCCCchhHHHHhhhhhhhhhcccc
Q 010352 166 VLNTFALEVIAFIDIISMWWQVAGGLVIIIMLPLVALTTQSASYVFTHFEMSPEATGISSKPYAVILSFLVSQYSLYGYD 245 (512)
Q Consensus 166 ~~~~~g~k~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e 245 (512)
.+|++|+|..++++++.+.++++.++++++..+.... ++....+++. . + ...++...++..+....+|+|.|+|
T Consensus 157 ~in~~g~k~~~~i~~~~~~~~i~~l~~iii~~~~~~~--~~~~~~f~~~-~--~-~~~~~~~~~~~~~~~~~~~~f~G~e 230 (475)
T TIGR03428 157 VINCIGVEWMSRVNTIGVTCEIVGVLAVIGVLFTHAQ--RGPGVVFDTS-V--T-GASPGYYGAFLVSGLMAAYVMVGFG 230 (475)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCcceeeecC-C--C-CCCccHHHHHHHHHHHHHHHhcCcc
Confidence 9999999999999999999999887777666554432 2222222222 1 1 1111113457778888899999999
Q ss_pred ccchhhhhccCcccccchHHHHHHHHHHHHHHHHHHHHHHhccChhhhhcCCCcccCCCcHHHHHHHHhhcccCCcchhH
Q 010352 246 SAAHLTEETKGADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNETAGAFVPAQILYDAFHGRYHNSTGAI 325 (512)
Q Consensus 246 ~~~~~~~E~k~P~k~ip~ai~~~~~~~~i~y~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 325 (512)
.+++++||+|||+||+||++..++.++.++|.+..++.....++.++...+++ +.| ..+.+.. |.++. .
T Consensus 231 ~~~~~aeE~knP~r~iPrai~~s~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~p--~~~~~~~----g~~~~-~ 299 (475)
T TIGR03428 231 SAGELSEETKNPRRVAPRTILTALSVSALGGGLMILGALMAAPSLTDGRLAAE----GLP--YVLSAVL----DSPWG-T 299 (475)
T ss_pred hHHHHHHHhcCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHhhcCCC----chH--HHHHHHh----CcHhH-H
Confidence 99999999999999999999999999999888888887777644333322222 222 3333333 54433 3
Q ss_pred HHHHHHHHHHHHhHHHHHhhhhhhHHhhhcCCCCCcccccccccccCCchHHHHHHHHHHHHHHhccccccHHHHHHHHH
Q 010352 326 ILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQLHPKHKVPSNAVWLCAAICIILGLPILKVNVVFTAITS 405 (512)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~sR~l~~ma~d~~lP~~~~f~~~~~~~~~P~~a~~~~~~i~~~~~~~~~~~~~~~~~l~~ 405 (512)
.+....+.+.+++.++...+.+|++|++||||.+|++++|+|+|||+++|++++++..+++.++.++..++...|+.+.+
T Consensus 300 ~~~~~~~i~~~~~~~~~~~~~sR~~~a~Ardg~lP~s~~~~~v~~r~~tP~~A~~l~~~i~~~~~~i~~~~~~af~~l~s 379 (475)
T TIGR03428 300 VLLVDVAIAILVCTLAIQTAGSRLMFSMARDGKLPASAQLSRVHPRTGTPILPSIVIGVLCIGILLINVGNSALFATLAS 379 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchHHhcccCCCCCCcHHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 44456677889999999999999999999999999777999999999999999999999998877766677789999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccC-------ccCCCcccCCchhhHHHHHHHHHHHHHHHhcCCCCCCCCC----CCccc
Q 010352 406 ICTIGWVGGYAVPIFARMVMAEQK-------FNAGPFYLGKASRPICLIAFLWICYTCSVFLLPTFYPISW----DTFNY 474 (512)
Q Consensus 406 ~~~~~~~~~~~l~~~~~~~~r~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ 474 (512)
+++....+.|.++.+..+.+|+|. .+++||+++|++++++++++++.++..+..++|...|.+. +++||
T Consensus 380 ~~~~~~~~~Y~~~~~~~l~~~~~~~~~~~~~~~~g~f~lg~~g~~vn~~a~~~~~~~~v~~~~P~~~~~~~~~~~~~mny 459 (475)
T TIGR03428 380 VCIVLIYLAYLLVTVPLLLRRLRGWPRGDQTDPAGLFSLGRWGLPVNILAVVYGALMVVNLSWPRPEVYDPSGDGPIMLW 459 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCccCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCcccccch
Confidence 999999999999777766554321 3667899999999999999999999999999998877666 68999
Q ss_pred hhHHHHHHHHHHh
Q 010352 475 APVALGVGLGLIM 487 (512)
Q Consensus 475 ~~~~~~~~l~~~~ 487 (512)
..++++..+++..
T Consensus 460 ~~~~~~~~~~~~~ 472 (475)
T TIGR03428 460 SAPIFVGAVLLLG 472 (475)
T ss_pred HHHHHHHHHHHHH
Confidence 8777777666554
No 5
>PRK10249 phenylalanine transporter; Provisional
Probab=100.00 E-value=1.3e-54 Score=446.99 Aligned_cols=449 Identities=16% Similarity=0.165 Sum_probs=358.8
Q ss_pred CChhhhHHHhcCCCc--ccccccchHHHHHHHHHHhhhhhhHHHHHHhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHH
Q 010352 1 MDSGEKRLNELGYKQ--ELRREMTLFKTFAISFSTMTLFTGIIPLYGSSLLYAGPASLVWGWVVVSFFTWFVGLAMAEIC 78 (512)
Q Consensus 1 ~~~~~~~~~~~~~~~--~l~r~l~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~G~~~~~~~~ii~~l~~~~~a~~~~el~ 78 (512)
|++|.++.++..+++ ++||+++.+++..+++|.++| +|++..++.+.+.+||. ++++|+++++++++.+++++|++
T Consensus 1 ~~~~~~~~~~~~~~~~~~l~r~l~~~~~~~i~ig~~IG-sGif~~~g~~~~~aGp~-~~l~~li~~~~~~~~~~~~aEl~ 78 (458)
T PRK10249 1 MKNASTVSEDTASNQEPTLHRGLHNRHIQLIALGGAIG-TGLFLGIGPAIQMAGPA-VLLGYGVAGIIAFLIMRQLGEMV 78 (458)
T ss_pred CCCccccchhhccCCchhhhccCcHhHhhhhhhhcccc-hhHHHHHHHHHHhcCcH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 667666655555555 799999999999999999999 99999999999999997 99999999999999999999999
Q ss_pred hhcCCCChhhHHHhhccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccCchHHHHHHHH
Q 010352 79 SSFPTTGSLYFWAAHLASPKWGPFASWCCAWLETIGLIAGMGTQAYAGSQTLQSIILLCTGTNKDGGYFAPKWLFLCMYI 158 (512)
Q Consensus 79 ~~~p~~GG~y~~~~~~~g~~~g~~~g~~~g~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 158 (512)
+++|++||.|.|++|. +||.+||++||.+|+.+....+.+....+.+++..+ ++ .+. ....+
T Consensus 79 ~~~P~~Gg~~~y~~~~----~g~~~gf~~gw~~~~~~~~~~~~~~~a~~~~~~~~~---------~~--~~~---~~~~~ 140 (458)
T PRK10249 79 VEEPVSGSFAHFAYKY----WGPFAGFLSGWNYWVMFVLVGMAELTAAGIYMQYWF---------PD--VPT---WIWAA 140 (458)
T ss_pred HhCCCCCCHHHHHHHH----hChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC---------Cc--CcH---HHHHH
Confidence 9999999999999999 778889999999999998877777777777776532 11 122 23456
Q ss_pred HHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhccc-cccccccccccccccCCCCCCCchhHHHHhhhhh
Q 010352 159 GLTIIWAVLNTFALEVIAFIDIISMWWQVAGGLVIIIMLPLVALT-TQSASYVFTHFEMSPEATGISSKPYAVILSFLVS 237 (512)
Q Consensus 159 ~~~~~~~~~~~~g~k~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (512)
+++++.+.+|++|+|..+++|.+++.+|++.++++++.++..... +......+++. . ++...++++..++..++...
T Consensus 141 ~~~~l~~~lN~~gv~~~~~i~~~~~~ikv~~i~~~i~~~i~~~~~~~~~~~~~~~~~-~-~~~~~~~~g~~~~~~~~~~~ 218 (458)
T PRK10249 141 AFFIIINAVNLVNVRLYGETEFWFALIKVLAIIGMIGFGLWLLFSGHGGEKASIDNL-W-RYGGFFATGWNGLILSLAVI 218 (458)
T ss_pred HHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhc-c-CCCCCCCCcHHHHHHHHHHH
Confidence 777788999999999999999999999998777776665443211 11111222222 1 01111233445689999999
Q ss_pred hhhhccccccchhhhhccCcccccchHHHHHHHHHHHHHHHHHHHHHHhccChhhhhcCCCcccCCCcHHHHHHHHhhcc
Q 010352 238 QYSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNETAGAFVPAQILYDAFHGR 317 (512)
Q Consensus 238 ~~~f~G~e~~~~~~~E~k~P~k~ip~ai~~~~~~~~i~y~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 317 (512)
+|+|.|+|.+++.+||+|||+|++||++..++..+.++|++......... |++++..+ +.|..+.+.+ .
T Consensus 219 ~~af~G~e~~~~~a~E~~~P~k~iPrai~~~~~~~~~~y~~~~~~~~~~~-~~~~~~~~------~~p~~~~~~~----~ 287 (458)
T PRK10249 219 MFSFGGLELIGITAAEARDPEKSIPKAVNQVVYRILLFYIGSLVVLLALY-PWVEVKSN------SSPFVMIFHN----L 287 (458)
T ss_pred HHHHcCHHHHHHHHHHhcCHhhHHHHHHHHHHHHHHHHHHHHHHHHheec-cccccCcc------CCcHHHHHHH----c
Confidence 99999999999999999999999999999999999999999888888777 55554322 2344343333 3
Q ss_pred cCCcchhHHHHHHHHHHHHHhHHHHHhhhhhhHHhhhcCCCCCcccccccccccCCchHHHHHHHHHHHHHHhcc-cccc
Q 010352 318 YHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQLHPKHKVPSNAVWLCAAICIILGLP-ILKV 396 (512)
Q Consensus 318 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~ma~d~~lP~~~~f~~~~~~~~~P~~a~~~~~~i~~~~~~~-~~~~ 396 (512)
+.++...++.+..+.+.+++.++.+.+.+|++|+|||||.+| ++|+|+| |+++|++|++++.+++.+..+. ...+
T Consensus 288 -~~~~~~~~~~~~~~~a~~~~~~~~~~~~sR~l~a~ardg~lP--~~~~kv~-~~~~P~~All~~~~i~~l~~l~~~~~~ 363 (458)
T PRK10249 288 -DSNVVASALNFVILVASLSVYNSGVYSNSRMLFGLSVQGNAP--KFLTRVS-RRGVPINSLMLSGAITSLVVLINYLLP 363 (458)
T ss_pred -CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcC--HHHHHhC-CCCCCHHHHHHHHHHHHHHHHHHHhCh
Confidence 445577778888889999999999999999999999999999 9999999 8899999999999999876554 2455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc---cCccCCCcccCCchhhHHHHHHHHHHHHHHHhcCCCCCCCCCCCcc
Q 010352 397 NVVFTAITSICTIGWVGGYAVPIFARMVMAE---QKFNAGPFYLGKASRPICLIAFLWICYTCSVFLLPTFYPISWDTFN 473 (512)
Q Consensus 397 ~~~~~~l~~~~~~~~~~~~~l~~~~~~~~r~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (512)
.+.++.+.++.+....+.|.+++.+.+++|| ++++++|||.| ++|..++++++++.+.++... +.++++
T Consensus 364 ~~~f~~l~~~~~~~~~i~y~~~~~~~l~~r~~~~~~~~~~p~~~~-~~p~~~~~~l~~~~~~~v~~~-------~~~~~~ 435 (458)
T PRK10249 364 QKAFGLLMALVVATLLLNWIMICLAHLRFRAAMRRQGRETQFKAL-LYPFGNYLCIAFLGMILLLMC-------TMDDMR 435 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccCC-CccHHHHHHHHHHHHHHHHHH-------HcchHH
Confidence 6789999999999999999999999988874 34456899998 999999999999998888764 345667
Q ss_pred chhHHHHHHHHHHhhhheeec
Q 010352 474 YAPVALGVGLGLIMLWWLLDA 494 (512)
Q Consensus 474 ~~~~~~~~~l~~~~~~~~~~~ 494 (512)
|..+....+.++..+.|..++
T Consensus 436 ~~~~~~~~~~~~~~~~~~~~~ 456 (458)
T PRK10249 436 LSAILLPVWIVFLFVAFKTLR 456 (458)
T ss_pred HHHHHHHHHHHHHHHHHHhee
Confidence 766666666665555555543
No 6
>TIGR00906 2A0303 cationic amino acid transport permease.
Probab=100.00 E-value=1.5e-53 Score=446.14 Aligned_cols=443 Identities=19% Similarity=0.201 Sum_probs=358.1
Q ss_pred CCCcccccccchHHHHHHHHHHhhhhhhHHHHHHhhh-hcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChhhHH
Q 010352 12 GYKQELRREMTLFKTFAISFSTMTLFTGIIPLYGSSL-LYAGPASLVWGWVVVSFFTWFVGLAMAEICSSFPTTGSLYFW 90 (512)
Q Consensus 12 ~~~~~l~r~l~~~~~~~~~~~~~~~~~gi~~~~~~~~-~~~G~~~~~~~~ii~~l~~~~~a~~~~el~~~~p~~GG~y~~ 90 (512)
.++++++|+++.+|+++++++.++| +|++...+... ..+||. .+++|+++++.+++.+++|+|+++++|++||.|.|
T Consensus 21 ~~~~~L~r~L~~~~l~~l~ig~viG-sGIf~l~g~~a~~~aGp~-~~ls~liagv~~l~~al~yaElas~~P~sGg~Y~y 98 (557)
T TIGR00906 21 REESKMKRCLTTWDLMALGIGSTIG-AGIYVLTGEVARNDSGPA-IVLSFLISGLAAVLSGFCYAEFGARVPKAGSAYLY 98 (557)
T ss_pred ccccchhhcCCHHHHHHHHhhhhhc-chhhhhhhHHHHhccCcH-HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcceee
Confidence 3455799999999999999999999 99999998765 568998 99999999999999999999999999999999999
Q ss_pred HhhccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC--CccCch--HHHHHHHHHHHHHHHH
Q 010352 91 AAHLASPKWGPFASWCCAWLETIGLIAGMGTQAYAGSQTLQSIILLCTGTNKDG--GYFAPK--WLFLCMYIGLTIIWAV 166 (512)
Q Consensus 91 ~~~~~g~~~g~~~g~~~g~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~--~~~~~i~~~~~~~~~~ 166 (512)
+++. +|+.+||++||.+++.|....+..+...+.|+..++....+..... +...+. ....+++++++++++.
T Consensus 99 ~~~~----~G~~~gfi~GW~~~l~~~~~~a~va~~~s~yl~~ll~~~~~~~~~~~~~~~~~~l~~~~~~~a~~ii~l~~~ 174 (557)
T TIGR00906 99 SYVT----VGELWAFITGWNLILEYVIGTAAVARSWSAYFDELLNKQIGQFRRTYFKLNYDGLAEYPDFFAVCLILLLAV 174 (557)
T ss_pred HHHH----hCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccCCcccccchHHHHHHHHHHHH
Confidence 9999 7788899999999999999999999999999988775311000000 000010 1123456677778889
Q ss_pred HHhchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccccccccccccCCCCCC-CchhHHHHhhhhhhhhhcccc
Q 010352 167 LNTFALEVIAFIDIISMWWQVAGGLVIIIMLPLVALTTQSASYVFTHFEMSPEATGIS-SKPYAVILSFLVSQYSLYGYD 245 (512)
Q Consensus 167 ~~~~g~k~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~f~G~e 245 (512)
+|.+|+|.++|++++++.++++.++++++.++..... .++..... . +.+++. .+..+++.+...++|+|.|+|
T Consensus 175 ln~~Gik~s~~v~~i~~~iki~~l~~~iv~g~~~~~~---~~~~~~~~-~--~~~~f~p~g~~g~l~g~~~~~faf~Gfd 248 (557)
T TIGR00906 175 LLSFGVKESAWVNKIFTAINILVLLFVIIAGFTKADV---ANWSITEE-K--GAGGFMPYGFTGVLSGAATCFFAFIGFD 248 (557)
T ss_pred HHHhchhHHHHHHHHHHHHHHHHHHHhhhHHHhhCCc---hhcccccc-c--cCCCCCCcchHHHHHHHHHHHHHHhhHH
Confidence 9999999999999999999999988888887765321 22221111 1 112222 234578999999999999999
Q ss_pred ccchhhhhccCcccccchHHHHHHHHHHHHHHHHHHHHHHhccChhhhhcCCCcccCCCcHHHHHHHHhhcccCCcchhH
Q 010352 246 SAAHLTEETKGADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNETAGAFVPAQILYDAFHGRYHNSTGAI 325 (512)
Q Consensus 246 ~~~~~~~E~k~P~k~ip~ai~~~~~~~~i~y~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 325 (512)
.+++++||+|||+||+||++..++.++.++|++.+++..... +++++..+ .|... .+... |.++...
T Consensus 249 ~v~~~aeE~knP~r~iP~aii~sl~i~~vlY~lv~~~l~~~v-p~~~l~~~-------~p~~~----a~~~~-g~~~~~~ 315 (557)
T TIGR00906 249 AIATTGEEVKNPQRAIPIGIVTSLLVCFVAYFLMSAALTLMM-PYYLLDPD-------APFPV----AFEYV-GWGPAKY 315 (557)
T ss_pred HHHHhHHhccCccccccHHHHHHHHHHHHHHHHHHHHHhccc-cHHHhCcC-------cHHHH----HHHHc-CchHHHH
Confidence 999999999999999999999999999999999999999988 76665321 23333 33333 6666778
Q ss_pred HHHHHHHHHHHHhHHHHHhhhhhhHHhhhcCCCCCcccccccccccCCchHHHHHHHHHHHHHHhccccccHHHHHHHHH
Q 010352 326 ILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQLHPKHKVPSNAVWLCAAICIILGLPILKVNVVFTAITS 405 (512)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~sR~l~~ma~d~~lP~~~~f~~~~~~~~~P~~a~~~~~~i~~~~~~~~~~~~~~~~~l~~ 405 (512)
++.++.+++.+++.++.+.+.+|++|+|||||.+| ++|+|+|||+++|+++++++++++.++.++. +++.+.+
T Consensus 316 ii~~~~~~~~~~sl~~~~~~~sRil~amarDGlLP--~~fakv~~r~~tP~~Ail~~~iv~~il~~~~-----~~~~l~~ 388 (557)
T TIGR00906 316 IVAVGALCGMSTSLLGGMFPLPRVIYAMARDGLLF--KWLAQINSKTKTPINATVVSGAIAALMAFLF-----DLKALVD 388 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcc--HHHhccCCCCCCcHHHHHHHHHHHHHHHHHc-----CHHHHHH
Confidence 88889999999999999999999999999999999 9999999999999999999999998876632 4577888
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccC--------------------------------------------------------
Q 010352 406 ICTIGWVGGYAVPIFARMVMAEQK-------------------------------------------------------- 429 (512)
Q Consensus 406 ~~~~~~~~~~~l~~~~~~~~r~~~-------------------------------------------------------- 429 (512)
+.+...++.|.+.+++.++.|+++
T Consensus 389 l~sig~ll~y~lv~~~~l~lR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (557)
T TIGR00906 389 LLSIGTLLAYSLVAACVLILRYQPGLVYGQAKDTDEKDTLDSWVPFTSKSESQSEGFSLRTLFSGLILGLSILTTYGRAA 468 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccccccccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHHHhhhhh
Confidence 889999999999888887777432
Q ss_pred -----------------------------cc--CCCcccCCchhhHHHHHHHHHHHHHHHhcCCCCCCCCCCCccchhHH
Q 010352 430 -----------------------------FN--AGPFYLGKASRPICLIAFLWICYTCSVFLLPTFYPISWDTFNYAPVA 478 (512)
Q Consensus 430 -----------------------------~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (512)
+. +|+||.| +.|.++.+++..+.+++.-... .+|..
T Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~p-~~p~~p~~~i~~~~~l~~~l~~------------~~~~~ 535 (557)
T TIGR00906 469 IAEEAWSIALLTLFLVLFLLVVLTIWRQPQNKQKVAFKVP-LVPFLPALSILINIFLMVQLDA------------DTWVR 535 (557)
T ss_pred ccccchhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCC-CchHHHHHHHHHHHHHHHcCCH------------HHHHH
Confidence 11 5678888 9999999999999887765411 26789
Q ss_pred HHHHHHHHhhhheeecceeee
Q 010352 479 LGVGLGLIMLWWLLDARKWFT 499 (512)
Q Consensus 479 ~~~~l~~~~~~~~~~~~~~~~ 499 (512)
+.+++.++.+.|+.|.+||.+
T Consensus 536 ~~~w~~~g~~~y~~yg~~~s~ 556 (557)
T TIGR00906 536 FAIWMAIGFLIYFLYGIRHSL 556 (557)
T ss_pred HHHHHHHHHHHHhhhhhhccC
Confidence 999999999999999888764
No 7
>PRK11387 S-methylmethionine transporter; Provisional
Probab=100.00 E-value=1.9e-53 Score=440.57 Aligned_cols=406 Identities=17% Similarity=0.235 Sum_probs=323.9
Q ss_pred cccccccchHHHHHHHHHHhhhhhhHHHHHHhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChhhHHHhhc
Q 010352 15 QELRREMTLFKTFAISFSTMTLFTGIIPLYGSSLLYAGPASLVWGWVVVSFFTWFVGLAMAEICSSFPTTGSLYFWAAHL 94 (512)
Q Consensus 15 ~~l~r~l~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~G~~~~~~~~ii~~l~~~~~a~~~~el~~~~p~~GG~y~~~~~~ 94 (512)
+++||+++.+++++++++.++| +|++..++...+.+||.+.+++|+++++++++.+++++|+++++|++||.|.|++++
T Consensus 10 ~~l~r~L~~~~~~~l~ig~~IG-~Gif~~~g~~~~~~G~~~~~l~~~i~~~~~~~~~~~~aELas~~P~aGG~y~y~~~~ 88 (471)
T PRK11387 10 GQFKRTMKVRHLVMLSLGGVIG-TGLFFNTGYIISTTGAAGTLLAYLIGALVVYLVMQCLGELSVAMPETGAFHVYAARY 88 (471)
T ss_pred hhhhhcCcHHHHHHHHHHhhhh-hHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHh
Confidence 4689999999999999999999 999999999999999865899999999999999999999999999999999999999
Q ss_pred cCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccCchHHHHHHHHHHHHHHHHHHhchhhH
Q 010352 95 ASPKWGPFASWCCAWLETIGLIAGMGTQAYAGSQTLQSIILLCTGTNKDGGYFAPKWLFLCMYIGLTIIWAVLNTFALEV 174 (512)
Q Consensus 95 ~g~~~g~~~g~~~g~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~k~ 174 (512)
+||..||++||.+|+.+....+......+.+++..+ ++ .+.+. ..+++.++++.+|++|+|.
T Consensus 89 ----~g~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~---------p~--~~~~~---~~~~~~~~~~~in~~gvk~ 150 (471)
T PRK11387 89 ----LGPATGYTVAWLYWLTWTVALGSSLTAAGFCMQYWF---------PQ--VPVWP---WCLLFCALIFGLNVVSTRF 150 (471)
T ss_pred ----cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---------Cc--CcHHH---HHHHHHHHHHHHHHHhHHH
Confidence 777789999999999998888777666655544321 11 12222 2334456788999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhccc-----cccccccccccccccCCCCC-CCchhHHHHhhhhhhhhhccccccc
Q 010352 175 IAFIDIISMWWQVAGGLVIIIMLPLVALT-----TQSASYVFTHFEMSPEATGI-SSKPYAVILSFLVSQYSLYGYDSAA 248 (512)
Q Consensus 175 ~~~~~~~~~~~~i~~~~~~~i~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~f~G~e~~~ 248 (512)
.++.+.+++.+|++.++.+++.++..... .......++++ +..+| +++..++..++...+|+|.|+|.++
T Consensus 151 ~~~~~~~~~~~ki~~l~~~ii~g~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~g~~~~~~~~~~~~faf~G~e~~~ 226 (471)
T PRK11387 151 FAEGEFWFSLIKVVTILAFIVLGGAAIFGFIPMQDGSPAPGLRNL----TAEGWFPHGGLPILMTMVAVNFAFSGTELIG 226 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCccccc----CCCCCCcccHHHHHHHHHHHHHHHcCHHHHH
Confidence 99999999999999888777766443210 11111112333 22333 3334678888889999999999999
Q ss_pred hhhhhccCcccccchHHHHHHHHHHHHHHHHHHHHHHhccChhhhhcCCCcccCCCcHHHHHHHHhhcccCCcchhHHHH
Q 010352 249 HLTEETKGADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNETAGAFVPAQILYDAFHGRYHNSTGAIILL 328 (512)
Q Consensus 249 ~~~~E~k~P~k~ip~ai~~~~~~~~i~y~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 328 (512)
+.+||+|||+||+|||+..++.++.++|++..++..... |+++...+ ..| +.+.++.. |.++...++.
T Consensus 227 ~~a~E~knP~r~iPrAi~~~~~~~~~~y~~~~~~~~~~~-p~~~~~~~------~~p----~~~~~~~~-g~~~~~~ii~ 294 (471)
T PRK11387 227 IAAGETENPAKVIPVAIRTTIARLVIFFVGTVLVLAALI-PMQQAGVE------KSP----FVLVFEKV-GIPYAADIFN 294 (471)
T ss_pred HHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHheec-CccccCcc------CCh----HHHHHHHc-CCchHHHHHH
Confidence 999999999999999999999999999999999888888 55554332 123 33444443 6666888888
Q ss_pred HHHHHHHHHhHHHHHhhhhhhHHhhhcCCCCCcccccccccccCCchHHHHHHHHHHHHHHhcc-ccccHHHHHHHHHHH
Q 010352 329 IVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQLHPKHKVPSNAVWLCAAICIILGLP-ILKVNVVFTAITSIC 407 (512)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~sR~l~~ma~d~~lP~~~~f~~~~~~~~~P~~a~~~~~~i~~~~~~~-~~~~~~~~~~l~~~~ 407 (512)
+..+.+.+++.++.+++.||++++|||||.+| ++|+|+| |+++|+++++++.+.+++..+. ...+++.++.+.++.
T Consensus 295 ~~~~~s~~~~~~~~~~~~sR~l~a~ardg~lP--~~f~~~~-~~~~P~~Ail~~~~~~~l~~~~~~~~~~~~~~~l~~l~ 371 (471)
T PRK11387 295 FVILTAILSAANSGLYASGRMLWSLSNEGTLP--ACFARLT-KRGIPLTALSVSMLGGLLALFSSVVAPDTVFVALSAIS 371 (471)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHhcCCcC--HHHHHhC-CCCCcHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999 9999999 7899999999887766544332 123456788899999
Q ss_pred HHHHHHHHHHHHHHHHhhcccCc------cCCCcccCCchhhHHHHHHHHHHHHHHHh
Q 010352 408 TIGWVGGYAVPIFARMVMAEQKF------NAGPFYLGKASRPICLIAFLWICYTCSVF 459 (512)
Q Consensus 408 ~~~~~~~~~l~~~~~~~~r~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 459 (512)
+...++.|.+.+++.+++|||+. .+||||.| +.+.+++++++.+.+.++..
T Consensus 372 ~~~~li~y~~~~~~~i~lr~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~ 428 (471)
T PRK11387 372 GFAVVAVWLSICASHFMFRRRHLRDGKALSELAYRAP-WYPLTPILGFVLCLLACVGL 428 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccCC-CccHHHHHHHHHHHHHHHHH
Confidence 99999999999988887776532 25789998 88888888888777666544
No 8
>PRK10836 lysine transporter; Provisional
Probab=100.00 E-value=1.8e-52 Score=434.97 Aligned_cols=421 Identities=15% Similarity=0.160 Sum_probs=326.6
Q ss_pred cCCCcccccccchHHHHHHHHHHhhhhhhHHHHHHhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChhhHH
Q 010352 11 LGYKQELRREMTLFKTFAISFSTMTLFTGIIPLYGSSLLYAGPASLVWGWVVVSFFTWFVGLAMAEICSSFPTTGSLYFW 90 (512)
Q Consensus 11 ~~~~~~l~r~l~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~G~~~~~~~~ii~~l~~~~~a~~~~el~~~~p~~GG~y~~ 90 (512)
..+++++||+++.++.+++++|.++| +|++..++.+.+.+||..++++|+++++++++.+++|+|+++++|++||.|.|
T Consensus 7 ~~~~~~l~r~L~~~~~~~l~vG~~IG-sGif~~~g~~~~~aGp~~~l~a~~i~g~~~~~~al~~aEL~s~~P~sGg~y~y 85 (489)
T PRK10836 7 TTEAPGLRRELKARHLTMIAIGGSIG-TGLFVASGATISQAGPGGALLSYMLIGLMVYFLMTSLGELAAYMPVSGSFATY 85 (489)
T ss_pred cCCcccccccCcHHHHHHHHHhhhhh-hhhhHhhhHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH
Confidence 34557799999999999999999999 99999999999999996689999999999999999999999999999999999
Q ss_pred HhhccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccCchHHHHHHHHHHHHHHHHHHhc
Q 010352 91 AAHLASPKWGPFASWCCAWLETIGLIAGMGTQAYAGSQTLQSIILLCTGTNKDGGYFAPKWLFLCMYIGLTIIWAVLNTF 170 (512)
Q Consensus 91 ~~~~~g~~~g~~~g~~~g~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 170 (512)
+++. .|+..||++||.+|+.+....+........++...+ .+ .+.+ ....+++++++.+|++
T Consensus 86 ~~~~----~g~~~gf~~Gw~~~~~~~~~~a~~~~a~~~~~~~~~---------~~--~~~~---~~~~~~~~~~~~lN~~ 147 (489)
T PRK10836 86 GQNY----VEEGFGFALGWNYWYNWAVTIAVDLVAAQLVMSWWF---------PD--TPGW---IWSALFLGVIFLLNYI 147 (489)
T ss_pred HHHH----cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC---------CC--CchH---HHHHHHHHHHHHHHHH
Confidence 9999 666679999999999877766654444433333211 11 1222 2344566678899999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcc--ccccccccccccccccCCCCCCCchhHHHHhhhhhhhhhccccccc
Q 010352 171 ALEVIAFIDIISMWWQVAGGLVIIIMLPLVAL--TTQSASYVFTHFEMSPEATGISSKPYAVILSFLVSQYSLYGYDSAA 248 (512)
Q Consensus 171 g~k~~~~~~~~~~~~~i~~~~~~~i~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~ 248 (512)
|+|..+++|.+++..|+..++.+++.++.... .....+..++++ . ++...++++..++..+....+|+|.|+|.++
T Consensus 148 gv~~~~~~~~~~~~~ki~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~g~~~~~~~~~~~~faf~G~e~~~ 225 (489)
T PRK10836 148 SVRGFGEAEYWFSLIKVTTVIVFIIVGVLMIIGIFKGAEPAGWSNW-T-IGDAPFAGGFAAMIGVAMIVGFSFQGTELIG 225 (489)
T ss_pred cchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCccccC-C-CCCCCCcccHHHHHHHHHHHHHHHccHHHHH
Confidence 99999999999999999988877765544321 111111222333 1 0111233334456666666789999999999
Q ss_pred hhhhhccCcccccchHHHHHHHHHHHHHHHHHHHHHHhccChhhh--hcCCCcccCCCcHHHHHHHHhhcccCCcchhHH
Q 010352 249 HLTEETKGADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYL--YDKSNETAGAFVPAQILYDAFHGRYHNSTGAII 326 (512)
Q Consensus 249 ~~~~E~k~P~k~ip~ai~~~~~~~~i~y~~~~~~~~~~~~~~~~l--~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 326 (512)
+.+||+|||+||+|||+..++..+.++|++........+ ++++. ..++..+..+ +++...++.. |.++...+
T Consensus 226 ~~a~E~knP~r~iPrAi~~~~~~v~~~Yvl~~~~~~~~v-p~~~~~~~~~~~~~~~~----sp~~~~~~~~-g~~~~~~i 299 (489)
T PRK10836 226 IAAGESEDPAKNIPRAVRQVFWRILLFYVFAILIISLII-PYTDPSLLRNDVKDISV----SPFTLVFQHA-GLLSAAAV 299 (489)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHheec-CCCChhhhccccccccC----CcHHHHHHHc-CChhHHHH
Confidence 999999999999999999999999999999999888887 43332 1111100002 2344445444 55556788
Q ss_pred HHHHHHHHHHHhHHHHHhhhhhhHHhhhcCCCCCcccccccccccCCchHHHHHHHHHHHHHHhcc-ccccHHHHHHHHH
Q 010352 327 LLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQLHPKHKVPSNAVWLCAAICIILGLP-ILKVNVVFTAITS 405 (512)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~sR~l~~ma~d~~lP~~~~f~~~~~~~~~P~~a~~~~~~i~~~~~~~-~~~~~~~~~~l~~ 405 (512)
+.+..+.+.+++.|+.+++.+|++|+|||||.+| ++|+|+| |+++|++|++++.+++.+..+. ..++...++.+.+
T Consensus 300 i~~~il~a~~~~~n~~~~~~sR~l~a~Ardg~lP--~~~~kv~-~~~~P~~All~~~~~~~l~~l~~~~~~~~~~~~l~~ 376 (489)
T PRK10836 300 MNAVILTAVLSAGNSGMYASTRMLYTLACDGKAP--RIFAKLS-RGGVPRNALYATTVIAGLCFLTSMFGNQTVYLWLLN 376 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcC--HHHHhhC-CCCCcHHHHHHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 8888999999999999999999999999999999 9999999 7899999999999998876653 2344567888999
Q ss_pred HHHHHHHHHHHHHHHHHHhhccc-----Ccc-CCCcccCCchhhHHHHHHHHHHHHHHHhcCC
Q 010352 406 ICTIGWVGGYAVPIFARMVMAEQ-----KFN-AGPFYLGKASRPICLIAFLWICYTCSVFLLP 462 (512)
Q Consensus 406 ~~~~~~~~~~~l~~~~~~~~r~~-----~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 462 (512)
+.+...++.|.+.+++.+++||+ ++. +||||.| .+|..++++++.+.++++...+.
T Consensus 377 ~~~~~~~~~y~~~~~a~l~~R~~~~~~~~~~~~~p~~~p-~~p~~~~~~~~~~~~~~~~~~~~ 438 (489)
T PRK10836 377 TSGMTGFIAWLGIAISHYRFRRGYVLQGHDLNDLPYRSG-FFPLGPIFAFVLCLIITLGQNYE 438 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCCCcCC-CccHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999988874 343 4799999 88999998888888877755443
No 9
>PRK11357 frlA putative fructoselysine transporter; Provisional
Probab=100.00 E-value=3.1e-52 Score=429.39 Aligned_cols=404 Identities=17% Similarity=0.142 Sum_probs=321.9
Q ss_pred CcccccccchHHHHHHHHHHhhhhhhHHHHHHhhhhcCC-chhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChhhHHHh
Q 010352 14 KQELRREMTLFKTFAISFSTMTLFTGIIPLYGSSLLYAG-PASLVWGWVVVSFFTWFVGLAMAEICSSFPTTGSLYFWAA 92 (512)
Q Consensus 14 ~~~l~r~l~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~G-~~~~~~~~ii~~l~~~~~a~~~~el~~~~p~~GG~y~~~~ 92 (512)
++++||++++++.++++++.++| +|++...+.....+| +...+++|+++++++++.+++|+|+++.+|++||.|.|++
T Consensus 3 ~~~L~r~l~~~~~~~l~vg~~ig-~Gif~~~g~~~~~~G~~~~~~l~~li~~v~~l~~al~~aEl~s~~P~~GG~y~y~~ 81 (445)
T PRK11357 3 SQELQRKLGFWAVLAIAVGTTVG-SGIFVSVGEVAKAAGTPWLTVLAFVIGGLIVIPQMCVYAELSTAYPENGADYVYLK 81 (445)
T ss_pred cccccccccHHHHHHHHHHhhee-chhccchHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCceeeHH
Confidence 46799999999999999999998 999998887666555 4448899999999999999999999999999999999999
Q ss_pred hccCCCCCchhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccCchHHHHHHHHHHHHHHHHHHhch
Q 010352 93 HLASPKWGPFASWCCAWLET-IGLIAGMGTQAYAGSQTLQSIILLCTGTNKDGGYFAPKWLFLCMYIGLTIIWAVLNTFA 171 (512)
Q Consensus 93 ~~~g~~~g~~~g~~~g~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g 171 (512)
+. +||..||+++|..+ .......+..+....+++.... +. ++.....+.++++.+++.+|++|
T Consensus 82 ~~----~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~----------~~--~~~~~~~~~~~~~~~~~~ln~~g 145 (445)
T PRK11357 82 NA----GSRPLAFLSGWASFWANDAPSLSIMALAIVSNLGFLT----------PI--DPLLGKFIAAGLIIAFMLLHLRS 145 (445)
T ss_pred Hh----cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----------CC--chHHHHHHHHHHHHHHHHHHHhh
Confidence 99 67777999999754 4456667777778888776532 11 23334556667777889999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccccccccccccCCCCCCCchhHHHHhhhhhhhhhccccccchhh
Q 010352 172 LEVIAFIDIISMWWQVAGGLVIIIMLPLVALTTQSASYVFTHFEMSPEATGISSKPYAVILSFLVSQYSLYGYDSAAHLT 251 (512)
Q Consensus 172 ~k~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~~ 251 (512)
+|..+|+|++++.+|++.++++++.++......+ +..+ . . ...+..+.+.++..++...+|+|.|+|.+++++
T Consensus 146 v~~~~~v~~~~~~~~~~~l~~~ii~g~~~~~~~~---~~~~-~-~--~~~~~~g~~~~~~~~~~~~~~af~G~e~~~~~a 218 (445)
T PRK11357 146 VEGGAAFQTLITIAKIIPFTIVIGLGIFWFKAEN---FAAP-T-T--TAIGATGSFMALLAGISATSWSYTGMASICYMT 218 (445)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcc---ccCC-C-c--ccccccchHHHHHHHHHHHHHHHhhHHHHHhhH
Confidence 9999999999999999988877776654322111 1100 0 0 111111114568888999999999999999999
Q ss_pred hhccCcccccchHHHHHHHHHHHHHHHHHHHHHHhccChhhhhcCCCcccCCCcHHHHHHHHhhcccCCcchhHHHHHHH
Q 010352 252 EETKGADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNETAGAFVPAQILYDAFHGRYHNSTGAIILLIVI 331 (512)
Q Consensus 252 ~E~k~P~k~ip~ai~~~~~~~~i~y~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 331 (512)
||+|||+||+|||+..++.++.++|++.+.+..... +++++.+++ .|..+.+... + ..|.. ...++.+..
T Consensus 219 ~E~k~P~r~iP~Ai~~~~~i~~~~Y~l~~~~~~~~~-~~~~l~~~~------~p~~~~~~~~-~-~~g~~-~~~~~~~~~ 288 (445)
T PRK11357 219 GEIKNPGKTMPRALIGSCLLVLVLYTLLALVISGLM-PFDKLANSE------TPISDALTWI-P-ALGST-AGIFVAITA 288 (445)
T ss_pred HHhcCccccchHHHHHHHHHHHHHHHHHHHHHHhcC-CHHHHhcCC------chHHHHHHHH-H-hcchH-HHHHHHHHH
Confidence 999999999999999999999999999999988887 788876543 2443433332 1 11333 456666778
Q ss_pred HHHHHHhHHHHHhhhhhhHHhhhcCCCCCcccccccccccCCchHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHH
Q 010352 332 WGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQLHPKHKVPSNAVWLCAAICIILGLPILKVNVVFTAITSICTIGW 411 (512)
Q Consensus 332 ~~~~~~~~~~~~~~~sR~l~~ma~d~~lP~~~~f~~~~~~~~~P~~a~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~ 411 (512)
+++.+++.++...+.+|++++|+|||.+| ++|+|+|||+++|+++++++.+++.++.+. .+++.+.++.+...
T Consensus 289 ~~~~~~~~~~~~~~~sR~~~a~ardg~lp--~~~~~v~~~~~tP~~a~l~~~~~~~~~~~~-----~~~~~l~~~~~~~~ 361 (445)
T PRK11357 289 MIVILGSLSSCVMYQPRLEYAMAKDNLFF--KCFGHVHPKYNTPDVSIILQGALGIFFIFV-----SDLTSLLGYFTLVM 361 (445)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHhcCCch--HHHHHhCCCCCCCHHHHHHHHHHHHHHHHH-----cCHHHHHHHHHHHH
Confidence 88899999999999999999999999999 999999999999999999999999887652 35677888888888
Q ss_pred HHHHHHHHHHHHhhcccCccCCCcccCCchhhHHHHHHHHHHHHHHHh
Q 010352 412 VGGYAVPIFARMVMAEQKFNAGPFYLGKASRPICLIAFLWICYTCSVF 459 (512)
Q Consensus 412 ~~~~~l~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 459 (512)
.+.|.+...+.+++|||++.+||||.| ..+.+++++++.++++.+..
T Consensus 362 ~~~~~~~~~a~i~lr~~~~~~~~~k~p-~~~~~~~~~~~~~~~~~~~~ 408 (445)
T PRK11357 362 CFKNTLTFGSIIWCRKRDDYKPLWRTP-AFGLMTTLAIASSLILVAST 408 (445)
T ss_pred HHHHHHHHHHHheeecCCCCCCCcccC-CchHHHHHHHHHHHHHHHHH
Confidence 888998888888888777778899999 88888888888777776544
No 10
>PRK10238 aromatic amino acid transporter; Provisional
Probab=100.00 E-value=8e-52 Score=426.10 Aligned_cols=411 Identities=17% Similarity=0.213 Sum_probs=336.6
Q ss_pred CcccccccchHHHHHHHHHHhhhhhhHHHHHHhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChhhHHHhh
Q 010352 14 KQELRREMTLFKTFAISFSTMTLFTGIIPLYGSSLLYAGPASLVWGWVVVSFFTWFVGLAMAEICSSFPTTGSLYFWAAH 93 (512)
Q Consensus 14 ~~~l~r~l~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~G~~~~~~~~ii~~l~~~~~a~~~~el~~~~p~~GG~y~~~~~ 93 (512)
.+++||+++.++...++++.++| +|++..++...+.+||. ++++|+++++++++.+++++|+++++|.+||.|.|++|
T Consensus 7 ~~~l~r~L~~~~~~~i~ig~~IG-sGif~~~g~~~~~~Gp~-~i~~~~i~gi~~~~v~~s~aEl~s~~P~aGg~y~~~~~ 84 (456)
T PRK10238 7 GEQLKRGLKNRHIQLIALGGAIG-TGLFLGSASVIQSAGPG-IILGYAIAGFIAFLIMRQLGEMVVEEPVAGSFSHFAYK 84 (456)
T ss_pred chhhhccCcHHHHHHHHhhcccc-chHHHhhHHHHHhcCcH-HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHH
Confidence 34689999999999999999999 99999999999999996 99999999999999999999999999999999999999
Q ss_pred ccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccCchHHHHHHHHHHHHHHHHHHhchhh
Q 010352 94 LASPKWGPFASWCCAWLETIGLIAGMGTQAYAGSQTLQSIILLCTGTNKDGGYFAPKWLFLCMYIGLTIIWAVLNTFALE 173 (512)
Q Consensus 94 ~~g~~~g~~~g~~~g~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~k 173 (512)
. +||..||++||.+++.+....+.+....+++++..+ ++ .+.|. ..++++++.+.+|++|+|
T Consensus 85 ~----~g~~~gf~~Gw~~~~~~~~~~~~~~~~~~~~~~~~~---------p~--~~~~~---~~~i~~~~~~~lN~~gv~ 146 (456)
T PRK10238 85 Y----WGSFAGFASGWNYWVLYVLVAMAELTAVGKYIQFWY---------PE--IPTWV---SAAVFFVVINAINLTNVK 146 (456)
T ss_pred H----cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---------Cc--CcHHH---HHHHHHHHHHHHHHHhHH
Confidence 9 888889999999999999999998888888876543 11 23333 344556788999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhh-ccccccccccccccccccCCCCC-CCchhHHHHhhhhhhhhhccccccchhh
Q 010352 174 VIAFIDIISMWWQVAGGLVIIIMLPLV-ALTTQSASYVFTHFEMSPEATGI-SSKPYAVILSFLVSQYSLYGYDSAAHLT 251 (512)
Q Consensus 174 ~~~~~~~~~~~~~i~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~f~G~e~~~~~~ 251 (512)
..++++.+++.+|+..++++++.++.. ..........++++ . +.++| +++..++..++...+|+|.|+|.+++.+
T Consensus 147 ~~~~~~~~~~~iki~~i~~~ii~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~g~~~~~~~~~~~~~af~G~e~~~~~a 223 (456)
T PRK10238 147 VFGEMEFWFAIIKVIAVVAMIIFGGWLLFSGNGGPQATVSNL-W--DQGGFLPHGFTGLVMMMAIIMFSFGGLELVGITA 223 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcccccc-C--CCCCCccccHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 999999999999999887776654332 11111111222333 2 23344 3334567788888999999999999999
Q ss_pred hhccCcccccchHHHHHHHHHHHHHHHHHHHHHHhccChhhhhcCCCcccCCCcHHHHHHHHhhcccCCcchhHHHHHHH
Q 010352 252 EETKGADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNETAGAFVPAQILYDAFHGRYHNSTGAIILLIVI 331 (512)
Q Consensus 252 ~E~k~P~k~ip~ai~~~~~~~~i~y~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 331 (512)
||+|||+|++|||+..++..+.++|++......... |++++.++ +.|... .+... |.++...++...+
T Consensus 224 eE~knP~r~iPrAi~~~~~~i~~~y~~~~~~~~~~~-p~~~l~~~------~sP~~~----~~~~~-g~~~~~~i~~~~i 291 (456)
T PRK10238 224 AEADNPEQSIPKATNQVIYRILIFYIGSLAVLLSLM-PWTRVTAD------TSPFVL----IFHEL-GDTFVANALNIVV 291 (456)
T ss_pred HhhcChhhHHHHHHHHHHHHHHHHHHHHHHHHheec-ChhccCCC------CCcHHH----HHHHc-CChHHHHHHHHHH
Confidence 999999999999999999999999998877766666 77776433 234433 33333 6666777888888
Q ss_pred HHHHHHhHHHHHhhhhhhHHhhhcCCCCCcccccccccccCCchHHHHHHHHHHHHHHhcc-ccccHHHHHHHHHHHHHH
Q 010352 332 WGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQLHPKHKVPSNAVWLCAAICIILGLP-ILKVNVVFTAITSICTIG 410 (512)
Q Consensus 332 ~~~~~~~~~~~~~~~sR~l~~ma~d~~lP~~~~f~~~~~~~~~P~~a~~~~~~i~~~~~~~-~~~~~~~~~~l~~~~~~~ 410 (512)
+.+.+++.++.+.+.||++|+|||||.+| ++|+|+| |+++|++|++++.+++.+..+. ...+...++.+.++++..
T Consensus 292 ~~~~~s~~~~~~~~~sR~l~a~ardg~lP--~~f~kv~-~~~~P~~Ail~~~~i~~l~~l~~~~~~~~~f~~l~~~~~~~ 368 (456)
T PRK10238 292 LTAALSVYNSCVYCNSRMLFGLAQQGNAP--KALASVD-KRGVPVNTILVSALVTALCVLINYLAPESAFGLLMALVVSA 368 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCcc--HHHHhhC-cCCCcHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999 9999999 7899999999999998876554 356678899999999999
Q ss_pred HHHHHHHHHHHHHhhcccCcc---CCCcccCCchhhHHHHHHHHHHHHHHHhcCCC
Q 010352 411 WVGGYAVPIFARMVMAEQKFN---AGPFYLGKASRPICLIAFLWICYTCSVFLLPT 463 (512)
Q Consensus 411 ~~~~~~l~~~~~~~~r~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (512)
.++.|.+++++.+++||+..+ +++++.| +++..+++++.++.+.++...+.+
T Consensus 369 ~~i~y~~~~~~~l~~r~~~~~~~~~~~~~~~-~~p~~~~~~~~~~~~~~~~~~~~~ 423 (456)
T PRK10238 369 LVINWAMISLAHMKFRRAKQEQGVVTRFPAL-LYPLGNWICLLFMAAVLVIMLMTP 423 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCCcCC-CccHHHHHHHHHHHHHHHHHHHcc
Confidence 999999999999988875432 3456666 899999999999999888876653
No 11
>PRK10580 proY putative proline-specific permease; Provisional
Probab=100.00 E-value=2.1e-51 Score=424.01 Aligned_cols=439 Identities=14% Similarity=0.193 Sum_probs=341.4
Q ss_pred CCCcccccccchHHHHHHHHHHhhhhhhHHHHHHhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChhhHHH
Q 010352 12 GYKQELRREMTLFKTFAISFSTMTLFTGIIPLYGSSLLYAGPASLVWGWVVVSFFTWFVGLAMAEICSSFPTTGSLYFWA 91 (512)
Q Consensus 12 ~~~~~l~r~l~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~G~~~~~~~~ii~~l~~~~~a~~~~el~~~~p~~GG~y~~~ 91 (512)
++++++||+++.++.++++++.++| +|++..++.+.+.+||. ++++|++++++.++.+++++|+++++|++||.|.|+
T Consensus 2 ~~~~~l~r~L~~~~~~~i~vg~~IG-~Gif~~~g~~~~~aG~~-~~l~~~i~~i~~~~~a~~~aEl~s~~P~~Gg~y~y~ 79 (457)
T PRK10580 2 ESKNKLKRGLSTRHIRFMALGSAIG-TGLFYGSADAIKMAGPS-VLLAYIIGGVAAYIIMRALGEMSVHNPAASSFSRYA 79 (457)
T ss_pred CCCccccccCcHHHHHHHHHHHHHH-HHHHHHHHHHHHHhChH-HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 4556799999999999999999999 99999999999999997 899999999999999999999999999999999999
Q ss_pred hhccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccCchHHHHHHHHHHHHHHHHHHhch
Q 010352 92 AHLASPKWGPFASWCCAWLETIGLIAGMGTQAYAGSQTLQSIILLCTGTNKDGGYFAPKWLFLCMYIGLTIIWAVLNTFA 171 (512)
Q Consensus 92 ~~~~g~~~g~~~g~~~g~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g 171 (512)
+|. +||.+||++||.+++.+....+......+.+....++ + .+.+. ..++++++.+.+|++|
T Consensus 80 ~~~----~G~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~---------~--~~~~~---~~~~~~~l~~~ln~~g 141 (457)
T PRK10580 80 QEN----LGPLAGYITGWTYCFEILIVAIADVTAFGIYMGVWFP---------T--VPHWI---WVLSVVLIICAVNLMS 141 (457)
T ss_pred HHH----cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC---------C--CChHH---HHHHHHHHHHHHHHcc
Confidence 999 7777899999999999887777777777777654321 1 12222 2445566789999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhhh---ccccccccccccc-cccccCCCCCCCchhHHHHhhhhhhhhhcccccc
Q 010352 172 LEVIAFIDIISMWWQVAGGLVIIIMLPLV---ALTTQSASYVFTH-FEMSPEATGISSKPYAVILSFLVSQYSLYGYDSA 247 (512)
Q Consensus 172 ~k~~~~~~~~~~~~~i~~~~~~~i~~~~~---~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~ 247 (512)
+|..+++|.+++.+|+..++++++.++.. ...+.......++ + . +...++++..+++.++...+|+|.|+|.+
T Consensus 142 v~~~~~~~~~~~~~~~~~l~~~ii~~~~i~~~~~~~~~~~~~~~~~~-~--~~~~~~~g~~~~~~~~~~~~fsf~G~e~~ 218 (457)
T PRK10580 142 VKVFGELEFWFSFFKVATIIIMIVAGIGIIIWGIGNGGQPTGIHNLW-S--NGGFFSNGWLGMVMSLQMVMFAYGGIEII 218 (457)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCccccC-C--CCCCCCcchHHHHHHHHHHHHHHhCHHHH
Confidence 99999999999999999888776654321 1111111111122 2 1 22334554567888999999999999999
Q ss_pred chhhhhccCcccccchHHHHHHHHHHHHHHHHHHHHHHhccChhhhhcCCCcccCCCcHHHHHHHHhhcccCCcchhHHH
Q 010352 248 AHLTEETKGADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNETAGAFVPAQILYDAFHGRYHNSTGAIIL 327 (512)
Q Consensus 248 ~~~~~E~k~P~k~ip~ai~~~~~~~~i~y~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 327 (512)
++.+||+|||+||+|||+..+...+.++|++......... |++++..+ +.|.. ..++.. |.++...++
T Consensus 219 ~~~a~E~knP~k~iPrAi~~~~~~~~~~y~~~~~~~~~~~-p~~~i~~~------~~p~~----~~~~~~-g~~~~~~~~ 286 (457)
T PRK10580 219 GITAGEAKDPEKSIPRAINSVPMRILVFYVGTLFVIMSIY-PWNQVGTN------GSPFV----LTFQHM-GITFAASIL 286 (457)
T ss_pred HHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHheec-ccCCCCcc------CChHH----HHHHHc-CChhHHHHH
Confidence 9999999999999999999999999999999988887777 66666432 33432 223222 666677778
Q ss_pred HHHHHHHHHHhHHHHHhhhhhhHHhhhcCCCCCcccccccccccCCchHHHHHHHHHHHHHHhcc-ccccHHHHHHHHHH
Q 010352 328 LIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQLHPKHKVPSNAVWLCAAICIILGLP-ILKVNVVFTAITSI 406 (512)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~sR~l~~ma~d~~lP~~~~f~~~~~~~~~P~~a~~~~~~i~~~~~~~-~~~~~~~~~~l~~~ 406 (512)
.+..+.+.+++.++++.+.+|++++|||||.+| ++|+|+| |+++|++|++++.++..+..+. ...+.+.++.+.++
T Consensus 287 ~~~~~~~~~~~~~~~~~~~sR~~~~~ardg~lP--~~~~kv~-~~~~P~~Ai~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 363 (457)
T PRK10580 287 NFVVLTASLSAINSDVFGVGRMLHGMAEQGSAP--KIFSKTS-RRGIPWVTVLVMTTALLFAVYLNYIMPENVFLVIASL 363 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcC--HHHHhhC-CCCCcHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHH
Confidence 888888999999999999999999999999999 9999999 7899999999997765543322 23445678999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcccC----ccCCCcccCCchhhHHHHHHHHHHHHHHHh-cCCCCCCCCCCCccchhHHHHH
Q 010352 407 CTIGWVGGYAVPIFARMVMAEQK----FNAGPFYLGKASRPICLIAFLWICYTCSVF-LLPTFYPISWDTFNYAPVALGV 481 (512)
Q Consensus 407 ~~~~~~~~~~l~~~~~~~~r~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 481 (512)
++....+.|.+++++.+++|||. .+++|||.| +++..+++++.++.+.++.. .+|+ .....+....
T Consensus 364 ~~~~~~~~y~~~~~~~~~lr~~~~~~~~~~~~f~~~-~~~~~~~~~~~~~~~~~~~~~~~p~--------~~~~~~~~~~ 434 (457)
T PRK10580 364 ATFATVWVWIMILLSQIAFRRRLPPEEVKALKFKVP-GGVATTIGGLIFLVFIIGLIGYHPD--------TRISLYVGFA 434 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccC-CccHHHHHHHHHHHHHHHHHHHCcc--------HHHHHHHHHH
Confidence 99999999999999999888652 234689999 99999999999998887765 3331 1112344444
Q ss_pred HHHHHhhhheeeccee
Q 010352 482 GLGLIMLWWLLDARKW 497 (512)
Q Consensus 482 ~l~~~~~~~~~~~~~~ 497 (512)
+.+++.+.|..++|++
T Consensus 435 ~~~~~~~~y~~~~~~~ 450 (457)
T PRK10580 435 WIVLLLIGWMFKRRHD 450 (457)
T ss_pred HHHHHHHHHHHHhccc
Confidence 5555555555554433
No 12
>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=3.7e-52 Score=410.17 Aligned_cols=449 Identities=17% Similarity=0.227 Sum_probs=374.3
Q ss_pred ccccccchHHHHHHHHHHhhhhhhHHHHHHhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChhhHHHhhcc
Q 010352 16 ELRREMTLFKTFAISFSTMTLFTGIIPLYGSSLLYAGPASLVWGWVVVSFFTWFVGLAMAEICSSFPTTGSLYFWAAHLA 95 (512)
Q Consensus 16 ~l~r~l~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~G~~~~~~~~ii~~l~~~~~a~~~~el~~~~p~~GG~y~~~~~~~ 95 (512)
++||+|+.+++..+++|..+| .|++...+.++..+||++++++|++.+.++.+++.+..||++.+|.+|+...|++|..
T Consensus 41 ~lkR~LK~RHl~MIAiGG~IG-TGLfvgsG~~l~~aGP~g~li~y~i~G~~vy~vm~sLGEma~~~P~sGsF~~ya~rfv 119 (541)
T COG0833 41 ELKRSLKSRHLQMIAIGGAIG-TGLFVGSGKALSQAGPAGLLIAYLIIGIMVYFVMQSLGELAVFYPVSGSFSTYATRFV 119 (541)
T ss_pred hhhhhhhHHHHHHHHhccccc-cceeeecchhhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchhhhhhhhc
Confidence 599999999999999999999 9999999999999999999999999999999999999999999999999999999995
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccCchHHHHHHHHHHHHHHHHHHhchhhHH
Q 010352 96 SPKWGPFASWCCAWLETIGLIAGMGTQAYAGSQTLQSIILLCTGTNKDGGYFAPKWLFLCMYIGLTIIWAVLNTFALEVI 175 (512)
Q Consensus 96 g~~~g~~~g~~~g~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~k~~ 175 (512)
+ |-+||..||.||+.|....+.+..+.+..+++-++ +. .+++.+.. ++.+++..+|++|+|.+
T Consensus 120 d----pa~GFa~gWnYw~~w~v~~~~El~aa~~vi~yW~p---------~~-v~~~~w~~---iF~~~i~~iN~~~Vk~f 182 (541)
T COG0833 120 D----PAFGFALGWNYWLNWAVTLPLELTAASLVIQYWFP---------DT-VPPWIWIA---IFLVLIFLLNLFGVKGF 182 (541)
T ss_pred C----chHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhcC---------CC-CChHHHHH---HHHHHHHHHHHhccccc
Confidence 5 44599999999999999999999999888886431 11 35555555 55566799999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhcccccc-ccccccccccccCCCCCCCchhHHHHhhhhhhhhhccccccchhhhhc
Q 010352 176 AFIDIISMWWQVAGGLVIIIMLPLVALTTQS-ASYVFTHFEMSPEATGISSKPYAVILSFLVSQYSLYGYDSAAHLTEET 254 (512)
Q Consensus 176 ~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~~~E~ 254 (512)
+..+.++..+|++.++.+++.++....+..+ ......++-. ++..+.+++.++...+..+.|+|.|.|.+...++|.
T Consensus 183 GE~Efw~s~iKV~~ii~Fii~gii~~~Gg~~~~~~ig~~yw~--~pg~F~~gf~g~~~v~v~a~Fsf~GtElvgiaAgEs 260 (541)
T COG0833 183 GETEFWFSSIKVLTIIGFIILGIIIICGGGPTHGYIGFNYWH--DPGAFAGGFKGFCSVFVIAAFSFSGTELVGLAAGES 260 (541)
T ss_pred ceehHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcceeeec--CCCCCCcchHHHHHHHhhheeeeeceeeeeeeeccc
Confidence 9999999999999999999988776433222 2333333312 455677788999999999999999999999999999
Q ss_pred cCcccccchHHHHHHHHHHHHHHHHHHHHHHhcc-ChhhhhcCCCcccCCCcHHHHHHHHhhcccCCcchhHHHHHHHHH
Q 010352 255 KGADKTGPIAILSSIGIISIFGWALILALCFSIQ-DFSYLYDKSNETAGAFVPAQILYDAFHGRYHNSTGAIILLIVIWG 333 (512)
Q Consensus 255 k~P~k~ip~ai~~~~~~~~i~y~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 333 (512)
|||+|++|||+.-....+.++|++..+.+...+| +.+++.+++. .....+|+..++.+. |.+....+++++++.
T Consensus 261 ~nP~K~iPkAik~vfwRIl~FYi~si~~ig~lvPy~dp~Ll~~~~----~~~~~SPFvia~~~~-Gi~~~~~imNaVIL~ 335 (541)
T COG0833 261 ENPRKSIPKAIKQVFWRILLFYILSIFVIGLLVPYNDPRLLGNSS----SGVAASPFVIAIKNA-GIPVAASIMNAVILT 335 (541)
T ss_pred CCchhhhHHHHHHHHHHHHHHHHHHHHHheEEccCCCcccccCCc----CCccCCChhHhHHhc-CCccchHHHHHHHHH
Confidence 9999999999999999999999999999999995 2334544332 122335778888877 888899999999999
Q ss_pred HHHHhHHHHHhhhhhhHHhhhcCCCCCcccccccccccCCchHHHHHHHHHHHHHHhccc-cccHHHHHHHHHHHHHHHH
Q 010352 334 SFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQLHPKHKVPSNAVWLCAAICIILGLPI-LKVNVVFTAITSICTIGWV 412 (512)
Q Consensus 334 ~~~~~~~~~~~~~sR~l~~ma~d~~lP~~~~f~~~~~~~~~P~~a~~~~~~i~~~~~~~~-~~~~~~~~~l~~~~~~~~~ 412 (512)
+.+++.|+.++++||++|+||+||..| |.|+|+| |+|+|++|++++.+++++..+-. ......|+++.++.++...
T Consensus 336 svlSa~NS~lYasSR~L~sLA~~g~AP--k~f~~~~-r~GvP~~al~vt~~fg~lafl~~~~~~~~vf~wL~~isg~s~~ 412 (541)
T COG0833 336 SVLSAANSGLYASSRMLYSLAKQGKAP--KIFAKVD-RRGVPLVALLVTLLFGLLAFLNSSFKETTVFNWLLNISGLSGF 412 (541)
T ss_pred HHHHHhhccchHHHHHHHHHHhcCCCc--hHHHhhC-CCCCchHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHH
Confidence 999999999999999999999999999 9999999 99999999999999998755432 2344599999999999999
Q ss_pred HHHHHHHHHHHhhccc------CccCCCcccCCchhhHHHHHHHHHHHHHHHhcCCCCCCCCCC--CccchhHHHHHHHH
Q 010352 413 GGYAVPIFARMVMAEQ------KFNAGPFYLGKASRPICLIAFLWICYTCSVFLLPTFYPISWD--TFNYAPVALGVGLG 484 (512)
Q Consensus 413 ~~~~l~~~~~~~~r~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~ 484 (512)
+.|+.++++.+|+||. ..++-|||.| ++|..++.+++.+.++++...+....|.... ++.-.+..+-++++
T Consensus 413 i~W~~I~~shirFR~A~~~QG~s~~~L~yks~-~~p~g~~~~~~~~~li~i~q~y~af~p~~~~~~~F~~~Yl~~pi~i~ 491 (541)
T COG0833 413 IAWGSICLSHIRFRRAMKAQGRSLDELPYKSP-FGPYGPIYGLILCILILIGQGYVAFFPIGFSAGDFFAAYLGLPIFIA 491 (541)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCChhhcCccCC-CccHHHHHHHHHHHHHHHHcchheeecCCccHHHHHHHHHHHHHHHH
Confidence 9999999999999853 1345689999 9999999999999999999888877774444 33223344444444
Q ss_pred HHhhhheee
Q 010352 485 LIMLWWLLD 493 (512)
Q Consensus 485 ~~~~~~~~~ 493 (512)
.-+.|.+.+
T Consensus 492 ~y~~yk~~~ 500 (541)
T COG0833 492 IYIGYKLYK 500 (541)
T ss_pred HHHHheeEe
Confidence 444444433
No 13
>PRK10746 putative transport protein YifK; Provisional
Probab=100.00 E-value=1.8e-51 Score=423.31 Aligned_cols=410 Identities=18% Similarity=0.179 Sum_probs=332.4
Q ss_pred CcccccccchHHHHHHHHHHhhhhhhHHHHHHhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChhhHHHhh
Q 010352 14 KQELRREMTLFKTFAISFSTMTLFTGIIPLYGSSLLYAGPASLVWGWVVVSFFTWFVGLAMAEICSSFPTTGSLYFWAAH 93 (512)
Q Consensus 14 ~~~l~r~l~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~G~~~~~~~~ii~~l~~~~~a~~~~el~~~~p~~GG~y~~~~~ 93 (512)
++++||+++.++...+++|.++| +|++..++.+++.+||. ++++|++++++.++.+++++|+++.+|++||.|.|++|
T Consensus 5 ~~~l~r~L~~~~~~~i~ig~~IG-tGlf~~~g~~l~~aGp~-~~l~~~i~g~~~~~v~~~~aEl~~~~P~sGg~~~y~~~ 82 (461)
T PRK10746 5 KPELQRGLEARHIELIALGGTIG-VGLFMGAASTLKWAGPS-VLLAYIIAGLFVFFIMRSMGEMLFLEPVTGSFAVYAHR 82 (461)
T ss_pred chHHhccCcHHHHHHHHHHhhhh-hhHHHHhHHHHHhcChH-HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHH
Confidence 44689999999999999999999 99999999999999997 99999999999999999999999999999999999999
Q ss_pred ccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccCchHHHHHHHHHHHHHHHHHHhchhh
Q 010352 94 LASPKWGPFASWCCAWLETIGLIAGMGTQAYAGSQTLQSIILLCTGTNKDGGYFAPKWLFLCMYIGLTIIWAVLNTFALE 173 (512)
Q Consensus 94 ~~g~~~g~~~g~~~g~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~k 173 (512)
. +||.+||.+||.+|+.+....+.+....+.+++..+ ++ .+.+. ...+++++++.+|++|+|
T Consensus 83 ~----~g~~~Gf~~gw~~~~~~~~~~~~~~~a~~~~l~~~~---------p~--~~~~~---~~~~~~~~~~~lN~~gv~ 144 (461)
T PRK10746 83 Y----MSPFFGYLTAWSYWFMWMAVGISEITAIGVYVQFWF---------PE--MAQWI---PALIAVALVALANLAAVR 144 (461)
T ss_pred H----hCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---------CC--CchHH---HHHHHHHHHHHHHHHhHH
Confidence 9 666779999999999998888888887777776543 11 22332 334556778889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhh--cc-ccccccccccccccccCCCC-CCCchhHHHHhhhhhhhhhccccccch
Q 010352 174 VIAFIDIISMWWQVAGGLVIIIMLPLV--AL-TTQSASYVFTHFEMSPEATG-ISSKPYAVILSFLVSQYSLYGYDSAAH 249 (512)
Q Consensus 174 ~~~~~~~~~~~~~i~~~~~~~i~~~~~--~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~f~G~e~~~~ 249 (512)
..+++|.+++.+|+..++++++.++.. .. .++.....++++ . +..+ .+++..++..++...+|+|.|+|.++.
T Consensus 145 ~~~~~e~~~~~~ki~~i~~~ii~~~~~~~~~~~~~~~~~~~~~~-~--~~~g~~~~g~~g~~~~~~~~~faf~G~e~v~~ 221 (461)
T PRK10746 145 LYGEIEFWFAMIKVTTIIVMIVIGLGVIFFGFGNGGQSIGFSNL-T--EHGGFFAGGWKGFLTALCIVVASYQGVELIGI 221 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCccccc-c--CCCCcCcccHHHHHHHHHHHHHHhcCHHHHHH
Confidence 999999999999998887777665432 11 111111223444 2 2222 234456788999999999999999999
Q ss_pred hhhhccCcccccchHHHHHHHHHHHHHHHHHHHHHHhccChhhhhcCCCcccCCCcHHHHHHHHhhcccCCcchhHHHHH
Q 010352 250 LTEETKGADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNETAGAFVPAQILYDAFHGRYHNSTGAIILLI 329 (512)
Q Consensus 250 ~~~E~k~P~k~ip~ai~~~~~~~~i~y~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 329 (512)
.+||+|||+||+|||+..+...+.++|++..+...... |++++..+ +.|. ...+... |.+....++.+
T Consensus 222 ~a~E~knP~k~iP~Ai~~~~~~i~~~yv~~~~~~~~~~-p~~~~~~~------~sp~----v~~~~~~-g~~~~~~i~~~ 289 (461)
T PRK10746 222 TAGEAKNPQVTLRSAVGKVLWRILIFYVGAIFVIVTIF-PWNEIGSN------GSPF----VLTFAKI-GITAAAGIINF 289 (461)
T ss_pred HHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHeeee-CCCCCCCC------CCcH----HHHHHHh-CchhHHHHHHH
Confidence 99999999999999999999999999999998888888 77766443 2344 3333333 66656778888
Q ss_pred HHHHHHHHhHHHHHhhhhhhHHhhhcCCCCCcccccccccccCCchHHHHHHHHHHHHHHh---ccccccHHHHHHHHHH
Q 010352 330 VIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQLHPKHKVPSNAVWLCAAICIILG---LPILKVNVVFTAITSI 406 (512)
Q Consensus 330 ~~~~~~~~~~~~~~~~~sR~l~~ma~d~~lP~~~~f~~~~~~~~~P~~a~~~~~~i~~~~~---~~~~~~~~~~~~l~~~ 406 (512)
..+.+.+++.|+.+++.||++++|||||.+| ++|+|+| |+|+|+++++++.+...+.. +........++.+.++
T Consensus 290 ~il~a~~s~~n~~~~~~sR~l~~~a~~g~lP--~~~~~~~-~~g~P~~al~~~~~~~~l~~~~~~~~~~~~~~f~~l~~~ 366 (461)
T PRK10746 290 VVLTAALSGCNSGMYSCGRMLYALAKNRQLP--AAMAKVS-RHGVPVAGVAVSILILLVGSCLNYIIPNPQRVFVYVYSA 366 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCcC--HHHHHhC-CCCCcHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 8999999999999999999999999999999 9999999 89999999998865543321 1222345678999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcccCc---cCCCcccCCchhhHHHHHHHHHHHHHHHhcCC
Q 010352 407 CTIGWVGGYAVPIFARMVMAEQKF---NAGPFYLGKASRPICLIAFLWICYTCSVFLLP 462 (512)
Q Consensus 407 ~~~~~~~~~~l~~~~~~~~r~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 462 (512)
++....+.|..++++.+++||+.+ +++|||.| ++|...++++++....++...+.
T Consensus 367 ~~~~~~i~w~~i~~~~i~~r~~~~~~~~~~~~~~~-~~p~~~~~~~~~~~~~~~~~~~~ 424 (461)
T PRK10746 367 SVLPGMVPWFVILISQLRFRRAHKAAIASHPFRSI-LFPWANYLTMAFLICVLIGMYFN 424 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccccCCCCcCC-CccHHHHHHHHHHHHHHHHHHHC
Confidence 999999999999999999886543 46789988 99999999888888877666443
No 14
>TIGR01773 GABAperm gamma-aminobutyrate permease. GabP is highly homologous to amino acid permeases from B. subtilis, E. coli, as well as to other members of the amino acid permease family (pfam00324). A member of the APC (amine-polyamine-choline) transporter superfamily, GABA permease possesses a "consensus amphiphatic region" (CAR) found to be evolutionarily conserved within this transport family. This amphiphatic region is located between helix 8 and cytoplasmic loop 8-9, forming a potential channel domain and suggested to play a significant role in ligand recognition and translocation. Unique to GABA permeases, a conserved cysteine residue (CYS-300, E.coli) located at the beginning of the amphiphatic domain, has been determined to be critical for catalytic specificity.
Probab=100.00 E-value=1.9e-51 Score=424.32 Aligned_cols=438 Identities=18% Similarity=0.202 Sum_probs=343.5
Q ss_pred CcccccccchHHHHHHHHHHhhhhhhHHHHHHhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChhhHHHhh
Q 010352 14 KQELRREMTLFKTFAISFSTMTLFTGIIPLYGSSLLYAGPASLVWGWVVVSFFTWFVGLAMAEICSSFPTTGSLYFWAAH 93 (512)
Q Consensus 14 ~~~l~r~l~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~G~~~~~~~~ii~~l~~~~~a~~~~el~~~~p~~GG~y~~~~~ 93 (512)
+.++||+|+.+++.+++++.++| +|++..++...+.+||. .+++|++++++.++.+++++|+++++|++||.|.|+++
T Consensus 7 ~~~~~~~L~~~~~~~i~ig~~IG-sGif~~~g~~~~~~G~~-~~i~~~i~~v~~~~~a~~~aEl~s~~P~~Gg~~~~~~~ 84 (452)
T TIGR01773 7 GLKLPNGLKTRHVTMLSIAGVIG-AGLFVGSGSAIASAGPA-ALLAYLLAGLLVVFIMRMLGEMAVANPDTGSFSTYADD 84 (452)
T ss_pred hHhHhCcCcHHHHHHHHHhhhhh-chHHHhhHHHHHhcCCH-HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHH
Confidence 45689999999999999999999 99999999999999998 88899999999999999999999999999999999999
Q ss_pred ccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccCchHHHHHHHHHHHHHHHHHHhchhh
Q 010352 94 LASPKWGPFASWCCAWLETIGLIAGMGTQAYAGSQTLQSIILLCTGTNKDGGYFAPKWLFLCMYIGLTIIWAVLNTFALE 173 (512)
Q Consensus 94 ~~g~~~g~~~g~~~g~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~k 173 (512)
. +||..||++||.+|+.+....+.++...+++++..++ + .+. ....++++++.+.+|++|+|
T Consensus 85 ~----~g~~~gf~~gw~~~~~~~~~~~~~~~~~~~~l~~~~~---------~--~~~---~~~~~~~~~~~~~~n~~gv~ 146 (452)
T TIGR01773 85 A----IGRWAGFTIGWLYWWFWVLVIPLEAIAAAGILQYWFP---------D--IPL---WLFSLILTIVLTLTNLYSVK 146 (452)
T ss_pred H----hCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---------c--CcH---HHHHHHHHHHHHHHHHHhcc
Confidence 9 7777899999999999999999998888888876531 1 122 34566777778999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhccc--cccccccccccccccCCCCC-CCchhHHHHhhhhhhhhhccccccchh
Q 010352 174 VIAFIDIISMWWQVAGGLVIIIMLPLVALT--TQSASYVFTHFEMSPEATGI-SSKPYAVILSFLVSQYSLYGYDSAAHL 250 (512)
Q Consensus 174 ~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~f~G~e~~~~~ 250 (512)
..++++.+.+.+|++.++.+++.++..... +......++++ . +.+++ +++..++..++...+|+|.|+|.++++
T Consensus 147 ~~~~~~~~~~~~ki~~l~~~ii~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~g~~~~~~a~~~~~~af~G~e~~~~~ 223 (452)
T TIGR01773 147 SYGEFEFWFALIKVIAIIAFIILGAVAIFGFAPGSEVSGFSNL-T--GKGGFFPNGIGAVLLAILVTMFSFMGTEIVTIA 223 (452)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCccccc-c--CCCCcCcccHHHHHHHHHHHHHHhccHHHHhHH
Confidence 999999999999999988877766532211 11111223333 2 22333 333456999999999999999999999
Q ss_pred hhhccCcccccchHHHHHHHHHHHHHHHHHHHHHHhccChhhhhcCCCcccCCCcHHHHHHHHhhcccCCcchhHHHHHH
Q 010352 251 TEETKGADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNETAGAFVPAQILYDAFHGRYHNSTGAIILLIV 330 (512)
Q Consensus 251 ~~E~k~P~k~ip~ai~~~~~~~~i~y~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 330 (512)
+||+|||+||+|||+..+...+.++|++......... |+++....+ ..|. ....+.. |.++...++.+.
T Consensus 224 a~E~k~P~r~iPrAi~~~~~~~~~~y~l~~~~~~~~~-p~~~~~~~~-----~~p~----~~~~~~~-g~~~~~~ii~~~ 292 (452)
T TIGR01773 224 AAESSNPIKSITRATNSVIWRIIVFYLGSIFIVVALL-PWNSPNLLE-----VGSY----VAVLELL-GIPHAKLIMDFV 292 (452)
T ss_pred HHhhcChhhHHHHHHHHHHHHHHHHHHHHHHHHeeEe-CCCCccccc-----CCcH----HHHHHHc-CChhHHHHHHHH
Confidence 9999999999999999999999999999888777666 433321111 1132 2222222 666677888888
Q ss_pred HHHHHHHhHHHHHhhhhhhHHhhhcCCCCCcccccccccccCCchHHHHHHHHHHHHHHhccc-cccHHHHHHHHHHHHH
Q 010352 331 IWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQLHPKHKVPSNAVWLCAAICIILGLPI-LKVNVVFTAITSICTI 409 (512)
Q Consensus 331 ~~~~~~~~~~~~~~~~sR~l~~ma~d~~lP~~~~f~~~~~~~~~P~~a~~~~~~i~~~~~~~~-~~~~~~~~~l~~~~~~ 409 (512)
.+++.+++.++.+.+.+|++++|||||.+| ++|+|+| |+++|++|++++.+++.+..+.. ..+++.++.+.+..+.
T Consensus 293 ~~~~~~~~~~~~~~~~sR~~~a~ardg~lP--~~~~~v~-~~~~P~~Ail~~~~~~~~~~l~~~~~~~~~f~~l~~~~~~ 369 (452)
T TIGR01773 293 VLTAVLSCLNSALYTTSRMLYSLAERGDAP--RVFMKLN-KKGVPVQAVLASTFFSFLTVVVNYFAPDKVFLFLVNSSGA 369 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCcC--HHHHhhC-CCCCcHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 899999999999999999999999999999 9999999 88999999999999988765543 2346678899999998
Q ss_pred HHHHHHHHHHHHHHhhccc-CccCCCcccCC-chhhHHHHHHHHHHHHHHHhc-CCCCCCCCCCCccchhHHHHHHHHHH
Q 010352 410 GWVGGYAVPIFARMVMAEQ-KFNAGPFYLGK-ASRPICLIAFLWICYTCSVFL-LPTFYPISWDTFNYAPVALGVGLGLI 486 (512)
Q Consensus 410 ~~~~~~~l~~~~~~~~r~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~ 486 (512)
..++.|.+.+++.+++|+| ++.+|||+.++ .++..+++++.+..+..+... .|+. .+..+....+.+.+
T Consensus 370 ~~~~~y~~~~~~~i~~r~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~p~~--------~~~~~~~~~~~~~~ 441 (452)
T TIGR01773 370 IALLVYLVIAVSQLRMRKKLKANGEAIKIRMWLYPWLTWLVIIFICGILVSMLFIPSM--------RDEVLLTGLLTIIV 441 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCccCCCccHHHHHHHHHHHHHHHHHHHcccc--------cHHHHHHHHHHHHH
Confidence 9999999999898888765 34346655542 589999998888888877774 4421 13334444455555
Q ss_pred hhhheeecce
Q 010352 487 MLWWLLDARK 496 (512)
Q Consensus 487 ~~~~~~~~~~ 496 (512)
..+|+.++||
T Consensus 442 ~~~y~~~~~~ 451 (452)
T TIGR01773 442 LCSYLVFARR 451 (452)
T ss_pred HHHHHHhhcc
Confidence 5556554444
No 15
>TIGR00913 2A0310 amino acid permease (yeast).
Probab=100.00 E-value=1.7e-51 Score=428.02 Aligned_cols=422 Identities=16% Similarity=0.187 Sum_probs=334.6
Q ss_pred ccccchHHHHHHHHHHhhhhhhHHHHHHhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCC-CChhhHHHhhccC
Q 010352 18 RREMTLFKTFAISFSTMTLFTGIIPLYGSSLLYAGPASLVWGWVVVSFFTWFVGLAMAEICSSFPT-TGSLYFWAAHLAS 96 (512)
Q Consensus 18 ~r~l~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~G~~~~~~~~ii~~l~~~~~a~~~~el~~~~p~-~GG~y~~~~~~~g 96 (512)
||+++.+++.+++++.++| +|++..++...+.+||.+.+++|+++++++++.+++++|+++++|+ .||.|.|+++.
T Consensus 1 ~r~L~~~~~~~l~vg~~IG-sGif~~~~~~~~~~Gp~~~i~~~~i~~~~~~~~a~~~aEl~s~~P~~gG~~~~~~~~~-- 77 (478)
T TIGR00913 1 KKSLKQRHIQMIALGGTIG-TGLLVGSGTALATGGPAGLLIGYAIMGSIIYCVMQSLGEMATFYPVVSGSFATYASRF-- 77 (478)
T ss_pred CCCCcHHHHHHHHHhcccc-chhhhcchhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHH--
Confidence 5899999999999999999 9999999999999999767999999999999999999999999995 55777899999
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccCchHHHHHHHHHHHHHHHHHHhchhhHHH
Q 010352 97 PKWGPFASWCCAWLETIGLIAGMGTQAYAGSQTLQSIILLCTGTNKDGGYFAPKWLFLCMYIGLTIIWAVLNTFALEVIA 176 (512)
Q Consensus 97 ~~~g~~~g~~~g~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~k~~~ 176 (512)
+||..||++||.+|+.++...+......+.++.... .+. +.+.+. .+++++.+.+|++|+|..+
T Consensus 78 --~g~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~--~~~~~~---~~~~~~~~~in~~gv~~~~ 141 (478)
T TIGR00913 78 --VDPAFGFAVGWNYWLQWLIVLPLELVTASMTIQYWT---------DKV--NPAVWI---AIFYVFIVIINLFGVKGYG 141 (478)
T ss_pred --cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC---------CCC--CHHHHH---HHHHHHHHHHHHhcchHHH
Confidence 777789999999999999999999888888776432 111 222222 2445677899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhccc--cccccccccccccccCCCCCCCc-----hhHHHHhhhhhhhhhccccccch
Q 010352 177 FIDIISMWWQVAGGLVIIIMLPLVALT--TQSASYVFTHFEMSPEATGISSK-----PYAVILSFLVSQYSLYGYDSAAH 249 (512)
Q Consensus 177 ~~~~~~~~~~i~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~f~G~e~~~~ 249 (512)
++|.+++.+|+..++.+++.++..... ++.....+.++ . +.++++++ +.++..++...+|+|.|+|.+++
T Consensus 142 ~~~~~~~~~ki~~l~~~ii~~i~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~ 218 (478)
T TIGR00913 142 EAEFWFSSIKILAIIGFIILSIILNCGGGPNHGYIGFRYW-H--DPGAFAGGTIGGRFKGVCSVFVTAAFSFGGTELVAL 218 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCccccc-C--CCCCCCCCCccchHHHHHHHHHHHHhhhccHHHHHH
Confidence 999999999988887777665543211 11111122222 1 22233322 56788999999999999999999
Q ss_pred hhhhccCcccccchHHHHHHHHHHHHHHHHHHHHHHhccChh--hhhcCCCc-ccCCCcHHHHHHHHhhcccCCcchhHH
Q 010352 250 LTEETKGADKTGPIAILSSIGIISIFGWALILALCFSIQDFS--YLYDKSNE-TAGAFVPAQILYDAFHGRYHNSTGAII 326 (512)
Q Consensus 250 ~~~E~k~P~k~ip~ai~~~~~~~~i~y~~~~~~~~~~~~~~~--~l~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~ 326 (512)
++||+|||+||+|||+..++.++.++|++..++..... +++ ++.++... +..+.|. ....... |.++...+
T Consensus 219 ~a~E~knP~r~iPrai~~~~~~~~~~Y~l~~~~~~~~~-p~~~~~l~~~~~~~~~~~~p~----~~~~~~~-g~~~~~~~ 292 (478)
T TIGR00913 219 TAGEAANPRKSIPRAAKRTFWRILVFYILTLFLIGFLV-PYNDPRLLSSSSSSDSAASPF----VIAIQNH-GIKVLPHI 292 (478)
T ss_pred HHHhhcChhhHHHHHHHHHHHHHHHHHHHHHHHheeec-cCCChhhcccccCCCcCCCcH----HHHHHHc-CCchHhHH
Confidence 99999999999999999999999999999988877777 433 33332210 0002333 2223322 66667888
Q ss_pred HHHHHHHHHHHhHHHHHhhhhhhHHhhhcCCCCCcccccccccccCCchHHHHHHHHHHHHHHhcc-ccccHHHHHHHHH
Q 010352 327 LLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQLHPKHKVPSNAVWLCAAICIILGLP-ILKVNVVFTAITS 405 (512)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~sR~l~~ma~d~~lP~~~~f~~~~~~~~~P~~a~~~~~~i~~~~~~~-~~~~~~~~~~l~~ 405 (512)
+.+..+++.+++.++.+.+.+|++++|||||.+| ++|+|+| |+++|++|++++.+++.+..+. ...+.+.++.+.+
T Consensus 293 ~~~~~~~s~~~~~~~~~~~~sR~l~a~ardg~lP--~~f~k~~-~~~~P~~Ai~~~~~~~~l~~l~~~~~~~~~~~~l~~ 369 (478)
T TIGR00913 293 FNAVILISVLSAANSSLYASSRTLYALAHQGLAP--KIFAYVD-RRGVPYVAVIVSSLFGLLAFLAVSKKEAEVFTWLLN 369 (478)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHhCCccc--HHHHhhC-CCCCCHHHHHHHHHHHHHHHHHHccChHHHHHHHHH
Confidence 8899999999999999999999999999999999 9999999 8899999999999987654332 2234678999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhccc------CccCCCcccCCchhhHHHHHHHHHHHHHHHhcCCCCCCCCCCC
Q 010352 406 ICTIGWVGGYAVPIFARMVMAEQ------KFNAGPFYLGKASRPICLIAFLWICYTCSVFLLPTFYPISWDT 471 (512)
Q Consensus 406 ~~~~~~~~~~~l~~~~~~~~r~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 471 (512)
+++....+.|.+.+++.+++||| ++++||||.| +++..++++++.+.+..+...++...|.+.+.
T Consensus 370 ~~~~~~~i~y~~~~~~~i~~r~~~~~~~~~~~~~p~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 440 (478)
T TIGR00913 370 ISGLSGFFTWMCICLSHIRFRKAMKAQGRSLDELPYKSQ-TGPYGSYYALFFNILILIAQGYVAFAPVKFSA 440 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccCCccCC-CcchHHHHHHHHHHHHHHHHHHHHHccCCCCH
Confidence 99999999999999999888753 2346899998 99999999999999998888887776654444
No 16
>PRK10655 potE putrescine transporter; Provisional
Probab=100.00 E-value=6e-51 Score=419.21 Aligned_cols=396 Identities=14% Similarity=0.138 Sum_probs=318.6
Q ss_pred ccccccchHHHHHHHHHHhhhhhhHHHHHHhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChhhHHHhhcc
Q 010352 16 ELRREMTLFKTFAISFSTMTLFTGIIPLYGSSLLYAGPASLVWGWVVVSFFTWFVGLAMAEICSSFPTTGSLYFWAAHLA 95 (512)
Q Consensus 16 ~l~r~l~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~G~~~~~~~~ii~~l~~~~~a~~~~el~~~~p~~GG~y~~~~~~~ 95 (512)
++||++++++.++++++.++| +|++..++.. ..+|+. .+++|++++++.++.+++|+|+++++|++||.|.|+++.
T Consensus 3 ~~~~~l~~~~~~~l~vg~~iG-sGif~~p~~~-~~~G~~-~~~~w~i~~~~~~~~a~~~aeL~~~~P~~GG~y~y~~~~- 78 (438)
T PRK10655 3 AKSNKMGVVQLTILTAVNMMG-SGIIMLPTKL-AQVGTI-SILSWLVTAVGSMALAYAFAKCGMFSRKSGGMGGYAEYA- 78 (438)
T ss_pred CccCcccHHHHHHHHHHhhhh-hHHHHhHHHH-HHhhHH-HHHHHHHHHHHHHHHHHHHHHHhhhCCCCCchHHHHHHH-
Confidence 457899999999999999999 9999987654 457887 889999999999999999999999999999999999999
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccCchHHHHHHHHHHHHHHHHHHhchhhHH
Q 010352 96 SPKWGPFASWCCAWLETIGLIAGMGTQAYAGSQTLQSIILLCTGTNKDGGYFAPKWLFLCMYIGLTIIWAVLNTFALEVI 175 (512)
Q Consensus 96 g~~~g~~~g~~~g~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~k~~ 175 (512)
+||..||+++|.+|+.+.......+....+|+..+++ ...+++...++.++++++.+.+|++|+|..
T Consensus 79 ---~G~~~gf~~gw~~~~~~~~~~~~~a~~~~~y~~~~~~----------~~~~~~~~~~~~~~~l~~~~~ln~~g~~~~ 145 (438)
T PRK10655 79 ---FGKSGNFMANYTYGVSLLIANVAIAISAVGYGTELFG----------ATLSPVQICLATIGVLWLCTVANFGGARIT 145 (438)
T ss_pred ---cCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc----------cccchHHHHHHHHHHHHHHHHHHHhCHHHH
Confidence 6666799999999999887776666677777776552 223455666677778888999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhccccccccccccccccccCCCCCCCchhHHHHhhhhhhhhhccccccchhhhhcc
Q 010352 176 AFIDIISMWWQVAGGLVIIIMLPLVALTTQSASYVFTHFEMSPEATGISSKPYAVILSFLVSQYSLYGYDSAAHLTEETK 255 (512)
Q Consensus 176 ~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~~~E~k 255 (512)
+++|++.+..+++.++++.+.++.....+ ++ .+.+ ++.+.+. ..++..++....|+|.|+|.+++++||+|
T Consensus 146 ~~i~~i~~~~~l~~l~~~~i~~~~~~~~~---~~-~~~~----~~~~~~~-~~~~~~~~~~~~~af~G~e~~~~~a~E~k 216 (438)
T PRK10655 146 GQISSVTVWGVIIPVVGLSIIGWFWFSPS---LY-VAAW----NPHHLPF-FSAVGSSIAMTLWAFLGLESACANSDAVE 216 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCcc---cc-cCCc----CccCCch-HHHHHHHHHHHHHHHhhhhhhhhhHHHhh
Confidence 99999999999888877777665442211 11 1112 2222221 35678888899999999999999999999
Q ss_pred CcccccchHHHHHHHHHHHHHHHHHHHHHHhccChhhhhcCCCcccCCCcHHHHHHHHhhcccCCcchhHHHHHHHHHHH
Q 010352 256 GADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNETAGAFVPAQILYDAFHGRYHNSTGAIILLIVIWGSF 335 (512)
Q Consensus 256 ~P~k~ip~ai~~~~~~~~i~y~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 335 (512)
||+||+||++..+..++.++|++...+..... +.+++.+++ .|..+.+.+.+ |+. ...++.+..+++.
T Consensus 217 ~P~r~iPrAi~~~~~~~~~~Y~l~~~~~~~~~-~~~~l~~~~------~p~~~~~~~~~----g~~-~~~~~~~~~~is~ 284 (438)
T PRK10655 217 NPERNVPIAVLGGTLGAAVIYIVSTNVIAGIV-PNMELANST------APFGLAFAQMF----NPT-VGKIVMALMVMSC 284 (438)
T ss_pred CccccccHHHHHHHHHHHHHHHHHHHHHHhCC-CHHHHhhcc------chHHHHHHHHc----Chh-HHHHHHHHHHHHH
Confidence 99999999999999999999999998888877 777765442 34444444443 333 5667777888899
Q ss_pred HHhHHHHHhhhhhhHHhhhcCCCCCcccccccccccCCchHHHHHHHHHHHHHHhcccccc--HHHHHHHHHHHHHHHHH
Q 010352 336 FFGGLSVTTSAARVVYALSRDKGIPFSSIWRQLHPKHKVPSNAVWLCAAICIILGLPILKV--NVVFTAITSICTIGWVG 413 (512)
Q Consensus 336 ~~~~~~~~~~~sR~l~~ma~d~~lP~~~~f~~~~~~~~~P~~a~~~~~~i~~~~~~~~~~~--~~~~~~l~~~~~~~~~~ 413 (512)
+++.+++..+.+|++++|+|||.+| ++|+|+| |+++|+++++++.+++.++.+....+ .+.++.+.++.+....+
T Consensus 285 ~~~~~~~~~~~sR~~~~~a~dg~lP--~~~~~v~-~~~tP~~all~~~~i~~~l~l~~~~~~~~~~~~~l~~~~~~~~~i 361 (438)
T PRK10655 285 CGSLLGWQFTIAQVFKSSADEGYFP--KIFSRVT-KVDAPVQGMLIIVVIQSLLSLMTISPSLNSQFNVLVNLAVVTNII 361 (438)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCchh--HHHHhhC-cCCCCHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999 9999999 78999999999999887765533222 46799999999999999
Q ss_pred HHHHHHHHHHhhccc-CccCCCcccCCchhhHHHHHHHHHHHH
Q 010352 414 GYAVPIFARMVMAEQ-KFNAGPFYLGKASRPICLIAFLWICYT 455 (512)
Q Consensus 414 ~~~l~~~~~~~~r~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 455 (512)
.|.+.+++.+++||| ++.+||||.+ +.++.++.+++.+.
T Consensus 362 ~y~~~~~~~~~lr~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 401 (438)
T PRK10655 362 PYILSMAALVIIQKVANVPPSKAKVA---NFIAFVGALYSFYA 401 (438)
T ss_pred HHHHHHHHHHHHHhhCCCCcchhHHH---HHHHHHHHHHHHHH
Confidence 999999999877755 4456777765 56666666666543
No 17
>TIGR00908 2A0305 ethanolamine permease. The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily.
Probab=100.00 E-value=8.6e-51 Score=418.52 Aligned_cols=431 Identities=14% Similarity=0.137 Sum_probs=333.0
Q ss_pred CcccccccchHHHHHHHHHHhhhhhhHHHHHHhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChhhHHHhh
Q 010352 14 KQELRREMTLFKTFAISFSTMTLFTGIIPLYGSSLLYAGPASLVWGWVVVSFFTWFVGLAMAEICSSFPTTGSLYFWAAH 93 (512)
Q Consensus 14 ~~~l~r~l~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~G~~~~~~~~ii~~l~~~~~a~~~~el~~~~p~~GG~y~~~~~ 93 (512)
++++||++++++.++++++.+++ |.+...+..++.+||.+.+++|++++++.++.+++++|+++++|++||.|.|+++
T Consensus 2 ~~~l~r~l~~~~~~~l~~~~~ig--g~~~~~~~~~~~~G~~~~~~~~~i~~~~~~~~a~~~aEl~s~~P~~Gg~y~~~~~ 79 (442)
T TIGR00908 2 HRQLKKTLATWQLWGIGVGYVIS--GDYAGWNFGLAQGGWGGFVVATLLVATMYLTFCFSLAELSTMIPTAGGGYGFARR 79 (442)
T ss_pred CchhhccCCHHHHHHhHHHHHhh--ccchhHhhHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 56799999999999999999875 6666666777888998788999999999999999999999999999999999999
Q ss_pred ccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccCchHHHHHHHHHHHHHHHHHHhchhh
Q 010352 94 LASPKWGPFASWCCAWLETIGLIAGMGTQAYAGSQTLQSIILLCTGTNKDGGYFAPKWLFLCMYIGLTIIWAVLNTFALE 173 (512)
Q Consensus 94 ~~g~~~g~~~g~~~g~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~k 173 (512)
. +||..||++||.+++.+....+.++...++++...++. .+. ....++++++++.+|++|+|
T Consensus 80 ~----~G~~~gf~~gw~~~~~~~~~~~~~a~~~~~~l~~~~p~-----------~~~---~~~~~~~~~~~~~ln~~g~~ 141 (442)
T TIGR00908 80 A----FGPWGGFLAGTAILIEFAFAPPAIACFIGAYCESLFPV-----------GPG---WLAALVFYIVFIGINILGVG 141 (442)
T ss_pred H----hCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-----------Cch---hHHHHHHHHHHHHHHHHHHH
Confidence 9 77778999999999999999999999999998876521 122 23455667778999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccccccccccccCCCCCCC-chhHHHHhhhhhhhhhccccccchhhh
Q 010352 174 VIAFIDIISMWWQVAGGLVIIIMLPLVALTTQSASYVFTHFEMSPEATGISS-KPYAVILSFLVSQYSLYGYDSAAHLTE 252 (512)
Q Consensus 174 ~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~f~G~e~~~~~~~ 252 (512)
..++++.+.+.++++.++++...... +.++.++..++. . +.+++.+ +..+++.++..++|+|.|+|.+++++|
T Consensus 142 ~~~~i~~~~~~~~~~~l~i~~~~~~~---~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~ae 215 (442)
T TIGR00908 142 EAAKLEFVVTAVAIIALGVFIGAMVP---HFDSANLFNGPQ-T--GASSFLPGAYVGVFAAIPFAIWFFLAVEGVAMAAE 215 (442)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHhc---cCCHHHhccCCc-c--CCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998888766555433221 112222211111 1 2223332 234688889999999999999999999
Q ss_pred hccCcccccchHHHHHHHHHHHHHHHHHHHHHHhccChhhhhcCCCcccCCCcHHHHHHHHhhcccCCcchhHHHHHHHH
Q 010352 253 ETKGADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNETAGAFVPAQILYDAFHGRYHNSTGAIILLIVIW 332 (512)
Q Consensus 253 E~k~P~k~ip~ai~~~~~~~~i~y~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 332 (512)
|+|||+||+||++..++.++.++|+.......... +++++.+++ .|..+.+.+.++ +..+...++.+..+
T Consensus 216 E~k~P~r~iprai~~s~~~~~~~~~~~~~~~~g~~-~~~~l~~~~------~p~~~~~~~~~g---~~~~~~~~i~~~~~ 285 (442)
T TIGR00908 216 ETKNPKRDIPRGLIGAILTLLALAAGILVVGPGAA-DAKELMGSN------NPLPEALESIYG---GSTWMSQFVNLVGL 285 (442)
T ss_pred HhcCcccccCHHHHHHHHHHHHHHHHHHHHHhcCC-CHHHhCCCc------chHHHHHHHHhC---CchHHHHHHHHHHH
Confidence 99999999999999999999999998877666555 777775543 355455544443 12335556677777
Q ss_pred HHHHHhHHHHHhhhhhhHHhhhcCCCCCcccccccccccCCchHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHH
Q 010352 333 GSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQLHPKHKVPSNAVWLCAAICIILGLPILKVNVVFTAITSICTIGWV 412 (512)
Q Consensus 333 ~~~~~~~~~~~~~~sR~l~~ma~d~~lP~~~~f~~~~~~~~~P~~a~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~ 412 (512)
++.+++.++.+.+.+|++++|||||.+| ++|+|+| |+|+|++|++++.+++.++.+. + +.+.+.++.++...
T Consensus 286 ~~~~~s~~~~~~~~sR~l~a~ardg~lP--~~~~~~~-~~~~P~~Ail~~~~i~~~~~l~--~---~~~~l~~~~~~~~~ 357 (442)
T TIGR00908 286 FGLIASFHGIIYGYSRQIFALSRAGYLP--ESLSKVN-RKKAPVLAIVVPGVIGFGLSLT--G---QTALIILVSVFGAI 357 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCcc--HHHHHhC-CCCCcHHHHHHHHHHHHHHHHh--c---cHHHHHHHHHHHHH
Confidence 8889999999999999999999999999 9999999 9999999999999998876652 1 34567788889999
Q ss_pred HHHHHHHHHHHhhccc-CccCCCcccCCchhhHHHHHHHHHHHHHHHhcCCCCCCCCCCCccchhHHHHHHHHHHhhhhe
Q 010352 413 GGYAVPIFARMVMAEQ-KFNAGPFYLGKASRPICLIAFLWICYTCSVFLLPTFYPISWDTFNYAPVALGVGLGLIMLWWL 491 (512)
Q Consensus 413 ~~~~l~~~~~~~~r~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 491 (512)
+.|.+.+.+.+++|+| ++.+||||.| .++..++++++.+.+.++...... . ..+....+..++..++|+
T Consensus 358 ~~y~~~~~a~i~lr~~~p~~~rp~~~p-~~~~~~~l~~~~~~~~l~~~~~~~-----~----~~~~~~~~~~~~~~~~~~ 427 (442)
T TIGR00908 358 ISYVLSMAAHFTLRIRRPDMERPYRTP-GGILTPGVALVLACVALVTGFYVD-----P----RVVVGAVAIFVVLIGYYF 427 (442)
T ss_pred HHHHHHHHHHHHHHhcCCCCCCCccCC-CcchHHHHHHHHHHHHHHHHHHcC-----h----HHHHHHHHHHHHHHHHHH
Confidence 9999999999877754 4668999999 888888888888777766554331 0 022334455555556665
Q ss_pred eecceee
Q 010352 492 LDARKWF 498 (512)
Q Consensus 492 ~~~~~~~ 498 (512)
+++|++.
T Consensus 428 l~~~~~~ 434 (442)
T TIGR00908 428 LYSRHHL 434 (442)
T ss_pred hhhhchh
Confidence 6554443
No 18
>PRK10644 arginine:agmatin antiporter; Provisional
Probab=100.00 E-value=1.8e-50 Score=416.03 Aligned_cols=429 Identities=15% Similarity=0.149 Sum_probs=334.8
Q ss_pred cccccccchHHHHHHHHHHhhhhhhHHHHHHhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChhhHHHhhc
Q 010352 15 QELRREMTLFKTFAISFSTMTLFTGIIPLYGSSLLYAGPASLVWGWVVVSFFTWFVGLAMAEICSSFPTTGSLYFWAAHL 94 (512)
Q Consensus 15 ~~l~r~l~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~G~~~~~~~~ii~~l~~~~~a~~~~el~~~~p~~GG~y~~~~~~ 94 (512)
.+++|++|++++++++++.++| +|++..++.... .|+. .+++|+++++.+++.+++++|+++++|++||.|.|+++.
T Consensus 4 ~~~~~~lg~~~~~~l~vg~~iG-sGif~~~~~~a~-~g~~-~~~~~~i~~~~~l~~al~~aEL~s~~P~aGG~y~~~~~~ 80 (445)
T PRK10644 4 DADAHKVGLIPVTLMVAGNIMG-SGVFLLPANLAS-TGGI-AIYGWLVTIIGALGLSMVYAKMSSLDPSPGGSYAYARRC 80 (445)
T ss_pred CccCCCcCHHHHHHHHHhhHhh-hHHHhhHHHHHH-HHHH-HHHHHHHHHHHHHHHHHHHHHHHhhCCCCCChhHHHHHH
Confidence 4578999999999999999999 999999887555 4555 889999999999999999999999999999999999999
Q ss_pred cCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccCchHHHHHHHHHHHHHHHHHHhchhhH
Q 010352 95 ASPKWGPFASWCCAWLETIGLIAGMGTQAYAGSQTLQSIILLCTGTNKDGGYFAPKWLFLCMYIGLTIIWAVLNTFALEV 174 (512)
Q Consensus 95 ~g~~~g~~~g~~~g~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~k~ 174 (512)
+||..||+++|.+|+.+.............+....++. ..+++...++.++++++++.+|.+|+|.
T Consensus 81 ----~g~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~ln~~gvk~ 146 (445)
T PRK10644 81 ----FGPFLGYQTNVLYWLACWIGNIAMVVIGVGYLSYFFPI----------LKDPLVLTITCVVVLWIFVLLNIVGPKM 146 (445)
T ss_pred ----cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc----------cCCcHHHHHHHHHHHHHHHHHHHhchHH
Confidence 77778999999999988777666666666676655421 2234555666777888899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhccccccccccccccccccCCCCCCCchhHHHHhhhhhhhhhccccccchhhhhc
Q 010352 175 IAFIDIISMWWQVAGGLVIIIMLPLVALTTQSASYVFTHFEMSPEATGISSKPYAVILSFLVSQYSLYGYDSAAHLTEET 254 (512)
Q Consensus 175 ~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~~~E~ 254 (512)
.+++|++++.++++.++++.+.++.....+ ++ .+.+ +..+++ .+.++..++...+|+|.|+|.+++++||+
T Consensus 147 ~~~i~~i~~~~~~i~l~~~~~~~~~~~~~~---~~-~~~~----~~~~~~-~~~~~~~~~~~~~~af~G~e~~~~~aeE~ 217 (445)
T PRK10644 147 ITRVQAVATVLALIPIVGIAVFGWFWFRGE---TY-MAAW----NVSGLG-TFGAIQSTLNVTLWSFIGVESASVAAGVV 217 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCch---hc-cCCc----cccccc-hHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Confidence 999999999999988887777665542211 11 0111 212222 24567788889999999999999999999
Q ss_pred cCcccccchHHHHHHHHHHHHHHHHHHHHHHhccChhhhhcCCCcccCCCcHHHHHHHHhhcccCCcchhHHHHHHHHHH
Q 010352 255 KGADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNETAGAFVPAQILYDAFHGRYHNSTGAIILLIVIWGS 334 (512)
Q Consensus 255 k~P~k~ip~ai~~~~~~~~i~y~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 334 (512)
|||+|++||++..++.++.++|++..++..... +.+++..++ .|..+.+.+.+ |+. ...++.+..+++
T Consensus 218 k~P~r~iPrai~~s~~i~~v~Y~l~~~~~~~~~-~~~~l~~~~------~p~~~~~~~~~----g~~-~~~~v~~~~~~s 285 (445)
T PRK10644 218 KNPKRNVPIATIGGVLIAAVCYVLSSTAIMGMI-PNAALRVSA------SPFGDAARMAL----GDT-AGAIVSFCAAAG 285 (445)
T ss_pred hCcccchhHHHHHHHHHHHHHHHHHHHHHHhCC-CHHHHhcCC------ChHHHHHHHHh----hhH-HHHHHHHHHHHH
Confidence 999999999999999999999999999999888 667665432 35444444443 433 566777778889
Q ss_pred HHHhHHHHHhhhhhhHHhhhcCCCCCcccccccccccCCchHHHHHHHHHHHHHHhcccccc--HHHHHHHHHHHHHHHH
Q 010352 335 FFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQLHPKHKVPSNAVWLCAAICIILGLPILKV--NVVFTAITSICTIGWV 412 (512)
Q Consensus 335 ~~~~~~~~~~~~sR~l~~ma~d~~lP~~~~f~~~~~~~~~P~~a~~~~~~i~~~~~~~~~~~--~~~~~~l~~~~~~~~~ 412 (512)
.+++.+++....+|++++|+|||.+| ++|+|+| |+++|+++++++.+++.++.+....+ .+.++.+.++++...+
T Consensus 286 ~~~~~~~~~~~~sr~~~a~ardg~lP--~~~~~v~-~~~tP~~Ai~~~~~i~~l~~l~~~~~~~~~~~~~l~~~~~~~~l 362 (445)
T PRK10644 286 CLGSLGGWTLLAGQTAKAAADDGLFP--PIFARVN-KAGTPVAGLLIVGVLMTIFQLSSISPNASKEFGLVSSVSVIFTL 362 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCcc--HHHHhhC-cCCCCHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999 9999999 68999999999999998866533222 3578999999999999
Q ss_pred HHHHHHHHHHHhhcccCccCCCcccCCchhhHHHHHHHHHHHHHHHhcCCCCCCCCCCCccchhHHHHHHHHHHhhhhee
Q 010352 413 GGYAVPIFARMVMAEQKFNAGPFYLGKASRPICLIAFLWICYTCSVFLLPTFYPISWDTFNYAPVALGVGLGLIMLWWLL 492 (512)
Q Consensus 413 ~~~~l~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 492 (512)
+.|.+++.+.+++|||+.+ ++.| +.+.+++++++.+++.++.. +.++++ ....+.++...+||+.
T Consensus 363 i~y~~~~~~~~~l~~~~~~---~~~p-~~~~~~~~~~~~~~~~~~~~--------~~~~~~---~~~~~~~~~~~~y~~~ 427 (445)
T PRK10644 363 VPYLYTCAALLLLGHGHFG---KARP-AYLAVTLIAFVYCIWAVVGS--------GAKEVM---WSFVTLMVITAFYALN 427 (445)
T ss_pred HHHHHHHHHHHHHhhcCCc---cccc-chhHHHHHHHHHHHHHHHHh--------hHHHHH---HHHHHHHHHHHHHHHH
Confidence 9999999999888766432 2234 66788888888888876532 222332 3333455666677666
Q ss_pred ecceeee
Q 010352 493 DARKWFT 499 (512)
Q Consensus 493 ~~~~~~~ 499 (512)
++||+++
T Consensus 428 ~~~~~~~ 434 (445)
T PRK10644 428 YNRLHKN 434 (445)
T ss_pred HHhhcCC
Confidence 6655544
No 19
>PRK11049 D-alanine/D-serine/glycine permease; Provisional
Probab=100.00 E-value=9e-51 Score=420.13 Aligned_cols=439 Identities=17% Similarity=0.213 Sum_probs=341.8
Q ss_pred CcccccccchHHHHHHHHHHhhhhhhHHHHHHhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChhhHHHhh
Q 010352 14 KQELRREMTLFKTFAISFSTMTLFTGIIPLYGSSLLYAGPASLVWGWVVVSFFTWFVGLAMAEICSSFPTTGSLYFWAAH 93 (512)
Q Consensus 14 ~~~l~r~l~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~G~~~~~~~~ii~~l~~~~~a~~~~el~~~~p~~GG~y~~~~~ 93 (512)
++++||+++.++...+++|.++| +|++..++.+.+.+||. .+++|++++++.++.+++++|+++..|..|+.|.|+++
T Consensus 15 ~~~l~r~l~~~~~~~i~vG~~IG-sGif~~~g~~~~~aGp~-~i~~~~i~~i~~~~~~~s~aEl~s~~~~~~~~~~ya~~ 92 (469)
T PRK11049 15 EQSLRRNLTNRHIQLIAIGGAIG-TGLFMGSGKTISLAGPS-IIFVYMIIGFMLFFVMRAMGELLLSNLEYKSFSDFASD 92 (469)
T ss_pred chhhhccCcHHHHHHHHHhhHHH-hHHHHHhhHHHhhcCcH-HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHH
Confidence 45699999999999999999999 99999999999999996 89999999999999999999999999999999999999
Q ss_pred ccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccCchHHHHHHHHHHHHHHHHHHhchhh
Q 010352 94 LASPKWGPFASWCCAWLETIGLIAGMGTQAYAGSQTLQSIILLCTGTNKDGGYFAPKWLFLCMYIGLTIIWAVLNTFALE 173 (512)
Q Consensus 94 ~~g~~~g~~~g~~~g~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~k 173 (512)
. +||..||++||.+++.+....+.++...+.++...+ ++. +.+ ..+++++++++.+|++|+|
T Consensus 93 ~----~g~~~gf~~gW~~~~~~~~~~~a~~~a~~~~~~~~~---------p~~--~~~---~~~~~~~~~~~~iN~~g~~ 154 (469)
T PRK11049 93 L----LGPWAGYFTGWTYWFCWVVTGIADVVAITAYAQFWF---------PDL--SDW---VASLAVVLLLLSLNLATVK 154 (469)
T ss_pred H----hCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---------CCC--cHH---HHHHHHHHHHHHHHHHhHH
Confidence 9 778889999999999998777777777777776543 111 222 2344566778999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhccc-c---ccccccccccccccCCCC-CCCchhHHHHhhhhhhhhhccccccc
Q 010352 174 VIAFIDIISMWWQVAGGLVIIIMLPLVALT-T---QSASYVFTHFEMSPEATG-ISSKPYAVILSFLVSQYSLYGYDSAA 248 (512)
Q Consensus 174 ~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~-~---~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~f~G~e~~~ 248 (512)
..+++|++.+.+|+..++.+++.++..... . +.....++++ . +.++ ++++..++..++...+|+|.|+|.++
T Consensus 155 ~~~~i~~~~~~~kl~~l~~~ii~g~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~p~g~~~~~~~~~~~~~af~G~e~~~ 231 (469)
T PRK11049 155 MFGEMEFWFAMIKIVAIVALIVVGLVMVAMHFQSPTGVEASFAHL-W--NDGGMFPKGLSGFFAGFQIAVFAFVGIELVG 231 (469)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCccccc-C--CCCCCCcccHHHHHHHHHHHHHHHhcHHHHH
Confidence 999999999999999999888877654211 1 1111123333 2 2222 23434568999999999999999999
Q ss_pred hhhhhccCcccccchHHHHHHHHHHHHHHHHHHHHHHhccChhhhhcCCCcccCCCcHHHHHHHHhhcccCCcchhHHHH
Q 010352 249 HLTEETKGADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNETAGAFVPAQILYDAFHGRYHNSTGAIILL 328 (512)
Q Consensus 249 ~~~~E~k~P~k~ip~ai~~~~~~~~i~y~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 328 (512)
+++||+|||+||+||++..+.+.+.++|++......... |++++.+++ .|..+. +... |.++...++.
T Consensus 232 ~~a~E~knP~r~iPrai~~~~~~~~~~y~l~~~~~~~~~-~~~~~~~~~------~p~~~~----~~~~-g~~~~~~~~~ 299 (469)
T PRK11049 232 TTAAETKDPEKSLPRAINSIPIRIIMFYVFALIVIMSVT-PWSSVVPDK------SPFVEL----FVLV-GLPAAASVIN 299 (469)
T ss_pred HHHHHhcCHhhHHHHHHHHHHHHHHHHHHHHHHHHeeec-CccccCccC------CcHHHH----HHHc-CChhHHHHHH
Confidence 999999999999999999888899999999998887776 777765432 243333 3322 5555778888
Q ss_pred HHHHHHHHHhHHHHHhhhhhhHHhhhcCCCCCcccccccccccCCchHHHHHHHHHHHHHHh-cccccc--HHHHHHHHH
Q 010352 329 IVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQLHPKHKVPSNAVWLCAAICIILG-LPILKV--NVVFTAITS 405 (512)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~sR~l~~ma~d~~lP~~~~f~~~~~~~~~P~~a~~~~~~i~~~~~-~~~~~~--~~~~~~l~~ 405 (512)
+..+.+.+++.++.+.+.+|++++|+|||.+| ++|+|+| |+++|+++++++.++..+.. +....+ .+.++.+.+
T Consensus 300 ~~~~~s~~~~~~~~~~~~sR~l~a~ardg~lP--~~~~kv~-~~~tP~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 376 (469)
T PRK11049 300 FVVLTSAASSANSGVFSTSRMLFGLAQEGVAP--KAFAKLS-KRAVPAKGLTFSCICLLGGVVLLYVNPSVIGAFTLVTT 376 (469)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC--HHHHhhC-CCCCCHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHH
Confidence 88999999999999999999999999999999 9999999 67999999999987665422 212222 257888999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccC-ccC--CCcccCCchhhHHHHHHHHHHHHHHHhcCCCCCCCCCCCccchhHHHHHH
Q 010352 406 ICTIGWVGGYAVPIFARMVMAEQK-FNA--GPFYLGKASRPICLIAFLWICYTCSVFLLPTFYPISWDTFNYAPVALGVG 482 (512)
Q Consensus 406 ~~~~~~~~~~~l~~~~~~~~r~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 482 (512)
..+....+.|.+++.+.+++|||+ +.+ ||||.| .++..++++++++.+.++...++.. +..........+
T Consensus 377 ~~~~~~~i~y~~~~~a~~~lr~~~p~~~~~~pf~~p-~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~ 449 (469)
T PRK11049 377 VSAILFMFVWTIILCSYLVYRKQRPHLHEKSIYKMP-LGKLMCWVCMAFFAFVLVLLTLEDD------TRQALIVTPLWF 449 (469)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccCc-CcchHHHHHHHHHHHHHHHHHHchh------HHHHHHHHHHHH
Confidence 999999999999999988887653 332 689998 8889999888888887776555531 222222333333
Q ss_pred HHHHhhhheeeccee
Q 010352 483 LGLIMLWWLLDARKW 497 (512)
Q Consensus 483 l~~~~~~~~~~~~~~ 497 (512)
+.+...+|+.+|||.
T Consensus 450 ~~~~~~~~~~~~~~~ 464 (469)
T PRK11049 450 IALGLGYLFIGKKRA 464 (469)
T ss_pred HHHHHHHHHHcccch
Confidence 445555665544433
No 20
>KOG1287 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=1.2e-51 Score=405.61 Aligned_cols=408 Identities=17% Similarity=0.231 Sum_probs=342.7
Q ss_pred CCCcccccccchHHHHHHHHHHhhhhhhHHHHHHhhhhcCCchh-HHHHHHHHHHHHHHHHHHHHHHHhhcCCCChhhHH
Q 010352 12 GYKQELRREMTLFKTFAISFSTMTLFTGIIPLYGSSLLYAGPAS-LVWGWVVVSFFTWFVGLAMAEICSSFPTTGSLYFW 90 (512)
Q Consensus 12 ~~~~~l~r~l~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~G~~~-~~~~~ii~~l~~~~~a~~~~el~~~~p~~GG~y~~ 90 (512)
+++.++|||+|+++++.+.+++++| +|+|..+.....++|+.+ ++..|+++++++++-++||+|+++.+|++||+|.|
T Consensus 5 ~~~~~~~kkigll~~v~livg~iIG-sGIFvsp~~Vl~~~gsvg~sL~iWv~~gi~s~~galcyaELGT~ipksGgd~ay 83 (479)
T KOG1287|consen 5 GEEVQLKKKIGLLSGVSLIVGNIIG-SGIFVSPKGVLANTGSVGLSLIIWVFCGIISIIGALCYAELGTSIPKSGGDYAY 83 (479)
T ss_pred cccccccceeeeecceeEEEEeeEe-cccccCcHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHhccccCCCcchhh
Confidence 3555789999999999999999999 999999999999998877 78899999999999999999999999999999999
Q ss_pred HhhccCCCCCchhHHHHHHHHHHH-HHHHHHHHHHHHHHH-HHHHHHHhcCCCCCCCccCchHHHHHHHHHHHHHHHHHH
Q 010352 91 AAHLASPKWGPFASWCCAWLETIG-LIAGMGTQAYAGSQT-LQSIILLCTGTNKDGGYFAPKWLFLCMYIGLTIIWAVLN 168 (512)
Q Consensus 91 ~~~~~g~~~g~~~g~~~g~~~~~~-~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 168 (512)
++++ +|+..+|...|.-++. .....+..+..+++| ++..+ ++...+.....+++.+++++++.+|
T Consensus 84 i~~a----fg~~~aF~~~wvs~l~~~p~~~Ai~altF~~Y~l~p~f---------p~c~~p~~~~~lla~~~l~~lt~~n 150 (479)
T KOG1287|consen 84 ISEA----FGPFPAFLFLWVSLLIIVPTSAAIIALTFATYLLKPFF---------PLCDVPRVASKLLAAALLVLLTLIN 150 (479)
T ss_pred HHHH----hccchhHHHHHHHHHHHhhhHHHHHHHHHHHHhhcccC---------CCCCCchHHHHHHHHHHHHHHHHHh
Confidence 9999 8888899999999987 455558889999998 44443 2355677888899999999999999
Q ss_pred hchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccccccccccccCCCCCCCchhHHHHhhhhhhhhhccccccc
Q 010352 169 TFALEVIAFIDIISMWWQVAGGLVIIIMLPLVALTTQSASYVFTHFEMSPEATGISSKPYAVILSFLVSQYSLYGYDSAA 248 (512)
Q Consensus 169 ~~g~k~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~ 248 (512)
+.++|...++|.+++..|++.+.++++.+++....++..++..+++ +.+++. ...+..++....|+|.|||...
T Consensus 151 ~~~V~~a~~vq~~ft~~Kl~al~lIii~G~~~~~~g~~~~~~~~~f----~g~~~~--~g~i~lafysglfa~~GWd~lN 224 (479)
T KOG1287|consen 151 SFSVKWATRVQIVFTIAKLLALLLIIITGLYLLFWGSTQNFENSEF----EGSDTD--VGNIALAFYSGLFAFSGWDYLN 224 (479)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHhchheeEeccccccccccc----ccCcCc--hHHHHHHHHHhhhcccCchhhc
Confidence 9999999999999999999999999999998765555444432223 222222 2348889999999999999999
Q ss_pred hhhhhccCcccccchHHHHHHHHHHHHHHHHHHHHHHhccChhhhhcCCCcccCCCcHHHHHHHHhhcccCCcchhHHHH
Q 010352 249 HLTEETKGADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNETAGAFVPAQILYDAFHGRYHNSTGAIILL 328 (512)
Q Consensus 249 ~~~~E~k~P~k~ip~ai~~~~~~~~i~y~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 328 (512)
..+||+|||+||+|||+..++.+++++|++..++...++ +++|+.+++. ....+.+.. ++. ..+.+.
T Consensus 225 ~vteEiknP~ktLP~Ai~isi~lvt~iYil~NvAy~~vl-s~~e~l~S~a-------Vav~Fa~~~----~G~-~~~~ip 291 (479)
T KOG1287|consen 225 YVTEEIKNPRRTLPRAILISIPLVTVIYVLVNVAYFTVL-SPDEILSSDA-------VAVTFADRI----LGV-FAWAIP 291 (479)
T ss_pred cchHhhcCccccchHHHHHhhHHHHHHHHHhHhheeEec-CHHHhcccch-------HHHHHHHHh----ccc-hHHHHH
Confidence 999999999999999999999999999999999999999 8899866542 333344433 444 348889
Q ss_pred HHHHHHHHHhHHHHHhhhhhhHHhhhcCCCCCcccccccccccCCchHHHHHHHHHHHHHHhccccccHHHHHHHHHHHH
Q 010352 329 IVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQLHPKHKVPSNAVWLCAAICIILGLPILKVNVVFTAITSICT 408 (512)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~sR~l~~ma~d~~lP~~~~f~~~~~~~~~P~~a~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~ 408 (512)
+.+.++++++.|+.+.+.||.++++||+|++| +.|+..|.|+.+|..++++++.++++..+. .+++++++..+
T Consensus 292 ~~ValS~~G~~n~~ifs~SR~~~~~areG~LP--~~~s~i~~~~~TP~~allf~~~~~i~~~~~-----~d~~~LIny~s 364 (479)
T KOG1287|consen 292 FSVALSLIGSLNSVIFSSSRLFYAGAREGHLP--AFFSMISVRRFTPRPALLFSGLLSIVLSLI-----GDFDQLINYVS 364 (479)
T ss_pred HHHHHHhhhhhhhHHHHHHHHHHHHHHccCcc--HHHHhhcCCCCCChHHHHHHHHHHHHHHHH-----hhHHHHHHHHH
Confidence 99999999999999999999999999999999 999999977779999999999999998873 37999999999
Q ss_pred HHHHHHHHHHHHHHHhhc-ccCccCCCcccCCchhhHHHHHHHHHHHHHHHhcCC
Q 010352 409 IGWVGGYAVPIFARMVMA-EQKFNAGPFYLGKASRPICLIAFLWICYTCSVFLLP 462 (512)
Q Consensus 409 ~~~~~~~~l~~~~~~~~r-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 462 (512)
+...+.+.+..++.++.| |+++.+||+|+|-..+. +-++.++.+++...+.
T Consensus 365 f~~~l~~~l~~~gll~lR~k~p~~~rPiKvpl~~p~---~~~~~~i~lvvip~~~ 416 (479)
T KOG1287|consen 365 FAYWLFRGLSMAGLLWLRWKHPPLPRPIKVPLFIPI---LFLLICIFLVVIPIIS 416 (479)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCCCCCCEeeeeehHH---HHHHHHHHHhheeeee
Confidence 999999999988888887 45577899999933333 3344444444444433
No 21
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family. This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.
Probab=100.00 E-value=5.8e-50 Score=414.82 Aligned_cols=407 Identities=17% Similarity=0.162 Sum_probs=329.1
Q ss_pred ccccccchHHHHHHHHHHhhhhhhHHHHHHhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCC-CChhhHHHhhc
Q 010352 16 ELRREMTLFKTFAISFSTMTLFTGIIPLYGSSLLYAGPASLVWGWVVVSFFTWFVGLAMAEICSSFPT-TGSLYFWAAHL 94 (512)
Q Consensus 16 ~l~r~l~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~G~~~~~~~~ii~~l~~~~~a~~~~el~~~~p~-~GG~y~~~~~~ 94 (512)
+++|++|++++++++++.++| +|++..+......+|+...+++|+++++++++.+++|+|+++++|+ +||.|.|+++.
T Consensus 4 ~~~~~l~~~~~~~l~ig~vIG-sGif~~~~~~~~~~g~~~~~~~wli~~~~~~~~al~~aEl~s~~P~~sGG~y~y~~~~ 82 (473)
T TIGR00905 4 AKSKKLGLFALTALVIGSMIG-SGIFSLPQNLASVAGPGAVIIGWIITGVGMLALAFVFAILATKKPELDGGIYAYAREG 82 (473)
T ss_pred ccCCCccHHHHHHHHHHHHHh-HHHHHhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCChhhhHHhH
Confidence 347899999999999999999 9999999887778888657899999999999999999999999999 99999999999
Q ss_pred cCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccCchHHHHHHHHHHHHHHHHHHhchhhH
Q 010352 95 ASPKWGPFASWCCAWLETIGLIAGMGTQAYAGSQTLQSIILLCTGTNKDGGYFAPKWLFLCMYIGLTIIWAVLNTFALEV 174 (512)
Q Consensus 95 ~g~~~g~~~g~~~g~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~k~ 174 (512)
+||..||++||.+|+.+.......+....+++..+++.. + ..+++...+.+++++++.+.+|++|+|.
T Consensus 83 ----~G~~~gf~~gw~~~~~~~~~~~~~~~~~~~~l~~~~p~~-------~-~~~~~~~~~~~~~~~~~~~~ln~~Gi~~ 150 (473)
T TIGR00905 83 ----FGPYIGFMSGWGYWLSAWIGNVAYAVLLFSALGYFFPLF-------G-SGNPVPSILGASVLLWVFTFLVLRGVRQ 150 (473)
T ss_pred ----cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-------c-CCCcHHHHHHHHHHHHHHHHHHHhCHHH
Confidence 667779999999999888877777777778887776421 1 1234555666777788899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhccccccccccccccccccC-CCCCCCchhHHHHhhhhhhhhhccccccchhhhh
Q 010352 175 IAFIDIISMWWQVAGGLVIIIMLPLVALTTQSASYVFTHFEMSPE-ATGISSKPYAVILSFLVSQYSLYGYDSAAHLTEE 253 (512)
Q Consensus 175 ~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~~~E 253 (512)
.+|+|.+.+.+|++.++++++.++.....+ ++.. ++ . ++ .+++++...++..++...+|+|.|+|.+++++||
T Consensus 151 ~~~i~~~~~~~~l~~l~~~ii~~~~~~~~~---~~~~-~~-~-~~~~p~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E 224 (473)
T TIGR00905 151 AAFINTITTIAKLIPLFLFIIIGWFWFKLD---LFTA-DF-W-GHDVPSLGSVFSQVKNTMLVTLWVFIGIEGAVVSSGR 224 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCch---hccc-cc-C-ccCCCcccchHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 999999999999998888887776542211 1111 11 1 01 1122333456888899999999999999999999
Q ss_pred ccCcccccchHHHHHHHHHHHHHHHHHHHHHHhccChhhhhcCCCcccCCCc-HHHHHHHHhhcccCCcchhHHHHHHHH
Q 010352 254 TKGADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNETAGAFV-PAQILYDAFHGRYHNSTGAIILLIVIW 332 (512)
Q Consensus 254 ~k~P~k~ip~ai~~~~~~~~i~y~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~ 332 (512)
+|| +||+||++..++.++.++|++...+..... +.+++.+.+ .| ..+...... | ++...++.+..+
T Consensus 225 ~k~-~r~iPrai~~~~~i~~~~Yil~~~~~~~~~-~~~~l~~~~------~p~~~~~~~~~~----g-~~~~~~i~i~~~ 291 (473)
T TIGR00905 225 AKN-KSDVGKATVLGTLGALVIYILITLLSLGVL-PQQELANLP------NPSMAAVLEMIV----G-KWGAVLISLGLI 291 (473)
T ss_pred Hhc-cccchHHHHHHHHHHHHHHHHHHHHHHhCc-CHHHHhhCC------CchHHHHHHHHh----C-hHHHHHHHHHHH
Confidence 999 999999999999999999999999988887 788886653 24 323333332 3 336678888899
Q ss_pred HHHHHhHHHHHhhhhhhHHhhhcCCCCCcccccccccccCCchHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHH
Q 010352 333 GSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQLHPKHKVPSNAVWLCAAICIILGLPILKVNVVFTAITSICTIGWV 412 (512)
Q Consensus 333 ~~~~~~~~~~~~~~sR~l~~ma~d~~lP~~~~f~~~~~~~~~P~~a~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~ 412 (512)
++.+++.++++.+.+|++|+|||||.+| ++|+|+| |+++|+++++++.+++.++.+......++++.+.++.++..+
T Consensus 292 is~~~~~~~~~~~~sR~~~amardg~lP--~~~~~v~-~~~tP~~Ai~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~ 368 (473)
T TIGR00905 292 ISVLGSLLSWTMLAAEVPFSAAKDGLFP--KIFGRVN-KNGAPSVALLLTNILIQLFLLLTLLTSSAYNVLVSLAVVMIL 368 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCChh--HHHHhhC-ccCCCHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999 9999999 569999999999999886655444446789999999999999
Q ss_pred HHHHHHHHHHHhhcccCccCCCcccCCchhhHHHHHHHHHHHHHHHh
Q 010352 413 GGYAVPIFARMVMAEQKFNAGPFYLGKASRPICLIAFLWICYTCSVF 459 (512)
Q Consensus 413 ~~~~l~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 459 (512)
+.|.+.+++.+++|+|++.++ .+.| +.++++.++.+++.+.....
T Consensus 369 i~y~~~~~a~~~lr~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~ 413 (473)
T TIGR00905 369 VPYLLSAAYLLKLAKVGTYPK-IKNR-KALIVGVIACVYSIWLLYAA 413 (473)
T ss_pred HHHHHHHHHHHHHHHcCCccc-cccc-hHHHHHHHHHHHHHHHHHHh
Confidence 999999999988876642221 2334 67888888888888765543
No 22
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter. Members of this protein family are putative putative glutamate/gamma-aminobutyrate antiporters. Each member of the seed alignment is found adjacent to a glutamate decarboxylase, which converts glutamate (Glu) to gamma-aminobutyrate (GABA). However, the majority belong to genome contexts with a glutaminase (converts Gln to Glu) as well as the decarboxylase that converts Glu to GABA. The specificity of the transporter remains uncertain.
Probab=100.00 E-value=8.8e-50 Score=413.91 Aligned_cols=456 Identities=15% Similarity=0.158 Sum_probs=340.2
Q ss_pred cccchHHHHHHHHHHhhhhhhHHHHHHhhhhcCCchhHHHHHHHHHHHH-HHHHHHHHHHHhhcCCCChhhHHHhhccCC
Q 010352 19 REMTLFKTFAISFSTMTLFTGIIPLYGSSLLYAGPASLVWGWVVVSFFT-WFVGLAMAEICSSFPTTGSLYFWAAHLASP 97 (512)
Q Consensus 19 r~l~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~G~~~~~~~~ii~~l~~-~~~a~~~~el~~~~p~~GG~y~~~~~~~g~ 97 (512)
||++.+++..+.+..+.+ +...+ ..+..|+. .+++|++++++. +|.+++++|+++.+|++||.|.|++|+
T Consensus 1 ~~~~~~~l~~~~~~~v~~---~~~~~--~~a~~G~~-~~~~~~i~~~~~~ip~al~~aEL~~~~P~~GG~y~~~~~a--- 71 (474)
T TIGR03813 1 KKLTVVTLAIMNITAVVS---LRGLP--AEAEYGLS-AAFYYLFAAIFFLVPVSLVAAELATAWPEKGGVFRWVGEA--- 71 (474)
T ss_pred CcccHHHHHHHHHHHHHH---hhcch--HHHHhhHH-HHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCceeeHhhh---
Confidence 569999999999888844 33333 33567887 888999998865 699999999999999999999999999
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccCchHHHHHHHHHHHHHHHHHHhchhhHHHH
Q 010352 98 KWGPFASWCCAWLETIGLIAGMGTQAYAGSQTLQSIILLCTGTNKDGGYFAPKWLFLCMYIGLTIIWAVLNTFALEVIAF 177 (512)
Q Consensus 98 ~~g~~~g~~~g~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~k~~~~ 177 (512)
+||.+||+++|.+|+.+....+......+..+....... ........+.+....+.++++++.+.+|++|+|..++
T Consensus 72 -~G~~~gf~~gw~~w~~~~~~~p~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~in~~gv~~~~~ 147 (474)
T TIGR03813 72 -FGARWGFLAIFMLWAQVTIWFPTVLTFGAVSLAFIGPEA---TVDESLAGNKLYVLVSVLFVYWLATFIALRGVAAFTK 147 (474)
T ss_pred -cChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc---ccCcccccccHHHHHHHHHHHHHHHHHHhcChHHHHH
Confidence 777779999999999987766655443333332211100 0001222345555566777778889999999999999
Q ss_pred HHHHHHHH-HHHHHHHHHHhhhhhcccccc--ccccccccccccCCCCCCCchhHHHHhhhhhhhhhccccccchhhhhc
Q 010352 178 IDIISMWW-QVAGGLVIIIMLPLVALTTQS--ASYVFTHFEMSPEATGISSKPYAVILSFLVSQYSLYGYDSAAHLTEET 254 (512)
Q Consensus 178 ~~~~~~~~-~i~~~~~~~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~~~E~ 254 (512)
++.+...+ +++.++++++.++.....+++ .++.+++. . |+..++.. +..+. ..+|+|.|+|.++..+||+
T Consensus 148 i~~~~~~~~~ii~~~~~ii~~~~~~~~g~~~~~~~~~~~~-~-p~~~~~~~----~~~~~-~~~~af~G~e~~~~~a~E~ 220 (474)
T TIGR03813 148 VAKWGGIVGTIIPAAILVILGISYLLTGGESQIPLRWDDA-F-PDFTNFDN----VVLAA-SIFLFYAGMEMNAVHVKDV 220 (474)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCHHHh-C-CCcccccc----HHHHH-HHHHHHhchhHhHHHHHhc
Confidence 99887544 455555555544432111111 11112222 1 12222332 33332 3578999999999999999
Q ss_pred cCcccccchHHHHHHHHHHHHHHHHHHHHHHhccChhhhhcCCCcccCCCcHHHHHHHHhhcccCCcchhHHHHHHHHHH
Q 010352 255 KGADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNETAGAFVPAQILYDAFHGRYHNSTGAIILLIVIWGS 334 (512)
Q Consensus 255 k~P~k~ip~ai~~~~~~~~i~y~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 334 (512)
|||+||+|||+..++.++.++|++..++..... +++++..+ .+..+.+.+..+.. |.++...++.+...++
T Consensus 221 knP~r~iPrAi~~~~~~~~~~y~l~~~~~~~~~-~~~~~~~~-------~~~~~~~~~~~~~~-g~~~~~~i~~~~~~~~ 291 (474)
T TIGR03813 221 DNPDKNYPIAILIAALGTVLIFVLGTLAIAFII-PREDISLT-------QSLLVAFDNAFHWA-GLSWLGPILAFALAIG 291 (474)
T ss_pred cCcccchhHHHHHHHHHHHHHHHHHHHHHHhcc-CHhhcccc-------ccHHHHHHHHHHHc-CchHHHHHHHHHHHHH
Confidence 999999999999999999999999999999888 65655322 12334555555443 5555677777788889
Q ss_pred HHHhHHHHHhhhhhhHHhhhcCCCCCcccccccccccCCchHHHHHHHHHHHHHHhccc--ccc-HHHHHHHHHHHHHHH
Q 010352 335 FFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQLHPKHKVPSNAVWLCAAICIILGLPI--LKV-NVVFTAITSICTIGW 411 (512)
Q Consensus 335 ~~~~~~~~~~~~sR~l~~ma~d~~lP~~~~f~~~~~~~~~P~~a~~~~~~i~~~~~~~~--~~~-~~~~~~l~~~~~~~~ 411 (512)
.+++.++++.+.+|++++++|||.+| ++|+|+| |+++|+++++++.+++.++.++. ..+ .+.++.+.++++...
T Consensus 292 ~l~~~~~~~~~~sR~~~a~ardg~lP--~~~~kv~-k~~~P~~a~~~~~~~~~~l~~~~~~~~s~~~~f~~l~~~~~~~~ 368 (474)
T TIGR03813 292 VLAGVVTWVAGPSSGMLAVAKAGYLP--TFFQKTN-KNGMPIHIMFVQGIAVSVLSVLFVVMPSVQAAFQILSQLTVILY 368 (474)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCC--HHHhccC-CCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999 9999999 89999999999998866544322 222 357889999999999
Q ss_pred HHHHHHHHHHHHhhc-ccCccCCCcccC--Cc-hhhHHHHHHHHHHHHHHHhcCCCCCCCCCCCccchhHHHHHHHHHHh
Q 010352 412 VGGYAVPIFARMVMA-EQKFNAGPFYLG--KA-SRPICLIAFLWICYTCSVFLLPTFYPISWDTFNYAPVALGVGLGLIM 487 (512)
Q Consensus 412 ~~~~~l~~~~~~~~r-~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 487 (512)
.+.|.+++++.+++| |+++.+||||.| ++ .+.++.++.+++.+.++..++|+..+.+.+++||..+.++..+++..
T Consensus 369 ~i~y~~~~~a~i~lr~~~~~~~rpf~~p~g~~g~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~ny~~~~~~~~~~~~~ 448 (474)
T TIGR03813 369 LVMYLLMFASAIYLRYSQPDRPRPYRIPGGLAGMWFIGGLGFVGSALAFVLSFIPPSQIGTGSPTRYVGLLIGLAALFVT 448 (474)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCCeEecCCccchhHHHHHHHHHHHHHHheeEeCCcccCCCchHHHHHHHHHHHHHHHH
Confidence 999999999988877 455778999997 22 45799999999999999999999989989999999999999999999
Q ss_pred hhheeeccee--eecCccccC
Q 010352 488 LWWLLDARKW--FTGPVRNID 506 (512)
Q Consensus 488 ~~~~~~~~~~--~~~~~~~~~ 506 (512)
++|++|+||+ ++++..+.+
T Consensus 449 ~~~~~~~~~~~~~~~~~~~~~ 469 (474)
T TIGR03813 449 APFLIYARRKPHWRDPNSNFE 469 (474)
T ss_pred HHHHHHHHhchhhcCcccccc
Confidence 9998877666 555644443
No 23
>TIGR00911 2A0308 L-type amino acid transporter.
Probab=100.00 E-value=2e-49 Score=414.07 Aligned_cols=409 Identities=16% Similarity=0.187 Sum_probs=318.5
Q ss_pred CCcccccccchHHHHHHHHHHhhhhhhHHHHHHhhhhcCCchh-HHHHHHHHHHHHHHHHHHHHHHHhhcCCCChhhHHH
Q 010352 13 YKQELRREMTLFKTFAISFSTMTLFTGIIPLYGSSLLYAGPAS-LVWGWVVVSFFTWFVGLAMAEICSSFPTTGSLYFWA 91 (512)
Q Consensus 13 ~~~~l~r~l~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~G~~~-~~~~~ii~~l~~~~~a~~~~el~~~~p~~GG~y~~~ 91 (512)
+++++||+++.+++++++++.++| +|++..++.....+|+.+ .+++|+++++++++.+++++|+++.+|++||.|.|+
T Consensus 36 ~~~~l~r~l~~~~~~~l~vg~iiG-sGif~~~~~~~~~~G~~g~~~~~~ii~~i~~~~~al~~aELas~~P~sGG~y~~~ 114 (501)
T TIGR00911 36 EAVALKKEITLLSGVGIIVGTIIG-SGIFVSPKGVLKNAGSVGLALIMWAVCGIFSIVGALVYAELGTTIPKSGGEYNYI 114 (501)
T ss_pred cccccCccccHhHhhHhheeceEE-eeEeecHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchhhhH
Confidence 456799999999999999999999 899999998888888754 468999999999999999999999999999999999
Q ss_pred hhccCCCCCchhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccCchHHHHHHHHHHHHHHHHHHhc
Q 010352 92 AHLASPKWGPFASWCCAWLETIG-LIAGMGTQAYAGSQTLQSIILLCTGTNKDGGYFAPKWLFLCMYIGLTIIWAVLNTF 170 (512)
Q Consensus 92 ~~~~g~~~g~~~g~~~g~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 170 (512)
++. +||..||+++|..++. +....+..+...++++...+. .++..+.+...+++++++++.+.+|++
T Consensus 115 ~~~----~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~--------~~~~~~~~~~~~i~~~~i~~~~~ln~~ 182 (501)
T TIGR00911 115 LEV----FGPLLAFLRLWIELLVIRPGSQAVNALNFAIYILTPVF--------PDCEVPEWAIRLVAVLCVLLLTLVNCL 182 (501)
T ss_pred HhH----hCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--------CCCCCchHHHHHHHHHHHHHHHHHHHh
Confidence 999 7777899999988763 445566666666666543211 234456676778888888999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccccccccccccCCCCCCCchhHHHHhhhhhhhhhccccccchh
Q 010352 171 ALEVIAFIDIISMWWQVAGGLVIIIMLPLVALTTQSASYVFTHFEMSPEATGISSKPYAVILSFLVSQYSLYGYDSAAHL 250 (512)
Q Consensus 171 g~k~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~ 250 (512)
|+|..+|++.+++.++++.++++++.++.....++..+...++. . + +...+..++..++...+|+|.|+|.++++
T Consensus 183 Gvk~~~~~~~i~~~~~l~~l~~~ii~~~~~~~~~~~~~~~~~~~-f--~--~~~~~~~~~~~a~~~~~~af~G~e~~~~~ 257 (501)
T TIGR00911 183 SVKWATRVQDIFTACKLLALLLIIITGWVQLGKGGVESLNPKNA-F--E--GTETSAGGIVLAFYSGIWAYGGWNYLNFV 257 (501)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCcccc-c--C--CCCCcHHHHHHHHHHHHHHHHhHHHHhhh
Confidence 99999999999999999998888877765432222111111111 0 1 11122456888999999999999999999
Q ss_pred hhhccCcccccchHHHHHHHHHHHHHHHHHHHHHHhccChhhhhcCCCcccCCCcHHHHHHHHhhcccCCcchhHHHHHH
Q 010352 251 TEETKGADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNETAGAFVPAQILYDAFHGRYHNSTGAIILLIV 330 (512)
Q Consensus 251 ~~E~k~P~k~ip~ai~~~~~~~~i~y~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 330 (512)
+||+|||+|++||++..++.++.++|++..++..... +.+++.+++ +....+.+. ..| ....++.+.
T Consensus 258 a~E~knP~r~iPrAi~~s~~~v~~~Y~l~~~a~~~~~-~~~~l~~~~-------~~~~~~~~~---~~g--~~~~~i~~~ 324 (501)
T TIGR00911 258 TEEVKNPYRTLPIAIIISMPIVTFIYVLTNIAYFTVL-SPEELLASL-------AVAVDFGER---LLG--VMSWAMPAL 324 (501)
T ss_pred HHHhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHhcC-CHHHHhcCh-------HHHHHHHHH---Hhh--hHHHHHHHH
Confidence 9999999999999999999999999999999998888 777775542 121222221 123 245677788
Q ss_pred HHHHHHHhHHHHHhhhhhhHHhhhcCCCCCcccccccccccCCchHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHH
Q 010352 331 IWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQLHPKHKVPSNAVWLCAAICIILGLPILKVNVVFTAITSICTIG 410 (512)
Q Consensus 331 ~~~~~~~~~~~~~~~~sR~l~~ma~d~~lP~~~~f~~~~~~~~~P~~a~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~ 410 (512)
..++.+++.++.+.+.+|++++|||||.+| ++|+|+|+|+++|+++++++.+++.+.... .++..+.++.+..
T Consensus 325 ~~is~~~~~~~~~~~~sR~l~a~ardg~lP--~~~~~v~~~~~~P~~all~~~~i~~l~~~~-----~~~~~l~~~~~~~ 397 (501)
T TIGR00911 325 VGLSCFGSVNGSLFSSSRLFFVGGREGHLP--SLLSMIHVKRLTPLPSLLIVCTLTLLMLFS-----GDIYSLINLISFA 397 (501)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCcc--HHHHHhcCCCCCCHHHHHHHHHHHHHHHcc-----CCHHHHHHHHHHH
Confidence 888999999999999999999999999999 999999999999999999998887765441 2445567788888
Q ss_pred HHHHHHHHHHHHHhhcc-cCccCCCcccCCchhhHHHHHHHHHHHHHHHhcCC
Q 010352 411 WVGGYAVPIFARMVMAE-QKFNAGPFYLGKASRPICLIAFLWICYTCSVFLLP 462 (512)
Q Consensus 411 ~~~~~~l~~~~~~~~r~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 462 (512)
..+.|.+..++.++.|+ +++.+||||.|. ....++++.+++.++...++
T Consensus 398 ~~i~y~l~~~a~i~lR~~~p~~~rp~r~p~---~~~~l~~~~~~~~~~~~~~~ 447 (501)
T TIGR00911 398 NWLFNALAVAGLLWLRYKRPEMNRPIKVPL---FFPVFFLLSCLFLIILSLYS 447 (501)
T ss_pred HHHHHHHHHHHHHheeccCCCCCCCccCch---HHHHHHHHHHHHHhhhhhcc
Confidence 88999998888877765 457788999983 34444555555544444333
No 24
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]
Probab=100.00 E-value=9.6e-50 Score=385.18 Aligned_cols=439 Identities=18% Similarity=0.227 Sum_probs=371.0
Q ss_pred CCcccccccchHHHHHHHHHHhhhhhhHHHHHHhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChhhHHHh
Q 010352 13 YKQELRREMTLFKTFAISFSTMTLFTGIIPLYGSSLLYAGPASLVWGWVVVSFFTWFVGLAMAEICSSFPTTGSLYFWAA 92 (512)
Q Consensus 13 ~~~~l~r~l~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~G~~~~~~~~ii~~l~~~~~a~~~~el~~~~p~~GG~y~~~~ 92 (512)
++++++|.|+.++.-.+++|..+| .|+|...+.+.+.+||+ .++++++++++.+...-...|+...-|++|+.-+|++
T Consensus 7 ~~~~l~rgL~~RHIqlIAiGGaIG-tGLFlGSg~~I~~AGPS-vlLaY~I~G~~~f~iMRaLGEm~~~~p~~gSF~~~a~ 84 (462)
T COG1113 7 EEQGLKRGLKNRHIQLIAIGGAIG-TGLFLGSGSAIAMAGPS-VLLAYLIAGIFVFLIMRALGEMLVANPVSGSFSDYAR 84 (462)
T ss_pred cchhhhhhhHHHHHHHHHHhhhhh-hhhhcccchhhhhhCcH-HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcHHHHHH
Confidence 455799999999999999999999 99999999999999999 9999999999999999999999999999999999999
Q ss_pred hccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccCchHHHHHHHHHHHHHHHHHHhchh
Q 010352 93 HLASPKWGPFASWCCAWLETIGLIAGMGTQAYAGSQTLQSIILLCTGTNKDGGYFAPKWLFLCMYIGLTIIWAVLNTFAL 172 (512)
Q Consensus 93 ~~~g~~~g~~~g~~~g~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~ 172 (512)
+. +||++||.+||.||..++....++....+.|++.-+ ++. |.|. .+++++++...+|+.++
T Consensus 85 ~~----lG~~Agf~tgW~YW~~wv~v~~ae~tAi~~y~~~Wf---------P~v--P~Wv---~al~~~~l~~~~NL~sV 146 (462)
T COG1113 85 KY----LGPWAGFLTGWTYWFFWVLVGIAELTAIGIYLQFWF---------PDV--PQWV---FALAAVVLLLAVNLISV 146 (462)
T ss_pred HH----hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---------CCC--cHHH---HHHHHHHHHHHHHHHHH
Confidence 99 888899999999999999999999999999999866 222 4444 34466777899999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhhhccc---cccccccccccccccCCCC-CCCchhHHHHhhhhhhhhhccccccc
Q 010352 173 EVIAFIDIISMWWQVAGGLVIIIMLPLVALT---TQSASYVFTHFEMSPEATG-ISSKPYAVILSFLVSQYSLYGYDSAA 248 (512)
Q Consensus 173 k~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~---~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~f~G~e~~~ 248 (512)
|.++..+.++..+|++.++.+++.++..... .+...-.++|. . +..| +|++..+++.++...+|+|.|.|.+.
T Consensus 147 k~FGE~EfWfAlIKV~aIi~~Iv~G~~ll~~g~~~~~~~~g~snl-~--~hGGffP~G~~g~~~~~~~v~Faf~GiElvG 223 (462)
T COG1113 147 KVFGELEFWFALIKVAAIIAFIVVGIVLLFGGFGGGGGAAGFSNL-W--DHGGFFPNGFLGFLSALQIVMFAFGGIELVG 223 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCcccccc-c--cCCCcCCCchHHHHHHHHHHHHHHhhHHHHH
Confidence 9999999999999999999998887654321 12112344555 3 3333 67777889999999999999999999
Q ss_pred hhhhhccCcccccchHHHHHHHHHHHHHHHHHHHHHHhccChhhhhcCCCcccCCCcHHHHHHHHhhcccCCcchhHHHH
Q 010352 249 HLTEETKGADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNETAGAFVPAQILYDAFHGRYHNSTGAIILL 328 (512)
Q Consensus 249 ~~~~E~k~P~k~ip~ai~~~~~~~~i~y~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 328 (512)
..++|.|||+|++|||+---...+.++|+.....+.... ||+++.+++ +||.+.+... |.+....+++
T Consensus 224 itA~Et~dP~k~ipkAin~V~~RI~iFYvgsl~vi~~l~-PW~~~~~~~----------SPFV~~f~~i-Gi~~Aa~i~N 291 (462)
T COG1113 224 ITAAEAKDPEKAIPKAINSVIWRILIFYVGSLFVILSLY-PWNQIGEDG----------SPFVTVFSLI-GIPFAAGIMN 291 (462)
T ss_pred HHHHhhcChhhHHHHHHhhhhHHHHHHHHHHHHHHheec-cccccCCCC----------CcHHHHHHHc-CCccccccee
Confidence 999999999999999999999999999999999999888 998876643 3456666665 9998999999
Q ss_pred HHHHHHHHHhHHHHHhhhhhhHHhhhcCCCCCcccccccccccCCchHHHHHHHHHHHHHHhcc-ccccHHHHHHHHHHH
Q 010352 329 IVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQLHPKHKVPSNAVWLCAAICIILGLP-ILKVNVVFTAITSIC 407 (512)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~sR~l~~ma~d~~lP~~~~f~~~~~~~~~P~~a~~~~~~i~~~~~~~-~~~~~~~~~~l~~~~ 407 (512)
+..+.+.+++.|+.+++.+|++|++|+||..| |.|+|+| |+++|+++++++.+...+..++ ...+...|..+.+..
T Consensus 292 ~VVLtAa~S~~NSglystsRmL~~la~~g~AP--k~~~kls-k~gVP~~ai~~s~~~~~~~V~Lny~~P~~vF~~v~s~s 368 (462)
T COG1113 292 FVVLTAALSALNSGLYSTSRMLYSLAKQGDAP--KAFAKLS-KRGVPVNAILLSAVVLLLGVVLNYILPEKVFELVTSSS 368 (462)
T ss_pred EEEeechhhcccccccccchHHHHHhhcCccc--HhHhhcc-ccCCCHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHH
Confidence 99999999999999999999999999999999 9999999 9999999999998888775543 234578999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcccC---ccCCCcccCCchhhHHHHHHHHHHHHHHHhcCCCCCCCCCCCccchhHHHHHHHH
Q 010352 408 TIGWVGGYAVPIFARMVMAEQK---FNAGPFYLGKASRPICLIAFLWICYTCSVFLLPTFYPISWDTFNYAPVALGVGLG 484 (512)
Q Consensus 408 ~~~~~~~~~l~~~~~~~~r~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 484 (512)
+......|.++.++.+++||++ .++.+||.| +.|...++.+.+..+.++...+.+.. .+......++++
T Consensus 369 ~~~~l~vW~~I~~s~l~~rk~~~~~~~~~~fkm~-~~p~~~~l~l~fl~~vlv~m~~~~~t-------~~~~~~~~~~~~ 440 (462)
T COG1113 369 GLGLLFVWLMILLSQLKLRKAKPAEGKKLKFKMP-LYPFTNYLTLAFLAFVLVLMLFDPDT-------RISLLVGPVWLV 440 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHhcchhcccCcccccc-cccHHHHHHHHHHHHHHHHHHcCccc-------chHHHHHHHHHH
Confidence 9999999999999999998743 344579999 99999999999888888887766322 123344445555
Q ss_pred HHhhhheeeccee
Q 010352 485 LIMLWWLLDARKW 497 (512)
Q Consensus 485 ~~~~~~~~~~~~~ 497 (512)
+..++|+.++||+
T Consensus 441 ~l~i~~~~~~~~~ 453 (462)
T COG1113 441 LLGIGYLVKRKKK 453 (462)
T ss_pred HHHHHHHHhhhhh
Confidence 5555555554443
No 25
>PRK10197 gamma-aminobutyrate transporter; Provisional
Probab=100.00 E-value=5.6e-49 Score=403.84 Aligned_cols=398 Identities=16% Similarity=0.138 Sum_probs=320.2
Q ss_pred HHHHHhhhhhhHHHHHHhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChhhHHHhhccCCCCCchhHHHHH
Q 010352 29 ISFSTMTLFTGIIPLYGSSLLYAGPASLVWGWVVVSFFTWFVGLAMAEICSSFPTTGSLYFWAAHLASPKWGPFASWCCA 108 (512)
Q Consensus 29 ~~~~~~~~~~gi~~~~~~~~~~~G~~~~~~~~ii~~l~~~~~a~~~~el~~~~p~~GG~y~~~~~~~g~~~g~~~g~~~g 108 (512)
+++|.++| +|++..++.+.+.+||. ++++|+++++++++.+++++|+++++|++||.|.|++|. +||.+||.+|
T Consensus 2 ~~ig~~IG-sGif~~~g~~~~~aG~~-~ll~~~i~gi~~~~~al~~aEL~s~~P~~Gg~y~y~~~~----~G~~~gf~~g 75 (446)
T PRK10197 2 LSIAGVIG-ASLFVGSSVAIAEAGPA-VLLAYLFAGLLVVMIMRMLAEMAVATPDTGSFSTYADKA----IGRWAGYTIG 75 (446)
T ss_pred eeecchhH-hHHHHHhHHHHHhcChH-HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHH----cChHHHHHHH
Confidence 46788999 99999999999999997 999999999999999999999999999999999999999 7777899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccCchHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHH
Q 010352 109 WLETIGLIAGMGTQAYAGSQTLQSIILLCTGTNKDGGYFAPKWLFLCMYIGLTIIWAVLNTFALEVIAFIDIISMWWQVA 188 (512)
Q Consensus 109 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~k~~~~~~~~~~~~~i~ 188 (512)
|.+|+.+....+.++.....++.... + ......++++++++.+.+|++|+|..+++|.+++.+|++
T Consensus 76 w~~~~~~~~~~~~~~~~~~~~~~~~~---------~-----~~~~~~~~~~~l~~~~~lN~~gv~~~~~i~~~~~~~ki~ 141 (446)
T PRK10197 76 WLYWWFWVLVIPLEANIAAMILHSWV---------P-----GIPIWLFSLVITLALTGSNLLSVKNYGEFEFWLALCKVI 141 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcc---------c-----cCcHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHH
Confidence 99999999888888766666554321 1 112345667788889999999999999999999999999
Q ss_pred HHHHHHHhhhhhcccccc--ccccccccccccCCCCCCCchhHHHHhhhhhhhhhccccccchhhhhccCcccccchHHH
Q 010352 189 GGLVIIIMLPLVALTTQS--ASYVFTHFEMSPEATGISSKPYAVILSFLVSQYSLYGYDSAAHLTEETKGADKTGPIAIL 266 (512)
Q Consensus 189 ~~~~~~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~~~E~k~P~k~ip~ai~ 266 (512)
.++.+++.++.......+ ....+++. . ++...++++..++..++...+|+|.|+|.++..+||+|||+||+||++.
T Consensus 142 ~li~~ii~~~~~~~g~~~~~~~~~~~~~-~-~~~~~~p~g~~~~~~a~~~~~faf~G~e~~~~~a~E~knP~r~iPrai~ 219 (446)
T PRK10197 142 AILAFIFLGAVAISGFYPYAEVSGISRL-W-DSGGFMPNGFGAVLSAMLITMFSFMGAEIVTIAAAESDTPEKHIVRATN 219 (446)
T ss_pred HHHHHHHHHHHHhcCCCCCCCCCcchhc-C-CCCCCCcccHHHHHHHHHHHHHHHhCHHHHHHHHHHhcChhhhHHHHHH
Confidence 988887776653221111 11111121 1 0111133444579999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhccChhhhhcCCCcccCCCcHHHHHHHHhhcccCCcchhHHHHHHHHHHHHHhHHHHHhhh
Q 010352 267 SSIGIISIFGWALILALCFSIQDFSYLYDKSNETAGAFVPAQILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSA 346 (512)
Q Consensus 267 ~~~~~~~i~y~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (512)
.+...+.++|++..+...... ++++. +.+. ..+ +....+.. |.++...++.+.++++.+++.|+++++.
T Consensus 220 ~~~~~i~i~Yil~~~~~~~~~-p~~~~-~~~~----~~~----~~~~~~~~-g~~~~~~ii~~~i~~~~~~~~n~~~~~~ 288 (446)
T PRK10197 220 SVIWRISIFYLCSIFVVVALI-PWNMP-GLKA----VGS----YRSVLELL-NIPHAKLIMDCVILLSVTSCLNSALYTA 288 (446)
T ss_pred HHHHHHHHHHHHHHHHHheec-CcCcc-cccc----cCc----HHHHHHHc-CchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999988888 55432 1111 112 22223323 6666778888889999999999999999
Q ss_pred hhhHHhhhcCCCCCcccccccccccCCchHHHHHHHHHHHHHHhccc-cccHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 010352 347 ARVVYALSRDKGIPFSSIWRQLHPKHKVPSNAVWLCAAICIILGLPI-LKVNVVFTAITSICTIGWVGGYAVPIFARMVM 425 (512)
Q Consensus 347 sR~l~~ma~d~~lP~~~~f~~~~~~~~~P~~a~~~~~~i~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~ 425 (512)
+|++|+|||||.+| ++|+|+| |+++|++|++++.+++.+..+.. ..+...++.+.+..+....+.|.+.+++.+++
T Consensus 289 sR~l~a~ardg~lP--~~~~~~~-~~~~P~~Ail~~~~~~~l~~l~~~~~~~~~~~~l~~~~~~~~li~y~~~~~a~i~l 365 (446)
T PRK10197 289 SRMLYSLSRRGDAP--AVMGKIN-RSKTPYVAVLLSTGAAFLTVVVNYYAPAKVFKFLIDSSGAIALLVYLVIAVSQLRM 365 (446)
T ss_pred HHHHHHHHcCCCcC--HHHHhhC-cCCCcHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999 9999999 89999999999988877654432 23355799999999999999999999999988
Q ss_pred ccc---CccCCCcccCCchhhHHHHHHHHHHHHHHHhcCCC
Q 010352 426 AEQ---KFNAGPFYLGKASRPICLIAFLWICYTCSVFLLPT 463 (512)
Q Consensus 426 r~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (512)
||+ ++.++|||.| ++|..+++++.++.+.++...+++
T Consensus 366 r~~~~~~~~~~~~~~~-~~p~~~~~~i~~~~~~~~~~~~~~ 405 (446)
T PRK10197 366 RKILRAEGSEIRLRMW-LYPWLTWLVIGFITFVLVVMLFRP 405 (446)
T ss_pred HHHHHhcCCCCCCcCC-CcchHHHHHHHHHHHHHHHHHHCc
Confidence 864 3346788888 899999999999988888777664
No 26
>PRK10435 cadB lysine/cadaverine antiporter; Provisional
Probab=100.00 E-value=2.4e-48 Score=398.58 Aligned_cols=394 Identities=14% Similarity=0.116 Sum_probs=308.7
Q ss_pred ccccccchHHHHHHHHHHhhhhhhHHHHHHhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChhhHHHhhcc
Q 010352 16 ELRREMTLFKTFAISFSTMTLFTGIIPLYGSSLLYAGPASLVWGWVVVSFFTWFVGLAMAEICSSFPTTGSLYFWAAHLA 95 (512)
Q Consensus 16 ~l~r~l~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~G~~~~~~~~ii~~l~~~~~a~~~~el~~~~p~~GG~y~~~~~~~ 95 (512)
+.+|+++++++++++++.++| +|++..++.. +.+|+. ++++|+++++.+++.+++++|+++++|++||.|.|++| +
T Consensus 2 ~~~~~lg~~~~~~l~vg~~IG-sGif~lp~~~-a~~G~~-~i~~wli~~~~~l~~al~~aEL~s~~P~~GG~y~y~~~-~ 77 (435)
T PRK10435 2 SSAKKIGLFACTGVVAGNMMG-SGIALLPANL-ASIGSI-AIWGWIISIIGAMSLAYVYARLATKNPQQGGPIAYAGE-I 77 (435)
T ss_pred CCCCcCCHHHHHHHHHhhHHH-HHHHHHHHHH-HHhHHH-HHHHHHHHHHHHHHHHHHHHHHHhhCCCCCChhHHHHH-H
Confidence 457999999999999999999 9999988865 567887 99999999999999999999999999999999999998 4
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccCchHHHHHHHHHHHHHHHHHHhchhhHH
Q 010352 96 SPKWGPFASWCCAWLETIGLIAGMGTQAYAGSQTLQSIILLCTGTNKDGGYFAPKWLFLCMYIGLTIIWAVLNTFALEVI 175 (512)
Q Consensus 96 g~~~g~~~g~~~g~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~k~~ 175 (512)
|| .+||.++|.+|................|+..+++. . .++....++.++++++++.+|.+|+|..
T Consensus 78 g~----~~gf~~gw~~~~~~~~~~~~~~~~~~~y~~~~~p~---------~-~~~~~~~~~~~~i~~~~~~ln~~gvk~~ 143 (435)
T PRK10435 78 SP----AFGFQTGVLYYHANWIGNLAIGITAVSYLSTFFPV---------L-NDPIPAGIACIAIVWVFTFVNMLGGTWV 143 (435)
T ss_pred Cc----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc---------c-CChHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 54 56999999999876666666666677787765531 1 1233344556677778999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhccccccccccccccccccCCCCCCCchhHHHHhhhhhhhhhccccccchhhhhcc
Q 010352 176 AFIDIISMWWQVAGGLVIIIMLPLVALTTQSASYVFTHFEMSPEATGISSKPYAVILSFLVSQYSLYGYDSAAHLTEETK 255 (512)
Q Consensus 176 ~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~~~E~k 255 (512)
++++.+.++++++.++.+.+.++... ++.++ ..++ ++.+ ++++.++..++...+|+|.|+|.++..+||+|
T Consensus 144 ~~i~~i~~~~~li~~~~~~i~g~~~~---~~~~~-~~~~----~~~~-~~~~~~~~~a~~~~~faf~G~E~~~~~a~E~k 214 (435)
T PRK10435 144 SRLTTIGLVLVLIPVVGTAIVGWHWF---DAATY-AANW----NTSD-TTDGHAIIKSILLCLWAFVGVESAAVSTGMVK 214 (435)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHc---CHHhh-cccc----cCCC-CchHHHHHHHHHHHHHHHhhHHHHHHHHHHhh
Confidence 99999988888776665555444332 11111 1222 1111 12256799999999999999999999999999
Q ss_pred CcccccchHHHHHHHHHHHHHHHHHHHHHHhccChhhhhcCCCcccCCCcHHHHHHHHhhcccCCcchhHHHHHHHHHHH
Q 010352 256 GADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNETAGAFVPAQILYDAFHGRYHNSTGAIILLIVIWGSF 335 (512)
Q Consensus 256 ~P~k~ip~ai~~~~~~~~i~y~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 335 (512)
||+||+|||+..+..++.++|++......... |++++.+++ .|....+. .. +.++...++.+..++++
T Consensus 215 nP~r~iPrAi~~~~~iv~ilYil~~~~~~~~~-p~~~~~~~~------~p~~~~~~----~~-~g~~~~~~i~~~~~i~~ 282 (435)
T PRK10435 215 NPKRTVPLATMLGTGLAGIIYIAATQVISGMF-PASVMAASG------APFAISAS----TI-LGNWAAPLVSAFTAFAC 282 (435)
T ss_pred CccccccHHHHHHHHHHHHHHHHHHHHHHhcC-CHHHHhcCC------CcHHHHHH----HH-hchhHHHHHHHHHHHHH
Confidence 99999999999999999999999999998888 777775442 35433333 33 34447778888888899
Q ss_pred HHhHHHHHhhhhhhHHhhhcCCCCCcccccccccccCCchHHHHHHHHHHHHHHhcc----ccc---cHHHHHHHHHHHH
Q 010352 336 FFGGLSVTTSAARVVYALSRDKGIPFSSIWRQLHPKHKVPSNAVWLCAAICIILGLP----ILK---VNVVFTAITSICT 408 (512)
Q Consensus 336 ~~~~~~~~~~~sR~l~~ma~d~~lP~~~~f~~~~~~~~~P~~a~~~~~~i~~~~~~~----~~~---~~~~~~~l~~~~~ 408 (512)
+++.+++++..+|..++|||||.+| |+|+|+| |+|+|+++++++.++..++... ... ..+.++.+.++++
T Consensus 283 l~~~~~~~~~~~r~~~~~ardG~lP--~~f~k~n-k~g~P~~Al~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~ 359 (435)
T PRK10435 283 LTSLGSWMMLVGQAGVRAANDGNFP--KVYGEVD-KNGIPKKGLLLAAVKMTALMILITLMNSSGGKASDLFGELTGIAV 359 (435)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCcc--HHHHhhC-cCCCCHHHHHHHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHH
Confidence 9999999999999999999999999 9999999 8999999999998877654321 111 3467999999999
Q ss_pred HHHHHHHHHHHHHHHhhcccCccCCCcccCCchhhHHHHHHHHHHHHHH
Q 010352 409 IGWVGGYAVPIFARMVMAEQKFNAGPFYLGKASRPICLIAFLWICYTCS 457 (512)
Q Consensus 409 ~~~~~~~~l~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (512)
...++.|.+.+++.+++|++ ++|.+ ..+..+.++.+++.+.+.
T Consensus 360 ~~~l~~y~~~~~~~ir~~~~-----~~~~~-~~~~~~~~~~~~~~~~~~ 402 (435)
T PRK10435 360 LLTMLPYFYSCVDLIRFEGV-----NIRNF-VSLICSVLGCVFCFIALM 402 (435)
T ss_pred HHHHHHHHHHHHHHHHhcCC-----chhHH-HHHHHHHHHHHHHHHHHH
Confidence 99999999999999877542 13333 445666666666655543
No 27
>TIGR00909 2A0306 amino acid transporter.
Probab=100.00 E-value=2.3e-48 Score=399.58 Aligned_cols=418 Identities=18% Similarity=0.212 Sum_probs=336.9
Q ss_pred cccccchHHHHHHHHHHhhhhhhHHHHHHhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChhhHHHhhccC
Q 010352 17 LRREMTLFKTFAISFSTMTLFTGIIPLYGSSLLYAGPASLVWGWVVVSFFTWFVGLAMAEICSSFPTTGSLYFWAAHLAS 96 (512)
Q Consensus 17 l~r~l~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~G~~~~~~~~ii~~l~~~~~a~~~~el~~~~p~~GG~y~~~~~~~g 96 (512)
+||+++.++.+++.++.++| +|++..++.....+|+. .+++|+++++..++.+++++|+++++|++||.|.|++|.
T Consensus 1 l~r~l~~~~~~~~~i~~~ig-~gi~~~~~~~~~~~G~~-~~l~~li~~~~~~~~a~~~~el~~~~p~~Gg~y~~~~~~-- 76 (429)
T TIGR00909 1 LSRELGLFDLTMLGIGAMIG-TGIFVVTGIAAGKAGPA-VILSFVLAGLTALFIALVYAELAAMLPVAGSPYTYAYEA-- 76 (429)
T ss_pred CCccccHHHHHHHHHhhhhc-chHHHhHHHHHHHcCCH-HHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcceeeHHHH--
Confidence 58999999999999999998 89999998888888987 889999999999999999999999999999999999999
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccCchHH---------HHHHHHHHHHHHHHH
Q 010352 97 PKWGPFASWCCAWLETIGLIAGMGTQAYAGSQTLQSIILLCTGTNKDGGYFAPKWL---------FLCMYIGLTIIWAVL 167 (512)
Q Consensus 97 ~~~g~~~g~~~g~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~i~~~~~~~~~~~ 167 (512)
+||..|++++|.+++.+....+..+...++++..+++.. +...+.+. .....++++++++.+
T Consensus 77 --~G~~~g~~~gw~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l 147 (429)
T TIGR00909 77 --MGELTAFIIGWSLWLEYGVAVAAVAVGWGGYLQEFLPGV-------GLDLPAVLTAKPGNGGVFNLPALLIVLFLTYI 147 (429)
T ss_pred --hCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-------cccCchhhhcCCcccccccHHHHHHHHHHHHH
Confidence 677779999999999999999999999999998877531 11111111 113456788889999
Q ss_pred HhchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccccccccccccCCCCCCCchhHHHHhhhhhhhhhcccccc
Q 010352 168 NTFALEVIAFIDIISMWWQVAGGLVIIIMLPLVALTTQSASYVFTHFEMSPEATGISSKPYAVILSFLVSQYSLYGYDSA 247 (512)
Q Consensus 168 ~~~g~k~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~ 247 (512)
|++|+|..+|++.+++.++++.++++++.++.... ..+ ++++ . +.+..++..++...+|+|.|+|.+
T Consensus 148 ~~~g~~~~~~~~~v~~~~~i~~l~~~~~~~~~~~~---~~~--~~~~----~----~~~~~~~~~~~~~~~~af~G~e~~ 214 (429)
T TIGR00909 148 LYLGAKESGKVNDILVVLKVAALLLFAALGAIHFA---SNN--YTPF----M----PMGFGGVGAATALVFFAFIGFEAI 214 (429)
T ss_pred HHhCcHHHHHHHHHHHHHHHHHHHHhhhHHHhhCc---HHh--cCCC----C----CCcHHHHHHHHHHHHHHHhhHHHH
Confidence 99999999999999999999988777766654321 111 1222 1 112345888999999999999999
Q ss_pred chhhhhccCcccccchHHHHHHHHHHHHHHHHHHHHHHhccChhhhhcCCCcccCCCcHHHHHHHHhhcccCCcchhHHH
Q 010352 248 AHLTEETKGADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNETAGAFVPAQILYDAFHGRYHNSTGAIIL 327 (512)
Q Consensus 248 ~~~~~E~k~P~k~ip~ai~~~~~~~~i~y~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 327 (512)
++++||+|||+|++||++..++.++.++|++......... |.+++.+++ .|... ...+. +.++...++
T Consensus 215 ~~~~~E~~~p~r~ip~ai~~~~~~~~v~Yil~~~~~~~~~-~~~~~~~~~------~~~~~----~~~~~-~~~~~~~~~ 282 (429)
T TIGR00909 215 STAAEEVKNPERDIPKAIILSLIVVTLLYVLVAAVILGAV-PWRQLAGST------APLSL----VGYDL-GQGIGGLIL 282 (429)
T ss_pred HhhHHhccCccccccHHHHHHHHHHHHHHHHHHHHHhcCc-CHHHhCCCC------cHHHH----HHHHh-CchHHHHHH
Confidence 9999999999999999999999999999999998888777 777775543 23333 33333 555578888
Q ss_pred HHHHHHHHHHhHHHHHhhhhhhHHhhhcCCCCCcccccccccccCCchHHHHHHHHHHHHHHhccccccHHHHHHHHHHH
Q 010352 328 LIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQLHPKHKVPSNAVWLCAAICIILGLPILKVNVVFTAITSIC 407 (512)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~sR~l~~ma~d~~lP~~~~f~~~~~~~~~P~~a~~~~~~i~~~~~~~~~~~~~~~~~l~~~~ 407 (512)
.+..+++.+++.++.+.+.+|++++++|||.+| ++|+|+|||+++|+++++++.+++.++... ..++.+.++.
T Consensus 283 ~i~~~~~~~~~~~~~~~~~sR~~~~~a~dg~lP--~~~~~~~~~~~~P~~a~~~~~~i~~~~~~~-----~~~~~l~~~~ 355 (429)
T TIGR00909 283 TAGAVFSIASVMLAGIYGTSRVLFAMSRDGLLP--GSLSKVHPKTGTPHMSIIIFSLTAALLASL-----VPLEGLAELT 355 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCc--HHHHHcCCCCCCcHHHHHHHHHHHHHHHHH-----cCHHHHHHHH
Confidence 999999999999999999999999999999999 999999999999999999999988876542 2467889999
Q ss_pred HHHHHHHHHHHHHHHHhhcc-cCccCCCcccCCchhhHHHHHHHHHHHHHHHhcCCCCCCCCCCCccchhHHHHHHHHHH
Q 010352 408 TIGWVGGYAVPIFARMVMAE-QKFNAGPFYLGKASRPICLIAFLWICYTCSVFLLPTFYPISWDTFNYAPVALGVGLGLI 486 (512)
Q Consensus 408 ~~~~~~~~~l~~~~~~~~r~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 486 (512)
+....+.|.+.+++.+++|| |++.+||||.| ..+....+.+..+.+...... . ..+....+++..+
T Consensus 356 ~~~~~~~y~~~~~a~~~lr~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~--------~----~~~~~~~~~~~~g 422 (429)
T TIGR00909 356 SIGTLIAFAAVNVAVIILRRRRPDIQRAFRCP-LVPVLPVLVVSYCIYLLLNLG--------P----GTTVWFLVWMLLG 422 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCC-cchHHHHHHHHHHHHHHHHcc--------H----HHHHHHHHHHHHH
Confidence 99999999998888877764 45667899998 777777666655555433221 1 1335566677777
Q ss_pred hhhhee
Q 010352 487 MLWWLL 492 (512)
Q Consensus 487 ~~~~~~ 492 (512)
..+|.+
T Consensus 423 ~~~y~~ 428 (429)
T TIGR00909 423 SVFYFI 428 (429)
T ss_pred HHHHHc
Confidence 777654
No 28
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter. Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.
Probab=100.00 E-value=4.2e-48 Score=400.43 Aligned_cols=407 Identities=17% Similarity=0.132 Sum_probs=318.0
Q ss_pred cccchHHHHHHHHHHhhhhhhHHHHHHhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCC-ChhhHHHhhccCC
Q 010352 19 REMTLFKTFAISFSTMTLFTGIIPLYGSSLLYAGPASLVWGWVVVSFFTWFVGLAMAEICSSFPTT-GSLYFWAAHLASP 97 (512)
Q Consensus 19 r~l~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~G~~~~~~~~ii~~l~~~~~a~~~~el~~~~p~~-GG~y~~~~~~~g~ 97 (512)
|++|++++++++++.++| +|++..++.....+||...+++|+++++.+++.+++++|+++++|++ ||.|.|++++
T Consensus 1 ~~lgl~~~~~l~vg~~IG-sGif~~~~~~~~~ag~~~~l~~w~i~~~~~~~~al~~aeL~s~~P~~gGG~y~y~~~~--- 76 (468)
T TIGR03810 1 KKLGLGALTALVVGSMIG-SGIFSLPSDMAAGAAAGAVLIGWVITGVGMLALAFSFQNLANKKPELDGGVYSYAKAG--- 76 (468)
T ss_pred CCCCHHHHHHHHHHhHHh-hHHHHhHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCChhhhHHhH---
Confidence 789999999999999999 99999999888888987688999999999999999999999999997 5999999999
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccCchHHHHHHHHHHHHHHHHHHhchhhHHHH
Q 010352 98 KWGPFASWCCAWLETIGLIAGMGTQAYAGSQTLQSIILLCTGTNKDGGYFAPKWLFLCMYIGLTIIWAVLNTFALEVIAF 177 (512)
Q Consensus 98 ~~g~~~g~~~g~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~k~~~~ 177 (512)
+||+.||++||.+|+.+....+.++.....++...++. .+ ..+......+..+++++++.+|++|+|..++
T Consensus 77 -fG~~~gf~~gw~~w~~~~~~~~~~~~~~~~~~~~~~p~-------~~-~~~~~~~~~~~~~~~~~~~~ln~~Gv~~~~~ 147 (468)
T TIGR03810 77 -FGPFMGFISAWGYWLSAWLGNVAYATLLFSTLGYFFPI-------FG-GGNNPPSIIGASVLLWCVHFLVLRGVEGAAF 147 (468)
T ss_pred -cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-------cc-CCCcHHHHHHHHHHHHHHHHHHHhCHHHHHH
Confidence 78888999999999998777777666666666654422 01 1122333455666777889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhccccccccccccccccccCCCCCCCchhHHHHhhhhhhhhhccccccchhhhhccCc
Q 010352 178 IDIISMWWQVAGGLVIIIMLPLVALTTQSASYVFTHFEMSPEATGISSKPYAVILSFLVSQYSLYGYDSAAHLTEETKGA 257 (512)
Q Consensus 178 ~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~~~E~k~P 257 (512)
+|.+.+..|++.++++++.++.....+...+..+++. . +...+++...++..++...+|+|.|+|.++.++||.||
T Consensus 148 i~~i~~~~ki~~l~~~ii~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~e~k~- 223 (468)
T TIGR03810 148 INTITTIAKLVPLFVFIVIGIFAFKGDTFTNDFWGNA-N--GGFSLGSVMTQVKNMMLVTVWVFIGIEGASMLSARAEK- 223 (468)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcHhhcCccccccc-c--ccCccccHHHHHHHHHHHHHHHHHhHhHHhhhHhhccC-
Confidence 9999999999998888877655422111000001111 0 11123333445778888999999999999999999998
Q ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHhccChhhhhcCCCcccCCCcHHHHHHHHhhcccCCcchhHHHHHHHHHHHHH
Q 010352 258 DKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNETAGAFVPAQILYDAFHGRYHNSTGAIILLIVIWGSFFF 337 (512)
Q Consensus 258 ~k~ip~ai~~~~~~~~i~y~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 337 (512)
+||+||++..++..+.++|++......... +.+++.+.++ |. ....++.. ..++...++.++.+++.++
T Consensus 224 ~k~ip~ai~~~~~~v~~lY~l~~~~~~g~~-~~~~l~~~~~------p~---~~~~~~~~-~g~~~~~~i~~~~~is~~~ 292 (468)
T TIGR03810 224 RSDVGKATVIGLIGVLAIYVLVSVLSYGIM-TQAQLAGLKN------PS---MAYVLEHM-VGTWGAVLINIGLIISILG 292 (468)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHhCc-CHHHHhcCCC------ch---HHHHHHHH-cchHHHHHHHHHHHHHHHH
Confidence 799999999999999999999999988888 7777765432 31 22223333 2344778889999999999
Q ss_pred hHHHHHhhhhhhHHhhhcCCCCCcccccccccccCCchHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHH
Q 010352 338 GGLSVTTSAARVVYALSRDKGIPFSSIWRQLHPKHKVPSNAVWLCAAICIILGLPILKVNVVFTAITSICTIGWVGGYAV 417 (512)
Q Consensus 338 ~~~~~~~~~sR~l~~ma~d~~lP~~~~f~~~~~~~~~P~~a~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l 417 (512)
+.++++.+.+|++++|||||.+| ++|+|+| |+++|+++++++.+++.++.+....+.+.++.+.++.+....+.|.+
T Consensus 293 ~~~~~~~~~sR~~~a~ardg~lP--~~f~k~~-~~~tP~~al~~~~~i~~~~~l~~~~~~~~~~~l~~~~~~~~li~y~~ 369 (468)
T TIGR03810 293 AWLSWTLLPAEIPLLMAKDKLMP--KYFGKEN-ANGAPTNALWLTNGLIQIFLLTTLFSEQAYNFAISLATSAILVPYLW 369 (468)
T ss_pred HHHHHHHHHHHHHHHHHhCCCcc--HHHHhhC-CCCCCHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999 9999999 88999999999999887765544455688999999999999999999
Q ss_pred HHHHHHhhcccCccCCCcccCCchhhHHHHHHHHHHHHHHHh
Q 010352 418 PIFARMVMAEQKFNAGPFYLGKASRPICLIAFLWICYTCSVF 459 (512)
Q Consensus 418 ~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 459 (512)
.+++.++.|+|+++++ ..+ ..+.++.++.+++.+.....
T Consensus 370 ~~~~~~~l~~~~~~~~--~~~-~~~~~~~l~~~~~~~~~~~~ 408 (468)
T TIGR03810 370 SAAYQVKLSWRGGQER--GRR-KQLLIGLVALLYAVWLIYAA 408 (468)
T ss_pred HHHHHHHHHHhcCCcc--chh-hhHHHHHHHHHHHHHHHHHh
Confidence 9999988876542111 111 22566677777776665544
No 29
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter. Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009
Probab=100.00 E-value=6.8e-48 Score=400.29 Aligned_cols=445 Identities=14% Similarity=0.118 Sum_probs=321.1
Q ss_pred ccccchHHHHHHHHHHhhhhhhHHHHHHhhhhcCCchhHHHHHHHHHHH-HHHHHHHHHHHHhhcC-CCChhhHHHhhcc
Q 010352 18 RREMTLFKTFAISFSTMTLFTGIIPLYGSSLLYAGPASLVWGWVVVSFF-TWFVGLAMAEICSSFP-TTGSLYFWAAHLA 95 (512)
Q Consensus 18 ~r~l~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~G~~~~~~~~ii~~l~-~~~~a~~~~el~~~~p-~~GG~y~~~~~~~ 95 (512)
+||+++++++.+.++.+ .++...+ ..+..|.. .+..|++++++ .+|.+++++|+++.+| ++||.|.|++|+
T Consensus 3 ~~~l~~~~~~~~~~~~v---~~~~~~~--~~a~~G~~-~i~~~i~~~l~~~lp~al~~AELas~~p~~~GG~y~wv~~a- 75 (507)
T TIGR00910 3 AKKLSLFGFFAITASMV---LAVYEYP--TFATSGFH-LVFFLLLGGILWFIPVALCAAEMATVDGWEEGGIFAWVSNT- 75 (507)
T ss_pred CcEeeHHHHHHHHHHHH---HHHHhhH--HHHHhhHH-HHHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCeeeehhhc-
Confidence 57899999999999988 4554334 35567877 77777887775 7899999999999997 899999999999
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccCchHHHHHHHHHHHHHHHHHHhchhhHH
Q 010352 96 SPKWGPFASWCCAWLETIGLIAGMGTQAYAGSQTLQSIILLCTGTNKDGGYFAPKWLFLCMYIGLTIIWAVLNTFALEVI 175 (512)
Q Consensus 96 g~~~g~~~g~~~g~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~k~~ 175 (512)
+|+.+||+++|.+|+......+.........+.+.... .++..+.+...++.++++++++.+|++|.|..
T Consensus 76 ---~G~~~Gf~~~~~~W~~~~~~~~~~~~~~~~~~~y~~~~-------~~~~~~~~~~~i~~l~i~~~~t~~n~~G~k~~ 145 (507)
T TIGR00910 76 ---LGERFGFAAIFFGWFQIAIGFIPMIYFILGALSYILKF-------PALNEDPIIKFIAALIIFWALAFSQFGGTKRT 145 (507)
T ss_pred ---cCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-------chhccCcHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 55566999999999987665554433333333333211 23334566666677778889999999999999
Q ss_pred HHHHHHHHHHHHHH-HHHHHHhhhhhcccccccc--ccccccccccCCCCCCCchhHHHHhhhhhhhhhccccccchhhh
Q 010352 176 AFIDIISMWWQVAG-GLVIIIMLPLVALTTQSAS--YVFTHFEMSPEATGISSKPYAVILSFLVSQYSLYGYDSAAHLTE 252 (512)
Q Consensus 176 ~~~~~~~~~~~i~~-~~~~~i~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~~~ 252 (512)
++++.+.....++. .+++++.+......+++.. ...+++ . +++.+ .+....+...+|+|.|+|.++.++|
T Consensus 146 ~~i~~i~~~~~~~i~~~ili~l~~~~~~~g~~~~~~~~~~~~-~----p~~~~--~~~~~~~~~~~faf~G~E~~a~~a~ 218 (507)
T TIGR00910 146 AKIAKAGFFAGILIPAFILFALAAAYFHGGAPIAIEIDSHAF-F----PDFSK--VGTLVVFVAFIGAYMGVEASASHIN 218 (507)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccCCcHHhc-C----CCccc--ccHHHHHHHHHHHHhcHHHHHHHHH
Confidence 99998876554444 3333333332221122111 111222 1 12221 1234444556899999999999999
Q ss_pred hccCcccccchHHHHHHHHHHHHHHHHHHHHHHhccChhhhhcCCCcccCCCcHHHHHHHHhhccc-CCcchhHHHHHHH
Q 010352 253 ETKGADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNETAGAFVPAQILYDAFHGRY-HNSTGAIILLIVI 331 (512)
Q Consensus 253 E~k~P~k~ip~ai~~~~~~~~i~y~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~ 331 (512)
|+|||+||+|||+..+++++.++|.+..+.+.... |.+++..++ +..+.+........ +..+...++.+..
T Consensus 219 E~knP~r~~PrAi~~~~i~~~~l~~l~~~~i~~~~-p~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~ii~~~~ 290 (507)
T TIGR00910 219 ELENPGRDYPLAMILLMIAAICLDAIGGFSIAAVI-PGKEINLSA-------GVIQTFQTLILHFAHEIEWLVKVIAALI 290 (507)
T ss_pred HccCCcccccHHHHHHHHHHHHHHHHHHHHHheec-Chhhcccch-------HHHHHHHHHHHhhccchhHHHHHHHHHH
Confidence 99999999999999999999999999888887777 555543221 22244443333221 1234566777888
Q ss_pred HHHHHHhHHHHHhhhhhhHHhhhcCCCCCcccccccccccCCchHHHHHHHHHHHHHHhcccc----ccHHHHHHHHHHH
Q 010352 332 WGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQLHPKHKVPSNAVWLCAAICIILGLPIL----KVNVVFTAITSIC 407 (512)
Q Consensus 332 ~~~~~~~~~~~~~~~sR~l~~ma~d~~lP~~~~f~~~~~~~~~P~~a~~~~~~i~~~~~~~~~----~~~~~~~~l~~~~ 407 (512)
+++.+++.++++.+.+|+++++||||.+| ++|+|+| |+++|+++++++++++.++.++.. ++...+..+.+++
T Consensus 291 ~~~~l~~~~~~i~~~sR~l~~~ardg~lP--~~~~k~n-k~~~P~~a~~~~~~i~~l~~~~~~~~~~~~~~~f~~l~~~~ 367 (507)
T TIGR00910 291 AFGVLAEIASWIVGPSRGMFAAAQKGLLP--AAFAKMN-KHEVPVPLVIIQGIITSIAGAILTFGGGGNNLSFLIAIALT 367 (507)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCCcC--HHHHhhC-cCCCcHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 88999999999999999999999999999 9999999 899999999999999887543211 2345677888899
Q ss_pred HHHHHHHHHHHHHHHHhhcc-cCccCCCcccCC---chhhHHHHHHHHHHHHHHHhcCCCCCCCCCCCccchhHHHHH--
Q 010352 408 TIGWVGGYAVPIFARMVMAE-QKFNAGPFYLGK---ASRPICLIAFLWICYTCSVFLLPTFYPISWDTFNYAPVALGV-- 481 (512)
Q Consensus 408 ~~~~~~~~~l~~~~~~~~r~-~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 481 (512)
+....+.|.+..++.+++|+ +++.+||||.|. ....++.++++++++..+..++|+..+.+..+++|..+.++.
T Consensus 368 ~~~~~i~Y~l~~~a~i~lr~k~p~~~rpf~~pg~~~~~~i~~~~~~~~~~~~~v~~~~Pp~~~~~~~~~~y~~~~~~~~~ 447 (507)
T TIGR00910 368 VVIYLCAYFLFFIGYFVLILKHPDLKRTFNIPGGIGGKLIIAGIGFLLSIFAFFISFLPPANIAGDETDMYQEILLISFL 447 (507)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCCeEecCCccchhhHHHHHHHHHHHHHheeeeCCCccCCCchHHHHHHHHHHHH
Confidence 99999999998888877764 456789999972 235889999999999999999998877666777776665533
Q ss_pred -HHHHHhhhheeeccee
Q 010352 482 -GLGLIMLWWLLDARKW 497 (512)
Q Consensus 482 -~l~~~~~~~~~~~~~~ 497 (512)
+.++..++|..++||+
T Consensus 448 ~~~~~~~~~y~~~~~~~ 464 (507)
T TIGR00910 448 VTAALPFIIYALHDKKG 464 (507)
T ss_pred HHHHHHHHHHHHhcccc
Confidence 3444556665555554
No 30
>PRK11021 putative transporter; Provisional
Probab=100.00 E-value=7e-48 Score=392.82 Aligned_cols=382 Identities=18% Similarity=0.225 Sum_probs=295.6
Q ss_pred cchHHHHHHHHHHhhhhhhHHHHHHhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChhhHHHhhccCCCCC
Q 010352 21 MTLFKTFAISFSTMTLFTGIIPLYGSSLLYAGPASLVWGWVVVSFFTWFVGLAMAEICSSFPTTGSLYFWAAHLASPKWG 100 (512)
Q Consensus 21 l~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~G~~~~~~~~ii~~l~~~~~a~~~~el~~~~p~~GG~y~~~~~~~g~~~g 100 (512)
+|+++.+++.++.++| +|++..++.+.+.+||. ++++|+++++++++.+++++|+++++|++||.|.|+++. +|
T Consensus 1 ~g~~~~~~l~~g~~IG-sGif~~~g~~~~~aG~~-~~~~~~i~~~~~~~~al~~aEl~s~~P~aGG~y~y~~~~----~G 74 (410)
T PRK11021 1 LGLWQGIGLLSTSLLG-TGVFAVPALAALVAGNN-SLWAWPLLILLIFPIAIVFARLGRHFPHAGGPAHFVGMA----FG 74 (410)
T ss_pred CcHHHHHHHHHHHHHh-hHHHHhHHHHHHhcCch-HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHhHHHH----hC
Confidence 5889999999999999 99999999999999997 999999999999999999999999999999999999999 66
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccCchHHHHHHHHHHHHHHHHHHhchhhHHHHHHH
Q 010352 101 PFASWCCAWLETIGLIAGMGTQAYAGSQTLQSIILLCTGTNKDGGYFAPKWLFLCMYIGLTIIWAVLNTFALEVIAFIDI 180 (512)
Q Consensus 101 ~~~g~~~g~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~k~~~~~~~ 180 (512)
|.+||.+||.++..+....+.......++....++ .+.+....+.++++++.+.+|++|+|..+|++.
T Consensus 75 ~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~ln~~Gv~~~~~~~~ 142 (410)
T PRK11021 75 PRLGRVTGWLFLSVIPVGLPAALQIAAGFGQALFG------------WSSWQLLLAELLTLALLWLLNLRGASSSANLQT 142 (410)
T ss_pred chhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcC------------CCCchHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 66799999999987766666555555666665442 123334556667778889999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhhccccccccccccccccccCCCCCCCchhHHHHhhhhhhhhhccccccchhhhhccCcccc
Q 010352 181 ISMWWQVAGGLVIIIMLPLVALTTQSASYVFTHFEMSPEATGISSKPYAVILSFLVSQYSLYGYDSAAHLTEETKGADKT 260 (512)
Q Consensus 181 ~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~~~E~k~P~k~ 260 (512)
+++.+.+..+..+ +. .++.++.++.+++. ++.+ ..++..++...+|+|.|+|.+++++||+|||+||
T Consensus 143 ~~~~~~~~i~~~~----~~-~~~~~~~~~~~~~~----~~~~----~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~k~ 209 (410)
T PRK11021 143 VIALLIVALVVAI----WW-AGDIKPADIPFPAP----GSIE----WSGLFAALGVMFWCFVGIEAFAHLASEFKNPERD 209 (410)
T ss_pred HHHHHHHHHHHHH----HH-HcCCchhcCCCCCC----CCcc----HHHHHHHHHHHHHHHhcHHHHHhhHHhccCcccc
Confidence 8775543322211 11 11122222222211 2222 3458889999999999999999999999999999
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHhccChhhhhcCCCcccCCCcHHHHHHHHhhcccCCcchhHHHHHHHHHHHHHhHH
Q 010352 261 GPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNETAGAFVPAQILYDAFHGRYHNSTGAIILLIVIWGSFFFGGL 340 (512)
Q Consensus 261 ip~ai~~~~~~~~i~y~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 340 (512)
+||++..+..++.++|++.+.+..... ++++..++ +.+..+.+.+.+ |.. ...++.+..+.+.+++.+
T Consensus 210 iPrAi~~~~~~~~~lYil~~~~~~~~~-~~~~~~~~------~~~~~~~~~~~~----G~~-~~~ii~i~~~~s~~~~~~ 277 (410)
T PRK11021 210 FPRALMIGLLLAGLVYWACTVVVLHFP-AYGDKQAA------AASLPGIFVQLF----GGY-ALWVICVIGYLACFASVN 277 (410)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhcC-CCcchhhc------cccHHHHHHHHh----Cch-hHHHHHHHHHHHHHHHHH
Confidence 999999999999999999988876655 43333222 234434444443 443 456677778889999999
Q ss_pred HHHhhhhhhHHhhhcCCCCCcccccccccccCCchHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHH
Q 010352 341 SVTTSAARVVYALSRDKGIPFSSIWRQLHPKHKVPSNAVWLCAAICIILGLPILKVNVVFTAITSICTIGWVGGYAVPIF 420 (512)
Q Consensus 341 ~~~~~~sR~l~~ma~d~~lP~~~~f~~~~~~~~~P~~a~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~ 420 (512)
+++.+.+|++++|+|||.+| ++|+|+| |+|+|+++++++.+++.+..+.......+++.+.+..+...++.|.+.++
T Consensus 278 ~~~~~~sR~l~a~ardg~lP--~~~~k~~-~~~tP~~ail~~~~i~~~~~l~~~~~~~~~~~l~~~~~~~~li~y~~~~~ 354 (410)
T PRK11021 278 IYTQSFARLVWSQAREGRPP--SYLARLS-ARGVPVNALNAVLGCCAVSILLIYALGLNLEALIAYANGIFVLIYLLCML 354 (410)
T ss_pred HHHHHHHHHHHHHHccCCcc--HHHHhhc-cCCCcHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999 9999999 88999999999998887765432223457888999999999999999999
Q ss_pred HHHhhcccCccCCCcccCCchhhHHHHHHHHHHHHHHHh
Q 010352 421 ARMVMAEQKFNAGPFYLGKASRPICLIAFLWICYTCSVF 459 (512)
Q Consensus 421 ~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 459 (512)
+.++.|||+ + +.+++++.+.+.+++...
T Consensus 355 a~~~l~~~~--------~---~~~~~~~~~~~~~~~~~~ 382 (410)
T PRK11021 355 AACKLLKGR--------Y---RPLAVLGCLLCLLLLVML 382 (410)
T ss_pred HHHHHhccc--------h---HHHHHHHHHHHHHHHHHh
Confidence 988876542 1 345666777776665543
No 31
>KOG1286 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=2.7e-47 Score=390.04 Aligned_cols=427 Identities=18% Similarity=0.211 Sum_probs=334.2
Q ss_pred CcccccccchHHHHHHHHHHhhhhhhHHHHHHhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCC-ChhhHHHh
Q 010352 14 KQELRREMTLFKTFAISFSTMTLFTGIIPLYGSSLLYAGPASLVWGWVVVSFFTWFVGLAMAEICSSFPTT-GSLYFWAA 92 (512)
Q Consensus 14 ~~~l~r~l~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~G~~~~~~~~ii~~l~~~~~a~~~~el~~~~p~~-GG~y~~~~ 92 (512)
++++||+|+.+|+.++++|.++| +|++...+.++..+||.+.+++++++++.+++.++||+|++.++|.+ ||.|.|.+
T Consensus 25 ~~~lkR~L~~rhl~miaiGg~IG-tGl~V~sG~~l~~~gp~s~iisf~i~g~~~~~~~~~~~E~~~~~P~~aGs~~~ya~ 103 (554)
T KOG1286|consen 25 ETELKRCLKTRHLQMLAIGGTIG-TGLFVGTGSALRNGGPPSLLISFIIAGIAALLSALCLGEFAVRFPVSAGSFYTYAY 103 (554)
T ss_pred cchhhccCCcccEEEEEecceec-cceEEeccHHHhccCChhHHHHHHHHHHHHHHHHHHHHHHheecccccccceeeee
Confidence 35899999999999999999999 99999999999998888899999999999999999999999999995 99999999
Q ss_pred hccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhcCCCCCCCccCchHHHHHHHHHHHHHHHHHHhc
Q 010352 93 HLASPKWGPFASWCCAWLETIGLIAGMGTQAYAGSQTLQSIIL--LCTGTNKDGGYFAPKWLFLCMYIGLTIIWAVLNTF 170 (512)
Q Consensus 93 ~~~g~~~g~~~g~~~g~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 170 (512)
|. .|+.+||.+||.+++.|.+..++++.+.+.++++... .++. ...+.....|.... +.+...+|+.
T Consensus 104 ~~----i~e~~aF~~gWny~l~y~i~~a~e~~a~s~~~~~w~~~~~~~~--~~~~~~~~~~~~~f-----la~~v~in~~ 172 (554)
T KOG1286|consen 104 RF----VGESLAFAIGWNYLLEYVIGLAAEARAWSSYLDYWTGASLIGI--LVDTVNPGGWIPDF-----LAFILIINLF 172 (554)
T ss_pred ee----eCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhccccccc--cccCCCCCccHHHH-----HHHHHHHHHH
Confidence 99 7777899999999999999999999999999998750 0000 00011112222222 2334555666
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhhhhccc---cccccccc-cccccccCCCCCCCc-hhHHHHhhhhhhhhhcccc
Q 010352 171 ALEVIAFIDIISMWWQVAGGLVIIIMLPLVALT---TQSASYVF-THFEMSPEATGISSK-PYAVILSFLVSQYSLYGYD 245 (512)
Q Consensus 171 g~k~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~---~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~f~G~e 245 (512)
|+|..+..+......|++..+.+++.+++...+ .+..++.- +.+ . ++.++.+. +.|++.++..+.|+|.|+|
T Consensus 173 gv~~~ge~ef~~~~~kvl~~v~~~Il~iVi~~G~~~~d~~~~ig~~y~-~--~~g~F~p~gf~Gv~s~~~~~~fsf~G~e 249 (554)
T KOG1286|consen 173 GVLAYGEVEFSLAFNKILTAVGFIILAIVIIAGGGPADVKNWIGFRYW-H--DPGAFFPFGFKGVLSGAATAFFSFIGFE 249 (554)
T ss_pred HHhhccceeehHHHHHHHHHHHHHHhheeeecCCCcCCcCCCcCcccc-C--CCCCcCCCCcceeeHHHHHHHHHHhhHH
Confidence 666555555555555555555555554443211 11112222 222 2 33334333 6779999999999999999
Q ss_pred ccchhhhhccCcccccchHHHHHHHHHHHHHHHHHHHHHHhccChhh--hhcCCCcccCCCcHHHHHHHHhhcccCCcch
Q 010352 246 SAAHLTEETKGADKTGPIAILSSIGIISIFGWALILALCFSIQDFSY--LYDKSNETAGAFVPAQILYDAFHGRYHNSTG 323 (512)
Q Consensus 246 ~~~~~~~E~k~P~k~ip~ai~~~~~~~~i~y~~~~~~~~~~~~~~~~--l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 323 (512)
.++..+||+|||+|++|+|+..++.++.++|++..+.+...+ |+++ +.++ .+..+++....+.. +.+..
T Consensus 250 ~va~~a~E~kNP~k~IP~ai~~s~~ri~~~Yi~~~~~l~l~v-py~~~~L~~~-------~~~~spF~iai~~~-~~k~~ 320 (554)
T KOG1286|consen 250 LVATTAEEAKNPRKAIPKAIKQSLLRILLFYILSSIVLGLLV-PYNDPRLDPG-------AALASPFVIAIGNA-GAKYL 320 (554)
T ss_pred HHHHHHHhccCCcccccHHHHHHHHHHHHHHHHHHHHheEEe-ccCccccCCC-------CccccHHHHHHhcc-Ccccc
Confidence 999999999999999999999999999999999999999999 5554 5443 24557777666554 55556
Q ss_pred hHHHHHHHHHHHHHhHHHHHhhhhhhHHhhhcCCCCCcccccccccccCCchHHHHHHHHHHHHHHhcc-ccccHHHHHH
Q 010352 324 AIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQLHPKHKVPSNAVWLCAAICIILGLP-ILKVNVVFTA 402 (512)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~sR~l~~ma~d~~lP~~~~f~~~~~~~~~P~~a~~~~~~i~~~~~~~-~~~~~~~~~~ 402 (512)
+.+++++++++..+++|+.+++.+|.+++||+||++| |+|+++| |+++|+.+++++.+.+.+..+. .....+.|++
T Consensus 321 ~~ivna~iL~~~~s~~n~~~y~~sR~l~amA~~G~~P--k~f~~v~-~~g~P~~a~~v~~~~~~l~~~~~~~~~~~~f~~ 397 (554)
T KOG1286|consen 321 PHIVNAGILIGLLSSLNSSLYAGSRVLYALAKDGLAP--KFFARVD-RRGVPLVAVLVSGLFGALAALNFSLGAATVFNW 397 (554)
T ss_pred chhhhHHHHHHHHHHHHHHhHHhHHHHHHHHhcCCcc--hHHhhcC-CCCCchhHHHHHHHHHHHHHHHhccccchHHHH
Confidence 6699999999999999999999999999999999999 9999999 5599999999999999986653 3344578899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccC------ccCCCcccCCchhhHHHHHHHHHHHHHHHhcCCCCCCCC
Q 010352 403 ITSICTIGWVGGYAVPIFARMVMAEQK------FNAGPFYLGKASRPICLIAFLWICYTCSVFLLPTFYPIS 468 (512)
Q Consensus 403 l~~~~~~~~~~~~~l~~~~~~~~r~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (512)
++++.++..++.|..++++.+++|+.. .++.+|+.+ .++.....+..+..+......+....|..
T Consensus 398 L~~~~si~tl~~w~~i~~~~i~~R~a~~~q~~~~~~~~~~s~-~~~~gs~~~~~~~~l~~~~~~~~~~~~~~ 468 (554)
T KOG1286|consen 398 LVNLSSIGTLFAWTLVALSHLRFRYAMKVQGRSLDELPYKSP-TGPYGSYYGLLVNILILLAQFYVAFFPIG 468 (554)
T ss_pred HHHHHhHHHHHHHHHHHHHHeeeeecccccCCCcccccccCC-CCCchhHHHHHHHHHHHHHHHhccccccC
Confidence 999999999999999999999998653 334566666 67777777777777777777777665543
No 32
>PRK15238 inner membrane transporter YjeM; Provisional
Probab=100.00 E-value=9.3e-45 Score=377.88 Aligned_cols=461 Identities=15% Similarity=0.147 Sum_probs=315.7
Q ss_pred cccccccchHHHHHHHHHHhhhhhhHHHHHHhhhhcCCchhHHHHHHHHHH-HHHHHHHHHHHHHhhcCC-CChhhHHHh
Q 010352 15 QELRREMTLFKTFAISFSTMTLFTGIIPLYGSSLLYAGPASLVWGWVVVSF-FTWFVGLAMAEICSSFPT-TGSLYFWAA 92 (512)
Q Consensus 15 ~~l~r~l~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~G~~~~~~~~ii~~l-~~~~~a~~~~el~~~~p~-~GG~y~~~~ 92 (512)
+++||+++++++..++++.+++ .+ ..+.+...+|+. .++.|+++++ +.+|.+++++|+++++|+ +||.|.|++
T Consensus 3 ~~~~~~l~~~~l~~~~~~~vig-~~---~~~~~~~~~G~~-~i~~~~i~~~~~~l~~al~~aEL~s~~P~~aGG~Y~w~~ 77 (496)
T PRK15238 3 SNTKKKLSLIGLILMIFTSVFG-FA---NSPRAFYLMGYS-AIPWYILSAILFFIPFALMMAEYGSAFKDEKGGIYSWMN 77 (496)
T ss_pred CcccCeeeHHHHHHHHHHHHHh-CC---chHHHHHHcChH-HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHH
Confidence 3457899999999999999977 33 223345678888 6666666665 468999999999999997 899999999
Q ss_pred hccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcCCCCCCCc---c-CchHHHHHHHHHHHHHHHHH
Q 010352 93 HLASPKWGPFASWCCAWLETIGLIAGMGTQAYAGSQ-TLQSIILLCTGTNKDGGY---F-APKWLFLCMYIGLTIIWAVL 167 (512)
Q Consensus 93 ~~~g~~~g~~~g~~~g~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~---~-~~~~~~~~i~~~~~~~~~~~ 167 (512)
++ +||.+||+++|.+|..+............. .....+.. +.. ..+ . .+......+++..+++++.+
T Consensus 78 ~~----~G~~~gf~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~~~~a~~~~~~~t~v 149 (496)
T PRK15238 78 KS----VGPKFAFIGTFMWFASYIIWMVSTASKIWIPFSTFIFGK---DTT-QTWHFLGLNSTQVVGILAVIWMILVTFV 149 (496)
T ss_pred HH----cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc---chh-hhhhhhcccchHHHHHHHHHHHHHHHHH
Confidence 99 555568999999888776655433322111 11111110 000 000 0 11122234555666689999
Q ss_pred HhchhhHHHHHHHHHHHHHHHHHHHHHHh-hhh--hccccccccccccccccccCCCCCCCchhHHHHhhhhhhhhhccc
Q 010352 168 NTFALEVIAFIDIISMWWQVAGGLVIIIM-LPL--VALTTQSASYVFTHFEMSPEATGISSKPYAVILSFLVSQYSLYGY 244 (512)
Q Consensus 168 ~~~g~k~~~~~~~~~~~~~i~~~~~~~i~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~ 244 (512)
|.+|+|..++++++.+.+++...+++.+. .+. ..+.....+...+++... ..+++.+ +.++..++....|+|.|+
T Consensus 150 n~~g~~~~~~i~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~f~G~ 227 (496)
T PRK15238 150 ASKGINKIAKVTSIGGIAVMLLNIVLLLVSIIILILNGGHFAQPIGVSSFVTS-PNPAYQS-PIAVLSFVVFAIFAYGGI 227 (496)
T ss_pred HccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccccHhhcccC-CCCcccc-chHHHHHHHHHHHHHHhH
Confidence 99999999999999887776543322221 111 111111111211222000 1123333 356888888899999999
Q ss_pred cccchhhhhccCcccccchHHHHHHHHHHHHHHHHHHHHHHhccChhhhhcCCCcccCCCcHHHHHHHHhh----cccC-
Q 010352 245 DSAAHLTEETKGADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNETAGAFVPAQILYDAFH----GRYH- 319 (512)
Q Consensus 245 e~~~~~~~E~k~P~k~ip~ai~~~~~~~~i~y~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~----~~~g- 319 (512)
|..++.+||+|||+|++||++..+...+.++|++..+...... |+++..++++.+....+. ...+.++ ...|
T Consensus 228 e~~~~~a~E~~~p~~~~p~ai~~~~~~~~~~y~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~--~~~~~~g~~~~~~~g~ 304 (496)
T PRK15238 228 EAVGGLVDKTENPEKNFPKGIIIAAIVISIGYSLAIFLWGVST-NWQQVLSNKSVNLGNITY--VLMNNLGYTLGHALGL 304 (496)
T ss_pred HHHHHHHHhccCCCccccHHHHHHHHHHHHHHHHHHHHHHhcC-chhhcCCccccchhccHH--HHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999888777666 666665433210001110 0111111 0111
Q ss_pred --------CcchhHHHHHHHHHHHHHhHHHHHhhhhhhHHhhhcCCCCCcccccccccccCCchHHHHHHHHHHHHHHhc
Q 010352 320 --------NSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQLHPKHKVPSNAVWLCAAICIILGL 391 (512)
Q Consensus 320 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~ma~d~~lP~~~~f~~~~~~~~~P~~a~~~~~~i~~~~~~ 391 (512)
..+...++.+..+.+.+++.+++..+.+|.++++++||.+| |+|+|+| |+++|+++++++.++..++.+
T Consensus 305 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~g~~P--~~f~k~n-k~g~P~~a~~~~~~i~~l~~~ 381 (496)
T PRK15238 305 SPAASLTLGVWFARITGLSMFLAYTGAFFTLSYSPLKQLIEGTPKALWP--KKMTKLN-KNGMPANAMWLQCIIVSVFIL 381 (496)
T ss_pred chhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhCccCccc--HHHHhhC-cCCCcHHHHHHHHHHHHHHHH
Confidence 12244466788889999999999999999999999999999 9999999 999999999999988886543
Q ss_pred -cccc---cHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCccCCCcccC---CchhhHHHHHHHHHHHHHHHhcCCCC
Q 010352 392 -PILK---VNVVFTAITSICTIGWVGGYAVPIFARMVMAEQKFNAGPFYLG---KASRPICLIAFLWICYTCSVFLLPTF 464 (512)
Q Consensus 392 -~~~~---~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~r~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (512)
...+ ..+.|+.+.++++....+.|.+++.+.+++||+++.+||++.+ +++...++++++++.+..+...+++.
T Consensus 382 ~~~~~~~~~~~~f~~l~~l~~~~~li~y~~~~~a~i~~r~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 461 (496)
T PRK15238 382 LVSFGGDAASAFFNILTLMANVSMTLPYLFLAGAFPFFKKKKDIDRPFVVFKTKKSTLIATIVVVLVVGFANVFTIIQPV 461 (496)
T ss_pred HHHhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCceecCCcceehhHHHHHHHHHHHHHHHheeCCC
Confidence 2222 2345899999999999999999999999998887778888773 25666777777777776666665542
Q ss_pred CCCCCCCccchhHHHHHHHHHHhhhheeecceeee
Q 010352 465 YPISWDTFNYAPVALGVGLGLIMLWWLLDARKWFT 499 (512)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 499 (512)
..+++++.....+..+++..+.|++|++|+++
T Consensus 462 ---~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 493 (496)
T PRK15238 462 ---IEGDYQSTFWMIGGPVFFSILAWIIYQNYEKK 493 (496)
T ss_pred ---cCCCHHHHHHHHHHHHHHHHHHHHHHHhhchh
Confidence 22456666666666667777777776666554
No 33
>TIGR00930 2a30 K-Cl cotransporter.
Probab=100.00 E-value=3.8e-45 Score=398.12 Aligned_cols=422 Identities=14% Similarity=0.060 Sum_probs=323.7
Q ss_pred ccccccchHHHHHHH-HHHhhhhhhHHHHHHhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhh-cCCCChhhHHHhh
Q 010352 16 ELRREMTLFKTFAIS-FSTMTLFTGIIPLYGSSLLYAGPASLVWGWVVVSFFTWFVGLAMAEICSS-FPTTGSLYFWAAH 93 (512)
Q Consensus 16 ~l~r~l~~~~~~~~~-~~~~~~~~gi~~~~~~~~~~~G~~~~~~~~ii~~l~~~~~a~~~~el~~~-~p~~GG~y~~~~~ 93 (512)
+.+|++|+++.+.+. +++++| .++|..++..+..+|...+++.|+++++++++++++|+|+++. +|++||.|.|++|
T Consensus 73 ~~~~~lG~~~GV~~~~~~nIiG-v~iFlr~~~Vvg~aG~~~sll~~~la~~vtlltaLS~seiaTng~p~aGG~Y~yisr 151 (953)
T TIGR00930 73 AGAVKFGWVMGVLVPCLLNIWG-VILFLRLSWIVGQAGIGLSLLIILLCCCVTTITGLSMSAIATNGVVKGGGAYYLISR 151 (953)
T ss_pred CCCcccceeEeeeHhhhHhHhe-eeeeeeHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHH
Confidence 456799999999998 999998 9999999999999997768999999999999999999999998 9999999999999
Q ss_pred ccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCc-cCchHHHHHHHHHHHHHHHHHHhchh
Q 010352 94 LASPKWGPFASWCCAWLETIGLIAGMGTQAYAGSQTLQSIILLCTGTNKDGGY-FAPKWLFLCMYIGLTIIWAVLNTFAL 172 (512)
Q Consensus 94 ~~g~~~g~~~g~~~g~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~~~g~ 172 (512)
+ +||..|+.+||.+++++.+..+.++.++++++..+++... ... ..+.....+++++++++++++|++|+
T Consensus 152 a----lGp~~Gf~iG~~~~la~~va~A~~~~Gf~eyl~~lf~~~~-----~~~~~~~~~~~~iia~i~l~ll~~In~~Gv 222 (953)
T TIGR00930 152 S----LGPEFGGSIGLIFAFANAVAVAMYVVGFAETVLDLLRENG-----SKIMVDPINDIRIYGTVTVVVLLGISFAGM 222 (953)
T ss_pred H----hCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-----cccccCccccchHHHHHHHHHHHHHHHhhH
Confidence 9 6666699999999999999999999999999999875311 001 11112235677788889999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccc---cccccccccccCCCCCCCchhHHHHhhhhhhhhhccccccch
Q 010352 173 EVIAFIDIISMWWQVAGGLVIIIMLPLVALTTQSA---SYVFTHFEMSPEATGISSKPYAVILSFLVSQYSLYGYDSAAH 249 (512)
Q Consensus 173 k~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~ 249 (512)
|..+|+|.++++++++.++.+++.++....+.... .+..+.+.. ...+++++...++...+...+++|+|+|+.++
T Consensus 223 k~~ak~q~vl~vi~ll~ll~~iig~~~~~~~~~~~g~~~~~~~~f~~-n~~p~~~~~~~~f~~~~ai~F~A~tGi~agan 301 (953)
T TIGR00930 223 EWENKAQVLFLVIVLLSILNIFVGTIIPAFDKPAKGFFGLGNEIFSE-NFIPGIPGPEGGFFSLFGIFFPSVTGILAGAN 301 (953)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHheeeecCCCCCccceeeccchhhhh-ccCCCCCCcccHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998888877665432211110 111111100 01122333223377777778889999999999
Q ss_pred hhhhccCcccccchHHHHHHHHHHHHHHHHHHHHHHhccChhhhhcCCCcccC---CC---------cHHHHH---HHHh
Q 010352 250 LTEETKGADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNETAG---AF---------VPAQIL---YDAF 314 (512)
Q Consensus 250 ~~~E~k~P~k~ip~ai~~~~~~~~i~y~~~~~~~~~~~~~~~~l~~~~~~~~~---~~---------~~~~~~---~~~~ 314 (512)
++||+|||+|++|||++.++.++.++|++.++...... +.+...+.++.... +. |....+ ....
T Consensus 302 ~sgElKnP~r~IPratl~ai~i~~vlYllv~~~~~~~~-~~d~~~~~~~~l~~~~~g~~~f~~~~~~p~~~gL~~~~~~~ 380 (953)
T TIGR00930 302 ISGDLKDPQKAIPKGTLLAILTTTVVYLGSVVLFGACV-VRDATGDKNDTLVTNCTSAACFSECAHNTCSYGLMNNLQVM 380 (953)
T ss_pred HHHhccChhhhhHHHHHHHHHHHHHHHHHHHHHHHccc-cHhhhcccchhhhcccccchhhhhhcccchhhhhcchHHHH
Confidence 99999999999999999999999999999998777666 43322111100000 00 000000 0111
Q ss_pred hcccCCcchhHHHHHHHHHHHHHhHHHHHhhhhhhHHhhhcCCCCCcccccccccccCCchHHHHHHHHHHHHHHhcccc
Q 010352 315 HGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQLHPKHKVPSNAVWLCAAICIILGLPIL 394 (512)
Q Consensus 315 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~ma~d~~lP~~~~f~~~~~~~~~P~~a~~~~~~i~~~~~~~~~ 394 (512)
.. ... ...++.++.+++++++.++++.+++|++++|||||.+|+.++|+|+|+|+++|++|++++++++.+++++
T Consensus 381 ~~--~~~-~~~lI~ig~~~stlss~la~l~~asRvl~AmArDg~lP~l~~fakv~~k~~tP~~Alllt~iIa~l~ili-- 455 (953)
T TIGR00930 381 SL--VSP-FPPLITAGIFSATLSSALASLVSAPRLFQALCKDNIYPFLQFFGKGYGKNGEPLRAYLLTAFIAEGFILI-- 455 (953)
T ss_pred hh--hhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhhcccCCCCCCcHHHHHHHHHHHHHHHHH--
Confidence 11 111 4578888999999999999999999999999999999988899999999999999999999999987763
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccC-ccCCC-cccCCchhhHHHHHHHHHHHHHHHh
Q 010352 395 KVNVVFTAITSICTIGWVGGYAVPIFARMVMAEQK-FNAGP-FYLGKASRPICLIAFLWICYTCSVF 459 (512)
Q Consensus 395 ~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~r~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 459 (512)
.+++.+..+.+...++.|.+.+++.++.|.++ ...|| ||. +.+.+++++.+.++++++..
T Consensus 456 ---~~l~~ia~lis~~fLl~Y~lvnla~~~l~~~~~p~~RP~fk~--~~~~~sllG~l~c~~lmf~i 517 (953)
T TIGR00930 456 ---AELNTIAPIISNFFLASYALINFSCFHASLLRSPGWRPRFKY--YHWWLSLLGASLCCAIMFLI 517 (953)
T ss_pred ---HhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCcccc--chHHHHHHHHHHHHHHHHHH
Confidence 36788999999999999999999988876332 22244 443 67788999999998888775
No 34
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A ....
Probab=100.00 E-value=1.1e-44 Score=372.30 Aligned_cols=414 Identities=24% Similarity=0.382 Sum_probs=329.6
Q ss_pred cchHHHHHHHHHHhhhhhhHHHHHHhhhhcCCchhHHHHHHHHHHHH-HHHHHHHHHHHhhcCCCChhhHHHhhccCCCC
Q 010352 21 MTLFKTFAISFSTMTLFTGIIPLYGSSLLYAGPASLVWGWVVVSFFT-WFVGLAMAEICSSFPTTGSLYFWAAHLASPKW 99 (512)
Q Consensus 21 l~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~G~~~~~~~~ii~~l~~-~~~a~~~~el~~~~p~~GG~y~~~~~~~g~~~ 99 (512)
+|+++.++++++.+.| +|++..+ ..+.+|+. .+++|+++.++. ++.+++|+|+++++|++||.|.|+++. +
T Consensus 1 l~~~~~~~l~~~~~~g-~gi~~~~--~~~~~G~~-~~~~~~i~~~~~~l~~a~~~~el~~~~p~~GG~y~~~~~~----~ 72 (426)
T PF13520_consen 1 LGLFSAIALVIGSIIG-SGIFFSP--AAASAGPS-AILAWIIAALLFFLPIALSYAELSSAYPSAGGIYVWVSRA----F 72 (426)
T ss_dssp B-HHHHHHHHHHCHHT-TTTTTHH--HHTCTGCH-HHHHHHHHHHHHHHHHHHHHHHHHTTTTSSTTHHHHHHHH----H
T ss_pred CCHHHHHHHHHHHHHH-HHHHHHH--HHHHHhHH-HHHHHHHHHHHHHHHHHHHHHHHhccCCCcCeeeehhhhc----c
Confidence 5889999999999998 8877766 66678998 898999988887 899999999999999999999999999 7
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccCchHHHHHHHHHHHHHHHHHHhchhhHHHHHH
Q 010352 100 GPFASWCCAWLETIGLIAGMGTQAYAGSQTLQSIILLCTGTNKDGGYFAPKWLFLCMYIGLTIIWAVLNTFALEVIAFID 179 (512)
Q Consensus 100 g~~~g~~~g~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~k~~~~~~ 179 (512)
||.+|++++|.+++.+....+..+....+++.+.++. ++.++++...+++++++++.+.+|++|.|..+|++
T Consensus 73 g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~i~~~~~~~~~~l~~~g~~~~~~~~ 144 (426)
T PF13520_consen 73 GPFWGFIVGWLYWVAYILSLASVASSFASYLLSLFGP--------DLNPSPWPQFLIAIILILLFTLLNLLGIKLSGKIQ 144 (426)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTG--------GGTCSHHHHHHHHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred cccchhcccceeEEEeeccccccccchhhhhhhcccc--------ccccccchheeeeecccccceEeeechhhhhhhhh
Confidence 7888999999999999999988888888888776532 34445778888899999999999999999999999
Q ss_pred HHHHHHHH-HHHHHHHHhhhhhcccccccc--ccccccccccCCCCCCCchhHHHHhhhhhhhhhccccccchhhhhccC
Q 010352 180 IISMWWQV-AGGLVIIIMLPLVALTTQSAS--YVFTHFEMSPEATGISSKPYAVILSFLVSQYSLYGYDSAAHLTEETKG 256 (512)
Q Consensus 180 ~~~~~~~i-~~~~~~~i~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~~~E~k~ 256 (512)
++.+.+++ ..++++++.++.....+.... ...++. .+++++. ++.++...+|+|.|+|++++++||.||
T Consensus 145 ~~~~~~~i~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~----~~~~~~~~~~~~~G~e~~~~~~~E~k~ 216 (426)
T PF13520_consen 145 NILTVIKIVIPLLVLIILGIVSFSFSGFNSLSFSLSTF----FPSGWPG----FLAGFSVAFFAFSGFEAIASLAEENKN 216 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSTTCCHHH----SHSCS----SCSSSSH----HHHHHHHHGGGGTTTTHHHHGGGGSSS
T ss_pred hhhhhhhhhhhhhhheeEEEeeeccccccccccccccc----CCccccc----hhhHHHHHHhhcccccccccccccccc
Confidence 99999999 566676666666543221110 111122 3334443 788899999999999999999999877
Q ss_pred cccccchHHHHHHHHHHHHHHHHHHHHHHhccChhhhhcCCCcccCCCcHHHHHHHHhhcccCCcchhHHHHHHHHHHHH
Q 010352 257 ADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNETAGAFVPAQILYDAFHGRYHNSTGAIILLIVIWGSFF 336 (512)
Q Consensus 257 P~k~ip~ai~~~~~~~~i~y~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 336 (512)
||+||++..+.+++.++|++.+++..... |.++....++ ..++.....+.. +.++...++.+..+++.+
T Consensus 217 --k~ip~ai~~~~~~~~i~y~l~~~~~~~~~-~~~~~~~~~~-------~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~ 285 (426)
T PF13520_consen 217 --KTIPRAIIISIIIVAIIYILFSIALLGAL-PDDELANSSN-------SPSPFAVLASAV-GGSWLAIIVSIAAILSLF 285 (426)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHTTS-THCHHHTTTC-------HHCHHHHHHHHH-HCCTHHHHHHHHHHHHHH
T ss_pred --hhheeecccchhHHHHHHhhhhheeeecc-cchhhhcccc-------cccccchhhccc-cccccccccccccccccc
Confidence 89999999999999999999999999999 6676654432 112233333333 444688999999999999
Q ss_pred HhHHHHHhhhhhhHHhhhcCCCCCcccccccccccCCchHHHHHHHHHHHHHHhccc-cccHHHHHHHHHHHHHHHHHHH
Q 010352 337 FGGLSVTTSAARVVYALSRDKGIPFSSIWRQLHPKHKVPSNAVWLCAAICIILGLPI-LKVNVVFTAITSICTIGWVGGY 415 (512)
Q Consensus 337 ~~~~~~~~~~sR~l~~ma~d~~lP~~~~f~~~~~~~~~P~~a~~~~~~i~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~ 415 (512)
++.++.+.+.+|++++|+|||.+| ++|+|+| |+++|++++++..+++.++.+.. ..+.++++.+.+..++...+.|
T Consensus 286 ~~~~~~~~~~sR~l~~~a~d~~lP--~~~~~~~-k~~~P~~a~~~~~~i~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 362 (426)
T PF13520_consen 286 GSINAFIFGASRLLYAMARDGVLP--KWFAKVN-KFGTPYNAIILVAVISSILLLLFLFIPQSSFDILVSLSSVGYLISY 362 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSSS--GGGGTTS-SSSSCHHHHHHHHHHHHHHHHHTTTSSSSHHHHHHHHHHHHTHHHH
T ss_pred cccchhhcchhhcccccccccchh--hhhhhcc-ccCCceeeehhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999 9999999 99999999999999997654322 2235688999999999999999
Q ss_pred HHHHHHHHhhcccCccCCCcccCCchhhHHHHHHHHHHHHHHHhcCCCCCCCCCCCccch
Q 010352 416 AVPIFARMVMAEQKFNAGPFYLGKASRPICLIAFLWICYTCSVFLLPTFYPISWDTFNYA 475 (512)
Q Consensus 416 ~l~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (512)
.+.+++.++.|+|++++++ .+ ..++..+++.+...+..+..+++...+...+..++.
T Consensus 363 ~~~~~~~~~~~~~~~~~~r--~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 419 (426)
T PF13520_consen 363 ILVILAVLFLRRKRPDLKR--IP-YRPPVGIIGIIIILFVIIASFFPLINPATWASLIYA 419 (426)
T ss_dssp HHHHHHHHHTHHHSCSSGH---H-HHHHHHHHHHHHHHHHHHHCCCHHSHCCCC-HCCHH
T ss_pred HHHHHHHHHHhhhcCCcCC--CC-cchHHHHHHHHHHHHHHHHHHHhccccchhhhhhEE
Confidence 9999888888766433221 12 336778888888888888887775555544444443
No 35
>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=1.3e-42 Score=361.52 Aligned_cols=395 Identities=23% Similarity=0.318 Sum_probs=320.8
Q ss_pred cCCCcccccccchHH-HHHHHHHHhhhhhhHHHHHHhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChhhH
Q 010352 11 LGYKQELRREMTLFK-TFAISFSTMTLFTGIIPLYGSSLLYAGPASLVWGWVVVSFFTWFVGLAMAEICSSFPTTGSLYF 89 (512)
Q Consensus 11 ~~~~~~l~r~l~~~~-~~~~~~~~~~~~~gi~~~~~~~~~~~G~~~~~~~~ii~~l~~~~~a~~~~el~~~~p~~GG~y~ 89 (512)
..++++++|+++.++ ...+.++.+.+ .|++...+.....+ +. ..++|++++++..+.+++++|+++.+|++||.|.
T Consensus 4 ~~~~~~~~~~l~~~~~~~~~~~~~~~~-~gif~~~~~~~~~~-~~-~~~~~li~~~~~~~~a~~~~el~~~~p~~GG~y~ 80 (466)
T COG0531 4 SMMSSELKKKLGLFDLLTALGVGSMIG-SGIFALPGSAAGLA-PA-AILAWLIAGIIILFLALSYAELSSAIPSAGGAYA 80 (466)
T ss_pred cccchhcCCCcchHHHHHHHHHHhhHh-hhhHhhhhhHHHhc-hH-HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCeee
Confidence 344567789999999 99999999988 88888887776655 44 5555999999999999999999999999999999
Q ss_pred HHhhccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccCchHHHHHHHHHHHHHHHHHHh
Q 010352 90 WAAHLASPKWGPFASWCCAWLETIGLIAGMGTQAYAGSQTLQSIILLCTGTNKDGGYFAPKWLFLCMYIGLTIIWAVLNT 169 (512)
Q Consensus 90 ~~~~~~g~~~g~~~g~~~g~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 169 (512)
|+++.+| +..++.++|.+++.+....+.......+++..+++... ....+.+....++.+++++.+.+|+
T Consensus 81 ~~~~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~ln~ 150 (466)
T COG0531 81 YAKRALG----PRLGFLAGWLYLLAYVIALAAIAIGAASYLSYLFPGPG------LLSIGPLLIILIALALIALLTLLNL 150 (466)
T ss_pred ehhhhcC----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcch------hhcCCchHHHHHHHHHHHHHHHHHH
Confidence 9999955 44589999999999999999999999998887764200 1222227888899999999999999
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccccccccccccCCCCCCCchhHHHHhhhhhhhhhccccccch
Q 010352 170 FALEVIAFIDIISMWWQVAGGLVIIIMLPLVALTTQSASYVFTHFEMSPEATGISSKPYAVILSFLVSQYSLYGYDSAAH 249 (512)
Q Consensus 170 ~g~k~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~ 249 (512)
+|+|..++++.+.+.++++.++++++..+.......... ..+. +. ......++..++...+|+|.|+|.+++
T Consensus 151 ~G~~~~~~~~~~~~~~~i~~~i~~~i~~~~~~~~~~~~~--~~~~----~~--~~~~~~~~~~~~~~~~~~f~G~e~~~~ 222 (466)
T COG0531 151 RGIKASAKINSIITILKIIILLIFIILGLFAFGFSNGNL--FAPF----NP--GGGSFGGILAAILLAFFAFTGFEAIAT 222 (466)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccc--CCCc----cc--ccchHHHHHHHHHHHHHHhhcHHHHHH
Confidence 999999999999999999999999999887754332111 1111 11 111234688999999999999999999
Q ss_pred hhhhccCcccccchHHHHHHHHHHHHHHHHHHHHHHhccChhhhhcCCCcccCCCcHHHHHHHHhhcccCCcchhHHHHH
Q 010352 250 LTEETKGADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNETAGAFVPAQILYDAFHGRYHNSTGAIILLI 329 (512)
Q Consensus 250 ~~~E~k~P~k~ip~ai~~~~~~~~i~y~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 329 (512)
++||+|||+|++||++..+.+.+.++|++.+.+..... +.+++... .. ..|....... . +..+...++.+
T Consensus 223 ~a~E~knp~r~ip~aii~~~~~~~~~y~~~~~~~~~~~-~~~~~~~~-~~---~~p~~~~~~~----~-~g~~~~~~i~~ 292 (466)
T COG0531 223 LAEEVKNPKRTIPRAIILSLLIVLILYILGALVIVGVL-PAGDLAAS-AP---SAPLALAALF----G-GGNWGAIIIAI 292 (466)
T ss_pred HHHHhcCccccccHHHHHHHHHHHHHHHHHHHHHHhCc-cHHHHhcc-CC---CccHHHHHHH----c-CccHHHHHHHH
Confidence 99999999999999999999999999999999999998 66555443 20 1343333322 2 22458889999
Q ss_pred HHHHHHHHhHHHHHhhhhhhHHhhhcCCCCCcccccccccccCCchHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHH
Q 010352 330 VIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQLHPKHKVPSNAVWLCAAICIILGLPILKVNVVFTAITSICTI 409 (512)
Q Consensus 330 ~~~~~~~~~~~~~~~~~sR~l~~ma~d~~lP~~~~f~~~~~~~~~P~~a~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~ 409 (512)
..+.+++++.+++..+.+|.+++|+|||.+| ++|+|+|+|+++|+++++++.+++..+.+........++.+.++++.
T Consensus 293 ~~~~~~~~~~~~~~~~~sR~~~~~ardg~lP--~~~~~~~~~~~~P~~a~~~~~ii~~~l~~~~~~~~~~~~~l~~~~~~ 370 (466)
T COG0531 293 LALLSLFGSLLAWILAVSRVLYAMARDGLLP--KFFAKVNPKGRTPVIALILTGIISLILLLLFPLSSIAFNALVSLASV 370 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc--HHHHHhCCCCCCCHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 9999999999999999999999999999999 99999998889999999999999993222221114578999999999
Q ss_pred HHHHHHHHHHHHHHhhccc-CccCCCcccC
Q 010352 410 GWVGGYAVPIFARMVMAEQ-KFNAGPFYLG 438 (512)
Q Consensus 410 ~~~~~~~l~~~~~~~~r~~-~~~~~~~~~~ 438 (512)
...+.|.+...+..+.|+| ++++|++|.+
T Consensus 371 ~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~ 400 (466)
T COG0531 371 AFLIAYLLVALALLVLRRKKPDLKRPFRLP 400 (466)
T ss_pred HHHHHHHHHHHHHHHHhhcCCCCCCccccc
Confidence 9999999999999888766 4566778877
No 36
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [], [], []. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. This domain is found in a wide variety of permeases, as well as several hypothetical proteins. ; GO: 0006810 transport, 0055085 transmembrane transport, 0016020 membrane
Probab=100.00 E-value=3.4e-44 Score=373.03 Aligned_cols=414 Identities=22% Similarity=0.278 Sum_probs=320.2
Q ss_pred HHHHHHHhhhhhhHHHHHHhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChhhHHHhhccCCCCCchhHHH
Q 010352 27 FAISFSTMTLFTGIIPLYGSSLLYAGPASLVWGWVVVSFFTWFVGLAMAEICSSFPTTGSLYFWAAHLASPKWGPFASWC 106 (512)
Q Consensus 27 ~~~~~~~~~~~~gi~~~~~~~~~~~G~~~~~~~~ii~~l~~~~~a~~~~el~~~~p~~GG~y~~~~~~~g~~~g~~~g~~ 106 (512)
..++++.++| .|++...+.....+|+.+.+++++++++++++.+++++|+++++|++||.|.|++|.+ ||..|+.
T Consensus 3 ~~~~ig~~ig-~g~f~~~g~~~~~~G~~~~~la~li~~i~~~~~~~~~~ems~~~p~~Gg~y~y~~~~l----g~~~Gf~ 77 (478)
T PF00324_consen 3 FMISIGGIIG-TGLFLGSGFAIAAAGPGGAPLAYLIAGIIVLLVALSLAEMSRRFPSAGGFYAYASRGL----GPALGFA 77 (478)
T ss_pred EEeeHHHHHH-HHHHHHHHHHHHhcccccchhHhHHHHHHHHhhhhhhhhhhhhhccccchhhhhhhcc----CCcCCce
Confidence 3467888888 9999999999999999668999999999999999999999999999999999999994 5555889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccCchHHH-HHHHHHHHHHHHHHHhchhhHHHHHHHHHHHH
Q 010352 107 CAWLETIGLIAGMGTQAYAGSQTLQSIILLCTGTNKDGGYFAPKWLF-LCMYIGLTIIWAVLNTFALEVIAFIDIISMWW 185 (512)
Q Consensus 107 ~g~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~~~g~k~~~~~~~~~~~~ 185 (512)
+||.+|+.+....+.+....+.+++..-.. .+.. ..+.+ .++..++.++++.+|++|+|..++++.++..+
T Consensus 78 ~gw~y~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~-~~~~~~~~~~~i~~~~~~~l~~~gv~~~~~~~~~~~~i 149 (478)
T PF00324_consen 78 AGWAYWLSYIAAIAAEATAAGSFLQFWGYF-------PGLP-STWVWGILIAIIFILLITLLNLFGVRVSGKIEFILTII 149 (478)
T ss_pred eeHHHHHHHHHHHHhhhhhhhhhhcccccc-------cccc-ccccccchhhhhhhhhhhhhhhhhhhccchHHHHHHHH
Confidence 999999999999999988877777654110 1111 11211 14456777788999999999999999999999
Q ss_pred HHHHHHHHHHhh-hhhccccccccc-------cccccccccCCCC-CCCchhHHHHhhhhhhhhhccccccchhhhhccC
Q 010352 186 QVAGGLVIIIML-PLVALTTQSASY-------VFTHFEMSPEATG-ISSKPYAVILSFLVSQYSLYGYDSAAHLTEETKG 256 (512)
Q Consensus 186 ~i~~~~~~~i~~-~~~~~~~~~~~~-------~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~f~G~e~~~~~~~E~k~ 256 (512)
|++.++.+++.+ +....++++.+. .+++. .+|...+ -.....+++.++..++++|.|+|+++..+||+||
T Consensus 150 ~~~~li~~ii~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~a~~a~E~k~ 228 (478)
T PF00324_consen 150 KLIALIAFIIVGVIILFFGGGPSNGRYWGDPGSFANN-FPPGFTDPSGGGFSGFFAALVFAFFAFVGFESIAILAEEAKN 228 (478)
T ss_pred hhhHhhhhhhhcccccccccCCCcccccccccccccc-cccccccccccchhHHHHhhhhhhcccccccccccccccCCC
Confidence 999999988888 322222221111 01111 1001000 0112567999999999999999999999999999
Q ss_pred cccccchHHHHHHHHHHHHHHHHHHHHHHhccChhhhhcCCCcccCCCcHHHHHHHHhhcccCCcchhHHHHHHHHHHHH
Q 010352 257 ADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNETAGAFVPAQILYDAFHGRYHNSTGAIILLIVIWGSFF 336 (512)
Q Consensus 257 P~k~ip~ai~~~~~~~~i~y~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 336 (512)
|+|++|||+..+++.+.++|++..++....+ ++++....++ . ...+++....... +.++...++.++.+.+++
T Consensus 229 P~k~IPra~~~~~~~~~v~y~~~~~~~~~~~-~~~~~~~~~~----~-~~~sp~~~~~~~~-~~~~~~~i~~~~~l~s~~ 301 (478)
T PF00324_consen 229 PRKTIPRATLLSVLRIGVFYVLTSYALTLAV-PYDNLGLTAA----S-NSASPFVIAAQYS-GGPWLAWIVNAGILISAF 301 (478)
T ss_pred chhhhhhHhhhhhhhhhhhhhhhhhhccccc-Cccchhhccc----c-ccccchhhhhhhc-ccccccceecccchhhhh
Confidence 9999999999999999999999999999888 5555433321 1 1113455555444 777788999999999999
Q ss_pred HhHHHHHhhhhhhHHhhhcCCCCCcccccccccccCCchHHHHHHHHHHHHHHhccc-cccHHHHHHHHHHHHHHHHHHH
Q 010352 337 FGGLSVTTSAARVVYALSRDKGIPFSSIWRQLHPKHKVPSNAVWLCAAICIILGLPI-LKVNVVFTAITSICTIGWVGGY 415 (512)
Q Consensus 337 ~~~~~~~~~~sR~l~~ma~d~~lP~~~~f~~~~~~~~~P~~a~~~~~~i~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~ 415 (512)
++.++.++..||++++|+|||.+| +++.++|+|+|+|++|++++.+++.+..+.. ....+.++.+.+..+...+..|
T Consensus 302 s~~~~~~~~~sR~l~ama~dg~lP--~~~~~~~~k~~~P~~Ai~~~~~i~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~ 379 (478)
T PF00324_consen 302 SSANASLYAASRLLYAMARDGLLP--KKFFARHPKNGVPYVAILVSSIISLLVLLLGSFSPGIVFNWLLNISTISNLIVY 379 (478)
T ss_pred hhhhhhhcccceeehhhhhhhhhh--hhhhhhhhcCCceEEEEeeehhchheeeeeccchhhHHHHHHhhhhhhhhhhHH
Confidence 999999999999999999999999 9999999999999999999999998876532 2233578889999999999999
Q ss_pred HHHHHHHHhhcccCc------cCCCcccCCchhhHHHHHHHHHHHHHHHhcCCCC
Q 010352 416 AVPIFARMVMAEQKF------NAGPFYLGKASRPICLIAFLWICYTCSVFLLPTF 464 (512)
Q Consensus 416 ~l~~~~~~~~r~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (512)
.+.+++.+++|++.+ ++.+++.+ ..+...+.++.......+...+...
T Consensus 380 ~~~~~s~~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~i~~~~~~~ 433 (478)
T PF00324_consen 380 ILINISYIRFRKKFKYRGRSISELPFKSP-FGPMFAILGIAALIIILIFLGFYPF 433 (478)
T ss_pred HhhhhhhhhhhhhhccccccccccChhhh-hhHHhHHHHHHHHHHHhhhhhhccc
Confidence 999999998876521 12366666 6777777776666666665555543
No 37
>TIGR00837 araaP aromatic amino acid transport protein. aromatic amino acid transporters and includes the tyrosine permease, TyrP, of E. coli, and the tryptophan transporters TnaB and Mtr of E. coli.
Probab=99.96 E-value=1e-27 Score=242.45 Aligned_cols=374 Identities=14% Similarity=0.054 Sum_probs=269.2
Q ss_pred HHHHHHhhhhhhHHHHHHhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChhhHHHhhccCCCCCchhHHHH
Q 010352 28 AISFSTMTLFTGIIPLYGSSLLYAGPASLVWGWVVVSFFTWFVGLAMAEICSSFPTTGSLYFWAAHLASPKWGPFASWCC 107 (512)
Q Consensus 28 ~~~~~~~~~~~gi~~~~~~~~~~~G~~~~~~~~ii~~l~~~~~a~~~~el~~~~p~~GG~y~~~~~~~g~~~g~~~g~~~ 107 (512)
.+.+++++| +|++..+......+++. .+...+++++.+...+++++|+++++|++||.|.|.++. +||..+++.
T Consensus 4 ~lv~gt~IG-aGIl~lP~~~a~~g~~~-~~~~~i~~~~~~~~~~l~~~el~~~~p~~~~~~~~~~~~----~G~~~g~~~ 77 (381)
T TIGR00837 4 LIIAGTTIG-AGMLALPTSTAGAWFIW-TLLLLILLWFLMLHSGLLLLEVYLTYPGGASFNTIAKDL----LGKTGNIIA 77 (381)
T ss_pred EEeehhhHh-HHHHHHHHHHHhhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHH----hCHHHHHHH
Confidence 456788899 99999998766555554 677778899999999999999999999999999999999 777789999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccCchHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHH
Q 010352 108 AWLETIGLIAGMGTQAYAGSQTLQSIILLCTGTNKDGGYFAPKWLFLCMYIGLTIIWAVLNTFALEVIAFIDIISMWWQV 187 (512)
Q Consensus 108 g~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~k~~~~~~~~~~~~~i 187 (512)
+|.+++.......++....++++..+++... ... +......+++.+++..++++|.|..+|++.+++..++
T Consensus 78 ~~~~~~~~~~~~~ay~~~~~~~l~~~~~~~~------~~~---~~~~~~~~~~~~v~~~l~~~G~~~~~~v~~i~~~~~l 148 (381)
T TIGR00837 78 GLSLLFVLYILTYAYISGGGSILSRLIGEYF------GFP---WSARAIVLIFTVLFGSFVWLSTSAVDRITRVLIFGKI 148 (381)
T ss_pred HHHHHHHHHHHHHHHHHccHHHHHHHHHHhc------CCC---ccHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHH
Confidence 9999998888888888888888888775321 111 1223445566677889999999999999999999999
Q ss_pred HHHHHHHHhhhhhccccccccccccccccccCCCCCCCchhHHHHhhhhhhhhhcccc-ccchhhhhccCcccccchHHH
Q 010352 188 AGGLVIIIMLPLVALTTQSASYVFTHFEMSPEATGISSKPYAVILSFLVSQYSLYGYD-SAAHLTEETKGADKTGPIAIL 266 (512)
Q Consensus 188 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e-~~~~~~~E~k~P~k~ip~ai~ 266 (512)
..++++.+.++.+.. . +++ . |...+ +....++..++...+++| |+| ..+...+|.||++|++||++.
T Consensus 149 ~~l~~~ii~~~~~~~---~-----~~~-~-~~~~~-~~~~~~~~~a~~~~~~~f-g~~~~i~~~~~~~~~~~k~i~raii 216 (381)
T TIGR00837 149 IAFALVFSGLLPHVK---G-----DLL-L-DVALD-TSYWPYILSALPVCLTSF-GFHGNVPSLYKYYDGNVKKVKKSIL 216 (381)
T ss_pred HHHHHHHHHHHhhcc---H-----HHH-h-cCccc-cccHHHHHHHHHHHHHHH-HcccccHHHHHHhccCHHHHHHHHH
Confidence 888877776654421 1 111 1 01000 111234777888888888 665 588889999877999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhccChhhhhcCCCcccCCCcHHHHHHHHhhcccCCcchhHHHHHHHHHHHHHhHHHHHhhh
Q 010352 267 SSIGIISIFGWALILALCFSIQDFSYLYDKSNETAGAFVPAQILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSA 346 (512)
Q Consensus 267 ~~~~~~~i~y~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (512)
.+..++.++|++...+..... +.+++.+..+. +.+. ..+...+....|.++...++.+...++..++.+++..+.
T Consensus 217 ~g~~i~~~lY~l~~~~~~g~~-~~~~l~~~~~~---~~~~-~~l~~~~~~~~~~~~~~~~v~~~~~~al~tS~~g~~l~~ 291 (381)
T TIGR00837 217 IGSAIALVLYILWQLATMGNL-PRSEFLPIIAK---GGNL-DGLVNALQGVLKSSAIELALELFSNFALASSFLGVTLGL 291 (381)
T ss_pred HHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHc---CCCh-HHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999 77777532210 1111 233333443346666788889999999999999998888
Q ss_pred hhhHHhhhcCCCCCcccccccccccCCchHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 010352 347 ARVVYALSRDKGIPFSSIWRQLHPKHKVPSNAVWLCAAICIILGLPILKVNVVFTAITSICTIGWVGGYAVPIFARMVMA 426 (512)
Q Consensus 347 sR~l~~ma~d~~lP~~~~f~~~~~~~~~P~~a~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~r 426 (512)
++.+. +.|++.+++++ |..+.+++.+...++.... +...+..+.........+...++.+..++.|
T Consensus 292 ~d~l~-----------~~~~~~~~~~~-~~~~~~~~~~~pl~~a~~~--p~~~~~~l~~~G~~~~~~~~~~p~l~~~~~r 357 (381)
T TIGR00837 292 FDYLA-----------DLFKFDDSKKG-RFKTGLLTFLPPLVFALFY--PEGFLYAIGYAGLAATIWAVIIPALLAWKAR 357 (381)
T ss_pred HHHHH-----------HHhCCCcccCC-CchhhhhhHHhHHHHHHHh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 75544 34444343333 6677788888877776532 2223355555565555556666777777766
Q ss_pred ccCccCCCcccCCchhhHHHHHH
Q 010352 427 EQKFNAGPFYLGKASRPICLIAF 449 (512)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~~~~~ 449 (512)
||++ +.+||.| .++....+..
T Consensus 358 ~~~~-~~~~~~~-~~~~~~~~~~ 378 (381)
T TIGR00837 358 KKFP-NAGYRVW-GGNKLLLLVL 378 (381)
T ss_pred hcCC-CCCcccc-CChHHHHHHH
Confidence 6533 3589999 7777655443
No 38
>KOG2082 consensus K+/Cl- cotransporter KCC1 and related transporters [Inorganic ion transport and metabolism]
Probab=99.95 E-value=3.2e-25 Score=221.86 Aligned_cols=417 Identities=14% Similarity=0.067 Sum_probs=282.0
Q ss_pred hHHHHHHhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhc----CCCChhhHHHhhccCCCCCchhHHHHHHHHHHH
Q 010352 39 GIIPLYGSSLLYAGPASLVWGWVVVSFFTWFVGLAMAEICSSF----PTTGSLYFWAAHLASPKWGPFASWCCAWLETIG 114 (512)
Q Consensus 39 gi~~~~~~~~~~~G~~~~~~~~ii~~l~~~~~a~~~~el~~~~----p~~GG~y~~~~~~~g~~~g~~~g~~~g~~~~~~ 114 (512)
-+|.-....+..+| +..++++..+++.|+.++-..+++.- -.+||.|..++|.+|+++|. .+|.++.++
T Consensus 132 ilFiRLtWvVG~AG---v~q~fllv~iCC~cTmLTaISmSAIATNGVVpaGGsYfmISRsLGPEFGg----AVGlcFYLg 204 (1075)
T KOG2082|consen 132 ILFIRLTWVVGMAG---VGQGFLLVFICCLCTMLTAISMSAIATNGVVPAGGSYFMISRSLGPEFGG----AVGLCFYLG 204 (1075)
T ss_pred HHHHHHHHHhhhhH---HHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCeeEEEecccCccccc----eeeehhhhh
Confidence 33444444554444 44555555555555555555544432 24899999999998888865 889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcc----CchHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHH
Q 010352 115 LIAGMGTQAYAGSQTLQSIILLCTGTNKDGGYF----APKWLFLCMYIGLTIIWAVLNTFALEVIAFIDIISMWWQVAGG 190 (512)
Q Consensus 115 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~i~~~~~~~~~~~~~~g~k~~~~~~~~~~~~~i~~~ 190 (512)
..+..+++..+..+.+...+.+..+.....+.. .......+.+.+++++..++.+.|+|...++..++..+.++.+
T Consensus 205 tT~AaaMYIlGaVEi~L~Yi~P~aaIf~~~~a~~~~~am~nnlRvYGT~~Li~m~lIVf~GVK~Vnk~A~vfL~CVILSI 284 (1075)
T KOG2082|consen 205 TTVAAAMYILGAVEIFLTYIFPAAAIFGAEDAHDEAAAMLNNLRVYGTVFLILMALIVFVGVKFVNKFAPVFLACVILSI 284 (1075)
T ss_pred hHHHHHHHHHhHHHHHHHHHccHhhhcCccccccchhhhhcceehHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 999999999999998877554433222211111 1111224567788889999999999999999999988888888
Q ss_pred HHHHHhhhhhcccc-------------------c---------cc---------------------ccc-----------
Q 010352 191 LVIIIMLPLVALTT-------------------Q---------SA---------------------SYV----------- 210 (512)
Q Consensus 191 ~~~~i~~~~~~~~~-------------------~---------~~---------------------~~~----------- 210 (512)
+.+...++-...++ + .+ .+.
T Consensus 285 laiyaG~i~~~~~~~~~~vC~lgnr~L~~~~~d~c~k~~~~~~~~~~~~L~~~fC~~~~~~~~c~~y~~~nnvt~i~Gip 364 (1075)
T KOG2082|consen 285 LAIYAGGIKSIFDPPGFPVCMLGNRLLSSSIFDNCSKTETVDNDNVTSFLWGLFCNSNNDSATCDEYFSKNNVTEIQGIP 364 (1075)
T ss_pred HHHHHhhhhhccCCCCCeeEEecceeccccccccchhhhccccccHHHHHHHhhCCCCCCCcccccccccccceeecCCc
Confidence 87777666543320 0 00 000
Q ss_pred -------cccc--------c-c--------ccCCCCC----CCchhHHHHhhhhhhhhhccccccchhhhhccCcccccc
Q 010352 211 -------FTHF--------E-M--------SPEATGI----SSKPYAVILSFLVSQYSLYGYDSAAHLTEETKGADKTGP 262 (512)
Q Consensus 211 -------~~~~--------~-~--------~~~~~~~----~~~~~~~~~~~~~~~~~f~G~e~~~~~~~E~k~P~k~ip 262 (512)
.+|. + . .+++.+. .+.-.+|..-+.+-+-+.+|+-+.++.+++.|||+|++|
T Consensus 365 G~a~g~~~eNlws~Ylekg~~v~~g~~~~~~~~~~~~~~V~~Di~tSFtlLvgIfFPsVTGImaGSNrSGDLkDaQkSIP 444 (1075)
T KOG2082|consen 365 GLASGVFKENLWSAYLEKGEIVEYGVPSADIADSSGHPYVVQDITTSFTLLVGIFFPSVTGIMAGSNRSGDLKDAQKSIP 444 (1075)
T ss_pred chhhhhhhhhhhHhhhcccccccCCCCCCCcccccCCCceeecchhhHHHHHHhhccccceeeecCCCCccccchhhcCc
Confidence 0000 0 0 0000010 111234555555566688999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhccChhhhhcCCCcccCCCcHHHHHHHHhhcccCCcchhHHHHHHHHHHHHHhHHHH
Q 010352 263 IAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNETAGAFVPAQILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSV 342 (512)
Q Consensus 263 ~ai~~~~~~~~i~y~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 342 (512)
.+.+.+.+....+|+...+.+..++ +..-+-+. . |+++..-+ ..+. -.+.-.+++.++.++|++++.+.+
T Consensus 445 vGTI~AilTTS~vYlssv~lFGa~i-~~~vLRDK-f----G~sv~g~l--Vva~--laWPsPwVi~IGsFlST~GAgLQs 514 (1075)
T KOG2082|consen 445 VGTIAAILTTSFVYLSSVVLFGACI-EGVVLRDK-F----GQSVGGNL--VVAT--LAWPSPWVIVIGSFLSTCGAGLQS 514 (1075)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHhh-cchhhhhh-h----hhhccCcE--EEEE--ecCCCceeeehhHHHHHhHHHHhh
Confidence 9999999999999998888888777 42222221 1 11111100 0111 112256788899999999999999
Q ss_pred HhhhhhhHHhhhcCCCCCcccccccccccCCchHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010352 343 TTSAARVVYALSRDKGIPFSSIWRQLHPKHKVPSNAVWLCAAICIILGLPILKVNVVFTAITSICTIGWVGGYAVPIFAR 422 (512)
Q Consensus 343 ~~~~sR~l~~ma~d~~lP~~~~f~~~~~~~~~P~~a~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~ 422 (512)
+.+++|+|++.|||+.+||.+.|+|.. ++|.|.+|++++.+|+-..++ +++.+....++++.-++++...-++|...
T Consensus 515 LtgAPRLLQAIAkD~IiPfL~~F~~~~-~ngEPt~aLlLT~~Ice~gIL--igslD~iApilsmFFLMCY~fVNLaCavq 591 (1075)
T KOG2082|consen 515 LTGAPRLLQAIAKDDIIPFLAPFGHGK-ANGEPTWALLLTAIICECGIL--IGSLDLIAPILSMFFLMCYLFVNLACAVQ 591 (1075)
T ss_pred hcCcHHHHHHHhhcCccchhhhhcccc-CCCCccHHHHHHHHHHHhhhe--eechhHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 999999999999999999999999988 999999999999999998877 44444444444444444444444455555
Q ss_pred HhhcccCccCCCcccCCchhhHHHHHHHHHHHHHHHhcCCCCCCCCCCCccchhHHHHHHHHHHhhhhee
Q 010352 423 MVMAEQKFNAGPFYLGKASRPICLIAFLWICYTCSVFLLPTFYPISWDTFNYAPVALGVGLGLIMLWWLL 492 (512)
Q Consensus 423 ~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 492 (512)
-.+|. |+.+.+||. .++.+.++++..++++++...|+ +.++.+++-+.+|-++
T Consensus 592 tLLrt-PnWRPRfky--yHW~LSflG~sLC~~iMF~~SWy--------------yAlvAm~~a~~IYKYi 644 (1075)
T KOG2082|consen 592 TLLRT-PNWRPRFKY--YHWSLSFLGASLCLAIMFISSWY--------------YALVAMLIAGVIYKYI 644 (1075)
T ss_pred HHhcC-CCCCccchh--hhhHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHH
Confidence 55544 444444777 78999999999999999998665 5566666666666443
No 39
>KOG1288 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=99.92 E-value=4.3e-23 Score=205.26 Aligned_cols=411 Identities=14% Similarity=0.079 Sum_probs=302.0
Q ss_pred ccchHHHHHHHHHHhhhhhhHHHHHHhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcC-CCChhhHHHhhccCCC
Q 010352 20 EMTLFKTFAISFSTMTLFTGIIPLYGSSLLYAGPASLVWGWVVVSFFTWFVGLAMAEICSSFP-TTGSLYFWAAHLASPK 98 (512)
Q Consensus 20 ~l~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~G~~~~~~~~ii~~l~~~~~a~~~~el~~~~p-~~GG~y~~~~~~~g~~ 98 (512)
+||.++.+..-.....-..=+|.-.+..+.++|-...+.-.+++-.+.+.+.++..-+++.=- +.||.|..++|.+|++
T Consensus 66 kLgTf~GvfvPtaLsmfSiLlFLR~gfIvG~aGll~Tll~lliaY~I~llTvlSicAIsTNGaV~GGGaYymISRsLGpE 145 (945)
T KOG1288|consen 66 KLGTFEGVFVPTALSMFSILLFLRFGFIVGQAGLLKTLLMLLIAYAILLLTVLSICAISTNGAVRGGGAYYMISRSLGPE 145 (945)
T ss_pred cccceeeEechhHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHHHHHHHHhhhccCCceecCceEEEEEcccCcc
Confidence 788876655444432221445777788888888876777778888888888888888877654 5789999999999999
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC-CccCchHHHHHHHHHHHHHHHHHHhchhhHHHH
Q 010352 99 WGPFASWCCAWLETIGLIAGMGTQAYAGSQTLQSIILLCTGTNKDG-GYFAPKWLFLCMYIGLTIIWAVLNTFALEVIAF 177 (512)
Q Consensus 99 ~g~~~g~~~g~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~g~k~~~~ 177 (512)
+|. -.|..+.++++...++.+.++.+-+.+.++....-.++. -++...|+..+.+..+..++..+.+.|...++|
T Consensus 146 fGG----SIGllFf~anV~~~am~isG~vE~il~nfG~~a~g~sg~~~lP~g~ww~fly~t~vl~l~~~vc~lGsalfAk 221 (945)
T KOG1288|consen 146 FGG----SIGLLFFVANVFNCAMNISGFVEPILDNFGKEAQGASGSQFLPDGYWWRFLYTTLVLALCLIVCLLGSALFAK 221 (945)
T ss_pred cCC----eeeehhhHHHHhcchhhhhhhhHHHHHhcCccccCCcccccCCCCcchhhHHHHHHHHHHHHHHHhhHHHHHh
Confidence 977 667778888899999999999998888776422111111 244567777778888888899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhccccccc------------------ccccccccc--ccCCC-CCC-CchhHHHHhhh
Q 010352 178 IDIISMWWQVAGGLVIIIMLPLVALTTQSA------------------SYVFTHFEM--SPEAT-GIS-SKPYAVILSFL 235 (512)
Q Consensus 178 ~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~------------------~~~~~~~~~--~~~~~-~~~-~~~~~~~~~~~ 235 (512)
..+++.......++...+..++..+..... ++.++.+.. .|..+ +.. .+...|...+.
T Consensus 222 as~i~f~~is~s~~si~iS~ifvgp~~~~ip~~~~p~~sn~t~~~~yTG~~~sTl~dNL~~~yt~dyt~~~~~~F~~~Fg 301 (945)
T KOG1288|consen 222 ASNILFVVISVSLFSIPISFIFVGPFKDPIPVPGDPILSNTTLFVHYTGLSWSTLMDNLGSHYTEDYTGGGYEDFASTFG 301 (945)
T ss_pred hhhhhhhHHHHHHhhhhheeEEeccccCCCCCCCCccccCcceeeeecCccHHHHhhhhhhhhcccccCCCceehhhhhe
Confidence 998877666555555555444432221110 111111100 00000 011 12234667777
Q ss_pred hhhhhhccccccchhhhhccCcccccchHHHHHHHHHHHHHHHHHHHHHHhccChhhhhcCCCcccCCCcHHHHHHHHhh
Q 010352 236 VSQYSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNETAGAFVPAQILYDAFH 315 (512)
Q Consensus 236 ~~~~~f~G~e~~~~~~~E~k~P~k~ip~ai~~~~~~~~i~y~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 315 (512)
..+-.-+|.-+.+++++|.|+|.|++||+.+.++...++.|++..+.+.... +...++++- +.+.
T Consensus 302 V~F~g~tGimAGAnMSgELk~PSkSIP~GTl~ava~Tf~~Yvl~~flm~~t~-~r~~Lq~dy--------------~v~~ 366 (945)
T KOG1288|consen 302 VFFPGTTGIMAGANMSGELKAPSKSIPKGTLSAVAFTFFVYVLVIFLMGCTV-PRTLLQNDY--------------DVMM 366 (945)
T ss_pred eeeccchhhhcCCCcCccccCccccCCccchHHHHHHHHHHHHHHHHhccCc-chHHhhhch--------------hhee
Confidence 7777889999999999999999999999999999999999999999988887 544444431 1122
Q ss_pred cccCCcchhHHHHHHHHHHHHHhHHHHHhhhhhhHHhhhcCCCCCcccccccccccCCchHHHHHHHHHHHHHHhccccc
Q 010352 316 GRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQLHPKHKVPSNAVWLCAAICIILGLPILK 395 (512)
Q Consensus 316 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~ma~d~~lP~~~~f~~~~~~~~~P~~a~~~~~~i~~~~~~~~~~ 395 (512)
.. . ....++.++++...+.+.++.+.+++|+|.++|||+++|....|+|...+.+.|+.|+.++..+..++.+
T Consensus 367 ~i-s--l~p~fi~iGi~sttlfss~s~liGasrvL~alakD~lfg~ll~fak~~s~~~nP~~av~vtw~lvqlvll---- 439 (945)
T KOG1288|consen 367 HI-S--LHPPFILIGILSTTLFSSMSGLIGASRVLEALAKDDLFGGLLFFAKGSSYDGNPYVAVGVTWLLVQLVLL---- 439 (945)
T ss_pred ec-c--ccchHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcccchhhheeeeccccCCCceeeeeHHHHHHHHHHH----
Confidence 11 1 1456777888889999999999999999999999999998889999988889999999999999998877
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc--CccCCCcccCCchhhHHHHHHHHHHHHHHHh
Q 010352 396 VNVVFTAITSICTIGWVGGYAVPIFARMVMAEQ--KFNAGPFYLGKASRPICLIAFLWICYTCSVF 459 (512)
Q Consensus 396 ~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 459 (512)
..+++.+.++.+..+++.|..+.++++..+.. |+-+..||. +.+-...++.+.++.+++..
T Consensus 440 -~g~~N~iA~~it~~FLlty~~vNLacl~LeissAPNFRPtFky--F~w~TclvG~l~s~~mMfvV 502 (945)
T KOG1288|consen 440 -WGDINKIASMITMTFLLTYGAVNLACLLLEISSAPNFRPTFKY--FNWHTCLVGVLLSLGMMFVV 502 (945)
T ss_pred -HhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchhhh--hhHHHHHHHHHHHHhhhhee
Confidence 34889999999999999999998888877643 333344666 66667777877777776654
No 40
>PHA02764 hypothetical protein; Provisional
Probab=99.86 E-value=4.9e-20 Score=168.66 Aligned_cols=281 Identities=16% Similarity=0.166 Sum_probs=180.2
Q ss_pred cCCCcccccccchHHHHHHHHHHhhhhhhHHHHHHhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChhhHH
Q 010352 11 LGYKQELRREMTLFKTFAISFSTMTLFTGIIPLYGSSLLYAGPASLVWGWVVVSFFTWFVGLAMAEICSSFPTTGSLYFW 90 (512)
Q Consensus 11 ~~~~~~l~r~l~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~G~~~~~~~~ii~~l~~~~~a~~~~el~~~~p~~GG~y~~ 90 (512)
.++.++|-|+.+.+|.+...++.+..+.++....-......|.. .+++|+++++++++.++||+|+++++|++||.|.|
T Consensus 4 vReSSGLVREvs~lDAF~~Nl~~m~~Gi~Is~~~l~a~l~pG~n-lLLAWLLGGLlALPgAL~YAELGSAmPrAGGdYVY 82 (399)
T PHA02764 4 ERKSSGIIKSFNILDIFSINLLYMGILSGISYPLFVSSLLKNVN-LLFAILIGAVFEIPLLLMYYKLTTKFPLNGGDYAY 82 (399)
T ss_pred chhcCCceeeccHHHHHHHHHHhhccchhHHHHHHHhhcCCchh-HHHHHHHHHHHHHHHHHHHHHHHhhCCCCCceEEE
Confidence 46778999999999999999999865333211111111234555 88999999999999999999999999999999999
Q ss_pred HhhccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccCch-HHHHHHHHHHHHHHHHHHh
Q 010352 91 AAHLASPKWGPFASWCCAWLETIGLIAGMGTQAYAGSQTLQSIILLCTGTNKDGGYFAPK-WLFLCMYIGLTIIWAVLNT 169 (512)
Q Consensus 91 ~~~~~g~~~g~~~g~~~g~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~ 169 (512)
.+|+ +||..|++.||..|..+....+..+-.-. + +...++ .....+- .-......+-.
T Consensus 83 ISRA----FGP~~GFLvG~a~WLtl~~G~Pal~~l~~--~--------------~~~i~~~~~~f~~~-~s~~~i~~~i~ 141 (399)
T PHA02764 83 IRTA----FSSKFYTIFGISLWLTYVLSQPILGDLVL--L--------------NFNIQNQFEQFLIV-ESLFPIVLLII 141 (399)
T ss_pred hHHh----hCccHHHHHHHHHHHHHHhhcchhhheee--e--------------eeeeHHHHHHHHHH-HHHHHHHHHHH
Confidence 9999 77777999999999987666555442111 0 111111 1111111 11122233344
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccccccccccccCCCCCCCchhHHHHhhhhhhhhhccccccch
Q 010352 170 FALEVIAFIDIISMWWQVAGGLVIIIMLPLVALTTQSASYVFTHFEMSPEATGISSKPYAVILSFLVSQYSLYGYDSAAH 249 (512)
Q Consensus 170 ~g~k~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~ 249 (512)
.|.|..+|.-.++.+...+ .++.... .+-++..+++ ..++ ....++..-.-.|.=.|+..+
T Consensus 142 ~~~~~~~~~v~il~~a~~i-------~aif~~~--~s~n~~~~~f-------~~sn---t~~~a~~~~l~~~~fi~a~~y 202 (399)
T PHA02764 142 ANKKIYAKIVDILAIAQII-------IAIFIAF--KSFNFQYQNF-------TISN---TLLSALLFDLSAFIFINAISY 202 (399)
T ss_pred cccHHHHHHHHHHHHHHHH-------HHHHhhc--cceeEEEcce-------eehH---HHHHHHHHHHHHHHHhccHHH
Confidence 5677777766554333332 2222221 1222222333 1121 255566666667788899999
Q ss_pred hhhhccCcccccchHHHHHHHHHHHHHHHHHHHHHHhccChhhhhcCCCcccCCCcHHHHHHHHhhcccCCcchhHHHHH
Q 010352 250 LTEETKGADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNETAGAFVPAQILYDAFHGRYHNSTGAIILLI 329 (512)
Q Consensus 250 ~~~E~k~P~k~ip~ai~~~~~~~~i~y~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 329 (512)
.++|.||.+|....+-..+...+.++-+...+ +.+ . ++.+
T Consensus 203 ~~~ei~n~~k~~~~gyf~s~~~~~~~~ii~sy---------~n~--------------~-----------------il~~ 242 (399)
T PHA02764 203 IAGEIKNIKKSSMIGYFVSYGIVAILSIIDSY---------SNL--------------N-----------------ILFA 242 (399)
T ss_pred HHHHhhcchhhhhhhhHHHHHHHHHHHHHHhh---------hhH--------------H-----------------HHHH
Confidence 99999999998877777666655554332221 100 1 1111
Q ss_pred HHHHHHHHhHHHHHhhhhhhHHhhhcCCCCCcccccccccccCCchH
Q 010352 330 VIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQLHPKHKVPS 376 (512)
Q Consensus 330 ~~~~~~~~~~~~~~~~~sR~l~~ma~d~~lP~~~~f~~~~~~~~~P~ 376 (512)
.+....++-+....-..||++++|+.|+.+| ++|+|.+ + ++|.
T Consensus 243 ~~~~w~~~y~~~~~~~~srli~~~~fd~~lp--e~f~k~~-~-nv~~ 285 (399)
T PHA02764 243 LMPIWFFSYMPIANKIQSRLIQTMSFDKVLP--EKFSKIN-P-NVLL 285 (399)
T ss_pred HHHHHHHhheeeecchHHHHHHHHHhhhhch--HHHhccC-C-Ccee
Confidence 2444556666666778899999999999999 9999997 4 5777
No 41
>TIGR00912 2A0309 spore germination protein (amino acid permease). This model describes spore germination protein GerKB and paralogs from Bacillus subtilis, Clostridium tetani, and other known or predicted endospore-forming members of the Firmicutes (low-GC Gram positive bacteria). Members show some similarity to amino acid permeases.
Probab=99.86 E-value=1.1e-18 Score=174.93 Aligned_cols=288 Identities=13% Similarity=0.022 Sum_probs=210.3
Q ss_pred cccchHHHHHHHHHHhhhhhhHHHHHHhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChhhHHHhhccCCC
Q 010352 19 REMTLFKTFAISFSTMTLFTGIIPLYGSSLLYAGPASLVWGWVVVSFFTWFVGLAMAEICSSFPTTGSLYFWAAHLASPK 98 (512)
Q Consensus 19 r~l~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~G~~~~~~~~ii~~l~~~~~a~~~~el~~~~p~~GG~y~~~~~~~g~~ 98 (512)
++++.+|.+.+.++.++| +|++..++...+.+|+. ++++++++++.+++.+++++|+++++|+. +.+.|.++.
T Consensus 1 ~~is~~q~~~l~~~~~iG-~gil~~P~~~~~~a~~~-~wi~~ll~~~~~~~~~~~~~~l~~~~p~~-~~~~~~~~~---- 73 (359)
T TIGR00912 1 DKISSKQLIFLISSTMIG-SGLLTLPALVSQSAGQD-GWISIILGGLIIIFLLCLMIKIMSKFPEK-NFSEILSKY---- 73 (359)
T ss_pred CcCcHHHHHHHHHHHHHH-HHHHhhhHHHHhccCCC-eeHHHHHHHHHHHHHHHHHHHHHHHCCCC-CHHHHHHHH----
Confidence 368999999999999999 99999999888888887 99999999999999999999999999987 699999999
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccCchHHHHHHHHHHHHHHHHHHhchhhHHHHH
Q 010352 99 WGPFASWCCAWLETIGLIAGMGTQAYAGSQTLQSIILLCTGTNKDGGYFAPKWLFLCMYIGLTIIWAVLNTFALEVIAFI 178 (512)
Q Consensus 99 ~g~~~g~~~g~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~k~~~~~ 178 (512)
+|++.|++.+|.++.......+......++++...+. +.++ ...+.+.+++++...+..|.|..+|+
T Consensus 74 ~Gk~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-----------~~tp--~~~~~l~~l~~~~~~~~~Gi~~i~r~ 140 (359)
T TIGR00912 74 LGKILGRLLSILFILYFFLIAAYLIRIFADFIKTYLL-----------PRTP--IIVIIILIIIVSIYIVRKGIEVLLRT 140 (359)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----------CCCC--HHHHHHHHHHHHHHHHHccHHHHHHH
Confidence 7777899999999887777777777777777665331 1122 23445566677888899999999999
Q ss_pred HHHHHHHHHHHH-HHHHHhhhhhccccccccccccccccccCCCCCCCchhHHHHhhh-hhhhhhccccccchhhhhccC
Q 010352 179 DIISMWWQVAGG-LVIIIMLPLVALTTQSASYVFTHFEMSPEATGISSKPYAVILSFL-VSQYSLYGYDSAAHLTEETKG 256 (512)
Q Consensus 179 ~~~~~~~~i~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~f~G~e~~~~~~~E~k~ 256 (512)
+.++..+.+... +++..... +..+..+ ..+. -+.++.+ +..+.. ...++|.|+|......+|.||
T Consensus 141 ~~i~~~~~i~~~~~il~~~~~---~~~~~~~--l~P~----~~~g~~~----~~~~~~~~~~~~f~g~~i~~~~~~~~~~ 207 (359)
T TIGR00912 141 AEILLIIFLILFILVLILLAP---KLGNIKN--LLPV----LENGLSP----ILKGAYPVVTFAFGEIEIFFLLFPLLSK 207 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHhc---ccccHHH--ccCc----cccCcHH----HHhhhhHHhhhhhHHHHHHHHHHHHhCC
Confidence 999988876653 22222111 1111111 1222 2223333 666665 788999999999999999999
Q ss_pred cccccchHHHHHHHHHHHHHHHHHHHHHHhccChhhhhcCCCcccCCCcHHHHHHHHhhcccCCcc---hhHHHHHHHHH
Q 010352 257 ADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNETAGAFVPAQILYDAFHGRYHNST---GAIILLIVIWG 333 (512)
Q Consensus 257 P~k~ip~ai~~~~~~~~i~y~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~---~~~~~~~~~~~ 333 (512)
| |+.||++..+..++.++|++...+..... ++++..+.. .|..+.....- .++. ...+....-+.
T Consensus 208 ~-~~~~k~~~~~~~~~~~ly~~~~~~~i~~l-g~~~~~~~~------~P~~~~~~~i~----~~~f~eR~e~~~~~~w~~ 275 (359)
T TIGR00912 208 K-KKIKKSIIKAIIIGVLLYILTTFVSISVF-GGNVTKNLY------WPTLELIKLIN----IGDFIERFELIVMTFWVF 275 (359)
T ss_pred h-hhhHHHHHHHHHHHHHHHHHHHHHHHhee-cHHHhhhhc------ccHHHHHHHhh----HhHHHHHHHHHHHHHHHH
Confidence 6 56999999999999999999999999888 777776543 34444333321 1111 22333444455
Q ss_pred HHHHhHHHHHhhhhhhHH
Q 010352 334 SFFFGGLSVTTSAARVVY 351 (512)
Q Consensus 334 ~~~~~~~~~~~~~sR~l~ 351 (512)
+.+.....+.+..++.+.
T Consensus 276 ~~f~~~~~~~~~~~~~~~ 293 (359)
T TIGR00912 276 IIFVKIAFYLYIAVKGLS 293 (359)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 666666677777777764
No 42
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. Aromatic amino acids are concentrated in the cytoplasm of Escherichia coli by 4 distinct transport systems: a general aromatic amino acid permease, and a specific permease for each of the 3 types (Phe, Tyr and Trp) []. It has been shown [] that some permeases in E. coli and related bacteria are evolutionary related. These permeases are proteins of about 400 to 420 amino acids and are located in the cytoplasmic membrane and, like bacterial sugar/cation transporters, are thought to contain 12 transmembrane (TM) regions [] - hydropathy analysis, however, is inconclusive, suggesting the possibility of 10 to 12 membrane-spanning domains []. The best conserved domain is a stretch of 20 residues which seems to be located in a cytoplasmic loop between the first and second transmembrane region.
Probab=99.84 E-value=2e-17 Score=165.89 Aligned_cols=388 Identities=14% Similarity=0.077 Sum_probs=272.3
Q ss_pred cccchHHHHHHHHHHhhhhhhHHHHHHhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChhhHHHhhccCCC
Q 010352 19 REMTLFKTFAISFSTMTLFTGIIPLYGSSLLYAGPASLVWGWVVVSFFTWFVGLAMAEICSSFPTTGSLYFWAAHLASPK 98 (512)
Q Consensus 19 r~l~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~G~~~~~~~~ii~~l~~~~~a~~~~el~~~~p~~GG~y~~~~~~~g~~ 98 (512)
|+-+.++...+..|+.+| +|+...+-. .+.+|-....+..++++.++...++.++|.+.+.|+..+....+++.
T Consensus 1 ~~~~~~~~~~li~GTaIG-AGmLaLP~~-~~~~Gf~~~~~~l~~~w~~~~~s~l~~~E~~~~~~~~~~~~~~a~~~---- 74 (394)
T PF03222_consen 1 KNNSILGGVLLIAGTAIG-AGMLALPIA-TAGAGFLPSLILLLIAWPLMYYSGLLLAEVSLNTPEGSSLTSMAEKY---- 74 (394)
T ss_pred CCchHHHHHHHHHHccHh-HHHHHHHHH-HHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHH----
Confidence 345778899999999999 998888764 45566665888889999999999999999999999999999999999
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccCchHHHHHHHHHHHHHHHHHHhchhhHHHHH
Q 010352 99 WGPFASWCCAWLETIGLIAGMGTQAYAGSQTLQSIILLCTGTNKDGGYFAPKWLFLCMYIGLTIIWAVLNTFALEVIAFI 178 (512)
Q Consensus 99 ~g~~~g~~~g~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~k~~~~~ 178 (512)
+|+..+++++..+.+.......++....++.+.++++... +.+.+++ ...+.+..++..+-+.|.|...|+
T Consensus 75 lG~~g~~~~~~~~~~~~y~ll~AYisg~g~~~~~~l~~~~------~~~~~~~---~~~~~f~~i~~~iv~~g~~~v~~~ 145 (394)
T PF03222_consen 75 LGKKGGIVIGISYLFLLYALLVAYISGGGSILSSLLGNQL------GTDLSPW---LSSLLFTIIFGGIVYFGTKAVDRI 145 (394)
T ss_pred hChHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHhc------CCCCcHH---HHHHHHHHHHHHHHHhhHHHHHHH
Confidence 5555688888888888777778889999999998886521 1222332 344455566777788999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhccccccccccccccccccCCCCCCCchhHHHHhhhhhhhhhccccccchhhhhccCcc
Q 010352 179 DIISMWWQVAGGLVIIIMLPLVALTTQSASYVFTHFEMSPEATGISSKPYAVILSFLVSQYSLYGYDSAAHLTEETKGAD 258 (512)
Q Consensus 179 ~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~~~E~k~P~ 258 (512)
+..+...+++.++.+.+..+.....++ . ... . +...+| .....++...+++|.-...++.+.+..++-+
T Consensus 146 n~~lv~~~i~~~~~l~~~~~p~~~~~~---L--~~~-~-~~~~~~----~~~~~~lPv~~~Sf~f~~ivPsl~~~~~~d~ 214 (394)
T PF03222_consen 146 NRVLVFGMIISFIILVVYLIPHWNPSN---L--LDA-P-PSPSDW----SYILPALPVLVFSFGFHNIVPSLVKYLGGDP 214 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcCHHH---h--hcc-c-cccccH----HHHHHHHHHHHHHHHHHhhhHHHHHHhCccH
Confidence 999999999998888888776532111 1 111 0 022233 3478899999999999999999999999767
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHhccChhhhhcCCCcccCCCcHHHHHHHHhhcccCCcchhHHHHHHHHHHHHHh
Q 010352 259 KTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNETAGAFVPAQILYDAFHGRYHNSTGAIILLIVIWGSFFFG 338 (512)
Q Consensus 259 k~ip~ai~~~~~~~~i~y~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 338 (512)
|+++|++..+..+..++|++...+..+.+ |.++..+..+. +.+. .......++..++++...+..+...++..++
T Consensus 215 ~k~~~ai~~Gs~i~lv~yl~w~~~~lg~l-~~~~~~~~~~~---~~~~-~~~~~~~~~~~~s~~i~~~~~~fa~~Ai~TS 289 (394)
T PF03222_consen 215 KKIRKAIIIGSLIPLVMYLLWVFSILGSL-PREQFAEAIAQ---GGNV-SALVSALANVSGSPWISILGSIFAFFAIATS 289 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CHHHHHHHHhc---CCCh-HHHHHHHHhhcCCcHHHHHHHHHHHHHHHHH
Confidence 88999999999999999999999999988 55544322210 1122 3334444544477777888888888888888
Q ss_pred HHHHHhhhhhhHHhhhcCCCCCcccccccccccCCchHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHH-
Q 010352 339 GLSVTTSAARVVYALSRDKGIPFSSIWRQLHPKHKVPSNAVWLCAAICIILGLPILKVNVVFTAITSICTIGWVGGYAV- 417 (512)
Q Consensus 339 ~~~~~~~~sR~l~~ma~d~~lP~~~~f~~~~~~~~~P~~a~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l- 417 (512)
..+...+....+.+.- |. .+ +++++ .....++.+...++.+.. .+.|....+.++....+.+.+
T Consensus 290 FlGv~lgl~d~l~d~~--------k~-~~-~~~~r--~~~~~ltf~ppl~~a~~~---p~~F~~al~~aG~~~~il~~il 354 (394)
T PF03222_consen 290 FLGVYLGLFDFLADLF--------KL-KN-NSSGR--LKTWLLTFLPPLIFALLF---PNGFLIALGYAGIGIAILLGIL 354 (394)
T ss_pred HHHHHHHHHHHHHHHH--------cC-Cc-cccch--HHHHHHHHHhHHHHHHHC---cHHHHHHHHhhcHHHHHHHHHH
Confidence 8888888777765432 21 11 11222 233444455555554432 345666777766554444444
Q ss_pred HHHHHHhhcccCccCCCcccCCchhhHHHHHHHHHHH
Q 010352 418 PIFARMVMAEQKFNAGPFYLGKASRPICLIAFLWICY 454 (512)
Q Consensus 418 ~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 454 (512)
+.+..++.|+++ ++++|+.+ .+.......+....+
T Consensus 355 P~~m~~~~r~~~-~~~~~~~~-gg~~~l~~~~~~~i~ 389 (394)
T PF03222_consen 355 PALMVWKARKRK-PKQPYRVP-GGNFTLLLVIIFGIL 389 (394)
T ss_pred HHHHHHHHHccc-CCCCeEEe-CcHHHHHHHHHHHHH
Confidence 666667766554 44558887 555554444444433
No 43
>KOG2083 consensus Na+/K+ symporter [Inorganic ion transport and metabolism]
Probab=99.84 E-value=2.3e-19 Score=177.80 Aligned_cols=414 Identities=14% Similarity=0.055 Sum_probs=298.0
Q ss_pred cccccchHHHHHHHHHHhhhhhhHHHHHHhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcC-CCChhhHHHhhcc
Q 010352 17 LRREMTLFKTFAISFSTMTLFTGIIPLYGSSLLYAGPASLVWGWVVVSFFTWFVGLAMAEICSSFP-TTGSLYFWAAHLA 95 (512)
Q Consensus 17 l~r~l~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~G~~~~~~~~ii~~l~~~~~a~~~~el~~~~p-~~GG~y~~~~~~~ 95 (512)
-+-++||++.+.......+.+.-+|.-.+...+++|....++...++..+++.++++..-++++=. ++||.|..++|.+
T Consensus 26 ~~v~fg~~~gv~~~cmlni~gv~lflrl~wivgqagi~~~~~ii~~~~~vt~it~lSa~~I~t~~~vk~Gg~yflis~sl 105 (643)
T KOG2083|consen 26 GPVLFGWWDGVFVRCMLNIFGVILFLRLGWIVGQAGIGNSVLIIGLTTVVTLITVLSAIAIVTRGQVKSGGVYFLISRSL 105 (643)
T ss_pred CceEEeeeehhhhhhhHHHHHHHHhhhhhheeecchhhhhHHHHHHHHHHHHHHHHhHheeeecceeccCcEEEEEEecc
Confidence 344799998887766655543666777788889999888888888888899999998888877654 6899999999999
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccCchHHHHHHHHHHHHHHHHHHhchhhHH
Q 010352 96 SPKWGPFASWCCAWLETIGLIAGMGTQAYAGSQTLQSIILLCTGTNKDGGYFAPKWLFLCMYIGLTIIWAVLNTFALEVI 175 (512)
Q Consensus 96 g~~~g~~~g~~~g~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~k~~ 175 (512)
|+++|. ..|..|.+++....+.+...+++.+..++.. + +.+....++.+..+++..+|..|+|+.
T Consensus 106 g~efgg----sigiIy~f~~aVa~am~~vgfaEsv~~l~~~---------~--s~~~i~gi~~vt~~ill~i~~ag~~w~ 170 (643)
T KOG2083|consen 106 GPEFGG----SIGIIYAFANAVATAMYVVGFAESVAHLFET---------E--SKEMIDGIGSVTVLILLAINVAGVEWE 170 (643)
T ss_pred cccccc----hhHHHHHHHHHHHHHHhhhhHHHHHHHHHHh---------c--cHHHhcchhHHHHHHHHHhhhccchhH
Confidence 888866 6677777788888999999999999999864 1 233333478888889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhcccc--ccccccccccccccCCCCCCCchhHHHHhhhhhhhhhccccccchhhhh
Q 010352 176 AFIDIISMWWQVAGGLVIIIMLPLVALTT--QSASYVFTHFEMSPEATGISSKPYAVILSFLVSQYSLYGYDSAAHLTEE 253 (512)
Q Consensus 176 ~~~~~~~~~~~i~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~~~E 253 (512)
.|.|.++..+.++.+.-+.+..+...... ....+..+.+ ..+...++.+ ...|+.-+...+-+.+|.-+..+++++
T Consensus 171 ~k~q~~ll~il~iai~~f~~gs~~~~~~~~~g~~~~~a~~~-~~n~~~~~~~-~~tfF~vf~vfFpaatgilaG~nisGd 248 (643)
T KOG2083|consen 171 AKLQIVLLLILLIAIADFLVGSFFSPNEFSSGFFGYRADIF-VENLNPDIDP-GYTFFSVFAVFFPAATGILAGANISGD 248 (643)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhccChhhhcccccccchhhc-ccCCCCCcCC-CCceEeeeeeecchhhhhhccccccCC
Confidence 99999998888888888877776653211 1111212222 1001112221 245777788888899999999999999
Q ss_pred ccCcccccchHHHHHHHHHHHHHHHHHHHHHHhccChhhhhcCCCcccC--CCcHHHHHHHHhhcccCCcchhHHHHHHH
Q 010352 254 TKGADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNETAG--AFVPAQILYDAFHGRYHNSTGAIILLIVI 331 (512)
Q Consensus 254 ~k~P~k~ip~ai~~~~~~~~i~y~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 331 (512)
.|+|++++|++...+......+|.....-..... .-+...+..+.... +.-. ....+.+....+ ....+..+.
T Consensus 249 L~~Pq~~IP~GaL~Ai~vst~~yl~~i~~~Ga~~-~r~~~~~~~~~~~~~c~~gl-~~~~qv~smvS~---~~Pl~~AGi 323 (643)
T KOG2083|consen 249 LKDPQKAIPLGALLAIGVSTLLYLIFIADLGATP-VRDALENWNDTSTKSCPIGL-TNYLQVMSMVST---FGPLITAGI 323 (643)
T ss_pred CCCchhhcccchhhhhhhhhhhhhhhhhhcccHH-HHHHhccchhhccCCCccch-HHHHHHHHhHhh---cccchhhHH
Confidence 9999999999999999999999987665554443 21111111000000 0001 122222221111 344566778
Q ss_pred HHHHHHhHHHHHhhhhhhHHhhhcCCCCCcccccccccccCCchHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHH
Q 010352 332 WGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQLHPKHKVPSNAVWLCAAICIILGLPILKVNVVFTAITSICTIGW 411 (512)
Q Consensus 332 ~~~~~~~~~~~~~~~sR~l~~ma~d~~lP~~~~f~~~~~~~~~P~~a~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~ 411 (512)
..+.+++..+.+.++.++++++.+|+..|...+|.|..+|++.|.++..++...+...+.+. ..+.+..+.....
T Consensus 324 ~~a~LSsalsslVsap~V~QaL~kd~~yp~i~~f~KgyGkn~~Plrg~~l~~~~av~fi~ig-----eln~iapiis~Ff 398 (643)
T KOG2083|consen 324 LAAELSSALSSLVSAPKVLQALCKDSLYPSILFFAKGYGKNKEPLRGYLLTFLTAVSFIAIG-----ELNIIAPIISNFF 398 (643)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHhcCCCccHHHHHccCCccccchHHHHHHHHhHheeEEec-----ccceeccchhhhh
Confidence 88889999999999999999999999999889999999999999999999999998876632 5567777788888
Q ss_pred HHHHHHHHHHHHhhccc-C-ccCCCcccCCchhhHHHHHHHHHHHHHHHh
Q 010352 412 VGGYAVPIFARMVMAEQ-K-FNAGPFYLGKASRPICLIAFLWICYTCSVF 459 (512)
Q Consensus 412 ~~~~~l~~~~~~~~r~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 459 (512)
...|.+.....+.-+-. + ..+++++. .-++++..+.+.++..++..
T Consensus 399 L~syAlinf~~f~aSl~~s~~wRp~f~~--yn~wVSllGalKOG~ImFli 446 (643)
T KOG2083|consen 399 LLSYALINFSCFHASLAISEGWRPSFKF--YNAWVSLLGALLCLAIMFLI 446 (643)
T ss_pred hhhhhccchhhhhhhhccccccCchhhh--HHHHHHHHHHHHHHHHHHHH
Confidence 88999987777655422 2 22233444 33567777777777766655
No 44
>PRK10483 tryptophan permease; Provisional
Probab=99.82 E-value=1.5e-16 Score=158.07 Aligned_cols=394 Identities=12% Similarity=-0.022 Sum_probs=266.1
Q ss_pred cccccccchHHHHHHHHHHhhhhhhHHHHHHhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChhhHHHhhc
Q 010352 15 QELRREMTLFKTFAISFSTMTLFTGIIPLYGSSLLYAGPASLVWGWVVVSFFTWFVGLAMAEICSSFPTTGSLYFWAAHL 94 (512)
Q Consensus 15 ~~l~r~l~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~G~~~~~~~~ii~~l~~~~~a~~~~el~~~~p~~GG~y~~~~~~ 94 (512)
+..|++.+.++...+..|+.+| +|+...+. +.+..|-..+....++.++++...++...|.+.++|+.-+....+++.
T Consensus 5 ~~~~~~~~~~g~~~iIaGT~IG-aGMLaLP~-~~a~~GF~~s~~~l~~~W~~M~~taLlllEv~l~~~~g~~~~tma~~~ 82 (414)
T PRK10483 5 TTTQTSPSLLGGVVIIGGTIIG-AGMFSLPV-VMSGAWFFWSMAALIFTWFCMLHSGLMILEANLNYRIGSSFDTITKDL 82 (414)
T ss_pred ccccCCCcHHHHHHHHHHchHh-HHHHHHHH-HHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHH
Confidence 3456789999999999999999 99888775 445566555888889999999999999999999999988999999999
Q ss_pred cCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccCchHHHHHHHHHHHHHHHHHHhchhhH
Q 010352 95 ASPKWGPFASWCCAWLETIGLIAGMGTQAYAGSQTLQSIILLCTGTNKDGGYFAPKWLFLCMYIGLTIIWAVLNTFALEV 174 (512)
Q Consensus 95 ~g~~~g~~~g~~~g~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~k~ 174 (512)
+||. ...+++..+.+-......++....++.+++.++. .+...+.+ .-.+.+..++..+.+.|.|.
T Consensus 83 LG~~----g~~i~~~s~lfl~Y~Ll~AYisg~g~il~~~l~~-------~~~~i~~~---~~~llF~~~~~~iv~~gt~~ 148 (414)
T PRK10483 83 LGKG----WNVVNGISIAFVLYILTYAYISASGSILHHTFAE-------MSLNVPAR---AAGFGFALLVAFVVWLSTKA 148 (414)
T ss_pred cChH----HHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHh-------cCCCCcHH---HHHHHHHHHHHHHHHhhhhH
Confidence 6664 3555555555555555666777778888887743 12333333 44556777788889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhccccccccccccccccccCCCCCCCchhHHHHhhhhhhhhhccccccchhhhhc
Q 010352 175 IAFIDIISMWWQVAGGLVIIIMLPLVALTTQSASYVFTHFEMSPEATGISSKPYAVILSFLVSQYSLYGYDSAAHLTEET 254 (512)
Q Consensus 175 ~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~~~E~ 254 (512)
..|+++++...+++.++..+...+.... ..+....+. . +...++ ....++...+++|.=...++++.++.
T Consensus 149 vd~~n~~l~~~~i~~f~~~~~~l~~~i~---~~~L~~~~~-~--~~~~~~----~~~~alPvl~~SFgfh~iIPsl~~y~ 218 (414)
T PRK10483 149 VSRMTAIVLGAKVITFFLTFGSLLGHVQ---PATLFNVAE-S--NASYAP----YLLMTLPFCLASFGYHGNVPSLMKYY 218 (414)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcC---HHHHhcccc-c--cchhHH----HHHHHHHHHHhhccCCCcchHHHHHh
Confidence 9999999999999988877766554322 111100001 0 111122 27788899999999889999999998
Q ss_pred cCcccccchHHHHHHHHHHHHHHHHHHHHHHhccChhhhhcCCCcccCCCcHHHHHHHHhhcccCCcchhHHHHHHHHHH
Q 010352 255 KGADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNETAGAFVPAQILYDAFHGRYHNSTGAIILLIVIWGS 334 (512)
Q Consensus 255 k~P~k~ip~ai~~~~~~~~i~y~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 334 (512)
++-.|.++|++..+..+..++|++...+..+.+ +.+++.+.... +++. +.+...+++..+.+....+..+...++
T Consensus 219 ~~d~~kir~~I~iGs~Iplv~yl~W~~~~lg~l-~~~~~~~~~~~---~~ni-~~L~~~l~~~~~~~~i~~~~~~Fa~~A 293 (414)
T PRK10483 219 GKDPKTIVKCLVYGTLMALALYTIWLLATMGNI-PRPEFIGIAEK---GGNI-DVLVQALSGVLNSRSLDLLLVVFSNFA 293 (414)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CHHHHHHHHHc---CCCh-HHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 865568999999999999999999999999999 65654322100 2222 334444555546666667777777777
Q ss_pred HHHhHHHHHhhhhhhHHhhhcCCCCCcccccccccccCCchHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHH
Q 010352 335 FFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQLHPKHKVPSNAVWLCAAICIILGLPILKVNVVFTAITSICTIGWVGG 414 (512)
Q Consensus 335 ~~~~~~~~~~~~sR~l~~ma~d~~lP~~~~f~~~~~~~~~P~~a~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 414 (512)
..+|..+...+....+.++-+.+. . + + + .....+++.+...++.+.. .+.|..-.+.+.....+.
T Consensus 294 i~TSFlGv~LGL~d~l~D~~k~~~-----~----~-~-~-r~~~~~ltflPPl~~al~~---P~~Fl~AL~yAG~~~~il 358 (414)
T PRK10483 294 VASSFLGVTLGLFDYLADLFGFDD-----S----A-M-G-RFKTALLTFLPPVVGGLLF---PNGFLYAIGYAGLAATIW 358 (414)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCC-----c----c-c-c-ceeeehhhHhhHHHHHHHh---HHHHHHHHHHHHHHHHHH
Confidence 777777777777666655433211 0 0 1 1 1112445666666665533 344554555555443333
Q ss_pred -HHHHHHHHHhhcccCccCCCcccCCchhhHHHHHHHHHHHHH
Q 010352 415 -YAVPIFARMVMAEQKFNAGPFYLGKASRPICLIAFLWICYTC 456 (512)
Q Consensus 415 -~~l~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 456 (512)
-.++....++.|||.+ +.+|+.+ .+.....+.+.+.+...
T Consensus 359 ~~ilP~lM~~~~Rk~~~-~~~y~v~-Gg~~~l~~~~~~g~~~i 399 (414)
T PRK10483 359 AAIVPALLARASRKRFG-SPKFRVW-GGKPMIVLILLFGVGNA 399 (414)
T ss_pred HHHHHHHHHHHHHhcCC-CCCceec-CCHHHHHHHHHHHHHHH
Confidence 3447777777775532 4678888 66665444444444433
No 45
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=99.81 E-value=9.5e-17 Score=158.41 Aligned_cols=340 Identities=14% Similarity=0.066 Sum_probs=236.6
Q ss_pred HhhhhhhHHHHHHhhhhcCCch--hHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChhhHHHhhccCCCCCchhHHHHHHH
Q 010352 33 TMTLFTGIIPLYGSSLLYAGPA--SLVWGWVVVSFFTWFVGLAMAEICSSFPTTGSLYFWAAHLASPKWGPFASWCCAWL 110 (512)
Q Consensus 33 ~~~~~~gi~~~~~~~~~~~G~~--~~~~~~ii~~l~~~~~a~~~~el~~~~p~~GG~y~~~~~~~g~~~g~~~g~~~g~~ 110 (512)
.-.| +|.+..++..-.++|.. .++++|+++++...+.+++ ..|++||.|.+.++. .||..|++.+|.
T Consensus 7 mffG-AGNlIfPp~lG~~aG~~~~~a~lgf~ltgV~lpllgl~------av~~~gG~~~~l~~~----~g~~f~~lf~~~ 75 (378)
T TIGR00796 7 LFFG-AGNIIFPPMLGLAAGEHVWTAALGFLLTGVGLPLLGLI------ALALVGGGYDSLSAR----IGKVFGILFTVI 75 (378)
T ss_pred HHHh-hhHHhhhHHHHHHhCccHHHHHHHHHHHHHHHHHHHHh------eeeecCCCHHHHHHH----hChHHHHHHHHH
Confidence 3445 77777777666666654 2778999999988888887 888999999999998 677779999998
Q ss_pred HHHHH-HHH----HHHHHHHHHHHHHHHHHHhcCCCCCCCccCchHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHH
Q 010352 111 ETIGL-IAG----MGTQAYAGSQTLQSIILLCTGTNKDGGYFAPKWLFLCMYIGLTIIWAVLNTFALEVIAFIDIISMWW 185 (512)
Q Consensus 111 ~~~~~-~~~----~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~k~~~~~~~~~~~~ 185 (512)
.++.. +.. .+..++..+ +..+++ + ..+.....+..+++..+...+++++.|...+++++++-+
T Consensus 76 ~~l~iGP~~aiPRtaa~s~e~~--i~p~~~---------~-~~~~~~l~i~siiff~i~~~l~~~~~k~~~~iGk~LTP~ 143 (378)
T TIGR00796 76 LYLTIGPLFAIPRTATVSFEMG--IAPLLH---------S-PTSLLALFIFSLIFFAVVLLLSLNPSKLIDRVGKFLTPA 143 (378)
T ss_pred HHHHHHhchhhhHHHHHHHHHH--HHhccC---------c-ccchHHHHHHHHHHHHHHHHHHcCcccHHHHhHHHHHHH
Confidence 88652 222 222222222 222221 1 011122344556666677779999999999999999999
Q ss_pred HHHHHHHHHHhhhhhccccccccccccccccccCCCCCCCchhHHHHhhhhhhhhhc-------cccccchhhh-hccCc
Q 010352 186 QVAGGLVIIIMLPLVALTTQSASYVFTHFEMSPEATGISSKPYAVILSFLVSQYSLY-------GYDSAAHLTE-ETKGA 257 (512)
Q Consensus 186 ~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~-------G~e~~~~~~~-E~k~P 257 (512)
+++.++.+++.++....... ....++ ..+ ...+..++.-..++++ |+-...++.+ |.|||
T Consensus 144 lLi~l~~lii~g~~~p~g~~--~~~~~~---------~~~-~~~f~~g~l~GY~TmD~laal~fg~iiv~~i~~~g~~~~ 211 (378)
T TIGR00796 144 LLVTLLALIIKALLWPAGPI--LAASGA---------YAS-QQAFSKGFLEGYLTMDALAALVFGIIVVNAIRSRGVTKP 211 (378)
T ss_pred HHHHHHHHHHHHHHcCCCCc--CCcccc---------ccc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCH
Confidence 99999999999987632111 000011 110 0237788888888999 9999999988 99999
Q ss_pred ccccchHHHHHH-HHHHHHHHHHHHHHHHhccChhhhhcCCCcccCCCcHHHHHHHHhhcccCCcchhHHHHHHHHHHHH
Q 010352 258 DKTGPIAILSSI-GIISIFGWALILALCFSIQDFSYLYDKSNETAGAFVPAQILYDAFHGRYHNSTGAIILLIVIWGSFF 336 (512)
Q Consensus 258 ~k~ip~ai~~~~-~~~~i~y~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 336 (512)
+|..|+.+..++ ..+...|+...++..... +.+++.+.++ +. +.+....+..+|+. +..++.+...++|+
T Consensus 212 ~~~~~~~i~~G~ia~i~l~~vY~~L~~lGa~-~~~~~~~~~~----~~---~~l~~~a~~~~G~~-G~~ll~i~v~lACL 282 (378)
T TIGR00796 212 KKITKYTIKAGLIAAVLLAFIYLSLFYLGAT-SAAAAGDAVN----GA---QILSAYSQHLFGSL-GSFLLGLIITLACL 282 (378)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-cHhhhcccCC----cH---HHHHHHHHHHcchh-HHHHHHHHHHHHHH
Confidence 999999999999 677778888888888887 5454443211 11 34444444444554 78899999999999
Q ss_pred HhHHHHHhhhhhhHHhhhcCCCCCcccccccccccCCchHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHH
Q 010352 337 FGGLSVTTSAARVVYALSRDKGIPFSSIWRQLHPKHKVPSNAVWLCAAICIILGLPILKVNVVFTAITSICTIGWVGGYA 416 (512)
Q Consensus 337 ~~~~~~~~~~sR~l~~ma~d~~lP~~~~f~~~~~~~~~P~~a~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 416 (512)
++.++...+.+ +.|+|.++| +|+.+.++...+...+.. ...++.+.++..-...+.|-
T Consensus 283 tT~iGli~~~a---------------~~f~~~~~k--~~y~~~v~~~~l~s~~ia-----~~Gl~~Ii~~~~PvL~~~YP 340 (378)
T TIGR00796 283 TTAVGLTTACS---------------EYFHKLVPK--LSYKTWVIVFTLFSFIVA-----NLGLTQIISISIPVLMIIYP 340 (378)
T ss_pred HHHHHHHHHHH---------------HHHHHhcCC--CCHHHHHHHHHHHHHHHH-----HhCHHHHHHHHHHHHHHHHH
Confidence 99999988844 566676644 899988888777776554 23567888887777777777
Q ss_pred HHHHHHHh--hcc-cCccCCCcccC
Q 010352 417 VPIFARMV--MAE-QKFNAGPFYLG 438 (512)
Q Consensus 417 l~~~~~~~--~r~-~~~~~~~~~~~ 438 (512)
+.+...+. .|| .++++|+||.+
T Consensus 341 ~~i~lill~ll~~~~~~~~~~y~~~ 365 (378)
T TIGR00796 341 LAIVLILLSFLRKLWDSKRAVYQIT 365 (378)
T ss_pred HHHHHHHHHHHHHhcCCCCCeeehH
Confidence 75554444 343 34557888876
No 46
>PRK09664 tryptophan permease TnaB; Provisional
Probab=99.79 E-value=6.3e-16 Score=153.36 Aligned_cols=392 Identities=11% Similarity=-0.049 Sum_probs=257.9
Q ss_pred chHHHHHHHHHHhhhhhhHHHHHHhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChhhHHHhhccCCCCCc
Q 010352 22 TLFKTFAISFSTMTLFTGIIPLYGSSLLYAGPASLVWGWVVVSFFTWFVGLAMAEICSSFPTTGSLYFWAAHLASPKWGP 101 (512)
Q Consensus 22 ~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~G~~~~~~~~ii~~l~~~~~a~~~~el~~~~p~~GG~y~~~~~~~g~~~g~ 101 (512)
+.+....+..|+.+| +|+...+. +.+.+|-..+....++.++++...++.+.|.+.++|+.-+....+++.+||.
T Consensus 10 ~~~gg~~iIaGT~IG-AGMLaLP~-~~a~~Gf~~s~~ll~~~w~~M~~t~LlllEv~l~~~~g~~l~tma~~~LG~~--- 84 (415)
T PRK09664 10 SAFWGVMVIAGTVIG-GGMFALPV-DLAGAWFFWGAFILIIAWFSMLHSGLLLLEANLNYPVGSSFNTITKDLIGNT--- 84 (415)
T ss_pred chhhhhHHhhhccHh-HHHHHHHH-HHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHcChH---
Confidence 677799999999999 99888775 4555665558888899999999999999999999999889999999996664
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccCchHHHHHHHHHHHHHHHHHHhchhhHHHHHHHH
Q 010352 102 FASWCCAWLETIGLIAGMGTQAYAGSQTLQSIILLCTGTNKDGGYFAPKWLFLCMYIGLTIIWAVLNTFALEVIAFIDII 181 (512)
Q Consensus 102 ~~g~~~g~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~k~~~~~~~~ 181 (512)
...+++..+.+-......++....++.+++.++.. .++..++. ..++.+.+++..+-+.|.|...|++++
T Consensus 85 -g~~i~~~~~~fl~Y~Ll~AYisggG~il~~~l~~~------~~~~i~~~---~~~llF~~~~~~~v~~gt~~vd~~nr~ 154 (415)
T PRK09664 85 -WNIISGITVAFVLYILTYAYISANGAIISETISMN------LGYHANPR---IVGICTAIFVASVLWISSLAASRITSL 154 (415)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhhh------ccCCCcHH---HHHHHHHHHHHHHHHhchhHHHHHHHH
Confidence 35555555555555556677777788888777431 12233332 244677778899999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhhccccccccccccccccccCCCCCCCchhHHHHhhhhhhhhhccccccchhhhhccCccccc
Q 010352 182 SMWWQVAGGLVIIIMLPLVALTTQSASYVFTHFEMSPEATGISSKPYAVILSFLVSQYSLYGYDSAAHLTEETKGADKTG 261 (512)
Q Consensus 182 ~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~~~E~k~P~k~i 261 (512)
+...+++.++..+.....+.. ..+. .+. . ...+.+.....+..++...+++|.=...++++....++-.|.+
T Consensus 155 l~~~~ii~f~~~~~~l~~~i~---~~~L--~~~-~--~~~~~~~~~~~i~~alPVl~~SFgfh~iIPsl~~y~~~d~~~~ 226 (415)
T PRK09664 155 FLGLKIISFVIVFGSFFFQVD---YSIL--RDA-T--STTAGTSYFPYIFMALPVCLASFGFHGNIPSLIICYGKRKDKL 226 (415)
T ss_pred HHHHHHHHHHHHHHHHhhccc---HHHH--hcC-c--cccccchHHHHHHHHHHHHHHhhhCCCcchHHHHHhCccHHHH
Confidence 999988888776666654422 1111 110 0 0010000012367788888888888889999999988766889
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHhccChhhhhcCCCcccCCCcHHHHHHHHhhcccCCcchhHHHHHHHHHHHHHhHHH
Q 010352 262 PIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNETAGAFVPAQILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLS 341 (512)
Q Consensus 262 p~ai~~~~~~~~i~y~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 341 (512)
+|+++.+..+..++|++...++...+ |.+++.+...+ +.+..+......+.. ..++...+..+...++..++..+
T Consensus 227 ~kaIl~Gs~IpLviY~~W~~~ilG~l-p~~~~~~~~~~---g~nv~~l~~s~~~~~-~~~~i~~~~~~Fa~~Ai~TSFlG 301 (415)
T PRK09664 227 IKSVVFGSLLALVIYLFWLYCTMGNI-PRESFKAIISS---GGNVDSLVKSFLGTK-QHGIIEFCLLVFSNLAVASSFFG 301 (415)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCC-CHHHHHHHHHc---CCCchHHHHHHHhhc-cChHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999988 55554321110 223334334433332 55556666666666677777766
Q ss_pred HHhhhhhhHHhhhcCCCCCcccccccccccCCchHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHH-HHHHHHHHH
Q 010352 342 VTTSAARVVYALSRDKGIPFSSIWRQLHPKHKVPSNAVWLCAAICIILGLPILKVNVVFTAITSICTIGW-VGGYAVPIF 420 (512)
Q Consensus 342 ~~~~~sR~l~~ma~d~~lP~~~~f~~~~~~~~~P~~a~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~l~~~ 420 (512)
.-.+....+.++-+.+ + +++-......++.+...++.+.. .+.|..-.+.+.... .+.-.++..
T Consensus 302 v~LGL~D~l~D~~~~~-----------~-~~~~r~~~~~ltflPPl~~al~~---P~gFl~AL~yAG~~~~il~~ilP~l 366 (415)
T PRK09664 302 VTLGLFDYLADLFKID-----------N-SHGGRFKTVLLTFLPPALLYLIF---PNGFIYGIGGAGLCATIWAVIIPAV 366 (415)
T ss_pred HHHHHHHHHHHHhCCC-----------C-ccccceeeehhhHhhhHHHHHHh---hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666665555432221 1 11111222445666666665533 234444444444433 333344777
Q ss_pred HHHhhcccCccCCCcccCCchhhHHHHHHHHHHHHHHH
Q 010352 421 ARMVMAEQKFNAGPFYLGKASRPICLIAFLWICYTCSV 458 (512)
Q Consensus 421 ~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (512)
..++.|+|. .+.+||+| .+.....+..++.+..+..
T Consensus 367 M~~~~Rk~~-~~~~y~v~-GG~~~l~~~~~~g~~ii~~ 402 (415)
T PRK09664 367 LAIKARKKF-PNQMFTVW-GGNLIPAIVILFGITVILC 402 (415)
T ss_pred HHHHHhccc-CCCCceee-CCHHHHHHHHHHHHHHHHH
Confidence 777777552 24679998 7777666666665554443
No 47
>PRK15132 tyrosine transporter TyrP; Provisional
Probab=99.77 E-value=4.5e-15 Score=148.25 Aligned_cols=385 Identities=11% Similarity=0.009 Sum_probs=262.6
Q ss_pred chHHHHHHHHHHhhhhhhHHHHHHhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChhhHHHhhccCCCCCc
Q 010352 22 TLFKTFAISFSTMTLFTGIIPLYGSSLLYAGPASLVWGWVVVSFFTWFVGLAMAEICSSFPTTGSLYFWAAHLASPKWGP 101 (512)
Q Consensus 22 ~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~G~~~~~~~~ii~~l~~~~~a~~~~el~~~~p~~GG~y~~~~~~~g~~~g~ 101 (512)
+.+...++..|+.+| +|+...+- ..+.+|........++++.++...++.+.|.+.+.|+..+....+++. +|+
T Consensus 4 ~~~g~~~li~GTaIG-AGmLaLPi-~~~~~Gf~~~~~~li~~w~~m~~t~l~l~Ev~~~~~~~~~~~~~a~~~----LG~ 77 (403)
T PRK15132 4 RTLGSIFIVAGTTIG-AGMLAMPL-AAAGVGFSVTLILLIGLWALMCYTALLLLEVYQHVPADTGLGTLAKRY----LGR 77 (403)
T ss_pred cHHHHHHHHHhcchh-HHHHHHHH-HHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHH----hCh
Confidence 567888899999999 99887775 445577766788888899999999999999988888888899999999 555
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccCchHHHHHHHHHHHHHHHHHHhchhhHHHHHHHH
Q 010352 102 FASWCCAWLETIGLIAGMGTQAYAGSQTLQSIILLCTGTNKDGGYFAPKWLFLCMYIGLTIIWAVLNTFALEVIAFIDII 181 (512)
Q Consensus 102 ~~g~~~g~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~k~~~~~~~~ 181 (512)
..+++....|.+.......++....++.+.+.++.+. +.+.+.+ ...+.+.++...+-+.|.|...|++.+
T Consensus 78 ~g~~i~~~~y~fl~y~ll~AYisg~g~il~~~l~~~~------~~~i~~~---~~~l~F~~~~~~iv~~g~~~v~~~n~~ 148 (403)
T PRK15132 78 YGQWLTGFSMMFLMYALTAAYISGAGELLASSISDWT------GISMSPT---AGVLLFTLVAGGVVCVGTSSVDLFNRF 148 (403)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHhc------cCCCChH---HHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 5588888888887777777788887777766664321 2222332 233345555566888899999999999
Q ss_pred HHHHHHHHHHHHHHhhhhhccccccccccccccccccCCCCCCCchhHHHHhhhhhhhhhccccccchhhhhccCccccc
Q 010352 182 SMWWQVAGGLVIIIMLPLVALTTQSASYVFTHFEMSPEATGISSKPYAVILSFLVSQYSLYGYDSAAHLTEETKGADKTG 261 (512)
Q Consensus 182 ~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~~~E~k~P~k~i 261 (512)
+...+++.++.+....+.... .+++ . +. ++.. .....++...+++|.=...++++....++-+|.+
T Consensus 149 L~~~~ii~~~~~~~~l~p~~~--------~~~L-~--~~-~~~~--~~~~~~iPvl~~SFgfh~iIpsl~~y~~~~~~~~ 214 (403)
T PRK15132 149 LFSAKIIFLVVMLALMMPHIH--------KVNL-L--TL-PLQQ--GLALSAIPVIFTSFGFHGSVPSIVSYMGGNIRKL 214 (403)
T ss_pred HHHHHHHHHHHHHHHHHHhcC--------HHHH-h--cC-Cccc--cHHHHHHHHHHHHhhCCcccHHHHHHhCcCHHHH
Confidence 999999887766665554321 2222 1 11 1111 1277889999999999999999999998777889
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHhccChhhhhcCCCcccCCCcHHHHHHHHhhcccCCcchhHHHHHHHHHHHHHhHHH
Q 010352 262 PIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNETAGAFVPAQILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLS 341 (512)
Q Consensus 262 p~ai~~~~~~~~i~y~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 341 (512)
+|++..+..+..++|++...+..+.. +.++..+...+ +.+. ......+.+..+.++...+..+...++..++..+
T Consensus 215 ~k~i~~Gs~i~li~yl~W~~~~lg~l-~~~~~~~~~~~---~~~~-~~~l~~l~~~~~~~~~~~~~~~fa~~Ai~TSFlG 289 (403)
T PRK15132 215 RWVFIIGSAIPLVAYIFWQLATLGSI-DSTTFMGLLAN---HAGL-NGLLQALREVVASPHVELAVHLFADLALATSFLG 289 (403)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCC-CHHHHHHHHHc---cCch-HHHHHHHHHHccChHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999 55554321110 1122 2223334443466677777788888888888888
Q ss_pred HHhhhhhhHHhhhcCCCCCcccccccccccCCchHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHH-HHHHHHHHHH
Q 010352 342 VTTSAARVVYALSRDKGIPFSSIWRQLHPKHKVPSNAVWLCAAICIILGLPILKVNVVFTAITSICTIG-WVGGYAVPIF 420 (512)
Q Consensus 342 ~~~~~sR~l~~ma~d~~lP~~~~f~~~~~~~~~P~~a~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~l~~~ 420 (512)
...+....+.++-+.+. + + +.+ ....+++.+...++.+.. .+.|....+.++.. ..+...++..
T Consensus 290 v~lgl~d~l~d~~~~~~----~---~---~~r--~~~~~l~flppli~a~~~---P~~F~~al~~aG~~~ail~~ilP~~ 354 (403)
T PRK15132 290 VALGLFDYLADLFQRRN----T---V---GGR--LQTGLITFLPPLAFALFY---PRGFVMALGYAGVALAVLALLLPSL 354 (403)
T ss_pred HHHHHHHHHHHHHccCc----c---c---cCC--chhehhhHHHHHHHHHHh---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888777776543221 1 0 111 223445555555555532 34566555555543 3444555777
Q ss_pred HHHhhcccCccCCCcccCCchhhHHHHHHHHHHHHHH
Q 010352 421 ARMVMAEQKFNAGPFYLGKASRPICLIAFLWICYTCS 457 (512)
Q Consensus 421 ~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (512)
..++.|++++ +++||.| .+.....+..+.....++
T Consensus 355 m~~~~r~~~~-~~~y~v~-gg~~~~~~v~~~G~~~i~ 389 (403)
T PRK15132 355 LVWQSRKQNP-QAGYRVK-GGRPALALVFLCGIAVIG 389 (403)
T ss_pred HHHHHhhcCC-CCCccCC-CChHHHHHHHHHHHHHHH
Confidence 7777775532 4578988 777765555555544443
No 48
>TIGR00814 stp serine transporter. The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.
Probab=99.75 E-value=4.3e-15 Score=148.81 Aligned_cols=294 Identities=11% Similarity=-0.002 Sum_probs=206.4
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHhhhhcCCchhHHHHHHHHHHHHHHHHHHHHH----HHhhcCC-CChhhHHHhhccCCC
Q 010352 24 FKTFAISFSTMTLFTGIIPLYGSSLLYAGPASLVWGWVVVSFFTWFVGLAMAE----ICSSFPT-TGSLYFWAAHLASPK 98 (512)
Q Consensus 24 ~~~~~~~~~~~~~~~gi~~~~~~~~~~~G~~~~~~~~ii~~l~~~~~a~~~~e----l~~~~p~-~GG~y~~~~~~~g~~ 98 (512)
...+....++.+| +|+...+.. +|.. .+++++++.+++++.++.+.. .....|+ +.+.+.++++.
T Consensus 6 ~~w~~~l~gt~IG-aGiL~LP~~----ag~~-G~i~~li~~l~~~pl~~~~~~ll~~~~l~~~~p~~~i~~~~~~~---- 75 (397)
T TIGR00814 6 TGWMLGLYGTAIG-AGVLFLPIQ----AGLG-GLWVLVLMAIIAYPLTYFGHRALARFLLSSKNPCEDITEVVEEH---- 75 (397)
T ss_pred hhHHHHHHHHHHH-HHHHHHHHH----HHhC-HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHH----
Confidence 3456677788888 999888875 3444 566777777776666665554 4333444 67999999999
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccCchHHHHHHHHHHHHHHHHHHhchhhHHHHH
Q 010352 99 WGPFASWCCAWLETIGLIAGMGTQAYAGSQTLQSIILLCTGTNKDGGYFAPKWLFLCMYIGLTIIWAVLNTFALEVIAFI 178 (512)
Q Consensus 99 ~g~~~g~~~g~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~k~~~~~ 178 (512)
+|+..|.+.++.|++........++....+.+.+++.... ..+.+ ......+.+++++..++..|.|...|+
T Consensus 76 fGk~~G~ii~~lY~~~~~~i~~aY~~~~~~~~~~fl~~~~------~~~~p--~~~i~~lilv~il~~iv~~G~~~i~r~ 147 (397)
T TIGR00814 76 FGKNWGILITLLYFFAIYPILLIYSVAITNDSASFLVNQL------GTAPP--LRGLLSLALILILVAIMSFGEKLLFKI 147 (397)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc------CCCCc--HHHHHHHHHHHHHHHHHHhcHHHHHHH
Confidence 6666788999999999888888888888888877775411 11122 334566677777789999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhccccccccccccccccccCCCCCCCchhHHHHhhhhhhhhhccccccchhh----hhc
Q 010352 179 DIISMWWQVAGGLVIIIMLPLVALTTQSASYVFTHFEMSPEATGISSKPYAVILSFLVSQYSLYGYDSAAHLT----EET 254 (512)
Q Consensus 179 ~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~~----~E~ 254 (512)
+.++...+++.++.+.+..+.... .+++...|... +....+..++...+|+|.|+|..++++ +|.
T Consensus 148 ~~il~~~~ii~l~~l~~~lip~~~--------~~~L~~~p~~~---~~~~~i~~alpv~~~SF~~~~iIssl~~~~~~~~ 216 (397)
T TIGR00814 148 MGPLVFPLVLILVLLSLYLIPHWN--------GANLTTFPSFN---GFLKTLWLTIPVMVFSFNHSPIISSFAISYREEY 216 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcC--------HHHHhcCCccc---chHHHHHHHHHHHHHHHHccccchHHHHHHHHHc
Confidence 999999988887777777765421 22220101111 113458999999999999999999998 667
Q ss_pred cCc---ccccchHHHHHHHHHHHHHHHHHHHHHHhccChhhhhcCCCcccCCCcHHHHHHHHhhcccCCcchhHHHHHHH
Q 010352 255 KGA---DKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNETAGAFVPAQILYDAFHGRYHNSTGAIILLIVI 331 (512)
Q Consensus 255 k~P---~k~ip~ai~~~~~~~~i~y~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 331 (512)
+|| +|...|++..+..+..++|+....+..... ++++..+...+ + . +. ...+.+..+.+....+..+..
T Consensus 217 ~~~~~~~~k~~k~i~~~~~i~~~~y~~~~~s~~~~l-~~~~~~~a~~~---n--i-s~-Ls~l~~~~~~~~i~~~~~~f~ 288 (397)
T TIGR00814 217 GDKEFAERKCLRIMKGASLILVATVMFFVFSCVLSL-SPAEAVAAKEQ---N--I-SI-LSYLANHFNAAWISYAGPIVA 288 (397)
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-CHHHHHHHHHc---C--c-HH-HHHHHhhcCCcHHHHHHHHHH
Confidence 655 577889999999999999999999999999 66766543320 1 1 22 233333335565666666666
Q ss_pred HHHHHHhHHHHHhhhhhhHHhhh
Q 010352 332 WGSFFFGGLSVTTSAARVVYALS 354 (512)
Q Consensus 332 ~~~~~~~~~~~~~~~sR~l~~ma 354 (512)
.++..++..+...+....+..+-
T Consensus 289 ~~Ai~tSFlG~~lg~~e~l~~l~ 311 (397)
T TIGR00814 289 IVAISKSFFGHYLGAREGLNGIV 311 (397)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHH
Confidence 66666777776666666666655
No 49
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]
Probab=99.66 E-value=5.8e-13 Score=134.76 Aligned_cols=258 Identities=13% Similarity=-0.016 Sum_probs=203.2
Q ss_pred ccccccchHHHHHHHHHHhhhhhhHHHHHHhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC-hhhHHHhhc
Q 010352 16 ELRREMTLFKTFAISFSTMTLFTGIIPLYGSSLLYAGPASLVWGWVVVSFFTWFVGLAMAEICSSFPTTG-SLYFWAAHL 94 (512)
Q Consensus 16 ~l~r~l~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~G~~~~~~~~ii~~l~~~~~a~~~~el~~~~p~~G-G~y~~~~~~ 94 (512)
..+++-+..+.+....++.+| +|+...+. +...+|-...+...++++.++....+++.|...+.|+.. +.+.-+++.
T Consensus 4 ~~~~~~s~~~~vl~l~gT~IG-AGvL~lP~-a~~~~G~~~~l~~l~i~~~~t~~s~~~l~~~~~~~~~~~~~~~~~~~~~ 81 (415)
T COG0814 4 SMKKTSSDLGGVLILAGTAIG-AGVLFLPV-AFGGGGFWPGLLLLIIAWPLTYLSLLLLLEALLSSPNGKASITSLVEDY 81 (415)
T ss_pred cccCCcchHHHHHHHHccccc-cchhhhhH-HhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHH
Confidence 445677888999999999999 99877664 777788777888889999999999999999999999984 999999999
Q ss_pred cCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccCchHHHHHHHHHHHHHHHHHHhchhhH
Q 010352 95 ASPKWGPFASWCCAWLETIGLIAGMGTQAYAGSQTLQSIILLCTGTNKDGGYFAPKWLFLCMYIGLTIIWAVLNTFALEV 174 (512)
Q Consensus 95 ~g~~~g~~~g~~~g~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~k~ 174 (512)
+ ||.++++.+..+.+.......++....++.+.+.++... ..++....+..+++...+..+.+.|.+.
T Consensus 82 ~----G~~~~~li~~s~~~~~~~~~~aY~~~~g~~l~~~~~~~~--------~~~~~~r~~~~lif~~~~~~l~~~~~~~ 149 (415)
T COG0814 82 L----GKKGGILIGLSYFFALYGLLVAYIVGIGNLLASFLGNQF--------GLNPLPRKLGSLIFALVLAFLSWLGTLA 149 (415)
T ss_pred h----CcchHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHhhc--------ccCCcchHHHHHHHHHHHHHHHHhchhH
Confidence 4 454588999999999888889999999999998886411 1111334455556666777799999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhccccccccccccccccccCCCCCCCchhHHHHhhhhhhhhhccccccchhhhhc
Q 010352 175 IAFIDIISMWWQVAGGLVIIIMLPLVALTTQSASYVFTHFEMSPEATGISSKPYAVILSFLVSQYSLYGYDSAAHLTEET 254 (512)
Q Consensus 175 ~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~~~E~ 254 (512)
..|....+...+++.+++++.......... ..... |... +.....+..++...+++|.+....+.+..|.
T Consensus 150 ~lk~ts~l~~~~v~~~~~l~~~~~~~~~~~-----~l~~~---~~~~--~~~~~~~~~~ipv~vfsF~~h~~i~si~~~~ 219 (415)
T COG0814 150 VLKITSLLVFGKVIYLVLLVVYLIPHWNPA-----NLFAL---PSAS--QSFWKYLLLAIPVFVFSFGFHGNIPSLVNYM 219 (415)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccCHH-----HHhcc---cccc--hhhHHHHHHHhhHHHhhhhCCccchHHHHHh
Confidence 999999999999988888887776553111 11111 0111 1223458999999999999999999999999
Q ss_pred cCcccc-cchHHHHHHHHHHHHHHHHHHHHHHhccC--hhhhhcCC
Q 010352 255 KGADKT-GPIAILSSIGIISIFGWALILALCFSIQD--FSYLYDKS 297 (512)
Q Consensus 255 k~P~k~-ip~ai~~~~~~~~i~y~~~~~~~~~~~~~--~~~l~~~~ 297 (512)
|+++|+ ++|++..+..+..++|+........+.++ .+++.++.
T Consensus 220 ~~~~~~~~~k~~~~~~~~~~vlyi~~~~~~~~~~~~~~~~~il~~~ 265 (415)
T COG0814 220 RKNSKKAVRKAILIGSLIALVLYILVGFFVFGCFGSLVFGNILAAK 265 (415)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHcc
Confidence 988877 99999999999999999999999999853 34555443
No 50
>PRK13629 threonine/serine transporter TdcC; Provisional
Probab=99.64 E-value=4.3e-12 Score=126.25 Aligned_cols=369 Identities=9% Similarity=-0.005 Sum_probs=238.4
Q ss_pred HHHHHHHhhhhhhHHHHHHhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCChhhHHHhhccCCCCCchhHH
Q 010352 27 FAISFSTMTLFTGIIPLYGSSLLYAGPASLVWGWVVVSFFTWFVGLAMAEICSSF-PTTGSLYFWAAHLASPKWGPFASW 105 (512)
Q Consensus 27 ~~~~~~~~~~~~gi~~~~~~~~~~~G~~~~~~~~ii~~l~~~~~a~~~~el~~~~-p~~GG~y~~~~~~~g~~~g~~~g~ 105 (512)
+....|+.+| +|+...+- ..+.+|....++..++++.++...++.+.|..... |+..+....+++.+|| ..+.
T Consensus 25 ~l~l~GTAIG-AGmLfLPI-~~g~~Gf~p~lillll~~p~m~~s~l~L~e~~L~~~~~~~~i~~v~~~~lG~----~g~~ 98 (443)
T PRK13629 25 TLGLFGTAIG-AGVLFFPI-RAGFGGLIPILLMLVLAYPIAFYCHRALARLCLSGSNPSGNITETVEEHFGK----TGGV 98 (443)
T ss_pred HHHHHHHHHh-HHHHHHHH-HHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCHHHHHHHHcCh----hHHH
Confidence 3556667777 88777764 55567777688888889999999999999999988 5566888999999554 4577
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccCchHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHH
Q 010352 106 CCAWLETIGLIAGMGTQAYAGSQTLQSIILLCTGTNKDGGYFAPKWLFLCMYIGLTIIWAVLNTFALEVIAFIDIISMWW 185 (512)
Q Consensus 106 ~~g~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~k~~~~~~~~~~~~ 185 (512)
+.+..|.+........+.....+.+.+++.. ....+.....+.+++++.++..+...|.|...|++.++...
T Consensus 99 i~~ilYff~ly~ll~aY~~~itn~l~sfl~~--------ql~~~~~~r~l~slifv~~l~~iv~~G~~~v~kv~~~Lv~~ 170 (443)
T PRK13629 99 VITFLYFFAICPLLWIYGVTITNTFMTFWEN--------QLGFAPLNRGFVALFLLLLMAFVIWFGKDLMVKVMSYLVWP 170 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------hcCcCCccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 8888888886666666766666666664432 11111113456777888889999999999999999999999
Q ss_pred HHHHHHHHHHhhhhhccccccccccccccccccCCCCCCCchhHHHHhhhhhhhhhccccccchhhhh----cc-----C
Q 010352 186 QVAGGLVIIIMLPLVALTTQSASYVFTHFEMSPEATGISSKPYAVILSFLVSQYSLYGYDSAAHLTEE----TK-----G 256 (512)
Q Consensus 186 ~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~~~E----~k-----~ 256 (512)
+++.++.+.+..+.+....+-.+...+.. |+..+. +....++.++...+++|.=...++.++.. .+ |
T Consensus 171 ~i~~l~~l~~~LiP~w~~~~L~~~~~~~~---~~~~~~-~~~~~l~~~iPv~v~SF~f~~iIssl~~y~r~~y~~~~~~~ 246 (443)
T PRK13629 171 FIASLVLISLSLIPYWNSAVIDQVDLGSL---SLTGHD-GILVTVWLGISIMVFSFNFSPIVSSFVVSKREEYEKDFGRD 246 (443)
T ss_pred HHHHHHHHHHHHHHHcCHHHHhcCccccc---cccccc-cHHHHHHHHHHHHHHHHhccccchHHHHHHHHHhccccccc
Confidence 99999999888887643221111000000 010000 10124778888899999888888777766 42 2
Q ss_pred -cccccchHHHHHHHHHHHHHHHHHHHHHHhccChhhhhcCCCcccCCCcHHHHHHHHhhcccCC-----cchhHHHHHH
Q 010352 257 -ADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNETAGAFVPAQILYDAFHGRYHN-----STGAIILLIV 330 (512)
Q Consensus 257 -P~k~ip~ai~~~~~~~~i~y~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~-----~~~~~~~~~~ 330 (512)
.+|...|++..+..+..++|+...++..+.. +++++.+...+ +.+..+.+.+.++...+. +....+..+.
T Consensus 247 ~a~~k~~rii~~gs~i~lv~y~fwv~S~~gsL-s~~~l~~a~~q---n~s~Ls~La~~~~~~~~~~~~~~~~i~~~~~if 322 (443)
T PRK13629 247 FTERKCSQIISRASMLMVAVVMFFAFSCLFTL-SPQNMAEAKAQ---NIPVLSYLANHFASMTGTKSTFAITLEYAASII 322 (443)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CHHHHHHHHHh---CCcHHHHHHHHhhhcccccccchhHHHHHHHHH
Confidence 2477889999999999999999999999999 66776543321 334445566666543233 4456666666
Q ss_pred HHHHHHHhHHHHHhhhhhhHHhhhcC-CCCCcccccccccccCCchHHHHHHHHHHHHHHhccccccHHHHHHHHHHHH-
Q 010352 331 IWGSFFFGGLSVTTSAARVVYALSRD-KGIPFSSIWRQLHPKHKVPSNAVWLCAAICIILGLPILKVNVVFTAITSICT- 408 (512)
Q Consensus 331 ~~~~~~~~~~~~~~~~sR~l~~ma~d-~~lP~~~~f~~~~~~~~~P~~a~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~- 408 (512)
..++..++..+...+..-.+..+.++ ..-+ + =.|.| ++..-....++..+.+....... .+.++-+-++++
T Consensus 323 a~~AI~TSFlGv~LGl~E~l~gl~~~~~~~~--~-~~~~~-~~~~~~~~~~~~~~~~w~~~~~n---p~il~~i~~~~gP 395 (443)
T PRK13629 323 ALVAIFKSFFGHYLGTLEGLNGLILKFGYKG--D-KTKVS-LGKLNTISMIFIMGSTWVVAYAN---PNILDLIEAMGAP 395 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--c-ccccC-HHHHHHHHHHHHHHHHHHHHHhC---ccHHHHHHHhhhH
Confidence 66777777777777777766666643 1111 1 01333 33333344444444444444322 123333333433
Q ss_pred HHHHHHHHHHHHHHHh
Q 010352 409 IGWVGGYAVPIFARMV 424 (512)
Q Consensus 409 ~~~~~~~~l~~~~~~~ 424 (512)
+...+.++++..+..+
T Consensus 396 iia~il~l~P~y~i~k 411 (443)
T PRK13629 396 IIASLLCLLPMYAIRK 411 (443)
T ss_pred HHHHHHHHHHHHHHHc
Confidence 5555666667655543
No 51
>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. Spore germination protein (amino acid permease) is involved in the response to the germinative mixture of L-asparagine, glucose, fructose and potassium ions (AFFK). These proteins could be amino acid transporters.; GO: 0009847 spore germination, 0016021 integral to membrane
Probab=99.41 E-value=8.5e-10 Score=108.77 Aligned_cols=286 Identities=14% Similarity=0.084 Sum_probs=206.1
Q ss_pred ccchHHHHHHHHHHhhhhhhHHHHHHhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChhhHHHhhccCCCC
Q 010352 20 EMTLFKTFAISFSTMTLFTGIIPLYGSSLLYAGPASLVWGWVVVSFFTWFVGLAMAEICSSFPTTGSLYFWAAHLASPKW 99 (512)
Q Consensus 20 ~l~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~G~~~~~~~~ii~~l~~~~~a~~~~el~~~~p~~GG~y~~~~~~~g~~~ 99 (512)
|++..|...+.+..+.| .++...+....+.+| . +|++.+++++..+...+.+..+.+++|+. ....+.++. +
T Consensus 1 kIS~~Q~~~l~~~~~~g-~~~l~~p~~l~~~~~-d-~Wi~~ll~~~~~l~~~~l~~~l~~~~p~~-~l~~~~~~~----~ 72 (320)
T PF03845_consen 1 KISPRQLFFLLISSIIG-TGILFLPAILAEQAG-D-AWISVLLGGLIGLLLALLIYYLLKRFPGK-TLVEISEKL----F 72 (320)
T ss_pred CcCHHHHHHHHHHHHHH-HHHHHHHHHHHHHcC-C-cHHHHHHHHHHHHHHHHHHHHHHHHCCCC-CHHHHHHHH----h
Confidence 57889999999999998 888888888777776 4 88999999999999999999999999875 678999999 6
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccCchHHHHHHHHHHHHHHHHHHhchhhHHHHHH
Q 010352 100 GPFASWCCAWLETIGLIAGMGTQAYAGSQTLQSIILLCTGTNKDGGYFAPKWLFLCMYIGLTIIWAVLNTFALEVIAFID 179 (512)
Q Consensus 100 g~~~g~~~g~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~k~~~~~~ 179 (512)
||+.|.+.+..+.+.+....+......++.++..+.+ ......+...++.........|.+..+|.+
T Consensus 73 Gk~lg~ii~~~~~l~~l~~~~~~lr~~~~~i~~~~lp-------------~TP~~~i~~~~ll~~~y~a~~G~e~i~R~~ 139 (320)
T PF03845_consen 73 GKWLGKIINLLYILYFLLISALVLREFSEFIKTYLLP-------------ETPIWVIILLFLLVAAYAARKGIEVIARVA 139 (320)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-------------cCCHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 6667888888888888888888888888888875422 122334455666778888999999999977
Q ss_pred HHHHHHHHHHHHHHHHhhhhhccccccccccccccccccCCCCCCCchhHHHHhhhhhhhhhccccccchhhhhccCccc
Q 010352 180 IISMWWQVAGGLVIIIMLPLVALTTQSASYVFTHFEMSPEATGISSKPYAVILSFLVSQYSLYGYDSAAHLTEETKGADK 259 (512)
Q Consensus 180 ~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~~~E~k~P~k 259 (512)
.+.....++..+.+.....- +. ++++. .+-...|+. .++.+.....+.|.|.|....+...+|||+|
T Consensus 140 ~~~~~~~~i~~~~i~~~~~~---~~-----~~~~l-~P~~~~g~~----~i~~~~~~~~~~~~~~~~~l~~~p~~~~~~~ 206 (320)
T PF03845_consen 140 EILFPIFLILLLLILLLSIP---NI-----DWDNL-LPVLESGIK----PILKGSLVISFPFGGIEILLFLFPFVKDKKK 206 (320)
T ss_pred HHHHHHHHHHHHHHHHHhcc---cC-----CHHHe-eCcccCChH----HHHHHHHHHHHHHHHHHHHHHHHHHcCCchH
Confidence 66666655554444333321 11 12222 100223333 3788888888999999999999999999755
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHhccChhhhhcCCCcccCCCcHHHHHHHHhhcccCCcc---hhHHHHHHHHHHHH
Q 010352 260 TGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNETAGAFVPAQILYDAFHGRYHNST---GAIILLIVIWGSFF 336 (512)
Q Consensus 260 ~ip~ai~~~~~~~~i~y~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~---~~~~~~~~~~~~~~ 336 (512)
..|....+.....++|........... ++++..+. ..|..+..... +- + +. ...++...-+.+.+
T Consensus 207 -~~k~~~~~~~~~~~~~~~~~~~~i~vf-G~~~~~~~------~~P~~~~~~~i-~i--~-~fieRld~~~i~~w~~~~~ 274 (320)
T PF03845_consen 207 -LKKSLLIAILISGLFLLFIIFITIGVF-GPELAKKL------TYPVLELARSI-EI--G-DFIERLDSIFILIWIIGIF 274 (320)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHhce------ecHHHHHHHHh-HH--H-HHHHHHHHHHHHHHHHHHH
Confidence 789999999999999999988888888 65655443 23544433222 10 1 01 23344444455666
Q ss_pred HhHHHHHhhhhhhHH
Q 010352 337 FGGLSVTTSAARVVY 351 (512)
Q Consensus 337 ~~~~~~~~~~sR~l~ 351 (512)
......++..++.+.
T Consensus 275 ~~~~~~~~~~~~~~~ 289 (320)
T PF03845_consen 275 IKISLYLYAASEGLS 289 (320)
T ss_pred HHHHHHHHHHHHHHH
Confidence 666777777777664
No 52
>KOG1303 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=99.34 E-value=1.5e-09 Score=109.28 Aligned_cols=356 Identities=10% Similarity=0.097 Sum_probs=216.7
Q ss_pred cccccchHHHHHHHHHHhhhhhhHHHHHHhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCh-----hhHHH
Q 010352 17 LRREMTLFKTFAISFSTMTLFTGIIPLYGSSLLYAGPASLVWGWVVVSFFTWFVGLAMAEICSSFPTTGS-----LYFWA 91 (512)
Q Consensus 17 l~r~l~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~G~~~~~~~~ii~~l~~~~~a~~~~el~~~~p~~GG-----~y~~~ 91 (512)
.+|.-++++...-.++.++| .|+...+ .++.+.|-.+-+...++.+++...+++...+.-+.++.-.| .-+-+
T Consensus 34 ~~~~~s~~~a~~~~i~~~~G-~gvLsLP-~A~~~lGW~~G~~~Ll~~~iit~YT~~LL~~~~~~~~~~~~~r~~~Y~dl~ 111 (437)
T KOG1303|consen 34 PSRGGSWWQAAFHIINALIG-AGVLSLP-YALAQLGWISGIVILLLFAIITLYTATLLSRCWEMHEAVPGKRRYRYPDLG 111 (437)
T ss_pred cCCCCcceehhhheehhhhh-hhhhhhH-HHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccCCChHHHH
Confidence 47789999999999999998 8877766 78888888755778888888888998888898888888778 77788
Q ss_pred hhccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCc-cC-chHHHHHHHHHHHHHHHHHHh
Q 010352 92 AHLASPKWGPFASWCCAWLETIGLIAGMGTQAYAGSQTLQSIILLCTGTNKDGGY-FA-PKWLFLCMYIGLTIIWAVLNT 169 (512)
Q Consensus 92 ~~~~g~~~g~~~g~~~g~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~i~~~~~~~~~~~~~ 169 (512)
++++|++. -.++++...+........+.+..++.+..+++... .+. .. +.......+++.+.... +
T Consensus 112 ~~afG~~~----~~iv~~~~~~~~fg~~v~y~il~~~~L~~~~~~~~-----~~~~~l~~~~f~iif~~i~~~~s~---l 179 (437)
T KOG1303|consen 112 QAAFGPKG----RLLVSVLQYLELFGICVVYIILAGDNLKALFPIVS-----LNDNSLDKQYFIIIFGLIVLPLSQ---L 179 (437)
T ss_pred HHHhCCCc----eEeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-----CccccccceehhhhHHHHHHHHHH---C
Confidence 88855543 45788888888888888888888999988887622 111 11 11222233333333333 3
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccccccccccccCCCCCCCchhHHHHhhhhhhhhhccccccch
Q 010352 170 FALEVIAFIDIISMWWQVAGGLVIIIMLPLVALTTQSASYVFTHFEMSPEATGISSKPYAVILSFLVSQYSLYGYDSAAH 249 (512)
Q Consensus 170 ~g~k~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~ 249 (512)
........+.....+..+.........+........... .+. . +..+.+. .+.++....|+|.|.-...+
T Consensus 180 p~~~~l~~~S~~~avmS~~~a~~~~~~g~~~g~~~~~~~---~~~-~--~~~~~~~----~f~a~g~iaFaf~gH~v~pe 249 (437)
T KOG1303|consen 180 PNFHSLSYLSLVGAVMSTLYAVILIVLGIADGVGFCAPS---GGY-L--DLGTIPT----VFTALGIIAFAYGGHAVLPE 249 (437)
T ss_pred CCcchhHHHHHHHHHHHHHHHHHHHHHhhccccccCCcc---cCc-c--cCCCCcc----hhhhhhheeeeecCCeeeee
Confidence 333444444444444444444444444444321111110 111 0 1111111 16778888899999999999
Q ss_pred hhhhccCcccccchHHHHHHHHHHHHHHHHHHHHHHhccChhhhhcCCCcccCCCcHHHHHHHHhhcccCCcchhHHHHH
Q 010352 250 LTEETKGADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNETAGAFVPAQILYDAFHGRYHNSTGAIILLI 329 (512)
Q Consensus 250 ~~~E~k~P~k~ip~ai~~~~~~~~i~y~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 329 (512)
+...+|+|+| ++|+...+..++..+|+..+.......++ ...+-+...++ .+.|.....++
T Consensus 250 Iq~tMk~p~~-f~~~~lis~~~~~~~y~~vai~GY~aFG~---------------~~~~~il~s~~---~p~~~~~~ani 310 (437)
T KOG1303|consen 250 IQHTMKSPPK-FKKALLISYIIVTFLYFPVAIIGYWAFGD---------------SVPDNILLSLQ---PPTWLIALANI 310 (437)
T ss_pred hHhhcCCchh-hhhHHHHHHHHHHHHHHHHHHhhhhhhcc---------------ccchhhhhccc---CchhHHHHHHH
Confidence 9999999988 99999999999999999999887777621 11111222221 35556666667
Q ss_pred HHHHHHHHhHHHHHhhhhhhHHhhhcCCCCCccccccc-ccccCCchHHHHHHHHHHHHHHhccccccHHHHHHHHHHHH
Q 010352 330 VIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQ-LHPKHKVPSNAVWLCAAICIILGLPILKVNVVFTAITSICT 408 (512)
Q Consensus 330 ~~~~~~~~~~~~~~~~~sR~l~~ma~d~~lP~~~~f~~-~~~~~~~P~~a~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~ 408 (512)
++.+-.+++...+.....-...++.+... +.+.+ .+.+ +.=.+...+....-+...+. .|+.+.++.+
T Consensus 311 ~i~~h~i~s~~i~a~pl~~~~E~~~~~~~----~~~~~~~~~~-R~~~Rt~~v~~~~~vA~~~P------fFg~l~~lvG 379 (437)
T KOG1303|consen 311 LIVLHLIGSYQIYAQPLFDVVEKLIGVKH----PDFKKRSLVL-RLLVRTFFVAVTTFVALSFP------FFGDLLSLVG 379 (437)
T ss_pred HHHHHHhhhhhhhhcchHHHHHHHhccCC----ccccccccce-eeehhhHHHHHHHHHHHhcc------ccHhHHHHHH
Confidence 77777776666555544444444333222 11222 1111 12222222222222222332 3344444433
Q ss_pred --HHHHHHHHHHHHHHHhhc
Q 010352 409 --IGWVGGYAVPIFARMVMA 426 (512)
Q Consensus 409 --~~~~~~~~l~~~~~~~~r 426 (512)
......+.+++..++..+
T Consensus 380 a~~~~p~t~ilP~~~yl~~~ 399 (437)
T KOG1303|consen 380 AFLFWPLTFILPCLMYLLIK 399 (437)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 345567778888888773
No 53
>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups. One such group is the sodium/alanine symporter family, the members of which transport alanine in association with sodium ions. These transporters are believed to possess 8 transmembrane (TM) helices [, ], forming a channel or pore through the cytoplasmic membrane, the interior face being hydrophilic to allow the passage of alanine molecules and sodium ions []. This family is restricted to the bacteria and archaea, examples are the alanine carrier protein from the Bacillus PS3 (Thermophilic bacterium PS-3); the D-alanine/glycine permease from Pseudoalteromonas haloplanktis (Alteromonas haloplanktis); and the hypothetical protein yaaJ from Escherichia coli.; GO: 0005283 sodium:amino acid symporter activity, 0006814 sodium ion transport, 0016020 membrane
Probab=99.16 E-value=5.6e-08 Score=96.66 Aligned_cols=308 Identities=16% Similarity=0.166 Sum_probs=183.3
Q ss_pred CcccccccchHHHHHHHHHHhhhhhhHHHHHHhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCC-------CCh
Q 010352 14 KQELRREMTLFKTFAISFSTMTLFTGIIPLYGSSLLYAGPASLVWGWVVVSFFTWFVGLAMAEICSSFPT-------TGS 86 (512)
Q Consensus 14 ~~~l~r~l~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~G~~~~~~~~ii~~l~~~~~a~~~~el~~~~p~-------~GG 86 (512)
+++-+++++.++.+..+++..+| .|=......+...+||....|.|+.+ ++...+.++=.-|+.+|++ .||
T Consensus 12 ~~~~~g~iS~fqA~~~ala~~vG-~GNI~GVa~AI~~GGPGAiFWMWi~a-~~Gmatk~~E~~La~~yR~~~~~G~~~GG 89 (416)
T PF01235_consen 12 KKEEEGGISPFQALCTALAGTVG-TGNIAGVATAIAIGGPGAIFWMWISA-LLGMATKYAEVTLAQKYREKDEDGEYRGG 89 (416)
T ss_pred CCCCCCCcChHHHHHHHHHhccC-cchHHHHHHHHHhhchhHHHHHHHHH-HHHHHHHHHHHHHHHHheEECCCCCEeec
Confidence 34445689999999999999988 77777777788999999666666655 4555555555555665542 489
Q ss_pred hhHHHhhccCCCCCchhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCCCCCCccCchHHHHHHHHHHHHHHH
Q 010352 87 LYFWAAHLASPKWGPFASWCCAWLETIGLIAG-MGTQAYAGSQTLQSIILLCTGTNKDGGYFAPKWLFLCMYIGLTIIWA 165 (512)
Q Consensus 87 ~y~~~~~~~g~~~g~~~g~~~g~~~~~~~~~~-~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 165 (512)
...|.+|.+++|+ .+.+.+.+....+... ....+-..++.+++. +..++ ...++++.++..
T Consensus 90 P~yyi~~gl~~k~---la~~fai~~~~~~~~~~~~~Q~nsi~~~~~~~------------f~i~~---~~~gi~l~~l~~ 151 (416)
T PF01235_consen 90 PMYYIEKGLGSKW---LAILFAIFLIIAFGIGFNMVQANSIADALSSA------------FGIPP---WITGIILAILVA 151 (416)
T ss_pred HHHHHHHHhccch---HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh------------ccccH---HHHHHHHHHHHH
Confidence 9999999988765 4544444433332222 223333333333322 22343 345566667778
Q ss_pred HHHhchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccc--cccccccccCCCCCCCchhH--HH----Hhhhhh
Q 010352 166 VLNTFALEVIAFIDIISMWWQVAGGLVIIIMLPLVALTTQSASY--VFTHFEMSPEATGISSKPYA--VI----LSFLVS 237 (512)
Q Consensus 166 ~~~~~g~k~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~--~~----~~~~~~ 237 (512)
.+.+-|+|..+++...+.-++.+..++.++..+....+.-+.-+ .+++. . ++....++..| +. .++.=.
T Consensus 152 ~vi~GGikrI~~v~~~lVP~Ma~~Yi~~~l~ii~~n~~~ip~~~~~If~~A-F--~~~aa~GG~~G~~i~~ai~~Gv~Rg 228 (416)
T PF01235_consen 152 LVIFGGIKRIAKVSEKLVPFMAILYILGGLIIIIINIDQIPAAFSLIFSSA-F--TPKAAFGGFAGSTIMMAIRQGVARG 228 (416)
T ss_pred HHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH-c--CCccchhhHHHHHHHHHHHHhhhhh
Confidence 88899999999999999999888888888877776543322211 11211 1 21111111111 11 122222
Q ss_pred hhhh---ccccccchhhhhccCcccccchHHHHHHHHHHHHHHHHHHHHHHhccChhhhhcCCCcccCCCcHHHHHHHHh
Q 010352 238 QYSL---YGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNETAGAFVPAQILYDAF 314 (512)
Q Consensus 238 ~~~f---~G~e~~~~~~~E~k~P~k~ip~ai~~~~~~~~i~y~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 314 (512)
+|+= .|....++-+.|+|+|.|.=-.++.-..+=..++-.+..+++...- .+....+ ..-.+....++
T Consensus 229 ~fSNEAG~Gsa~~a~a~a~~~hP~~QGl~~~~~vFiDTiiVCt~TalvIl~tG-~~~~~~~--------~~g~~l~~~Af 299 (416)
T PF01235_consen 229 LFSNEAGLGSAPIAHAAAETDHPVRQGLVQMFEVFIDTIIVCTITALVILVTG-VWSWGSG--------LEGAALTQAAF 299 (416)
T ss_pred hccCCCCCChhHHHHHHhcCCCcHHHeeeeeehHhHHHHHHHHHHHHHhhccC-CCCCCCc--------chHHHHHHHHH
Confidence 2222 4555566677788999875444443333323333434444433322 2221111 11124455566
Q ss_pred hcccCCcchhHHHHHHHHHHHHHhHHHHHhhhhhhHHhhh
Q 010352 315 HGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALS 354 (512)
Q Consensus 315 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~ma 354 (512)
+..+| ++...++.+++++..+++..++.+..-|.+.-+.
T Consensus 300 ~~~~g-~~g~~~v~i~l~lFafTTilg~~~yge~~~~yl~ 338 (416)
T PF01235_consen 300 STVLG-SWGPYFVAIALFLFAFTTILGWYYYGEKCAEYLF 338 (416)
T ss_pred HHhhh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 65545 4478889999999999999999999988876554
No 54
>PRK11375 allantoin permease; Provisional
Probab=99.06 E-value=2.8e-06 Score=88.06 Aligned_cols=251 Identities=12% Similarity=0.031 Sum_probs=124.2
Q ss_pred CCCcccccccchHHHHHHHHHHhhhhhhHHHHHHhhhhcCCc--hhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC-hhh
Q 010352 12 GYKQELRREMTLFKTFAISFSTMTLFTGIIPLYGSSLLYAGP--ASLVWGWVVVSFFTWFVGLAMAEICSSFPTTG-SLY 88 (512)
Q Consensus 12 ~~~~~l~r~l~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~G~--~~~~~~~ii~~l~~~~~a~~~~el~~~~p~~G-G~y 88 (512)
+.-++.+|+-++++.+.+=.+............+ .+. .|- ..++++.+++.++........+..+ ++.| +..
T Consensus 18 ~pvp~~~Rt~~~~~~~~~W~g~~~~i~~~~~~g~-~l~-~GLs~~~ai~ai~lG~~i~~~~~~l~g~~G---~~~Gl~~~ 92 (484)
T PRK11375 18 LPKTQSQRTWKTFNYFTLWMGSVHNVPNYVMVGG-FFI-LGLSTFSIMLAIILSAFFIAAVMVLNGAAG---SKYGVPFA 92 (484)
T ss_pred CcCCccccCCcHHHHHHHHHHHhccHHHHHHHHH-HHH-ccchHHHHHHHHHHHHHHHHHHHHHhcccc---cccCCChh
Confidence 3334456778998888887776654223211221 222 222 2255555555444443333334343 4444 466
Q ss_pred HHHhhccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CCCCCc--cCchHHHHHHHHHHHHHH
Q 010352 89 FWAAHLASPKWGPFASWCCAWLETIGLIAGMGTQAYAGSQTLQSIILLCTGT--NKDGGY--FAPKWLFLCMYIGLTIIW 164 (512)
Q Consensus 89 ~~~~~~~g~~~g~~~g~~~g~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~~~~~~--~~~~~~~~~i~~~~~~~~ 164 (512)
...|..+|.+-.++.+++.++ +..+...+......++.+..++....+. +...+. ..-+.......+++.++.
T Consensus 93 v~sR~sFG~~Gs~l~~~~rai---~~~igW~~vqt~~~g~al~~~l~~i~~~~~~~~~~~~~~g~~~~~~i~~~i~~~l~ 169 (484)
T PRK11375 93 MILRASYGVRGALFPGLLRGG---IAAIMWFGLQCYAGSLALLILIGKIWPGFLTLGGDFTLLGLSLPGLITFLIFWLVN 169 (484)
T ss_pred HhHHHHHccccchHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCCcHHHHHHHHHHHHHH
Confidence 777888776643544544443 2333444455555555555444321100 000000 001111223333444556
Q ss_pred HHHHhchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccccccccccccCCCCCCCchhHHHHhhhhhhhhhc-c
Q 010352 165 AVLNTFALEVIAFIDIISMWWQVAGGLVIIIMLPLVALTTQSASYVFTHFEMSPEATGISSKPYAVILSFLVSQYSLY-G 243 (512)
Q Consensus 165 ~~~~~~g~k~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~-G 243 (512)
+.+.+.|.|...+++.+...+.++..+...+..+...+ ........+- +..+..+....+..++...+=++. +
T Consensus 170 ~~~~~~g~~~i~~l~~i~~p~~~i~~~~~~~~~~~~~g--~~~~~~~~~~----~~~~~~~~~~~~~~~i~~vig~~~~~ 243 (484)
T PRK11375 170 VGIGFGGGKVLNKFTAILNPCIYIVFGGMAIWAISLVG--IGPIFDYIPS----GIQKAENSGFLFLVVINAVVAVWAAP 243 (484)
T ss_pred HHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CchhhccCcc----cccCCcchHHHHHHHHHHHHHHHHHH
Confidence 66678899999999888877776666666555555431 1111100000 111111223445555544333444 4
Q ss_pred ccccchhhhhccCcccccchHHHHHHHHHHHHHH
Q 010352 244 YDSAAHLTEETKGADKTGPIAILSSIGIISIFGW 277 (512)
Q Consensus 244 ~e~~~~~~~E~k~P~k~ip~ai~~~~~~~~i~y~ 277 (512)
.-..+.+++..|+| |+.-++..++..+...+..
T Consensus 244 ~~~~~D~tRy~k~~-~~~~~~~~~g~~i~~~~~~ 276 (484)
T PRK11375 244 AVSASDFTQNAHSF-RAQALGQTLGLVVAYILFA 276 (484)
T ss_pred HccccchhcccCCh-hhhHHHHHHHHHHHHHHHH
Confidence 45678888999986 4455677766666555443
No 55
>PTZ00206 amino acid transporter; Provisional
Probab=98.95 E-value=2e-06 Score=89.02 Aligned_cols=251 Identities=12% Similarity=0.038 Sum_probs=142.6
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChhhHHHhhccCCCCCchh
Q 010352 24 FKTFAISFSTMTLFTGIIPLYGSSLLYAGPASLVWGWVVVSFFTWFVGLAMAEICSSFPTTGSLYFWAAHLASPKWGPFA 103 (512)
Q Consensus 24 ~~~~~~~~~~~~~~~gi~~~~~~~~~~~G~~~~~~~~ii~~l~~~~~a~~~~el~~~~p~~GG~y~~~~~~~g~~~g~~~ 103 (512)
.+...--+.+++| .|+...+ .++..+|-...++..++.++++........+.+.+ ++.-....-++++ +|+..
T Consensus 63 ~~s~fnL~~~~iG-aGILsLP-~Af~~~G~v~giillil~a~ls~ys~~lL~~~~~~-~~~~sY~~la~~~----~G~~g 135 (467)
T PTZ00206 63 AASAFNIASSTVG-AGIVGLP-SAANSSGLVMAMIYLIIITAMTIFSIYALGVAADK-TNIRTYEGVARVL----LGPWG 135 (467)
T ss_pred HHHHHHHHHHHHh-HHHHHHH-HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CCCCCHHHHHHHH----hCHHH
Confidence 4455555666777 8877655 47777887655555555566665556666666555 3344566666667 57777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccCch-HHH-HHHHHHHHHHHHHHHhchhhHHHHHHHH
Q 010352 104 SWCCAWLETIGLIAGMGTQAYAGSQTLQSIILLCTGTNKDGGYFAPK-WLF-LCMYIGLTIIWAVLNTFALEVIAFIDII 181 (512)
Q Consensus 104 g~~~g~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~i~~~~~~~~~~~~~~g~k~~~~~~~~ 181 (512)
.+++.....+........+.+..++.+...+..... .++..+. ... ..+.+.+++.+-+.-.+.++..++++.+
T Consensus 136 ~~~v~~~~~~~~~G~cv~YlIiigd~l~~~l~~~~~----~~~~~~~~~~r~~~~~i~~~i~lPLs~~r~i~~L~~~S~i 211 (467)
T PTZ00206 136 SYYVAATRAFHGFSACVAYVISVGDILSATLKGTNA----PDFLKQKSGNRLLTSLMWLCFMLPLVIPRHIDSLRYVSTI 211 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCc----cchhhhccCcEEeeeehhhhHhhhcccccchHHHHHHHHH
Confidence 889999998888888888888889888877643110 0000000 000 0111111122222334555555555543
Q ss_pred HHHHHHHHHHHHHHhhhhhccccccccccccccccccCCCCCCCchhHHHHhhhhhhhhhccccccchhhhhccCcc-cc
Q 010352 182 SMWWQVAGGLVIIIMLPLVALTTQSASYVFTHFEMSPEATGISSKPYAVILSFLVSQYSLYGYDSAAHLTEETKGAD-KT 260 (512)
Q Consensus 182 ~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~~~E~k~P~-k~ 260 (512)
.....+...+..++............+......+. ++..-+.. ......++...+|+|.+.......-+|+|||+ |+
T Consensus 212 ~~~~i~~~vi~ivi~~~~~~~~~~~~~~~~~~~~~-~~~~~f~~-~~~~~~algi~~faF~~h~~~~~i~~~M~~~t~~~ 289 (467)
T PTZ00206 212 AVSFMVYLVIVIVVHSCMNGLPENIKNVSVGKDDN-AEIILFNS-GNRAIEGLGVFIFAYVFQITAYEVYMDMTNRSVGK 289 (467)
T ss_pred HHHHHHHHHhhhhhhhhcccCcccccccccCCCCC-CceEEecC-chHHHhhhhHHHhhhhhhhhhHHHHHhhcccchhH
Confidence 33222222111111111111000000000000000 00000111 12467889999999999999999999999974 67
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHhc
Q 010352 261 GPIAILSSIGIISIFGWALILALCFSI 287 (512)
Q Consensus 261 ip~ai~~~~~~~~i~y~~~~~~~~~~~ 287 (512)
..+.+..+..++.++|.+..+.-....
T Consensus 290 ~~~v~~~s~~i~~~lY~~~G~~GYl~f 316 (467)
T PTZ00206 290 FVLASTIAMGMCFTMYVLTAFFGYMDF 316 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhcc
Confidence 888999999999999998888877766
No 56
>PLN03074 auxin influx permease; Provisional
Probab=98.93 E-value=2.2e-06 Score=88.41 Aligned_cols=236 Identities=11% Similarity=0.036 Sum_probs=121.6
Q ss_pred chHHHHHHHHHHhhhhhhHHHHHHhhhhcCCchhHHHHHHHHHHHHHHHHHHHH----HHHhhcCCCChhh-----HHHh
Q 010352 22 TLFKTFAISFSTMTLFTGIIPLYGSSLLYAGPASLVWGWVVVSFFTWFVGLAMA----EICSSFPTTGSLY-----FWAA 92 (512)
Q Consensus 22 ~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~G~~~~~~~~ii~~l~~~~~a~~~~----el~~~~p~~GG~y-----~~~~ 92 (512)
+..+...-.+...+| .|+...+ .++..+|-...++..++.+++..-.++... |..++.|+.+-.| .|.+
T Consensus 47 s~~~~~~~l~~~~vG-~GILaLP-~Af~~~G~v~Gii~lv~~~~l~~Yt~~lL~~~~~~~~~r~~~~~~~~~~~~~~~~e 124 (473)
T PLN03074 47 SVYDAWFSCASNQVA-QVLLTLP-YSFSQLGMLSGILFQIFYGLLGSWTAYLISVLYVEYRARKEREKVDFKNHVIQWFE 124 (473)
T ss_pred hHHHHHHHHHHHHHh-HHHHhHH-HHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcCCCchhHHHHHHHH
Confidence 334544556777777 8877655 588888877666666666666665666544 5566666543222 2233
Q ss_pred hccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccCchHHHHHHHHHHHHHHHHHHhchh
Q 010352 93 HLASPKWGPFASWCCAWLETIGLIAGMGTQAYAGSQTLQSIILLCTGTNKDGGYFAPKWLFLCMYIGLTIIWAVLNTFAL 172 (512)
Q Consensus 93 ~~~g~~~g~~~g~~~g~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~ 172 (512)
.+ +..+||.+..+......+........+.+..++.+..+. .......|. .+.+.+++.+.. .+..
T Consensus 125 ~~-~~~~G~~~~~~~~~~~~v~l~~~~v~~li~~~~~~~~l~---------~~~~~~~~~-~i~~~v~~~~~~---i~sl 190 (473)
T PLN03074 125 VL-DGLLGPYWKNVGLAFNCTFLLFGSVIQLIACASNIYYIN---------DNLDKRTWT-YIFGACCATTVF---IPSF 190 (473)
T ss_pred HH-HHhcChhHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhC---------CCcCCCeEE-eehHHHHHHHHH---ccCH
Confidence 21 222455545555433333333333333333333222221 111111121 122222222222 3344
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccccccccccccCCCCCCCchhHHHHhhhhhhhhhccccccchhhh
Q 010352 173 EVIAFIDIISMWWQVAGGLVIIIMLPLVALTTQSASYVFTHFEMSPEATGISSKPYAVILSFLVSQYSLYGYDSAAHLTE 252 (512)
Q Consensus 173 k~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~~~ 252 (512)
|...++..+.....+.....+.+..... ...+. . +..+.. +...++.++...+|+|.|.-....+-.
T Consensus 191 ~~l~~~S~ig~~~tl~~av~i~i~~i~~---~~~~~-----~----~~~~~~-~~~~~f~~~~~i~faf~g~~v~~~I~~ 257 (473)
T PLN03074 191 HNYRIWSFLGLLMTTYTAWYMTIAALSH---GQVEG-----V----KHSGPT-KLVLYFTGATNILYTFGGHAVTVEIMH 257 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh---cCCCC-----C----CCCCch-hHHHHHHHHHHHHHHhcccccHHHHHH
Confidence 5555544333332222222222222221 11111 1 111111 133466677778999999999999999
Q ss_pred hccCcccccchHHHHHHHHHHHHHHHHHHHHHHhc
Q 010352 253 ETKGADKTGPIAILSSIGIISIFGWALILALCFSI 287 (512)
Q Consensus 253 E~k~P~k~ip~ai~~~~~~~~i~y~~~~~~~~~~~ 287 (512)
|+|||+| .++...++...+...|+..++......
T Consensus 258 ~M~~P~~-F~~~~~l~~~~v~~~y~~~~~~gY~~f 291 (473)
T PLN03074 258 AMWKPQK-FKYIYLAATLYVLTLTLPSAAAVYWAF 291 (473)
T ss_pred hccChhc-ccchHHHHHHHHHHHHHHHHHeeeeee
Confidence 9999965 999888888888888888766655555
No 57
>COG1115 AlsT Na+/alanine symporter [Amino acid transport and metabolism]
Probab=98.79 E-value=3.2e-05 Score=76.50 Aligned_cols=308 Identities=16% Similarity=0.185 Sum_probs=185.3
Q ss_pred ccccccchHHHHHHHHHHhhhhhhHHHHHHhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCC-------CChhh
Q 010352 16 ELRREMTLFKTFAISFSTMTLFTGIIPLYGSSLLYAGPASLVWGWVVVSFFTWFVGLAMAEICSSFPT-------TGSLY 88 (512)
Q Consensus 16 ~l~r~l~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~G~~~~~~~~ii~~l~~~~~a~~~~el~~~~p~-------~GG~y 88 (512)
+-++.++.++.+..+.+.-+| .|=......+...+||....|.|+.+ ++...+.+.=.-|+.+|++ .||+-
T Consensus 58 ~~~~~vS~FqAl~~sla~~VG-tGNIaGVAtAI~~GGPGAvFWMWi~A-l~Gmat~f~E~~La~~Yr~kd~~G~~~GGP~ 135 (452)
T COG1115 58 AGKGGVSSFQALMTSLAARVG-TGNIAGVATAIALGGPGAVFWMWIVA-LFGMATKFAESTLAQKYRVKDKDGEYRGGPA 135 (452)
T ss_pred CCCCCcChHHHHHHHHHhccC-cchHHHHHHHHHcCCCccHHHHHHHH-HHHHHHHHHHHHHHhheeEeCCCCCCcCChH
Confidence 456789999999999999988 88777777888999999677777666 4555555555556777652 47999
Q ss_pred HHHhhccCCCCCchhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcCCCCCCCccCchHHHHHHHHHHHHHHHHH
Q 010352 89 FWAAHLASPKWGPFASWCCAWLETIGLI-AGMGTQAYAGSQTLQSIILLCTGTNKDGGYFAPKWLFLCMYIGLTIIWAVL 167 (512)
Q Consensus 89 ~~~~~~~g~~~g~~~g~~~g~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 167 (512)
.|.++.+|.++ .|.+.+....+.+- ......+-..++.+++.+ ..++ ...++++.++...+
T Consensus 136 yYi~kGl~~r~---l~v~FA~~li~afg~i~n~vQ~NsIa~a~~~af------------~~~~---~~~gi~la~l~~~V 197 (452)
T COG1115 136 YYIEKGLGMRW---LAVLFAFALIAAFGFIGNGVQSNSIASALANAF------------GIPP---LVTGIVLALLVALV 197 (452)
T ss_pred HHHHhhcCCcH---HHHHHHHHHHHHHHhhcchhhHHHHHHHHHHhc------------CCcH---HHHHHHHHHHHHHH
Confidence 99999988554 66666655544443 355555556666665543 2233 45666777788888
Q ss_pred HhchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccc--ccc-ccccccCCCCCCC--chhHHHHhhhhhhhhh-
Q 010352 168 NTFALEVIAFIDIISMWWQVAGGLVIIIMLPLVALTTQSASY--VFT-HFEMSPEATGISS--KPYAVILSFLVSQYSL- 241 (512)
Q Consensus 168 ~~~g~k~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~--~~~~~~~~~~~~~~~f- 241 (512)
-+-|+|..+++.....-.+-+..++.++..+....+.-+.-. .++ .|...+-..|+-+ ...++..++.=..|+=
T Consensus 198 I~GGi~rIa~v~~~vVPfMA~~Yi~~~~~Ii~~n~~~iP~~i~~If~sAF~~~aa~GG~~G~~v~~aI~~Gv~RGlfSNE 277 (452)
T COG1115 198 IFGGIKRIAKVSSKVVPFMAILYVLVALVIIVLNISQIPAVIALIFSSAFGPKAAAGGFAGYTVAQAIRNGVKRGLFSNE 277 (452)
T ss_pred HHcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhHHHHHHHHHhcCCchhhhhhhhhHHHHHHHHHHHHHHhhccc
Confidence 999999999999888777777766666666555432222111 111 1100000011111 0112333443344443
Q ss_pred ccccc--cchhhhhccCcccccchHHHHHHHH-HHHHHHHHHHHHHHhccChhhhhcCCCcccCCCcHHHHHHHHhhccc
Q 010352 242 YGYDS--AAHLTEETKGADKTGPIAILSSIGI-ISIFGWALILALCFSIQDFSYLYDKSNETAGAFVPAQILYDAFHGRY 318 (512)
Q Consensus 242 ~G~e~--~~~~~~E~k~P~k~ip~ai~~~~~~-~~i~y~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (512)
.|..+ .++-+.+++||.|.=-..+ +++.+ ..++-...++.+...- .++.-.. .+ |. +....++...+
T Consensus 278 AGmGsap~aaAaA~~~hPv~QGlv~~-~gvfiDT~iVCt~Ta~iIL~sg-~~~~~~~-~~----G~---~ltq~A~~~~~ 347 (452)
T COG1115 278 AGMGSAPIAAAAAKTDHPVKQGLVQM-LGVFIDTLVVCTATAFIILLSG-AWNSGGG-LS----GA---ALTQAAFSSHL 347 (452)
T ss_pred ccCCcchhHHHhhcCCCcHHHhHHHH-hhhhhhhhHHhhHHHHHHHHcC-CcccCCC-Cc----hH---HHHHHHHHHhc
Confidence 34444 4556667788876332222 22333 3333333333333332 2222111 01 21 44555666665
Q ss_pred CCcchhHHHHHHHHHHHHHhHHHHHhhhhhhHHhhh
Q 010352 319 HNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALS 354 (512)
Q Consensus 319 g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~ma 354 (512)
|+ +...++.+.+.+-.+++.+++.+..-|.+.-+.
T Consensus 348 g~-~G~~fv~i~l~lFafTTIlg~yyyge~~~~fl~ 382 (452)
T COG1115 348 GS-WGSYFVAIALFLFAFTTILGWYYYGEKNIEFLF 382 (452)
T ss_pred Cc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55 488999999999999999999999888775543
No 58
>KOG1304 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=98.76 E-value=1.1e-05 Score=80.40 Aligned_cols=238 Identities=15% Similarity=0.149 Sum_probs=144.4
Q ss_pred ccchHHHHHHHHHHhhhhhhHHHHHHhhhhcCCchhH-HHHHHHHHHHHH---HHHHHHHHHHhhcCCCC----------
Q 010352 20 EMTLFKTFAISFSTMTLFTGIIPLYGSSLLYAGPASL-VWGWVVVSFFTW---FVGLAMAEICSSFPTTG---------- 85 (512)
Q Consensus 20 ~l~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~G~~~~-~~~~ii~~l~~~---~~a~~~~el~~~~p~~G---------- 85 (512)
..+..+.+.--.-.++| .|++..+ .++..+|.... +...+++.+... ...-|--+++++..++-
T Consensus 46 ~~s~~~tl~hl~k~~iG-tG~l~lP-~AFk~sG~~~G~~~~~~i~~l~~yc~~~LVk~~~~L~~~~~~~~~~y~~~~~~a 123 (449)
T KOG1304|consen 46 PTSATQTLIHLLKGSIG-TGILSLP-LAFKNSGLVMGLLLTVFIGFLCTYCMHLLVKCSHKLCKRFRGPSLDYAETAESA 123 (449)
T ss_pred CCchHHHHHHHHHhhhc-cccccCh-HHHHhcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCccccHHHHHHHH
Confidence 47777888777778877 8876555 48888886653 334444444333 33445666666642211
Q ss_pred --hhhHHHhhccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccCchHHHHHHHHHHHHH
Q 010352 86 --SLYFWAAHLASPKWGPFASWCCAWLETIGLIAGMGTQAYAGSQTLQSIILLCTGTNKDGGYFAPKWLFLCMYIGLTII 163 (512)
Q Consensus 86 --G~y~~~~~~~g~~~g~~~g~~~g~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 163 (512)
+.+.|.++ +||+..+++-....+.+......+....++-+.++++... ....+-....+ +.+...
T Consensus 124 ~~~~~~~~r~-----~g~~~r~~V~~~L~i~QlGfc~vY~VFva~nl~~i~~~~~------~~~~s~~~~i~--~~~~~~ 190 (449)
T KOG1304|consen 124 MEGGPGWLRK-----YGPAARFVVNFFLVITQLGFCCVYLVFVATNLKQIVDEHS------PGVLSVRLYIL--IQLPPL 190 (449)
T ss_pred HcCCcHHHHh-----hcHHHHHHHHHHHHHHHhchhhEEeeeHHhhHHHHHhccC------CCCccHHHHHH--HHHHHH
Confidence 12224333 7899999999999999999999999999999999986311 11122211122 222222
Q ss_pred HHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccccccccccccCCCCCCCchhHHHHhhhhhhhhhcc
Q 010352 164 WAVLNTFALEVIAFIDIISMWWQVAGGLVIIIMLPLVALTTQSASYVFTHFEMSPEATGISSKPYAVILSFLVSQYSLYG 243 (512)
Q Consensus 164 ~~~~~~~g~k~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G 243 (512)
+..-..+..|...-++. ...+..++.+.++......+.. + .++. |.-.++.+ +-..+..++|+|-|
T Consensus 191 lll~~Ir~Lk~Lsp~Sl---~Anv~~~~g~~ii~~y~~~~~~--~--~~~~---~~~~~~~~----~~lf~GtaifafEG 256 (449)
T KOG1304|consen 191 LLLNLIRNLKILSPFSL---FANVFILVGLAIIMYYLVQDLP--P--TSDL---PAVTGWSG----LPLFFGTAIFAFEG 256 (449)
T ss_pred HHHHHHHhhHHhhHHHH---HHHHHHHHHHHHHHHHHHhccC--C--cccc---ccccchhh----hHHHHHHHHHHhcc
Confidence 22223344444444443 3333333333333322221111 1 1111 12222333 66677788899999
Q ss_pred ccccchhhhhccCcccccc---hHHHHHHHHHHHHHHHHHHHHHHhc
Q 010352 244 YDSAAHLTEETKGADKTGP---IAILSSIGIISIFGWALILALCFSI 287 (512)
Q Consensus 244 ~e~~~~~~~E~k~P~k~ip---~ai~~~~~~~~i~y~~~~~~~~~~~ 287 (512)
.-.+-.+=+++|+|++ +| ..+-.++.++.++|+.....-....
T Consensus 257 ig~VLPlEn~Mk~P~~-F~g~~gVLn~~M~~V~~ly~~~Gf~GYl~f 302 (449)
T KOG1304|consen 257 IGMVLPLENSMKKPQK-FPGPFGVLNLGMGIVTLLYIFLGFFGYLAF 302 (449)
T ss_pred ceEEEehhhcccChhh-cCCccchHHHHHHHHHHHHHHHHHHHHhhc
Confidence 9999999999999965 77 9999999999999998777666665
No 59
>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism]
Probab=98.70 E-value=0.00021 Score=71.78 Aligned_cols=170 Identities=12% Similarity=0.060 Sum_probs=94.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCCChhhHHHhhccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010352 56 LVWGWVVVSFFTWFVGLAMAEICSSFPTTGSLYFWAAHLASPKWGPFASWCCAWLETIGLIAGMGTQAYAGSQTLQSIIL 135 (512)
Q Consensus 56 ~~~~~ii~~l~~~~~a~~~~el~~~~p~~GG~y~~~~~~~g~~~g~~~g~~~g~~~~~~~~~~~a~~~~~~~~~~~~~~~ 135 (512)
++++.+++-++.....-..++.+.+...+ ...-.|.. +|.+-+.+.....++.++...+......++....
T Consensus 54 si~aillG~llG~i~~A~~s~~Ga~~Glp--qmi~sR~~----fG~~Gs~l~sll~~~~~iGW~~v~~~l~~~a~~~--- 124 (442)
T COG1457 54 SLLAILLGNLLGGIFMAYFSYQGARTGLP--QMILSRYP----FGVKGSILPSLLNGITLIGWFGVNVILSGIAIGS--- 124 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccCCC--hheeeccc----ccchhHHHHHHHHHHHHhhHHHHHHHHhcccccc---
Confidence 55555555555555555555555554333 33333444 5665666777777776666666666666655221
Q ss_pred HhcCCCCCCCccCchHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccccccccc
Q 010352 136 LCTGTNKDGGYFAPKWLFLCMYIGLTIIWAVLNTFALEVIAFIDIISMWWQVAGGLVIIIMLPLVALTTQSASYVFTHFE 215 (512)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~k~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 215 (512)
....+.+...+ +.-++.+...++|.|...+++++......+..+......+-..... +..
T Consensus 125 ---------~~~~~~~~~il---i~g~l~~l~~ifG~r~l~~l~~~a~~~~~~lf~~l~~~~~~~~~~~-------~~~- 184 (442)
T COG1457 125 ---------GTGLPVWAGIL---IIGVLMTLVTIFGYRALHKLERIAVPLLLLLFLYLLALLFRSKGGL-------DAL- 184 (442)
T ss_pred ---------CCCCcHHHHHH---HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-------cee-
Confidence 12223333333 3334567778889999999998888877776666555554321111 111
Q ss_pred cccCCCCCCCchhHHHHhhhhhhhhhccccc-cchhhhhccCcc
Q 010352 216 MSPEATGISSKPYAVILSFLVSQYSLYGYDS-AAHLTEETKGAD 258 (512)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~-~~~~~~E~k~P~ 258 (512)
..+.++++.+ +..++..++-.+..|-. ++.++.-.|+|+
T Consensus 185 ~~~~~~~~~~----fl~a~slv~g~~~sw~~~~aDysRy~~~~t 224 (442)
T COG1457 185 WVKGPTSPLS----FLSALSLVIGSFASWGPYAADYSRYAPSPT 224 (442)
T ss_pred eccCCCcchh----HHHHHHHHHHHHHhhhhhhhhhhhhcCCCc
Confidence 1012333443 66666666555655544 577777777765
No 60
>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR). UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT) and is is predicted to have 10 transmembrane domains UNC47_CAEEL []. MTR is an N system amino acid transporter system protein involved in methyltryptophan resistance MTR_NEUCR. Other members of this family include proline transporters and amino acid transporters whose specificity has not yet been identified.
Probab=98.66 E-value=3.8e-09 Score=108.09 Aligned_cols=363 Identities=14% Similarity=0.129 Sum_probs=193.9
Q ss_pred cccchHHHHHHHHHHhhhhhhHHHHHHhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcC---CCChhhHHHhhcc
Q 010352 19 REMTLFKTFAISFSTMTLFTGIIPLYGSSLLYAGPASLVWGWVVVSFFTWFVGLAMAEICSSFP---TTGSLYFWAAHLA 95 (512)
Q Consensus 19 r~l~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~G~~~~~~~~ii~~l~~~~~a~~~~el~~~~p---~~GG~y~~~~~~~ 95 (512)
||-+.++.....+++++| .|+...+ .++.++|-...++..++.+++.........|.....| +.-....-+++.
T Consensus 1 ~~~s~~~~~~~l~~~~iG-~G~L~lP-~af~~~G~~~g~i~l~~~~~~s~~t~~~l~~~~~~~~~~~~~~~y~~l~~~~- 77 (409)
T PF01490_consen 1 HKGSWFSAFFNLINSIIG-AGILSLP-YAFAQSGWVLGIILLVLVALLSYYTMYLLVRAANAMPNGTGRRSYGDLARRA- 77 (409)
T ss_pred CCccHHHHHHHHHHHHHh-HHHHHHH-HHHHHhhhhhhhHHHHHHHHHHHHhhhhhhcccccccccccccccccccccc-
Confidence 456889999999999998 8877666 4777788776777777777888888888888888765 333333444566
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccCchHHHHHHHHHHHHHHHHHHhchhhHH
Q 010352 96 SPKWGPFASWCCAWLETIGLIAGMGTQAYAGSQTLQSIILLCTGTNKDGGYFAPKWLFLCMYIGLTIIWAVLNTFALEVI 175 (512)
Q Consensus 96 g~~~g~~~g~~~g~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~k~~ 175 (512)
+|+....++.....+........+....++.+..+++... .+...+......+ ...+...+.. .|..
T Consensus 78 ---~G~~~~~~~~~~~~~~~~g~~v~y~i~~~~~l~~~~~~~~-----~~~~~~~~~~~~i---~~~i~~pls~--~~~l 144 (409)
T PF01490_consen 78 ---FGPKGKWFVDICIFIYLFGSCVAYLIIIGDSLSSLIPSFF-----GDLFISRYVWIII---FALIVLPLSF--LKNL 144 (409)
T ss_pred ---ccccccccccchheeccccccceeEEEeeeeeeccccccc-----ccccccccccccc---cccccccccc--cchh
Confidence 4554566777777776666666677777777777664311 0011122112221 1122222222 2333
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhccccccccccccccccccCCCCCCCchhHHHHhhhhhhhhhccccccchhhhhcc
Q 010352 176 AFIDIISMWWQVAGGLVIIIMLPLVALTTQSASYVFTHFEMSPEATGISSKPYAVILSFLVSQYSLYGYDSAAHLTEETK 255 (512)
Q Consensus 176 ~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~~~E~k 255 (512)
+.+........+.....+.+............. ++... +.........++..++....++|.+......+.+|+|
T Consensus 145 ~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~--~~~~~~~~~~~~~~~~~i~~faf~~~~~~~~i~~~m~ 219 (409)
T PF01490_consen 145 KSLRYLSILGLFSIFYFIVIVVIYIISYGPGEP---SGVPS--PPVWPFISFSGFFSAFGIIIFAFSCHPNLPPIQSEMK 219 (409)
T ss_pred hHHHHHhhhhhhccceeeeeecceeeeeecccc---ccccc--ccccccchhhHHHHhhhhhhhhhhcccccceeeeecc
Confidence 333222222211111111111111111110000 01100 1111111235588999999999999999999999999
Q ss_pred Cccc--ccchHHHHHHHHHHHHHHHHHHHHHHhccChhhhhcCCCcccCCCcHHHHHHHHhhcccCCcchhHHHHHHHHH
Q 010352 256 GADK--TGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNETAGAFVPAQILYDAFHGRYHNSTGAIILLIVIWG 333 (512)
Q Consensus 256 ~P~k--~ip~ai~~~~~~~~i~y~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 333 (512)
+|+| ++.|....+..++.++|.+.........++ + . + +.....++ ..++...+..+...+
T Consensus 220 ~~~~~~~~~~~~~~s~~~~~~~y~~~g~~gy~~fg~-~-~-~------------~~il~n~~---~~~~~~~i~~~~~~i 281 (409)
T PF01490_consen 220 DPSKFKKMKKVLSISMIICFIIYLLFGIFGYLAFGD-S-V-Q------------GNILLNLP---NDDVLIIIARILLVI 281 (409)
T ss_pred CCccccccceeeeehhhhhhHHhhhhhhcccceeee-e-e-c------------chhhhcCC---Ccccccccccccchh
Confidence 9875 456999999999999999888877666521 1 1 0 11122221 111234444445555
Q ss_pred HHHHhHHHHHhhhhhhHHhhhcCC-----CCCcccccccccccCCchHHHH-HHHHHHHHHHhccccccHHHHHHHHHHH
Q 010352 334 SFFFGGLSVTTSAARVVYALSRDK-----GIPFSSIWRQLHPKHKVPSNAV-WLCAAICIILGLPILKVNVVFTAITSIC 407 (512)
Q Consensus 334 ~~~~~~~~~~~~~sR~l~~ma~d~-----~lP~~~~f~~~~~~~~~P~~a~-~~~~~i~~~~~~~~~~~~~~~~~l~~~~ 407 (512)
..+.+..-......+.+...-+++ .-+ +..++.+..+..+ ....+++.++... .+++..+.++.
T Consensus 282 ~~~~s~pl~~~p~~~~l~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~iA~~----vp~~~~i~~l~ 351 (409)
T PF01490_consen 282 SLLLSYPLQLFPARNSLENLLFKRAASSRDSP------KNTPSSRWLRYLIRIILVLLSFLIAIF----VPNFGDIISLV 351 (409)
T ss_pred hhhhccccccchhHhhhhhheecccccccccc------ccccccceeeeeeecchhhhhhhhhhh----ccchhhhhccc
Confidence 555555555555555555544332 111 0010111111111 1111111222221 23566666664
Q ss_pred H--HHHHHHHHHHHHHHHhhcccCc
Q 010352 408 T--IGWVGGYAVPIFARMVMAEQKF 430 (512)
Q Consensus 408 ~--~~~~~~~~l~~~~~~~~r~~~~ 430 (512)
+ ....+.+.++...+++.+++++
T Consensus 352 Ga~~~~~i~fi~P~l~~~~~~~~~~ 376 (409)
T PF01490_consen 352 GALFGSFISFILPALLYLKLFKRKR 376 (409)
T ss_pred chHHHHhHHHHHHHHHHHHhhcccc
Confidence 3 3346788889998888766543
No 61
>COG1953 FUI1 Cytosine/uracil/thiamine/allantoin permeases [Nucleotide transport and metabolism / Coenzyme metabolism]
Probab=98.63 E-value=0.00075 Score=68.06 Aligned_cols=336 Identities=10% Similarity=-0.032 Sum_probs=179.2
Q ss_pred CCCcccccccchHHHHHHHHHHhhhhhhHHHHHHhhhhcC-CchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChhhHH
Q 010352 12 GYKQELRREMTLFKTFAISFSTMTLFTGIIPLYGSSLLYA-GPASLVWGWVVVSFFTWFVGLAMAEICSSFPTTGSLYFW 90 (512)
Q Consensus 12 ~~~~~l~r~l~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~-G~~~~~~~~ii~~l~~~~~a~~~~el~~~~p~~GG~y~~ 90 (512)
+..++.+|.-++++-+.+=.+.+.. .+-.......++.+ ++..++++.+++-++....+..-+..+.++.-+ .-.-
T Consensus 32 ~P~~~~~rtWg~~~~~~~W~~~~~n-v~~~~~aa~~~~lGLS~~qallai~vG~~iv~i~m~Lng~~G~~~gIp--Fpv~ 108 (497)
T COG1953 32 APTPAEQRTWGWWNYFALWLGMVHN-VPTYMLAAGLFELGLSPWQALLAILVGNLIVAIFMVLNGHAGSKYGIP--FPVL 108 (497)
T ss_pred CCCccccCcchHHHHHHHHHHhhcc-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhccCcccccCCC--chHH
Confidence 3334557888998888887776655 33233333344433 344377777777777666666655555555222 3445
Q ss_pred HhhccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC----CCCCCccCchHHHHHHHHHHHH-HHH
Q 010352 91 AAHLASPKWGPFASWCCAWLETIGLIAGMGTQAYAGSQTLQSIILLCTGT----NKDGGYFAPKWLFLCMYIGLTI-IWA 165 (512)
Q Consensus 91 ~~~~~g~~~g~~~g~~~g~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~i~~~~~~-~~~ 165 (512)
.|..+|-.. +-.-...-.+.-+...+..++..++.++.++....+. +........+. ..+++..+.+ +-.
T Consensus 109 ~RaSFGi~G----a~~p~l~R~i~A~~WyGvqty~Gg~av~llL~~i~~~~~~~~~~~~~lg~tt-~~~i~F~ifW~l~~ 183 (497)
T COG1953 109 SRASFGIYG----ANFPALIRAIVAIVWYGVQTYAGGLAVNLLLGSIFPSLLIPNTLSPLLGLTT-LELICFFIFWVLQL 183 (497)
T ss_pred HHHHHhhhh----hhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhccccccCCccccccCCcH-HHHHHHHHHHHHHH
Confidence 566644433 3333434444445555677777777777666553321 00000111122 2334444444 455
Q ss_pred HHHhchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccccccccccccCCCCCCCchhHHHHhhhhhhhhh-ccc
Q 010352 166 VLNTFALEVIAFIDIISMWWQVAGGLVIIIMLPLVALTTQSASYVFTHFEMSPEATGISSKPYAVILSFLVSQYSL-YGY 244 (512)
Q Consensus 166 ~~~~~g~k~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f-~G~ 244 (512)
.+...|.+..+|++.+...+..+..+.+.+....+++.......... ...+-+.....++.++...+-.| +..
T Consensus 184 l~~~~g~~~Ir~~~~~a~p~~~~~~~gl~Iw~~~~a~g~~~~~~~p~------~~~~~~~~~w~~~~~~~~~v~~~Atl~ 257 (497)
T COG1953 184 LVLFKGMESIRKFETWAGPLVYIAMLGLAIWALVKAGGSSILGELPA------GTVSGSNSSWAFLAGIAAWVGFWATLA 257 (497)
T ss_pred HHHhcCHHHHHHHHHHhchHHHHHHHHHHHHHHHhcCCcCccccCCC------CCCCcchhHHHHHHHHHHHHHHHHHHh
Confidence 56677999999999999999999888888888887654322211111 11111111233444443222222 444
Q ss_pred cccchhhhhccCcccccchHHHHHHHHHHHHHHHHHHHHHHhccChhhhhcCCCcccCCCcHHHHHHHHhhcccCCcchh
Q 010352 245 DSAAHLTEETKGADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNETAGAFVPAQILYDAFHGRYHNSTGA 324 (512)
Q Consensus 245 e~~~~~~~E~k~P~k~ip~ai~~~~~~~~i~y~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 324 (512)
-..+..+++.|+| |+.-++-.+++.+...+.-+..++..... ..+.+... -+|. +.+... .+....
T Consensus 258 lN~~DFsRfa~s~-~~~~~gq~~gLPv~~~l~~ligvv~tsa~---~~lyG~~~----w~P~-di~~~~-----~~~~~~ 323 (497)
T COG1953 258 LNIPDFTRFAKSQ-KAQIWGQLVGLPVNFALFSLIGVVVTSAS---YILYGETI----WDPL-DIVARF-----LSGFYA 323 (497)
T ss_pred cCCchhhcccCCh-hhhhhccchhhhHHHHHHHHHHhhHHHHH---HHhhCccc----CCHH-HHHHHh-----ccchHH
Confidence 5678889999996 55556777777777776666666555444 33333221 1121 222222 322244
Q ss_pred H-HHHHHHHHHHHHhHHHHHhhhhhhHHhhhcCCCCCcccccccccccCCchHHHHHHHHHHHHHH
Q 010352 325 I-ILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQLHPKHKVPSNAVWLCAAICIIL 389 (512)
Q Consensus 325 ~-~~~~~~~~~~~~~~~~~~~~~sR~l~~ma~d~~lP~~~~f~~~~~~~~~P~~a~~~~~~i~~~~ 389 (512)
. +..+...++.++...+.-..++-.-. .+.+| |.... |+ +-+++.+++.++
T Consensus 324 ~fl~~l~~~iati~~Ni~aN~vsp~~D~----s~l~P--k~in~---kr-----g~liaA~ial~~ 375 (497)
T COG1953 324 AFLAGLTFAVATISTNIAANIVSPGYDL----SALFP--KYINI---KR-----GGLIAAIIALLI 375 (497)
T ss_pred HHHHHHHHHHHHHhhhHHhccCChHHHH----HHhcc--cccch---hh-----hHHHHHHHHHHH
Confidence 3 55555666666655444433333222 26777 54442 33 355555555553
No 62
>COG3949 Uncharacterized membrane protein [Function unknown]
Probab=98.61 E-value=6.9e-05 Score=70.97 Aligned_cols=269 Identities=12% Similarity=0.113 Sum_probs=150.4
Q ss_pred HHHHHHHhhhhhhHHHHHHhhhhcCCchh--HHHHHHHHHHHHHHHHHHHHHHHhhcCCCChhhHHHhhccCCCCCchhH
Q 010352 27 FAISFSTMTLFTGIIPLYGSSLLYAGPAS--LVWGWVVVSFFTWFVGLAMAEICSSFPTTGSLYFWAAHLASPKWGPFAS 104 (512)
Q Consensus 27 ~~~~~~~~~~~~gi~~~~~~~~~~~G~~~--~~~~~ii~~l~~~~~a~~~~el~~~~p~~GG~y~~~~~~~g~~~g~~~g 104 (512)
....++.+.| +| +.+.++.++..|+-+ ..++.++.+++....+....|+++++ ++...-.+.++..+|++++
T Consensus 9 ~f~~ig~~vG-AG-fAsGqEi~QFF~~~G~~s~~gIivs~vlf~~~g~vim~ig~~f-~a~~y~~~~~~v~~~~~~k--- 82 (349)
T COG3949 9 AFAFIGTVVG-AG-FASGQEIMQFFGKYGVYSILGIILSTVLFTLSGAVIMTIGKKF-NATSYREILKYVSGPKFAK--- 82 (349)
T ss_pred HHHHHHHhhc-cc-ccchHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHh-cccchHHHHHHHhhHHHHH---
Confidence 3445556666 66 666667766655543 88899999999999999999999999 5667778899996666655
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcCCCCCCCccCchHHHHHHHHHHHHHHHHHHhch-hhHHHHHHHHH
Q 010352 105 WCCAWLETIGLIAGMGTQAYAGSQ-TLQSIILLCTGTNKDGGYFAPKWLFLCMYIGLTIIWAVLNTFA-LEVIAFIDIIS 182 (512)
Q Consensus 105 ~~~g~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g-~k~~~~~~~~~ 182 (512)
+--....+ +.+..++...+.+. .+.+.+ ..|.|...+ .++.+..++..++ .+..-+++.+.
T Consensus 83 -i~d~~iif-~lf~~~vVM~AGags~~~e~~------------~lP~wiGal---i~i~~v~i~lfl~~vegi~tvn~iI 145 (349)
T COG3949 83 -IIDIIIIF-FLFSTAVVMLAGAGSLLEEMF------------GLPYWIGAL---IIILLVLILLFLGRVEGIITVNGII 145 (349)
T ss_pred -HHHHHHHH-HHHHHHHHHhccchhHHHHHh------------CccHHHHHH---HHHHHHHHHHHHhcccceeeeheeH
Confidence 32222222 23333333333333 555543 346555433 3334445555555 66666666554
Q ss_pred HHHHHHHHHHHHHhhhhhccccccccccccccccccCCCCCCCchhHHHHhhhhhhhhhccccccchhhhhccCcccccc
Q 010352 183 MWWQVAGGLVIIIMLPLVALTTQSASYVFTHFEMSPEATGISSKPYAVILSFLVSQYSLYGYDSAAHLTEETKGADKTGP 262 (512)
Q Consensus 183 ~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~~~E~k~P~k~ip 262 (512)
+-+.++.+........... .++..+. +. . ...+|+....+ ..+.-..........+++|+|+ +|+..
T Consensus 146 ~P~LIi~l~~v~~~~~f~~-~~~~a~~---~~-~--~~~~W~~~~~~-----Y~alNi~~~~avLv~lg~~~~~-~~~~~ 212 (349)
T COG3949 146 TPFLIIILVLVTLSFQFTN-LGNAAQI---VL-T--KQGNWKASAVG-----YGALNILVAVAVLVPLGGRMES-RKVSG 212 (349)
T ss_pred HHHHHHHHHHHHHHHHHhh-ccchhhh---cC-C--cCCChHHHHHh-----hhhHHHHhHhHhhhhhcccccc-cchhh
Confidence 4444443222222222211 1111111 11 1 33445431111 1111112333445678899999 57788
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhccChhhhhcCCCcccCCCcHHHHHHHHhhcccCCcchhHHHHHHHHHHHHHhHHHH
Q 010352 263 IAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNETAGAFVPAQILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSV 342 (512)
Q Consensus 263 ~ai~~~~~~~~i~y~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 342 (512)
++-..+-++.+++..+......... +++.+.+ .|..+. +.+. + +.....+.+.+.+...++..+.
T Consensus 213 ~g~l~gglIlgvl~~l~nlsLi~~~---~~v~~~d------IP~l~i----~~~~-~-~~i~lvm~vIi~~~IytT~vg~ 277 (349)
T COG3949 213 IGGLIGGLILGVLLFLINLSLIALY---DKVVNYD------IPLLTI----AKNF-S-PLIGLVMSVIIWLEIYTTTVGL 277 (349)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHhhc---chhhccC------CcHHHH----HHhc-c-HHHHHHHHHHHHHHHHHHHHHH
Confidence 9988888888888888777776555 3554443 243332 3221 2 2256666666777777777666
Q ss_pred Hhhh
Q 010352 343 TTSA 346 (512)
Q Consensus 343 ~~~~ 346 (512)
+++-
T Consensus 278 iy~l 281 (349)
T COG3949 278 IYGL 281 (349)
T ss_pred HHHH
Confidence 6653
No 63
>TIGR00835 agcS amino acid carrier protein. Members of the AGCS family transport alanine and/or glycine in symport with Na+ and or H+.
Probab=98.61 E-value=0.00022 Score=71.80 Aligned_cols=300 Identities=15% Similarity=0.159 Sum_probs=161.6
Q ss_pred cccchHHHHHHHHHHhhhhhhHHHHHHhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcC---C----CChhhHHH
Q 010352 19 REMTLFKTFAISFSTMTLFTGIIPLYGSSLLYAGPASLVWGWVVVSFFTWFVGLAMAEICSSFP---T----TGSLYFWA 91 (512)
Q Consensus 19 r~l~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~G~~~~~~~~ii~~l~~~~~a~~~~el~~~~p---~----~GG~y~~~ 91 (512)
++++.++.+....+..+| .|=......+...+||.+..|.|+.+.+. ..+.+.-.-++.++. + .||.-.|.
T Consensus 45 g~iS~fqA~~~ala~~VG-~GnI~Gva~Ai~~GGpGAvFWMWI~allG-m~~~~~e~~L~~~yr~~~~~g~~~GGP~yyi 122 (425)
T TIGR00835 45 GGVSSFQALFTSLAARVG-IGNIVGVATAIAIGGPGAVFWMWVTAFIG-MATKFVESTLAQKYRERDADGVFRGGPMYYI 122 (425)
T ss_pred CCccHHHHHHHHHHHHHh-hhHHHHHHHHHHhcCCCchHHHHHHHHHH-HHHHHHHHHHHHHeeeeCCCCCEecChHHHH
Confidence 469999999999999988 66344445568889998666676666443 344444444454444 2 24555899
Q ss_pred hhccCCCCCchhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccCchHHHHHHHHHHHHHHHHHHhc
Q 010352 92 AHLASPKWGPFASWCCAWLETIGL-IAGMGTQAYAGSQTLQSIILLCTGTNKDGGYFAPKWLFLCMYIGLTIIWAVLNTF 170 (512)
Q Consensus 92 ~~~~g~~~g~~~g~~~g~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 170 (512)
++.++.| +.|.+.+.. .+.+ ........-..++.+++. +..++| .+++++.++...+-.-
T Consensus 123 ~~gl~~k---~lg~lfa~~-~i~~f~~~~~~Q~nsi~~~~~~~------------~~~~~~---v~~i~l~~l~~~vi~G 183 (425)
T TIGR00835 123 KKGLGMR---WLAVLFAVF-LIASFGIGNMVQANAIASALSNA------------FNVPKL---VTGIVLTVLTALIIFG 183 (425)
T ss_pred HHHhCcc---HHHHHHHHH-HHHHHhhhHHHHHHHHHHHHHHH------------cCCcHH---HHHHHHHHHHHHHHhc
Confidence 9986643 356555555 3333 223334444444444422 222333 3444555556666666
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccc--ccccccccccCCCCCCCchhH------HHHhhhhhhhhh-
Q 010352 171 ALEVIAFIDIISMWWQVAGGLVIIIMLPLVALTTQSAS--YVFTHFEMSPEATGISSKPYA------VILSFLVSQYSL- 241 (512)
Q Consensus 171 g~k~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~f- 241 (512)
|+|..+++...+.-++....+..++..+....++-++- ..+++. . ++....+++.| +..++.=..|+=
T Consensus 184 Gik~Ia~v~~~lvP~m~~~Y~~~~l~ii~~n~~~lp~~~~~If~~A-F--~~~a~~GG~~G~~v~~ai~~Gv~Rg~fSNE 260 (425)
T TIGR00835 184 GLKRIAKISSVVVPFMALLYVIMALYIIIMNIEQLPAVISLIFRSA-F--GGDAAAGGFAGSTVAQAIMIGVKRGLFSNE 260 (425)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh-C--CchhhHhHHHHHHHHHHHHHhhHHHHhccc
Confidence 99999999988888888777666554444322111111 111111 1 11111111111 111222223332
Q ss_pred --ccccccchhhhhccCcccccchHHHHHHHH-HHHHHHHHHHHHHHhccChhhhhcCCCcccCCCcHHHHHHHHhhccc
Q 010352 242 --YGYDSAAHLTEETKGADKTGPIAILSSIGI-ISIFGWALILALCFSIQDFSYLYDKSNETAGAFVPAQILYDAFHGRY 318 (512)
Q Consensus 242 --~G~e~~~~~~~E~k~P~k~ip~ai~~~~~~-~~i~y~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (512)
.|....++-+.|++||.|.=-.++. ++.+ +.++-...++++...- .+++- +..+ + .+....+++..+
T Consensus 261 AG~Gsa~~a~a~a~~~hP~~QGl~~~~-~vfiDTivvCt~Talvil~tg-~~~~~-~~~~----g---~~lt~~af~~~~ 330 (425)
T TIGR00835 261 AGMGSAPIAAAAAQVSHPVRQGLVQML-GVFIDTMIVCTATALVILLSG-VWNNG-EGLS----G---AQLTQQALSYGL 330 (425)
T ss_pred cccCcHHHHHHHhcCCCcHHHHHHHHH-HHHHHHHHHHHHHHHHHHHcC-ccCCC-CCCc----H---HHHHHHHHHHHh
Confidence 3444456667788888774322222 2222 3333333333332221 22210 0101 2 134445566554
Q ss_pred CCcchhHHHHHHHHHHHHHhHHHHHhhhhhhHHhh
Q 010352 319 HNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYAL 353 (512)
Q Consensus 319 g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~m 353 (512)
|. +...++.+++++..+++..++.+..-+.+.-+
T Consensus 331 g~-~g~~~v~i~~~lFaftTii~~~yyge~~~~yl 364 (425)
T TIGR00835 331 GS-FGAVFVAVALFLFAFSTIIGWYYYGEKNAEFL 364 (425)
T ss_pred hh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 43 47888999999999999999998888877554
No 64
>PRK09442 panF sodium/panthothenate symporter; Provisional
Probab=98.49 E-value=0.0026 Score=66.58 Aligned_cols=299 Identities=13% Similarity=0.075 Sum_probs=133.6
Q ss_pred ccccchHHHHHHHHHHhhhhhhHHHHHHhhhhcCCchhHHHHH---HHHHHHHHHHHHHHHHHHhhcCCCChhhHHHhhc
Q 010352 18 RREMTLFKTFAISFSTMTLFTGIIPLYGSSLLYAGPASLVWGW---VVVSFFTWFVGLAMAEICSSFPTTGSLYFWAAHL 94 (512)
Q Consensus 18 ~r~l~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~G~~~~~~~~---ii~~l~~~~~a~~~~el~~~~p~~GG~y~~~~~~ 94 (512)
.|+++++-......++..+.......++.++.. |....+.+. ....+.....+.-+.++.++. +.-...+|.++-
T Consensus 40 gr~~~~~~~~~s~~at~~s~~t~ig~~g~~y~~-G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~-~~~T~~e~l~~R 117 (483)
T PRK09442 40 NRSMGGFVLAMTLIATYISASSFIGGPGAAYKY-GLGWVLLAMIQVPTVWLSLGILGKKFAILARKY-NAVTLNDMLRAR 117 (483)
T ss_pred CCCccHHHHHHHHHHHHhhHhHHhCChhHHHHh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCccHHHHHHHH
Confidence 588888766665555555423333333333333 332122111 111112223334455556655 445677777777
Q ss_pred cCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccCchHHHHHHHHHHHHHHHHHHhchhhH
Q 010352 95 ASPKWGPFASWCCAWLETIGLIAGMGTQAYAGSQTLQSIILLCTGTNKDGGYFAPKWLFLCMYIGLTIIWAVLNTFALEV 174 (512)
Q Consensus 95 ~g~~~g~~~g~~~g~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~k~ 174 (512)
+|++. ...+.+....+......+......+..++.+++. +.+...++..++ ......+-|.|.
T Consensus 118 yg~~~---~~~~~~i~~~~~~~~~~~~ql~~~g~~l~~~~gi------------~~~~~iii~~~i--v~iYt~~GGl~a 180 (483)
T PRK09442 118 YQSRL---LVWLASLSLLVFFFAAMTAQFIGGARLLETATGI------------SYETGLLIFGIT--VALYTAFGGFRA 180 (483)
T ss_pred hCChH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC------------CHHHHHHHHHHH--HHHHHHhccHHH
Confidence 55442 3445555555555556677777777777776522 333333332222 233445556666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhcccccc--cccc-c-cccccccCCCCCCCchhHHHHhh-hhhhhhhccccccch
Q 010352 175 IAFIDIISMWWQVAGGLVIIIMLPLVALTTQS--ASYV-F-THFEMSPEATGISSKPYAVILSF-LVSQYSLYGYDSAAH 249 (512)
Q Consensus 175 ~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~--~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~f~G~e~~~~ 249 (512)
......+-..+.++..+++.+..+...++... .+.. . +++-.+++..++.+ ......+ ....+...+.....+
T Consensus 181 v~~TD~iQ~~i~~~~~~vi~~~~~~~~gG~~~~~~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~g~~~~p~~~q 258 (483)
T PRK09442 181 VVLTDALQGIVMLVGTVILLIGVIHAGGGLENAVQTLQAIDPQLVTPQGADDILS--PPFMTSFWILVCFGVIGLPHTAV 258 (483)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHhcCccccCCCCCCcccc--HHHHHHHHHHHHHHHhCCCHHHH
Confidence 66655444555444444443333322211100 0000 0 00000001111111 1111111 111122233333333
Q ss_pred hhhhccCcccccchHHHHHHHHHHHHHHHHHHHHHHhccChhhhhcCCCcccCCCcHHHHHHHHhhcccCCcchhHHHHH
Q 010352 250 LTEETKGADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNETAGAFVPAQILYDAFHGRYHNSTGAIILLI 329 (512)
Q Consensus 250 ~~~E~k~P~k~ip~ai~~~~~~~~i~y~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 329 (512)
-.=..||+ |+..|+..++.+....+++.....-.....-.++..+.+ +.......+ . -+++..-++..
T Consensus 259 R~~aaks~-~~a~~~~~~~~~~~~~~~~~~~~~G~~~~~~~p~~~~~~------~~~p~l~~~----~-lp~~l~gl~~a 326 (483)
T PRK09442 259 RCMSYKDS-KALHRGIIIGTIVVGFLMFGMHLAGALGRAVLPDLTVPD------KVIPTLMLK----V-LPPFAAGIFLA 326 (483)
T ss_pred HHHHcCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcc------chHHHHHHH----H-cCHHHHHHHHH
Confidence 33346774 678888888877666666544433211110011111111 122222222 2 44556666667
Q ss_pred HHHHHHHHhHHHHHhhhhhh
Q 010352 330 VIWGSFFFGGLSVTTSAARV 349 (512)
Q Consensus 330 ~~~~~~~~~~~~~~~~~sR~ 349 (512)
+++.+..++..+.+.+.+-.
T Consensus 327 ~~~aA~mST~~s~l~~~ss~ 346 (483)
T PRK09442 327 APMAAIMSTVDSQLLQSSST 346 (483)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777665543
No 65
>TIGR02119 panF sodium/pantothenate symporter. Pantothenate (vitamin B5) is a precursor of coenzyme A and is made from aspartate and 2-oxoisovalerate in most bacteria with completed genome sequences. However, some pathogens must import pantothenate. This model describes PanF, a sodium/pantothenate symporter, from a larger family of Sodium/substrate symporters (pfam00474). Several species that have this transporter appear to lack all enzymes of pantothenate biosynthesis, namely Haemophilus influenzae, Pasteurella multocida, Fusobacterium nucleatum, and Borrelia burgdorferi.
Probab=98.41 E-value=0.0023 Score=66.76 Aligned_cols=300 Identities=14% Similarity=0.058 Sum_probs=135.9
Q ss_pred ccccchHHHHHHHHHHhhhhhhHHHHHHhhhhcCCchhHHHHH---HHHHHHHHHHHHHHHHHHhhcCCCChhhHHHhhc
Q 010352 18 RREMTLFKTFAISFSTMTLFTGIIPLYGSSLLYAGPASLVWGW---VVVSFFTWFVGLAMAEICSSFPTTGSLYFWAAHL 94 (512)
Q Consensus 18 ~r~l~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~G~~~~~~~~---ii~~l~~~~~a~~~~el~~~~p~~GG~y~~~~~~ 94 (512)
.|+++++.......++..+.......++..+. .|.......+ ..+.+.....+.-+.+..++. +.-...+|.++-
T Consensus 39 gr~l~~~~~~~s~~at~~s~~t~~g~~g~~y~-~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~T~~e~l~~R 116 (471)
T TIGR02119 39 GRSMGGFVLAMTLVATYGSASSFIGGPGIAYN-YGLGWVLLAMIQVPTGYFVLGVLGKKFAIISRKY-NAITINDVLKAR 116 (471)
T ss_pred CCcccHHHHHHHHHHHHhhHHHHcCcHHHHHH-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCccHHHHHHHH
Confidence 58899987777777766653333333343333 3432111111 111111122233344445544 445788888887
Q ss_pred cCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccCchHHHHHHHHHHHHHHHHHHhchhhH
Q 010352 95 ASPKWGPFASWCCAWLETIGLIAGMGTQAYAGSQTLQSIILLCTGTNKDGGYFAPKWLFLCMYIGLTIIWAVLNTFALEV 174 (512)
Q Consensus 95 ~g~~~g~~~g~~~g~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~k~ 174 (512)
+|++. ...+.+....+.............+..++.+++. +.+...++..++ .......-|.|.
T Consensus 117 yg~~~---~~~~~~i~~i~~~~~~~~~ql~g~g~~l~~~~gi------------~~~~~iii~~~i--v~iYt~~GG~~a 179 (471)
T TIGR02119 117 YNNKF---LVWLSSISLLVFFFSAMVAQFIGGARLIESLTGL------------SYLTALFIFSSS--VLIYTTFGGFRA 179 (471)
T ss_pred cCCCc---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHH--HHHHHHhhhHHH
Confidence 66543 2334444444444445555666666666666422 334434333222 334445567777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhccccccccccccc----cccccCCCCCCCchhHHHHhh-hhhhhhhccccccch
Q 010352 175 IAFIDIISMWWQVAGGLVIIIMLPLVALTTQSASYVFTH----FEMSPEATGISSKPYAVILSF-LVSQYSLYGYDSAAH 249 (512)
Q Consensus 175 ~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~-~~~~~~f~G~e~~~~ 249 (512)
..+.+.+-..+.++..++..+..+...++........++ .-.++...++.. ..+...+ ....+...+.....+
T Consensus 180 v~~td~iQ~~v~~~~~~~~~~~~l~~~gG~~~~~~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~g~~~~p~~~~ 257 (471)
T TIGR02119 180 VALTDAIQGIVMFTGTTILLIAVIKAGGGVEKIMEKLKDIDPNLITPFGGDGGLT--KPFVASFWILVGIGVIGLPQTAV 257 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhcCccccCCCCCCcchh--hhHHHHHHHHHHHHHhCchHHHH
Confidence 666665555555554444444333332111000000000 000001111111 0111111 111122223333333
Q ss_pred hhhhccCcccccchHHHHHHHHHHHHHHHHHHHHHHhccChhhhhcCCCcccCCCcHHHHHHHHhhcccCCcchhHHHHH
Q 010352 250 LTEETKGADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNETAGAFVPAQILYDAFHGRYHNSTGAIILLI 329 (512)
Q Consensus 250 ~~~E~k~P~k~ip~ai~~~~~~~~i~y~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 329 (512)
-.-..|| +|+..|+..++.+....++....+.-.....-.+++.+.+ +.......+. -+++..-++..
T Consensus 258 R~~aak~-~~~a~~~~~~~~~~~~~~~~~~~~~G~~a~~~~p~~~~~d------~~~p~~~~~~-----lp~~~~gl~~a 325 (471)
T TIGR02119 258 RCMSYKD-SKAMHRAMIIGTIVVGIIMLGMHLAGVLGRAVIPDLTVPD------KVIPLLAIKV-----LPPILAGIFLA 325 (471)
T ss_pred HHHhcCC-HHHHhhhHhHHHHHHHHHHHHHHHHHHhhhhhccCCCCcc------chHHHHHHHH-----chHHHHHHHHH
Confidence 4555677 4778899998877666665544433212110111221111 1222222222 33446666667
Q ss_pred HHHHHHHHhHHHHHhhhhhhH
Q 010352 330 VIWGSFFFGGLSVTTSAARVV 350 (512)
Q Consensus 330 ~~~~~~~~~~~~~~~~~sR~l 350 (512)
+++.+.+++..+.+.+.+-.+
T Consensus 326 ~llaA~mST~~s~l~~~ss~~ 346 (471)
T TIGR02119 326 APMAAIMSTVNSLLLQSSSTI 346 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 777777878777776666543
No 66
>TIGR00800 ncs1 NCS1 nucleoside transporter family. The NCS1 family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.
Probab=98.32 E-value=0.0062 Score=62.90 Aligned_cols=248 Identities=11% Similarity=0.003 Sum_probs=119.0
Q ss_pred cccccccchHHHHHHHHHHhhhhhhHHHHHHhhhhc-CCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChhhHHHhh
Q 010352 15 QELRREMTLFKTFAISFSTMTLFTGIIPLYGSSLLY-AGPASLVWGWVVVSFFTWFVGLAMAEICSSFPTTGSLYFWAAH 93 (512)
Q Consensus 15 ~~l~r~l~~~~~~~~~~~~~~~~~gi~~~~~~~~~~-~G~~~~~~~~ii~~l~~~~~a~~~~el~~~~p~~GG~y~~~~~ 93 (512)
++.+|+-++++...+=.+......++.... ..... -+...++++.+++.++........+..+.++-. ......|.
T Consensus 8 p~~~R~~~~~~~~~~W~~~~~~v~~~~~Ga-~l~~~GLs~~~ailai~lG~~i~~~~~~l~~~~G~r~Gl--~~~v~sR~ 84 (442)
T TIGR00800 8 KEEERTWSFLNYFSLWLGAAFNIATWAIGA-LGLPLGLSWWQSVIAIILGNLLGGIFVALNSRAGAKYGL--PFPVLSRA 84 (442)
T ss_pred CcccCCccHHHHHHHHHHHhhhHHHHHHHH-HHHhcCCcHHHHHHHHHHHHHHHHHHHHHhhhhHHHhCC--Ccchhhhh
Confidence 344566788888887776665433333222 22211 122225555555555444444444445544422 35666777
Q ss_pred ccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcc-Cc--hHHHHHHHHHHHHHH-HHHHh
Q 010352 94 LASPKWGPFASWCCAWLETIGLIAGMGTQAYAGSQTLQSIILLCTGTNKDGGYF-AP--KWLFLCMYIGLTIIW-AVLNT 169 (512)
Q Consensus 94 ~~g~~~g~~~g~~~g~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~i~~~~~~~~-~~~~~ 169 (512)
. +|.+-+.+.+...++..+...+..+...++.++.++....+ .... ++ +.......+++..+. .....
T Consensus 85 ~----FG~~Gs~~~~~~~~i~~igW~av~~~~~g~al~~~l~~i~~----~~~~~~~~~t~~~~~~~~i~~~l~~~~~~~ 156 (442)
T TIGR00800 85 S----FGIYGSLLPSLLRIVMAIGWYGVQAWVGGLCVALMLDSIFP----GYLHLGNGMTTLELICFIIFWALVLVFLFF 156 (442)
T ss_pred h----hhhhHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcc----cccccCCcccHHHHHHHHHHHHHHHHHHHc
Confidence 7 45555667777777777888888888888887777654221 0000 11 001111111222222 22345
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccccccccccccCCCCCCCchhHHHHhhhhhhhhh-ccccccc
Q 010352 170 FALEVIAFIDIISMWWQVAGGLVIIIMLPLVALTTQSASYVFTHFEMSPEATGISSKPYAVILSFLVSQYSL-YGYDSAA 248 (512)
Q Consensus 170 ~g~k~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f-~G~e~~~ 248 (512)
.|.|...+.+...... .+..+.+.+..+....+..+. . +.. +..+-+....+++.++...+-.+ .+....+
T Consensus 157 ~g~~~~~~~~~~a~~~-~~~~~~~~~~~~~~~~g~~~~-~--~~~----~~~~~~~~~~~f~~~~~~~~g~~~s~~~~~~ 228 (442)
T TIGR00800 157 FGYKIRHLFEWLAVVP-PFAAFGMLIWALSKAHGKGPL-G--ELT----GTLHGSTGAWAFLYALSLVIGSFATWATNAP 228 (442)
T ss_pred CHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHcCCCCcc-c--cCC----CCCCcchhHHHHHHHHHHHHHHHHHHHcCch
Confidence 5655555544444333 333333333333332211111 1 010 10000111344555554433333 4445678
Q ss_pred hhhhhccCcccccchHHHHHHHHHHHHHHHHHHH
Q 010352 249 HLTEETKGADKTGPIAILSSIGIISIFGWALILA 282 (512)
Q Consensus 249 ~~~~E~k~P~k~ip~ai~~~~~~~~i~y~~~~~~ 282 (512)
.++...|+|+ +-.++..++.....+...+....
T Consensus 229 DysRy~~~~~-~~~~~~~~~~~~~~~~~~~~g~~ 261 (442)
T TIGR00800 229 DFTRFGKSKK-TAIWGQFLALPGGFTLTCFFGIL 261 (442)
T ss_pred hhhhhcCCcc-chHHHHHHHHHHHHHHHHHHHHH
Confidence 8999998864 44566666655554444443333
No 67
>PRK11017 codB cytosine permease; Provisional
Probab=98.29 E-value=0.0066 Score=61.80 Aligned_cols=220 Identities=11% Similarity=0.019 Sum_probs=106.2
Q ss_pred ccccchHHHHHHHHHHhhhhhhHHHHHHhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC-hhhHHHhhccC
Q 010352 18 RREMTLFKTFAISFSTMTLFTGIIPLYGSSLLYAGPASLVWGWVVVSFFTWFVGLAMAEICSSFPTTG-SLYFWAAHLAS 96 (512)
Q Consensus 18 ~r~l~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~G~~~~~~~~ii~~l~~~~~a~~~~el~~~~p~~G-G~y~~~~~~~g 96 (512)
+|+ ++++....-.+....... +...+....--+...++++.+++-++........+..+. +.| ......|..
T Consensus 8 ~r~-~~~~~~~~~~g~~~~~~~-~~~g~~l~~GLs~~~ai~aiilG~~i~~~~~~l~~~~G~---k~G~~~~v~sR~~-- 80 (404)
T PRK11017 8 ARK-GVLSLTMVMLGFTFFSAS-MWAGGTLGTGLSFVDFLLAVLIGNLLLGIYTAALGYIGA---KTGLSTHLLARFS-- 80 (404)
T ss_pred Hhc-chHhHHHHHHHHHHHHHH-HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh---ccCcCHHHHHHHH--
Confidence 455 777765554444332122 222221111122222566666665544443333444444 444 455666777
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccCchHHHHHHHHHHHHHHHHHHhchhhHHH
Q 010352 97 PKWGPFASWCCAWLETIGLIAGMGTQAYAGSQTLQSIILLCTGTNKDGGYFAPKWLFLCMYIGLTIIWAVLNTFALEVIA 176 (512)
Q Consensus 97 ~~~g~~~g~~~g~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~k~~~ 176 (512)
+|.+-+.+.+....+..+...+......+..+.... +. +.... .+++.++.......|.|...
T Consensus 81 --FG~~Gs~l~~~~~~i~~igW~av~~~~~~~~l~~~~----------~~--~~~~~---~~i~~~l~~~~~~~G~~~i~ 143 (404)
T PRK11017 81 --FGEKGSWLPSLLLGFTQVGWFGVGVAMFAIPVVKAT----------GL--DINLL---IVLSGLLMTVTAYFGISALT 143 (404)
T ss_pred --hchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh----------CC--CHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 444445566666665555555666665555555433 12 12221 22333445666678888888
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhccccccccccccccccccCCCCCCCchhHHHHhhhhhhhh-hccccccchhhhhcc
Q 010352 177 FIDIISMWWQVAGGLVIIIMLPLVALTTQSASYVFTHFEMSPEATGISSKPYAVILSFLVSQYS-LYGYDSAAHLTEETK 255 (512)
Q Consensus 177 ~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-f~G~e~~~~~~~E~k 255 (512)
+++++......+..+...+..+...+ + ..+. . +. .+.+. .++..++...+-. ..+.-..+.++...|
T Consensus 144 ~~~~~~~p~~~~~~~~~~~~~~~~~~-g-~~~~-~-~~----~~~~~----~~~~~a~~~~~g~~~~~~~~~~DysRy~k 211 (404)
T PRK11017 144 ILSRIAVPAIALLGGYSVWLAVNDVG-G-LDGL-K-AI----VPAEP----LDFSAALTLVVGSFISGGTLTADFVRFGR 211 (404)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccC-c-hhhh-h-cC----CCCCc----ccHHHHHHHHHHHHHHhHhcCCChHhhcc
Confidence 88887776665544444333332221 1 1111 1 11 11111 1244444332222 244556788999998
Q ss_pred CcccccchHHHHHHHHHHH
Q 010352 256 GADKTGPIAILSSIGIISI 274 (512)
Q Consensus 256 ~P~k~ip~ai~~~~~~~~i 274 (512)
+|++ .-.+...+..+...
T Consensus 212 ~~~~-~~~~~~lg~~i~~~ 229 (404)
T PRK11017 212 SAKI-AVLATMVAFFLGNS 229 (404)
T ss_pred Cccc-eeehhHHHHHHHHH
Confidence 8654 44566665544333
No 68
>TIGR00813 sss transporter, SSS family. have different numbers of TMSs. A 13 TMS topology with a periplasmic N-terminus and a cytoplasmic C-terminus has been experimentally determined for the proline:Na+ symporter, PutP, of E. coli.
Probab=98.26 E-value=0.0014 Score=67.07 Aligned_cols=162 Identities=12% Similarity=0.082 Sum_probs=90.2
Q ss_pred ccccchHHHHHHHHHHhhhhhhHHHHHHhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChhhHHHhhccCC
Q 010352 18 RREMTLFKTFAISFSTMTLFTGIIPLYGSSLLYAGPASLVWGWVVVSFFTWFVGLAMAEICSSFPTTGSLYFWAAHLASP 97 (512)
Q Consensus 18 ~r~l~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~G~~~~~~~~ii~~l~~~~~a~~~~el~~~~p~~GG~y~~~~~~~g~ 97 (512)
.|+++++.......++..+.......++.++.. |.. .++..+...+.....++.+.+.-++.+ .-...+|.++-+|+
T Consensus 2 gr~~~~~~~~~s~~at~~s~~t~ig~~~~~y~~-G~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~T~~e~l~~Ryg~ 78 (407)
T TIGR00813 2 GRSLGGWVVAASLFASYISASQFLGLPGAIYAY-GFA-IGFYELGALVLLIILGWLFVPIFINNG-AYTMPEYLEKRFGK 78 (407)
T ss_pred CCCCCcHHHHHHHHHHHhhHHHHhcCcHHHHHH-HHH-HHHHHHHHHHHHHHHHHHHHHHHHHcC-CCchhHHHHHHhCc
Confidence 478888877776666666534444444444443 433 333333333445556666666655543 45677777776554
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccCchHHHHHHHHHHHHHHHHHHhchhhHHHH
Q 010352 98 KWGPFASWCCAWLETIGLIAGMGTQAYAGSQTLQSIILLCTGTNKDGGYFAPKWLFLCMYIGLTIIWAVLNTFALEVIAF 177 (512)
Q Consensus 98 ~~g~~~g~~~g~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~k~~~~ 177 (512)
+ ....+.+....+..+...+......+..++.+++. +.+...++..++ .......-|.|....
T Consensus 79 ~---~~~~~~~~~~i~~~~~~~~~q~~g~~~il~~~~gi------------~~~~~~ii~~~i--~~~Yt~~GG~~av~~ 141 (407)
T TIGR00813 79 R---ILRGLSVLSLILYIFLYMSVDLFSGALLIELITGL------------DLYLSLLLLGAI--TILYTVFGGLKAVVW 141 (407)
T ss_pred h---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc------------hHHHHHHHHHHH--HHHHHHHcchHHHHH
Confidence 3 34556666666777777888888888888876532 333333333222 233345567776666
Q ss_pred HHHHHHHHHHHHHHHHHHhhhh
Q 010352 178 IDIISMWWQVAGGLVIIIMLPL 199 (512)
Q Consensus 178 ~~~~~~~~~i~~~~~~~i~~~~ 199 (512)
...+=..+.++..++..+..+.
T Consensus 142 Td~iQ~~i~~~~~i~~~~~~~~ 163 (407)
T TIGR00813 142 TDTIQAVIMILGTFILPVFAFS 163 (407)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5544455544444444443333
No 69
>TIGR02121 Na_Pro_sym sodium/proline symporter. This family consists of the sodium/proline symporter (proline permease) from a number of Gram-negative and Gram-positive bacteria and from the archaeal genus Methanosarcina. Using the related pantothenate permease as an outgroup, candidate sequences from Bifidobacterium longum and several from archaea are found to be outside the clade defined by known proline permeases. These sequences, scoring between 570 and -40, define the range between trusted and noise cutoff scores.
Probab=98.25 E-value=0.0099 Score=62.21 Aligned_cols=164 Identities=12% Similarity=-0.019 Sum_probs=77.3
Q ss_pred ccccchHHHHHHHHHHhhhhhhHHHHHHhhhhcCCchhHHHHHHHHHHH-HHHHHHHHHHHHhhcC----CCChhhHHHh
Q 010352 18 RREMTLFKTFAISFSTMTLFTGIIPLYGSSLLYAGPASLVWGWVVVSFF-TWFVGLAMAEICSSFP----TTGSLYFWAA 92 (512)
Q Consensus 18 ~r~l~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~G~~~~~~~~ii~~l~-~~~~a~~~~el~~~~p----~~GG~y~~~~ 92 (512)
.|+++++-......++..+.......++..+. .|.. ..+.. .+..+ .+...+.+++--+++. +.-..++|.+
T Consensus 35 gr~~~~~~~~~s~~At~~s~~~~~G~~g~~y~-~G~~-~~~~~-~g~~~~~~~~~~~~~~~~r~~~~~~~~~~T~~e~l~ 111 (487)
T TIGR02121 35 GRSLGPFVTALSAGASDMSGWLLMGLPGALYV-TGLS-ELWIA-IGLTIGAYINWKFVAPRLRVYTEAAHNSITLPDFFE 111 (487)
T ss_pred CCcccHHHHHHHHHHHHHhHHHHHhhHHHHHH-hhHH-HHHHH-HHHHHHHHHHHHHHHHHHHHHhHhhcCCccHHHHHH
Confidence 57888876654444444431222223333433 3543 22221 22222 2223334444333322 2345788888
Q ss_pred hccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccCchHHHHHHHHHHHHHHHHHHhchh
Q 010352 93 HLASPKWGPFASWCCAWLETIGLIAGMGTQAYAGSQTLQSIILLCTGTNKDGGYFAPKWLFLCMYIGLTIIWAVLNTFAL 172 (512)
Q Consensus 93 ~~~g~~~g~~~g~~~g~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~ 172 (512)
+=+|++- +....+.+....+......+......+..++.+++. +.+...++..+ +.......-|.
T Consensus 112 ~Ryg~~~-~~~~~~~ai~~~~~~~~~~~~~l~~~~~~l~~~~gi------------~~~~~iii~~~--i~~~Yt~~GGl 176 (487)
T TIGR02121 112 NRFNDKS-RLLRIISALIILVFFTIYTSSGLVAGGKLFESTFGL------------DYKTGLLIGAL--IIVIYTFFGGF 176 (487)
T ss_pred HHhCCCC-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc------------cHHHHHHHHHH--HHHHHHHhhhH
Confidence 8766532 333444554444445555666666667777765422 33333333222 23344455566
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 010352 173 EVIAFIDIISMWWQVAGGLVIIIMLPL 199 (512)
Q Consensus 173 k~~~~~~~~~~~~~i~~~~~~~i~~~~ 199 (512)
|.......+=.++.++..+++.+..+.
T Consensus 177 ~av~~TD~iQ~~i~~~~~~~v~~~~~~ 203 (487)
T TIGR02121 177 LAVSWTDFVQGLLMFFALVLVPIVALF 203 (487)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666665544455544444434333333
No 70
>COG0733 Na+-dependent transporters of the SNF family [General function prediction only]
Probab=98.21 E-value=0.0079 Score=60.09 Aligned_cols=247 Identities=13% Similarity=0.117 Sum_probs=132.2
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHhhhhc-CCchhHHHHHHHHHHHHHHHHHHHHHHH--hhcCCCChhhHHHhhccCCCCC
Q 010352 24 FKTFAISFSTMTLFTGIIPLYGSSLLY-AGPASLVWGWVVVSFFTWFVGLAMAEIC--SSFPTTGSLYFWAAHLASPKWG 100 (512)
Q Consensus 24 ~~~~~~~~~~~~~~~gi~~~~~~~~~~-~G~~~~~~~~ii~~l~~~~~a~~~~el~--~~~p~~GG~y~~~~~~~g~~~g 100 (512)
...+.-++|+-+| -|-....+..... +|.+ -++-|++. ++.+-.-+..+|.+ ++..+ +..-.| ++..+++..
T Consensus 12 lGFILAa~GsAVG-LGNiWrFPy~~~~nGGgA-Fll~yli~-~l~~GiPlli~Ef~iGr~~~~-~~~~a~-~~l~~~~~~ 86 (439)
T COG0733 12 LGFILAAAGSAVG-LGNIWRFPYMAGENGGGA-FLLPYLIF-LLLVGIPLLLAEFAIGRRGRK-NAVGAF-RKLAPKKKW 86 (439)
T ss_pred HHHHHHHHHHHhc-ccccccCCeEeeecCcch-HHHHHHHH-HHHHhHHHHHHHHHhhhhcCC-ChhHHH-HHhccCccc
Confidence 3444445555544 4444444554444 5554 44444443 33334445567775 44432 222222 343333344
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCCCC--------ccCchHHHHHHHHHHHHHHHHHHhch
Q 010352 101 PFASWCCAWLETIGLIAGMGTQAYAGSQTLQSIILLCTGT-NKDGG--------YFAPKWLFLCMYIGLTIIWAVLNTFA 171 (512)
Q Consensus 101 ~~~g~~~g~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~--------~~~~~~~~~~i~~~~~~~~~~~~~~g 171 (512)
+ ..||.-..........+....+-.+.+++....+. ....+ ...+++......+.+..+...+-.+|
T Consensus 87 ~----~~G~~gv~~~~~i~sfYsvI~GWil~Y~~~s~tg~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~lt~~iv~~G 162 (439)
T COG0733 87 E----WIGWFGVLGGFLILSFYSVIGGWILSYLVKSLTGALPDTGEQFAQLFGQTISNPGLAVIFHLLFLVLTALIVSRG 162 (439)
T ss_pred h----hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCChhHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHh
Confidence 4 44555455545555555555555555544432211 00011 11224444444456666777888889
Q ss_pred hhH-HHHHHHHHHHHHHHHHHHHHHhhhhhccccccccccccccccccCCCCCCCchhHHHHhhhhhhhhh-ccccccch
Q 010352 172 LEV-IAFIDIISMWWQVAGGLVIIIMLPLVALTTQSASYVFTHFEMSPEATGISSKPYAVILSFLVSQYSL-YGYDSAAH 249 (512)
Q Consensus 172 ~k~-~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f-~G~e~~~~ 249 (512)
++. ..|.+.+++-...+.++++.+-.+...+....-++-+ .|+.+...+ +..+..+...++|+. .|+-..-.
T Consensus 163 V~~GIEk~~kimMP~Lfvl~i~Lvi~~~tLpGA~~G~~f~l-----~PD~s~l~~-~~v~~~AlGQ~FFsLSlG~g~mit 236 (439)
T COG0733 163 VKKGIEKANKIMMPLLFVLFIILVIRAVTLPGAMEGLKFLF-----KPDFSKLTD-PKVWLAALGQAFFSLSLGFGIMIT 236 (439)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHcCccHHHHHHHHh-----cCCHHHcCc-hhhHHHHHHHHHHHHHHHHHHHHH
Confidence 988 7888877777766666666665555422111111111 123333332 344777888888887 68888788
Q ss_pred hhhhccCcccccchHHHHHHHHHHHHHHHHHHHHHHh
Q 010352 250 LTEETKGADKTGPIAILSSIGIISIFGWALILALCFS 286 (512)
Q Consensus 250 ~~~E~k~P~k~ip~ai~~~~~~~~i~y~~~~~~~~~~ 286 (512)
+++-.++ +.|+++.-......-..+-++..+++...
T Consensus 237 YsSYL~k-~~~l~~sa~~v~~~n~~~s~lAGl~Ifpa 272 (439)
T COG0733 237 YSSYLSK-KSDLVSSALSIVLLNTLISLLAGLVIFPA 272 (439)
T ss_pred HHhhcCc-ccchhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888876 78899888877777766666655555433
No 71
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)). They function by a Na+ or H+ symport mechanism and display 12 putative transmembrane helical spanners.; GO: 0015658 branched-chain aliphatic amino acid transmembrane transporter activity, 0015803 branched-chain aliphatic amino acid transport, 0016021 integral to membrane
Probab=98.17 E-value=0.0054 Score=61.88 Aligned_cols=186 Identities=13% Similarity=0.026 Sum_probs=104.1
Q ss_pred chHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccccccccccccCCCCCCCch-
Q 010352 149 PKWLFLCMYIGLTIIWAVLNTFALEVIAFIDIISMWWQVAGGLVIIIMLPLVALTTQSASYVFTHFEMSPEATGISSKP- 227 (512)
Q Consensus 149 ~~~~~~~i~~~~~~~~~~~~~~g~k~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 227 (512)
+.+......+++..+...+.++.-|...++.++++-+.++.++++++.++.......... .+++...|-..|+..+.
T Consensus 114 ~~~~~~ifs~iFF~i~~~l~~~p~kivd~iGk~LTP~LL~~l~ilii~~i~~p~g~~~~~--~~~y~~~~f~~Gf~eGY~ 191 (427)
T PF05525_consen 114 SNISLLIFSIIFFAITYLLSLNPSKIVDRIGKFLTPILLILLAILIIKGIFSPIGPPQAP--SGAYASNPFFKGFLEGYQ 191 (427)
T ss_pred cccchhhhhHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcccc--chhhhhhHHHHHHHHHHh
Confidence 344556666778888899999999999999999999999999999998888643221111 01110000001111100
Q ss_pred -hHHHHhhhhhhhhhccccccchhhhhccCc---ccccchHHHHHHHHHHHHHHHHHHHHHHhccChhhhhcCCCcccCC
Q 010352 228 -YAVILSFLVSQYSLYGYDSAAHLTEETKGA---DKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNETAGA 303 (512)
Q Consensus 228 -~~~~~~~~~~~~~f~G~e~~~~~~~E~k~P---~k~ip~ai~~~~~~~~i~y~~~~~~~~~~~~~~~~l~~~~~~~~~~ 303 (512)
++.+.++. |...-..+--....||+ +|..-++-.++.+...++|....+.-.... +...++.
T Consensus 192 TMD~laal~-----Fg~iIi~~i~~~g~~~~k~~~~~~~~ag~ia~~lL~~IY~gL~~lGa~~~---~~~~~~~------ 257 (427)
T PF05525_consen 192 TMDALAALA-----FGIIIINAIRQKGYKDKKEIKKYTIKAGLIAGILLALIYGGLAYLGATSS---GSFPDDI------ 257 (427)
T ss_pred hhhHHHHHH-----HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCc---ccccCCC------
Confidence 11222222 22222222222233332 334444445555555666665555433322 1111111
Q ss_pred CcHHHHHHHHhhcccCCcchhHHHHHHHHHHHHHhHHHHHhhhhhhHHh
Q 010352 304 FVPAQILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYA 352 (512)
Q Consensus 304 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~ 352 (512)
+-.+.+....+..+|.. +..++.+...++|+++..+...+.+....+
T Consensus 258 -~g~~lL~~i~~~~~G~~-G~~ll~iiv~lACLTTaIGL~~a~a~yf~~ 304 (427)
T PF05525_consen 258 -NGAELLSQIANHLFGSA-GQILLGIIVFLACLTTAIGLISACAEYFSE 304 (427)
T ss_pred -CHHHHHHHHHHHHcChh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12255555555555555 788899999999999999999998877653
No 72
>PRK12488 acetate permease; Provisional
Probab=98.14 E-value=0.018 Score=61.08 Aligned_cols=162 Identities=8% Similarity=0.010 Sum_probs=84.6
Q ss_pred ccccchHHHHHHHHHHhhhhhhHHHHHHhhhhcCCchhHHHHHHHHHHHHHH-HHHHHHHHHhhcCCCChhhHHHhhccC
Q 010352 18 RREMTLFKTFAISFSTMTLFTGIIPLYGSSLLYAGPASLVWGWVVVSFFTWF-VGLAMAEICSSFPTTGSLYFWAAHLAS 96 (512)
Q Consensus 18 ~r~l~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~G~~~~~~~~ii~~l~~~~-~a~~~~el~~~~p~~GG~y~~~~~~~g 96 (512)
.|+++++.......++..+.....-.++..+. .|.. .++ +.++.....+ ..+.+++--++.. .-..++|.++=++
T Consensus 66 GR~l~~~~~~~si~at~~Sa~sflG~~G~~y~-~G~~-~~~-~~~g~~~g~~~~~~~~a~~lr~~g-~~T~~d~l~~Rf~ 141 (549)
T PRK12488 66 GGGLTGMQNGLAIAGDMISAASFLGISAMMFM-NGYD-GLL-YALGVLAGWPIILFLIAERLRNLG-KYTFADVVSYRLA 141 (549)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH-hChh-HHH-HHHHHHHHHHHHHHHHHHHHHHCC-CcchHHHHHHHcC
Confidence 57899887776666666553333334444443 4443 222 2233332222 2333444444432 2355666655544
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccCchHHHHHHHHHHHHHHHHHHhchhhHHH
Q 010352 97 PKWGPFASWCCAWLETIGLIAGMGTQAYAGSQTLQSIILLCTGTNKDGGYFAPKWLFLCMYIGLTIIWAVLNTFALEVIA 176 (512)
Q Consensus 97 ~~~g~~~g~~~g~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~k~~~ 176 (512)
. +....+.+....+....+........+..++.+++. +.+...++..++. ......-|.|...
T Consensus 142 s---~~~r~laai~~i~~~~~yl~~q~~g~g~il~~l~gi------------~~~~~iii~~~i~--~~Yt~~GGm~av~ 204 (549)
T PRK12488 142 Q---GPVRLTAAFGTLTVVLMYLVAQMVGAGKLIELLFGI------------SYLYAVVIVGALM--VLYVTFGGMLATT 204 (549)
T ss_pred C---CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC------------CHHHHHHHHHHHH--HHHHhccchhHHH
Confidence 2 334667776666666777777777777777776422 3333333333322 2333455888777
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhh
Q 010352 177 FIDIISMWWQVAGGLVIIIMLPLV 200 (512)
Q Consensus 177 ~~~~~~~~~~i~~~~~~~i~~~~~ 200 (512)
+.+.+=.++.++..++..+..+..
T Consensus 205 ~td~iQ~~im~~~~i~~~~~~l~~ 228 (549)
T PRK12488 205 WVQIIKAVLLLSGTSFMAFMVLKH 228 (549)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 766555555555554444444433
No 73
>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells. Thereby the energy stored in an inwardly directed electrochemical sodium gradient (sodium motive force, SMF) is used to drive solute accumulation against a concentration gradient. The SMF is generated by primary sodium pumps (e.g. sodium/potassium ATPases, sodium translocating respiratory chain complexes) or via the action of sodium/proton antiporters. Sodium/substrate transporters are grouped in different families based on sequence similarities [, ]. One of these families, known as the sodium:solute symporter family (SSSF), contains over a hundred members of pro- and eukaryotic origin []. The average hydropathy plot for SSSF proteins predicts 11 to 15 putative transmembrane domains (TMs) in alpha-helical conformation. A secondary structure model of PutP from Escherichia coli suggests the protein contains 13 TMs with the N terminus located on the periplasmic side of the membrane and the C terminus facing the cytoplasm. The results support the idea of a common topological motif for members of the SSSF. Transporters with a C-terminal extension are proposed to have an additional 14th TM. An ordered binding model of sodium/substrate transport suggests that sodium binds to the empty transporter first, thereby inducing a conformational alteration which increases the affinity of the transporter for the solute. The formation of the ternary complex induces another structural change that exposes sodium and substrate to the other site of the membrane. Substrate and sodium are released and the empty transporter re-orientates in the membrane allowing the cycle to start again.; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3DH4_D 2XQ2_A.
Probab=98.14 E-value=0.00076 Score=68.93 Aligned_cols=304 Identities=14% Similarity=0.037 Sum_probs=126.4
Q ss_pred ccccchHHHHHHHHHHhhhhhhHHHHHHhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChhhHHHhhccCC
Q 010352 18 RREMTLFKTFAISFSTMTLFTGIIPLYGSSLLYAGPASLVWGWVVVSFFTWFVGLAMAEICSSFPTTGSLYFWAAHLASP 97 (512)
Q Consensus 18 ~r~l~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~G~~~~~~~~ii~~l~~~~~a~~~~el~~~~p~~GG~y~~~~~~~g~ 97 (512)
.|+++++.......++..+.......++..+ ..|.. ..+..+...+.....++.++.--++. +.-...+|.++-+|+
T Consensus 5 gr~~~~~~~~~s~~at~~s~~t~~G~~g~~y-~~G~~-~~~~~~~~~~~~~~~~~~~~~~~r~~-~~~T~~e~~~~Ryg~ 81 (406)
T PF00474_consen 5 GRSLGWWVVAFSLVATWISAWTFIGFPGFAY-SYGIS-GLWYAIGYAIGFLLFALFFAPRLRRS-GAVTIPEYLEKRYGS 81 (406)
T ss_dssp -S---HHHHHHHHHHHHSSHHHHTHHHHHHH-HT-GG-GGHHHHHHHHHHHHHHHHTHHHHHHT-T--SHHHHHHHHT-H
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHhh-cCCcc-eeeeccccchhHHHHHHHHHHhhccc-chhhhhhhhhhhcCC
Confidence 4788888777766676666333333344444 34554 33333333333444444445444433 345777888877444
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccCchHHHHHHHHHHHHHHHHHHhchhhHHHH
Q 010352 98 KWGPFASWCCAWLETIGLIAGMGTQAYAGSQTLQSIILLCTGTNKDGGYFAPKWLFLCMYIGLTIIWAVLNTFALEVIAF 177 (512)
Q Consensus 98 ~~g~~~g~~~g~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~k~~~~ 177 (512)
+. ....+.+....+..+...+......+..++.+++. +.....++. .++.......-|.|...+
T Consensus 82 ~~--~~~~~~~i~~i~~~~~~~~~q~~~~~~~~~~~~gi------------~~~~~~~i~--~~i~~iYt~~GGl~av~~ 145 (406)
T PF00474_consen 82 KA--LLRILAAIIIIVFMIPYLAAQLVGGGALLSVLFGI------------PYNTAILIV--GVIVIIYTFFGGLRAVAW 145 (406)
T ss_dssp HH---HHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT--------------HHHHHHHH--HHHHHHTTCTT------S
T ss_pred ch--hhhhhcccccchhhhhhhhccccccccchhhccch------------hhhHHHHHH--HHHHHHhhhhhhHhhhhH
Confidence 42 01344444445555666677777777777765422 222223322 222233444557776665
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhccccccc--c-----ccccccccccCCCCCCCchhHHHHhhhhhhhhhccccccchh
Q 010352 178 IDIISMWWQVAGGLVIIIMLPLVALTTQSA--S-----YVFTHFEMSPEATGISSKPYAVILSFLVSQYSLYGYDSAAHL 250 (512)
Q Consensus 178 ~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~--~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~ 250 (512)
...+-.++.++..++..+..+...+..... + ....+. . ++.+.+. ................|.....+.
T Consensus 146 td~iQ~~i~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~-~--~~~~~~~-~~~~~~~~~~~~~~~~g~~~~p~~ 221 (406)
T PF00474_consen 146 TDFIQGVIMIIGAIVVLIFVLSAVGGFGGLFQNLSAAHPNFLDL-F--NPGGFSM-FSSPLFFLSFWIALMLGTFGAPHF 221 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-GGGG-S-S----SS------SSGGGGS-TTHHHHSTHHH-HH
T ss_pred HHHHHHHHHHHHHHHhhhccchhcCCchhhHHHHhhcCcccccc-c--CCCCccc-ccchhhhHHHHHHHHhhhccchHH
Confidence 444444444444444444444332211000 0 000111 1 1111100 000111111101112233333333
Q ss_pred hhh---ccCcccccchHHHHHHHHHHHHHHHHHHHHHHh---ccChhhhhcCCCcccCCCcHHHHHHHHhhcccCCcchh
Q 010352 251 TEE---TKGADKTGPIAILSSIGIISIFGWALILALCFS---IQDFSYLYDKSNETAGAFVPAQILYDAFHGRYHNSTGA 324 (512)
Q Consensus 251 ~~E---~k~P~k~ip~ai~~~~~~~~i~y~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 324 (512)
... .|| +|+..|+...+.....+++.......... .+..++....+. +++- ..+.....+. .+++..
T Consensus 222 ~qR~~aak~-~~~ar~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~----~~~~-~~~~~~~~~~-~p~~~~ 294 (406)
T PF00474_consen 222 WQRFLAAKS-PKTARKGMLIAIIFLIIFYFLTIFIGLIAIALFGLYPDAAGPSL----GDPD-LAFPYLAAQY-LPPGLA 294 (406)
T ss_dssp HHHHHSSSH-HHHHHHHHHHHHGGGTTHHHHHHHHHHHH-HHHHHH-TT--S-S----SSGG-GHHHHHHT-T-S-TTHH
T ss_pred HHHHHhcCC-HHHHHHHHhHHhhhheeeehHHhhhhhhhhcccccccccccccc----cCCc-ccchhhhhhh-ccchhH
Confidence 333 355 36788888877665555544422111111 101111111111 1111 2233333333 445566
Q ss_pred HHHHHHHHHHHHHhHHHHHhhhhhhHH
Q 010352 325 IILLIVIWGSFFFGGLSVTTSAARVVY 351 (512)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~sR~l~ 351 (512)
-++..+++.+..++..+.+.+.+-.+.
T Consensus 295 gl~~~~~~aA~~ST~~s~l~a~ss~~~ 321 (406)
T PF00474_consen 295 GLFLAGILAAIMSTADSLLLAISSIFS 321 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHhhhhhhhh
Confidence 677777888888999888888877653
No 74
>PRK00701 manganese transport protein MntH; Reviewed
Probab=98.08 E-value=0.0024 Score=65.34 Aligned_cols=35 Identities=11% Similarity=-0.029 Sum_probs=20.4
Q ss_pred HHhhcccCCcchhHHHHHHHHHHHHHhHHHHHhhhh
Q 010352 312 DAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAA 347 (512)
Q Consensus 312 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~s 347 (512)
+.+++.+|+ +...+..++++.+.+++..+...++.
T Consensus 298 ~~L~p~~G~-~a~~lFaiGL~aag~sS~i~~~~a~~ 332 (439)
T PRK00701 298 LLLSPLLGA-AAATLFGIALLASGLSSTVVGTLAGQ 332 (439)
T ss_pred HHHHHHHhH-HHHHHHHHHHHHhHhHHHhHHHHHHH
Confidence 344444453 36777777777776666655444443
No 75
>COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only]
Probab=98.01 E-value=0.029 Score=58.64 Aligned_cols=159 Identities=10% Similarity=-0.060 Sum_probs=88.6
Q ss_pred cccccchHHHHHHHHHHhhhhhhHHHHHHhhhhcCCchhHHHHHH---HHHHHHHHHHHHHHHHHhhcCCCChhhHHHhh
Q 010352 17 LRREMTLFKTFAISFSTMTLFTGIIPLYGSSLLYAGPASLVWGWV---VVSFFTWFVGLAMAEICSSFPTTGSLYFWAAH 93 (512)
Q Consensus 17 l~r~l~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~G~~~~~~~~i---i~~l~~~~~a~~~~el~~~~p~~GG~y~~~~~ 93 (512)
-.|+++.+ ..+++.+..--+...+...+......|....++... ...+.....+--..+++ +.++.-...+|.++
T Consensus 36 ~gR~lg~~-v~~ls~~as~~s~~t~lG~~g~ay~~G~~~~~~~~~~~~~~~~~~~~~~~rl~~~~-~~~~~~T~~d~l~~ 113 (493)
T COG0591 36 GGRSLGPF-VYALSAAASDTSGWTFLGLPGLAYASGLSGLWIAIGLLIGAFLLWLLFAPRLRRLA-KARGATTIPDFLEA 113 (493)
T ss_pred cCCcCChH-HHHHHHHHHHHHHHHHhcchHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cccCCccHHHHHHH
Confidence 36888988 444444433221233333333334445542333222 22233344444555555 44556678888888
Q ss_pred ccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccCchHHHH-HHHHHHHHHHHHHHhchh
Q 010352 94 LASPKWGPFASWCCAWLETIGLIAGMGTQAYAGSQTLQSIILLCTGTNKDGGYFAPKWLFL-CMYIGLTIIWAVLNTFAL 172 (512)
Q Consensus 94 ~~g~~~g~~~g~~~g~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~~~~g~ 172 (512)
-+|+ +....+.+....+..+.+.+......+..++..++ .+..... ..+.+++.....--++++
T Consensus 114 Rf~s---~~lr~l~ali~iv~~i~yia~ql~~~~~~~~~~~g------------i~~~~~~~~~~~~v~~Yt~~gG~~av 178 (493)
T COG0591 114 RFGS---KILRILSALIIIVFFIPYIALQLVAGGLLLSLLFG------------ISYVTGILIGALIVALYTFLGGLRAV 178 (493)
T ss_pred HcCC---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC------------CCHHHHHHHHHHHHHHHHHHcChhHH
Confidence 7553 66788888888888899999999999888866542 1333222 233344444444455566
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q 010352 173 EVIAFIDIISMWWQVAGGLV 192 (512)
Q Consensus 173 k~~~~~~~~~~~~~i~~~~~ 192 (512)
.++..+|.....+.+..+.+
T Consensus 179 ~~Td~iqg~im~i~~~~~~i 198 (493)
T COG0591 179 VWTDFIQGLIMLIALIVIPI 198 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 66666775554444443333
No 76
>PF01566 Nramp: Natural resistance-associated macrophage protein; InterPro: IPR001046 The natural resistance-associated macrophage protein (NRAMP) family consists of Nramp1, Nramp2, and yeast proteins Smf1 and Smf2. The NRAMP family is a novel family of functionally related proteins defined by a conserved hydrophobic core of ten transmembrane domains []. Nramp1 is an integral membrane protein expressed exclusively in cells of the immune system and is recruited to the membrane of a phagosome upon phagocytosis. Nramp2 is a multiple divalent cation transporter for Fe2+, Mn2+ and Zn2+ amongst others. It is expressed at high levels in the intestine; and is major transferrin-independent iron uptake system in mammals []. The yeast proteins Smf1 and Smf2 may also transport divalent cations []. The natural resistance of mice to infection with intracellular parasites is controlled by the Bcg locus, which modulates the cytostatic/cytocidal activity of phagocytes. Nramp1, the gene responsible, is expressed exclusively in macrophages and poly-morphonuclear leukocytes, and encodes a polypeptide (natural resistance-associated macrophage protein) with features typical of integral membrane proteins. Other transporter proteins from a variety of sources also belong to this family.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane
Probab=97.94 E-value=0.021 Score=57.28 Aligned_cols=45 Identities=13% Similarity=0.125 Sum_probs=35.7
Q ss_pred HHHHhhcccCCcchhHHHHHHHHHHHHHhHHHHHhhhhhhHHhhh
Q 010352 310 LYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALS 354 (512)
Q Consensus 310 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~ma 354 (512)
..+.+.+.+|.++...++.++.+.+.+++..+...+.++.+.+.-
T Consensus 241 ~~~~L~~~~G~~~a~~lF~igl~~a~fss~i~~~~~~~~~~~~~~ 285 (358)
T PF01566_consen 241 AAQALEPLLGSPWARYLFAIGLFAAGFSSSITATLAGAYVLADFL 285 (358)
T ss_pred HHHHHHHhcCchHHHHhHHHHHHHHHHhhHHHhccccceehHhhh
Confidence 445566666766688899999999999999999988888877654
No 77
>COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism]
Probab=97.88 E-value=0.033 Score=55.04 Aligned_cols=185 Identities=11% Similarity=0.030 Sum_probs=95.0
Q ss_pred chHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccccccccccccCCCCCCCchh
Q 010352 149 PKWLFLCMYIGLTIIWAVLNTFALEVIAFIDIISMWWQVAGGLVIIIMLPLVALTTQSASYVFTHFEMSPEATGISSKPY 228 (512)
Q Consensus 149 ~~~~~~~i~~~~~~~~~~~~~~g~k~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (512)
+.....+..+++..+...+.+..-|...|+..+++-++++.++++.+..+........+ .-+.+...|-..|+.. +.
T Consensus 116 ~~~~l~ifs~ifF~ia~~~sl~psklid~vGk~LTPilLv~l~il~i~~~~~p~g~~~~--a~~~y~~~pf~~Gfle-GY 192 (431)
T COG1114 116 SLPSLFIFSVIFFAIAYLFSLNPSKLIDRVGKFLTPILLVLLLILVIAAIIPPAGPISA--ASGAYQSQPFSKGFLE-GY 192 (431)
T ss_pred cchHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCCccc--ccHHHHhChHHHHHhc-ch
Confidence 34445566677778888999999999999999999999999888888876653221110 0111100011122222 11
Q ss_pred HHHHhhhhhhhhhccccccchhhhhccCcccccchHHHHH----HHHHHHHHHHHHHHHHHhccChhhhhcCCCcccCCC
Q 010352 229 AVILSFLVSQYSLYGYDSAAHLTEETKGADKTGPIAILSS----IGIISIFGWALILALCFSIQDFSYLYDKSNETAGAF 304 (512)
Q Consensus 229 ~~~~~~~~~~~~f~G~e~~~~~~~E~k~P~k~ip~ai~~~----~~~~~i~y~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 304 (512)
.-+-++. ...|...-.-+.-....++++ ++.|-...+ .+....+|....+. +.. +.+...+.++ |
T Consensus 193 ~TMDaLA--al~FgivIv~alk~~g~~~~~-~~~~~~~~aglIa~i~La~iY~~L~yl--Ga~-s~~~~~~~~n----G- 261 (431)
T COG1114 193 LTMDALA--ALAFGIVIVNALKSKGVTTKK-QIIKYTIKAGLIAAILLALIYLSLFYL--GAT-SASAAGLAAN----G- 261 (431)
T ss_pred HHHHHHH--HHHHHHHHHHHHHHhccCcHH-HHHHHHHHHHHHHHHHHHHHHHHHHHh--ccc-hHhhcccccc----h-
Confidence 1112222 223333222232233334433 333333333 33333344433322 222 1111111111 2
Q ss_pred cHHHHHHHHhhcccCCcchhHHHHHHHHHHHHHhHHHHHhhhhhhH
Q 010352 305 VPAQILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVV 350 (512)
Q Consensus 305 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l 350 (512)
.+.+.+.-+..+|+- +..++.+....+|+.+..+...+++-..
T Consensus 262 --~~IL~~~s~~~fG~~-G~~lL~~iv~lACLTTaiGLi~a~aefF 304 (431)
T COG1114 262 --GQILSAYSQHLFGSY-GSILLGLIVFLACLTTAVGLIVACAEFF 304 (431)
T ss_pred --HHHHHHHHHHHhchh-hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 234444444343443 6788888899999999999888877543
No 78
>TIGR02711 symport_actP cation/acetate symporter ActP. Members of this family belong to the Sodium:solute symporter family. Both members of this family and other close homologs tend to be encoded next to a member of Pfam family pfam04341, a set of uncharacterized membrane proteins. The characterized member from E. coli is encoded near and cotranscribed with the acetyl coenzyme A synthetase (acs) gene. Proximity to an acs gene was used as one criterion for determining the trusted cutoff for this model. Closely related proteins may differ in function and are excluded by the high cutoffs of this model; members of the family of phenylacetic acid transporter PhaJ can score as high as 1011 bits.
Probab=97.84 E-value=0.064 Score=56.95 Aligned_cols=157 Identities=10% Similarity=0.009 Sum_probs=75.9
Q ss_pred ccccchHHHHHHHHHHhhhhhhHHHHHHhhhhcCCchhHHHHHHHHHHHHH-HHHHHHHHHHhhcCCCChhhHHHhhccC
Q 010352 18 RREMTLFKTFAISFSTMTLFTGIIPLYGSSLLYAGPASLVWGWVVVSFFTW-FVGLAMAEICSSFPTTGSLYFWAAHLAS 96 (512)
Q Consensus 18 ~r~l~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~G~~~~~~~~ii~~l~~~-~~a~~~~el~~~~p~~GG~y~~~~~~~g 96 (512)
.|+++++..-....++..+.....-.++..+. .|....++. ++..... ...+.++|--++.- .-...+|.++=++
T Consensus 66 Gr~~~~~~~g~si~at~~SaasflG~~G~~y~-~G~~~~~~~--~g~~~~~~i~~~~~a~~lrr~g-~~T~~d~l~~Rf~ 141 (549)
T TIGR02711 66 GGNITGFQNGLAIAGDYMSAASFLGISALVYT-SGYDGLIYS--LGFLVGWPIILFLIAERLRNLG-RYTFADVASYRLK 141 (549)
T ss_pred CCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH-hChHHHHHH--HHHHHHHHHHHHHHHHHHHHcC-CccHHHHHHHHcC
Confidence 57888876544444444442333333333333 354422222 2333322 33344555444432 2244445544333
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccCchHHHHHHHHHHHHHHHHHHhchhhHHH
Q 010352 97 PKWGPFASWCCAWLETIGLIAGMGTQAYAGSQTLQSIILLCTGTNKDGGYFAPKWLFLCMYIGLTIIWAVLNTFALEVIA 176 (512)
Q Consensus 97 ~~~g~~~g~~~g~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~k~~~ 176 (512)
+ +....+.+....+....+........+..++.+++. +.+...++..++. .....+-|.|...
T Consensus 142 s---~~~r~l~ai~~i~~~~~yl~~ql~g~g~il~~~~gi------------~~~~~iii~~~i~--~~Yt~~GGm~av~ 204 (549)
T TIGR02711 142 Q---RPIRILSACGSLVVVALYLIAQMVGAGKLIELLFGL------------NYHVAVVLVGILM--VMYVLFGGMLATT 204 (549)
T ss_pred C---cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHH--HHHHHhhhhHHHH
Confidence 2 334556666665555666666667777777666422 3333333332222 2333455777777
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 010352 177 FIDIISMWWQVAGGLVIII 195 (512)
Q Consensus 177 ~~~~~~~~~~i~~~~~~~i 195 (512)
+.+.+=.++.++..++..+
T Consensus 205 ~td~iQ~~im~~g~i~~~~ 223 (549)
T TIGR02711 205 WVQIIKAVLLLFGATFMAF 223 (549)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 7665555555554444433
No 79
>KOG1305 consensus Amino acid transporter protein [Amino acid transport and metabolism]
Probab=97.81 E-value=0.014 Score=59.02 Aligned_cols=245 Identities=10% Similarity=-0.002 Sum_probs=128.3
Q ss_pred cccchHHHHHHHHHHhhhhhhHHHHHHhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChhhHHHhhccCCC
Q 010352 19 REMTLFKTFAISFSTMTLFTGIIPLYGSSLLYAGPASLVWGWVVVSFFTWFVGLAMAEICSSFPTTGSLYFWAAHLASPK 98 (512)
Q Consensus 19 r~l~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~G~~~~~~~~ii~~l~~~~~a~~~~el~~~~p~~GG~y~~~~~~~g~~ 98 (512)
++-+....+.--.+++.| +|+...+. ++..+|-...+....+.+.+.....+.+.+.+.+.++. ..-.-.++..|+
T Consensus 4 ~~~s~~~~v~nl~~ti~G-aGIl~~P~-afk~~Giv~gi~li~~~a~~s~~sl~~l~~~a~~~~~~-ty~~l~~~~~g~- 79 (411)
T KOG1305|consen 4 GKTSFRSAVFNLVNTIMG-AGILAMPY-AFKTAGLLLGILLIVLSAFLSLLSLYLLSKCAKKSGER-TYSSLGDLIFGK- 79 (411)
T ss_pred CccchhhhHHHHHhhhhc-cHHHHhHH-HHHHhcHHHHHHHHHHHHHHHHhHHHHHHHhhhhcCCC-CHHHHHHHHcCC-
Confidence 455677777777888888 89776664 77778866566666677777778888888888888776 444444555444
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcc----CchHH-HHHHHHHHHHHHHHHHhchhh
Q 010352 99 WGPFASWCCAWLETIGLIAGMGTQAYAGSQTLQSIILLCTGTNKDGGYF----APKWL-FLCMYIGLTIIWAVLNTFALE 173 (512)
Q Consensus 99 ~g~~~g~~~g~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~-~~~i~~~~~~~~~~~~~~g~k 173 (512)
.|+......--+..++ +..+.+...+.+........ ..++. .+.+. +.+....++.-+...+ ...
T Consensus 80 ~g~~~~~v~~~~~~~g----~i~yliiigd~~p~~~~~~~----~~~~~~~~~~~~~~~ill~~~~~i~pLsl~k--~l~ 149 (411)
T KOG1305|consen 80 LGKVDAAVAVKCFGVG----MVSYLIIIGDLLPGFIRSLF----LDEEGGSHYLDRNFLILLVLLFIILPLSLLK--NLD 149 (411)
T ss_pred CceeeehhhHHhhhcc----ceEEEEEEccccchhhhhcc----cccccccccccceeEeehHHHHHHHHHHHHH--hhh
Confidence 3332222221111111 11111112222221111100 00110 11111 1222222222222222 111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccccccccccccCCCCCCCchhHHHHhhhhhhhhhccccccchhhhh
Q 010352 174 VIAFIDIISMWWQVAGGLVIIIMLPLVALTTQSASYVFTHFEMSPEATGISSKPYAVILSFLVSQYSLYGYDSAAHLTEE 253 (512)
Q Consensus 174 ~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~~~E 253 (512)
.-+....+++..++.++...+.-...... ........ . |+...+ .++..++....++|...+.....-.|
T Consensus 150 -~Lk~tS~~s~~~~~~fv~~vv~~~~~~~~---~~~~~~~~-~-~~~~~~----~~~~~~~pi~~faf~Ch~n~~~i~~E 219 (411)
T KOG1305|consen 150 -SLKYTSALSLASVVYFVVLVVYKYFQGPC---ALGRLSYL-V-PNLSSF----SSLFYALPIFVFAFTCHSNVFPIYNE 219 (411)
T ss_pred -hHHHHHHHHHHHHHHHHHHHHHHHHhccc---ccCCcccc-c-CCcchh----hhhhhhhhhhheeeeccccceeeeee
Confidence 22222222333333333333322222111 00000111 1 011112 34889999999999999999999999
Q ss_pred ccCcc-cccchHHHHHHHHHHHHHHHHHHHHHHhc
Q 010352 254 TKGAD-KTGPIAILSSIGIISIFGWALILALCFSI 287 (512)
Q Consensus 254 ~k~P~-k~ip~ai~~~~~~~~i~y~~~~~~~~~~~ 287 (512)
.|||+ |++-+....+......+|......-....
T Consensus 220 l~~~s~~~i~~v~~~~~~~~~~iy~~~g~~GYL~F 254 (411)
T KOG1305|consen 220 LKDRSVKKIQRVSNIAIILATLIYLLTGLFGYLTF 254 (411)
T ss_pred eeCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhee
Confidence 99995 67888889999999999998877766665
No 80
>PRK15419 proline:sodium symporter PutP; Provisional
Probab=97.76 E-value=0.079 Score=55.70 Aligned_cols=162 Identities=10% Similarity=-0.017 Sum_probs=76.4
Q ss_pred ccccchHHHHHHHHHHhhhhhhHHHHHHhhhhcCCchhHHHHHHHHHHHH-HHHHHHHH-HH--H-hhcCCCChhhHHHh
Q 010352 18 RREMTLFKTFAISFSTMTLFTGIIPLYGSSLLYAGPASLVWGWVVVSFFT-WFVGLAMA-EI--C-SSFPTTGSLYFWAA 92 (512)
Q Consensus 18 ~r~l~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~G~~~~~~~~ii~~l~~-~~~a~~~~-el--~-~~~p~~GG~y~~~~ 92 (512)
.|+++++.......++..+.....-.++.++ ..|.. ..+.. ++..+. +.....++ .+ . .+.++.-..++|.+
T Consensus 39 gr~l~~~~~~~s~~At~~Sa~t~iG~~g~~y-~~G~~-~~~~~-~~~~~~~~l~~~~~~~~l~~~~~~~~~~~T~~e~l~ 115 (502)
T PRK15419 39 GRSLGPFVTALSAGASDMSGWLLMGLPGAVF-LSGIS-ESWIA-IGLTLGAWINWKLVAGRLRVHTEYNNNALTLPDYFT 115 (502)
T ss_pred CCCccHHHHHHHHHHHHHHHHHHHHhhHHHH-HcCHH-HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhcCceeHHHHHH
Confidence 5889998776666666655233333334334 34544 32221 222221 11111111 11 1 11233456778887
Q ss_pred hccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccCchHHHHHHHHHHHHHHHHHHhchh
Q 010352 93 HLASPKWGPFASWCCAWLETIGLIAGMGTQAYAGSQTLQSIILLCTGTNKDGGYFAPKWLFLCMYIGLTIIWAVLNTFAL 172 (512)
Q Consensus 93 ~~~g~~~g~~~g~~~g~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~ 172 (512)
+=+|++ .+....+.+....+......+......+..++.+++ + +.+...++..+ +......+-|.
T Consensus 116 ~Ry~~~-~~~~~~~~~i~~~~~~~~~~~~ql~~~~~~l~~~~g----------i--~~~~~iii~~~--iv~iYt~~GGl 180 (502)
T PRK15419 116 GRFEDK-SRILRIISALVILLFFTIYCASGIVAGARLFESTFG----------M--SYETALWAGAA--ATILYTFIGGF 180 (502)
T ss_pred HHhCCC-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC----------C--CHHHHHHHHHH--HHHHHHHhhhH
Confidence 776553 244454555555555555666666666667766542 1 33333333222 23333445566
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhh
Q 010352 173 EVIAFIDIISMWWQVAGGLVIIIML 197 (512)
Q Consensus 173 k~~~~~~~~~~~~~i~~~~~~~i~~ 197 (512)
|...+...+=.++.++..+++.+..
T Consensus 181 ~aV~~TD~iQ~~imi~g~i~~~~~~ 205 (502)
T PRK15419 181 LAVSWTDTVQASLMIFALILTPVIV 205 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6665555444544444443333333
No 81
>TIGR03648 Na_symport_lg probable sodium:solute symporter, VC_2705 subfamily. This family belongs to a larger family of transporters of the sodium:solute symporter superfamily, TC 2.A.21. Members of this strictly bacterial protein subfamily are found almost invariably immediately downstream from a member of family TIGR03647. Occasionally, the two genes are fused.
Probab=97.68 E-value=0.11 Score=55.21 Aligned_cols=149 Identities=8% Similarity=0.000 Sum_probs=76.9
Q ss_pred ccccchHHHHHHHHHHhhhhhhHHHHHHhhhhcCCchhHH--HHHHHHHHHHHHHHHHHHHHHhhcCCCChhhHHHhhcc
Q 010352 18 RREMTLFKTFAISFSTMTLFTGIIPLYGSSLLYAGPASLV--WGWVVVSFFTWFVGLAMAEICSSFPTTGSLYFWAAHLA 95 (512)
Q Consensus 18 ~r~l~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~G~~~~~--~~~ii~~l~~~~~a~~~~el~~~~p~~GG~y~~~~~~~ 95 (512)
.|+++++.......++..+.......++..+. .|....+ +.|.++ ....++.+++.-++.. .-..++|.++=+
T Consensus 31 Gr~l~~~~~~~s~~At~~Sa~tflG~~g~~y~-~G~~~~~~~~g~~~~---~~~~~~~~~p~~rr~~-~~T~~e~l~~Rf 105 (552)
T TIGR03648 31 GRGVPPVANGMATAADWMSAASFISMAGLIAF-LGYDGLAYLMGWTGG---YVLLALLLAPYLRKFG-KYTVPDFIGDRY 105 (552)
T ss_pred CCCCchHHHHHHHHHHHHhHHHHHHHHHHHHH-hChHHHHHHHHHHHH---HHHHHHHHHHHHHHCC-CccHHHHHHHHh
Confidence 58899987666666666552333333333333 3543111 222222 2234466666666653 347888887776
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccCchHHHHHHHHHHHHHHHHHHhchhhHH
Q 010352 96 SPKWGPFASWCCAWLETIGLIAGMGTQAYAGSQTLQSIILLCTGTNKDGGYFAPKWLFLCMYIGLTIIWAVLNTFALEVI 175 (512)
Q Consensus 96 g~~~g~~~g~~~g~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~k~~ 175 (512)
+++. ...+.+....+......+......+..++.+.+. +.+...++..++. ......-|.|..
T Consensus 106 ~s~~---~~~~~~i~~~~~~~~~l~~ql~~~~~~l~~~~gi------------~~~~~iii~~~i~--~iYt~~GG~~aV 168 (552)
T TIGR03648 106 YSNT---ARLVAVICAIFISFTYVAGQMRGVGVVFSRFLEV------------DFETGVFIGMAIV--FFYAVLGGMKGV 168 (552)
T ss_pred CCCc---eehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHH--HHHHHhhhHHHH
Confidence 5442 3445555555555666666666667777666522 3344343333322 223334466666
Q ss_pred HHHHHHHHHHHHH
Q 010352 176 AFIDIISMWWQVA 188 (512)
Q Consensus 176 ~~~~~~~~~~~i~ 188 (512)
.+...+=.++.++
T Consensus 169 ~~TD~iQ~iim~i 181 (552)
T TIGR03648 169 TWTQVAQYIVLIV 181 (552)
T ss_pred HHHHHHHHHHHHH
Confidence 5544333444333
No 82
>PRK10484 putative transporter; Provisional
Probab=97.67 E-value=0.11 Score=54.92 Aligned_cols=79 Identities=10% Similarity=0.017 Sum_probs=38.6
Q ss_pred ccccchHHHHHHHHHHhhhhhhHHHHHHhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChhhHHHhhccCC
Q 010352 18 RREMTLFKTFAISFSTMTLFTGIIPLYGSSLLYAGPASLVWGWVVVSFFTWFVGLAMAEICSSFPTTGSLYFWAAHLASP 97 (512)
Q Consensus 18 ~r~l~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~G~~~~~~~~ii~~l~~~~~a~~~~el~~~~p~~GG~y~~~~~~~g~ 97 (512)
.|+++++-...-..++..+.......++.++. .|.....+.+ ...+.....++.++.--++. +.-..++|.++-+|+
T Consensus 37 gR~l~~~~~~~sl~AT~~Sa~tflG~~g~~y~-~G~~~~~~~~-~~~~~~~~~~~~~~p~~~r~-~~~T~~e~l~~Ryg~ 113 (523)
T PRK10484 37 GRSLTGPVIAGSLLLTNLSTEQLVGLNGQAYA-SGMSVMAWEV-TAAIALIILALIFLPRYLKS-GITTIPDFLEERYDK 113 (523)
T ss_pred CCCCchHHHHHHHHHHHhhHHHHhcchHHHHH-hCHHHHHHHH-HHHHHHHHHHHHHHHHHHhc-CCccHHHHHHHhcCc
Confidence 58899987666655555552333333444443 4543122222 22222333444444332332 234677777777665
Q ss_pred CC
Q 010352 98 KW 99 (512)
Q Consensus 98 ~~ 99 (512)
+.
T Consensus 114 ~~ 115 (523)
T PRK10484 114 TT 115 (523)
T ss_pred hh
Confidence 54
No 83
>PRK09395 actP acetate permease; Provisional
Probab=97.67 E-value=0.12 Score=55.05 Aligned_cols=156 Identities=9% Similarity=0.008 Sum_probs=76.2
Q ss_pred cccccchHHHHHHHHHHhhhhhhHHHHHHhhhhcCCchhHHHHHHHHHHHHHHH-HHHHHHHHhhcCCCC--hhhHHHhh
Q 010352 17 LRREMTLFKTFAISFSTMTLFTGIIPLYGSSLLYAGPASLVWGWVVVSFFTWFV-GLAMAEICSSFPTTG--SLYFWAAH 93 (512)
Q Consensus 17 l~r~l~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~G~~~~~~~~ii~~l~~~~~-a~~~~el~~~~p~~G--G~y~~~~~ 93 (512)
-.|+++++.......++..+.......++..+. .|.. .++ +.++..+..+. .+.+ +.++.+.| ..++|.++
T Consensus 67 agr~l~~~~~~~si~At~~Sa~tfiG~~g~~y~-~G~~-~~~-~~~~~~~g~~~~~~~~---~~~~r~~g~~T~~d~l~~ 140 (551)
T PRK09395 67 AGGGITGFQNGLAIAGDYMSAASFLGISALVFT-SGYD-GLI-YSIGFLVGWPIILFLI---AERLRNLGKYTFADVASY 140 (551)
T ss_pred cCCCCcHHHHHHHHHHHHHHHHHHHHhhHHHHH-hCHH-HHH-HHHHHHHHHHHHHHHH---HHHHhhCCCccHHHHHHH
Confidence 357888876555555555542333333333333 4543 222 22333332222 2223 34443332 44455544
Q ss_pred ccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccCchHHHHHHHHHHHHHHHHHHhchhh
Q 010352 94 LASPKWGPFASWCCAWLETIGLIAGMGTQAYAGSQTLQSIILLCTGTNKDGGYFAPKWLFLCMYIGLTIIWAVLNTFALE 173 (512)
Q Consensus 94 ~~g~~~g~~~g~~~g~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~k 173 (512)
=+|+ +....+.+....+.............+..++.+.+. +.+...++..++ .......-|.|
T Consensus 141 Rygs---~~~r~l~av~~iv~~~~yl~~q~~g~g~il~~~~gi------------~~~~~ili~~~i--~~iYt~~GGm~ 203 (551)
T PRK09395 141 RLKQ---GPIRTLSACGSLVVVALYLIAQMVGAGKLIQLLFGL------------NYHVAVVLVGVL--MMVYVLFGGML 203 (551)
T ss_pred HcCC---chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC------------CHHHHHHHHHHH--HHHHHhhcchH
Confidence 4332 335667777666666666667777777766665421 333333333222 23334455777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 010352 174 VIAFIDIISMWWQVAGGLVIII 195 (512)
Q Consensus 174 ~~~~~~~~~~~~~i~~~~~~~i 195 (512)
...+.+.+=.++.++..++..+
T Consensus 204 av~~TD~iQ~iim~~g~ii~~~ 225 (551)
T PRK09395 204 ATTWVQIIKAVLLLSGATFMAF 225 (551)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 7666665545555544444433
No 84
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional
Probab=97.65 E-value=0.088 Score=53.29 Aligned_cols=181 Identities=12% Similarity=0.100 Sum_probs=101.0
Q ss_pred HHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccc-c-c-ccccccccccCCCCCCCchhH
Q 010352 153 FLCMYIGLTIIWAVLNTFALEVIAFIDIISMWWQVAGGLVIIIMLPLVALTTQS-A-S-YVFTHFEMSPEATGISSKPYA 229 (512)
Q Consensus 153 ~~~i~~~~~~~~~~~~~~g~k~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~-~-~-~~~~~~~~~~~~~~~~~~~~~ 229 (512)
.....+++..+...+.++.-|...++.++++-..++.++++++.++........ + + +..+++ ..|+.. +..
T Consensus 122 ~~ifs~iFF~i~~~l~l~p~klvd~iGK~LTP~LL~~l~~lii~~i~~p~g~~~~~~~~y~~~~f-----~~Gf~e-GY~ 195 (439)
T PRK15433 122 LFIYSLVYFAIVILVSLYPGKLLDTVGNFLAPLKIIALVILSVAAIVWPAGSISTATEAYQNAAF-----SNGFVN-GYL 195 (439)
T ss_pred HHHHHHHHHHHHHHHHcChhhHHHHhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcchhhhhhhH-----HHHHHh-hHH
Confidence 345667777888899999999999999999999999999998888876322111 1 0 100111 112221 111
Q ss_pred HHHhhhhhhhhhccccccchhhhhccCcc---cccchHHHHHHHHHHHHHHHHHHHHHHhccChhhhhcCCCcccCCCcH
Q 010352 230 VILSFLVSQYSLYGYDSAAHLTEETKGAD---KTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNETAGAFVP 306 (512)
Q Consensus 230 ~~~~~~~~~~~f~G~e~~~~~~~E~k~P~---k~ip~ai~~~~~~~~i~y~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 306 (512)
-+-++....|+.. -..+--....||+| |..-++-.++.+...++|....+.-.... + ...+..+ +.
T Consensus 196 TMDalaal~Fg~i--ii~~i~~~G~~~~~~~~k~t~~ag~ia~~~L~~vY~gL~~lGa~s~-~--~~~~~~~----g~-- 264 (439)
T PRK15433 196 TMDTLGAMVFGIV--IVNAARSRGVTEARLLTRYTVWAGLMAGVGLTLLYLALFRLGSDSA-S--LVDQSAN----GA-- 264 (439)
T ss_pred HHHHHHHHHHHHH--HHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-c--cccCCCc----Hh--
Confidence 1222222222211 11122233355542 33334444555556666665555443332 1 1211111 22
Q ss_pred HHHHHHHhhcccCCcchhHHHHHHHHHHHHHhHHHHHhhhhhhHHh
Q 010352 307 AQILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYA 352 (512)
Q Consensus 307 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~ 352 (512)
+.........+|+. +..++.+....+|+++..+...+.++.+.+
T Consensus 265 -~il~~~~~~~~G~~-G~~ll~iiv~lACLTTaIGLi~a~a~~f~~ 308 (439)
T PRK15433 265 -AILHAYVQHTFGGG-GSFLLAALIFIACLVTAVGLTCACAEFFAQ 308 (439)
T ss_pred -HHHHHHHHHHhCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333333333444 788899999999999999999999887653
No 85
>PF02028 BCCT: BCCT family transporter; InterPro: IPR000060 These prokaryotic transport proteins belong to a family known as BCCT (for Betaine / Carnitine / Choline Transporters) and are specific for compounds containing a quaternary nitrogen atom. The BCCT proteins contain 12 transmembrane regions and are energized by proton symport. They contain a conserved region with four tryptophans in their central region [].; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2WSX_B 3HFX_A 2WSW_A 4DOJ_B 2WIT_C 4AIN_A 3P03_B.
Probab=97.64 E-value=0.11 Score=53.84 Aligned_cols=379 Identities=15% Similarity=0.092 Sum_probs=174.6
Q ss_pred cccccchHHHHHHHHHHhhhhhhHHHHHHhhhh---------cCCc-hh------------HHHHHHHHHHHHHHHHHHH
Q 010352 17 LRREMTLFKTFAISFSTMTLFTGIIPLYGSSLL---------YAGP-AS------------LVWGWVVVSFFTWFVGLAM 74 (512)
Q Consensus 17 l~r~l~~~~~~~~~~~~~~~~~gi~~~~~~~~~---------~~G~-~~------------~~~~~ii~~l~~~~~a~~~ 74 (512)
-|.+.+.++.++|..+.-+|..-++....+.+. ..+. .. .+.+|.+-.+..++.++.+
T Consensus 71 ~kPefS~~sW~aMlf~aGig~GivfwgvaEP~~~~~~pP~~~~p~s~~A~~~A~~~~~fHWG~~~Wa~Y~~~~l~~ay~~ 150 (485)
T PF02028_consen 71 AKPEFSTFSWFAMLFCAGIGAGIVFWGVAEPLYHYQSPPFGIEPGSPEAAEWAMAYSFFHWGFHAWAIYALVGLAIAYFF 150 (485)
T ss_dssp S--SS-HHHHHHHHHHHCSSHHHHHHHHHHHHHHHHS-STT-TTT-HHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCchHHHHHHHHHHhcchhhcchhHhhHHHhcCCCCCCCCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHheee
Confidence 356899999999999999884444444433221 1111 00 2335555566666666655
Q ss_pred HHHHhhcCCCChhhHHHhhccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccCchHHHH
Q 010352 75 AEICSSFPTTGSLYFWAAHLASPKWGPFASWCCAWLETIGLIAGMGTQAYAGSQTLQSIILLCTGTNKDGGYFAPKWLFL 154 (512)
Q Consensus 75 ~el~~~~p~~GG~y~~~~~~~g~~~g~~~g~~~g~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (512)
.. ++.|-. .-.-.+..+|++..+..|-+.=....++.+...+...-.....++..++.. .+.+++...+.
T Consensus 151 y~--k~~~~~--~ss~l~pl~g~~~~g~~g~~ID~l~i~a~~~GvatslGlg~~qi~~gl~~~------~Gi~~~~~~~~ 220 (485)
T PF02028_consen 151 YN--KGKPLR--ISSALYPLLGDRINGPLGKIIDILAIFATIFGVATSLGLGVPQISAGLSSL------FGIPNTFGLQI 220 (485)
T ss_dssp HT--S---SS--GGGGCHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------CTSSSTHHHHH
T ss_pred ee--cCCCCc--hhhhhhhhcCCcccCcchhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH------cCCCCchHHHH
Confidence 55 333321 222223333332333345555555555555544444444444444444432 35566666777
Q ss_pred HHHHHHHHHHHHHHhchhhH-HHHHHHHHHHHHHHHHHHHHHhh---hhhcccccc-----cccccccccccc-CCCC-C
Q 010352 155 CMYIGLTIIWAVLNTFALEV-IAFIDIISMWWQVAGGLVIIIML---PLVALTTQS-----ASYVFTHFEMSP-EATG-I 223 (512)
Q Consensus 155 ~i~~~~~~~~~~~~~~g~k~-~~~~~~~~~~~~i~~~~~~~i~~---~~~~~~~~~-----~~~~~~~~~~~~-~~~~-~ 223 (512)
.+.+++..+.+.-...|+|. .+++.++-..+.+..++.+.+.+ +......++ .++....+...| ...+ |
T Consensus 221 ~ii~~~~~i~~~S~~~Gl~kGIk~LS~~n~~l~~~ll~~vl~~Gpt~fil~~~~~s~G~yl~~f~~~s~~t~~~~~~~~w 300 (485)
T PF02028_consen 221 IIIIVITVIFTISAVSGLDKGIKRLSNINVYLAFALLLFVLLFGPTVFILNLFTESIGDYLQNFFRMSLWTDPFGNSGQW 300 (485)
T ss_dssp HHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHT--TTTTTTTHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcccccccCcccc
Confidence 66666666666666666644 33344333444333333332222 111100000 111111110000 1122 3
Q ss_pred CCchhHHHHhhhhhhhhhccccccchhhhhccCcccccchHHHHHHHHHHHHHHHHHHHHHHhccChhhhhcCCCccc-C
Q 010352 224 SSKPYAVILSFLVSQYSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNETA-G 302 (512)
Q Consensus 224 ~~~~~~~~~~~~~~~~~f~G~e~~~~~~~E~k~P~k~ip~ai~~~~~~~~i~y~~~~~~~~~~~~~~~~l~~~~~~~~-~ 302 (512)
++ -..-+..+-|.=.+.-....+++=.|. |+++.-+. +..+.-.+....-.++.+...=..+..+..+-.+ .
T Consensus 301 ~~----~WTvFYwaWWiawaPfvG~FiArISkG--RTIRE~il-~~~~~psl~~~~wf~ifGg~al~~~~~g~~~~~~~~ 373 (485)
T PF02028_consen 301 PQ----DWTVFYWAWWIAWAPFVGLFIARISKG--RTIREFIL-GVLLVPSLFCFLWFSIFGGYALYLQLSGAGDLAAAN 373 (485)
T ss_dssp HH----HTHHHHHHHHHHTHHHHHHHHHHCTTT--SBHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHCTSS-HHHHH
T ss_pred cC----CCHHHHHHHHHHHHHHHHHHHhhhcCC--cCHHHHHH-HHHHhhHHHHHHHHHHHCchHHhhHhhhhhhHHHHh
Confidence 32 333344333333333333444554554 77744444 4444333333333333222201111111000000 0
Q ss_pred CCcHHHHHHHHhhcccCCcchhHHHHHHHHHHHHHhHHHHHhhhhhhHHhhhcCC-CCCcccccccccccCCchHHHHHH
Q 010352 303 AFVPAQILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDK-GIPFSSIWRQLHPKHKVPSNAVWL 381 (512)
Q Consensus 303 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~ma~d~-~lP~~~~f~~~~~~~~~P~~a~~~ 381 (512)
.+...+.....++.. | +..++....++..+....+..-+.+..+-.++.+| .=| + |...=.+++++
T Consensus 374 ~~g~~~a~~~~l~~l---P-~~~i~~~~~lil~~~f~vTs~DS~~~~la~~s~~~~~ep--~-------~~~ri~W~~~~ 440 (485)
T PF02028_consen 374 EQGPEAALFAFLEQL---P-LSKILSILFLILIFIFFVTSADSATYVLAMLSSKGDEEP--P-------RWLRIFWGLII 440 (485)
T ss_dssp HH-HHHHHHHHHHTS---T-THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSSS----------HHHHHHHHHHH
T ss_pred hcchhhHHHHHHHHh---h-HHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHcCCCCCC--c-------hHHHHHHHHHH
Confidence 001113333444322 3 55666677777777777788888888888888876 223 1 21122233332
Q ss_pred HHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 010352 382 CAAICIILGLPILKVNVVFTAITSICTIGWVGGYAVPIFARMVMAEQ 428 (512)
Q Consensus 382 ~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~r~~ 428 (512)
.. ++.. ++..+..+..+.+..+.++...+...+.+.+.+|.-||
T Consensus 441 ~~-~a~~--ll~~ggl~~lq~~~ii~~lP~~~v~~~~~~~~~k~l~~ 484 (485)
T PF02028_consen 441 GA-LAIV--LLLIGGLDALQSASIIGGLPFSFVMLLMCISFIKALKE 484 (485)
T ss_dssp HH-HHHH--HHHHHSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HH-HHHH--HHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 22 2222 22234467888888888888888888888888776443
No 86
>COG1914 MntH Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism]
Probab=97.56 E-value=0.12 Score=52.22 Aligned_cols=28 Identities=7% Similarity=0.090 Sum_probs=18.3
Q ss_pred hhHHHHHHHHHHHHHhHHHHHhhhhhhH
Q 010352 323 GAIILLIVIWGSFFFGGLSVTTSAARVV 350 (512)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~sR~l 350 (512)
...+..+..+.+..++....-++...++
T Consensus 286 ~~~lF~v~llasg~~s~~~~~~a~~~~~ 313 (416)
T COG1914 286 AFVLFGVALLAAGLSSTVVATYAGQIVM 313 (416)
T ss_pred HHHHHHHHHHHhHHHHHHHHhhhhHHHH
Confidence 5666667777777777766666555543
No 87
>PRK09950 putative transporter; Provisional
Probab=97.45 E-value=0.19 Score=52.06 Aligned_cols=97 Identities=9% Similarity=-0.015 Sum_probs=58.1
Q ss_pred hhHHHHHHHHHHHHHhHHHHHhhhhhhHHhhhcCCCCCcccccccccc-cCCchHHHHHHHHHHHHHHhccccccHHHHH
Q 010352 323 GAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQLHP-KHKVPSNAVWLCAAICIILGLPILKVNVVFT 401 (512)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~ma~d~~lP~~~~f~~~~~-~~~~P~~a~~~~~~i~~~~~~~~~~~~~~~~ 401 (512)
...++....++.++.-..+..-+.+-++-.++.+|.-+ + .+| |.+.=.+++.+.. ++..+.+. .++.+..+
T Consensus 400 ~~~i~~~l~~vl~~if~vTs~DS~s~vla~~ts~g~~~--~----~~P~~~~ri~W~i~~g~-ia~~Ll~~-gG~l~~lQ 471 (506)
T PRK09950 400 AGKLFLAAYLGIMIIFLASHMDAVAYTMAATSTRNLRE--G----DDPDRGLRLFWCVVITL-IPLSILFT-GASLDTMK 471 (506)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHcCCCCC--C----CCCCcchhHHHHHHHHH-HHHHHHHh-CCcHHHHH
Confidence 55666666666677777777778888888887766533 1 122 2233344444333 33333221 12366777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcc
Q 010352 402 AITSICTIGWVGGYAVPIFARMVMAE 427 (512)
Q Consensus 402 ~l~~~~~~~~~~~~~l~~~~~~~~r~ 427 (512)
....+.++...+...+.+.+.++.-|
T Consensus 472 ~~~ii~alP~~~i~~l~~~s~~k~l~ 497 (506)
T PRK09950 472 TTVVLTALPFLVILLIKVYGFIRWLK 497 (506)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 77778888888877777777765543
No 88
>PF02133 Transp_cyt_pur: Permease for cytosine/purines, uracil, thiamine, allantoin; InterPro: IPR001248 The Nucleobase Cation Symporter-1 (NCS1) family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.; GO: 0015205 nucleobase transmembrane transporter activity, 0015851 nucleobase transport, 0016020 membrane; PDB: 2JLN_A 2JLO_A.
Probab=97.44 E-value=0.12 Score=53.32 Aligned_cols=242 Identities=11% Similarity=0.029 Sum_probs=109.6
Q ss_pred cccccchHHHHHHHHHHhhhhhhHHHHHHhhhhc-CCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC-hhhHHHhhc
Q 010352 17 LRREMTLFKTFAISFSTMTLFTGIIPLYGSSLLY-AGPASLVWGWVVVSFFTWFVGLAMAEICSSFPTTG-SLYFWAAHL 94 (512)
Q Consensus 17 l~r~l~~~~~~~~~~~~~~~~~gi~~~~~~~~~~-~G~~~~~~~~ii~~l~~~~~a~~~~el~~~~p~~G-G~y~~~~~~ 94 (512)
.+|+-++++.+.+=.+....... +......... -+...++++.+++.++........+.++ |+.| ......|..
T Consensus 5 ~~R~~~~~~~~~iW~~~~~~~~~-~~~G~~~~~~gL~~~~ailai~~G~~l~~i~~~~~~~~G---~r~Gl~~~v~sR~~ 80 (440)
T PF02133_consen 5 SERTWSPWSLFWIWFGANISIAT-FVTGALGVALGLSFWQAILAILIGNLLGAILVALMGIIG---PRTGLPTMVLSRAS 80 (440)
T ss_dssp GG--B-HHHHHHHHCHHH-SCHH-H-HHHHHHCCCS-HHHHHHHHHHHHHHHHHHHHHHTHHH---HCC---HHHHTTTT
T ss_pred hcCCCcHHHHHHHHHHHHHHHHH-HHHHHHHHccCchHHHHHHHHHHHHHHHHHHHHHhcccc---cccCCCchhcchhc
Confidence 45777888888775555543222 2222222222 1223355565555554433333334444 4555 355556666
Q ss_pred cCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-CC-CccCchHHHHHHHHHHHHHHHHHHhchh
Q 010352 95 ASPKWGPFASWCCAWLETIGLIAGMGTQAYAGSQTLQSIILLCTGTNK-DG-GYFAPKWLFLCMYIGLTIIWAVLNTFAL 172 (512)
Q Consensus 95 ~g~~~g~~~g~~~g~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~i~~~~~~~~~~~~~~g~ 172 (512)
+|.+.+.+......+..+...+......++.+..+.+...+... .+ ..........+..++.-++.....+.|.
T Consensus 81 ----FG~~Gs~l~~~l~~i~~igW~av~~~~~g~al~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~ 156 (440)
T PF02133_consen 81 ----FGYRGSKLPSLLRAISAIGWFAVNTWLGGQALAALLGIIFGSFLWIGNAIIGIALPLWVCFFIFWLIQTLFAIYGM 156 (440)
T ss_dssp ----S-TTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-----HH-----------HHHHHHHHHHHHHHCTHH
T ss_pred ----cCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCcchhhhhhhhcchhhHHHHHHHHHHHHHHHHhcCH
Confidence 45545667777777777778888888888888887753110000 00 0000111112222233344556678888
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccccccccccccCCCCCCCchhHHHHhhhhhhhhh-ccccccchhh
Q 010352 173 EVIAFIDIISMWWQVAGGLVIIIMLPLVALTTQSASYVFTHFEMSPEATGISSKPYAVILSFLVSQYSL-YGYDSAAHLT 251 (512)
Q Consensus 173 k~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f-~G~e~~~~~~ 251 (512)
|...+++.+...+.....+............ +...+.- . +..... .+..++....-.+ ...-..+.++
T Consensus 157 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~-~--~~~~~~----~~~~~i~~~~~~~~~~~~~~~Dys 225 (440)
T PF02133_consen 157 KALRRLAVIAAPILLVVFIGMLIWALSKAGG----GPLLSAP-A--SPSPSG----SFLAAIALVIGSWISWAPNASDYS 225 (440)
T ss_dssp HHHHHHHHCCHHHHHHHHHHHHHHHHHHCT-----HHHCCS-----S----S-----HHHHHHHHHCCCHHHHCCCHHHH
T ss_pred HHHHhHHhhhhHHHHhhhhheeEEEeecCCc----chhhhCc-c--cchhHH----HHHHHHHHHHhhhhhhhhccccHH
Confidence 8888888766665544444443333332211 1111110 0 111111 2444433322222 2334456888
Q ss_pred hhccCcccccchHHHHHHHHHHHHHHH
Q 010352 252 EETKGADKTGPIAILSSIGIISIFGWA 278 (512)
Q Consensus 252 ~E~k~P~k~ip~ai~~~~~~~~i~y~~ 278 (512)
...|++++ -.+...++.....+...+
T Consensus 226 Ry~~~~~~-~~~~~~~~~~~~~~~~~~ 251 (440)
T PF02133_consen 226 RYAKSDTS-AWWGFWLGFPGGFIPFVL 251 (440)
T ss_dssp TTC--HHH-HHHHHHHHHHHHHHHHHH
T ss_pred hhCCCCCC-cEEEEeehhhhHHHHHHH
Confidence 88888544 445555555554444443
No 89
>COG4145 PanF Na+/panthothenate symporter [Coenzyme metabolism]
Probab=97.04 E-value=0.36 Score=46.99 Aligned_cols=217 Identities=15% Similarity=0.115 Sum_probs=107.8
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccCchHHHHHHHHHHHHHHHHHHhchhh---HH
Q 010352 99 WGPFASWCCAWLETIGLIAGMGTQAYAGSQTLQSIILLCTGTNKDGGYFAPKWLFLCMYIGLTIIWAVLNTFALE---VI 175 (512)
Q Consensus 99 ~g~~~g~~~g~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~k---~~ 175 (512)
-+++.-++.+....+.....+.+..++.++.++...+. +|.. ..++....+.+-+ .+-|-| ..
T Consensus 117 ~s~fl~~las~~Lifff~~~m~~qfiGgarLlE~~~gi--------dY~t----gL~ifa~~V~iYt--~fGGFRAvvlt 182 (473)
T COG4145 117 QSRFLVWLASLSLIFFFVGAMTVQFIGGARLLETALGI--------DYTT----GLLIFAVSVAIYT--AFGGFRAVVLT 182 (473)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHCC--------Cchh----hHHHHHHHHHHHH--hhcceeeeehH
Confidence 47778889999999988899999999999988887643 3322 2222222222222 233444 44
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhccccccccccccccc---cccCCCCCCCchhHHHHhhhhhhhhhc-----ccccc
Q 010352 176 AFIDIISMWWQVAGGLVIIIMLPLVALTTQSASYVFTHFE---MSPEATGISSKPYAVILSFLVSQYSLY-----GYDSA 247 (512)
Q Consensus 176 ~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~f~-----G~e~~ 247 (512)
..+| ..++++..+++.+..+...++-++.-...++.+ ..|+..+- .+-..+...+|... |.-..
T Consensus 183 D~IQ---G~vmligtv~Lf~~~i~~~GG~~~av~tl~~iDp~lv~P~~~~~-----~l~~~Fm~Sfwilv~~gvlglP~t 254 (473)
T COG4145 183 DTIQ---GLVMLIGTVVLFVGVIYAGGGLSNAVETLTTIDPGLVTPQGADD-----ILDPPFMASFWILVCFGVLGLPHT 254 (473)
T ss_pred HHHH---HHHHHHHHHHHHHHHHHhccCHHHHHHHHHhCCccccCCCCCcc-----cccchHHHHHHHHHHHHHhcCcHH
Confidence 5556 444444444444444433322211111122221 11111111 12223333334433 33333
Q ss_pred chhhhhccCcccccchHHHHHHHHHHHHHHHHHHHHHHhccChhhhhcCCCcccCCCcHHHHHHHHhhcccCCcchhHHH
Q 010352 248 AHLTEETKGADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNETAGAFVPAQILYDAFHGRYHNSTGAIIL 327 (512)
Q Consensus 248 ~~~~~E~k~P~k~ip~ai~~~~~~~~i~y~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 327 (512)
..-.-..|| +|.+.+++.++.+++.++-+.+-.+-.....-.+++...+ .-+.....+.+.+. ..-+.
T Consensus 255 ~vr~ia~kD-skaih~gmiigt~vi~il~~gmhl~G~~graViPdlt~~D------~Vip~lalkvlpp~-----~agif 322 (473)
T COG4145 255 AVRCIAFKD-SKAIHRGMIIGTIVIAILMLGMHLAGALGRAVIPDLTVVD------LVIPTLALKVLPPF-----AAGIF 322 (473)
T ss_pred HHHHHhccc-hhHHhcCcchHHHHHHHHHHHHHHhhhhhhhhcCCCCccc------hhHHHHHHHhcchH-----HHHHH
Confidence 333344588 6889999999999988887665444332221112222221 12223333333221 33344
Q ss_pred HHHHHHHHHHhHHHHHhhhhhh
Q 010352 328 LIVIWGSFFFGGLSVTTSAARV 349 (512)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~sR~ 349 (512)
..+.+.+..++.++.+.-.|-.
T Consensus 323 l~apmaAiMSTIds~L~~~sst 344 (473)
T COG4145 323 LAAPMAAIMSTINSQLLQSSST 344 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666777777766655543
No 90
>PRK09928 choline transport protein BetT; Provisional
Probab=97.02 E-value=0.66 Score=49.62 Aligned_cols=381 Identities=10% Similarity=-0.036 Sum_probs=166.6
Q ss_pred ccccchHHHHHHHHHHhhhhhhHHHHHHhhh--------hcCCchh-H-------HHHH-HHHHHHHHHHHHHHHHHHhh
Q 010352 18 RREMTLFKTFAISFSTMTLFTGIIPLYGSSL--------LYAGPAS-L-------VWGW-VVVSFFTWFVGLAMAEICSS 80 (512)
Q Consensus 18 ~r~l~~~~~~~~~~~~~~~~~gi~~~~~~~~--------~~~G~~~-~-------~~~~-ii~~l~~~~~a~~~~el~~~ 80 (512)
|.+++.++.++|-++.-+|..-++....+.+ ..++... + .+=| +-++.++...++.++..+-+
T Consensus 90 kPefS~~sW~aMLFaAGmGigLmfwgvaEP~~h~~~PP~g~~~s~eAa~~Am~~t~FHWG~~aWAiYalvglalAYf~yr 169 (679)
T PRK09928 90 KPEFSLLSWAAMLFAAGIGIDLMFFSVAEPVTQYMQPPEGAGQTIEAARQAMVWTLFHYGLTGWSMYALMGMALGYFSYR 169 (679)
T ss_pred CCCCCcchHHHHHHHHhhhhhheeehHHhHHHHhCCCCCCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhc
Confidence 4678889999998888887333344333322 1112110 1 1111 12334444444544444433
Q ss_pred cCCCChhhHHHhhccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccCchHHHHHHHHHH
Q 010352 81 FPTTGSLYFWAAHLASPKWGPFASWCCAWLETIGLIAGMGTQAYAGSQTLQSIILLCTGTNKDGGYFAPKWLFLCMYIGL 160 (512)
Q Consensus 81 ~p~~GG~y~~~~~~~g~~~g~~~g~~~g~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 160 (512)
....-..-.-.+-.+|++.....|-++=....++.+...+...-.....++..+... .+.+.+...+..+.+++
T Consensus 170 ~~~pl~issal~pllG~ri~G~~G~~IDi~av~~tvfGiaTSLGlGv~qi~~GL~~l------fGi~~~~~~q~~ii~vi 243 (679)
T PRK09928 170 YNLPLTIRSALYPIFGKRINGPIGHSVDIAAVIGTIFGIATTLGIGVVQLNYGLSVL------FDIPESLAAQAALIALS 243 (679)
T ss_pred CCCCCchhHhhhhhcCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------cCCCCccHHHHHHHHHH
Confidence 333333444445556655433345455555555555555544444444444444332 13344444444433344
Q ss_pred HHHHHHHHhc----hhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcc-----ccccccc---cccccccccCC-CCCCCch
Q 010352 161 TIIWAVLNTF----ALEVIAFIDIISMWWQVAGGLVIIIMLPLVAL-----TTQSASY---VFTHFEMSPEA-TGISSKP 227 (512)
Q Consensus 161 ~~~~~~~~~~----g~k~~~~~~~~~~~~~i~~~~~~~i~~~~~~~-----~~~~~~~---~~~~~~~~~~~-~~~~~~~ 227 (512)
.++.+.-... |+|..+.++..+.+..++.++++.=..+.... ..--.++ .+..... +. .+|..
T Consensus 244 ~~i~~~S~~sGl~KGIk~LS~lN~~La~~LllfVli~GPT~fil~~~~~siG~yl~~f~~msf~t~~~--~~~~~W~~-- 319 (679)
T PRK09928 244 VIIATISVTSGVNKGIRVLSELNVLLALGLILFVLFMGDTSFLLNALVLNVGDYVNRFMGMTLNSFAF--DRPTEWMN-- 319 (679)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHheeeeccCHHHHHHHHHHHHHHHHHHHHHHhccCCCC--CCCCCccc--
Confidence 4444444444 55555556655444433333332111111110 0000111 1111100 11 24544
Q ss_pred hHHHHhhhhhhhhhccccccchhhhhccCcccccchHHHHHHHHHHHHHHHHHHHHHHhccChhhhhcCCC-c-ccCCCc
Q 010352 228 YAVILSFLVSQYSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSN-E-TAGAFV 305 (512)
Q Consensus 228 ~~~~~~~~~~~~~f~G~e~~~~~~~E~k~P~k~ip~ai~~~~~~~~i~y~~~~~~~~~~~~~~~~l~~~~~-~-~~~~~~ 305 (512)
-..-+..+-|.=...=..-.++.=.|. |++ |=.+++++++-.++...-.++.+.. ......+... - +...+.
T Consensus 320 --~WTiFYWAWWiaWaPFVGlFIARISRG--RTI-REfilgvllvPsl~~~~WfsIfGgs-al~l~~~g~~~l~~~~~~~ 393 (679)
T PRK09928 320 --NWTLFFWAWWVAWSPFVGLFLARISRG--RTI-RQFVLGTLIIPFTFTLLWLSIFGNS-ALYEIIHGNAAFAEEAMAH 393 (679)
T ss_pred --ccHHHHHHHHHHHHHHHHHHHhhhcCC--ccH-HHHHHHHHHHHHHHHHHHHHHHhhH-HHHHHHcCCccHHHHhhcc
Confidence 222222222222222222334444444 777 4445555444444433333333222 1110001000 0 000000
Q ss_pred HHHHHHHHhhcccCCcchhHHHHHHHHHHHHHhHHHHHhhhhhhHHhhhcCCCCCcccccccccccCCchHHHHHHHHHH
Q 010352 306 PAQILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQLHPKHKVPSNAVWLCAAI 385 (512)
Q Consensus 306 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~ma~d~~lP~~~~f~~~~~~~~~P~~a~~~~~~i 385 (512)
....+...++.. | +..++....++..+.-..+..-+.+-++-.++.+|.-| + .-.|+...=.|++++..+-
T Consensus 394 ~~~alf~~l~~l---P-~~~i~~~l~~il~~iFfvTSaDS~s~Vla~lts~g~~~--~---~~pp~~~RifW~v~ig~la 464 (679)
T PRK09928 394 PERGFYSLLAQY---P-AFTFSASVATITGLLFYVTSADSGALVLGNFTSKLKDI--N---SDAPNWLRVFWSVAIGLLT 464 (679)
T ss_pred hhhHHHHHHHhC---c-HHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHcCCCCC--C---CCCCcceeeHHHHHHHHHH
Confidence 112233333322 2 45555555555556666667777777887777766533 1 1112333344555544333
Q ss_pred HHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 010352 386 CIILGLPILKVNVVFTAITSICTIGWVGGYAVPIFARMVMA 426 (512)
Q Consensus 386 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~r 426 (512)
. .+++ .+..+..+...-+.++...+...+.+.+.++.-
T Consensus 465 ~-~LL~--~GGL~aLQt~sii~alPf~~I~ll~~~sl~k~l 502 (679)
T PRK09928 465 L-GMLM--TNGISALQNTTVIMGLPFSFVIFFVMAGLYKSL 502 (679)
T ss_pred H-HHHH--hcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 3222 334667777777888888887777777776653
No 91
>TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX. On the basis of a phylogenomic study of thiamine biosythetic, salvage, and transporter genes and a highly conserved RNA element THI, this protein family has been identified as a probable transporter of hydroxymethylpyrimidine (HMP), the phosphorylated (by ThiD) form of which gets joined (by ThiE) to hydroxyethylthiazole phosphate to make thiamine phosphate.
Probab=96.98 E-value=0.51 Score=47.76 Aligned_cols=200 Identities=12% Similarity=0.003 Sum_probs=110.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCCChhhHHHhhccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010352 56 LVWGWVVVSFFTWFVGLAMAEICSSFPTTGSLYFWAAHLASPKWGPFASWCCAWLETIGLIAGMGTQAYAGSQTLQSIIL 135 (512)
Q Consensus 56 ~~~~~ii~~l~~~~~a~~~~el~~~~p~~GG~y~~~~~~~g~~~g~~~g~~~g~~~~~~~~~~~a~~~~~~~~~~~~~~~ 135 (512)
++++.+++-++.....-..+..+.++.. ......|..+|++ -+.+......+..+...+......++.++.+.+
T Consensus 31 ai~aiilG~~i~~~~~~l~~~~G~~~Gl--~~~v~sR~~FG~~----Gs~~~~~l~~i~~igW~~v~~~~gg~~l~~~~~ 104 (386)
T TIGR02358 31 GLLAILLGHLVGVLLLSAAGVIGADTGL--SAMGSLKLSLGSK----GSVLPSLLNLLQLVGWTAVMIIVGAKAASLLGG 104 (386)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccCc--CHHHHHHHHHccc----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666655544444444444444422 4666777775544 456777777777778888888888888888775
Q ss_pred HhcCCCCCCCccCchHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccccccccc
Q 010352 136 LCTGTNKDGGYFAPKWLFLCMYIGLTIIWAVLNTFALEVIAFIDIISMWWQVAGGLVIIIMLPLVALTTQSASYVFTHFE 215 (512)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~k~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 215 (512)
... +. .++.... ..+.++.......|.|...+++++...+..+..+......+.+.+ .. +..
T Consensus 105 ~~~------~~-~~~~~~~---~i~~~l~~~~~~~G~~~i~~~~~~~~~~~~i~~~~~~~~~~~~~~--~~-----~~~- 166 (386)
T TIGR02358 105 RLF------GE-ESPMLWI---LIVGILVTLWLLSGPLAFVWLNNWSVWLLLIATLWLLVVVFSKAD--LS-----ELW- 166 (386)
T ss_pred Hhc------CC-CchHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--hh-----hhc-
Confidence 421 11 1122111 122234566667899999999988877766665555544433321 11 011
Q ss_pred cccCCCCCCCchhHHHHhhhhhhhhh-ccccccchhhhhccCcccccchHHHHHHHHHHHHHHHHHHHHHHhc
Q 010352 216 MSPEATGISSKPYAVILSFLVSQYSL-YGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALILALCFSI 287 (512)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~f-~G~e~~~~~~~E~k~P~k~ip~ai~~~~~~~~i~y~~~~~~~~~~~ 287 (512)
. .+.+ . ++..+.....-.. .+....+.++...|+|+ +.-++..++..+...+..+.........
T Consensus 167 ~--~~~~-~----s~~~~~~~~~~~~~swa~~~~DysRy~k~~~-~~~~~~~~G~~i~~~~~~~~G~~~~~a~ 231 (386)
T TIGR02358 167 N--RAGD-M----SFAVAVELVIAMPLSWLPLIADYTRFARNPR-HVFLGTVLGYFIGSCWMYFLGLAVTLAT 231 (386)
T ss_pred C--CCCC-c----cHHHHHHHHHHHHHHHHHHccchhhhcCCCc-ceehHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 1 1111 1 1333322221111 12223688888888864 4667777777776666655555444433
No 92
>PRK03356 L-carnitine/gamma-butyrobetaine antiporter; Provisional
Probab=96.91 E-value=0.67 Score=48.11 Aligned_cols=98 Identities=7% Similarity=-0.109 Sum_probs=58.5
Q ss_pred hhHHHHHHHHHHHHHhHHHHHhhhhhhHHhhhcCCCCCcccccccccccCCchHHHHHHHHHHHHHHhccccccHHHHHH
Q 010352 323 GAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQLHPKHKVPSNAVWLCAAICIILGLPILKVNVVFTA 402 (512)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~ma~d~~lP~~~~f~~~~~~~~~P~~a~~~~~~i~~~~~~~~~~~~~~~~~ 402 (512)
+..++....++..+....+..-+++-++-.++.+|.-+ +. + .||...=.+++.+..+ +..+.+ .+..+..+.
T Consensus 403 l~~i~~~l~~il~~if~vTsaDS~t~vla~~ts~g~~~--~~--~-p~~~~ri~W~v~ig~i-a~~Ll~--~GGl~~lQt 474 (504)
T PRK03356 403 LSTATMWGFFILCFIATVTLINACSYTLAMSTCREVRD--GE--E-PPLLVRIGWSILVGII-GIVLLA--LGGLKPIQT 474 (504)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHcCCCCC--CC--C-CCcchhhHHHHHHHHH-HHHHHH--hcCHHHHHH
Confidence 45555556666666667777777888888888876532 11 1 1132333444443333 333322 334667777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccc
Q 010352 403 ITSICTIGWVGGYAVPIFARMVMAEQ 428 (512)
Q Consensus 403 l~~~~~~~~~~~~~l~~~~~~~~r~~ 428 (512)
...+.++...+...+.+.+.++.-|+
T Consensus 475 ~sii~alPf~~i~~l~~~sl~k~l~~ 500 (504)
T PRK03356 475 AIIAGGCPLFFVNIMVTLSFIKDAKQ 500 (504)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 87888888888777777777765443
No 93
>PF02705 K_trans: K+ potassium transporter; InterPro: IPR003855 This is a family of K+ potassium transporters that are conserved across phyla, having both bacterial (KUP) [], yeast (HAK) [], and plant (AtKT) [] sequences as members.; GO: 0015079 potassium ion transmembrane transporter activity, 0071805 potassium ion transmembrane transport, 0016020 membrane
Probab=96.50 E-value=0.44 Score=49.44 Aligned_cols=204 Identities=9% Similarity=-0.040 Sum_probs=99.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccCchHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHH
Q 010352 115 LIAGMGTQAYAGSQTLQSIILLCTGTNKDGGYFAPKWLFLCMYIGLTIIWAVLNTFALEVIAFIDIISMWWQVAGGLVII 194 (512)
Q Consensus 115 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~k~~~~~~~~~~~~~i~~~~~~~ 194 (512)
.++++|.+.....+-+.... ++.. .....+++++++.+..+--+|....++.-.-.+.+=.+.+..+.
T Consensus 106 gviTPAISVlSAvEGl~v~~---------p~~~---~~Vv~it~~ILv~LF~iQ~~GT~~ig~~FgPim~~WF~~l~~~G 173 (534)
T PF02705_consen 106 GVITPAISVLSAVEGLEVAT---------PSLE---PYVVPITIAILVGLFAIQRFGTAKIGKLFGPIMLLWFLTLGVLG 173 (534)
T ss_pred eeecchHHHHHHhhhhhccC---------CCCc---ceehhHHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHHHHHH
Confidence 45666666666666665322 1221 23466777888888888888977777765444444444444444
Q ss_pred Hhhhhhcccc---ccccccccccccccCCCCCCCchhHHHHhhhhhhhhhccccccc-hhhhhccCcccccchHHHHHHH
Q 010352 195 IMLPLVALTT---QSASYVFTHFEMSPEATGISSKPYAVILSFLVSQYSLYGYDSAA-HLTEETKGADKTGPIAILSSIG 270 (512)
Q Consensus 195 i~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~-~~~~E~k~P~k~ip~ai~~~~~ 270 (512)
+.-+...+.- -++.+..+=+ ...++.+ +..+...+.+.+|-|+-- .++.= .+|++.++...-+.
T Consensus 174 ~~~I~~~p~Vl~A~nP~yai~f~----~~~~~~~-----~~~LG~V~L~~TGaEALyADmGHf---g~~~Ir~aw~~~V~ 241 (534)
T PF02705_consen 174 LYNIIQHPEVLKALNPYYAIRFF----IRNGWIG-----FFVLGAVFLCVTGAEALYADMGHF---GRKPIRIAWFFLVF 241 (534)
T ss_pred HHHHhhCHHHHHHhCHHHHHHHH----HHcCCch-----hhhcchHHHHHhhHHHHHhhhccc---cchhhhhhHHHHHH
Confidence 4444332110 0111111111 1111221 223445567899999863 33322 24445555444222
Q ss_pred -HHHHHHHHHHHHHHHhccChhhhhcCCCcccCCCcHHHHHHHHhhcccCCcchhHHHHHHHHHHHHHhHHHHHhhhhhh
Q 010352 271 -IISIFGWALILALCFSIQDFSYLYDKSNETAGAFVPAQILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARV 349 (512)
Q Consensus 271 -~~~i~y~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~ 349 (512)
...+-|+. +-.-+.++++ ...++|...... +..+-+.+...++..-+.-+.+.++--+
T Consensus 242 PaL~LnY~G----------QgA~ll~~p~------~~~npFf~~~P~-----~~~~p~~ilAtlAtIIASQA~Isg~FSl 300 (534)
T PF02705_consen 242 PALLLNYFG----------QGALLLSHPE------AVSNPFFLLIPE-----WLLWPMVILATLATIIASQAVISGAFSL 300 (534)
T ss_pred HHHHHHHcc----------HHHHHHcCcc------hhhhHHHHHhHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222322 1122222221 123556665433 2445444555555555555556666666
Q ss_pred HHhhhcCCCCCccc
Q 010352 350 VYALSRDKGIPFSS 363 (512)
Q Consensus 350 l~~ma~d~~lP~~~ 363 (512)
..+.-+-|.+|.-+
T Consensus 301 ~~Qai~Lg~~Pr~~ 314 (534)
T PF02705_consen 301 TRQAIQLGYFPRLK 314 (534)
T ss_pred HHHHHHhCCCCceE
Confidence 67777889999433
No 94
>PF00209 SNF: Sodium:neurotransmitter symporter family; InterPro: IPR000175 Neurotransmitter transport systems are integral to the release, re-uptake and recycling of neurotransmitters at synapses. High affinity transport proteins found in the plasma membrane of presynaptic nerve terminals and glial cells are responsible for the removal from the extracellular space of released-transmitters, thereby terminating their actions []. Plasma membrane neurotransmitter transporters fall into two structurally and mechanistically distinct families. The majority of the transporters constitute an extensive family of homologous proteins that derive energy from the co-transport of Na+ and Cl-, in order to transport neurotransmitter molecules into the cell against their concentration gradient. The family has a common structure of 12 presumed transmembrane helices and includes carriers for gamma-aminobutyric acid (GABA), noradrenaline/adrenaline, dopamine, serotonin, proline, glycine, choline, betaine and taurine. They are structurally distinct from the second more-restricted family of plasma membrane transporters, which are responsible for excitatory amino acid transport. The latter couple glutamate and aspartate uptake to the cotransport of Na+ and the counter-transport of K+, with no apparent dependence on Cl- []. In addition, both of these transporter families are distinct from the vesicular neurotransmitter transporters [, ]. Sequence analysis of the Na+/Cl- neurotransmitter superfamily reveals that it can be divided into four subfamilies, these being transporters for monoamines, the amino acids proline and glycine, GABA, and a group of orphan transporters [].; GO: 0005328 neurotransmitter:sodium symporter activity, 0006836 neurotransmitter transport, 0016021 integral to membrane; PDB: 2QEI_A 3F3C_A 3USP_A 3USK_A 3TU0_A 3GWW_A 3TT3_A 3F4J_A 3USJ_B 3GJC_B ....
Probab=96.22 E-value=0.78 Score=48.53 Aligned_cols=110 Identities=11% Similarity=0.006 Sum_probs=59.6
Q ss_pred HHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccccccccccccCCCCCCCchhHHHHhhhhhhhhh-c
Q 010352 164 WAVLNTFALEVIAFIDIISMWWQVAGGLVIIIMLPLVALTTQSASYVFTHFEMSPEATGISSKPYAVILSFLVSQYSL-Y 242 (512)
Q Consensus 164 ~~~~~~~g~k~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f-~ 242 (512)
......+|+|..+|+......+..+.++++.+-++...+.... .+.+ ..|+.....+ ..-+..++..++|+. .
T Consensus 191 v~~~i~kGi~~~~kv~~~~~~~p~v~l~il~ir~ltl~ga~~G----l~~~-~~pd~~~l~~-~~vW~~A~~Q~ffsl~i 264 (523)
T PF00209_consen 191 VFFGIWKGIESIGKVMYPTLLLPFVLLIILLIRSLTLPGASEG----LKFL-FTPDWSKLLD-PKVWIAALGQVFFSLSI 264 (523)
T ss_dssp HTTTTTTTHHHHHHHHHHHHH---HHHHHHHHHHHT-EEHHHH----HHHH-HSB-TTGTTS-HHHHHHHHHHHHHHTTT
T ss_pred HHHheEeccccccchhhhhhhhhhEEEEEEEEEEEcCCCCCCc----eEEE-ecCCcchhhH-HHHHHHHHHHHhhccCC
Confidence 4444568899988887666554444444444433333211111 1111 1123232332 344677888888888 6
Q ss_pred cccccchhhhhccCcccccchHHHHHHHHHHHHHHHHH
Q 010352 243 GYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALI 280 (512)
Q Consensus 243 G~e~~~~~~~E~k~P~k~ip~ai~~~~~~~~i~y~~~~ 280 (512)
|+-....++.-.|+ ++|++|.............++..
T Consensus 265 g~G~~it~~Sy~~~-~~n~~~~a~~v~~~~~~~sllag 301 (523)
T PF00209_consen 265 GFGIMITYGSYNKF-KNNIFRDALIVAFINTLVSLLAG 301 (523)
T ss_dssp TSSHHHHHHTTS-T-TS-SHHHHHHHHHHHHHHHHTTG
T ss_pred CcceEEEEcCcCCC-CccccccceEEEcCchhhhHhHH
Confidence 88888888888877 67788877666666555554433
No 95
>COG4147 DhlC Predicted symporter [General function prediction only]
Probab=96.18 E-value=1.7 Score=43.99 Aligned_cols=189 Identities=14% Similarity=0.106 Sum_probs=100.6
Q ss_pred HHHHHHHHHHHhhcCCCChhhHHHhhccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcc
Q 010352 68 WFVGLAMAEICSSFPTTGSLYFWAAHLASPKWGPFASWCCAWLETIGLIAGMGTQAYAGSQTLQSIILLCTGTNKDGGYF 147 (512)
Q Consensus 68 ~~~a~~~~el~~~~p~~GG~y~~~~~~~g~~~g~~~g~~~g~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (512)
....++.+|--|++-+.-=......|.-.++ .-++++....+....+........+..+..+++.
T Consensus 88 ~i~~fL~A~~LRk~GkyT~aD~~a~Ry~~~~----~R~~aa~~ti~vs~~YliaQmvGaG~li~~l~gv----------- 152 (529)
T COG4147 88 PILLFLIAEYLRKLGKYTFADFIADRYKSNP----ARLLAAIGTIIVSFLYLIAQMVGAGLLISLLLGV----------- 152 (529)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHhcch----hhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCC-----------
Confidence 3455677888887744322233344443333 3556666666666777777777777777777643
Q ss_pred CchHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccccccccc------ccCCC
Q 010352 148 APKWLFLCMYIGLTIIWAVLNTFALEVIAFIDIISMWWQVAGGLVIIIMLPLVALTTQSASYVFTHFEM------SPEAT 221 (512)
Q Consensus 148 ~~~~~~~~i~~~~~~~~~~~~~~g~k~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~------~~~~~ 221 (512)
+... .+.++.++.....-+-|+|...+.|.+=.++.+...++..+....+.+.+..+.+....... .+.+.
T Consensus 153 -~~~v--gv~ig~ilm~~Yvv~GGM~atTW~Qi~qavlLi~a~~i~ai~i~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p 229 (529)
T COG4147 153 -PYHV--GVVIGGILMMVYVVLGGMKATTWVQIIQAVLLIVAALIMAIMIMWKLGGNPNPLFAEAVTVHPKDDGSDIMEP 229 (529)
T ss_pred -Ccee--ehhhHhHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHhhcCcccCcccccCC
Confidence 2122 22334444455566778888888887766666666666666666654433222222111100 00111
Q ss_pred CC-CCchhHHHHhhhhhhhhhccccccchh------hhhccCcccccchHHHHHHHHHHHHHHHHHH
Q 010352 222 GI-SSKPYAVILSFLVSQYSLYGYDSAAHL------TEETKGADKTGPIAILSSIGIISIFGWALIL 281 (512)
Q Consensus 222 ~~-~~~~~~~~~~~~~~~~~f~G~e~~~~~------~~E~k~P~k~ip~ai~~~~~~~~i~y~~~~~ 281 (512)
+. ..+...++.-.. --..|.-..++. ..++|+ -.|+..+++..+.++|+....
T Consensus 230 Gl~~~~~i~~isl~~---aLm~GTAgLPHil~RFfTvp~~k~----AR~Sv~wA~~fIg~fYi~~~~ 289 (529)
T COG4147 230 GLLYKDPIDFISLGF---ALMVGTAGLPHILMRFFTVPDAKE----ARKSVFWATGFIGIFYILTPI 289 (529)
T ss_pred CCcccCHHHHHHHHH---HHHHccCCCCeEEEEEEecCcHHH----HHHHHHHHHHHHHHHHHHHHH
Confidence 11 112233333222 223444444332 344444 446677888888888886543
No 96
>TIGR00842 bcct choline/carnitine/betaine transport. properties inherent to their polypeptide chains.
Probab=96.13 E-value=1.9 Score=44.16 Aligned_cols=97 Identities=14% Similarity=-0.021 Sum_probs=55.1
Q ss_pred hhHHHHHHHHHHHHHhHHHHHhhhhhhHHhhhcCCCCCcccccccccccCCchHHHHHHHHHHHHHHhccccccHHHHHH
Q 010352 323 GAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQLHPKHKVPSNAVWLCAAICIILGLPILKVNVVFTA 402 (512)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~ma~d~~lP~~~~f~~~~~~~~~P~~a~~~~~~i~~~~~~~~~~~~~~~~~ 402 (512)
...++....++..+....+..-+.+-++-.++.++.-+ +. + .+|...=.+++.+.. ++..+.+. .++.+..+.
T Consensus 354 ~~~i~~~l~~il~~if~vTs~DS~s~vla~~~s~~g~~--~~--e-p~~~~ri~W~v~ig~-~a~~ll~~-gG~l~~lQ~ 426 (453)
T TIGR00842 354 LGTITSALALIVIIIFFITSADSGALVLANTSSRGGQL--GE--E-PPKWVRVFWAVAIGL-IALVLLFS-GGSLAALQT 426 (453)
T ss_pred HHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhcCCCC--CC--C-CCcccchHHHHHHHH-HHHHHHHh-cCcHHHHHH
Confidence 45555555566666666666777777777674433222 10 0 113334455555533 33333332 122567777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhc
Q 010352 403 ITSICTIGWVGGYAVPIFARMVMA 426 (512)
Q Consensus 403 l~~~~~~~~~~~~~l~~~~~~~~r 426 (512)
...+.++...+...+.+.+.++.-
T Consensus 427 ~~ii~alP~~~i~~l~~~sl~k~l 450 (453)
T TIGR00842 427 TAIIAALPFSLVMLVVMASLIKDL 450 (453)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777888888887777777777553
No 97
>COG1292 BetT Choline-glycine betaine transporter [Cell envelope biogenesis, outer membrane]
Probab=95.81 E-value=2.8 Score=43.32 Aligned_cols=375 Identities=11% Similarity=0.020 Sum_probs=168.8
Q ss_pred ccccchHHHHHHHHHHhhhhhhHH-HHHHhhh---hc---CCc--------hh---HHHHH-HHHHHHHHHHHHHHHHHH
Q 010352 18 RREMTLFKTFAISFSTMTLFTGII-PLYGSSL---LY---AGP--------AS---LVWGW-VVVSFFTWFVGLAMAEIC 78 (512)
Q Consensus 18 ~r~l~~~~~~~~~~~~~~~~~gi~-~~~~~~~---~~---~G~--------~~---~~~~~-ii~~l~~~~~a~~~~el~ 78 (512)
|-+.+..+.++|-.+.-+| .|+. ....+.. .. ++. .+ ..+=| +.++.++...++.++.+.
T Consensus 85 ~PEfs~~SW~aMLFaAGmG-igl~fwgvaEp~~~y~~pp~~~~~~t~~A~~~Al~~tffHWG~~~WaiY~lvalalaYf~ 163 (537)
T COG1292 85 KPEFSTLSWLAMLFAAGMG-IGLLFWGVAEPVYYYATPPPGAEPNTTEAAEQALAYTFFHWGLHAWAIYALVALALAYFH 163 (537)
T ss_pred CCCcchhHHHHHHHHcccC-ceeeEeechhhHHHhcCCCCCCCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHHhheee
Confidence 4577888888888887776 5543 2222211 00 010 00 11111 223344444455555544
Q ss_pred hhcCCCChhhHHHhhccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccCchHHHHHHHH
Q 010352 79 SSFPTTGSLYFWAAHLASPKWGPFASWCCAWLETIGLIAGMGTQAYAGSQTLQSIILLCTGTNKDGGYFAPKWLFLCMYI 158 (512)
Q Consensus 79 ~~~p~~GG~y~~~~~~~g~~~g~~~g~~~g~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 158 (512)
-+..+.+-.-.-.+-.+|++-....|-.+-.+.+++.+...+...-..+..++..++.. .+.+.+.+.+..+-.
T Consensus 164 ~rk~~pl~lss~l~Pllg~~~~G~~G~~IDi~aiiaTl~GiATsLG~ga~qi~~Gl~~l------~gip~~~~~q~~iI~ 237 (537)
T COG1292 164 YRKGLPLLLSSALYPLLGERIKGPIGHAVDILAIIATLFGIATSLGLGALQLTAGLSYL------FGIPNSFAVQAIIIA 237 (537)
T ss_pred EecCCCchhhhhhhhhhcccccCccchhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH------hCCCChHHHHHHHHH
Confidence 33333333444445555555434466677777777777777776666666665555442 244556666665555
Q ss_pred HHHHHHHHHHhc----hhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcc-----cccccccc-----ccccccccCCCCCC
Q 010352 159 GLTIIWAVLNTF----ALEVIAFIDIISMWWQVAGGLVIIIMLPLVAL-----TTQSASYV-----FTHFEMSPEATGIS 224 (512)
Q Consensus 159 ~~~~~~~~~~~~----g~k~~~~~~~~~~~~~i~~~~~~~i~~~~~~~-----~~~~~~~~-----~~~~~~~~~~~~~~ 224 (512)
+..++.+.-... |+|..++++..+....++..++..=..+.... +.-..++. .+++ .+.+|.
T Consensus 238 vi~~~~~~S~~sGv~KGIr~LS~~n~~la~~lllfvli~GPT~fll~~~~~~iG~yl~nf~~ms~~t~p~----~~~~w~ 313 (537)
T COG1292 238 VITALFTISVWSGLDKGIRVLSNINMVLAFLLLLFVLIVGPTLFLLNSFVDNIGLYLQNFVQMSFFTDPY----GDGGWP 313 (537)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHcccCcC----CCCCcc
Confidence 555555555554 44555555544444433333222211111110 00001111 1122 222454
Q ss_pred CchhHHHHhhhhhhhhhccccccchhhhhccCcccccchHHHHHHHHHHHHHHHHHHHHHHhccChhhhhcCCC-cccC-
Q 010352 225 SKPYAVILSFLVSQYSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSN-ETAG- 302 (512)
Q Consensus 225 ~~~~~~~~~~~~~~~~f~G~e~~~~~~~E~k~P~k~ip~ai~~~~~~~~i~y~~~~~~~~~~~~~~~~l~~~~~-~~~~- 302 (512)
+ =..-+..+-|.=.-.- +......+.+ .|++.. .+.+++++-.+....-..+.+...-..+..+..+ ....
T Consensus 314 ~----~WTiFYWaWWisWsPf-VG~FIARISr-GRTIRE-fi~gvl~~P~~~~~~wftVfG~~ai~~~~~~~~~~~~~~~ 386 (537)
T COG1292 314 Q----GWTVFYWAWWISWSPF-VGMFIARISR-GRTIRE-FIVGVLLIPTLFTWLWFTVFGNYALYLIINGGGGILGLVT 386 (537)
T ss_pred c----chHHHHHHHHHHHhHH-HHHHHHHHhC-CccHHH-HHHHHHHHhHHHHHHHHHHHhhhHHHHHhccccchhhhhh
Confidence 4 1122222222111111 2222333433 366744 4444444333333333333222201111110000 0000
Q ss_pred -CCcHHHHHHHHhhcccCCcchhHHHHHHHHHHHHHhHHHHHhhhhhhHHhhhcCC-CCCcccccccccccCCchHHHHH
Q 010352 303 -AFVPAQILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDK-GIPFSSIWRQLHPKHKVPSNAVW 380 (512)
Q Consensus 303 -~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~ma~d~-~lP~~~~f~~~~~~~~~P~~a~~ 380 (512)
.++- ..+.+.++ .-| +..+..+..++....=..+..-+++-++..++.++ .-| + +...=.++++
T Consensus 387 ~~~~e-~alf~~l~---~lP-l~~v~~~~~~~~i~~FfiTsaDS~s~vl~~~ss~~~~~p--p-------~~~r~~W~v~ 452 (537)
T COG1292 387 TEGPE-TALFQVLS---HLP-LGTLTSLLALLVIAIFFVTSADSGSYVLAMISSRGGEDP--P-------RWVRVFWGVL 452 (537)
T ss_pred ccchh-hHHHHHHH---hCC-HHHHHHHHHHHHHHHHHhhccchHHHHHHHHhccCCCCC--h-------HHHHHHHHHH
Confidence 0111 12222232 122 55555555555555556667777888888877766 334 2 2222234443
Q ss_pred HHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 010352 381 LCAAICIILGLPILKVNVVFTAITSICTIGWVGGYAVPIFARMVMAE 427 (512)
Q Consensus 381 ~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~r~ 427 (512)
+++++..+++ .+..+..+...-++.+.+.+..++.+.+.++--|
T Consensus 453 -~~~ia~~lL~--~ggl~aLqt~~ii~alPF~~vll~~~~sl~k~l~ 496 (537)
T COG1292 453 -IGLIAAVLLL--IGGLEALQTAAIITALPFSLVLLVMMFSLIKDLK 496 (537)
T ss_pred -HHHHHHHHHH--hCCHHHHHHHHHHHHccHHHHHHHHHHHHHHHHH
Confidence 3333333333 3335677777777777777777777777776543
No 98
>PRK10745 trkD potassium transport protein Kup; Provisional
Probab=95.25 E-value=1.4 Score=46.52 Aligned_cols=206 Identities=9% Similarity=0.000 Sum_probs=99.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccCchHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHH
Q 010352 115 LIAGMGTQAYAGSQTLQSIILLCTGTNKDGGYFAPKWLFLCMYIGLTIIWAVLNTFALEVIAFIDIISMWWQVAGGLVII 194 (512)
Q Consensus 115 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~k~~~~~~~~~~~~~i~~~~~~~ 194 (512)
.+++++.......+-+.... ++. ++ ....+++++++.++.+--+|....++.-.-.+.+=.+.+.++.
T Consensus 117 gvITPAISVLSAVEGL~v~~---------p~l--~~-~Vvpit~~ILv~LF~iQ~~GT~~vG~~FgPIm~vWF~~i~~~G 184 (622)
T PRK10745 117 VVITPAISVMSAIEGLEIVA---------PQL--DT-YIVPLSIIVLTLLFMIQKHGTGMVGKLFAPIMLTWFLTLAVLG 184 (622)
T ss_pred cccchhHHHHHHhhcccccC---------CCC--CC-ccHHHHHHHHHHHHHHhccccHHHhhhhhhHHHHHHHHHHHHH
Confidence 45556655555555555321 122 22 2466788888888888889977766665444444444444444
Q ss_pred Hhhhhhcccc---ccccccccccccccCCCCCCCchhHHHHhhhhhhhhhcccccc-chhhhhccCcccccchHHHHHHH
Q 010352 195 IMLPLVALTT---QSASYVFTHFEMSPEATGISSKPYAVILSFLVSQYSLYGYDSA-AHLTEETKGADKTGPIAILSSIG 270 (512)
Q Consensus 195 i~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~-~~~~~E~k~P~k~ip~ai~~~~~ 270 (512)
+..+...+.- -++.+..+=+ ...++.+ +..+...+.+.+|-|+- +.++.=- +|++.++-..-+.
T Consensus 185 i~~I~~~P~Vl~AlnP~ya~~f~----~~~~~~g-----f~~LG~V~L~vTGaEALYADmGHFG---~~~Ir~aW~~~v~ 252 (622)
T PRK10745 185 LRSIIANPEVLHALNPMWAVHFF----LEYKTVS-----FFALGAVVLAITGVEALYADMGHFG---KFPIRLAWFTVVL 252 (622)
T ss_pred HHHHhcCHHHHhHhCHHHHHHHH----HhCCCce-----EEEecceeeeccchHHHhhccCCCC---ccceeeeehhhHH
Confidence 4444331110 0011111111 0111111 22344456788999985 4444333 4445555553333
Q ss_pred -HHHHHHHHHHHHHHHhccChhhhhcCCCcccCCCcHHHHHHHHhhcccCCcchhHHHHHHHHHHHHHhHHHHHhhhhhh
Q 010352 271 -IISIFGWALILALCFSIQDFSYLYDKSNETAGAFVPAQILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARV 349 (512)
Q Consensus 271 -~~~i~y~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~ 349 (512)
...+.|+.-..-+ .. +++.. .++|..... ++..+-+.+...+++.-+.-+.+.++--+
T Consensus 253 P~L~LnY~GQgA~l-l~--~p~~~-------------~NpFf~~~P-----~~~~~p~viLATlAtIIASQAvISGaFSl 311 (622)
T PRK10745 253 PSLVLNYFGQGALL-LK--NPEAI-------------KNPFFLLAP-----DWALIPLLILATLATVIASQAVISGVFSL 311 (622)
T ss_pred HHHHHHhcchHHHH-hc--Cchhh-------------cCcHHHhCC-----hhHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 3344444322222 11 11111 134555432 23444444444445444455555555556
Q ss_pred HHhhhcCCCCCccccc
Q 010352 350 VYALSRDKGIPFSSIW 365 (512)
Q Consensus 350 l~~ma~d~~lP~~~~f 365 (512)
..+.-+-|.+|.-+..
T Consensus 312 ~~QAi~Lg~~Prl~I~ 327 (622)
T PRK10745 312 TRQAVRLGYLPPMRII 327 (622)
T ss_pred HHHHHHhCCCCCceEE
Confidence 6666778999944433
No 99
>TIGR00794 kup potassium uptake protein. Proteins of the KUP family include the KUP (TrkD) protein of E. coli, a partially sequenced ORF from Lactococcus lactis, high affinity K+ uptake systems (Hak1) of the yeast Debaryomyces occidentalis as well as the fungus, Neurospora crassa, and several homologues in plants. While the E. coli KUP protein is assumed to be a secondary transporter, and uptake is blocked by protonophores such as CCCP (but not arsenate), the energy coupling mechanism has not been defined. However, the N. crassa protein has been shown to be a K+:H+ symporter, establishing that the KUP family consists of secondary carriers. The plant high affinity (20mM) K+ transporter can complement K+ uptake defects in E. coli.
Probab=95.25 E-value=0.51 Score=50.43 Aligned_cols=180 Identities=12% Similarity=-0.016 Sum_probs=88.0
Q ss_pred HHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHhhhhh-cccc---ccccccccccccccCCCCCCCch
Q 010352 152 LFLCMYIGLTIIWAVLNTFALEVIAFIDIISMWWQVAGGLVIIIMLPLV-ALTT---QSASYVFTHFEMSPEATGISSKP 227 (512)
Q Consensus 152 ~~~~i~~~~~~~~~~~~~~g~k~~~~~~~~~~~~~i~~~~~~~i~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 227 (512)
....+++++++.++.+--+|....++.-.-.+.+=.+.+.++.+.-+.. .+.- -++.+..+=+ ...++.+
T Consensus 167 ~Vv~it~~ILv~LF~iQ~~GT~kvg~~FgPim~vWF~~l~~~Gi~~I~~~~P~Vl~AlnP~ya~~f~----~~~~~~~-- 240 (688)
T TIGR00794 167 WVVPISCIILVLLFLIQRFGTAKVGFTFAPIILVWLLLLAGIGIYNIVKFNPEVLKALSPYYAVQFF----IEYGTVG-- 240 (688)
T ss_pred eehhHHHHHHHHHHHHhccccHHHhhhhhhHHHHHHHHHHHHHHHHHHhcCHHHHhHhCHHHHHHHH----HHCCCce--
Confidence 3466777888888888889977766666444444444444444444443 1110 0111111111 1111111
Q ss_pred hHHHHhhhhhhhhhcccccc-chhhhhccCcccccchHHH-HHHHHHHHHHHHHHHHHHHhccChhhhhcCCCcccCCCc
Q 010352 228 YAVILSFLVSQYSLYGYDSA-AHLTEETKGADKTGPIAIL-SSIGIISIFGWALILALCFSIQDFSYLYDKSNETAGAFV 305 (512)
Q Consensus 228 ~~~~~~~~~~~~~f~G~e~~-~~~~~E~k~P~k~ip~ai~-~~~~~~~i~y~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 305 (512)
+..+...+.+.+|-|+- +.++.=-| |++.++-. ...-...+.|+.-.. .... +++.
T Consensus 241 ---~~~LG~V~L~iTGaEALyADmGHFg~---~~Ir~aw~~~V~P~L~LnY~GQgA-~ll~--~p~~------------- 298 (688)
T TIGR00794 241 ---WVSLGGVVLSITGVEAMFADLGHFGK---LPIQLAWFTFVYPSLILCYIGQAA-YLSK--HPEA------------- 298 (688)
T ss_pred ---eeeccchhheeccHhhhhcccCCCCc---ccceeehHHHHHHHHHHHHcchHH-HHhc--Ccch-------------
Confidence 22344456789999985 44444334 44555544 222223333433221 1111 1121
Q ss_pred HHHHHHHHhhcccCCcchhHHHHHHHHHHHHHhHHHHHhhhhhhHHhhhcCCCCCcccc
Q 010352 306 PAQILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSI 364 (512)
Q Consensus 306 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~ma~d~~lP~~~~ 364 (512)
..++|..... ++..+-+.+...++..-+.-+.+.++--+..+.-+-|.+|.-+.
T Consensus 299 ~~NpFf~~~P-----~~~~~p~~vlAtlAtIIASQA~IsG~FSl~~Qai~Lg~~Pr~~I 352 (688)
T TIGR00794 299 IKNPFFLSIP-----DWALWPLFIIATLAAIIASQAVISGVFSITSQAVRLGCFPRVKI 352 (688)
T ss_pred hcCcHHHhCc-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCceE
Confidence 1134555432 33445444555455555555555556566667777899994333
No 100
>KOG2466 consensus Uridine permease/thiamine transporter/allantoin transport [Nucleotide transport and metabolism; Coenzyme transport and metabolism]
Probab=95.14 E-value=4.3 Score=41.24 Aligned_cols=316 Identities=12% Similarity=0.026 Sum_probs=144.8
Q ss_pred ccccccchHHHHHHHHHHhhhhhhHHHHHHhhhhcCCch-hHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChhhHH----
Q 010352 16 ELRREMTLFKTFAISFSTMTLFTGIIPLYGSSLLYAGPA-SLVWGWVVVSFFTWFVGLAMAEICSSFPTTGSLYFW---- 90 (512)
Q Consensus 16 ~l~r~l~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~G~~-~~~~~~ii~~l~~~~~a~~~~el~~~~p~~GG~y~~---- 90 (512)
.-||.-++++-+.+=.+.... .+.....+.+++.+=.. ..+...+++-++.......-+. .|..|.-
T Consensus 51 ~~~Rtws~~~~~~fW~~~~fn-v~Tw~ia~s~l~lGLswwq~~~tv~vG~~~~~~f~~lns~-------~G~~yhIsFpv 122 (572)
T KOG2466|consen 51 PSRRTWSWWNYIAFWLADSFN-VNTWMIAGSALELGLSWWQTWITVWVGYLFTAIFLVLNSR-------PGSDYHISFPV 122 (572)
T ss_pred cccccccHHHHHHHHHhcccc-ccceeehhhHHhccCCHHHHHHHHHHHHHHHHHHHHHccC-------CCcccccceee
Confidence 346789999988887666654 44444444444433221 1444444444443332222222 2333321
Q ss_pred HhhccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC-C-Cc-cCchHHHHHHHHHHHHH-HHH
Q 010352 91 AAHLASPKWGPFASWCCAWLETIGLIAGMGTQAYAGSQTLQSIILLCTGTNKD-G-GY-FAPKWLFLCMYIGLTII-WAV 166 (512)
Q Consensus 91 ~~~~~g~~~g~~~g~~~g~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~-~-~~-~~~~~~~~~i~~~~~~~-~~~ 166 (512)
.+|+ .+|-+.+..--..-.+.-+..-+..+...++.++.++..+.+...- + .. .+.....-+++..+.++ ...
T Consensus 123 ~sR~---sFGiygS~~pIi~R~vma~vwYg~~awiGgecV~lmL~si~~~~~hipntl~~~~~tt~e~i~FfIFwv~s~~ 199 (572)
T KOG2466|consen 123 LSRS---SFGIYGSLWPIINRVVMACVWYGVNAWIGGECVQLMLKSIFKSFSHIPNTLGKPGTTTYEFIGFFIFWVASLP 199 (572)
T ss_pred eeee---ehhhhHhHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHhhhhhcCccccCCCCCchHHHHHHHHHHHHhhh
Confidence 1121 2333223232233334445555666777777666665432211000 0 00 01112223444444444 344
Q ss_pred HHhchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccccccccccccCCCCCCCchhHHHHhhhhhhhhhccccc
Q 010352 167 LNTFALEVIAFIDIISMWWQVAGGLVIIIMLPLVALTTQSASYVFTHFEMSPEATGISSKPYAVILSFLVSQYSLYGYDS 246 (512)
Q Consensus 167 ~~~~g~k~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~ 246 (512)
..+++.....++..+-..+.....+.+.+..+.++++..+ .+++- . ..++... .+.++.++. .++.++..
T Consensus 200 ~~~~~p~~ir~lf~~ka~~t~fA~~g~LIw~l~kAhG~G~---l~~~~-s--t~~gs~~-aWa~~~~i~---~~~~~fst 269 (572)
T KOG2466|consen 200 FYWFPPYKIRHLFTWKAVLTPFAAFGFLIWLLKKAHGLGH---LFDSK-S--TVSGSAH-AWAFVRSIM---SCIANFST 269 (572)
T ss_pred eeeccHHHhhhHHHHHHhhhHHHHHHHHHHHHHhcCCccc---cccCC-C--cccccch-hHHHHHHHH---HHHhccch
Confidence 4556777777777666666666666666777766543221 12211 1 2222222 355666554 45555544
Q ss_pred ----cchhhhhccCcccccchHHHHHHHHHHHHHHHHHHHHHHhccChhhhhcCCCcccCCCcHHHHHHHHhhccc--CC
Q 010352 247 ----AAHLTEETKGADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNETAGAFVPAQILYDAFHGRY--HN 320 (512)
Q Consensus 247 ----~~~~~~E~k~P~k~ip~ai~~~~~~~~i~y~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--g~ 320 (512)
.+..+.-.|+|.+ .+.+-+.++.+..-+--+..+.... .-+.+.+..- =+|+ +.+.+.++..+ |.
T Consensus 270 l~~N~pDFsRF~ksp~a-~~~~Ql~alp~~~~l~~liGVlv~s---a~~~iYG~~~----W~Pl-dil~~~l~~~y~~G~ 340 (572)
T KOG2466|consen 270 LIVNAPDFSRFAKSPNA-IWWGQLIALPLPFGLTPLIGVLVTS---ASKIIYGTNY----WSPL-DILNQWLDTNYSAGA 340 (572)
T ss_pred hhccCchhHhhcCCCCc-cchhhhhhhhhhhhhhhheeeEehh---hhhhhhcccc----cCHH-HHHHHHhcccccccc
Confidence 4555666666643 3333333333322222221111111 1233333221 1122 55555554422 44
Q ss_pred cchhHHHHHHHHHHHHHhHHHHHhhhhhhHHhhhcCCCCCccccccc
Q 010352 321 STGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQ 367 (512)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~ma~d~~lP~~~~f~~ 367 (512)
.....++..+..++.+++..+.-..++ .+.-.+++| |.+.-
T Consensus 341 RAgvFfi~~~f~laql~~NISan~vaa----gnDl~~L~P--kyinI 381 (572)
T KOG2466|consen 341 RAGVFFIGFGFALAQLGTNISANSVAA----GNDLSALLP--KYINI 381 (572)
T ss_pred chhhhHHHHHHHHHHHhcchhcccccc----chhhHhhCc--ceEEe
Confidence 456667777777777776555433322 333447888 65543
No 101
>PLN00148 potassium transporter; Provisional
Probab=94.20 E-value=0.66 Score=50.08 Aligned_cols=182 Identities=13% Similarity=0.037 Sum_probs=86.9
Q ss_pred HHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhc-cc---cccccccccccccccCCCCCCCchh
Q 010352 153 FLCMYIGLTIIWAVLNTFALEVIAFIDIISMWWQVAGGLVIIIMLPLVA-LT---TQSASYVFTHFEMSPEATGISSKPY 228 (512)
Q Consensus 153 ~~~i~~~~~~~~~~~~~~g~k~~~~~~~~~~~~~i~~~~~~~i~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (512)
...+++++++.++.+--+|....++.-.-.+.+=++.+..+.+.-+... +. .-++.+..+=+ ......+|-
T Consensus 197 vv~is~~ILv~LF~vQ~~GT~kVg~~FgPIm~lWf~~i~~iGiyni~~~~p~Vl~AlnP~y~~~ff-~~~~~~g~~---- 271 (785)
T PLN00148 197 LVLLACVILVGLFALQHCGTHRVAFMFAPIVIIWLLSIGSIGLYNIIHWNPKIIHALSPYYIIKFF-RVTGKDGWI---- 271 (785)
T ss_pred ehhHHHHHHHHHHHHhccccHHHHhhhhhHHHHHHHHHHHHHHHHHHhcCHHHhhhcCHHHHHHHH-HhCCCceEE----
Confidence 4567778888888888899776666654444444444444444444432 10 00111111111 000112333
Q ss_pred HHHHhhhhhhhhhcccccc-chhhhhccCcccccchHHHHHHH-HHHHHHHHHHHHHHHhccChhhhhcCCCcccCCCcH
Q 010352 229 AVILSFLVSQYSLYGYDSA-AHLTEETKGADKTGPIAILSSIG-IISIFGWALILALCFSIQDFSYLYDKSNETAGAFVP 306 (512)
Q Consensus 229 ~~~~~~~~~~~~f~G~e~~-~~~~~E~k~P~k~ip~ai~~~~~-~~~i~y~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 306 (512)
.+...+.+.+|-|+- +.++.=-| |.+.++-..-+. ...+-|+.-+ +.... ++++ .
T Consensus 272 ----~LGgV~L~iTGaEALyADlGHFg~---~~Iriaw~~~V~P~L~L~Y~GQa-A~ll~--~p~~-------------~ 328 (785)
T PLN00148 272 ----SLGGILLSITGTEAMFADLGHFTA---ASIRLAFATVIYPCLVVQYMGQA-AFLSK--NIPS-------------I 328 (785)
T ss_pred ----eecchheeccchhhhhhhccCCCc---cceEEeeeehHHHHHHHHHcchH-HHHhc--Cccc-------------c
Confidence 244445789999985 44444444 445455442222 2233343322 22211 1111 1
Q ss_pred HHHHHHHhhcccCCcchhHHHHHHHHHHHHHhHHHHHhhhhhhHHhhhcCCCCCccccccc
Q 010352 307 AQILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQ 367 (512)
Q Consensus 307 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~ma~d~~lP~~~~f~~ 367 (512)
.++|..... ++..+-+.+...++..-+.-+.+.++--+..+.-+-|.+|.-|....
T Consensus 329 ~npFf~~iP-----~~~~~P~~vlAtlAtIIASQA~ISg~FSi~~Qai~Lg~fPrvkIvhT 384 (785)
T PLN00148 329 PNSFYDSIP-----DPVFWPVFVIATLAAIVGSQAVITATFSIVKQCHALGCFPRVKVVHT 384 (785)
T ss_pred cCcHHHhCC-----chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCceEEec
Confidence 134555433 22444444444444444445555555556666667799995444443
No 102
>PLN00151 potassium transporter; Provisional
Probab=94.08 E-value=0.7 Score=50.00 Aligned_cols=183 Identities=11% Similarity=0.027 Sum_probs=86.4
Q ss_pred HHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhc-cc---cccccccccccccccCCCCCCCch
Q 010352 152 LFLCMYIGLTIIWAVLNTFALEVIAFIDIISMWWQVAGGLVIIIMLPLVA-LT---TQSASYVFTHFEMSPEATGISSKP 227 (512)
Q Consensus 152 ~~~~i~~~~~~~~~~~~~~g~k~~~~~~~~~~~~~i~~~~~~~i~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~ 227 (512)
....+++++++.++.+--+|....++.-.-.+++=++.+..+.+.-++.. +. .-++.+..+=+ ......+|-
T Consensus 273 ~VV~Is~~ILv~LF~~Q~~GT~kVg~~FgPImllWFl~i~~iGiynI~~~~p~Vl~AlnP~Y~~~Ff-~~~~~~gw~--- 348 (852)
T PLN00151 273 AVVMISVAFLVILFSVQRFGTSKVGFAFGPALALWFCSLGGIGIYNLVKYDSSVFRAFNPVYIYYFF-KRNSTKAWS--- 348 (852)
T ss_pred eehhHHHHHHHHHHHHHhccchhhhhhhccHHHHHHHHHHHHHHHHHHhcCHHHHhhhCHHHHHHHH-HhCCCceEE---
Confidence 34667788888888888899777666654444444444444444444432 10 00111111111 000112333
Q ss_pred hHHHHhhhhhhhhhcccccc-chhhhhccCcccccchHHHHHHHH-HHHHHHHHHHHHHHhccChhhhhcCCCcccCCCc
Q 010352 228 YAVILSFLVSQYSLYGYDSA-AHLTEETKGADKTGPIAILSSIGI-ISIFGWALILALCFSIQDFSYLYDKSNETAGAFV 305 (512)
Q Consensus 228 ~~~~~~~~~~~~~f~G~e~~-~~~~~E~k~P~k~ip~ai~~~~~~-~~i~y~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 305 (512)
.+...+.+.+|-|+- +.++.=-| |.+.+|-..-+.= ..+.|+.- .+.... +++.
T Consensus 349 -----~LGgVvLciTGaEALfADLGHFg~---~sIqiaw~~~V~P~LlL~Y~GQ-aA~L~~--~p~~------------- 404 (852)
T PLN00151 349 -----ALGGCVLCATGSEAMFADLGYFSV---RSIQLAFTCLVLPCLLLAYMGQ-AAYLMK--NPDS------------- 404 (852)
T ss_pred -----EecceeeeeccchhhhcccCCCCc---cceeeeehhhHHHHHHHHHcch-HHHHhc--Cccc-------------
Confidence 244455799999985 44444443 4454544432222 22233322 222111 1111
Q ss_pred HHHHHHHHhhcccCCcchhHHHHHHHHHHHHHhHHHHHhhhhhhHHhhhcCCCCCccccccc
Q 010352 306 PAQILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQ 367 (512)
Q Consensus 306 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~ma~d~~lP~~~~f~~ 367 (512)
..++|..... ++..+-+.+.+.++..-+.-+.+.++--+..+.-+-|.+|.-|....
T Consensus 405 ~~npFy~svP-----~~~~wP~~vlAtlAaIIASQA~ISgtFSii~Qai~Lg~fPRvkIvHT 461 (852)
T PLN00151 405 AEQIFFSSVP-----SSLFWPVFLIANLAALIASRAMTTATFSCIKQSMALGCFPRLKIIHT 461 (852)
T ss_pred ccCcHHHhCC-----chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCceEEeC
Confidence 1134555433 22444444444444444444455555555556667799995554443
No 103
>KOG4303 consensus Vesicular inhibitory amino acid transporter [Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=93.76 E-value=5.5 Score=38.62 Aligned_cols=237 Identities=11% Similarity=0.043 Sum_probs=134.7
Q ss_pred ccccchHHHHHHHHHHhhhhhhHHH-HHHhhhhcCCchhHHHHHHHHHHHHHHHHH----HHHHHHh---hcCCCChhhH
Q 010352 18 RREMTLFKTFAISFSTMTLFTGIIP-LYGSSLLYAGPASLVWGWVVVSFFTWFVGL----AMAEICS---SFPTTGSLYF 89 (512)
Q Consensus 18 ~r~l~~~~~~~~~~~~~~~~~gi~~-~~~~~~~~~G~~~~~~~~ii~~l~~~~~a~----~~~el~~---~~p~~GG~y~ 89 (512)
+.+++-++.---..+.+ -|+|. ..+.++..+|.+ .+.+.+-.+.++--++- |..|=.. ... ---.|.
T Consensus 114 ~~kI~a~qAaWNVTNAI---QGMFivgLP~AvlhGGyw-~i~amvg~A~vCcyTGk~Li~CLYE~~~dGevVr-vRdsYv 188 (524)
T KOG4303|consen 114 SEKISALQAAWNVTNAI---QGMFIVGLPIAVLHGGYW-SIGAMVGVAYVCCYTGKLLIECLYENGEDGEVVR-VRDSYV 188 (524)
T ss_pred CCccHHHHHhhhhhhhh---heeeEeccceeeeEcchh-HHHHHHhhhhhhhccchhhhhhhccCCCCCcEEE-eehhHH
Confidence 34677887765555555 44443 334566777877 65555444443332222 2222220 000 012355
Q ss_pred HHhhc-cCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccCchHHHHHHHHHHHHHHHHHH
Q 010352 90 WAAHL-ASPKWGPFASWCCAWLETIGLIAGMGTQAYAGSQTLQSIILLCTGTNKDGGYFAPKWLFLCMYIGLTIIWAVLN 168 (512)
Q Consensus 90 ~~~~~-~g~~~g~~~g~~~g~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 168 (512)
-+.++ ++|.+|.. .+.-+..+....+...+....++.++..++. ...+...|..+.-+.+ +..--
T Consensus 189 aIA~~C~~P~lGgr---~V~~AQliELlmTCIlYvVv~gdLl~~~fP~---------~svd~~sWm~i~~a~L--Lpc~F 254 (524)
T KOG4303|consen 189 AIADFCYKPGLGGR---WVLAAQLIELLMTCILYVVVAGDLLQSCFPG---------LSVDKASWMMITSASL--LPCSF 254 (524)
T ss_pred HHHHHhcCCCcchh---eeeHHHHHHHHHHHHhhhheechhhhccCCC---------CCccccchhhhhhHHH--hhhHH
Confidence 55555 67777621 3444555565666666677777777766532 2222233333333332 33334
Q ss_pred hchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccccccccccccCCCCCCCchhHHHHhhhhhhhhhccccccc
Q 010352 169 TFALEVIAFIDIISMWWQVAGGLVIIIMLPLVALTTQSASYVFTHFEMSPEATGISSKPYAVILSFLVSQYSLYGYDSAA 248 (512)
Q Consensus 169 ~~g~k~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~ 248 (512)
+...|...++...+++.+++.=++++...+....+-..... .|.. +-..++ ..+.+..|+|+..-..+
T Consensus 255 Lk~Lk~VS~lSf~ct~sH~viN~i~v~YCLs~~~dW~wskv---~Fsi--di~~fP-------isvG~iVFsYTSqIFLP 322 (524)
T KOG4303|consen 255 LKDLKIVSRLSFFCTISHLVINLIMVLYCLSFVSDWSWSKV---TFSI--DINTFP-------ISVGMIVFSYTSQIFLP 322 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccceeE---EEEE--EcccCc-------eEEEEEEEeeeceeecc
Confidence 56788899999999999888877777666665433221111 1111 222223 34566779999988999
Q ss_pred hhhhhccCcccccchHHHHHHHHHHHHHHHHHHHHHHh
Q 010352 249 HLTEETKGADKTGPIAILSSIGIISIFGWALILALCFS 286 (512)
Q Consensus 249 ~~~~E~k~P~k~ip~ai~~~~~~~~i~y~~~~~~~~~~ 286 (512)
++-+.+|||.+ +...+-++-+...++=.+....-...
T Consensus 323 ~LEGNM~~ps~-Fn~Ml~WsHIAAaVfK~~Fg~~~fLT 359 (524)
T KOG4303|consen 323 NLEGNMKNPSQ-FNVMLKWSHIAAAVFKVVFGMLGFLT 359 (524)
T ss_pred ccccccCChhH-heeeeehHHHHHHHHHHHHHHheeee
Confidence 99999999976 66677788877777766554443333
No 104
>PF13906 AA_permease_C: C-terminus of AA_permease
Probab=93.73 E-value=0.17 Score=34.46 Aligned_cols=50 Identities=10% Similarity=0.081 Sum_probs=41.4
Q ss_pred cccCCchhhHHHHHHHHHHHHHHHhcCCCCCCCCCCCccchhHHHHHHHHHHhhhheeeccee
Q 010352 435 FYLGKASRPICLIAFLWICYTCSVFLLPTFYPISWDTFNYAPVALGVGLGLIMLWWLLDARKW 497 (512)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 497 (512)
||.| +.|.++.+++....+++...... +|+-.+++++++.+.|+.|.+|+
T Consensus 1 F~vP-~vP~~P~~si~~ni~Lm~~L~~~------------twirf~iWl~iGl~iYf~YG~~h 50 (51)
T PF13906_consen 1 FKVP-LVPFLPALSILINIYLMAQLSAL------------TWIRFGIWLAIGLVIYFGYGIRH 50 (51)
T ss_pred CCCC-cccHHHHHHHHHHHHHHHHhhHh------------HHHHHHHHHHHHHHHHHheeeec
Confidence 5778 89999999999999988765322 57889999999999999888776
No 105
>PLN00150 potassium ion transporter family protein; Provisional
Probab=93.61 E-value=0.77 Score=49.54 Aligned_cols=181 Identities=13% Similarity=0.041 Sum_probs=86.0
Q ss_pred HHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhc-cc---cccccccccccccccCCCCCCCchh
Q 010352 153 FLCMYIGLTIIWAVLNTFALEVIAFIDIISMWWQVAGGLVIIIMLPLVA-LT---TQSASYVFTHFEMSPEATGISSKPY 228 (512)
Q Consensus 153 ~~~i~~~~~~~~~~~~~~g~k~~~~~~~~~~~~~i~~~~~~~i~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (512)
...+++++++.++.+--+|....++.-.-.+++=++.+..+.+.-+... +. .-++.+..+=+.. ....+|-
T Consensus 214 Vv~is~~ILv~LF~iQ~~GT~kVg~~FgPIm~~Wf~~i~~iGiyni~~~~p~Vl~AlnP~y~~~ff~~-~~~~g~~---- 288 (779)
T PLN00150 214 VTIISCVILVILFSLQRFGTHKVSFLFAPIFLCWFFSLALIGCYNIIKWDKSVFLAFNPLYIVSFFIR-NGRQGWE---- 288 (779)
T ss_pred ehhhHHHHHHHHHHHHhccchhhhhhhccHHHHHHHHHHHHHHHHHHhcCHHHHhhcCHHHHHHHHHh-CCCceEE----
Confidence 4567778888888888899776666554444444444444444444332 10 0011111111100 0112232
Q ss_pred HHHHhhhhhhhhhcccccc-chhhhhccCcccccchHHHHHH-HHHHHHHHHHHHHHHHhccChhhhhcCCCcccCCCcH
Q 010352 229 AVILSFLVSQYSLYGYDSA-AHLTEETKGADKTGPIAILSSI-GIISIFGWALILALCFSIQDFSYLYDKSNETAGAFVP 306 (512)
Q Consensus 229 ~~~~~~~~~~~~f~G~e~~-~~~~~E~k~P~k~ip~ai~~~~-~~~~i~y~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 306 (512)
.+...+.+.+|-|+- +.++.=-| |.+.++-..-+ -...+.|+.-+ +.... ++++ .
T Consensus 289 ----~LG~V~L~iTGaEALyADlGHFg~---~~Iriaw~~~V~P~LlL~Y~GQa-A~ll~--~p~~-------------~ 345 (779)
T PLN00150 289 ----SLGGIVLCMTGTEAMFADLGHFTV---KSMQIAFTSLVYPCLLLTYLGQA-AYLVK--HMED-------------V 345 (779)
T ss_pred ----EecceeeeecchhhhhccccCCCc---cceeeeehhhHHHHHHHHHcchH-HHHhc--Cccc-------------c
Confidence 244455799999985 44444444 44545544222 22233333222 22111 1111 1
Q ss_pred HHHHHHHhhcccCCcchhHHHHHHHHHHHHHhHHHHHhhhhhhHHhhhcCCCCCcccccc
Q 010352 307 AQILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWR 366 (512)
Q Consensus 307 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~ma~d~~lP~~~~f~ 366 (512)
.++|..... ++..+-+.+...++..-+.-+.+.++--+..+.-+-|.+|.-|...
T Consensus 346 ~npFf~~iP-----~~~~~P~~vlAtlAtIIASQA~ISg~FSi~~Qai~Lg~fPrvkI~h 400 (779)
T PLN00150 346 NDPFYRSLP-----KPIYWPIFVLATCSAMIASQAMISATFSIVKQAMALGCFPRVKIVH 400 (779)
T ss_pred cCcHHHhCC-----chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCceEEe
Confidence 134555432 2244444444444544445555555556666666779999544443
No 106
>PLN00149 potassium transporter; Provisional
Probab=93.44 E-value=3 Score=45.26 Aligned_cols=186 Identities=12% Similarity=0.009 Sum_probs=87.8
Q ss_pred HHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhc-cc---cccccccccccccccCCCCCCCc
Q 010352 151 WLFLCMYIGLTIIWAVLNTFALEVIAFIDIISMWWQVAGGLVIIIMLPLVA-LT---TQSASYVFTHFEMSPEATGISSK 226 (512)
Q Consensus 151 ~~~~~i~~~~~~~~~~~~~~g~k~~~~~~~~~~~~~i~~~~~~~i~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~ 226 (512)
+....+++++++.++.+--+|....++.-.-.+++=++.+..+.+.-++.. +. .-++.+..+=+.. ....+|-
T Consensus 196 ~vvv~is~~ILv~LF~~Q~~GT~kvg~~FgPIml~Wf~~i~~iGiyni~~~~p~Vl~AlnP~y~~~f~~~-~~~~g~~-- 272 (779)
T PLN00149 196 YVEVPVACIILIGLFALQHYGTHRVGFLFAPVVLTWLLCISAIGVYNIFHWNPHVYQALSPYYMYKFLKK-TQRGGWM-- 272 (779)
T ss_pred ceehHHHHHHHHHHHHHhccccHHHhhhhhhHHHHHHHHHHHHHHHHHHhcCHhHhhhcCHHHHHHHHHH-CCCceeE--
Confidence 333567888888888888899766666554444444444444444444332 10 0011111111100 0112333
Q ss_pred hhHHHHhhhhhhhhhcccccc-chhhhhccCcccccchHHHHHHH-HHHHHHHHHHHHHHHhccChhhhhcCCCcccCCC
Q 010352 227 PYAVILSFLVSQYSLYGYDSA-AHLTEETKGADKTGPIAILSSIG-IISIFGWALILALCFSIQDFSYLYDKSNETAGAF 304 (512)
Q Consensus 227 ~~~~~~~~~~~~~~f~G~e~~-~~~~~E~k~P~k~ip~ai~~~~~-~~~i~y~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 304 (512)
.+...+.+.+|-|+- +.++.=-| |.+.+|-..-+. ...+.|+.-+ +.... +++...+.
T Consensus 273 ------~LGgV~L~iTG~EALyADlGHF~~---~~Ir~aw~~~V~P~L~L~Y~GQa-A~l~~--~p~~~~~~-------- 332 (779)
T PLN00149 273 ------SLGGILLCITGSEAMFADLGHFSQ---LSIKIAFTSLVYPSLILAYMGQA-AYLSK--HHVIESDY-------- 332 (779)
T ss_pred ------eecchhhcccchhhhhhcccCCCc---cceeeeehhhHHHHHHHHhhhHH-HHHhc--Ccchhccc--------
Confidence 244455789999985 44444333 445555443222 2333344322 22221 11211111
Q ss_pred cHHHHHHHHhhcccCCcchhHHHHHHHHHHHHHhHHHHHhhhhhhHHhhhcCCCCCcccccc
Q 010352 305 VPAQILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWR 366 (512)
Q Consensus 305 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~ma~d~~lP~~~~f~ 366 (512)
.++|..... ++..+-+.+.+.++..-+.-+.+.++--+..+.-+-|.+|.-|...
T Consensus 333 --~~pFy~~iP-----~~~~~P~~vlAtlAaIIASQA~ISg~FSii~Qa~~Lg~fPrvkIvh 387 (779)
T PLN00149 333 --RIGFYVSVP-----EKLRWPVLVIAILAAVVGSQAIITGTFSIIKQCSALGCFPKVKIVH 387 (779)
T ss_pred --cCcHHHhCC-----chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCceEEe
Confidence 123555432 2244444444444444444555555555666666779999544443
No 107
>COG3158 Kup K+ transporter [Inorganic ion transport and metabolism]
Probab=89.10 E-value=15 Score=38.21 Aligned_cols=46 Identities=4% Similarity=-0.038 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 010352 152 LFLCMYIGLTIIWAVLNTFALEVIAFIDIISMWWQVAGGLVIIIMLPLV 200 (512)
Q Consensus 152 ~~~~i~~~~~~~~~~~~~~g~k~~~~~~~~~~~~~i~~~~~~~i~~~~~ 200 (512)
....+++++++.++.+--+|....+++- .-++++=++.+...++..
T Consensus 147 ~Vvpitl~IL~~LF~iQ~~GT~~Vg~~F---GPVm~lWF~~l~~~Gl~~ 192 (627)
T COG3158 147 YVVPITLIILVLLFLIQRFGTGRVGKLF---GPVMLLWFLALAVLGLIN 192 (627)
T ss_pred ccHHHHHHHHHHHHHHhcccchhhhhhh---ccHHHHHHHHHHHHHHHH
Confidence 3456777788888888888977776665 444444444445555544
No 108
>KOG3659 consensus Sodium-neurotransmitter symporter [Signal transduction mechanisms]
Probab=86.66 E-value=31 Score=36.34 Aligned_cols=132 Identities=10% Similarity=0.036 Sum_probs=69.0
Q ss_pred chHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccccccccccccCCCCCCCchh
Q 010352 149 PKWLFLCMYIGLTIIWAVLNTFALEVIAFIDIISMWWQVAGGLVIIIMLPLVALTTQSASYVFTHFEMSPEATGISSKPY 228 (512)
Q Consensus 149 ~~~~~~~i~~~~~~~~~~~~~~g~k~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (512)
+.|...+..+++.+++.+..+.|.|.++|+..+++.+-.+++.++.+-++...+..+..++-.++ +...+.. ..
T Consensus 250 ~~~~~~lc~~lv~~liyf~~~kG~kssGKvv~vtallPy~Il~illirgl~l~ga~~g~~y~~~~-----~~~kl~~-~~ 323 (629)
T KOG3659|consen 250 PSWTLALCLVLVWLLIYFSLWKGVKSSGKVVWVTALLPYIILLILLVRGLTLPGAKNGIQYYLTP-----DIEKLKE-PS 323 (629)
T ss_pred CchHHHHHHHHHHHHHHHHHhccccccceEEeeehhhHHHHHHHHHHhcccccccccchhheecc-----cHHHHhh-HH
Confidence 34444555555666677889999999999876666665443444434444221111111111111 1111111 23
Q ss_pred HHHHhhhhhhhhh-ccccccchhhhhccCcccccchHHHHHHHHHHHHHHHHHHHHHHhc
Q 010352 229 AVILSFLVSQYSL-YGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALILALCFSI 287 (512)
Q Consensus 229 ~~~~~~~~~~~~f-~G~e~~~~~~~E~k~P~k~ip~ai~~~~~~~~i~y~~~~~~~~~~~ 287 (512)
.+..+....+++. .|+.....++.-.|- +.|.-|=.++.-++....+++...+.....
T Consensus 324 vW~dAAtqiffslg~GfG~L~AfaSyn~F-~NNc~rDAll~S~in~~ts~~sgfviFsvL 382 (629)
T KOG3659|consen 324 VWIDAATQIFFSLGPGFGVLIAFASYNKF-HNNCYRDALLTSIINCLTSFLSGFVIFSVL 382 (629)
T ss_pred HHHHHHHHHHhhcCccchhhhhhhhhccc-ccchhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555554 777777777777655 444545444444555555555544444433
No 109
>PRK15238 inner membrane transporter YjeM; Provisional
Probab=83.17 E-value=4.5 Score=42.49 Aligned_cols=24 Identities=8% Similarity=-0.287 Sum_probs=16.0
Q ss_pred hhHHHHHHHHHHhhhheeecceee
Q 010352 475 APVALGVGLGLIMLWWLLDARKWF 498 (512)
Q Consensus 475 ~~~~~~~~l~~~~~~~~~~~~~~~ 498 (512)
.+....+..++..+.|..|+|+.+
T Consensus 472 ~~~~~~i~~~~~~~~~~~~~~~~~ 495 (496)
T PRK15238 472 MIGGPVFFSILAWIIYQNYEKKMA 495 (496)
T ss_pred HHHHHHHHHHHHHHHHHhhchhcc
Confidence 445666666666777777777765
No 110
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=77.69 E-value=15 Score=33.52 Aligned_cols=15 Identities=33% Similarity=0.627 Sum_probs=6.5
Q ss_pred HHHHHHHHHHhcCCC
Q 010352 449 FLWICYTCSVFLLPT 463 (512)
Q Consensus 449 ~~~~~~~~~~~~~~~ 463 (512)
+++.++.......|+
T Consensus 158 ~~w~~~~~~~~~lp~ 172 (206)
T PF06570_consen 158 VLWIVIFVLTSFLPP 172 (206)
T ss_pred HHHHHHHHHHHHccc
Confidence 344444444444554
No 111
>COG4146 Predicted symporter [General function prediction only]
Probab=76.56 E-value=84 Score=31.20 Aligned_cols=47 Identities=19% Similarity=0.231 Sum_probs=30.0
Q ss_pred hhhHHHhhccCCCCCchhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Q 010352 86 SLYFWAAHLASPKWGPFASWCCAWLETIGL-IAGMGTQAYAGSQTLQSIILL 136 (512)
Q Consensus 86 G~y~~~~~~~g~~~g~~~g~~~g~~~~~~~-~~~~a~~~~~~~~~~~~~~~~ 136 (512)
.+-.+.++- +.+..-.+...++.+.| ....+...+..+-.++++++.
T Consensus 104 TIPdFlE~R----fD~~TR~Iis~lFLi~y~~~flPtvLYsGAla~nsiF~l 151 (571)
T COG4146 104 TIPDFLEER----FDKTTRMIISFLFLIAYGVCFLPTVLYSGALALNSIFHL 151 (571)
T ss_pred cchHHHHHh----hhhHHHHHHHHHHHHHHHHHhhhHHHhhhhHHHhhhhch
Confidence 445566665 44445667777777775 444566667777777777765
No 112
>COG4858 Uncharacterized membrane-bound protein conserved in bacteria [Function unknown]
Probab=73.32 E-value=22 Score=31.21 Aligned_cols=20 Identities=35% Similarity=0.632 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHhcCCCC
Q 010352 445 CLIAFLWICYTCSVFLLPTF 464 (512)
Q Consensus 445 ~~~~~~~~~~~~~~~~~~~~ 464 (512)
.....+|..+.++..+.|+.
T Consensus 169 ~~sm~lWi~v~i~t~~lPts 188 (226)
T COG4858 169 VLSMLLWIAVMIATVFLPTS 188 (226)
T ss_pred HHHHHHHHHHHHHHhhCCCc
Confidence 33345555555555555644
No 113
>KOG3660 consensus Sodium-neurotransmitter symporter [Signal transduction mechanisms]
Probab=73.16 E-value=1.4e+02 Score=32.26 Aligned_cols=47 Identities=9% Similarity=-0.034 Sum_probs=33.3
Q ss_pred HHHHHHHH-HHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 010352 155 CMYIGLTI-IWAVLNTFALEVIAFIDIISMWWQVAGGLVIIIMLPLVA 201 (512)
Q Consensus 155 ~i~~~~~~-~~~~~~~~g~k~~~~~~~~~~~~~i~~~~~~~i~~~~~~ 201 (512)
..++.+.+ ++.+.-.+|+|..+|+..+...+--+.++++.+-++...
T Consensus 217 ~~~l~~~Wliv~~~i~KGvks~GKvvY~~a~fPyviL~iLliRgvTL~ 264 (629)
T KOG3660|consen 217 ALCLALAWLIVFFCIWKGVKSSGKVVYFTATFPYVILIVLLIRGVTLP 264 (629)
T ss_pred HHHHHHHHHHHHHHHhhcccccCcEEEEEehhHHHHHHHHHHHHccCC
Confidence 44444444 466677899999999998887777777776666666553
No 114
>PF02554 CstA: Carbon starvation protein CstA; InterPro: IPR003706 Escherichia coli induces the synthesis of at least 30 proteins at the onset of carbon starvation, two-thirds of which are positively regulated by the cyclic AMP (cAMP) and cAMP receptor protein (CRP) complex. This family consists of carbon starvation protein CstA a predicted membrane protein. It has been suggested that CstA is involved in peptide utilization [].; GO: 0009267 cellular response to starvation, 0016020 membrane
Probab=71.76 E-value=1.1e+02 Score=30.45 Aligned_cols=101 Identities=16% Similarity=-0.017 Sum_probs=56.9
Q ss_pred cchHHHHHHHHHHhhhhhhHHHHHHhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC-hhhHHHhhccCCCC
Q 010352 21 MTLFKTFAISFSTMTLFTGIIPLYGSSLLYAGPASLVWGWVVVSFFTWFVGLAMAEICSSFPTTG-SLYFWAAHLASPKW 99 (512)
Q Consensus 21 l~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~G~~~~~~~~ii~~l~~~~~a~~~~el~~~~p~~G-G~y~~~~~~~g~~~ 99 (512)
.+.+.++..=..++.| .|-...+-.+ ..-|+..+.+..+++.++.-. ..=|..+-...++.| +.-.-+++. .
T Consensus 52 ~~~~vlfghhf~sIAG-aGPI~GPi~a-a~~GwlPa~lWI~~G~if~Ga-VHD~~sl~~SvR~~G~Si~~i~~~~----l 124 (376)
T PF02554_consen 52 TNKWVLFGHHFASIAG-AGPIVGPILA-AQFGWLPALLWIVFGCIFAGA-VHDYGSLMASVRHKGKSIGEIAGKY----L 124 (376)
T ss_pred CchHHhhHHHHHHHhc-cccchHHHHH-HHhcchHHHHHHHHccHHHHH-HHHHHHHhhhhcCCCccHHHHHHHH----H
Confidence 4556677777777766 6655445444 456776444444445444333 333444444444444 566666666 5
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010352 100 GPFASWCCAWLETIGLIAGMGTQAYAGSQ 128 (512)
Q Consensus 100 g~~~g~~~g~~~~~~~~~~~a~~~~~~~~ 128 (512)
|+..+.+.....++..++..+..+...++
T Consensus 125 G~~~~~lf~~f~~~~lilV~avF~~v~a~ 153 (376)
T PF02554_consen 125 GKRAKKLFLIFIFFLLILVIAVFADVVAN 153 (376)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66567777777776666666555444333
No 115
>KOG2349 consensus Na+:iodide/myo-inositol/multivitamin symporters [Inorganic ion transport and metabolism]
Probab=58.84 E-value=1.9e+02 Score=30.87 Aligned_cols=235 Identities=9% Similarity=0.050 Sum_probs=103.6
Q ss_pred ChhhHHHhhccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccCchHHHHHHHHHHHHHH
Q 010352 85 GSLYFWAAHLASPKWGPFASWCCAWLETIGLIAGMGTQAYAGSQTLQSIILLCTGTNKDGGYFAPKWLFLCMYIGLTIIW 164 (512)
Q Consensus 85 GG~y~~~~~~~g~~~g~~~g~~~g~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 164 (512)
...|.|.++-++++ .-.+....+.+......+...+.-+..+++..+. ... .....+...+...
T Consensus 108 ~~~~eYl~~Rf~~~----~r~l~~l~f~l~~~~~l~v~~y~pal~~~qvtg~----------~~~-l~~~~~~~ic~~Y- 171 (585)
T KOG2349|consen 108 TTMYEYLEKRFGGR----VRYLATLSFILMIFLYLPVDMYAPALAINQVTGI----------NLY-LIVVILGLICVFY- 171 (585)
T ss_pred eehhHHHHHHhccc----chhhHHHHHHHHHHhheeeeEeehHHHHHHHhcc----------Cce-eehHHHHHHHHHH-
Confidence 47888888886665 2445555555555555555555555555554321 111 1111111122111
Q ss_pred HHHHhchhh---HHHHHHHHHHHHHHHHHHHHHHhhhhhccccc--------ccccccc-ccccccCCCCCCCchhHHHH
Q 010352 165 AVLNTFALE---VIAFIDIISMWWQVAGGLVIIIMLPLVALTTQ--------SASYVFT-HFEMSPEATGISSKPYAVIL 232 (512)
Q Consensus 165 ~~~~~~g~k---~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~--------~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 232 (512)
+ ..-|.| ++.-+| +.+++.....+++.+....+... .....+. ++.. ++.. .+.++.++.
T Consensus 172 T--~~GGlkaVi~TDv~Q---~~iml~~~~~v~i~gt~~vGG~~~V~e~a~~~gr~~~~~~~~~--dp~v-r~t~W~~~~ 243 (585)
T KOG2349|consen 172 T--ALGGLKAVIWTDVVQ---TVIMLGGVLAVMIKGTMKVGGLGRVLEKAFDAGRVNFVAEFLR--DPTV-RHTPWSLLF 243 (585)
T ss_pred H--HhcCeeEEEEhhHHH---HHHHHHHHHHHhheeehhcCcccceeeecccCCceeecccccC--CCcc-cccchhHhc
Confidence 1 222333 455566 44445555555554444332110 0011111 1101 2221 112344666
Q ss_pred hhhhhhhhhccccccch-hhhhccCcccccchHHHHHHHHHHHHHHHHHHHHHHh------ccChh-hhhcCCCcccCCC
Q 010352 233 SFLVSQYSLYGYDSAAH-LTEETKGADKTGPIAILSSIGIISIFGWALILALCFS------IQDFS-YLYDKSNETAGAF 304 (512)
Q Consensus 233 ~~~~~~~~f~G~e~~~~-~~~E~k~P~k~ip~ai~~~~~~~~i~y~~~~~~~~~~------~~~~~-~l~~~~~~~~~~~ 304 (512)
+-.....++.|.+...- ----.|+ .|...+++........+...+....-... ..|.. .....++ +
T Consensus 244 Gg~~~~l~~~~vnQ~~VQR~lsl~s-lk~ak~~~~~~~~~~~l~~~~~~~~G~i~~~~Y~~Cdpl~~g~v~~~D-----~ 317 (585)
T KOG2349|consen 244 GGTIMWLSYYGVNQLIVQRYLSLPS-LKHAKPSLLLFGYGVLLIMFIMVFVGMIIYALYTDCDPLCGGLVGCPD-----Q 317 (585)
T ss_pred CCcHHHHHHHhhhHHHHhHHhcccc-HHHhhhhhhhhhhHHHHHHHhhcccceeEeeecccCCcccccccCCcc-----c
Confidence 65555566777666431 1111222 45555666655555544443332221111 11111 1222222 1
Q ss_pred cHHHHHHHHhhcccCCcchhHHHHHHHHHHHHHhHHHHHhhhhhhHHh
Q 010352 305 VPAQILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYA 352 (512)
Q Consensus 305 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~ 352 (512)
-..-...+.++...|.+ -++..++..+.++++-+.+++.|-+.++
T Consensus 318 ~~P~fV~d~~~~~pGl~---GLfia~vfsA~LSsLSS~~NS~s~v~~e 362 (585)
T KOG2349|consen 318 LLPLFVMDLMGHLPGLR---GLFIAVVFSAALSSLSSIFNSLSTVFLE 362 (585)
T ss_pred cccHHHHHhcCCCCCcc---chhHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 22244566666444443 3444555566666666677777666654
No 116
>COG1966 CstA Carbon starvation protein, predicted membrane protein [Signal transduction mechanisms]
Probab=52.53 E-value=3.1e+02 Score=28.99 Aligned_cols=104 Identities=18% Similarity=0.008 Sum_probs=55.6
Q ss_pred cchHHHHHHHHHHhhhhhhHHHHHHhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC-hhhHHHhhccCCCC
Q 010352 21 MTLFKTFAISFSTMTLFTGIIPLYGSSLLYAGPASLVWGWVVVSFFTWFVGLAMAEICSSFPTTG-SLYFWAAHLASPKW 99 (512)
Q Consensus 21 l~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~G~~~~~~~~ii~~l~~~~~a~~~~el~~~~p~~G-G~y~~~~~~~g~~~ 99 (512)
.+.+-++..=..++.| .|-...+..+.+ -|-....+..+++.+++-..-= |.-+-....+.| +.-.-+++- .
T Consensus 52 tnk~vlfGhHFaaIAG-AGPivGPvlAAq-~G~Lp~~LWIl~G~VfaGaVhD-~~~L~~SvR~~G~Si~~ia~~~----l 124 (575)
T COG1966 52 TNKWVLFGHHFASIAG-AGPIVGPALAAQ-YGWLPAFLWILLGCVFAGAVHD-YFSLMLSVRHGGKSIGEIAGKY----L 124 (575)
T ss_pred CCchhhhHHHHHHHhc-cCcchhHHHHHH-hcCcHHHHHHHHhhhhhhhhhh-hhheeeeeccCCccHHHHHHHH----h
Confidence 4445566666677766 665555544444 4422234333445444433322 222222233333 555555555 6
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010352 100 GPFASWCCAWLETIGLIAGMGTQAYAGSQTLQ 131 (512)
Q Consensus 100 g~~~g~~~g~~~~~~~~~~~a~~~~~~~~~~~ 131 (512)
|+..+.+.....++-.++..+..+...++.+.
T Consensus 125 G~~a~~~~~~~~l~iliiv~Avfa~vv~~~l~ 156 (575)
T COG1966 125 GRTAKVFFLLLALILLILVGAVFAAVIAKLLA 156 (575)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 77677777777776666666666665555543
No 117
>TIGR01197 nramp NRAMP (natural resistance-associated macrophage protein) metal ion transporters. This model describes the Nramp metal ion transporter family. Historically, in mammals these proteins have been functionally characterized as proteins involved in the host pathogen resistance, hence the name - NRAMP. At least two isoforms Nramp1 and Nramp2 have been identified. However the exact mechanism of pathogen resistance was unclear, until it was demonstrated by expression cloning and electrophysiological techniques that this protein was a metal ion transporter. It was also independently demonstrated that a microcytic anemia (mk) locus in mouse, encodes a metal ion transporter (DCT1 or Nramp2). The transporter has a broad range of substrate specificity that include Fe+2, Zn+2, Mn+2, Co+2, Cd+2, Cu+2, Ni+2 and Pb+2. The uptake of these metal ions is coupled to proton symport. Metal ions are essential cofactors in a number of biological process including, oxidative phosphorylation, gene
Probab=50.70 E-value=2.8e+02 Score=28.05 Aligned_cols=40 Identities=13% Similarity=0.032 Sum_probs=27.3
Q ss_pred HHhhcccCCcchhHHHHHHHHHHHHHhHHHHHhhhhhhHHh
Q 010352 312 DAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYA 352 (512)
Q Consensus 312 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~ 352 (512)
+.+++.+|+. ...+..++.+.+..++..+..++..-+..+
T Consensus 284 ~~L~p~~G~~-a~~lF~igLlaAG~sS~it~~~ag~~v~~g 323 (390)
T TIGR01197 284 VLLGCLFSPA-AGYIFAVGLLAAGQSSGMVGTYSGQFVMEG 323 (390)
T ss_pred HHHHHHhhHH-HHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 3344444443 778888888889888888888766555443
No 118
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=48.90 E-value=5.7 Score=37.15 Aligned_cols=22 Identities=9% Similarity=0.292 Sum_probs=0.0
Q ss_pred cccccCCchHHHHHHHHHHHHH
Q 010352 367 QLHPKHKVPSNAVWLCAAICII 388 (512)
Q Consensus 367 ~~~~~~~~P~~a~~~~~~i~~~ 388 (512)
+++||.-.|..++.+...+-.+
T Consensus 13 ~r~pr~p~~~a~l~~~~llll~ 34 (381)
T PF05297_consen 13 RRPPRCPQPHASLLFGLLLLLV 34 (381)
T ss_dssp ----------------------
T ss_pred CCCCCCCCcchhHHHHHHHHHH
Confidence 5566777777777665554443
No 119
>PRK03557 zinc transporter ZitB; Provisional
Probab=47.50 E-value=1.4e+02 Score=29.20 Aligned_cols=33 Identities=6% Similarity=-0.038 Sum_probs=16.5
Q ss_pred HHHHHHHhhcccCccCCCcccCCchhhHHHHHH
Q 010352 417 VPIFARMVMAEQKFNAGPFYLGKASRPICLIAF 449 (512)
Q Consensus 417 l~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 449 (512)
+...+...-+|+++++-||-..|..+..+.+..
T Consensus 63 ~~l~a~~~s~kp~d~~hpyG~~r~E~l~al~~~ 95 (312)
T PRK03557 63 FALLAVQFSRRPPTIRHTFGWLRLTTLAAFVNA 95 (312)
T ss_pred HHHHHHHHhcCCCCCCCCCchHHHHHHHHHHHH
Confidence 333444444455555666655555555444433
No 120
>COG4025 Predicted membrane protein [Function unknown]
Probab=47.25 E-value=2.1e+02 Score=26.37 Aligned_cols=16 Identities=31% Similarity=0.322 Sum_probs=12.8
Q ss_pred hhhhhHHhhhcCCCCC
Q 010352 345 SAARVVYALSRDKGIP 360 (512)
Q Consensus 345 ~~sR~l~~ma~d~~lP 360 (512)
..-|-..++.||+++|
T Consensus 55 ~~ve~v~e~~re~~i~ 70 (284)
T COG4025 55 SKVEKVMEKVREFQIP 70 (284)
T ss_pred HHHHHHHHHHhcCCCc
Confidence 4567788999999886
No 121
>TIGR01167 LPXTG_anchor LPXTG-motif cell wall anchor domain. A common feature of this proteins containing this domain appears to be a high proportion of charged and zwitterionic residues immediatedly upstream of the LPXTG motif. This model differs from other descriptions of the LPXTG region by including a portion of that upstream charged region.
Probab=43.31 E-value=35 Score=20.56 Aligned_cols=13 Identities=23% Similarity=-0.049 Sum_probs=4.7
Q ss_pred HHHHHHHHHHhhh
Q 010352 477 VALGVGLGLIMLW 489 (512)
Q Consensus 477 ~~~~~~l~~~~~~ 489 (512)
...++.++.+..+
T Consensus 14 ~~~G~~l~~~~~~ 26 (34)
T TIGR01167 14 LLLGLLLLGLGGL 26 (34)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 122
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=42.95 E-value=13 Score=30.54 Aligned_cols=18 Identities=0% Similarity=-0.105 Sum_probs=8.1
Q ss_pred HHHHHhhhheeecceeee
Q 010352 482 GLGLIMLWWLLDARKWFT 499 (512)
Q Consensus 482 ~l~~~~~~~~~~~~~~~~ 499 (512)
+.++.+++|+++|+|++.
T Consensus 78 Ig~Illi~y~irR~~Kk~ 95 (122)
T PF01102_consen 78 IGIILLISYCIRRLRKKS 95 (122)
T ss_dssp HHHHHHHHHHHHHHS---
T ss_pred HHHHHHHHHHHHHHhccC
Confidence 334445566666555554
No 123
>PF14256 YwiC: YwiC-like protein
Probab=38.67 E-value=2.2e+02 Score=23.64 Aligned_cols=19 Identities=16% Similarity=0.280 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHhhc
Q 010352 408 TIGWVGGYAVPIFARMVMA 426 (512)
Q Consensus 408 ~~~~~~~~~l~~~~~~~~r 426 (512)
....+..|....-.....|
T Consensus 31 ~~aw~~~yl~~~p~~~~~k 49 (129)
T PF14256_consen 31 LLAWLFGYLAFYPFLLWLK 49 (129)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 4555556666443343333
No 124
>PRK09509 fieF ferrous iron efflux protein F; Reviewed
Probab=38.61 E-value=1.1e+02 Score=29.71 Aligned_cols=33 Identities=15% Similarity=0.069 Sum_probs=16.4
Q ss_pred HHHHHHHHhhcccCccCCCcccCCchhhHHHHH
Q 010352 416 AVPIFARMVMAEQKFNAGPFYLGKASRPICLIA 448 (512)
Q Consensus 416 ~l~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~ 448 (512)
.+..++..+.+|+++++.||-..|..+..+.+.
T Consensus 54 ~l~l~~~~~s~k~~d~~~pyG~~r~E~l~~l~~ 86 (299)
T PRK09509 54 LTNLLVVRYSLQPADDEHTFGHGKAESLAALAQ 86 (299)
T ss_pred HHHHHHHHHhCCCCCCCCCCccHHHHHHHHHHH
Confidence 333344444445556666765554555544433
No 125
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [], [], []. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. This domain is found in a wide variety of permeases, as well as several hypothetical proteins. ; GO: 0006810 transport, 0055085 transmembrane transport, 0016020 membrane
Probab=37.54 E-value=4.9e+02 Score=26.99 Aligned_cols=210 Identities=14% Similarity=0.062 Sum_probs=95.8
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChhhHHHhhccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010352 52 GPASLVWGWVVVSFFTWFVGLAMAEICSSFPTTGSLYFWAAHLASPKWGPFASWCCAWLETIGLIAGMGTQAYAGSQTLQ 131 (512)
Q Consensus 52 G~~~~~~~~ii~~l~~~~~a~~~~el~~~~p~~GG~y~~~~~~~g~~~g~~~g~~~g~~~~~~~~~~~a~~~~~~~~~~~ 131 (512)
.+...+++.++..+.+.+.+-.-...-+.=....=...+..+. .|-..|+. -|..++..............++.+
T Consensus 31 ~~la~li~~i~~~~~~~~~~ems~~~p~~Gg~y~y~~~~lg~~----~Gf~~gw~-y~~~~~~~~~~~~~~~~~~~~~~~ 105 (478)
T PF00324_consen 31 APLAYLIAGIIVLLVALSLAEMSRRFPSAGGFYAYASRGLGPA----LGFAAGWA-YWLSYIAAIAAEATAAGSFLQFWG 105 (478)
T ss_pred chhHhHHHHHHHHhhhhhhhhhhhhhccccchhhhhhhccCCc----CCceeeHH-HHHHHHHHHHhhhhhhhhhhcccc
Confidence 3554555666666666665555444432211111111222333 33334555 345554444444444444555542
Q ss_pred HHHHHhcCCCCCC-CccCchHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHH-Hhhhhhcccccc---
Q 010352 132 SIILLCTGTNKDG-GYFAPKWLFLCMYIGLTIIWAVLNTFALEVIAFIDIISMWWQVAGGLVII-IMLPLVALTTQS--- 206 (512)
Q Consensus 132 ~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~g~k~~~~~~~~~~~~~i~~~~~~~-i~~~~~~~~~~~--- 206 (512)
..-+. . .+.... ....+.++.+.++.....+...........+.+..++.+++.. +.........+.
T Consensus 106 ~~~~~-------~~~~~~~~-~~~~i~~~~~~~l~~~gv~~~~~~~~~~~~i~~~~li~~ii~~~i~~~~~~~~~~~~~~ 177 (478)
T PF00324_consen 106 YFPGL-------PSTWVWGI-LIAIIFILLITLLNLFGVRVSGKIEFILTIIKLIALIAFIIVGVIILFFGGGPSNGRYW 177 (478)
T ss_pred ccccc-------cccccccc-hhhhhhhhhhhhhhhhhhhccchHHHHHHHHhhhHhhhhhhhcccccccccCCCccccc
Confidence 22222 1 111111 3344445555667777777777766666666666666666555 544333211111
Q ss_pred -------ccccccccccccCCCCCCCchhHHHHhhhhhhhhhccccccchhhhhcc-CcccccchHHHHHHHH-HHHHHH
Q 010352 207 -------ASYVFTHFEMSPEATGISSKPYAVILSFLVSQYSLYGYDSAAHLTEETK-GADKTGPIAILSSIGI-ISIFGW 277 (512)
Q Consensus 207 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~~~E~k-~P~k~ip~ai~~~~~~-~~i~y~ 277 (512)
+.+..... . |+..++.+ ...-+.-...++-.+...-..+.-+++=| +-.|.+..++....+. +...|.
T Consensus 178 ~~~~~~~~~~~~~~~-~-~~~~~~~~-~~~~~~~~~~af~G~e~~a~~a~E~k~P~k~IPra~~~~~~~~~v~y~~~~~~ 254 (478)
T PF00324_consen 178 GDPGSFANNFPPGFT-D-PSGGGFSG-FFAALVFAFFAFVGFESIAILAEEAKNPRKTIPRATLLSVLRIGVFYVLTSYA 254 (478)
T ss_pred ccccccccccccccc-c-ccccchhH-HHHhhhhhhcccccccccccccccCCCchhhhhhHhhhhhhhhhhhhhhhhhh
Confidence 11211111 1 14444444 33333333344446655555555555544 5467776776655544 333343
No 126
>PF04235 DUF418: Protein of unknown function (DUF418); InterPro: IPR007349 Tihs is a probable integral membrane protein. It is usually found associated with (IPR007299 from INTERPRO).
Probab=36.44 E-value=1.3e+02 Score=25.96 Aligned_cols=13 Identities=31% Similarity=0.463 Sum_probs=7.6
Q ss_pred eecceeeecCccc
Q 010352 492 LDARKWFTGPVRN 504 (512)
Q Consensus 492 ~~~~~~~~~~~~~ 504 (512)
.+.|+.+++|.+.
T Consensus 142 ~W~~~f~~GPlE~ 154 (163)
T PF04235_consen 142 LWLRRFRRGPLEW 154 (163)
T ss_pred HHHHhcCcCcHHH
Confidence 3455666677553
No 127
>PRK11056 hypothetical protein; Provisional
Probab=33.10 E-value=2.6e+02 Score=22.79 Aligned_cols=24 Identities=13% Similarity=0.078 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHhcCCCCCCCCCCC
Q 010352 448 AFLWICYTCSVFLLPTFYPISWDT 471 (512)
Q Consensus 448 ~~~~~~~~~~~~~~~~~~~~~~~~ 471 (512)
+..+......-.+.-..+|.-..+
T Consensus 70 acFflG~f~ySA~vraeyPeiGSN 93 (120)
T PRK11056 70 ACFFLGVFLYSAFVRAEYPEIGSN 93 (120)
T ss_pred HHHHHHHHHHHHHHHhcCcccccc
Confidence 333333333344444455544444
No 128
>PF11174 DUF2970: Protein of unknown function (DUF2970); InterPro: IPR021344 This short family is conserved in Proteobacteria. The function is not known.
Probab=30.10 E-value=1.5e+02 Score=20.60 Aligned_cols=43 Identities=9% Similarity=0.126 Sum_probs=26.4
Q ss_pred HhhhhhhhhhccccccchhhhhccCcccccchHHHHHHHHHHHHHH
Q 010352 232 LSFLVSQYSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGW 277 (512)
Q Consensus 232 ~~~~~~~~~f~G~e~~~~~~~E~k~P~k~ip~ai~~~~~~~~i~y~ 277 (512)
..+-...|+|.|-.+-.+.-+|.++.+ |...+..-++..++++
T Consensus 3 ~~~~sVl~af~GVqs~~~~e~Df~~~~---p~~~Ii~gii~~~~fV 45 (56)
T PF11174_consen 3 QVVKSVLWAFFGVQSSKNRERDFAQGS---PVHFIIVGIILAALFV 45 (56)
T ss_pred HHHHHHHHHHhCcCcchhHHHHHHcCC---CchHHHHHHHHHHHHH
Confidence 345566799999999888888876532 3444444333333333
No 129
>TIGR00842 bcct choline/carnitine/betaine transport. properties inherent to their polypeptide chains.
Probab=29.36 E-value=6.6e+02 Score=26.05 Aligned_cols=29 Identities=10% Similarity=0.002 Sum_probs=20.6
Q ss_pred ccccchHHHHHHHHHHhhhhhhHHHHHHh
Q 010352 18 RREMTLFKTFAISFSTMTLFTGIIPLYGS 46 (512)
Q Consensus 18 ~r~l~~~~~~~~~~~~~~~~~gi~~~~~~ 46 (512)
|.+.+..+.++|.++.-+|..-++....+
T Consensus 34 kPefS~~sW~aMlf~aG~G~gllfwgvaE 62 (453)
T TIGR00842 34 KPEFSTLSWLAMLFAAGMGIGLMFWGVAE 62 (453)
T ss_pred CCCCcchHHHHHHHHHhhhhhhhhhHhhh
Confidence 56889999999999888884444444443
No 130
>PF07226 DUF1422: Protein of unknown function (DUF1422); InterPro: IPR009867 This family consists of several hypothetical bacterial proteins of around 120 residues in length. The function of this family is unknown.
Probab=27.84 E-value=3.3e+02 Score=22.08 Aligned_cols=24 Identities=13% Similarity=0.105 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHhcCCCCCCCCCCC
Q 010352 448 AFLWICYTCSVFLLPTFYPISWDT 471 (512)
Q Consensus 448 ~~~~~~~~~~~~~~~~~~~~~~~~ 471 (512)
+..+......-.+.-..+|.-..+
T Consensus 70 acFflG~f~ySA~vraqyPeiGSN 93 (117)
T PF07226_consen 70 ACFFLGLFGYSAFVRAQYPEIGSN 93 (117)
T ss_pred HHHHHHHHHHHHHHHHhchhhhhh
Confidence 333333333333444445544443
No 131
>COG1294 AppB Cytochrome bd-type quinol oxidase, subunit 2 [Energy production and conversion]
Probab=27.83 E-value=6.1e+02 Score=25.18 Aligned_cols=26 Identities=12% Similarity=0.041 Sum_probs=12.1
Q ss_pred HHHHHHhHHHHHhhhhhhHHhhhcCCCC
Q 010352 332 WGSFFFGGLSVTTSAARVVYALSRDKGI 359 (512)
Q Consensus 332 ~~~~~~~~~~~~~~~sR~l~~ma~d~~l 359 (512)
++.........+.+++-.+.. .||.+
T Consensus 170 l~gl~~~~~~~l~Ga~~l~~k--T~g~l 195 (346)
T COG1294 170 LCGLGLVLMYVLHGAAWLLLK--TEGAL 195 (346)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--hccHH
Confidence 333444444455555555544 44444
No 132
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=27.72 E-value=57 Score=20.90 Aligned_cols=16 Identities=13% Similarity=0.025 Sum_probs=7.0
Q ss_pred HHHHHHHhhhheeecc
Q 010352 480 GVGLGLIMLWWLLDAR 495 (512)
Q Consensus 480 ~~~l~~~~~~~~~~~~ 495 (512)
++.++++.+.++.|||
T Consensus 23 vI~~vl~~~l~~~~rR 38 (40)
T PF08693_consen 23 VIIIVLGAFLFFWYRR 38 (40)
T ss_pred HHHHHHHHHhheEEec
Confidence 3444444444444444
No 133
>PTZ00206 amino acid transporter; Provisional
Probab=26.84 E-value=7.3e+02 Score=25.74 Aligned_cols=38 Identities=13% Similarity=0.072 Sum_probs=31.3
Q ss_pred hhHHHHHHHHHHHHHhHHHHHhhhhhhHHhhhcCCCCC
Q 010352 323 GAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIP 360 (512)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~ma~d~~lP 360 (512)
...+..+..++..++...+++...+..+...-++...|
T Consensus 135 g~~~v~~~~~~~~~G~cv~YlIiigd~l~~~l~~~~~~ 172 (467)
T PTZ00206 135 GSYYVAATRAFHGFSACVAYVISVGDILSATLKGTNAP 172 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence 78888999999999999999999998887765544444
No 134
>PRK00968 tetrahydromethanopterin S-methyltransferase subunit D; Provisional
Probab=25.75 E-value=90 Score=28.17 Aligned_cols=32 Identities=22% Similarity=0.232 Sum_probs=24.4
Q ss_pred hhhhccCcc-cccchHHHHHHHHHHHHHHHHHH
Q 010352 250 LTEETKGAD-KTGPIAILSSIGIISIFGWALIL 281 (512)
Q Consensus 250 ~~~E~k~P~-k~ip~ai~~~~~~~~i~y~~~~~ 281 (512)
.-|-..||| |.+||+++.|.+...++-+....
T Consensus 203 TIEGfHDPKFKr~p~~vias~vaS~~~gii~v~ 235 (240)
T PRK00968 203 TIEGFHDPKFKRWPRAVIASFVASLVCGIVAVL 235 (240)
T ss_pred eeecCCCcccccchHHHHHHHHHHHHHHHHHHH
Confidence 346677897 88999999998887777665443
No 135
>PF03806 ABG_transport: AbgT putative transporter family; InterPro: IPR004697 The p-aminobenzoyl-glutamate transporter family includes two putative transporters, the AbgT protein of Escherichia coli and MtrF of Neisseria gonorrhoeae. AbgT expression is apparently cryptic in wild type cells, but when present on a high copy number plasmid, or when expressed at higher levels due to mutation, it allows utilization of p-aminobenzoyl-glutamate as a source of p-aminobenzoate for p-aminobenzoate auxotrophs []. p-Aminobenzoate is a constituent of, and a precursor for, the biosynthesis of folic acid. It is not currently known if AbgT is naturally involved in transporting p-aminobenzoyl-glutamate, or if it only becomes involved when under altered regulation. MtrF is an inner membrane protein which, together with the MtrCDE efflux pump, is required for high-level resistance to hydrophobic antimicrobial agents in N. gonorrhoeae []. Its role in this process is not known, but it has been suggested that it may be a component of the efflux pump which is dispensible for basal activity, but required for high-level activity [].
Probab=25.44 E-value=8.1e+02 Score=25.75 Aligned_cols=98 Identities=17% Similarity=0.198 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCChhhHHHhhccCCCCCchhHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHH
Q 010352 62 VVSFFTWFVGLAMAEICSSFPTTGSLYFWAAHLASPKWGPFASWCCAWLETIGLIA------GMGTQAYAGSQTLQSIIL 135 (512)
Q Consensus 62 i~~l~~~~~a~~~~el~~~~p~~GG~y~~~~~~~g~~~g~~~g~~~g~~~~~~~~~------~~a~~~~~~~~~~~~~~~ 135 (512)
+..++.+..+..|...+.++++..-.....++. .....++++-.......+. .....++-.++.+++.
T Consensus 302 iI~l~F~i~GivYG~~sG~iks~~Dv~~~M~~~----m~~m~~yiVL~F~aaQFia~F~~Snlg~i~Av~GA~~L~~~-- 375 (502)
T PF03806_consen 302 IIFLFFLIPGIVYGIASGTIKSDKDVVKMMSKG----MKSMAPYIVLAFFAAQFIAYFNWSNLGTILAVKGAEFLKSL-- 375 (502)
T ss_pred HHHHHHHHHHHHHhhhhceecCHHHHHHHHHHH----HHHhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhc--
Confidence 344567788999999999998888888888887 4443444443332222111 1222233444444431
Q ss_pred HhcCCCCCCCccCchHHHHHHHHHHHHHHHHHHhchhhHHHHHH
Q 010352 136 LCTGTNKDGGYFAPKWLFLCMYIGLTIIWAVLNTFALEVIAFID 179 (512)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~k~~~~~~ 179 (512)
+ .+. ..+.+.++++...+|++=...++|..
T Consensus 376 ---------~--~~~---~~l~i~fill~a~iNLfi~S~SaKWa 405 (502)
T PF03806_consen 376 ---------G--LPG---IPLIIGFILLTAFINLFIGSASAKWA 405 (502)
T ss_pred ---------C--CCc---HHHHHHHHHHHHHHHHhhhcchhhHH
Confidence 1 122 33445677788889988777666655
No 136
>PRK13108 prolipoprotein diacylglyceryl transferase; Reviewed
Probab=24.96 E-value=2.7e+02 Score=28.82 Aligned_cols=21 Identities=19% Similarity=0.124 Sum_probs=9.6
Q ss_pred hhHHHHHHHHHHHHHHHhcCC
Q 010352 442 RPICLIAFLWICYTCSVFLLP 462 (512)
Q Consensus 442 ~~~~~~~~~~~~~~~~~~~~~ 462 (512)
....+..+...+.=+++-++-
T Consensus 224 ~lf~lYli~Ygi~RF~iEflR 244 (460)
T PRK13108 224 RLFGFYVAFYCAGRFCVELLR 244 (460)
T ss_pred hHHHHHHHHHHHHHHHhhhhc
Confidence 344444444444444444443
No 137
>COG0053 MMT1 Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]
Probab=24.33 E-value=2.6e+02 Score=27.15 Aligned_cols=43 Identities=16% Similarity=0.144 Sum_probs=22.6
Q ss_pred HHHHHHHhhcccCccCCCcccCCchhhHHHHHHHHHHHHHHHh
Q 010352 417 VPIFARMVMAEQKFNAGPFYLGKASRPICLIAFLWICYTCSVF 459 (512)
Q Consensus 417 l~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 459 (512)
+..++..+-+++++++-||-..|.......+..++.++..+..
T Consensus 57 ~~l~~l~~s~kp~d~~HpyGh~k~E~l~sl~~~~~i~~~g~~i 99 (304)
T COG0053 57 IVLIGLRISSKPPDRDHPYGHGKAETLASLIVSILIFAAGFEI 99 (304)
T ss_pred HHHHHHHHhcCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHH
Confidence 3344444445566666777666555555554444444443333
No 138
>TIGR01297 CDF cation diffusion facilitator family transporter. This model describes a broadly distributed family of transporters, a number of which have been shown to transport divalent cations of cobalt, cadmium and/or zinc. The family has six predicted transmembrane domains. Members of the family are variable in length because of variably sized inserts, often containing low-complexity sequence.
Probab=21.37 E-value=2.3e+02 Score=26.69 Aligned_cols=30 Identities=20% Similarity=0.232 Sum_probs=14.8
Q ss_pred HHHHHhhcccCccCCCcccCCchhhHHHHH
Q 010352 419 IFARMVMAEQKFNAGPFYLGKASRPICLIA 448 (512)
Q Consensus 419 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~ 448 (512)
..+....+|+++++.||-..|..+..+.+.
T Consensus 36 l~~~~~~~~~~d~~~pyG~~r~E~l~~l~~ 65 (268)
T TIGR01297 36 LLALRISRRPADERHPFGHGRAEILAALLN 65 (268)
T ss_pred HHHHHHhCCCCCCCCCCchHHHHHHHHHHH
Confidence 333444445556666665554444444433
No 139
>PF09874 DUF2101: Predicted membrane protein (DUF2101); InterPro: IPR018663 This family of conserved hypothetical proteins has no known function.
Probab=20.78 E-value=4.9e+02 Score=23.45 Aligned_cols=26 Identities=12% Similarity=0.005 Sum_probs=13.3
Q ss_pred cchhHHHHHHHHHHhhhheeecceee
Q 010352 473 NYAPVALGVGLGLIMLWWLLDARKWF 498 (512)
Q Consensus 473 ~~~~~~~~~~l~~~~~~~~~~~~~~~ 498 (512)
.+..+...+.+...+..|+.|.|..+
T Consensus 117 ~y~~yL~~v~laVl~fr~~Fr~ky~R 142 (206)
T PF09874_consen 117 PYYTYLGFVFLAVLAFRYYFRSKYGR 142 (206)
T ss_pred hHHHHHHHHHHHHHHHhhheeeeecc
Confidence 34444444555555555656555443
No 140
>PRK09928 choline transport protein BetT; Provisional
Probab=20.65 E-value=9.1e+02 Score=26.51 Aligned_cols=6 Identities=50% Similarity=1.138 Sum_probs=2.4
Q ss_pred HHHHHH
Q 010352 274 IFGWAL 279 (512)
Q Consensus 274 i~y~~~ 279 (512)
++|...
T Consensus 323 iFYWAW 328 (679)
T PRK09928 323 LFFWAW 328 (679)
T ss_pred HHHHHH
Confidence 344433
No 141
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=20.63 E-value=56 Score=30.95 Aligned_cols=21 Identities=24% Similarity=0.215 Sum_probs=10.6
Q ss_pred HHHHHHhhhheeecceeeecC
Q 010352 481 VGLGLIMLWWLLDARKWFTGP 501 (512)
Q Consensus 481 ~~l~~~~~~~~~~~~~~~~~~ 501 (512)
+.+++.++|.++||||++.++
T Consensus 271 l~vvliiLYiWlyrrRK~swk 291 (295)
T TIGR01478 271 LTVVLIILYIWLYRRRKKSWK 291 (295)
T ss_pred HHHHHHHHHHHHHHhhccccc
Confidence 333344455555666665543
No 142
>PRK10881 putative hydrogenase 2 b cytochrome subunit; Provisional
Probab=20.05 E-value=9.1e+02 Score=24.39 Aligned_cols=30 Identities=7% Similarity=-0.144 Sum_probs=16.0
Q ss_pred HHHHHHHHHhchhhHHHHHHHHHHHHHHHH
Q 010352 160 LTIIWAVLNTFALEVIAFIDIISMWWQVAG 189 (512)
Q Consensus 160 ~~~~~~~~~~~g~k~~~~~~~~~~~~~i~~ 189 (512)
...+......++.|....+.+......+..
T Consensus 71 ~~~is~~~~vf~~~~~~~i~r~a~~~a~~~ 100 (394)
T PRK10881 71 GWALAWLVYVFNRGQYHPLVRPALLASLFG 100 (394)
T ss_pred HHHHHHHHHHhCccchhHHHHHHHHHHHHH
Confidence 334444445566766666665544444433
Done!