Query 010352
Match_columns 512
No_of_seqs 144 out of 1635
Neff 9.6
Searched_HMMs 29240
Date Mon Mar 25 04:56:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010352.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010352hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3l1l_A Arginine/agmatine antip 100.0 1.4E-50 4.8E-55 417.5 38.4 434 15-505 4-439 (445)
2 4djk_A Probable glutamate/gamm 100.0 7.8E-51 2.7E-55 426.7 36.2 444 12-493 4-464 (511)
3 3gia_A Uncharacterized protein 100.0 9.7E-47 3.3E-51 388.6 36.9 367 16-429 3-369 (444)
4 2jln_A MHP1; hydantoin, transp 99.1 2.1E-06 7.3E-11 88.4 39.2 291 17-353 23-329 (501)
5 2a65_A Leutaa, Na(+):neurotran 98.4 0.00014 4.7E-09 74.3 26.8 124 151-277 166-291 (519)
6 3dh4_A Sodium/glucose cotransp 98.4 0.00069 2.4E-08 70.2 31.3 110 18-134 19-129 (530)
7 2xq2_A Sodium/glucose cotransp 98.0 0.0043 1.5E-07 65.1 29.0 300 18-350 48-377 (593)
8 2wsw_A BCCT family betaine/car 92.1 11 0.00037 37.9 33.5 94 323-425 408-502 (509)
9 4ain_A Glycine betaine transpo 91.3 14 0.00046 37.5 22.1 91 323-425 409-503 (539)
10 2ks1_B Epidermal growth factor 40.9 19 0.00065 22.7 2.4 6 486-491 28-33 (44)
11 2l2t_A Receptor tyrosine-prote 35.9 16 0.00054 23.1 1.4 6 490-495 32-37 (44)
12 3j1z_P YIIP, cation efflux fam 30.8 76 0.0026 29.5 6.0 28 420-447 60-87 (306)
13 3h90_A Ferrous-iron efflux pum 23.6 1.7E+02 0.0058 26.6 7.0 30 419-448 50-79 (283)
No 1
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=100.00 E-value=1.4e-50 Score=417.48 Aligned_cols=434 Identities=17% Similarity=0.169 Sum_probs=341.1
Q ss_pred cccccccchHHHHHHHHHHhhhhhhHHHHHHhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChhhHHHhhc
Q 010352 15 QELRREMTLFKTFAISFSTMTLFTGIIPLYGSSLLYAGPASLVWGWVVVSFFTWFVGLAMAEICSSFPTTGSLYFWAAHL 94 (512)
Q Consensus 15 ~~l~r~l~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~G~~~~~~~~ii~~l~~~~~a~~~~el~~~~p~~GG~y~~~~~~ 94 (512)
+++||++++++++.+.++.++| +|++..++. ...+|+. ++++|+++++++++.+++|+|+++++|++||.|.|++|.
T Consensus 4 ~~~~r~l~~~~~~~l~ig~~iG-~Gif~~~~~-~~~~G~~-~~~~~li~~~~~~~~a~~~~el~~~~p~~Gg~y~~~~~~ 80 (445)
T 3l1l_A 4 DADAHKVGLIPVTLMVSGAIMG-SGVFLLPAN-LASTGGI-AIYGWLVTIIGALGLSMVYAKMSFLDPSPGGSYAYARRC 80 (445)
T ss_dssp ---CCCBCHHHHHHHHHHHHCS-SHHHHHHHH-HHHHCTH-HHHHHHHHHHHHHHHHHHHHHHHHHCCCTTTHHHHHHHH
T ss_pred CCCCCcccHHHHHHHHHHhHHh-hhHHhhHHH-HHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHccCCCCCCchhhHHhH
Confidence 3567999999999999999999 999988765 5567887 899999999999999999999999999999999999999
Q ss_pred cCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccCchHHHHHHHHHHHHHHHHHHhchhhH
Q 010352 95 ASPKWGPFASWCCAWLETIGLIAGMGTQAYAGSQTLQSIILLCTGTNKDGGYFAPKWLFLCMYIGLTIIWAVLNTFALEV 174 (512)
Q Consensus 95 ~g~~~g~~~g~~~g~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~k~ 174 (512)
+||..|++.+|.+++.+....+..+...++++...++. ..+++...+++++++++++.+|++|+|.
T Consensus 81 ----~G~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~in~~g~~~ 146 (445)
T 3l1l_A 81 ----FGPFLGYQTNVLYWLACWIGNIAMVVIGVGYLSYFFPI----------LKDPWVLTITCVVVLWIFVLLNIVGPKM 146 (445)
T ss_dssp ----SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCGG----------GGSHHHHHHHHHHHHHHHHHHHHHCHHH
T ss_pred ----cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcc----------ccccHHHHHHHHHHHHHHHHHHHhchHH
Confidence 78888999999999999888888888888887754321 1234667788888999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhccccccccccccccccccCCCCCCCchhHHHHhhhhhhhhhccccccchhhhhc
Q 010352 175 IAFIDIISMWWQVAGGLVIIIMLPLVALTTQSASYVFTHFEMSPEATGISSKPYAVILSFLVSQYSLYGYDSAAHLTEET 254 (512)
Q Consensus 175 ~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~~~E~ 254 (512)
.++++.+++.++++.++++++.++...... ++ .+++ ++.++++ ..++..++...+|+|.|+|..++++||+
T Consensus 147 ~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~---~~-~~~~----~~~~~~~-~~~~~~~~~~~~~af~G~e~~~~~~~e~ 217 (445)
T 3l1l_A 147 ITRVQAVATVLALIPIVGIAVFGWFWFRGE---TY-MAAW----NVSGLGT-FGAIQSTLNVTLWSFIGVESASVAAGVV 217 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSTTCCCC---CC-CCC----------------HHHHHHHHHHTTTTTTHHHHGGGGB
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhChh---hc-cccc----CccCCcc-HHHHHHHHHHHHHHHHhHHHHHHHHHHh
Confidence 999999999999998888887776553211 11 1222 2222221 3458899999999999999999999999
Q ss_pred cCcccccchHHHHHHHHHHHHHHHHHHHHHHhccChhhhhcCCCcccCCCcHHHHHHHHhhcccCCcchhHHHHHHHHHH
Q 010352 255 KGADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNETAGAFVPAQILYDAFHGRYHNSTGAIILLIVIWGS 334 (512)
Q Consensus 255 k~P~k~ip~ai~~~~~~~~i~y~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 334 (512)
|||+|++||++..+..++.++|++..++..... +++++.++ ..|..+.+.... | ++...++.+..+++
T Consensus 218 k~p~r~ip~a~~~~~~~~~~~y~~~~~~~~~~~-~~~~~~~~------~~p~~~~~~~~~----g-~~~~~~~~~~~~~~ 285 (445)
T 3l1l_A 218 KNPKRNVPIATIGGVLIAAVCYVLSTTAIMGMI-PNAALRVS------ASPFGDAARMAL----G-DTAGAIVSFCAAAG 285 (445)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-CTTTSCST------TCTHHHHHHHHH----C-TTHHHHHHHHHHHH
T ss_pred cCccccccHHHHHHHHHHHHHHHHHHHHHHhcC-CHHHHhcc------CcHHHHHHHHHh----h-HHHHHHHHHHHHHH
Confidence 999999999999999999999999999999888 66666443 235545544443 3 34778888999999
Q ss_pred HHHhHHHHHhhhhhhHHhhhcCCCCCcccccccccccCCchHHHHHHHHHHHHHHhcccccc--HHHHHHHHHHHHHHHH
Q 010352 335 FFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQLHPKHKVPSNAVWLCAAICIILGLPILKV--NVVFTAITSICTIGWV 412 (512)
Q Consensus 335 ~~~~~~~~~~~~sR~l~~ma~d~~lP~~~~f~~~~~~~~~P~~a~~~~~~i~~~~~~~~~~~--~~~~~~l~~~~~~~~~ 412 (512)
.+++.++.+.+.+|++++|+|||.+| ++|+|+| |+++|+++++++.+++.++.+....+ .+.++.+.++.+....
T Consensus 286 ~~~~~~~~~~~~sR~~~~~a~dg~lP--~~~~~~~-~~~~P~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 362 (445)
T 3l1l_A 286 CLGSLGGWTLLAGQTAKAAADDGLFP--PIFARVN-KAGTPVAGLIIVGILMTIFQLSSISPNATKEFGLVSSVSVIFTL 362 (445)
T ss_dssp HTTTHHHHHHHHHHHHHHHHHTTSSC--GGGGCCC-TTCCCHHHHHHHHHHHHHHHHSTTSHHHHCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCc--HHHHhcC-CCCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999 9999999 78999999999999888766544443 2468899999999999
Q ss_pred HHHHHHHHHHHhhcccCccCCCcccCCchhhHHHHHHHHHHHHHHHhcCCCCCCCCCCCccchhHHHHHHHHHHhhhhee
Q 010352 413 GGYAVPIFARMVMAEQKFNAGPFYLGKASRPICLIAFLWICYTCSVFLLPTFYPISWDTFNYAPVALGVGLGLIMLWWLL 492 (512)
Q Consensus 413 ~~~~l~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 492 (512)
+.|.+.+++.+++|+|+. + .|.| ..+.++.++.+.+.+.++....+ ......++++.+..+|..
T Consensus 363 ~~y~~~~~~~~~~r~~~~--~-~r~~-~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~g~~~y~~ 426 (445)
T 3l1l_A 363 VPYLYTCAALLLLGHGHF--G-KARP-AYLAVTTIAFLYCIWAVVGSGAK------------EVMWSFVTLMVITAMYAL 426 (445)
T ss_dssp HHHHHHHHHHHHHHSSSS--G-GGCT-TTHHHHHHHHHHHHHHHHHSCHH------------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcCc--c-cccc-hhHHHHHHHHHHHHHHHHHcCHH------------HHHHHHHHHHHHHHHHHH
Confidence 999999999998876543 2 1445 77888888888877765543111 223444555566666655
Q ss_pred ecceeeecCcccc
Q 010352 493 DARKWFTGPVRNI 505 (512)
Q Consensus 493 ~~~~~~~~~~~~~ 505 (512)
++||++++++.+.
T Consensus 427 ~~~~~~~~~~~~~ 439 (445)
T 3l1l_A 427 NYNRLHKNPYPLD 439 (445)
T ss_dssp HHSTTCCCSSCCC
T ss_pred HhhhcccCccccc
Confidence 5555544444443
No 2
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=100.00 E-value=7.8e-51 Score=426.75 Aligned_cols=444 Identities=15% Similarity=0.139 Sum_probs=336.9
Q ss_pred CCCcccccccchHHHHHHHHHHhhhhhhHHHHHHhhhhcCCchhHHHHHHHHHHHH-HHHHHHHHHHHh--hcCCCChhh
Q 010352 12 GYKQELRREMTLFKTFAISFSTMTLFTGIIPLYGSSLLYAGPASLVWGWVVVSFFT-WFVGLAMAEICS--SFPTTGSLY 88 (512)
Q Consensus 12 ~~~~~l~r~l~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~G~~~~~~~~ii~~l~~-~~~a~~~~el~~--~~p~~GG~y 88 (512)
++++++||+++++++++++++.+++..++ +. ...+|+. .++.++++.++. ++.+++++|+++ ++| +||.|
T Consensus 4 ~~~~~~~r~l~~~~~~~l~~~~~ig~~~~---~~--~~~~G~~-~~~~~~i~~~~~~l~~al~~ael~s~~~~P-~GG~y 76 (511)
T 4djk_A 4 SVQTGKAKQLTLLGFFAITASMVMAVYEY---PT--FATSGFS-LVFFLLLGGILWFIPVGLCAAEMATVDGWE-EGGVF 76 (511)
T ss_dssp --------CCCHHHHHHHTGGGGCCGGGH---HH--HHTTTTH-HHHHHHHHHHHTHHHHHHHHHHHHTTSCC----CHH
T ss_pred cccCccCccccHHHHHHHHHHHHHhhchh---HH--HHhhHHH-HHHHHHHHHHHHHHHHHHHHHHHcccccCC-CCChh
Confidence 34567899999999999999999763332 22 3568887 666677766664 679999999999 999 99999
Q ss_pred HHHhhccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccCchHHHHHHHHHHHHHHHHHH
Q 010352 89 FWAAHLASPKWGPFASWCCAWLETIGLIAGMGTQAYAGSQTLQSIILLCTGTNKDGGYFAPKWLFLCMYIGLTIIWAVLN 168 (512)
Q Consensus 89 ~~~~~~~g~~~g~~~g~~~g~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 168 (512)
.|++|. +||..||+++|.+|+.+....+......++++.+.+.. +++..++|...+++++++++++.+|
T Consensus 77 ~~~~~~----~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------p~~~~~~~~~~~~~~~~~~~~~~in 145 (511)
T 4djk_A 77 AWVSNT----LGPRWGFAAISFGYLQIAIGFIPMLYFVLGALSYILKW-------PALNEDPITKTIAALIILWALALTQ 145 (511)
T ss_dssp HHHHHH----HCHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHTTTTC-------GGGTSCSSHHHHHHHHHHHHHHHHH
T ss_pred hhHHhh----cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-------cccccCcHHHHHHHHHHHHHHHHHH
Confidence 999999 66677999999999999998888888888877654211 3455667778888899999999999
Q ss_pred hchhhHHHHHHHHHHHHHHHH-HHHHHHhhhhhcccccccc--ccccccccccCCCCCCCchhHHHHhhhhhhhhhcccc
Q 010352 169 TFALEVIAFIDIISMWWQVAG-GLVIIIMLPLVALTTQSAS--YVFTHFEMSPEATGISSKPYAVILSFLVSQYSLYGYD 245 (512)
Q Consensus 169 ~~g~k~~~~~~~~~~~~~i~~-~~~~~i~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e 245 (512)
++|+|..++++.+.+.++++. ++++++.++.....+++.+ ...+++ . |+ +.+ .+.+.++...+|+|.|+|
T Consensus 146 ~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~-~~---~~~--~~~~~~~~~~~~a~~G~e 218 (511)
T 4djk_A 146 FGGTKYTARIAKVGFFAGILLPAFILIALAAIYLHSGAPVAIEMDSKTF-F-PD---FSK--VGTLVVFVAFILSYMGVE 218 (511)
T ss_dssp HTCSSSHHHHTHHHHHHTTHHHHHHHHHHHHHHTC------------CC-C-CC---TTS--TTTTTTHHHHHHHHTTGG
T ss_pred HhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCccccc-C-CC---ccc--chHHHHHHHHHHHHhhHH
Confidence 999999999999988886554 4445555554332222211 112222 1 11 111 123445667789999999
Q ss_pred ccchhhhhccCcccccchHHHHHHHHHHHHHHHHHHHHHHhccChhhhhcCCCcccCCCcHHHHHHHHhhcccC--Ccch
Q 010352 246 SAAHLTEETKGADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNETAGAFVPAQILYDAFHGRYH--NSTG 323 (512)
Q Consensus 246 ~~~~~~~E~k~P~k~ip~ai~~~~~~~~i~y~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g--~~~~ 323 (512)
.+++++||+|||+|++||++..++.++.++|++..++..... +.+++..+ .+..+.+...++.. | .++.
T Consensus 219 ~~~~~a~E~k~P~k~ip~ai~~~~~~~~~~y~~~~~~~~~~~-~~~~~~~~-------~~~~~~~~~~~~~~-g~~~~~~ 289 (511)
T 4djk_A 219 ASATHVNEMSNPGRDYPLAMLLLMVAAICLSSVGGLSIAMVI-PGNEINLS-------AGVMQTFTVLMSHV-APEIEWT 289 (511)
T ss_dssp GGTGGGSSSSCCTTTHHHHHHHHHHHHHHHHHHHHHHHHTTS-CTTSCCSS-------STHHHHHHHHHSSS-CSSCTTH
T ss_pred HHHHHHHhccCcccchhHHHHHHHHHHHHHHHHHHHHHHeec-CHhhcccc-------chHHHHHHHHHHHh-CccchHH
Confidence 999999999999999999999999999999999999999998 55554332 23446666666554 6 5667
Q ss_pred hHHHHHHHHHHHHHhHHHHHhhhhhhHHhhhcCCCCCcccccccccccCCchHHHHHHHHHHHHHHhcccccc-----HH
Q 010352 324 AIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQLHPKHKVPSNAVWLCAAICIILGLPILKV-----NV 398 (512)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~sR~l~~ma~d~~lP~~~~f~~~~~~~~~P~~a~~~~~~i~~~~~~~~~~~-----~~ 398 (512)
..++.+..+++.+++.++.+.+.+|++++|||||.+| ++|+|+| |+++|+++++++.++..+... ..++ .+
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~ardg~lP--~~~~~~~-~~~~P~~ai~~~~~~~~l~~~-~~~~~~~~~~~ 365 (511)
T 4djk_A 290 VRVISALLLLGVLAEIASWIVGPSRGMYVTAQKNLLP--AAFAKMN-KNGVPVTLVISQLVITSIALI-ILTNTGGGNNM 365 (511)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTHHHHHTCHHHHGGGCS--SSCCCCC-SSSCCCHHHHHHHHHHHHHHH-HHHSSSSHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCccc--HHHHhcC-CCCCcHHHHHHHHHHHHHHHH-HhccccchHHH
Confidence 8888899999999999999999999999999999999 9999999 789999999998544433222 2233 56
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccc-CccCCCcccC--Cch-hhHHHHHHHHHHHHHHHhcCCCCCCCCCCCccc
Q 010352 399 VFTAITSICTIGWVGGYAVPIFARMVMAEQ-KFNAGPFYLG--KAS-RPICLIAFLWICYTCSVFLLPTFYPISWDTFNY 474 (512)
Q Consensus 399 ~~~~l~~~~~~~~~~~~~l~~~~~~~~r~~-~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (512)
.++.+.++.+....+.|.+++++.+++|+| ++.+||||.| +++ +.+++++++++++.++..++|+..+.+.++++|
T Consensus 366 ~f~~l~~~~~~~~~~~y~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 445 (511)
T 4djk_A 366 SFLIALALTVVIYLCAYFMLFIGYIVLVLKHPDLKRTFNIPGGKGVKLVVAIVGLLTSIMAFIVSFLPPDNIQGDSTDMY 445 (511)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSCCCSCCCSSTTHHHHHHHHHHHHHHHHHHHHTTCCCSCSTTCCCCCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCeecCCCchHHHHHHHHHHHHHHHHHHeeeeCCccccCCchHHH
Confidence 789999999999999999998888777654 4667899998 334 567889999999999999999888888888899
Q ss_pred hhHHHHHHHHHHhhhheee
Q 010352 475 APVALGVGLGLIMLWWLLD 493 (512)
Q Consensus 475 ~~~~~~~~l~~~~~~~~~~ 493 (512)
.....+..+++..++|+.+
T Consensus 446 ~~~~~~~~~~~~~i~~~~~ 464 (511)
T 4djk_A 446 VELLVVSFLVVLALPFILY 464 (511)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 8877777777777777663
No 3
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=100.00 E-value=9.7e-47 Score=388.65 Aligned_cols=367 Identities=13% Similarity=0.149 Sum_probs=309.1
Q ss_pred ccccccchHHHHHHHHHHhhhhhhHHHHHHhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChhhHHHhhcc
Q 010352 16 ELRREMTLFKTFAISFSTMTLFTGIIPLYGSSLLYAGPASLVWGWVVVSFFTWFVGLAMAEICSSFPTTGSLYFWAAHLA 95 (512)
Q Consensus 16 ~l~r~l~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~G~~~~~~~~ii~~l~~~~~a~~~~el~~~~p~~GG~y~~~~~~~ 95 (512)
+.||++++++.++++++.++| +|++..++.....+|+. ++++|+++++++++.+++++|+++++|++||.|.|++|.+
T Consensus 3 ~~~r~l~~~~~~~l~~g~~iG-~gi~~~~~~~~~~~G~~-~~~~~li~~~~~~~~~~~~~el~~~~P~~Gg~y~~~~~~~ 80 (444)
T 3gia_A 3 LKNKKLSLWEAVSMAVGVMIG-ASIFSIFGVGAKIAGRN-LPETFILSGIYALLVAYSYTKLGAKIVSNAGPIAFIHKAI 80 (444)
T ss_dssp CCCCCBCHHHHHHHHHHHHHH-HHTTTSHHHHHHHHGGG-HHHHHHHHHHHHHHHHHHHHHHHTTCCCTTTHHHHHHHHH
T ss_pred ccCCcCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHhCcH-HHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHhHHHHh
Confidence 457999999999999999998 99999888888889996 9999999999999999999999999999999999999996
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccCchHHHHHHHHHHHHHHHHHHhchhhHH
Q 010352 96 SPKWGPFASWCCAWLETIGLIAGMGTQAYAGSQTLQSIILLCTGTNKDGGYFAPKWLFLCMYIGLTIIWAVLNTFALEVI 175 (512)
Q Consensus 96 g~~~g~~~g~~~g~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~k~~ 175 (512)
|+++ .+...+|.+|+.+....+..+...++++...++ ...+++...+++++++++++.+|++|+|..
T Consensus 81 G~~~---~~g~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~in~~g~~~~ 147 (444)
T 3gia_A 81 GDNI---ITGALSILLWMSYVISIALFAKGFAGYFLPLIN----------APINTFNIAITEIGIVAFFTALNFFGSKAV 147 (444)
T ss_dssp CSSH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT----------CCCCHHHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred Ccch---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC----------CCCchHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 6642 233458999999999999999999999987652 234556667788889999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhccccccccccccccccccCCCCCCCchhHHHHhhhhhhhhhccccccchhhhhcc
Q 010352 176 AFIDIISMWWQVAGGLVIIIMLPLVALTTQSASYVFTHFEMSPEATGISSKPYAVILSFLVSQYSLYGYDSAAHLTEETK 255 (512)
Q Consensus 176 ~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~~~E~k 255 (512)
++++.+++.++++.++++++.++..... +++ .+..++++..+++.++...+|+|.|+|.+++++||+|
T Consensus 148 ~~~~~~~~~~~i~~~~~~ii~~~~~~~~--------~~~----~~~~~~~g~~~~~~~~~~~~~a~~G~e~~~~~~~e~k 215 (444)
T 3gia_A 148 GRAEFFIVLVKLLILGLFIFAGLITIHP--------SYV----IPDLAPSAVSGMIFASAIFFLSYMGFGVITNASEHIE 215 (444)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCG--------GGT----SCCCSHHHHHHHHHHHHHGGGGGTHHHHHHTTGGGBS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCh--------hhc----CCCCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHcc
Confidence 9999999999999999888888765421 112 1111222234688889999999999999999999999
Q ss_pred CcccccchHHHHHHHHHHHHHHHHHHHHHHhccChhhhhcCCCcccCCCcHHHHHHHHhhcccCCcchhHHHHHHHHHHH
Q 010352 256 GADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNETAGAFVPAQILYDAFHGRYHNSTGAIILLIVIWGSF 335 (512)
Q Consensus 256 ~P~k~ip~ai~~~~~~~~i~y~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 335 (512)
||+|++||++..+..++.++|++..++..... +++++.+++ +.+..+......+ ++...++.+..+++.
T Consensus 216 ~P~r~ip~ai~~~~~~~~~~y~~~~~~~~~~~-~~~~l~~~~-----~~~~~~~~~~~~g-----~~~~~~i~~~~~~~~ 284 (444)
T 3gia_A 216 NPKKNVPRAIFISILIVMFVYVGVAISAIGNL-PIDELIKAS-----ENALAVAAKPFLG-----NLGFLLISIGALFSI 284 (444)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-CHHHHHHTG-----GGHHHHHHHHHHH-----HHHHHHHHHHHHHHH
T ss_pred CcccchhHHHHHHHHHHHHHHHHHHHHHHhCC-CHHHHhccc-----chhHHHHHHHHhh-----HHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999888 777776543 2344344444432 336678888899999
Q ss_pred HHhHHHHHhhhhhhHHhhhcCCCCCcccccccccccCCchHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHH
Q 010352 336 FFGGLSVTTSAARVVYALSRDKGIPFSSIWRQLHPKHKVPSNAVWLCAAICIILGLPILKVNVVFTAITSICTIGWVGGY 415 (512)
Q Consensus 336 ~~~~~~~~~~~sR~l~~ma~d~~lP~~~~f~~~~~~~~~P~~a~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 415 (512)
+++.++.+.+.+|++++|||||.+| ++|+|+| | ++|.++++++.+++.++.+.. +++.+.++.+....+.|
T Consensus 285 ~~~~~~~~~~~sR~l~a~a~dg~lP--~~f~~~~-~-~~P~~a~~~~~~~~~~~~~~~-----~~~~l~~~~~~~~~~~~ 355 (444)
T 3gia_A 285 SSAMNATIYGGANVAYSLAKDGELP--EFFERKV-W-FKSTEGLYITSALGVLFALLF-----NMEGVASITSAVFMVIY 355 (444)
T ss_dssp HHHHHHHHTTTHHHHHHHHHHSSCC--SSCCTTS-C-CSCTHHHHHHHHHHHHHHHHS-----CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCC--HHHhCCC-C-CCCcHHHHHHHHHHHHHHHHc-----CHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999 9999988 5 459999999999998876632 46789999999999999
Q ss_pred HHHHHHHHhhcccC
Q 010352 416 AVPIFARMVMAEQK 429 (512)
Q Consensus 416 ~l~~~~~~~~r~~~ 429 (512)
.+.+++.+++|||+
T Consensus 356 ~~~~~~~~~~r~~~ 369 (444)
T 3gia_A 356 LFVILSHYILIDEV 369 (444)
T ss_dssp HHHHHHHHHTHHHH
T ss_pred HHHHHHHHHhhhcC
Confidence 99999998887654
No 4
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A
Probab=99.07 E-value=2.1e-06 Score=88.44 Aligned_cols=291 Identities=13% Similarity=0.017 Sum_probs=147.8
Q ss_pred cccccchHHHHHHHHHHhhhhhhHHHHHHhhhhcCCch--hHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChhhHHHhhc
Q 010352 17 LRREMTLFKTFAISFSTMTLFTGIIPLYGSSLLYAGPA--SLVWGWVVVSFFTWFVGLAMAEICSSFPTTGSLYFWAAHL 94 (512)
Q Consensus 17 l~r~l~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~G~~--~~~~~~ii~~l~~~~~a~~~~el~~~~p~~GG~y~~~~~~ 94 (512)
.+|+.++++.+.+=++....... +........ |-. .++++.+++.++........+..+.++-.+ .....+..
T Consensus 23 ~~R~~~~~~~~~~W~g~~~~i~~-~~~Ga~~~~--GLs~~~a~lai~lG~li~~~~~~l~~~~G~~~Gl~--~~v~~R~~ 97 (501)
T 2jln_A 23 AERSVGPFSLAAIWFAMAIQVAI-FIAAGQMTS--SFQVWQVIVAIAAGCTIAVILLFFTQSAAIRWGIN--FTVAARMP 97 (501)
T ss_dssp GGCCBCHHHHHHHHHHHHCSTHH-HHHHHHHTT--TSCHHHHHHHHHHHHHHHHHHHHHHTHHHHHHCCC--HHHHTTTT
T ss_pred hhCCCCHHHHHHHHHHHHHHHHH-HHHHHHHhc--CcCHHHHHHHHHHHHHHHHHHHHHHhHHHhhcCCC--hhhhhHhh
Confidence 45778999999888887765333 333322222 432 144444444444333333344444444222 55577777
Q ss_pred cCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccCchHHHHHHHHHHHHHHHHHHhchhhH
Q 010352 95 ASPKWGPFASWCCAWLETIGLIAGMGTQAYAGSQTLQSIILLCTGTNKDGGYFAPKWLFLCMYIGLTIIWAVLNTFALEV 174 (512)
Q Consensus 95 ~g~~~g~~~g~~~g~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~k~ 174 (512)
+|++ .+.+......+..+...+......++.+...+.... +. ++.+... +++.++...+.++|.|.
T Consensus 98 FG~~----Gs~i~~ll~~i~~igw~~v~~~~gg~al~~~~~~~~------g~-~~~~v~~---~i~~~l~~~~~~~G~~~ 163 (501)
T 2jln_A 98 FGIR----GSLIPITLKALLSLFWFGFQTWLGALALDEITRLLT------GF-TNLPLWI---VIFGAIQVVTTFYGITF 163 (501)
T ss_dssp SCTT----TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------CC-CCHHHHH---HHHHHHHHHHHTTHHHH
T ss_pred cchh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc------Cc-chHHHHH---HHHHHHHHHHHHhCHHH
Confidence 5554 455666666666666666666667777666553211 11 1222222 23344566777999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhccccccccccccccccccCCCCCCCchhHHHHhhhhh-hhhhccccccchhhhh
Q 010352 175 IAFIDIISMWWQVAGGLVIIIMLPLVALTTQSASYVFTHFEMSPEATGISSKPYAVILSFLVS-QYSLYGYDSAAHLTEE 253 (512)
Q Consensus 175 ~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~f~G~e~~~~~~~E 253 (512)
..+++.+...+.++.++.+.+..+...+. ...+ ..+ . . ..... .+++.++... .+...+.-..+.++.+
T Consensus 164 i~~~~~~~~p~~~i~~i~~~~~~l~~~g~-~~~~-~~~-~-~--~~~~~----~~f~~ai~~~~~~~~~~~~~~~DysRy 233 (501)
T 2jln_A 164 IRWMNVFASPVLLAMGVYMVYLMLDGADV-SLGE-VMS-M-G--GENPG----MPFSTAIMIFVGGWIAVVVSIHDIVKE 233 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTC-CHHH-HTT-C-C--CSSCC----SCHHHHHHHHHTTTHHHHTTTHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCC-cchh-hhc-c-C--Cccch----HHHHHHHHHHHHHHHHHHhccCccccc
Confidence 99999988888777777666666554321 0000 011 1 0 11111 2254444331 2222344557889999
Q ss_pred ccCcccc-----------cchHHHHHHHHHHHHHHHHHHHHHHhccChhhhhcCCCcccCCCcHHHHHHHHhhcccCCcc
Q 010352 254 TKGADKT-----------GPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNETAGAFVPAQILYDAFHGRYHNST 322 (512)
Q Consensus 254 ~k~P~k~-----------ip~ai~~~~~~~~i~y~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 322 (512)
.|++++. .-++..++..+...+..+........ ... .+|. ..+...+. ++..
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~g~~lG~~i~~~~~~~lG~~~~~~-------~~~------~dp~-~~l~~~l~---~~~~ 296 (501)
T 2jln_A 234 CKVDPNASREGQTKADARYATAQWLGMVPASIIFGFIGAASMVL-------VGE------WNPV-IAITEVVG---GVSI 296 (501)
T ss_dssp BCCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HSC------SCHH-HHHHHHHT---CCCH
T ss_pred CCCCccccccchhhccchHHHHHHHHHHHHHHHHHHHHHHHHHh-------ccc------cCHH-HHHHHHhc---cchH
Confidence 9886541 33333344443333322222211111 111 1232 33333221 2221
Q ss_pred hhHHHH-HHHHHHHHHhHHH-HHhhhhhhHHhh
Q 010352 323 GAIILL-IVIWGSFFFGGLS-VTTSAARVVYAL 353 (512)
Q Consensus 323 ~~~~~~-~~~~~~~~~~~~~-~~~~~sR~l~~m 353 (512)
...+.. +.++++.+++... .+++.+--+..+
T Consensus 297 ~~~~~~~~~~~la~i~tn~~~n~ys~~~~l~~~ 329 (501)
T 2jln_A 297 PMAILFQVFVLLATWSTNPAANLLSPAYTLCST 329 (501)
T ss_dssp HHHHHHHHHHHHHHHTTHHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHh
Confidence 255666 6677777777663 677777666554
No 5
>2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane protein, transport protein; HET: BOG; 1.65A {Aquifex aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A* 2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A* 3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A* 3uso_A 3usp_A* 3qs5_A* ...
Probab=98.41 E-value=0.00014 Score=74.33 Aligned_cols=124 Identities=11% Similarity=0.087 Sum_probs=75.7
Q ss_pred HHHHHHHHHHHHHHHHHHhchh-hHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccccccccccccCCCCCCCchhH
Q 010352 151 WLFLCMYIGLTIIWAVLNTFAL-EVIAFIDIISMWWQVAGGLVIIIMLPLVALTTQSASYVFTHFEMSPEATGISSKPYA 229 (512)
Q Consensus 151 ~~~~~i~~~~~~~~~~~~~~g~-k~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (512)
|...+.-+++.++...+..+|+ |-.+|+..+++..-.+.++++.+-++...+...+.....+-+ ..|+-+...+ ...
T Consensus 166 ~~~~~~~~~~w~i~~~ii~~Gv~kgiek~~~~~mp~l~vlliiL~ir~ltLpGp~~~A~~Gl~~~-~~Pd~s~L~~-~~v 243 (519)
T 2a65_A 166 LFAYIVFLITMFINVSILIRGISKGIERFAKIAMPTLFILAVFLVIRVFLLETPNGTAADGLNFL-WTPDFEKLKD-PGV 243 (519)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCTTTTHHHHHHHHHHHHHHHHHHHHHHHTTCEETTEEHHHHHHHH-HSCCTTSTTC-HHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHH-hcCCHHHhCC-HHH
Confidence 4444444455556778888999 678999988877766666666665554422000011011111 1123333322 345
Q ss_pred HHHhhhhhhhhh-ccccccchhhhhccCcccccchHHHHHHHHHHHHHH
Q 010352 230 VILSFLVSQYSL-YGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGW 277 (512)
Q Consensus 230 ~~~~~~~~~~~f-~G~e~~~~~~~E~k~P~k~ip~ai~~~~~~~~i~y~ 277 (512)
+..+...++|++ .|+-....++.-.|+ +.|++|........-...-+
T Consensus 244 w~~A~gQ~FFSLslG~G~~ity~SY~~~-~~n~~~~a~~v~~~n~~~sl 291 (519)
T 2a65_A 244 WIAAVGQIFFTLSLGFGAIITYASYVRK-DQDIVLSGLTAATLNEKAEV 291 (519)
T ss_dssp HHHHHHHHHHHHTTTSSHHHHHHTTSCT-TSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHhHHhhhhcccCC-CcChHhhHHHHHHHHHHHHH
Confidence 778888888988 688888888888877 67888877666665544444
No 6
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus}
Probab=98.36 E-value=0.00069 Score=70.19 Aligned_cols=110 Identities=15% Similarity=0.118 Sum_probs=54.9
Q ss_pred ccccchHHHHHHHHHHhhhhhhHHHHHHhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChhhHHHhhccCC
Q 010352 18 RREMTLFKTFAISFSTMTLFTGIIPLYGSSLLYAGPASLVWGWVVVSFFTWFVGLAMAEICSSFPTTGSLYFWAAHLASP 97 (512)
Q Consensus 18 ~r~l~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~G~~~~~~~~ii~~l~~~~~a~~~~el~~~~p~~GG~y~~~~~~~g~ 97 (512)
.|+++++.......++..+...+...++.++. .|.....+.|.. .+.....+..+...-++. +.-..++|.++-+|+
T Consensus 19 GR~l~~~~~~~s~~at~~Sa~~~lG~~g~~y~-~G~~~~~~~~~~-~~~~~i~~~~~~p~~~~~-~~~T~~e~l~~Rfg~ 95 (530)
T 3dh4_A 19 GKSLPWWAVGASLIAANISAEQFIGMSGSGYS-IGLAIASYEWMS-AITLIIVGKYFLPIFIEK-GIYTIPEFVEKRFNK 95 (530)
T ss_dssp CSCCCHHHHHHHHHHHHCSHHHHTHHHHHHHH-TCGGGHHHHHHH-HHHHHHHHHHTHHHHHHT-TCCSHHHHHHHHTCH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-hChHHHHHHHHH-HHHHHHHHHHHHHHHHHc-CCccHHHHHHHHcCc
Confidence 58899987776666666652333333444433 454423333332 222233344444444443 445788888887554
Q ss_pred CCCchhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Q 010352 98 KWGPFASWCCAWLETIGLI-AGMGTQAYAGSQTLQSII 134 (512)
Q Consensus 98 ~~g~~~g~~~g~~~~~~~~-~~~a~~~~~~~~~~~~~~ 134 (512)
+ ...+.+....+.+. ...+...+..+..++.++
T Consensus 96 ~----~~~~~a~~~l~~~~~~~~~~~l~~~~~~~~~~~ 129 (530)
T 3dh4_A 96 K----LKTILAVFWISLYIFVNLTSVLYLGGLALETIL 129 (530)
T ss_dssp H----HHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHT
T ss_pred H----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4 44455544433332 233444444455555543
No 7
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A
Probab=98.02 E-value=0.0043 Score=65.10 Aligned_cols=300 Identities=14% Similarity=0.091 Sum_probs=126.4
Q ss_pred ccccchHHHHHHHHHHhhhhhhHHHHHHhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChhhHHHhhccCC
Q 010352 18 RREMTLFKTFAISFSTMTLFTGIIPLYGSSLLYAGPASLVWGWVVVSFFTWFVGLAMAEICSSFPTTGSLYFWAAHLASP 97 (512)
Q Consensus 18 ~r~l~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~G~~~~~~~~ii~~l~~~~~a~~~~el~~~~p~~GG~y~~~~~~~g~ 97 (512)
.|+++++....-..++..+.......++.++. .|-....+.|. ..+.....++.+...-++. +.-..++|.++=+|
T Consensus 48 GR~l~~~~~~~Sl~at~~sa~t~lG~~g~~y~-~G~~~~~~~~~-~~~~~~~~~~~~~p~~~r~-~~~T~~e~l~~Rfg- 123 (593)
T 2xq2_A 48 GKSLPWWAVGASLIAANISAEQFIGMSGSGYS-IGLAIASYEWM-SAITLIIVGKYFLPIFIEK-GIYTIPEFVEKRFN- 123 (593)
T ss_dssp ---CCHHHHHHHHHGGGSSHHHHHHHHHHHHH-TCGGGGHHHHH-HHHHHHHHHHTHHHHHHHT-TCCSHHHHHHHHTC-
T ss_pred CCCCCHHHHHHHHHHHHhcHHHHhhHhHHHHH-cCHHHHHHHHH-HHHHHHHHHHHHHHHHHhC-CCCCcHHHHHHHcc-
Confidence 47888876555544555542333344444444 45432333332 2222333444444444443 44578888887744
Q ss_pred CCCchhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccCchHHHHHHHHHHHHHHHHHHhchhhHHH
Q 010352 98 KWGPFASWCCAWLETIGL-IAGMGTQAYAGSQTLQSIILLCTGTNKDGGYFAPKWLFLCMYIGLTIIWAVLNTFALEVIA 176 (512)
Q Consensus 98 ~~g~~~g~~~g~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~k~~~ 176 (512)
+....+.+....+.+ ....+......+..++.+++ .+.+...++..++ .......-|.|...
T Consensus 124 ---~~~~~~~ai~~l~~~~~~~~~~~l~~~~~~l~~~~G------------i~~~~~i~i~~~i--~~~Yt~~GGl~av~ 186 (593)
T 2xq2_A 124 ---KKLKTILAVFWISLYIFVNLTSVLYLGGLALETILG------------IPLMYSILGLALF--ALVYSIYGGLSAVV 186 (593)
T ss_dssp ---HHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHC------------CCHHHHHHHHHHH--HHHHHHTTC---CC
T ss_pred ---CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC------------ccHHHHHHHHHHH--HHHHHHhcchHHHH
Confidence 434445544443332 23344455555666666542 1333333322222 22333445666544
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhcccccc---------c--cccccccccccCC-CCCCC-chhHHHHh-hhhhhhhhc
Q 010352 177 FIDIISMWWQVAGGLVIIIMLPLVALTTQS---------A--SYVFTHFEMSPEA-TGISS-KPYAVILS-FLVSQYSLY 242 (512)
Q Consensus 177 ~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~---------~--~~~~~~~~~~~~~-~~~~~-~~~~~~~~-~~~~~~~f~ 242 (512)
+...+=..++++..++..+..+...++... . +..++.+ . |+. ..+.. .......+ .......+.
T Consensus 187 ~TD~iQ~iiml~~~l~v~~~~l~~~gg~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 264 (593)
T 2xq2_A 187 WTDVIQVFFLVLGGFMTTYMAVSFIGGTDGWFAGVSKMVDAAPGHFEMI-L-DQSNPQYMNLPGIAVLIGGLWVANLYYW 264 (593)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHGGGHHHHHHHHHHHHCGGGSCSS-C-CSSSGGGGTSCTTHHHHSTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHhhChhhcccc-c-CCCCcccccchHHHHHHHHHHHHHHHhh
Confidence 444333444444444443333332211000 0 0001111 0 000 00000 01112211 212223455
Q ss_pred cccc-cchhhhhccCcccccchHHHHHHHHHHHHHHHHH---HHHHHhccChh---h--------hhcCCCcccCCCcHH
Q 010352 243 GYDS-AAHLTEETKGADKTGPIAILSSIGIISIFGWALI---LALCFSIQDFS---Y--------LYDKSNETAGAFVPA 307 (512)
Q Consensus 243 G~e~-~~~~~~E~k~P~k~ip~ai~~~~~~~~i~y~~~~---~~~~~~~~~~~---~--------l~~~~~~~~~~~~~~ 307 (512)
|.+. ..+-.=+.||+ |+..|+..++.....++.++.. +.......+.. . .-+..+ .+
T Consensus 265 ~~~q~~~qR~laaks~-k~ar~~~~~~~~~~~~~~~~~~~~Gl~a~~~~~~~~~~~~~~~~~~~~~p~~~~----~d--- 336 (593)
T 2xq2_A 265 GFNQYIIQRTLAAKSV-SEAQKGIVFAAFLALIVPFLVVLPGIAAYVITSDPQLMASLGDIAATNLPSAAN----AD--- 336 (593)
T ss_dssp TTTCSHHHHHHTTSCH-HHHHHHHHHHHHHTTTHHHHHTHHHHHHHHHHTCHHHHHHHC-----CCCCSTB----GG---
T ss_pred cCChHHHHHhheeCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccCCCCCC----hh---
Confidence 5543 45556678885 6788888877766444443221 11111100100 0 000001 11
Q ss_pred HHHHHHhhcccCCcchhHHHHHHHHHHHHHhHHHHHhhhhhhH
Q 010352 308 QILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVV 350 (512)
Q Consensus 308 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l 350 (512)
..+.... +. -+++..-++..+++.+..++..+.+.+.+-.+
T Consensus 337 ~~~p~l~-~~-lp~~l~gl~~a~llaA~mST~~s~l~a~st~~ 377 (593)
T 2xq2_A 337 KAYPWLT-QF-LPVGVKGVVFAALAAAIVSSLASMLNSTATIF 377 (593)
T ss_dssp GHHHHHH-HT-SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHH-HH-cChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1122222 22 44556667777777788888888887777654
No 8
>2wsw_A BCCT family betaine/carnitine/choline transporter; transport protein, SD methionine, membrane protein; HET: CM5 1PE; 2.29A {Proteus mirabilis} PDB: 2wsx_A* 3hfx_A*
Probab=92.08 E-value=11 Score=37.94 Aligned_cols=94 Identities=9% Similarity=-0.113 Sum_probs=52.2
Q ss_pred hhHHHHHHHHHHHHHhHHHHHhhhhhhHHhhhcCCCCCccccccccc-ccCCchHHHHHHHHHHHHHHhccccccHHHHH
Q 010352 323 GAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQLH-PKHKVPSNAVWLCAAICIILGLPILKVNVVFT 401 (512)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~ma~d~~lP~~~~f~~~~-~~~~~P~~a~~~~~~i~~~~~~~~~~~~~~~~ 401 (512)
...++....++..+.-..+..-+.+-++-.++.+|.-+ + .+ ||...=.|+++.. +++.++++ .+..+..+
T Consensus 408 ~~~i~~~l~iil~~~FfvTSaDS~s~vi~~~ss~g~~~--~----~~p~~~~rifW~v~~g-~va~~LL~--~ggl~aLQ 478 (509)
T 2wsw_A 408 LSTATMWGFFILCFIATVTLINACSYTLAMSTCRSMKE--G----ADPPLLVRIGWSVLVG-IIGIILLA--LGGLKPIQ 478 (509)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHBCCCCT--T----CCCCHHHHHHHHHHHH-HHHHHHHH--HCSSHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHcCCCCC--C----CCCChhHHHHHHHHHH-HHHHHHHH--hccHHHHH
Confidence 44455555555555556666777777887777766322 1 11 1222223444332 33333322 23456777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q 010352 402 AITSICTIGWVGGYAVPIFARMVM 425 (512)
Q Consensus 402 ~l~~~~~~~~~~~~~l~~~~~~~~ 425 (512)
...-++.+...+...+.+.+.++.
T Consensus 479 ~~~ii~alPf~~v~l~~~~sl~k~ 502 (509)
T 2wsw_A 479 TAIIAGGCPLFFVNIMVTLSFIKD 502 (509)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHH
Confidence 777778888777777777766654
No 9
>4ain_A Glycine betaine transporter BETP; membrane protein, chemosensor and osmosensor, secondary TRAN sodium coupled transport; HET: FLC CM5; 3.10A {Corynebacterium glutamicum} PDB: 4doj_A* 2w8a_A 2wit_A 3p03_A
Probab=91.33 E-value=14 Score=37.51 Aligned_cols=91 Identities=19% Similarity=0.043 Sum_probs=46.5
Q ss_pred hhHHHHHHHHHHHHHhHHHHHhhhhhhHHhhhcCCCC-CcccccccccccCCchHHHHHHHHHHHHHHhcccccc---HH
Q 010352 323 GAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGI-PFSSIWRQLHPKHKVPSNAVWLCAAICIILGLPILKV---NV 398 (512)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~ma~d~~l-P~~~~f~~~~~~~~~P~~a~~~~~~i~~~~~~~~~~~---~~ 398 (512)
+..++....++..+.-..+..-+.+-++-.++.+|.. | + |...=.|+++. ++++.++++ .+. .+
T Consensus 409 ~~~i~~~l~iili~~FfvTSaDS~s~vl~~~ss~g~~~p--~-------~~~rifWgv~~-g~va~~LL~--~GG~~~L~ 476 (539)
T 4ain_A 409 GGQIMGIIAMILLGTFFITSADSASTVMGTMSQHGQLEA--N-------KWVTAAWGVAT-AAIGLTLLL--SGGDNALS 476 (539)
T ss_dssp THHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHTTTCSSC--C-------HHHHHHHHHHH-HHHHHHHTT--C-----CH
T ss_pred hHHHHHHHHHHHHHHHHHHccchHHHHHHHHHcCCCCCC--C-------cchhhHHHHHH-HHHHHHHHH--hCCHHHHH
Confidence 3444444444444444555556666666666654432 3 1 22222333332 233333322 333 45
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 010352 399 VFTAITSICTIGWVGGYAVPIFARMVM 425 (512)
Q Consensus 399 ~~~~l~~~~~~~~~~~~~l~~~~~~~~ 425 (512)
..+...-++.+...+...+.+.+.++-
T Consensus 477 aLQt~~ii~alPf~~v~llm~~sl~k~ 503 (539)
T 4ain_A 477 NLQNVTIVAATPFLFVVIGLMFALVKD 503 (539)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHhhHHHHHhHHHHHHHHHHHHHHHH
Confidence 677777777777777766677776655
No 10
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=40.94 E-value=19 Score=22.72 Aligned_cols=6 Identities=17% Similarity=-0.230 Sum_probs=2.2
Q ss_pred Hhhhhe
Q 010352 486 IMLWWL 491 (512)
Q Consensus 486 ~~~~~~ 491 (512)
.+++|+
T Consensus 28 ~~~~~~ 33 (44)
T 2ks1_B 28 ALGIGL 33 (44)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 11
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=35.86 E-value=16 Score=23.08 Aligned_cols=6 Identities=0% Similarity=0.058 Sum_probs=2.2
Q ss_pred heeecc
Q 010352 490 WLLDAR 495 (512)
Q Consensus 490 ~~~~~~ 495 (512)
+++++|
T Consensus 32 ~~~RRR 37 (44)
T 2l2t_A 32 VYVRRK 37 (44)
T ss_dssp HHHHTT
T ss_pred HHhhhh
Confidence 333333
No 12
>3j1z_P YIIP, cation efflux family protein; zinc transporter, secondary transporter, alternating access mechanism, metal transport; 13.00A {Shewanella oneidensis}
Probab=30.78 E-value=76 Score=29.48 Aligned_cols=28 Identities=18% Similarity=-0.002 Sum_probs=15.1
Q ss_pred HHHHhhcccCccCCCcccCCchhhHHHH
Q 010352 420 FARMVMAEQKFNAGPFYLGKASRPICLI 447 (512)
Q Consensus 420 ~~~~~~r~~~~~~~~~~~~~~~~~~~~~ 447 (512)
++...-+|+++++.||-..|.....+++
T Consensus 60 ~~~~~s~k~~d~~~pyG~~R~E~l~al~ 87 (306)
T 3j1z_P 60 IAIRYAIVPADHDHRYGHGKAEPLAALA 87 (306)
T ss_dssp HHHHHHTSCCCCTTSSCCTTHHHHHHHH
T ss_pred HHHHHhCCCCcccCCCchhhHHHHHHHH
Confidence 3344445666666777666544444433
No 13
>3h90_A Ferrous-iron efflux pump FIEF; membrane protein, zinc transporter, cell inner membrane, cell membrane, ION transport, iron transport; 2.90A {Escherichia coli k-12} PDB: 2qfi_A
Probab=23.61 E-value=1.7e+02 Score=26.58 Aligned_cols=30 Identities=17% Similarity=0.099 Sum_probs=16.3
Q ss_pred HHHHHhhcccCccCCCcccCCchhhHHHHH
Q 010352 419 IFARMVMAEQKFNAGPFYLGKASRPICLIA 448 (512)
Q Consensus 419 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~ 448 (512)
..+...-+|+++++.||-..|.....+.+.
T Consensus 50 l~~~~~s~~~~d~~~pyG~~r~E~l~~l~~ 79 (283)
T 3h90_A 50 LLVVRYSLQPADDNHSFGHGKAESLAALAQ 79 (283)
T ss_dssp HHHHHHHTCCCCSSCSSCSTTHHHHHHHHH
T ss_pred HHHHHHhcCCCCCCCCCcchHHHHHHHHHH
Confidence 333444455567777776665555544433
Done!