BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010353
(512 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|302143859|emb|CBI22720.3| unnamed protein product [Vitis vinifera]
Length = 524
Score = 679 bits (1752), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 337/528 (63%), Positives = 419/528 (79%), Gaps = 20/528 (3%)
Query: 1 MLTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQ 60
M T+YG + AVH+I++HFG+LVAKVC+CLLRKG LT +V R+TEL +QVK+ +LVLIQ
Sbjct: 1 MATQYGVQLAVHLISSHFGNLVAKVCDCLLRKGTLTLASVIRFTELPPQQVKSCILVLIQ 60
Query: 61 QNCVQAFTTEQPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGL 120
NCVQAF +Q GF + P+ TQY+ LF NILHR+RFAKFL I+S+E D++C E+++GL
Sbjct: 61 HNCVQAFAIQQEVGFGEAPRVVTQYMALFHNILHRMRFAKFLAIVSEELDKECEEILEGL 120
Query: 121 LEHGRLTLKQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEE 180
L+HGRLTL+Q+ DRAKS++ EG V D+LRE+ +KLV AH+VERCPASEP L P SEEE
Sbjct: 121 LQHGRLTLEQILDRAKSNQSEGEPVVQDALRESFLKLVRAHFVERCPASEPFLAPPSEEE 180
Query: 181 GPARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGE 240
PARK+G+KSAK + EP+TIEQ+ + AA PM+A RFSV+ N +DV +S NVT GE
Sbjct: 181 TPARKRGAKSAKLVEEPQTIEQRAIAAAAPMDAKRFSVIINTGTDV----DDSPNVTAGE 236
Query: 241 KRKHDVLELD-ECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQ 299
KRK D LELD E G + E+ V++RANFE F+R LRHK CI +V+ LDDGAA VLSAML+
Sbjct: 237 KRKQDALELDKETGASCEKDVLWRANFEEFVRCLRHKACIANVKTRLDDGAAIVLSAMLE 296
Query: 300 ATSSAEKKVKTKNSVPLSLSSIYEEVIKSEAGRNMTLDHVRASLVQL------------- 346
AT S EKKVKT+NSVPLS+ +I+E V+KSEAGR+MTL+ VR SL+QL
Sbjct: 297 ATRSEEKKVKTENSVPLSMDTIFEGVMKSEAGRSMTLERVRGSLIQLGCAPCVRGAAESY 356
Query: 347 --DFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPK 404
D + IIE+AQN+EVES+ KRYGRDAYRIFRLLSKS RLLETDKISDTTFVEKKD K
Sbjct: 357 SVDLKNIIELAQNDEVESITLKRYGRDAYRIFRLLSKSCRLLETDKISDTTFVEKKDTAK 416
Query: 405 ILYKLWKDGYLLMEKLVVTGARQSQFLLWKVNRQILWKHVLDEMFHAALNLSLRVSYELD 464
ILY+LWKD YL MEKL + G+RQSQFLLWKV + LW HVL+EM+H+ALNLSLRV+YEL+
Sbjct: 417 ILYQLWKDEYLQMEKLNLHGSRQSQFLLWKVTKDTLWGHVLNEMYHSALNLSLRVAYELE 476
Query: 465 REKELLNLPADKRTGPLQDRYNRIRKVRILLESSQMKLDDAILLFHDF 512
+E+E++ LP +KR G L +R+ R+RKVRILLESS MKLDDAI+LF+DF
Sbjct: 477 QEQEIIQLPREKRVGALGNRFERLRKVRILLESSLMKLDDAIMLFNDF 524
>gi|359490507|ref|XP_002267664.2| PREDICTED: DNA-directed RNA polymerase III subunit RPC3 [Vitis
vinifera]
Length = 511
Score = 647 bits (1669), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 328/528 (62%), Positives = 412/528 (78%), Gaps = 33/528 (6%)
Query: 1 MLTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQ 60
M T+YG + AVH+I++HFG+LVAKVC+CLLRKG LT +V R+TEL +QVK+ +LVLIQ
Sbjct: 1 MATQYGVQLAVHLISSHFGNLVAKVCDCLLRKGTLTLASVIRFTELPPQQVKSCILVLIQ 60
Query: 61 QNCVQAFTTEQPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGL 120
NCVQAF +Q + P+ TQY+ LF NILHR+RFAKFL I+S+E D++C E+++GL
Sbjct: 61 HNCVQAFAIQQ-----EAPRVVTQYMALFHNILHRMRFAKFLAIVSEELDKECEEILEGL 115
Query: 121 LEHGRLTLKQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEE 180
L+HGRLTL+Q+ DRAKS+++E V D+LRE+ +KLV AH+VERCPASEP L P SEEE
Sbjct: 116 LQHGRLTLEQILDRAKSNQREP--VVQDALRESFLKLVRAHFVERCPASEPFLAPPSEEE 173
Query: 181 GPARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGE 240
PARK+G+KSAK + EP+TIEQ+ + AA PM+A RFSV+ N +DV + +P
Sbjct: 174 TPARKRGAKSAKLVEEPQTIEQRAIAAAAPMDAKRFSVIINTGTDVDD--------SPN- 224
Query: 241 KRKHDVLELD-ECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQ 299
RK D LELD E G + E+ V++RANFE F+R LRHK CI +V+ LDDGAA VLSAML+
Sbjct: 225 -RKQDALELDKETGASCEKDVLWRANFEEFVRCLRHKACIANVKTRLDDGAAIVLSAMLE 283
Query: 300 ATSSAEKKVKTKNSVPLSLSSIYEEVIKSEAGRNMTLDHVRASLVQL------------- 346
AT S EKKVKT+NSVPLS+ +I+E V+KSEAGR+MTL+ VR SL+QL
Sbjct: 284 ATRSEEKKVKTENSVPLSMDTIFEGVMKSEAGRSMTLERVRGSLIQLGCAPCVRGAAESY 343
Query: 347 --DFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPK 404
D + IIE+AQN+EVES+ KRYGRDAYRIFRLLSKS RLLETDKISDTTFVEKKD K
Sbjct: 344 SVDLKNIIELAQNDEVESITLKRYGRDAYRIFRLLSKSCRLLETDKISDTTFVEKKDTAK 403
Query: 405 ILYKLWKDGYLLMEKLVVTGARQSQFLLWKVNRQILWKHVLDEMFHAALNLSLRVSYELD 464
ILY+LWKD YL MEKL + G+RQSQFLLWKV + LW HVL+EM+H+ALNLSLRV+YEL+
Sbjct: 404 ILYQLWKDEYLQMEKLNLHGSRQSQFLLWKVTKDTLWGHVLNEMYHSALNLSLRVAYELE 463
Query: 465 REKELLNLPADKRTGPLQDRYNRIRKVRILLESSQMKLDDAILLFHDF 512
+E+E++ LP +KR G L +R+ R+RKVRILLESS MKLDDAI+LF+DF
Sbjct: 464 QEQEIIQLPREKRVGALGNRFERLRKVRILLESSLMKLDDAIMLFNDF 511
>gi|224134849|ref|XP_002321920.1| predicted protein [Populus trichocarpa]
gi|222868916|gb|EEF06047.1| predicted protein [Populus trichocarpa]
Length = 519
Score = 576 bits (1485), Expect = e-162, Method: Compositional matrix adjust.
Identities = 297/530 (56%), Positives = 391/530 (73%), Gaps = 30/530 (5%)
Query: 2 LTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQ 61
+++YG K+AVH+ITNHFG LVAKVC+CLL+KGPL + + RYTELS+ V+N LLVLIQ
Sbjct: 1 VSQYGIKYAVHIITNHFGPLVAKVCDCLLKKGPLPLREIVRYTELSETLVRNCLLVLIQH 60
Query: 62 NCVQAFTTEQPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLL 121
NC+Q F E+ GF + K ++ Y+VLFDN+LHRVRF+KF+ I+SQEFD+ CV+L++ LL
Sbjct: 61 NCLQPFLLEEEGGFGEVNKVSSLYMVLFDNVLHRVRFSKFMAIVSQEFDKLCVDLIETLL 120
Query: 122 EHGRLTLKQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLL-MPISEEE 180
+HGRL+ +Q+FD + G +++L+E + KLV A YVERCP SEP L +P EE
Sbjct: 121 QHGRLSSEQIFDGFRDRSSSGG---MEALQENMHKLVMARYVERCPISEPFLALPSEEEA 177
Query: 181 GPARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVG-EKEKNSNNVTPG 239
P R++G+KSAK EPET+EQ+V+ AA+P E MRFS N E +K +N+++ G
Sbjct: 178 APVRRRGAKSAKAFLEPETLEQRVLVAAVPPEGMRFSFELNPEIGADRDKVENNSSSNIG 237
Query: 240 EKRKHDVLELD-ECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAML 298
+KRK D LE D + GVAD+Q ++R NFE FIRRLRHK CI+ VR LDD AA V +AML
Sbjct: 238 DKRKLDALESDIDGGVADKQVALWRVNFEEFIRRLRHKICIETVRTRLDDEAATVFTAML 297
Query: 299 QATSSAEKKVKTKNSVPLSLSSIYEEVIKSEAGRNMTLDHVRASLVQL------------ 346
A+ S EKK+KT +SVPLS +SIY EVIKSE GRNMTLD+V + LV L
Sbjct: 298 DASRSEEKKIKTASSVPLSENSIYAEVIKSEKGRNMTLDYVISVLVGLSSSPPFVRVVDN 357
Query: 347 ----DFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDA 402
DF+ IE+AQ + ES+V K+YG+DAYR+FRLLSK+GRLLETDKISD+ F+EKK+
Sbjct: 358 SYSIDFKHTIEVAQTD--ESIVYKKYGKDAYRMFRLLSKAGRLLETDKISDSIFLEKKET 415
Query: 403 PKILYKLWKDGYLLMEKLVVTGARQSQFLLWKVNRQILWKHVLDEMFHAALNLSLRVSYE 462
IL K+W+ YL MEKL+ A +QFLLWKVN L + VLD+MFHAALNLSLRV+YE
Sbjct: 416 ANILSKMWQGDYLQMEKLI---AGPTQFLLWKVNMINLRERVLDDMFHAALNLSLRVAYE 472
Query: 463 LDREKELLNLPADKRTGPLQDRYNRIRKVRILLESSQMKLDDAILLFHDF 512
L+++KE+L+L D GP++++Y +++KVR LLESS+MKLDDAI++FHDF
Sbjct: 473 LEQQKEILHLGVD---GPMKEKYEKLKKVRFLLESSRMKLDDAIMIFHDF 519
>gi|255539431|ref|XP_002510780.1| DNA-directed RNA polymerase III 62 kDa polypeptide, putative
[Ricinus communis]
gi|223549895|gb|EEF51382.1| DNA-directed RNA polymerase III 62 kDa polypeptide, putative
[Ricinus communis]
Length = 485
Score = 561 bits (1446), Expect = e-157, Method: Compositional matrix adjust.
Identities = 289/484 (59%), Positives = 362/484 (74%), Gaps = 43/484 (8%)
Query: 3 TEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQN 62
T++G K+A H+ITNHFG+LVAKVC+CLLRKGPLT Q V +TEL+ QVKN+LLVLIQ N
Sbjct: 4 TQHGIKYATHIITNHFGNLVAKVCQCLLRKGPLTVQKVVEFTELNQTQVKNSLLVLIQHN 63
Query: 63 CVQAFTTEQPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLE 122
CVQA+ + D K T Y+ LFDNILHRVRF+KFL I+SQ+F + CV++V+GLLE
Sbjct: 64 CVQAYRS------GDDLKLTTHYIALFDNILHRVRFSKFLAIISQDFHKSCVDIVEGLLE 117
Query: 123 HGRLTLKQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEGP 182
HGRLT+KQ+ DRA S N + LDS++E L KLV Y+E CPASEP+L P +EEE
Sbjct: 118 HGRLTVKQIVDRANSR----NSIGLDSVKENLCKLVNGRYIEHCPASEPVLAPPTEEEDR 173
Query: 183 ARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVE-SDVGEKEKN-SNNVTPGE 240
A+K+ +KSAK + E ET+EQ+V+ A+PM+A RFSV + E D E ++N S++ G+
Sbjct: 174 AKKRSAKSAKIVIESETLEQRVLAVAVPMDAKRFSVDLDTELKDDAENDQNKSSDKHVGD 233
Query: 241 KRKHDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQA 300
K VA++Q V++RANFE FIRRLRHK CI++VR LDDGAA VLSAML A
Sbjct: 234 K------------VAEDQVVLWRANFEEFIRRLRHKACIENVRGRLDDGAAIVLSAMLDA 281
Query: 301 TSSAEKKVKTKNSVPLSLSSIYEEVIKSEAGRNMTLDHVRASLVQL-------------- 346
+ + EKKVKT +SVPLSL+SIYEEVIK+E GRNMT+DH+ ++L QL
Sbjct: 282 SRTEEKKVKTASSVPLSLNSIYEEVIKNENGRNMTIDHIESALGQLGSPPPFVKAVEDLY 341
Query: 347 --DFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPK 404
DF+ IIE AQ++EVES+V KRYGRDAYRIFRLLSK+ RLLETDKISDT FVEKK+ K
Sbjct: 342 TIDFKHIIEAAQSDEVESIVLKRYGRDAYRIFRLLSKASRLLETDKISDTIFVEKKETTK 401
Query: 405 ILYKLWKDGYLLMEKLVVTGARQSQFLLWKVNRQILWKHVLDEMFHAALNLSLRVSYELD 464
ILYK+W+D YLLMEKLV A + FLLWKVN+ LWK VLDEMFHA+LNLS+RV+YEL+
Sbjct: 402 ILYKMWQDDYLLMEKLV---AGTATFLLWKVNKHTLWKQVLDEMFHASLNLSIRVAYELE 458
Query: 465 REKE 468
++KE
Sbjct: 459 QQKE 462
>gi|449446151|ref|XP_004140835.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC3-like
[Cucumis sativus]
Length = 518
Score = 556 bits (1432), Expect = e-155, Method: Compositional matrix adjust.
Identities = 286/531 (53%), Positives = 387/531 (72%), Gaps = 33/531 (6%)
Query: 1 MLTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQ 60
++T+YG K+AVH++T HFG+LVAKVCE LLRKGPLT + + R+TEL+ QV N+LL+LIQ
Sbjct: 2 VMTQYGIKYAVHIMTAHFGNLVAKVCETLLRKGPLTLRLLIRFTELTPSQVNNSLLILIQ 61
Query: 61 QNCVQAFTTEQPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEF--DQQCVELVQ 118
NCVQAFT F D PK +T Y+ LF NILHR+RF+KF+ I SQ+ D+ C EL++
Sbjct: 62 HNCVQAFT-----DFGDAPKDDTLYLALFSNILHRMRFSKFVAIASQKLGQDKNCQELLE 116
Query: 119 GLLEHGRLTLKQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISE 178
GLL++GRL+++Q+ +RA+S + D + ++L KL+ AH+VERCPA EP L P
Sbjct: 117 GLLQNGRLSMEQLVERAESRNHPIS----DVVHDSLFKLLNAHFVERCPAPEPTLSP-KV 171
Query: 179 EEGPARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVV-TNVESDVGEKEKNSNNVT 237
EE P RK+G+K+AK PET+EQ+++EAA P+E +RFS+ TN E+ EK ++ + ++
Sbjct: 172 EEPPPRKRGAKAAKISEVPETLEQRLIEAARPVEVLRFSMGDTNPEA---EKSEHHSQIS 228
Query: 238 PGEKRKHDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAM 297
G+KRKHD LE+ + + +++RAN++ FIR LRHK CI+HVR+ DDG NVLSA+
Sbjct: 229 -GQKRKHDDLEIAQDSGDADGPILWRANYDEFIRCLRHKACIEHVRSQFDDGVVNVLSAI 287
Query: 298 LQATSSAEKKVKTKNSVPLSLSSIYEEVIKSEAGRNMTLDHVRASLVQL----------- 346
L+AT S+EK VKT+ +VPLSL +IYEEV+K+E GR+MTLD V ASL L
Sbjct: 288 LEATRSSEKIVKTEITVPLSLDNIYEEVMKNEVGRSMTLDRVEASLAALGCPGMDDYKIS 347
Query: 347 -----DFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKD 401
DF IIE AQ +EVES+V KRYGRDAYR+FR LSK+G L+ET+KISD++FV+K +
Sbjct: 348 MFTTVDFSMIIEQAQTDEVESIVLKRYGRDAYRMFRFLSKTGGLVETEKISDSSFVDKNE 407
Query: 402 APKILYKLWKDGYLLMEKLVVTGARQSQFLLWKVNRQILWKHVLDEMFHAALNLSLRVSY 461
APKILY+LWKD YL MEK+ +T R S LLW+V+R LW+HVLDEM+HA+LNL LR+++
Sbjct: 408 APKILYRLWKDEYLYMEKVALTVPRHSLCLLWRVDRYNLWEHVLDEMYHASLNLQLRLAH 467
Query: 462 ELDREKELLNLPADKRTGPLQDRYNRIRKVRILLESSQMKLDDAILLFHDF 512
E++ KELL+LP D PL + + VR LL SS +KLDDA++LFHDF
Sbjct: 468 EIEENKELLSLPKDNNNKPLVKKMHHFENVRNLLRSSLVKLDDALMLFHDF 518
>gi|449522480|ref|XP_004168254.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC3-like
[Cucumis sativus]
Length = 518
Score = 552 bits (1423), Expect = e-154, Method: Compositional matrix adjust.
Identities = 285/531 (53%), Positives = 386/531 (72%), Gaps = 33/531 (6%)
Query: 1 MLTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQ 60
++T+YG K+AVH++T HFG+LVAKVCE LLRKGPLT + + R+TEL+ QV N+LL+LIQ
Sbjct: 2 VMTQYGIKYAVHIMTAHFGNLVAKVCETLLRKGPLTLRLLIRFTELTPSQVNNSLLILIQ 61
Query: 61 QNCVQAFTTEQPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEF--DQQCVELVQ 118
NCVQAFT F D K +T Y+ LF NILHR+RF+KF+ I SQ+ D+ C EL++
Sbjct: 62 HNCVQAFT-----DFGDASKDDTLYLALFSNILHRMRFSKFVAIASQKLGQDKNCQELLE 116
Query: 119 GLLEHGRLTLKQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISE 178
GLL++GRL+++Q+ +RA+S + D + ++L KL+ AH+VERCPA EP L P
Sbjct: 117 GLLQNGRLSMEQLVERAESRNHPIS----DVVHDSLFKLLNAHFVERCPAPEPTLSP-KV 171
Query: 179 EEGPARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVV-TNVESDVGEKEKNSNNVT 237
EE P RK+G+K+AK PET+EQ+++EAA P+E +RFS+ TN E+ EK ++ + ++
Sbjct: 172 EEPPPRKRGAKAAKISEVPETLEQRLIEAARPVEVLRFSMGDTNPEA---EKSEHHSQIS 228
Query: 238 PGEKRKHDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAM 297
G+KRKHD LE+ + + +++RAN++ FIR LRHK CI+HVR+ DDG NVLSA+
Sbjct: 229 -GQKRKHDDLEIAQDSGDADGPILWRANYDEFIRCLRHKACIEHVRSQFDDGVVNVLSAI 287
Query: 298 LQATSSAEKKVKTKNSVPLSLSSIYEEVIKSEAGRNMTLDHVRASLVQL----------- 346
L+AT S+EK VKT+ +VPLSL +IYEEV+K+E GR+MTLD V ASL L
Sbjct: 288 LEATRSSEKIVKTEITVPLSLDNIYEEVMKNEVGRSMTLDRVEASLAALGCPGIDDYKIS 347
Query: 347 -----DFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKD 401
DF IIE AQ +EVES+V KRYGRDAYR+FR LSK+G L+ET+KISD++FV+K +
Sbjct: 348 MFTTVDFSMIIEQAQTDEVESIVLKRYGRDAYRMFRFLSKTGGLVETEKISDSSFVDKNE 407
Query: 402 APKILYKLWKDGYLLMEKLVVTGARQSQFLLWKVNRQILWKHVLDEMFHAALNLSLRVSY 461
APKILY+LWKD YL MEK+ +T R S LLW+V+R LW+HVLDEM+HA+LNL LR+++
Sbjct: 408 APKILYRLWKDEYLYMEKVALTVPRHSLCLLWRVDRYNLWEHVLDEMYHASLNLQLRLAH 467
Query: 462 ELDREKELLNLPADKRTGPLQDRYNRIRKVRILLESSQMKLDDAILLFHDF 512
E++ KELL+LP D PL + + VR LL SS +KLDDA++LFHDF
Sbjct: 468 EIEENKELLSLPKDNNNKPLVKKMHHFENVRNLLRSSLVKLDDALMLFHDF 518
>gi|356534135|ref|XP_003535613.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC3-like
[Glycine max]
Length = 510
Score = 539 bits (1388), Expect = e-150, Method: Compositional matrix adjust.
Identities = 284/529 (53%), Positives = 380/529 (71%), Gaps = 36/529 (6%)
Query: 1 MLTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQ 60
M+T++G K AVH+IT HFG +VAKVCE L GPLT + RYT+L+ +QV+N+LLVL+Q
Sbjct: 1 MVTQHGIKFAVHLITKHFGKIVAKVCENLFIHGPLTLDQLVRYTDLTKDQVRNSLLVLVQ 60
Query: 61 QNCVQAFTTEQPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGL 120
NCVQAF + D D + TQY+VLFD+ILHR+RF KFL I+S++ D++CV+L+ GL
Sbjct: 61 HNCVQAFVSAPQDD--DRLRVRTQYLVLFDSILHRLRFPKFLEIVSRKLDEECVKLLDGL 118
Query: 121 LEHGRLTLKQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEE 180
L GRLTLKQM DR E N V +RETL KL+TA +VERCPA EP+ + S +E
Sbjct: 119 LRDGRLTLKQMVDR------EKNAVPTKVVRETLCKLLTARFVERCPAPEPV-VSTSFKE 171
Query: 181 GPARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGE 240
RK+G+KSAK PET+EQ+VV+AA+P + +RFS+ + V ++E NS++
Sbjct: 172 TTTRKRGAKSAKIFEAPETLEQRVVDAAVPGDVIRFSLAADTRCSV-DRETNSDDA---- 226
Query: 241 KRKHDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQA 300
++ ++E VA E +++RANFE FIR LRHK I++VR DDG A VLSA+L+A
Sbjct: 227 ----QMISVEE-EVAKEGQILWRANFEEFIRHLRHKVLIENVRTQHDDGTATVLSAVLEA 281
Query: 301 TSSAEKKVKTKNSVPLSLSSIYEEVIKSEAGRNMTLDHVRASLVQL-------------- 346
T S +KKVKT+NSVPLSL +I EV+K++ GR MT+D +RASLVQL
Sbjct: 282 TRSVQKKVKTENSVPLSLDTIITEVMKTDTGRTMTVDRIRASLVQLGCSPSMILEESYSI 341
Query: 347 DFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKIL 406
D +KIIE A+NEEVES+V KRYG D YRIFRLL+K +TD+I+ +T VEKK+A K+L
Sbjct: 342 DLKKIIEPARNEEVESIVLKRYGTDGYRIFRLLAKDCCFHDTDQIAASTLVEKKEASKLL 401
Query: 407 YKLWKDGYLLMEKLVVT-GARQSQFLLWKVNRQILWKHVLDEMFHAALNLSLRVSYELDR 465
YKLWKD YL MEK+ T GA+Q+ L+WKVN+ +LW++VLDEM+HAALNLSLR+++E ++
Sbjct: 402 YKLWKDNYLYMEKVGATVGAKQTTILMWKVNKPLLWEYVLDEMYHAALNLSLRMAFEQEK 461
Query: 466 EKELLNLPADKR--TGPLQDRYNRIRKVRILLESSQMKLDDAILLFHDF 512
++ELL +P DKR GPLQ +Y ++ V +LL SS MKLDDA++LFHDF
Sbjct: 462 DEELLKVPKDKRQGPGPLQKKYKKLLNVWLLLGSSLMKLDDALMLFHDF 510
>gi|356574495|ref|XP_003555382.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC3-like
[Glycine max]
Length = 518
Score = 539 bits (1388), Expect = e-150, Method: Compositional matrix adjust.
Identities = 285/531 (53%), Positives = 385/531 (72%), Gaps = 32/531 (6%)
Query: 1 MLTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQ 60
M+TE+G K VH+IT HFG +VAKVCE L GPLT + RYT+ + +QV+N+LLVL+Q
Sbjct: 1 MVTEHGIKFGVHLITKHFGKIVAKVCEKLFSHGPLTLDQLVRYTDFTKDQVRNSLLVLVQ 60
Query: 61 QNCVQAFTT--EQPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQ 118
NC QAF + + D AD + TQY+VLFDNI+HR+RF KFL I+S++ D++CV+L+
Sbjct: 61 HNCAQAFVSAPQDDDDDADRLRVRTQYLVLFDNIIHRLRFPKFLDIVSRKLDEECVKLLV 120
Query: 119 GLLEHGRLTLKQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISE 178
GLL GRLTLKQM DR S+ + N V +RETL KL+TA +VERCPA EP++ S
Sbjct: 121 GLLRDGRLTLKQMVDR--ESQGKENAVPTKVVRETLCKLLTARFVERCPAPEPVV-STSF 177
Query: 179 EEGPARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTP 238
+E +K+G+KSAK PET+EQ+VV+AA+P + +RFS+ N+ S+V ++E NS++V
Sbjct: 178 KETTTKKRGAKSAKIFEAPETLEQRVVDAAVPGDVIRFSLTANMGSNV-DRETNSDDVP- 235
Query: 239 GEKRKHDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAML 298
++ ++E VA E+ +++RANFE FIR LRHK I++VR DDG A VLSA+L
Sbjct: 236 -------MISVEE-DVAKEEQILWRANFEEFIRHLRHKVLIENVRTQHDDGTATVLSAVL 287
Query: 299 QATSSAEKKVKTKNSVPLSLSSIYEEVIKSEAGRNMTLDHVRASLVQL------------ 346
+AT S EKKVK NSVPLSL +I EV+K++ GR MT+D +RASLVQL
Sbjct: 288 EATGSVEKKVKMDNSVPLSLDTIITEVMKTDTGRTMTIDRIRASLVQLGCSPSMILEESY 347
Query: 347 --DFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPK 404
D +KIIE A+NEEVES+V KRYGRDAYR+FRLL+K +TD+I+ +T VEKK+A K
Sbjct: 348 CIDLKKIIEPARNEEVESIVLKRYGRDAYRMFRLLAKDCCFHDTDQIAASTLVEKKEASK 407
Query: 405 ILYKLWKDGYLLMEKLVVT-GARQSQFLLWKVNRQILWKHVLDEMFHAALNLSLRVSYEL 463
+LYKLWKD YL MEK+ T GA+Q L+WKVN+ +LW++VLDEM+HAALNLSLR+++E
Sbjct: 408 LLYKLWKDNYLYMEKVGATAGAKQITILMWKVNKPLLWEYVLDEMYHAALNLSLRMAFEQ 467
Query: 464 DREKELLNLPADK--RTGPLQDRYNRIRKVRILLESSQMKLDDAILLFHDF 512
++++ELL +P DK GPLQ +Y R+ VR+L+ SS +KLDDA++LFHDF
Sbjct: 468 EKDEELLKVPKDKLREPGPLQKKYKRLLNVRLLMGSSLLKLDDALMLFHDF 518
>gi|297737009|emb|CBI26210.3| unnamed protein product [Vitis vinifera]
Length = 517
Score = 537 bits (1384), Expect = e-150, Method: Compositional matrix adjust.
Identities = 287/530 (54%), Positives = 366/530 (69%), Gaps = 31/530 (5%)
Query: 1 MLTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQ 60
M EYG K AVH+I+ FGD AKVC+CLLRKG L ++ R +LS +QVK L VLIQ
Sbjct: 1 MTPEYGIKLAVHLISTDFGDHAAKVCDCLLRKGTLALDDIVRTAKLSPQQVKTYLKVLIQ 60
Query: 61 QNCVQAFTTEQPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGL 120
NCVQAF E G +GP TQY++LFDNILHR+RF K L I+S+E D++C EL +
Sbjct: 61 HNCVQAFAMEHEGGCGEGPVVVTQYMLLFDNILHRMRFPKLLAIVSKELDKECEELFEAF 120
Query: 121 LEHGRLTLKQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEE 180
L+HG LTL+Q+ DR S++ EGN D+LR + KLV AHYVERCPA +P L+P EE+
Sbjct: 121 LKHGWLTLQQILDRVPSNQNEGNCTVQDALRGSFTKLVNAHYVERCPAPDPFLVPPDEEK 180
Query: 181 GPARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDV-GEKE-KNSNNVTP 238
PARK + SAK + E E EQ + A P +A F V+T+ D+ G+K N V
Sbjct: 181 TPARKHDANSAKAVEELEIGEQCDIAKATPSKAKGFPVITDTCGDINGDKSIGNPPGVVI 240
Query: 239 GEKRKHDVLELD-ECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAM 297
G+KRK D L+LD E G A E+ V +RAN++ + LRHK CI++VRA LD GAA VLSAM
Sbjct: 241 GKKRKQDALKLDTESGAASEKDVPWRANYKELVCHLRHKACIENVRARLDSGAAIVLSAM 300
Query: 298 LQATSSAEKKVKTKNSVPLSLSSIYEEVIKSEAGRNMTLDHVRASLVQL----------- 346
L+AT SAEK VK + SV LS+S+I E V++SEAG +MTL+ +RASLVQL
Sbjct: 301 LEATQSAEKNVKEEISVLLSISTITEAVMQSEAGCSMTLERIRASLVQLGCHPNGVGADR 360
Query: 347 ----DFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDA 402
D +KIIE+AQN+EVES+V KRYGR+A+RIFRLLSKS LET KISDTTF+EKK+A
Sbjct: 361 TYNIDLKKIIELAQNDEVESMVLKRYGREAHRIFRLLSKSCCPLETTKISDTTFIEKKEA 420
Query: 403 PKILYKLWKDGYLLMEKLVVTGARQSQFLLWKVNRQILWKHVLDEMFHAALNLSLRVSYE 462
KILYKLWKD L MEK+V+ +RQSQF+LWKV + W+H+LDEM+HAALNLS+++
Sbjct: 421 AKILYKLWKDECLHMEKIVLNESRQSQFMLWKVKKDTFWRHILDEMYHAALNLSIQI--- 477
Query: 463 LDREKELLNLPADKRTGPLQDRYNRIRKVRILLESSQMKLDDAILLFHDF 512
+ L DK G L++R R+ ILL++S MKLDDA++LFHDF
Sbjct: 478 -------IELRRDKHVGALRERDVRL---AILLQASLMKLDDALMLFHDF 517
>gi|297809071|ref|XP_002872419.1| RNA polymerase III subunit RPC82 family protein [Arabidopsis lyrata
subsp. lyrata]
gi|297318256|gb|EFH48678.1| RNA polymerase III subunit RPC82 family protein [Arabidopsis lyrata
subsp. lyrata]
Length = 521
Score = 490 bits (1261), Expect = e-136, Method: Compositional matrix adjust.
Identities = 259/534 (48%), Positives = 369/534 (69%), Gaps = 38/534 (7%)
Query: 2 LTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTE--LSDEQVKNALLVLI 59
++E+G +AVH+IT FG +V+KVCECLLRKGPL+ +++ R E ++ QVK+ L +LI
Sbjct: 3 MSEFGIVYAVHIITVQFGSVVSKVCECLLRKGPLSSRDISRLAESDINHNQVKDILYLLI 62
Query: 60 QQNCVQAFTTEQPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQG 119
Q NCVQAF+ E PDG KA QY+VLF+NILHRVR+ KF I+++E +C ++ G
Sbjct: 63 QHNCVQAFSIEPPDG--SESKAIVQYIVLFNNILHRVRYNKFSRIVNEELGSECGAVLDG 120
Query: 120 LLEHGRLTLKQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEE 179
LL +GRLTL Q+ +R + S G + +++R++L KLV A +VER P+ EP+L +++
Sbjct: 121 LLSNGRLTLGQLIERDRDS---GKTIGSEAIRDSLQKLVAARFVERIPSPEPVLG--NKD 175
Query: 180 EGPARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEK-EKNSNNVTP 238
+ PA+K+G+K+AK + EPET+E++VVEAA P++A+RF ++ E D + +N+T
Sbjct: 176 QEPAKKRGAKAAKILKEPETLEERVVEAATPVDAIRFPLI--FEEDFNSSLADDDSNITE 233
Query: 239 GEKRKHDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAML 298
G++++ DV D V++R NFE FI RLRHK C++ V+ D+G A VL AML
Sbjct: 234 GKRKQRDVDSSDPSS-----RVIWRPNFEEFIHRLRHKACVEIVKERRDEGCAIVLRAML 288
Query: 299 QATSSAEKKVKTKNSVPLSLSSIYEEVIKSEAGRNMTLDHVRASLVQL------------ 346
+ EKKVKT NS P+S+ SIYEEVIK+EAGR M + V A L QL
Sbjct: 289 EVGRPQEKKVKTDNSAPMSVGSIYEEVIKTEAGRTMLQERVEACLDQLSATSSYLPAFVT 348
Query: 347 --------DFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVE 398
DF+ II +AQ +E+E+VV +RYG++A+R+FR LS+ GR ++TDKI+D E
Sbjct: 349 EMNDSYIVDFKSIISVAQKDEIEAVVMRRYGKEAFRMFRYLSQEGRFVDTDKIADAALTE 408
Query: 399 KKDAPKILYKLWKDGYLLMEKLVVTGARQSQFLLWKVNRQILWKHVLDEMFHAALNLSLR 458
KKD P+IL K+WKDGYL M+KL +TG FLLWKVN+ I+ + +LDEM+HA+LNL+LR
Sbjct: 409 KKDTPQILLKMWKDGYLHMQKLAITGT-YVPFLLWKVNKLIVTRQMLDEMYHASLNLNLR 467
Query: 459 VSYELDREKELLNLPADKRTGPLQDRYNRIRKVRILLESSQMKLDDAILLFHDF 512
+++EL+ EKELL LP+DK GPL++R ++R R+LL S+ KLDDAI+LFHDF
Sbjct: 468 LAHELESEKELLMLPSDKLEGPLKERVKKVRAKRLLLSSTMFKLDDAIMLFHDF 521
>gi|18408755|ref|NP_566914.1| RNA polymerase III subunit RPC82 family protein [Arabidopsis
thaliana]
gi|20466336|gb|AAM20485.1| RNA polymerase III subunit-like protein [Arabidopsis thaliana]
gi|34098883|gb|AAQ56824.1| At3g49000 [Arabidopsis thaliana]
gi|332644960|gb|AEE78481.1| RNA polymerase III subunit RPC82 family protein [Arabidopsis
thaliana]
Length = 523
Score = 489 bits (1258), Expect = e-135, Method: Compositional matrix adjust.
Identities = 261/534 (48%), Positives = 370/534 (69%), Gaps = 36/534 (6%)
Query: 2 LTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTE--LSDEQVKNALLVLI 59
++E+G +A+H+IT FG +V+KVCECLLRKGPL+ +++ R E ++ +VK+ L +LI
Sbjct: 3 MSEFGIVYAIHIITVQFGSVVSKVCECLLRKGPLSSRDISRLAESDINHNKVKDILYLLI 62
Query: 60 QQNCVQAFTTEQPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQG 119
Q NCVQAF+ E PDG KA QY+VLF+NILHRVR+ KF I+++E D +C ++ G
Sbjct: 63 QHNCVQAFSIEPPDG--SESKAIVQYIVLFNNILHRVRYNKFSRIVNEELDSKCGAVLDG 120
Query: 120 LLEHGRLTLKQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEE 179
LL +GRLTL Q +R + S GN + +++R++L KLV A +VER P+ EP+L ++E
Sbjct: 121 LLSNGRLTLGQFIERDRDS---GNTIGSEAIRDSLQKLVAARFVERIPSPEPVLG--NKE 175
Query: 180 EGPARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPG 239
+ PA+++G+K+AK + EPET+E+QVVEAA P++A+RF ++ +S+ + NSN +T G
Sbjct: 176 KEPAKRRGAKAAKILKEPETLEEQVVEAATPVDAIRFPLIFEEDSNSSLADDNSN-ITEG 234
Query: 240 EKRKHDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQ 299
++++ DV D V++R NFE FI RLRHK C++ V+ D+G A VL AML+
Sbjct: 235 KRKQRDVDTSDSSS-----GVIWRPNFEEFIHRLRHKACVEIVKERRDEGCAIVLRAMLE 289
Query: 300 ATSSAEKKVKTKNSVPLSLSSIYEEVIKSEAGRNMTLDHVRASLVQL------------- 346
S EKKVKT NS P+S+ SIYEEVIK+EAGR M + V A L QL
Sbjct: 290 VGRSQEKKVKTDNSAPMSVGSIYEEVIKTEAGRTMLQERVEACLDQLSATSSYLPAFVNE 349
Query: 347 -------DFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEK 399
D++ II +AQ +E+E+VV +RYG++A+R+FR LS+ GR +ETDKI+D EK
Sbjct: 350 VNDSYIVDYKSIISVAQKDEIEAVVMRRYGKEAFRMFRYLSQEGRFVETDKIADAALTEK 409
Query: 400 KDAPKILYKLWKDGYLLMEKLVVTG-ARQSQFLLWKVNRQILWKHVLDEMFHAALNLSLR 458
KD P+ L K+WKDGYL M+KL VT + FLLWKVN+ I+ +LDEM+HA+LNLSLR
Sbjct: 410 KDTPQFLLKMWKDGYLHMQKLAVTAPGMYTPFLLWKVNKLIVTTQMLDEMYHASLNLSLR 469
Query: 459 VSYELDREKELLNLPADKRTGPLQDRYNRIRKVRILLESSQMKLDDAILLFHDF 512
+++EL+ EKELL LP DK GPL++R +++ R+LL S+ KLDDAI+LFHDF
Sbjct: 470 LAHELEAEKELLLLPLDKLEGPLKERLKKVKAKRLLLSSTMFKLDDAIMLFHDF 523
>gi|297816108|ref|XP_002875937.1| RNA polymerase III subunit RPC82 family protein [Arabidopsis lyrata
subsp. lyrata]
gi|297321775|gb|EFH52196.1| RNA polymerase III subunit RPC82 family protein [Arabidopsis lyrata
subsp. lyrata]
Length = 521
Score = 488 bits (1255), Expect = e-135, Method: Compositional matrix adjust.
Identities = 257/533 (48%), Positives = 369/533 (69%), Gaps = 36/533 (6%)
Query: 2 LTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTE--LSDEQVKNALLVLI 59
++E+G +AVH+IT FG +V+KVCECLLRKGPL+ +++ R E ++ QVK+ L +LI
Sbjct: 3 MSEFGIVYAVHIITVQFGSVVSKVCECLLRKGPLSSRDISRLAESDINHNQVKDILYLLI 62
Query: 60 QQNCVQAFTTEQPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQG 119
Q NCVQAF+ E PDG KA QY+VLF+NILHRVR+ KF ++++E +C ++ G
Sbjct: 63 QHNCVQAFSIEPPDG--SESKAIVQYIVLFNNILHRVRYNKFSRLVNEELGSECGAVLDG 120
Query: 120 LLEHGRLTLKQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEE 179
LL +GRLTL Q+ +R + S G + +++R++L KLV A +VER P+ EP+L ++E
Sbjct: 121 LLSNGRLTLGQLIERDRGS---GKTIGSEAIRDSLQKLVAARFVERIPSPEPVLG--NKE 175
Query: 180 EGPARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPG 239
+ PA+K+G+K+AK + EPET+E++VVEAA P++A+RF ++ ++ + +SN +T G
Sbjct: 176 QEPAKKRGAKAAKILKEPETLEERVVEAATPVDAIRFPLIFEEDAHSSLADDDSN-ITEG 234
Query: 240 EKRKHDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQ 299
++++ DV D V++ N+E FI RLRHK C++ V+ D+G A VL AML+
Sbjct: 235 KRKQRDVDSSDPSS-----GVIWHPNYEEFIHRLRHKACVEIVKERRDEGCAIVLRAMLE 289
Query: 300 ATSSAEKKVKTKNSVPLSLSSIYEEVIKSEAGRNMTLDHVRASLVQL------------- 346
S EKKVKT NS P+S+ SIYEEVIK+EAGR M + V A L QL
Sbjct: 290 VGRSQEKKVKTDNSAPMSIGSIYEEVIKTEAGRTMLQERVEACLDQLSATSSYLPAFVTE 349
Query: 347 -------DFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEK 399
DF+ II +AQ +E+E+VV +RYG++A+R+FR LS+ GR +ETDKI+D EK
Sbjct: 350 MNDSYIVDFKSIISVAQKDEIEAVVMRRYGKEAFRMFRYLSQEGRFVETDKIADAALTEK 409
Query: 400 KDAPKILYKLWKDGYLLMEKLVVTGARQSQFLLWKVNRQILWKHVLDEMFHAALNLSLRV 459
KD P+ L K+WKDGYL M+KL +TG FLLWKVN+ I+ + +LDEM+HA+LNL+LR+
Sbjct: 410 KDTPQFLLKMWKDGYLHMQKLAITGT-YVPFLLWKVNKLIVTRQMLDEMYHASLNLNLRL 468
Query: 460 SYELDREKELLNLPADKRTGPLQDRYNRIRKVRILLESSQMKLDDAILLFHDF 512
++EL+ EKELL LP+DK GPL++R ++R R+LL S+ KLDDAI+LFHDF
Sbjct: 469 AHELESEKELLMLPSDKLEGPLKERVIKVRAKRLLLSSTMFKLDDAIMLFHDF 521
>gi|21553700|gb|AAM62793.1| RNA polymerase III subunit-like protein [Arabidopsis thaliana]
Length = 521
Score = 487 bits (1253), Expect = e-135, Method: Compositional matrix adjust.
Identities = 260/534 (48%), Positives = 370/534 (69%), Gaps = 36/534 (6%)
Query: 2 LTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTE--LSDEQVKNALLVLI 59
++E+G +A+H+IT FG +V+KVCECLLRKGPL+ +++ R E ++ +VK+ L +LI
Sbjct: 1 MSEFGIVYAIHIITVQFGSVVSKVCECLLRKGPLSSRDISRLAESDINHNKVKDILYLLI 60
Query: 60 QQNCVQAFTTEQPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQG 119
Q NCVQAF+ E PDG KA QY+VLF+NILHRVR+ KF I++++ D +C ++ G
Sbjct: 61 QHNCVQAFSIEPPDG--SESKAIVQYIVLFNNILHRVRYNKFSRIVNEQLDSKCGAVLDG 118
Query: 120 LLEHGRLTLKQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEE 179
LL +GRLTL Q +R + S GN + +++R++L KLV A +VER P+ EP+L ++E
Sbjct: 119 LLSNGRLTLGQFIERDRDS---GNTIGSEAIRDSLQKLVAARFVERIPSPEPVLG--NKE 173
Query: 180 EGPARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPG 239
+ PA+++G+K+AK + EPET+E+QVVEAA P++A+RF ++ +S+ + NSN +T G
Sbjct: 174 KEPAKRRGAKAAKILKEPETLEEQVVEAATPVDAIRFPLIFEEDSNSSLADDNSN-ITEG 232
Query: 240 EKRKHDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQ 299
++++ DV D V++R NFE FI RLRHK C++ V+ D+G A VL AML+
Sbjct: 233 KRKQRDVDTSDSSS-----GVIWRPNFEEFIHRLRHKACVEIVKERRDEGCAIVLRAMLE 287
Query: 300 ATSSAEKKVKTKNSVPLSLSSIYEEVIKSEAGRNMTLDHVRASLVQL------------- 346
S EKKVKT NS P+S+ SIYEEVIK+EAGR M + V A L QL
Sbjct: 288 VGRSQEKKVKTDNSAPMSVGSIYEEVIKTEAGRTMLQERVEACLDQLSATSSYLPAFVNE 347
Query: 347 -------DFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEK 399
D++ II +AQ +E+E+VV +RYG++A+R+FR LS+ GR +ETDKI+D EK
Sbjct: 348 VNDSYIVDYKSIISVAQKDEIEAVVMRRYGKEAFRMFRYLSQEGRFVETDKIADAALTEK 407
Query: 400 KDAPKILYKLWKDGYLLMEKLVVTG-ARQSQFLLWKVNRQILWKHVLDEMFHAALNLSLR 458
KD P+ L K+WKDGYL M+KL VT + FLLWKVN+ I+ +LDEM+HA+LNLSLR
Sbjct: 408 KDTPQFLLKMWKDGYLHMQKLAVTAPGMYTPFLLWKVNKLIVTTQMLDEMYHASLNLSLR 467
Query: 459 VSYELDREKELLNLPADKRTGPLQDRYNRIRKVRILLESSQMKLDDAILLFHDF 512
+++EL+ EKELL LP DK GPL++R +++ R+LL S+ KLDDAI+LFHDF
Sbjct: 468 LAHELEAEKELLLLPLDKLEGPLKERLKKVKAKRLLLSSTMFKLDDAIMLFHDF 521
>gi|357444007|ref|XP_003592281.1| DNA-directed RNA polymerase III subunit RPC3 [Medicago truncatula]
gi|355481329|gb|AES62532.1| DNA-directed RNA polymerase III subunit RPC3 [Medicago truncatula]
Length = 505
Score = 472 bits (1214), Expect = e-130, Method: Compositional matrix adjust.
Identities = 263/528 (49%), Positives = 359/528 (67%), Gaps = 39/528 (7%)
Query: 1 MLTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQ 60
M++++G K AVH+IT HFG +VA V E LL GPLT + V RYTELS+E VKN+LLVLIQ
Sbjct: 1 MVSQWGIKFAVHLITAHFGKIVANVAEKLLNNGPLTLELVTRYTELSNEHVKNSLLVLIQ 60
Query: 61 QNCVQAFTTEQPDGFADGPKA-NTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQG 119
NCVQAFT G DG + +Y+VLFDNI+HR+RF KF+ I+SQE D +CV +++G
Sbjct: 61 HNCVQAFTEA---GDEDGSRVVKPKYLVLFDNIVHRLRFPKFMEIVSQELDDKCVTILKG 117
Query: 120 LLEHGRLTLKQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEE 179
LL GRLTLKQ+ D + E N + D++RE+L +L+ A YVERCP E ++ +
Sbjct: 118 LLRDGRLTLKQLVDMGQDKE---NAMAPDAVRESLCRLLRARYVERCPVPEAKIVEEKGD 174
Query: 180 EGPARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVV--TNVESDVGEKEKNSNNVT 237
+ R +K A+ PE E +VVEAA + +RFS+ T SD
Sbjct: 175 DKKGRSTSNKKARVFKVPE--EHRVVEAAKRGDMIRFSLTAYTGCSSD------------ 220
Query: 238 PGEKRKHDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAM 297
GE + D+ + VA E+S ++RANFE FIR LR K I++VRA +DDGAA VLSA+
Sbjct: 221 -GETKLADISVAE--NVAKEESFLWRANFEEFIRYLRDKALIENVRARMDDGAATVLSAI 277
Query: 298 LQATSSAEKKVKTKNSVPLSLSSIYEEVIKSEAGRNMTLDHVRASLVQL--------DFE 349
L+AT + +K VK + S P +L +I EV+K+E GR MT+D V+A+LVQL DF+
Sbjct: 278 LEATRNIDKNVKIEQSAPCTLDTISSEVMKTENGRTMTMDRVKAALVQLGCANQNIVDFK 337
Query: 350 KIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKL 409
+II +A+NEEVES+V KRYGRDAYR+FR L K + TD+I++ T VEKK+APK+L+KL
Sbjct: 338 RIIHLARNEEVESIVLKRYGRDAYRMFRHLLKENQFRPTDQIAEATLVEKKEAPKLLFKL 397
Query: 410 WKDGYLLMEKLVVTGARQ---SQFLLWKVNRQILWKHVLDEMFHAALNLSLRVSYELDRE 466
W++ YL MEKL V+ Q S L+WKVN+ +LW+HVLDEM+H ALNL LR+++E +++
Sbjct: 398 WRENYLQMEKLTVSMTSQNGTSPILMWKVNQPLLWEHVLDEMYHGALNLKLRMAFEEEKD 457
Query: 467 KELLNLPADKR--TGPLQDRYNRIRKVRILLESSQMKLDDAILLFHDF 512
+E+LN+ R + PLQ +Y R+R V +LL+SS MKLDDA++LFHDF
Sbjct: 458 EEILNISKKTRNESAPLQKKYERLRNVLLLLKSSLMKLDDALMLFHDF 505
>gi|6522566|emb|CAB62010.1| RNA polymerase III subunit-like protein [Arabidopsis thaliana]
Length = 529
Score = 462 bits (1188), Expect = e-127, Method: Compositional matrix adjust.
Identities = 255/544 (46%), Positives = 365/544 (67%), Gaps = 48/544 (8%)
Query: 2 LTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTE--LSDEQVKNALLVLI 59
++E+G +A+H+IT FG +V+KVCECLLRKGPL+ +++ R E ++ +VK+ L +LI
Sbjct: 1 MSEFGIVYAIHIITVQFGSVVSKVCECLLRKGPLSSRDISRLAESDINHNKVKDILYLLI 60
Query: 60 QQNCVQAFTTEQPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQG 119
Q NCVQAF+ E PDG KA QY+VLF+NILHRVR+ KF I+++E D +C ++ G
Sbjct: 61 QHNCVQAFSIEPPDG--SESKAIVQYIVLFNNILHRVRYNKFSRIVNEELDSKCGAVLDG 118
Query: 120 LLEHGRLTLKQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEE 179
LL +GRLTL Q +R + S GN + +++R++L KLV A +VER P+ EP+L ++E
Sbjct: 119 LLSNGRLTLGQFIERDRDS---GNTIGSEAIRDSLQKLVAARFVERIPSPEPVLG--NKE 173
Query: 180 EGPARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPG 239
+ PA+++G+K+AK + EPET+E+QVVEAA P++A+RF ++ +S+ + NSN +T G
Sbjct: 174 KEPAKRRGAKAAKILKEPETLEEQVVEAATPVDAIRFPLIFEEDSNSSLADDNSN-ITEG 232
Query: 240 EKRKHDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQ 299
++++ DV D V++R NFE FI RLRHK C++ V+ D+G A VL AML+
Sbjct: 233 KRKQRDVDTSDSSS-----GVIWRPNFEEFIHRLRHKACVEIVKERRDEGCAIVLRAMLE 287
Query: 300 ATSSAEKKVKTK----------NSVPLSLSSIYEEVIKSEAGRNMTLDHVRASLVQL--- 346
S EKK + + P+S+ SIYEEVIK+EAGR M + V A L QL
Sbjct: 288 VGRSQEKKSTYEVLLTEFAIIFETAPMSVGSIYEEVIKTEAGRTMLQERVEACLDQLSAT 347
Query: 347 -----------------DFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETD 389
D++ II +AQ +E +VV +RYG++A+R+FR LS+ GR +ETD
Sbjct: 348 SSYLPAFVNEVNDSYIVDYKSIISVAQKDE--AVVMRRYGKEAFRMFRYLSQEGRFVETD 405
Query: 390 KISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTG-ARQSQFLLWKVNRQILWKHVLDEM 448
KI+D EKKD P+ L K+WKDGYL M+KL VT + FLLWKVN+ I+ +LDEM
Sbjct: 406 KIADAALTEKKDTPQFLLKMWKDGYLHMQKLAVTAPGMYTPFLLWKVNKLIVTTQMLDEM 465
Query: 449 FHAALNLSLRVSYELDREKELLNLPADKRTGPLQDRYNRIRKVRILLESSQMKLDDAILL 508
+HA+LNLSLR+++EL+ EKELL LP DK GPL++R +++ R+LL S+ KLDDAI+L
Sbjct: 466 YHASLNLSLRLAHELEAEKELLLLPLDKLEGPLKERLKKVKAKRLLLSSTMFKLDDAIML 525
Query: 509 FHDF 512
FHDF
Sbjct: 526 FHDF 529
>gi|357444005|ref|XP_003592280.1| DNA-directed RNA polymerase III subunit RPC3 [Medicago truncatula]
gi|355481328|gb|AES62531.1| DNA-directed RNA polymerase III subunit RPC3 [Medicago truncatula]
Length = 468
Score = 438 bits (1127), Expect = e-120, Method: Compositional matrix adjust.
Identities = 238/483 (49%), Positives = 326/483 (67%), Gaps = 37/483 (7%)
Query: 1 MLTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQ 60
M++++G K AVH+IT HFG +VA V E LL GPLT + V RYTELS+E VKN+LLVLIQ
Sbjct: 1 MVSQWGIKFAVHLITAHFGKIVANVAEKLLNNGPLTLELVTRYTELSNEHVKNSLLVLIQ 60
Query: 61 QNCVQAFTTEQPDGFADGPKA-NTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQG 119
NCVQAFT G DG + +Y+VLFDNI+HR+RF KF+ I+SQE D +CV +++G
Sbjct: 61 HNCVQAFTEA---GDEDGSRVVKPKYLVLFDNIVHRLRFPKFMEIVSQELDDKCVTILKG 117
Query: 120 LLEHGRLTLKQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEE 179
LL GRLTLKQ+ D + E N + D++RE+L +L+ A YVERCP E ++ +
Sbjct: 118 LLRDGRLTLKQLVDMGQDKE---NAMAPDAVRESLCRLLRARYVERCPVPEAKIVEEKGD 174
Query: 180 EGPARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVV--TNVESDVGEKEKNSNNVT 237
+ R +K A+ PE E +VVEAA + +RFS+ T SD
Sbjct: 175 DKKGRSTSNKKARVFKVPE--EHRVVEAAKRGDMIRFSLTAYTGCSSD------------ 220
Query: 238 PGEKRKHDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAM 297
GE + D+ + VA E+S ++RANFE FIR LR K I++VRA +DDGAA VLSA+
Sbjct: 221 -GETKLADISVAE--NVAKEESFLWRANFEEFIRYLRDKALIENVRARMDDGAATVLSAI 277
Query: 298 LQATSSAEKKVKTKNSVPLSLSSIYEEVIKSEAGRNMTLDHVRASLVQL--------DFE 349
L+AT + +K VK + S P +L +I EV+K+E GR MT+D V+A+LVQL DF+
Sbjct: 278 LEATRNIDKNVKIEQSAPCTLDTISSEVMKTENGRTMTMDRVKAALVQLGCANQNIVDFK 337
Query: 350 KIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKL 409
+II +A+NEEVES+V KRYGRDAYR+FR L K + TD+I++ T VEKK+APK+L+KL
Sbjct: 338 RIIHLARNEEVESIVLKRYGRDAYRMFRHLLKENQFRPTDQIAEATLVEKKEAPKLLFKL 397
Query: 410 WKDGYLLMEKLVVTGARQ---SQFLLWKVNRQILWKHVLDEMFHAALNLSLRVSYELDRE 466
W++ YL MEKL V+ Q S L+WKVN+ +LW+HVLDEM+H ALNL LR+++E +++
Sbjct: 398 WRENYLQMEKLTVSMTSQNGTSPILMWKVNQPLLWEHVLDEMYHGALNLKLRMAFEEEKD 457
Query: 467 KEL 469
+E+
Sbjct: 458 EEV 460
>gi|147790067|emb|CAN75989.1| hypothetical protein VITISV_012194 [Vitis vinifera]
Length = 549
Score = 399 bits (1026), Expect = e-108, Method: Compositional matrix adjust.
Identities = 231/497 (46%), Positives = 302/497 (60%), Gaps = 57/497 (11%)
Query: 1 MLTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQ 60
M EYG K AVH+I+ FGD AKVC+CL+RKG L ++ R T+LS +QVK L VLIQ
Sbjct: 1 MTPEYGIKLAVHLISTDFGDHAAKVCDCLIRKGTLALDDIVRTTKLSPQQVKTYLKVLIQ 60
Query: 61 QNCVQAFTTEQPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGL 120
NCVQAF E G +GP TQY++LFDNILHR+RF K L I+S+E D++C +L +
Sbjct: 61 HNCVQAFAMEHEGGCGEGPVVVTQYMLLFDNILHRMRFPKLLAIVSKELDKECEKLFEAF 120
Query: 121 LEHGRLTLKQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEE 180
L+HG LTL+Q+ DR S++ EGN D+LR + KLV AHYVERCPA +P L+P EE+
Sbjct: 121 LKHGWLTLQQILDRVPSNQNEGNCTVQDALRGSFTKLVNAHYVERCPAPDPFLVPPDEEK 180
Query: 181 GPARKKGSKSAK-------KIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNS 233
PARK + SAK + E E EQ + A P +A F V+T+ D+ +
Sbjct: 181 TPARKHDANSAKALTDSCQAVEELEIGEQCDIAKATPSKAKGFPVITDTCGDINGDKSIG 240
Query: 234 NNVTPGEKRKHDVLE-------LDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHL 286
N PG V + + G+A E+ V +RAN+ + CI++VRA L
Sbjct: 241 N--PPGVVIXKKVAQARCFKIGIQNLGLASEKDVPWRANY-------KELACIENVRARL 291
Query: 287 DDGAANVLSAMLQATSSAEKKVKTKNSVPLSLSSIYEEVIKSEAGRNMTLDHVRASLVQL 346
D GAA VLSAML+AT SAEK VK + SV LS+++I E V++SEAG +MTL+ +RASLVQL
Sbjct: 292 DSGAAIVLSAMLEATQSAEKNVKEEISVLLSINTITEAVMQSEAGCSMTLERIRASLVQL 351
Query: 347 DFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKIL 406
G D ET I DTTF+EKK+A KIL
Sbjct: 352 GCH---------------PNGVGAD---------------ETYNI-DTTFIEKKEAAKIL 380
Query: 407 YKLWKDGYLLMEKLVVTGARQSQFLLWKVNRQILWKHVLDEMFHAALNLSLRVSYELDRE 466
YKLWKD L MEK+V+ +RQSQF+LWKV + W+H+LDEM+HAALNLS+R+ EL+
Sbjct: 381 YKLWKDECLHMEKIVLNESRQSQFMLWKVKKDTFWRHILDEMYHAALNLSIRI-IELNSM 439
Query: 467 KELLNLPADKRTGPLQD 483
+ LL D+ GPLQ+
Sbjct: 440 ETLLASCKDR--GPLQN 454
>gi|414881489|tpg|DAA58620.1| TPA: hypothetical protein ZEAMMB73_769576 [Zea mays]
Length = 507
Score = 324 bits (831), Expect = 5e-86, Method: Compositional matrix adjust.
Identities = 201/532 (37%), Positives = 311/532 (58%), Gaps = 45/532 (8%)
Query: 1 MLTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQ 60
M++++G AV++I++HFG +V+KVC CLLR G L+ Q++ R ELS QVKN+LL+LIQ
Sbjct: 1 MVSQHGILLAVNIISDHFGPIVSKVCGCLLRHGALSLQDIVRRLELSPGQVKNSLLILIQ 60
Query: 61 QNCVQAFTTEQPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGL 120
NCVQA+T+ P G D + T Y+ +FDN+LHR+RF+KFL+++ + + L++GL
Sbjct: 61 HNCVQAYTS--PRGAGD--RTVTLYLAIFDNVLHRLRFSKFLSVVRVDIPEVSEVLLEGL 116
Query: 121 LEHGRLTLKQMFDRA--KSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISE 178
L++GRLT +Q+ +R K SE + L + +R KLV AHYVERCP EP P++
Sbjct: 117 LQNGRLTFEQLVERTIFKVSE-DSPLPTREEVRMNFNKLVYAHYVERCPKPEPFFDPLAV 175
Query: 179 EEGPARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTP 238
E+ + +K ++ K + ++EQ+VV A +A RFS + D K+ ++
Sbjct: 176 EQPTSTRK--RAPKTVEAVLSLEQKVVCTAALSDAERFSEIPYF-MDGSSSAKDGHHAVA 232
Query: 239 GEKRKHDVLELDE-CGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAM 297
G KRKH+ LE+DE + E V++R NFE FI L+ K C + +A + G + A
Sbjct: 233 GNKRKHETLEVDEDDSIIAESEVLWRINFERFIFCLKKKFCAERKKAKMRLGTLAIWEAF 292
Query: 298 LQATSSAEKKVKTKNSVPLSLSSIYEEVIKSEAGRNMTLDHVRASLVQL----------- 346
+A + +V + I E V + E G +MTLDH+ + L L
Sbjct: 293 FEANVTNND----NKTVTSPIDGILERVGQKEGGMSMTLDHITSVLNDLECTSTANNPEE 348
Query: 347 ---DFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAP 403
D K++E +N+E+ES+V K++G++AY IFRLL K G +ETD+I+D T ++K+
Sbjct: 349 FTFDLNKLVETCRNDEIESLVKKKHGQEAYTIFRLLLKQGSPVETDEITDRTILDKQVVH 408
Query: 404 KILYKLWKDGYLLMEKL---VVTGARQSQFLLWKVNRQILWKHVLDEMFHAALNLSLRVS 460
+ LYKLWKD Y+ E++ TG +QF +W+V + I +H +D ++HAALNL V+
Sbjct: 409 ETLYKLWKDEYIDSERVPSTSATGTGSAQFFVWRV-KNIYREHFMDNLYHAALNLRQMVN 467
Query: 461 YELDREKELLNLPADKRTGPLQDRYNRIRKVRILLESSQMKLDDAILLFHDF 512
Y ELL L K L++R N +L + + D++++LFHDF
Sbjct: 468 Y----MAELL-LEGSKDEIKLRNRKN-------ILILALTRHDESLMLFHDF 507
>gi|168046248|ref|XP_001775586.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162673004|gb|EDQ59533.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 520
Score = 324 bits (831), Expect = 6e-86, Method: Compositional matrix adjust.
Identities = 193/532 (36%), Positives = 307/532 (57%), Gaps = 57/532 (10%)
Query: 24 KVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQPDGFADGPKANT 83
KV +CL+ +GPL ++ R++EL+ +K++LLVL+Q +CVQA+ E + P+ +T
Sbjct: 3 KVVKCLVYRGPLALADIARFSELNPSTLKSSLLVLVQHSCVQAYKVEHEGVGSAPPRVST 62
Query: 84 QYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTLKQMFDRAKSSEKEGN 143
YV L DNILHR+RF KFL + ++ ++ LV+GLLEHGRLTL+Q+ R ++ K G
Sbjct: 63 SYVPLCDNILHRMRFPKFLLAVREDLGEEVGSLVEGLLEHGRLTLEQITQR--TAAKAGK 120
Query: 144 LVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEGPARKKGSKSAKKIGE----PET 199
V + ++ET KLV A ++ERCPA+EP L P P +K +AK G +T
Sbjct: 121 KV-VKGVKETFAKLVAARFIERCPAAEPSLQPKDSNVEPPKKVPRGAAKARGPILSAQDT 179
Query: 200 IE---QQVVEAALPMEAMRFSV---VTNVESDVGEKEKNSNNVTPGEKRKHDVLELDECG 253
+ Q++++AA P E RF + + + + + + E + P ++ +D+L
Sbjct: 180 VSEVVQRILKAAAPDETDRFRLPISMAGMSAPIVDNETTDPSSLP--QKVNDIL------ 231
Query: 254 VADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQATSSAEKKVKTKNS 313
DE+ V++R NFE F+R+LRH+ C+D VR LD GAA +LSAMLQAT + E + +S
Sbjct: 232 -IDEKEVLWRVNFEQFLRKLRHQTCVDMVRTRLDAGAAIILSAMLQATGNQETSARQHHS 290
Query: 314 VPLSLSSIYEEVIKSEAGRNMTLDHVRASLVQL--------------------DFEKIIE 353
VPLS+ +I + V + G++MTL+ +R + QL + IIE
Sbjct: 291 VPLSMDAITQAVRSTPDGQHMTLERIRGLVAQLASDGVGFLAKAGEGGNSYAINMHNIIE 350
Query: 354 IAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDG 413
Q EVE +V +R+GR+ RI+RLL+ G+ LE +I + K+ ++LY+L K+
Sbjct: 351 ARQRNEVEGIVLQRFGRECCRIYRLLAIKGQ-LEQKQIGERAMA-PKNVKELLYRLLKEQ 408
Query: 414 YLLMEKLVVTGARQ---SQFLLWKVNRQILWKHVLDEMFHAALNLSLRVSYELDREKEL- 469
Y+ +++ + + LWKVN + + VLD+++HAA NL LR ++E+ +E+E+
Sbjct: 409 YVQVQQEIAKTSEHIASKSIYLWKVNYRAVLYRVLDDLYHAATNLCLRHAHEIQKEQEVG 468
Query: 470 ---------LNLPADKRTGPLQDRYNRIRKVRILLESSQMKLDDAILLFHDF 512
+ P + QD+ RI ++ +L++S +KLDDAILLFHDF
Sbjct: 469 LFMITINTYTHPPLSQAAPAQQDQVKRISRITKILDASLLKLDDAILLFHDF 520
>gi|414881486|tpg|DAA58617.1| TPA: hypothetical protein ZEAMMB73_769576 [Zea mays]
gi|414881487|tpg|DAA58618.1| TPA: hypothetical protein ZEAMMB73_769576 [Zea mays]
gi|414881488|tpg|DAA58619.1| TPA: hypothetical protein ZEAMMB73_769576 [Zea mays]
Length = 506
Score = 323 bits (829), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 202/532 (37%), Positives = 312/532 (58%), Gaps = 46/532 (8%)
Query: 1 MLTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQ 60
M++++G AV++I++HFG +V+KVC CLLR G L+ Q++ R ELS QVKN+LL+LIQ
Sbjct: 1 MVSQHGILLAVNIISDHFGPIVSKVCGCLLRHGALSLQDIVRRLELSPGQVKNSLLILIQ 60
Query: 61 QNCVQAFTTEQPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGL 120
NCVQA+T+ P G D + T Y+ +FDN+LHR+RF+KFL+++ + + V L++GL
Sbjct: 61 HNCVQAYTS--PRGAGD--RTVTLYLAIFDNVLHRLRFSKFLSVVRVDIPESEV-LLEGL 115
Query: 121 LEHGRLTLKQMFDRA--KSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISE 178
L++GRLT +Q+ +R K SE + L + +R KLV AHYVERCP EP P++
Sbjct: 116 LQNGRLTFEQLVERTIFKVSE-DSPLPTREEVRMNFNKLVYAHYVERCPKPEPFFDPLAV 174
Query: 179 EEGPARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTP 238
E+ + +K ++ K + ++EQ+VV A +A RFS + D K+ ++
Sbjct: 175 EQPTSTRK--RAPKTVEAVLSLEQKVVCTAALSDAERFSEIPYF-MDGSSSAKDGHHAVA 231
Query: 239 GEKRKHDVLELDE-CGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAM 297
G KRKH+ LE+DE + E V++R NFE FI L+ K C + +A + G + A
Sbjct: 232 GNKRKHETLEVDEDDSIIAESEVLWRINFERFIFCLKKKFCAERKKAKMRLGTLAIWEAF 291
Query: 298 LQATSSAEKKVKTKNSVPLSLSSIYEEVIKSEAGRNMTLDHVRASLVQL----------- 346
+A + +V + I E V + E G +MTLDH+ + L L
Sbjct: 292 FEANVTNND----NKTVTSPIDGILERVGQKEGGMSMTLDHITSVLNDLECTSTANNPEE 347
Query: 347 ---DFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAP 403
D K++E +N+E+ES+V K++G++AY IFRLL K G +ETD+I+D T ++K+
Sbjct: 348 FTFDLNKLVETCRNDEIESLVKKKHGQEAYTIFRLLLKQGSPVETDEITDRTILDKQVVH 407
Query: 404 KILYKLWKDGYLLMEKL---VVTGARQSQFLLWKVNRQILWKHVLDEMFHAALNLSLRVS 460
+ LYKLWKD Y+ E++ TG +QF +W+V + I +H +D ++HAALNL V+
Sbjct: 408 ETLYKLWKDEYIDSERVPSTSATGTGSAQFFVWRV-KNIYREHFMDNLYHAALNLRQMVN 466
Query: 461 YELDREKELLNLPADKRTGPLQDRYNRIRKVRILLESSQMKLDDAILLFHDF 512
Y ELL L K L++R N +L + + D++++LFHDF
Sbjct: 467 Y----MAELL-LEGSKDEIKLRNRKN-------ILILALTRHDESLMLFHDF 506
>gi|115439167|ref|NP_001043863.1| Os01g0679000 [Oryza sativa Japonica Group]
gi|56202140|dbj|BAD73473.1| RNA polymerase III subunit-like protein [Oryza sativa Japonica
Group]
gi|113533394|dbj|BAF05777.1| Os01g0679000 [Oryza sativa Japonica Group]
gi|215765022|dbj|BAG86719.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 506
Score = 322 bits (825), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 202/531 (38%), Positives = 302/531 (56%), Gaps = 44/531 (8%)
Query: 1 MLTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQ 60
M++++G AV +I++HFG LV+KVC CLLR G L Q + R ELS QVKN+LLVLIQ
Sbjct: 1 MVSQHGILLAVAIISDHFGPLVSKVCRCLLRHGALPLQEIVRRLELSPGQVKNSLLVLIQ 60
Query: 61 QNCVQAFTTEQPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGL 120
NCVQAF P G +G K T Y+ +FDNI+HR RF+KFL+I+ + + L++GL
Sbjct: 61 HNCVQAFNA--PRG--NGDKTVTHYLAIFDNIVHRQRFSKFLSIIRADIPES-EALLEGL 115
Query: 121 LEHGRLTLKQMFDRAKSSEKEGNLVDL-DSLRETLVKLVTAHYVERCPASEPLLMPISEE 179
L++GRLT Q+ +R S EG++ + +R KLV AHYVERCP EP P+ +E
Sbjct: 116 LQNGRLTFGQLVERTISKVPEGSITPAREEIRMNFNKLVFAHYVERCPKPEPFFDPLVDE 175
Query: 180 EGPARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPG 239
+ + +K ++ K + +I+++VV A +A RFS + + D + + G
Sbjct: 176 QSTSSRK--RAPKTVEIALSIDKKVVNTAALSDAERFSEIPYIMEDASNANDSPRSSISG 233
Query: 240 EKRKHDVLELD---ECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSA 296
KRKH+ LE D + +A E V++RANFE F L+ K C D + L G + A
Sbjct: 234 AKRKHNALEGDAELDSTIA-ENEVLWRANFEKFTFCLKKKFCADRKKPKLKVGTHPIWEA 292
Query: 297 MLQATSSAEKKVKTKNSVPLSLSSIYEEVIKSEAGRNMTLDHVRASLVQ----------- 345
+A+ + NSV ++ I E + + E G +MTLDH+ L +
Sbjct: 293 FFEASLME----RDNNSVTSPINGIMERLGQKEGGTSMTLDHITRVLEELNCSPSSEDPD 348
Query: 346 ---LDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDA 402
LD +I+E ++NEE+ES+V K+YG++A+ IFRLL + +ETDKI DTT ++K+
Sbjct: 349 SFILDLSRIVEASRNEEIESLVRKKYGQEAFTIFRLLVRERGPVETDKIIDTTILDKQIV 408
Query: 403 PKILYKLWKDGYLLMEKLVV-TGARQSQFLLWKVNRQILWKHVLDEMFHAALNLSLRVSY 461
LYKLWKD Y+ E+++ TG +Q+ +W+V + + +D + HAALNL V+Y
Sbjct: 409 HGTLYKLWKDDYIDTERILSGTGTGNTQYFVWRV-KNTFREQFIDNLCHAALNLRQMVNY 467
Query: 462 ELDREKELLNLPADKRTGPLQDRYNRIRKVRILLESSQMKLDDAILLFHDF 512
ELL L K L++R N +L + + DD+++LF DF
Sbjct: 468 ----IAELL-LEGSKDDTKLRNRKN-------ILILALTRHDDSLMLFQDF 506
>gi|300681505|emb|CBH32599.1| RNA polymerase III subunit RPC82 domain containing protein,
expressed [Triticum aestivum]
Length = 502
Score = 311 bits (798), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 193/529 (36%), Positives = 294/529 (55%), Gaps = 44/529 (8%)
Query: 1 MLTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQ 60
M++++G A +I++HFG LVAKVC+CLLR G L + R +L QVKN+LLVLIQ
Sbjct: 1 MVSQHGILLAAGLISDHFGPLVAKVCDCLLRHGALQLTEIVRRLKLPQGQVKNSLLVLIQ 60
Query: 61 QNCVQAFTTEQPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGL 120
NCVQAF++ + G + T Y+ +FDN+LHR+RF+KF++I+ + + L++GL
Sbjct: 61 HNCVQAFSSPR------GDRTITLYLAIFDNVLHRLRFSKFISIIRADIPES-EALIEGL 113
Query: 121 LEHGRLTLKQMFDRAKSSEKEGNLVDL-DSLRETLVKLVTAHYVERCPASEPLLMPISEE 179
L++GRLT Q+ R S EG + + +R +LV A YVERCP +EP P +E
Sbjct: 114 LQNGRLTFDQLVGRTISKVPEGTIRPAREEIRMNFNRLVYARYVERCPKAEPYFNPQEDE 173
Query: 180 EGP-ARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTP 238
+ AR++ K+A+++ ++EQ+VV A + RFS + D + +N
Sbjct: 174 QSTGARRRVPKTAEEV---LSLEQKVVNTATLSDPERFSEIPYSMEDASKTNDCPHNAVA 230
Query: 239 GEKRKHDVLELDE--CGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSA 296
G KRKH E+DE E V++R NFE FI L+ K C D + L G + +
Sbjct: 231 GAKRKHGAFEVDEELNSTIAENEVLWRVNFEKFIFCLKKKFCADRKKPKLKVGTHPIWES 290
Query: 297 MLQATSSAEKKVKTKNSVPLSLSSIYEEVIKSEAGRNMTLDHVRASLVQL---------- 346
+A K NSV S++ I E++ + E G M++ ++ L+ L
Sbjct: 291 FFEANLPD----KDTNSVTSSINGILEKLGQKEGGAAMSIGDIKPVLLDLQCTTSDGEEF 346
Query: 347 --DFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPK 404
D K++E +NEE+ES+V K+YG++A+ IFRLL G +ETD+I DTT ++K+
Sbjct: 347 TFDLRKMVEACRNEEIESLVKKKYGQEAFTIFRLLVTQGCAVETDQIIDTTILDKQIVHS 406
Query: 405 ILYKLWKDGYLLMEKLV-VTGARQSQFLLWKVNRQILWKHVLDEMFHAALNLSLRVSYEL 463
LYKLW DGY+ EK+ G +QF +W+ + + +D ++HAALNL V+Y
Sbjct: 407 TLYKLWNDGYIDTEKIASAAGTGYAQFFVWRA-KNTFREQFIDNLYHAALNLRQMVNY-- 463
Query: 464 DREKELLNLPADKRTGPLQDRYNRIRKVRILLESSQMKLDDAILLFHDF 512
ELL L K L++R N +L + + DD+++LFHDF
Sbjct: 464 --IAELL-LEGSKDETKLRNRKN-------ILILALTRHDDSLMLFHDF 502
>gi|357135934|ref|XP_003569562.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC3-like
[Brachypodium distachyon]
Length = 505
Score = 311 bits (796), Expect = 6e-82, Method: Compositional matrix adjust.
Identities = 200/531 (37%), Positives = 299/531 (56%), Gaps = 45/531 (8%)
Query: 1 MLTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQ 60
M++++G AV +I++HFG LVAKVC+CLLR G L+ Q + R ELS QVKN+LLVLIQ
Sbjct: 1 MVSQHGILLAVGIISDHFGPLVAKVCDCLLRHGELSLQEIVRRLELSPGQVKNSLLVLIQ 60
Query: 61 QNCVQAFTTEQPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGL 120
NCVQAF+ P G + T Y+ +FDN+LHR+RF+KFL+++ + + V L++GL
Sbjct: 61 HNCVQAFSA--PKG---RDRTVTLYLAIFDNVLHRLRFSKFLSVIRADIPESEV-LIEGL 114
Query: 121 LEHGRLTLKQMFDRAKSSEKEGNLVDL-DSLRETLVKLVTAHYVERCPASEPLLMP-ISE 178
L++GRLT Q+ R S EG++ + +R L KLV AH+VERCP EP + P + +
Sbjct: 115 LQNGRLTFDQLVGRTISKVPEGSIRPAREEIRMNLNKLVHAHFVERCPKPEPFIDPLVVQ 174
Query: 179 EEGPARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTP 238
+ +R++ K+ +K+ ++EQ++V A +A RFS + + D + S +
Sbjct: 175 QPTSSRRRAPKNFEKVI---SLEQKIVNTADLSDAERFSEIPYIIEDASDVNGCSRDPVD 231
Query: 239 GEKRKHDVLELDE--CGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSA 296
KRK E+DE E V++RANFE F L+ K C D + L G + +
Sbjct: 232 SAKRKRGAFEVDEELNSTIAENEVLWRANFEQFTFCLKKKFCADRKKLKLKVGTHPIWES 291
Query: 297 MLQATSSAEKKVKTKNSVPLSLSSIYEEVIKSEAGRNMTLDHVRASLVQL---------- 346
+A + K +SV ++ I E + + E G +MTLD V L L
Sbjct: 292 FCEANLTE----KDTDSVTSPINGILERLRQKEGGASMTLDQVTRVLEDLQCTTSNENPE 347
Query: 347 ----DFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDA 402
D K++E +NEE+ES+V K+YG+ A+ IFRLL G +ETD+I DTT ++K+
Sbjct: 348 AYTFDLRKMVESCRNEEIESLVKKKYGQAAFTIFRLLVTQGGPVETDQIIDTTILDKQIV 407
Query: 403 PKILYKLWKDGYLLMEKL-VVTGARQSQFLLWKVNRQILWKHVLDEMFHAALNLSLRVSY 461
LYKLWKD Y+ EK+ V G +QF +W+ + + +D ++HAALNL V+Y
Sbjct: 408 HSTLYKLWKDDYVDTEKISSVAGTGYAQFYVWRA-KSTFREQFIDNLYHAALNLRQMVNY 466
Query: 462 ELDREKELLNLPADKRTGPLQDRYNRIRKVRILLESSQMKLDDAILLFHDF 512
ELL L K L++R N +L + + DD+++LFHDF
Sbjct: 467 ----IAELL-LEGSKDDTKLRNRKN-------ILILALTRHDDSLMLFHDF 505
>gi|242053989|ref|XP_002456140.1| hypothetical protein SORBIDRAFT_03g031160 [Sorghum bicolor]
gi|241928115|gb|EES01260.1| hypothetical protein SORBIDRAFT_03g031160 [Sorghum bicolor]
Length = 506
Score = 309 bits (792), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 197/531 (37%), Positives = 307/531 (57%), Gaps = 44/531 (8%)
Query: 1 MLTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQ 60
M++++G AV++I++HFG +V+KVC CLLR G L+ + R ELS QVKN+LL+LIQ
Sbjct: 1 MVSQHGILLAVNIISDHFGPIVSKVCGCLLRHGALSLLEIGRRLELSPAQVKNSLLILIQ 60
Query: 61 QNCVQAFTTEQPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGL 120
NCVQA+T+ P G G K T Y+ +FDN+LHR+RF+KFL+++ + + V L++GL
Sbjct: 61 HNCVQAYTS--PRG--GGDKTVTLYLAIFDNVLHRLRFSKFLSVVRVDIPESEV-LLEGL 115
Query: 121 LEHGRLTLKQMFDRAKSSEKEGN-LVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEE 179
L++GRLT +Q+ +R EG+ L + +R KLV AHYVERCP SEP P++ E
Sbjct: 116 LQNGRLTFEQLVERTIFKVPEGSPLPTREEIRMNFNKLVYAHYVERCPKSEPFFDPLAVE 175
Query: 180 EGPARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPG 239
+ + +K ++ K + ++EQ+VV A +A RFS + + + ++ G
Sbjct: 176 QPTSTRK--RAPKIVEAVLSLEQKVVSTAALSDAERFSQIPYF-MEGSSSANDGHHAVAG 232
Query: 240 EKRKHDVLELD-ECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAML 298
KRKH+ LE+D E + E ++R NFE FI L+ K C + +A + G + A
Sbjct: 233 NKRKHEALEVDEEDSIIAESEFLWRINFERFIFCLKKKFCAERKKAKMRLGTLAIWEAFF 292
Query: 299 QATSSAEKKVKTKNSVPLSLSSIYEEVIKSEAGRNMTLDHVRASLVQL------------ 346
+A + +V + I E V + E G +MTLD + + L L
Sbjct: 293 EANVTN----NDNKTVTSPIDGILERVGQKEGGTSMTLDQIISVLNDLECTSTTNNPEEF 348
Query: 347 --DFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPK 404
D K++E +N+E+ES+V K++G++AY IFRLL K G +ETD+I+D T ++K+ +
Sbjct: 349 TFDLNKLVETCRNDEIESLVKKKHGQEAYTIFRLLLKQGCPVETDEITDRTILDKQVVHE 408
Query: 405 ILYKLWKDGYLLMEKL---VVTGARQSQFLLWKVNRQILWKHVLDEMFHAALNLSLRVSY 461
LYKLWKD Y+ E++ TG +QF +W+V + I +H +D ++HAALNL ++Y
Sbjct: 409 TLYKLWKDEYIDSERVPSTSGTGTGSTQFFVWRV-KNIYREHFMDHLYHAALNLRQMINY 467
Query: 462 ELDREKELLNLPADKRTGPLQDRYNRIRKVRILLESSQMKLDDAILLFHDF 512
ELL L K L++R N +L + + D++++LFHDF
Sbjct: 468 ----MAELL-LEGSKDEIKLRNRKN-------ILVLALTRHDESLMLFHDF 506
>gi|218188842|gb|EEC71269.1| hypothetical protein OsI_03266 [Oryza sativa Indica Group]
Length = 476
Score = 307 bits (786), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 194/517 (37%), Positives = 292/517 (56%), Gaps = 46/517 (8%)
Query: 1 MLTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQ 60
M++++G AV +I++HFG LV+KVC CLLR G L Q + R ELS QVKN+LLVLIQ
Sbjct: 1 MVSQHGILLAVAIISDHFGSLVSKVCRCLLRHGALPLQEIVRRLELSPGQVKNSLLVLIQ 60
Query: 61 QNCVQAFTTEQPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGL 120
NCVQAF P G +G K T Y+ +FDNI+HR RF+KFL+I+ + + L++GL
Sbjct: 61 HNCVQAFNA--PRG--NGDKTVTHYLAIFDNIVHRQRFSKFLSIIRADIPESEA-LLEGL 115
Query: 121 LEHGRLTLKQMFDRAKSSEKEGNLVDL-DSLRETLVKLVTAHYVERCPASEPLLMPISEE 179
L++GRLT Q+ +R S EG++ + +R KLV AHYVERCP EP P+ +E
Sbjct: 116 LQNGRLTFGQLVERTISKVPEGSITPAREEIRMNFNKLVFAHYVERCPKPEPFFDPLVDE 175
Query: 180 EGPARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPG 239
+ + +K ++ K + +I+++VV +A +A RFS + + D + + G
Sbjct: 176 QSTSSRK--RAPKTVEIALSIDKKVVNSAALSDAERFSEIPYIMEDASNANDSPRSSISG 233
Query: 240 EKRKHDVLELD---ECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSA 296
KRKH+ LE D + +A E V++RANFE F L+ K C D + L G + A
Sbjct: 234 AKRKHNALEGDAELDSTIA-ENEVLWRANFEKFTFCLKKKFCADRKKPKLKVGTHPIWEA 292
Query: 297 MLQATSSAEKKVKTKNSVPLSLSSIYEEVIKSEAGRNMTLDHVRASLVQLDFEKIIEIAQ 356
+A+ + NSV ++ I E + + E D +I+E ++
Sbjct: 293 FFEASLME----RDNNSVTSPINGIMERLGQKEG----------------DLSRIVEASR 332
Query: 357 NEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLL 416
NEE+ES+V K+YG++A+ IFRLL + +ETDKI DTT ++K+ LYKLWKD Y+
Sbjct: 333 NEEIESLVRKKYGQEAFTIFRLLVRERGPVETDKIIDTTILDKQIVHGTLYKLWKDDYID 392
Query: 417 MEKLVV-TGARQSQFLLWKVNRQILWKHVLDEMFHAALNLSLRVSYELDREKELLNLPAD 475
E+++ TG +Q+ +W+V + + +D + HAALNL V+Y ELL L
Sbjct: 393 TERILSGTGTGNTQYFVWRV-KNTFREQFIDNLCHAALNLRQMVNY----IAELL-LEGS 446
Query: 476 KRTGPLQDRYNRIRKVRILLESSQMKLDDAILLFHDF 512
K L++R N +L + + DD+++LF DF
Sbjct: 447 KDDTKLRNRKN-------ILILALTRHDDSLMLFQDF 476
>gi|326514466|dbj|BAJ96220.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 490
Score = 295 bits (754), Expect = 5e-77, Method: Compositional matrix adjust.
Identities = 186/506 (36%), Positives = 278/506 (54%), Gaps = 42/506 (8%)
Query: 24 KVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQPDGFADGPKANT 83
KVC+CLLR+G L Q + R L QVKN+LLVLIQ NCVQAF++ P G + T
Sbjct: 10 KVCDCLLRQGALQLQEIVRRLNLPPGQVKNSLLVLIQHNCVQAFSSPSPRG----DRTMT 65
Query: 84 QYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTLKQMFDRAKSSEKEGN 143
Y+ +F+N+LHR+RF+KF++++ + + L++GLL++GRLT Q+ R S EG
Sbjct: 66 LYLTIFNNVLHRLRFSKFISVIRADIPES-EALIEGLLQNGRLTFDQLVGRTISKVPEGT 124
Query: 144 LVDL-DSLRETLVKLVTAHYVERCPASEPLLMPISEEEGP-ARKKGSKSAKKIGEPETIE 201
+ + +R +LV+A YVERCP +EP P +E+ ARK+ K+A+++ ++E
Sbjct: 125 IRPAREEIRMNFNRLVSARYVERCPKAEPHFNPQEDEQSTTARKRAPKTAEEV---LSLE 181
Query: 202 QQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGEKRKHDVLELDE--CGVADEQS 259
Q+VV A + RFS + D + +NV G KRKH E+DE E
Sbjct: 182 QKVVNTATLSDPERFSEIPYSMEDASKTNDRPHNVVAGAKRKHGAFEVDEELNSTIAENE 241
Query: 260 VVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQATSSAEKKVKTKNSVPLSLS 319
V++R NFE FI L+ K C D + L G + + +A + K NSV S+
Sbjct: 242 VLWRVNFEKFIFCLKKKFCADRKKPKLKVGTHPIWESFFEANLTD----KDTNSVTSSIG 297
Query: 320 SIYEEVIKSEAGRNMTLDHVRASLVQL------------DFEKIIEIAQNEEVESVVSKR 367
I E++ + E G M++ ++ L L D K+IE +NEE+ES+V K+
Sbjct: 298 GILEKLGQKEGGAAMSIGQIQPVLEDLQCTTSTGEEFTFDLHKMIEACRNEEIESLVKKK 357
Query: 368 YGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLV-VTGAR 426
YG++A+ IFRLL G +ETD+I DTT ++K+ LYKLW DGY+ EK+ G
Sbjct: 358 YGQEAFTIFRLLVTQGCAVETDQIIDTTILDKQIVHSTLYKLWNDGYIDTEKIASAAGTG 417
Query: 427 QSQFLLWKVNRQILWKHVLDEMFHAALNLSLRVSYELDREKELLNLPADKRTGPLQDRYN 486
+QF +W+ + + +D ++HAALNL V+Y ELL L K L++R N
Sbjct: 418 YAQFFVWRA-KNTFREQFVDNLYHAALNLRQMVNY----IAELL-LEGSKDETKLRNRKN 471
Query: 487 RIRKVRILLESSQMKLDDAILLFHDF 512
+L + + DD++LLF DF
Sbjct: 472 -------ILILALTRHDDSLLLFCDF 490
>gi|222619044|gb|EEE55176.1| hypothetical protein OsJ_03008 [Oryza sativa Japonica Group]
Length = 423
Score = 274 bits (701), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 167/450 (37%), Positives = 251/450 (55%), Gaps = 46/450 (10%)
Query: 1 MLTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQ 60
M++++G AV +I++HFG LV+KVC CLLR G L Q + R ELS QVKN+LLVLIQ
Sbjct: 1 MVSQHGILLAVAIISDHFGPLVSKVCRCLLRHGALPLQEIVRRLELSPGQVKNSLLVLIQ 60
Query: 61 QNCVQAFTTEQPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGL 120
NCVQAF P G +G K T Y+ +FDNI+HR RF+KFL+I+ + + L++GL
Sbjct: 61 HNCVQAFNA--PRG--NGDKTVTHYLAIFDNIVHRQRFSKFLSIIRADIPES-EALLEGL 115
Query: 121 LEHGRLTLKQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEE 180
L++G +T + + +R KLV AHYVERCP EP P+ +E+
Sbjct: 116 LQNGSITPAR-----------------EEIRMNFNKLVFAHYVERCPKPEPFFDPLVDEQ 158
Query: 181 GPARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGE 240
+ +K ++ K + +I+++VV A +A RFS + + D + + G
Sbjct: 159 STSSRK--RAPKTVEIALSIDKKVVNTAALSDAERFSEIPYIMEDASNANDSPRSSISGA 216
Query: 241 KRKHDVLELD---ECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAM 297
KRKH+ LE D + +A E V++RANFE F L+ K C D + L G + A
Sbjct: 217 KRKHNALEGDAELDSTIA-ENEVLWRANFEKFTFCLKKKFCADRKKPKLKVGTHPIWEAF 275
Query: 298 LQATSSAEKKVKTKNSVPLSLSSIYEEVIKSEAGRNMTLDHVRASLVQ------------ 345
+A+ + NSV ++ I E + + E G +MTLDH+ L +
Sbjct: 276 FEASLME----RDNNSVTSPINGIMERLGQKEGGTSMTLDHITRVLEELNCSPSSEDPDS 331
Query: 346 --LDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAP 403
LD +I+E ++NEE+ES+V K+YG++A+ IFRLL + +ETDKI DTT ++K+
Sbjct: 332 FILDLSRIVEASRNEEIESLVRKKYGQEAFTIFRLLVRERGPVETDKIIDTTILDKQIVH 391
Query: 404 KILYKLWKDGYLLMEKLVVTGARQSQFLLW 433
LYKLWKD Y+ E+++ + +L+
Sbjct: 392 GTLYKLWKDDYIDTERILSGTGTGTHNILY 421
>gi|302808123|ref|XP_002985756.1| hypothetical protein SELMODRAFT_424745 [Selaginella moellendorffii]
gi|300146665|gb|EFJ13334.1| hypothetical protein SELMODRAFT_424745 [Selaginella moellendorffii]
Length = 521
Score = 259 bits (662), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 190/539 (35%), Positives = 287/539 (53%), Gaps = 46/539 (8%)
Query: 1 MLTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQ 60
M Y K A +I + FGDLV VCECL+ +G L+ + +T L+ Q+ + LLVLIQ
Sbjct: 1 MAAGYAGKLACFLIKDQFGDLVHSVCECLISRGQLSLPEIGSFTLLARPQLASCLLVLIQ 60
Query: 61 QNCVQAFTTEQPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEF-DQQCVELVQG 119
NCVQAF D +A +Y + D+I+ R F F+ ++ ++ + Q EL G
Sbjct: 61 HNCVQAFKVLDEDNL----EARLRYTAIVDHIVLRACFPLFVELIREKTGNDQSEELALG 116
Query: 120 LLEHGRLTLKQMFDR-AKSSEKEGNLVDLDS-LRETLVKLVTAHYVERCPASEPLLMPIS 177
LL+HGRLTL+Q+ R A+ S E D S E L+ VERCP E +L S
Sbjct: 117 LLQHGRLTLEQLIKRDAECSNSE----DAQSQFMEAFTNLLQHKLVERCPRPEAVL-GFS 171
Query: 178 EEEGPAR--KKGSKSAKKIGEPETIEQQ---VVEAALPMEAMRFSVVTNVESDVGEKEKN 232
+ G R KK S+KK P E Q V+ AA PMEA RF + + +++
Sbjct: 172 DNAGDGRPAKKARGSSKKRSLPLNFETQVRRVLAAAAPMEAERFRGPSRW---IMDEDAA 228
Query: 233 SNNVTPGEKRKHDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAAN 292
++ + GEKRKH L + DE+ V++R NFE ++ LRHK C HV A
Sbjct: 229 ASTPSTGEKRKHGALW--DSSSMDEKEVLWRVNFEECVKLLRHKACACHVNFSFGSDAKT 286
Query: 293 VLSAMLQATSSAEKKVKTKNSVPLSLSSIY-------EEVIKSEAGRNMTLDHVRA---- 341
V+ AML+AT E VK S L+L+ I V+++ R + + +
Sbjct: 287 VVEAMLEATRKTETTVKAAFSDALTLNDILILRSDWTAPVVRNALKRMVEEGFINSVGDA 346
Query: 342 -SLVQLDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKK 400
S + +KI+E+A+ EVES+VS+R+G+ + RI RLLSK G E IS+ + K
Sbjct: 347 GSHYTVAMQKIVELARKTEVESIVSQRFGKPSSRILRLLSKKGG-SEQKAISEKCLIPDK 405
Query: 401 DAPKILYKLWKDGYLLMEKLVVTGARQS---QFLLWKVNRQILWKHVLDEMFHAALNLSL 457
+A ++LY+L K+ Y+ ++++ + ++ F LW V+ L VL++M+HAA NL
Sbjct: 406 EAWQLLYQLMKERYIELQEVPKSAGDRAPARTFYLWHVDFSKLSSVVLEDMYHAAYNLHR 465
Query: 458 RVSYELDREKELLNLPADKRTGPL----QDRYNRIRKVRILLESSQMKLDDAILLFHDF 512
++ + L+ EKELL +P TG L Q + +R++ + +LE S KL + I+L+ DF
Sbjct: 466 QIEHRLEHEKELLIIPT---TGSLSNEQQQKLDRLQSIVKILEVSIFKLMNTIMLY-DF 520
>gi|147817006|emb|CAN62168.1| hypothetical protein VITISV_005985 [Vitis vinifera]
Length = 721
Score = 258 bits (658), Expect = 7e-66, Method: Compositional matrix adjust.
Identities = 120/195 (61%), Positives = 157/195 (80%), Gaps = 2/195 (1%)
Query: 1 MLTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQ 60
M T+YG + AVH+I++HFG+LVAKVC+CLLRKG T +V R+TEL +QVK+ +LVLIQ
Sbjct: 1 MATQYGVQLAVHLISSHFGNLVAKVCDCLLRKGTXTLASVIRFTELPPQQVKSCILVLIQ 60
Query: 61 QNCVQAFTTEQPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGL 120
NCVQAF +Q GF + P+ TQY+ LF NILHR+RFAKFL I+S+E D++C E+++GL
Sbjct: 61 HNCVQAFAIQQEVGFGEAPRVVTQYMALFHNILHRMRFAKFLAIVSEELDKECEEILEGL 120
Query: 121 LEHGRLTLKQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEE 180
L+HGRLTL+Q+ DRAKS+++E V D+LRE+ +KLV AH+VERCPASEP L P SEEE
Sbjct: 121 LQHGRLTLEQILDRAKSNQREP--VVQDALRESFLKLVRAHFVERCPASEPFLAPPSEEE 178
Query: 181 GPARKKGSKSAKKIG 195
PARK+G+KSAK+ G
Sbjct: 179 TPARKRGAKSAKQWG 193
Score = 239 bits (609), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 130/213 (61%), Positives = 158/213 (74%), Gaps = 20/213 (9%)
Query: 194 IGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGEKRKHDVLELD-EC 252
+ EP+TIEQ+ + AA PM+A RFSV+ N +DV +S NVT GEKRK D LELD E
Sbjct: 288 VEEPQTIEQRAIAAAAPMDAKRFSVIINTGTDV----DDSPNVTAGEKRKQDALELDKET 343
Query: 253 GVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQATSSAEKKVKTKN 312
G + E+ V++RANFE F+R LRHK CI +V+ LDDGAA VLSAML+AT S EKKVKT+N
Sbjct: 344 GASCEKDVLWRANFEEFVRCLRHKACIANVKTRLDDGAAIVLSAMLEATRSEEKKVKTEN 403
Query: 313 SVPLSLSSIYEEVIKSEAGRNMTLDHVRASLVQL---------------DFEKIIEIAQN 357
SVPLS+ +I+E V+KSEAGR+MTL+ VR SL+QL D + IIE+AQN
Sbjct: 404 SVPLSMDTIFEGVMKSEAGRSMTLERVRGSLIQLGCAPCVRGAAESYSVDLKNIIELAQN 463
Query: 358 EEVESVVSKRYGRDAYRIFRLLSKSGRLLETDK 390
+EVES+ KRYGRDAYRIFRLLSKS RLLETDK
Sbjct: 464 DEVESITLKRYGRDAYRIFRLLSKSCRLLETDK 496
Score = 171 bits (432), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 87/152 (57%), Positives = 107/152 (70%), Gaps = 21/152 (13%)
Query: 382 SGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLME---------------------KL 420
SG +ISDTTFVEKKD KILY+LWKD YL M KL
Sbjct: 570 SGITFYIGEISDTTFVEKKDTAKILYQLWKDEYLQMGGNLFKXIEEDILAIYMIPSVLKL 629
Query: 421 VVTGARQSQFLLWKVNRQILWKHVLDEMFHAALNLSLRVSYELDREKELLNLPADKRTGP 480
+ G+RQSQFLLWKV + LW HVL+EM+H+ALNLSLRV+YEL++E+E++ LP +KR G
Sbjct: 630 NLHGSRQSQFLLWKVTKDTLWGHVLNEMYHSALNLSLRVAYELEQEQEIIQLPREKRVGA 689
Query: 481 LQDRYNRIRKVRILLESSQMKLDDAILLFHDF 512
L +R+ R+RKVRILLESS MKLDDAI+LF+DF
Sbjct: 690 LGNRFERLRKVRILLESSLMKLDDAIMLFNDF 721
>gi|302820283|ref|XP_002991809.1| hypothetical protein SELMODRAFT_430080 [Selaginella moellendorffii]
gi|300140347|gb|EFJ07071.1| hypothetical protein SELMODRAFT_430080 [Selaginella moellendorffii]
Length = 430
Score = 256 bits (653), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 154/442 (34%), Positives = 249/442 (56%), Gaps = 55/442 (12%)
Query: 10 AVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTT 69
A +I + FG+LV ++G L + R+T + + + L LIQ NCVQAF
Sbjct: 7 ACDLINDQFGELV--------QRGSLLLSEIARFTGIDVAPLGDCLKQLIQHNCVQAFRA 58
Query: 70 ---EQPDGFADG----PKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLE 122
++ DG G PK NT Y+++ DN+LHR+RF KF+T++ + + L+ LL+
Sbjct: 59 SVEQEHDGLGAGGRPAPKPNTFYMLILDNVLHRMRFPKFMTLVRDDIGSEAQGLLGALLQ 118
Query: 123 HGRLTLKQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEGP 182
HGRLTL Q+ RA + G++ S+++ V+LV AH++ERCP EP L P++EEE P
Sbjct: 119 HGRLTLDQLLKRAAECAQPGDVEVEMSVKKAFVELVEAHFIERCPLPEPTL-PLAEEEQP 177
Query: 183 ARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGEKR 242
K+ +A +T E++V++AA +A+RF + +++ G+ +++ G KR
Sbjct: 178 -NKRARMTA------QTRERRVLDAAAQSDALRFRLPASLQLQSGDLVTLDDSLITGHKR 230
Query: 243 KHDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQATS 302
K E+D + D++ V++R N+E FIRRLRH+ C+ V + D G VL+ +L +
Sbjct: 231 K----EMDT-TLLDDKDVIWRVNYEEFIRRLRHQACVRLVSSKCDLGCGTVLACILDRSR 285
Query: 303 SAEKKVKTKNSVPLSLSSIYEEVIKSEAGRNMTLDHVRASLVQL---------------- 346
AE+ V+ + S PL + +I E V K+E GR M L+ +R +L+Q+
Sbjct: 286 KAERSVRQRLSSPLEMEAIVEAVRKTEEGRCMPLERIRCALLQMTADGFVVDRAGEASEH 345
Query: 347 ----------DFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTF 396
D KI+++A+ E+E +V +R+GR RIFRLLS GR L+ +ISD +
Sbjct: 346 RALMPLGMFPDMRKILDVARQAEIEGIVLQRFGRKCCRIFRLLSTKGR-LDHKQISDKSL 404
Query: 397 VEKKDAPKILYKLWKDGYLLME 418
V K+A ++L KL K+ ++ +E
Sbjct: 405 VPSKEAWELLSKLVKEHFIELE 426
>gi|302822625|ref|XP_002992969.1| hypothetical protein SELMODRAFT_431118 [Selaginella moellendorffii]
gi|300139169|gb|EFJ05915.1| hypothetical protein SELMODRAFT_431118 [Selaginella moellendorffii]
Length = 430
Score = 251 bits (642), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 153/442 (34%), Positives = 248/442 (56%), Gaps = 55/442 (12%)
Query: 10 AVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTT 69
A +I + FG+LV ++G L + R+T + + + L LIQ NCVQAF
Sbjct: 7 ACDLINDQFGELV--------QRGSLLLSEIARFTGIDVAPLGDCLKQLIQHNCVQAFRA 58
Query: 70 ---EQPDGFADG----PKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLE 122
++ DG G PK NT Y+++ DN+LHR+RF KF+T++ + + L+ LL+
Sbjct: 59 SVEQEHDGLGAGGRPAPKPNTFYMLILDNVLHRMRFPKFMTLVRDDIGSEAQGLLGALLQ 118
Query: 123 HGRLTLKQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEGP 182
HGRLTL Q+ RA + G++ S+++ V+LV AH++ERCP EP L P++EEE P
Sbjct: 119 HGRLTLDQLLKRAAECAQPGDVEVEMSVKKAFVELVEAHFIERCPLPEPTL-PLAEEEQP 177
Query: 183 ARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGEKR 242
K+ +A +T E++V++AA +A+RF + +++ + +++ G KR
Sbjct: 178 -NKRARMTA------QTRERRVLDAAAQSDALRFRLPASLQLQSEDLVTLDDSLITGHKR 230
Query: 243 KHDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQATS 302
K E+D + D++ V++R N+E FIRRLRH+ C+ V + D G VL+ +L +
Sbjct: 231 K----EMDT-TLLDDKDVIWRVNYEEFIRRLRHQACVRLVSSKCDLGCGTVLACILDRSR 285
Query: 303 SAEKKVKTKNSVPLSLSSIYEEVIKSEAGRNMTLDHVRASLVQL---------------- 346
AE+ V+ + S PL + +I E V K+E GR M L+ +R +L+Q+
Sbjct: 286 KAERSVRQRLSSPLEMEAIVEAVRKTEEGRCMPLERIRCALLQMTADGFVVDRAGEASEH 345
Query: 347 ----------DFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTF 396
D KI+++A+ E+E +V +R+GR RIFRLLS GR L+ +ISD +
Sbjct: 346 RALMPLGMFPDMRKILDVARQAEMEGIVLQRFGRKCCRIFRLLSTKGR-LDHKQISDKSL 404
Query: 397 VEKKDAPKILYKLWKDGYLLME 418
V K+A ++L KL K+ ++ +E
Sbjct: 405 VPSKEAWELLSKLVKEHFIELE 426
>gi|302785359|ref|XP_002974451.1| hypothetical protein SELMODRAFT_414649 [Selaginella moellendorffii]
gi|300158049|gb|EFJ24673.1| hypothetical protein SELMODRAFT_414649 [Selaginella moellendorffii]
Length = 504
Score = 239 bits (610), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 171/492 (34%), Positives = 259/492 (52%), Gaps = 38/492 (7%)
Query: 1 MLTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQ 60
M Y K A +I + FGDLV VCECL+ +G L+ + +T L+ + + LLVLIQ
Sbjct: 1 MAAGYAGKLACFLIKDQFGDLVHSVCECLISRGQLSLPEIGSFTLLARPHLASCLLVLIQ 60
Query: 61 QNCVQAFTTEQPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEF-DQQCVELVQG 119
NCVQAF D +A +Y + D+++ R F FL ++ ++ + Q EL G
Sbjct: 61 HNCVQAFKVLDEDNL----EARLRYTAIVDHVVLRACFPLFLELIREKTGNDQSEELALG 116
Query: 120 LLEHGRLTLKQMFDR-AKSSEKEGNLVDLDS-LRETLVKLVTAHYVERCPASEPLLMPIS 177
LL+HGRLTL+Q+ R A+ S E D S E L+ VERCP E +L S
Sbjct: 117 LLQHGRLTLEQLIKRDAECSNSE----DAQSQFMEAFTNLLQHKLVERCPRPEAVL-GFS 171
Query: 178 EEEGPAR--KKGSKSAKKIGEPETIEQQ---VVEAALPMEAMRFSVVTNVESDVGEKEKN 232
+ G R KK S+KK P E Q V+ AA PMEA RF + + +++
Sbjct: 172 DNAGDGRPAKKARGSSKKRSLPLNFETQVRRVLAAAAPMEAERFRGPSRW---IMDEDAA 228
Query: 233 SNNVTPGEKRKHDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAAN 292
++ + EKRKH L + DE+ V++R NFE ++ LRHK C HV A
Sbjct: 229 ASTPSTSEKRKHGALW--DSSSMDEKEVLWRVNFEECVKLLRHKACASHVNFSFGSDAKT 286
Query: 293 VLSAMLQATSSAEKKVKTKNSVPLSLSSIY-------EEVIKSEAGRNMTLDHVRA---- 341
V+ AML+AT E VK S L+L+ I V+++ R + + +
Sbjct: 287 VVEAMLEATRKTETTVKAAFSDALTLNDILILRSDWTAPVVRNALKRMVEEGFINSVGDA 346
Query: 342 -SLVQLDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKK 400
S + +KI+E+A+ EVES+VS+R+G+ + RI RLLSK G E IS+ + K
Sbjct: 347 GSHYTVAMQKIVELARKTEVESIVSQRFGKPSSRILRLLSKKGG-SEQKAISEKCLIPDK 405
Query: 401 DAPKILYKLWKDGYLLMEKLVVTGARQS---QFLLWKVNRQILWKHVLDEMFHAALNLSL 457
+A ++LY+L K+ Y+ ++++ + ++ F LW V+ L VL++M+HAA NL
Sbjct: 406 EAWQLLYQLMKERYIELQEVPKSAGDRAPARTFYLWHVDFSKLSSVVLEDMYHAAYNLHR 465
Query: 458 RVSYELDREKEL 469
++ + L+ EKE+
Sbjct: 466 QIEHRLEHEKEV 477
>gi|56202141|dbj|BAD73474.1| RNA polymerase III subunit-like protein [Oryza sativa Japonica
Group]
Length = 359
Score = 194 bits (494), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 130/375 (34%), Positives = 201/375 (53%), Gaps = 38/375 (10%)
Query: 156 KLVTAHYVERCPASEPLLMPISEEEGPARKKGSKSAKKIGEPETIEQQVVEAALPMEAMR 215
KLV AHYVERCP EP P+ +E+ + +K ++ K + +I+++VV A +A R
Sbjct: 5 KLVFAHYVERCPKPEPFFDPLVDEQSTSSRK--RAPKTVEIALSIDKKVVNTAALSDAER 62
Query: 216 FSVVTNVESDVGEKEKNSNNVTPGEKRKHDVLELD---ECGVADEQSVVYRANFEGFIRR 272
FS + + D + + G KRKH+ LE D + +A E V++RANFE F
Sbjct: 63 FSEIPYIMEDASNANDSPRSSISGAKRKHNALEGDAELDSTIA-ENEVLWRANFEKFTFC 121
Query: 273 LRHKGCIDHVRAHLDDGAANVLSAMLQATSSAEKKVKTKNSVPLSLSSIYEEVIKSEAGR 332
L+ K C D + L G + A +A+ + NSV ++ I E + + E G
Sbjct: 122 LKKKFCADRKKPKLKVGTHPIWEAFFEASLME----RDNNSVTSPINGIMERLGQKEGGT 177
Query: 333 NMTLDHVRASLVQL--------------DFEKIIEIAQNEEVESVVSKRYGRDAYRIFRL 378
+MTLDH+ L +L D +I+E ++NEE+ES+V K+YG++A+ IFRL
Sbjct: 178 SMTLDHITRVLEELNCSPSSEDPDSFILDLSRIVEASRNEEIESLVRKKYGQEAFTIFRL 237
Query: 379 LSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVV-TGARQSQFLLWKVNR 437
L + +ETDKI DTT ++K+ LYKLWKD Y+ E+++ TG +Q+ +W+V +
Sbjct: 238 LVRERGPVETDKIIDTTILDKQIVHGTLYKLWKDDYIDTERILSGTGTGNTQYFVWRV-K 296
Query: 438 QILWKHVLDEMFHAALNLSLRVSYELDREKELLNLPADKRTGPLQDRYNRIRKVRILLES 497
+ +D + HAALNL V+Y ELL L K L++R N +L
Sbjct: 297 NTFREQFIDNLCHAALNLRQMVNY----IAELL-LEGSKDDTKLRNRKN-------ILIL 344
Query: 498 SQMKLDDAILLFHDF 512
+ + DD+++LF DF
Sbjct: 345 ALTRHDDSLMLFQDF 359
>gi|355389059|gb|AER62472.1| hypothetical protein [Eremopyrum triticeum]
Length = 307
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 110/310 (35%), Positives = 164/310 (52%), Gaps = 22/310 (7%)
Query: 116 LVQGLLEHGRLTLKQMFDRAKSSEKEGNLVDL-DSLRETLVKLVTAHYVERCPASEPLLM 174
L++GLL++GRLT Q+ R S EG + + +R +LV A YVERCP +EP
Sbjct: 5 LIEGLLQNGRLTFDQLVGRTISKVPEGTIRPAREEIRMNFNRLVYARYVERCPKAEPYFD 64
Query: 175 PISEEEGPARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSN 234
P +E PAR++ K+A+++ ++EQ+VV A + RFS + D +
Sbjct: 65 PREDESTPARRRVPKTAEEVL---SLEQKVVNTATLSDPERFSEIPYSMEDASKTNDCPR 121
Query: 235 NVTPGEKRKHDVLELDE--CGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAAN 292
N G KRKH E+DE E V++R NFE FI L+ K C D + L G
Sbjct: 122 NAVAGAKRKHGAFEVDEELNSTIAENEVLWRVNFEKFIFCLKKKFCADRKKPKLKVGTHP 181
Query: 293 VLSAMLQATSSAEKKVKTKNSVPLSLSSIYEEVIKSEAGRNMTLDHVRASLVQL------ 346
+ + +A + K NSV SL+ I E++ + E G M++ ++ L L
Sbjct: 182 IWESFFEANLTD----KDTNSVTSSLNGILEKLGQKEGGAAMSIGDIKPVLQDLQCTTSD 237
Query: 347 ------DFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKK 400
D K++E +NEE+ES+V K+YG++A+ IFRLL G +ETD+I DTT ++K+
Sbjct: 238 GEEFTFDLRKMVEACRNEEIESLVKKKYGQEAFTIFRLLVTQGCAVETDQIIDTTILDKQ 297
Query: 401 DAPKILYKLW 410
LYKLW
Sbjct: 298 IVHSTLYKLW 307
>gi|355389043|gb|AER62464.1| hypothetical protein [Taeniatherum caput-medusae]
gi|355389045|gb|AER62465.1| hypothetical protein [Taeniatherum caput-medusae]
Length = 307
Score = 176 bits (447), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 109/310 (35%), Positives = 165/310 (53%), Gaps = 22/310 (7%)
Query: 116 LVQGLLEHGRLTLKQMFDRAKSSEKEGNLVDL-DSLRETLVKLVTAHYVERCPASEPLLM 174
L++GLL++GRLT Q+ R S EG + + +R +LV A YVERCP +EP
Sbjct: 5 LIEGLLQNGRLTFDQLVGRTISKVPEGTIRPAREEIRTNFNRLVYARYVERCPKAEPHFD 64
Query: 175 PISEEEGPARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSN 234
P +E PAR++ K+A+++ ++EQ+VV A + RFS + D + +
Sbjct: 65 PREDESTPARRRVPKTAEEVL---SLEQKVVNTATLSDPERFSEIPYSMEDASKTNDCPH 121
Query: 235 NVTPGEKRKHDVLELDE--CGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAAN 292
N G KRKH E+DE E V++R NFE FI L+ K C D + L G
Sbjct: 122 NAVAGAKRKHGAFEVDEELNSTIAENEVLWRVNFEKFIFCLKKKFCADRKKPKLKVGTHP 181
Query: 293 VLSAMLQATSSAEKKVKTKNSVPLSLSSIYEEVIKSEAGRNMTLDHVRASLVQL------ 346
+ + +A K NSV S++ I E++ + E G M++ ++ L+ L
Sbjct: 182 IWESFFEANLYD----KDTNSVTSSINGILEKLGQKEGGAAMSIGDIKPVLLDLQCTTSD 237
Query: 347 ------DFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKK 400
D K++E +NEE+ES+V K+YG++A+ IFRLL G +ETD+I DTT ++K+
Sbjct: 238 GEEFTFDLHKMVEACRNEEIESLVKKKYGQEAFTIFRLLVTQGCAVETDQIIDTTILDKQ 297
Query: 401 DAPKILYKLW 410
LYKLW
Sbjct: 298 IVHSTLYKLW 307
>gi|355389017|gb|AER62451.1| hypothetical protein [Hordeum vulgare subsp. spontaneum]
Length = 308
Score = 176 bits (445), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 111/311 (35%), Positives = 166/311 (53%), Gaps = 23/311 (7%)
Query: 116 LVQGLLEHGRLTLKQMFDRAKSSEKEGNLVDL-DSLRETLVKLVTAHYVERCPASEPLLM 174
L++GLL++GRLT Q+ R S EG + + +R +LV+A YVERCP +EP
Sbjct: 5 LIEGLLQNGRLTFDQLVGRTISKVPEGTIRPAREEIRMNFNRLVSARYVERCPKAEPHFN 64
Query: 175 PISEEEGP-ARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNS 233
P +E+ ARK+ K+A+++ ++EQ+VV A + RFS + D +
Sbjct: 65 PQEDEQSTTARKRAPKTAEEV---LSLEQKVVNTATLSDPERFSEIPYSMEDASKTNDRP 121
Query: 234 NNVTPGEKRKHDVLELDE--CGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAA 291
+NV G KRKH E+DE E V++R NFE FI L+ K C D + L G
Sbjct: 122 HNVVAGAKRKHGAFEVDEELNSTIAENEVLWRVNFEKFIFCLKKKFCADRKKPKLKVGTH 181
Query: 292 NVLSAMLQATSSAEKKVKTKNSVPLSLSSIYEEVIKSEAGRNMTLDHVRASLVQL----- 346
+ + +A + K NSV S+ I E++ + E G M++ ++ L L
Sbjct: 182 PIWESFFEANLTD----KDTNSVTSSIGGILEKLGQKEGGAAMSIGQIQPVLEDLQCTTS 237
Query: 347 -------DFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEK 399
D K+IE +NEE+ES+V K+YG++A+ IFRLL G +ETD+I DTT ++K
Sbjct: 238 TGEEFTFDLHKMIEACRNEEIESLVKKKYGQEAFTIFRLLVTQGCAIETDQIIDTTILDK 297
Query: 400 KDAPKILYKLW 410
+ LYKLW
Sbjct: 298 QIVHSTLYKLW 308
>gi|355389067|gb|AER62476.1| hypothetical protein [Hordeum bogdanii]
Length = 308
Score = 174 bits (440), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 111/311 (35%), Positives = 166/311 (53%), Gaps = 23/311 (7%)
Query: 116 LVQGLLEHGRLTLKQMFDRAKSSEKEGNLVDL-DSLRETLVKLVTAHYVERCPASEPLLM 174
L++GLL++GRLT Q+ R S EG + + +R +LV+A YVERCP +EP
Sbjct: 5 LIEGLLQNGRLTFDQLVGRTISKVPEGTIRPAREEIRMNFNRLVSARYVERCPKAEPHFN 64
Query: 175 PISEEEG-PARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNS 233
P +E+ AR++ K+A+++ ++EQ+VV A + RFS + D +
Sbjct: 65 PQEDEQSTSARRRVPKTAEEVL---SLEQKVVNTATLSDPERFSEIPYSMEDASKTNDYP 121
Query: 234 NNVTPGEKRKHDVLELDE--CGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAA 291
+NV G KRKH E+DE E V++R NFE FI L+ K C D + L G
Sbjct: 122 HNVVAGAKRKHGAFEVDEELNSTIAENEVLWRVNFEKFIFCLKKKFCADRKKPKLKVGTH 181
Query: 292 NVLSAMLQATSSAEKKVKTKNSVPLSLSSIYEEVIKSEAGRNMTLDHVRASLVQL----- 346
+ + +A+ + K NSV S I E++ + E G M++ +R L L
Sbjct: 182 PIWESFFEASLTD----KDTNSVTSSRDGILEKLGQKEGGAAMSIGQIRPVLEDLQCTTS 237
Query: 347 -------DFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEK 399
D K+IE +NEE+ES+V K+YG++A+ IFRLL G +ETD+I DTT ++K
Sbjct: 238 TGEEFTFDLRKMIEACRNEEIESLVKKKYGQEAFTIFRLLVTQGSAVETDQIIDTTILDK 297
Query: 400 KDAPKILYKLW 410
+ LYKLW
Sbjct: 298 QIVHSTLYKLW 308
>gi|355389063|gb|AER62474.1| hypothetical protein [Henrardia persica]
Length = 308
Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 110/311 (35%), Positives = 166/311 (53%), Gaps = 23/311 (7%)
Query: 116 LVQGLLEHGRLTLKQMFDRAKSSEKEGNLVDL-DSLRETLVKLVTAHYVERCPASEPLLM 174
L++GLL++GRLT Q+ R S EG + + +R +LV AHYVERCP +EP
Sbjct: 5 LIEGLLQNGRLTFDQLVGRTISKVPEGTIRPAREEIRMNFNRLVYAHYVERCPKAEPHFD 64
Query: 175 PISEEEG-PARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNS 233
P +E+ AR++ K+A+++ ++EQ+VV A + RFS + D +
Sbjct: 65 PREDEQSTSARRRVPKTAEEVL---SLEQKVVNIATLSDPERFSEIPYSMEDASKTNDCP 121
Query: 234 NNVTPGEKRKHDVLELDE--CGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAA 291
+N G KRKH E+DE E V++R NFE FI L+ K C D + L G
Sbjct: 122 HNAVAGAKRKHGAFEVDEELNSTIAENEVLWRINFEKFIFCLKKKFCADRKKPKLKVGTH 181
Query: 292 NVLSAMLQATSSAEKKVKTKNSVPLSLSSIYEEVIKSEAGRNMTLDHVRASLVQL----- 346
+ + +A + K NSV S++ I E++ + E G MT+ ++ L L
Sbjct: 182 PIWESFFEANLTD----KDTNSVTSSINGILEKLGQKEGGAAMTIGQIKPVLEDLQCTTS 237
Query: 347 -------DFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEK 399
D K++E +NEE+ES+V K+YG++A+ IFRLL G +ETD+I DTT ++K
Sbjct: 238 DGEEFTFDLHKMVEACRNEEIESLVKKKYGQEAFTIFRLLVTQGCAVETDQIIDTTILDK 297
Query: 400 KDAPKILYKLW 410
+ LYKLW
Sbjct: 298 QIVHSTLYKLW 308
>gi|355389021|gb|AER62453.1| hypothetical protein [Secale cereale]
Length = 308
Score = 172 bits (436), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 108/311 (34%), Positives = 166/311 (53%), Gaps = 23/311 (7%)
Query: 116 LVQGLLEHGRLTLKQMFDRAKSSEKEGNLVDL-DSLRETLVKLVTAHYVERCPASEPLLM 174
L++GLL++GRLT Q+ R S EG + + +R +LV A YVERCP +EP
Sbjct: 5 LIEGLLQNGRLTFDQLVGRTISKVPEGTIRPAREEIRMNFNRLVYARYVERCPKAEPFFN 64
Query: 175 PISEEEG-PARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNS 233
P +E+ AR++ K+A+++ ++EQ+VV A + RFS + D +
Sbjct: 65 PQEDEQSTAARRRVPKTAEEVL---SLEQKVVNTATLSDPERFSEIPYSMEDASKTNDCP 121
Query: 234 NNVTPGEKRKHDVLELDE--CGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAA 291
+N G KRKH E+DE E V++R NFE FI L+ K C D + L G
Sbjct: 122 HNAVVGAKRKHGAFEVDEELNSTIAENEVLWRVNFEKFIFCLKKKFCADRKKPKLKVGTH 181
Query: 292 NVLSAMLQATSSAEKKVKTKNSVPLSLSSIYEEVIKSEAGRNMTLDHVRASLVQL----- 346
+ + +A + K NSV S++ I E++ + E G M++ ++ L+ L
Sbjct: 182 PIWESFFEANLTD----KDTNSVTSSINGILEKLGQKEGGAAMSIGQIKPVLLDLQCTTS 237
Query: 347 -------DFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEK 399
D K++E +NEE+ES+V K+YG++A+ IFRLL G +ETD+I DTT ++K
Sbjct: 238 DGEEYNFDLSKMVEACRNEEIESLVKKKYGQEAFTIFRLLVTQGCAVETDQIIDTTILDK 297
Query: 400 KDAPKILYKLW 410
+ LYKLW
Sbjct: 298 QIVHSTLYKLW 308
>gi|355389031|gb|AER62458.1| hypothetical protein [Pseudoroegneria tauri subsp. libanotica]
Length = 311
Score = 172 bits (435), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 111/314 (35%), Positives = 166/314 (52%), Gaps = 26/314 (8%)
Query: 116 LVQGLLEHGRLTLKQMFDRAKSSEKEGNLVDL-DSLRETLVKLVTAHYVERCPASEPLLM 174
L++GLL++GRLT Q+ R S EG + + +R +LV A YVERCP +EP
Sbjct: 5 LIEGLLQNGRLTFDQLVGRTISKVPEGTIRPAREEIRMNFNRLVHARYVERCPKAEPHFN 64
Query: 175 PISEEEGP-ARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNS 233
P +E+ AR+K K+A+++ ++EQ+VV A + RFS + D +
Sbjct: 65 PQEDEQSTTARRKVPKTAEEVL---SLEQKVVNTATLSDPERFSEIPYSMEDASKTNDCP 121
Query: 234 NNVTPGEKRKHDVLELDE--CGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAA 291
+N G KRKH E+DE E V++R NFE FI L+ K C D + L G
Sbjct: 122 SNAVAGAKRKHGAFEVDEELNSTIAENEVLWRVNFEKFIFCLKKKFCADRKKPKLKVGTH 181
Query: 292 NVLSAMLQATSSAEKKVKTKNSVPLSLSSIYEEVIKSEAGRNMTLDHVRASLVQL----- 346
+ + +A + + NSV S++ I E++ + E MT+DHV+ L L
Sbjct: 182 PIWESFFEANLTD----RDTNSVTSSINRILEKLGQKEGSAAMTVDHVKRVLGDLQCALT 237
Query: 347 ----------DFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTF 396
D K++E +NEE+ES+V K+YG++A+ IFRLL G +ETD+I DTT
Sbjct: 238 NSEDGEAFTFDLRKMVEACRNEEIESLVKKKYGQEAFTIFRLLVTQGCAVETDQIIDTTI 297
Query: 397 VEKKDAPKILYKLW 410
++K+ LYKLW
Sbjct: 298 LDKQIVHSTLYKLW 311
>gi|355389041|gb|AER62463.1| hypothetical protein [Pseudoroegneria spicata]
Length = 311
Score = 170 bits (431), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 110/314 (35%), Positives = 166/314 (52%), Gaps = 26/314 (8%)
Query: 116 LVQGLLEHGRLTLKQMFDRAKSSEKEGNLVDL-DSLRETLVKLVTAHYVERCPASEPLLM 174
L++GLL++GRLT Q+ R S EG + + ++ +LV A YVERCP +EP
Sbjct: 5 LIEGLLQNGRLTFDQLVGRTISKVPEGTIRPAREEIQMNFNRLVHARYVERCPKAEPHFN 64
Query: 175 PISEEEGP-ARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNS 233
P +E+ AR+K K+A+++ ++EQ+VV A + RFS + D +
Sbjct: 65 PQEDEQSTTARRKVPKTAEEVL---SLEQKVVNTATLSDPERFSEIPYSMEDASKTNDCP 121
Query: 234 NNVTPGEKRKHDVLELDE--CGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAA 291
+N G KRKH E+DE E V++R NFE FI L+ K C D + L G
Sbjct: 122 SNAVAGAKRKHGAFEVDEELNSTIAENEVLWRVNFEKFIFCLKKKFCADRKKPKLKVGTH 181
Query: 292 NVLSAMLQATSSAEKKVKTKNSVPLSLSSIYEEVIKSEAGRNMTLDHVRASLVQL----- 346
+ + +A + + NSV S++ I E++ + E MT+DHV+ L L
Sbjct: 182 PIWESFFEANLTD----RDTNSVTSSINRILEKLGQKEGSAAMTVDHVKRVLGDLQCTLT 237
Query: 347 ----------DFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTF 396
D K++E +NEE+ES+V K+YG++A+ IFRLL G +ETD+I DTT
Sbjct: 238 NSEDGEAFTFDLRKMVEACRNEEIESLVKKKYGQEAFTIFRLLVTQGCAVETDQIIDTTI 297
Query: 397 VEKKDAPKILYKLW 410
++K+ LYKLW
Sbjct: 298 LDKQIVHSTLYKLW 311
>gi|355389051|gb|AER62468.1| hypothetical protein [Psathyrostachys juncea]
Length = 312
Score = 170 bits (431), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 110/315 (34%), Positives = 165/315 (52%), Gaps = 27/315 (8%)
Query: 116 LVQGLLEHGRLTLKQMFDRAKSSEKEGNLVDL-DSLRETLVKLVTAHYVERCPASEPLLM 174
L++GLL++GRLT Q+ R S EG + + +R +LV A YVERCP +EP
Sbjct: 5 LIEGLLQNGRLTFDQLVGRTISKVPEGTIRPAREEIRMNFNRLVYARYVERCPKAEPHFD 64
Query: 175 PISEEE-GPARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNS 233
P +EE AR++ K+A+++ ++EQ+VV A + RFS + D +
Sbjct: 65 PREDEERTSARRRVPKTAEEVL---SLEQKVVNTATLSDPERFSEIPYSMEDASKANDCP 121
Query: 234 NNVTPGEKRKHDVLELDE--CGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAA 291
+N G KRKH E+DE E V++R NFE FI L+ K C D + L G
Sbjct: 122 HNAVAGAKRKHGAFEVDEELNSTIAENEVLWRVNFEKFIFCLKKKFCADRKKPKLKVGTH 181
Query: 292 NVLSAMLQATSSAEKKVKTKNSVPLSLSSIYEEVIKSEAGRNMTLDHVRASLVQL----- 346
+ + +A + + NSV S+S I E++ + E MT+D ++ L L
Sbjct: 182 PIWESFFEANLTD----RDTNSVTSSMSGILEKLGQKEGCAAMTVDQIKIVLADLQCTTS 237
Query: 347 -----------DFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTT 395
D K++E +NEE+ES+V K+YG++A+ IFRLL G +ETD+I DTT
Sbjct: 238 TSNEDRDAFTFDLRKMVEACRNEEIESLVKKKYGQEAFTIFRLLVTQGCAVETDQIIDTT 297
Query: 396 FVEKKDAPKILYKLW 410
++K+ LYKLW
Sbjct: 298 ILDKQIVHSTLYKLW 312
>gi|355389025|gb|AER62455.1| hypothetical protein [Aegilops tauschii]
gi|355389027|gb|AER62456.1| hypothetical protein [Aegilops tauschii]
Length = 308
Score = 170 bits (430), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 109/311 (35%), Positives = 164/311 (52%), Gaps = 23/311 (7%)
Query: 116 LVQGLLEHGRLTLKQMFDRAKSSEKEGNLVDL-DSLRETLVKLVTAHYVERCPASEPLLM 174
L++GLL++GRLT Q+ R S EG + + +R KLV A YVERCP +EP
Sbjct: 5 LIEGLLQNGRLTFDQLVGRTISKVPEGTIRPAREEIRMNFNKLVYARYVERCPKAEPYFN 64
Query: 175 PISEEEG-PARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNS 233
P +E+ AR++ K+A+++ ++EQ+VV A + RFS + D +
Sbjct: 65 PQEDEQSTAARRRVPKTAEEVL---SLEQKVVNTATLSDPERFSEIPYGMEDASKTNDCP 121
Query: 234 NNVTPGEKRKHDVLELDE--CGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAA 291
+N G KRKH E+DE E V++R NFE FI L+ K C D + L G
Sbjct: 122 HNAVAGAKRKHGAFEIDEELNSTIAENEVLWRVNFEKFIFCLKKKFCADRKKPKLKVGTH 181
Query: 292 NVLSAMLQATSSAEKKVKTKNSVPLSLSSIYEEVIKSEAGRNMTLDHVRASLVQL----- 346
+ + +A + K NSV S + I E++ + E MT+ ++ L+ L
Sbjct: 182 PIWESFFEANLTD----KDTNSVTSSTNGILEKLGQKEGTAAMTIGDIKPVLLDLQCTTS 237
Query: 347 -------DFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEK 399
D K++E +NEE+ES+V K+YG++A+ IFRLL G +ETD+I DTT ++K
Sbjct: 238 DGEEFTFDLRKMVEACRNEEIESLVKKKYGQEAFTIFRLLVTQGCAVETDQIIDTTILDK 297
Query: 400 KDAPKILYKLW 410
+ LYKLW
Sbjct: 298 QIVHSTLYKLW 308
>gi|355389023|gb|AER62454.1| hypothetical protein [Aegilops longissima]
Length = 308
Score = 169 bits (428), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 109/311 (35%), Positives = 164/311 (52%), Gaps = 23/311 (7%)
Query: 116 LVQGLLEHGRLTLKQMFDRAKSSEKEGNLVDL-DSLRETLVKLVTAHYVERCPASEPLLM 174
L++GLL++GRLT Q+ R S EG + + +R KLV A YVERCP +EP
Sbjct: 5 LIEGLLQNGRLTFDQLVGRTISKVPEGTIRPAREEIRMNFNKLVYARYVERCPKAEPYFN 64
Query: 175 PISEEEG-PARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNS 233
P +E+ AR++ K+A+++ ++EQ+VV A + RFS + D +
Sbjct: 65 PQEDEQSTAARRRVPKTAEEVL---SLEQKVVNTATLSDPERFSEIPYGMEDASKTNDCP 121
Query: 234 NNVTPGEKRKHDVLELDE--CGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAA 291
+N G KRKH E+DE E V++R NFE FI L+ K C D + L G
Sbjct: 122 HNAVAGAKRKHRAFEVDEELNSTIAENEVLWRVNFEKFIFCLKKKFCADRKKPKLKVGTH 181
Query: 292 NVLSAMLQATSSAEKKVKTKNSVPLSLSSIYEEVIKSEAGRNMTLDHVRASLVQL----- 346
+ + +A + K NSV S + I E++ + E MT+ ++ L+ L
Sbjct: 182 PIWESFFEANLTD----KDTNSVTSSTNGILEKLGQKEGTAAMTIGDIKPVLLDLQCTTS 237
Query: 347 -------DFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEK 399
D K++E +NEE+ES+V K+YG++A+ IFRLL G +ETD+I DTT ++K
Sbjct: 238 DGEEFTFDLRKMVEACRNEEIESLVKKKYGQEAFTIFRLLVTQGCAVETDQIIDTTILDK 297
Query: 400 KDAPKILYKLW 410
+ LYKLW
Sbjct: 298 QIVHSTLYKLW 308
>gi|355389049|gb|AER62467.1| hypothetical protein [Psathyrostachys juncea]
Length = 312
Score = 169 bits (427), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 109/315 (34%), Positives = 165/315 (52%), Gaps = 27/315 (8%)
Query: 116 LVQGLLEHGRLTLKQMFDRAKSSEKEGNLVDL-DSLRETLVKLVTAHYVERCPASEPLLM 174
L++GLL++GRLT Q+ R S EG + + +R +LV A YVERCP +EP
Sbjct: 5 LIEGLLQNGRLTFDQLVGRTISKVPEGTIRPAREEIRMNFNRLVYARYVERCPKAEPHFD 64
Query: 175 PISEEE-GPARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNS 233
P +EE AR++ K+A+++ ++EQ+VV A + RFS + D +
Sbjct: 65 PREDEERTSARRRVPKTAEEVL---SLEQKVVNTATLSDPERFSEIPYSMEDASKANDCP 121
Query: 234 NNVTPGEKRKHDVLELDE--CGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAA 291
+N G KRKH E+DE E V++R NFE FI L+ K C D + L G
Sbjct: 122 HNAVAGAKRKHGAFEVDEELNSTIAENEVLWRVNFEKFIFCLKKKFCADRKKPKLKVGTH 181
Query: 292 NVLSAMLQATSSAEKKVKTKNSVPLSLSSIYEEVIKSEAGRNMTLDHVRASLVQL----- 346
+ + +A + + NSV S++ I E++ + E MT+D ++ L L
Sbjct: 182 PIWESFFEANLTD----RDTNSVTSSMNGILEKLGQKEGCAAMTVDQIKIVLADLQCTTS 237
Query: 347 -----------DFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTT 395
D K++E +NEE+ES+V K+YG++A+ IFRLL G +ETD+I DTT
Sbjct: 238 TSSEDRDAFTFDLRKMVEACRNEEIESLVKKKYGQEAFTIFRLLVTQGCAVETDQIIDTT 297
Query: 396 FVEKKDAPKILYKLW 410
++K+ LYKLW
Sbjct: 298 ILDKQIVHSTLYKLW 312
>gi|355389019|gb|AER62452.1| hypothetical protein [Hordeum vulgare subsp. spontaneum]
Length = 302
Score = 165 bits (417), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 106/301 (35%), Positives = 161/301 (53%), Gaps = 23/301 (7%)
Query: 116 LVQGLLEHGRLTLKQMFDRAKSSEKEGNLVDL-DSLRETLVKLVTAHYVERCPASEPLLM 174
L++GLL++GRLT Q+ R S EG + + +R +LV+A YVERCP +EP
Sbjct: 5 LIEGLLQNGRLTFDQLVGRTISKVPEGTIRPAREEIRMNFNRLVSARYVERCPKAEPHFN 64
Query: 175 PISEEEGP-ARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNS 233
P +E+ ARK+ K+A+++ ++EQ+VV A + RFS + D +
Sbjct: 65 PQEDEQSTTARKRAPKTAEEV---LSLEQKVVNTATLSDPERFSEIPYSMEDASKTNDRP 121
Query: 234 NNVTPGEKRKHDVLELDE--CGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAA 291
+NV G KRKH E+DE E V++R NFE FI L+ K C D + L G
Sbjct: 122 HNVVAGAKRKHGAFEVDEELNSTIAENEVLWRVNFEKFIFCLKKKFCADRKKPKLKVGTH 181
Query: 292 NVLSAMLQATSSAEKKVKTKNSVPLSLSSIYEEVIKSEAGRNMTLDHVRASLVQL----- 346
+ + +A + K NSV S+ I E++ + E G M++ ++ L L
Sbjct: 182 PIWESFFEANLTD----KDTNSVTSSIGGILEKLGQKEGGAAMSIGQIQPVLEDLQCTTS 237
Query: 347 -------DFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEK 399
D K+IE +NEE+ES+V K+YG++A+ IFRLL G +ETD+I DTT ++K
Sbjct: 238 TGEEFTFDLHKMIEACRNEEIESLVKKKYGQEAFTIFRLLVTQGCAVETDQIIDTTILDK 297
Query: 400 K 400
+
Sbjct: 298 Q 298
>gi|355389047|gb|AER62466.1| hypothetical protein [Dasypyrum villosum]
Length = 303
Score = 161 bits (408), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 104/301 (34%), Positives = 161/301 (53%), Gaps = 23/301 (7%)
Query: 116 LVQGLLEHGRLTLKQMFDRAKSSEKEGNLVDL-DSLRETLVKLVTAHYVERCPASEPLLM 174
LV+GLL++GRLT Q+ R S EG + + +R +LV A YVERCP +EP
Sbjct: 5 LVEGLLQNGRLTFDQLVGRTISKVPEGTIRPAREEIRMNFNRLVYARYVERCPKAEPYFN 64
Query: 175 PISEEEG-PARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNS 233
P +E+ AR++ K+A+++ ++EQ+VV A + RFS + D +
Sbjct: 65 PQEDEQSTSARRRVPKTAEEVL---SLEQKVVNTATLSDPERFSEIPYSMEDASKTNDCP 121
Query: 234 NNVTPGEKRKHDVLELDE--CGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAA 291
+N G KRKH E+DE E V++R NFE FI L+ K C D + L G
Sbjct: 122 HNAVAGAKRKHGAFEVDEELNSTIAENEVLWRVNFEKFIFCLKKKFCADRKKPKLKVGTH 181
Query: 292 NVLSAMLQATSSAEKKVKTKNSVPLSLSSIYEEVIKSEAGRNMTLDHVRASLVQL----- 346
+ + +A + K NSV S++ I E++ + E G M++ ++ L+ L
Sbjct: 182 PIWESFFEANLTD----KDTNSVTSSINGILEKLGQKEGGAAMSIGDIKPVLLDLQCTTS 237
Query: 347 -------DFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEK 399
D K++E +NEE+ES+V K+YG++A+ IFRLL G +ETD+I DTT ++K
Sbjct: 238 DGEEFTFDLRKMVEACRNEEIESLVKKKYGQEAFTIFRLLVTQGCAVETDQIIDTTILDK 297
Query: 400 K 400
+
Sbjct: 298 Q 298
>gi|355389033|gb|AER62459.1| hypothetical protein [Dasypyrum villosum]
Length = 301
Score = 156 bits (394), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 102/301 (33%), Positives = 158/301 (52%), Gaps = 23/301 (7%)
Query: 116 LVQGLLEHGRLTLKQMFDRAKSSEKEGNLVDL-DSLRETLVKLVTAHYVERCPASEPLLM 174
L++GLL++GRLT Q+ R S EG + + +R +LV A YVERCP EP
Sbjct: 5 LIEGLLQNGRLTXDQLVGRTISKVPEGXIRPAREEIRMNFNRLVYARYVERCPKXEPYFN 64
Query: 175 PISEEEG-PARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNS 233
P +E+ AR++ K+A+++ ++EQ+VV A + RFS + D +
Sbjct: 65 PQEDEQSTSARRRVPKTAEEVL---SLEQKVVNTATLSDPERFSEIPYSMEDASKTNDCP 121
Query: 234 NNVTPGEKRKHDVLELDE--CGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAA 291
+N G KRKH E+DE E V++R NFE FI L+ K C D + L G
Sbjct: 122 HNAVAGAKRKHGAFEVDEELNSTIAENEVLWRVNFEKFIFCLKKKFCADRKKPKLKVGTH 181
Query: 292 NVLSAMLQATSSAEKKVKTKNSVPLSLSSIYEEVIKSEAGRNMTLDHVRASLVQL----- 346
+ + +A + K NSV S++ I E++ + E G M++ ++ L+ L
Sbjct: 182 PIWESFFEANLTD----KDTNSVTSSINGILEKLGQKEGGAAMSIGDIKPVLLDLQCTTS 237
Query: 347 -------DFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEK 399
D K++E EE+ES+V K+YG++A+ IFRLL G +ETD+I DTT ++K
Sbjct: 238 DGEEFTFDLRKMVEACXXEEIESLVKKKYGQEAFTIFRLLVTQGCAVETDQIIDTTILDK 297
Query: 400 K 400
+
Sbjct: 298 Q 298
>gi|355389035|gb|AER62460.1| hypothetical protein [Psathyrostachys juncea]
Length = 292
Score = 153 bits (386), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 100/295 (33%), Positives = 153/295 (51%), Gaps = 27/295 (9%)
Query: 116 LVQGLLEHGRLTLKQMFDRAKSSEKEGNLVDL-DSLRETLVKLVTAHYVERCPASEPLLM 174
L++GLL++GRLT Q+ R S EG + + +R +LV A YVERCP +EP
Sbjct: 5 LIEGLLQNGRLTFDQLVGRTISKVPEGTIRPAREEIRMNFNRLVYARYVERCPKAEPHFD 64
Query: 175 PISEEE-GPARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNS 233
P +EE PAR++ K+A+++ ++EQ+VV A + RFS + D +
Sbjct: 65 PREDEERTPARRRVPKTAEEVL---SLEQKVVNTATLSDPERFSEIPYSMEDASKTNDCP 121
Query: 234 NNVTPGEKRKHDVLELDE--CGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAA 291
+N G KRKH E+DE E V++R NFE FI L+ K C D + L G
Sbjct: 122 HNAVAGAKRKHGAFEVDEELNSTIAENEVLWRVNFEKFIFCLKKKFCADRKKPKLKVGTH 181
Query: 292 NVLSAMLQATSSAEKKVKTKNSVPLSLSSIYEEVIKSEAGRNMTLDHVRASLVQL----- 346
+ + +A + + NSV S++ I E++ + E MT+D ++ L L
Sbjct: 182 PIWESFFEANLTD----RDTNSVTSSMNGILEKLGQKEGCAAMTVDQIKVVLADLQCTTS 237
Query: 347 -----------DFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDK 390
D K++E +NEE+ES+V K+YG++A+ IFRLL G +ETD+
Sbjct: 238 TSSEDRDAFTFDLRKMVEACRNEEIESLVKKKYGQEAFTIFRLLVTQGCAVETDQ 292
>gi|355389065|gb|AER62475.1| hypothetical protein [Triticum monococcum subsp. aegilopoides]
Length = 283
Score = 147 bits (372), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 95/278 (34%), Positives = 145/278 (52%), Gaps = 22/278 (7%)
Query: 148 DSLRETLVKLVTAHYVERCPASEPLLMPISEEEG-PARKKGSKSAKKIGEPETIEQQVVE 206
+ +R KLV A YVERCP +EP P +E+ AR++ K+A+++ +++Q+VV
Sbjct: 13 EEIRMNFNKLVYARYVERCPKAEPYFNPQEDEQSTAARRRVPKTAEEVL---SLKQKVVN 69
Query: 207 AALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGEKRKHDVLELDE--CGVADEQSVVYRA 264
A + RFS + D + +N G KRKH E+DE E V++R
Sbjct: 70 TATLSDPERFSEIPYGMEDASKTNDCPHNAVAGAKRKHGAFEVDEELNSTIAENEVLWRV 129
Query: 265 NFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQATSSAEKKVKTKNSVPLSLSSIYEE 324
NFE FI L+ K C D + L G + + +A + K NSV S + I E+
Sbjct: 130 NFEKFIFCLKKKFCADRKKPKLKVGTHPIWESFFEANLTD----KDTNSVTSSTNGILEK 185
Query: 325 VIKSEAGRNMTLDHVRASLVQL------------DFEKIIEIAQNEEVESVVSKRYGRDA 372
+ + E MT+ ++ L+ L D K++E +NEE+ES+V K+YG++A
Sbjct: 186 LGQKEGTAAMTIGDIKPVLLDLQCTTSDGEEFTFDLRKMVEACRNEEIESLVKKKYGQEA 245
Query: 373 YRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLW 410
+ IFRLL G +ETD+I DTT ++K+ LYKLW
Sbjct: 246 FTIFRLLVTQGCAVETDQIIDTTILDKQIVHSTLYKLW 283
>gi|355389057|gb|AER62471.1| hypothetical protein [Eremopyrum bonaepartis]
Length = 263
Score = 147 bits (370), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 94/270 (34%), Positives = 142/270 (52%), Gaps = 22/270 (8%)
Query: 156 KLVTAHYVERCPASEPLLMPISEEEG-PARKKGSKSAKKIGEPETIEQQVVEAALPMEAM 214
+LV A YVERCP +EP P +E+ AR++ K+A+++ ++EQ+VV A +
Sbjct: 1 RLVYARYVERCPKAEPHFDPREDEQSTSARRRVPKTAEEVL---SLEQKVVNIATLSDPE 57
Query: 215 RFSVVTNVESDVGEKEKNSNNVTPGEKRKHDVLELDE--CGVADEQSVVYRANFEGFIRR 272
RFS + D + +N G KRKH E+DE E V++R NFE FI
Sbjct: 58 RFSEIPYSMEDASKTNDCPHNTVVGAKRKHGAFEVDEELNSTIAENEVLWRINFEKFIFC 117
Query: 273 LRHKGCIDHVRAHLDDGAANVLSAMLQATSSAEKKVKTKNSVPLSLSSIYEEVIKSEAGR 332
L+ K C D + L G + + +A + K N V S++ I E++ + E G
Sbjct: 118 LKKKFCADRKKPKLKVGTHPIWESFFEANLTD----KDTNCVTSSINGILEKLGQKEGGA 173
Query: 333 NMTLDHVRASLVQL------------DFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLS 380
MT+ ++ L L D K++E +NEE+ES+V K+YG++A+ IFRLL
Sbjct: 174 AMTIGQIKPVLEDLQCTTSDGEEFTFDLHKMVEACRNEEIESLVKKKYGQEAFTIFRLLV 233
Query: 381 KSGRLLETDKISDTTFVEKKDAPKILYKLW 410
G +ETD+I DTT ++K+ LYKLW
Sbjct: 234 TQGCAVETDQIIDTTILDKQIVHSTLYKLW 263
>gi|326523087|dbj|BAJ88584.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 278
Score = 147 bits (370), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 101/290 (34%), Positives = 149/290 (51%), Gaps = 32/290 (11%)
Query: 238 PGEKRKHDVLELDE--CGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLS 295
P RKH E+DE E V++R NFE FI L+ K C D + L G +
Sbjct: 6 PEVLRKHGAFEVDEELNSTIAENEVLWRVNFEKFIFCLKKKFCADRKKPKLKVGTHPIWE 65
Query: 296 AMLQATSSAEKKVKTKNSVPLSLSSIYEEVIKSEAGRNMTLDHVRASLVQL--------- 346
+ +A + K NSV S+ I E++ + E G M++ ++ L L
Sbjct: 66 SFFEANLTD----KDTNSVTSSIGGILEKLGQKEGGAAMSIGQIQPVLEDLQCTTSTGEE 121
Query: 347 ---DFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAP 403
D K+IE +NEE+ES+V K+YG++A+ IFRLL G +ETD+I DTT ++K+
Sbjct: 122 FTFDLHKMIEACRNEEIESLVKKKYGQEAFTIFRLLVTQGCAVETDQIIDTTILDKQIVH 181
Query: 404 KILYKLWKDGYLLMEKLV-VTGARQSQFLLWKVNRQILWKHVLDEMFHAALNLSLRVSYE 462
LYKLW DGY+ EK+ G +QF +W+ + + +D ++HAALNL V+Y
Sbjct: 182 STLYKLWNDGYIDTEKIASAAGTGYAQFFVWRA-KNTFREQFVDNLYHAALNLRQMVNY- 239
Query: 463 LDREKELLNLPADKRTGPLQDRYNRIRKVRILLESSQMKLDDAILLFHDF 512
ELL L K L++R N +L + + DD++LLF DF
Sbjct: 240 ---IAELL-LEGSKDETKLRNRKN-------ILILALTRHDDSLLLFCDF 278
>gi|159475425|ref|XP_001695819.1| hypothetical protein CHLREDRAFT_174488 [Chlamydomonas reinhardtii]
gi|158275379|gb|EDP01156.1| predicted protein [Chlamydomonas reinhardtii]
Length = 535
Score = 145 bits (366), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 145/566 (25%), Positives = 246/566 (43%), Gaps = 93/566 (16%)
Query: 4 EYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNC 63
+Y A ++ + +GD V KV + L+ KG L ++ R T ++ VK ALL+LIQQNC
Sbjct: 6 QYACDLACRLVQDQYGDAVGKVFKLLVSKGQLQLGDIVRGTSMNPNIVKQALLILIQQNC 65
Query: 64 VQAFTTEQP-DGFADGPKANTQ-YVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLL 121
+ ++ QP + GP+ + Y D +L +R + L ++
Sbjct: 66 INSYL--QPGEETLRGPRPSFYLYEANTDRVLQIIRMDQVLGSVA--------------- 108
Query: 122 EHGRLTLKQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMP---ISE 178
RL K+ +KE DS+ T + LV AHYVER P P +P +
Sbjct: 109 --ARL--------GKALDKETR----DSISNTFISLVQAHYVERSP---PCSLPPPAVRP 151
Query: 179 EEGPARKKGSKSAKKIGEPETIEQQVVEAA---LPMEAMRFSVVTNVE-----SDVGEKE 230
R + +KSA E +Q + L E RF V + SD G++
Sbjct: 152 HPNSVRTRKAKSAASNTEGYAADQAAALKSFEELSFEKQRFKVPAELALEMFMSDEGDER 211
Query: 231 KNSNNV--------------------------------TPGEKRKHDVLELDECGVADEQ 258
S + P + + + A
Sbjct: 212 AASPDAKMEDADGAGESAGGSGAGGSGAGGGRGRKKRAAPDDDDELAIKITAPAKKAKPA 271
Query: 259 SVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQATSSAEKKVKTKNSVPLSL 318
V++R N + F RR RH+ + VR D+ AA V+SAML A E VK S+ LS+
Sbjct: 272 VVLWRVNNDEFNRRFRHQAIVGLVREKFDEDAAGVVSAMLAAGRPFESSVKLPPSLGLSV 331
Query: 319 SSIYEEVIK-SEAGRNMTLDHVRASLVQLDFEKIIEIAQNEEVESVVSKRYGRDAYRIFR 377
E ++ SE + AS V ++ +++I++ ++ E+VV R+ R+FR
Sbjct: 332 PLCEERSVQLSEDEASSPAWRGSASYV-VNSQRVIDLIMLKQTEAVVKARFDVAGLRVFR 390
Query: 378 LLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTGARQSQ--FLLWKV 435
LL+ G+ LE +I+D + KD ++LY + + G+++++ + T R F W+V
Sbjct: 391 LLALRGQ-LEQKQIADLAMLPAKDTRELLYLMLQGGFVMLQDIPKTADRAPSRTFYTWRV 449
Query: 436 NRQILWKHVLDEMFHAALNLSLRVSYELDREKELLNLPADKR---------TGPLQDRYN 486
N L +++ +A + R+ +E ++EK+L+ L + T +
Sbjct: 450 NMTSLSDSTAAQLYRSAGRVWQRLQFETEKEKDLVALIESAKETRTVNFNLTTAQRQAVA 509
Query: 487 RIRKVRILLESSQMKLDDAILLFHDF 512
R+++V ++E+S LD I +F+DF
Sbjct: 510 RLKRVNEVMETSLAHLDQMIAVFNDF 535
>gi|355389053|gb|AER62469.1| hypothetical protein [Australopyrum retrofractum]
Length = 258
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 91/265 (34%), Positives = 137/265 (51%), Gaps = 25/265 (9%)
Query: 164 ERCPASEPLLMPISEEEG-PARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNV 222
ERCP +EP P +E+ AR++ K+A+++ ++EQ+VV A + RFS +
Sbjct: 1 ERCPKAEPHFNPQEDEQSTAARRRVPKTAEEVL---SLEQKVVNTATLSDPERFSEIPYS 57
Query: 223 ESDVGEKEKNSNNVTPGEKRKHDVLELDE--CGVADEQSVVYRANFEGFIRRLRHKGCID 280
D + +N G KRKH E+DE E V++R NFE FI L+ K C D
Sbjct: 58 MEDASKTNDCPHNAVAGAKRKHGAFEVDEELNSTIAENEVLWRVNFEKFIFCLKKKFCAD 117
Query: 281 HVRAHLDDGAANVLSAMLQATSSAEKKVKTKNSVPLSLSSIYEEVIKSEAGRNMTLDHVR 340
+ L G + + +A + K NSV S + I E++ + E MT+DH++
Sbjct: 118 RKKPKLKVGTHPIWESFFEANLTD----KDTNSVTSSTNGILEKLGQKEGTAAMTVDHMK 173
Query: 341 ASLVQL---------------DFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRL 385
L L D K++E +NEE+ES+V K+YG++A+ IFRLL G
Sbjct: 174 KVLEDLQCSTTSSEDGEAFTFDLRKMVEACRNEEIESLVKKKYGQEAFTIFRLLVTQGCA 233
Query: 386 LETDKISDTTFVEKKDAPKILYKLW 410
+ETD+I DTT ++K+ LYKLW
Sbjct: 234 VETDQIIDTTILDKQIVHSTLYKLW 258
>gi|355389061|gb|AER62473.1| hypothetical protein [Henrardia persica]
Length = 255
Score = 139 bits (350), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 90/262 (34%), Positives = 137/262 (52%), Gaps = 22/262 (8%)
Query: 164 ERCPASEPLLMPISEEEG-PARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNV 222
ERCP +EP P +E+ AR++ K+A+++ ++EQ+VV A + RFS +
Sbjct: 1 ERCPKAEPHFDPREDEQSTSARRRVPKTAEEVL---SLEQKVVNIATLSDPERFSEIPYS 57
Query: 223 ESDVGEKEKNSNNVTPGEKRKHDVLELDE--CGVADEQSVVYRANFEGFIRRLRHKGCID 280
D + +N G KRKH E+DE E V++R NFE FI L+ K C D
Sbjct: 58 MEDASKTNDCPHNAVAGAKRKHGAFEVDEELNSTIAENEVLWRINFEKFIFCLKKKFCAD 117
Query: 281 HVRAHLDDGAANVLSAMLQATSSAEKKVKTKNSVPLSLSSIYEEVIKSEAGRNMTLDHVR 340
+ L G + + +A + K NSV S++ I E++ + E G MT+ ++
Sbjct: 118 RKKPKLKVGTHPIWESFFEANLTD----KDTNSVTSSINGILEKLGQKEGGAAMTIGQIK 173
Query: 341 ASLVQL------------DFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLET 388
L L D K++E +NEE+ES+V K+YG++A+ IFRLL G +ET
Sbjct: 174 PVLEDLQCTTSDGEEFTFDLHKMVEACRNEEIESLVKKKYGQEAFTIFRLLVTQGCAVET 233
Query: 389 DKISDTTFVEKKDAPKILYKLW 410
D+I DTT ++K+ LYKLW
Sbjct: 234 DQIIDTTILDKQIVHSTLYKLW 255
>gi|355389055|gb|AER62470.1| hypothetical protein [Australopyrum retrofractum]
Length = 257
Score = 138 bits (348), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 90/264 (34%), Positives = 136/264 (51%), Gaps = 25/264 (9%)
Query: 165 RCPASEPLLMPISEEEG-PARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVE 223
RCP +EP P +E+ AR++ K+A+++ ++EQ+VV A + RFS +
Sbjct: 1 RCPKAEPHFNPQEDEQSTAARRRVPKTAEEVL---SLEQKVVNTATLSDPERFSEIPYSM 57
Query: 224 SDVGEKEKNSNNVTPGEKRKHDVLELDE--CGVADEQSVVYRANFEGFIRRLRHKGCIDH 281
D + +N G KRKH E+DE E V++R NFE FI L+ K C D
Sbjct: 58 EDASKTNDCPHNAVAGAKRKHGAFEVDEELNSTIAENEVLWRVNFEKFIFCLKKKFCADR 117
Query: 282 VRAHLDDGAANVLSAMLQATSSAEKKVKTKNSVPLSLSSIYEEVIKSEAGRNMTLDHVRA 341
+ L G + + +A + K NSV S + I E++ + E MT+DH++
Sbjct: 118 KKPKLKVGTHPIWESFFEANLTD----KDTNSVTSSTNGILEKLGQKEGTAAMTVDHMKK 173
Query: 342 SLVQL---------------DFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLL 386
L L D K++E +NEE+ES+V K+YG++A+ IFRLL G +
Sbjct: 174 VLEDLQCSTTSSEDGEAFTFDLRKMVEACRNEEIESLVKKKYGQEAFTIFRLLVTQGCAV 233
Query: 387 ETDKISDTTFVEKKDAPKILYKLW 410
ETD+I DTT ++K+ LYKLW
Sbjct: 234 ETDQIIDTTILDKQIVHSTLYKLW 257
>gi|384247960|gb|EIE21445.1| hypothetical protein COCSUDRAFT_43175 [Coccomyxa subellipsoidea
C-169]
Length = 558
Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 132/556 (23%), Positives = 234/556 (42%), Gaps = 72/556 (12%)
Query: 13 VITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQP 72
+I FGD V +VC L +G T V R + L V++ALLVL+Q N V + QP
Sbjct: 15 LIKEFFGDTVERVCNVLTARGQQTLPEVVRASGLPPSAVRSALLVLLQHNFVISELV-QP 73
Query: 73 DGFADGPKANT-QYVVLFDNILHRVRFAKFLTILSQEF-----DQQCVELVQGLLEHGRL 126
D P+A Y I+ +R + L + +E+ V++++ LL HGRL
Sbjct: 74 DTGLRAPQAPYFLYHADTGAIIQILRRPRILQHVQREYGGPGESDMAVKIIEVLLAHGRL 133
Query: 127 TLKQMFD--RAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEGPAR 184
L Q+ A+ EG + L + LV ++ER P P MP+ + +
Sbjct: 134 RLDQVAAAVAARMERPEGEV--RGDLHARFISLVNGRHIERVP---PADMPLRKPVAFTK 188
Query: 185 KKGSKSAKKIGEPETIEQ------QVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTP 238
+ ++A K G PE Q Q+ + + E R D + S
Sbjct: 189 AQAKRAAPKPGTPEAAVQEAEAVRQLAQDSYSAERFRLPRDLTGAPDTTRDPRLSKQAGR 248
Query: 239 GEKRKHDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAML 298
G++++ D + A ++R NFE F RLR + C ++V A +++A+L
Sbjct: 249 GKRKRDDADAASQRSDAASAQELWRVNFEEFNCRLRDEACAEYVAVIYGREAGALVAALL 308
Query: 299 QATS-----------------------SAEKKVKTKNSVPLSLSSIYEEVI-------KS 328
+ + + +++ +P+ + V+ +S
Sbjct: 309 TCAARQPGGSRLDSGASAAVSVLAAAAALPQMRRSRPDLPVLTGAAAARVLGELTEDARS 368
Query: 329 EAGRNMTLDHVRASLVQLDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLET 388
R+ + + + +D I + + +E++V +R+ R+FRLL + + LE
Sbjct: 369 GVTRSGSSGVANEAFI-VDTGAITRAIRQQHIEALVRERFPPIGMRVFRLLC-AKKQLEQ 426
Query: 389 DKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTGARQSQ--FLLWKVNRQILWKHVLD 446
+++D V +DA ++LY++ + G+L ++ + T + F W+V+ + + V +
Sbjct: 427 KQVADYAMVPVRDARELLYRMLRAGFLTLQDVPRTADHSASRTFYTWRVDSTAVTRRVGE 486
Query: 447 EMFHAALNLSLRVSYELDREKELLNL------------PADKRTGPLQDRYNRIRKVRIL 494
E+ AA NL R+ +EL E + P DK R+ +V L
Sbjct: 487 ELLQAAGNLRARLHHELSEHAEAPKVLKRVEAGDTALQPHDK------AEVERVCRVSAL 540
Query: 495 LESSQMKLDDAILLFH 510
LE+ + LD I LFH
Sbjct: 541 LETRLIALDPLIALFH 556
>gi|307104061|gb|EFN52317.1| hypothetical protein CHLNCDRAFT_139103 [Chlorella variabilis]
Length = 589
Score = 121 bits (304), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 137/567 (24%), Positives = 238/567 (41%), Gaps = 82/567 (14%)
Query: 20 DLVAKVCE----CLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQPDGF 75
+++ VCE CL+ G + + + L Q+ +A+LVLIQ N V + E+P
Sbjct: 29 EILGPVCEQAIACLINHGMQQYGELLKTSGLPAGQLSSAVLVLIQHNYVNCYLKEEPPTL 88
Query: 76 ADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTLKQMFDRA 135
+ T Y IL +R +F+T +S E Q+ V LV+ L EHGRL Q+ +
Sbjct: 89 RGPGPSYTLYEAALPRILQSLRVPRFMTHISDEHGQESVRLVRNLTEHGRLRWDQLLEAV 148
Query: 136 --KSSEKEGNLVDLDS-LRETLVKLVTAHYVERCPASEPLLMPISEEEGP-ARKKGSKSA 191
+S+E+ G L LV Y+ER P L P + P ARKK +
Sbjct: 149 VRESAEEGGEAAPAPGVLLNQFRSLVMQRYIERVPPCT--LPPPPQHVHPNARKKKAPPK 206
Query: 192 KKIGEPETIEQQVVEAAL--PMEAMRFSVVTNVESDVGEKEKNSNNVTPGEKRKH----- 244
E + ++ +AAL + +RF + + + S G+ + P KRK
Sbjct: 207 PGSEEEADMHREQADAALRHDYQQVRFRLPSELMSPSGDAVEVDAQAKPAGKRKRGGKDA 266
Query: 245 -------------DVLELDECGV---------------ADEQS-VVYRANFEGFIRRLRH 275
+ + E G DE++ V++R N++ F RR R+
Sbjct: 267 AAASSEAEPAKKRERKKAGEAGAEGGSAASLPAQAAAAGDEEAPVLWRVNYDEFNRRFRN 326
Query: 276 KGCIDHVRAHLDDGAANVLSAMLQATSSAEKKVKTKNSVPLSLSSIYEE----------- 324
+ + A + +L A + E+ + +V LS+ +
Sbjct: 327 DVIVSTAKLKYGVHAGQAVEGLLVANACFEQTAHCEETVVLSVGDVSGALRRIHSNEDPP 386
Query: 325 -----VIKSEAGRNMTLDHVRASLVQ-----LDFEKIIEIAQNEEVESVVSKRYGRDAYR 374
V+ A +M R S L +++ A+ +++ V+ ++G R
Sbjct: 387 DNLACVLSDLADDDMHFLESRGSGPGGEQYVLSISRVLRFARLYQLKGVIRTKFGVAGMR 446
Query: 375 IFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTGARQSQ--FLL 432
I+RLL +G+ LE +++D V K++A + LY + K GYL ++ + T R F
Sbjct: 447 IWRLLLLNGQ-LEQKQVADLAMVTKEEAREALYAMLKGGYLALQDVPRTNDRAPSRTFYT 505
Query: 433 WKVNRQILWKHVLDEMFHAALNLSLRVSYELDREK---ELLNLPA-----DKRTGPLQDR 484
W+ N + +++ AA NL R+ +E ++ ELL LP ++R G +
Sbjct: 506 WRANADTTIARLTSDLYRAAGNLHARLEHEARKQSELWELLELPVAPSIIERRQGEIAA- 564
Query: 485 YNRIRKVRILLESSQMKLDDAILLFHD 511
++ V LE++ + LD + +F D
Sbjct: 565 ---LKAVTSRLEAALLDLDWQVCIFAD 588
>gi|255071113|ref|XP_002507638.1| predicted protein [Micromonas sp. RCC299]
gi|226522913|gb|ACO68896.1| predicted protein [Micromonas sp. RCC299]
Length = 493
Score = 118 bits (295), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 130/537 (24%), Positives = 229/537 (42%), Gaps = 87/537 (16%)
Query: 4 EYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNC 63
+Y A ++T FG K+C +L G T + + T LS + + ALL+L Q N
Sbjct: 9 QYEISLACGIVTESFGKDPGKICRAMLYHGSRTLRETVQETGLSPSRSQRALLILAQHNV 68
Query: 64 VQAFTTEQPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEH 123
V + + QY IL R+R+ ++L + + L++ LLE+
Sbjct: 69 VLVIPESRDED-------ECQYYTKLGVILERLRYPQYLLFAQEHYRGSHNLLIECLLEN 121
Query: 124 GRLTLKQMFDRAKSSEKEGNLVDL-----DSLRETLVKLVTAHYVERCPASEPLLMPISE 178
GRL Q+ +S+ E + + L S R+ L +L + S PL + E
Sbjct: 122 GRLDEHQLMA-GIASKTESDRIGLKRAIVSSSRQALAQLAEDQLI----ISVPLFI---E 173
Query: 179 EEGPARK----KGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSN 234
G +R +G S + P +++ +A E D+ E ++N+
Sbjct: 174 SNGTSRSNFVTRGQTSVSQNSVPSQTVKKIDDAG-----------RKTEDDIKEGKQNN- 221
Query: 235 NVTPGEKRKHDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVL 294
++ N + F RLR C R + + A ++L
Sbjct: 222 --------------------------LWLINCDEFTFRLRRDACAAVFREKVGEPARHLL 255
Query: 295 SAMLQATSSAEKKVKTKNSVPLSLSSIYEEVIKSEAGRNMTLDHVRASLVQ--------- 345
L+ + N + S++ + +G TL +++ S Q
Sbjct: 256 ---LEEVEFNNEAFLLSNKIDTPRKSVHGSSFRDYSGLVQTLPNLKYSTCQSCINNNEAH 312
Query: 346 ---LDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDA 402
+ + ++ + +++E+E+VV +R+G A RIFRLL R LE +I++ + KD
Sbjct: 313 FHNIKLKHVMSLVRSKEIEAVVRERFGGPACRIFRLLLMK-RNLEQKQIAEMAMIPVKDT 371
Query: 403 PKILYKLWKDGYLLMEKLVVTG--ARQSQFLLWKVNRQILWKHVLDEMFHAALNLSLRVS 460
++LYKL K Y+ ++++ T A F LW+V+ + + V E+ HA N+ R+
Sbjct: 372 RELLYKLLKAKYVQIQEVARTSDHAPSRTFYLWRVDLPYVEEQVGREIHHATFNVRARLM 431
Query: 461 YELDREKE-LLNLPADKRTG--PL----QDRYNRIRKVRILLESSQMKLDDAILLFH 510
+E+ RE+E LL L + T PL +D R++ V LE S M+L++ L F+
Sbjct: 432 FEMSREQETLLLLGKAQHTNDFPLTMKQRDSLIRMKTVAARLECSMMRLNELGLFFN 488
>gi|170111356|ref|XP_001886882.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164638240|gb|EDR02519.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 539
Score = 118 bits (295), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 122/500 (24%), Positives = 214/500 (42%), Gaps = 75/500 (15%)
Query: 1 MLTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQ 60
M + + V +I ++FG L AK+ LL +G L + R+T L V+ +LVL+Q
Sbjct: 1 MADSHTARLCVEIIHSNFGPLTAKIASVLLVRGRLPLPQLTRFTALRPRTVRACILVLVQ 60
Query: 61 QNCVQAFTTEQPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGL 120
N + +++ + F V D L R+RF KF+ + F + E+VQ +
Sbjct: 61 HNIIWHVLSDEGEMFE----------VNIDECLMRLRFGKFIYKSEELFGKPAAEVVQVI 110
Query: 121 LEHGRLTLKQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPAS-----EPLLMP 175
L+HG+L + + + +G + + + + KLV+ HY++ P++ P
Sbjct: 111 LDHGKLKMPDIMALLGIYDGKGII----AYTQAIHKLVSGHYLK--PSTTLSHISPCDKR 164
Query: 176 ISEEEGPARK-KGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSN 234
I E RK G +AK++ + ++V EA L E +G K K +
Sbjct: 165 IQYEAEEKRKISGFPTAKELRQA----KEVAEARLKRE-------EEEAEKIGLKRKAKD 213
Query: 235 NVTPGEKRKHDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVL 294
KRK E + + +V +R N+E F LR+ + V+ + AA V+
Sbjct: 214 QSGRSAKRK-----ASESEESVDDAVYFRVNYERFNVHLRNGLIVAAVKERFNHQAALVI 268
Query: 295 SAMLQATSSAEKKVKTKNSVPLSLSSIYEEVIKSE------------------------- 329
A ++ T ++ V S P+S+++I ++ + E
Sbjct: 269 RAAMKVTEQSQLSVSEVRSEPISVANIMTQLPEDEDLGKGLAHSSKKTSNATCIKDYLGM 328
Query: 330 ---------AGRNMTLDHVRASLVQLDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLS 380
AGR + S VQ++FE + + VESV +++G + RI RLLS
Sbjct: 329 LSSADNPTAAGRESSFVSFGTSKVQVEFEVVGRRLRRRLVESVAREKHGVEGVRILRLLS 388
Query: 381 KSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTGARQS--QFLLWKVNRQ 438
+G++ E +IS + KD +L L D + +++ + R F LW V+
Sbjct: 389 DTGKMDE-KQISKIVMMAPKDVRPLLAALASDSLISTQEVPKSADRNPTRTFYLWYVDHN 447
Query: 439 ILWKHVLDEMFHAALNLSLR 458
+L +F N+S+R
Sbjct: 448 KAHLAILGNVFKTLYNISMR 467
>gi|41053897|ref|NP_956526.1| DNA-directed RNA polymerase III subunit RPC3 [Danio rerio]
gi|54039272|sp|Q7ZUX1.1|RPC3_DANRE RecName: Full=DNA-directed RNA polymerase III subunit RPC3;
Short=RNA polymerase III subunit C3; AltName:
Full=DNA-directed RNA polymerase III subunit C
gi|28278013|gb|AAH46092.1| Polymerase (RNA) III (DNA directed) polypeptide C [Danio rerio]
Length = 539
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 116/482 (24%), Positives = 212/482 (43%), Gaps = 51/482 (10%)
Query: 13 VITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQP 72
++ HFGD+V V L+R G LT + + T+L+ + VK +L VL+Q T P
Sbjct: 12 LLQEHFGDVVENVGTHLIRNGVLTLRALAHETKLALDLVKKSLCVLVQ----HGMCTFGP 67
Query: 73 DGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTL---- 128
GP +Y + ++ILH +R+ +++ + +V+ +L+ G++T+
Sbjct: 68 G--RRGPAGPVEYHINCEHILHMLRYPRYIYTAKSLYGDTGELIVEEILQRGQMTMSSTV 125
Query: 129 KQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEGPARKKGS 188
K + DR + EG +D + + +LV H+++RCP M +E G +
Sbjct: 126 KTVADRLTHNMPEGQSMDYNEVVSAFSRLVETHFLQRCPP-----MASAESSGTG---SA 177
Query: 189 KSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGEKRKHDVLE 248
++ + +P E LP ++ S+ GE ++ + +K K D
Sbjct: 178 ETPPAVTQPSNPESHPDCYKLPYISLSGHGKRRRSSEDGEADQRA-----AKKAKTDS-- 230
Query: 249 LDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAML---QATSSAE 305
ECG ++ + ++ NFE F R + I V LD + ++ ML + T+SA
Sbjct: 231 -SECG---DEGIHWQVNFERFHLHFRDQAIISAVSCKLDQTSGEIVRTMLRMSEVTTSAN 286
Query: 306 ---KKVKTKNSVPLSLSSIYEEVIKSEAGRNMTL------------DHVRASLVQLDFEK 350
+ + N + +L S Y + + + +TL + ++ +
Sbjct: 287 AAFTQALSANEIFRALPSNY-NIARPILDQYLTLLVDDPMEFVGKAGDSGGGMFVVNLHR 345
Query: 351 IIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLW 410
+ +ESVV +R+G + RIFRLL + R LE ++ D + K+A ++LY L
Sbjct: 346 ALANLARATLESVVQERFGSRSARIFRLLLRK-RHLEQKQVEDFAMIPAKEAKEMLYTLL 404
Query: 411 KDGYLLMEKLVVTG--ARQSQFLLWKVNRQILWKHVLDEMFHAALNLSLRVSYELDREKE 468
+ + ++++ T A F L+ VN+ + +L + NL R YE K
Sbjct: 405 SENLVQLQEIPKTPDHAPSRTFYLYAVNQLPTARLLLQHCYKTVGNLIERRLYETKENKR 464
Query: 469 LL 470
LL
Sbjct: 465 LL 466
>gi|409082490|gb|EKM82848.1| hypothetical protein AGABI1DRAFT_68847 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 541
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 117/485 (24%), Positives = 213/485 (43%), Gaps = 66/485 (13%)
Query: 11 VHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTE 70
VHV HFG L A+V LL +G L+ + RYT+L + ++L L+Q N +
Sbjct: 14 VHV---HFGSLAAQVVSVLLTRGRLSLPQILRYTQLKPRIARASILALVQHNLLW----- 65
Query: 71 QPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTLKQ 130
A + + D L R+RF KF+ + Q F + ELVQ +L+HG+L
Sbjct: 66 ----HAQSDEGTEVFEFNVDECLMRLRFGKFVHMAQQLFGKAGAELVQSILDHGKLRSPD 121
Query: 131 MFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEGPARKKGSKS 190
+ + + V R + KLV+ +Y++ P++ +L +S + + +G +
Sbjct: 122 ILRLLGVHDSKSITVH----RGVMHKLVSENYLK--PST--VLSHVSPADKQIKYEGEEK 173
Query: 191 AKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNN-VTPGEKRKHDVLEL 249
AK G P E ++ A + R G K K +N+ V KRK L
Sbjct: 174 AKISGFPTAKE---LKQAKQVAEARMRREEEEAGKAGLKPKATNHAVHRARKRK-----L 225
Query: 250 DECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQATSSAEKKVK 309
+E + ++ +R NF+ F +R+ + R ++ AA+VL A+L T S ++ V
Sbjct: 226 EETDEIVDNTIYFRVNFDKFNIHIRNTLIVRAARNRYNEEAASVLRAILHLTESWQRNVA 285
Query: 310 TKNSVPLSLSSIYEEVIK----------------------------------SEAGRNMT 335
S P+S+ ++ ++ + G+ +
Sbjct: 286 EVRSEPVSVPNLVVKLANEDNLARGLVLAVKKPSNTTCIKEYLGMLSCGDNPTAVGKAAS 345
Query: 336 LDHVRASLVQLDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTT 395
+ +S VQ++F+ I + +ESV +R+G + RI RLL +G+ ++ +IS
Sbjct: 346 FISLNSSKVQVEFDVIGRRLRRHVLESVTRERHGNEGVRILRLLMDTGK-MDDKQISKVV 404
Query: 396 FVEKKDAPKILYKLWKDGYLLMEKLVVTGARQS--QFLLWKVNRQILWKHVLDEMFHAAL 453
+ KD +L L D + +++ + R F LW V++ + +L +++ +
Sbjct: 405 MMAGKDVRALLTALATDSLISTQEVPKSADRNPTRTFYLWYVDQHKAFSTILGQVYKSLY 464
Query: 454 NLSLR 458
N+S+R
Sbjct: 465 NISVR 469
>gi|426200322|gb|EKV50246.1| hypothetical protein AGABI2DRAFT_199804 [Agaricus bisporus var.
bisporus H97]
Length = 541
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 116/485 (23%), Positives = 212/485 (43%), Gaps = 66/485 (13%)
Query: 11 VHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTE 70
VHV HFG L A+V LL +G L+ + RYT+L + ++L L+Q N +
Sbjct: 14 VHV---HFGSLAAQVVSVLLTRGRLSLPQILRYTQLKPRIARASILALVQHNLLW----- 65
Query: 71 QPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTLKQ 130
A + + D L R+RF K + + Q F + ELVQ +L+HG+L
Sbjct: 66 ----HAQSDEGTEVFEFNVDECLMRLRFGKIVHMAQQLFGKAGAELVQSILDHGKLRSPD 121
Query: 131 MFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEGPARKKGSKS 190
+ + + V R + KLV+ +Y++ P++ +L +S + + +G +
Sbjct: 122 ILRLLGVHDSKSITVH----RGVMHKLVSENYLK--PST--VLSHVSPADKQIKYEGEEK 173
Query: 191 AKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNN-VTPGEKRKHDVLEL 249
AK G P E ++ A + R G K K +N+ V KRK L
Sbjct: 174 AKISGFPTAKE---LKQAKQVAEARMRREEEEAGKAGLKPKATNHAVHRARKRK-----L 225
Query: 250 DECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQATSSAEKKVK 309
+E + ++ +R NF+ F +R+ + R ++ AA+VL A+L T S ++ V
Sbjct: 226 EETDEIVDNTIYFRVNFDKFNIHIRNTLIVRAARNRYNEEAASVLRAILHLTESWQRNVA 285
Query: 310 TKNSVPLSLSSIYEEVIK----------------------------------SEAGRNMT 335
S P+S+ ++ ++ + G+ +
Sbjct: 286 EVRSEPVSVPNLVVKLANEDNLARGLVLAVKKPSNTTCIKEYLGMLSCGDNPTAVGKAAS 345
Query: 336 LDHVRASLVQLDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTT 395
+ +S VQ++F+ I + +ESV +R+G + RI RLL +G+ ++ +IS
Sbjct: 346 FISLNSSKVQVEFDVIGRRLRRHVLESVTRERHGNEGVRILRLLMDTGK-MDDKQISKVV 404
Query: 396 FVEKKDAPKILYKLWKDGYLLMEKLVVTGARQS--QFLLWKVNRQILWKHVLDEMFHAAL 453
+ KD +L L D + +++ + R F LW V++ + +L +++ +
Sbjct: 405 MMAGKDVRALLTALATDSLISTQEVPKSADRNPTRTFYLWYVDQHKAFSTILGQVYKSLY 464
Query: 454 NLSLR 458
N+S+R
Sbjct: 465 NISVR 469
>gi|355389071|gb|AER62478.1| hypothetical protein [Aegilops speltoides subsp. speltoides]
Length = 252
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 75/235 (31%), Positives = 120/235 (51%), Gaps = 11/235 (4%)
Query: 116 LVQGLLEHGRLTLKQMFDRAKSSEKEGNLVDL-DSLRETLVKLVTAHYVERCPASEPLLM 174
L++GLL++GRLT Q+ R S EG + + +R +LV A YVERCP +EP
Sbjct: 5 LIEGLLQNGRLTFDQLVGRTISKVPEGTIRPAREEIRMNFNRLVYARYVERCPKAEPYFN 64
Query: 175 PISEEEGP-ARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNS 233
P +E+ AR++ K+A+++ ++EQ+V+ A + RFS + D +
Sbjct: 65 PQEDEQSTGARRRVPKTAEEV---LSLEQKVINTATLSDPERFSEIPYSMEDASKTNDCP 121
Query: 234 NNVTPGEKRKHDVLELDE--CGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAA 291
+N G KRKH E+DE E V++R NFE FI L+ K C D + L G
Sbjct: 122 HNAVAGAKRKHGAFEVDEELNSTIAENEVLWRVNFEKFIFCLKKKFCADRKKPKLKVGTH 181
Query: 292 NVLSAMLQATSSAEKKVKTKNSVPLSLSSIYEEVIKSEAGRNMTLDHVRASLVQL 346
+ + +A + K NSV S++ I E++ + E G M++ ++ L+ L
Sbjct: 182 PIWESFFEANLTD----KDTNSVTSSINGILEKLGQKEGGAAMSIGDIKPVLLDL 232
>gi|290991727|ref|XP_002678486.1| predicted protein [Naegleria gruberi]
gi|284092099|gb|EFC45742.1| predicted protein [Naegleria gruberi]
Length = 597
Score = 113 bits (282), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 103/459 (22%), Positives = 221/459 (48%), Gaps = 36/459 (7%)
Query: 85 YVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTLKQMFDRAKSSEKEGNL 144
Y V+ +NI+ R++ AK L + + EL+ LL+HGRLT+K++ +A + + +
Sbjct: 144 YQVIIENIIMRLKSAKLLYTIRTSYGIDAEELLHILLQHGRLTMKELIQKALENITQTDY 203
Query: 145 VDLDSLRET-----LVKLVTAHYVERCPASEPLLMPI--SEEEGPARKKGSKSAKKIGEP 197
++T K+V +++R +P + I E++ A++ GS S + +
Sbjct: 204 TFATESKKTSFITAFQKMVKDRFIKRV---QPYVSSIQLQEQKKNAKEGGSNSTTDLLQK 260
Query: 198 ETIEQQVVEAALPMEAMRFSV-----VTNVESDVGEKEKNSNNVTPGE--KRKHDVLELD 250
+ + + + R ++ + E + +K+ S+ ++P E + D ++ D
Sbjct: 261 YSKQNKESKKKSDKSKKRKTIEDEDGSSQYEPEKKKKKGTSSEISPLEFDTEEFDSIDED 320
Query: 251 ECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQATSSAEKKVKT 310
E + D +++++ N+ FIR R++ I +V + + A+++ A T+ ++
Sbjct: 321 EIHI-DAENILWTTNYSQFIRTFRNESIIKYVETKMGEQFASIVKAAFDETAPYQRSKND 379
Query: 311 KNSVPLSLSSIYEEVIKSEA-GR-----------NMTLDHVRA---SLVQLDFEKIIEIA 355
S PL +Y+ + ++E GR N LD +RA ++ + + +
Sbjct: 380 PMSTPLKFEKLYDRISETEEIGRKVLENNLSFLCNPELDILRAMGKDTYFINLKGVADKL 439
Query: 356 QNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYL 415
+ +E E ++S++Y R+FRLL + + LE I++ + +A +L + + L
Sbjct: 440 KKQETEVIISQKYSVIGCRLFRLLLEK-KYLEQTHIAECALLPPCEARTLLMNMLRGSIL 498
Query: 416 LMEKLVVTGARQSQ--FLLWKVNRQILWKHVLDEMFHAALNLSLRVSYELDREKELLNLP 473
++++ + R +Q F LW V + +++ ++D+M+ + NL +R+ E E L
Sbjct: 499 HLQEVPKSKDRSAQQTFFLWSVKLEQVYEKIIDDMYKSVRNLRIRLKKEQQHIIESGILE 558
Query: 474 ADKRTGPLQDRYNRIRKVRILLESSQMKLDDAILLFHDF 512
+ + +++ R++ + LE+S +KL D I LF DF
Sbjct: 559 STYLSEEQEEQIRRLKNIEDRLEASLIKLVDLITLFEDF 597
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 37/56 (66%), Gaps = 1/56 (1%)
Query: 10 AVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQN-CV 64
AV ++ + FGD++ KV LL +GP T ++ + T L QV+NALLVLIQ N CV
Sbjct: 7 AVEILNDQFGDIIGKVGSVLLEQGPQTMTDLIQNTSLQFPQVRNALLVLIQHNMCV 62
>gi|432908643|ref|XP_004077962.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC3-like
[Oryzias latipes]
Length = 543
Score = 112 bits (279), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 119/496 (23%), Positives = 203/496 (40%), Gaps = 76/496 (15%)
Query: 13 VITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQP 72
++ HFG++V KV LL+ G + + T LS + VK +L VL+Q +
Sbjct: 12 LLQEHFGEVVEKVGRNLLKSGTQNLRAIVHETGLSVDLVKKSLCVLVQHGACSFIQGRK- 70
Query: 73 DGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTL---- 128
GP + T+Y D +L +R+ +++ + +++ LL+ G +T+
Sbjct: 71 -----GPGSPTEYKAHCDRVLRILRYPRYIYTAKTLYGDTGELIIEELLQRGHMTMSNTV 125
Query: 129 KQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEGPARKKGS 188
K + DR S EG+ +D + T KLV H+++RCP PA G+
Sbjct: 126 KTVADRLTQSMDEGSSMDYGEVSATFSKLVETHFLQRCP--------------PAAGAGT 171
Query: 189 KSAKKIGEPETIEQQVVEAALP---MEAMRFSVVT-------NVESDVGEKEKNSNNVTP 238
+ + + A P + R VT ++ S+ GE ++N+
Sbjct: 172 TGSSQTANSTSAAPASSTAPTPESFPDCYRVPQVTLIGRSKRSLASEEGEDQRNAKKA-- 229
Query: 239 GEKRKHDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAML 298
++D DE + ++ NFE F + R + I V LD ++ ++ ML
Sbjct: 230 ---------KMDPETHGDE-GIYWQVNFERFHQHFRDQTIISAVANKLDQTSSEIVRTML 279
Query: 299 Q----ATSSAEKKVKTKNSVPLSLSSIYEEVIKSEAGRNMTLDHVRASLVQLDFE----- 349
+ TSS K PLS + I+ + + LD LV E
Sbjct: 280 RMSEVTTSSTAPCTK-----PLSANEIFRSLPATYNIPRHILDQYLTLLVDDPMEFVGKA 334
Query: 350 -------KIIEIAQ------NEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTF 396
I+ + Q +ES+V +R+G + RIFRLL + R LE ++ D
Sbjct: 335 GESGGGMYIVNLNQALANLARATLESIVQERFGSRSARIFRLLLRK-RHLEQKQVEDFAM 393
Query: 397 VEKKDAPKILYKLWKDGYLLMEKLVVTG--ARQSQFLLWKVNRQILWKHVLDEMFHAALN 454
+ K+A +LY L + ++++ T A F L+ VN+ + +L + N
Sbjct: 394 IPAKEAKDMLYTLLSQNLVQLQEIPKTPDFAPSRTFYLYTVNQLPTARLLLQNCYKTVAN 453
Query: 455 LSLRVSYELDREKELL 470
L R +E K LL
Sbjct: 454 LMERRLFEAKESKRLL 469
>gi|432102040|gb|ELK29859.1| DNA-directed RNA polymerase III subunit RPC3 [Myotis davidii]
Length = 861
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 108/490 (22%), Positives = 209/490 (42%), Gaps = 72/490 (14%)
Query: 13 VITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQP 72
++ HFG++V K+ L+R G + + T S +QVK AL VLIQ N V
Sbjct: 212 LLQEHFGEIVEKIGVHLIRTGSQPLRVIAHDTRTSPDQVKKALCVLIQHNLVT------- 264
Query: 73 DGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTL---- 128
+ + +Y +L +R+ +++ + +V+ LL +G++T+
Sbjct: 265 --YQVHKRGTVEYEAQCSRVLRMLRYPRYIYTAKTLYSDTGELIVEELLLNGKMTMSALV 322
Query: 129 KQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEGPARKKGS 188
K++ DR + ++G +D + T V+L H+V+RCP P +E P
Sbjct: 323 KRVADRLTETMEDGKTMDYAEVSSTFVRLADTHFVQRCPLVSP-----TENSEP------ 371
Query: 189 KSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGEKR----KH 244
G P+ V+ + S++ G++ ++S + GE + KH
Sbjct: 372 ------GPPQPAPTLVINENDMYLVPKLSLIGK-----GKRRRSSEDDATGEPKAKRLKH 420
Query: 245 DVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQATSSA 304
D + + ++AN + F + R + + V +D ++ ++ ML+ +
Sbjct: 421 ST---DNKEPLPDDGIYWQANLDRFHQHFRDQAIVSAVANRMDQTSSEIVRTMLRMS--- 474
Query: 305 EKKVKTKNSVPLSLSSIYEEVIKS-EAGRNMT---------------LDHVRAS------ 342
++ T + P + E+ +S G N++ L+ V S
Sbjct: 475 --EITTPSGAPFTQPLSSNEIFRSLPTGYNISKQVLDQYLTLLADDPLEFVGKSGDSGGG 532
Query: 343 LVQLDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDA 402
+ ++ K++ +ESVV +R+G RIFRL+ + + LE ++ D + K+A
Sbjct: 533 MYVINLHKVLGSLATATLESVVQERFGSRCARIFRLVLQK-KHLEQKQVEDFAMIPAKEA 591
Query: 403 PKILYKLWKDGYLLMEKLVVTG--ARQSQFLLWKVNRQILWKHVLDEMFHAALNLSLRVS 460
+LYK+ + ++L++++ T A F L+ VN + +L + + NL R
Sbjct: 592 KDMLYKMLSENFILLQEIPKTPDHAPSRTFYLYTVNILSAARMLLHRCYKSVANLIERRQ 651
Query: 461 YELDREKELL 470
+E K LL
Sbjct: 652 FETKENKRLL 661
>gi|348527048|ref|XP_003451031.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC3-like
[Oreochromis niloticus]
Length = 547
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 118/485 (24%), Positives = 198/485 (40%), Gaps = 49/485 (10%)
Query: 13 VITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQP 72
++ HFG++V KV LL+ G + + T LS + VK +L VL+Q
Sbjct: 12 LLQEHFGEVVEKVGTHLLKSGAQNLRTIIHETGLSVDLVKKSLCVLVQHGATT------- 64
Query: 73 DGFADGPK---ANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTL- 128
F+ G K + T+Y D IL +R+ +++ + +++ LL+ G T+
Sbjct: 65 --FSSGRKGLGSPTEYHTSCDRILRILRYPRYIYTAKTLYGDTGELIIEELLQRGHTTMS 122
Query: 129 ---KQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEGPARK 185
K + DR + EG +D + T KLV H+++RCP PL G K
Sbjct: 123 STVKTVADRLTQNMAEGRTMDYTEVSSTFSKLVETHFLQRCP---PL-------PGVGNK 172
Query: 186 KGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGEKRKHD 245
S + P T V A E+ + +G ++ + E+R
Sbjct: 173 DSSAPIETPATPGTPAAPVNTAPPTPESFPECYKVPSVTLIGRGKRQLASEDGEEQRSAK 232
Query: 246 VLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQATSSAE 305
++D DE + ++ NFE F R + I V LD ++ ++ ML+ +
Sbjct: 233 RAKMDPETHGDE-GIYWQVNFERFHLHFRDQTIISAVANKLDQTSSEIVRTMLRMSEVTT 291
Query: 306 KKVKTKNSVPLSLSSIYEEVIKSEAGRNMTLDHVRASLVQLDFEKIIEIAQN-------- 357
+ T PLS + I+ + S LD LV E + + ++
Sbjct: 292 SPMATCTK-PLSANEIFRSLPPSYNILRPILDQYLTLLVDDPMEFVGKAGESGGGMFVVN 350
Query: 358 ----------EEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILY 407
+ESVV +R+G + RIFRLL + R LE ++ D + K+A +LY
Sbjct: 351 LHRALANLARATLESVVQERFGSRSARIFRLLLRK-RHLEQKQVEDFAMIPAKEAKDMLY 409
Query: 408 KLWKDGYLLMEKLVVTG--ARQSQFLLWKVNRQILWKHVLDEMFHAALNLSLRVSYELDR 465
L + ++++ T A F L+ VN+ + +L + NL R +E
Sbjct: 410 TLLSQNLVQLQEIPKTPDYAPSRTFYLYTVNQLPTARMLLQNCYKTVANLIERRLFETKE 469
Query: 466 EKELL 470
K LL
Sbjct: 470 SKRLL 474
>gi|302835680|ref|XP_002949401.1| hypothetical protein VOLCADRAFT_89829 [Volvox carteri f.
nagariensis]
gi|300265228|gb|EFJ49420.1| hypothetical protein VOLCADRAFT_89829 [Volvox carteri f.
nagariensis]
Length = 634
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 76/297 (25%), Positives = 146/297 (49%), Gaps = 38/297 (12%)
Query: 253 GVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQATSSAEKKVKTKN 312
A+ V++R N + F R RH+ + +R D+ AA V++AML E VK +
Sbjct: 339 AAAEPPVVLWRVNNDEFNRVFRHQAMVGLIREKFDEDAAAVVTAMLATARPHEASVKEER 398
Query: 313 SVPLSLSSI--------------------YEEVIKSEAGRNMTLDHVRASLVQ------L 346
SVPLS I V+++ A + + A+ +Q +
Sbjct: 399 SVPLSEGEIETTVGRLTTAGVLEALPQQPVSAVLRTLASDPFEMFSLAATGMQGSPMYVI 458
Query: 347 DFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKIL 406
+ +++I++ +++E+VV RY R+FRLL+ G+ LE +I+D + +KD ++L
Sbjct: 459 NSQRVIDLIMLKQIEAVVKSRYDIAGLRVFRLLALRGQ-LEQKQIADLAMLPQKDTRELL 517
Query: 407 YKLWKDGYLLMEKLVVTGARQS--QFLLWKVNRQILWKHVLDEMFHAALNLSLRVSYELD 464
Y++ G++L++ + + R F W+V+ + + ++F A + R+ +E++
Sbjct: 518 YRMLAGGFVLLQDIPKSADRAPSRSFYTWRVSVTAICEATAGQLFRATGRVHQRLKFEME 577
Query: 465 REKELLNLPADKR---------TGPLQDRYNRIRKVRILLESSQMKLDDAILLFHDF 512
+EKELL L + T + NR++++ ++E+S LD+ I +F+DF
Sbjct: 578 KEKELLGLLESAKEAKTVNFTLTTAQRQAVNRLKRMSEVMETSLQHLDEMIAVFNDF 634
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 61/212 (28%), Positives = 98/212 (46%), Gaps = 7/212 (3%)
Query: 4 EYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNC 63
++ A+ ++ +GD V V + L KG L + R T LS VK ALL+LIQQNC
Sbjct: 6 QFACDLAIRLVQEQYGDAVGGVFKYLAAKGQLPLGEIIRGTGLSASLVKQALLILIQQNC 65
Query: 64 VQAFTTEQPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEH 123
V + + F + Y +L +R ++FL + E + +V LL+
Sbjct: 66 VSVYLQPGEESFRGARPSFHVYECDLGRVLQIIRHSRFLLHIRDEAGEVAEHIVAQLLQD 125
Query: 124 GRLTLKQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCP---ASEPLLMP----I 176
GRL + Q+ + + D++R T + LV AHYVER P A P + P +
Sbjct: 126 GRLRMDQVLGGVAARMGKAQEEVADTIRNTFISLVQAHYVERAPLCNAPPPTIRPHPNSV 185
Query: 177 SEEEGPARKKGSKSAKKIGEPETIEQQVVEAA 208
+ PA + +A++ T+E+ +E A
Sbjct: 186 KARKKPAGGGEAFAAEQGAASRTLEELAIEKA 217
>gi|47207522|emb|CAG14088.1| unnamed protein product [Tetraodon nigroviridis]
Length = 542
Score = 108 bits (270), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 116/493 (23%), Positives = 207/493 (41%), Gaps = 66/493 (13%)
Query: 13 VITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQN-CVQAFTTEQ 71
++ HFG++V KV LL+ G + + T + + VK AL VL+Q CV
Sbjct: 12 LLREHFGEVVEKVGTHLLKSGAQNLRTILHETGMPLDLVKKALCVLVQHGICVFRHR--- 68
Query: 72 PDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTL--- 128
GP T Y D IL +R+ +++ + +V+ LL+ G +T+
Sbjct: 69 ------GPGRPTDYQSSCDRILRILRYPRYIYTAKTLYGDTGELIVEELLQRGEMTMSRT 122
Query: 129 -KQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEGPARKKG 187
K + DR + ++G +D + KLV H+++RCP P++ G A+ G
Sbjct: 123 VKTVADRLTQNMEDGQSMDYSEVSSAFCKLVETHFLQRCP-------PVA---GAAKTDG 172
Query: 188 -------SKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGE 240
++++ + PE+ +P +R + + GE ++N+ +
Sbjct: 173 AAPAAPAAQASASVPTPESFADCY---KVPQVTLRGRGKRRLSGEDGEDQRNA------K 223
Query: 241 KRKHDVLELDECGVA---DEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAM 297
K K D E+D C + ++ + ++ NFE F R + I V LD ++ ++ M
Sbjct: 224 KAKMDS-EVDFCFIVTTHGDEGIYWQVNFERFHLHFRDQAIISAVANKLDQTSSEIVRTM 282
Query: 298 LQATSSAEKKVKTKNSVPLSLSSIYEEVIKSEAGRNMTLDHVRASLVQ------------ 345
L+ S + PLS + I+ + S LD LV
Sbjct: 283 LR-MSEVTTPPTASCTKPLSANEIFRSLPGSYNIARPVLDQYLTLLVDDPMEFVGRAGES 341
Query: 346 ------LDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEK 399
++ K++ +ES+V +R+G + RIFRLL + R LE ++ D +
Sbjct: 342 GGGMYVVNLHKVLANLARATLESIVQERFGSRSARIFRLLLRK-RHLEQKQVEDFAMIPA 400
Query: 400 KDAPKILYKLWKDGYLLMEKLVVTG--ARQSQFLLWKVNRQILWKHVLDEMFHAALNLSL 457
K+A +LY L + ++++ T A F L+ N+ + +L + NL +
Sbjct: 401 KEAKDMLYMLLSQNLVQLQEIPKTPDFAPSRTFYLYTCNQLPTARMLLQNCYKTVANLIV 460
Query: 458 RVSYELDREKELL 470
R +E K LL
Sbjct: 461 RRLFESKESKRLL 473
>gi|84370055|ref|NP_001033600.1| DNA-directed RNA polymerase III subunit RPC3 [Bos taurus]
gi|124021674|sp|Q2TBL4.1|RPC3_BOVIN RecName: Full=DNA-directed RNA polymerase III subunit RPC3;
Short=RNA polymerase III subunit C3; AltName:
Full=DNA-directed RNA polymerase III subunit C
gi|83638574|gb|AAI09973.1| Polymerase (RNA) III (DNA directed) polypeptide C (62kD) [Bos
taurus]
Length = 533
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 112/498 (22%), Positives = 212/498 (42%), Gaps = 66/498 (13%)
Query: 2 LTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQ 61
+T+ K ++ HFG++V K+ L+R G + + T S +QVK AL VLIQ
Sbjct: 1 MTQAEIKLCSLLLQEHFGEIVEKIGVHLIRTGSQPLRVIAHDTGTSLDQVKKALCVLIQH 60
Query: 62 NCVQAFTTEQPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLL 121
N V + + +Y + +L +R+ +++ + +V+ LL
Sbjct: 61 NLVT---------YQVHKRGVVEYEAQCNRVLRMLRYPRYIYTAKTLYSDTGELIVEELL 111
Query: 122 EHGRLTL----KQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPIS 177
+G++T+ K++ DR + ++G +D + T V+LV H+V+RCP L+P +
Sbjct: 112 LNGKMTMSAVVKKVADRLTETMEDGKTMDYAEVSNTFVRLVDTHFVQRCP-----LVPAT 166
Query: 178 EEEGPARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVT 237
E G P VV + S++ G++ ++S+
Sbjct: 167 EN------------SDTGPPPPAPTLVVSEKDMYLVPKLSLIGK-----GKRRRSSDEDA 209
Query: 238 PGE-KRKHDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSA 296
GE K K D + + ++AN + F + R + + V +D ++ ++
Sbjct: 210 TGEPKAKRPKQTTDNKEPIPDDGIYWQANLDRFHQHFRDQAIVSAVANRMDQTSSEIVRT 269
Query: 297 MLQATSSAEKKVKTKNSVPLSLSSIYEEVIKS-EAGRNMT---------------LDHVR 340
ML+ + +V T + P + E+ +S G N++ L+ V
Sbjct: 270 MLRMS-----EVTTPSGAPFTQPLSSNEIFRSLPVGYNISKQVLDQYLTLLADDPLEFVG 324
Query: 341 AS------LVQLDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDT 394
S + ++ K + +ESVV +R+G RIFRL+ + + LE ++ D
Sbjct: 325 KSGDSGGGMYVINLHKALGSLATATLESVVQERFGSRCARIFRLVLQK-KHLEQKQVEDF 383
Query: 395 TFVEKKDAPKILYKLWKDGYLLMEKLVVTG--ARQSQFLLWKVNRQILWKHVLDEMFHAA 452
+ K+A +LYK+ + ++ ++++ T A F L+ VN + +L + +
Sbjct: 384 AMIPAKEAKDMLYKMLSENFISLQEIPKTPDHAPSRTFYLYTVNILSAARMLLHRCYKSV 443
Query: 453 LNLSLRVSYELDREKELL 470
NL R +E K LL
Sbjct: 444 ANLIERRQFETKENKRLL 461
>gi|336367824|gb|EGN96168.1| hypothetical protein SERLA73DRAFT_94223 [Serpula lacrymans var.
lacrymans S7.3]
gi|336380559|gb|EGO21712.1| hypothetical protein SERLADRAFT_474473 [Serpula lacrymans var.
lacrymans S7.9]
Length = 542
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 128/491 (26%), Positives = 213/491 (43%), Gaps = 75/491 (15%)
Query: 11 VHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCV-QAFTT 69
V +I +HFG L A V LL +G L + RYT L V+ A+L+L+QQN + A +
Sbjct: 11 VQIIHSHFGPLTASVASALLTRGRLPLLQLVRYTSLKPRTVRAAVLILVQQNILWHAHSE 70
Query: 70 EQPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRL--- 126
E+ + + NT+ L R+RF +F+ Q F + E+VQ +L+HG+L
Sbjct: 71 EEGEVL----EVNTK------ECLMRLRFGRFVWQAEQVFGKAAAEIVQLILDHGKLRPV 120
Query: 127 -TLKQM--FDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEGPA 183
+ Q+ +D SS + L KLVTA Y++ P++ +L S +
Sbjct: 121 DIVAQLSIYDPKSSS----------MYSQALHKLVTASYLK--PST--ILSHNSPRDKRI 166
Query: 184 RKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGEKRK 243
R +G + AK G P E + A A R +G K K + ++
Sbjct: 167 RYEGEEKAKISGFPTAKE---LREAKETAAARLKREEEEAEKIGLKRKPKEQSSNRSNKR 223
Query: 244 HDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQATSS 303
V E E V DE V +R NF+ F +R+K V+ + AA V+ A L+AT +
Sbjct: 224 KAVDE--EVFVDDE--VYFRVNFDKFNIHIRNKIIELAVKERFNSSAALVMRAALKATEA 279
Query: 304 AEKKVKTKNSVPLSLSSIYEEVIKSE---------------------------AGRNMTL 336
+ + S P S++ I V ++ + N T
Sbjct: 280 KQVSSASVRSDPTSIAGISMHVDDADDLASGLVTSSKKAPVASLVKNYLGLLSSADNPTP 339
Query: 337 DHVRASLVQL-------DFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETD 389
A+ V L +F+ + + + +E+V +R+G D RI RLL +G++ E
Sbjct: 340 SGQAAAFVSLSDNKVHVEFDVVNKRLRRRVLEAVTRERHGDDGVRILRLLLDTGKMDEK- 398
Query: 390 KISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTGARQS--QFLLWKVNRQILWKHVLDE 447
++S + KDA +L L D + ++++ + R F LW V+ + +L
Sbjct: 399 QVSKVAMMANKDARPLLSALSTDSLISIQEVPKSADRNPTRTFYLWFVDLPKAYSVLLGS 458
Query: 448 MFHAALNLSLR 458
++ N+S+R
Sbjct: 459 LYKTLYNISMR 469
>gi|296489517|tpg|DAA31630.1| TPA: DNA-directed RNA polymerase III subunit RPC3 [Bos taurus]
gi|440903799|gb|ELR54406.1| DNA-directed RNA polymerase III subunit RPC3 [Bos grunniens mutus]
Length = 533
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 112/498 (22%), Positives = 212/498 (42%), Gaps = 66/498 (13%)
Query: 2 LTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQ 61
+T+ K ++ HFG++V K+ L+R G + + T S +QVK AL VLIQ
Sbjct: 1 MTQAEIKLCSLLLQEHFGEIVEKIGVHLIRTGSQPLRVIAHDTGTSLDQVKKALCVLIQH 60
Query: 62 NCVQAFTTEQPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLL 121
N V + + +Y + +L +R+ +++ + +V+ LL
Sbjct: 61 NLVI---------YQVHKRGVVEYEAQCNRVLRMLRYPRYIYTAKTLYSDTGELIVEELL 111
Query: 122 EHGRLTL----KQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPIS 177
+G++T+ K++ DR + ++G +D + T V+LV H+V+RCP L+P +
Sbjct: 112 LNGKMTMSAVVKKVADRLTETMEDGKTMDYAEVSNTFVRLVDTHFVQRCP-----LVPAT 166
Query: 178 EEEGPARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVT 237
E G P VV + S++ G++ ++S+
Sbjct: 167 EN------------SDTGPPPPAPTLVVSEKDMYLVPKLSLIGK-----GKRRRSSDEDA 209
Query: 238 PGE-KRKHDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSA 296
GE K K D + + ++AN + F + R + + V +D ++ ++
Sbjct: 210 TGEPKAKRPKQTTDNKEPIPDDGIYWQANLDRFHQHFRDQAIVSAVANRMDQTSSEIVRT 269
Query: 297 MLQATSSAEKKVKTKNSVPLSLSSIYEEVIKS-EAGRNMT---------------LDHVR 340
ML+ + +V T + P + E+ +S G N++ L+ V
Sbjct: 270 MLRMS-----EVTTPSGAPFTQPLSSNEIFRSLPVGYNISKQVLDQYLTLLADDPLEFVG 324
Query: 341 AS------LVQLDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDT 394
S + ++ K + +ESVV +R+G RIFRL+ + + LE ++ D
Sbjct: 325 KSGDSGGGMYVINLHKALGSLATATLESVVQERFGSRCARIFRLVLQK-KHLEQKQVEDF 383
Query: 395 TFVEKKDAPKILYKLWKDGYLLMEKLVVTG--ARQSQFLLWKVNRQILWKHVLDEMFHAA 452
+ K+A +LYK+ + ++ ++++ T A F L+ VN + +L + +
Sbjct: 384 AMIPAKEAKDMLYKMLSENFISLQEIPKTPDHAPSRTFYLYTVNILSAARMLLHRCYKSV 443
Query: 453 LNLSLRVSYELDREKELL 470
NL R +E K LL
Sbjct: 444 ANLIERRQFETKENKRLL 461
>gi|426216419|ref|XP_004002460.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC3 [Ovis
aries]
Length = 534
Score = 106 bits (265), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 111/498 (22%), Positives = 212/498 (42%), Gaps = 66/498 (13%)
Query: 2 LTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQ 61
+T+ K ++ HFG++V K+ L+R G + + T S +QVK AL VLIQ
Sbjct: 1 MTQAEIKLCSLLLQEHFGEIVEKIGVHLIRTGSQPLRVIAHDTGTSLDQVKKALCVLIQH 60
Query: 62 NCVQAFTTEQPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLL 121
N V + + +Y + +L +R+ +++ + +V+ LL
Sbjct: 61 NLVI---------YQVHKRGVVEYEAQCNRVLRMLRYPRYIYTAKTLYSDTGELIVEELL 111
Query: 122 EHGRLTL----KQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPIS 177
+G++T+ K++ DR + ++G +D + T V+LV H+V+RCP L+P +
Sbjct: 112 LNGKMTMSAVVKKVADRLTETMEDGKTMDYAEVSNTFVRLVDTHFVQRCP-----LVPAT 166
Query: 178 EEEGPARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVT 237
E G P V+ + S++ G++ ++S+
Sbjct: 167 EN------------SDTGPPPPAPTLVINEKDMYLVPKLSLIGK-----GKRRRSSDEDA 209
Query: 238 PGE-KRKHDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSA 296
GE K K D + + ++AN + F + R + + V +D ++ ++
Sbjct: 210 TGEPKAKRPKQSTDNKEPIPDDGIYWQANLDRFHQHFRDQAIVSAVANRMDQTSSEIVRT 269
Query: 297 MLQATSSAEKKVKTKNSVPLSLSSIYEEVIKS-EAGRNMT---------------LDHVR 340
ML+ + +V T + P + E+ +S G N++ L+ V
Sbjct: 270 MLRMS-----EVTTPSGAPFTQPLSSNEIFRSLPVGYNISKQVLDQYLTLLADDPLEFVG 324
Query: 341 AS------LVQLDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDT 394
S + ++ K + +ESVV +R+G RIFRL+ + + LE ++ D
Sbjct: 325 KSGDSGGGMYVINLHKALGSLATATLESVVQERFGSRCARIFRLVLQK-KHLEQKQVEDF 383
Query: 395 TFVEKKDAPKILYKLWKDGYLLMEKLVVTG--ARQSQFLLWKVNRQILWKHVLDEMFHAA 452
+ K+A +LYK+ + ++ ++++ T A F L+ VN + +L + +
Sbjct: 384 AMIPAKEAKDMLYKMLSENFISLQEIPKTPDHAPSRTFYLYTVNILSAARMLLHRCYKSV 443
Query: 453 LNLSLRVSYELDREKELL 470
NL R +E K LL
Sbjct: 444 ANLIERRQFETKENKRLL 461
>gi|350583445|ref|XP_003125853.3| PREDICTED: DNA-directed RNA polymerase III subunit RPC3-like
isoform 1 [Sus scrofa]
Length = 514
Score = 106 bits (265), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 110/498 (22%), Positives = 216/498 (43%), Gaps = 66/498 (13%)
Query: 2 LTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQ 61
+T+ K ++ HFG++V K+ L+R G + + T S +QVK AL VLIQ
Sbjct: 1 MTQAEIKLCSLLLQEHFGEIVEKIGVHLIRTGSQPLRVIAHDTRTSLDQVKKALCVLIQH 60
Query: 62 NCVQAFTTEQPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLL 121
N V + + +Y +L +R+ +++ + +V+ LL
Sbjct: 61 NLVI---------YQVHKRGVVEYEAQCSRVLRMLRYPRYIYTAKTLYSDTGELIVEELL 111
Query: 122 EHGRLTL----KQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPIS 177
+G++T+ K++ DR + ++G +D + T V+L H+V+RCP L+P +
Sbjct: 112 LNGKMTMSAVVKKVADRLTETMEDGKTMDYAEVSNTFVRLADTHFVQRCP-----LVPAT 166
Query: 178 EEEGPARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVT 237
E P + P + + +P + S++ G++ ++S+
Sbjct: 167 ENSDPGPLPPA--------PNLVINEKDMYLVP----KLSLIGK-----GKRRRSSDEDA 209
Query: 238 PGE-KRKHDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSA 296
GE K K D + + + ++AN + F + R + + V +D ++ ++
Sbjct: 210 TGEPKAKRPKHATDNKEPSPDDGIYWQANLDRFHQHFRDQAIVSAVANRMDQTSSEIVRT 269
Query: 297 MLQATSSAEKKVKTKNSVPLSLSSIYEEVIKS-EAGRNMT---------------LDHVR 340
ML+ + ++ T +S P + E+ +S G N++ L+ V
Sbjct: 270 MLRMS-----EITTSSSAPFTQPLSSNEIFRSLPVGYNISKQVLDQYLTLLADDPLEFVG 324
Query: 341 AS------LVQLDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDT 394
S + ++ K + +ESVV +R+G RIFRL+ + + LE ++ D
Sbjct: 325 KSGDSGGGMYVINLHKALGSLATATLESVVQERFGSRCARIFRLVLQK-KHLEQKQVEDF 383
Query: 395 TFVEKKDAPKILYKLWKDGYLLMEKLVVTG--ARQSQFLLWKVNRQILWKHVLDEMFHAA 452
+ K+A +LYK+ + ++ ++++ T A F L+ VN + +L + + +
Sbjct: 384 AMIPAKEAKDMLYKMLSENFMSLQEIPKTPDHAPSRTFYLYTVNILSAARMLLHKCYKSV 443
Query: 453 LNLSLRVSYELDREKELL 470
NL R +E K LL
Sbjct: 444 ANLIERRQFETKENKRLL 461
>gi|291398107|ref|XP_002715432.1| PREDICTED: polymerase (RNA) III (DNA directed) polypeptide C (62kD)
[Oryctolagus cuniculus]
Length = 534
Score = 104 bits (260), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 109/498 (21%), Positives = 216/498 (43%), Gaps = 66/498 (13%)
Query: 2 LTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQ 61
+T+ K ++ HFG++V K+ L+R G + + T S +QVK AL VLIQ
Sbjct: 1 MTQAEIKLCSLLLQEHFGEIVEKIGVHLIRTGSQPLRVIVHDTGTSPDQVKKALCVLIQH 60
Query: 62 NCVQAFTTEQPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLL 121
N V + + +Y ++L +R+ +++ + +V+ LL
Sbjct: 61 NLVI---------YQVHKRGVVEYEAQCSHMLRMLRYPRYIYTTKTLYSDTGELIVEELL 111
Query: 122 EHGRLTL----KQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPIS 177
+G++T+ K++ DR + ++G +D + T V+L H+V+RCP ++P +
Sbjct: 112 LNGKMTMSAVVKKVADRLTETMEDGKTMDYAEVSNTFVRLADTHFVQRCP-----VVPAT 166
Query: 178 EEEGPARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVT 237
E+ S S P + + +P + +++ G++ ++S+
Sbjct: 167 ED--------SDSGPPPPAPTLVINEKDMYVVP----KLNLIGK-----GKRRRSSDEDA 209
Query: 238 PGE-KRKHDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSA 296
GE K K D + + ++AN + F + R + + V +D ++ ++
Sbjct: 210 AGEPKAKRPKQSTDNKEPIPDDGIYWQANLDRFHQHFRDQAIVSAVANRMDQTSSEIVRT 269
Query: 297 MLQATSSAEKKVKTKNSVPLSLSSIYEEVIKS-EAGRNMT---------------LDHVR 340
ML+ + ++ T +S P + E+ +S G N++ L+ V
Sbjct: 270 MLRMS-----EITTPSSAPFTQPLSSNEIFRSLPVGYNISKQVLDQYLTLLADDPLEFVG 324
Query: 341 AS------LVQLDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDT 394
S + ++ K + +ESVV +R+G RIFRL+ + + LE ++ D
Sbjct: 325 KSGDSGGGMYVINLHKALASLATATLESVVQERFGSRCARIFRLVLQK-KHLEQKQVEDF 383
Query: 395 TFVEKKDAPKILYKLWKDGYLLMEKLVVTG--ARQSQFLLWKVNRQILWKHVLDEMFHAA 452
+ K+A +LYK+ + ++ ++++ T A F L+ VN + +L + +
Sbjct: 384 AMIPAKEAKDMLYKMLSENFISLQEIPKTPDHAPSRTFYLYTVNVLSAARMLLHRCYKSI 443
Query: 453 LNLSLRVSYELDREKELL 470
NL R +E K LL
Sbjct: 444 ANLIERRQFETKENKRLL 461
>gi|355389039|gb|AER62462.1| hypothetical protein [Agropyron mongolicum]
Length = 214
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 69/221 (31%), Positives = 109/221 (49%), Gaps = 21/221 (9%)
Query: 165 RCPASEPLLMPISEEEGPARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVES 224
RCP +EP P +E PAR + K+A+++ ++EQ+VV A + RFS +
Sbjct: 1 RCPKAEPYFDPREDESTPARXRVPKTAEEVL---SLEQKVVNTATLSDPERFSEIPYSME 57
Query: 225 DVGEKEKNSNNVTPGEKRKHDVLELDE--CGVADEQSVVYRANFEGFIRRLRHKGCIDHV 282
D + ++ G KRKH E+DE E V++R NFE FI L+ K C D
Sbjct: 58 DASKTNDCPHSAVAGAKRKHGAFEVDEELNSTIAENEVLWRVNFEKFIFCLKKKFCADRK 117
Query: 283 RAHLDDGAANVLSAMLQATSSAEKKVKTKNSVPLSLSSIYEEVIKSEAGRNMTLDHVRAS 342
+ L G + + +A + K NSV SL+ I E++ + E G M++ ++
Sbjct: 118 KPKLKVGTHPIWESFFEANLTD----KDTNSVTSSLNGILEKLGQKEGGAAMSIGDIKPV 173
Query: 343 LVQL------------DFEKIIEIAQNEEVESVVSKRYGRD 371
L L D K++E +NEE+ES+V K+YG++
Sbjct: 174 LQDLQCTTSDGEEFTFDLRKMVEACRNEEIESLVKKKYGQE 214
>gi|390345722|ref|XP_799017.3| PREDICTED: DNA-directed RNA polymerase III subunit RPC3-like
[Strongylocentrotus purpuratus]
Length = 532
Score = 102 bits (255), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 103/484 (21%), Positives = 203/484 (41%), Gaps = 63/484 (13%)
Query: 13 VITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQP 72
++ HFGD+V K+C LL+ G ++V + EQVK AL VLIQ N V+
Sbjct: 12 LVQEHFGDVVEKICTHLLKNGSNNFRSVVSTVKEKPEQVKKALCVLIQHNIVK------- 64
Query: 73 DGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTLKQMF 132
+ + +Y + L VR+ +++ + +V+ +L HG + + +
Sbjct: 65 --YGLNKRGMVEYTADVEKALLLVRYPRYIYSAKTLYGDIGELIVEEVLHHGEILMSNVV 122
Query: 133 DRAKSSEK---EGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEGPARKKGSK 189
++ K K EGN ++ ++++ + LV H+++R P S
Sbjct: 123 EKVKVRLKEAMEGNQLEPSAIKDKFIDLVNTHFLQRLP--------------------SW 162
Query: 190 SAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGEKRKHDVLEL 249
SA E E+ V +P ++ + + + G K + G +
Sbjct: 163 SA------EDDEESKVIPLIPHLSVSDADLYRIPETAGVTGKRKRPLNDGGRSSKRARSS 216
Query: 250 DECGVADEQ-----SVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQATSSA 304
D++ + ++ NFE F R R + I + +D A +V++ ML+ S
Sbjct: 217 SVGSEPDQEVPLDDGIYWKVNFERFHRYFRDQDIISAITQRIDKSAGDVVATMLR-MSEL 275
Query: 305 EKKVKTKNSVPLSLSSIYEEVIKSEAGRNMT------LD----------HVRASLVQLDF 348
+ + PLS I ++ K R + LD + ++D
Sbjct: 276 TTDFMARETKPLSFHDIARQMPKKLENRQLEQYMKLLLDDQTMIVKKYGDAGGGMYEIDL 335
Query: 349 EKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYK 408
E+ + +ESVV +R+G ++RIF+ L K + LE +I + + K+A +++Y+
Sbjct: 336 EQASRVICTANIESVVQERFGSKSFRIFKTLLKK-KYLEQKQIENFALIPAKEAKELVYQ 394
Query: 409 LWKDGYLLMEKLVVTG--ARQSQFLLWKVNRQILWKHVLDEMFHAALNLSLRVSYELDRE 466
++ + ++ ++++ T A F L+ V + + + + + +NL R +E
Sbjct: 395 MFAENFITVQEIPRTPDHAPSRTFYLFTVELGQVTFMLAERCYKSLINLMTRRHFESAEN 454
Query: 467 KELL 470
K L+
Sbjct: 455 KRLI 458
>gi|297818094|ref|XP_002876930.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297322768|gb|EFH53189.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 288
Score = 102 bits (254), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 90/297 (30%), Positives = 145/297 (48%), Gaps = 51/297 (17%)
Query: 149 SLRETLVKLVTAHYVERCPASEPLLMPISEEEGPARKKGSKSAKKIGEPETIEQQVVEAA 208
S++E+L KLV AH+VER P+ +P S R++G+ ++++V++ A
Sbjct: 15 SVKESLKKLVAAHFVERSPSLDP-----SFGRDLPRRRGATYPLFFDNLIVLKKKVLQTA 69
Query: 209 LPMEAMRF--SVVTNVESDVGEKEKNSNNVTPGEKRKHDVLELDECGVADEQSVVYRANF 266
P E +RF + N +S++ ++ KRK DV D + + +R NF
Sbjct: 70 -PAEDIRFPLTAFANTDSNIAKR-----------KRKPDVDASDPSKL-----ITWRPNF 112
Query: 267 EGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQATSSAEKKVKTKNSVPLSLSSIYEEVI 326
E FI RLRHK C+D V+ + + VL AML SAE+KV+ S +S+ S +EV
Sbjct: 113 EEFISRLRHKACLDIVKKNKGEECVAVLRAMLN-VKSAEEKVEKGQSGRMSVGSFSKEV- 170
Query: 327 KSEAGRNMTLDHVRASLVQL------------------------DFEKIIEIAQNEEVES 362
K+E G + + V L +L DFE II + + E+++
Sbjct: 171 KTEDGHPLLQEIVVECLGKLSSSSSSSSSSLPAFVIEMDGSYRVDFESIISVPRYHEMKA 230
Query: 363 VVSKRYGRDAYRIFR-LLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLME 418
V + YG + ++F LL K L ET +I +E++ A + L+ + K GY+ ME
Sbjct: 231 AVKRTYGEEFSQMFNYLLEKEDCLFETSEIVGAVEIEEEAALRGLFDMRKGGYVRME 287
>gi|409046168|gb|EKM55648.1| hypothetical protein PHACADRAFT_121372 [Phanerochaete carnosa
HHB-10118-sp]
Length = 541
Score = 101 bits (252), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 127/511 (24%), Positives = 217/511 (42%), Gaps = 68/511 (13%)
Query: 12 HVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQ 71
+IT FG L AK LL +G L + R++ L + ++VL+Q N + Q
Sbjct: 12 QIITREFGPLTAKAAAVLLHRGRLPLAQIIRFSGLRPRTARTCVIVLVQHNVLWH---AQ 68
Query: 72 PDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTLKQM 131
D + + NT D L R+R+ ++ Q F + E+VQ +L++G+L +
Sbjct: 69 TDTDGEVLEFNT------DECLMRLRYGRYAWQAEQLFGKVGAEIVQLILDNGKLRRPDV 122
Query: 132 FDRAKSSEKEGNLVDLDSL-RETLVKLVTAHYVERCPASEPLLMPISEEEGPARKKGSKS 190
R + V SL + KLV A Y++ P++ +L S + + +
Sbjct: 123 ISRLSIYDP----VKAHSLYSQAFHKLVEASYLK--PST--VLSHQSPRDKRIQYGAEEK 174
Query: 191 AKKIGEPETIE-QQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGEKRKHDVLEL 249
AK G P E +Q E A + + +E+ S+ + + + DV++
Sbjct: 175 AKLSGFPTAKELRQAKEVAEARLRREEEEAEKIGTKRKAREQRSHRLKKRKTTEEDVVDD 234
Query: 250 DECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQATSSAEKKVK 309
D V +R N E F +R+K D VR +D AA V+ A L++T + + K+
Sbjct: 235 D---------VYFRINCERFNIHVRNKIIEDAVRERYNDSAALVMRAALKSTEAKQLKLT 285
Query: 310 TKNSVPLSLSSIYEEVIKSE---------------------------------AGRNMTL 336
S P SL++I + + E AG+ +
Sbjct: 286 DVRSDPTSLANIATHISEDEDLSIGLAIGKRPSQMAMLKDYCGILAAADNPTPAGKAASF 345
Query: 337 DHVRASLVQLDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTF 396
+ S VQ++FE I + +E+V +RYG D RI LL +G+L E +IS T
Sbjct: 346 VSLNGSKVQVEFEIIDNRLRRRILEAVTRERYGDDGVRIISLLLSTGKLDEK-QISKTGM 404
Query: 397 VEKKDAPKILYKLWKDGYLLMEKLVVTGARQS--QFLLWKVNRQILWKHVLDEMFHAALN 454
+ KD +L + D + ++++ + R F LW V+ Q + ++ ++ N
Sbjct: 405 MAPKDVRPLLSAMAADSLISLQEVPKSADRNPARTFFLWYVDLQKAYTVLVGSLYKTLYN 464
Query: 455 LSLRVSYELDREKELLN--LPADKRTGPLQD 483
+ R E +E+ LL L +RT +QD
Sbjct: 465 VITRRKSE--QEEPLLKAVLEKRQRTDVMQD 493
>gi|348587154|ref|XP_003479333.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC3-like [Cavia
porcellus]
Length = 534
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 109/498 (21%), Positives = 211/498 (42%), Gaps = 66/498 (13%)
Query: 2 LTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQ 61
+T+ K ++ HFG++V K+ L++ G + + T S +QVK AL VLIQ
Sbjct: 1 MTQAEIKLCSLLLQEHFGEIVEKIGVHLIKTGSQPLRVIVHDTGTSLDQVKKALCVLIQH 60
Query: 62 NCVQAFTTEQPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLL 121
N V + + +Y +L +RF +++ + +V+ LL
Sbjct: 61 NLVI---------YQVHKRGVVEYEAQCSRVLRMLRFPRYIYTTKALYGDTGELIVEELL 111
Query: 122 EHGRLTL----KQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPIS 177
+G++T+ K++ DR + ++G +D + T V+L +V+RCP + P +
Sbjct: 112 LNGKMTMSAVVKKVADRLTDTMEDGKTMDYAEVSNTFVQLADTRFVQRCPM---VHAPEN 168
Query: 178 EEEGPARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVT 237
+ GP P VV + S++ G++ ++S+
Sbjct: 169 SDTGP--------------PPPAPSLVVNEKDMYLVPKLSLIGK-----GKRRRSSDEDA 209
Query: 238 PGE-KRKHDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSA 296
GE K K D + + ++ N + F + R + ++ V +D ++ ++ A
Sbjct: 210 AGEPKAKKPKRTTDNKEPTPDDGIYWQTNLDRFHQHFRDQAIVNAVANRMDQTSSEIVRA 269
Query: 297 MLQATSSAEKKVKTKNSVPLSLSSIYEEVIKS-EAGRNMT---------------LDHVR 340
ML+ + +V T + P + E+ +S G N++ L+ V
Sbjct: 270 MLRMS-----EVTTSSDAPFTQPLSSNEIFRSLPVGYNISKQVLDQYLTLLADDPLEFVG 324
Query: 341 AS------LVQLDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDT 394
S + ++F K + +ESV+ +R+G RIFRL+ + + LE ++ D
Sbjct: 325 KSGDSGGGMYVINFHKALASLATATLESVIQERFGSRCARIFRLVLQK-KHLEQKQVEDF 383
Query: 395 TFVEKKDAPKILYKLWKDGYLLMEKLVVTG--ARQSQFLLWKVNRQILWKHVLDEMFHAA 452
+ K+A +LYK+ + ++ ++++ T A F L+ VN + +L + +
Sbjct: 384 AMIPAKEAKDMLYKMLSENFISLQEIPKTPDHAPSRTFYLYTVNVLSAARMLLHRCYKSV 443
Query: 453 LNLSLRVSYELDREKELL 470
NL R +E K LL
Sbjct: 444 TNLIERRQFETKENKRLL 461
>gi|198278473|ref|NP_083201.1| DNA-directed RNA polymerase III subunit RPC3 [Mus musculus]
gi|51703312|sp|Q9D483.1|RPC3_MOUSE RecName: Full=DNA-directed RNA polymerase III subunit RPC3;
Short=RNA polymerase III subunit C3; AltName:
Full=DNA-directed RNA polymerase III subunit C
gi|12855605|dbj|BAB30395.1| unnamed protein product [Mus musculus]
gi|148706970|gb|EDL38917.1| mCG14870 [Mus musculus]
gi|187956591|gb|AAI51029.1| Polymerase (RNA) III (DNA directed) polypeptide C [Mus musculus]
gi|223462077|gb|AAI47486.1| Polymerase (RNA) III (DNA directed) polypeptide C [Mus musculus]
Length = 533
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 102/486 (20%), Positives = 205/486 (42%), Gaps = 65/486 (13%)
Query: 13 VITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQP 72
++ HFG++V K+ L+R G + + T+ S +QVK AL VLI N V +
Sbjct: 12 LLQEHFGEIVEKIGVHLVRTGSQPLRVIAHDTKASLDQVKKALCVLIHHNLVLYHVHK-- 69
Query: 73 DGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTL---- 128
+ +Y +L +R+ +++ + +V+ LL +G++T+
Sbjct: 70 -------RGVVEYEAQCSRVLRMLRYPRYIYTTKTLYGDTGELIVEELLLNGKMTMSAVV 122
Query: 129 KQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEGPARKKGS 188
K++ DR + ++G +D + V+L H+V+RCP L+P ++
Sbjct: 123 KKVADRLTETMEDGKTMDYAEVSNAFVRLADTHFVQRCP-----LVPDTD---------- 167
Query: 189 KSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGEKRKHDVLE 248
+ G P V+ + S++ G++ ++S+ GE +
Sbjct: 168 --SSDRGPPPPAPTLVINEKDMYLVPKLSLIGK-----GKRRRSSDEDATGEPKAKKPRY 220
Query: 249 LDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQATSSAEKKV 308
D + + + ++ N + F + R + + V +D ++ ++ ML+ + ++
Sbjct: 221 TDNKEPSPDDGIYWQVNLDRFHQHFRDQAIVSAVANRMDQTSSEIVRTMLRMS-----EI 275
Query: 309 KTKNSVPLSLSSIYEEVIKS-EAGRNMT---LDHVRASLVQ------------------L 346
T +S P + E+ +S G N++ LD L +
Sbjct: 276 TTPSSAPYTQPLSSNEIFRSLPVGYNISKQVLDQYLTLLADDPLEFIGKSGDSGGGMFVI 335
Query: 347 DFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKIL 406
+ K + +ESV+ +R+G RIFRL+ + + LE ++ D + K+A +L
Sbjct: 336 NLHKALASLATATLESVIQERFGSRCARIFRLVLQK-KHLEQKQVEDFAMIPAKEAKDML 394
Query: 407 YKLWKDGYLLMEKLVVTG--ARQSQFLLWKVNRQILWKHVLDEMFHAALNLSLRVSYELD 464
YK+ + ++L++++ T A F L+ VN + +L + + NL R +E
Sbjct: 395 YKMLSENFILLQEIPKTPDHAPSRTFYLYTVNVLSAARMLLHRCYKSIANLIERRQFETK 454
Query: 465 REKELL 470
K LL
Sbjct: 455 ENKRLL 460
>gi|402855946|ref|XP_003892569.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC3 isoform 1
[Papio anubis]
Length = 534
Score = 100 bits (250), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 111/498 (22%), Positives = 215/498 (43%), Gaps = 66/498 (13%)
Query: 2 LTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQ 61
+T+ K ++ HFG++V K+ L+R G + + T S +QVK AL VLIQ
Sbjct: 1 MTQAEIKLCSLLLQEHFGEIVEKIGVHLIRTGSQPLRVIAHDTGTSLDQVKKALCVLIQH 60
Query: 62 NCVQAFTTEQPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLL 121
N V + + +Y +L +R+ +++ + +V+ LL
Sbjct: 61 NLV---------SYQVHKRGVVEYEAQCSRVLRMLRYPRYIYTTKTLYSDTGELIVEELL 111
Query: 122 EHGRLTL----KQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPIS 177
+G+LT+ K++ DR + ++G +D + T V+L H+V+RCP+ +P +
Sbjct: 112 LNGKLTMSAVVKKVADRLTETMEDGKTMDYAEVSNTFVRLADTHFVQRCPS-----VPTT 166
Query: 178 EEEGPARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVT 237
E P + + I E + +P + S++ G++ ++S+
Sbjct: 167 ENSDPGPPPPAPTL-VINEKDMY-------LVP----KLSLIGQ-----GKRRRSSDEDA 209
Query: 238 PGE-KRKHDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSA 296
GE K K D + + ++AN + F + R + + V +D ++ ++
Sbjct: 210 AGEPKAKRPKHTTDNKEPIPDDGIYWQANLDRFHQHFRDQAIVSAVANRMDQTSSEIVRT 269
Query: 297 MLQATSSAEKKVKTKNSVPLSLSSIYEEVIKS-EAGRNMT---------------LDHVR 340
ML+ + ++ T +S P + E+ +S G N++ L+ V
Sbjct: 270 MLRMS-----EITTSSSAPFTQPLSSNEIFRSLPVGYNISKQVLDQYLTLLADDPLEFVG 324
Query: 341 AS------LVQLDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDT 394
S + ++ K + +ESVV +R+G RIFRL+ + + LE ++ D
Sbjct: 325 KSGDSGGGMYVINLHKALASLATATLESVVQERFGSRCARIFRLVLQK-KHLEQKQVEDF 383
Query: 395 TFVEKKDAPKILYKLWKDGYLLMEKLVVTG--ARQSQFLLWKVNRQILWKHVLDEMFHAA 452
+ K+A +LYK+ + ++ ++++ T A F L+ VN + +L + +
Sbjct: 384 AMIPAKEAKDMLYKMLSENFMSLQEIPKTPDHAPSRTFYLYTVNILSAARMLLHRCYKSI 443
Query: 453 LNLSLRVSYELDREKELL 470
NL R +E K LL
Sbjct: 444 ANLIERRQFETKENKRLL 461
>gi|402855948|ref|XP_003892570.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC3 isoform 2
[Papio anubis]
Length = 545
Score = 100 bits (250), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 111/498 (22%), Positives = 215/498 (43%), Gaps = 66/498 (13%)
Query: 2 LTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQ 61
+T+ K ++ HFG++V K+ L+R G + + T S +QVK AL VLIQ
Sbjct: 12 MTQAEIKLCSLLLQEHFGEIVEKIGVHLIRTGSQPLRVIAHDTGTSLDQVKKALCVLIQH 71
Query: 62 NCVQAFTTEQPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLL 121
N V + + +Y +L +R+ +++ + +V+ LL
Sbjct: 72 NLV---------SYQVHKRGVVEYEAQCSRVLRMLRYPRYIYTTKTLYSDTGELIVEELL 122
Query: 122 EHGRLTL----KQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPIS 177
+G+LT+ K++ DR + ++G +D + T V+L H+V+RCP+ +P +
Sbjct: 123 LNGKLTMSAVVKKVADRLTETMEDGKTMDYAEVSNTFVRLADTHFVQRCPS-----VPTT 177
Query: 178 EEEGPARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVT 237
E P + + I E + +P + S++ G++ ++S+
Sbjct: 178 ENSDPGPPPPAPTL-VINEKDMY-------LVP----KLSLIGQ-----GKRRRSSDEDA 220
Query: 238 PGE-KRKHDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSA 296
GE K K D + + ++AN + F + R + + V +D ++ ++
Sbjct: 221 AGEPKAKRPKHTTDNKEPIPDDGIYWQANLDRFHQHFRDQAIVSAVANRMDQTSSEIVRT 280
Query: 297 MLQATSSAEKKVKTKNSVPLSLSSIYEEVIKS-EAGRNMT---------------LDHVR 340
ML+ + ++ T +S P + E+ +S G N++ L+ V
Sbjct: 281 MLRMS-----EITTSSSAPFTQPLSSNEIFRSLPVGYNISKQVLDQYLTLLADDPLEFVG 335
Query: 341 AS------LVQLDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDT 394
S + ++ K + +ESVV +R+G RIFRL+ + + LE ++ D
Sbjct: 336 KSGDSGGGMYVINLHKALASLATATLESVVQERFGSRCARIFRLVLQK-KHLEQKQVEDF 394
Query: 395 TFVEKKDAPKILYKLWKDGYLLMEKLVVTG--ARQSQFLLWKVNRQILWKHVLDEMFHAA 452
+ K+A +LYK+ + ++ ++++ T A F L+ VN + +L + +
Sbjct: 395 AMIPAKEAKDMLYKMLSENFMSLQEIPKTPDHAPSRTFYLYTVNILSAARMLLHRCYKSI 454
Query: 453 LNLSLRVSYELDREKELL 470
NL R +E K LL
Sbjct: 455 ANLIERRQFETKENKRLL 472
>gi|355558345|gb|EHH15125.1| hypothetical protein EGK_01174 [Macaca mulatta]
gi|355745608|gb|EHH50233.1| hypothetical protein EGM_01026 [Macaca fascicularis]
gi|380808874|gb|AFE76312.1| DNA-directed RNA polymerase III subunit RPC3 [Macaca mulatta]
gi|383413173|gb|AFH29800.1| DNA-directed RNA polymerase III subunit RPC3 [Macaca mulatta]
gi|384944846|gb|AFI36028.1| DNA-directed RNA polymerase III subunit RPC3 [Macaca mulatta]
Length = 534
Score = 100 bits (250), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 111/498 (22%), Positives = 215/498 (43%), Gaps = 66/498 (13%)
Query: 2 LTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQ 61
+T+ K ++ HFG++V K+ L+R G + + T S +QVK AL VLIQ
Sbjct: 1 MTQAEIKLCSLLLQEHFGEIVEKIGVHLIRTGSQPLRVIAHDTGTSLDQVKKALCVLIQH 60
Query: 62 NCVQAFTTEQPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLL 121
N V + + +Y +L +R+ +++ + +V+ LL
Sbjct: 61 NLV---------SYQVHKRGVVEYEAQCSRVLRMLRYPRYIYTTKTLYSDTGELIVEELL 111
Query: 122 EHGRLTL----KQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPIS 177
+G+LT+ K++ DR + ++G +D + T V+L H+V+RCP+ +P +
Sbjct: 112 LNGKLTMSAVVKKVADRLTETMEDGKTMDYAEVSNTFVRLADTHFVQRCPS-----VPTT 166
Query: 178 EEEGPARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVT 237
E P + + I E + +P + S++ G++ ++S+
Sbjct: 167 ENSDPGPPPPAPTL-VINEKDMY-------LVP----KLSLIGK-----GKRRRSSDEDA 209
Query: 238 PGE-KRKHDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSA 296
GE K K D + + ++AN + F + R + + V +D ++ ++
Sbjct: 210 AGEPKAKRPKHTTDNKEPIPDDGIYWQANLDRFHQHFRDQAIVSAVANRMDQTSSEIVRT 269
Query: 297 MLQATSSAEKKVKTKNSVPLSLSSIYEEVIKS-EAGRNMT---------------LDHVR 340
ML+ + ++ T +S P + E+ +S G N++ L+ V
Sbjct: 270 MLRMS-----EITTSSSAPFTQPLSSNEIFRSLPVGYNISKQVLDQYLTLLADDPLEFVG 324
Query: 341 AS------LVQLDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDT 394
S + ++ K + +ESVV +R+G RIFRL+ + + LE ++ D
Sbjct: 325 KSGDSGGGMYVINLHKALASLATATLESVVQERFGSRCARIFRLVLQK-KHLEQKQVEDF 383
Query: 395 TFVEKKDAPKILYKLWKDGYLLMEKLVVTG--ARQSQFLLWKVNRQILWKHVLDEMFHAA 452
+ K+A +LYK+ + ++ ++++ T A F L+ VN + +L + +
Sbjct: 384 AMIPAKEAKDMLYKMLSENFMSLQEIPKTPDHAPSRTFYLYTVNILSAARMLLHRCYKSI 443
Query: 453 LNLSLRVSYELDREKELL 470
NL R +E K LL
Sbjct: 444 ANLIERRQFETKENKRLL 461
>gi|355389073|gb|AER62479.1| hypothetical protein [Aegilops speltoides var. ligustica]
Length = 218
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 69/225 (30%), Positives = 111/225 (49%), Gaps = 22/225 (9%)
Query: 163 VERCPASEPLLMPISEEEGP-ARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTN 221
VERCP +EP P + + AR+ K+A+++ ++EQ+VV A + RF +
Sbjct: 1 VERCPKAEPYFNPQEDXQSTGARRXVPKTAEEVL---SLEQKVVNTATLSDPERFFEIPY 57
Query: 222 VESDVGEKEKNSNNVTPGEKRKHDVLELDE--CGVADEQSVVYRANFEGFIRRLRHKGCI 279
+ D + +N G KRKH E+DE E V++R NFE FI L+ K C
Sbjct: 58 IMEDASKTNDCPHNAVAGAKRKHGAFEVDEELNSTIAENEVLWRVNFEKFIFCLKKKFCA 117
Query: 280 DHVRAHLDDGAANVLSAMLQATSSAEKKVKTKNSVPLSLSSIYEEVIKSEAGRNMTLDHV 339
D + L G + + +A + K NSV S++ I E++ + E G M++ +
Sbjct: 118 DRKKPKLKVGTHPIWESFFEANLTD----KDTNSVTSSINGILEKLGQKEGGAAMSIGDI 173
Query: 340 RASLVQL------------DFEKIIEIAQNEEVESVVSKRYGRDA 372
+ L+ L D K++E +NEE+ES V K+YG++A
Sbjct: 174 KPVLLDLQCTTSDGEEFTFDLRKMVEACRNEEIESXVKKKYGQEA 218
>gi|332809810|ref|XP_513732.3| PREDICTED: DNA-directed RNA polymerase III subunit RPC3 isoform 6
[Pan troglodytes]
Length = 545
Score = 100 bits (248), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 109/498 (21%), Positives = 215/498 (43%), Gaps = 66/498 (13%)
Query: 2 LTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQ 61
+T+ K ++ HFG++V K+ L+R G + + T S +QVK AL VL+Q
Sbjct: 12 MTQAEIKLCSLLLQEHFGEIVEKIGVHLIRTGSQPLRVIAHDTGTSLDQVKKALCVLVQH 71
Query: 62 NCVQAFTTEQPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLL 121
N V + + +Y +L +R+ +++ + +V+ LL
Sbjct: 72 NLV---------SYQVHKRGVVEYEAQCSRVLRMLRYPRYIYTTKTLYSDTGELIVEELL 122
Query: 122 EHGRLTL----KQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPIS 177
+G+LT+ K++ DR + ++G +D + T V+L H+V+RCP+ +P +
Sbjct: 123 LNGKLTMSAVVKKVADRLTETMEDGKTMDYAEVSNTFVRLADTHFVQRCPS-----VPTT 177
Query: 178 EEEGPARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVT 237
E P + + I E + +P + S++ G++ ++S+
Sbjct: 178 ENSDPGPPPPAPTL-VINEKDMY-------LVP----KLSLIGK-----GKRRRSSDEDA 220
Query: 238 PGE-KRKHDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSA 296
GE K K D + + ++AN + F + R + + V +D ++ ++
Sbjct: 221 AGEPKAKRPKYTTDNKEPIPDDGIYWQANLDRFHQHFRDQAIVSAVANRMDQTSSEIVRT 280
Query: 297 MLQATSSAEKKVKTKNSVPLSLSSIYEEVIKS-EAGRNMT---------------LDHVR 340
ML+ + ++ T +S P + E+ +S G N++ L+ V
Sbjct: 281 MLRMS-----EITTSSSAPFTQPLSSNEIFRSLPVGYNISKQVLDQYLTLLADDPLEFVG 335
Query: 341 AS------LVQLDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDT 394
S + ++ K + +ESVV +R+G RIFRL+ + + +E ++ D
Sbjct: 336 KSGDSGGGMYVINLHKALASLATATLESVVQERFGSRCARIFRLVLQK-KHIEQKQVEDF 394
Query: 395 TFVEKKDAPKILYKLWKDGYLLMEKLVVTG--ARQSQFLLWKVNRQILWKHVLDEMFHAA 452
+ K+A +LYK+ + ++ ++++ T A F L+ VN + +L + +
Sbjct: 395 AMIPAKEAKDMLYKMLSENFMSLQEIPKTPDHAPSRTFYLYTVNILSAARMLLHRCYKSI 454
Query: 453 LNLSLRVSYELDREKELL 470
NL R +E K LL
Sbjct: 455 ANLIERRQFETKENKRLL 472
>gi|332237888|ref|XP_003268139.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC3 isoform 1
[Nomascus leucogenys]
Length = 555
Score = 100 bits (248), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 109/498 (21%), Positives = 215/498 (43%), Gaps = 66/498 (13%)
Query: 2 LTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQ 61
+T+ K ++ HFG++V K+ L+R G + + T S +QVK AL VL+Q
Sbjct: 22 MTQAEIKLCSLLLQEHFGEIVEKIGVHLIRTGSQPLRVIAHDTGTSLDQVKKALCVLVQH 81
Query: 62 NCVQAFTTEQPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLL 121
N V + + +Y +L +R+ +++ + +V+ LL
Sbjct: 82 NLV---------SYQVHKRGVVEYEAQCSRVLRMLRYPRYIYTTKTLYSDTGELIVEELL 132
Query: 122 EHGRLTL----KQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPIS 177
+G+LT+ K++ DR + ++G +D + T V+L H+V+RCP+ +P +
Sbjct: 133 LNGKLTMSAVVKKVADRLTETMEDGKTMDYAEVSNTFVRLADTHFVQRCPS-----VPTT 187
Query: 178 EEEGPARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVT 237
E P + + I E + +P + S++ G++ ++S+
Sbjct: 188 ENSDPGPPPPAPTL-VINEKDMY-------LVP----KLSLIGK-----GKRRRSSDEDA 230
Query: 238 PGE-KRKHDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSA 296
GE K K D + + ++AN + F + R + + V +D ++ ++
Sbjct: 231 AGEPKAKRPKHTTDNKEPIPDDGIYWQANLDRFHQHFRDQAIVSAVANRMDQTSSEIVRT 290
Query: 297 MLQATSSAEKKVKTKNSVPLSLSSIYEEVIKS-EAGRNMT---------------LDHVR 340
ML+ + ++ T +S P + E+ +S G N++ L+ V
Sbjct: 291 MLRMS-----EITTSSSAPFTQPLSSNEIFRSLPVGYNISKQVLDQYLTLLADDPLEFVG 345
Query: 341 AS------LVQLDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDT 394
S + ++ K + +ESVV +R+G RIFRL+ + + +E ++ D
Sbjct: 346 KSGDSGGGMYVINLHKALASLATATLESVVQERFGSRCARIFRLVLQK-KHIEQKQVEDF 404
Query: 395 TFVEKKDAPKILYKLWKDGYLLMEKLVVTG--ARQSQFLLWKVNRQILWKHVLDEMFHAA 452
+ K+A +LYK+ + ++ ++++ T A F L+ VN + +L + +
Sbjct: 405 AMIPAKEAKDMLYKMLSENFMSLQEIPKTPDHAPSRTFYLYTVNTLSAARMLLHRCYKSI 464
Query: 453 LNLSLRVSYELDREKELL 470
NL R +E K LL
Sbjct: 465 ANLIERRQFETKENKRLL 482
>gi|148234765|ref|NP_001086474.1| polymerase (RNA) III (DNA directed) polypeptide C (62kD) [Xenopus
laevis]
gi|49670421|gb|AAH75179.1| Polr3c-prov protein [Xenopus laevis]
Length = 529
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 111/483 (22%), Positives = 212/483 (43%), Gaps = 63/483 (13%)
Query: 13 VITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQP 72
++ H+G++VA+V L+R G + + T S +QVK AL VLIQ N V ++
Sbjct: 12 LLEEHYGEIVARVGTFLIRTGNQPLRVIVNETGTSLDQVKKALCVLIQHNLVTYQLNKR- 70
Query: 73 DGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTL---- 128
GF + Y D LH +R+ +++ + +V+ L +G++TL
Sbjct: 71 -GFVE-------YRAHCDRFLHILRYPRYIYTAKTLYGDTGELIVEELQLNGKMTLSAVV 122
Query: 129 KQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEGPARKKGS 188
K++ DR + ++ ++ + T L H+V+RCP G K +
Sbjct: 123 KKVADRLTETMEDSKSMEYSEVSATFTHLADTHFVQRCP-------------GLQEKDAT 169
Query: 189 KSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVE-SDVGEKEKNSNNVTPGEKRKHDVL 247
+ G P + L M+ ++ V + G++ ++S++ G + K
Sbjct: 170 E-----GRPP------LAPTLQMDEKEMYIIPKVNLTGRGKRRRSSDDDDGGSQAKR--- 215
Query: 248 ELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQ------AT 301
+ + V+ + + ++ N E F + R + I V +D ++ ++ ML+ ++
Sbjct: 216 QKKDTEVSQDDGIYWQVNTERFHQHFRDQAIISAVSNKMDQTSSEIVRTMLRMSEVTTSS 275
Query: 302 SSAEKKVKTKNSVPLSLSSIYEEVIKSEAGRNMT------LDHVRAS------LVQLDFE 349
S+A + + N + SL + Y V K + +T L++V S + ++
Sbjct: 276 SAAYTQPLSSNEIFRSLPTGY-NVSKQVLDQYLTLLADDPLEYVGRSGDSGGGMFVINLH 334
Query: 350 KIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKL 409
K + +ES+V +R+G + RIFRLL + R LE ++ D V K+A ++LYK+
Sbjct: 335 KAVASLATATLESLVQERFGSRSARIFRLLLRK-RHLEQKQVEDLAMVPAKEAKEMLYKM 393
Query: 410 WKDGYLLMEKLVVTG--ARQSQFLLWKVNRQILWKHVLDEMFHAALNLSLRVSYELDREK 467
+ ++++ T A F L+ VN + +L + NL R ++ K
Sbjct: 394 LSQNLVSLQEIPKTPDHAPSRTFYLYTVNTLPCARMLLQRCYKTVANLIERRQFDTKENK 453
Query: 468 ELL 470
LL
Sbjct: 454 RLL 456
>gi|21359969|ref|NP_006459.3| DNA-directed RNA polymerase III subunit RPC3 [Homo sapiens]
gi|114558425|ref|XP_001161607.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC3 isoform 5
[Pan troglodytes]
gi|410171277|ref|XP_003960209.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC3-like
isoform 1 [Homo sapiens]
gi|60393871|sp|Q9BUI4.1|RPC3_HUMAN RecName: Full=DNA-directed RNA polymerase III subunit RPC3;
Short=RNA polymerase III subunit C3; AltName:
Full=DNA-directed RNA polymerase III subunit C; AltName:
Full=RNA polymerase III 62 kDa subunit; Short=RPC62
gi|325053851|pdb|2XUB|A Chain A, Human Rpc62 Subunit Structure
gi|325053852|pdb|2XV4|S Chain S, Structure Of Human Rpc62 (Partial)
gi|12803519|gb|AAH02586.1| Polymerase (RNA) III (DNA directed) polypeptide C (62kD) [Homo
sapiens]
gi|20159753|gb|AAM12033.1| RNA polymerase III subunit RPC62 [Homo sapiens]
gi|119591841|gb|EAW71435.1| polymerase (RNA) III (DNA directed) polypeptide C (62kD), isoform
CRA_b [Homo sapiens]
gi|119591842|gb|EAW71436.1| polymerase (RNA) III (DNA directed) polypeptide C (62kD), isoform
CRA_b [Homo sapiens]
gi|208967092|dbj|BAG73560.1| polymerase (RNA) III (DNA directed) polypeptide C [synthetic
construct]
gi|410225476|gb|JAA09957.1| polymerase (RNA) III (DNA directed) polypeptide C (62kD) [Pan
troglodytes]
gi|410258100|gb|JAA17017.1| polymerase (RNA) III (DNA directed) polypeptide C (62kD) [Pan
troglodytes]
gi|410290358|gb|JAA23779.1| polymerase (RNA) III (DNA directed) polypeptide C (62kD) [Pan
troglodytes]
gi|410349833|gb|JAA41520.1| polymerase (RNA) III (DNA directed) polypeptide C (62kD) [Pan
troglodytes]
Length = 534
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 109/498 (21%), Positives = 215/498 (43%), Gaps = 66/498 (13%)
Query: 2 LTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQ 61
+T+ K ++ HFG++V K+ L+R G + + T S +QVK AL VL+Q
Sbjct: 1 MTQAEIKLCSLLLQEHFGEIVEKIGVHLIRTGSQPLRVIAHDTGTSLDQVKKALCVLVQH 60
Query: 62 NCVQAFTTEQPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLL 121
N V + + +Y +L +R+ +++ + +V+ LL
Sbjct: 61 NLV---------SYQVHKRGVVEYEAQCSRVLRMLRYPRYIYTTKTLYSDTGELIVEELL 111
Query: 122 EHGRLTL----KQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPIS 177
+G+LT+ K++ DR + ++G +D + T V+L H+V+RCP+ +P +
Sbjct: 112 LNGKLTMSAVVKKVADRLTETMEDGKTMDYAEVSNTFVRLADTHFVQRCPS-----VPTT 166
Query: 178 EEEGPARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVT 237
E P + + I E + +P + S++ G++ ++S+
Sbjct: 167 ENSDPGPPPPAPTL-VINEKDMY-------LVP----KLSLIGK-----GKRRRSSDEDA 209
Query: 238 PGE-KRKHDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSA 296
GE K K D + + ++AN + F + R + + V +D ++ ++
Sbjct: 210 AGEPKAKRPKYTTDNKEPIPDDGIYWQANLDRFHQHFRDQAIVSAVANRMDQTSSEIVRT 269
Query: 297 MLQATSSAEKKVKTKNSVPLSLSSIYEEVIKS-EAGRNMT---------------LDHVR 340
ML+ + ++ T +S P + E+ +S G N++ L+ V
Sbjct: 270 MLRMS-----EITTSSSAPFTQPLSSNEIFRSLPVGYNISKQVLDQYLTLLADDPLEFVG 324
Query: 341 AS------LVQLDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDT 394
S + ++ K + +ESVV +R+G RIFRL+ + + +E ++ D
Sbjct: 325 KSGDSGGGMYVINLHKALASLATATLESVVQERFGSRCARIFRLVLQK-KHIEQKQVEDF 383
Query: 395 TFVEKKDAPKILYKLWKDGYLLMEKLVVTG--ARQSQFLLWKVNRQILWKHVLDEMFHAA 452
+ K+A +LYK+ + ++ ++++ T A F L+ VN + +L + +
Sbjct: 384 AMIPAKEAKDMLYKMLSENFMSLQEIPKTPDHAPSRTFYLYTVNILSAARMLLHRCYKSI 443
Query: 453 LNLSLRVSYELDREKELL 470
NL R +E K LL
Sbjct: 444 ANLIERRQFETKENKRLL 461
>gi|410171279|ref|XP_003960210.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC3-like
isoform 2 [Homo sapiens]
Length = 547
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 109/498 (21%), Positives = 215/498 (43%), Gaps = 66/498 (13%)
Query: 2 LTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQ 61
+T+ K ++ HFG++V K+ L+R G + + T S +QVK AL VL+Q
Sbjct: 14 MTQAEIKLCSLLLQEHFGEIVEKIGVHLIRTGSQPLRVIAHDTGTSLDQVKKALCVLVQH 73
Query: 62 NCVQAFTTEQPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLL 121
N V + + +Y +L +R+ +++ + +V+ LL
Sbjct: 74 NLV---------SYQVHKRGVVEYEAQCSRVLRMLRYPRYIYTTKTLYSDTGELIVEELL 124
Query: 122 EHGRLTL----KQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPIS 177
+G+LT+ K++ DR + ++G +D + T V+L H+V+RCP+ +P +
Sbjct: 125 LNGKLTMSAVVKKVADRLTETMEDGKTMDYAEVSNTFVRLADTHFVQRCPS-----VPTT 179
Query: 178 EEEGPARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVT 237
E P + + I E + +P + S++ G++ ++S+
Sbjct: 180 ENSDPGPPPPAPTL-VINEKDMY-------LVP----KLSLIGK-----GKRRRSSDEDA 222
Query: 238 PGE-KRKHDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSA 296
GE K K D + + ++AN + F + R + + V +D ++ ++
Sbjct: 223 AGEPKAKRPKYTTDNKEPIPDDGIYWQANLDRFHQHFRDQAIVSAVANRMDQTSSEIVRT 282
Query: 297 MLQATSSAEKKVKTKNSVPLSLSSIYEEVIKS-EAGRNMT---------------LDHVR 340
ML+ + ++ T +S P + E+ +S G N++ L+ V
Sbjct: 283 MLRMS-----EITTSSSAPFTQPLSSNEIFRSLPVGYNISKQVLDQYLTLLADDPLEFVG 337
Query: 341 AS------LVQLDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDT 394
S + ++ K + +ESVV +R+G RIFRL+ + + +E ++ D
Sbjct: 338 KSGDSGGGMYVINLHKALASLATATLESVVQERFGSRCARIFRLVLQK-KHIEQKQVEDF 396
Query: 395 TFVEKKDAPKILYKLWKDGYLLMEKLVVTG--ARQSQFLLWKVNRQILWKHVLDEMFHAA 452
+ K+A +LYK+ + ++ ++++ T A F L+ VN + +L + +
Sbjct: 397 AMIPAKEAKDMLYKMLSENFMSLQEIPKTPDHAPSRTFYLYTVNILSAARMLLHRCYKSI 456
Query: 453 LNLSLRVSYELDREKELL 470
NL R +E K LL
Sbjct: 457 ANLIERRQFETKENKRLL 474
>gi|4753153|emb|CAB41919.1| RNA polymerase III subunit [Homo sapiens]
Length = 534
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 109/498 (21%), Positives = 215/498 (43%), Gaps = 66/498 (13%)
Query: 2 LTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQ 61
+T+ K ++ HFG++V K+ L+R G + + T S +QVK AL VL+Q
Sbjct: 1 MTQAEIKLCSLLLQEHFGEIVEKIGVHLIRTGSQPLRVIAHDTGTSLDQVKKALCVLVQH 60
Query: 62 NCVQAFTTEQPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLL 121
N V + + +Y +L +R+ +++ + +V+ LL
Sbjct: 61 NLV---------SYQVHKRGVVEYEAQCSRVLRMLRYPRYIYTTKTLYSDTGELIVEELL 111
Query: 122 EHGRLTL----KQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPIS 177
+G+LT+ K++ DR + ++G +D + T V+L H+V+RCP+ +P +
Sbjct: 112 LNGKLTMSAVVKKVADRLTETMEDGKTMDYAEVSNTFVRLADTHFVQRCPS-----VPTT 166
Query: 178 EEEGPARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVT 237
E P + + I E + +P + S++ G++ ++S+
Sbjct: 167 ENSDPGPPPPAPTL-VINEKDMY-------LVP----KLSLIGK-----GKRRRSSDEDA 209
Query: 238 PGE-KRKHDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSA 296
GE K K D + + ++AN + F + R + + V +D ++ ++
Sbjct: 210 AGEPKAKRPKYTTDNKEPIPDDGIYWQANLDRFHQHFRDQAIVSAVANRMDQTSSEIVRT 269
Query: 297 MLQATSSAEKKVKTKNSVPLSLSSIYEEVIKS-EAGRNMT---------------LDHVR 340
ML+ + ++ T +S P + E+ +S G N++ L+ V
Sbjct: 270 MLRMS-----EITTSSSAPFTQPLSSNEIFRSLPVGYNISKQVLDQYLTLLADDPLEFVG 324
Query: 341 AS------LVQLDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDT 394
S + ++ K + +ESVV +R+G RIFRL+ + + +E ++ D
Sbjct: 325 KSGDSGGGMYVINLHKALASLATATLESVVQERFGSRCARIFRLVLQK-KHIEQKQVEDF 383
Query: 395 TFVEKKDAPKILYKLWKDGYLLMEKLVVTG--ARQSQFLLWKVNRQILWKHVLDEMFHAA 452
+ K+A +LYK+ + ++ ++++ T A F L+ VN + +L + +
Sbjct: 384 AMIPAKEAKDMLYKMLSENFMSLQEIPKTPDHAPSRTFYLYTVNILSAARMLLHRCYKSI 443
Query: 453 LNLSLRVSYELDREKELL 470
NL R +E K LL
Sbjct: 444 ANLIERRQFETKENKRLL 461
>gi|332237890|ref|XP_003268140.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC3 isoform 2
[Nomascus leucogenys]
Length = 534
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 107/487 (21%), Positives = 211/487 (43%), Gaps = 66/487 (13%)
Query: 13 VITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQP 72
++ HFG++V K+ L+R G + + T S +QVK AL VL+Q N V
Sbjct: 12 LLQEHFGEIVEKIGVHLIRTGSQPLRVIAHDTGTSLDQVKKALCVLVQHNLV-------- 63
Query: 73 DGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTL---- 128
+ + +Y +L +R+ +++ + +V+ LL +G+LT+
Sbjct: 64 -SYQVHKRGVVEYEAQCSRVLRMLRYPRYIYTTKTLYSDTGELIVEELLLNGKLTMSAVV 122
Query: 129 KQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEGPARKKGS 188
K++ DR + ++G +D + T V+L H+V+RCP+ +P +E P +
Sbjct: 123 KKVADRLTETMEDGKTMDYAEVSNTFVRLADTHFVQRCPS-----VPTTENSDPGPPPPA 177
Query: 189 KSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGE-KRKHDVL 247
+ I E + +P + S++ G++ ++S+ GE K K
Sbjct: 178 PTL-VINEKDMY-------LVP----KLSLIGK-----GKRRRSSDEDAAGEPKAKRPKH 220
Query: 248 ELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQATSSAEKK 307
D + + ++AN + F + R + + V +D ++ ++ ML+ + +
Sbjct: 221 TTDNKEPIPDDGIYWQANLDRFHQHFRDQAIVSAVANRMDQTSSEIVRTMLRMS-----E 275
Query: 308 VKTKNSVPLSLSSIYEEVIKS-EAGRNMT---------------LDHVRAS------LVQ 345
+ T +S P + E+ +S G N++ L+ V S +
Sbjct: 276 ITTSSSAPFTQPLSSNEIFRSLPVGYNISKQVLDQYLTLLADDPLEFVGKSGDSGGGMYV 335
Query: 346 LDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKI 405
++ K + +ESVV +R+G RIFRL+ + + +E ++ D + K+A +
Sbjct: 336 INLHKALASLATATLESVVQERFGSRCARIFRLVLQK-KHIEQKQVEDFAMIPAKEAKDM 394
Query: 406 LYKLWKDGYLLMEKLVVTG--ARQSQFLLWKVNRQILWKHVLDEMFHAALNLSLRVSYEL 463
LYK+ + ++ ++++ T A F L+ VN + +L + + NL R +E
Sbjct: 395 LYKMLSENFMSLQEIPKTPDHAPSRTFYLYTVNTLSAARMLLHRCYKSIANLIERRQFET 454
Query: 464 DREKELL 470
K LL
Sbjct: 455 KENKRLL 461
>gi|73981410|ref|XP_540277.2| PREDICTED: DNA-directed RNA polymerase III subunit RPC3 [Canis
lupus familiaris]
Length = 534
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 108/501 (21%), Positives = 214/501 (42%), Gaps = 72/501 (14%)
Query: 2 LTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQ 61
+T+ K ++ HFG++V K+ L+R G + + T S +QVK AL VLIQ
Sbjct: 1 MTQAEIKLCSLLLQEHFGEIVEKIGVHLIRTGSQPLRVIAHDTGTSLDQVKKALCVLIQH 60
Query: 62 NCVQAFTTEQPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLL 121
N V + + +Y +L +R+ +++ + +V+ LL
Sbjct: 61 NLVI---------YQVHKRGVVEYEAQCSRVLRMLRYPRYIYTAKTLYSDTGELIVEELL 111
Query: 122 EHGRLTL----KQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPIS 177
+G++T+ K++ DR + ++G +D + T V+L H+V+RCP +P +
Sbjct: 112 LNGKMTMSAVVKKVADRLTETMEDGKTMDYAEVSNTFVRLADTHFVQRCP-----WVPAT 166
Query: 178 EEEGPARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVT 237
E P + P + + +P + S++ G++ ++S+
Sbjct: 167 ENSDPGPLPPA--------PILVISEKDMYLVP----KLSLIGK-----GKRRRSSDEDA 209
Query: 238 PGEKR----KHDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANV 293
GE + KH+ D + + ++AN + F + R + + V +D ++ +
Sbjct: 210 AGEPKAKRPKHNT---DNKEPIPDDGIYWQANLDRFHQHFRDQAIVSAVANRMDQTSSEI 266
Query: 294 LSAMLQATSSAEKKVKTKNSVPLSLSSIYEEVIKS-EAGRNMT---------------LD 337
+ ML+ + ++ T ++ P + E+ +S G N++ L+
Sbjct: 267 VRTMLRMS-----EITTPSTAPFTQPLSSNEIFRSLPVGYNISKQVLDQYLTLLADDPLE 321
Query: 338 HVRAS------LVQLDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKI 391
V S + ++ K + +ESVV +R+G RIFRL+ + + LE ++
Sbjct: 322 FVGKSGDSGGGMYVINLHKALGSLATATLESVVQERFGSRCARIFRLVLQK-KHLEQKQV 380
Query: 392 SDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTG--ARQSQFLLWKVNRQILWKHVLDEMF 449
D + K+A +LYK+ ++ ++++ T A F L+ VN + +L +
Sbjct: 381 EDFAMIPAKEAKDMLYKMLSGNFISLQEIPKTPDHAPSRTFYLYTVNILSAARMLLHRCY 440
Query: 450 HAALNLSLRVSYELDREKELL 470
+ NL R +E K LL
Sbjct: 441 KSIANLIERRQFETKENKRLL 461
>gi|443690865|gb|ELT92883.1| hypothetical protein CAPTEDRAFT_158707 [Capitella teleta]
Length = 525
Score = 99.4 bits (246), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 105/490 (21%), Positives = 211/490 (43%), Gaps = 78/490 (15%)
Query: 13 VITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQP 72
++ HFG++ K+ LLRKG + + + + ++VK L LIQ V
Sbjct: 12 ILREHFGEVAEKIVNYLLRKGSTSLKPLTTECGFTLDKVKRCLAALIQHGIV-------- 63
Query: 73 DGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTLKQMF 132
F+ +Y DN+L + F +++ F + +++ LL G+LT+
Sbjct: 64 -TFSQHKAGFVEYFASVDNVLSYLFFPQYINCAKTLFGDESELIIEELLHQGQLTMSGTI 122
Query: 133 DR-------AKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEGPARK 185
+R A+SS+ D+ +R+ V L+ +V++C PLL P S+ PA
Sbjct: 123 NRVTQRLAQAESSQ------DVYGVRDKFVDLIKTQFVKQC----PLLTPDSKARSPAFA 172
Query: 186 KGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGEKRKHD 245
+ +++ P +A V ++ V K K S++ RK
Sbjct: 173 EDTEN-------------------PEQAFTVPQV-DLAGLVKRKRKISDDENEDHARKKR 212
Query: 246 VLE---LDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQAT- 301
LE ++CG ++ + + N F + LR + + V +D A +++ L+ +
Sbjct: 213 KLENSAAEKCG---DEGIYWTINHARFQQYLRDQAIVTAVSRKVDVRAGEIIACFLRISE 269
Query: 302 -SSAEKKVKTKNSVPLSLSSIYEEVIKSEAGRNMTLDHVRASLVQ--------------- 345
+A + + T ++ + I++ + K LD +V+
Sbjct: 270 MKTASESISTN---AITYNEIFQSLPKEMGITRQILDQYLRIIVEDASDFLQKTGDSGGG 326
Query: 346 ---LDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDA 402
++F++ + V+SV+ ++YG R++RLL+ G LE +I + + K+A
Sbjct: 327 MFAINFQRAFKHLCQAHVQSVIGEKYGSKCLRVYRLLAMKGH-LEQKQIEEMAMIPAKEA 385
Query: 403 PKILYKLWKDGYLLMEKLVVTG--ARQSQFLLWKVNRQILWKHVLDEMFHAALNLSLRVS 460
++LY L+ + + ++++ T A F L+ + + + +L + A LN+ LR +
Sbjct: 386 KEMLYSLFDEQLVTIKEVPKTPDHAPSRTFYLFGIQLNQVARMLLQKTTKAMLNVCLRRA 445
Query: 461 YELDREKELL 470
+E + + LL
Sbjct: 446 HETQQHRRLL 455
>gi|297663832|ref|XP_002810369.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC3 isoform 1
[Pongo abelii]
Length = 534
Score = 99.4 bits (246), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 110/498 (22%), Positives = 216/498 (43%), Gaps = 66/498 (13%)
Query: 2 LTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQ 61
+T+ K ++ HFG++V K+ L+R G + + T S +QVK AL VL+Q
Sbjct: 1 MTQAEIKLCSLLLQEHFGEIVEKIGVHLIRTGSQPLRVIADDTGTSLDQVKKALCVLVQH 60
Query: 62 NCVQAFTTEQPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLL 121
N V + + +Y +L +R+ +++ + +V+ LL
Sbjct: 61 NLV---------SYQVHKRGVVEYEAQCSRVLRILRYPRYIYTTKTLYSDTGELIVEELL 111
Query: 122 EHGRLTL----KQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPIS 177
+G+LT+ K++ DR + ++G +D + T V+LV H+V+RCP+ +P +
Sbjct: 112 LNGKLTMSAVVKKVADRLTETMEDGKTMDYAEVSNTFVRLVDTHFVQRCPS-----VPTT 166
Query: 178 EEEGPARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVT 237
E P + + I E + +P + S++ G++ ++S+
Sbjct: 167 ENSDPGPPPPAPTL-VINEKDMY-------LVP----KLSLIGK-----GKRRRSSDEDA 209
Query: 238 PGE-KRKHDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSA 296
GE K K D + + ++AN + F + R + + V +D ++ ++
Sbjct: 210 AGEPKAKRPKHTTDNKEPIPDDGIYWQANLDRFHQHFRDQAIVSAVANRMDQTSSEIVRT 269
Query: 297 MLQATSSAEKKVKTKNSVPLSLSSIYEEVIKS-EAGRNMT---------------LDHVR 340
ML+ + ++ T +S P + E+ +S G N++ L+ V
Sbjct: 270 MLRMS-----EITTSSSAPFTQPLSSNEIFRSLPVGYNISKQVLDQYLTLLADDPLEFVG 324
Query: 341 AS------LVQLDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDT 394
S + ++ K + +ESVV +R+G RIFRL+ + + +E ++ D
Sbjct: 325 KSGDSGGGMYVINLHKALASLATATLESVVQERFGSRCARIFRLVLQK-KHIEQKQVEDF 383
Query: 395 TFVEKKDAPKILYKLWKDGYLLMEKLVVTG--ARQSQFLLWKVNRQILWKHVLDEMFHAA 452
+ K+A +LYK+ + ++ ++++ T A F L+ VN + +L + +
Sbjct: 384 AMIPAKEAKDMLYKMLSENFMSLQEIPKTPDHAPSRTFYLYTVNILSAARMLLHRCYKSI 443
Query: 453 LNLSLRVSYELDREKELL 470
NL R +E K LL
Sbjct: 444 ANLIERRQFETKENKRLL 461
>gi|296228563|ref|XP_002759864.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC3 isoform 1
[Callithrix jacchus]
Length = 547
Score = 99.0 bits (245), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 110/498 (22%), Positives = 212/498 (42%), Gaps = 66/498 (13%)
Query: 2 LTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQ 61
+T+ K ++ HFG++V K+ L+R G + + T S +QVK AL VL+Q
Sbjct: 14 MTQAEIKLCSLLLQEHFGEIVEKIGVHLIRTGSQPLRVIAHDTGTSLDQVKKALCVLVQH 73
Query: 62 NCVQAFTTEQPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLL 121
N V + + +Y +L +R+ +++ + +V+ LL
Sbjct: 74 NLV---------SYQVHKRGVVEYEAQCSRVLRMLRYPRYIYTTKTLYSDTGELIVEELL 124
Query: 122 EHGRLTL----KQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPIS 177
+G+LT+ K++ DR + ++G +D + T V+L H+V+RCP+ +P +
Sbjct: 125 LNGKLTMSAVVKKVADRLTETMEDGKTMDYAEVSNTFVRLADTHFVQRCPS-----VPTT 179
Query: 178 EEEGPARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVT 237
E P + + I E + +P + S++ G++ ++S+
Sbjct: 180 ENSDPGPPPPAPTL-VINEKDMY-------LVP----KLSLIGK-----GKRRRSSDEDA 222
Query: 238 PGE-KRKHDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSA 296
GE K K D + + ++AN + F + R + + V +D ++ ++
Sbjct: 223 AGEPKAKRPKHTTDNKEPIPDDGIYWQANLDRFHQHFRDQAIVSAVANRMDQTSSEIVRT 282
Query: 297 MLQATSSAEKKVKTKNSVPLSLSSIYEEVIKS-EAGRNMT---LDHVRASLVQ------- 345
ML+ + ++ T +S P + E+ +S G N+ LD L
Sbjct: 283 MLRMS-----EITTSSSAPFTQPLSSNEIFRSLPVGYNIAKQVLDQYLTLLADDPLQFVG 337
Query: 346 -----------LDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDT 394
++ K + +ESVV +R+G RIFRL+ + + LE ++ D
Sbjct: 338 KSGDSGGGMYVINLHKALASLATATLESVVQERFGSRCARIFRLVLQK-KHLEQKQVEDF 396
Query: 395 TFVEKKDAPKILYKLWKDGYLLMEKLVVTG--ARQSQFLLWKVNRQILWKHVLDEMFHAA 452
+ K+A +LYK+ + ++ ++++ T A F L+ VN + +L + +
Sbjct: 397 AMIPAKEAKDMLYKMLSENFISLQEIPKTPDHAPSRTFYLYTVNILSAARMLLHRCYKSI 456
Query: 453 LNLSLRVSYELDREKELL 470
NL R +E K LL
Sbjct: 457 ANLIERRQFETKENKRLL 474
>gi|296228565|ref|XP_002759865.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC3 isoform 2
[Callithrix jacchus]
Length = 534
Score = 99.0 bits (245), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 110/498 (22%), Positives = 212/498 (42%), Gaps = 66/498 (13%)
Query: 2 LTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQ 61
+T+ K ++ HFG++V K+ L+R G + + T S +QVK AL VL+Q
Sbjct: 1 MTQAEIKLCSLLLQEHFGEIVEKIGVHLIRTGSQPLRVIAHDTGTSLDQVKKALCVLVQH 60
Query: 62 NCVQAFTTEQPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLL 121
N V + + +Y +L +R+ +++ + +V+ LL
Sbjct: 61 NLV---------SYQVHKRGVVEYEAQCSRVLRMLRYPRYIYTTKTLYSDTGELIVEELL 111
Query: 122 EHGRLTL----KQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPIS 177
+G+LT+ K++ DR + ++G +D + T V+L H+V+RCP+ +P +
Sbjct: 112 LNGKLTMSAVVKKVADRLTETMEDGKTMDYAEVSNTFVRLADTHFVQRCPS-----VPTT 166
Query: 178 EEEGPARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVT 237
E P + + I E + +P + S++ G++ ++S+
Sbjct: 167 ENSDPGPPPPAPTL-VINEKDMY-------LVP----KLSLIGK-----GKRRRSSDEDA 209
Query: 238 PGE-KRKHDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSA 296
GE K K D + + ++AN + F + R + + V +D ++ ++
Sbjct: 210 AGEPKAKRPKHTTDNKEPIPDDGIYWQANLDRFHQHFRDQAIVSAVANRMDQTSSEIVRT 269
Query: 297 MLQATSSAEKKVKTKNSVPLSLSSIYEEVIKS-EAGRNMT---LDHVRASLVQ------- 345
ML+ + ++ T +S P + E+ +S G N+ LD L
Sbjct: 270 MLRMS-----EITTSSSAPFTQPLSSNEIFRSLPVGYNIAKQVLDQYLTLLADDPLQFVG 324
Query: 346 -----------LDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDT 394
++ K + +ESVV +R+G RIFRL+ + + LE ++ D
Sbjct: 325 KSGDSGGGMYVINLHKALASLATATLESVVQERFGSRCARIFRLVLQK-KHLEQKQVEDF 383
Query: 395 TFVEKKDAPKILYKLWKDGYLLMEKLVVTG--ARQSQFLLWKVNRQILWKHVLDEMFHAA 452
+ K+A +LYK+ + ++ ++++ T A F L+ VN + +L + +
Sbjct: 384 AMIPAKEAKDMLYKMLSENFISLQEIPKTPDHAPSRTFYLYTVNILSAARMLLHRCYKSI 443
Query: 453 LNLSLRVSYELDREKELL 470
NL R +E K LL
Sbjct: 444 ANLIERRQFETKENKRLL 461
>gi|397469197|ref|XP_003806248.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC3 isoform 2
[Pan paniscus]
Length = 545
Score = 99.0 bits (245), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 108/498 (21%), Positives = 215/498 (43%), Gaps = 66/498 (13%)
Query: 2 LTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQ 61
+T+ K ++ HFG++V K+ L+R G + + T S +QVK AL VL+Q
Sbjct: 12 MTQAEIKLCSLLLQEHFGEIVEKIGVHLIRTGSQPLRVIAHDTGTSLDQVKKALCVLVQH 71
Query: 62 NCVQAFTTEQPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLL 121
N V + + +Y +L +R+ +++ + +V+ LL
Sbjct: 72 NLV---------SYQVHKRGVVEYEAQCSRVLRMLRYPRYIYTTKTLYSDTGELIVEELL 122
Query: 122 EHGRLTL----KQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPIS 177
+G+LT+ K++ DR + ++G +D + T V+L H+V+RCP+ +P +
Sbjct: 123 LNGKLTMSAVVKKVADRLTETMEDGKTMDYAEVSNTFVRLADTHFVQRCPS-----VPTT 177
Query: 178 EEEGPARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVT 237
E P + + I E + +P + +++ G++ ++S+
Sbjct: 178 ENSDPGPPPPAPTL-VINEKDMY-------LVP----KLTLIGK-----GKRRRSSDEDA 220
Query: 238 PGE-KRKHDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSA 296
GE K K D + + ++AN + F + R + + V +D ++ ++
Sbjct: 221 AGEPKAKRPKYTTDNKEPIPDDGIYWQANLDRFHQHFRDQAIVSAVANRMDQTSSEIVRT 280
Query: 297 MLQATSSAEKKVKTKNSVPLSLSSIYEEVIKS-EAGRNMT---------------LDHVR 340
ML+ + ++ T +S P + E+ +S G N++ L+ V
Sbjct: 281 MLRMS-----EITTSSSAPFTQPLSSNEIFRSLPVGYNISKQVLDQYLTLLADDPLEFVG 335
Query: 341 AS------LVQLDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDT 394
S + ++ K + +ESVV +R+G RIFRL+ + + +E ++ D
Sbjct: 336 KSGDSGGGMYVINLHKALASLATATLESVVQERFGSRCARIFRLVLQK-KHIEQKQVEDF 394
Query: 395 TFVEKKDAPKILYKLWKDGYLLMEKLVVTG--ARQSQFLLWKVNRQILWKHVLDEMFHAA 452
+ K+A +LYK+ + ++ ++++ T A F L+ VN + +L + +
Sbjct: 395 AMIPAKEAKDMLYKMLSENFMSLQEIPKTPDHAPSRTFYLYTVNILSAARMLLHRCYKSI 454
Query: 453 LNLSLRVSYELDREKELL 470
NL R +E K LL
Sbjct: 455 ANLIERRQFETKENKRLL 472
>gi|397469195|ref|XP_003806247.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC3 isoform 1
[Pan paniscus]
Length = 534
Score = 98.6 bits (244), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 108/498 (21%), Positives = 215/498 (43%), Gaps = 66/498 (13%)
Query: 2 LTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQ 61
+T+ K ++ HFG++V K+ L+R G + + T S +QVK AL VL+Q
Sbjct: 1 MTQAEIKLCSLLLQEHFGEIVEKIGVHLIRTGSQPLRVIAHDTGTSLDQVKKALCVLVQH 60
Query: 62 NCVQAFTTEQPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLL 121
N V + + +Y +L +R+ +++ + +V+ LL
Sbjct: 61 NLV---------SYQVHKRGVVEYEAQCSRVLRMLRYPRYIYTTKTLYSDTGELIVEELL 111
Query: 122 EHGRLTL----KQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPIS 177
+G+LT+ K++ DR + ++G +D + T V+L H+V+RCP+ +P +
Sbjct: 112 LNGKLTMSAVVKKVADRLTETMEDGKTMDYAEVSNTFVRLADTHFVQRCPS-----VPTT 166
Query: 178 EEEGPARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVT 237
E P + + I E + +P + +++ G++ ++S+
Sbjct: 167 ENSDPGPPPPAPTL-VINEKDMY-------LVP----KLTLIGK-----GKRRRSSDEDA 209
Query: 238 PGE-KRKHDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSA 296
GE K K D + + ++AN + F + R + + V +D ++ ++
Sbjct: 210 AGEPKAKRPKYTTDNKEPIPDDGIYWQANLDRFHQHFRDQAIVSAVANRMDQTSSEIVRT 269
Query: 297 MLQATSSAEKKVKTKNSVPLSLSSIYEEVIKS-EAGRNMT---------------LDHVR 340
ML+ + ++ T +S P + E+ +S G N++ L+ V
Sbjct: 270 MLRMS-----EITTSSSAPFTQPLSSNEIFRSLPVGYNISKQVLDQYLTLLADDPLEFVG 324
Query: 341 AS------LVQLDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDT 394
S + ++ K + +ESVV +R+G RIFRL+ + + +E ++ D
Sbjct: 325 KSGDSGGGMYVINLHKALASLATATLESVVQERFGSRCARIFRLVLQK-KHIEQKQVEDF 383
Query: 395 TFVEKKDAPKILYKLWKDGYLLMEKLVVTG--ARQSQFLLWKVNRQILWKHVLDEMFHAA 452
+ K+A +LYK+ + ++ ++++ T A F L+ VN + +L + +
Sbjct: 384 AMIPAKEAKDMLYKMLSENFMSLQEIPKTPDHAPSRTFYLYTVNILSAARMLLHRCYKSI 443
Query: 453 LNLSLRVSYELDREKELL 470
NL R +E K LL
Sbjct: 444 ANLIERRQFETKENKRLL 461
>gi|355712759|gb|AES04456.1| polymerase III polypeptide C [Mustela putorius furo]
Length = 533
Score = 98.2 bits (243), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 107/498 (21%), Positives = 212/498 (42%), Gaps = 66/498 (13%)
Query: 2 LTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQ 61
+T+ K ++ HFG++V K+ L+R G + + T S +QVK AL VLIQ
Sbjct: 1 MTQAEIKLCSLLLQEHFGEIVEKIGVHLIRTGSQPLRVIAHDTGTSLDQVKKALCVLIQH 60
Query: 62 NCVQAFTTEQPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLL 121
N V + + +Y +L +R+ +++ + +V+ LL
Sbjct: 61 NLVI---------YQVHKRGVVEYEAQCSRVLRMLRYPRYIYTAKTLYSDTGELIVEELL 111
Query: 122 EHGRLTL----KQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPIS 177
+G++T+ K++ DR + ++G +D + T ++L H+V+RCP +P +
Sbjct: 112 LNGKMTMSAVVKKVADRLTETMEDGKTMDYAEVSNTFMRLADTHFVQRCP-----WVPAT 166
Query: 178 EEEGPARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVT 237
E P + P + + +P + S++ G++ ++S+
Sbjct: 167 ENSDPGPLPPA--------PILVISEKDMYLVP----KLSLIGK-----GKRRRSSDEDA 209
Query: 238 PGE-KRKHDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSA 296
GE K K D + + ++AN + F + R + + V +D ++ ++
Sbjct: 210 TGEPKAKRSKHSTDNKEPIPDDGIYWQANLDRFHQHFRDQAIVSAVANRMDQTSSEIVRT 269
Query: 297 MLQATSSAEKKVKTKNSVPLSLSSIYEEVIKS-EAGRNMT---------------LDHVR 340
ML+ + ++ T ++ P + E+ +S G N++ L+ V
Sbjct: 270 MLRMS-----EITTPSAAPFTQPLSSNEIFRSLPVGYNISKQVLDQYLTLLADDPLEFVG 324
Query: 341 AS------LVQLDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDT 394
S + ++ K + +ESVV +R+G RIFRL+ + + LE ++ D
Sbjct: 325 KSGDSGGGMYVINLHKALGSLATATLESVVQERFGSRCARIFRLVLQK-KHLEQKQVEDF 383
Query: 395 TFVEKKDAPKILYKLWKDGYLLMEKLVVTG--ARQSQFLLWKVNRQILWKHVLDEMFHAA 452
+ K+A +LYK+ ++ ++++ T A F L+ VN + +L + +
Sbjct: 384 AMIPAKEAKDMLYKMLSGNFISLQEIPKTPDHAPSRTFYLYTVNILSAARMLLHRCYKSI 443
Query: 453 LNLSLRVSYELDREKELL 470
NL R +E K LL
Sbjct: 444 ANLIERRQFETKENKRLL 461
>gi|338725136|ref|XP_001499327.3| PREDICTED: DNA-directed RNA polymerase III subunit RPC3-like [Equus
caballus]
Length = 534
Score = 98.2 bits (243), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 106/487 (21%), Positives = 208/487 (42%), Gaps = 66/487 (13%)
Query: 13 VITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQP 72
++ HFG++V K+ L+R G + + T S +QVK AL VLIQ N V
Sbjct: 12 LLQEHFGEIVEKIGVHLIRTGSQPLRVIAHDTGTSLDQVKKALCVLIQHNLVI------- 64
Query: 73 DGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTL---- 128
+ + +Y +L +R+ +++ + +V+ LL +G++T+
Sbjct: 65 --YQVHKRGVVEYEAQCSRVLRMLRYPRYIYTAKTLYSDTGELIVEELLLNGKMTMSAVV 122
Query: 129 KQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEGPARKKGS 188
K++ DR + ++G +D + T V+L H+V+RCP +P +E P +
Sbjct: 123 KKVADRLTETMEDGKTMDYAEVSNTFVRLADTHFVQRCP-----FVPATENSDPGPPPPA 177
Query: 189 KSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGE-KRKHDVL 247
+ V+ + S++ G++ ++S+ GE K K
Sbjct: 178 PTL------------VINEKDMYLVPKLSLIGK-----GKRRRSSDEDATGEPKAKRPKH 220
Query: 248 ELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQATSSAEKK 307
D + + ++AN + F + R +G + V +D ++ ++ ML+ + +
Sbjct: 221 TADNKEPIPDDGIYWQANLDRFHQHFRDQGIVSAVANRMDQTSSEIVRTMLRMS-----E 275
Query: 308 VKTKNSVPLSLSSIYEEVIKS-EAGRNMT---------------LDHVRAS------LVQ 345
+ T ++ P + E+ +S G N++ L+ V S +
Sbjct: 276 ITTPSNAPFTQPLSSNEIFRSLPVGYNISKQVLDQYLTLLADDPLEFVGKSGDSGGGMYV 335
Query: 346 LDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKI 405
++ K + +ESVV +R+G RIFRL+ + + LE ++ D + K+A +
Sbjct: 336 INLHKALGSLATATLESVVQERFGSRCARIFRLVLQK-KHLEQKQVEDFAMIPAKEAKDM 394
Query: 406 LYKLWKDGYLLMEKLVVTG--ARQSQFLLWKVNRQILWKHVLDEMFHAALNLSLRVSYEL 463
LYK+ + ++ ++++ T A F L+ VN + +L + + NL R +E
Sbjct: 395 LYKMLSENFISLQEIPKTPDHAPSRTFYLYTVNILSAARMLLHRCYKSIANLIERRQFET 454
Query: 464 DREKELL 470
K LL
Sbjct: 455 KENKRLL 461
>gi|426331118|ref|XP_004026542.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC3 isoform 2
[Gorilla gorilla gorilla]
Length = 547
Score = 98.2 bits (243), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 108/498 (21%), Positives = 215/498 (43%), Gaps = 66/498 (13%)
Query: 2 LTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQ 61
+T+ K ++ HFG++V K+ L+R G + + + T S +QVK AL VL+Q
Sbjct: 14 MTQAEIKLCSLLLQEHFGEIVEKIGVHLIRTGSQSLRVIAHDTGTSLDQVKKALCVLVQH 73
Query: 62 NCVQAFTTEQPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLL 121
N V + + +Y +L +R+ +++ + +V+ LL
Sbjct: 74 NLV---------SYQVHKRGVVEYEAQCSRVLRMLRYPRYIYTTKTLYSDTGELIVEELL 124
Query: 122 EHGRLTL----KQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPIS 177
+G+LT+ K++ DR + ++G +D + T V+L H+V+RCP+ +P +
Sbjct: 125 LNGKLTMSAVVKKVADRLTETMEDGKTMDYAEVSNTFVRLADTHFVQRCPS-----VPTT 179
Query: 178 EEEGPARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVT 237
E P + + I E + +P + S++ G++ ++S+
Sbjct: 180 ENSDPGPPPPAPTL-VINEKDMY-------LVP----KLSLIGK-----GKRRRSSDEDA 222
Query: 238 PGE-KRKHDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSA 296
GE K K D + + ++AN + F + R + + V +D ++ ++
Sbjct: 223 AGEPKAKRPKYTTDNKEPIPDDGIYWQANLDRFHQHFRDQAIVSAVANRMDQTSSEIVRT 282
Query: 297 MLQATSSAEKKVKTKNSVPLSLSSIYEEVIKS-EAGRNMT---------------LDHVR 340
ML+ + ++ T +S P + E+ +S G N++ L+ V
Sbjct: 283 MLRMS-----EITTSSSAPFTQPLSSNEIFRSLPVGYNISKQVLDQYLTLLADDPLEFVG 337
Query: 341 AS------LVQLDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDT 394
S + ++ K + +ESVV +R+G RIFRL+ + + +E ++ D
Sbjct: 338 KSGDSGGGMYVINLHKALASLATATLESVVQERFGSRCARIFRLVLQK-KHIEQKQVEDF 396
Query: 395 TFVEKKDAPKILYKLWKDGYLLMEKLVVTG--ARQSQFLLWKVNRQILWKHVLDEMFHAA 452
+ K+A +LYK+ + ++ ++++ T A F L+ V + +L + +
Sbjct: 397 AMIPAKEAKDMLYKMLSENFMSLQEIPKTPDHAPSRTFYLYTVTILSAARMLLHRCYKSI 456
Query: 453 LNLSLRVSYELDREKELL 470
NL R +E K LL
Sbjct: 457 ANLIERRQFETKENKRLL 474
>gi|395535853|ref|XP_003769935.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC3
[Sarcophilus harrisii]
Length = 535
Score = 98.2 bits (243), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 111/500 (22%), Positives = 213/500 (42%), Gaps = 69/500 (13%)
Query: 2 LTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQ 61
+T+ K ++ HFG++V K+ L+R G + + T S +QVK AL VLIQ
Sbjct: 1 MTQAEIKLCSLLLQEHFGEIVDKIGTHLIRTGSQPLRAIVHGTGTSLDQVKKALCVLIQH 60
Query: 62 NCVQAFTTEQPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLL 121
N V + + +Y IL +R+ +++ + +V+ LL
Sbjct: 61 NLVT---------YQIHKRGIVEYEAHCSRILRILRYPRYIYTAKTLYSDTGELIVEELL 111
Query: 122 EHGRLTL----KQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPIS 177
+G++T+ K++ DR + ++G +D + T +L H+V+RCP L+P
Sbjct: 112 LNGKMTMSAVVKKVADRLTETMEDGKTMDYAEVSSTFCRLADTHFVQRCP-----LVPDP 166
Query: 178 EEEGPARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVT 237
E A+ I E + +P + +++ G++ ++S++
Sbjct: 167 PESAEAQPPPPAPTLSINEKDMY-------LVP----KLNLIGK-----GKRRRSSDDDA 210
Query: 238 PGE---KRKHDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVL 294
GE KR E E D + ++AN + F + R + ++ V +D ++ ++
Sbjct: 211 AGEPRPKRPKQTAESKEPMPDD--GIYWQANLDRFHQHFRDQSIVNAVANRMDQTSSEIV 268
Query: 295 SAMLQATSSAEKKVKTKNSVPLSLSSIYEEVIKS-EAGRNMT---------------LDH 338
ML+ + ++ T + P + E+ +S G N++ L+
Sbjct: 269 RTMLRMS-----EITTSSGAPFTQPLSSNEIFRSLPVGYNISKQVLDQYLTLLADDPLEF 323
Query: 339 VRAS------LVQLDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKIS 392
V S + ++ K + +ES+V +R+G RIFRL+ + + LE ++
Sbjct: 324 VGKSGDSGGGMYVINLHKALASLAMATLESIVQERFGSRCARIFRLVLRK-KHLEQKQVE 382
Query: 393 DTTFVEKKDAPKILYKLWKDGYLLMEKLVVTG--ARQSQFLLWKVNRQILWKHVLDEMFH 450
D + K+A +LYKL + + ++++ T A F L+ VN + +L +
Sbjct: 383 DFAMIPAKEAKDMLYKLLSENLISLQEIPKTPDHAPSRTFYLYTVNSLSAARMLLRRCYK 442
Query: 451 AALNLSLRVSYELDREKELL 470
+ NL R +E K LL
Sbjct: 443 SIANLIERRQFETRENKRLL 462
>gi|426331116|ref|XP_004026541.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC3 isoform 1
[Gorilla gorilla gorilla]
Length = 534
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 108/498 (21%), Positives = 215/498 (43%), Gaps = 66/498 (13%)
Query: 2 LTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQ 61
+T+ K ++ HFG++V K+ L+R G + + + T S +QVK AL VL+Q
Sbjct: 1 MTQAEIKLCSLLLQEHFGEIVEKIGVHLIRTGSQSLRVIAHDTGTSLDQVKKALCVLVQH 60
Query: 62 NCVQAFTTEQPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLL 121
N V + + +Y +L +R+ +++ + +V+ LL
Sbjct: 61 NLV---------SYQVHKRGVVEYEAQCSRVLRMLRYPRYIYTTKTLYSDTGELIVEELL 111
Query: 122 EHGRLTL----KQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPIS 177
+G+LT+ K++ DR + ++G +D + T V+L H+V+RCP+ +P +
Sbjct: 112 LNGKLTMSAVVKKVADRLTETMEDGKTMDYAEVSNTFVRLADTHFVQRCPS-----VPTT 166
Query: 178 EEEGPARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVT 237
E P + + I E + +P + S++ G++ ++S+
Sbjct: 167 ENSDPGPPPPAPTL-VINEKDMY-------LVP----KLSLIGK-----GKRRRSSDEDA 209
Query: 238 PGE-KRKHDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSA 296
GE K K D + + ++AN + F + R + + V +D ++ ++
Sbjct: 210 AGEPKAKRPKYTTDNKEPIPDDGIYWQANLDRFHQHFRDQAIVSAVANRMDQTSSEIVRT 269
Query: 297 MLQATSSAEKKVKTKNSVPLSLSSIYEEVIKS-EAGRNMT---------------LDHVR 340
ML+ + ++ T +S P + E+ +S G N++ L+ V
Sbjct: 270 MLRMS-----EITTSSSAPFTQPLSSNEIFRSLPVGYNISKQVLDQYLTLLADDPLEFVG 324
Query: 341 AS------LVQLDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDT 394
S + ++ K + +ESVV +R+G RIFRL+ + + +E ++ D
Sbjct: 325 KSGDSGGGMYVINLHKALASLATATLESVVQERFGSRCARIFRLVLQK-KHIEQKQVEDF 383
Query: 395 TFVEKKDAPKILYKLWKDGYLLMEKLVVTG--ARQSQFLLWKVNRQILWKHVLDEMFHAA 452
+ K+A +LYK+ + ++ ++++ T A F L+ V + +L + +
Sbjct: 384 AMIPAKEAKDMLYKMLSENFMSLQEIPKTPDHAPSRTFYLYTVTILSAARMLLHRCYKSI 443
Query: 453 LNLSLRVSYELDREKELL 470
NL R +E K LL
Sbjct: 444 ANLIERRQFETKENKRLL 461
>gi|392567127|gb|EIW60302.1| hypothetical protein TRAVEDRAFT_164994 [Trametes versicolor
FP-101664 SS1]
Length = 543
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 126/510 (24%), Positives = 218/510 (42%), Gaps = 80/510 (15%)
Query: 13 VITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQP 72
++ + FG L A V +L G L + R++++ V+ A+L+L+Q N + +E+
Sbjct: 13 IVRSVFGPLTATVTSIILTHGRLGLPQLLRFSKMKPRTVRAAILILVQHNLLWHSQSEE- 71
Query: 73 DGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRL----TL 128
+ + D L R+R+ +++ + Q + + E++Q +L+HG+L +
Sbjct: 72 --------EGEVFEINIDECLMRLRYGRYVWLAEQLYGKSGGEIIQLVLDHGKLRPPDII 123
Query: 129 KQM--FDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEGPARKK 186
Q+ +D K L +TL KLV Y++ P++ LL S E R +
Sbjct: 124 AQLSIYDPVKGPA---------LLTQTLHKLVDEAYLK--PST--LLSHFSPREKLIRYE 170
Query: 187 GSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGEKRKHDV 246
G + K G P ++V EA +A R + VG K K + KRK
Sbjct: 171 GEEKRKIPGFPTA--REVREARETAQA-RLTREEEEAEQVGMKRKAKDYSHKASKRK--A 225
Query: 247 LELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQATSSAEK 306
+E D V + V +R N E F +R+K ++ A VL A L+AT ++
Sbjct: 226 IEED---VEVDDGVYFRVNCERFNVHIRNKLIETAASERFNESAGTVLRATLKATEPRQR 282
Query: 307 KVKTKNSVPLSLSSI------------------------------YEEVIKS-----EAG 331
K+ S P S +++ Y ++ S AG
Sbjct: 283 KLTDVRSDPTSFANVAMHLPDDVDLASGLVLQSSKTPPTMTLVKEYLGILASADNPTPAG 342
Query: 332 RNMTLDHVRASLVQLDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKI 391
R + + S VQ++FE I Q +ESV +R+G + RI RLL+ +G +++ +I
Sbjct: 343 RAASFVSLGGSKVQVEFEIIARRLQRRVLESVARERHGDEGVRIIRLLADTG-MMDEKQI 401
Query: 392 SDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTGARQS--QFLLWKVNRQILWKHVLDEMF 449
S + KDA +L + + + ++++ + R F LW V+ Q L ++
Sbjct: 402 SKIGMMAAKDARPLLSAMSAESLVSLQEVPKSADRNPTRMFYLWYVDLQKASTVQLRSLY 461
Query: 450 HAALNLSLRVSYELDREKELLNLPA--DKR 477
N++ R E+E NL A DKR
Sbjct: 462 KTLYNIATRRQA----EQEEPNLKAVLDKR 487
>gi|62898387|dbj|BAD97133.1| polymerase (RNA) III (DNA directed) polypeptide C (62kD) variant
[Homo sapiens]
Length = 534
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 109/498 (21%), Positives = 214/498 (42%), Gaps = 66/498 (13%)
Query: 2 LTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQ 61
+T+ K ++ HFG++V K+ L+R G + + T S +QVK AL VL Q
Sbjct: 1 MTQAEIKLCSLLLQEHFGEIVEKIGVRLIRTGSQPLRVIAHDTGTSLDQVKKALCVLAQH 60
Query: 62 NCVQAFTTEQPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLL 121
N V + + +Y +L +R+ +++ + +V+ LL
Sbjct: 61 NLV---------SYQVHKRGVVEYEAQCSRVLRMLRYPRYIYTTKTLYSDTGELIVEELL 111
Query: 122 EHGRLTL----KQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPIS 177
+G+LT+ K++ DR + ++G +D + T V+L H+V+RCP+ +P +
Sbjct: 112 LNGKLTMSAVVKKVADRLTETMEDGKTMDYAEVSNTFVRLADTHFVQRCPS-----VPTT 166
Query: 178 EEEGPARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVT 237
E P + + I E + +P + S++ G++ ++S+
Sbjct: 167 ENSDPGPPPPAPTL-VINEKDMY-------LVP----KLSLIGK-----GKRRRSSDEDA 209
Query: 238 PGE-KRKHDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSA 296
GE K K D + + ++AN + F + R + + V +D ++ ++
Sbjct: 210 AGEPKAKRPKYTTDNKEPIPDDGIYWQANLDRFHQHFRDQAIVSAVANRMDQTSSEIVRT 269
Query: 297 MLQATSSAEKKVKTKNSVPLSLSSIYEEVIKS-EAGRNMT---------------LDHVR 340
ML+ + ++ T +S P + E+ +S G N++ L+ V
Sbjct: 270 MLRMS-----EITTSSSAPFTQPLSSNEIFRSLPVGYNISKQVLDQYLTLLADDPLEFVG 324
Query: 341 AS------LVQLDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDT 394
S + ++ K + +ESVV +R+G RIFRL+ + + +E ++ D
Sbjct: 325 KSGDSGGGMYVINLHKALASLATATLESVVQERFGSRCARIFRLVLEK-KHIEQKQVEDF 383
Query: 395 TFVEKKDAPKILYKLWKDGYLLMEKLVVTG--ARQSQFLLWKVNRQILWKHVLDEMFHAA 452
+ K+A +LYK+ + ++ ++++ T A F L+ VN + +L + +
Sbjct: 384 AMIPAKEAKDMLYKMLSENFMSLQEIPKTPDHAPSRTFYLYTVNILSAARMLLHRCYKSI 443
Query: 453 LNLSLRVSYELDREKELL 470
NL R +E K LL
Sbjct: 444 ANLIERRQFETKENKRLL 461
>gi|297279785|ref|XP_002808279.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase III
subunit RPC3-like [Macaca mulatta]
Length = 545
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 110/498 (22%), Positives = 214/498 (42%), Gaps = 66/498 (13%)
Query: 2 LTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQ 61
+T+ K ++ HFG++V K+ L+R G + + T S +QVK AL VLIQ
Sbjct: 12 MTQAEIKLCSLLLQEHFGEIVEKIGVHLIRTGSQPLRVIAHDTGTSLDQVKKALCVLIQH 71
Query: 62 NCVQAFTTEQPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLL 121
N V + + +Y +L +R+ +++ + +V+ LL
Sbjct: 72 NLV---------SYQVHKRGVVEYEAQCSRVLRMLRYPRYIYTTKTLYSDTGELIVEELL 122
Query: 122 EHGRLTL----KQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPIS 177
+G+LT+ K++ DR + ++G +D + T V+L H+V+RCP+ +P +
Sbjct: 123 LNGKLTMSAVVKKVADRLTETMEDGKTMDYAEVSNTFVRLADTHFVQRCPS-----VPTT 177
Query: 178 EEEGPARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVT 237
E P + + I E + +P + S++ G++ ++S+
Sbjct: 178 ENSDPGPPPPAPTLV-INEKDMY-------LVP----KLSLIGK-----GKRRRSSDEDA 220
Query: 238 PGE-KRKHDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSA 296
GE K K D + + ++AN + F + R + + V +D ++ ++
Sbjct: 221 AGEPKAKRPKHTTDNKEPIPDDGIYWQANLDRFHQHFRDQAIVSAVANRMDQTSSEIVRT 280
Query: 297 MLQATSSAEKKVKTKNSVPLSLSSIYEEVIKS-EAGRNMT---------------LDHVR 340
ML+ + ++ T +S P + E+ +S G ++ L+ V
Sbjct: 281 MLRMS-----EITTSSSAPFTQPLSSNEIFRSLPVGYXISKQVLDQYLTLLADDPLEFVG 335
Query: 341 AS------LVQLDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDT 394
S + ++ K + +ESVV +R+G RIFRL+ + + LE ++ D
Sbjct: 336 KSGDSGGGMYVINLHKALASLATATLESVVQERFGSRCARIFRLVLQK-KHLEQKQVEDF 394
Query: 395 TFVEKKDAPKILYKLWKDGYLLMEKLVVTG--ARQSQFLLWKVNRQILWKHVLDEMFHAA 452
+ K+A +LYK+ + ++ ++++ T A F L+ VN + +L + +
Sbjct: 395 AMIPAKEAKDMLYKMLSENFMSLQEIPKTPDHAPSRTFYLYTVNILSAARMLLHRCYKSI 454
Query: 453 LNLSLRVSYELDREKELL 470
NL R +E K LL
Sbjct: 455 ANLIERRQFETKENKRLL 472
>gi|335775071|gb|AEH58449.1| DNA-directed RNA polymerase III subunit RPC-like protein [Equus
caballus]
Length = 508
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 106/487 (21%), Positives = 208/487 (42%), Gaps = 66/487 (13%)
Query: 13 VITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQP 72
++ HFG++V K+ L+R G + + T S +QVK AL VLIQ N V
Sbjct: 12 LLQEHFGEIVEKIGVHLIRTGSQPLRVIAHDTGTSLDQVKKALCVLIQHNLVI------- 64
Query: 73 DGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTL---- 128
+ + +Y +L +R+ +++ + +V+ LL +G++T+
Sbjct: 65 --YQVHKRCVVEYEAQCSRVLRMLRYPRYIYTAKTLYSDTGELIVEELLLNGKMTMSAVV 122
Query: 129 KQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEGPARKKGS 188
K++ DR + ++G +D + T V+L H+V+RCP PA +
Sbjct: 123 KKVADRLTETMEDGKTMDYAEVSNTFVRLADTHFVQRCPFV------------PANENSD 170
Query: 189 KSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGE-KRKHDVL 247
I ++ + +P + S++ G++ ++S+ GE K K
Sbjct: 171 PGPPPPAPTLVINEKDM-YLVP----KLSLIGK-----GKRRRSSDEDATGEPKAKRPKH 220
Query: 248 ELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQATSSAEKK 307
D + + ++AN + F + R +G + V +D ++ ++ ML+ + +
Sbjct: 221 TADNKEPIPDDGIYWQANLDRFHQHFRDQGIVSAVANRMDQTSSEIVRTMLRMS-----E 275
Query: 308 VKTKNSVPLSLSSIYEEVIKS-EAGRNMT---------------LDHVRAS------LVQ 345
+ T ++ P + E+ +S G N++ L+ V S +
Sbjct: 276 ITTPSNAPFTQPLSSNEIFRSLPVGYNISKQVLDQYLTLLADDPLEFVGKSGDSGGGMYV 335
Query: 346 LDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKI 405
++ K + +ESVV +R+G RIFRL+ + + LE ++ D + K+A +
Sbjct: 336 INLHKALGSLATATLESVVQERFGSRCARIFRLVLQK-KHLEQKQVEDFAMIPAKEAKDM 394
Query: 406 LYKLWKDGYLLMEKLVVTG--ARQSQFLLWKVNRQILWKHVLDEMFHAALNLSLRVSYEL 463
LYK+ + ++ ++++ T A F L+ VN + +L + + NL R +E
Sbjct: 395 LYKMLSENFISLQEIPKTPDHAPSRTFYLYTVNILSAARMLLHRCYKSIANLIERRQFET 454
Query: 464 DREKELL 470
K LL
Sbjct: 455 KENKRLL 461
>gi|444728584|gb|ELW69034.1| DNA-directed RNA polymerase III subunit RPC3 [Tupaia chinensis]
Length = 1120
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 109/483 (22%), Positives = 204/483 (42%), Gaps = 66/483 (13%)
Query: 17 HFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQPDGFA 76
HFG++V K+ L+R G + + T S +QVK AL VLIQ N V +
Sbjct: 602 HFGEIVEKIGVHLIRTGSQPLRVIAHDTGTSLDQVKKALCVLIQHNLVI---------YQ 652
Query: 77 DGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTL----KQMF 132
+Y +L +R+ +++ + +V+ LL +G++T+ K++
Sbjct: 653 VHKCGVVEYEAQCGRMLRMLRYPRYIYTTKTLYSDTGELIVEELLLNGKMTMSAVVKKVT 712
Query: 133 DRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEGPARKKGSKSAK 192
DR + ++ +D + T V+L H+V+RCP L+P +E+
Sbjct: 713 DRLTETMEDSKTMDYAEVSNTFVRLADTHFVQRCP-----LVPATEK------------S 755
Query: 193 KIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGE-KRKHDVLELDE 251
+ G P V+ E + V T G++ ++S GE K K D
Sbjct: 756 ESGPPPPAPTLVI-----TEKDMYLVPTLSLIGKGKRRRSSEEDAAGEPKAKRPKHSTDN 810
Query: 252 CGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQATSSAEKKVKTK 311
+ + ++AN + F + R + + V +D ++ ++ ML+ + ++ T
Sbjct: 811 KEPTPDDGIYWQANLDRFRQHFRDQAIMSAVANRMDQTSSEIVRTMLRMS-----EITTP 865
Query: 312 NSVPLSLSSIYEEVIKS-EAGRNMT---------------LDHVRAS------LVQLDFE 349
+S P +L E+ +S G N++ L+ V S + +
Sbjct: 866 SSAPFTLPLFSNEIFRSLPVGYNISKQVLDQYLTLLADDPLEFVGKSGDSGGGMYVISLH 925
Query: 350 KIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKL 409
K + +ESVV +R+G RIF L+ + + LE ++ D + K+A +LYK+
Sbjct: 926 KALASLATATLESVVQERFGSRCARIFCLVLQK-KHLEQKQVEDFAMIPAKEAKDMLYKM 984
Query: 410 WKDGYLLMEKLVVTG--ARQSQFLLWKVNRQILWKHVLDEMFHAALNLSLRVSYELDREK 467
+ ++ ++++ T A F L+ VN + + +L + + NL R +E K
Sbjct: 985 LSENFMSLQEIPKTPDHAPSRTFYLYIVNVLSVARMLLHRCYKSIANLIERRQFEARENK 1044
Query: 468 ELL 470
LL
Sbjct: 1045 RLL 1047
>gi|355389037|gb|AER62461.1| hypothetical protein [Heteranthelium piliferum]
Length = 215
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 66/222 (29%), Positives = 110/222 (49%), Gaps = 22/222 (9%)
Query: 165 RCPASEPLLMPISEEEG-PARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVE 223
RCP +EP P +E+ AR++ K+A+++ ++EQ+VV A + RFS +
Sbjct: 1 RCPKAEPYFNPQEDEQSTSARRRVPKTAEEVL---SLEQKVVNTATLSDPERFSEIPYSM 57
Query: 224 SDVGEKEKNSNNVTPGEKRKHDVLELDE--CGVADEQSVVYRANFEGFIRRLRHKGCIDH 281
D + N G KRKH E+DE E V++R NFE FI L+ K C +
Sbjct: 58 EDASKTNDCPQNAVAGAKRKHGAFEVDEELNSTIAENEVLWRVNFEKFIFCLKKKFCAER 117
Query: 282 VRAHLDDGAANVLSAMLQATSSAEKKVKTKNSVPLSLSSIYEEVIKSEAGRNMTLDHVRA 341
+ L G + + +A + K NSV S++ + E++ + E G M++ ++
Sbjct: 118 KKPKLKVGTHPIWESFFEANLTD----KDTNSVTSSINGVLEKLGQKEGGALMSIGQIKP 173
Query: 342 SLVQL------------DFEKIIEIAQNEEVESVVSKRYGRD 371
L+ L D K++E +NEE+ES+V K+YG++
Sbjct: 174 VLLDLQCTTSDGEEFTFDLRKMVEACRNEEIESLVKKKYGQE 215
>gi|410171281|ref|XP_003960211.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC3-like
isoform 3 [Homo sapiens]
Length = 484
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 103/484 (21%), Positives = 206/484 (42%), Gaps = 66/484 (13%)
Query: 13 VITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQP 72
++ HFG++V K+ L+R G + + T S +QVK AL VL+Q N V
Sbjct: 12 LLQEHFGEIVEKIGVHLIRTGSQPLRVIAHDTGTSLDQVKKALCVLVQHNLV-------- 63
Query: 73 DGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTL---- 128
+ + +Y +L +R+ +++ + +V+ LL +G+LT+
Sbjct: 64 -SYQVHKRGVVEYEAQCSRVLRMLRYPRYIYTTKTLYSDTGELIVEELLLNGKLTMSAVV 122
Query: 129 KQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEGPARKKGS 188
K++ DR + ++G +D + T V+L H+V+RCP+ +P +E P +
Sbjct: 123 KKVADRLTETMEDGKTMDYAEVSNTFVRLADTHFVQRCPS-----VPTTENSDPGPPPPA 177
Query: 189 KSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGE-KRKHDVL 247
+ V+ + S++ G++ ++S+ GE K K
Sbjct: 178 PTL------------VINEKDMYLVPKLSLIGK-----GKRRRSSDEDAAGEPKAKRPKY 220
Query: 248 ELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQATSSAEKK 307
D + + ++AN + F + R + + V +D ++ ++ ML+ + +
Sbjct: 221 TTDNKEPIPDDGIYWQANLDRFHQHFRDQAIVSAVANRMDQTSSEIVRTMLRMS-----E 275
Query: 308 VKTKNSVPLSLSSIYEEVIKS-EAGRNMT---------------LDHVRAS------LVQ 345
+ T +S P + E+ +S G N++ L+ V S +
Sbjct: 276 ITTSSSAPFTQPLSSNEIFRSLPVGYNISKQVLDQYLTLLADDPLEFVGKSGDSGGGMYV 335
Query: 346 LDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKI 405
++ K + +ESVV +R+G RIFRL+ + + +E ++ D + K+A +
Sbjct: 336 INLHKALASLATATLESVVQERFGSRCARIFRLVLQK-KHIEQKQVEDFAMIPAKEAKDM 394
Query: 406 LYKLWKDGYLLMEKLVVTG--ARQSQFLLWKVNRQILWKHVLDEMFHAALNLSLRVSYEL 463
LYK+ + ++ ++++ T A F L+ VN + +L + + NL R +E
Sbjct: 395 LYKMLSENFMSLQEIPKTPDHAPSRTFYLYTVNILSAARMLLHRCYKSIANLIERRQFET 454
Query: 464 DREK 467
K
Sbjct: 455 KENK 458
>gi|410905693|ref|XP_003966326.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC3-like
[Takifugu rubripes]
Length = 536
Score = 96.7 bits (239), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 111/488 (22%), Positives = 196/488 (40%), Gaps = 65/488 (13%)
Query: 13 VITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQP 72
++ HFG++V K+ LLR G + + T + + VK L VL+Q N V F
Sbjct: 12 LLREHFGEVVEKLGTHLLRSGSQNLRTILHETGMPRDLVKKVLCVLVQ-NGVCVFNHR-- 68
Query: 73 DGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTL---- 128
GP T Y + IL +R+ +++ + +++ LL+ G +T+
Sbjct: 69 -----GPGRPTNYQANSNKILRILRYPRYIYTAKTLYGDTGELIIEELLQRGEMTMSRTV 123
Query: 129 KQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEGPARKKGS 188
K + DR + ++G +D + KLV H+++RCP P+ + +
Sbjct: 124 KTVADRLTQNMEDGQCMDYSEVSSAFCKLVETHFLQRCP---PVAGAGKADSAAPATPAT 180
Query: 189 KSAKKIGEPETIEQ--QVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGEKRKHDV 246
++ PE+ +V + + + R +V+ + +K K
Sbjct: 181 QAGASAPTPESFPDCYRVPQVTIRGQGKRRLSSEDVDQTIAKKAK--------------- 225
Query: 247 LELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQ----ATS 302
+D DE + ++ NFE F R + I V LD ++ ++ ML+ TS
Sbjct: 226 --MDPETHGDE-GIYWQVNFERFHLHFRDQAIISAVANKLDQTSSEIVRTMLRMSEVTTS 282
Query: 303 SAEKKVKTKNSVPLSLSSIYEEVIKSEAGRNMTLDHVRASLVQ----------------- 345
A K PLS + I+ + + LD LV
Sbjct: 283 PAASCTK-----PLSANEIFRSLPSTYNIARPILDQYLTLLVDDPMEFVGRAGESGGGMF 337
Query: 346 -LDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPK 404
++ K++ +ES+V +R+G + RIFRLL + R LE ++ D V K+A
Sbjct: 338 VVNLHKVLANLARATLESIVQERFGSRSARIFRLLLRK-RHLEQKQVEDFAMVPAKEAKD 396
Query: 405 ILYKLWKDGYLLMEKLVVTG--ARQSQFLLWKVNRQILWKHVLDEMFHAALNLSLRVSYE 462
+LY L + ++++ T A F L+ N+ + +L + NL R +E
Sbjct: 397 MLYMLLSQNLVQLQEIPKTPDFAPSRTFYLYTCNQLPTARMLLQNCYKTVANLIERRLFE 456
Query: 463 LDREKELL 470
K LL
Sbjct: 457 SKESKRLL 464
>gi|410968182|ref|XP_003990588.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC3 [Felis
catus]
Length = 534
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 106/487 (21%), Positives = 208/487 (42%), Gaps = 66/487 (13%)
Query: 13 VITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQP 72
++ HFG++V K+ L+R G + + T S +QVK AL VLIQ N V
Sbjct: 12 LLQEHFGEIVEKIGVHLIRTGSQPLRVIAHDTGTSLDQVKKALCVLIQHNLVI------- 64
Query: 73 DGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTL---- 128
+ + +Y +L +R+ +++ + +V+ LL +G++T+
Sbjct: 65 --YQVHKRGVVEYEAQCSRVLRMLRYPRYIYTAKTLYSDTGELIVEELLLNGKMTMSAVV 122
Query: 129 KQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEGPARKKGS 188
K++ DR + ++G +D + T V+L H+V+RCP +P++E
Sbjct: 123 KKVADRLTETMEDGKTMDYSEVSNTFVRLADTHFVQRCP-----WVPVTENSD-PGPPPP 176
Query: 189 KSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGE-KRKHDVL 247
I E + +P + S++ G++ ++S+ GE K K
Sbjct: 177 APILVISEKDMY-------LVP----KLSLIGK-----GKRRRSSDEDAAGEPKAKRPKH 220
Query: 248 ELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQATSSAEKK 307
D + + ++AN + F + R + + V +D ++ ++ ML+ + +
Sbjct: 221 GTDNKEPIPDDGIYWQANLDRFHQHFRDQAIVSAVANRMDQTSSEIVRTMLRMS-----E 275
Query: 308 VKTKNSVPLSLSSIYEEVIKS-EAGRNMT---------------LDHVRAS------LVQ 345
+ T ++ P + E+ +S G N++ L+ V S +
Sbjct: 276 ITTPSTAPFTQPLSSNEIFRSLPVGYNISKQVLDQYLTLLADDPLEFVGKSGDSGGGMYV 335
Query: 346 LDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKI 405
++ K + +ESVV +R+G RIFRL+ + + LE ++ D + K+A +
Sbjct: 336 INLHKALGSLATATLESVVQERFGSRCARIFRLVLQK-KHLEQKQVEDFAMIPAKEAKDM 394
Query: 406 LYKLWKDGYLLMEKLVVTG--ARQSQFLLWKVNRQILWKHVLDEMFHAALNLSLRVSYEL 463
LYK+ + ++ ++++ T A F L+ VN + +L + + NL R +E
Sbjct: 395 LYKMLSENFISLQEIPKTPDHAPSRTFYLYTVNILSAARMLLHRCYKSIANLIERRQFET 454
Query: 464 DREKELL 470
K LL
Sbjct: 455 KENKRLL 461
>gi|395842050|ref|XP_003793833.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC3 [Otolemur
garnettii]
Length = 534
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 105/487 (21%), Positives = 206/487 (42%), Gaps = 66/487 (13%)
Query: 13 VITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQP 72
++ HFG++V K+ L+R G + + T S +QVK AL VLIQ N V
Sbjct: 12 LLQEHFGEIVEKIGVHLIRTGSQPLKVIAHDTGTSLDQVKKALCVLIQHNLVI------- 64
Query: 73 DGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTL---- 128
+ + +Y +L +R+ +++ + +V+ LL +G+LT+
Sbjct: 65 --YQVHKRGVVEYEAQCSRVLQMLRYPRYIYTTKTLYSDPGELIVEELLLNGKLTMSAVV 122
Query: 129 KQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEGPARKKGS 188
K++ DR + ++G +D + T +L H+V+RCP L+P ++ P +
Sbjct: 123 KKVADRLTETMEDGKTMDYAEVSNTFARLADTHFVQRCP-----LVPTTDNSDPGPPPPA 177
Query: 189 KSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGE-KRKHDVL 247
+ V+ + S++ G++ ++S+ GE K K
Sbjct: 178 PTL------------VINEKDMYLVPKLSLIGK-----GKRRRSSDEDAAGEPKAKRPKH 220
Query: 248 ELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQATSSAEKK 307
D + + ++AN + F + R + + V +D ++ ++ ML+ + +
Sbjct: 221 TTDNKEPIPDDGIYWQANLDRFHQHFRDQAIVSAVANRMDQTSSEIVRTMLRMS-----E 275
Query: 308 VKTKNSVPLSLSSIYEEVIKS-EAGRNMT---------------LDHVRAS------LVQ 345
+ T + P + E+ +S G N++ L+ V S +
Sbjct: 276 ITTPSGAPFTQPLSSNEIFRSLPVGYNISKQVLDQYLTLLADDPLEFVGKSGDSGGGMYV 335
Query: 346 LDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKI 405
++ K + +ESVV +R+G RIFRL+ + + LE ++ D + K+A +
Sbjct: 336 INLHKALASLATATLESVVQERFGSRCARIFRLVLQK-KHLEQKQVEDFAMIPAKEAKDM 394
Query: 406 LYKLWKDGYLLMEKLVVTG--ARQSQFLLWKVNRQILWKHVLDEMFHAALNLSLRVSYEL 463
LYK+ + ++ ++++ T A F L+ VN + +L + + NL R +E
Sbjct: 395 LYKMLSENFISLQEIPKTPDHAPSRTFYLYTVNILSAARMLLHRCYKSIANLIERRQFET 454
Query: 464 DREKELL 470
K LL
Sbjct: 455 KENKRLL 461
>gi|431896577|gb|ELK05989.1| DNA-directed RNA polymerase III subunit RPC3 [Pteropus alecto]
Length = 577
Score = 95.9 bits (237), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 107/487 (21%), Positives = 211/487 (43%), Gaps = 66/487 (13%)
Query: 13 VITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQP 72
++ HFG++V K+ L+R G + + + T S +QVK AL VLIQ N V
Sbjct: 56 LLQEHFGEIVEKIGVHLIRNGSQSLRVIAHDTGTSLDQVKKALCVLIQHNLVI------- 108
Query: 73 DGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTL---- 128
+ + +Y +L +R+ +++ I + +V+ LL +G++T+
Sbjct: 109 --YQVHKRGVVEYEAQCSRVLRMLRYPRYIYIAKTLYSDTGELIVEELLLNGKMTMSAVV 166
Query: 129 KQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEGPARKKGS 188
K++ DR + ++G +D + T ++L H+V+RCP ++P +E P +
Sbjct: 167 KKVADRLTETMEDGKTMDYAEVSNTFMRLADTHFVQRCP-----MVPATENSDPGPPPPA 221
Query: 189 KSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGE-KRKHDVL 247
+ I E + +P + S++ G++ ++S + GE K K
Sbjct: 222 PTL-VINEKDMY-------LVP----KLSLIGK-----GKRRRSSEDDATGEPKAKRPKH 264
Query: 248 ELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQATSSAEKK 307
D + + ++AN + F + R + + V +D ++ ++ ML+ + +
Sbjct: 265 TTDNKEPIPDDGIYWQANLDRFHQHFRDQAIVSAVANRMDQTSSEIVRTMLRVS-----E 319
Query: 308 VKTKNSVPLSLSSIYEEVIKS-EAGRNMT---------------LDHVRAS------LVQ 345
V T + P + E+ +S G N+ L+ V S +
Sbjct: 320 VTTPSGAPFTQPLSSHEIFRSLPVGYNIAKQVLDQYLTLLADDPLEFVGKSGDSGGGMYV 379
Query: 346 LDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKI 405
++ K + +ESVV +R+G RIFRL+ + + LE ++ D + K+A +
Sbjct: 380 INLHKALGSLATATLESVVQERFGSRCARIFRLVLQK-KHLEQKQVEDFAMIPAKEAKDM 438
Query: 406 LYKLWKDGYLLMEKLVVTG--ARQSQFLLWKVNRQILWKHVLDEMFHAALNLSLRVSYEL 463
LYK+ + ++ ++++ T A F L+ V+ + +L + + NL R +E
Sbjct: 439 LYKMLSENFISLQEIPKTPDHAPSRTFYLYTVSILSAARMLLHRCYKSIANLIERRQFET 498
Query: 464 DREKELL 470
K LL
Sbjct: 499 KENKRLL 505
>gi|395333322|gb|EJF65699.1| hypothetical protein DICSQDRAFT_177158 [Dichomitus squalens
LYAD-421 SS1]
Length = 542
Score = 95.9 bits (237), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 117/496 (23%), Positives = 217/496 (43%), Gaps = 77/496 (15%)
Query: 13 VITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCV-QAFTTEQ 71
++ + FG L AKV LL G L + R+++L V+ ++LVL+Q N + A + ++
Sbjct: 13 IVRSVFGPLTAKVASLLLTHGRLGLSQLVRFSKLKPRIVRASVLVLVQHNLLWHAQSEDE 72
Query: 72 PDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRL----- 126
+ F + NT D L R+R+ +++ + Q + + E+VQ +L+HG+L
Sbjct: 73 GEVF----EINT------DECLMRLRYGRYVWLAEQVYGKAGAEIVQLILDHGKLRPPDI 122
Query: 127 -TLKQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEGPARK 185
+ ++D K+ + +TL KLV A Y++ P++ ++ +S + R
Sbjct: 123 VSQLSIYDPIKAPA---------VISQTLHKLVEATYLK--PST--VISHLSPRDKRIRY 169
Query: 186 KGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGEKRKHD 245
+ + K G P E + A + R +G K K + +++ +
Sbjct: 170 ETEEKRKISGFPTAKE---LRQAKEIADARLRREEEEAEQIGMKRKAKDQYKSSKRKAME 226
Query: 246 VLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQATSSAE 305
++ V DE V +R N E F +R+K ++ A VL A L+AT +
Sbjct: 227 ----EDLEVDDE--VYFRVNCERFNVHIRNKLIEATAAERFNECTALVLRATLKATEPKQ 280
Query: 306 KKVKTKNSVPLSLSSIYEE-----------VIKSE------------------------A 330
+K+ S P SL++I V++S A
Sbjct: 281 RKLSDVRSDPTSLANIAMHLPDDVDLSAGLVLQSSKKPSTMTLMKEYLGFLSSADNPTPA 340
Query: 331 GRNMTLDHVRASLVQLDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDK 390
GR+ + + S VQ++FE I + +E+V +R+G + RI RLL +G +++ +
Sbjct: 341 GRSASFVSMSGSKVQVEFEIIARRLRRRVLEAVARERHGDEGVRIIRLLLDTG-MMDEKQ 399
Query: 391 ISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTGARQS--QFLLWKVNRQILWKHVLDEM 448
IS + KD +L + + + ++++ + R F LW V+ Q + +LD M
Sbjct: 400 ISKVGMMAPKDVRPLLSSMSAESLVSLQEVPKSADRNPTRMFYLWYVDLQKAYNVLLDNM 459
Query: 449 FHAALNLSLRVSYELD 464
+ N++ R E D
Sbjct: 460 YKTLFNITARRQAEQD 475
>gi|390598265|gb|EIN07663.1| hypothetical protein PUNSTDRAFT_103720 [Punctularia strigosozonata
HHB-11173 SS5]
Length = 541
Score = 95.5 bits (236), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 114/492 (23%), Positives = 208/492 (42%), Gaps = 73/492 (14%)
Query: 7 TKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQA 66
T+ ++ +HFG L A V LL +G L + RYT L V+ ++LVL+Q N +
Sbjct: 7 TRLCTQIVHSHFGPLTANVASTLLTRGRLPLSTIIRYTGLKPRTVRASVLVLVQHNILWH 66
Query: 67 FTTEQPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRL 126
+E DG N + V D+ L R+RF +++ + + ++VQ +L+HG+L
Sbjct: 67 TVSE--DG-------NEVFEVNVDDCLARLRFGRYVQQAEELLGKAARDIVQIILDHGKL 117
Query: 127 TLKQMFDRAKSSEKEGNLVDLDS-----LRETLVKLVTAHYVERCPASEPLLMPISEEEG 181
+ +E L D+ + + LV++ Y++ + +L +S +
Sbjct: 118 ---------RQAEVLAYLAQYDTKAQSRYSQAMHNLVSSSYLK----ASTVLSHVSPRDK 164
Query: 182 PARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGEK 241
+ + + AK G P +Q+ EA EA R + +G K K
Sbjct: 165 RIKYEAEEKAKITGFPTA--KQLREAKELAEA-RLKRERDEAEKIGLKRVTKETGYKSSK 221
Query: 242 RKHDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQAT 301
RK + E V D+ V +R N E F +R+K V + AA V+ A L+ T
Sbjct: 222 RK----AVTEEDVVDDD-VYFRVNCERFNVHIRNKLIESAVLERFNQSAAAVIRATLKTT 276
Query: 302 SSAEKKVKTKNSVPLSLSSIYE-----------------------EVIK----------- 327
+ + V S P S+++I + +IK
Sbjct: 277 EAKQMSVSDVRSDPTSVANISQCLADDDDLESGLVLNTSKTPSSIALIKHYIGVLSAADN 336
Query: 328 -SEAGRNMTLDHVRASLVQLDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLL 386
+ AG+ + + S VQ++FE I + +E+V +R+G + RI RLL +G++
Sbjct: 337 PTPAGKASSFVSMTNSKVQVEFEIIARRLRRRILENVTRERHGDEGVRILRLLMDTGKMD 396
Query: 387 ETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTGARQS--QFLLWKVNRQILWKHV 444
E ++ + KD +L + D + ++++ + R F LW V+ + ++
Sbjct: 397 EK-QVGKIAMMAPKDVRPLLSAMATDSIITIQEVPRSADRNPTRTFYLWFVDVDKAYSNL 455
Query: 445 LDEMFHAALNLS 456
+ ++ N+S
Sbjct: 456 IRSLYKTLYNIS 467
>gi|344306663|ref|XP_003422005.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC3-like
[Loxodonta africana]
Length = 534
Score = 95.1 bits (235), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 112/500 (22%), Positives = 216/500 (43%), Gaps = 70/500 (14%)
Query: 2 LTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQ 61
+T+ K ++ HFG++V K+ L+R G + + T S +QVK AL VLIQ
Sbjct: 1 MTQAEIKLCSLLLQEHFGEIVEKIGVHLIRTGSQPLRVIAHDTGTSLDQVKKALCVLIQH 60
Query: 62 NCVQAFTTEQPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLL 121
N V + + +Y +L +R+ +++ + +V+ LL
Sbjct: 61 NLVT---------YQVHKRGVVEYEAQCSRVLRMLRYPRYIYTSKTLYSDTGELIVEELL 111
Query: 122 EHGRLTL----KQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPIS 177
+G++T+ K++ DR + ++G +D + T V+L H+V+RCP L+P +
Sbjct: 112 LNGKMTMSAVVKKVADRLTETMEDGKTMDYAEVSNTFVRLADTHFVQRCP-----LVPAT 166
Query: 178 EEEGPARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVT 237
E P + + I E + +P + S++ G++ ++S
Sbjct: 167 ENSDPGPPPPAPTL-VINEKDMY-------LVP----KLSLIGK-----GKRRRSSEEDA 209
Query: 238 PGE---KRKHDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVL 294
GE KR E E + D+ + ++AN + F + R + + V +D ++ ++
Sbjct: 210 AGEPKAKRLKHTTENKE-PIPDD-GIYWQANLDRFHQHFRDQTIVSAVANRMDQTSSEIV 267
Query: 295 SAMLQATSSAEKKVKTKNSVPLSLSSIYEEVIKS-EAGRNMT---------------LDH 338
ML+ + ++ T + P + E+ +S G N++ L+
Sbjct: 268 RTMLRMS-----EITTPSCAPFTQPLSSNEIFRSLPVGYNISKQVLDQYLTLLADDPLEF 322
Query: 339 VRAS------LVQLDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKIS 392
V S + ++ K + +ESVV +R+G RIFRL+ + + LE ++
Sbjct: 323 VGKSGDSGGGMYVINLHKALASLATATLESVVQERFGSRCARIFRLVLQK-KHLEQKQVE 381
Query: 393 DTTFVEKKDAPKILYKLWKDGYLLMEKLVVTG--ARQSQFLLWKVNRQILWKHVLDEMFH 450
D + K+A +LYK+ + ++ ++++ T A F L+ VN + +L +
Sbjct: 382 DFAMIPAKEAKDMLYKMLSENFISLQEIPKTPDHAPSRTFYLYTVNILSAARMLLHRCYK 441
Query: 451 AALNLSLRVSYELDREKELL 470
+ NL R +E K LL
Sbjct: 442 SIANLIERRQFETKENKRLL 461
>gi|281353327|gb|EFB28911.1| hypothetical protein PANDA_013978 [Ailuropoda melanoleuca]
Length = 533
Score = 95.1 bits (235), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 105/487 (21%), Positives = 206/487 (42%), Gaps = 66/487 (13%)
Query: 13 VITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQP 72
++ HFG++V K+ L+R G + + T S +QVK AL VLIQ N V
Sbjct: 12 LLQEHFGEIVEKIGVHLIRTGSQPLRAIAHDTGTSLDQVKKALCVLIQHNLVI------- 64
Query: 73 DGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTL---- 128
+ + +Y +L +R+ +++ + +V+ LL +G++T+
Sbjct: 65 --YQVHKRGVVEYEAQCSRVLRMLRYPRYIYTAKTLYSDTGELIVEELLLNGKMTMSAVV 122
Query: 129 KQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEGPARKKGS 188
K++ DR + ++G +D + T V+L H+V+RCP PA +
Sbjct: 123 KKVADRLTETMEDGKTMDYAEVSNTFVRLADTHFVQRCPWV------------PATENSD 170
Query: 189 KSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGE-KRKHDVL 247
I ++ + +P + S++ G++ ++S+ GE K K
Sbjct: 171 PGPPPPAPILVISEKDM-YLVP----KLSLIGK-----GKRRRSSDEDAAGEPKAKRPKH 220
Query: 248 ELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQATSSAEKK 307
D + + ++AN + F + R + + V +D ++ ++ ML+ + +
Sbjct: 221 STDNKEPIPDDGIYWQANLDRFHQHFRDQAIVSAVANRMDQTSSEIVRTMLRMS-----E 275
Query: 308 VKTKNSVPLSLSSIYEEVIKS-EAGRNMT---------------LDHVRAS------LVQ 345
+ T ++ P + E+ +S G N++ L+ V S +
Sbjct: 276 ITTPSTAPFTQPLSSNEIFRSLPVGYNISKQVLDQYLTLLADDPLEFVGKSGDSGGGMYV 335
Query: 346 LDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKI 405
++ K + +ESVV +R+G RIFRL+ + + LE ++ D + K+A +
Sbjct: 336 INLHKALGSLATATLESVVQERFGSRCARIFRLVLQK-KHLEQKQVEDFAMIPAKEAKDM 394
Query: 406 LYKLWKDGYLLMEKLVVTG--ARQSQFLLWKVNRQILWKHVLDEMFHAALNLSLRVSYEL 463
LYK+ ++ ++++ T A F L+ VN + +L + + NL R +E
Sbjct: 395 LYKMLSGNFISLQEIPKTPDHAPSRTFYLYTVNILSAARMLLHRCYKSIANLIERRQFET 454
Query: 464 DREKELL 470
K LL
Sbjct: 455 KENKRLL 461
>gi|301778375|ref|XP_002924602.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC3-like
[Ailuropoda melanoleuca]
Length = 534
Score = 94.7 bits (234), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 105/487 (21%), Positives = 206/487 (42%), Gaps = 66/487 (13%)
Query: 13 VITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQP 72
++ HFG++V K+ L+R G + + T S +QVK AL VLIQ N V
Sbjct: 12 LLQEHFGEIVEKIGVHLIRTGSQPLRAIAHDTGTSLDQVKKALCVLIQHNLVI------- 64
Query: 73 DGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTL---- 128
+ + +Y +L +R+ +++ + +V+ LL +G++T+
Sbjct: 65 --YQVHKRGVVEYEAQCSRVLRMLRYPRYIYTAKTLYSDTGELIVEELLLNGKMTMSAVV 122
Query: 129 KQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEGPARKKGS 188
K++ DR + ++G +D + T V+L H+V+RCP PA +
Sbjct: 123 KKVADRLTETMEDGKTMDYAEVSNTFVRLADTHFVQRCPWV------------PATENSD 170
Query: 189 KSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGE-KRKHDVL 247
I ++ + +P + S++ G++ ++S+ GE K K
Sbjct: 171 PGPPPPAPILVISEKDM-YLVP----KLSLIGK-----GKRRRSSDEDAAGEPKAKRPKH 220
Query: 248 ELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQATSSAEKK 307
D + + ++AN + F + R + + V +D ++ ++ ML+ + +
Sbjct: 221 STDNKEPIPDDGIYWQANLDRFHQHFRDQAIVSAVANRMDQTSSEIVRTMLRMS-----E 275
Query: 308 VKTKNSVPLSLSSIYEEVIKS-EAGRNMT---------------LDHVRAS------LVQ 345
+ T ++ P + E+ +S G N++ L+ V S +
Sbjct: 276 ITTPSTAPFTQPLSSNEIFRSLPVGYNISKQVLDQYLTLLADDPLEFVGKSGDSGGGMYV 335
Query: 346 LDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKI 405
++ K + +ESVV +R+G RIFRL+ + + LE ++ D + K+A +
Sbjct: 336 INLHKALGSLATATLESVVQERFGSRCARIFRLVLQK-KHLEQKQVEDFAMIPAKEAKDM 394
Query: 406 LYKLWKDGYLLMEKLVVTG--ARQSQFLLWKVNRQILWKHVLDEMFHAALNLSLRVSYEL 463
LYK+ ++ ++++ T A F L+ VN + +L + + NL R +E
Sbjct: 395 LYKMLSGNFISLQEIPKTPDHAPSRTFYLYTVNILSAARMLLHRCYKSIANLIERRQFET 454
Query: 464 DREKELL 470
K LL
Sbjct: 455 KENKRLL 461
>gi|440792790|gb|ELR13998.1| RNA polymerase III subunit RPC82 helixturn-helix domain containing
protein [Acanthamoeba castellanii str. Neff]
Length = 328
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 91/329 (27%), Positives = 142/329 (43%), Gaps = 32/329 (9%)
Query: 13 VITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQP 72
++T HFGD++ KV LL + L ++ TEL QVKN+LLVLIQ N V +F E P
Sbjct: 10 IVTEHFGDVIGKVAGALLTRDRLLMHELESITELEFLQVKNSLLVLIQHNLV-SFIEEHP 68
Query: 73 DGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTLKQMF 132
+G + Q V F IL R+RF +FL + F + +VQ LLEHGRLT +
Sbjct: 69 EGNPQDVQTYYQASVSF--ILWRLRFPRFLQVAKHRFGDEGRLMVQVLLEHGRLTHDLIL 126
Query: 133 DRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMP---ISEEEGPARKKGSK 189
A + + L +L+ +V R P + P P IS + ARK
Sbjct: 127 QHAAQA------AGFELADTMLTELIRQRFVVRVPEA-PGPQPAVDISTQLNAARKAKPG 179
Query: 190 SAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGE---KEKNSNNVTPGEKRKHDV 246
+ E + + MR S ++N+ E K++ S + K
Sbjct: 180 AGGDEDEDDGV------------GMR-SGLSNLSEGYREAKPKKRKSKGAPKDPQPKRQN 226
Query: 247 LELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQATSSAEK 306
++ + D V + N E F RH+ I V +D A L M +
Sbjct: 227 IDPLSGRITD---VYWCINPERFNMHFRHEAIIKMVEEKVDATAGIYLRVMFKMIEPYIH 283
Query: 307 KVKTKNSVPLSLSSIYEEVIKSEAGRNMT 335
+ +SV +S + +++E+ K + ++T
Sbjct: 284 SLSDHDSVSVSTTELWQELKKEYSSEDIT 312
>gi|302690682|ref|XP_003035020.1| hypothetical protein SCHCODRAFT_14169 [Schizophyllum commune H4-8]
gi|300108716|gb|EFJ00118.1| hypothetical protein SCHCODRAFT_14169 [Schizophyllum commune H4-8]
Length = 517
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 121/504 (24%), Positives = 211/504 (41%), Gaps = 91/504 (18%)
Query: 11 VHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTE 70
+I +HFG L AKV + LL +G L + R T L V+ A LVL+Q N +
Sbjct: 11 AQIINSHFGPLTAKVADALLTRGRLPVPQIVRATGLRPRTVRAACLVLLQHNVLW----- 65
Query: 71 QPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTLKQ 130
+A P + + + R+RF + + Q F Q ++VQ +L+HG+L
Sbjct: 66 ----YALDPIDGEVLEISPEECMLRLRFGRAVWQAGQLFGQAGSDIVQLVLDHGKLRPPH 121
Query: 131 MFDR-AKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEGPARKKGSK 189
+ ++ + SS KE +L R+TL KLVT Y++ P+ K
Sbjct: 122 IVEQLSLSSPKETSL-----HRQTLHKLVTLAYLK-----------------PSTPKRHL 159
Query: 190 SAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGEKRKHDVLEL 249
S + +E++ A P E + +R+ D E
Sbjct: 160 SPRDKAIKYELEEKAKIAGFPT--------------AKELREAKEAAVARLRREED--ED 203
Query: 250 DECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQATSSAEKKVK 309
CG+ DE V +R NF+ F +R++ R ++GAA V+ A+L+AT S + +
Sbjct: 204 AACGL-DE--VYFRVNFDKFNTHIRNQLIEKAARERFNEGAAAVMRAVLKATESTQTSLT 260
Query: 310 TKNSVPLSLSSIYEEVIK------------SEAGRNMTLDHV--------------RASL 343
+ S +S+ +I + + S+A ++ H RAS
Sbjct: 261 EERSDAVSIGNIILNIPEDADLASGLAISASKASKSTCTKHYLHLLACADNPTPTGRASA 320
Query: 344 -------VQLDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDK-ISDTT 395
+Q +F I + +E+ +++G + R+ RLL SG+ + DK ++
Sbjct: 321 FLSYGSKIQAEFGLIGRRLRRHVLEASAREKHGPNGLRVVRLLLGSGK--QDDKQVAHGV 378
Query: 396 FVEKKDAPKILYKLWKDGYLLMEKLVVTGARQS--QFLLWKVNRQILWKHVLDEMFHAAL 453
+ KD +L L D + +++ T R F LW V++ + +L E++
Sbjct: 379 MLPAKDVRTVLAALAADSLVSTQEVPKTADRNPTRTFYLWHVDQTKAYTVLLGELYKTLY 438
Query: 454 NLSLRVSYELDREKELLNLPADKR 477
N+ +R E RE+ ++ +KR
Sbjct: 439 NIGVRRQAE--REEPMVRAVLEKR 460
>gi|427789313|gb|JAA60108.1| Putative polymerase rna iii dna directed polypeptide c
[Rhipicephalus pulchellus]
Length = 517
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 107/478 (22%), Positives = 207/478 (43%), Gaps = 61/478 (12%)
Query: 13 VITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQP 72
++ +HFG +V V E LL+ + + R T L ++K +L+VLI QN
Sbjct: 12 ILKDHFGPVVQTVGEALLKVSWRSLGEIARATNLPLSKIKKSLMVLIHQNLA-------- 63
Query: 73 DGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTLKQMF 132
F P+ +Y + D +L VR+++++ + + +V+ +L +GRL + +
Sbjct: 64 -NFEAHPRGTVKYSINADRVLCLVRYSRYIYCTKLLYGEAGEFIVEEILLNGRLCMSSVL 122
Query: 133 DRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEGPARKKGSKSAK 192
K E++ + ++E V LV ++ R P +P + PA K S
Sbjct: 123 Q--KVLERQQGAGTAEGVKEKFVDLVKTGFLCRVPYPDP--------DAPASKIPS---- 168
Query: 193 KIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGEKRKHDVLELDEC 252
+ P+ + ++ E L + + S + E P +K K + + D+
Sbjct: 169 -LILPDDVMYKIPEVKLYLLKQKLSAEASEEP-------------PAKKVKMEDPQGDK- 213
Query: 253 GVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQATSSAEKKVKTKN 312
DE+ +R N + F + LR + ++ + + A V+ ML+ S K
Sbjct: 214 -QPDEKE-YWRVNIDRFDQHLRDQLIVEALSKRMGAKAGEVVRTMLR-LSETRCNPKDAF 270
Query: 313 SVPLSLSSIYEEVIKSEAGRNMTLDHV-----------------RASLVQLDFEKIIEIA 355
S P+S S I++ + + LD R + ++ E + +
Sbjct: 271 SAPVSRSEIHQFLKRETTFSPQELDSYLSLVADDALGLVRRTDERGGMFSVNLELALRLL 330
Query: 356 QNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYL 415
+ S+V R+G + RIFRLL + + LE +I + + +DA ++ YK++++ ++
Sbjct: 331 AEGVLASIVQDRFGAKSCRIFRLLLQK-KYLEQKQIEELAMITARDAKEMTYKMFEEKFV 389
Query: 416 LMEKLVVTG--ARQSQFLLWKVNRQILWKHVLDEMFHAALNLSLRVSYELDREKELLN 471
L ++L T A L+ V+ L + VL+ + A N+ LR + + +K LL+
Sbjct: 390 LAQELPRTPDYAPSRMIYLFHVDIPQLSRQVLEWCYKAMSNMMLRRMHVTEEQKRLLD 447
>gi|389741288|gb|EIM82477.1| hypothetical protein STEHIDRAFT_171381 [Stereum hirsutum FP-91666
SS1]
Length = 552
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 122/518 (23%), Positives = 222/518 (42%), Gaps = 100/518 (19%)
Query: 1 MLTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQ 60
M E + V +I HFG L +KV LL +G L+ ++ R++ L V+ ++LVL+Q
Sbjct: 1 MADEDTARLCVQIIHTHFGPLTSKVASTLLTRGRLSFPHLVRFSSLKPRTVRASILVLVQ 60
Query: 61 QNCVQAFTTEQPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGL 120
N + ++ DG + V ++ L R+R+ +++ + Q F + ++VQ +
Sbjct: 61 HNLLWHAQSDD-----DGE----VFEVNVEDCLTRLRYGRYVWLAEQLFGKAAADIVQLI 111
Query: 121 LEHGRL----TLKQM--FDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPA------ 168
L+HG+L + QM F AK S K + L LV++ Y++ A
Sbjct: 112 LDHGKLRPPDIISQMPIFLDAKESAK---------YTQALFTLVSSSYLKPATALSHQST 162
Query: 169 SEPLLMPISEEEGPARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESD--- 225
++ L +EE+ A+ G +AK++ E ++V ++ L E E D
Sbjct: 163 TDTRLKYFAEEK--AKVVGYPTAKQLREA----KEVADSRLKRE----------EEDAEK 206
Query: 226 VGEKEKNSNNVTPGEKRKHDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAH 285
+G K K ++ V E + V +R N + F +R+K R
Sbjct: 207 IGLKRKAREQGGRKSSKRQAVEE-----EVVDDDVFFRVNAQKFNIHIRNKLIESAARER 261
Query: 286 LDDGAANVLSAMLQATSSAEKKVKTKNSVPLSLSSIY-----EEVIK------------- 327
+DGAA V+ A L+AT S +K V S ++++I E+V
Sbjct: 262 FNDGAALVMRAALKATESKQKSVADVRSDSTTVATIAMHLSDEDVSTLSSTLITSSKSTS 321
Query: 328 -------------------------SEAGRNMTLDHVRASLVQLDFEKIIEIAQNEEVES 362
+ AGR + S + ++FE + + + +E+
Sbjct: 322 SSSSSKKTITLLQNFLGMLSFADNPTAAGRAASFVSFSGSKLFVEFETVGKRLRRRVLEA 381
Query: 363 VVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVV 422
V +R+G D R+ RLL +G++ E +IS + KD +L + + + ++++
Sbjct: 382 VTRERHGEDGVRVLRLLMDTGKVDE-KQISKVAMMAPKDCRPLLSAMSAESLISIQEVPK 440
Query: 423 TGARQS--QFLLWKVNRQILWKHVLDEMFHAALNLSLR 458
+ R F LW V++Q + +L ++ N+SLR
Sbjct: 441 SADRNPTRTFYLWYVDQQKAYSVLLLNLYKTLYNISLR 478
>gi|346468825|gb|AEO34257.1| hypothetical protein [Amblyomma maculatum]
Length = 516
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 113/484 (23%), Positives = 206/484 (42%), Gaps = 74/484 (15%)
Query: 13 VITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQP 72
++ HFG +V V ECLL+ T + R T L ++K +LLVLI QN V+ P
Sbjct: 12 ILKEHFGAVVQSVGECLLKVTSRTLAEIARATNLPLSKIKKSLLVLIHQNFVEFHA--HP 69
Query: 73 DGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRL----TL 128
GFA +Y + D +L +R+ +++ + +++ +L +GRL +
Sbjct: 70 RGFA-------KYSIHADRVLCMLRYPRYIYCAKLLYGDAGEFIIEEVLLNGRLCMSAVI 122
Query: 129 KQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEGPARKKGS 188
+++ DR +GN + +++ V LV +++ R P +P + + P
Sbjct: 123 QKVLDRL-----QGN-STAEEVKQKFVDLVQTNFLVRVPYPDP---NVEGTKIPTLVLRE 173
Query: 189 KSAKKIGEPE--TIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGEKRKHDV 246
+ KI + + ++Q EA+L A + E+ GEK+ P EK
Sbjct: 174 EDVHKIPQVKLYLMKQNYGEASLEPPAKKI----KTENLDGEKQ-------PDEKE---- 218
Query: 247 LELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQATSSAEK 306
+R NF+ F + LR + + V + A V+ ML+ S
Sbjct: 219 --------------YWRVNFDRFHQHLRDQLVVQAVSKRMGSKAGEVVRTMLR-LSETRS 263
Query: 307 KVKTKNSVPLSLSSIYEEVIKSEAGRNMTLDHV-----------------RASLVQLDFE 349
K SVP+S S I++ + K + LD R + ++ E
Sbjct: 264 HPKDVFSVPVSRSEIHQALKKEINISSQELDSYLSLIADDALLLVRRTDERGGMFSVNLE 323
Query: 350 KIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKL 409
+ + + + S+V R+G + RIFRLL + E +I + + +DA + YK+
Sbjct: 324 RAVRLLAEAVLTSIVQDRFGAKSCRIFRLLL-VKKYTEQKQIEELAMIPARDAKEWTYKM 382
Query: 410 WKDGYLLMEKLVVTG--ARQSQFLLWKVNRQILWKHVLDEMFHAALNLSLRVSYELDREK 467
+++ +++ ++L T A L+ V+ L + VL+ + A NL R + K
Sbjct: 383 FEEKFIMAQELPRTPDYAPSRMIYLFYVDIPQLSRRVLEWCYQALTNLVQRRDHITQEHK 442
Query: 468 ELLN 471
L++
Sbjct: 443 RLVD 446
>gi|351703764|gb|EHB06683.1| DNA-directed RNA polymerase III subunit RPC3 [Heterocephalus
glaber]
Length = 534
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 107/501 (21%), Positives = 211/501 (42%), Gaps = 72/501 (14%)
Query: 2 LTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQ 61
+T+ K ++ HFG++V K+ L+R G + + T S +QVK AL VLIQ
Sbjct: 1 MTQAEIKLCSLMLQEHFGEIVEKIGVHLIRTGSQPLRVIVHDTGTSLDQVKKALCVLIQH 60
Query: 62 NCVQAFTTEQPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLL 121
N V + + +Y +L +R+ +++ + +V+ LL
Sbjct: 61 NLVI---------YQVHKRGVVEYEAHCSRVLRMLRYPRYIYTTKALYGDTGELIVEELL 111
Query: 122 EHGRLTL----KQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPIS 177
+G++T+ K++ DR + ++G +D + T ++L +V+RCP + P +
Sbjct: 112 LNGKMTMSAVVKKVADRLTETVEDGKTMDYAEVSNTFMQLADTRFVQRCPM---VHAPEN 168
Query: 178 EEEGPARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVT 237
+ P P V+ + S++ G++ ++S+
Sbjct: 169 SDTQP--------------PPPAPNLVINEKDMYLVPKLSLIGK-----GKRRRSSDEDA 209
Query: 238 PGE----KRKHDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANV 293
GE + KH D + + ++AN + F + R + + V +D ++ +
Sbjct: 210 AGEPAAKRPKHPT---DNKEPIPDDGIYWQANLDRFHQHFRDQTIVSAVANRMDQTSSEI 266
Query: 294 LSAMLQATSSAEKKVKTKNSVPLSLSSIYEEVIKS-EAGRNMT---------------LD 337
+ AML+ + +V T + P + E+ +S G N++ L+
Sbjct: 267 VRAMLRMS-----EVTTSSDAPFTQPLSSNEIFRSLPVGYNISKQVLDQYLTLLADDPLE 321
Query: 338 HVRAS------LVQLDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKI 391
V S + ++F K + +ESV+ +R+G RIFRL+ + + LE ++
Sbjct: 322 FVGKSGDSGGGMYVINFCKALASLATATLESVIQERFGSRCARIFRLVLQK-KHLEQKQV 380
Query: 392 SDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTG--ARQSQFLLWKVNRQILWKHVLDEMF 449
D + K+A +LYK+ + ++ ++++ T A F L+ VN + +L +
Sbjct: 381 EDFAMIPAKEAKDMLYKMLSENFISLQEIPKTPDHAPSRTFYLYTVNVLSAARMLLHRCY 440
Query: 450 HAALNLSLRVSYELDREKELL 470
+ NL R +E K LL
Sbjct: 441 KSVTNLIERRQFETKENKRLL 461
>gi|126313694|ref|XP_001368997.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC3
[Monodelphis domestica]
Length = 535
Score = 92.8 bits (229), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 109/500 (21%), Positives = 213/500 (42%), Gaps = 69/500 (13%)
Query: 2 LTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQ 61
+T+ K ++ HFG++V K+ L+R G + + T S +QVK AL VLIQ
Sbjct: 1 MTQAEIKLCSLLLQEHFGEIVDKIGTHLIRTGGQPLRVIVHDTGTSLDQVKKALCVLIQH 60
Query: 62 NCVQAFTTEQPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLL 121
N V + + +Y IL +R+ +++ + +V+ LL
Sbjct: 61 NLVT---------YQIHKRGIVEYEAHCSRILRILRYPRYIYTAKTLYSDTGELIVEELL 111
Query: 122 EHGRLTL----KQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPIS 177
+G++T+ K++ DR + ++G +D + T +L H+V+RCP +P
Sbjct: 112 LNGKMTMSAVVKKVADRLTETMEDGKTMDYSEVSSTFGRLADTHFVQRCP-----FVPDP 166
Query: 178 EEEGPARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVT 237
+ A+ I E + +P + +++ G++ ++S++
Sbjct: 167 TDSADAQPPPPAPTLSINEKDMY-------LVP----KLNLIGK-----GKRRRSSDDDA 210
Query: 238 PGE---KRKHDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVL 294
GE KR E E + D+ + ++AN + F + R + + V +D ++ ++
Sbjct: 211 AGEPKPKRPKQTAESKE-PIPDD-GIYWQANLDRFHQHFRDQSIVSAVANRMDQTSSEIV 268
Query: 295 SAMLQATSSAEKKVKTKNSVPLSLSSIYEEVIKS-EAGRNMT---------------LDH 338
ML+ + ++ T + P + E+ +S G N++ L+
Sbjct: 269 RTMLRMS-----EITTSSCAPFTQPLSSNEIFRSLPVGYNISKQVLDQYLTLLADDPLEF 323
Query: 339 VRAS------LVQLDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKIS 392
V S + ++ K + +ES+V +R+G RIFRL+ + + LE ++
Sbjct: 324 VGKSGDSGGGMYVINLHKALASLAMATLESIVQERFGSRCARIFRLVLRK-KHLEQKQVE 382
Query: 393 DTTFVEKKDAPKILYKLWKDGYLLMEKLVVTG--ARQSQFLLWKVNRQILWKHVLDEMFH 450
D + K+A +LYKL + + ++++ T A F L+ VN + +L +
Sbjct: 383 DFAMIPAKEAKDMLYKLLSENLISLQEIPKTPDHAPSRTFYLYTVNSLSAARMLLRRCYK 442
Query: 451 AALNLSLRVSYELDREKELL 470
+ NL R +E K LL
Sbjct: 443 SIANLIERRQFETKENKRLL 462
>gi|354472867|ref|XP_003498658.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC3 [Cricetulus
griseus]
gi|344238652|gb|EGV94755.1| DNA-directed RNA polymerase III subunit RPC3 [Cricetulus griseus]
Length = 533
Score = 92.0 bits (227), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 99/486 (20%), Positives = 198/486 (40%), Gaps = 65/486 (13%)
Query: 13 VITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQP 72
++ HFG++V K+ L+R G + + T S +QVK AL VLI N V
Sbjct: 12 LLQEHFGEIVEKIGVHLIRTGSQPLRVIAHDTGTSLDQVKKALCVLIHHNLVI------- 64
Query: 73 DGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTL---- 128
+ ++ +Y +L +R+ +++ + +V+ LL +G++T+
Sbjct: 65 --YRVHKRSVVEYEAQCSRVLRMLRYPRYIYTTKTLYSDTGELIVEELLLNGKMTMSAVV 122
Query: 129 KQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEGPARKKGS 188
K++ DR + ++G +D + V+L H+V+RCP L+P + G
Sbjct: 123 KKVADRLTETMEDGKTMDYAEVSNAFVRLADTHFVQRCP-----LVPAT---------GD 168
Query: 189 KSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGEKRKHDVLE 248
T+ V+ + S++ G++ ++S+ GE +
Sbjct: 169 SDPGPPPPAPTL---VINEKDMYLVPKLSLIGK-----GKRRRSSDEDASGEPKAKKPKH 220
Query: 249 LDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQATSSAEKKV 308
D + + ++ N + F + R + + V +D ++ ++ ML+ + ++
Sbjct: 221 TDNKEPIPDDGIYWQVNLDRFHQHFRDQAIVSAVANRMDQTSSEIVRTMLRMS-----EI 275
Query: 309 KTKNSVPLSLSSIYEEVIKSEAG----RNMTLDHVRASLVQ------------------L 346
T + P + E+ +S G LD L +
Sbjct: 276 TTPSGAPFTQPLSSNEIFRSLPGSYNISKQVLDQYLTLLADDPLEFIGKSGDSGGGMYVI 335
Query: 347 DFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKIL 406
+ K + +ESV+ +R+G RIFRL+ + + LE ++ D + K+A +L
Sbjct: 336 NLHKALASLATATLESVIQERFGSRCARIFRLVLQK-KHLEQKQVEDFAMIPAKEAKDML 394
Query: 407 YKLWKDGYLLMEKLVVTG--ARQSQFLLWKVNRQILWKHVLDEMFHAALNLSLRVSYELD 464
YK+ + ++ ++++ T A F L+ VN + +L + + NL R +E
Sbjct: 395 YKMLSENFISLQEIPKTPDHAPSRTFYLYTVNVLSAARMLLHRCYKSIANLIERRQFETK 454
Query: 465 REKELL 470
K LL
Sbjct: 455 ENKRLL 460
>gi|444708696|gb|ELW49743.1| DNA-directed RNA polymerase III subunit RPC3 [Tupaia chinensis]
Length = 628
Score = 91.7 bits (226), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 108/501 (21%), Positives = 207/501 (41%), Gaps = 78/501 (15%)
Query: 11 VHVITNHFGDLVAKVCECLLRKGPLTRQNV-----KRYTELSDE-------QVKNALLVL 58
++ + D + E LL G +T V R TE ++ +VK AL VL
Sbjct: 92 IYTTKTLYSDTGELIVEELLLNGKMTMSAVVKKVADRLTETMEDSKTMDYAEVKKALCVL 151
Query: 59 IQQNCVQAFTTEQPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQ 118
IQ N V + + +Y +L +R+ +++ + +V+
Sbjct: 152 IQHNLVI---------YQVHKRGVVEYEAQCGRMLRMLRYPRYIYTTKTLYSDTGELIVE 202
Query: 119 GLLEHGRLTL----KQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLM 174
LL +G++T+ K++ DR + ++ +D + T V+L H+V+RCP L+
Sbjct: 203 ELLLNGKMTMSAVVKKVADRLTETMEDSKTMDYAEVSNTFVRLADTHFVQRCP-----LV 257
Query: 175 PISEEEGPARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSN 234
P +E+ P G P V+ + S++ G++ ++S
Sbjct: 258 PATEKSEP------------GPPLPAPTLVINEKDMYLVPKLSLIGK-----GKRRRSSE 300
Query: 235 NVTPGE-KRKHDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANV 293
GE K K D + + ++AN + F + R + + V +D ++ +
Sbjct: 301 EDAAGEPKAKRPKHSTDNKEPTPDDGIYWQANLDRFRQHFRDQAIVSAVANRMDQTSSEI 360
Query: 294 LSAMLQATSSAEKKVKTKNSVPLSLSSIYEEVIKS-EAGRNMT---------------LD 337
+ ML+ + ++ T +S P +L E+ +S G N++ L+
Sbjct: 361 VRTMLRMS-----EITTPSSAPFTLPLSSNEIFRSLPVGYNISKQVLDQYLTLLADDPLE 415
Query: 338 HVRAS------LVQLDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKI 391
V S + ++ K + +ESVV +R+G RIFRL+ + + LE ++
Sbjct: 416 FVGKSGDSGGGMYVINLHKALASLATATLESVVQERFGSRCARIFRLVLQK-KHLEQKQV 474
Query: 392 SDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTG--ARQSQFLLWKVNRQILWKHVLDEMF 449
D + K+A +LYK+ + ++ ++++ T A F L+ VN + + +L +
Sbjct: 475 EDFAMIPAKEAKDMLYKMLSENFMSLQEIPKTPDHAPSRTFYLYTVNVLSVARMLLHRCY 534
Query: 450 HAALNLSLRVSYELDREKELL 470
+ NL R +E K LL
Sbjct: 535 KSIANLIERRQFETRENKRLL 555
Score = 43.9 bits (102), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 38/166 (22%), Positives = 76/166 (45%), Gaps = 13/166 (7%)
Query: 2 LTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQ 61
+T+ K ++ HFG++V K+ L+R G + + T S +QVK AL VLIQ
Sbjct: 1 MTQAEIKLCSLLLQEHFGEIVEKIGVHLIRTGSQPLRVIAHDTGTSLDQVKKALCVLIQH 60
Query: 62 NCVQAFTTEQPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLL 121
N V + + +Y +L +R+ +++ + +V+ LL
Sbjct: 61 NLVI---------YQVHKRGVVEYEAQCGRMLRMLRYPRYIYTTKTLYSDTGELIVEELL 111
Query: 122 EHGRLTL----KQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYV 163
+G++T+ K++ DR + ++ +D +++ L L+ + V
Sbjct: 112 LNGKMTMSAVVKKVADRLTETMEDSKTMDYAEVKKALCVLIQHNLV 157
>gi|58865732|ref|NP_001012081.1| DNA-directed RNA polymerase III subunit RPC3 [Rattus norvegicus]
gi|81883800|sp|Q5XIL3.1|RPC3_RAT RecName: Full=DNA-directed RNA polymerase III subunit RPC3;
Short=RNA polymerase III subunit C3; AltName:
Full=DNA-directed RNA polymerase III subunit C
gi|53733475|gb|AAH83667.1| Polymerase (RNA) III (DNA directed) polypeptide C (62kD) [Rattus
norvegicus]
gi|149030569|gb|EDL85606.1| rCG51882 [Rattus norvegicus]
Length = 533
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 102/497 (20%), Positives = 207/497 (41%), Gaps = 65/497 (13%)
Query: 2 LTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQ 61
+T+ K ++ HFG++V K+ L+R G + + T+ S +QVK AL VLI
Sbjct: 1 MTQAEIKLCSLLLQEHFGEIVEKIGVHLIRTGSQPLRVIAHDTKASLDQVKKALCVLIHH 60
Query: 62 NCVQAFTTEQPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLL 121
N V + + +Y +L +R+ +++ + +V+ LL
Sbjct: 61 NLVI---------YHVHKRGVVEYEAQCSRVLRMLRYPRYIYTTKTLYGDTGELIVEELL 111
Query: 122 EHGRLTL----KQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPIS 177
+G++T+ K++ DR + ++G +D + V+L H+V+RCP L+P +
Sbjct: 112 LNGKMTMSAVVKKVADRLTETMEDGKTMDYAEVSNAFVRLADTHFVQRCP-----LVPDT 166
Query: 178 EEEGPARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVT 237
+ S P + + +P + S++ G++ ++S+
Sbjct: 167 D--------SSDPGPPPPAPNLVINEKDMYLVP----KLSLIGK-----GKRRRSSDEDA 209
Query: 238 PGEKRKHDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAM 297
GE + D + + ++ N + F + R + + V +D ++ ++ M
Sbjct: 210 AGEPKAKKPRCTDNEEPTPDDGIYWQVNLDRFHQHFRDQAIVSAVANRMDQTSSEIVRTM 269
Query: 298 LQATSSAEKKVKTKNSVPLSLSSIYEEVIKS-EAGRNMT---LDHVRASLVQ-------- 345
L+ + ++ T + P + E+ +S G N++ LD L
Sbjct: 270 LRMS-----EITTPSGAPFTQPLSSNEIFRSLPVGYNISKQVLDQYLTLLADDPLEFIGK 324
Query: 346 ----------LDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTT 395
++ K + +ESV+ +R+G RIFRL+ + + LE ++ D
Sbjct: 325 AGDSGGGMYVINLHKALASLSTATLESVIQERFGSRCARIFRLVLQK-KHLEQKQVEDFA 383
Query: 396 FVEKKDAPKILYKLWKDGYLLMEKLVVTG--ARQSQFLLWKVNRQILWKHVLDEMFHAAL 453
+ K+A +LYK+ + ++ ++++ T A F L+ VN + +L + +
Sbjct: 384 MIPAKEAKDMLYKMLSENFISLQEIPKTPDHAPSRTFYLYTVNVLSAARMLLHRCYKSIA 443
Query: 454 NLSLRVSYELDREKELL 470
NL R +E K LL
Sbjct: 444 NLIERRQFETKENKRLL 460
>gi|393245739|gb|EJD53249.1| hypothetical protein AURDEDRAFT_180799 [Auricularia delicata
TFB-10046 SS5]
Length = 547
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 130/546 (23%), Positives = 223/546 (40%), Gaps = 85/546 (15%)
Query: 8 KHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAF 67
K V +I HFG L A++ LL +G L+ + R L + V+ A+LVL+Q N +
Sbjct: 8 KLCVQIIHEHFGPLTAQIAAVLLHRGRLSMPQLARELGLKSQTVRAAVLVLVQHNILWHA 67
Query: 68 TTEQPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLT 127
T+ + + D + R+RF ++++ + F Q+ E+V LL+HG+L
Sbjct: 68 ETDDRTEVME---------INIDECIARLRFGHYMSLAREIFGQEASEIVAILLDHGKLR 118
Query: 128 LKQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVER-------CPASEPLLMPISEEE 180
L + R S+ + V + + KL+++ +++ CP + L+ +E
Sbjct: 119 LPDILSRLLVSKPKEQAV----YTQMVHKLISSTHLKPSTVLSHICPRDK--LINYEADE 172
Query: 181 GPARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGE 240
+K SAK I E A + R +G K K ++ G
Sbjct: 173 LKKKKTAIISAKDIRE-----------AKDLAVARLRKEEEEAEKIGFKRKAKEALS-GR 220
Query: 241 KRKHDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQA 300
K ++E D V DE V +R N F ++R+ + +D AA V+ A L+A
Sbjct: 221 ASKKQIVEED---VIDED-VYFRVNHSKFNVQIRNNLIVAAAAERYNDAAAVVICATLKA 276
Query: 301 -------TSSAEKKVKTKN---SVP--------LSLSS---------------IYEEVIK 327
T + V T N S+P LS +S + E +
Sbjct: 277 AEAKSSLTDLRSEAVTTNNIMSSIPENHELASGLSYTSSKSSKAPKAPSTANLVKEFIGI 336
Query: 328 SEAGRNMTLDHVRASL---------VQLDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRL 378
A N T V S VQ++++ I + +E+VV +R+G D RI R+
Sbjct: 337 LSAADNPTPAGVAGSFLSTSSSAGKVQVEYDIIHRRLRRRVLEAVVRERFGDDGVRIIRI 396
Query: 379 LSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTGARQS--QFLLWKVN 436
L +G+ ++ I+ KD +L + G + M+++ + R F LW V+
Sbjct: 397 LLATGK-MDDKHIAKVAMKPPKDVRTVLAGMSSAGIIAMQEVPKSADRAPIRTFYLWHVD 455
Query: 437 RQILWKHVLDEMFHAALNLSLRVSYELDREKELLNLPADK-RTGPLQDRYNRIRKVRILL 495
+ +L ++ N+ +R E + + L+ DK G L+D R R +L
Sbjct: 456 LPKTYAVLLRNLYKTLFNIQMRKRAE-EEDNALIRGILDKCERGGLRDESQLTRPEREML 514
Query: 496 ESSQMK 501
Q K
Sbjct: 515 ADWQEK 520
>gi|410171283|ref|XP_003960212.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC3-like
isoform 4 [Homo sapiens]
Length = 411
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 91/433 (21%), Positives = 186/433 (42%), Gaps = 64/433 (14%)
Query: 13 VITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQP 72
++ HFG++V K+ L+R G + + T S +QVK AL VL+Q N V
Sbjct: 12 LLQEHFGEIVEKIGVHLIRTGSQPLRVIAHDTGTSLDQVKKALCVLVQHNLV-------- 63
Query: 73 DGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTL---- 128
+ + +Y +L +R+ +++ + +V+ LL +G+LT+
Sbjct: 64 -SYQVHKRGVVEYEAQCSRVLRMLRYPRYIYTTKTLYSDTGELIVEELLLNGKLTMSAVV 122
Query: 129 KQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEGPARKKGS 188
K++ DR + ++G +D + T V+L H+V+RCP+ +P +E P +
Sbjct: 123 KKVADRLTETMEDGKTMDYAEVSNTFVRLADTHFVQRCPS-----VPTTENSDPGPPPPA 177
Query: 189 KSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGE-KRKHDVL 247
+ V+ + S++ G++ ++S+ GE K K
Sbjct: 178 PTL------------VINEKDMYLVPKLSLIGK-----GKRRRSSDEDAAGEPKAKRPKY 220
Query: 248 ELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQATSSAEKK 307
D + + ++AN + F + R + + V +D ++ ++ ML+ + +
Sbjct: 221 TTDNKEPIPDDGIYWQANLDRFHQHFRDQAIVSAVANRMDQTSSEIVRTMLRMS-----E 275
Query: 308 VKTKNSVPLSLSSIYEEVIKS-EAGRNMT---------------LDHVRAS------LVQ 345
+ T +S P + E+ +S G N++ L+ V S +
Sbjct: 276 ITTSSSAPFTQPLSSNEIFRSLPVGYNISKQVLDQYLTLLADDPLEFVGKSGDSGGGMYV 335
Query: 346 LDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKI 405
++ K + +ESVV +R+G RIFRL+ + + +E ++ D + K+A +
Sbjct: 336 INLHKALASLATATLESVVQERFGSRCARIFRLVLQK-KHIEQKQVEDFAMIPAKEAKDM 394
Query: 406 LYKLWKDGYLLME 418
LYK+ + ++ ++
Sbjct: 395 LYKMLSENFMSLQ 407
>gi|303274164|ref|XP_003056405.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226462489|gb|EEH59781.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 287
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 82/278 (29%), Positives = 136/278 (48%), Gaps = 32/278 (11%)
Query: 261 VYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQATSSAEKKVKTKNSVPLSLSS 320
++R NF F RR +HK C VR +DD ++L +L S E K + + + + +
Sbjct: 10 LWRINFVEFNRRFQHKACSATVRTKVDDETNHLLLLLLDILSPREVKDRGQ-AASIHQAD 68
Query: 321 IYEEVIKSEAGRNMTLDHVRASLV-------------------QLDFEKIIEIAQNEEVE 361
I + KS ++ L +D + +++ + +E+E
Sbjct: 69 ILPMICKSRKCSSIVAKERLKQLCDSTGDLVSCFRDVQGGNNYSVDVNRTMQLIRTKEIE 128
Query: 362 SVVSKRYGRDAYRIFRLLS-KSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKL 420
+++ +R+G A RIFRLL KS LE ++++ + KD ++LYKL K Y+ ++++
Sbjct: 129 AIIRERFGVPACRIFRLLLLKSN--LEQKQVAELAMIPVKDTRELLYKLLKAEYVQIQEV 186
Query: 421 VVTG--ARQSQFLLWKVNRQILWKHVLDEMFHAALNLSLRVSYELDREKELLNL---PAD 475
T A F LW+V+ ++V E+F NL R+ +EL RE+E L+L AD
Sbjct: 187 SRTSDHAPSRTFFLWRVDLARAIENVERELFRTTSNLRSRLLHELARERETLSLLECAAD 246
Query: 476 KRTGPLQ--DRYN--RIRKVRILLESSQMKLDDAILLF 509
K T L R N R+R + LESS +LD+ + LF
Sbjct: 247 KVTVALTPGQRCNLARMRTIGTRLESSLQRLDELLPLF 284
>gi|449667076|ref|XP_002165558.2| PREDICTED: DNA-directed RNA polymerase III subunit RPC3-like [Hydra
magnipapillata]
Length = 611
Score = 88.6 bits (218), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 111/474 (23%), Positives = 198/474 (41%), Gaps = 70/474 (14%)
Query: 10 AVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTT 69
A+ +I +HFGD+ +V LL+ G + +++ ++S ++VK L++LIQ N V
Sbjct: 125 ALQIINDHFGDISEQVVAYLLQNGQRSLKDICDNVKISKDEVKKVLVILIQHNLV----- 179
Query: 70 EQPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTL- 128
F T+Y NI+ R F +++ I + +++ LL +G TL
Sbjct: 180 ----SFNKYKNKFTEYHTELHNIIRRRSFQRYIYIAKLKHGDIGELIIEKLLLNGCDTLS 235
Query: 129 ---KQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEGPARK 185
K++ +R + + E D + + L++AHY+ R L P K
Sbjct: 236 KVAKRVTERLEVDDPEEQRPDQSVVIKKCSDLISAHYLMRYKC---LQYP---------K 283
Query: 186 KGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVT-PGEKRKH 244
+G K K I P + F VG+K K P K++
Sbjct: 284 EGKKETKDIN--------------PNDVFLFP------QGVGKKRKAQTKTDEPMSKKRK 323
Query: 245 DVLELDECGVADEQ----SVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQA 300
E DE +EQ V + NFE R D + A+++
Sbjct: 324 IDSEKDEEAGENEQYEDDGVYWYVNFE---------------RLDQDFNDQLITRAVVER 368
Query: 301 TSSAEKKVKTKNSVPLSLSSIYEEVIKSE--AGRNMTLDHVRASLVQLDFEKIIEIAQNE 358
KK+ + + Y ++ E G D + ++ + +E+
Sbjct: 369 IDQLIKKLPSTPRLDQQEVYQYLSLLSDEKTGGFVSKTDEAAGGMYSVNIQTSLEMICES 428
Query: 359 EVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLME 418
++V +R+G A R+FRLL + RLLE +I + + KD ++LYKL+++ +L ++
Sbjct: 429 VCSTIVMERFGSKACRVFRLLIQK-RLLEQKQIGELAMIPFKDVKELLYKLFEESFLTIQ 487
Query: 419 KLVVTG--ARQSQFLLWKVNRQILWKHVLDEMFHAALNLSLRVSYELDREKELL 470
++ T A F L+ V+ + + +L+ + A NL LR +E++ K LL
Sbjct: 488 EVSKTKDYAPSRSFYLFGVDMPQVSRLLLNRSYQAMGNLMLRRKFEMEENKRLL 541
>gi|402218291|gb|EJT98368.1| hypothetical protein DACRYDRAFT_57600 [Dacryopinax sp. DJM-731 SS1]
Length = 568
Score = 88.6 bits (218), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 116/510 (22%), Positives = 201/510 (39%), Gaps = 86/510 (16%)
Query: 7 TKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQA 66
T V ++ FG ++ LL +G L + R T L V+ L+VLIQ N V
Sbjct: 7 THLCVQILQTFFGGPCYEIGRVLLSRGRLPLPLIARLTRLKPRTVRACLIVLIQHNVVWF 66
Query: 67 FTTEQPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRL 126
++ DG +GP+ +T Y V + + R+RF KF+ I + F + ++V+ +L+HG+L
Sbjct: 67 AESDGEDG--EGPRGDTFYEVNVEEVCMRLRFGKFVEIAADVFGDEAKDIVRCILDHGKL 124
Query: 127 TLKQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEGPARKK 186
L + D + + + + S R T LVT+ Y LMP S R
Sbjct: 125 RLPAVLDLLEVNAPKSTI----SHRSTFHALVTSRY----------LMPTS------RLL 164
Query: 187 GSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDV-GEKEKNSNN-----VTPGE 240
+ KI E IE++ ++ +P + S+ VE + E+E + +T G
Sbjct: 165 HTSPKDKIIAWEEIEKRKLK-EIPSAKVLRSIRDGVEDRLRTEREGQTTGLKRKPITTGG 223
Query: 241 KRKHDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQA 300
K + DE ++ V +R N+E F LR + V+SA+L+A
Sbjct: 224 KGRKKPRRDDEDEEVVDEDVWFRVNYERFNVHLRDTLLATGAAERYNPSFGAVMSALLEA 283
Query: 301 TS-------------------------------------------SAEKKVKTKNSVP-- 315
SA K+ + ++ P
Sbjct: 284 AMSVPNTHPRLSDVRSSPVSTPTLATFLQGGSSFGSNATSRAPLLSAGLKLPSSSTAPTS 343
Query: 316 ------LSLSSIYEEVIKSEAG---RNMTLDHVRASLVQLDFEKIIEIAQNEEVESVVSK 366
L+LS+ +AG VQ++FE I E + VE V +
Sbjct: 344 ALKQYLLALSASDNPTPAGQAGAFTSRFAGGGGGEGKVQVEFETIAERMRRRLVEGYVRE 403
Query: 367 RYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTGAR 426
R+G A R+ +L G +++ +I+ + ++ L L +L ++++ T R
Sbjct: 404 RWGDGAGRVLGVL-WGGTMMDERQIAKISLMQASVVRAALTALQSANFLSLQQVPKTPQR 462
Query: 427 QS--QFLLWKVNRQILWKHVLDEMFHAALN 454
+ F LW + Q + +L ++ N
Sbjct: 463 EPARSFFLWYCDPQNCYTSLLSTLYGTIAN 492
>gi|392596049|gb|EIW85372.1| hypothetical protein CONPUDRAFT_118168 [Coniophora puteana
RWD-64-598 SS2]
Length = 538
Score = 88.2 bits (217), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 119/497 (23%), Positives = 215/497 (43%), Gaps = 75/497 (15%)
Query: 8 KHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDE--QVKNALLVLIQQNCVQ 65
K V +I +HFG L A + LL +G L+ + R+T+ S + V A+L LIQ N +
Sbjct: 8 KLCVQIIDSHFGPLTASLVSTLLARGRLSLPQLIRFTDPSPKPRSVHAAVLSLIQHNLL- 66
Query: 66 AFTTEQPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGR 125
+ + G + + NT F+ + R+RF +F+ + F E+VQ +L+HG+
Sbjct: 67 -WHSVDDAGGQEMLEVNT-----FECFM-RLRFGRFVALADDLFGSAGTEIVQLVLDHGK 119
Query: 126 LTLKQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPAS--------EPLLMPIS 177
+ + S +G+ + + ++TL KLV Y++ P++ + L+ +
Sbjct: 120 VRPPDII----SQLSQGDKKNTSAYKQTLHKLVDRSYLK--PSTVLSHQSPHDKLIAYDA 173
Query: 178 EEEGPARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVT 237
EE R G +AK++ E ++ EA L E VG K K +N+T
Sbjct: 174 EERR--RIAGFPTAKQLREA----RETAEARLKRE-------EEEAERVGFKRKAKDNIT 220
Query: 238 PGEKRKHDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAM 297
++ V DE + D+ V +R N++ F +R++ VR ++ AA V+ A
Sbjct: 221 QRSSKRKAV---DEDALDDD--VYFRVNYDKFNIHIRNQLIETLVRERFNESAACVVHAT 275
Query: 298 LQATSSAEKKVKTKNSVPLSLSSIYEEV---------IKSEAGRNMTLDHVRASL----- 343
L++T +K + S P S +SI + + S + ++ + L
Sbjct: 276 LKSTELKQKSMTDVRSDPTSTASIAMHIPDDAPLSAGLASSSKKSNPASLAKEFLTLMSS 335
Query: 344 ----------------VQLDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLE 387
V ++FE I + +E V +++ + RI RLL G++ E
Sbjct: 336 SANPSAASFVSMGENKVYVEFETISRRMKRHVLEEVTREKHKDEGVRILRLLLDVGKMDE 395
Query: 388 TDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTGARQS--QFLLWKVNRQILWKHVL 445
+I+ + KD +L L D + +++ + R F LW V+ + +L
Sbjct: 396 K-QIAKVAMLPSKDLRPLLSALSSDFIISTQEVPRSADRNPTRTFYLWYVDLNRAYTSIL 454
Query: 446 DEMFHAALNLSLRVSYE 462
++ N+ LR S E
Sbjct: 455 RSLYKTLFNIGLRRSAE 471
>gi|13325210|gb|AAH04424.1| POLR3C protein [Homo sapiens]
gi|325463117|gb|ADZ15329.1| polymerase (RNA) III (DNA directed) polypeptide C (62kD) [synthetic
construct]
Length = 411
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 90/433 (20%), Positives = 186/433 (42%), Gaps = 64/433 (14%)
Query: 13 VITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQP 72
++ HFG++V K+ L+R G + + T S +QVK AL VL+Q N V
Sbjct: 12 LLQEHFGEIVEKIGVHLIRTGSQPLRVIAHDTGTSLDQVKKALCVLVQHNLV-------- 63
Query: 73 DGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTL---- 128
+ + +Y +L +R+ +++ + +V+ LL +G+LT+
Sbjct: 64 -SYQVHKRGVVEYEAQCSRVLRMLRYPRYIYTTKTLYSDTGELIVEELLLNGKLTMSAVV 122
Query: 129 KQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEGPARKKGS 188
K++ DR + ++G +D + T V+L H+V+RCP+ +P +E P +
Sbjct: 123 KKVADRLTETMEDGKTMDYAEVSNTFVRLADTHFVQRCPS-----VPTTENSDPGPPPPA 177
Query: 189 KSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGE-KRKHDVL 247
+ V+ + S++ G++ ++S+ GE K K
Sbjct: 178 PTL------------VINEKDMYLVPKLSLIGK-----GKRRRSSDEDAAGEPKAKRPKY 220
Query: 248 ELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQATSSAEKK 307
D + + ++AN + F + R + + V +D ++ ++ ML+ + +
Sbjct: 221 TTDNKEPIPDDGIYWQANLDRFHQHFRDQAIVSAVANRMDQTSSEIVRTMLRMS-----E 275
Query: 308 VKTKNSVPLSLSSIYEEVIKS-EAGRNMT---------------LDHVRAS------LVQ 345
+ T +S P + E+ +S G N++ L+ V S +
Sbjct: 276 ITTSSSAPFTQPLSSNEIFRSLPVGYNISKQVLDQYLTLLADDPLEFVGKSGDSGGGMYV 335
Query: 346 LDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKI 405
++ K + ++SVV +R+G RIFRL+ + + +E ++ D + K+A +
Sbjct: 336 INLHKALASLATATLKSVVQERFGSRCARIFRLVLQK-KHIEQKQVEDFAMIPAKEAKDM 394
Query: 406 LYKLWKDGYLLME 418
LYK+ + ++ ++
Sbjct: 395 LYKMLSENFMSLQ 407
>gi|403412256|emb|CCL98956.1| predicted protein [Fibroporia radiculosa]
Length = 519
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 123/551 (22%), Positives = 231/551 (41%), Gaps = 103/551 (18%)
Query: 13 VITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQP 72
+I +HFG L A V LL +G L ++ R++ L V+ A+LVL+Q N + Q
Sbjct: 13 IIRSHFGSLTAIVASVLLTRGRLPLSHLIRFSGLKPRTVRAAILVLVQHNLLW---HAQS 69
Query: 73 DGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTLKQMF 132
D + + N +L R+RF +++ Q F + +++Q +L+HG++ +
Sbjct: 70 DDDGEVLEVNITECLL------RLRFGRYVHQAEQLFGKAGADIIQLILDHGKMRPPDLI 123
Query: 133 DRAKSSEKEGNLVDLDSL-RETLVKLVTAHYVERCPASEPLLMPISEEEGPARKKGSKSA 191
R + V+ ++ + L KL+ + Y++ P++ LL S + + + + A
Sbjct: 124 SRLSVYDP----VEAPAMYSQMLRKLIGSSYLK--PST--LLSHFSPRDKRIKYEAEEKA 175
Query: 192 KKIGEPETIE-QQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGEKRKHDVLELD 250
K G P E +Q E A ++ + +E+ + +D
Sbjct: 176 KISGFPTAKELRQAKETA--------------QARLKREEEAPEQTS-----------MD 210
Query: 251 ECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRA-HLDDGAANVLSAMLQATSSAEKKVK 309
E +R N E F +R+ I+H ++ VL A+L++T + +K++
Sbjct: 211 ET--------YFRINCEKFNIHIRN-NLIEHAAVERFNETTGLVLRAVLKSTEAKQKQLA 261
Query: 310 TKNSVPLSLSSIY----EEV-------------------IK------------SEAGRNM 334
S P S++++ EEV IK + AGR
Sbjct: 262 DTRSDPTSIANVAMQLPEEVDLSTGLILQLSKKPSAAALIKDYLGLLASADNPTPAGRAA 321
Query: 335 TLDHVRASLVQLDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDT 394
+ + S VQ++F+ I Q +E++ +R+G D RI RLL +G++ E +IS
Sbjct: 322 SFVSMNGSKVQVEFDIIARRLQRRVLEAITRERHGDDGVRIVRLLLDTGKMDEK-QISKI 380
Query: 395 TFVEKKDAPKILYKLWKDGYLLMEKLVVTGARQS--QFLLWKVNRQILWKHVLDEMFHAA 452
+ KD +L L D + ++++ + R F LW V+ Q +LD ++
Sbjct: 381 GMMANKDVRPLLSALSADSLISLQEVPKSADRNPTRTFYLWYVDLQKARSVLLDNLYKTL 440
Query: 453 LNLSLRVSYELDREKELLNLPADKRTGPLQDRYNRIRKV-----------RILLESSQMK 501
N+ R E + L +R+ QD + ++ R L +M+
Sbjct: 441 YNILFRKQAEEEESNVKAVLEKRQRSDVSQDEERLLTRIERETLVDWEKRRDKLTVLEMR 500
Query: 502 LDDAILLFHDF 512
+++A+ + HD
Sbjct: 501 IEEAVFIIHDL 511
>gi|449268623|gb|EMC79476.1| DNA-directed RNA polymerase III subunit RPC3 [Columba livia]
Length = 533
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 115/502 (22%), Positives = 204/502 (40%), Gaps = 75/502 (14%)
Query: 2 LTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQ 61
+T+ K ++ HFG++V K+ LLR G + + T L +QVK AL VLIQ
Sbjct: 1 MTQAEIKLCSLLLHEHFGEIVEKIGTQLLRAGGQALRGIAGGTGLLLDQVKKALCVLIQH 60
Query: 62 NCVQAFTTEQPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLL 121
N T +P + +Y IL +R+ +++ + +V+ LL
Sbjct: 61 N----LATFRPR------RGGVEYEAQCGRILRILRYPRYIYTAKTLYGDTGELIVEELL 110
Query: 122 EHGRLTL----KQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPIS 177
+G+LT+ +++ DR + ++G +D + T V+LV H+V+RCP L+P
Sbjct: 111 LNGQLTMSAVVRKVADRLTETMEDGKTMDYADVSSTFVRLVDTHFVQRCP-----LVP-- 163
Query: 178 EEEGPARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVT 237
EGP + + V R S+V K + S
Sbjct: 164 --EGPQSPEVPPPPAPTLLSSDKDMYTVP--------RLSLVGK------GKRRRSCEEE 207
Query: 238 PGEKRKHDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAM 297
GE R + + G + E + + + F + R + + V +D ++ ++ M
Sbjct: 208 DGEPRAK---KQKQEGESSEVPGRLKPHIDRFHQHFRDQAIVSAVANRMDQTSSEIVRTM 264
Query: 298 LQATSSAEKKVKTKNSVPLSLSSIYEEVIKS-EAGRNM---TLDHVRASLVQLDFEKIIE 353
L+ + +V T + P + E+ +S AG N+ LD A L E + +
Sbjct: 265 LRMS-----EVTTSSGAPYTQPLSSNEIFRSLPAGYNIVKQVLDQYLALLADDPLEFVGK 319
Query: 354 IAQNEEVESVVS-----------------------KRYGRDAYRIFRLLSKSGRLLETDK 390
+ VS +R+G RIFRLL + + LE +
Sbjct: 320 SGDSGGGMYTVSIFWGRFFKTFAPFPLHVTGVPAPRRFGSRCARIFRLLLRK-KHLEQKQ 378
Query: 391 ISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTG--ARQSQFLLWKVNRQILWKHVLDEM 448
+ D + K+A ++LYK+ + ++ ++++ T A F L+ VN + +L
Sbjct: 379 VEDFAMIPAKEAKEMLYKMLSESFVSLQEIPKTPDHAPSRTFYLYTVNVPAAARMLLHRC 438
Query: 449 FHAALNLSLRVSYELDREKELL 470
+ + NL R +E K LL
Sbjct: 439 YKSVANLMERRQFETKENKRLL 460
>gi|321455740|gb|EFX66865.1| hypothetical protein DAPPUDRAFT_218866 [Daphnia pulex]
Length = 518
Score = 85.1 bits (209), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 103/484 (21%), Positives = 214/484 (44%), Gaps = 80/484 (16%)
Query: 13 VITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQP 72
++ +++G++V +V LLR+G ++ T LS +VK AL V+IQ N V+ +E+
Sbjct: 16 LLNHYYGEIVGQVGSYLLRRGNRMLNDIPTATGLSIREVKKALAVMIQHNLVKFQASERN 75
Query: 73 DGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTLKQMF 132
+ A +Y ++ N+ +R+ K+L ++ + + L++ LL G+ + +
Sbjct: 76 NNVA-------EYTMIHHNVYCLIRYPKYLYMIKRIYGTSEEILLEILLNLGQASASNVI 128
Query: 133 DRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEGPARKKGSKSAK 192
+ + E N++ +L ++ +L +++ RCP K +++A
Sbjct: 129 FHSANRLNEANVLSPSALHQSFQRLAQDNFIIRCP------------------KLAENAT 170
Query: 193 KIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGEKRKHDVLELDEC 252
+ P T+E + E +F+ V NVE + P + + + +
Sbjct: 171 LLKVP-TLEIE--------EKEKFA-VPNVE------------IEPIARMLKE--KATQL 206
Query: 253 GVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQ---ATSSAEKKVK 309
G + +++R N E F LR+ ++ +D A + +L+ +S+ + V
Sbjct: 207 GGHCDSEIIWRVNHERFDIELRNVILVNAAARRVDTTAGELYHLILKLWRESSNPDSPVT 266
Query: 310 TKNSVPLSLSSIYEEVIKSEAGRNMT--LDHV-------RASLV-----------QLDFE 349
T P+S + I + V K+++ + DH A L+ LD+
Sbjct: 267 T----PVSYNVIKDAVRKNDSSPILLEHFDHYLRVLYEDSAGLIDRAGDAGGGQFNLDYS 322
Query: 350 KIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKL 409
K+ E ++S+V +R+G A R+FR L++ + +E D++ + + K+A YKL
Sbjct: 323 KVFENLACASLDSIVLERFGSKALRLFR-LTRIQKFMEQDQMQNVAMIPAKEAKMFTYKL 381
Query: 410 WKDGYLLMEKL---VVTGARQSQFLLWKVNRQILWKHVLDEMFHAALNLSLRVSYELDRE 466
+ +L +++L A F+L+ V + + L+ + N +R ++L
Sbjct: 382 LEHNFLQIKELKKGTSNFAPVKSFILYHVELPQVVRTTLEASYKGLFNAMVRQMHDLTEN 441
Query: 467 KELL 470
+ LL
Sbjct: 442 QRLL 445
>gi|428185684|gb|EKX54536.1| DNA-directed RNA polymerase III subunit RPC3 [Guillardia theta
CCMP2712]
Length = 531
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 118/485 (24%), Positives = 217/485 (44%), Gaps = 58/485 (11%)
Query: 10 AVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTT 69
A+ V+ +HFG VC L+R+ T + ++ TEL ++N LLVLIQ N V + T
Sbjct: 16 ALQVVKDHFGAASESVCAALIRRSQRTLKELQADTELGSAALRNNLLVLIQHNLV-SVTV 74
Query: 70 EQPDGFADGPKANTQYVVLFDNILHRVRFAKFLTIL----SQEFDQQCVELVQGLLEHGR 125
+ + +Y + R+R+ KF T + S E + ++++ +LEHGR
Sbjct: 75 DSTSAARE-----CRYHFEVEEASLRLRYPKFCTHIKSQASMEHARVASQVMEAILEHGR 129
Query: 126 LTLKQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYV-------ERCPASEPLLMPISE 178
++ Q+ + K ++E + D L + L+ Y+ ER L P +
Sbjct: 130 ASMAQIIEHCKYGDEE---ISEDKLVKAGNLLIQEKYIVRAQSNMERADTPAVLFSPTQK 186
Query: 179 EEGPARKKGSKSAKKIGEPETIEQQVVEAALPME---AMRFSVVTNVESDVGEKEKNSNN 235
+ G RK GS ++ E + ++ A +P++ A++ S+ + G + +
Sbjct: 187 KTGK-RKAGSAGEER--ESKLVKLDNGAAGIPLKEDGALKESI-----DNEGSTWRVNTP 238
Query: 236 VTPGEKRKHDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDG--AANV 293
+ R + +L E + + + R +R +R++ A+L +G +
Sbjct: 239 AFLWDFRTAAIAQLMEDRFGPQTASLMRL----LLRTIRNRALQP---ANLANGFIPSAS 291
Query: 294 LSAMLQATSSAEKK---VKTKNSVPLSLSSI-----YEEVIKSEAGRNMTLDHVRASLVQ 345
+ AML A+ + V+T + LS++ ++ V K G + S +
Sbjct: 292 VDAMLDASEGRNEDLNVVRTWEVLSEQLSALCQDPAFKSVTKLMGGGS------EGSTFK 345
Query: 346 LDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKI 405
D ++ + + +ES+V K++ RIFRLL + + LE+ + D + V KKDA I
Sbjct: 346 PDISLLMMELRQQILESIVEKKFTARGRRIFRLLLER-KYLESKTVWDLSMVPKKDANDI 404
Query: 406 LYKLWKDGYLLMEKLVVTGARQSQ--FLLWKVNRQILWKHVLDEMFHAALNLSLRVSYEL 463
L K+ K ++ ++++ T +Q F LW V+ + V DEM+ +N L E
Sbjct: 405 LCKMLKAQFVRLQEVPRTIDHNTQRTFFLWYVDLPKVCSIVEDEMYR-TINFLLLKREEK 463
Query: 464 DREKE 468
RE E
Sbjct: 464 KRECE 468
>gi|388580679|gb|EIM20992.1| hypothetical protein WALSEDRAFT_39160 [Wallemia sebi CBS 633.66]
Length = 554
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 114/493 (23%), Positives = 211/493 (42%), Gaps = 92/493 (18%)
Query: 1 MLTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQ 60
M+T+ ++ ++ N FG +VAKV + +L G L + RY E+ +QV+ ALL+LIQ
Sbjct: 1 MVTKEASRLCGIILENDFGAVVAKVGQTVLEYGRLPLPLISRYAEIKAKQVRAALLILIQ 60
Query: 61 QNCVQAFTTEQPDGFADGPKANTQYVVLFDNILHRVRFAKFLTI----LSQEFDQQCV-E 115
NC+ T+ + F D IL R+RF +++ + + +C E
Sbjct: 61 HNCMWHCQTDNDEFFETNA----------DEILARIRFGRYIRYAIDSYKDKLESRCAGE 110
Query: 116 LVQGLLEHGRLTLKQMFDRAKSSEKEGNLVDLDSLRETLVKLV-TAHYVERCP-----AS 169
++ +L +G+L +F+R + +D ++++ LV+ + TA + + P
Sbjct: 111 MITTVLLNGKLRSGDIFERMPAD------IDETTMKKVLVQFLNTAAFTKSTPIMHVSPR 164
Query: 170 EPLLMPISEEEGPARKK----GSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESD 225
+ L+ E + KK G K KKI E + Q + L +E R V+ + +
Sbjct: 165 DKTLLYEKEIKDTTYKKSDILGPKDIKKIKE---LAQARLLQELQVE--RGEVLED-GTR 218
Query: 226 VGEKEKNSNNVTPGEKRKHDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAH 285
G K K S++ KR DV+ DE + +R N+E + RLR++
Sbjct: 219 AGMKRKKSSS-----KRGEDVITFDE-------NAYFRVNYEHYNVRLRNRLIAAEAAKR 266
Query: 286 LDDGAANVLSAMLQATSSAEKKVKT-------------------------KNSVPLS--- 317
++ + ++ A L+AT K + K + LS
Sbjct: 267 WNEQSGFIMEAFLRATEETRKDTQNHVHDTISELVAIHQVAKYIPQENTLKKGIVLSNKE 326
Query: 318 -----LSSIYEEVIKSE-----AGRNMTLDHVRASL--VQLDFEKIIEIAQNEEVESVVS 365
L + Y +++ S+ AG + S + +E + + V+S+V
Sbjct: 327 NNVQKLVAEYCQILSSQDFPGPAGASTRFLQKAGSSKEYHVCYETVCARIKRSLVDSLVK 386
Query: 366 KRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTGA 425
+++G +A RI ++ + G+ LE IS + K+ + + KL G L ++++ +
Sbjct: 387 EQFGDEAARIINIVLEKGK-LEEKHISTIGLLSMKETRETIGKLQTSGLLQLQEVPKSAD 445
Query: 426 R--QSQFLLWKVN 436
R F LW V+
Sbjct: 446 RAVHRTFYLWYVD 458
>gi|291241158|ref|XP_002740482.1| PREDICTED: polymerase (RNA) III (DNA directed) polypeptide C
(62kD)-like [Saccoglossus kowalevskii]
Length = 530
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 103/488 (21%), Positives = 198/488 (40%), Gaps = 78/488 (15%)
Query: 17 HFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQPDGFA 76
++G++V KV L++ G + + T L +QV+ AL VLI N + F
Sbjct: 16 NYGEIVEKVGSYLIKYGLKALRAIALDTNLKLDQVRKALCVLITHNMAK---------FT 66
Query: 77 DGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTLKQMFDRAK 136
+ Y V +L R+ +++ + + +V+ +L++G+L + ++ +
Sbjct: 67 STKRGIIYYQVSVKTVLLLSRYPRYIYSVKTLYGDAGELIVEEILQNGQLLMSKVVRKVT 126
Query: 137 SSEKEG---NLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEGPARKKGSKSAKK 193
E V+ +R+ + LV+ H+++R
Sbjct: 127 ERLNEALEDRTVEESFVRDKFIDLVSTHFLQRV--------------------------- 159
Query: 194 IGEPETIEQQVVEAALPMEA---MRFSVVTNVESDVGEKEKNSNNVTPGEKRKHDVLELD 250
+ P I+ V E+ +E + +E + K + S + G KR + D
Sbjct: 160 VNPPSDIDSTVTESETAIEEEDLYKIPEAMKIEGCISRKRRRSEDEDRGTKR----IRTD 215
Query: 251 ECGVAD------EQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQAT--S 302
D + V + NF+ F + LR + ID V +D + ++ ML+ + +
Sbjct: 216 STASEDPSESFPDDGVYWHTNFDRFHQHLRDQAIIDAVSRRVDKVSREIVRTMLRMSELT 275
Query: 303 SAEKKVKTKNSVPLSLSSIYEEVIKSEAGRNMTLDHVRASLV--QLDF------------ 348
+ K TK P+S I+ + + TLD L Q+DF
Sbjct: 276 TDPKATLTK---PMSSHEIFHALSRELNIPRPTLDQYLKLLADDQIDFINKTGESGGGIY 332
Query: 349 ----EKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPK 404
K I+ +ESVV +R+G YRIFRLL LE ++ + + K+A +
Sbjct: 333 VINIYKAIKSLCIAHIESVVQERFGSKCYRIFRLLLLKQH-LEQKQVEEFAMIPAKEAKE 391
Query: 405 ILYKLWKDGYLLMEKLVVTG--ARQSQFLLWKVNRQILWKHVLDEMFHAALNLSLRVSYE 462
+LY+++ + ++ ++++ T A F L+ VN + + +L+ + NL R ++
Sbjct: 392 LLYQMFSEHFVSVQEIPRTPDHAPSRTFYLFSVNLNQVCRMLLERCYKTNANLIARREHD 451
Query: 463 LDREKELL 470
+ LL
Sbjct: 452 TYENRRLL 459
>gi|299753734|ref|XP_001833454.2| hypothetical protein CC1G_05154 [Coprinopsis cinerea okayama7#130]
gi|298410438|gb|EAU88388.2| hypothetical protein CC1G_05154 [Coprinopsis cinerea okayama7#130]
Length = 505
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 106/453 (23%), Positives = 188/453 (41%), Gaps = 61/453 (13%)
Query: 42 RYTELSDEQVKNALLVLIQQNCVQAFTTEQPDGFADGPKANTQYVVLFDNILHRVRFAKF 101
RY+ L V+ +LVLIQ N V +E Y V D L R+R+ ++
Sbjct: 6 RYSGLRPRTVRGCILVLIQHNIVWHVQSE---------GEQEMYEVNLDECLMRLRYGRY 56
Query: 102 LTILSQEFDQQCVELVQGLLEHGRLTLKQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAH 161
+ + F Q ++VQ +++HG+L +F E + L ++ L KLV+
Sbjct: 57 IFQAEKLFGQAGADIVQIIMDHGKLRPPDIFALLHVHESKA----LAQHKQALYKLVSGS 112
Query: 162 YVERCPASEPLLMPISEEEGPARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTN 221
Y++ AS P +S + + + + K +G P +Q+ EA E R +
Sbjct: 113 YLK---ASTP-RSHVSPRDRLIQYEIEEKKKIVGFPTA--KQLREAKEVAEG-RLKREDD 165
Query: 222 VESDVGEKEKNSNNVTPGEKRKHDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDH 281
+G K K + T K LE +E V DE V +R N E F +R++ ++
Sbjct: 166 ESEKIGLKRK-AKEQTGHRSSKKKALE-EETVVDDE--VFFRVNCERFNVHIRNEIIVNA 221
Query: 282 VRAHLDDGAANVLSAMLQATSSAEKKVKTKNSVPLSLSSI-------------------- 321
+ + A +V+ A ++AT A + S P+S+S++
Sbjct: 222 AKDRYNSQAGSVMQAAIKATEGANPSLSDARSDPVSVSNVIMLLTDDRELSSGLVYSSRK 281
Query: 322 ---------YEEVIK-----SEAGRNMTLDHVRASLVQLDFEKIIEIAQNEEVESVVSKR 367
Y ++ + AG+ S VQ+D+E I + +E++ ++
Sbjct: 282 VPLATCVKDYVGLLAAADNPTPAGKAGAFLSFGGSKVQVDYETISRRLRRRLLEAMAQEK 341
Query: 368 YGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTGARQ 427
+G + RI RLL +G++ E +IS + KD +L L D + +++ + R
Sbjct: 342 HGPEGVRIIRLLLDTGKMDEK-QISKVVLMASKDVRPLLAALSADSLVSTQEVPKSADRN 400
Query: 428 S--QFLLWKVNRQILWKHVLDEMFHAALNLSLR 458
F LW V+ + +L + N+S R
Sbjct: 401 PTRTFYLWYVDLYKAYSSLLGNAYKTLYNISAR 433
>gi|405945676|gb|EKC17433.1| DNA-directed RNA polymerase III subunit RPC3 [Crassostrea gigas]
Length = 487
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 104/468 (22%), Positives = 192/468 (41%), Gaps = 73/468 (15%)
Query: 13 VITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQP 72
++ FG+ V+ V + LL+K P + T L EQVK L +LIQQN V
Sbjct: 12 LLFQQFGEQVSVVGKYLLQKSPSPLHLISSETHLDTEQVKKILCILIQQNIVT------- 64
Query: 73 DGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTLK--- 129
F + +Y + IL+R+ F K++ + L++ +L+ G++ +
Sbjct: 65 --FGQHKRGFIEYSIRTSEILNRLWFPKYIYCAKTLYGDAAELLLEDVLQRGQVQMSKVI 122
Query: 130 ----QMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEGPARK 185
Q F+ A + + + + + + LV H+++RC L PI
Sbjct: 123 EVVMQRFNEALETSGKQKISE-SFVVDKFSNLVRTHFLQRC------LDPIK-------- 167
Query: 186 KGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGEKRKHD 245
S+S K +G + E++ + LP D+ K K S++ P KR
Sbjct: 168 --SESNKVVGLEVSGEEETL-YRLP--------------DLSRKRKKSHDDGPPAKRSKS 210
Query: 246 VLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQATSSAE 305
+E + + + +R N E F + R + + + + +D A VL AML+ +
Sbjct: 211 EVEGERPADDEGDGIFWRVNNERFHQMFRDQAIVQAISSKIDRSAGEVLRAMLRVSEVKT 270
Query: 306 KKVKTKNSVPLSLSSIYEEVIKSEAGRNMTLDHVRASLVQLDFEKIIEIAQNEEVESVVS 365
+ T + P+S++ I+ + K R + ++ SL+ D + +
Sbjct: 271 AGMATVTT-PISVTEIFNALPKDLMARPLLETYL--SLICDDSTNFLSKVGDS------- 320
Query: 366 KRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTG- 424
G Y I +LS I D + K+A +LY L+ + ++ ++ T
Sbjct: 321 ---GGGMYSI-SILS---------VIEDFVMISAKEAKDLLYTLFSENFITTTEISKTPD 367
Query: 425 -ARQSQFLLWKVNRQILWKHVLDEMFHAALNLSLRVSYELDREKELLN 471
A F L+ VN Q + VL+ + A N ++ E++ + LL+
Sbjct: 368 HAPSRTFFLFTVNIQHVASMVLNRCYKALYNAMVKKETEVNEHRRLLD 415
>gi|301620366|ref|XP_002939548.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC3 [Xenopus
(Silurana) tropicalis]
Length = 471
Score = 82.0 bits (201), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 104/451 (23%), Positives = 187/451 (41%), Gaps = 72/451 (15%)
Query: 13 VITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQP 72
++ H+G++V +V L+R G + + T S +QVK AL VLIQ N V ++
Sbjct: 12 LLQEHYGEIVDRVGTFLIRTGNQPLRVIANETGTSLDQVKKALCVLIQHNLVTYQLNKR- 70
Query: 73 DGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTL---- 128
GF + Y D L +R+ +++ + +V+ LL +G++TL
Sbjct: 71 -GFVE-------YKAHVDRFLRILRYPRYIYTAKTLYGDTGELIVEELLLNGKMTLSAAV 122
Query: 129 KQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEGPARKKGS 188
K++ DR + + ++ + T L H+V+RCP +
Sbjct: 123 KKVADRLTETMEGNQSMEYSEVSATFTHLADTHFVQRCPTVQ-----------------E 165
Query: 189 KSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVE-SDVGEKEKNSNNVTPGEKRKHDVL 247
K A + G P + L M +V + + G++ ++S++ G + K
Sbjct: 166 KDATE-GRPP------LAPTLQMNEKEMYIVPKLNMTGRGKRRRSSDDDDGGSQAKRPKK 218
Query: 248 ELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQATSSAEKK 307
E ++ + + V ++ N E F + R + I V +D ++ ++ ML+ + +
Sbjct: 219 EAED---SQDDGVYWQVNTERFHQHFRDQAIISAVSNKMDQTSSEIVRTMLRMS-----E 270
Query: 308 VKTKNSV----PLSLSSIYEEVIKSEAGRNMTLDHVRASLVQLDFEKIIEIAQNEEVESV 363
V T +S PLS + I+ + G NM+ + LV + +I ES
Sbjct: 271 VTTSSSAAYTQPLSSNEIFRSL---PTGYNMSKQVLDQILVIFCPASLHQIGSCRGAESF 327
Query: 364 VSKRYGRD----------------AYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILY 407
R G D RIFRLL + R LE ++ D V K+A ++LY
Sbjct: 328 SCTRPGGDLCLTPPPLTLCRFGSRCARIFRLLLRK-RHLEQKQVEDFAMVPAKEAKEMLY 386
Query: 408 KLWKDGYLLMEKLVVTG--ARQSQFLLWKVN 436
K+ + ++++ T A F L+ VN
Sbjct: 387 KMLFQNLVSLQEIPKTPDHAPSRTFYLYTVN 417
>gi|355389029|gb|AER62457.1| hypothetical protein [Aegilops longissima]
Length = 153
Score = 82.0 bits (201), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 52/157 (33%), Positives = 78/157 (49%), Gaps = 18/157 (11%)
Query: 241 KRKHDVLELDE--CGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAML 298
+RKH E+DE E V++R NFE FI L+ K C D + L G + +
Sbjct: 1 QRKHRAFEVDEELNSTIAENEVLWRVNFEKFIFCLKKKFCADRKKPKLKVGTHPIWESFF 60
Query: 299 QATSSAEKKVKTKNSVPLSLSSIYEEVIKSEAGRNMTLDHVRASLVQL------------ 346
+A + K NSV S + I E++ + E MT+ ++ L+ L
Sbjct: 61 EANLTD----KDTNSVTSSTNGILEKLGQKEGTAAMTIGDIKPVLLDLQCTTSDGEEFTF 116
Query: 347 DFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSG 383
D K++E NEE+ES+V K+YG++A+ IFRLL G
Sbjct: 117 DLRKMVEACXNEEIESLVKKKYGQEAFTIFRLLVTQG 153
>gi|2228748|gb|AAB63675.1| RNA polymerase III subunit [Homo sapiens]
Length = 533
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 104/499 (20%), Positives = 210/499 (42%), Gaps = 69/499 (13%)
Query: 2 LTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQ 61
+T+ K ++ HFG++V K+ L+R G + + T S +QVK AL VL+Q
Sbjct: 1 MTQAEIKLCSLLLQEHFGEIVEKIGVHLIRTGSQPLRVIAHDTGTSLDQVKKALCVLVQH 60
Query: 62 NCVQAFTTEQPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLL 121
N V + + +Y +L VR+ +++ + +V+ LL
Sbjct: 61 NLV---------SYQVHKRGVVEYEAQCSRVLRIVRYPRYIYTTKTLYSDTGELIVEELL 111
Query: 122 EHGRLTL----KQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPIS 177
+G+LT+ K++ DR + ++G +D + T +L H+V+ P+ +P +
Sbjct: 112 LNGKLTMCTVVKKVADRLTETMEDGKTMDYXEVSNTFXRLADTHFVQXXPS-----VPTT 166
Query: 178 EEEGPARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVT 237
E P + + I E + +P + S++ G++ ++S+
Sbjct: 167 ENSDPGPPPPAPTLV-INEKDMY-------LVP----KLSLIGK-----GKRRRSSDEDA 209
Query: 238 PGEKRKHD--VLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLS 295
GE + D +L++ + R N + F + R + + V +D ++ ++
Sbjct: 210 AGEPKARDQNILQITRXPF-QMMGFIGRPNLDRFRQHFRDQAIVSAVANRMDQTSSEIVR 268
Query: 296 AMLQATSSAEKKVKTKNSVPLSLSSIYEEVIKS-EAGRNMT---------------LDHV 339
ML+ + ++ T +S P + E+ +S G N++ L+ V
Sbjct: 269 TMLRMS-----EITTSSSAPFTQPLFSNEIFRSLPVGYNISKQVLDQYLTLLADDPLEFV 323
Query: 340 RAS------LVQLDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISD 393
S + ++ K + +ESVV +R+G RI RL+ + + +E ++ D
Sbjct: 324 GKSGDSGGGMYVINLHKALRSLATATLESVVQERFGSRCARICRLVLQK-KHIEQKQVED 382
Query: 394 TTFVEKKDAPKILYKLWKDGYLLMEKLVVTG--ARQSQFLLWKVNRQILWKHVLDEMFHA 451
+ ++A +LYK+ ++ ++++ T A F L+ VN + + D + +
Sbjct: 383 FAMI-LQEAKDMLYKMLSGNFMSLQEIPKTPDHAPSRTFYLYTVNILSAARMLFDRCYKS 441
Query: 452 ALNLSLRVSYELDREKELL 470
NL R +E K LL
Sbjct: 442 IANLIERRQFETKENKRLL 460
>gi|270006046|gb|EFA02494.1| hypothetical protein TcasGA2_TC008189 [Tribolium castaneum]
Length = 506
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 103/496 (20%), Positives = 203/496 (40%), Gaps = 101/496 (20%)
Query: 1 MLTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQ 60
M +YG ++ ++ FG +V KV L + G + +K++T+L +VK AL +LI+
Sbjct: 1 MSIQYGRVVSL-ILLERFGPVVEKVGTYLFQYGTVPLLYIKKHTDLPISKVKEALCILIK 59
Query: 61 QNCVQAFTTEQPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGL 120
V FT + + A+ Y + + +L +R+AK++ ++ ++F +C +++ L
Sbjct: 60 YRLV-TFTPNRNENVAN-------YTLQHERVLLMLRYAKYINLIKKKFGTECELIMEEL 111
Query: 121 LEHGRLTLKQM----FDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPI 176
L+ T ++ +R K + V + +LRE + L+ A Y+ R +P
Sbjct: 112 LQRSYWTASELILKVIERLKKDHNKN--VTILALREKIFSLLAAQYLIR--------LPY 161
Query: 177 SEEEGPARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNV 236
S E+ P K ++ P TI+ F + V+S N
Sbjct: 162 SMEDKPVPSLVIKETEQFS-PPTID--------------FKQIALVQS----------NK 196
Query: 237 TPGEKRKHDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSA 296
P + +Q V + NF+ F + +R K ++ D+ A +
Sbjct: 197 APVDS-------------LPDQGVYWTVNFDRFHQDMRDKLIVNAFIKKFDENAGEFVRL 243
Query: 297 MLQATS-SAEKKVKTKNSVPL--------------SLSSIYEEVIK-------------S 328
+LQ + + N VP+ L + +++ +
Sbjct: 244 LLQQMYIRTQPWAEVSNPVPIVEIRDLVRKQATHQHLLAFFDQYVNVLEQDSSKLIRQSG 303
Query: 329 EAGRNMTLDHVRASLVQLDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLET 388
EAG ++ + Q +E VE +V +++ A RIFRL+ KS + +E
Sbjct: 304 EAGGGSFQIFLKETFTQFAWET---------VEQIVLEKFDTKAARIFRLV-KSKQYIEP 353
Query: 389 DKISDTTFVEKKDAPKILYKLWKDGYLLMEKL--VVTGARQSQFLLWKVNRQILWKHVLD 446
D+I + K+A ++ Y+L ++ +L ++ L + F L+ N + + L+
Sbjct: 354 DQIQQLAMIPAKEAKRLSYQLLEENFLQVQDLKKSTSNGPNKSFTLFYTNLDQIVRMTLE 413
Query: 447 EMFHAALNLSLRVSYE 462
+ N+ R ++E
Sbjct: 414 LCYKTLFNIMTRKNHE 429
>gi|321259559|ref|XP_003194500.1| hypothetical protein CGB_E6680C [Cryptococcus gattii WM276]
gi|317460971|gb|ADV22713.1| Hypothetical protein CGB_E6680C [Cryptococcus gattii WM276]
Length = 584
Score = 79.0 bits (193), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 108/507 (21%), Positives = 219/507 (43%), Gaps = 60/507 (11%)
Query: 12 HVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQ 71
++ + FGD+V++V LL +G L + R + LS ALL+L+Q N VQ+
Sbjct: 14 QIVAHSFGDVVSRVASTLLNRGRLPAPTIARLSGLSPSVASAALLILMQHNLVQSNGASV 73
Query: 72 PDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTLKQM 131
+ D QY + + L R+R+ K L I + D +++V+ L+ G+L + +
Sbjct: 74 KETGED-----EQYEFIVEECLLRLRWGKMLAITHERVDFLSMQVVKQLMIFGKLRVPDI 128
Query: 132 FDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEGPARKKGSK-- 189
+ + + + +++ +++ L+ H+++ + P L + ++ R SK
Sbjct: 129 I---SALGGDTDAIRAEAITGSVIALLQNHFLQ---TTAPELQILESDQIARRFAASKRR 182
Query: 190 ----SAKKIGEPETIEQQVVEAALPMEAMRFSV--VTNVESDVGEKEKNSNNVTPGE--- 240
+ I +EAA + M S+ VT V + +KN+ G+
Sbjct: 183 LAQAQGSALLSANDINNCHLEAAHDVRTMNESLRAVTRVLITKPKVDKNAKRRKTGKAVE 242
Query: 241 ----KRKHDV---LELDECGVADEQSVVYRA------NFEGFIRR------LRHKGCIDH 281
+ K DV L D GV ++ +A G + R LR +
Sbjct: 243 ESDYELKQDVHLRLNYDRYGVLMRNDLIVKAAEDRWNKGAGIVMRAVLDASLRDTSLLKD 302
Query: 282 VRAHLDDGAANVLSAMLQATSS---AEKKVKTKNSVP------LSLSSIYEEVIKSEAGR 332
R H G +++S + +++ A + +K+S+P LS+ + +++ S AG
Sbjct: 303 DRTHDPVGINSIISLIPPSSAPILLAGLGLSSKSSIPDLVRAYLSVLAGEDQLTGSGAGA 362
Query: 333 NMTLDHVRASLVQLDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKIS 392
+ + +++FE + + + +V ++ G A R+ ++++S + ET I
Sbjct: 363 FLQREGSTNPGYKVEFEAVCVKMREAMLSDLVREKLGDKAARVLAVVTRSSKAFET-TIR 421
Query: 393 DTTFVEKKDAPKILYKLWKDGYLLMEKLVVTGAR---------QSQFLLWKVNRQILWKH 443
D + KDA IL +L K + +++ T A+ +++ LW V+ +
Sbjct: 422 DCAMLPLKDARYILAELQKLSLVETQEVPKTAAKSRANMPSSSSAEYHLWAVDLSRCYSV 481
Query: 444 VLDEMFHAALNLSLRVSYELDREKELL 470
+L ++ N+ R E+D++K +L
Sbjct: 482 LLSSVYKTMGNILQRRRAEMDKKKVVL 508
>gi|281209832|gb|EFA84000.1| RNA polymerase III subunit [Polysphondylium pallidum PN500]
Length = 853
Score = 75.5 bits (184), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 126/613 (20%), Positives = 249/613 (40%), Gaps = 135/613 (22%)
Query: 8 KHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQ-- 65
K A ++ +FG+ V KV L+ +G T +N+ + TE+ ++V+ L VLIQ N V
Sbjct: 268 KVACDIVKENFGEDVEKVYRLLVTRGKSTIRNMVQGTEMKTKRVRQCLFVLIQHNLVDYE 327
Query: 66 ---AFTTEQPDGFADGPK-ANTQYVVLFDNI------------LHRVRFAKFLTILSQEF 109
++P A P A Q D++ +HR+RF K++ + ++
Sbjct: 328 EYLMPKEKKPGTPAKIPTTAQLQQAPTLDDLSDSLYSANVSYAIHRLRFTKYIVFIREKL 387
Query: 110 DQQCVELVQGLLEHGRLTLKQMFDRAKSSEKE--GNLVD-LD-SLRETLVKLVTAHYVER 165
L++ L+++GRLT++ + +++ + K+ GN D L+ E +LV H++ +
Sbjct: 388 GDAAAILLEELMDNGRLTMEAVVNQSATYTKQRTGNFDDDLNRQFEEVFSQLVVEHFIMK 447
Query: 166 CPAS---------------------------------EPLLMP----------------- 175
P +P +P
Sbjct: 448 APNPKPILGDEDEIKNAAKDAKKASTTLSKQQQQLLHDPFALPSSLLKKTKPADTNIISN 507
Query: 176 ----ISEEEGPARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESD------ 225
I+ EE P RKKG+ +A A+R V + E D
Sbjct: 508 RPVAITPEEDPRRKKGAAGGLASKT-TMKTTSSTKATSKSGAVRKRKVDDDEDDESLPDV 566
Query: 226 --VGEKEK----NSNNVTPGEKRK----HDVLELDECGVA---DEQSVVYRANFEGFIRR 272
V E N ++ P ++R ++V+ +E A +E+ +++R N++ FI
Sbjct: 567 LLVSESAPVDIPNDGDLQPWKRRAVENVYNVVSSEEQNQALQSEEKKILWRINYDQFIIE 626
Query: 273 LRHKGCIDHVRAHLDDGAANVLSAMLQATSSAEKKVKTKNSVPLSLSSIYEEVIKSEAGR 332
+ C + V++ L+ AA + +AM+ + K + N+ SSI+ E I E +
Sbjct: 627 FKLLACYEFVQSKLNHQAALIFNAMVNICKKSIKLNQENNT-----SSIFTEDILKEYNK 681
Query: 333 NMTLDHVRAS---------LVQLDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSG 383
N+ + R L+Q II Q++ S+ G Y++ +
Sbjct: 682 NVVDESDRIDGKILDNYLPLMQATRPSIITRMQSQSKSSLAD---GGGVYQVN--IGNIS 736
Query: 384 RLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTGARQSQFLLWKVNRQILWKH 443
+L+ + + + ++ ++ P+ D + AR F L+ V+ + +
Sbjct: 737 AVLKQKMMMEQSIIKLQEVPR-----SSDHF---------AART--FYLFFVDYPNVSQM 780
Query: 444 VLDEMFHAALNLSLRVSYEL----DREKELLNLPADKRTGPLQDRYNRIRKVRILLESSQ 499
++D+++ A N R+ EL D K++ +P ++ + +++++ +LE+
Sbjct: 781 LIDDIYKAVYNCRERLRSELQPHEDMVKKMETIPEEQLSNDQTKLLRKVQRMTEILETMV 840
Query: 500 MKLDDAILLFHDF 512
M LD+ +L+ F
Sbjct: 841 MNLDNDLLILSSF 853
>gi|405121025|gb|AFR95795.1| hypothetical protein CNAG_02025 [Cryptococcus neoformans var.
grubii H99]
Length = 595
Score = 75.1 bits (183), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 107/515 (20%), Positives = 218/515 (42%), Gaps = 79/515 (15%)
Query: 14 ITNH-FGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQP 72
IT+H FGD+V++V LL +G L + R + LS +ALL+L+Q N VQ+
Sbjct: 15 ITSHAFGDIVSRVASTLLNRGRLPAPTIARLSGLSPPVALSALLILMQHNLVQSNGASAK 74
Query: 73 DGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTLKQMF 132
+ D QY + + L R+R+ + L I + D +++V+ L+ G+L + +
Sbjct: 75 ETGED-----EQYEFIVEECLLRLRWGRMLAITHERVDFLSMQVVKQLMIFGKLRVPDII 129
Query: 133 DRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEE------GPARKK 186
+ + + + +++ +++ L+ H+++ + P L + ++ R+
Sbjct: 130 ---SALGGDADAIRAEAITGSIITLLHNHFLQ---TTAPELQILESDQIARRFAANKRRL 183
Query: 187 GSKSAKKIGEPETIEQQVVEAALPMEAMRFSV--VTNVESDVGEKEKNSNNVTPGEKRKH 244
+ I +EAA + S+ +T + + +KN+ KR+
Sbjct: 184 AQAQGSALLSANDITNCRLEAAHDVHTANESLRAITRILITKPKVDKNT-------KRRK 236
Query: 245 DVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQAT--- 301
++E A +Q V R N++ + +R+ + + GA V+ A+L A+
Sbjct: 237 TGRAIEETDYALKQDVHLRVNYDRYGVLMRNDLIVKAAEDRWNKGAGIVMRAVLDASLRD 296
Query: 302 SSAEKKVKTKNSVPLSLSSIYEEVIKSEA----------GRNMTLDHVRASL-------- 343
+S K +T + P+ ++SI + S A ++ D VR L
Sbjct: 297 TSLLKDDRTHD--PVGINSIISLIPPSSAPILLAGLGLSSKSSIPDLVRTYLSILAGEDQ 354
Query: 344 -------------------VQLDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGR 384
+++FE I + + +V ++ G A R+ ++++S +
Sbjct: 355 LTGAGAGVFLQREGSTNPGYKVEFEAICVKMREAMLSDLVREKLGDKAARVLAVVTRSSK 414
Query: 385 LLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTGARQ---------SQFLLWKV 435
ET I D + KDA IL +L K + +++ T A+ +++ LW V
Sbjct: 415 AFET-TIRDCAMLPLKDARYILAELQKLSLVETQEVPKTAAKSRANMPSSSSAEYHLWAV 473
Query: 436 NRQILWKHVLDEMFHAALNLSLRVSYELDREKELL 470
+ + +L ++ N+ R E+D++K +L
Sbjct: 474 DLSRCYSVLLSSVYKTMGNILQRRRAEMDKKKVVL 508
>gi|449547618|gb|EMD38586.1| hypothetical protein CERSUDRAFT_153553 [Ceriporiopsis subvermispora
B]
Length = 574
Score = 74.7 bits (182), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 128/585 (21%), Positives = 226/585 (38%), Gaps = 114/585 (19%)
Query: 12 HVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQ 71
+I +HFG L V +L +G L ++ R++ L V+ A+LVL+Q N +
Sbjct: 12 QIIRSHFGPLTGAVAGVILVRGRLALPHIVRFSGLKPRTVRAAVLVLVQHNLLW---HSH 68
Query: 72 PDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTLKQM 131
DG + + N + L R+R+ +++ + F + E+VQ +L+HG+L
Sbjct: 69 VDGEGEMLEVNVE------ECLMRLRYGRYVAQAEELFGKAGSEIVQLVLDHGKL----- 117
Query: 132 FDRAKSSEKEGNLVDLDSLR-ETLVKLVTAHYVERCPASEP--------------LLMP- 175
+ E L D ++ E L + ++Y+ P + P L P
Sbjct: 118 ----RPPEIISQLSVYDPIKGEYLARCFGSYYI---PVAAPAIYSQALHKLVDAFYLKPS 170
Query: 176 -ISEEEGP----ARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKE 230
+ + P R + + AK G P + +++ EA EA R +G K
Sbjct: 171 TVLSHQSPRDRQIRYEKEEKAKISGFPTS--KELREAKETAEA-RLKREEEEAEQIGMKR 227
Query: 231 KNSNNVTPGEKRKHDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGA 290
K + KRK + V +R N + F +R+ + ++ A
Sbjct: 228 KAKDQPHRPSKRKAVEE------DVVAEEVYFRVNCDRFNVHVRNDIIVTAAVERFNESA 281
Query: 291 ANVLSAMLQATSSAEKKVKTKNSVPLSLSSI----YEEVIKS------------------ 328
VL A L+AT +K V S P S+++I EEV S
Sbjct: 282 GLVLRAALKATEGKQKSVSDIRSDPTSVANISMQLSEEVDLSAGLALPSSKKPSNMTMLR 341
Query: 329 -------------EAGRNMTLDHVRASLVQLDFEKIIEIAQNEEVESVVSKRYGRDAYRI 375
+GR + S VQ++FE I + +E++ +R+G +A RI
Sbjct: 342 DFLGILASADNPTPSGRAASFISFTGSKVQVEFEIIGRRLRQRVLETIARERHGDEAVRI 401
Query: 376 FRLLSKSGR---------------LLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKL 420
RLL +G+ LL +IS + KD +L L D + ++++
Sbjct: 402 IRLLLDAGKMDEKQASGGAIYKGVLLIAVQISKVGMMANKDVRPLLSALSADTLISLQEV 461
Query: 421 VVTGARQS--QFLLWKVNRQILWKHVLDEMFHAALNLSLRVSYELDREKELLNLPADKRT 478
+ R F LW V+ Q + +L ++ N+ R E + L +R+
Sbjct: 462 PKSADRNPTRTFYLWYVDLQKAYSVLLRNLYKTLYNIVARREAEAEEPTVKAVLEKRQRS 521
Query: 479 GPLQDRYNRIRKV-----------RILLESSQMKLDDAILLFHDF 512
QD + + +V R L Q+++++A+ + D
Sbjct: 522 DVSQDEEHLLTRVEREVLAEWDKKREKLAVLQLRVEEAVFILRDL 566
>gi|452822521|gb|EME29539.1| DNA-directed RNA polymerase III subunit C3 [Galdieria sulphuraria]
Length = 524
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 124/566 (21%), Positives = 229/566 (40%), Gaps = 119/566 (21%)
Query: 13 VITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQP 72
++ HFG++ A++ L G + + + +++S +VK A+ VL+QQN + A+
Sbjct: 10 IVKFHFGEVYAQIFWNLSTYGACGFKELVKLSKVSAGEVKQAVAVLLQQNVIFAYEKGSG 69
Query: 73 DGFADGP---KANTQYVVLFD----NILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGR 125
F + P +LF+ L R+RF +F+ + + + + L Q LLE G
Sbjct: 70 RVFRNKPWKLDGEEGVEILFEAKVEEALLRLRFPRFIQLCREYYGETGEVLCQILLERGL 129
Query: 126 LTLKQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEGPARK 185
L+ + D + +G L + L K++ +V C A +
Sbjct: 130 LSFE---DVIQVGVTQGRLKSSAAADSVLHKMIEEKFV--CLAGYEYY-----------E 173
Query: 186 KGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGEKRKHD 245
K K V++V S G K K S + P R+ D
Sbjct: 174 KNEKD----------------------------VSSVSS--GMKRKRSTDDAPSPAREAD 203
Query: 246 VLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGA---ANVLSAMLQATS 302
+ + + Q +YR + R LRH+ D V + + + A+ AML
Sbjct: 204 MSQRSSETLRFVQLELYRISTSFLNRILRHEAFSDLVVHTVRENSRMVASCFRAMLSLIR 263
Query: 303 SAEKKVKTKNSVPLSLSSIYEEVIKSEAGRN--MTLDHVRASLVQLDFEK---------- 350
++ + + SVP+ +I +E+ + +T+D + +L L ++
Sbjct: 264 KEDECFEGEQSVPVQRDAILDEIRNQMPSSSELVTVDQLNEALNVLQDDRYNFISGIGIS 323
Query: 351 --IIEIAQNEEV------ESVVSKRYGRDAYRIFRLLSKSG-----RLLETDKISDTTFV 397
++EI ++ E ++ KR+G R++RLL G +LLE + TT
Sbjct: 324 SFVVEIRMMRQLLKQRATEHLILKRHGTSGLRVYRLLLDKGALEQRQLLEFAMLPGTTAR 383
Query: 398 EKKDAPKILYKLWKDGYLLMEKL--VVTGARQSQFLLWKVNRQILWKHVLDEMFHAALNL 455
EK LY +++DGY+++ ++ F LW V+ ++ +VL + A LN+
Sbjct: 384 EK------LYAMFRDGYVVVNEIPSSSDYKSSRSFFLWSVDVSNVFTNVLCHAYKATLNM 437
Query: 456 SLR------------------VSYELDR---EKELL---------NLPADKRTGPLQDRY 485
+R VS EL+ ++E+L N+ + L++R
Sbjct: 438 LIRMKNLHVEYSRLLGSNLYCVSEELESVPIQQEILERHISSQSSNMNYSCASLELKERL 497
Query: 486 NRIRKVRILLESSQMKLDDAILLFHD 511
++R+ L E S ++LD I+ D
Sbjct: 498 EKLRQRMALYEVSILRLDKNIMCIRD 523
>gi|348684862|gb|EGZ24677.1| hypothetical protein PHYSODRAFT_487168 [Phytophthora sojae]
Length = 600
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 71/318 (22%), Positives = 132/318 (41%), Gaps = 40/318 (12%)
Query: 232 NSNNVTPGEKRKHDVLELDECGV-ADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGA 290
+ + T GE D D G DE+S+V+R +R LRHK CI +++ A
Sbjct: 286 SGDGTTGGETSGEDAP--DGSGAHTDERSLVWRFGVTQLLRDLRHKACIRFATENINAVA 343
Query: 291 ANVLSAMLQATSSAEKKVKTKNSVPLSLSSIYE-----EVIKSEAGRN--------MTLD 337
+++AMLQ +S E++ S P+S +++ + + EA M +
Sbjct: 344 GVIVAAMLQHSSPREREKDEPTSFPVSARDLFDMESVKKALPPEANNPWRLLLNYIMVMC 403
Query: 338 HVRASLVQ---------------------LDFEKIIEIAQNEEVESVVSKRYGRDAYRIF 376
++ +V + +KI+E Q + + +YG + RI
Sbjct: 404 RDKSGMVMKVAQEAFDPTQTRAGDGGQYVVHMQKIVEFLQQATTHAYIQDKYGVASARIV 463
Query: 377 RLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTGARQS--QFLLWK 434
RLL + R LE I + + DA LY+L+ D L M+++ F W
Sbjct: 464 RLLMEK-RQLEQKTIGELALLPSNDARHRLYELYTDKLLKMQEIPKRADHNPAFTFFCWS 522
Query: 435 VNRQILWKHVLDEMFHAALNLSLRVSYELDREKELLNLPADKRTGPLQDRYNRIRKVRIL 494
V+ + + + + + L R +E + KEL+ D+++++ +
Sbjct: 523 VDVPQMQARITERVQDSLCRLRRRRKFEAEENKELIARSEQLVEANDLDKFDKLSRSLDR 582
Query: 495 LESSQMKLDDAILLFHDF 512
L+ + + LD ++L+ DF
Sbjct: 583 LDRAIIHLDGMLMLYRDF 600
Score = 39.3 bits (90), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 4/84 (4%)
Query: 50 QVKNALLVLIQQNCVQAFTTEQPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEF 109
Q+K ALL L+Q N + P A G Y + L+R+RF KF+ + + F
Sbjct: 2 QIKCALLKLLQHNVLDV----TPVAGARGGAPTVAYNINVQEALYRLRFPKFIELAKETF 57
Query: 110 DQQCVELVQGLLEHGRLTLKQMFD 133
Q +++ +L GR+ + Q +
Sbjct: 58 GVQGEVVMEEMLVQGRVRMDQSLE 81
>gi|134112521|ref|XP_775236.1| hypothetical protein CNBE5090 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50257888|gb|EAL20589.1| hypothetical protein CNBE5090 [Cryptococcus neoformans var.
neoformans B-3501A]
Length = 572
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 101/514 (19%), Positives = 216/514 (42%), Gaps = 74/514 (14%)
Query: 12 HVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQ 71
++ + FGD+V++V LL +G L + R + L+ +ALL+L+Q N VQ+
Sbjct: 14 QIVAHAFGDIVSRVASTLLNRGRLPAPTIARLSGLTPPVALSALLILMQHNLVQSNGASA 73
Query: 72 PDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTLKQM 131
+ D QY + + L R+R+ + L I + D +++V+ L+ G+L + +
Sbjct: 74 KETGED-----EQYEFIVEECLLRLRWGRMLAITHERVDFLAMQVVKQLMIFGKLRVPDI 128
Query: 132 FDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEE------GPARK 185
+ + + +++ +++ L+ H+++ + P L + ++ R+
Sbjct: 129 ISGLGG---DADAIRAEAITGSIIALLQNHFLQ---TTAPELQILESDQIARRFAANKRR 182
Query: 186 KGSKSAKKIGEPETIEQQVVEAALPMEAMRFSV--VTNVESDVGEKEKNSNNVTPGEKRK 243
+ I +EAA + S+ +T V + +KN+ KR+
Sbjct: 183 LAQAQGSALLSANDITNCRLEAAHDVRTANESLRAITRVLITKPKVDKNT-------KRR 235
Query: 244 HDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQAT-- 301
++E +Q V R N++ + +R+ + + GA V+ A+L A+
Sbjct: 236 KGGKAIEESDYVLKQDVHLRVNYDRYGVLMRNDLIVKAAEDRWNKGAGIVMRAVLDASLR 295
Query: 302 -------------------------SSAEK-----KVKTKNSVP------LSLSSIYEEV 325
SSA + +K+S+P LS+ + +++
Sbjct: 296 DTSLLKDDRTHDPVGINSIISLIPPSSAPILLAGLGLSSKSSIPDLVRTYLSILAGEDQL 355
Query: 326 IKSEAGRNMTLDHVRASLVQLDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRL 385
+ AG + + +++FE I + + +V ++ G A R+ ++++S +
Sbjct: 356 TGTGAGVFLQREGSTNPGYKVEFEAICVKMREAMLSDLVREKLGDKAARVLAVVTRSSKA 415
Query: 386 LETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTGARQ---------SQFLLWKVN 436
ET I D + KDA IL +L K + +++ T A+ +++ LW V+
Sbjct: 416 FET-TIRDCAMLPLKDARYILAELQKLSLVETQEVPKTAAKSRANMPSSSSAEYHLWAVD 474
Query: 437 RQILWKHVLDEMFHAALNLSLRVSYELDREKELL 470
+ +L ++ N+ R E+D++K +L
Sbjct: 475 LSRCYSVLLSSVYKTMGNILQRRRAEMDKKKVVL 508
>gi|350417205|ref|XP_003491308.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC3-like
[Bombus impatiens]
Length = 496
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 95/490 (19%), Positives = 201/490 (41%), Gaps = 94/490 (19%)
Query: 8 KHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAF 67
K ++ HFG +V V E L + G ++ T L ++K +L VLI+ V
Sbjct: 7 KLCFSILFEHFGPIVQSVAEDLFKHGARPIGLIRHATHLPITKIKESLCVLIKHGLVTYN 66
Query: 68 TTEQPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLT 127
E+ +Y ++ +N+L +R+ +++ + +C +++ +L +G +T
Sbjct: 67 QAEK----------GMEYSLIVENVLLILRYPRYIFFVKSMCGNECEMILEEVLMNGYIT 116
Query: 128 LKQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEGPARKKG 187
+ AK+ +K +E+ P+ +P+ +E+ K
Sbjct: 117 ASEAI--AKTYKK----------------------IEQSPSDLQPSVPVLKEKFELLVKN 152
Query: 188 SKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGEKRKHDVL 247
+ +G TIE++ + + + + +T K N++
Sbjct: 153 QFLMRSLG---TIEERNEKCNFTLPDLNLAAIT--------KRIEGNDI----------- 190
Query: 248 ELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAA----NVLSAMLQATSS 303
+CG + + ++ NF+ F + R + I + LD+ A +L M T+S
Sbjct: 191 ---DCG---DSKIYWKVNFDRFTQDFRDQIIISAISRRLDENAGVLMRQLLILMYLRTAS 244
Query: 304 AEKKVKTKNSVPLSLSSIYEEVIKSEAGRNMTLDHVRASLVQLDFEKIIEIAQNE----- 358
E T N +PL+ I E V K + + L++ D + ++ +
Sbjct: 245 WED---TSNPIPLT--EIKEAVRKVDCPLLIQYLDQYLRLIEEDSSQFLKRVGDSGGGQY 299
Query: 359 --------------EVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPK 404
+E++V +R+G A RIFRL+ ++ + +E ++I + K+A
Sbjct: 300 SVNMKEAFKQLTWTTLENIVMERFGSKAARIFRLV-RNRKYIEQEQIQQLAMIPAKEAKH 358
Query: 405 ILYKLWKDGYLLMEKLV---VTGARQSQFLLWKVNRQILWKHVLDEMFHAALNLSLRVSY 461
+ Y L ++ YL ++++ V+ A F L+ ++ ++ ++ +HA N+ R Y
Sbjct: 359 LTYTLLQENYLQIQEIKKSGVSAAPIKTFFLFHIDLNLVVHMEVEHCYHALYNIMQRREY 418
Query: 462 ELDREKELLN 471
E K +++
Sbjct: 419 EASSNKRMID 428
>gi|66828367|ref|XP_647538.1| RNA polymerase III subunit [Dictyostelium discoideum AX4]
gi|74859265|sp|Q55FJ5.1|RPC3_DICDI RecName: Full=DNA-directed RNA polymerase III subunit rpc3;
Short=RNA polymerase III subunit C3; AltName:
Full=DNA-directed RNA polymerase III subunit C
gi|60475558|gb|EAL73493.1| RNA polymerase III subunit [Dictyostelium discoideum AX4]
Length = 666
Score = 72.0 bits (175), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 54/205 (26%), Positives = 97/205 (47%), Gaps = 22/205 (10%)
Query: 5 YGTKHAVHVITNHFGDLVAKVCECLLRKGP----LTRQNVKRYTELSDEQVKNALLVLIQ 60
Y K A+ ++ FGD V KV E L+++G + Q++ L+ +++K LLVLIQ
Sbjct: 2 YEQKVAIDIVKESFGDDVTKVFEFLVQRGKSSYKIINQSLSGKGGLTIKRIKQCLLVLIQ 61
Query: 61 QNCVQ------AFTTEQPDGFADGPK--ANTQYVVLFDNILHRVRFAKFLTILSQEFDQQ 112
N V T ++ + G +++ Y + N +HR+RF KF+ + +
Sbjct: 62 HNLVTYEEFLLPLTKDEIEKLVPGEPLPSDSVYEAIIVNAIHRLRFPKFINYIKHSKGDE 121
Query: 113 CVELVQGLLEHGRLTLKQMFDRAKSSEKEGNLVDLDSL----RETLVKLVTAHYVERCPA 168
+++ L++HGRL + + +A ++ D D + +T KL+ ++ R P
Sbjct: 122 AAYILEELIDHGRLPMDLLIKQASQIQRVDTFEDQDDITKRFEDTFTKLIMDQFIMRAPR 181
Query: 169 SEPLLMPISEEEGPARKKGSKSAKK 193
P+S++E SK AKK
Sbjct: 182 PR----PVSDQE--TSNALSKEAKK 200
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 54/258 (20%), Positives = 110/258 (42%), Gaps = 42/258 (16%)
Query: 249 LDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQATSSAEKKV 308
+D+ + DE V++ N+E FI + K C D V + + + +AM++ K+
Sbjct: 369 MDQQRIIDESRVLWTINYEQFIIEFKLKACYDFVTEKNNQQSGLLFNAMVKLC----KRS 424
Query: 309 KTKNSVPLSLSSIYEEVIKSEAGRNM----------------TLDHVRASLV-------- 344
N L+ S +Y E I E R++ + R S+V
Sbjct: 425 IRSNQDSLT-SCVYGENILEEYNRDLDSSKKMDKLQIEKYLSIMQASRPSMVTKMVSKSK 483
Query: 345 ----------QLDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDT 394
Q++ II I + + VES++ +++G + R+F+LL LLE +I++
Sbjct: 484 QSSSSELGAYQVNVGNIIGIIKQKMVESIIKQKFGDNGLRVFKLLLIKN-LLEPKQIAEL 542
Query: 395 TFVEKKDAPKILYKLWKDGYLLMEKLVVTGAR--QSQFLLWKVNRQILWKHVLDEMFHAA 452
+ + +L+ + + + ++++ + F L+ V+ + +++F A
Sbjct: 543 AMIPPNECKALLFNMMQKNIIRLQEIPRSSDHFANRTFYLFFVDLPTIIATFTEDIFKAI 602
Query: 453 LNLSLRVSYELDREKELL 470
N R+ EL+ K+ L
Sbjct: 603 YNTRERLKSELEPHKDAL 620
>gi|449510977|ref|XP_004175526.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase III
subunit RPC3-like, partial [Taeniopygia guttata]
Length = 636
Score = 72.0 bits (175), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 111/495 (22%), Positives = 199/495 (40%), Gaps = 72/495 (14%)
Query: 13 VITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQP 72
++ +FG++V KV LLR GP + + T L +QVK AL VL+Q +
Sbjct: 12 LLRENFGEIVEKVGNSLLRTGPRPLRLLVGDTGLLPDQVKKALCVLLQHGLAR------- 64
Query: 73 DGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTLK--- 129
+A P+ +Y +L +R+ +++ + LV+ LL HG L +
Sbjct: 65 --YAPQPRGPVEYEARSRRVLRLLRYPRYIYTAKTLYGDPGELLVEELLLHGHLPMSAAV 122
Query: 130 -QMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEGPARKKGS 188
++ +R + ++G +D+ + T V+L H+++RCPA L + + AR
Sbjct: 123 ARVAERLTETMEDGKSMDVSEVSATFVRLADTHFIQRCPAPPALPPEVPPD---ARVPPP 179
Query: 189 KSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGEKR-KHDVL 247
A GE + RF V G++ + + GE R K
Sbjct: 180 APA---GE---------------DKDRFLVPRLGLGGKGKRRHSCDEEEEGEHRAKRQKQ 221
Query: 248 ELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQATSSAEKK 307
E + + ++ N E F + R + + V + +D ++ V+ ML+ S
Sbjct: 222 EGGSSEPPPDDGIYWQVNLERFHQHFRDQALVSAVASRMDQTSSEVVRTMLR-MSEVTTA 280
Query: 308 VKTKNSVPLSLSSIYEEVIKSEAGRNMT---LDHVRASLVQLDFEKIIEIAQNEEVESVV 364
++ PLS + I+ + AG N++ LD A L E + + + V
Sbjct: 281 SGASHTQPLSSNEIFRSL---PAGYNISKAVLDQYLALLADDPLEFVGKAGDSGGGTYTV 337
Query: 365 S---------------------------KRYGRDAYRIFRLLSKSGRLLETDKISDTTFV 397
S R+G RIFRLL + + LE ++ D +
Sbjct: 338 SIYNGLSSLWXAQIKDFLPXIPHPPSPLPRFGSRCARIFRLLLRK-KHLEQKQVEDFAMI 396
Query: 398 EKKDAPKILYKLWKDGYLLMEKLVVTG--ARQSQFLLWKVNRQILWKHVLDEMFHAALNL 455
K+A +LY++ + + ++++ T A F L+ VN + +L + + NL
Sbjct: 397 PAKEAKDMLYRMLSENLVALQEIPKTPDHAPSRTFYLYTVNVMAAARMLLHRCYQSVANL 456
Query: 456 SLRVSYELDREKELL 470
R +E+ K LL
Sbjct: 457 MERRHHEMRENKRLL 471
>gi|340373723|ref|XP_003385389.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC3-like
[Amphimedon queenslandica]
Length = 529
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 104/495 (21%), Positives = 209/495 (42%), Gaps = 58/495 (11%)
Query: 2 LTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQ 61
+++Y + ++ FG+LV +V LLR G +++ + + V +L+VLIQ
Sbjct: 1 MSQYQSVVCELILEESFGELVKEVGSYLLRNGGQKLKDLVKGLKKKKSDVIKSLIVLIQH 60
Query: 62 NCVQAFTTEQPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVE-LVQGL 120
+ V + K+ T Y ++ NIL R F ++ + +E + E +++
Sbjct: 61 SLVSCISH----------KSATIYRMMTSNILCRGMFPQY-AVTGRELSGEIGEAIIEDF 109
Query: 121 LEHGRLTLKQMFDRA--KSSEKEGNLVDL---DSLRETLVKLVTAHYVERCPASEPLLMP 175
+ +G + ++ R K S+ ++ +L + ++ V LV ++R +
Sbjct: 110 ILNGHSCMSEVITRVVLKLSDTNQDIKELKLAEDVKNHFVNLVDMRLLQRVALA------ 163
Query: 176 ISEEEGPARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVES-DVGEKEKNSN 234
P+++ G + P+ + +P+E +V + G +
Sbjct: 164 ------PSKELGMTTPSHSLSPQD------KYVIPVELGASDIVAACSARKRGRASPDEG 211
Query: 235 NVTPGEKRKHDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVL 294
+ P +K K D E + + + +V++ +F+ F R + + V +D AA V+
Sbjct: 212 ELPPSKKSKSD--EQGKDPLPPDATVLWYIDFQQFQCHYRDQAIVAGVNNRIDPIAAGVM 269
Query: 295 SAMLQ-ATSSAEKK-----------VKTKNSVP--LSLSSIYEE---VIKSEAGRNMTLD 337
+L +T + ++ K+++P LSL+ E + +E G +
Sbjct: 270 KCLLSLSTQDVDPNSYPIVGPEIFLLRLKDTLPQYLSLTDTDLEQYLTVLTEDGFIEKVG 329
Query: 338 HVRASLVQLDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFV 397
+ ++F+K EI ++E VV +R+ R+FRLL R LE +ISD +
Sbjct: 330 EASSGSYHINFKKCSEILCQSQLELVVRERFNDKHLRLFRLLCLKKR-LEQKQISDMALI 388
Query: 398 EKKDAPKILYKLWKDGYLLMEKLVVTG--ARQSQFLLWKVNRQILWKHVLDEMFHAALNL 455
K A +ILY L + ++ ++++ + A F L+ + + VL + A NL
Sbjct: 389 PNKKAKEILYSLLAENFITLQEVPRSNDYAPSRTFHLFSIELNTTTRIVLQRCYKALGNL 448
Query: 456 SLRVSYELDREKELL 470
E + K LL
Sbjct: 449 MTCRKEEGSKNKRLL 463
>gi|119591840|gb|EAW71434.1| polymerase (RNA) III (DNA directed) polypeptide C (62kD), isoform
CRA_a [Homo sapiens]
Length = 319
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 69/325 (21%), Positives = 139/325 (42%), Gaps = 42/325 (12%)
Query: 17 HFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQPDGFA 76
HFG++V K+ L+R G + + T S +QVK AL VL+Q N V +
Sbjct: 16 HFGEIVEKIGVHLIRTGSQPLRVIAHDTGTSLDQVKKALCVLVQHNLV---------SYQ 66
Query: 77 DGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTL----KQMF 132
+ +Y +L +R+ +++ + +V+ LL +G+LT+ K++
Sbjct: 67 VHKRGVVEYEAQCSRVLRMLRYPRYIYTTKTLYSDTGELIVEELLLNGKLTMSAVVKKVA 126
Query: 133 DRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEGPARKKGSKSAK 192
DR + ++G +D + T V+L H+V+RCP+ +P +E P + +
Sbjct: 127 DRLTETMEDGKTMDYAEVSNTFVRLADTHFVQRCPS-----VPTTENSDPGPPPPAPTL- 180
Query: 193 KIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGE-KRKHDVLELDE 251
V+ + S++ G++ ++S+ GE K K D
Sbjct: 181 -----------VINEKDMYLVPKLSLIGK-----GKRRRSSDEDAAGEPKAKRPKYTTDN 224
Query: 252 CGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQATSSAEKKVKTK 311
+ + ++AN + F + R + + V +D ++ ++ ML+ + ++ T
Sbjct: 225 KEPIPDDGIYWQANLDRFHQHFRDQAIVSAVANRMDQTSSEIVRTMLRMS-----EITTS 279
Query: 312 NSVPLSLSSIYEEVIKS-EAGRNMT 335
+S P + E+ +S G N++
Sbjct: 280 SSAPFTQPLSSNEIFRSLPVGYNIS 304
>gi|328785682|ref|XP_394638.3| PREDICTED: DNA-directed RNA polymerase III subunit RPC3-like [Apis
mellifera]
Length = 496
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 94/496 (18%), Positives = 203/496 (40%), Gaps = 116/496 (23%)
Query: 13 VITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQP 72
++ HFG +V V E L + G ++ T L ++K AL VLI+ V+ TE+
Sbjct: 12 ILFEHFGQIVQCVGEDLFKYGAKPLVLIRHTTHLPVTKIKEALCVLIKHGLVKYRQTEK- 70
Query: 73 DGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTLKQMF 132
+Y+++++ +L+ +R+ K++ + + +++ +L++G +T ++
Sbjct: 71 ---------GIEYILIYERVLNILRYPKYMFFVKTNCGNEAEMMLEQVLKNGYITASEVI 121
Query: 133 DRA-KSSEKEGNLV--DLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEGPARKKGSK 189
+ K E+ ++ + L+E L+ ++ R +EEEG +++
Sbjct: 122 IKTYKRMEQSPCIIQPSIPVLKEKFELLIKYQFLMRSTNK-------NEEEGNSKR---- 170
Query: 190 SAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGEKRKHDVLEL 249
+ LP + D+ K LE
Sbjct: 171 ----------------DFTLP------------DLDLAAISK--------------YLEG 188
Query: 250 DECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANV----LSAMLQATSSAE 305
D C + D+ + + N + F + R + + + LD A + L M T+S E
Sbjct: 189 DNCNLKDK--IYWEINIDRFTQDFRDQIIVSSISKRLDKNAGELMRRLLFLMYLRTASWE 246
Query: 306 KKVKTKNSVPLSL---------------------------SSIYEEVIKSEAGRNMTLDH 338
T N +P + SS + + + G +++
Sbjct: 247 D---TSNPIPFAEIKDAVKKLNYPLLTQHLDQYLRLIEEDSSQFLKRVGDSGGGQYSVN- 302
Query: 339 VRASLVQLDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVE 398
++ + QL + + E++V +R+G A RIFRL+ ++ + +E ++I +
Sbjct: 303 MKEAFNQLAWASL---------ENIVMERFGSKAARIFRLV-RARKYIEQEQIQQLAMIP 352
Query: 399 KKDAPKILYKLWKDGYLLMEKLV---VTGARQSQFLLWKVNRQILWKHVLDEMFHAALNL 455
K+A + Y L ++ YL M+++ V+ A F L+ ++ ++ + ++ +HA N+
Sbjct: 353 AKEAKHLTYTLLQENYLQMQEIKKSGVSAAPIKTFFLFHIDLNLVVRMEIEHCYHALYNI 412
Query: 456 SLRVSYELDREKELLN 471
R YE++ K +++
Sbjct: 413 MQRREYEVNSNKRMID 428
>gi|392574302|gb|EIW67439.1| hypothetical protein TREMEDRAFT_74583 [Tremella mesenterica DSM
1558]
Length = 550
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 98/510 (19%), Positives = 211/510 (41%), Gaps = 80/510 (15%)
Query: 12 HVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQ 71
H++ FG +V+++ L+ +G LT + R + LS ALL+L+Q + VQ+ + E
Sbjct: 14 HLVRQAFGTVVSRIASTLMNRGRLTCPTLARLSALSRSTTMAALLILMQHHLVQS-SGEP 72
Query: 72 PDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTLKQM 131
PD +D +A Y D L R+R+ + L + + E+++ L+ +GRL ++
Sbjct: 73 PD--SDKEEA---YEFNMDECLLRLRWGRILAMTLDKLGPSATEVIRSLMLYGRLAKDEI 127
Query: 132 FDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEGPARKKGSKSA 191
N++ ++ E + LV H+++ P E G R +
Sbjct: 128 IHACGGGHGASNIM---AIEEATLLLVRHHFIQ----------PTHPEMGIIRADAEE-- 172
Query: 192 KKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEK-------NSNNVT----PGE 240
++ + + + + + N S G +E +SNN+ P
Sbjct: 173 ----RRFLTHRRRLYSTKGLAYTTANDLANARSQAGWEESERRAALVSSNNIIVLPEPHP 228
Query: 241 KRKHDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQA 300
K+K ++E + ++ ++ R N++ + +R + + VR L+ GAA V+ A+L +
Sbjct: 229 KKKRKLVEPE---LSLRPNIALRINYDRYGVLIRDELIVRAVRDRLNVGAAEVMRAVLTS 285
Query: 301 TSSAEKKVK-----------------TKNSVPL-----------SLSSIYEEVIKSEAGR 332
+ E + + + P SL+ + ++ ++ +G
Sbjct: 286 CLNDESALADPRTLVHVSANDVIDKIPEQACPFIFAGMAGSSKSSLADVVKQYLRVLSGE 345
Query: 333 NM---------TLDHVRASLVQLDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSG 383
+ T + +++ E I + + +V ++ G + R+ ++ +
Sbjct: 346 DQVASGGSFLSTEGTSLNPMYKVELEGICSKLRAALMNELVVQKLGDEGSRVLAVVVTAN 405
Query: 384 RLLETDKISDTTFVEKKDAPKILYKLWKDGYL---LMEKLVVTGARQSQFLLWKVNRQIL 440
++ ET + D + + A L +L K + M +++ GA LW ++
Sbjct: 406 KVSET-TVRDCAMIPLRSARFYLSELQKLSLVETQEMPRVMGKGAMSKDAHLWSIDLARA 464
Query: 441 WKHVLDEMFHAALNLSLRVSYELDREKELL 470
+ ++L ++ N+ LR E+DR+K +L
Sbjct: 465 YTYILSSVYKTLGNIELRKQTEVDRKKVVL 494
>gi|324510541|gb|ADY44409.1| DNA-directed RNA polymerase III subunit RPC3 [Ascaris suum]
Length = 535
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 122/558 (21%), Positives = 225/558 (40%), Gaps = 105/558 (18%)
Query: 10 AVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTT 69
V ++ +HFG LVA + LL R +++ +K +L++L Q N V
Sbjct: 23 CVEILEDHFGGLVASLGRVLLCGEATLPIIALRLRKVNVGLIKRSLMILEQHNIVTFRMD 82
Query: 70 EQPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTLK 129
++ ++ P +++L R A+ ++ + + + + L+ GRL+
Sbjct: 83 DRRVVYSIKP----------EDVLRLARSARCSFLVKTLYGEVAEAICEELVCQGRLSCS 132
Query: 130 QMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEGPARKKGSK 189
+ R S L ++ +L A V RCP L+ + + P +K +
Sbjct: 133 ECLRRVSSRLD----TPLSEVKTKFARLAEAQLVIRCP-----LVEAEDYDCPIFEKQT- 182
Query: 190 SAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGEKRKHDVLEL 249
+P + ++ A V + N ++ + KRKH E
Sbjct: 183 ------DPFIMPDLILSA------------------VKQNTTNRDSSSTTRKRKH---EG 215
Query: 250 DECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQATSSAEKKVK 309
D G D +++R N F R +R + +D V + +D A + + +E K
Sbjct: 216 DGSGDVD-ADILWRLNHPRFERYMRDEMVVDAV-SKIDSFGAECVKTIRTLLKISELKAD 273
Query: 310 TKN--SVPLSLSSIYEEVIKSEAG----------RNMTLDH---VR------ASLVQLDF 348
+K S+P+S+ + +E G R M+ D VR L +DF
Sbjct: 274 SKAAASLPISVQDVIRAANTNEMGLERNDIEVALRIMSDDSDQIVRRIGDSAGGLYVVDF 333
Query: 349 EKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYK 408
EK I + +ES++ +++ A RIFRLL + G LE ++I + K++ ++ Y
Sbjct: 334 EKAISVQCQSNIESIIREKFDSMAVRIFRLLLQKGH-LEEEQIEKLAMLSSKESKELCYT 392
Query: 409 LWKDGYLLMEKLVVTG--ARQSQFLLWKVNRQILWKHVLDEMFHAALNLSLRVSYELDRE 466
L + ++ + + T A F L+ V+ L + + D + N+ +R +E
Sbjct: 393 LLDEHFISVRHVAKTNDFAPARTFCLYHVDLSDLAQLLYDNICKTLRNVIIRRRHETKEH 452
Query: 467 KELL-----------NLPAD---------KRTGPLQDRY---------NRIRKVRILLES 497
K L+ N+ AD ++ G ++D Y R R+ + L
Sbjct: 453 KMLIERQLKMESIIANIEADASLDEASKKQQIGEVEDMYLTAADRSTLERYRRGQNDLLC 512
Query: 498 SQMKLD-DAIL--LFHDF 512
+M+L+ DA+L LF DF
Sbjct: 513 HEMELNHDALLFSLFIDF 530
>gi|195445897|ref|XP_002070533.1| GK10977 [Drosophila willistoni]
gi|194166618|gb|EDW81519.1| GK10977 [Drosophila willistoni]
Length = 523
Score = 68.9 bits (167), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 96/491 (19%), Positives = 200/491 (40%), Gaps = 90/491 (18%)
Query: 13 VITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQP 72
++ FG++V V CL T + T+L ++V AL VLI+ V +F Q
Sbjct: 12 ILKQCFGNVVESVANCLFSATTRTLSQIVSTTKLPRKEVCVALAVLIRFRLV-SFEPSQT 70
Query: 73 DGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLT-LKQM 131
+ F +Y + ++I+ +R +++ ++ ++ + + L+ G T + ++
Sbjct: 71 NPFL------PEYSLRREDIIFLLRHPRYIYLMQNKYGNVGASITEELIHSGSHTHVNKV 124
Query: 132 FDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEGPARKKGSKSA 191
+ E G + ++ R T +++++ HY+
Sbjct: 125 LLNCLADEDVGT-ANAETHRNTFLQMISDHYI---------------------------- 155
Query: 192 KKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSN-------NVTPGEKRKH 244
I PE IE + ++P RF +SD E ++ N ++ GE
Sbjct: 156 --IKMPELIEGDDQDESVP----RF------QSDECEYFRHPNIDLHLLSMISKGEASLS 203
Query: 245 DVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQATSSA 304
D + E ++++ N++ F + R +D ++ L D AA S +L +
Sbjct: 204 D---------SKESNMMWTLNYDRFHQDFRDAIMVDSIKRKLGDSAAECFSFILTLIYNT 254
Query: 305 EKKVKTKNSVPLSLSSIYEEVIKSEAGRNMT--LDHVRASLVQ----------------- 345
+ K S ++ I + + + ++ LD + L
Sbjct: 255 TDPWQRKTSNQITFMEIKQTIERKSNNLDLIKYLDQYISLLTDDSLGFLRKVGDMGNGQY 314
Query: 346 -LDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPK 404
+D E+ E +ESV+++R+G A RIFR++ + + +E + + + K+A
Sbjct: 315 LVDMERAFESLAFACIESVITERFGSKAARIFRVI-RFKKFIEQEDLQKEAMIPAKEAKS 373
Query: 405 ILYKLWKDGYLLMEKLVVTGARQS----QFLLWKVNRQILWKHVLDEMFHAALNLSLRVS 460
+ Y L+++ ++ ++ + G + F L++V ++ + +LD F A N R S
Sbjct: 374 LAYNLFQEQFIHVKVIKKPGGGSNGPAKAFYLYQVKQKDTVRMLLDISFKALYNAIERSS 433
Query: 461 YELDREKELLN 471
YE K L++
Sbjct: 434 YEKFEHKGLID 444
>gi|380020291|ref|XP_003694023.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase III
subunit RPC3-like [Apis florea]
Length = 496
Score = 68.6 bits (166), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 95/495 (19%), Positives = 202/495 (40%), Gaps = 114/495 (23%)
Query: 13 VITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQP 72
++ HFG +V V E L + G ++ T L ++K AL VLI+ V+ TE+
Sbjct: 12 ILFEHFGQIVQCVGEDLFKYGAKPLVLIRHTTHLPVTKIKEALCVLIKYGLVKYRQTEK- 70
Query: 73 DGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTLKQMF 132
+Y+++++ +L+ +R+ K++ + + +++ +L++G +T ++
Sbjct: 71 ---------GMEYILIYERVLNILRYPKYMFFVKTNCGSEAEMMLEQVLKNGYITASEVI 121
Query: 133 DRA-KSSEKEGNLV--DLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEGPARKKGSK 189
+ K E+ ++ + L+E L+ ++ R SEEEG ++
Sbjct: 122 IKTYKRMEQLPCIIQPSIPVLKEKFELLIKYQFLMRSTNK-------SEEEGNSK----- 169
Query: 190 SAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGEKRKHDVLEL 249
+ LP + D+ K LE
Sbjct: 170 ---------------CDFTLP------------DLDLAAIAK--------------YLEG 188
Query: 250 DECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANV----LSAMLQATSSAE 305
D C + D+ + + N + F + R + + + LD A + L M T+S E
Sbjct: 189 DNCNLKDK--IYWEINIDRFTQDFRDQIIVSSISKRLDKNAGELMRRLLFLMYLRTASWE 246
Query: 306 KKVKTKNSVPLS-------------LSSIYEEVIK-------------SEAGRNMTLDHV 339
T N +P + L+ ++ ++ ++G ++
Sbjct: 247 D---TSNPIPFAEIKDAVKKLNYPLLTQHLDQYLRLIEEDSSQFLKRVGDSGGGQYSVNM 303
Query: 340 RASLVQLDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEK 399
+ + QL + + E++V +R+G A RIFRL+ ++ + +E ++I +
Sbjct: 304 KEAFNQLAWASL---------ENIVMERFGSKAARIFRLV-RARKYIEQEQIQQLAMIPA 353
Query: 400 KDAPKILYKLWKDGYLLME---KLVVTGARQSQFLLWKVNRQILWKHVLDEMFHAALNLS 456
K+A + Y L ++ YL M+ K V+ A F L+ ++ ++ + ++ +HA N+
Sbjct: 354 KEAKHLTYTLLQENYLQMQEXKKSGVSAAPIKTFFLFHIDINLVVRMEIEHCYHALYNIM 413
Query: 457 LRVSYELDREKELLN 471
R YE++ K +++
Sbjct: 414 QRREYEVNSNKRMID 428
>gi|157116201|ref|XP_001652793.1| DNA-directed RNA polymerase III, 62-kS-subunit, putative [Aedes
aegypti]
gi|108876581|gb|EAT40806.1| AAEL007496-PA [Aedes aegypti]
Length = 507
Score = 68.2 bits (165), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 102/482 (21%), Positives = 191/482 (39%), Gaps = 81/482 (16%)
Query: 13 VITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQP 72
++ HFGD+V V + L T V + T LS +V AL +L++ QP
Sbjct: 12 IVQQHFGDVVRMVADDLFAAVAKTLSMVIKSTGLSKSEVCKALAILLKF----GLARHQP 67
Query: 73 DGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTLKQMF 132
+ T+Y++ ++ +L +R+ +F+ ++ ++ +C L + LL G T +
Sbjct: 68 NKAGSA----TEYILDYEKVLMVLRYPRFVHLIQTKYGPECATLTEELLRAGCQTASYVI 123
Query: 133 DR--AKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEGPARKKGSKS 190
+ A S K+ N + RE LV +Y R A +P
Sbjct: 124 LKGTAISDVKDKNTIT--KFREKFSDLVAKNYFIR--APDP------------------- 160
Query: 191 AKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGEKRKHDVLELD 250
K I +E E+A N + + RK L+
Sbjct: 161 -KPIDPSNELEMLDYESA-----------------------NLFQMPELDLRKLLDLQEG 196
Query: 251 ECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQATSSAEKKVKT 310
+ A ++ + + N E F R I+ +D A L +LQ S K +
Sbjct: 197 KTTKAPDEGIHWLVNLEKFHLDFRDSIMINAAERLIDSSAGECLKFLLQLMYSRTKPWEM 256
Query: 311 KNSVPLSLSSIYEEVIKSEAGRNMT--LDHVRASLVQLDF----------------EKII 352
++ P+ + + + K M LD A + ++F +KI+
Sbjct: 257 VSN-PIPMVELKQLCEKKSNNLEMIKFLDQYVAVIESVNFVSKFGDTGGGQFTVNMKKIL 315
Query: 353 EIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKD 412
E +E+V++++YG A RIFR++ + + +E + I + K+A ++ YKL ++
Sbjct: 316 EQLTWSCIENVITEKYGSKAARIFRVI-RMKKYIEQEDIQKEAMIPAKEAKQLTYKLLEE 374
Query: 413 GYLLMEKLVVTGARQS----QFLLWKVNRQILWKHVLDEMFHAALNLSLRVSYELDREKE 468
+L ++ TG + F L+ VN+ + +L+ + A N R +++ K
Sbjct: 375 NFLQIQTFRKTGGGNAGAPKSFFLFYVNQAQIVSMLLEICYKALYNSITRSTHDKTVNKR 434
Query: 469 LL 470
L+
Sbjct: 435 LI 436
>gi|340715006|ref|XP_003396012.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC3-like
[Bombus terrestris]
Length = 496
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 92/490 (18%), Positives = 197/490 (40%), Gaps = 94/490 (19%)
Query: 8 KHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAF 67
K +++ HFG +V V E L + G + T L ++K +L VLI+ V
Sbjct: 7 KLCFSILSEHFGQIVQSVAEDLFKHGARPIGLIYHSTHLPIIKIKESLCVLIKHGLVTYN 66
Query: 68 TTEQPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLT 127
TE+ +Y ++ +N+L +R+ +++ + +C + + +L HG +T
Sbjct: 67 QTER----------EMEYSLIVENVLLILRYPRYIFFVKTICGNECEMIFEEVLMHGYIT 116
Query: 128 LKQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEGPARKKG 187
+ + T +E+ P+ +P+ +E+ K
Sbjct: 117 ASEAITK------------------------TYKKIEQSPSDLQPSVPVLKEKFELLVKN 152
Query: 188 SKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGEKRKHDVL 247
+ + +T+E++ + + + +T K N++
Sbjct: 153 QFLMRSL---DTVEERNEKCDFTLPDLNLGAIT--------KRIEGNDI----------- 190
Query: 248 ELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAA----NVLSAMLQATSS 303
+CG + + ++ NF+ + R + I + LD+ A +L M T+S
Sbjct: 191 ---DCG---DSKIYWKVNFDRLTQDFRDQIIISAMSRRLDENAGALMRQLLILMYLRTAS 244
Query: 304 AEKKVKTKNSVPLSLSSIYEEVIKSEAGRNMTLDHVRASLVQLDFEKIIEIAQNE----- 358
E T N +PL+ I E V K + + L++ D + ++ +
Sbjct: 245 WED---TSNPIPLT--EIKEAVRKVDCPLLIQYLDQYLRLIEEDSSQFLKRVGDSGGGQY 299
Query: 359 --------------EVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPK 404
+E++V++R+G A RIFRL+ ++ + +E ++I + K+A
Sbjct: 300 SVNMKEAFKQLVWTTLENIVTERFGSKAARIFRLV-RNRKYIEQEQIQQLAMIPAKEAKH 358
Query: 405 ILYKLWKDGYLLMEKLV---VTGARQSQFLLWKVNRQILWKHVLDEMFHAALNLSLRVSY 461
+ Y L ++ YL ++++ V+ A F L+ ++ ++ ++ +HA N+ R Y
Sbjct: 359 LTYTLLQENYLQIQEIKKSGVSAAPIKTFFLFHIDLNLVVHMEVEHCYHALYNIMQRREY 418
Query: 462 ELDREKELLN 471
E K +++
Sbjct: 419 EASSNKRMID 428
>gi|393220230|gb|EJD05716.1| hypothetical protein FOMMEDRAFT_103906 [Fomitiporia mediterranea
MF3/22]
Length = 546
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/156 (30%), Positives = 78/156 (50%), Gaps = 17/156 (10%)
Query: 11 VHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTE 70
V ++ HFG L AKV LL +G LT + R+T L + A+L+L+Q N +E
Sbjct: 11 VQIVHAHFGPLTAKVASALLTRGRLTLPQIVRFTALRPRTARAAVLILVQHNLAWHSQSE 70
Query: 71 QPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLT--- 127
+ DG + + NT+ +L R+RF F+ Q F E+V +L+HG+L
Sbjct: 71 E-DG--EMIEFNTEECLL------RLRFGTFVWQADQLFGSAAAEIVSLVLDHGKLRPPD 121
Query: 128 LKQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYV 163
++ F KS K+ ++ + L +LV++ Y+
Sbjct: 122 IRSHFSSPKSKGKDASI-----YYQALYQLVSSSYL 152
>gi|328874073|gb|EGG22439.1| RNA polymerase III subunit [Dictyostelium fasciculatum]
Length = 633
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/185 (25%), Positives = 96/185 (51%), Gaps = 19/185 (10%)
Query: 22 VAKVCECLLRKGPLT-RQNVKRYTELSDEQVKNALLVLIQQNCV--QAFTTEQPDGFADG 78
V++V + L+ KG T R + ++K +L VL+Q V + + + D G
Sbjct: 20 VSEVFKHLVNKGKSTIRGLTTALKTIPTNRIKQSLQVLLQHQLVDFEEYIIKDEDKNKKG 79
Query: 79 PK----ANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTLKQMFDR 134
P ++ YV +N +HR+R K++ + + +DQ+C +++ L+++GRLT++ + +
Sbjct: 80 PAEDQVSDAYYVANVNNAIHRLRIGKYINFIKERYDQECAVIIEELMDNGRLTMESVVKQ 139
Query: 135 AKS--SEKEGNLVDLDSLR---ETLVKLVTAHYVERCPASEPLLMPISEEEGPA-----R 184
+ S S++ G+ D +R + +LV H++ + P P+ ++E+G A R
Sbjct: 140 SVSYYSQRAGSFDPEDLVRRFEDLFTQLVVDHFIMKVPKPRPISQ--NDEDGEATVKEKR 197
Query: 185 KKGSK 189
+KG +
Sbjct: 198 EKGGR 202
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 68/318 (21%), Positives = 139/318 (43%), Gaps = 52/318 (16%)
Query: 234 NNVTPGEKRKHDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANV 293
N + E+ +HD+LE EQ ++ N++ F+ + CID V LD +A +
Sbjct: 329 NVINQVEQDQHDLLE--------EQKTYWKVNYDQFLLEFKLMACIDFVEHKLDGKSAAL 380
Query: 294 LSAMLQATSSAEKKVKTKNS--VP------------------------------LSLSSI 321
+ML+ + K N+ P LSL +
Sbjct: 381 YESMLKLVKRSIKSSPDPNANISPKFIADEVFKDYNQMVDGMDQQMDNKHFENYLSLMAA 440
Query: 322 YEEVIKSEAGRNMTLDHVRASLVQLDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSK 381
I ++ R+ TL+ + ++ + ++ + +ES++ ++YG R+F+LL
Sbjct: 441 SRPAIITKQARSSTLE---TGIYNINISDVAKVVNQKMLESIIKQKYGDGGLRLFKLLM- 496
Query: 382 SGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTGAR--QSQFLLWKVNRQI 439
+ L+ +I++ + K+ +L+K+ + G + ++++ + F L+ VNR
Sbjct: 497 IKKFLDAKQIAEMAMIPLKECKVLLFKMMERGVVKLQEVPRSADHFAAKTFYLFFVNRDA 556
Query: 440 LWKHVLDEMFHAALNLSLRVSYE----LDREKELLNLPADKRTGPLQDRY-NRIRKVRIL 494
+ + +D+++ A N LR+ E D K L +P DK Q + +++K+ +
Sbjct: 557 VTEMTIDDIYKAIYNTRLRLKAEAQPHADLIKRLETVP-DKEMSEDQSKIVTKVQKITEV 615
Query: 495 LESSQMKLDDAILLFHDF 512
LE + + LD +L+ F
Sbjct: 616 LEITILNLDSDLLVLSHF 633
>gi|393225849|gb|EJD33728.1| hypothetical protein AURDEDRAFT_177195 [Auricularia delicata
TFB-10046 SS5]
Length = 355
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 76/308 (24%), Positives = 131/308 (42%), Gaps = 39/308 (12%)
Query: 3 TEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQN 62
+E G K V +I HFG L A++ LL +G L+ + R L + V+ A+LVL+Q N
Sbjct: 4 SESG-KLCVQIIHEHFGPLTAQIAAVLLHRGRLSMPQLARELGLKSQTVRAAVLVLVQHN 62
Query: 63 CVQAFTTEQPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLE 122
+ T+ + + D + R+RF ++++ + F Q+ E+V LL+
Sbjct: 63 ILWHAETDDRTEVME---------INIDECIARLRFGHYVSLAREIFGQEASEIVAILLD 113
Query: 123 HGRLTLKQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVER-------CPASEPLLMP 175
HG+L L + R S+ + V + + KL+++ +++ CP + L+
Sbjct: 114 HGKLRLPDILSRLLVSKPKEQAV----YTQMVHKLISSTHLKPSTVLSHICPRDK--LIN 167
Query: 176 ISEEEGPARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNN 235
+E +K SAK I A + R +G K K +
Sbjct: 168 YEADELKKKKTAIISAKDI-----------RGAKDLAVARLRKEEEEAEKIGFKRK-AKE 215
Query: 236 VTPGEKRKHDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLS 295
PG K ++E + V DE V +R N F +R+ + +D AA V+
Sbjct: 216 ALPGRASKKQIVEEE---VIDED-VHFRVNHSKFNVHIRNNLIVAAAAERYNDAAAVVIR 271
Query: 296 AMLQATSS 303
A L+A +
Sbjct: 272 ATLKAAEA 279
>gi|328768118|gb|EGF78165.1| hypothetical protein BATDEDRAFT_91024 [Batrachochytrium
dendrobatidis JAM81]
Length = 485
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 117/540 (21%), Positives = 203/540 (37%), Gaps = 106/540 (19%)
Query: 13 VITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQP 72
++ HFG LV KV LL KG + + ++L + ++ +L +LIQ + Q E
Sbjct: 12 ILKEHFGSLVQKVGFVLLSKGRSNLAAIAQSSKLPIKIIRESLFILIQNH--QVTFAENT 69
Query: 73 DGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTLKQMF 132
+G + Y IL R RFA +++ S ++ +LE G L ++
Sbjct: 70 EGM----RVVVYYEANIKEILLRDRFALYISTASTHLGVNAGLIISKVLEAGYLAPLKLL 125
Query: 133 DRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMP---ISEEEGPARKKGSK 189
K +EK D+ + E KLV +V A + L + I EE G
Sbjct: 126 KSCKLTEK-----DISACME---KLVQGRFVRTVSAIDSLTINDKYILEEREAIANTG-- 175
Query: 190 SAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGEKRKHDVLEL 249
A P+ + + + + EK N TP K VL+
Sbjct: 176 -----------------AGAPLSSTELA---KLRKSLAEKRSNYAQ-TPSSGTKRKVLDF 214
Query: 250 DECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQATSSAEKKVK 309
+E E++ K + ++D A ++ AML T S K
Sbjct: 215 EE-----EEN---------------RKKIAELASQRVNDTAGRLIKAMLDHTYSQLNSCK 254
Query: 310 TKNSVPLSLSSI---------------------YEEVIKSEAGRNMTLDHVRASLVQLDF 348
S + I Y E + SE R + ++ +L ++
Sbjct: 255 EPLSPSIRREMIGTLVRGQELHVHGHSNDPAMEYIEALVSE--RAKIVSNLNGTLYAINL 312
Query: 349 EKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYK 408
+ + Q + +ES++ +++G RI+RLL +L E ++ + K A + LY
Sbjct: 313 RDSVRVMQIDLIESIIQEKFGDVCRRIWRLLYMKQKLDE-KQVGKQAMINNKVARECLYT 371
Query: 409 LWKDGYLLMEKLVVTGARQSQ--FLLWKVNRQILWKHVLDEMFHAALNLSLRVSYELDRE 466
+ K+G + ++ + T + F LW V+ + +L + + LR R
Sbjct: 372 MLKEGLVYLQDVPKTMDHSASRTFFLWYVSIERTCTVLLTNAYKTLHRIKLR------RT 425
Query: 467 KELLN----LPADKRTGPL----------QDRYNRIRKVRILLESSQMKLDDAILLFHDF 512
KELL+ L R+ L Q+ + V L S+M++D ++L DF
Sbjct: 426 KELLDRTLLLEKTNRSDVLSGEAQLTTTDQENLAHLNTVLKKLHISEMRIDQMVMLLRDF 485
>gi|353235115|emb|CCA67132.1| hypothetical protein PIIN_00966 [Piriformospora indica DSM 11827]
Length = 530
Score = 65.1 bits (157), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 79/310 (25%), Positives = 134/310 (43%), Gaps = 43/310 (13%)
Query: 13 VITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQP 72
+I +HFGD+V+ V + L G L+ + + +T+L + +L+VL Q +
Sbjct: 12 IIKSHFGDMVSLVVQTLAAHGRLSFRELVLFTKLKPRAIAASLIVLSQHGLL-------- 63
Query: 73 DGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTLKQMF 132
+ + + +Y D L R RF KFL I + + + V +VQ +L+HGR+ Q+
Sbjct: 64 --WHSNVQDDERYECNVDECLQRQRFGKFLLIANDLYGEDGVLVVQTILDHGRVRFPQLI 121
Query: 133 DRAKSSEKEGNLVDL--DSLRETLVKLVTAHYVER-----CPASEPLLMPISEEEGPARK 185
+ E+ G L L L++ +K T + + A LLM + +
Sbjct: 122 EELPQIER-GRLQKLVRRMLQKRFIKSTTEYLTKSRADRIADAENRLLMA----DVTTKN 176
Query: 186 KGSKSAKKIGEPET-IEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGEKRKH 244
SAK++ E E+QV +EA+ + E + + K K
Sbjct: 177 VAVASAKRLAEKRLEAEEQVAAREREVEALGLKL----------SESKATTKSMKGKDKD 226
Query: 245 DVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQATSSA 304
E+DE ++ R NF F LR+ VRA ++ AA+V+ A+L+AT
Sbjct: 227 KEKEIDE-------TIWLRINFTTFNICLRNSLIESAVRARYNEPAASVMRAVLKAT--- 276
Query: 305 EKKVKTKNSV 314
EK + N +
Sbjct: 277 EKNIVGSNGI 286
>gi|440297472|gb|ELP90166.1| DNA-directed RNA polymerase III subunit RPC3, putative [Entamoeba
invadens IP1]
Length = 493
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 97/479 (20%), Positives = 198/479 (41%), Gaps = 64/479 (13%)
Query: 11 VHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTE 70
+ +I+N FG+ V +V LL P T ++ R T+ +V ALLVL+ ++ ++ +
Sbjct: 11 IQIISNQFGEFVGRVSRELLLH-PTTIFDLWRRTKFPYSRVYEALLVLLHHGILR-YSKD 68
Query: 71 QPDGFADGPKANTQYVVLFDN--ILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTL 128
+P V D +L +R F+ ++ +F + LL +G L
Sbjct: 69 EP------------MVCSIDQNRVLFSLRHPHFVALMQVKFGDLAKSISMTLLSYGMLNF 116
Query: 129 KQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEGPARKKGS 188
++ +S E E +D +++T LV A Y+ R + L + PA S
Sbjct: 117 DDLYAVIQSKEPE---LDRKEVKKTFDDLVKAKYIMRVNKNISDLAQLERTSTPA---PS 170
Query: 189 KSAKKIGEPETIEQQV-----VEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGEKRK 243
S K + + + + +E +P + + N+ S + ++ N +V P
Sbjct: 171 FSIMKQNDGQKKKGRKKSKAEIEKPIPKKMKAGVDIKNINSPLDQE--NQEDVEP----- 223
Query: 244 HDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQATSS 303
V+ N E + + ++ D+ A +++ M + ++
Sbjct: 224 -----------------VWMVNIEVYNKENILSKILEMATKKFDEKAGPIINKMWELSAC 266
Query: 304 AEKKVK----TKNSVPLSLSSI--YEEVIKSE----AGRNMTLDHVRASLVQLDFEKIIE 353
+ V +N + L ++ Y E++ + +N + + +L E
Sbjct: 267 GKTPVDFAVLCQNLIELPPETVRKYLEMMTRDEPFIVAKNQSAVVAETNSYKLQVEAATA 326
Query: 354 IAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDG 413
+ + +ES +S RYG A +FR+L K +L +I+D + + IL+KL++ G
Sbjct: 327 FLKGQLIESTLSSRYGVLAANVFRVL-KMKHVLTDSQIADLLIGDIDNIRGILFKLFQAG 385
Query: 414 YLLMEKLVVTGAR--QSQFLLWKVNRQILWKHVLDEMFHAALNLSLRVSYELDREKELL 470
++ +++ + R ++ + +W VN +L E A +N + R E+ + EL+
Sbjct: 386 FINGQEVPRSHLRGGKNAYFMWSVNFSQTNAILLRETAKAIMNTTERYRMEISMKAELI 444
>gi|325181778|emb|CCA16234.1| PREDICTED: similar to Polymerase (RNA) III (DNA directed)
polypeptide C (62kD) putative [Albugo laibachii Nc14]
Length = 619
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 115/616 (18%), Positives = 239/616 (38%), Gaps = 122/616 (19%)
Query: 11 VHVITNHFGDLVAKVCECLLRKGPLTRQNVKRY-------TELSDEQVKNALLVLIQQNC 63
+++I + FG + + +LR L + Y T++S ++K +LL L+Q N
Sbjct: 12 LNIIESDFGQTAKLIAQGILRSDGLKLPGIIEYVQRTVKPTQISMSEIKCSLLKLLQHNM 71
Query: 64 -----VQAFTTEQPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQ 118
V T ++ +N Y + +L+R+ F +F+ + ++F +++
Sbjct: 72 LTFKPVAPTTNKKKSEQMSHTTSNACYYIDISEVLYRLHFPRFIDLAKKKFGDAGEIIME 131
Query: 119 GLLEHGRLTLKQM-----FDRAKSSEKEGNLVDLDSLRE------------TLVKLVTAH 161
+L +GR+ + + + A+S K+ N D S+ E V++
Sbjct: 132 EILVNGRVRMDESIELMSYRLAESRLKKENSEDASSISERELQDSRELVNFNFVEMAKNR 191
Query: 162 YVERC---------PASEPLLMPISEEEGPARKKGSK-------SAKKIGEPETI----- 200
Y+ R S+ + + E+ G ++G+ S + + + I
Sbjct: 192 YISRVHPVKMTLEQQKSKSIDLMAEEQSGNKNQRGANNMIKSEISTESLADEHGIAVRVK 251
Query: 201 --EQQVVEAALPMEAMRF---SVVTNVESDVGEKEKNSNNVTPGEKR----------KHD 245
++ V + LP+E M + VESD E N P +KR KH
Sbjct: 252 KEKKNVRGSNLPVELMMLLESQDMAMVESDEAEFVGTVN--PPAKKRSRLSKRAKLPKHG 309
Query: 246 VLELDECGVADEQS--------VVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAM 297
AD QS ++R + +R LRH C+ +++ A ++SAM
Sbjct: 310 ATPYHTQTKADNQSNSEIDEKTPIWRCGTDQLLRELRHDACVRFAMENVNHVAGVIVSAM 369
Query: 298 LQATSSAEKKVKTKNSVPLSLSSIY--EEV------------------------------ 325
L + S E++ S P+S IY +EV
Sbjct: 370 LSHSMSHERESNEPTSHPMSAREIYKVDEVKQALPKEIKDTWRLLLNYLAVMVRDKSGMV 429
Query: 326 --IKSEAGRNMTLDHVRASLVQLDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSG 383
+ +E + T + + I + + + + + ++G + RI RL+ +
Sbjct: 430 TRVGAEKADSATTQGGDGGQYVVHMKNITDFLKQATMHAYIQDKFGVQSARIVRLILEK- 488
Query: 384 RLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTGARQS--QFLLWKVNRQILW 441
R LE I + + ++ + +Y L+ D ++ ++++ W VN +
Sbjct: 489 RQLEQKSIGELALLPLNESRRRVYDLYSDKFIHLQEIPKRSDHNPVHTMYTWSVNTFHIE 548
Query: 442 KHVLDEMFHAALNLSLRVSYELDREKELLNLPADKRTGPLQ-----DRYNRIRKVRILLE 496
+ + + + + L R + + KEL+ R+ L ++++++ + L+
Sbjct: 549 RVIRERVQDSICKLRSRRDFIANDNKELI-----ARSNQLVEENDLEKFDKLSRSLDRLD 603
Query: 497 SSQMKLDDAILLFHDF 512
S ++LD+ ++L+ DF
Sbjct: 604 RSLLQLDENLMLYRDF 619
>gi|403164986|ref|XP_003325023.2| hypothetical protein PGTG_06560 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375165486|gb|EFP80604.2| hypothetical protein PGTG_06560 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 612
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 77/336 (22%), Positives = 152/336 (45%), Gaps = 39/336 (11%)
Query: 12 HVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCV-----QA 66
H++T +G ++ LL +G L ++ R + L+ ++ AL+VLI QNCV
Sbjct: 14 HILTQLYGHACGEIGSILLNRGRLPFSSLLRMSCLTGNSIRAALVVLIHQNCVLHSDTSL 73
Query: 67 FTTE--QPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHG 124
TT P+ + GP+ + + D IL RVRF +F+ + ++F + +V+ LL++G
Sbjct: 74 LTTAAGDPNPSSSGPEY---FEAIPDEILTRVRFGQFVNLAYEQFGIESKLIVECLLDNG 130
Query: 125 RLTLKQMF----DRAKSSEKEGNLVDLDSLRETLVK-----------LVTAHYVERCPAS 169
+L + Q+ ++ S K + D D L+ + VK L+ Y++
Sbjct: 131 KLRVGQLVTMVCEQYYSQRKRLDETD-DGLQHSPVKMPQIVKSNVLNLLAERYLKPSHPK 189
Query: 170 EPL----LMPISEEEGPARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESD 225
+ L E++ A+ G S K+I + +++QV++ E F + +
Sbjct: 190 HSINPTDLELAYEKQLIAKLPGVPSPKEI---KAVKEQVMDMMATEETQAFEEMCS---- 242
Query: 226 VGEKEKNSNNVTPGEKRKHDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAH 285
G+K++ SN+ K + + ++ + D+ + R N+ F ++R+
Sbjct: 243 FGQKQRASNSAQNDRKAQTKRQKTEDVSLQDDMYI--RVNYARFNMKIRNSIFEQECFRS 300
Query: 286 LDDGAANVLSAMLQATSSAEKKVKTKNSVPLSLSSI 321
+ A V+ AML + ++ + S P+S +I
Sbjct: 301 YNLEAGLVMRAMLILAETKQQDLNDLVSDPISAQAI 336
>gi|355389069|gb|AER62477.1| hypothetical protein [Hordeum marinum subsp. marinum]
Length = 138
Score = 63.5 bits (153), Expect = 3e-07, Method: Composition-based stats.
Identities = 41/128 (32%), Positives = 65/128 (50%), Gaps = 16/128 (12%)
Query: 257 EQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQATSSAEKKVKTKNSVPL 316
E V++R NFE FI L+ K C D + L G + + +A+ + K NSV
Sbjct: 15 ENEVLWRVNFEKFIFCLKKKFCADRKKPKLKVGTHPIWESFFEASLTD----KDTNSVTS 70
Query: 317 SLSSIYEEVIKSEAGRNMTLDHVRASLVQL------------DFEKIIEIAQNEEVESVV 364
S+ I E++ + E G M++ ++ L L D K+IE +NEE+ES+V
Sbjct: 71 SIDGILEKLGQKEGGAAMSIGQIKPVLEDLQCITSPGEEFTFDLRKMIEACRNEEIESLV 130
Query: 365 SKRYGRDA 372
K+YG++A
Sbjct: 131 KKKYGQEA 138
>gi|189236566|ref|XP_975600.2| PREDICTED: similar to DNA-directed RNA polymerase III,
62-kS-subunit, putative [Tribolium castaneum]
Length = 475
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 99/490 (20%), Positives = 191/490 (38%), Gaps = 120/490 (24%)
Query: 1 MLTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQ 60
M +YG ++ ++ FG +V KV L + G + +K++T+L +VK AL +LI+
Sbjct: 1 MSIQYGRVVSL-ILLERFGPVVEKVGTYLFQYGTVPLLYIKKHTDLPISKVKEALCILIK 59
Query: 61 QNCVQAFTTEQPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGL 120
V FT + + A+ Y + + +L +R+AK++ ++ ++F +C +++ L
Sbjct: 60 YRLV-TFTPNRNENVAN-------YTLQHERVLLMLRYAKYINLIKKKFGTECELIMEEL 111
Query: 121 LEHGRLTLKQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEE 180
L+ T ++ + + L++L P S E+
Sbjct: 112 LQRSYWTASEL------------------ILKYLIRL-----------------PYSMED 136
Query: 181 GPARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGE 240
P K ++ P TI+ F + V+S+
Sbjct: 137 KPVPSLVIKETEQFS-PPTID--------------FKQIALVQSN--------------- 166
Query: 241 KRKHDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQA 300
K V L + GV + NF+ F + +R K ++ D+ A + +LQ
Sbjct: 167 --KAPVDSLPDQGVY------WTVNFDRFHQDMRDKLIVNAFIKKFDENAGEFVRLLLQQ 218
Query: 301 TS-SAEKKVKTKNSVP-----------------LSLSSIYEEVIKS--------EAGRNM 334
+ + N VP L+ Y V+ S EAG
Sbjct: 219 MYIRTQPWAEVSNPVPIVEIRDLVRKQATHQHLLAFFDQYVNVLDSSKLIRQSGEAGGGS 278
Query: 335 TLDHVRASLVQLDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDT 394
++ + Q +E VE +V +++ A RIFRL+ KS + +E D+I
Sbjct: 279 FQIFLKETFTQFAWET---------VEQIVLEKFDTKAARIFRLV-KSKQYIEPDQIQQL 328
Query: 395 TFVEKKDAPKILYKLWKDGYLLMEKL--VVTGARQSQFLLWKVNRQILWKHVLDEMFHAA 452
+ K+A ++ Y+L ++ +L ++ L + F L+ N + + L+ +
Sbjct: 329 AMIPAKEAKRLSYQLLEENFLQVQDLKKSTSNGPNKSFTLFYTNLDQIVRMTLELCYKTL 388
Query: 453 LNLSLRVSYE 462
N+ R ++E
Sbjct: 389 FNIMTRKNHE 398
>gi|357609201|gb|EHJ66344.1| putative DNA-directed RNA polymerase III, 62-kS-subunit [Danaus
plexippus]
Length = 497
Score = 62.4 bits (150), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 108/492 (21%), Positives = 198/492 (40%), Gaps = 111/492 (22%)
Query: 12 HVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQ 71
++ +FG++V KV L G + + T L QV +L L++ + T E
Sbjct: 11 QILNRYFGEIVEKVGNDLFMYGCKPMGMIIKSTGLPRTQVIESLRTLLKFDLA---TFEA 67
Query: 72 PDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLT---- 127
D D Y + +NIL +R+ ++L + ++ + LV+ LL+ T
Sbjct: 68 KDVIVD-------YKLQPENILLLIRYPRYLLQMKTKYGSEAEMLVEELLQQASCTATVL 120
Query: 128 LKQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASE-----PLLMPISEEEGP 182
+ + ++ K +KE NL ++ L++T + L TA Y+++ P +E P+L+P++
Sbjct: 121 IVSVMNKYK-DDKEKNL-NIVKLKDTFISLATAGYIQQAPVAEINNEIPVLVPVA----- 173
Query: 183 ARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGEKR 242
TI + +V + N NNV+
Sbjct: 174 ----------------TIVPDL----------------DVRELINAMNSNLNNVS----- 196
Query: 243 KHDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQATS 302
++ ++ N++ F R + I V +DD A +L ML+
Sbjct: 197 ---------------DNIYWKVNYDRFHLDFRDEVMIKAVTRRIDDNAGELLKLMLEQM- 240
Query: 303 SAEKKVKTKNSVPLSLSSIYEEVIKSEAGRNMTLDHVRASLVQLD--------------- 347
+S P+ L+ + + G NM +HV L ++
Sbjct: 241 YLSSSSWASDSSPVPLTDLKDGC--QRIGENMK-NHVEQYLRVIEESTGFIRRTGDAGGG 297
Query: 348 -FEKIIEIAQNEEVESV----VSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDA 402
+ I+ A + VE+V V++R G A RIFRL+ +S + LE D I + K+
Sbjct: 298 QYSVRIQHALIQLVEAVCDHTVTERLGGKAARIFRLI-RSKKYLEEDDIQKNAMLPNKEC 356
Query: 403 PKILYKLWKDGYLL---MEKLVVTGARQSQFLLWKVNRQILWKHVLDEMFHAALNLSLRV 459
++ YKL ++ ++ M K G L+ V + HV+ +M + +L+ + V
Sbjct: 357 KELTYKLLEEHFISVQPMRKTASAGGMAKAIYLYHVKLHDV-AHVVRDMCYRSLHNVMSV 415
Query: 460 SYELDREKELLN 471
S R + +LN
Sbjct: 416 S----RHRRVLN 423
>gi|328859337|gb|EGG08446.1| hypothetical protein MELLADRAFT_84617 [Melampsora larici-populina
98AG31]
Length = 604
Score = 62.4 bits (150), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 68/121 (56%), Gaps = 1/121 (0%)
Query: 12 HVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQ 71
H++T +G ++ LLR+G L ++ + + L+ +++AL+ LIQQNCV +
Sbjct: 12 HLLTTLYGHACGEIGSLLLRRGRLPFSSLVKLSSLTSHSIRSALITLIQQNCV-CHSETS 70
Query: 72 PDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTLKQM 131
+ + + V+ + IL R+RF K++TI+ + F + +++ +LE+G++ + Q+
Sbjct: 71 SASTSTQTNSPEYFEVIPNEILARIRFGKYITIVDELFGIESSSIIEFVLENGKIRIGQL 130
Query: 132 F 132
Sbjct: 131 I 131
>gi|194742686|ref|XP_001953832.1| GF17964 [Drosophila ananassae]
gi|190626869|gb|EDV42393.1| GF17964 [Drosophila ananassae]
Length = 522
Score = 62.0 bits (149), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 93/482 (19%), Positives = 195/482 (40%), Gaps = 75/482 (15%)
Query: 13 VITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQP 72
++ FG +V V +CL + + T+LS ++V AL VL++ V F+ Q
Sbjct: 12 ILEQCFGKVVQLVADCLFSATTRSLSQIASSTKLSRKEVALALAVLVKYRLVD-FSASQQ 70
Query: 73 DGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTLKQMF 132
+ F +Y + +++L +R+ +++ ++ ++ + + L+ G T +
Sbjct: 71 NPFL------AEYALRREDVLCLLRYPRYVHLVQAKYGNVGASIAEELINSGSDTATGIL 124
Query: 133 DRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEGPARKKGSKSAK 192
+ +E E +S R + ++++T HY+ + +P L+ E + K +
Sbjct: 125 VKC-LTEGENKSESAESYRNSFLQMITDHYIIK----KPELLSSDETDEVIPKFETNECD 179
Query: 193 KIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGEKRKHDVLELDEC 252
P I+ Q++ + + E+ V E
Sbjct: 180 YYRHP-NIDLQLL-----------AKIRKGEATVSE------------------------ 203
Query: 253 GVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAAN----VLSAMLQATSSAEKKV 308
A + +V+ N++ F + R ID + L + AA +L M T ++K+
Sbjct: 204 --AKDGHMVWTLNYDRFHQDFRDSIMIDAIERKLGENAAECFRFILKIMYNTTDPWQRKL 261
Query: 309 KT------------KNSVPLSLSSIYEEVIK----SEAGRNMTLDHVRASLVQLDFEKII 352
K S L L ++ I G + + L +D EK
Sbjct: 262 SNQVTFVEIKQTIEKKSNNLDLMKYLDQYISLITDDSLGFLRRVGDMGGGLFVVDMEKSF 321
Query: 353 EIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKD 412
E VESV+++R+G A RIFR++ + + +E + + + K+A + Y L+++
Sbjct: 322 ESLAFACVESVITERFGSKAARIFRVI-RCKKYIEQEDLQKEAMIPSKEAKSLAYNLFQE 380
Query: 413 GYLLMEKLVVTGARQS----QFLLWKVNRQILWKHVLDEMFHAALNLSLRVSYELDREKE 468
++ ++ + G + F L++V + + +LD + + N R ++E + K
Sbjct: 381 QFIHVKIIKKPGGGSNGPAKAFYLFQVREKDTVRMLLDVSYKSLYNTIERSNFEKNEHKG 440
Query: 469 LL 470
L+
Sbjct: 441 LI 442
>gi|330792604|ref|XP_003284378.1| hypothetical protein DICPUDRAFT_45403 [Dictyostelium purpureum]
gi|325085724|gb|EGC39126.1| hypothetical protein DICPUDRAFT_45403 [Dictyostelium purpureum]
Length = 644
Score = 62.0 bits (149), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 52/218 (23%), Positives = 95/218 (43%), Gaps = 30/218 (13%)
Query: 5 YGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTE--LSDEQVKNALLVLIQQN 62
Y K A+ ++ FGD V+KV E L+ +G + + + + + + +++K LLVLIQ N
Sbjct: 2 YEQKLAIGIVNEAFGDDVSKVFEFLVHRGKSSFKIINQALQGTVGLKRIKQCLLVLIQHN 61
Query: 63 CVQAFTTEQPDG--------FADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCV 114
P G D +++ Y + N +HR+RF KF+ + +
Sbjct: 62 LATFEEFLIPLGKDEQESLTPGDPFPSDSVYEAIIVNAIHRLRFPKFINFIKVSKGDEAA 121
Query: 115 ELVQGLLEHGRLTLKQMFDRAKSSEKEGNLVDLDSLRET----------LVKLVTAHYVE 164
+++ L++HGRL + + +A + + DS +T KL+ ++
Sbjct: 122 FILEELIDHGRLPMDMILKQASAYSRAA-----DSFEDTEEITKRFEDIFTKLIMDQFIM 176
Query: 165 RCPASEPL-----LMPISEEEGPARKKGSKSAKKIGEP 197
R P P+ I++E + S S KK +P
Sbjct: 177 RAPRPRPINDQDQSNAINKEAKKTKDSQSSSNKKEADP 214
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 62/289 (21%), Positives = 127/289 (43%), Gaps = 53/289 (18%)
Query: 225 DVGEKEKNSNNVTPGEKRKHDVL------ELDECGVADEQSVVYRANFEGFIRRLRHKGC 278
D+G+ +N+ P +K K DV E + + DE V++ N+E F+ + K C
Sbjct: 321 DIGD-----SNIQPNKKSKLDVYTVVSPQEQQQRIINDETRVLWTINYEQFVTEFKLKAC 375
Query: 279 IDHVRAHLDDGAANVLSAMLQATSSAEKKVKTKNSVPLSLSSIYEEVIKSEAGRNM---- 334
D V + + + +AM++ K+ NS L+ S +Y E E R++
Sbjct: 376 YDFVVEKNNQQSGLLFNAMVKLC----KRSIRSNSDTLT-SCVYGENALEEYNRDLDPSK 430
Query: 335 ------------TLDHVRASLV------------------QLDFEKIIEIAQNEEVESVV 364
+ R S+V Q++ II + + + VES++
Sbjct: 431 RMDKLQFEKYLSVMQASRPSMVTKMQTKSKQSSSSELGAYQVNVGNIIAVIKQKMVESII 490
Query: 365 SKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTG 424
+++G + R+F+LL LLE +I+D + K+ +L+ + + + ++++ +
Sbjct: 491 KQKFGDNGLRVFKLLLIKN-LLEPKQIADLAMIPIKECKALLFNMMQKNIIRLQEVPRSS 549
Query: 425 ARQSQ--FLLWKVNRQILWKHVLDEMFHAALNLSLRVSYELDREKELLN 471
+ F L+ V+ + + +++F A N R++ EL K++L+
Sbjct: 550 DHFANRTFYLFFVDLPSIIRDFTEDIFKAIYNTRERLNSELAPHKDMLD 598
>gi|308800048|ref|XP_003074805.1| Rpc3 DNA-directed RNA polymerase III 62 kDa polypeptide (RNA pol
(IC) [Ostreococcus tauri]
gi|116061345|emb|CAL52063.1| Rpc3 DNA-directed RNA polymerase III 62 kDa polypeptide (RNA pol
(IC) [Ostreococcus tauri]
Length = 390
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 84/158 (53%), Gaps = 8/158 (5%)
Query: 355 AQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGY 414
++ + VE+V+ R G A RI+R+L ++ LE +++D + V KD ILYKL K GY
Sbjct: 234 SRRKHVEAVIRARLGVQALRIYRMLGQTQ--LEQKQVADLSMVPVKDTRDILYKLLKFGY 291
Query: 415 LLMEKLVVTG--ARQSQFLLWKVNRQILWKHVLDEMFHAALNLSLRVSYELDREKELLNL 472
+ M+++ T A LW+V+ ++ V E+ N+ LR+ +L ++
Sbjct: 292 VQMQEIARTNDHAPSRTNYLWRVDCTVVDAVVKRELTQTLTNIHLRLLSQLQLHCRMIQ- 350
Query: 473 PADKRTGPLQDRYNRIRKVRILLESSQMKLDDAILLFH 510
P+D R ++ R V +LE ++LD+ +L+F+
Sbjct: 351 PSDSRHCRKEEVS---RDVLDILELGALRLDELLLVFN 385
>gi|345496353|ref|XP_001603173.2| PREDICTED: DNA-directed RNA polymerase III subunit RPC3-like
[Nasonia vitripennis]
Length = 500
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 90/486 (18%), Positives = 202/486 (41%), Gaps = 93/486 (19%)
Query: 13 VITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQP 72
++ HFG +V + L + GP T ++ +L ++K +L VLI+ V
Sbjct: 12 ILLEHFGPIVEQTASDLFQHGPRTLGQMRSTIKLPISKIKESLCVLIKFGIV-------- 63
Query: 73 DGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTLKQMF 132
F + + Y + D I+ +R+ +++ + + +++ +L++G
Sbjct: 64 --FYEQTERGLIYNLDTDKIITILRYPRYMYFVENCCGNEAEMMLEEVLKNG-------- 113
Query: 133 DRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEGPARKKGSKSAK 192
D+ + +VK T +E+ P P R+ K
Sbjct: 114 --------------YDTASQIIVK--TYKKLEQFP--------------PERRSSVPVLK 143
Query: 193 KIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGEKRKHDVLELDEC 252
E +V+ M ++ ++++V +D + S N+ K + + +E
Sbjct: 144 DKFE------LLVKNQFLMRSLCSDILSDVPTDKPDFSMPSLNI----KALTRLTQGNET 193
Query: 253 GVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAML-----QATSSAEKK 307
A + ++ ++ N + F + LR + + + +DD A ++ +L + S A+
Sbjct: 194 EPAGDSNIYWKVNIDRFTQDLRDQILVKSIMNRIDDSAGELMRQLLYLMYLRTASWAD-- 251
Query: 308 VKTKNSVPLSLSSIYEEVIKSEAGRNMTLDHVRASLVQLDFEKIIEIAQNEE-------- 359
S+P+ ++ I + + K+ LD +++ D + I+ +
Sbjct: 252 ----TSIPIPVTEIKDAMKKNFPSILPHLDQY-LRIIEEDSSQFIQRVGDSGGGQYSVNM 306
Query: 360 -----------VESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYK 408
+E+VV +R+G A RIFRL+ +S + +E +KI+ + K+A + +K
Sbjct: 307 KEAFHQLAWAVLENVVMERFGSKAARIFRLI-RSHKYIEQEKINQIAMIPAKEAKILTFK 365
Query: 409 LWKDGYLLMEKLV---VTGARQSQFLLWKVNRQILWKHVLDEMFHAALNLSLRVSYELDR 465
L ++ +L + +L V+ A F L+ ++ + + ++ +HA N+ R +E+
Sbjct: 366 LLEENFLQIHELKKAGVSTAPTKIFFLFHIDLNQVVRMTIEHCYHALYNVIQRREHEMTS 425
Query: 466 EKELLN 471
K +++
Sbjct: 426 NKRIID 431
>gi|170048122|ref|XP_001851545.1| DNA-directed RNA polymerase III subunit C [Culex quinquefasciatus]
gi|167870301|gb|EDS33684.1| DNA-directed RNA polymerase III subunit C [Culex quinquefasciatus]
Length = 507
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 91/480 (18%), Positives = 187/480 (38%), Gaps = 77/480 (16%)
Query: 13 VITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQP 72
+I HFGD+V V + L T + + EL+ +V A+ +L++ + QP
Sbjct: 12 IIQQHFGDVVRMVADDLFSGVAKTLPMIVKSCELTKSEVCKAIAILLKF----SLARHQP 67
Query: 73 DGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTLKQMF 132
+ T+Y++ ++ +L +R+ +++ ++ ++ + L + LL G T +
Sbjct: 68 NKAGTA----TEYILEYEKVLMILRYPRYVHLIQTKYGHESAILTEELLRAGCQTASCII 123
Query: 133 DRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEGPARKKGSKSAK 192
+A + + RE LV ++ R P
Sbjct: 124 LKATAISDAKGKDTITKFREKFSDLVAKNFFIRAP------------------------- 158
Query: 193 KIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGEKRKHDVLELDEC 252
EP+ ++Q AL E + + ++ RK L+ +
Sbjct: 159 ---EPKPVDQNTDLLALEYEDPKLFQMPELDL-----------------RKLLDLQEKKT 198
Query: 253 GVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQATSSAEKKVKTKN 312
A ++ + + N E F R I V +D AA +LQ + K + K
Sbjct: 199 TKAPDEGIHWLINLEKFHLDFRDTIMISSVERLIDPTAAECFKHLLQLMYTKTKPWE-KV 257
Query: 313 SVPLSLSSIYEEVIKSEAGRNMT--LDHVRASLVQLDF----------------EKIIEI 354
S P+S++ + + K + LD A L++ + I E
Sbjct: 258 SNPISMAELKQLCEKKSDNLELLKFLDQYVAVTESLNYLSKFGDMGGGQYTVNMKTIFEQ 317
Query: 355 AQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGY 414
+E++++++YG A RIFR++ + + +E + I + K+A ++ YKL ++ +
Sbjct: 318 LTWNCIENIITEKYGSKAARIFRVI-RLKKYIEQENIQKEAMIPAKEAKQLTYKLLEENF 376
Query: 415 LLMEKLVVTGARQS----QFLLWKVNRQILWKHVLDEMFHAALNLSLRVSYELDREKELL 470
L ++ G + F L+ VN+ + +L+ + + N R +++ K L+
Sbjct: 377 LQIQAFRKPGGGNAGAPKSFFLFYVNQMQIVSMLLEICYKSLYNSITRSTHDKTVNKRLI 436
>gi|198429990|ref|XP_002130318.1| PREDICTED: similar to DNA-directed RNA polymerase III subunit RPC3
(RNA polymerase III subunit C3) (DNA-directed RNA
polymerase III subunit C) [Ciona intestinalis]
Length = 521
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 104/509 (20%), Positives = 196/509 (38%), Gaps = 84/509 (16%)
Query: 10 AVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTT 69
A ++ H+G + A V LL+ G + + L +QV+ AL +LIQ +
Sbjct: 9 AYELLQEHYGKIAADVASFLLQNGWQPLRYIALKANLKLDQVRKALCLLIQHKLAK---- 64
Query: 70 EQPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRL--- 126
F + +Y + +N+L + KF+ + + +V+ L+HG +
Sbjct: 65 -----FHVRKRKIVEYAINIENVLSILFHPKFIYTVKLLYGDAAELIVEEALQHGIILMS 119
Query: 127 -TLKQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEGPARK 185
+K + DR G + + LV H+++R
Sbjct: 120 TAIKNVADRLPDENGSGK------IEKAFKDLVQTHFLQR-------------------- 153
Query: 186 KGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGEKR--- 242
+ E E+ +V EA + + T E + K + + P KR
Sbjct: 154 ------EPEVEKNEEEEYIVPIFTQNEADLYRLPTLSEESLKRKRSDDGSDEPKAKRLKS 207
Query: 243 KHDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQATS 302
+H+ + V ++ V + N F + R + + V ++ AML+ S
Sbjct: 208 EHETPSM-PTDVVEDDGVYWSVNISRFQQYFRDQSIVASVTQRFGTPCGEIVRAMLR-IS 265
Query: 303 SAEKKVKTKNSVPLSLSSIYEEVIKSEAGRNMTLDHVRASLVQL--DFEKIIEIAQNE-- 358
+++ P+S + I + + + ++HV L L D ++I+++ +
Sbjct: 266 EVTTPANAQSTQPISSAEIARSL-----PQKLPMEHVEQHLKLLSNDEDQIVQLFDDSGS 320
Query: 359 ------------------EVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKK 400
V S V +RYG A RIFRLL + LE ++ + + K
Sbjct: 321 GGLYVVNLKNSALALATATVLSYVQQRYGSKACRIFRLLMLK-KHLEQKQVEEFAMIPPK 379
Query: 401 DAPKILYKLWKDGYLLMEKLVVTG--ARQSQFLLWKVNRQILWKHVLDEMFHAALNLSLR 458
+A LY + + ++M+++ T A F L+ VN Q L + +L + + NL R
Sbjct: 380 EAKGYLYHMLAENMVIMQEVPRTPDHAPARTFYLYSVNIQRLSRILLVKCYKTCTNLMTR 439
Query: 459 VSYELDREKELLN----LPADKRTGPLQD 483
++ + K +L+ + A K T P D
Sbjct: 440 HNHLIKTNKRILDKEERITAIKATLPDAD 468
>gi|260784191|ref|XP_002587152.1| hypothetical protein BRAFLDRAFT_241929 [Branchiostoma floridae]
gi|260784193|ref|XP_002587153.1| hypothetical protein BRAFLDRAFT_241950 [Branchiostoma floridae]
gi|229272290|gb|EEN43163.1| hypothetical protein BRAFLDRAFT_241929 [Branchiostoma floridae]
gi|229272291|gb|EEN43164.1| hypothetical protein BRAFLDRAFT_241950 [Branchiostoma floridae]
Length = 204
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 44/163 (26%), Positives = 79/163 (48%), Gaps = 14/163 (8%)
Query: 13 VITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQP 72
++ + +G++V V L KG +++ T+L +VK AL VLIQ N +
Sbjct: 12 LLQHQYGEIVENVGTFLASKGSFALRDITDGTKLGVNEVKKALCVLIQHNMMD------- 64
Query: 73 DGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTLKQMF 132
F + +Y V + +L R+ +++ + LV+ LL HG++ + Q+
Sbjct: 65 --FEKNRRGLIEYTVHINKVLLITRYPRYIYCAKTLYGDVGEFLVEELLSHGQMLMSQVC 122
Query: 133 ----DRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEP 171
DR + +EG +D +R+T V+LV H+++R AS P
Sbjct: 123 RRVSDRITQALEEGQSMDEFQVRKTFVELVKTHFLQRV-ASPP 164
>gi|298707347|emb|CBJ29991.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 324
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 58/290 (20%), Positives = 131/290 (45%), Gaps = 37/290 (12%)
Query: 259 SVVYRANFEGFIRRLRHKGCIDHVRAHLDDG--AANVLSAMLQATSSAEKKVKTKNSVPL 316
SV+++ F+ F R R+ + V+ A V+ ML +S E+KV + S +
Sbjct: 36 SVLWKLGFDKFHRDFRNLALLGLVQDRFPKSKLAYLVVKVMLDNSSPTERKVDEQVSASI 95
Query: 317 SLSSIYEEVIKSEAGRNMT-------------------------LDHVRASLVQ-----L 346
S +++++ ++ N+T + + S Q +
Sbjct: 96 SARDLFDKLCEAWQTNNLTKNKAVPDWRRFVSWMSALCTDLTSMVSKIPGSDTQNPRYVV 155
Query: 347 DFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKIL 406
+ K+++ + V+ RYG++ RI +L ++ + L+ ++ + + DA + L
Sbjct: 156 NMAKMVQYIRGNLVKCTARDRYGKETARIMEILLQN-KYLDQQQVGEMAMIPPSDARERL 214
Query: 407 YKLWKDGYLLMEKLVVTGARQ--SQFLLWKVNRQILWKHVLDEMFHAALNLSLRVSYELD 464
Y+L +D + ++++ R + F LW + + + VL+ ++ A LN+ LR +
Sbjct: 215 YRLVRDRMVSVQEVPKRADRNPNTTFYLWTIKHDQVAQVVLESLYKAMLNMRLRRKFVYS 274
Query: 465 REKELLNLPADKR--TGPLQDRYNRIRKVRILLESSQMKLDDAILLFHDF 512
+K L A R ++R +++R+ L+++ ++LD+ ++ F+ F
Sbjct: 275 NDKALFIHDAAARLSNDAERERLDQVRRSLDRLDTALLRLDENLMFFNTF 324
>gi|145343676|ref|XP_001416439.1| DNA-directed RNA polymerase III 62 kDa polypeptide (RNA polymerase
C subunit 3) [Ostreococcus lucimarinus CCE9901]
gi|144576664|gb|ABO94732.1| DNA-directed RNA polymerase III 62 kDa polypeptide (RNA polymerase
C subunit 3) [Ostreococcus lucimarinus CCE9901]
Length = 392
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 65/118 (55%), Gaps = 4/118 (3%)
Query: 352 IEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWK 411
+ + + + VE+V+ R G A RIFR+L ++ LE ++++ + V KD ILYKL K
Sbjct: 230 VHLRRQKHVEAVIKTRLGAQALRIFRVLIRNQ--LEQKQVAELSMVPVKDTRDILYKLLK 287
Query: 412 DGYLLMEKLVVT--GARQSQFLLWKVNRQILWKHVLDEMFHAALNLSLRVSYELDREK 467
GY+ M+++ T A LW+V+ + K V E+ A N+ LR +E+ R +
Sbjct: 288 FGYVQMQEIARTHDHAPSRTNYLWRVDCSDVEKTVKRELIQALTNVHLRKLFEVRRYR 345
>gi|20070909|gb|AAH26793.1| Polymerase (RNA) III (DNA directed) polypeptide C [Mus musculus]
Length = 202
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 74/155 (47%), Gaps = 13/155 (8%)
Query: 17 HFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQPDGFA 76
HFG++V K+ L+R G + + T+ S +QVK AL VLI N V +
Sbjct: 16 HFGEIVEKIGVHLVRTGSQPLRVIAHDTKASLDQVKKALCVLIHHNLVL---------YH 66
Query: 77 DGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTL----KQMF 132
+ +Y +L +R+ +++ + +V+ LL +G++T+ K++
Sbjct: 67 VHKRGVVEYEAQCSRVLRMLRYPRYIYTTKTLYGDTGELIVEELLLNGKMTMSAVVKKVA 126
Query: 133 DRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCP 167
DR + ++G +D + V+L H+V+RCP
Sbjct: 127 DRLTETMEDGKTMDYAEVSNAFVRLADTHFVQRCP 161
>gi|195500509|ref|XP_002097404.1| GE26202 [Drosophila yakuba]
gi|194183505|gb|EDW97116.1| GE26202 [Drosophila yakuba]
Length = 522
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 92/482 (19%), Positives = 191/482 (39%), Gaps = 75/482 (15%)
Query: 13 VITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQP 72
++ FG +V V +CL T + T+ S ++V AL VL++ V ++Q
Sbjct: 12 ILEQCFGKVVQAVADCLFSATTRTLGQITSATKFSRKEVAFALAVLVKFRLVDFAASKQN 71
Query: 73 DGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTLKQMF 132
A +Y + +++L +R+ +++ ++ ++ + + L+ G T +
Sbjct: 72 PFLA-------EYALRREDVLCLLRYPRYVHLVQTKYGNVGASIAEELINSGSDTATGIL 124
Query: 133 DRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEGPARKKGSKSAK 192
+ +E E +S R T ++++T HY+ + P E L+ +E P K +
Sbjct: 125 VKC-LAENENKTESPESYRNTFLQMITDHYIIKRP--ELLVGDDQDENVP--KFETNECD 179
Query: 193 KIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGEKRKHDVLELDEC 252
P I+ Q++ EA T E R
Sbjct: 180 FFRHP-NIDLQLLAKIHKGEA-----------------------TLAEAR---------- 205
Query: 253 GVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAAN----VLSAMLQATSSAEKKV 308
+ +V+ N++ F + R +D + L + AA +L M T E+K+
Sbjct: 206 ----DSHMVWNLNYDRFHQDFRDTIMVDAIERKLGENAAECFRFILKIMYNTTDPWERKL 261
Query: 309 KT------------KNSVPLSLSSIYEEVI----KSEAGRNMTLDHVRASLVQLDFEKII 352
+ S L L ++ I + G + + + +D E
Sbjct: 262 SNQITFVEIKQAIERKSNNLDLMKYLDQYISLLTEDSLGFFRRVGDMGGGVYVVDMEHAF 321
Query: 353 EIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKD 412
E E V+++R+G A RIFR++ +S + +E + + + K+A + Y L+++
Sbjct: 322 ESLAFACAECVITERFGSKAARIFRVI-RSKKYIEQEDLQKEAMIPSKEAKSLAYNLFQE 380
Query: 413 GYLLMEKLVVTGARQS----QFLLWKVNRQILWKHVLDEMFHAALNLSLRVSYELDREKE 468
++ ++ + G + F L++V + + +LD + + N R ++E + K
Sbjct: 381 QFIHVKIIKKPGGGSNGPAKAFYLFQVKEKDTVRMLLDASYKSLYNTIERSNFEKNEHKG 440
Query: 469 LL 470
L+
Sbjct: 441 LI 442
>gi|167382764|ref|XP_001736255.1| DNA-directed RNA polymerase III subunit RPC3 [Entamoeba dispar
SAW760]
gi|165901422|gb|EDR27505.1| DNA-directed RNA polymerase III subunit RPC3, putative [Entamoeba
dispar SAW760]
Length = 499
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 90/484 (18%), Positives = 190/484 (39%), Gaps = 68/484 (14%)
Query: 11 VHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTE 70
V ++ N FG V ++ +CLL K P T ++ R ++ AL VL+ + ++ ++ E
Sbjct: 11 VQIVENQFGKFVGQITKCLLVK-PSTIFDLWRQCHQPYSKMYEALFVLLHHSILK-YSNE 68
Query: 71 QPDGFADGPKANTQYVVLFDN--ILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTL 128
+P ++ D IL +R + F+ ++ Q+F + E+ L+ +G L
Sbjct: 69 EP------------VIISIDQNRILFSLRHSHFIALMQQKFGELAKEISTTLITYGMLNF 116
Query: 129 KQMFDRAKSSEKEGNLVDLDSLRETLVK----------LVTAHYVERCPASEPLLMPISE 178
+ +F +S + DL + + +VK +V +ER P + +
Sbjct: 117 EDIFAVLQSKNIDVKENDLKIVFDEMVKEKYITRVNKNVVDLVQLERTSTPAPSFSTVKQ 176
Query: 179 EEGPARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTP 238
E R+KG + K+ V E +P + VG K ++
Sbjct: 177 NEN-VRRKGIRKRGKV-------DVVTENPIPKKV-----------KVGIDLKAQTSINS 217
Query: 239 GEKRKHDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAML 298
K + +D V+ N E + + +D V D+ A ++ M
Sbjct: 218 STKVED----------SDNSQPVWTVNIEVYNKETILYKLLDLVNKKFDNKAVPIIEKMW 267
Query: 299 QATSSAEKKV-------KTKNSVPLSLSSIYEEVIKSEA---GRNMTLDHVRASLVQLDF 348
++ + V + P ++ E + + E +N + + +L
Sbjct: 268 DLSAYGKTPVDFAILCQNLREIAPETIRKYLEMMSRDEPFIIAKNQSAFVSDTNSFKLQV 327
Query: 349 EKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYK 408
+ + +ES + ++G I R+L K +L +I+D E + + LY+
Sbjct: 328 DAATAFLKGVMIESCIQSKFGVIGASIHRVL-KIKHILTDSQIADLLIGEGDEVKRGLYQ 386
Query: 409 LWKDGYLLMEKLVVTGAR--QSQFLLWKVNRQILWKHVLDEMFHAALNLSLRVSYELDRE 466
+ + GY+ +++ + R ++ + +W +N + +L E + +N R+ E+ +
Sbjct: 387 MHQAGYINGQEVPKSNIRGGKNSYYMWSINFSQINAILLSETAKSLMNTMDRLKLEISSK 446
Query: 467 KELL 470
L+
Sbjct: 447 SALI 450
>gi|383855772|ref|XP_003703384.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC3-like
[Megachile rotundata]
Length = 511
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 53/255 (20%), Positives = 113/255 (44%), Gaps = 51/255 (20%)
Query: 251 ECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAML-----QATSSAE 305
+CG + + + NF+ F + LR + + + LD+ A ++ +L + S A+
Sbjct: 194 DCG---DDKIYWEVNFDRFTQDLRDQIIVSAMHKRLDENAGELMRQLLFLMYLRTASWAD 250
Query: 306 KKVKTKNSVPL-------------SLSSIYEEVIK-------------SEAGRNMTLDHV 339
T N +PL SL+ ++ ++ ++G ++
Sbjct: 251 ----TSNPIPLTEIKDAVKKINYPSLTQYLDQYLRLIEEDSSQFVKRVGDSGGGQYSINM 306
Query: 340 RASLVQLDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEK 399
+ + QL + + E++V +R+G A RIFRL+ + + +E ++I +
Sbjct: 307 KEAFSQLAWTTL---------ENIVMERFGSKAARIFRLV-RDRKYIEQERIQQLAMIPA 356
Query: 400 KDAPKILYKLWKDGYLLMEKLV---VTGARQSQFLLWKVNRQILWKHVLDEMFHAALNLS 456
K+A + Y L ++ YL M++L V+ A F L+ ++ ++ + ++ +HA N
Sbjct: 357 KEAKHLTYTLLQENYLQMQELKKPGVSTAPIKTFFLFHIDLNMVVRMEVEHCYHALYNTM 416
Query: 457 LRVSYELDREKELLN 471
R YE+ K +++
Sbjct: 417 QRREYEISSNKRMID 431
>gi|407044497|gb|EKE42630.1| RNA polymerase III subunit, putative [Entamoeba nuttalli P19]
Length = 499
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 92/484 (19%), Positives = 194/484 (40%), Gaps = 68/484 (14%)
Query: 11 VHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTE 70
V ++ N FG V ++ + LL K P T ++ R ++ AL VL+ + ++ ++ E
Sbjct: 11 VQIVENQFGKFVGQITKYLLVK-PSTIFDLWRQCHQPYSKMYEALFVLLHHSILK-YSNE 68
Query: 71 QPDGFADGPKANTQYVVLFDN--ILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTL 128
+P ++ D IL +R + F+ ++ Q+F + E+ L+ +G L
Sbjct: 69 EP------------VIISIDQNRILFSLRHSHFIALMQQKFGELAKEISITLITYGMLNF 116
Query: 129 KQMFDRAKSSEKEGNLVDLDSLRETLVK----------LVTAHYVERCPASEPLLMPISE 178
+ +F +S + DL ++ + +VK +V +ER P + +
Sbjct: 117 EDIFAVLQSKNIDVKESDLKAVFDEMVKEKYITRVNKNVVDLVQLERTSTPAPSFSTVKQ 176
Query: 179 EEGPARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTP 238
E R+KG + KI V E +P + V D+ + + N N+ T
Sbjct: 177 NEN-VRRKGIRKRGKI-------DVVTENPIPKKV-------KVGIDL-KAQTNLNSTTK 220
Query: 239 GEKRKHDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAML 298
E +D V+ N E + + +D V D+ A ++ M
Sbjct: 221 AED-------------SDNSQPVWTVNIEVYNKETILYKLLDLVNKKFDNKAVPIIEKMW 267
Query: 299 QATSSAEKKV-------KTKNSVPLSLSSIYEEVIKSEA---GRNMTLDHVRASLVQLDF 348
++ + V + P ++ E + + E +N + + +L
Sbjct: 268 DLSAYGKTPVDFAILCQNLREIAPETIRKYLEMMSRDEPFIIAKNQSAFVSDTNSFKLQV 327
Query: 349 EKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYK 408
+ + +ES + ++G I R+L K +L +I+D E ++ + LY+
Sbjct: 328 DAATAFLKGVMIESCIQSKFGVIGASIHRVL-KIKHILTDSQIADLLIGEGEEVKRGLYQ 386
Query: 409 LWKDGYLLMEKLVVTGAR--QSQFLLWKVNRQILWKHVLDEMFHAALNLSLRVSYELDRE 466
+ + GY+ +++ + R ++ + +W +N + +L E + +N R+ E+ +
Sbjct: 387 MHQAGYINGQEVPKSNIRGGKNSYYMWSINFSQINAILLSETAKSLMNTMDRLKLEISSK 446
Query: 467 KELL 470
L+
Sbjct: 447 SALI 450
>gi|195166136|ref|XP_002023891.1| GL27319 [Drosophila persimilis]
gi|194106051|gb|EDW28094.1| GL27319 [Drosophila persimilis]
Length = 522
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 91/484 (18%), Positives = 192/484 (39%), Gaps = 77/484 (15%)
Query: 13 VITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQP 72
++ FG + V +CL T + T+LS ++V AL VLI V F +
Sbjct: 12 IVEQCFGKVSQSVSDCLFSATTRTLSQIASATKLSRKEVGLALSVLINFRLVN-FEATKL 70
Query: 73 DGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTLKQMF 132
+ F +Y + +IL +R+ +++ ++ +++ + + L+ G T
Sbjct: 71 NPFV------PEYSLSRQDILCLLRYPRYIHMVQKKYGSIGASIAEELISAGSDTASATL 124
Query: 133 DRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEGPARKKGSKSAK 192
+ S E + +S R ++++T HY+
Sbjct: 125 TKCLSDE-DTRADSAESYRNIFLQMITDHYI----------------------------- 154
Query: 193 KIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSN-NVTPGEKRKHDVLELDE 251
I PE I + + LP ES+ + ++ N ++ EK + L E
Sbjct: 155 -IKRPELILSEEQDEVLP----------KFESNECDYFRHPNVDLQLIEKIRRGEATLAE 203
Query: 252 CGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAAN----VLSAMLQATSSAEKK 307
G + ++++ N++ F + R ID + L + A+ +L M + T ++K
Sbjct: 204 AG---DSNMIWNVNYDRFHQDFRDAIMIDAIERKLGENASECFRFILKIMYKTTDPWQRK 260
Query: 308 VKT------------KNSVPLSLSSIYEEVIK----SEAGRNMTLDHVRASLVQLDFEKI 351
+ K S L L ++ I G + + L +D E
Sbjct: 261 LSNQITFVDIKQTIEKKSNNLDLMKHLDQYITLLTDDSLGFLRRVGDMGGGLYVVDMEHA 320
Query: 352 IEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWK 411
+ +ESV+++R+G A RIFR++ + + +E + + + K+A + Y L++
Sbjct: 321 FQSLAFACIESVITERFGSKAARIFRVI-RFKKFIEQEDLQKEAMIPAKEAKSLAYNLFQ 379
Query: 412 DGYLLMEKLVVTGARQS----QFLLWKVNRQILWKHVLDEMFHAALNLSLRVSYELDREK 467
D ++ ++ + G + F L+++ + + +LD + + N R ++E +
Sbjct: 380 DQFIHVKAIKKAGGGGNGLAKAFYLFQIKEKDSVRMLLDVCYKSLYNTIERSNFEKNEHT 439
Query: 468 ELLN 471
L++
Sbjct: 440 GLID 443
>gi|125773573|ref|XP_001358045.1| GA11520 [Drosophila pseudoobscura pseudoobscura]
gi|54637780|gb|EAL27182.1| GA11520 [Drosophila pseudoobscura pseudoobscura]
Length = 522
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 91/484 (18%), Positives = 193/484 (39%), Gaps = 77/484 (15%)
Query: 13 VITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQP 72
++ FG + V +CL T + T+LS ++V AL VLI V F +
Sbjct: 12 IVEQCFGKVSQSVSDCLFSATTRTLSQIASATKLSRKEVGLALSVLINFRLVN-FEATKL 70
Query: 73 DGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTLKQMF 132
+ F +Y + +IL +R+ +++ ++ +++ + + L+ G T
Sbjct: 71 NPFV------PEYSLSRQDILCLLRYPRYIHMVQKKYGSIGASIAEELISAGSDTASATL 124
Query: 133 DRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEGPARKKGSKSAK 192
+ SE++ +S R ++++T HY+
Sbjct: 125 IKC-LSEEDTRADSAESYRNIFLQMITDHYI----------------------------- 154
Query: 193 KIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSN-NVTPGEKRKHDVLELDE 251
I PE I + + LP ES+ + ++ N ++ EK + L E
Sbjct: 155 -IKRPELILSEEQDEVLP----------KFESNECDYFRHPNVDLQLIEKIRRGEATLAE 203
Query: 252 CGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAAN----VLSAMLQATSSAEKK 307
G + ++++ N++ F + R ID + L + A+ +L M + T ++K
Sbjct: 204 AG---DSNMIWNVNYDRFHQDFRDAIMIDAIERKLGENASECFRFILKIMYKTTDPWQRK 260
Query: 308 VKT------------KNSVPLSLSSIYEEVIK----SEAGRNMTLDHVRASLVQLDFEKI 351
+ K S L L ++ I G + + L +D E
Sbjct: 261 LSNQITFVDIKQTIEKKSNNLDLMKHLDQYITLLTDDSLGFLRRVGDMGGGLYVVDMEHA 320
Query: 352 IEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWK 411
+ +ESV+++R+G A RIFR++ + + +E + + + K+A + Y L++
Sbjct: 321 FQSLAFACIESVITERFGSKAARIFRVI-RFKKFIEQEDLQKEAMIPAKEAKSLAYNLFQ 379
Query: 412 DGYLLMEKLVVTGARQS----QFLLWKVNRQILWKHVLDEMFHAALNLSLRVSYELDREK 467
D ++ ++ + G + F L+++ + + +LD + + N R ++E +
Sbjct: 380 DQFIHVKAIKKAGGGGNGLAKAFYLFQIKEKDSVRMLLDVCYKSLYNTIERSNFEKNEHT 439
Query: 468 ELLN 471
L++
Sbjct: 440 GLID 443
>gi|403307951|ref|XP_003944445.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC3 [Saimiri
boliviensis boliviensis]
Length = 463
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 52/235 (22%), Positives = 104/235 (44%), Gaps = 30/235 (12%)
Query: 260 VVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQATSSAEKKVKTKNSVPLSLS 319
+ ++AN + F + R + + V +D ++ ++ ML+ + ++ T +S P +
Sbjct: 162 IYWQANLDRFHQHFRDQAIVSAVANRMDQTSSEIVRTMLRMS-----EITTSSSAPFTQP 216
Query: 320 SIYEEVIKS-EAGRNMT---------------LDHVRAS------LVQLDFEKIIEIAQN 357
E+ +S G N++ L+ V S + ++ K +
Sbjct: 217 LSSNEIFRSLPVGYNISKQVLDQYLTLLADDPLEFVGKSGDSGGGMYVINLHKALASLAT 276
Query: 358 EEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLM 417
+ESVV +R+G RIFRL+ + + LE ++ D + K+A +LYK+ + ++ +
Sbjct: 277 ATLESVVQERFGSRCARIFRLVLQK-KHLEQKQVEDFAMIPAKEAKDMLYKMLSENFISL 335
Query: 418 EKLVVTG--ARQSQFLLWKVNRQILWKHVLDEMFHAALNLSLRVSYELDREKELL 470
+++ T A F L+ VN + +L + + NL R +E K LL
Sbjct: 336 QEIPKTPDHAPSRTFYLYTVNILSAARMLLHRCYKSIANLIERRQFETKENKRLL 390
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 59/123 (47%), Gaps = 13/123 (10%)
Query: 50 QVKNALLVLIQQNCVQAFTTEQPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEF 109
QVK AL VL+Q N V + + +Y +L +R+ +++ +
Sbjct: 2 QVKKALCVLVQHNLV---------SYQVHKRGVVEYEAQCSRVLRMLRYPRYIYTTKTLY 52
Query: 110 DQQCVELVQGLLEHGRLTL----KQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVER 165
+V+ LL +G+LT+ K++ DR + ++G +D + T V+L H+V+R
Sbjct: 53 SDTGELIVEELLLNGKLTMSAVVKKVADRLTETMEDGKTMDYAEVSNTFVRLADTHFVQR 112
Query: 166 CPA 168
CP+
Sbjct: 113 CPS 115
>gi|21357263|ref|NP_650207.1| CG12267, isoform A [Drosophila melanogaster]
gi|320542649|ref|NP_001189212.1| CG12267, isoform B [Drosophila melanogaster]
gi|15291747|gb|AAK93142.1| LD24919p [Drosophila melanogaster]
gi|23171112|gb|AAF54828.2| CG12267, isoform A [Drosophila melanogaster]
gi|220944880|gb|ACL84983.1| CG12267-PA [synthetic construct]
gi|220954778|gb|ACL89932.1| CG12267-PA [synthetic construct]
gi|318068760|gb|ADV37303.1| CG12267, isoform B [Drosophila melanogaster]
Length = 522
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 93/482 (19%), Positives = 191/482 (39%), Gaps = 75/482 (15%)
Query: 13 VITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQP 72
++ FG +V V +CL T + T+LS ++V AL VL++ V F +
Sbjct: 12 ILEQCFGKVVQAVADCLFSATTRTLGQITSATKLSRKEVAFALAVLVKFRLVD-FAASKA 70
Query: 73 DGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTLKQMF 132
+ F +Y + +++L +R+ +++ ++ ++ + + L+ G T +
Sbjct: 71 NPFL------AEYALRREDVLCLLRYPRYVHLVQTKYGNVGASISEELINSGSDTATGIL 124
Query: 133 DRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEGPARKKGSKSAK 192
+ +E E +S R T ++++T HY+ + P E L+ +E P K +
Sbjct: 125 LKC-LAENENKAESPESYRNTFLEMITDHYIIKRP--ELLVGDDQDENVP--KFETNECD 179
Query: 193 KIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGEKRKHDVLELDEC 252
P I+ Q++ EA T E R
Sbjct: 180 FFRHP-NIDLQLLAKIQKGEA-----------------------TLAEAR---------- 205
Query: 253 GVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAAN----VLSAMLQATSSAEKKV 308
+ +V+ N + F + R +D + L + AA +L M T E+K+
Sbjct: 206 ----DSHMVWHLNHDRFHQDFRDTIMVDAIERKLGENAAECFKFILKIMYNTTDPWERKL 261
Query: 309 KT------------KNSVPLSLSSIYEEVI----KSEAGRNMTLDHVRASLVQLDFEKII 352
+ S L L ++ I + G + + + +D E
Sbjct: 262 SNQITFVEIKQAIERKSNNLDLMKYLDQYISLLTEDSLGFFRRVGDMGGGVYVVDMEHAF 321
Query: 353 EIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKD 412
E VE V+++R+G A RIFR++ + + +E + + + K+A + Y L+++
Sbjct: 322 ESLAFACVECVITERFGSKAARIFRVI-RCKKYIEQEDLQKEAMIPSKEAKSLAYNLFQE 380
Query: 413 GYLLMEKLVVTGARQS----QFLLWKVNRQILWKHVLDEMFHAALNLSLRVSYELDREKE 468
++ ++ + G + F L++V + + +LD + + N R ++E + K
Sbjct: 381 QFIHVKIIKKPGGGSNGPAKAFYLFQVKEKDTVRMLLDASYKSLYNTIERSNFEKNEHKG 440
Query: 469 LL 470
L+
Sbjct: 441 LI 442
>gi|167517589|ref|XP_001743135.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163778234|gb|EDQ91849.1| predicted protein [Monosiga brevicollis MX1]
Length = 484
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 90/466 (19%), Positives = 181/466 (38%), Gaps = 82/466 (17%)
Query: 3 TEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQN 62
EY A +I + FG +VA V L + R+ S + ++ A+ VLIQ
Sbjct: 22 AEYRLDCAASIIESQFGPIVASVFRVLAIQPCHVRRLYVLCKGTSHKNIRKAVTVLIQHG 81
Query: 63 CVQAFTTEQPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLE 122
++ E P +A +++L R+ F + ++ + + + L
Sbjct: 82 MLEYEEAEHPIFYAK-----------IEDVLLRLHFPAYAHVIGTMYGTLAERIFEQLFL 130
Query: 123 HGRLTLKQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEGP 182
HG L+ L L T+V+L Y + L + ++
Sbjct: 131 HG-------------------LMRLSRLMGTVVQLTGGQYSQ--TEILELFRTLVQDARV 169
Query: 183 ARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGEKR 242
+ G+K ++ P+ + N++ + +++ +NN++ + R
Sbjct: 170 IQLHGAKDSELFTFPDECK-------------------NLDKLISQEDGATNNISADQHR 210
Query: 243 KHDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANV---LSAMLQ 299
+ + +L+ + + ++RA + D AA + L+A+ Q
Sbjct: 211 YWTICHTQ------------------LLDKLQTRWGVTYIRAKISDEAAIIVEALAALRQ 252
Query: 300 ATSSAE--KKVKTKNSVPLSLSSIYE--EVIKSEAGRNMTLDHVRASLVQLDFEKIIEIA 355
+ S E ++K + LS I E +V+ SE + + A + + + ++
Sbjct: 253 SASPEEVATQLKRMGAKQLSREHIAEWLQVLISEGEEIVVQAGMYAYMY--NHSAVATVS 310
Query: 356 QNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILY-KLWKDGY 414
+ VE + +RYG ++ RI+ +L + LE D++S A ++L +LWK G+
Sbjct: 311 RTRAVEKTIEERYGIESMRIYNILCEK-HYLEQDQLSKIAIAANFKATRLLINRLWKAGF 369
Query: 415 LLMEKLVVTGARQS--QFLLWKVNRQILWKHVLDEMFHAALNLSLR 458
+ + + R + LW + + +LDE H A NL R
Sbjct: 370 VQIYEAARAQDRTTGRYMHLWTADPEAGRHLILDECIHIATNLIQR 415
>gi|393906030|gb|EJD74152.1| hypothetical protein LOAG_18495 [Loa loa]
Length = 519
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 91/443 (20%), Positives = 167/443 (37%), Gaps = 87/443 (19%)
Query: 10 AVHVITNHFGDLVAKVCECLLRKG---PLTRQNVKRYTELSDEQVKNALLVLIQQNCVQA 66
V ++ +HFG + A V LL + P+ Q ++ + +++ A+++L Q +Q
Sbjct: 9 CVEILEDHFGPIAAAVGSVLLNEAVPLPVIFQRLR--NQFRIPEIRRAMVILEQHGILQ- 65
Query: 67 FTTEQPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRL 126
F + Y +IL VR A+ + + + + + ++ GRL
Sbjct: 66 --------FTQDERQRIIYSAQVIDILRLVRSARCSFVAKTLYGEIAEAICEEIISQGRL 117
Query: 127 TLKQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEGPARKK 186
T R + + V ++ ++ +L +V R P E
Sbjct: 118 TCSSCIRRVVARLE----VSINEVKTAFARLAETQFVMRYPKVESNFC------------ 161
Query: 187 GSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGEKRKHDV 246
G +K +P + ++ A +E +V K + N++ E
Sbjct: 162 GCPIFEKHPDPFIMPDVILNA------------KKLEINVDSKSRKRKNLSNEED----- 204
Query: 247 LELDECGVADEQSVVYRANFEGFIRRLR--------------HKGCIDHVRAHL------ 286
D G ++ + N+ F R LR H+ C+ +R L
Sbjct: 205 ---DPDG-----NIYWHLNYIRFERYLRDEMVVNAYESGDAVHENCVKTLRILLKISEIK 256
Query: 287 -DDGAANVLSA----MLQATSSAEKKVKTKNSVPLSLSSIYEEVIKSEAGRNMTLDHVRA 341
D AA +L+A +S E + K+ + ++L + E G +
Sbjct: 257 ADSSAAASFPISIHDVLRAANSNEVSLG-KHDIEVALRLLCES-----GGIVRKVGDSAG 310
Query: 342 SLVQLDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKD 401
L +DFEK I VES + +R A R+FRLL + G LE D + + +
Sbjct: 311 GLFVIDFEKAIATHCQRHVESAIRERLDMRAVRVFRLLMQKG-FLEEDHVEKLAMLSSTE 369
Query: 402 APKILYKLWKDGYLLMEKLVVTG 424
A K+ Y+L + G++LM+ + T
Sbjct: 370 ARKLCYQLLEQGFVLMKHVAKTN 392
>gi|194901712|ref|XP_001980395.1| GG18993 [Drosophila erecta]
gi|190652098|gb|EDV49353.1| GG18993 [Drosophila erecta]
Length = 522
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 88/482 (18%), Positives = 188/482 (39%), Gaps = 75/482 (15%)
Query: 13 VITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQP 72
++ FG +V V +CL T + T+ S ++V AL VL++ V ++Q
Sbjct: 12 ILEQCFGKVVQAVADCLFSATTRTLGQITSATKFSRKEVAFALAVLVKFRLVDFAASKQN 71
Query: 73 DGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTLKQMF 132
A +Y + +++L +R+ +++ ++ ++ + + L+ G T +
Sbjct: 72 SFLA-------EYALRREDVLCLLRYPRYVHLVQTKYGNVGASIAEELINSGSDTATGIL 124
Query: 133 DRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEGPARKKGSKSAK 192
+ +E E +S R T ++++T HYV + P LM +++ K +
Sbjct: 125 VKC-LAENENKTESPESYRNTFLQMITDHYVIK----RPELMVGDDQDENVPKFETNECD 179
Query: 193 KIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGEKRKHDVLELDEC 252
P I+ Q++ + GE D
Sbjct: 180 FFRHP-NIDLQLLA----------------------------KIQKGEATLAD------- 203
Query: 253 GVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAAN----VLSAMLQATSSAEKKV 308
A + +V+ N++ F + R +D + L + AA +L M T E+K+
Sbjct: 204 --ARDSHMVWNLNYDRFHQDFRDTIMVDAIERKLGENAAECFRFILKIMYNTTDPWERKL 261
Query: 309 KT------------KNSVPLSLSSIYEEVI----KSEAGRNMTLDHVRASLVQLDFEKII 352
+ S L L ++ I + G + + + +D E
Sbjct: 262 SNQITFVEIKQAIERKSNNLDLMKYLDQYISLLTEDSLGFFRRVGDMGGGVYVVDMEHAF 321
Query: 353 EIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKD 412
+ E V+++R+G A RIFR++ + +E + + + K+A + Y L+++
Sbjct: 322 QSLAFACAECVITERFGSKAARIFRVI-RCKVYIEQEDLQKEAMIPSKEAKSLAYNLFQE 380
Query: 413 GYLLMEKLVVTGARQS----QFLLWKVNRQILWKHVLDEMFHAALNLSLRVSYELDREKE 468
++ ++ + G + F L++V + + +LD + + N R ++E + K
Sbjct: 381 QFIHVKIIKKPGGGSNGPAKAFYLFQVKEKDTVRMLLDASYKSLYNTIERSNFEKNEHKG 440
Query: 469 LL 470
L+
Sbjct: 441 LI 442
>gi|195571401|ref|XP_002103691.1| GD18841 [Drosophila simulans]
gi|194199618|gb|EDX13194.1| GD18841 [Drosophila simulans]
Length = 522
Score = 55.8 bits (133), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 90/482 (18%), Positives = 190/482 (39%), Gaps = 75/482 (15%)
Query: 13 VITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQP 72
++ FG +V V +CL T + T+LS ++V AL VL++ V F +
Sbjct: 12 ILEQCFGKVVQAVADCLFSATTRTLGQITSATKLSRKEVAFALTVLVKFRLVD-FAASKA 70
Query: 73 DGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTLKQMF 132
+ F +Y + +++L +R+ +++ ++ ++ + + L+ G T +
Sbjct: 71 NPFL------AEYALRREDVLCLLRYPRYVHLVQTKYGNVGASISEELINSGSDTATGIL 124
Query: 133 DRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEGPARKKGSKSAK 192
+ +E E +S R T ++++T HY+ + P L+ +++ K +
Sbjct: 125 LKC-LAENENKAESPESYRNTFLEMITDHYIIK----RPELLVGDDQDENVPKFETNECD 179
Query: 193 KIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGEKRKHDVLELDEC 252
P I+ Q++ EA T E R
Sbjct: 180 FFRHP-NIDLQLLAKIQKGEA-----------------------TLAEAR---------- 205
Query: 253 GVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAAN----VLSAMLQATSSAEKKV 308
+ +V+ N + F + R +D + L + AA +L M T E+K+
Sbjct: 206 ----DSHMVWNLNHDRFHQDFRDTIMVDAIERKLGENAAECFRFILKIMYNTTDPWERKL 261
Query: 309 KT------------KNSVPLSLSSIYEEVI----KSEAGRNMTLDHVRASLVQLDFEKII 352
+ S L L ++ I + G + + + +D E
Sbjct: 262 SNQITFVEIKQAIERKSNNLDLMKYLDQYISLLTEDSLGFFRRVGDMGGGVYVVDMEHAF 321
Query: 353 EIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKD 412
E VE V+++R+G A RIFR++ + + +E + + + K+A + Y L+++
Sbjct: 322 ESLAFACVECVITERFGSKAARIFRVI-RCKKYIEQEDLQKEAMIPSKEAKSLAYNLFQE 380
Query: 413 GYLLMEKLVVTGARQS----QFLLWKVNRQILWKHVLDEMFHAALNLSLRVSYELDREKE 468
++ ++ + G + F L++V + + +LD + + N R ++E + K
Sbjct: 381 QFIHVKIIKKPGGGSNGPAKAFYLFQVREKDTVRMLLDASYKSLYNTIERSNFEKNEHKG 440
Query: 469 LL 470
L+
Sbjct: 441 LI 442
>gi|195109104|ref|XP_001999130.1| GI23238 [Drosophila mojavensis]
gi|193915724|gb|EDW14591.1| GI23238 [Drosophila mojavensis]
Length = 522
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 86/477 (18%), Positives = 188/477 (39%), Gaps = 75/477 (15%)
Query: 18 FGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQPDGFAD 77
FG +V V +CL T + T + ++V AL VLI+ V +F + + F
Sbjct: 17 FGKVVQAVADCLFSATTRTLSQIVSSTNFARKEVVLALSVLIKFRLV-SFEPSKNNPFL- 74
Query: 78 GPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTLKQMFDRAKS 137
+Y + ++++ +R+++++ ++ ++ + + LL G T + +
Sbjct: 75 -----AEYALRREDVICLLRYSRYIHLVQTKYGNVGASIAEELLNAGSETATALLLKC-L 128
Query: 138 SEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEGPARKKGSKSAKKIGEP 197
++ E ++ R+T +K+++ H++ + P L+P E++ P
Sbjct: 129 ADGENKAESAETYRDTFLKMISDHFIIKLPE----LVPGDEQDEAV-------------P 171
Query: 198 ETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGEKRKHDVLELDECGVADE 257
+ + LP N++ + + + GE L+
Sbjct: 172 KFQRNECDYFMLP----------NIDLKILAQ------IQKGEATLSKALD--------- 206
Query: 258 QSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQATSSAEKKVKTKNSVPLS 317
+ V+ N++ F + R + L + AA S +L + + K S ++
Sbjct: 207 TACVWSLNYDRFHQEFRDDIMKLAIERKLGENAAECFSFILNLVYNTTDPWQRKASNLIT 266
Query: 318 LSSIYEEVIKSEAGRNMT--LDHVRASLV------------------QLDFEKIIEIAQN 357
I +E+ + + LD +V Q+D EK E
Sbjct: 267 FVEIKQEIERKSNNLELIKYLDQYICLIVDDSLGFLRKVGDTGGGQYQVDMEKTFESLAF 326
Query: 358 EEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYL-- 415
VE+V+++R+G A RIFR++ + + +E + + + K+A + Y L+++ ++
Sbjct: 327 ACVEAVITERFGSKAARIFRVI-RFKKFIEQEDLQKEAMIPAKEAKSLAYNLFQEQFIHV 385
Query: 416 --LMEKLVVTGARQSQFLLWKVNRQILWKHVLDEMFHAALNLSLRVSYELDREKELL 470
+ + F L+++ + + +LD F + N R +YE K L+
Sbjct: 386 KVIKKPGGGGSGPAKAFYLFQIKEKDTVRMLLDNCFKSLYNTIRRSNYEKHEHKGLI 442
>gi|297818842|ref|XP_002877304.1| hypothetical protein ARALYDRAFT_905475 [Arabidopsis lyrata subsp.
lyrata]
gi|297323142|gb|EFH53563.1| hypothetical protein ARALYDRAFT_905475 [Arabidopsis lyrata subsp.
lyrata]
Length = 148
Score = 54.7 bits (130), Expect = 1e-04, Method: Composition-based stats.
Identities = 29/78 (37%), Positives = 49/78 (62%), Gaps = 1/78 (1%)
Query: 346 LDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKI 405
LDF+KII +AQ +++E+V++ + G ++ +IFR LSK L+ +I + KD
Sbjct: 9 LDFDKIITLAQKDKMEAVITDKLGDESCKIFRFLSKEQTFLQDYEIKSAMGI-GKDLQDD 67
Query: 406 LYKLWKDGYLLMEKLVVT 423
L LW +G+L ++K +VT
Sbjct: 68 LMTLWCEGFLTIQKEMVT 85
>gi|212537869|ref|XP_002149090.1| DNA directed RNA polymerase III subunit Rpc82, putative
[Talaromyces marneffei ATCC 18224]
gi|210068832|gb|EEA22923.1| DNA directed RNA polymerase III subunit Rpc82, putative
[Talaromyces marneffei ATCC 18224]
Length = 637
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/130 (21%), Positives = 66/130 (50%), Gaps = 8/130 (6%)
Query: 2 LTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQ 61
+++Y + ++ ++FGDL ++ L++ G LT ++ ++++S +Q+ +AL L+Q
Sbjct: 1 MSQYAAELCTLLVEDNFGDLFGRIYSTLVQYGRLTLFRLRDHSQVSQKQLLHALAALVQM 60
Query: 62 NCVQAFTTEQPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLL 121
+ V +T+ DGF T Y D + +R K L ++ + +++ +
Sbjct: 61 HLVYHYTSTD-DGF-------TYYEANIDGAYYLIRTGKVLEVVEERLGSYAAQVMAAIA 112
Query: 122 EHGRLTLKQM 131
HG + + ++
Sbjct: 113 YHGHIMISEL 122
Score = 43.5 bits (101), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 34/165 (20%), Positives = 80/165 (48%), Gaps = 12/165 (7%)
Query: 359 EVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLME 418
E+E +V R+G+ A R+ ++L G+L E ++ + + + +KD ++L ++ ++G++ ++
Sbjct: 474 EIERIVGIRFGKLALRVIQILLSMGKLDEK-RLQEVSLISQKDLRQVLAQMQENGFVDLQ 532
Query: 419 KLVVTGAR--QSQFLLWKVNRQILWKHVLDEMFHAALNLSLRVSYELDREKELLNLPADK 476
++ R LW + + +++L + + A R+ +E R K+ L+
Sbjct: 533 EIPKDAQRLPNRTVFLWFYDPDRVGRNLLHDTYKAMSRCIQRLRFERTRLKDFLDKTERT 592
Query: 477 RTGPLQDRY---------NRIRKVRILLESSQMKLDDAILLFHDF 512
+++Y + R+ L+ +LDD + +F DF
Sbjct: 593 DVRGDEEKYLTEAELETLRQWREKEGLMLGEIARLDDLVAVFRDF 637
>gi|213402243|ref|XP_002171894.1| DNA-directed RNA polymerase III complex subunit Rpc82
[Schizosaccharomyces japonicus yFS275]
gi|211999941|gb|EEB05601.1| DNA-directed RNA polymerase III complex subunit Rpc82
[Schizosaccharomyces japonicus yFS275]
Length = 585
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 55/258 (21%), Positives = 111/258 (43%), Gaps = 14/258 (5%)
Query: 2 LTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQ 61
+++Y + VI FG+ A VC LL G +T Q ++ T+L ++++ AL+ L++
Sbjct: 1 MSQYAVELCEVVIQEFFGECCATVCHALLNHGRMTLQTLRSRTKLPLKKLRQALVSLMRH 60
Query: 62 NCVQAFTTEQPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLL 121
+ V + + T Y + I + VR K + I+SQ Q+ + + +
Sbjct: 61 HLVLYAKV------IEHLREVTHYEAQWTEIYNFVRKGKAVYIISQRVSQEAGSIAKYIA 114
Query: 122 EHGRLTLKQMFDRAKSSEKEGNLVD--LDSLRETLVKLVTAHYVERCPASEPLLMPISEE 179
GR+ + +F K+ K+ + VD + LR + L+ +++ L+P+ ++
Sbjct: 115 TQGRVRVSDIF---KAFGKDPDAVDDETNKLRNEIYALMEKKFLDVVQPRH--LIPMFDQ 169
Query: 180 EGPARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPG 239
E R K ++ K + ++ A+ ++ + +VG K K +
Sbjct: 170 EMELRLKHTERLKSENMSDAKRNHEIQDAIQLDLAKLDAAEQ-SKEVGMKRKPIESFARP 228
Query: 240 EKRKHDVLELDECGVADE 257
KR+ DE D+
Sbjct: 229 SKRRRRAGAADETADGDD 246
>gi|260951159|ref|XP_002619876.1| hypothetical protein CLUG_01035 [Clavispora lusitaniae ATCC 42720]
gi|238847448|gb|EEQ36912.1| hypothetical protein CLUG_01035 [Clavispora lusitaniae ATCC 42720]
Length = 595
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 73/158 (46%), Gaps = 24/158 (15%)
Query: 13 VITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQP 72
V NH G+ A + L+ G LT +++ ++L+ +QVK AL+ LIQ NC+Q +
Sbjct: 22 VALNHLGETSAIIISTLISYGRLTAKDISIKSKLTLKQVKIALVSLIQLNCIQYW----- 76
Query: 73 DGFADGPKANTQYVVLFD----NILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTL 128
K N+ V + I+ + + + ++ ++ ELVQ ++E+G +T+
Sbjct: 77 -------KENSSKSVFYTFNDRGIITLLHAGDIIARIKSQYGEKAAELVQNIIENGNITV 129
Query: 129 KQMFDR-AKSSEKEGNLVDLDSLRETLVKLVTAHYVER 165
K + EK N+ LVKL ++ R
Sbjct: 130 KDFISTLSDEQEKYDNMA-------ILVKLFNDGWLHR 160
>gi|443925339|gb|ELU44196.1| RNA polymerase III subunit RPC82 helix-turn-helix domain-containing
protein [Rhizoctonia solani AG-1 IA]
Length = 821
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 55/120 (45%), Gaps = 9/120 (7%)
Query: 13 VITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQP 72
++ +HFG + KV LL +G L + R+T L V+ A++ LIQ N V
Sbjct: 318 IVHSHFGPIAGKVAGTLLNRGRLQLPTLIRFTGLKPSLVRAAVIALIQHNLVW------- 370
Query: 73 DGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTLKQMF 132
A+ + ++ + R RF K L I ++F ++ +L+HG+L L +
Sbjct: 371 --HAEDAIEGEVVEIDWEECIARQRFGKILAITKEKFGVPGQAIISIILDHGKLRLPDIL 428
>gi|384494305|gb|EIE84796.1| hypothetical protein RO3G_09506 [Rhizopus delemar RA 99-880]
Length = 376
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 51/202 (25%), Positives = 97/202 (48%), Gaps = 12/202 (5%)
Query: 322 YEEVIKSE-AGRNMTLDHVRASLVQLDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLS 380
Y +++K++ AG T D + + ++FEK+ + E+ +++RYGR RI R+L
Sbjct: 176 YVKLLKTDTAGFLTTKDQLGPNHYAVNFEKLRYNMKKRLFENSITERYGRAVCRIVRILL 235
Query: 381 KSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTGARQS--QFLLWKVNRQ 438
G++ E+ +I + + KD + L L+ DG + ++++ + R + F LW V +
Sbjct: 236 DKGKMDES-QIQKISMLPLKDIRQKLEMLFADGIVEIQEVPRSTDRATSRSFHLWHVPLE 294
Query: 439 ILWKHVLDEMFHAALNLSLRVSYELDREKELLNLPADKRTGPLQDRYNRIRKVRI----- 493
++ +L + + +NL R EL + LL K D N I K +
Sbjct: 295 KCFEDLLTKAYKIIVNLQQRKVEELQQRSRLLEKMNRKDVIANMDLLNEIDKAEVGNMNK 354
Query: 494 ---LLESSQMKLDDAILLFHDF 512
+E S+ +LD+ ++ DF
Sbjct: 355 IIERIEVSKARLDEMAMILRDF 376
>gi|340517829|gb|EGR48072.1| RNA polymerase III subunit [Trichoderma reesei QM6a]
Length = 638
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 63/135 (46%), Gaps = 12/135 (8%)
Query: 13 VITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQP 72
++++ +G+L +++ L KG T + YT+L Q++N L VLIQQN + T P
Sbjct: 11 LVSDLYGELPSRILAALFTKGRSTIAQLGLYTQLGPRQIRNGLGVLIQQNLLYHHTN--P 68
Query: 73 DGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTLKQM- 131
D T Y D + VRF K L ++ ++ +LVQ LL G + ++
Sbjct: 69 D------TKRTTYDANPDACYNLVRFGKILEMIESQYGTAERDLVQTLLLLGYARIAELT 122
Query: 132 ---FDRAKSSEKEGN 143
RA +S N
Sbjct: 123 HAYVSRAPTSNGHAN 137
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/178 (20%), Positives = 83/178 (46%), Gaps = 12/178 (6%)
Query: 346 LDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKI 405
+DF++++E + E++ + + +GR R+ R+L + G+L E + ++K D
Sbjct: 462 VDFDQVMERLRELELDGFIEQSFGRHGLRLTRILREKGKLDEK-MLPSAALMKKTDVQAK 520
Query: 406 LYKLWKDGYLLMEKLVVTGARQSQ--FLLWKVNRQILWKHVLDEMFHAALNLSLRVSYEL 463
+ + G + ++++ R + W +R+ H+LD+++ A + + E
Sbjct: 521 MLAMQMAGLVDIQEVPKDNTRLANRTLFFWFFDRERYQAHILDDLYKAMVRALQVLQVER 580
Query: 464 DREKELLNLPADK---------RTGPLQDRYNRIRKVRILLESSQMKLDDAILLFHDF 512
RE+ +L+ K T ++YNR + + L M+LD+ + +F D+
Sbjct: 581 HRERNILSFVERKDVMGKEEEVMTAEHYNKYNRHLEEQNKLIGQVMRLDEMVSIFRDY 638
>gi|405956637|gb|EKC23109.1| DNA-directed RNA polymerase III subunit RPC3 [Crassostrea gigas]
Length = 200
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 58/114 (50%), Gaps = 3/114 (2%)
Query: 360 VESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEK 419
+ESVV +R+G RIFR+L LE +I D + K+A +LY L+ + ++ +
Sbjct: 16 IESVVQERFGSKCLRIFRVLLLKKH-LEQKQIEDFVMISAKEAKDLLYTLFSENFITTTE 74
Query: 420 LVVT--GARQSQFLLWKVNRQILWKHVLDEMFHAALNLSLRVSYELDREKELLN 471
+ T A F L+ VN Q + VL+ + A N ++ E++ + LL+
Sbjct: 75 ISKTPDHAPSRTFFLFTVNIQHVASMVLNRCYKALYNAMVKKETEVNEHRRLLD 128
>gi|156062964|ref|XP_001597404.1| hypothetical protein SS1G_01598 [Sclerotinia sclerotiorum 1980]
gi|154696934|gb|EDN96672.1| hypothetical protein SS1G_01598 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 585
Score = 52.0 bits (123), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 73/147 (49%), Gaps = 16/147 (10%)
Query: 7 TKHAVHV----ITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQN 62
+KHAV + + + +G+L +++ LLR+G L+ +KR+T+L+ Q+K L VL++QN
Sbjct: 4 SKHAVELCSLLVDDIYGELSSRIFTILLRRGRLSMIALKRHTQLTTRQLKLGLTVLVRQN 63
Query: 63 CVQAFTTEQPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQG--L 120
V + E A+T Y D VR K L I + F E++ L
Sbjct: 64 LVYHNSDE---------GADTNYEANIDAAYALVRSGKILEIAEERFGSVAAEIMGQLVL 114
Query: 121 LEHGRLT-LKQMFDRAKSSEKEGNLVD 146
L H +++ + +++ + GN ++
Sbjct: 115 LGHAKVSDIIAELNKSHDTRANGNGIN 141
Score = 40.0 bits (92), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 20/86 (23%), Positives = 49/86 (56%), Gaps = 1/86 (1%)
Query: 346 LDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKI 405
+DFE+++E + E++S++ + +G+ +R+ R++ K G+ LE I+ V+++D+
Sbjct: 485 VDFERVVERLRELEIDSIIYENFGQIGHRLIRVMRKMGK-LEEKHIAKVALVKQQDSRTK 543
Query: 406 LYKLWKDGYLLMEKLVVTGARQSQFL 431
L ++ G + ++++ R F
Sbjct: 544 LVEMQMHGMVDVQEVPRDAGRMIAFF 569
>gi|412990321|emb|CCO19639.1| DNA-directed RNA polymerase III subunit RPC3 [Bathycoccus prasinos]
Length = 392
Score = 52.0 bits (123), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 53/99 (53%), Gaps = 3/99 (3%)
Query: 360 VESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEK 419
+ESVV +R+G A RIFRLL + R L+ +IS+ + K +ILYKL+K Y+ +++
Sbjct: 233 IESVVHQRFGLLAKRIFRLLFINRR-LDQKEISEMAMLPIKQTREILYKLFKSEYIKIQE 291
Query: 420 LVVTG--ARQSQFLLWKVNRQILWKHVLDEMFHAALNLS 456
+ T A W V+ + + F A LN+S
Sbjct: 292 VSRTSDHAPSRTLYFWYVDLDCIRHKICQNCFQAYLNIS 330
>gi|347832925|emb|CCD48622.1| similar to DNA directed RNA polymerase III subunit Rpc82
[Botryotinia fuckeliana]
Length = 666
Score = 51.6 bits (122), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 63/127 (49%), Gaps = 16/127 (12%)
Query: 7 TKHAVHV----ITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQN 62
+KHAV + + + +G+L +++ LLR+G L +KR+T+L+ Q+K L VL++QN
Sbjct: 4 SKHAVELCSLLVDDIYGELSSRIFTILLRRGRLPMNALKRHTQLTTRQLKLGLTVLVRQN 63
Query: 63 CVQAFTTEQPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQG--L 120
V + + ++T Y D VR K L I + F E++ L
Sbjct: 64 LV----------YHNSEGSDTHYEANIDAAYALVRSGKILEIAEERFGSVAAEIMGQLVL 113
Query: 121 LEHGRLT 127
L H +++
Sbjct: 114 LGHAKIS 120
Score = 42.4 bits (98), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 36/178 (20%), Positives = 86/178 (48%), Gaps = 12/178 (6%)
Query: 346 LDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKI 405
+DFE++I+ + E++S++ + +G+ +R+ R++ K G+ LE I+ ++++D+
Sbjct: 490 VDFERVIDRLRESELDSIIYENFGQIGHRLVRVMRKMGK-LEEKHIAKLALIKQQDSRTT 548
Query: 406 LYKLWKDGYLLMEKLVVTGARQ--SQFLLWKVNRQILWKHVLDEMFHAALNLSLRVSYEL 463
L + G + ++++ R LW + + +LD + A R+ E
Sbjct: 549 LVNMQMHGMVDIQEVPRDTGRMIVRTIHLWFCDEDRVTSLLLDRTYKAMSRCLQRLDVEK 608
Query: 464 DREKELLNLPADKRTGPLQDRY------NRIRKVRILLES--SQM-KLDDAILLFHDF 512
R+ ++ L ++ + N++R++R E Q+ +LD+ + +F D+
Sbjct: 609 RRKANIIALSERTDVQGQEEAFLRPEQMNQLREIRAKEEDLLGQICRLDELVGIFQDY 666
>gi|407928158|gb|EKG21030.1| RNA polymerase III Rpc82 C -terminal [Macrophomina phaseolina MS6]
Length = 637
Score = 51.6 bits (122), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 64/138 (46%), Gaps = 11/138 (7%)
Query: 13 VITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQP 72
++ + +G+L ++V L + G LT + + +Y++LS +K+ L VLIQQ V +TTE
Sbjct: 12 LVDDLYGELSSRVFSILAKLGRLTIRGLVKYSDLSARDLKHGLAVLIQQGLVLHYTTED- 70
Query: 73 DGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTLKQMF 132
Y +D+ VR K + ++ F + LV LL G + +
Sbjct: 71 ---------EIYYEPHWDHAYSLVRAGKIVKMVEDRFGESAGGLVSNLLLLGHAKVSDLA 121
Query: 133 DRAKSSEKEGNLVDLDSL 150
D S K G VD SL
Sbjct: 122 DAYGVSSKTG-AVDAASL 138
>gi|17506119|ref|NP_491807.1| Protein C48E7.2 [Caenorhabditis elegans]
gi|351050084|emb|CCD64205.1| Protein C48E7.2 [Caenorhabditis elegans]
Length = 544
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 104/517 (20%), Positives = 200/517 (38%), Gaps = 94/517 (18%)
Query: 4 EYGTKHAVHVITNHFGDLVAKVCECLLRKG-PLTRQNVKRYTELSDEQVKNALLVLIQQN 62
+Y T+ V +I + FG +VAKV E +L++ L+ K ++S+ ++ ++ LI
Sbjct: 5 KYETQMCVIIIEDIFGKIVAKVMETILKESCQLSTLFYKLKGQISNTLIRKSVSTLIN-- 62
Query: 63 CVQAFTTEQPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLE 122
F T D T YV D I H + + I + + L+
Sbjct: 63 --FGFVTFHLD-----TNNRTTYVADSDQIQHVISSPRACLIAKTLYGPAAESICVELIS 115
Query: 123 HGRLTLKQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEGP 182
GRLT+ + R +++++ D ++++ +L AH++ R P+ E SE G
Sbjct: 116 QGRLTVSETIRRIQATDETAVFSD---IKKSFEELAAAHFLIRVPSVE------SEIHGC 166
Query: 183 ARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGEKR 242
Q V P F++ TN+ + +KE S + + R
Sbjct: 167 P-------------------QFVTNFDP-----FAISTNI---MEKKEGTSTSDSTSNNR 199
Query: 243 KHDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSA------ 296
K E G A + +R N+ F LR + ID++ G L+
Sbjct: 200 KRKADSTPEDGDAGQ---YWRINWIRFNGYLRDELIIDYLIGGGSKGTMTNLNVKKEETI 256
Query: 297 ----------MLQATSSAEKKVKTKNSVPLSLSSIYEEV-----IKSEAGRNMT------ 335
+ Q + K+ + P+S+ SI + + E G N+
Sbjct: 257 EDPQGDRTQYITQNVAHLMFKINETRAKPMSMESITASLTDLQRLVKENGLNLAKPDIEL 316
Query: 336 ---------------LDHVRASLVQLDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLS 380
L + +D + I ES++ +++ A R+ RLL
Sbjct: 317 ACQILVDESDGIIRKLGESNGGIFIVDIRRAIRQICRHHCESLIREQFEGRAIRVMRLL- 375
Query: 381 KSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTGARQS--QFLLWKVNRQ 438
++ L+ +++ + + K+A ++LY L ++GY+ + + + Q F L+ V+
Sbjct: 376 ENRHYLDEEQVEKLSMMSGKEAREMLYALVEEGYVFNKPVGRSNDFQPARTFYLYYVDLP 435
Query: 439 ILWKHVLDEMFHAALNLSLRVSYELDREKELLNLPAD 475
+ +++ NL +R +E K +L+ A+
Sbjct: 436 RTIRGLVEYTCKLVRNLIVRQRHERTENKSVLDKDAN 472
>gi|126134279|ref|XP_001383664.1| subunit of RNA polymerase III (C) [Scheffersomyces stipitis CBS
6054]
gi|206558138|sp|A3LQX9.1|RPC3_PICST RecName: Full=DNA-directed RNA polymerase III subunit RPC3;
Short=RNA polymerase III subunit C3
gi|126095813|gb|ABN65635.1| subunit of RNA polymerase III (C) [Scheffersomyces stipitis CBS
6054]
Length = 599
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 72/152 (47%), Gaps = 18/152 (11%)
Query: 16 NHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQPDGF 75
NH GD+ A + CL+ G LT ++ T++ ++VK+AL+ LIQ NC+ F
Sbjct: 26 NHLGDVAALIISCLISYGRLTATDISHRTKIPVKKVKSALVSLIQMNCI----------F 75
Query: 76 ADGPKANTQYVVLFD--NILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTLKQMFD 133
+ Q F+ IL + ++ ++ + + E+VQ +L +G + ++ +
Sbjct: 76 YWRESGSKQVFYSFNETGILVFLHSGDIISHVTTHYGEDSAEIVQNILVNGHIRIEDYVN 135
Query: 134 RAKSSEKEGNLVDLDSLRETLVKLVTAHYVER 165
EK+ +D+ +L +L T ++ R
Sbjct: 136 NIDDEEKK---LDIQTL---FFRLFTDRWIVR 161
>gi|312377081|gb|EFR23998.1| hypothetical protein AND_11727 [Anopheles darlingi]
Length = 505
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 68/127 (53%), Gaps = 7/127 (5%)
Query: 349 EKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYK 408
+KI E +E+++ ++YG A RIFR++ + R +E ++I V K+A ++ YK
Sbjct: 310 KKIFEQLTWSCIENIIVEKYGSKAARIFRVI-RMKRFIEQEEIQKEAMVPAKEAKQLTYK 368
Query: 409 LWKDGYLLMEKL-----VVTGARQSQFLLWKVNRQILWKHVLDEMFHAALNLSLRVSYEL 463
L ++ +LL++ + GA +S FL + RQIL +L+ + A N R +++
Sbjct: 369 LMEENFLLIQTIRKPGGGSAGAPKSFFLFYVNQRQIL-SMLLESCYKALYNSITRSTHDK 427
Query: 464 DREKELL 470
K L+
Sbjct: 428 AVNKRLI 434
>gi|242001606|ref|XP_002435446.1| conserved hypothetical protein [Ixodes scapularis]
gi|215498782|gb|EEC08276.1| conserved hypothetical protein [Ixodes scapularis]
Length = 436
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 71/350 (20%), Positives = 129/350 (36%), Gaps = 70/350 (20%)
Query: 56 LVLIQQNCVQAFTTEQPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVE 115
+VLI N V F PK +Y++ D +L+ +R+ ++ +
Sbjct: 1 MVLIHHNIVD---------FRLHPKGYVEYIIDADRVLYMLRYPRYTHCAKTLYGDTGEL 51
Query: 116 LVQGLLEHGRL----TLKQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEP 171
+V+ LL++GR+ L+++ R + S +++R V LV H++ R PA EP
Sbjct: 52 IVEELLQNGRMCMSSVLRKVLGRLQGSHTA------EAVRSKFVDLVQTHFLCRVPAPEP 105
Query: 172 -------LLMPISEEEGPARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVES 224
+ + EE+ + K S S G T P+ SV E
Sbjct: 106 GGPDAKVPTLILLEEDMYSVPKASPSPSIAGSQPTP---------PVHLQLLSVAAEDED 156
Query: 225 DVGEKEKNSNNVTPGEKRKHDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRA 284
G K S + ++ + ++ NFE F R + +
Sbjct: 157 QEGPPSKKSRVES-----------------QPDEGIYWQVNFERFHLFFRDQLLVQAASR 199
Query: 285 HLDDGAANVLSAMLQATSSAEKKVKTKNSVPLSLSSIYEEVIKSEAGRNMTLDHVRASLV 344
L A V+ +L+ + K+ S P+S +++++ K + LD + LV
Sbjct: 200 RLGLKAGEVVRTLLR-LAETRTHPKSAQSCPVSKQEVHQQLHKEISLSQKELDSFLSLLV 258
Query: 345 Q-----------------LDFEKIIEIAQNEEVESVVSKRYGRDAYRIFR 377
+ +D + + + S V R+G + RIFR
Sbjct: 259 EDPLRLVQRSDERGGMFCVDLHRGLRVLAEAFFASTVQDRFGAKSCRIFR 308
>gi|229594701|ref|XP_001022455.2| hypothetical protein TTHERM_00989510 [Tetrahymena thermophila]
gi|225566695|gb|EAS02210.2| hypothetical protein TTHERM_00989510 [Tetrahymena thermophila
SB210]
Length = 558
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 66/342 (19%), Positives = 136/342 (39%), Gaps = 69/342 (20%)
Query: 154 LVKLVTAHYVERCPASEPLLMPISEEEGPARKKGSKSAKKIGEPETIEQQVVEAALPMEA 213
LV+ + ++++++ + + EG RK+ K+ K + + + + Q +E ALP +
Sbjct: 216 LVQQLQSYFIQKYKGEDK-----DKVEGQIRKQVKKTKKNLIDDDELLQNELEIALPQKE 270
Query: 214 MRFSVVTNVESDVGEKEKNSNNVTPGEKRKHDVLELDECGVADEQSVVYRANFEGFIRRL 273
+ E+++N+++ D L D A++Q + Y+ N FI
Sbjct: 271 AK-----------KEEQQNTSD---------DYLIYDP---ANKQPLSYKINVRQFIHVF 307
Query: 274 RHKGCIDHVRAHLDDGAANVLSAMLQATSSAEKKVKTKNSVPLSLSSI------------ 321
R + L A ++ ML + + K + P++L I
Sbjct: 308 RTEEISKLAEGKLSVQAKQIIKLMLDNSQRIGPAREIKTTEPMTLDQIKNLLIKAKGKDT 367
Query: 322 ----------YEEVIKSEAGRNMTLDHVRAS-LVQLDFEKIIEIAQNEEVESVVSKRYGR 370
+ V+K + G+ +++D + + ++ EKII + + +V ++Y
Sbjct: 368 QAVKDENLQNFLRVMKRDGGKFISIDFINGKEMYSVNVEKIINKMKIRHIAQIVERKYSL 427
Query: 371 DAYRIFRLLSKSGRL------------------LETDKISDTTFVEKKDAPKILYKLWKD 412
A RIFR++ K L E +KIS+ KD K L KL +
Sbjct: 428 IAGRIFRIMRKYKHLEEKAVKLILKIFVNTLNVFEINKISEIALQSLKDTQKYLNKLSTE 487
Query: 413 GYLLMEKLVVTGARQSQFLLWKVNRQILWKHVLDEMFHAALN 454
GY+ ++ + ++K + Q + +++ + LN
Sbjct: 488 GYIDYIEVKEKDKTVNLLCMYKYDEQKVLSKTIEQYYQIRLN 529
>gi|400597939|gb|EJP65663.1| RNA polymerase III subunit RPC82 [Beauveria bassiana ARSEF 2860]
Length = 642
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/178 (21%), Positives = 82/178 (46%), Gaps = 12/178 (6%)
Query: 346 LDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKI 405
+DF K++ + E+++ + + +GR R+ R+L + G+L E + ++K D
Sbjct: 466 VDFSKVLNRLKETELDAYIEQSFGRHGLRLTRILREKGKLDEK-MLPSAALMKKSDVQLK 524
Query: 406 LYKLWKDGYLLMEKLVVTGARQSQ--FLLWKVNRQILWKHVLDEMFHAALNLSLRVSYEL 463
+ + G + ++++ +R + W +R+ LD+++ A + + E
Sbjct: 525 MIAMQMAGLVDVQEVPKDNSRMANRTLFFWFFDRERTESQALDDIYKAMVRCLQTMQVER 584
Query: 464 DREKELLNLPADK---------RTGPLQDRYNRIRKVRILLESSQMKLDDAILLFHDF 512
RE+ +L+ K T D+YN+ KV+ L M+LD+ + +F D+
Sbjct: 585 HRERNILSFVERKDVQGKEEEVMTSEHYDKYNKHLKVQEKLLGQVMRLDEMVAIFRDY 642
Score = 46.6 bits (109), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 81/176 (46%), Gaps = 27/176 (15%)
Query: 7 TKHAVHV----ITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQN 62
TKHA + + + +G+L +++ LL KG T + ++T L ++N L VL+QQN
Sbjct: 4 TKHAAELCALLVNDLYGELPSRILSALLTKGRSTIAQLAQHTSLPPRFLRNGLSVLVQQN 63
Query: 63 CVQAFTTEQPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLE 122
+ T D T Y D + VR K L + ++ +LVQ LL+
Sbjct: 64 LLFHHT--------DSDSRGTSYEANSDACYNLVRSGKILEAIESQYGTAERDLVQTLLQ 115
Query: 123 HG--RLT-LKQMFDRAKSSEKEGN----------LVDLDS-LRETLVKLVTAHYVE 164
G R+ L Q F + ++S+ G+ L++ +S L L +L+ A VE
Sbjct: 116 LGFARIADLTQAF-KGRTSKTNGHTNGSTEMASGLIESESHLNAVLGRLIQAEIVE 170
>gi|242808055|ref|XP_002485084.1| DNA directed RNA polymerase III subunit Rpc82, putative
[Talaromyces stipitatus ATCC 10500]
gi|218715709|gb|EED15131.1| DNA directed RNA polymerase III subunit Rpc82, putative
[Talaromyces stipitatus ATCC 10500]
Length = 634
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/130 (20%), Positives = 63/130 (48%), Gaps = 8/130 (6%)
Query: 2 LTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQ 61
+++Y + ++ ++FGDL ++ L++ G L+ ++ +++++ +Q+ +AL L+Q
Sbjct: 1 MSQYAAELCTLLVEDNFGDLFGRIYSTLVQYGRLSLLRLREHSKVTHKQLLHALAALVQM 60
Query: 62 NCVQAFTTEQPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLL 121
+ V FT+ DGF T Y D + +R K L ++ ++ +
Sbjct: 61 HLVHHFTS-IDDGF-------TYYEANVDGAYYLIRMGKILEVVEDRLGSYAARVMSAIA 112
Query: 122 EHGRLTLKQM 131
HG + + +
Sbjct: 113 YHGHIMISDL 122
Score = 46.2 bits (108), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 36/165 (21%), Positives = 81/165 (49%), Gaps = 12/165 (7%)
Query: 359 EVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLME 418
E+E +V R+G+ A R+ R+L G+L E ++ + + + +KD ++L ++ ++G++ ++
Sbjct: 471 EIERIVGIRFGKLALRVIRILLSVGKLDEK-RLQEVSLIAQKDLRQVLAQMQENGFVDLQ 529
Query: 419 KLVVTGAR--QSQFLLWKVNRQILWKHVLDEMFHAALNLSLRVSYELDREKELLNLPADK 476
++ R LW + + ++VL +++ A R+ +E +R K+ L+
Sbjct: 530 EIPKDAQRIPNRTVYLWFYDPDRVGRNVLHDIYKAMSRCLQRLRFERNRLKDFLDKTERI 589
Query: 477 RTGPLQDRY---------NRIRKVRILLESSQMKLDDAILLFHDF 512
++ Y + R+ L+ +LDD + +F DF
Sbjct: 590 DVRGNEEEYLTEAELETLRQWREKEALMLGEISRLDDLVAVFRDF 634
>gi|384496944|gb|EIE87435.1| hypothetical protein RO3G_12146 [Rhizopus delemar RA 99-880]
Length = 379
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 61/300 (20%), Positives = 123/300 (41%), Gaps = 48/300 (16%)
Query: 260 VVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQATSSAEKKVKTKNS---VPL 316
+ + N++ F R+ ID ++ A ++ A + K +K ++S P+
Sbjct: 81 IFFSVNYDKFNMLFRNDAIIDFATERINRSAGQIVKAFFEYGKDKMKTLKEQDSPSATPV 140
Query: 317 SLSSIY--------------------------EEVIKS--------EAGRNMTLDHVRAS 342
++++ +E+++ AG + D A+
Sbjct: 141 HIANVVTKTDVATRGDIVLPKDPLEPNKKPSLQEIVRGYITLLKMDPAGFIKSKDERGAN 200
Query: 343 LVQLDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDA 402
++FEK+ + +E +V +RYG R+F++L + G+L E+ +I + KD
Sbjct: 201 HYAVNFEKLRNTMKRRIIEGLVRERYGVATCRVFKILIEKGKLDES-QIQKLAMLPAKDT 259
Query: 403 PKILYKLWKDGYLLMEKLVVTGARQSQ--FLLWKVNRQILWKHVLDEMFHAALNLSLRVS 460
+ L L G++ ++++ T R F LW V + ++ VL + + NL R
Sbjct: 260 REKLALLKTKGFVEIQEVPRTADRAPGRCFHLWYVPLEKCYQEVLVDSYRIICNLQQRKR 319
Query: 461 YELDREKELLNLPADKRTGPLQD--------RYNRIRKVRILLESSQMKLDDAILLFHDF 512
EL K L++ A K D ++ KV LE ++ ++D +++ DF
Sbjct: 320 QELKLRKRLVDKIARKDVMENPDLLGEGEKKEIEQMNKVFERLEVAKSRVDLVVMILRDF 379
>gi|302927138|ref|XP_003054435.1| hypothetical protein NECHADRAFT_75140 [Nectria haematococca mpVI
77-13-4]
gi|256735376|gb|EEU48722.1| hypothetical protein NECHADRAFT_75140 [Nectria haematococca mpVI
77-13-4]
Length = 662
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 82/175 (46%), Gaps = 25/175 (14%)
Query: 7 TKHAVHV----ITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQN 62
TKHA + + + +G+L +++ LL KG T + ++T L+ ++N L VLIQQN
Sbjct: 25 TKHAAELCALLVNDLYGELPSRILIALLTKGRSTISQLVQHTALTPRFLRNGLAVLIQQN 84
Query: 63 CVQAFTTEQPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQG--L 120
+ T PD +AN D + VR K L I+ +++ EL Q L
Sbjct: 85 LLYHHT--DPDTDVTSYQANA------DACYNLVRSGKILDIIERQYGTAERELAQTLML 136
Query: 121 LEHGRLT-LKQMF-DRAKSSEKEGN--------LVDLDS-LRETLVKLVTAHYVE 164
L H R+ L F RA + + N L++ +S L LV+L+ A VE
Sbjct: 137 LGHARIADLSHAFGSRAPKTNGQTNGDHESHDGLIESESHLNSVLVRLIRAEIVE 191
Score = 38.5 bits (88), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 31/178 (17%), Positives = 81/178 (45%), Gaps = 12/178 (6%)
Query: 346 LDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKI 405
+DF +++ + E+++++ + +GR R+ R+L + G+L E + ++K D
Sbjct: 486 VDFTRLMTHLRETELDAIIEQSHGRHGLRLTRILREKGKLDEK-MLPSAALMKKTDVQGK 544
Query: 406 LYKLWKDGYLLMEKLVVTGARQSQ--FLLWKVNRQILWKHVLDEMFHAALNLSLRVSYEL 463
+ + G + ++++ +R + W +++ LD+++ A L + E
Sbjct: 545 MLAMQMAGIVDVQEVPKDSSRLANRTLFFWYFDKERAQTQALDDIYKAMLRCMQTLQVER 604
Query: 464 DREKELLNL---------PADKRTGPLQDRYNRIRKVRILLESSQMKLDDAILLFHDF 512
++ +L+ + T ++YN+ +V+ L M+LD+ + + D+
Sbjct: 605 HNQRNILSFVEREDVQGKEEEVMTTEHYNKYNKHLEVQSKLLGQVMRLDELVSVLRDY 662
>gi|71028552|ref|XP_763919.1| hypothetical protein [Theileria parva strain Muguga]
gi|68350873|gb|EAN31636.1| hypothetical protein TP04_0284 [Theileria parva]
Length = 429
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/175 (24%), Positives = 88/175 (50%), Gaps = 16/175 (9%)
Query: 10 AVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTT 69
++VI +FG L ++V LL +GP++ + T+ + + V+NAL++LI+ V+ +
Sbjct: 9 VLYVIEYYFGRLTSRVTSQLLLRGPISLYKLVNPTKFNFKVVRNALVILIRHGIVE-YNL 67
Query: 70 EQPDGFADGPKANTQ--YVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLT 127
E + GP+ T Y V +N L L Q+ D C +++ + ++G +
Sbjct: 68 ETS---SSGPRLVTHVLYSVNINNALSLFIVPLILLNCKQQLDDNCYDVLLHISKYGITS 124
Query: 128 LKQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEGP 182
K++ +S + G+ V + L KL+ +H++ + + L+ ++++GP
Sbjct: 125 QKKI---KESFPELGDYV----ISNCLSKLINSHFIVAVESFDHLM---NKQQGP 169
>gi|322696531|gb|EFY88322.1| RNA polymerase III subunit RPC82 [Metarhizium acridum CQMa 102]
Length = 653
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 58/122 (47%), Gaps = 12/122 (9%)
Query: 7 TKHAVHV----ITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQN 62
TKHA + + + FG+L +++ L KG T + ++ L ++N L VLIQQN
Sbjct: 4 TKHAAELCALLVNDLFGELPSRILVALFTKGRCTLAQLVQHVSLGPRHLRNGLGVLIQQN 63
Query: 63 CVQAFTTEQPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLE 122
+ +T PD T Y D + VR K L +++ ++ +LVQ L++
Sbjct: 64 LLYHYT--DPD------TGGTNYEANSDACYNLVRSGKILEVINSQYGTAERDLVQTLMQ 115
Query: 123 HG 124
G
Sbjct: 116 LG 117
Score = 44.3 bits (103), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 35/178 (19%), Positives = 81/178 (45%), Gaps = 12/178 (6%)
Query: 346 LDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKI 405
+DFE +++ + E+++ + + +GR R+ R+L + G+L E + ++K D
Sbjct: 477 VDFELLMDRLRESELDAYIEQSFGRHGLRLTRILREKGKLDEK-MLPSAALMKKGDVQGK 535
Query: 406 LYKLWKDGYLLMEKLVVTGARQSQ--FLLWKVNRQILWKHVLDEMFHAALNLSLRVSYEL 463
+ + G + ++++ +R + W + + + +LD+++ L + E
Sbjct: 536 MLAMQMAGLVDVQEVPKDNSRLANRTLFFWFFDGERVQSQLLDDIYKGMLRCLQTLDVER 595
Query: 464 DREKELLNLPADK---------RTGPLQDRYNRIRKVRILLESSQMKLDDAILLFHDF 512
+E+ +L K T ++YNR + + L M+LDD + +F D+
Sbjct: 596 HKERNILTFVERKDVKGKEEEVMTAEHYNKYNRHLEGQQKLLGQVMRLDDMVAVFRDY 653
>gi|361126875|gb|EHK98861.1| putative DNA-directed RNA polymerase III subunit RPC-3 [Glarea
lozoyensis 74030]
Length = 616
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 59/124 (47%), Gaps = 8/124 (6%)
Query: 18 FGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQPDGFAD 77
+G+L +++ LLR+G L + R+T L+ +Q+++ L+VL+QQN + T D
Sbjct: 19 YGELASRIFTILLRRGRLPIPTLARHTRLTPKQLRHGLVVLVQQNLIYHHT--------D 70
Query: 78 GPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTLKQMFDRAKS 137
T Y ++ +R K ++ + E+V LL G + + D ++
Sbjct: 71 SVTGVTHYEANYNAAYALLRSGKIMSFVETRHGVLAREIVHNLLLLGHTKISDLLDAYEA 130
Query: 138 SEKE 141
+KE
Sbjct: 131 QKKE 134
>gi|389638242|ref|XP_003716754.1| hypothetical protein MGG_03225 [Magnaporthe oryzae 70-15]
gi|351642573|gb|EHA50435.1| hypothetical protein MGG_03225 [Magnaporthe oryzae 70-15]
gi|440465153|gb|ELQ34493.1| RNA polymerase III subunit Rpc82 [Magnaporthe oryzae Y34]
gi|440489696|gb|ELQ69325.1| RNA polymerase III subunit Rpc82 [Magnaporthe oryzae P131]
Length = 667
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 52/253 (20%), Positives = 111/253 (43%), Gaps = 31/253 (12%)
Query: 289 GAANVLSAMLQATSSAEKKVKTKNSVPLSLSSIYEEVIKSEAGRNMTLDHVRASLVQL-- 346
G AN +S +++ +K + + S P + + + E +K + + L +R L+ L
Sbjct: 417 GGANGIS-VIEYDEELDKLLHRQQSAPPTTNGMKESKVKFKEPKESRLSQMRQHLLLLCE 475
Query: 347 ----------------DFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDK 390
DFE ++ Q E+++V+ + GR + R+ R++ K G++ E
Sbjct: 476 SSQGFLRHCGNGQWTVDFEPLVRRLQETELDTVLERTVGRHSLRLIRIVRKRGKVDEK-S 534
Query: 391 ISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTGAR--QSQFLLWKVNRQILWKHVLDEM 448
+ + + K KI+ ++ G++ ++++ R +S LW + + +LD
Sbjct: 535 LPNQAMMSKGTVHKIMLEMQMHGFVDVQEVPKDSTRNAKSTIFLWFCHTESSLSQLLDNT 594
Query: 449 FHAALN-LSLRVSYELDREKELLNLPADKRTGPLQ--------DRYNRIRKVRILLESSQ 499
+ L L +R + + + L + G Q DRY++ R++ + +
Sbjct: 595 YKTMLRCLQVREVHRQNAREVLRFVERPDIKGREQEALEKKYFDRYDQYRRIEDKILAHV 654
Query: 500 MKLDDAILLFHDF 512
M+LDD I + D+
Sbjct: 655 MRLDDIISILRDY 667
>gi|67592886|ref|XP_665677.1| hypothetical protein [Cryptosporidium hominis TU502]
gi|54656471|gb|EAL35447.1| hypothetical protein Chro.40024 [Cryptosporidium hominis]
Length = 618
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/133 (22%), Positives = 63/133 (47%), Gaps = 16/133 (12%)
Query: 13 VITNHFGDLVAKVCECLLRKGPLT-----------RQNVKRYTELSDEQV---KNALLVL 58
+I+ HFG L A + + LL GPL +++ K + S + +N+++ L
Sbjct: 11 IISTHFGGLPAMIIKKLLVNGPLPMDRLYHLVIKDKESSKYLSSNSKDNFLSFRNSMMYL 70
Query: 59 IQQNCVQAFTTEQPDGFADGPK--ANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVEL 116
+ C+ + P+ D K N + V D+++ R+RF ++ + + + C +
Sbjct: 71 VHHYCIIYYEISDPNIELDNSKEGKNVVFEVNIDHVISRLRFPLYMAHIEKLLGETCKYI 130
Query: 117 VQGLLEHGRLTLK 129
+++HGR++ K
Sbjct: 131 FMEVIKHGRISTK 143
>gi|158291041|ref|XP_312561.3| AGAP002394-PA [Anopheles gambiae str. PEST]
gi|157018184|gb|EAA08103.3| AGAP002394-PA [Anopheles gambiae str. PEST]
Length = 506
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/162 (23%), Positives = 76/162 (46%), Gaps = 14/162 (8%)
Query: 13 VITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQP 72
+I HFG++V V + L + R T L+ +V +L +LI+ N V
Sbjct: 12 IIEQHFGEVVRTVVDDLFASIAKPLSQIIRSTGLTKSEVCKSLAILIKFNMV-------- 63
Query: 73 DGFA-DGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTLKQM 131
GF+ + + +Y + +D I+ +R+ +++ ++ +F + L++ LL G +
Sbjct: 64 -GFSLNKARTGYEYRLHYDRIVMVLRYPRYVHLIQTKFGHESAVLMEELLRSGTQCASYI 122
Query: 132 FDRAKSS--EKEGNLVDLDSLRETLVKLVTAHYVERCPASEP 171
++ S+ K+ N + L LR+ L +Y+ R P +P
Sbjct: 123 IVKSMSNVDGKDNNTLAL--LRDKFADLAQENYITRAPEPKP 162
Score = 44.7 bits (104), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 59/115 (51%), Gaps = 5/115 (4%)
Query: 360 VESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEK 419
+E+++ ++YG A RIFR++ + + +E + I V KDA + YKL ++ +L ++
Sbjct: 323 IENIIVEKYGSKAARIFRVV-RMKKYVEQEDIQKEAMVPAKDAKLLTYKLLEENFLQIQT 381
Query: 420 LVVTGARQS----QFLLWKVNRQILWKHVLDEMFHAALNLSLRVSYELDREKELL 470
G S F L+ VN+ + +L+ + A N R++++ K L+
Sbjct: 382 FRKPGGGNSGAPKSFFLFYVNQPQIVSMLLELSYKALYNSITRLTHDKTVNKRLI 436
>gi|388853668|emb|CCF52636.1| uncharacterized protein [Ustilago hordei]
Length = 709
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 43/199 (21%), Positives = 78/199 (39%), Gaps = 62/199 (31%)
Query: 12 HVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQ--------------------- 50
HV+ HFG + A+V LL++G L + ++R+ + +
Sbjct: 16 HVLLQHFGPIAARVGALLLKRGRLNIREIQRFLNQAPTRTNRGPTDPFSNASTTHSKPTL 75
Query: 51 ---------------------------VKNALLVLIQQNCVQAFTTEQPDGFADGPKANT 83
V+ ++ LIQ C +T+ P+ AD N
Sbjct: 76 VSAPIAGASSSHNTGDPNAPVPVPKLLVEQTVMTLIQHGCAWHSSTD-PE-LAD---PNE 130
Query: 84 QYV-VLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTLKQMFDRAKSSEKEG 142
++ + + +L R+RF K++ I QE +V+ +L+HG+L + DR S
Sbjct: 131 EFFEINVNQVLLRLRFGKYIGIAEQELGDTAARIVKLVLQHGKLQASDIIDRTAS----- 185
Query: 143 NLVDLDSLRETLVKLVTAH 161
D+D+ R+ + AH
Sbjct: 186 ---DMDTQRKASLAAAQAH 201
Score = 41.6 bits (96), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 63/132 (47%), Gaps = 3/132 (2%)
Query: 341 ASLVQLDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKK 400
AS + ++F + E + + + +V+ +++G A RI +L + G+ LE IS V
Sbjct: 518 ASSLTIEFSNVAERMRRDLLRNVIEEKFGTAAIRIMNILREKGK-LEEKHISKLALVSIS 576
Query: 401 DAPKILYKLWKDGYLLMEKLVVTGARQS--QFLLWKVNRQILWKHVLDEMFHAALNLSLR 458
+ + +L+ L ++++ T R F LW V+ +LD ++ + L R
Sbjct: 577 ETRDLCSRLFHASLLGLQEVPKTKDRDPAKTFFLWFVDEAKCRAWLLDHLYQSLARLGQR 636
Query: 459 VSYELDREKELL 470
+ E+ R+ LL
Sbjct: 637 RNEEMRRQLTLL 648
>gi|440631806|gb|ELR01725.1| hypothetical protein GMDG_00101 [Geomyces destructans 20631-21]
Length = 639
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 62/126 (49%), Gaps = 8/126 (6%)
Query: 18 FGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQPDGFAD 77
+G+L +++ L R+G T +K++T L+ QV++ L+VLIQQN + TEQ G
Sbjct: 19 YGELTSRIFAILQRRGRQTINTIKQHTGLTGRQVRHGLVVLIQQNLL-FHNTEQESG--- 74
Query: 78 GPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTLKQMFDRAKS 137
+T Y D+ +R + L + + + ++VQ LL G + + + +S
Sbjct: 75 ----STFYEANEDSAYFLLRSGRILETVEERYGVDARDVVQNLLLLGHTKVADLAEAYES 130
Query: 138 SEKEGN 143
K N
Sbjct: 131 KNKTTN 136
>gi|19115041|ref|NP_594129.1| DNA-directed RNA polymerase III complex subunit Rpc82 (predicted)
[Schizosaccharomyces pombe 972h-]
gi|74623716|sp|Q9C106.1|RPC3_SCHPO RecName: Full=DNA-directed RNA polymerase III subunit rpc3;
Short=RNA polymerase III subunit C3; AltName: Full=RNA
polymerase III subunit C82
gi|13624758|emb|CAC36920.1| DNA-directed RNA polymerase III complex subunit Rpc82 (predicted)
[Schizosaccharomyces pombe]
gi|76782165|gb|ABA54853.1| RNA polymerase III subunit Rpc82 [Schizosaccharomyces pombe]
Length = 591
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 61/321 (19%), Positives = 136/321 (42%), Gaps = 28/321 (8%)
Query: 2 LTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQ 61
+++Y + ++ FGD + V LLR G LT +++ T L +++ AL+ L+Q
Sbjct: 1 MSQYAVELCEILVEEFFGDCCSAVASALLRHGRLTIPMLQKRTSLPGPKIRQALVSLMQH 60
Query: 62 NCVQAFTTEQPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLL 121
+ V T + + T Y + I + +R K + ++SQ+ +Q+ +V+ L
Sbjct: 61 HMVLYVTV------IENVREVTYYETQWKEIYNILRKGKDVYLISQKLNQEAASVVKYLS 114
Query: 122 EHGRLTLKQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEG 181
GR + ++F+ A + +G+ + +++ L +L+ ++ L+P+ ++E
Sbjct: 115 TQGRARVLEVFN-AFDKKVDGSDEESRMMQKNLTELIYQKFL--LVVQPRHLIPVGDQEM 171
Query: 182 PARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGEK 241
R K K E + + V+ ++ +E + E ++ + P ++
Sbjct: 172 QLRIKHLDRRKSENVSEIKKNREVDDSVALEMLELRAADMSELQGLTRKPKESIPHPTKR 231
Query: 242 RKHDV-----LELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSA 296
RK V + D + D+ + + + +R ++ G +VLS
Sbjct: 232 RKRAVGSAPSVSTDLNNILDDDNSILVPDLSAHVR--------------INSGKLSVLSK 277
Query: 297 MLQATSSAEKKVKTKNSVPLS 317
+ T E+++ S+ S
Sbjct: 278 NARLTHWVERRIGKSTSLVYS 298
Score = 41.6 bits (96), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 35/179 (19%), Positives = 90/179 (50%), Gaps = 16/179 (8%)
Query: 346 LDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKI 405
++F + ++ + E E+ + +++G A R+ R++ G++ E ++++ + ++D +
Sbjct: 414 VNFTHLTDMLRAIEYENFIEQKFGERAIRLLRIIKDKGKI-EEKQLANIALLRQRDLRTV 472
Query: 406 LYKLWKDGYLLMEKLVVTGAR--QSQFLLWKVNRQILWKHVLDEMFHAALNLSLRV---- 459
L + + G L ++++ + R F LW + +LDE++H L +R+
Sbjct: 473 LQAMAEIGALELQEVPRSSDRAPSKTFFLWFHRPDRAYSLLLDELYHVIARLYMRLRDAR 532
Query: 460 --SYELDREKELLNLPADKRTGPLQDRYNRIRKV-----RILLESSQMKLDDAILLFHD 511
+L + E +++ ++ + ++K+ ++LL++S +LDD +L+F D
Sbjct: 533 AQRAQLIEKAERIDIKGNEEQYLQKFEQAELKKLYSYEEKLLLQAS--RLDDMVLVFRD 589
>gi|399218957|emb|CCF75844.1| unnamed protein product [Babesia microti strain RI]
Length = 978
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 60/118 (50%), Gaps = 5/118 (4%)
Query: 13 VITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQP 72
VI + +VA V + L+ P T ++ RYT++ + KNAL++L+ + V+ T P
Sbjct: 513 VIARQYNSVVASVAKYLMLNSPSTLYSISRYTKIELNETKNALILLVLHDIVRPDTRVHP 572
Query: 73 DGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTLKQ 130
D Y VL +NIL+R+ LT++ + + +L+ ++G L L++
Sbjct: 573 D-----TGTQVYYTVLLENILNRLLLPVVLTVVGHVYSKIHSQLLLQFAKYGYLCLEK 625
>gi|156848460|ref|XP_001647112.1| hypothetical protein Kpol_1050p114 [Vanderwaltozyma polyspora DSM
70294]
gi|156117795|gb|EDO19254.1| hypothetical protein Kpol_1050p114 [Vanderwaltozyma polyspora DSM
70294]
Length = 638
Score = 48.5 bits (114), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 74/171 (43%), Gaps = 21/171 (12%)
Query: 13 VITNHFGDLVAKVCECLLRKGPLT----RQNVKRYTELSDEQVKNALLVLIQQNCVQAFT 68
+ +H G+ A + L+ KG L +NV+ E+ + +K L+ LIQ C++ +T
Sbjct: 45 IAKSHLGERAAIIIGVLIAKGRLNINELNENVR---EMDRKSIKTTLVCLIQLRCIKYYT 101
Query: 69 TEQPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQ-CVELVQGLLEHGRLT 127
G K+ T Y D IL + L ++ F +++Q +L G +T
Sbjct: 102 ETTYSG-----KSITHYYFNEDGILLWLYSGLILEEINSRFQSSIAAQIIQNILSIGSIT 156
Query: 128 LKQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISE 178
+ Q KS+E++ D + VKL Y+ P E L PI +
Sbjct: 157 VNQYVSNIKSNEEK------DEVYSAFVKLCENGYI--VPIKEIHLSPIGD 199
>gi|196001967|ref|XP_002110851.1| hypothetical protein TRIADDRAFT_54190 [Trichoplax adhaerens]
gi|190586802|gb|EDV26855.1| hypothetical protein TRIADDRAFT_54190 [Trichoplax adhaerens]
Length = 512
Score = 48.1 bits (113), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 107/484 (22%), Positives = 193/484 (39%), Gaps = 104/484 (21%)
Query: 18 FGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQPDGFAD 77
FG++V V CL +KG +++ + ++LS ++VKN+L +L+Q + + +T +G+
Sbjct: 47 FGEVVEHVVSCLAQKGGAPLRDIIQRSKLSKDEVKNSLCILLQHDLID-YTLSNTNGYL- 104
Query: 78 GPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTLKQMFDRAKS 137
Y + D IL R+ +++ F +V+ +L +G++ ++ D+ KS
Sbjct: 105 -------YRLKIDRILLCNRYPRYIYASKFLFGDIAELIVEEILLNGQIIKNELLDQIKS 157
Query: 138 S-----EKEGNLVD-------LDSL-RETLV------KLVTAHYVERCPASEPLLMPISE 178
EK+ D D L R + +++ VE+ P
Sbjct: 158 RLADIVEKDNTPPDPTEVDTAFDELARNNFIIEVGGGRMLVKSEVEQVDKMTPTTNNKPS 217
Query: 179 EEGPARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTP 238
EE KKG+K + E I V L +E G E N +
Sbjct: 218 EEVSTPKKGNKRQRS----EDIPSAPVSKRLHLEE-------------GTNEINYMMIVE 260
Query: 239 GEKRKHD---------VLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDG 289
+K+D +LELD E ++ A RL+ +++HL
Sbjct: 261 VIGKKYDSIAAAIMRSMLELD--ANPQESDIITNA------VRLK------EIKSHL-PK 305
Query: 290 AANVLSAMLQATSSAEKKVKTKNSVPLSLSSIYEEVIKSEAGRNMTLDHVRASLVQLDFE 349
NV ++L+ + + K N+ + I+ E++K TL+ LVQ F
Sbjct: 306 EVNVTKSILEEYLTILYEDKQLNTGDPDILHIFSEIVKR------TLE----CLVQQRF- 354
Query: 350 KIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKL 409
+GR IFR++ + LE KI D + KDA ILY L
Sbjct: 355 ---------------GSNFGR----IFRIIVHK-KSLEQKKICDMAMLPSKDAKAILYTL 394
Query: 410 WKDGYLLMEKL--VVTGARQSQFLLWKVNRQILWKHVLDEMFHAALNLSLRVSYEL--DR 465
+ ++ M+++ + F L+ ++ VL + A N +R +E+ +R
Sbjct: 395 MVEKFIRMQEIPRSLDCVASKTFHLFSLDILDTCTVVLSRSYKAIANSIIRRDWEVNSNR 454
Query: 466 EKEL 469
++E+
Sbjct: 455 QREM 458
>gi|342883381|gb|EGU83894.1| hypothetical protein FOXB_05608 [Fusarium oxysporum Fo5176]
Length = 633
Score = 48.1 bits (113), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 78/175 (44%), Gaps = 25/175 (14%)
Query: 7 TKHAVHV----ITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQN 62
TKHA + + + G+L +++ LL KG T + ++T L+ ++N + VLIQQN
Sbjct: 4 TKHAAELCALLVNDLHGELPSRILNALLTKGRSTIAQLAQHTSLTPRYLRNGIAVLIQQN 63
Query: 63 CVQAFTTEQPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLE 122
+ T D T Y D + VR K L ++ ++ EL Q L++
Sbjct: 64 LLYHHTDANTD--------ITYYQADADACYNLVRSGKILNVIENQYGIAERELAQTLMQ 115
Query: 123 --HGRLT-LKQMF-DRAKSSEKEGN--------LVDLDS-LRETLVKLVTAHYVE 164
H R+ L Q F RA N L++ +S L LV+L+ A VE
Sbjct: 116 LGHARIADLSQAFGSRAPKLNGHTNGEHKTHDGLIESESHLNSVLVRLIRAEIVE 170
Score = 41.6 bits (96), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 34/178 (19%), Positives = 81/178 (45%), Gaps = 12/178 (6%)
Query: 346 LDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKI 405
+DF +++ + E+++++ + +GR R+ R+L + G+L E + ++K D
Sbjct: 457 VDFSRLVGKLREIELDAIIEQSHGRHGLRLTRILREKGKLDEK-MLPAAALMKKGDVQGK 515
Query: 406 LYKLWKDGYLLMEKLVVTGARQSQ--FLLWKVNRQILWKHVLDEMFHAALNLSLRVSYEL 463
+ + G + ++++ +R + W +++ LD+++ A L + E
Sbjct: 516 MLAMQMAGIVDVQEVPKDSSRLANRTLFFWYFDKERTQTQALDDIYKAMLRCLQTLEVER 575
Query: 464 DREKELLNLPADK---------RTGPLQDRYNRIRKVRILLESSQMKLDDAILLFHDF 512
+E+ +L+ K T ++YNR V+ L M+LD+ + + D+
Sbjct: 576 HKERNILSFVERKDVQGKEEEVMTAEHYNKYNRHLGVQDKLLGQVMRLDELVSVLRDY 633
>gi|170575484|ref|XP_001893264.1| hypothetical protein Bm1_08965 [Brugia malayi]
gi|158600845|gb|EDP37905.1| hypothetical protein Bm1_08965 [Brugia malayi]
Length = 228
Score = 48.1 bits (113), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 44/84 (52%), Gaps = 1/84 (1%)
Query: 341 ASLVQLDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKK 400
L +DFEK I + VES + ++ A R+FRLL + G LE D + +
Sbjct: 49 GGLFVVDFEKAIAMHCQRHVESAIREKLDVRAVRVFRLLMQKG-FLEEDHVEKLAMLSST 107
Query: 401 DAPKILYKLWKDGYLLMEKLVVTG 424
+A K+ Y+L + G++LM+ + T
Sbjct: 108 EARKLCYQLLEKGFVLMKHVAKTN 131
>gi|402591885|gb|EJW85814.1| hypothetical protein WUBG_03275, partial [Wuchereria bancrofti]
Length = 383
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 63/133 (47%), Gaps = 3/133 (2%)
Query: 341 ASLVQLDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKK 400
L +DFEK I + VES + ++ A R+FRLL + G LE D + +
Sbjct: 174 GGLFVVDFEKAIAMHCQRHVESAIREKLDVRAVRVFRLLMQKG-FLEEDHVEKLAMLSST 232
Query: 401 DAPKILYKLWKDGYLLMEKLVVTG--ARQSQFLLWKVNRQILWKHVLDEMFHAALNLSLR 458
+A K+ Y+L + G++LM+ + T A L+ V+ I+ ++ N+ +R
Sbjct: 233 EARKLCYQLLEKGFVLMKHVAKTNDFAPARTIYLYYVDLNIVAHNLYLFTCKVLRNVIIR 292
Query: 459 VSYELDREKELLN 471
+E K L++
Sbjct: 293 RRHETKEHKVLID 305
>gi|358378220|gb|EHK15902.1| hypothetical protein TRIVIDRAFT_80209 [Trichoderma virens Gv29-8]
Length = 640
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 54/119 (45%), Gaps = 12/119 (10%)
Query: 7 TKHAVHV----ITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQN 62
TKHA + + + +G+L +++ L KG T + YT+L Q++N L VLIQQN
Sbjct: 4 TKHAAELCALLVNDLYGELPSRILAALFTKGRSTITQLGLYTQLGPRQIRNGLGVLIQQN 63
Query: 63 CVQAFTTEQPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLL 121
+ T D T Y + VR K L ++ ++ +LVQ LL
Sbjct: 64 LLYHHT--------DADTKRTTYEANPGACYNLVRSGKILEMIESQYGTAERDLVQTLL 114
Score = 44.3 bits (103), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 35/178 (19%), Positives = 82/178 (46%), Gaps = 12/178 (6%)
Query: 346 LDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKI 405
+DF++++E + E+++ + + +GR R+ R+L + G+L E + ++K D
Sbjct: 464 VDFDQVMERLRETELDASIEQSFGRHGLRLTRILREKGKLDEK-MLPSAALMKKTDVQAK 522
Query: 406 LYKLWKDGYLLMEKLVVTGARQSQ--FLLWKVNRQILWKHVLDEMFHAALNLSLRVSYEL 463
+ + G + ++++ R + W +R+ +LD+++ A + + E
Sbjct: 523 MLAMQMAGLVDVQEVPKDNTRVANRTLFFWFFDRERSQAQILDDLYKAMVRALQTLQVER 582
Query: 464 DREKELLNLPADK---------RTGPLQDRYNRIRKVRILLESSQMKLDDAILLFHDF 512
RE+ +L+ K T ++YNR + + L M+LD+ + F ++
Sbjct: 583 HRERNILSFVERKDVMGKEEEVMTAEHYNKYNRHLEEQNKLLGQVMRLDEMVSTFREY 640
>gi|403224119|dbj|BAM42249.1| uncharacterized protein TOT_040000619 [Theileria orientalis strain
Shintoku]
Length = 471
Score = 47.8 bits (112), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 35/161 (21%), Positives = 77/161 (47%), Gaps = 12/161 (7%)
Query: 10 AVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQ-AFT 68
+H++ +FG+ AK+ LL +GP+T + Y+E + V+N L++LI V+ A
Sbjct: 9 VIHILEYYFGEAAAKIASHLLLRGPVTLHKLVSYSEYDFKIVRNTLVILIHHGVVEYAMD 68
Query: 69 TEQPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTL 128
Q F + + Y + +N+L + L ++ D+ +++ + ++G ++
Sbjct: 69 ASQ---FGNKSVTHVLYSIKSENVLSILLIPFLLHTAKEKVDENTFKILFHIAKYGIVSP 125
Query: 129 KQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPAS 169
++ + + E ++ E++ KL+ Y+ RC S
Sbjct: 126 GKIRESFEDMETH-------TIFESISKLINEGYI-RCVDS 158
>gi|302418969|ref|XP_003007315.1| RNA polymerase III subunit Rpc82 [Verticillium albo-atrum VaMs.102]
gi|261352966|gb|EEY15394.1| RNA polymerase III subunit Rpc82 [Verticillium albo-atrum VaMs.102]
Length = 665
Score = 47.8 bits (112), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 66/135 (48%), Gaps = 11/135 (8%)
Query: 1 MLTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQ 60
+++++ + HV+ + FG+L A++ LL KG T + R+T L Q+++ L VL+Q
Sbjct: 4 LISKHAAELCAHVVNDLFGELPARIIAVLLSKGRSTIPQLVRHTSLPPRQMRHGLAVLVQ 63
Query: 61 QNCVQAFTTEQPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGL 120
QN + A + T Y D + +R K + ++ E+ E+ Q +
Sbjct: 64 QNLLYY--------HAIAGSSVTSYEANPDACYNLIRSGKIIDMVGTEYGLAEQEVFQTI 115
Query: 121 LE--HGRLT-LKQMF 132
++ H R++ L Q F
Sbjct: 116 MQLGHARVSDLVQAF 130
Score = 44.3 bits (103), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 35/179 (19%), Positives = 84/179 (46%), Gaps = 14/179 (7%)
Query: 346 LDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKI 405
+DF+ ++E + EV++V+ + +GR R+ R+L G+L E + ++K D
Sbjct: 489 VDFKPLMESLRQVEVDAVIEQTFGRHGLRLTRILRAKGKLDEK-TLPGLALMKKSDVQGK 547
Query: 406 LYKLWKDGYLLMEKLVVTGARQSQ--FLLWKVNRQILWKHVLDEMFHAALNLSLRVSYEL 463
+ L G++ ++++ +R + W + + ++D+++ L + +
Sbjct: 548 MLALQMAGFVDVQEVPRDNSRTANRTMFFWFFDATRVDNQLMDDVYKTMLRCLQTLDVQR 607
Query: 464 DREKELLNLPADKR----------TGPLQDRYNRIRKVRILLESSQMKLDDAILLFHDF 512
RE+ +L+ D++ T ++Y++ ++ L M+LD+ I +F D+
Sbjct: 608 HRERNILSF-VDRKDVKGKEEEVMTAEHYNKYSQFLDLQSKLLGQVMRLDELISVFKDY 665
>gi|396478432|ref|XP_003840531.1| similar to DNA directed RNA polymerase III subunit Rpc82
[Leptosphaeria maculans JN3]
gi|312217103|emb|CBX97052.1| similar to DNA directed RNA polymerase III subunit Rpc82
[Leptosphaeria maculans JN3]
Length = 663
Score = 47.8 bits (112), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 53/115 (46%), Gaps = 11/115 (9%)
Query: 11 VHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTE 70
H++ + +G+L A+V L R G T + R + L+ Q+K L++L+QQ+ V
Sbjct: 16 THLVEDVYGELAARVYSILARHGRQTLAAIARASYLTGRQIKYGLVILLQQHLV------ 69
Query: 71 QPDGFADGPKAN-TQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHG 124
F G T Y + + N VRF K ++ F ++ ++ LL G
Sbjct: 70 ----FHSGDHTPVTYYEIDWQNSYSIVRFGKVTKLVEDRFGKKAANVMSNLLALG 120
Score = 40.0 bits (92), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 59/241 (24%), Positives = 103/241 (42%), Gaps = 36/241 (14%)
Query: 236 VTPGEKRKHDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLS 295
VT + KH E+D C D +VV + HKG HVR+ +N+LS
Sbjct: 395 VTARDVAKHLSKEVDVCEGLDPNAVVL----------ITHKG---HVRS------SNILS 435
Query: 296 AMLQATS---SAEKKVKTKNSVPLSLSSIYEEVIKSEAGRNMTLDHVRASLVQLDFEKII 352
+ T + ++ K+ + LS + S AG S ++F +I
Sbjct: 436 QPIDPTKLTLDEKTRLVDKHIMLLSDDPFHFVTWHSRAG---------FSQWHIEFNEIA 486
Query: 353 EIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKD 412
+ EVE+ + R G+ ++ R L K GRL E +T + D I+ L
Sbjct: 487 KQLIQTEVENTIYARKGKLGVKLIRALRKKGRLDER-ATCNTMMMSATDIRGIINDLTVQ 545
Query: 413 GYLLME---KLVVTGARQSQFLLWKVNRQILWKHVLDEMFHAALNLSLRVSYELDREKEL 469
G++ + K+ A+ S L+W +RQ + +L + + + + R+++E D+ + L
Sbjct: 546 GFVQTQEIPKVERREAKHSLHLVW-YDRQRAREKLLHDTYKGMVRILQRIAFERDKVQPL 604
Query: 470 L 470
L
Sbjct: 605 L 605
>gi|160331229|ref|XP_001712322.1| hypothetical protein HAN_1g161 [Hemiselmis andersenii]
gi|159765769|gb|ABW97997.1| hypothetical protein HAN_1g161 [Hemiselmis andersenii]
Length = 454
Score = 47.8 bits (112), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 50/220 (22%), Positives = 106/220 (48%), Gaps = 41/220 (18%)
Query: 312 NSVPLSLSSIYEEVIKSEAGRNMTLDH----VRASLVQLDFEKIIEIAQNEEVESVVSKR 367
N++ + S + E+ +E +D ++ S +++ + EI +N+ E+++ +
Sbjct: 254 NAIEILKSQNFNEINITEIFDGGVMDRCFLRIKNSRLKISVKFFFEIIRNKIFENLIGNQ 313
Query: 368 YGRDAYRIFRLLSKSGRLLETD--KISDTTFVEKKDAPKILYKLWKDGYLLMEK----LV 421
+G++ RIF++L+K LE++ +IS +++E K K L+K++K G + E+
Sbjct: 314 FGKNFLRIFKILAKD---LESEEKQISIQSWLEVKIIRKELFKMYKLGLVTFEEKNCSFF 370
Query: 422 VTGARQSQFLLWKVNRQILWKHVLDEMFHAALN----------LSLRVSYEL-DREKELL 470
+ ++S L+WK+N L K + E+ + N L++S+ D+ K L
Sbjct: 371 QSTTKKS--LIWKINFLSLKKRFISEILKSIYNLLLKLENLQLFFLKISFFFKDQPKNLK 428
Query: 471 NLPADKRTGPLQDRYNRIRKVRILLESSQMKLDDAILLFH 510
N +R G L +S ++LD+ +L+ +
Sbjct: 429 NYFQHQRVG---------------LTTSILRLDEILLIIY 453
>gi|326436836|gb|EGD82406.1| hypothetical protein PTSG_03049 [Salpingoeca sp. ATCC 50818]
Length = 327
Score = 47.4 bits (111), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 48/151 (31%), Positives = 72/151 (47%), Gaps = 14/151 (9%)
Query: 2 LTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQ 61
+ E + A+ ++ FG LVAKV + L K T Q + R TELS EQV+ +LLVL Q
Sbjct: 1 MMEVARECALAILEEDFGPLVAKVAKVLF-KCSCTMQTLVRLTELSPEQVRKSLLVLRQH 59
Query: 62 NCVQAFTTEQPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLL 121
+ + TE F NTQ +L R RF I+++++ +++ +L
Sbjct: 60 HLLS--YTETRRIFY---TINTQTALL------RNRFPAMCHIVNEQYGDMEQLVLETVL 108
Query: 122 EHGRLTLKQMFDRAKSSEKEGNLVDLDSLRE 152
HG T+ FD S +E + SL E
Sbjct: 109 LHG--TISTCFDFTASPCRECLRIIASSLGE 137
Score = 39.7 bits (91), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 26/115 (22%), Positives = 60/115 (52%), Gaps = 4/115 (3%)
Query: 340 RASLVQLDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEK 399
R+ L D + + + + ++E +++ RYG+++ R+ RLL ++ L+ D+I VE+
Sbjct: 204 RSGLYYFDLKTAMHLVASLQLERILADRYGQESLRLIRLLLEN-HYLDQDQIVRMAMVER 262
Query: 400 KDAPKILY-KLWKDGYLLMEKLVVTGARQSQ--FLLWKVNRQILWKHVLDEMFHA 451
A ++L +L++ G + +++ + R LW + + K + ++ HA
Sbjct: 263 YAATRVLLNELFQAGLISCQEIPKSADRAPSRCHYLWHADHASVVKTLQAQLLHA 317
>gi|443898635|dbj|GAC75969.1| RNA polymerase III (C) subunit [Pseudozyma antarctica T-34]
Length = 715
Score = 47.4 bits (111), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 35/170 (20%), Positives = 64/170 (37%), Gaps = 44/170 (25%)
Query: 12 HVITNHFGDLVAKVCECLLRKGPLTRQNVKRY----------------TELSDEQVKNAL 55
HV+ HFG + A++ LL++G LT + ++R+ T S K+ L
Sbjct: 16 HVLLVHFGPIAARIGALLLKRGRLTIREIQRFLNQAPTRTNRGPTDPFTNASTTHTKSTL 75
Query: 56 LVLIQQNCVQAFTTEQPDGFADGPKANTQYVVL--------------------------- 88
+ ++ T P+ PK + +L
Sbjct: 76 VSAPIAGASTSYNTGDPNAPVPVPKLLIEQTILTLIQHGCAWHSSTDPDVADPSQEFFEI 135
Query: 89 -FDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTLKQMFDRAKS 137
+++L R RF +++ I E +V+ +L+HG+L + DR S
Sbjct: 136 NINDVLLRPRFGRYIGIAEDELGDTSARIVKLVLQHGKLQASDIIDRIAS 185
Score = 40.8 bits (94), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 62/132 (46%), Gaps = 3/132 (2%)
Query: 341 ASLVQLDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKK 400
AS + ++F + E + + + +VV ++G A RI +L G+ LE IS V
Sbjct: 525 ASSLTVEFANVAERMRRDLLRNVVEDKFGGAAIRIMNILRDKGK-LEEKHISKLALVSIS 583
Query: 401 DAPKILYKLWKDGYLLMEKLVVTGARQS--QFLLWKVNRQILWKHVLDEMFHAALNLSLR 458
+ + +L+ L ++++ T R F LW V+ +LD ++ + +S R
Sbjct: 584 ETRDLCSRLFHASLLGLQEVPKTKDRDPAKTFFLWFVDEAKCRAWLLDHLYQSLARISQR 643
Query: 459 VSYELDREKELL 470
+ E+ R+ LL
Sbjct: 644 RNDEMRRQLPLL 655
>gi|354544740|emb|CCE41465.1| hypothetical protein CPAR2_800170 [Candida parapsilosis]
Length = 596
Score = 47.0 bits (110), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 64/127 (50%), Gaps = 12/127 (9%)
Query: 13 VITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQP 72
V + H G++ +K+ L+ +G T + + + T+L+ + VK+AL+ LIQ CV
Sbjct: 22 VASTHLGEVASKIISVLIAQGRQTAKELSQRTQLTLKSVKSALVSLIQLGCVY------- 74
Query: 73 DGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTLKQ-- 130
F +T Y + + + L ++QE+ ++ E+VQ ++E G + L++
Sbjct: 75 --FWQDRDKSTHYSLNETGLKILINSGDILNHITQEYGEEEAEVVQNVMELGHIKLEEYL 132
Query: 131 -MFDRAK 136
FD+ K
Sbjct: 133 KQFDQDK 139
>gi|255931675|ref|XP_002557394.1| Pc12g05490 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211582013|emb|CAP80176.1| Pc12g05490 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 641
Score = 47.0 bits (110), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 35/149 (23%), Positives = 72/149 (48%), Gaps = 5/149 (3%)
Query: 326 IKSEAGRNMTLDHVRASLV--QLDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSG 383
I S+ N+T HV + L ++ F + ++ E+E ++ RYG A R+ R+L G
Sbjct: 443 ILSQPPLNLTTKHVISGLPTWRVAFRGLARKLRHLELERMIESRYGDVALRVVRVLHAKG 502
Query: 384 RLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTGARQSQ--FLLWKVNRQILW 441
+L E ++ + + + KD + L + G++ ++++ RQ LW + +
Sbjct: 503 KLDEK-RLQEISLLPFKDLRQTLASMQTGGFVDLQEVPRDAQRQPSKTIYLWYYDPDRVC 561
Query: 442 KHVLDEMFHAALNLSLRVSYELDREKELL 470
+L++ + A R+ +E RE++ L
Sbjct: 562 SSILEDTYKAMSRCLQRIKFERSRERDFL 590
Score = 44.7 bits (104), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 30/131 (22%), Positives = 61/131 (46%), Gaps = 8/131 (6%)
Query: 1 MLTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQ 60
M+++ + + +I ++FG+L A++ L R LT +K Y L+D Q+ + L +IQ
Sbjct: 1 MMSQCSAELCMLLIEDNFGELFARIFTVLQRYERLTLPRLKFYARLTDRQLHHGLSAMIQ 60
Query: 61 QNCVQAFTTEQPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGL 120
+ + FT+ DG NT Y VR K L ++ + ++++ +
Sbjct: 61 HHLIYHFTS-----LDDG---NTYYEANPQAAYSLVRSGKILQLVENRLGEYAAQVLEAI 112
Query: 121 LEHGRLTLKQM 131
+ G ++ +
Sbjct: 113 MMLGHSSIAHL 123
>gi|358371561|dbj|GAA88168.1| DNA directed RNA polymerase III subunit Rpc82 [Aspergillus kawachii
IFO 4308]
Length = 628
Score = 46.6 bits (109), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 59/124 (47%), Gaps = 8/124 (6%)
Query: 1 MLTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQ 60
M ++Y + ++ ++FG+L A++ L R L+ +K Y+ LSD Q+++ L +IQ
Sbjct: 1 MTSQYAAELCALLVEDNFGELFARIFSTLQRYDRLSLPRLKFYSRLSDRQLRHGLSAMIQ 60
Query: 61 QNCVQAFTTEQPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGL 120
+ V +T+ + DG T Y + VR K L + + + L++ +
Sbjct: 61 HHLVYHYTS-----YDDG---VTYYEPNLQAAYYLVRSGKILEFIEERLGKYAATLMETI 112
Query: 121 LEHG 124
+ G
Sbjct: 113 MYLG 116
Score = 43.9 bits (102), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 33/147 (22%), Positives = 72/147 (48%), Gaps = 5/147 (3%)
Query: 328 SEAGRNMTLDHVRASLVQ--LDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRL 385
S+ N+T + + L+ ++F + ++ E+E ++ RYG A R+ R+L G+L
Sbjct: 432 SQPPYNLTSKRLLSGLITWTVEFRHLARKLRHLELERMIEARYGDVALRVIRVLHAKGKL 491
Query: 386 LETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTGARQSQ--FLLWKVNRQILWKH 443
E ++ + + + KD ++L + G++ ++++ RQ LW + +
Sbjct: 492 DEK-RLQEISLLPFKDLRQVLASMQSGGFVDLQEVPRDAQRQPSRTIYLWYYDPDRIRSS 550
Query: 444 VLDEMFHAALNLSLRVSYELDREKELL 470
+L++ + A R+ +E +R KE L
Sbjct: 551 ILEDTYKAMSRCMQRLRFERNRLKEFL 577
>gi|224002599|ref|XP_002290971.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220972747|gb|EED91078.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 579
Score = 46.6 bits (109), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 40/185 (21%), Positives = 91/185 (49%), Gaps = 13/185 (7%)
Query: 338 HVRASLVQLDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFV 397
H ++ ++++ ++ + V++ +G A RI +L G + E+D I++ +
Sbjct: 398 HPAGGKFEISTRQLLQRMRDRILHRVLTTHHGLAAARIVSILQVKGHM-ESDSIAEDAMM 456
Query: 398 EKKDAPKILYKLWKDGYLLMEKLVVTGARQS--QFLLWKVNRQILWKHVLDEMFHAALNL 455
K+A +IL++L +D ++ + + +T S LW V L V++ ++ A L+L
Sbjct: 457 PAKEAREILHRLHRDKFINLFDMHMTKQHNSGTAIYLWNVIPSRLMNTVVNNVYTAILHL 516
Query: 456 SLRVSYELDREKELLNLPADKRTGPLQD--------RYNRIRKVRILLESSQMKLDDAIL 507
LR +E++ K+ ++ K G ++ +Y+ K L+ + ++LD+ ++
Sbjct: 517 RLRRQHEVEVGKDWMDRA--KEAGATEENVHEDDKRKYHAFCKGLDRLDFACLQLDETLM 574
Query: 508 LFHDF 512
+ DF
Sbjct: 575 VLKDF 579
>gi|330921180|ref|XP_003299319.1| hypothetical protein PTT_10280 [Pyrenophora teres f. teres 0-1]
gi|311327077|gb|EFQ92598.1| hypothetical protein PTT_10280 [Pyrenophora teres f. teres 0-1]
Length = 681
Score = 46.6 bits (109), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 54/117 (46%), Gaps = 11/117 (9%)
Query: 18 FGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQPDGFAD 77
+G+L A+V L R G + ++ R + LS Q+K L++L+QQ+ + F
Sbjct: 23 YGELAARVYSILARHGRQSLASIARASYLSGRQIKYGLVILLQQHLI----------FHS 72
Query: 78 GPKAN-TQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTLKQMFD 133
G A T Y + + N VRF K ++ F ++ ++ L+ G + + D
Sbjct: 73 GSNAPLTYYEIDWQNSYAIVRFGKVTKLVEDRFGKKAANIMSNLVALGHTRIADLKD 129
>gi|66356884|ref|XP_625620.1| hypothetical protein [Cryptosporidium parvum Iowa II]
gi|46226721|gb|EAK87700.1| hypothetical protein cgd4_110 [Cryptosporidium parvum Iowa II]
Length = 618
Score = 46.6 bits (109), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 29/133 (21%), Positives = 62/133 (46%), Gaps = 16/133 (12%)
Query: 13 VITNHFGDLVAKVCECLLRKGPLT-----------RQNVKRYTELSDEQV---KNALLVL 58
+I+ HFG L A + + L+ GPL +++ K + S +N+++ L
Sbjct: 11 IISTHFGGLPAIIIKKLVVNGPLPMDRLYHLVIKDKESSKYLSSNSKNNFLSFRNSMMYL 70
Query: 59 IQQNCVQAFTTEQPDGFADGPK--ANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVEL 116
+ C+ + P+ D K N + V D+++ R+RF ++ + + + C +
Sbjct: 71 VHHYCIIYYEISDPNIELDNSKEGKNVVFEVNIDHVISRLRFPLYMAHIEKLLGETCKYI 130
Query: 117 VQGLLEHGRLTLK 129
+++HGR++ K
Sbjct: 131 FMEVIKHGRISTK 143
>gi|268567834|ref|XP_002640090.1| Hypothetical protein CBG12577 [Caenorhabditis briggsae]
Length = 546
Score = 46.6 bits (109), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 109/526 (20%), Positives = 201/526 (38%), Gaps = 110/526 (20%)
Query: 4 EYGTKHAVHVITNHFGDLVAKVCECLLRKGP-LTRQNVKRYTELSDEQVKNALLVLIQQN 62
+Y T+ V ++ + FG +VAKV E +L++ L +K ++S V+ AL LI
Sbjct: 5 KYETQMCVIMVEDIFGKIVAKVLETVLKESCHLPTLLLKLKGQMSSVLVRKALSTLINFG 64
Query: 63 CVQAFTTEQPDGFADGPKANTQYVVLFDNILHRVRFAKFL----TILSQEFDQQCVELVQ 118
V F+ T YV D I + + + T+ + CVEL+
Sbjct: 65 FV---------SFSLDTNNRTTYVADADQIQYVISAPRACLIAKTLHGPAAESICVELI- 114
Query: 119 GLLEHGRLTLKQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISE 178
GRLT+ + R +S+++ V+ ++ + +L A ++ R PA E L
Sbjct: 115 ---SQGRLTVSETIRRIRSTDES---VEFSDIKHSFEELARAQFLIRVPAVESNLY---- 164
Query: 179 EEGPARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNV-ESDVGEKEKNSNNVT 237
G P+ L + +F + N+ E + +S N
Sbjct: 165 ----------------GCPQ----------LTVNFNQFEMPKNIMEKKEPQTRGSSFNDA 198
Query: 238 PGEKRKHDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAM 297
KRK D D + +R N+ F LR + ID +L G +
Sbjct: 199 SSRKRKADASPEDM-----DAGQYWRINWARFNGYLRDELIID----YLIGGGSTATMTH 249
Query: 298 LQATSSAEKKVKTKNSVPLSLSSIYEEVIKSEAGRN--MTLDHVRASLVQL--------- 346
L ++E+ V ++ ++ + KS R +++D + S+ L
Sbjct: 250 LNVRKNSEEDVPQQDRTQYITQNVAHLMFKSNELRANPLSMDSITVSITDLQKLVRENEL 309
Query: 347 -----DFEKIIEIAQNEE------------------------------VESVVSKRYGRD 371
D E +I +E ES++ +++
Sbjct: 310 DLSKPDIELACQILVDESDGIVRKVGDSNGGLYTVDIRHGIRQICRHHCESLIREQFEGR 369
Query: 372 AYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTGARQS--Q 429
A R+ RLL +S L+ +++ + + K+A ++LY L ++GY+ + + + Q
Sbjct: 370 AIRVMRLL-ESRHYLDEEQVEKLSMMSGKEAREMLYALVEEGYVFNKPVGRSNDFQPART 428
Query: 430 FLLWKVNRQILWKHVLDEMFHAALNLSLRVSYELDREKELLNLPAD 475
F L+ V+ + +++ NL LR +E K LL+ A+
Sbjct: 429 FYLYYVDLPRTIRGLVEYTCKLVRNLILRQRHERTENKALLDKDAN 474
>gi|425774118|gb|EKV12435.1| DNA directed RNA polymerase III subunit Rpc82, putative
[Penicillium digitatum PHI26]
gi|425778571|gb|EKV16695.1| DNA directed RNA polymerase III subunit Rpc82, putative
[Penicillium digitatum Pd1]
Length = 641
Score = 46.6 bits (109), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 35/149 (23%), Positives = 72/149 (48%), Gaps = 5/149 (3%)
Query: 326 IKSEAGRNMTLDHVRASLV--QLDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSG 383
I S+ N+T HV + L ++ F + ++ E+E ++ RYG A R+ R+L G
Sbjct: 443 ILSQPPLNLTTKHVISGLPTWRVAFRGLSRKLRHLELERMIESRYGDVALRVVRVLHSKG 502
Query: 384 RLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTGARQSQ--FLLWKVNRQILW 441
+L E ++ + + + KD + L + G++ ++++ RQ LW + +
Sbjct: 503 KLDEK-RLQEISLLPFKDLRQTLASMQTGGFVDLQEVPRDAQRQPSKTIYLWYYDPDRVC 561
Query: 442 KHVLDEMFHAALNLSLRVSYELDREKELL 470
+L++ + A R+ +E RE++ L
Sbjct: 562 SSILEDTYKAMSRCLQRIKFERSRERDFL 590
Score = 45.4 bits (106), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 31/131 (23%), Positives = 61/131 (46%), Gaps = 8/131 (6%)
Query: 1 MLTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQ 60
M+++ + + +I ++FG+L A++ L R LT +K Y LSD Q+ + L +IQ
Sbjct: 1 MMSQCCAELCMLLIEDNFGELFARIFTVLQRYERLTLPRLKFYARLSDRQLHHGLCAMIQ 60
Query: 61 QNCVQAFTTEQPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGL 120
+ + FT+ DG NT Y VR K L ++ + ++++ +
Sbjct: 61 HHLIYHFTS-----LDDG---NTYYEANPQAAYSLVRSGKILQLVESRLGEYAAQVLEAI 112
Query: 121 LEHGRLTLKQM 131
+ G ++ +
Sbjct: 113 MMLGHSSIAHL 123
>gi|310798055|gb|EFQ32948.1| RNA polymerase III subunit RPC82 [Glomerella graminicola M1.001]
Length = 662
Score = 46.6 bits (109), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 66/136 (48%), Gaps = 11/136 (8%)
Query: 1 MLTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQ 60
++T++G + H++ + G+L A++ L +G T + + T L+ Q+++ L VL+Q
Sbjct: 2 LVTKHGAELCAHLVNDICGELPARILGVLFSRGRSTIAQLVQTTALTPRQLRHGLAVLVQ 61
Query: 61 QNCVQAFTTEQPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGL 120
QN V AD Y D + +R K + ++ E+ E+VQ +
Sbjct: 62 QNLVYH--------QADSKNTIATYEANPDGCYNLIRAGKIVEMVGTEYGSPEQEVVQTI 113
Query: 121 LE--HGRLT-LKQMFD 133
++ H R++ L Q F+
Sbjct: 114 MQLGHARVSDLLQAFE 129
Score = 43.5 bits (101), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 34/178 (19%), Positives = 82/178 (46%), Gaps = 12/178 (6%)
Query: 346 LDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKI 405
+DF+ +IE + EV++V+ + +GR R+ R+L + G+L E + ++K +
Sbjct: 486 VDFKPLIEGFKQTEVDAVIEQSFGRHGLRLTRILREKGKLDEK-MLPSLALMKKGEVQGK 544
Query: 406 LYKLWKDGYLLMEKLVVTGARQS--QFLLWKVNRQILWKHVLDEMFHAALNLSLRVSYEL 463
+ + G++ ++++ +R + W + + + ++D+ + L +
Sbjct: 545 MLAMQMAGFVDVQEVPRDASRTATRTMFFWFFDIERIEAQLVDDFYKTMLRCLQNLEVHR 604
Query: 464 DREKELLNL---------PADKRTGPLQDRYNRIRKVRILLESSQMKLDDAILLFHDF 512
RE+ +L+ + T ++Y+R ++ L M+LDD + +F D+
Sbjct: 605 YRERNILSFVERNDVKGKEEEVMTAEHYNKYSRYLDLQSKLLGHVMRLDDLVAVFRDY 662
>gi|71017949|ref|XP_759205.1| hypothetical protein UM03058.1 [Ustilago maydis 521]
gi|46098826|gb|EAK84059.1| hypothetical protein UM03058.1 [Ustilago maydis 521]
Length = 715
Score = 46.6 bits (109), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 38/172 (22%), Positives = 68/172 (39%), Gaps = 54/172 (31%)
Query: 12 HVITNHFGDLVAKVCECLLRKGPLTRQNVKRY-------------TELSDEQVKNA---- 54
H++ HFG + A+V LL++G LT + + R+ S+ N+
Sbjct: 16 HILLQHFGPIAARVGALLLKRGRLTIREISRFLNQQPTRTNRGPIDPFSNHSATNSKSTL 75
Query: 55 -------------------------------LLVLIQQNCVQAFTTEQPDGFADGPKANT 83
++ LIQ C +T+ PD AD N
Sbjct: 76 VSAPIAGASSSSSTSDPNAPVPVPKLLIEQTVMTLIQHGCAWHSSTD-PD-VAD---PNQ 130
Query: 84 QYV-VLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTLKQMFDR 134
++ + + +L R+RF +++ I E Q +V+ +L+HG+L + DR
Sbjct: 131 EFFEININEVLLRLRFGRYIGIAEDELGQTAARIVKLVLQHGKLQANDIIDR 182
Score = 41.6 bits (96), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 63/132 (47%), Gaps = 3/132 (2%)
Query: 341 ASLVQLDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKK 400
AS + ++F + E + + + +VV +++G A RI +L + G+ LE IS V
Sbjct: 525 ASTLTIEFGNLAEGMRKDLLRNVVEEKFGTAAIRIMNILREKGK-LEEKHISKLALVSIS 583
Query: 401 DAPKILYKLWKDGYLLMEKLVVTGARQS--QFLLWKVNRQILWKHVLDEMFHAALNLSLR 458
+ + +L+ L ++++ T R F LW V+ +LD ++ + L R
Sbjct: 584 ETRDLCSRLFHASLLGLQEVPKTKDRDPAKTFFLWFVDEAKCRAWLLDHLYQSLARLGQR 643
Query: 459 VSYELDREKELL 470
+ E+ ++ LL
Sbjct: 644 RNEEMRKQTPLL 655
>gi|346979163|gb|EGY22615.1| RNA polymerase III subunit Rpc82 [Verticillium dahliae VdLs.17]
Length = 666
Score = 46.2 bits (108), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 65/137 (47%), Gaps = 15/137 (10%)
Query: 1 MLTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQ 60
+++++ + HV+ + FG+L A++ LL KG T + R+T L Q+++ L VL+Q
Sbjct: 4 LISKHAAELCAHVVNDLFGELPARIIAVLLSKGRSTIPQLVRHTSLPPRQMRHGLAVLVQ 63
Query: 61 QNCV--QAFTTEQPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQ 118
QN + A + P D + VR K + ++ E+ E+ Q
Sbjct: 64 QNLLYHHAIAGSSVASYEANP----------DACYNLVRSGKIIDMVGTEYGLAEQEVFQ 113
Query: 119 GLLE--HGRLT-LKQMF 132
+++ H R++ L Q F
Sbjct: 114 TIMQLGHARVSDLVQAF 130
Score = 44.3 bits (103), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 35/179 (19%), Positives = 84/179 (46%), Gaps = 14/179 (7%)
Query: 346 LDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKI 405
+DF+ ++E + EV++V+ + +GR R+ R+L G+L E + ++K D
Sbjct: 490 VDFKPLMESLRQVEVDAVIEQTFGRHGLRLTRILRAKGKLDEK-TLPGLALMKKSDVQGK 548
Query: 406 LYKLWKDGYLLMEKLVVTGARQSQ--FLLWKVNRQILWKHVLDEMFHAALNLSLRVSYEL 463
+ L G++ ++++ +R + W + + ++D+++ L + +
Sbjct: 549 MLALQMAGFVDVQEVPRDNSRTANRTMFFWFFDATRVDNQLMDDVYKTMLRCLQTLDVQR 608
Query: 464 DREKELLNLPADKR----------TGPLQDRYNRIRKVRILLESSQMKLDDAILLFHDF 512
RE+ +L+ D++ T ++Y++ ++ L M+LD+ I +F D+
Sbjct: 609 HRERNILSF-VDRKDVKGKEEEVMTAEHYNKYSQFLDLQSKLLGQVMRLDELISVFKDY 666
>gi|145242812|ref|XP_001393979.1| DNA-directed RNA polymerase III subunit RPC-3 [Aspergillus niger
CBS 513.88]
gi|206558114|sp|A2QUS7.1|RPC3_ASPNC RecName: Full=DNA-directed RNA polymerase III subunit rpc3;
Short=RNA polymerase III subunit C3
gi|134078536|emb|CAK40457.1| unnamed protein product [Aspergillus niger]
gi|350640252|gb|EHA28605.1| hypothetical protein ASPNIDRAFT_50014 [Aspergillus niger ATCC 1015]
Length = 627
Score = 46.2 bits (108), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 58/121 (47%), Gaps = 8/121 (6%)
Query: 1 MLTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQ 60
M ++Y + ++ ++FG+L A++ L R L+ +K Y+ LSD Q+++ L +IQ
Sbjct: 1 MTSQYAAELCALLVEDNFGELFARIFSTLQRYDRLSLPRLKFYSRLSDRQLRHGLSAMIQ 60
Query: 61 QNCVQAFTTEQPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGL 120
+ V +T+ + DG T Y + VR K L + + + L++ +
Sbjct: 61 HHLVYHYTS-----YDDG---VTYYEPNLQAAYYLVRSGKILEFIEERLGKYAATLMETI 112
Query: 121 L 121
+
Sbjct: 113 M 113
Score = 45.1 bits (105), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 34/147 (23%), Positives = 72/147 (48%), Gaps = 5/147 (3%)
Query: 328 SEAGRNMTLDHVRASLVQ--LDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRL 385
S+ N+T V + L+ ++F + ++ E+E ++ RYG A R+ R+L G+L
Sbjct: 431 SQPPYNLTSKRVLSGLITWTVEFRHLARKLRHLELERMIEARYGDVALRVIRVLHAKGKL 490
Query: 386 LETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTGARQSQ--FLLWKVNRQILWKH 443
E ++ + + + KD ++L + G++ ++++ RQ LW + +
Sbjct: 491 DEK-RLQEISLLPFKDLRQVLASMQSGGFVDLQEVPRDAQRQPSRTIYLWYYDPDRIRSS 549
Query: 444 VLDEMFHAALNLSLRVSYELDREKELL 470
+L++ + A R+ +E +R KE L
Sbjct: 550 ILEDTYKAMSRCMQRLRFERNRLKEFL 576
>gi|448507857|ref|XP_003865864.1| Rpc82 protein [Candida orthopsilosis Co 90-125]
gi|380350202|emb|CCG20422.1| Rpc82 protein [Candida orthopsilosis Co 90-125]
Length = 629
Score = 46.2 bits (108), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 31/127 (24%), Positives = 65/127 (51%), Gaps = 12/127 (9%)
Query: 13 VITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQP 72
V H G++ +K+ L+ G T + + + T+L+ + +K+AL+ LIQ +CV + +
Sbjct: 60 VALTHLGEVASKIISTLIAHGRQTAKELSQRTQLTLKSIKSALVSLIQLSCVNFWQEKDK 119
Query: 73 DGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTLKQM- 131
+ + + +V +IL+ + +QE+ ++ E VQ ++E G + L++
Sbjct: 120 STYYSFNETGLKILVNSGDILNHI---------TQEYGEEEAEAVQNVMELGHIKLEEYL 170
Query: 132 --FDRAK 136
FD+ K
Sbjct: 171 KQFDQDK 177
>gi|253745283|gb|EET01310.1| Hypothetical protein GL50581_1430 [Giardia intestinalis ATCC 50581]
Length = 487
Score = 45.8 bits (107), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 49/227 (21%), Positives = 90/227 (39%), Gaps = 37/227 (16%)
Query: 227 GEKEKNSNNVTPGEKRKHDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHL 286
G K + P K+ H D V+D V Y + E I + + D+V
Sbjct: 184 GRNTKGTEPAEPPRKQPHSFCTTDPSAVSDSGEV-YCVSVERLIALFQEEELADYVSTVY 242
Query: 287 DDGAANVLSAMLQATSS---------AEKKVKTKNSVPLSLSSIYEEVIKSE-----AGR 332
D V A L +SS + V+ N+ P +L +++ ++ ++ G
Sbjct: 243 DKDMGTVFRAALFISSSFQALGFCSFSSADVR-PNTRPFNLEQLHDALMNTQYSLNATGS 301
Query: 333 NMTLDHVRASLVQL-------------------DFEKIIEIAQNEEVESVVSKRYGRDAY 373
N TL AS++ L D + +E Q + ++++R+G A
Sbjct: 302 NFTLSFC-ASVLNLYISESKAMVHMTNDGQYIVDVDAAVERLQMAILLRIITERHGPMAR 360
Query: 374 RIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKL 420
R+F ++S G ++E ++ + + A +L L +GYL + L
Sbjct: 361 RMFNIISSRG-MMEASVVAAEGMIPRSQAVSLLTTLCTEGYLQITML 406
>gi|346321439|gb|EGX91038.1| RNA polymerase III Rpc82, C -terminal [Cordyceps militaris CM01]
Length = 642
Score = 45.8 bits (107), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 56/122 (45%), Gaps = 12/122 (9%)
Query: 7 TKHAVHV----ITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQN 62
TKHA + + + +G+L +++ LL KG T + ++T L ++N L VLIQQN
Sbjct: 4 TKHAAELCALLVNDLYGELPSRILATLLTKGRSTIAQLAQHTSLPPRFLRNGLSVLIQQN 63
Query: 63 CVQAFTTEQPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLE 122
+ T PD +AN D R K L + +F +LVQ LL+
Sbjct: 64 LLYHHT--DPDSRGTSYEANP------DACYTLTRSGKILEAIESQFGTAERDLVQTLLQ 115
Query: 123 HG 124
G
Sbjct: 116 LG 117
Score = 45.4 bits (106), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 37/178 (20%), Positives = 80/178 (44%), Gaps = 12/178 (6%)
Query: 346 LDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKI 405
+DF K++ + E+++ + + +GR R+ R+L + G+L E + ++K D
Sbjct: 466 VDFSKVLNRLKETELDAYIEQSFGRHGLRLTRILREKGKLDEK-MLPSAALMKKSDVQLK 524
Query: 406 LYKLWKDGYLLMEKLVVTGARQSQ--FLLWKVNRQILWKHVLDEMFHAALNLSLRVSYEL 463
+ + G + ++++ +R + W +R+ VLD+++ A + + E
Sbjct: 525 MIAMQMAGLVDVQEVPKDNSRMANRTLFFWFFDRERTESQVLDDIYKAMVRCLETLQVER 584
Query: 464 DREKELLNLPADK---------RTGPLQDRYNRIRKVRILLESSQMKLDDAILLFHDF 512
+E+ +L+ K T D+YN V L M+LD+ + +F D+
Sbjct: 585 HKERNILSFVERKDVQGKEEEVMTTEHYDKYNDHLAVEEKLLGQVMRLDEMVAVFRDY 642
>gi|448090129|ref|XP_004196993.1| Piso0_004227 [Millerozyma farinosa CBS 7064]
gi|448094511|ref|XP_004198024.1| Piso0_004227 [Millerozyma farinosa CBS 7064]
gi|359378415|emb|CCE84674.1| Piso0_004227 [Millerozyma farinosa CBS 7064]
gi|359379446|emb|CCE83643.1| Piso0_004227 [Millerozyma farinosa CBS 7064]
Length = 609
Score = 45.8 bits (107), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 45/186 (24%), Positives = 77/186 (41%), Gaps = 11/186 (5%)
Query: 13 VITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQP 72
V H G++ A V L+ G LT +++ + +++ + VK L+ LIQ NC+
Sbjct: 24 VAKTHLGEVAAVVISILISYGRLTAKDISQRSKIQLKLVKLTLVSLIQLNCIYY------ 77
Query: 73 DGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTLKQMF 132
+ D N Y IL + + + + +F ++ EL Q L+E G + ++
Sbjct: 78 --WHDKTSNNVYYSFNERGILMLLHSGEIIVHIKNKFGEEAAELTQHLIEFGNIKIEDYL 135
Query: 133 DRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEE--EGPARKKGSKS 190
K E + + + T L+ V+ P E L M + EE R
Sbjct: 136 INFKDEESKYKRESIITTLFTQKWLIGVSKVDFNPI-EDLWMTVYEEVLRNTPRSTTMSE 194
Query: 191 AKKIGE 196
AK+I E
Sbjct: 195 AKRIAE 200
>gi|195329508|ref|XP_002031452.1| GM24041 [Drosophila sechellia]
gi|194120395|gb|EDW42438.1| GM24041 [Drosophila sechellia]
Length = 522
Score = 45.8 bits (107), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 49/241 (20%), Positives = 103/241 (42%), Gaps = 25/241 (10%)
Query: 255 ADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAAN----VLSAMLQATSSAEKKVKT 310
A + +V+ N + F + R +D + L + AA +L M T E+K+
Sbjct: 204 AKDSHMVWNLNHDRFHQDFRDTIMVDAIERKLGENAAECFRFILKIMYNTTDPWERKLSN 263
Query: 311 ------------KNSVPLSLSSIYEEVI----KSEAGRNMTLDHVRASLVQLDFEKIIEI 354
+ S L L ++ I + G + + + +D E E
Sbjct: 264 QITFVEIKQAIERKSNNLDLMKYLDQYISLLTEDSLGFFRRVGDMGGGVYVVDMEHAFES 323
Query: 355 AQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGY 414
VE V+++R+G A RIFR++ +S + +E + + + K+A + Y L+++ +
Sbjct: 324 LAFACVECVITERFGSKAARIFRVI-RSKKYIEQEDLQKEAMIPSKEAKSLAYNLFQEQF 382
Query: 415 LLMEKLVVTGARQS----QFLLWKVNRQILWKHVLDEMFHAALNLSLRVSYELDREKELL 470
+ ++ + G + F L++V + + +LD + + N R ++E + K L+
Sbjct: 383 IHVKIIKKPGGGSNGPAKAFYLFQVREKDTVRMLLDASYKSLYNTIERSNFEKNEHKGLI 442
Query: 471 N 471
+
Sbjct: 443 D 443
Score = 45.1 bits (105), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 34/155 (21%), Positives = 73/155 (47%), Gaps = 8/155 (5%)
Query: 13 VITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQP 72
++ FG +V V +CL T + T+LS ++V AL VL++ V FT +
Sbjct: 12 ILEQCFGKVVQAVADCLFSATTRTLGQITSATKLSRKEVAFALAVLVKFRLVD-FTASKA 70
Query: 73 DGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTLKQMF 132
+ F +Y + +++L +R+ +++ ++ ++ + + L+ G T +
Sbjct: 71 NPFL------AEYALRREDVLCLLRYPRYVHLVQTKYGNVGASISEELINSGSDTATGIL 124
Query: 133 DRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCP 167
+ +E E +S R T ++++T HY+ + P
Sbjct: 125 LKC-LAENENKAESPESYRNTFLEMITDHYIIKRP 158
>gi|68480462|ref|XP_715829.1| potential RNA Pol III subunit C82 [Candida albicans SC5314]
gi|74590267|sp|Q5A246.1|RPC3_CANAL RecName: Full=DNA-directed RNA polymerase III subunit RPC3;
Short=RNA polymerase III subunit C3
gi|46437470|gb|EAK96816.1| potential RNA Pol III subunit C82 [Candida albicans SC5314]
Length = 595
Score = 45.8 bits (107), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 34/153 (22%), Positives = 72/153 (47%), Gaps = 14/153 (9%)
Query: 15 TNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQPDG 74
T H G++ + + L+ G LT + + T++ + +K+AL+ LIQ NC+ + E+
Sbjct: 24 TTHLGEIASCIISILISNGRLTAREISNRTKIPTKNIKSALVSLIQLNCIYYWQEEKDRK 83
Query: 75 FADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTLKQMF-- 132
F K ++LF V + + +++ + E++Q +L HG + ++
Sbjct: 84 FYYSLKETG--LLLF------VYSGDIINHIKRQYGEDEAEIIQNILIHGHVKIEDYLTQ 135
Query: 133 ---DRAKSSEKEGNLVDLDSLRETLVKLVTAHY 162
D++ ++E + L + L+KL H+
Sbjct: 136 FNHDKSMKIDQENKFLKLFN-DNWLIKLQDYHF 167
>gi|408395935|gb|EKJ75106.1| hypothetical protein FPSE_04726 [Fusarium pseudograminearum CS3096]
Length = 634
Score = 45.8 bits (107), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 61/133 (45%), Gaps = 15/133 (11%)
Query: 7 TKHAVHV----ITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQN 62
TKHA + + + G+L +++ LL KG T + ++T L+ ++N L VLIQQN
Sbjct: 4 TKHAAELCALLVNDLHGELPSRILNALLTKGRSTIAQLIQHTSLTLRYLRNGLAVLIQQN 63
Query: 63 CVQAFTTEQPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLE 122
+ T D T Y D + +R K L ++ ++ EL Q L++
Sbjct: 64 LIYHHT--------DTNNNVTNYQANADACYNLIRSGKILDVIETQYGTAERELTQTLIQ 115
Query: 123 --HGRLT-LKQMF 132
H R+ L Q F
Sbjct: 116 LGHARIADLSQAF 128
Score = 40.8 bits (94), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 33/178 (18%), Positives = 82/178 (46%), Gaps = 12/178 (6%)
Query: 346 LDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKI 405
+DF++++ + E+++++ + +GR R+ R+L + G+L E + ++K D
Sbjct: 458 VDFDRLVGKLRETELDAIIEQSHGRHGLRLTRILREKGKLDEK-MLPAAALMKKGDVQGK 516
Query: 406 LYKLWKDGYLLMEKLVVTGARQSQ--FLLWKVNRQILWKHVLDEMFHAALNLSLRVSYEL 463
+ + G + ++++ +R + W +++ LD+++ A L + E
Sbjct: 517 MLAMQMAGIVDVQEVPKDSSRLANRTLFFWYFDKERAQTQALDDIYKAMLRCLQTLEVER 576
Query: 464 DREKELLNLPADK---------RTGPLQDRYNRIRKVRILLESSQMKLDDAILLFHDF 512
+E+ +L+ K T ++YN +V+ L M+LD+ + + D+
Sbjct: 577 HKERNILSFVERKDVQGKEEEVMTAEHYNKYNTHLEVQNKLLGQLMRLDELVSVLRDY 634
>gi|68480567|ref|XP_715778.1| potential RNA Pol III subunit C82 [Candida albicans SC5314]
gi|46437417|gb|EAK96764.1| potential RNA Pol III subunit C82 [Candida albicans SC5314]
Length = 595
Score = 45.4 bits (106), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 34/153 (22%), Positives = 72/153 (47%), Gaps = 14/153 (9%)
Query: 15 TNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQPDG 74
T H G++ + + L+ G LT + + T++ + +K+AL+ LIQ NC+ + E+
Sbjct: 24 TTHLGEIASCIISILISNGRLTAREISNRTKIPIKNIKSALVSLIQLNCIYYWQEEKDRK 83
Query: 75 FADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTLKQMF-- 132
F K ++LF V + + +++ + E++Q +L HG + ++
Sbjct: 84 FYYSLKETG--LLLF------VYSGDIINHIKRQYGEDGAEIIQNILIHGHVKIEDYLTQ 135
Query: 133 ---DRAKSSEKEGNLVDLDSLRETLVKLVTAHY 162
D++ ++E + L + L+KL H+
Sbjct: 136 FNHDKSMKIDQENKFLKLFN-DNWLIKLQDYHF 167
>gi|195394880|ref|XP_002056067.1| GJ10734 [Drosophila virilis]
gi|194142776|gb|EDW59179.1| GJ10734 [Drosophila virilis]
Length = 522
Score = 45.4 bits (106), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 31/129 (24%), Positives = 62/129 (48%), Gaps = 5/129 (3%)
Query: 346 LDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKI 405
+D EK E VESV+++R+G A RIFR++ + + +E + + + K+A +
Sbjct: 315 VDMEKAFESLALACVESVITERFGSKAARIFRVI-RFKKYIEQEDLQKEAMIPAKEAKSL 373
Query: 406 LYKLWKDGYL----LMEKLVVTGARQSQFLLWKVNRQILWKHVLDEMFHAALNLSLRVSY 461
Y L+++ ++ + + F L+++ + + +LD F + N R +Y
Sbjct: 374 AYNLFQEQFIHVKVIKKPGGGGSGPAKAFYLFQIKEKDTVRMLLDNCFKSLYNTIRRSNY 433
Query: 462 ELDREKELL 470
E K L+
Sbjct: 434 EKSEHKGLI 442
Score = 42.0 bits (97), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 32/155 (20%), Positives = 71/155 (45%), Gaps = 8/155 (5%)
Query: 13 VITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQP 72
++ FG +V V +CL T + T S ++V AL VLI+ V F +
Sbjct: 12 ILEQCFGKVVQSVADCLFSATTRTLSQIVNSTHFSRKEVMLALAVLIKFRLVN-FEPSKN 70
Query: 73 DGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTLKQMF 132
+ F +Y + ++++ +R+++++ ++ ++ + + LL G T +
Sbjct: 71 NPFL------PEYSLRREDVICLLRYSRYIHLVQTKYGNVGASIAEELLNAGSETATGLL 124
Query: 133 DRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCP 167
+ S+ E ++ R+T +K++ HY+ + P
Sbjct: 125 LKC-LSDGENKAESAETYRDTFIKMIADHYIIKIP 158
>gi|294867271|ref|XP_002765036.1| hypothetical protein Pmar_PMAR004492 [Perkinsus marinus ATCC 50983]
gi|239864916|gb|EEQ97753.1| hypothetical protein Pmar_PMAR004492 [Perkinsus marinus ATCC 50983]
Length = 699
Score = 45.4 bits (106), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 74/164 (45%), Gaps = 42/164 (25%)
Query: 10 AVH-----VITNHFGDLVAKVCECLLRKGPLTRQNVKRYT--ELS-------DEQV---- 51
AVH +IT+ FG V+ V CLL +GP+ + +Y ELS D +V
Sbjct: 26 AVHKLCCDIITDQFGPAVSAVASCLLSRGPMRFPELSKYVNEELSWPLDLRTDAKVPHSM 85
Query: 52 ------------KNALLVLIQQNCVQAFTTEQ---PDGFADGPKANTQYVVLF----DNI 92
++AL++L+Q N + Q P G A Q++VL+ +
Sbjct: 86 HEITNRMTWSCIRDALMILLQNNIAVSHMVRQVQVPSQEKAG--APPQHLVLYSASPSAV 143
Query: 93 LHRVRFAKFLTILSQEFDQQ---CVELVQGLLEHGRLTLKQMFD 133
+ R+R+ +++ ++ Q+ ++ V ++ +L GR+ + +
Sbjct: 144 IARLRYPRYMNLVQQQLGRRRPVAVHVMAEVLRRGRVPWDDLIE 187
>gi|358396963|gb|EHK46338.1| hypothetical protein TRIATDRAFT_195782, partial [Trichoderma
atroviride IMI 206040]
Length = 614
Score = 45.1 bits (105), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 34/178 (19%), Positives = 83/178 (46%), Gaps = 12/178 (6%)
Query: 346 LDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKI 405
+DF++++ ++ E+++ + + +GR R+ R+L + G+L E + + ++K D
Sbjct: 438 VDFDQVMGRLRDTELDASIEQSFGRHGLRLTRILREKGKLDEK-MLPSASLMKKTDVQAK 496
Query: 406 LYKLWKDGYLLMEKLVVTGARQSQ--FLLWKVNRQILWKHVLDEMFHAALNLSLRVSYEL 463
+ + G + ++++ R + W +R +LD+++ A + + E
Sbjct: 497 MLAMQMAGLVDVQEVPKDNTRVANRTLFFWFFDRDRSQAQILDDLYKAMVRCLQTLQVER 556
Query: 464 DREKELLNLPADK---------RTGPLQDRYNRIRKVRILLESSQMKLDDAILLFHDF 512
RE+ +L+ K T ++YN+ + + L M+LD+ + +F D+
Sbjct: 557 HRERNILSFVERKDVMGKEEEVMTAEHYNKYNKHLEEQNKLLGQMMRLDEVVSIFRDY 614
>gi|164656160|ref|XP_001729208.1| hypothetical protein MGL_3675 [Malassezia globosa CBS 7966]
gi|159103098|gb|EDP41994.1| hypothetical protein MGL_3675 [Malassezia globosa CBS 7966]
Length = 572
Score = 45.1 bits (105), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 63/132 (47%), Gaps = 3/132 (2%)
Query: 341 ASLVQLDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKK 400
++ +++ I+E Q + VV +R+G A RIF +L + G+ LE IS +
Sbjct: 389 STTFSVEYVNIVERIQLRMIRDVVVERFGSMAGRIFTILVEKGK-LEEKHISKVGLISMS 447
Query: 401 DAPKILYKLWKDGYLLMEKLVVTGARQSQ--FLLWKVNRQILWKHVLDEMFHAALNLSLR 458
+ I +L+ L ++++ + R Q F LW V+ +LD+++ + LS R
Sbjct: 448 ETRDICSRLFAASILSLQEVPKSNERNPQRTFFLWFVDVLKCKSWLLDQLYKTLVQLSRR 507
Query: 459 VSYELDREKELL 470
YE + LL
Sbjct: 508 RLYEQSQRTLLL 519
>gi|296809077|ref|XP_002844877.1| RNA polymerase III subunit Rpc82 [Arthroderma otae CBS 113480]
gi|238844360|gb|EEQ34022.1| RNA polymerase III subunit Rpc82 [Arthroderma otae CBS 113480]
Length = 638
Score = 45.1 bits (105), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 30/127 (23%), Positives = 65/127 (51%), Gaps = 3/127 (2%)
Query: 346 LDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKI 405
++F ++ ++ E+E +V RYG A R+ R+L+ GRL E ++ + + + KD +I
Sbjct: 462 VEFRHLVRQLRHLEIERLVEARYGTVAVRVLRVLADKGRLDEK-RLQEISLMPSKDLRQI 520
Query: 406 LYKLWKDGYLLMEKLVVTGARQSQ--FLLWKVNRQILWKHVLDEMFHAALNLSLRVSYEL 463
L +L G++ ++++ RQ LW + + ++++ + R++YE
Sbjct: 521 LARLQSGGFIDLQEVPRDAQRQPSRTIYLWFYDADRVVMMLVEDAYKCMARCLQRLAYER 580
Query: 464 DREKELL 470
+ K L+
Sbjct: 581 GKLKALI 587
>gi|219121737|ref|XP_002181217.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217407203|gb|EEC47140.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 559
Score = 45.1 bits (105), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 47/217 (21%), Positives = 100/217 (46%), Gaps = 21/217 (9%)
Query: 309 KTKNSVPLSLSSIYEEVIKSEAGRNMTL-DHVRASLVQLDFEKIIEIAQNEEVESVVSKR 367
K V +++SS +EE+ RN T+ V ++ +++ + V +V R
Sbjct: 351 KKMGGVTMAVSSAWEEL---SVVRNPTVVRRVGDDRYEIACSQLVAYLRKRTVHQIVHDR 407
Query: 368 YGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTGARQ 427
+G A R+ +L K G LE+D ++ + KD ++L++L++ Y+ E + +RQ
Sbjct: 408 HGEVAARVVSILGKKG-WLESDNLASFAMIPAKDTREVLHQLYRSQYV--ELFQLANSRQ 464
Query: 428 ----SQFLLWKVNRQILWKHVLDEMFHAALNLSLRVSYELDREKELLNLPADKRTGPLQD 483
S LW V+ Q L + + + + + LR ++++ K+ + ++ +
Sbjct: 465 HNPASTIYLWLVHEQRLVQKAIANVASSLWYVRLRRQHQIEIGKDWIE--RAQQADDTDE 522
Query: 484 RYNRIRKVRI--------LLESSQMKLDDAILLFHDF 512
+ + KV L+ S ++LD+ +++ DF
Sbjct: 523 NDHEMDKVSYEMFCLGLERLDCSTLQLDETLMVLQDF 559
>gi|402076616|gb|EJT72039.1| hypothetical protein GGTG_11287 [Gaeumannomyces graminis var.
tritici R3-111a-1]
Length = 577
Score = 45.1 bits (105), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 43/185 (23%), Positives = 78/185 (42%), Gaps = 26/185 (14%)
Query: 346 LDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKI 405
+DF +I Q E+++V+ ++ GR + R+ R+L K G+ E + + K KI
Sbjct: 401 VDFRPLIRKIQESELDTVIERKIGRHSLRLIRILRKRGKADEK-SLPMQAMMAKGTVHKI 459
Query: 406 LYKLWKDGYLLMEKLVVTGAR--QSQFLLWKVNRQILWKHVLDEMFHAALNL-------- 455
+ ++ G++ ++++ R +S LW + +LD + L
Sbjct: 460 MLEMQMHGFVDVQEVPKDNTRNAKSTIFLWFCVTDLSLTQLLDNTYKTMLRCLQVRDVHR 519
Query: 456 -----SLRVSYELD---REKELLNLPADKRTGPLQDRYNRIRKVRILLESSQMKLDDAIL 507
LR D REKE L DRY+R R + + M+LDD +
Sbjct: 520 QNAREVLRFVGRADVKGREKEALE-------KKYFDRYDRYRSIEDKMLGHVMRLDDLVG 572
Query: 508 LFHDF 512
+ +D+
Sbjct: 573 VLNDY 577
>gi|154277094|ref|XP_001539392.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|206558266|sp|A6R9K6.1|RPC3_AJECN RecName: Full=DNA-directed RNA polymerase III subunit rpc3;
Short=RNA polymerase III subunit C3
gi|150414465|gb|EDN09830.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 649
Score = 45.1 bits (105), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 41/155 (26%), Positives = 73/155 (47%), Gaps = 28/155 (18%)
Query: 2 LTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQ 61
+++Y + +IT++FG+L A PL R + + T LS QV++ L VLIQQ
Sbjct: 1 MSQYAAELCKLLITDNFGELYA----------PLPR--IVQNTRLSPRQVRHGLAVLIQQ 48
Query: 62 NCVQAFTTEQPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLL 121
+ +T+ DG A Y + + VR + L ++ ++ + +++ +L
Sbjct: 49 RLIYHYTSLD-DGIA-------YYEASWMTAYNLVRSGRILQLVEEKLGKYVAKVLSTIL 100
Query: 122 EHGRL------TLKQMFDRAKSSEKEGNLVDLDSL 150
HG + TL ++ R + S K G LV + L
Sbjct: 101 YHGHVRISYLETLPEL--RPQVSSKAGKLVAANGL 133
>gi|238879751|gb|EEQ43389.1| conserved hypothetical protein [Candida albicans WO-1]
Length = 590
Score = 44.7 bits (104), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 34/153 (22%), Positives = 72/153 (47%), Gaps = 14/153 (9%)
Query: 15 TNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQPDG 74
T H G++ + + L+ G LT + + T++ + +K+AL+ LIQ NC+ + E+
Sbjct: 19 TTHLGEIASCIISILISNGRLTAREISNRTKIPIKNIKSALVSLIQLNCIYYWQEEKDRK 78
Query: 75 FADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTLKQMF-- 132
F K ++LF V + + +++ + E++Q +L HG + ++
Sbjct: 79 FYYSLKETG--LLLF------VYSGDIINHIKRQYGEDEAEIIQNILIHGHVKIEDYLTQ 130
Query: 133 ---DRAKSSEKEGNLVDLDSLRETLVKLVTAHY 162
D++ ++E + L + L+KL H+
Sbjct: 131 FNHDKSMKIDQENKFLKLFN-DNWLIKLQDYHF 162
>gi|294893388|ref|XP_002774447.1| hypothetical protein Pmar_PMAR006028 [Perkinsus marinus ATCC 50983]
gi|239879840|gb|EER06263.1| hypothetical protein Pmar_PMAR006028 [Perkinsus marinus ATCC 50983]
Length = 667
Score = 44.7 bits (104), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 74/164 (45%), Gaps = 42/164 (25%)
Query: 10 AVH-----VITNHFGDLVAKVCECLLRKGPLTRQNVKRYT--ELS-------DEQV---- 51
AVH +IT+ FG V+ V CLL +GP+ + +Y ELS D +V
Sbjct: 26 AVHKLCCDIITDQFGPAVSAVASCLLSRGPMRFPELSKYVNEELSWPLDLRTDAKVPHSM 85
Query: 52 ------------KNALLVLIQQNCVQAFTTEQ---PDGFADGPKANTQYVVLF----DNI 92
++AL++L+Q N + Q P G A Q++VL+ +
Sbjct: 86 HEITNRMTWSCIRDALMILLQNNIAVSHMVRQVQVPSQEKAG--APPQHLVLYSASPSAV 143
Query: 93 LHRVRFAKFLTILSQEFDQQ---CVELVQGLLEHGRLTLKQMFD 133
+ R+R+ +++ ++ Q+ ++ V ++ +L GR+ + +
Sbjct: 144 IARLRYPRYMNLVQQQLGRRRPVAVHVMAEVLRRGRVPWDDLIE 187
>gi|302658985|ref|XP_003021188.1| DNA directed RNA polymerase III subunit Rpc82, putative
[Trichophyton verrucosum HKI 0517]
gi|291185075|gb|EFE40570.1| DNA directed RNA polymerase III subunit Rpc82, putative
[Trichophyton verrucosum HKI 0517]
Length = 683
Score = 44.7 bits (104), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 30/127 (23%), Positives = 65/127 (51%), Gaps = 3/127 (2%)
Query: 346 LDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKI 405
++F + ++ E+E +V RYG A R+ R+L+ GRL E ++ + + + KD +I
Sbjct: 507 VEFRHLARKLRHLEIERLVESRYGSVAVRVLRVLADKGRLDEK-RLQEISLMPSKDLRQI 565
Query: 406 LYKLWKDGYLLMEKLVVTGARQSQ--FLLWKVNRQILWKHVLDEMFHAALNLSLRVSYEL 463
L +L G++ ++++ RQ LW + + ++++ + + R++YE
Sbjct: 566 LARLQSGGFIDLQEVPRDAQRQPSRTIYLWFYDADRVVMMLIEDTYKSMARCLQRLAYER 625
Query: 464 DREKELL 470
+ K L+
Sbjct: 626 SKLKALI 632
>gi|302505627|ref|XP_003014520.1| DNA directed RNA polymerase III subunit Rpc82, putative
[Arthroderma benhamiae CBS 112371]
gi|291178341|gb|EFE34131.1| DNA directed RNA polymerase III subunit Rpc82, putative
[Arthroderma benhamiae CBS 112371]
Length = 684
Score = 44.7 bits (104), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 30/127 (23%), Positives = 65/127 (51%), Gaps = 3/127 (2%)
Query: 346 LDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKI 405
++F + ++ E+E +V RYG A R+ R+L+ GRL E ++ + + + KD +I
Sbjct: 508 VEFRHLARKLRHLEIERLVESRYGSVAVRVLRVLADKGRLDEK-RLQEISLMPSKDLRQI 566
Query: 406 LYKLWKDGYLLMEKLVVTGARQSQ--FLLWKVNRQILWKHVLDEMFHAALNLSLRVSYEL 463
L +L G++ ++++ RQ LW + + ++++ + + R++YE
Sbjct: 567 LARLQSGGFIDLQEVPRDAQRQPSRTIYLWFYDADRVVMMLIEDTYKSMARCLQRLAYER 626
Query: 464 DREKELL 470
+ K L+
Sbjct: 627 SKLKALI 633
>gi|326479889|gb|EGE03899.1| DNA-directed RNA polymerase III subunit RPC3 [Trichophyton equinum
CBS 127.97]
Length = 649
Score = 44.7 bits (104), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 30/127 (23%), Positives = 65/127 (51%), Gaps = 3/127 (2%)
Query: 346 LDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKI 405
++F + ++ E+E +V RYG A R+ R+L+ GRL E ++ + + + KD +I
Sbjct: 473 VEFRHLARKLRHLEIERLVESRYGSVAVRVLRVLADKGRLDE-KRLQEISLMPSKDLRQI 531
Query: 406 LYKLWKDGYLLMEKLVVTGARQSQ--FLLWKVNRQILWKHVLDEMFHAALNLSLRVSYEL 463
L +L G++ ++++ RQ LW + + ++++ + + R++YE
Sbjct: 532 LARLQSGGFIDLQEVPRDAQRQPSRTIYLWFYDADRVVMMLIEDTYKSMARCLQRLAYER 591
Query: 464 DREKELL 470
+ K L+
Sbjct: 592 SKLKPLI 598
Score = 43.5 bits (101), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 61/135 (45%), Gaps = 18/135 (13%)
Query: 2 LTEYGTKHAVHVITNHFGDLVAKVCECLLRKG--PLTRQNVKRYTELSDEQVKNALLVLI 59
+++Y + +I ++FG+L + + L+ G PL R + T LS Q+K+ L VLI
Sbjct: 1 MSQYAAELCTLLIADNFGELYSLIFSYLVHHGRQPLMR--IVHNTHLSPRQIKHGLAVLI 58
Query: 60 QQNCVQAFTTEQPDGFADGP---KANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVEL 116
QQ + +T GF DG +AN + L VR L + + ++
Sbjct: 59 QQQLIFHYT-----GFEDGVSYYQANWRAAYLL------VRSGSILQLTRERLGDYAAKV 107
Query: 117 VQGLLEHGRLTLKQM 131
V +L G + + +
Sbjct: 108 VSTILSLGHVKISHL 122
>gi|327300751|ref|XP_003235068.1| DNA-directed RNA polymerase III subunit Rpc3 [Trichophyton rubrum
CBS 118892]
gi|326462420|gb|EGD87873.1| DNA-directed RNA polymerase III subunit Rpc3 [Trichophyton rubrum
CBS 118892]
Length = 651
Score = 44.7 bits (104), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 30/127 (23%), Positives = 65/127 (51%), Gaps = 3/127 (2%)
Query: 346 LDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKI 405
++F + ++ E+E +V RYG A R+ R+L+ GRL E ++ + + + KD +I
Sbjct: 475 VEFRHLARKLRHLEIERLVESRYGSVAVRVLRVLADKGRLDEK-RLQEISLMPSKDLRQI 533
Query: 406 LYKLWKDGYLLMEKLVVTGARQSQ--FLLWKVNRQILWKHVLDEMFHAALNLSLRVSYEL 463
L +L G++ ++++ RQ LW + + ++++ + + R++YE
Sbjct: 534 LARLQSGGFIDLQEVPRDAQRQPSRTIYLWFYDADRVVMMLIEDTYKSMARCLQRLAYER 593
Query: 464 DREKELL 470
+ K L+
Sbjct: 594 SKLKPLI 600
Score = 42.4 bits (98), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 61/135 (45%), Gaps = 18/135 (13%)
Query: 2 LTEYGTKHAVHVITNHFGDLVAKVCECLLRKG--PLTRQNVKRYTELSDEQVKNALLVLI 59
+++Y + +I ++FG+L + + L+ G PL R + T LS QVK+ L VLI
Sbjct: 1 MSQYVAELCTLLIADNFGELYSLIFSYLVHHGRQPLMR--IVHNTHLSPRQVKHGLAVLI 58
Query: 60 QQNCVQAFTTEQPDGFADGP---KANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVEL 116
QQ + +T GF DG +AN + L VR L + + ++
Sbjct: 59 QQQLIFHYT-----GFEDGVSYYQANWRAAYLL------VRSGSILQLTRERLGDYAAKV 107
Query: 117 VQGLLEHGRLTLKQM 131
V +L G + + +
Sbjct: 108 VSTILSLGHVKISHL 122
>gi|326468627|gb|EGD92636.1| DNA-directed RNA polymerase III subunit Rpc3 [Trichophyton
tonsurans CBS 112818]
Length = 613
Score = 44.7 bits (104), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 30/127 (23%), Positives = 65/127 (51%), Gaps = 3/127 (2%)
Query: 346 LDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKI 405
++F + ++ E+E +V RYG A R+ R+L+ GRL E ++ + + + KD +I
Sbjct: 437 VEFRHLARKLRHLEIERLVESRYGSVAVRVLRVLADKGRLDE-KRLQEISLMPSKDLRQI 495
Query: 406 LYKLWKDGYLLMEKLVVTGARQSQ--FLLWKVNRQILWKHVLDEMFHAALNLSLRVSYEL 463
L +L G++ ++++ RQ LW + + ++++ + + R++YE
Sbjct: 496 LARLQSGGFIDLQEVPRDAQRQPSRTIYLWFYDADRVVMMLIEDTYKSMARCLQRLAYER 555
Query: 464 DREKELL 470
+ K L+
Sbjct: 556 SKLKPLI 562
Score = 43.5 bits (101), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 61/135 (45%), Gaps = 18/135 (13%)
Query: 2 LTEYGTKHAVHVITNHFGDLVAKVCECLLRKG--PLTRQNVKRYTELSDEQVKNALLVLI 59
+++Y + +I ++FG+L + + L+ G PL R + T LS Q+K+ L VLI
Sbjct: 1 MSQYAAELCTLLIADNFGELYSLIFSYLVHHGRQPLMR--IVHNTHLSPRQIKHGLAVLI 58
Query: 60 QQNCVQAFTTEQPDGFADGP---KANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVEL 116
QQ + +T GF DG +AN + L VR L + + ++
Sbjct: 59 QQQLIFHYT-----GFEDGVSYYQANWRAAYLL------VRSGSILQLTRERLGDYAAKV 107
Query: 117 VQGLLEHGRLTLKQM 131
V +L G + + +
Sbjct: 108 VSTILSLGHVKISHL 122
>gi|315048453|ref|XP_003173601.1| DNA-directed RNA polymerase III subunit RPC3 [Arthroderma gypseum
CBS 118893]
gi|311341568|gb|EFR00771.1| DNA-directed RNA polymerase III subunit RPC3 [Arthroderma gypseum
CBS 118893]
Length = 651
Score = 44.3 bits (103), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 62/135 (45%), Gaps = 18/135 (13%)
Query: 2 LTEYGTKHAVHVITNHFGDLVAKVCECLLRKG--PLTRQNVKRYTELSDEQVKNALLVLI 59
+++Y + +I ++FG+L + + L++ G PL R + T LS QVK+ L +LI
Sbjct: 1 MSQYAAELCTLLIADNFGELYSLIFSYLVQHGRQPLMR--IVHNTNLSPRQVKHGLAILI 58
Query: 60 QQNCVQAFTTEQPDGFADGP---KANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVEL 116
QQ + +T GF DG +AN + L VR L + + ++
Sbjct: 59 QQQLIFHYT-----GFEDGVSYYQANWRAAYLL------VRSGSILQLTRERLGDYAAKV 107
Query: 117 VQGLLEHGRLTLKQM 131
V +L G + + +
Sbjct: 108 VSAILSLGHVKISHL 122
Score = 43.9 bits (102), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 30/127 (23%), Positives = 65/127 (51%), Gaps = 3/127 (2%)
Query: 346 LDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKI 405
++F + ++ E+E +V RYG A R+ R+L+ GRL E ++ + + + KD +I
Sbjct: 475 VEFRHLARKLRHLEIERLVESRYGTVAVRVLRVLADKGRLDEK-RLQEISLMPSKDLRQI 533
Query: 406 LYKLWKDGYLLMEKLVVTGARQSQ--FLLWKVNRQILWKHVLDEMFHAALNLSLRVSYEL 463
L +L G++ ++++ RQ LW + + ++++ + + R++YE
Sbjct: 534 LARLQSGGFIDLQEVPRDAQRQPSRTIYLWFYDADRVVMMLVEDTYKSMARCLQRLAYER 593
Query: 464 DREKELL 470
+ K L+
Sbjct: 594 GKLKTLI 600
>gi|84996465|ref|XP_952954.1| hypothetical protein [Theileria annulata strain Ankara]
gi|65303951|emb|CAI76330.1| hypothetical protein, conserved [Theileria annulata]
Length = 465
Score = 44.3 bits (103), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 43/185 (23%), Positives = 84/185 (45%), Gaps = 17/185 (9%)
Query: 2 LTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQ 61
L EY ++VI +FG L ++V LL +GP++ + + + + +NAL++LI+
Sbjct: 3 LIEYDL--VLYVIEYYFGRLTSRVTSQLLLRGPISLPKLVNPKKFNFKVFRNALVILIRH 60
Query: 62 NCVQ-AFTTEQPDGFADGPKANTQ--YVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQ 118
V+ +F T GP+ T Y V +N L L ++ D C +++
Sbjct: 61 GIVEYSFETT-----TIGPRLVTHLLYSVNINNALSMFLIPSILLNCKEQLDDDCYKVLL 115
Query: 119 GLLEHGRLTLKQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISE 178
+ ++G T +++ +S + GN V + L L+ +H++ + + L+
Sbjct: 116 HISKYGITTPRKI---KESLPELGNYV----ISNCLFNLINSHFIVPVDSFDQLMNKQKG 168
Query: 179 EEGPA 183
E P
Sbjct: 169 HEYPC 173
>gi|241958266|ref|XP_002421852.1| DNA-directed RNA polymerase III subunit, putative [Candida
dubliniensis CD36]
gi|223645197|emb|CAX39796.1| DNA-directed RNA polymerase III subunit, putative [Candida
dubliniensis CD36]
Length = 610
Score = 44.3 bits (103), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 31/136 (22%), Positives = 66/136 (48%), Gaps = 15/136 (11%)
Query: 15 TNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQPDG 74
T H G++ + + L+ G LT + + T++ + +K+AL+ LIQ NC+ + ++
Sbjct: 24 TTHLGEIASCIISILISNGRLTAKEISNRTKIPFKNIKSALVSLIQLNCIYYWQEDKNGK 83
Query: 75 FADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTLK----- 129
F K ++LF V + + +++ + E++Q +L HG + ++
Sbjct: 84 FYYSLKETG--LLLF------VYSGDIINHIKRQYGDEEAEIIQNILIHGHVKIEDYLNQ 135
Query: 130 --QMFDRAKSSEKEGN 143
Q D++KS+ + N
Sbjct: 136 FNQQDDKSKSNSMKIN 151
>gi|322710712|gb|EFZ02286.1| DNA-directed RNA polymerase III subunit rpc3 [Metarhizium
anisopliae ARSEF 23]
Length = 680
Score = 44.3 bits (103), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 35/178 (19%), Positives = 81/178 (45%), Gaps = 12/178 (6%)
Query: 346 LDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKI 405
+DFE +++ + E+++ + + +GR R+ R+L + G+L E + ++K D
Sbjct: 504 VDFELLMDRLRESELDAYIEQSFGRHGLRLTRILREKGKLDEK-MLPSAALMKKGDVQGK 562
Query: 406 LYKLWKDGYLLMEKLVVTGARQSQ--FLLWKVNRQILWKHVLDEMFHAALNLSLRVSYEL 463
+ + G + ++++ +R + W + + + +LD+++ L + E
Sbjct: 563 MLAMQMAGLVDVQEVPKDNSRLANRTLFFWFFDGERVQSQLLDDVYKGMLRCLQTLDVER 622
Query: 464 DREKELLNLPADK---------RTGPLQDRYNRIRKVRILLESSQMKLDDAILLFHDF 512
+E+ +L K T ++YNR + + L M+LDD + +F D+
Sbjct: 623 HKERNILTFVERKDVKGKEEEVMTAEHYNKYNRHLEGQQKLLGQVMRLDDMVAVFRDY 680
Score = 40.0 bits (92), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 46/101 (45%), Gaps = 8/101 (7%)
Query: 24 KVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQPDGFADGPKANT 83
++ L KG T + ++ L ++N L VLIQQN + +T PD T
Sbjct: 52 RILVALFTKGRCTLSQLVQHVSLGPRHLRNGLGVLIQQNLLYHYT--DPD------TGGT 103
Query: 84 QYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHG 124
Y D + VR K L +++ ++ +LVQ L++ G
Sbjct: 104 SYEANSDACYNLVRSGKILEVINSQYGTAERDLVQTLMQLG 144
>gi|121717643|ref|XP_001276111.1| DNA directed RNA polymerase III subunit Rpc82, putative
[Aspergillus clavatus NRRL 1]
gi|206558078|sp|A1C4R7.1|RPC3_ASPCL RecName: Full=DNA-directed RNA polymerase III subunit rpc3;
Short=RNA polymerase III subunit C3
gi|119404309|gb|EAW14685.1| DNA directed RNA polymerase III subunit Rpc82, putative
[Aspergillus clavatus NRRL 1]
Length = 635
Score = 44.3 bits (103), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 33/142 (23%), Positives = 69/142 (48%), Gaps = 5/142 (3%)
Query: 333 NMTLDHVRASLVQ--LDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDK 390
N+T + + L+ ++F + ++ E+E ++ RYG A R+ R+L G+L E +
Sbjct: 444 NLTSKRIVSGLITWTVEFRHLARKLRHLELERMIEARYGDVALRVVRVLHAKGKLDEK-R 502
Query: 391 ISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTGARQSQ--FLLWKVNRQILWKHVLDEM 448
+ + + + KD ++L + G++ ++++ RQ LW + + VL +
Sbjct: 503 LQEISLLPFKDLRQVLASMQAGGFVDLQEVPRDAQRQPSRTIYLWYYDPDRICNSVLQDT 562
Query: 449 FHAALNLSLRVSYELDREKELL 470
+ A R+ +E +R KE L
Sbjct: 563 YKAMSRCFQRLRFERNRLKEFL 584
>gi|258571533|ref|XP_002544570.1| predicted protein [Uncinocarpus reesii 1704]
gi|237904840|gb|EEP79241.1| predicted protein [Uncinocarpus reesii 1704]
Length = 652
Score = 44.3 bits (103), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 74/156 (47%), Gaps = 15/156 (9%)
Query: 2 LTEYGTKHAVHVITNHFGDLVAKVCECLLRKG--PLTRQNVKRYTELSDEQVKNALLVLI 59
+++Y + +IT++FG+L + + LL G PL R + + T LS QVK+ L+VLI
Sbjct: 1 MSQYAAELCKLLITDNFGELYSLIFSYLLHHGRQPLPR--IVQNTHLSPRQVKHGLVVLI 58
Query: 60 QQNCVQAFTTEQPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQG 119
QQ+ V T+ F DG T Y + + VR KF ++ + +
Sbjct: 59 QQHLVFHCTS-----FDDGI---TYYESDWRAAYNLVRPGKFTQLVKNRLGKHAARVFST 110
Query: 120 LLE--HGRLT-LKQMFDRAKSSEKEGNLVDLDSLRE 152
+L H +++ L+ + + SE G + ++ E
Sbjct: 111 ILSLGHAKISYLESLPELQPGSEPAGKMNGVNGTHE 146
>gi|345560340|gb|EGX43465.1| hypothetical protein AOL_s00215g201 [Arthrobotrys oligospora ATCC
24927]
Length = 627
Score = 43.9 bits (102), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 58/117 (49%), Gaps = 8/117 (6%)
Query: 13 VITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQP 72
++ + +G+L ++V LL G T + R ++ + VK L+VLIQQ+ V +T E
Sbjct: 12 LVRDTYGELSSRVVAALLEYGRSTLYTIVRRVKIPERVVKQTLVVLIQQHLVLHYTNE-- 69
Query: 73 DGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQG--LLEHGRLT 127
DG D ++ +++ +LH R + + + F + ++ LL H R++
Sbjct: 70 DGGRDATHYECNWLQIYE-LLHSGRMVR---TIEERFGSEAASVISNFLLLGHARVS 122
Score = 38.9 bits (89), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 62/119 (52%), Gaps = 3/119 (2%)
Query: 346 LDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKI 405
+D +K+ E + E+E +V +R+G A R+ R++ G++ E ++DT + +KD
Sbjct: 451 VDTQKLCEALRIRELEQIVEERFGGIATRLVRIIKDKGKMDEKG-LADTALLRQKDIRAH 509
Query: 406 LYKLWKDGYLLMEKLVVTGAR--QSQFLLWKVNRQILWKHVLDEMFHAALNLSLRVSYE 462
L L + G+L ++++ T R F + + ++ +L++ + A + R+ +E
Sbjct: 510 LGVLHERGFLHIQEVPKTAERLPARTFYFFYFDEKMSKMAMLNDFYKAMSRILQRIDHE 568
>gi|401424695|ref|XP_003876833.1| conserved hypothetical protein [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322493076|emb|CBZ28361.1| conserved hypothetical protein [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 604
Score = 43.9 bits (102), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 32/136 (23%), Positives = 64/136 (47%), Gaps = 10/136 (7%)
Query: 338 HVRASLVQLDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFV 397
H +++ +D + + Q E VV RYG RI +LL + LE +++ +
Sbjct: 399 HSQSNFYAIDHVTAVHLLQETVCERVVYSRYGVLGVRIMKLLLQH-HFLEERTLAEQSVA 457
Query: 398 EKKDAPKILYKLWKDGYLLMEKLVVTGA-----RQSQFLLWKVNRQILWKHVLDEMFHAA 452
++L++++KDG+LL +++ T A ++ LW ++ W L +
Sbjct: 458 TYVKVREVLHQMFKDGFLLQQEVPRTSALVERPAKASVYLWGLS----WSATLLPVVRER 513
Query: 453 LNLSLRVSYELDREKE 468
L +L +++E RE +
Sbjct: 514 LAKTLTIAWEKLREAQ 529
>gi|451995146|gb|EMD87615.1| hypothetical protein COCHEDRAFT_1184836 [Cochliobolus
heterostrophus C5]
Length = 679
Score = 43.9 bits (102), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 51/108 (47%), Gaps = 11/108 (10%)
Query: 18 FGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQPDGFAD 77
+G+L ++V L R G + ++ R + L+ Q+K L++L+QQ+ + F
Sbjct: 23 YGELASRVYSVLARHGRQSLASIARASYLNARQIKYGLVILLQQHLI----------FHS 72
Query: 78 GPKAN-TQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHG 124
G A T Y + + N VRF K ++ F ++ ++ LL G
Sbjct: 73 GSDAPLTYYEIDWQNSYAIVRFGKVTKLVEDRFGKKAANVMSNLLALG 120
Score = 38.5 bits (88), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 65/138 (47%), Gaps = 7/138 (5%)
Query: 338 HVRASLVQ--LDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTT 395
H RA Q ++F++I EVE+ +S R G ++ R L K GRL E I +
Sbjct: 486 HSRAGFSQWHIEFDEIARQMIQNEVENTISARKGTLGVKLIRALRKKGRLDER-AICNVM 544
Query: 396 FVEKKDAPKILYKLWKDGYLLMEKLVVTG---ARQSQFLLWKVNRQILWKHVLDEMFHAA 452
+ D I+ L G + +++ A+ S L+W +RQ + +L + +
Sbjct: 545 MMSANDIRGIVNDLTVQGIVQTQEIPKVDRREAKHSLHLVW-YDRQRAREKLLHDTYKGM 603
Query: 453 LNLSLRVSYELDREKELL 470
+ + R++YE ++ + LL
Sbjct: 604 VRILQRIAYEREKVQFLL 621
>gi|344304130|gb|EGW34379.1| DNA-directed RNA polymerase III subunit RPC3 [Spathaspora
passalidarum NRRL Y-27907]
Length = 602
Score = 43.9 bits (102), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 25/110 (22%), Positives = 55/110 (50%), Gaps = 7/110 (6%)
Query: 17 HFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQPDGFA 76
H G++ + + CL+ G LT + + + T++ + +K+AL+ L+Q NCV +T++
Sbjct: 26 HLGEVASCIISCLISNGRLTSKELSQRTKIPLKSIKSALVSLVQLNCVYYWTSK------ 79
Query: 77 DGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRL 126
D K Y + +L + + + + + E++Q +L +G +
Sbjct: 80 DSAKT-VHYSLNESGLLAFIHSGDIIQHIKERYGDDAAEIIQNVLINGHV 128
>gi|336468974|gb|EGO57137.1| hypothetical protein NEUTE1DRAFT_130844 [Neurospora tetrasperma
FGSC 2508]
gi|350288719|gb|EGZ69944.1| RNA polymerase III subunit C3 [Neurospora tetrasperma FGSC 2509]
Length = 624
Score = 43.9 bits (102), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 79/360 (21%), Positives = 141/360 (39%), Gaps = 64/360 (17%)
Query: 18 FGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQPDGFAD 77
+G L A+V L ++G L+ + + ++++LS QVKN L VL Q N + F + D
Sbjct: 19 YGQLPARVYATLFQRGKLSVRLISQFSKLSARQVKNGLCVLQQHNLL--FYS------VD 70
Query: 78 GPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTLKQMF----- 132
+Y V + + VR K L ++ + +++Q LL G+ + +
Sbjct: 71 ANSGEAEYSVNHEYAYNLVRTGKILEMVDNSYGPAGRDVMQNLLLLGQTRISDLVAAYQA 130
Query: 133 -------DRAKSSEKEGNLV--DLDSLRETLVKLV--------------TAHYVERCPAS 169
D A ++K+ LV L L +L+ +AH +E+
Sbjct: 131 KINEVNNDDAWLNDKKPELVIKSKAQLNSVLCRLIEAELIDVIHSKTFQSAHEIEKQVHR 190
Query: 170 EPLLMPISEEEGPARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEK 229
E + + P KG+K+ + EQ+V E + ++ + + G
Sbjct: 191 E-----VMDVYFPNGIKGTKAKVE------FEQRVAEGLRKVREESKTLKRKLAQNGGAS 239
Query: 230 EK------NSNNVTPGEKRKHDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVR 283
++ N N P E+ D D + V+ R N+E I LR + + +V
Sbjct: 240 KRRKLAVGNETNGAPEEEEDLD-------PALDPRQVI-RINYEKCIVELRSRRLVQYVN 291
Query: 284 AHLDDGAANVLSAMLQATSSAEKKVKTKNSVPLSLSSIYEEVIKSEAGRNMTLDHVRASL 343
L + V +L+ + K + S PL + EE + N LD V+ S+
Sbjct: 292 ETLGETTGYVYGQLLKQLT---KNISRCRSDPLMDTLTPEEKVTPSVTTNEILDKVKTSI 348
>gi|225713960|gb|ACO12826.1| DNA-directed RNA polymerase III subunit RPC3 [Lepeophtheirus
salmonis]
Length = 497
Score = 43.5 bits (101), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 29/130 (22%), Positives = 67/130 (51%), Gaps = 4/130 (3%)
Query: 345 QLDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPK 404
++F+ + E + ++VV +++G A RIFR++ +S + +E +++ + K+
Sbjct: 292 HMNFKSLFEQLVHATFDNVVLEKFGSKALRIFRVI-RSHKRIEESALANLVMIPAKETKL 350
Query: 405 ILYKLWKDGYLLMEKL---VVTGARQSQFLLWKVNRQILWKHVLDEMFHAALNLSLRVSY 461
+ YKL ++ ++ +++L V + A F L+ ++ + + V + F A N R +
Sbjct: 351 LTYKLLENNFIQLQELRKSVASNAVAKGFYLFYIDTDSVARMVRELCFKAIGNCIFRKDH 410
Query: 462 ELDREKELLN 471
E + LL+
Sbjct: 411 EFSIHQRLLD 420
>gi|367017192|ref|XP_003683094.1| hypothetical protein TDEL_0H00240 [Torulaspora delbrueckii]
gi|359750758|emb|CCE93883.1| hypothetical protein TDEL_0H00240 [Torulaspora delbrueckii]
Length = 632
Score = 43.5 bits (101), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 58/128 (45%), Gaps = 8/128 (6%)
Query: 17 HFGDLVAKVCECLLRKGPLTRQNVK-RYTELSDEQVKNALLVLIQQNCVQAFTTEQPDGF 75
H G+ + + + LL KG L+ ++ R +L ++ L+ LIQ CV+ + P G
Sbjct: 48 HLGERASSIIDVLLSKGRLSVFEIQERLPDLDTRSIRTTLVSLIQLRCVKYWEETTPTG- 106
Query: 76 ADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQ--CVELVQGLLEHGRLTLKQMFD 133
+ T Y D +L + + +SQ+F Q +++Q +L G +T +
Sbjct: 107 ----RTITYYYANEDGLLLFLYSGLIIDEVSQQFQQSKLAAQIMQNILTLGSVTTEDFLQ 162
Query: 134 RAKSSEKE 141
K S+ E
Sbjct: 163 NCKDSKNE 170
>gi|344233379|gb|EGV65251.1| hypothetical protein CANTEDRAFT_102848 [Candida tenuis ATCC 10573]
Length = 590
Score = 43.5 bits (101), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 28/123 (22%), Positives = 58/123 (47%), Gaps = 10/123 (8%)
Query: 13 VITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQP 72
V NH G + A V L+ G LT +++ + T+ + VK +L+ LIQ NCV
Sbjct: 22 VTKNHLGSVAAVVVSTLISHGRLTAKDISKKTKFPLKTVKTSLVSLIQLNCVLY------ 75
Query: 73 DGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTLKQMF 132
+ +G + + Y +L + + + + + +D + ++Q L++ G + ++ +
Sbjct: 76 --WQEGERVD--YTFHEQGLLVLLHSGQIINHIRETYDHESAAIIQNLIQIGSIRVEDLV 131
Query: 133 DRA 135
A
Sbjct: 132 KDA 134
>gi|451845886|gb|EMD59197.1| hypothetical protein COCSADRAFT_127652 [Cochliobolus sativus
ND90Pr]
Length = 679
Score = 43.5 bits (101), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 51/108 (47%), Gaps = 11/108 (10%)
Query: 18 FGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQPDGFAD 77
+G+L ++V L R G + ++ R + L+ Q+K L++L+QQ+ + F
Sbjct: 23 YGELASRVYSVLARHGRQSLASIARASYLNARQIKYGLVILLQQHLI----------FHS 72
Query: 78 GPKAN-TQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHG 124
G A T Y + + N VRF K ++ F ++ ++ LL G
Sbjct: 73 GNDAPLTYYEIDWQNSYAIVRFGKVTKLVEDRFGKKAANVMSNLLALG 120
>gi|303319265|ref|XP_003069632.1| RNA polymerase III subunit RPC82 family protein [Coccidioides
posadasii C735 delta SOWgp]
gi|240109318|gb|EER27487.1| RNA polymerase III subunit RPC82 family protein [Coccidioides
posadasii C735 delta SOWgp]
Length = 653
Score = 43.5 bits (101), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 59/125 (47%), Gaps = 12/125 (9%)
Query: 2 LTEYGTKHAVHVITNHFGDLVAKVCECLLRKG--PLTRQNVKRYTELSDEQVKNALLVLI 59
+++Y + +IT++FG+L A + LL G PL R + + T LS QVK+ L VL+
Sbjct: 1 MSQYAAELCKLLITDNFGELYALIFIYLLNHGRQPLPR--IVQNTHLSPRQVKHGLAVLV 58
Query: 60 QQNCVQAFTTEQPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQG 119
QQ+ V T DG T Y + + + VR K + ++ + +V
Sbjct: 59 QQHLV-FHCTSLDDGI-------TYYESNWRSAYNLVRSGKIIQLVEERLGNHAASIVST 110
Query: 120 LLEHG 124
LL G
Sbjct: 111 LLALG 115
>gi|452986792|gb|EME86548.1| hypothetical protein MYCFIDRAFT_43158, partial [Pseudocercospora
fijiensis CIRAD86]
Length = 602
Score = 43.5 bits (101), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 65/132 (49%), Gaps = 12/132 (9%)
Query: 13 VITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQP 72
+I G L +++ L G LTR +++ T + Q+++AL VLIQQ+ + TTE+
Sbjct: 13 LIEESCGHLSSQIFLALADNGRLTRWQLQQTTRIPARQLRHALAVLIQQHLLLHNTTEEG 72
Query: 73 DGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLE--HGRLT-LK 129
F Y V + N + +R +++ + + ++V L++ H R+ L
Sbjct: 73 LTF---------YHVDWRNAYYTLRSNSIISLTRDRYGESAAKIVTSLIQLGHARVGDLA 123
Query: 130 QMFDRAKSSEKE 141
Q FD +++++
Sbjct: 124 QAFDFTSTTKRD 135
>gi|389601866|ref|XP_001566025.2| conserved hypothetical protein [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|322505218|emb|CAM45549.2| conserved hypothetical protein [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 602
Score = 43.1 bits (100), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 61/131 (46%), Gaps = 10/131 (7%)
Query: 343 LVQLDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDA 402
L LD +++ Q E VV RYG RI RLL + LE +++ + A
Sbjct: 402 LYALDDVTAVQLLQEAVCERVVYSRYGVLGVRIMRLLLQH-HFLEERTLAEQSVATYVKA 460
Query: 403 PKILYKLWKDGYLLMEKLVVTGA-----RQSQFLLWKVNRQILWKHVLDEMFHAALNLSL 457
++L++++KDG+LL +++ T A ++ LW ++ W L L +L
Sbjct: 461 REVLHRMFKDGFLLQQEVPRTSALVERSAKASVYLWGLS----WSATLLPAVRERLAKTL 516
Query: 458 RVSYELDREKE 468
+++ RE +
Sbjct: 517 TIAWVKLREAQ 527
>gi|171690080|ref|XP_001909972.1| hypothetical protein [Podospora anserina S mat+]
gi|170944995|emb|CAP71106.1| unnamed protein product [Podospora anserina S mat+]
Length = 644
Score = 42.7 bits (99), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 45/191 (23%), Positives = 86/191 (45%), Gaps = 18/191 (9%)
Query: 336 LDHVRASLVQLDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTT 395
L H A +DF ++ + E+++ + GR+ R+ R+L G+L E I
Sbjct: 458 LRHCGAEEWTVDFVPLMAALRQAEIDATIENTVGREGVRLVRMLRAKGKLDEK-AIMSVA 516
Query: 396 FVEKKDAPKILYKLWKDGYLLMEKLV--VTGARQSQFLLWKVNRQILWKHVLDEMFHAAL 453
+ K D K L ++ K G++ +++ + F LW + + + +LD + +
Sbjct: 517 LMRKADMSKKLAEMHKYGFVQTQEVPREAKADVKKSFFLWYFDGTMALERILDVSYKTMI 576
Query: 454 NLSLRVSYELDREKELLNLPADKRTGPLQDRYNRIRKV------------RILLESSQMK 501
+ SL+V L REK+ L KR+ +++RK+ R+LL Q +
Sbjct: 577 H-SLQVLDTL-REKDQHVLSLIKRSDVKGQEDDKLRKIHKEKLTQFLKLERMLLGQIQ-R 633
Query: 502 LDDAILLFHDF 512
+DD + + D+
Sbjct: 634 VDDLVAVLRDY 644
>gi|341876865|gb|EGT32800.1| hypothetical protein CAEBREN_14755 [Caenorhabditis brenneri]
Length = 542
Score = 42.7 bits (99), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 105/517 (20%), Positives = 192/517 (37%), Gaps = 92/517 (17%)
Query: 4 EYGTKHAVHVITNHFGDLVAKVCECLLRKG-PLTRQNVKRYTELSDEQVKNALLVLIQQN 62
+Y T+ V +I + FG +VAKV E +L++ L +K +++ +K AL LI
Sbjct: 5 KYETQMCVIIIEDIFGKIVAKVMETILKESCQLATLMLKLKGQMTTVLIKKALTTLINF- 63
Query: 63 CVQAFTTEQPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLE 122
F T D YV D I + + + I + + L+
Sbjct: 64 ---GFVTFNLDN-----NHRATYVADADQIQYVISAPRACLIAKTLYGPTAESICIELIS 115
Query: 123 HGRLTLKQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEGP 182
GRLT+ + R K++++ D+ + +L +H++ R P P+ E
Sbjct: 116 QGRLTVSETIRRIKAADESAVWSDI---KNAFGELAASHFLIRVP-------PVESE--- 162
Query: 183 ARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGEKR 242
G P+ + A AM +++ E++ E + +N KR
Sbjct: 163 ----------IYGCPQFV------ANFDPFAMPNAIMEKNETNSSELSTSDSN---SRKR 203
Query: 243 KHDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCID------------HVRAHLDDG- 289
K D D + +R N+ F LR + ID H+ ++G
Sbjct: 204 KADSSPEDA-----DAGQYWRLNWVRFNGYLRDELIIDYLIGGESTATMTHLNVKREEGE 258
Query: 290 ---AANVLSAMLQATSSAEKKVKTKNSVPLSLSSIYEEV--------------------- 325
+ + Q + K+ + PLSL +I V
Sbjct: 259 EVPQVDRTQYITQNVAHLMFKINETRANPLSLENITASVTDLQRLVRENSLDLAKPDIEL 318
Query: 326 -----IKSEAGRNMTLDHVRASLVQLDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLS 380
+ G L L +D I ES++ +++ A R+ RLL
Sbjct: 319 ACQILVDESDGIVRKLGDSNGGLYTVDIRHAIRQICRHHCESLIREQFEGRAIRVMRLL- 377
Query: 381 KSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTGARQS--QFLLWKVNRQ 438
+S L+ +++ + + K+A ++LY L ++GY+ + + + Q F L+ V+
Sbjct: 378 ESRHYLDEEQVEKLSMMSGKEAREMLYALVEEGYVFNKPVGRSTDFQPARTFYLYYVDLP 437
Query: 439 ILWKHVLDEMFHAALNLSLRVSYELDREKELLNLPAD 475
+ +++ NL LR +E K LL+ A+
Sbjct: 438 RTVRGLVEYNCKLVRNLILRQRHERAENKALLDKDAN 474
>gi|313230088|emb|CBY07792.1| unnamed protein product [Oikopleura dioica]
Length = 281
Score = 42.7 bits (99), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Query: 350 KIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKL 409
K++E + V +S +YG DA +I LL + G E ++ T +++KDA ++LY+L
Sbjct: 72 KMVEKMVQQCVLQWISTKYGMDARKIMALLFE-GNYFEPKNVAKTCVMDEKDANQVLYRL 130
Query: 410 WKDGYLLMEKLVVTG 424
DG + + + G
Sbjct: 131 MNDGLVSFQDMTPAG 145
>gi|308499707|ref|XP_003112039.1| hypothetical protein CRE_29652 [Caenorhabditis remanei]
gi|308268520|gb|EFP12473.1| hypothetical protein CRE_29652 [Caenorhabditis remanei]
Length = 543
Score = 42.7 bits (99), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 100/517 (19%), Positives = 199/517 (38%), Gaps = 95/517 (18%)
Query: 4 EYGTKHAVHVITNHFGDLVAKVCECLLRKG-PLTRQNVKRYTELSDEQVKNALLVLIQQN 62
+Y T+ V ++ + FG +V+KV E LL + L K ++ +K +L LI
Sbjct: 5 KYETQMCVIIVEDIFGKIVSKVLETLLNESCQLATLVYKLKGQIKTVLIKKSLSTLINF- 63
Query: 63 CVQAFTTEQPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLE 122
F T F+ T YV ++I + + + I + + L+
Sbjct: 64 ---GFVT-----FSLDTNNRTTYVADSEHIQYMISAPRACLIAKTLYGPSAESICIELIS 115
Query: 123 HGRLTLKQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEGP 182
GRLT+ + R K++++ + +++ + +LV ++++ R PA E SE G
Sbjct: 116 QGRLTISETIRRIKATDETA---EFSNIKHSFEELVKSNFLIRVPAVE------SEIHGC 166
Query: 183 ARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGEKR 242
Q + + P A+ +++ E V E +++ + KR
Sbjct: 167 P-------------------QFITSFDPF-ALPTAIMEKKEEKVDE---STDTASTSRKR 203
Query: 243 KHDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQATS 302
K D D + ++ N+ F LR + ID++ + G+ ++ M
Sbjct: 204 KADSTPSDA-----DAGQYWKINWSRFNGYLRDELIIDYL---IGGGSTATMTHMNHKKG 255
Query: 303 SAEKKVKTK-------------NSV---PLSLSSIYEEV--------------------- 325
E +T+ N V PLS+ SI +
Sbjct: 256 EEEDGDRTQYITQNVAHLMFKMNEVRAKPLSMDSITVSITDLQRLVRENELNLSKPDIEF 315
Query: 326 -----IKSEAGRNMTLDHVRASLVQLDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLS 380
+ G + L +D I ES++ +++ A R+ RLL
Sbjct: 316 ACQILVDESDGIVRKVGESNGGLYTVDIRHAIRQICRHHCESLIREQFEGRAIRVMRLL- 374
Query: 381 KSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTGARQS--QFLLWKVNRQ 438
++ L+ +++ + + K+A ++LY L ++GY+ + + + Q F L+ V+
Sbjct: 375 ENRHFLDEEQVEKLSMMSGKEAREMLYALVEEGYVFNKPVGRSNDFQPARTFYLYYVDLP 434
Query: 439 ILWKHVLDEMFHAALNLSLRVSYELDREKELLNLPAD 475
+ +++ NL +R +E K+LL+ A+
Sbjct: 435 RTVRGLVEYTCKLVRNLVIRQRHERTENKQLLDKDAN 471
>gi|119182545|ref|XP_001242401.1| hypothetical protein CIMG_06297 [Coccidioides immitis RS]
gi|121754656|sp|Q1DTR6.1|RPC3_COCIM RecName: Full=DNA-directed RNA polymerase III subunit RPC-3;
Short=RNA polymerase III subunit C3
gi|392865296|gb|EAS31079.2| DNA-directed RNA polymerase III subunit RPC-3 [Coccidioides immitis
RS]
Length = 653
Score = 42.7 bits (99), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 60/125 (48%), Gaps = 12/125 (9%)
Query: 2 LTEYGTKHAVHVITNHFGDLVAKVCECLLRKG--PLTRQNVKRYTELSDEQVKNALLVLI 59
+++Y + +IT++FG+L A + LL G PL R + + T LS QV++ L VL+
Sbjct: 1 MSQYAAELCKLLITDNFGELYALIFIYLLNHGRQPLPR--IVQNTHLSPRQVRHGLAVLV 58
Query: 60 QQNCVQAFTTEQPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQG 119
QQ+ V T DG T Y + + + VR K + ++ + + +V
Sbjct: 59 QQHLV-FHCTSLDDGI-------TYYESNWRSAYNLVRSGKIIQLVEERLGNRAASIVST 110
Query: 120 LLEHG 124
LL G
Sbjct: 111 LLALG 115
>gi|336275208|ref|XP_003352357.1| hypothetical protein SMAC_07798 [Sordaria macrospora k-hell]
gi|380088461|emb|CCC13616.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 625
Score = 42.7 bits (99), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 54/108 (50%), Gaps = 8/108 (7%)
Query: 18 FGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQPDGFAD 77
+G L A+V L ++G L+ + + ++++L+ QVKN L VL Q N + F T D
Sbjct: 19 YGQLPARVYATLFQRGKLSIRLITQFSKLNARQVKNGLCVLQQHNLL--FYT------VD 70
Query: 78 GPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGR 125
+Y V ++ + VR K L ++ + +++Q LL G+
Sbjct: 71 ANSGEAEYSVNHESAYNLVRAGKILEMVDNSYGPAGRDVMQNLLLLGQ 118
Score = 38.9 bits (89), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 41/180 (22%), Positives = 84/180 (46%), Gaps = 16/180 (8%)
Query: 346 LDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKI 405
+DF+ ++E + E++S++ + GR R+ R+L G+L E + + + K D +
Sbjct: 449 VDFKPLMENLRATELDSIIEQTCGRQGLRLTRILRTKGKLGE-QALQSLSLMRKVDLQQK 507
Query: 406 LYKLWKDGYLLMEKLVVTGAR--QSQFLLWKVNRQILWKHVLDEMFHAALNLSLRVSYEL 463
+ ++ G+ +++ + LW + + + ++ + + A + L+V E+
Sbjct: 508 MLEMRLAGFAHTQEVPRDNKADPKKSIFLWYCDTEQAYSGLIAKCY-ATMVHCLQV-LEV 565
Query: 464 DREKELLNLPADKRT---GPLQD--------RYNRIRKVRILLESSQMKLDDAILLFHDF 512
R+KE L KRT G +D R+ + K LL + M++DD + L DF
Sbjct: 566 RRQKEKAVLSLAKRTNVKGKEKDMMRDESYARFAKFLKDEKLLMAEVMRIDDTLALLQDF 625
>gi|429857629|gb|ELA32486.1| RNA polymerase iii subunit rpc82 [Colletotrichum gloeosporioides
Nara gc5]
Length = 653
Score = 42.4 bits (98), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 34/179 (18%), Positives = 83/179 (46%), Gaps = 14/179 (7%)
Query: 346 LDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKI 405
+DF+ ++E + EV++V+ + +GR R+ R+L G+L E + ++K+D
Sbjct: 477 VDFKPLMEGLKQTEVDAVIEQSFGRHGLRLTRILRDKGKLDEK-MLPSLALMKKQDVQGK 535
Query: 406 LYKLWKDGYLLMEKLVVTGARQS--QFLLWKVNRQILWKHVLDEMFHAALNLSLRVSYEL 463
+ + G++ ++++ +R + W + + + ++D+ + L +
Sbjct: 536 MLAMQMAGFVDVQEVPKDASRTATRTMFFWFFDIERIESQLVDDYYKTMLRCLQNLEVHR 595
Query: 464 DREKELLNLPADKR----------TGPLQDRYNRIRKVRILLESSQMKLDDAILLFHDF 512
RE+ +L+ ++R T ++Y+ ++ L M+LDD + +F D+
Sbjct: 596 YRERNILSF-VERRDVKGKEEEVMTAEHYNKYSTFLDLQSKLLGHVMRLDDLVSVFRDY 653
Score = 41.2 bits (95), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 32/136 (23%), Positives = 64/136 (47%), Gaps = 11/136 (8%)
Query: 1 MLTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQ 60
++T++G + H++ + G+L A++ L KG + + T L+ Q+++ L VL+Q
Sbjct: 2 LVTKHGAELCAHLVNDICGELPARILAVLFSKGRSNIATLVQSTGLNPRQLRHGLAVLVQ 61
Query: 61 QNCVQAFTTEQPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGL 120
Q+ V + D Y D + R K + ++ E+ E+VQ +
Sbjct: 62 QSLVYHQS--------DSSNTTGVYEANPDGCYNLCRTGKIIEMVGIEYGPAEQEVVQTI 113
Query: 121 LE--HGRLT-LKQMFD 133
++ H R++ L Q F+
Sbjct: 114 MQLGHARVSDLAQAFE 129
>gi|154331522|ref|XP_001561579.1| conserved hypothetical protein [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|134058897|emb|CAM41465.1| conserved hypothetical protein [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 329
Score = 42.4 bits (98), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 61/131 (46%), Gaps = 10/131 (7%)
Query: 343 LVQLDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDA 402
L LD +++ Q E VV RYG RI RLL + LE +++ + A
Sbjct: 129 LYALDDVTAVQLLQEAVCERVVYSRYGVLGVRIMRLLLQH-HFLEERTLAEQSVATYVKA 187
Query: 403 PKILYKLWKDGYLLMEKLVVTGA-----RQSQFLLWKVNRQILWKHVLDEMFHAALNLSL 457
++L++++KDG+LL +++ T A ++ LW ++ W L L +L
Sbjct: 188 REVLHRMFKDGFLLQQEVPRTSALVERSAKASVYLWGLS----WSATLLPAVRERLAKTL 243
Query: 458 RVSYELDREKE 468
+++ RE +
Sbjct: 244 TIAWVKLREAQ 254
>gi|154319039|ref|XP_001558837.1| hypothetical protein BC1G_02471 [Botryotinia fuckeliana B05.10]
gi|206558269|sp|A6RPU8.1|RPC3_BOTFB RecName: Full=DNA-directed RNA polymerase III subunit rpc3;
Short=RNA polymerase III subunit C3
Length = 637
Score = 42.4 bits (98), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 36/178 (20%), Positives = 86/178 (48%), Gaps = 12/178 (6%)
Query: 346 LDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKI 405
+DFE++I+ + E++S++ + +G+ +R+ R++ K G+ LE I+ ++++D+
Sbjct: 461 VDFERVIDRLRESELDSIIYENFGQIGHRLVRVMRKMGK-LEEKHIAKLALIKQQDSRTT 519
Query: 406 LYKLWKDGYLLMEKLVVTGARQ--SQFLLWKVNRQILWKHVLDEMFHAALNLSLRVSYEL 463
L + G + ++++ R LW + + +LD + A R+ E
Sbjct: 520 LVNMQMHGMVDIQEVPRDTGRMIVRTIHLWFCDEDRVTSLLLDRTYKAMSRCLQRLDVEK 579
Query: 464 DREKELLNLPADKRTGPLQDRY------NRIRKVRILLES--SQM-KLDDAILLFHDF 512
R+ ++ L ++ + N++R++R E Q+ +LD+ + +F D+
Sbjct: 580 RRKANIIALSERTDVQGQEEAFLRPEQMNQLREIRAKEEDLLGQICRLDELVGIFQDY 637
>gi|367034616|ref|XP_003666590.1| hypothetical protein MYCTH_2311408 [Myceliophthora thermophila ATCC
42464]
gi|347013863|gb|AEO61345.1| hypothetical protein MYCTH_2311408 [Myceliophthora thermophila ATCC
42464]
Length = 670
Score = 42.4 bits (98), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 43/180 (23%), Positives = 83/180 (46%), Gaps = 16/180 (8%)
Query: 346 LDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKI 405
+DF ++ + E++SV+ + GR R+ R+L G+L E + + + K + +
Sbjct: 494 VDFGPVMNSLREAELDSVIERTCGRQGLRLVRILRAKGKLDEK-ALPNVALMRKPELQQK 552
Query: 406 LYKLWKDGYLLMEKLV--VTGARQSQFLLWKVNRQILWKHVLDEMFHAALNLSLRVSYEL 463
+ ++ G++ ++++ V + F LW + K +LD + ++ L+V E
Sbjct: 553 MLEMQTAGFVSVQEVPRDVKADVKKSFFLWYCDIDRSLKRLLDTSYRTMVH-CLQV-LEA 610
Query: 464 DREKELLNLPADKRT---GPLQD--------RYNRIRKVRILLESSQMKLDDAILLFHDF 512
R+KE L KRT G +D RY+R L + M++DD + + DF
Sbjct: 611 LRQKERDVLETTKRTDVRGRERDIMRKSYYERYSRFLDCERKLFAQVMRIDDLVSVLRDF 670
>gi|85078174|ref|XP_956123.1| hypothetical protein NCU03560 [Neurospora crassa OR74A]
gi|74622578|sp|Q8WZW7.1|RPC3_NEUCR RecName: Full=DNA-directed RNA polymerase III subunit rpc-3;
Short=RNA polymerase III subunit C3
gi|18376039|emb|CAD21045.1| related to DNA-directed RNA polymerase III chain RPC82 [Neurospora
crassa]
gi|28917171|gb|EAA26887.1| predicted protein [Neurospora crassa OR74A]
Length = 624
Score = 42.0 bits (97), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 80/360 (22%), Positives = 140/360 (38%), Gaps = 64/360 (17%)
Query: 18 FGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQPDGFAD 77
+G L A+V L ++G L+ + + ++++LS QVKN L VL Q N + F + D
Sbjct: 19 YGQLPARVYATLFQRGKLSVRLISQFSKLSARQVKNGLCVLQQHNLL--FYS------VD 70
Query: 78 GPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTLKQMFDRAKS 137
+Y V + + VR K L ++ + +++Q LL G+ + + ++
Sbjct: 71 ANSGEAEYSVNHEYAYNLVRTGKILEMVDNSYGPAGRDVMQNLLLLGQTRISDLVAAYQA 130
Query: 138 SEKEGNLVDL--------------DSLRETLVKLV--------------TAHYVERCPAS 169
E N D L L +L+ +AH +E+
Sbjct: 131 KINEVNNDDAWLNDKKPELAIKSKAQLNSVLCRLIEAELIDVIHSKTFQSAHEIEKQVHR 190
Query: 170 EPLLMPISEEEGPARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEK 229
E +M + G KG+K+ KI EQ+V E + ++ + + G
Sbjct: 191 E--VMDVYFSNGI---KGTKA--KI----EFEQRVAEGLRKVREESKTLKRKLAQNGGAS 239
Query: 230 EK------NSNNVTPGEKRKHDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVR 283
++ N N P E+ D D + V+ R N+E I LR + + +V
Sbjct: 240 KRRKLAVGNETNGAPEEEEDLD-------PALDPRQVI-RINYEKCIVELRSRRLVQYVN 291
Query: 284 AHLDDGAANVLSAMLQATSSAEKKVKTKNSVPLSLSSIYEEVIKSEAGRNMTLDHVRASL 343
L + V +L+ + K + S PL + EE + N LD V+ S+
Sbjct: 292 ETLGETTGYVYGQLLKQLT---KNISRCKSDPLIDALTPEEKVTPSVTTNEILDKVKTSI 348
>gi|389593619|ref|XP_003722063.1| conserved hypothetical protein [Leishmania major strain Friedlin]
gi|321438565|emb|CBZ12325.1| conserved hypothetical protein [Leishmania major strain Friedlin]
Length = 604
Score = 42.0 bits (97), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 31/136 (22%), Positives = 63/136 (46%), Gaps = 10/136 (7%)
Query: 338 HVRASLVQLDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFV 397
H +++ +D + + Q E VV RYG RI +LL + LE +++ +
Sbjct: 399 HSQSNFYAIDHVTAVHLLQEAVCERVVYSRYGVLGVRIMKLLLQH-HFLEERTLAEQSIA 457
Query: 398 EKKDAPKILYKLWKDGYLLMEKLVVTGA-----RQSQFLLWKVNRQILWKHVLDEMFHAA 452
++L++++KDG+LL +++ T A ++ LW ++ W L +
Sbjct: 458 TYVKVREVLHQMFKDGFLLQQEVPRTSALVERSAKASVYLWGLS----WSATLLPVVRER 513
Query: 453 LNLSLRVSYELDREKE 468
L +L +++ RE +
Sbjct: 514 LAKTLTIAWAKLREAQ 529
>gi|195036890|ref|XP_001989901.1| GH18539 [Drosophila grimshawi]
gi|193894097|gb|EDV92963.1| GH18539 [Drosophila grimshawi]
Length = 522
Score = 42.0 bits (97), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 28/129 (21%), Positives = 62/129 (48%), Gaps = 5/129 (3%)
Query: 346 LDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKI 405
+D E E VESV+++R+G A RIFR++ + + +E + + + K+A +
Sbjct: 315 IDMEHAFESLAFACVESVITERFGSKATRIFRVI-RFKKYIEQEDLQKEAMIPAKEAKSL 373
Query: 406 LYKLWKDGYL----LMEKLVVTGARQSQFLLWKVNRQILWKHVLDEMFHAALNLSLRVSY 461
Y L+++ ++ + + F L+++ + + +LD + + N R ++
Sbjct: 374 AYNLFQEQFIHVKVIKKPGGGGSGPAKAFYLFQIKEKDTVRMLLDNCYKSLYNTIRRSNF 433
Query: 462 ELDREKELL 470
E + K L+
Sbjct: 434 EKNEHKGLI 442
Score = 39.3 bits (90), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 30/155 (19%), Positives = 72/155 (46%), Gaps = 8/155 (5%)
Query: 13 VITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQP 72
++ FG +V V +CL T + T+L+ ++V AL VLI+ V+ F +
Sbjct: 12 ILEQCFGQVVQAVADCLFSATTRTLSQIVSTTQLARKEVALALAVLIKFRLVR-FEPSKS 70
Query: 73 DGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTLKQMF 132
+ F +Y + ++++ +R+++++ ++ ++ + + LL G T
Sbjct: 71 NQFL------PEYSLKREDVICLLRYSRYIHLVQTKYGNVGASIAEELLNSGSETATSCL 124
Query: 133 DRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCP 167
+ S+ + ++ R T ++++ HY+ + P
Sbjct: 125 LKCL-SDGDNKAESAETYRTTFIQMIADHYIIKTP 158
>gi|391874457|gb|EIT83339.1| RNA polymerase III (C) subunit [Aspergillus oryzae 3.042]
Length = 653
Score = 42.0 bits (97), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 30/127 (23%), Positives = 62/127 (48%), Gaps = 3/127 (2%)
Query: 346 LDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKI 405
++F + ++ E+E ++ RYG A R+ R+L G+L E ++ + + + KD ++
Sbjct: 477 VEFRHLARKLRHLELERIIEARYGDVALRVVRVLHDKGKLDEK-RLQEISLLPFKDLRQV 535
Query: 406 LYKLWKDGYLLMEKLVVTGARQSQ--FLLWKVNRQILWKHVLDEMFHAALNLSLRVSYEL 463
L + G++ ++++ RQ LW + + VL++ + A R+ +E
Sbjct: 536 LASMQTGGFVDLQEVPRDALRQPSKTIFLWFYDPDRVGNSVLEDTYKAMSRCLQRLRFER 595
Query: 464 DREKELL 470
R KE L
Sbjct: 596 SRLKEFL 602
>gi|341039022|gb|EGS24014.1| hypothetical protein CTHT_0007250 [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 662
Score = 42.0 bits (97), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 44/180 (24%), Positives = 83/180 (46%), Gaps = 16/180 (8%)
Query: 346 LDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKI 405
+DFE +++ + E++SV+ + GR R+ R+L G+L E + + + K + +
Sbjct: 486 VDFEPVMKALREAELDSVIERTSGRQGLRLVRILRAKGKLDEK-ALPNVALMRKSELQQK 544
Query: 406 LYKLWKDGYLLMEKLV--VTGARQSQFLLWKVNRQILWKHVLDEMFHAALNLSLRVSYEL 463
+ ++ G++ ++++ V + F LW + + +L+ + L+ L+V E
Sbjct: 545 MLEMQTAGFVHVQEVPRDVKADVKKSFFLWYCDVEKSLSRLLETSYVTMLH-CLQV-LEA 602
Query: 464 DREKELLNLPADKRT---GPLQD--------RYNRIRKVRILLESSQMKLDDAILLFHDF 512
R KE L KRT G +D RY R L + M+LDD + + DF
Sbjct: 603 LRRKEKDVLQTTKRTDVRGREKDAMRKEYYERYARFLACERKLFAQVMRLDDLVSVLRDF 662
>gi|169776609|ref|XP_001822771.1| DNA-directed RNA polymerase III subunit RPC-3 [Aspergillus oryzae
RIB40]
gi|238503327|ref|XP_002382897.1| DNA directed RNA polymerase III subunit Rpc82, putative
[Aspergillus flavus NRRL3357]
gi|121800841|sp|Q2U9X7.1|RPC3_ASPOR RecName: Full=DNA-directed RNA polymerase III subunit rpc3;
Short=RNA polymerase III subunit C3
gi|83771506|dbj|BAE61638.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|220691707|gb|EED48055.1| DNA directed RNA polymerase III subunit Rpc82, putative
[Aspergillus flavus NRRL3357]
Length = 653
Score = 42.0 bits (97), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 30/127 (23%), Positives = 62/127 (48%), Gaps = 3/127 (2%)
Query: 346 LDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKI 405
++F + ++ E+E ++ RYG A R+ R+L G+L E ++ + + + KD ++
Sbjct: 477 VEFRHLARKLRHLELERIIEARYGDVALRVVRVLHDKGKLDEK-RLQEISLLPFKDLRQV 535
Query: 406 LYKLWKDGYLLMEKLVVTGARQSQ--FLLWKVNRQILWKHVLDEMFHAALNLSLRVSYEL 463
L + G++ ++++ RQ LW + + VL++ + A R+ +E
Sbjct: 536 LASMQTGGFVDLQEVPRDALRQPSKTIFLWFYDPDRVGNSVLEDTYKAMSRCLQRLRFER 595
Query: 464 DREKELL 470
R KE L
Sbjct: 596 SRLKEFL 602
>gi|67902570|ref|XP_681541.1| hypothetical protein AN8272.2 [Aspergillus nidulans FGSC A4]
gi|40739820|gb|EAA59010.1| hypothetical protein AN8272.2 [Aspergillus nidulans FGSC A4]
Length = 566
Score = 41.6 bits (96), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 41/193 (21%), Positives = 87/193 (45%), Gaps = 14/193 (7%)
Query: 333 NMTLDHVRASLVQ--LDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDK 390
N+T + ++ ++F + ++ E+E +V RYG A R+ R+L G+L E +
Sbjct: 375 NLTSKRLNGGIINWTVEFRHLARKLRHLELERIVEARYGDVALRVLRVLQAKGKLDEK-R 433
Query: 391 ISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTGARQSQ--FLLWKVNRQILWKHVLDEM 448
+ + + + KD ++L + G++ ++++ RQ LW + +L +
Sbjct: 434 LQEISLLPFKDLRQVLASMQTGGFVDLQEVPRDAQRQPSRTIYLWYYDPDRARDSMLQDT 493
Query: 449 FHAALNLSLRVSYELDREKELL------NLPADKRTGPLQDRYNRIRKVR---ILLESSQ 499
+ A R+ +E R K+ L ++ ++ + +R+R+ R LL
Sbjct: 494 YKAMSRCLQRLKFERGRLKDFLEKTERSDVKGNEELYLSEGELDRLREWRAKEALLIGEV 553
Query: 500 MKLDDAILLFHDF 512
+LDD I + D+
Sbjct: 554 ARLDDMIAVMRDY 566
>gi|327357371|gb|EGE86228.1| RNA polymerase III subunit RPC82 [Ajellomyces dermatitidis ATCC
18188]
Length = 664
Score = 41.6 bits (96), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 39/157 (24%), Positives = 77/157 (49%), Gaps = 18/157 (11%)
Query: 2 LTEYGTKHAVHVITNHFGDLVAKVCECLLR--KGPLTRQNVKRYTELSDEQVKNALLVLI 59
+++Y + +IT++FG+L + + LL + PL R + + T LS QV++ L VLI
Sbjct: 1 MSQYAAELCKLLITDNFGELYSLIFSYLLYHDRQPLPR--IVQNTRLSPRQVRHGLAVLI 58
Query: 60 QQNCVQAFTTEQPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQG 119
QQ+ + +T+ DG T Y + + VR + L + ++ + +++
Sbjct: 59 QQHLIYHYTSLD-DGI-------TYYEASWRTAYNLVRSGRILQFVEKKLGEYAGKVLAT 110
Query: 120 L--LEHGRL----TLKQMFDRAKSSEKEGNLVDLDSL 150
+ L H R+ TL ++ +A S ++G L+ +
Sbjct: 111 ILYLGHARISYLETLPELRPQATSKARKGATNGLNGV 147
>gi|261194549|ref|XP_002623679.1| RNA polymerase III subunit RPC82 [Ajellomyces dermatitidis
SLH14081]
gi|239588217|gb|EEQ70860.1| RNA polymerase III subunit RPC82 [Ajellomyces dermatitidis
SLH14081]
Length = 664
Score = 41.6 bits (96), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 39/157 (24%), Positives = 77/157 (49%), Gaps = 18/157 (11%)
Query: 2 LTEYGTKHAVHVITNHFGDLVAKVCECLLR--KGPLTRQNVKRYTELSDEQVKNALLVLI 59
+++Y + +IT++FG+L + + LL + PL R + + T LS QV++ L VLI
Sbjct: 1 MSQYAAELCKLLITDNFGELYSLIFSYLLYHDRQPLPR--IVQNTRLSPRQVRHGLAVLI 58
Query: 60 QQNCVQAFTTEQPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQG 119
QQ+ + +T+ DG T Y + + VR + L + ++ + +++
Sbjct: 59 QQHLIYHYTSLD-DGI-------TYYEASWRTAYNLVRSGRILQFVEKKLGEYAGKVLAT 110
Query: 120 L--LEHGRL----TLKQMFDRAKSSEKEGNLVDLDSL 150
+ L H R+ TL ++ +A S ++G L+ +
Sbjct: 111 ILYLGHARISYLETLPELRPQATSKARKGATNGLNGV 147
>gi|353526281|sp|Q5ATV8.2|RPC3_EMENI RecName: Full=DNA-directed RNA polymerase III subunit rpc3;
Short=RNA polymerase III subunit C3
gi|259481063|tpe|CBF74254.1| TPA: DNA-directed RNA polymerase III subunit rpc3 (RNA polymerase
III subunit C3) [Source:UniProtKB/Swiss-Prot;Acc:Q5ATV8]
[Aspergillus nidulans FGSC A4]
Length = 623
Score = 41.6 bits (96), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 41/193 (21%), Positives = 87/193 (45%), Gaps = 14/193 (7%)
Query: 333 NMTLDHVRASLVQ--LDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDK 390
N+T + ++ ++F + ++ E+E +V RYG A R+ R+L G+L E +
Sbjct: 432 NLTSKRLNGGIINWTVEFRHLARKLRHLELERIVEARYGDVALRVLRVLQAKGKLDEK-R 490
Query: 391 ISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTGARQSQ--FLLWKVNRQILWKHVLDEM 448
+ + + + KD ++L + G++ ++++ RQ LW + +L +
Sbjct: 491 LQEISLLPFKDLRQVLASMQTGGFVDLQEVPRDAQRQPSRTIYLWYYDPDRARDSMLQDT 550
Query: 449 FHAALNLSLRVSYELDREKELL------NLPADKRTGPLQDRYNRIRKVR---ILLESSQ 499
+ A R+ +E R K+ L ++ ++ + +R+R+ R LL
Sbjct: 551 YKAMSRCLQRLKFERGRLKDFLEKTERSDVKGNEELYLSEGELDRLREWRAKEALLIGEV 610
Query: 500 MKLDDAILLFHDF 512
+LDD I + D+
Sbjct: 611 ARLDDMIAVMRDY 623
>gi|389592804|ref|XP_003721673.1| conserved hypothetical protein [Leishmania major strain Friedlin]
gi|321438205|emb|CBZ11958.1| conserved hypothetical protein [Leishmania major strain Friedlin]
Length = 377
Score = 41.6 bits (96), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 31/136 (22%), Positives = 63/136 (46%), Gaps = 10/136 (7%)
Query: 338 HVRASLVQLDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFV 397
H +++ +D + + Q E VV RYG RI +LL + LE +++ +
Sbjct: 107 HSQSNFYAVDHVTAVHLLQEAVCERVVHSRYGVLGVRIMKLLLQH-HFLEERTLAEQSIA 165
Query: 398 EKKDAPKILYKLWKDGYLLMEKLVVTGA-----RQSQFLLWKVNRQILWKHVLDEMFHAA 452
++L++++KDG+LL +++ T A ++ LW ++ W L +
Sbjct: 166 TYVKVREVLHQMFKDGFLLQQEVPRTSALVERSAKASVYLWGLS----WSATLLPVVRER 221
Query: 453 LNLSLRVSYELDREKE 468
L +L +++ RE +
Sbjct: 222 LAKTLTIAWAKLREAQ 237
>gi|307174179|gb|EFN64824.1| DNA-directed RNA polymerase III subunit RPC3 [Camponotus
floridanus]
Length = 500
Score = 41.2 bits (95), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 80/449 (17%), Positives = 175/449 (38%), Gaps = 91/449 (20%)
Query: 2 LTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQ 61
+ ++ +K + ++ +FG++V + LL T ++ +T L +VK L VLI+
Sbjct: 1 MKDFQSKLCMLLLEEYFGNIVQCIGNSLLHSRK-TLDVIRLHTNLPLIKVKEGLCVLIKY 59
Query: 62 NCVQAFTTEQPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLL 121
F T Q D K + YV+ + I+ +R+ +++ + +++ +L
Sbjct: 60 ----GFVTYQQD-----EKGSVHYVLHCEKIIMLLRYPRYMLFAKTYCRDEGEIMLEEVL 110
Query: 122 EHGRLTLKQMFDRA-----KSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPI 176
+HG +T ++ + ++ K + + +L+ T LV + L+ I
Sbjct: 111 KHGYITASEVIIKTYKRLEETPSKCAEQLSVANLKNTFELLVKNQF---------LMHSI 161
Query: 177 SEEEGPARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNV 236
S T+++ + + + + + ++N+ N
Sbjct: 162 S-------------------FNTMKENIEKPEYNLPHLNMTAISNI--------LQGQNA 194
Query: 237 TPGEKRKHDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSA 296
PG+ + + ++ NF+ F + R K + + D A ++
Sbjct: 195 DPGDNK-----------------LYWKVNFDRFTQDFRDKIMVSAMTQRFDINAGELMRQ 237
Query: 297 MLQATSSAEKKVKTKNSVPLSLSSIYEEVIK-SEAGRNMTLDHVRASLVQLDFEKIIEIA 355
++ T S P+ + I EEV K + LD L++ D + I+
Sbjct: 238 LINLMY-LRTAPWTATSNPIPYTEIKEEVKKLTFLELEQYLDQY-LRLIEEDSSQFIKRV 295
Query: 356 QNE-------------------EVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTF 396
+ +ES+V++R+G A RIFRL+ + + + D+I
Sbjct: 296 GDSGGGQYSVNMKNAFKQLVWATIESIVAERFGSKAARIFRLV-RIEKNVNLDQIQQLAM 354
Query: 397 VEKKDAPKILYKLWKDGYLLMEKLVVTGA 425
+ K+A + Y L ++ ++ M+++ G
Sbjct: 355 IPAKEAKCLTYILAQENFIQMQEIKKAGT 383
>gi|146075711|ref|XP_001462768.1| conserved hypothetical protein [Leishmania infantum JPCM5]
gi|134066847|emb|CAM65309.1| conserved hypothetical protein, partial [Leishmania infantum JPCM5]
Length = 328
Score = 40.8 bits (94), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 31/136 (22%), Positives = 63/136 (46%), Gaps = 10/136 (7%)
Query: 338 HVRASLVQLDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFV 397
H +++ +D + + Q E VV RYG RI +LL + LE +++ +
Sbjct: 123 HSQSNFYAIDHVTAVHLLQEAVCERVVYSRYGVLGVRIMKLLLQH-HFLEERTLAEQSIA 181
Query: 398 EKKDAPKILYKLWKDGYLLMEKLVVTGA-----RQSQFLLWKVNRQILWKHVLDEMFHAA 452
++L++++KDG+LL +++ T A ++ LW ++ W L +
Sbjct: 182 TYVKVREVLHQMFKDGFLLQQEVPRTSALVERSAKASVYLWGLS----WSATLLPVVRER 237
Query: 453 LNLSLRVSYELDREKE 468
L +L +++ RE +
Sbjct: 238 LAKTLTIAWAKLREAQ 253
>gi|119498711|ref|XP_001266113.1| DNA directed RNA polymerase III subunit Rpc82, putative
[Neosartorya fischeri NRRL 181]
gi|206558087|sp|A1CZP6.1|RPC3_NEOFI RecName: Full=DNA-directed RNA polymerase III subunit rpc3;
Short=RNA polymerase III subunit C3
gi|119414277|gb|EAW24216.1| DNA directed RNA polymerase III subunit Rpc82, putative
[Neosartorya fischeri NRRL 181]
Length = 655
Score = 40.8 bits (94), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 68/142 (47%), Gaps = 5/142 (3%)
Query: 333 NMTLDHVRASLVQ--LDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDK 390
N+T + + L+ ++F + ++ E+E ++ RYG A R+ R+L G+L E +
Sbjct: 464 NLTSKRMVSGLITWTVEFRHLARKLRHLELERMIEARYGDVALRVVRVLHAKGKLDEK-R 522
Query: 391 ISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTGARQSQ--FLLWKVNRQILWKHVLDEM 448
+ + + + KD ++L + G++ ++++ RQ LW + + VL +
Sbjct: 523 LQEISLLPFKDLRQVLASMQAGGFVDLQEVPRDAQRQPSRTIYLWYYDPDRICNSVLQDT 582
Query: 449 FHAALNLSLRVSYELDREKELL 470
+ A R+ +E R K+ L
Sbjct: 583 YKAMSRCLQRLRFERSRIKDFL 604
Score = 39.3 bits (90), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 51/112 (45%), Gaps = 8/112 (7%)
Query: 13 VITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQP 72
++ +FG+L ++ L R L +K Y+EL + Q+ AL +IQQ+ V +T+
Sbjct: 32 LVEENFGELFGRIFATLSRYDRLNLPRLKAYSELPNRQLLPALAAMIQQHLVYHYTS--- 88
Query: 73 DGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHG 124
+ DG T Y + + VR K L + + + ++ ++ G
Sbjct: 89 --YDDGV---TYYEANMQSAYYLVRSGKILEFVEERLGKYAATVLSTIMNLG 135
>gi|46107524|ref|XP_380821.1| hypothetical protein FG00645.1 [Gibberella zeae PH-1]
Length = 635
Score = 40.8 bits (94), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 33/178 (18%), Positives = 82/178 (46%), Gaps = 12/178 (6%)
Query: 346 LDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKI 405
+DF++++ + E+++++ + +GR R+ R+L + G+L E + ++K D
Sbjct: 459 VDFDRLVGKLRETELDAIIEQSHGRHGLRLTRILREKGKLDEK-MLPAAALMKKGDVQGK 517
Query: 406 LYKLWKDGYLLMEKLVVTGARQSQ--FLLWKVNRQILWKHVLDEMFHAALNLSLRVSYEL 463
+ + G + ++++ +R + W +++ LD+++ A L + E
Sbjct: 518 MLAMQMAGIVDVQEVPKDSSRLANRTLFFWYFDKERAQTQALDDIYKAMLRCLQTLEVER 577
Query: 464 DREKELLNLPADK---------RTGPLQDRYNRIRKVRILLESSQMKLDDAILLFHDF 512
+E+ +L+ K T ++YN +V+ L M+LD+ + + D+
Sbjct: 578 HKERNILSFVERKDVQGKEEEVMTAEHYNKYNTHLEVQNKLLGQLMRLDELVSVLRDY 635
Score = 40.4 bits (93), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 60/133 (45%), Gaps = 14/133 (10%)
Query: 7 TKHAVHV----ITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQN 62
TKHA + + + G+L +++ LL KG T + ++T L+ ++N L VLIQQN
Sbjct: 4 TKHAAELCALLVNDLHGELPSRILNALLTKGRSTIAQLIQHTSLTLRYLRNGLAVLIQQN 63
Query: 63 CVQAFTTEQPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLE 122
+ T T Y D + +R K L ++ ++ EL Q L++
Sbjct: 64 LIYHHTDTN-------NNNVTNYQANADACYNLIRSGKILDVIETQYGTAERELTQTLIQ 116
Query: 123 --HGRLT-LKQMF 132
H R+ L Q F
Sbjct: 117 LGHARIADLSQAF 129
>gi|159126152|gb|EDP51268.1| DNA directed RNA polymerase III subunit Rpc82, putative
[Aspergillus fumigatus A1163]
Length = 626
Score = 40.8 bits (94), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 68/142 (47%), Gaps = 5/142 (3%)
Query: 333 NMTLDHVRASLVQ--LDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDK 390
N+T + + L+ ++F + ++ E+E ++ RYG A R+ R+L G+L E +
Sbjct: 435 NLTSKRMVSGLITWTVEFRHLARKLRHLELERMIEARYGDVALRVVRVLHAKGKLDEK-R 493
Query: 391 ISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTGARQSQ--FLLWKVNRQILWKHVLDEM 448
+ + + + KD ++L + G++ ++++ RQ LW + + VL +
Sbjct: 494 LQEISLLPFKDLRQVLASMQAGGFVDLQEVPRDAQRQPSRTIYLWYYDPDRICNSVLQDT 553
Query: 449 FHAALNLSLRVSYELDREKELL 470
+ A R+ +E R K+ L
Sbjct: 554 YKAMSRCLQRLRFERSRIKDFL 575
Score = 39.7 bits (91), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 57/115 (49%), Gaps = 14/115 (12%)
Query: 1 MLTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQ 60
M +++ + ++ +FG+L ++ L R L +K Y+EL + Q+ AL +IQ
Sbjct: 1 MTSQFAAELCELLVEENFGELFGRIFATLSRYDRLNLPRLKAYSELPNRQLLPALAAMIQ 60
Query: 61 QNCVQAFTTEQPDGFADGP---KANTQ---YVVLFDNILHRV--RFAKF-LTILS 106
Q+ V +T+ + DG +AN Q Y+V IL V R K+ T+LS
Sbjct: 61 QHLVYHYTS-----YDDGVTYYEANMQSAYYLVRSGKILEFVEERLGKYAATVLS 110
>gi|70984834|ref|XP_747923.1| DNA directed RNA polymerase III subunit Rpc82 [Aspergillus
fumigatus Af293]
gi|74668051|sp|Q4WEU2.1|RPC3_ASPFU RecName: Full=DNA-directed RNA polymerase III subunit rpc3;
Short=RNA polymerase III subunit C3
gi|66845551|gb|EAL85885.1| DNA directed RNA polymerase III subunit Rpc82, putative
[Aspergillus fumigatus Af293]
Length = 629
Score = 40.4 bits (93), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 68/142 (47%), Gaps = 5/142 (3%)
Query: 333 NMTLDHVRASLVQ--LDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDK 390
N+T + + L+ ++F + ++ E+E ++ RYG A R+ R+L G+L E +
Sbjct: 438 NLTSKRMVSGLITWTVEFRHLARKLRHLELERMIEARYGDVALRVVRVLHAKGKLDEK-R 496
Query: 391 ISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTGARQSQ--FLLWKVNRQILWKHVLDEM 448
+ + + + KD ++L + G++ ++++ RQ LW + + VL +
Sbjct: 497 LQEISLLPFKDLRQVLASMQAGGFVDLQEVPRDAQRQPSRTIYLWYYDPDRICNSVLQDT 556
Query: 449 FHAALNLSLRVSYELDREKELL 470
+ A R+ +E R K+ L
Sbjct: 557 YKAMSRCLQRLRFERSRIKDFL 578
Score = 39.7 bits (91), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 57/115 (49%), Gaps = 14/115 (12%)
Query: 1 MLTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQ 60
M +++ + ++ +FG+L ++ L R L +K Y+EL + Q+ AL +IQ
Sbjct: 1 MTSQFAAELCELLVEENFGELFGRIFATLSRYDRLNLPRLKAYSELPNRQLLPALAAMIQ 60
Query: 61 QNCVQAFTTEQPDGFADGP---KANTQ---YVVLFDNILHRV--RFAKF-LTILS 106
Q+ V +T+ + DG +AN Q Y+V IL V R K+ T+LS
Sbjct: 61 QHLVYHYTS-----YDDGVTYYEANMQSAYYLVRSGKILEFVEERLGKYAATVLS 110
>gi|380474589|emb|CCF45694.1| RNA polymerase III subunit Rpc82 [Colletotrichum higginsianum]
Length = 417
Score = 40.4 bits (93), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 33/178 (18%), Positives = 82/178 (46%), Gaps = 12/178 (6%)
Query: 346 LDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKI 405
+DF+ +I+ + EV++V+ + +GR R+ R+L + G+L E + ++K +
Sbjct: 241 VDFKPLIDGFKQTEVDAVIEQSFGRHGLRLTRILREKGKLDEK-MLPSLALMKKGEVQGK 299
Query: 406 LYKLWKDGYLLMEKLVVTGARQS--QFLLWKVNRQILWKHVLDEMFHAALNLSLRVSYEL 463
+ + G++ ++++ +R + W + + ++D+ + L +
Sbjct: 300 MLAMQMAGFVDVQEVPRDASRTATRTMFFWFFDIERTEAQLVDDFYKTMLRCLQNLEVHR 359
Query: 464 DREKELLNL---------PADKRTGPLQDRYNRIRKVRILLESSQMKLDDAILLFHDF 512
RE+ +L+ + T ++Y+R +++ L M+LDD + +F D+
Sbjct: 360 YRERNILSFVERNDVKGKEEEVMTAEHYNKYSRYLELQSKLLGHVMRLDDLVAVFRDY 417
>gi|146075658|ref|XP_001462755.1| conserved hypothetical protein [Leishmania infantum JPCM5]
gi|134066834|emb|CAM65296.1| conserved hypothetical protein [Leishmania infantum JPCM5]
Length = 192
Score = 40.4 bits (93), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 31/136 (22%), Positives = 63/136 (46%), Gaps = 10/136 (7%)
Query: 338 HVRASLVQLDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFV 397
H +++ +D + + Q E VV RYG RI +LL + LE +++ +
Sbjct: 60 HSQSNFYAIDHVTAVHLLQEAVCERVVYSRYGVLGVRIMKLLLQH-HFLEERTLAEQSIA 118
Query: 398 EKKDAPKILYKLWKDGYLLMEKLVVTGA-----RQSQFLLWKVNRQILWKHVLDEMFHAA 452
++L++++KDG+LL +++ T A ++ LW ++ W L +
Sbjct: 119 TYVKVREVLHQMFKDGFLLQQEVPRTSALVERSAKASVYLWGLS----WSATLLPVVRER 174
Query: 453 LNLSLRVSYELDREKE 468
L +L +++ RE +
Sbjct: 175 LAKTLTIAWAKLREAQ 190
>gi|398009521|ref|XP_003857960.1| hypothetical protein, conserved [Leishmania donovani]
gi|322496163|emb|CBZ31235.1| hypothetical protein, conserved [Leishmania donovani]
Length = 192
Score = 40.4 bits (93), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 31/136 (22%), Positives = 63/136 (46%), Gaps = 10/136 (7%)
Query: 338 HVRASLVQLDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFV 397
H +++ +D + + Q E VV RYG RI +LL + LE +++ +
Sbjct: 60 HSQSNFYAIDHVTAVHLLQEAVCERVVYSRYGVLGVRIMKLLLQH-HFLEERTLAEQSIA 118
Query: 398 EKKDAPKILYKLWKDGYLLMEKLVVTGA-----RQSQFLLWKVNRQILWKHVLDEMFHAA 452
++L++++KDG+LL +++ T A ++ LW ++ W L +
Sbjct: 119 TYVKVREVLHQMFKDGFLLQQEVPRTSALVERSAKASVYLWGLS----WSATLLPVVRER 174
Query: 453 LNLSLRVSYELDREKE 468
L +L +++ RE +
Sbjct: 175 LAKTLTIAWAKLREAQ 190
>gi|255722193|ref|XP_002546031.1| hypothetical protein CTRG_00812 [Candida tropicalis MYA-3404]
gi|240136520|gb|EER36073.1| hypothetical protein CTRG_00812 [Candida tropicalis MYA-3404]
Length = 584
Score = 40.4 bits (93), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 28/136 (20%), Positives = 62/136 (45%), Gaps = 14/136 (10%)
Query: 17 HFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQPDGFA 76
H G++ + + L+ G LT + + TE+ + VK AL+ LIQ NC+ + + +
Sbjct: 26 HLGEIASCIISRLISNGRLTAKEISTRTEIPIKNVKTALVSLIQLNCIYFWEEKDKKVYY 85
Query: 77 DGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTLKQMF---- 132
+ + +I++ ++ +E+ + E+VQ +L +G + +
Sbjct: 86 SLKETGLLLFLYSGDIINHIK---------KEYGEDEAEIVQNILTYGHVKVNDYLSQFK 136
Query: 133 -DRAKSSEKEGNLVDL 147
D++K ++E + L
Sbjct: 137 DDKSKQIDEENRFLRL 152
>gi|149246041|ref|XP_001527490.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
YB-4239]
gi|206558157|sp|A5DRM4.1|RPC3_LODEL RecName: Full=DNA-directed RNA polymerase III subunit RPC3;
Short=RNA polymerase III subunit C3
gi|146447444|gb|EDK41832.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
YB-4239]
Length = 610
Score = 40.4 bits (93), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 55/113 (48%), Gaps = 9/113 (7%)
Query: 17 HFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQ-PDGF 75
H G++ + + LL G L + + T+L+ + +K+A++ LIQ NC+ + ++ P F
Sbjct: 26 HLGEVASVIITTLLASGRLNIKQISVKTKLAIKSIKSAIVSLIQLNCLYYWQDDKNPTIF 85
Query: 76 ADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTL 128
Y V + V L ++QE+ + E++Q ++ +G L L
Sbjct: 86 --------YYSVNETGLKTLVYSGDILNHITQEYGDEEAEIIQNIIMNGHLKL 130
>gi|298707346|emb|CBJ29990.1| hypothetical protein Esi_0170_0035 [Ectocarpus siliculosus]
Length = 301
Score = 40.0 bits (92), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 62/140 (44%), Gaps = 24/140 (17%)
Query: 13 VITNHFGDLVAKVCECLLRK-----GPLTR-----QNV-------KRYTELSDEQVKNAL 55
VI + G +V+ V E L+R LTR Q + K T+++ VK +L
Sbjct: 25 VIEEYHGPIVSTVAEVLMRADRTTLAELTRLVLRDQGIMGVSRAGKTITKVTAANVKESL 84
Query: 56 LVLIQQNCV-QAFTTE----QPDGFADGPKANTQ--YVVLFDNILHRVRFAKFLTILSQE 108
L++ Q N V A TE + + G N + Y +L +L R R +F + ++
Sbjct: 85 LIMTQHNMVAAAMPTEKEMRKARASSSGRSGNIRLHYTLLPLEVLVRTRGPQFHSHAART 144
Query: 109 FDQQCVELVQGLLEHGRLTL 128
F + +V L HGR TL
Sbjct: 145 FSKVAGLVVDCFLRHGRRTL 164
>gi|343429865|emb|CBQ73437.1| conserved hypothetical protein [Sporisorium reilianum SRZ2]
Length = 707
Score = 40.0 bits (92), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 63/132 (47%), Gaps = 3/132 (2%)
Query: 341 ASLVQLDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKK 400
AS + +++ + E + + + +VV +++G A RI +L + G+ LE IS V
Sbjct: 517 ASSLTIEYSNVAERMRRDLLRNVVEEKFGTAAIRIMNILREKGK-LEEKHISKLALVSIS 575
Query: 401 DAPKILYKLWKDGYLLMEKLVVTGARQS--QFLLWKVNRQILWKHVLDEMFHAALNLSLR 458
+ + +L+ L ++++ T R F LW V+ +LD ++ + L R
Sbjct: 576 ETRDLCSRLFHASLLGLQEVPKTKDRDPAKTFFLWFVDEAKCRAWLLDHLYQSLARLGQR 635
Query: 459 VSYELDREKELL 470
+ E+ ++ LL
Sbjct: 636 RNEEMRKQMPLL 647
>gi|115432954|ref|XP_001216614.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
gi|121735401|sp|Q0CE91.1|RPC3_ASPTN RecName: Full=DNA-directed RNA polymerase III subunit rpc3;
Short=RNA polymerase III subunit C3
gi|114189466|gb|EAU31166.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
Length = 650
Score = 39.7 bits (91), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 39/68 (57%)
Query: 2 LTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQ 61
+++Y + ++ ++FG+L + L+R LT ++ Y++L D Q++ L ++QQ
Sbjct: 1 MSQYIAELCTLLVEDNFGELFGHIFATLIRYDRLTLPRLRLYSKLPDAQLRRGLAAMVQQ 60
Query: 62 NCVQAFTT 69
+ V +T+
Sbjct: 61 HLVYHYTS 68
>gi|452845393|gb|EME47326.1| hypothetical protein DOTSEDRAFT_69302 [Dothistroma septosporum
NZE10]
Length = 648
Score = 39.7 bits (91), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 44/85 (51%), Gaps = 7/85 (8%)
Query: 359 EVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLME 418
+++S VS RYG+ A RI RLL + GR LE +++ + KD +L L G++ +
Sbjct: 481 DIDSTVSARYGKVAVRIVRLLRERGR-LEEKQVAAFVMMRIKDVRAVLTILQYAGFVESQ 539
Query: 419 KLVVTGARQSQFLLWKVNRQILWKH 443
++ +RQ ++ LW H
Sbjct: 540 EIPKDASRQPSRAVY------LWFH 558
>gi|58267762|ref|XP_571037.1| hypothetical protein CNE05090 [Cryptococcus neoformans var.
neoformans JEC21]
gi|57227271|gb|AAW43730.1| hypothetical protein CNE05090 [Cryptococcus neoformans var.
neoformans JEC21]
Length = 455
Score = 39.3 bits (90), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 48/230 (20%), Positives = 104/230 (45%), Gaps = 22/230 (9%)
Query: 259 SVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQATSS---AEKKVKTKNSVP 315
+V RA + LR + R H G +++S + +++ A + +K+S+P
Sbjct: 166 GIVMRAVLDA---SLRDTSLLKDDRTHDPVGINSIISLIPPSSAPILLAGLGLSSKSSIP 222
Query: 316 ------LSLSSIYEEVIKSEAGRNMTLDHVRASLVQLDFEKIIEIAQNEEVESVVSKRYG 369
LS+ + +++ + AG + + +++FE I + + +V ++ G
Sbjct: 223 DLVRTYLSILAGEDQLTGTGAGVFLQREGSTNPGYKVEFEAICVKMREAMLSDLVREKLG 282
Query: 370 RDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTGARQ-- 427
A R+ ++++S + ET I D + KDA IL +L K + +++ T A+
Sbjct: 283 DKAARVLAVVTRSSKAFET-TIRDCAMLPLKDARYILAELQKLSLVETQEVPKTAAKSRA 341
Query: 428 -------SQFLLWKVNRQILWKHVLDEMFHAALNLSLRVSYELDREKELL 470
+++ LW V+ + +L ++ N+ R E+D++K +L
Sbjct: 342 NMPSSSSAEYHLWAVDLSRCYSVLLSSVYKTMGNILQRRRAEMDKKKVVL 391
>gi|444316394|ref|XP_004178854.1| hypothetical protein TBLA_0B05000 [Tetrapisispora blattae CBS 6284]
gi|387511894|emb|CCH59335.1| hypothetical protein TBLA_0B05000 [Tetrapisispora blattae CBS 6284]
Length = 650
Score = 39.3 bits (90), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 68/156 (43%), Gaps = 11/156 (7%)
Query: 13 VITNHFGDLVAKVCECLLRKGPLT-RQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQ 71
++ H G+ V E L+ KG LT R+ R + + +K+ L+ LIQ CV+ T
Sbjct: 45 LVNTHIGERAKLVIELLIDKGRLTVREIYDRLNQFRPKVIKSILVSLIQLRCVRYHTERD 104
Query: 72 PDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQ-CVELVQGLLEHGRLTLKQ 130
G K+NT Y + L + L + +F+ ++VQ +L G LT
Sbjct: 105 FKG-----KSNTYYYFNEEGPLLWLYSGLILEEIDLQFNSTIATQIVQNILSLGSLTPN- 158
Query: 131 MFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERC 166
D + + N+ L LVKLV + ++ R
Sbjct: 159 --DLQSITTNQKNITK-SKLSTVLVKLVESGFLVRV 191
>gi|374107793|gb|AEY96700.1| FAEL282Wp [Ashbya gossypii FDAG1]
Length = 636
Score = 39.3 bits (90), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 69/172 (40%), Gaps = 19/172 (11%)
Query: 13 VITNHFGDLVAKVCECLLRKGPLT-RQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQ 71
V +H G+ +V E LL KG L+ + V EL + V+ L+ LIQ CVQ
Sbjct: 40 VARSHLGERAGRVIELLLNKGRLSVSELVHLAPELGSKSVRTVLVSLIQLRCVQYLEETT 99
Query: 72 PDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFD-----QQCVELVQGLLEHGRL 126
G + T Y D + + + +F+ + ++VQ +L G L
Sbjct: 100 VSG-----RKITYYYFNEDGFQLMLYAGDIVAAVESQFEADDAKEIAAQIVQNVLALGSL 154
Query: 127 TLKQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISE 178
T K S V ++ + VKLV ++ P S MP+++
Sbjct: 155 TTKDYMQSLASD------VSVNDVASMFVKLVELGFL--VPLSNVHYMPLAD 198
>gi|45190324|ref|NP_984578.1| AEL282Wp [Ashbya gossypii ATCC 10895]
gi|74693899|sp|Q758N7.1|RPC3_ASHGO RecName: Full=DNA-directed RNA polymerase III subunit RPC3;
Short=RNA polymerase III subunit C3
gi|44983220|gb|AAS52402.1| AEL282Wp [Ashbya gossypii ATCC 10895]
Length = 636
Score = 39.3 bits (90), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 69/172 (40%), Gaps = 19/172 (11%)
Query: 13 VITNHFGDLVAKVCECLLRKGPLT-RQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQ 71
V +H G+ +V E LL KG L+ + V EL + V+ L+ LIQ CVQ
Sbjct: 40 VARSHLGERAGRVIELLLNKGRLSVSELVHLAPELGSKSVRTVLVSLIQLRCVQYLEETT 99
Query: 72 PDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFD-----QQCVELVQGLLEHGRL 126
G + T Y D + + + +F+ + ++VQ +L G L
Sbjct: 100 VSG-----RKITYYYFNEDGFQLMLYAGDIVAAVESQFEADDAKEIAAQIVQNVLALGSL 154
Query: 127 TLKQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISE 178
T K S V ++ + VKLV ++ P S MP+++
Sbjct: 155 TTKDYMQSLASD------VSVNDVASMFVKLVELGFL--VPLSNVHYMPLAD 198
>gi|50303501|ref|XP_451692.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|74607505|sp|Q6CWJ7.1|RPC3_KLULA RecName: Full=DNA-directed RNA polymerase III subunit RPC3;
Short=RNA polymerase III subunit C3
gi|49640824|emb|CAH02085.1| KLLA0B03542p [Kluyveromyces lactis]
Length = 657
Score = 39.3 bits (90), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 37/158 (23%), Positives = 68/158 (43%), Gaps = 20/158 (12%)
Query: 16 NHFGDLVAKVCECLLRKGPLTRQNVKRYT-ELSDEQVKNALLVLIQQNCVQAFTTEQPDG 74
+H G+ + V L+ KG L+ + + + ELS +K L+ LIQ CVQ G
Sbjct: 59 SHLGERASTVLSVLVNKGRLSTREIHSFIPELSLSSIKTVLVSLIQLRCVQYLEETSLSG 118
Query: 75 FADGPKANTQYVVLFDNILHRVRFA-----KFLTILSQEFDQQCVELVQGLLEH----GR 125
T Y + L + +A + + +Q+ +Q V + Q ++ + G
Sbjct: 119 ------RKTLYYYFNEEGLFLMLYAGDISDRIVQYFNQDEEQHLVNIAQQIIHNVLALGS 172
Query: 126 LTLKQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYV 163
LT+K +SE N D+ ++ + V+L ++
Sbjct: 173 LTVKDYL----ASESNSNDTDIFNIHQAFVRLADLEFL 206
>gi|169597803|ref|XP_001792325.1| hypothetical protein SNOG_01692 [Phaeosphaeria nodorum SN15]
gi|160707592|gb|EAT91341.2| hypothetical protein SNOG_01692 [Phaeosphaeria nodorum SN15]
Length = 1009
Score = 38.9 bits (89), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 68/139 (48%), Gaps = 7/139 (5%)
Query: 338 HVRA--SLVQLDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTT 395
H RA S Q++FE+I + EVE+ +S R G ++ R L K G+L E +
Sbjct: 471 HSRAGFSQWQIEFEEIAKQLIQAEVENTISARKGALGVKLIRALRKKGKLDER-ATCNAM 529
Query: 396 FVEKKDAPKILYKLWKDGYLLME---KLVVTGARQSQFLLWKVNRQILWKHVLDEMFHAA 452
+ D I+ L G++ + K+ A+ S L+W +RQ + +L + +
Sbjct: 530 MMSANDIRGIVNDLTVQGFVQTQEIPKVERREAKHSLHLVW-YDRQRAREKLLHDTYKGM 588
Query: 453 LNLSLRVSYELDREKELLN 471
+ + R+++E ++ + LL+
Sbjct: 589 VRILQRIAFEREKVQPLLS 607
>gi|307202972|gb|EFN82188.1| DNA-directed RNA polymerase III subunit RPC3 [Harpegnathos
saltator]
Length = 260
Score = 38.5 bits (88), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 23/115 (20%), Positives = 60/115 (52%), Gaps = 4/115 (3%)
Query: 360 VESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLL--- 416
++++V++++G A RIFRL+ ++ +E +++ + + A + Y L ++GY+
Sbjct: 79 LDNIVTEKFGSKAARIFRLI-RNKTTIELEQLQQVAMMPTRQAKLLTYTLAQEGYIQVQE 137
Query: 417 MEKLVVTGARQSQFLLWKVNRQILWKHVLDEMFHAALNLSLRVSYELDREKELLN 471
M++ V+ F ++ ++ + + + +HA N+ R +E K +++
Sbjct: 138 MKRSGVSAGPMKTFFMFYIDLNQVVQMQIGHCYHALHNIIQRRDHESTSNKRMID 192
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.318 0.134 0.374
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,315,912,829
Number of Sequences: 23463169
Number of extensions: 287819646
Number of successful extensions: 884515
Number of sequences better than 100.0: 394
Number of HSP's better than 100.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 236
Number of HSP's that attempted gapping in prelim test: 883200
Number of HSP's gapped (non-prelim): 782
length of query: 512
length of database: 8,064,228,071
effective HSP length: 147
effective length of query: 365
effective length of database: 8,910,109,524
effective search space: 3252189976260
effective search space used: 3252189976260
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 79 (35.0 bits)