BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010353
(512 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2XUB|A Chain A, Human Rpc62 Subunit Structure
pdb|2XV4|S Chain S, Structure Of Human Rpc62 (Partial)
Length = 534
Score = 99.8 bits (247), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 109/498 (21%), Positives = 215/498 (43%), Gaps = 66/498 (13%)
Query: 2 LTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQ 61
+T+ K ++ HFG++V K+ L+R G + + T S +QVK AL VL+Q
Sbjct: 1 MTQAEIKLCSLLLQEHFGEIVEKIGVHLIRTGSQPLRVIAHDTGTSLDQVKKALCVLVQH 60
Query: 62 NCVQAFTTEQPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLL 121
N V + + +Y +L +R+ +++ + +V+ LL
Sbjct: 61 NLV---------SYQVHKRGVVEYEAQCSRVLRMLRYPRYIYTTKTLYSDTGELIVEELL 111
Query: 122 EHGRLTL----KQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPIS 177
+G+LT+ K++ DR + ++G +D + T V+L H+V+RCP+ +P +
Sbjct: 112 LNGKLTMSAVVKKVADRLTETMEDGKTMDYAEVSNTFVRLADTHFVQRCPS-----VPTT 166
Query: 178 EEEGPARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVT 237
E P + + I E + +P + S++ G++ ++S+
Sbjct: 167 ENSDPGPPPPAPTL-VINEKDMY-------LVP----KLSLIGK-----GKRRRSSDEDA 209
Query: 238 PGE-KRKHDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSA 296
GE K K D + + ++AN + F + R + + V +D ++ ++
Sbjct: 210 AGEPKAKRPKYTTDNKEPIPDDGIYWQANLDRFHQHFRDQAIVSAVANRMDQTSSEIVRT 269
Query: 297 MLQATSSAEKKVKTKNSVPLSLSSIYEEVIKS-EAGRNMT---------------LDHVR 340
ML+ + ++ T +S P + E+ +S G N++ L+ V
Sbjct: 270 MLRMS-----EITTSSSAPFTQPLSSNEIFRSLPVGYNISKQVLDQYLTLLADDPLEFVG 324
Query: 341 AS------LVQLDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDT 394
S + ++ K + +ESVV +R+G RIFRL+ + + +E ++ D
Sbjct: 325 KSGDSGGGMYVINLHKALASLATATLESVVQERFGSRCARIFRLVLQK-KHIEQKQVEDF 383
Query: 395 TFVEKKDAPKILYKLWKDGYLLMEKLVVTG--ARQSQFLLWKVNRQILWKHVLDEMFHAA 452
+ K+A +LYK+ + ++ ++++ T A F L+ VN + +L + +
Sbjct: 384 AMIPAKEAKDMLYKMLSENFMSLQEIPKTPDHAPSRTFYLYTVNILSAARMLLHRCYKSI 443
Query: 453 LNLSLRVSYELDREKELL 470
NL R +E K LL
Sbjct: 444 ANLIERRQFETKENKRLL 461
>pdb|2NWL|A Chain A, Crystal Structure Of Gltph In Complex With L-Asp
pdb|2NWL|B Chain B, Crystal Structure Of Gltph In Complex With L-Asp
pdb|2NWL|C Chain C, Crystal Structure Of Gltph In Complex With L-Asp
Length = 422
Score = 29.3 bits (64), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 1 MLTEYGTKHAVHVITNHFGDLVAKVCECLL 30
+L YG HAVH FGDL ++ + L+
Sbjct: 29 ILGHYGYAHAVHTYVKPFGDLFVRLLKMLV 58
>pdb|1XFH|A Chain A, Structure Of Glutamate Transporter Homolog From
Pyrococcus Horikoshii
pdb|1XFH|B Chain B, Structure Of Glutamate Transporter Homolog From
Pyrococcus Horikoshii
pdb|1XFH|C Chain C, Structure Of Glutamate Transporter Homolog From
Pyrococcus Horikoshii
pdb|2NWW|A Chain A, Crystal Structure Of Gltph In Complex With Tboa
pdb|2NWW|B Chain B, Crystal Structure Of Gltph In Complex With Tboa
pdb|2NWW|C Chain C, Crystal Structure Of Gltph In Complex With Tboa
pdb|2NWX|A Chain A, Crystal Structure Of Gltph In Complex With L-Aspartate
And Sodium Ions
pdb|2NWX|B Chain B, Crystal Structure Of Gltph In Complex With L-Aspartate
And Sodium Ions
pdb|2NWX|C Chain C, Crystal Structure Of Gltph In Complex With L-Aspartate
And Sodium Ions
Length = 422
Score = 29.3 bits (64), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 1 MLTEYGTKHAVHVITNHFGDLVAKVCECLL 30
+L YG HAVH FGDL ++ + L+
Sbjct: 29 ILGHYGYAHAVHTYVKPFGDLFVRLLKMLV 58
>pdb|3V8G|A Chain A, Crystal Structure Of An Asymmetric Trimer Of A Glutamate
Transporter Homologue (Gltph)
pdb|3V8G|B Chain B, Crystal Structure Of An Asymmetric Trimer Of A Glutamate
Transporter Homologue (Gltph)
pdb|3V8G|C Chain C, Crystal Structure Of An Asymmetric Trimer Of A Glutamate
Transporter Homologue (Gltph)
pdb|3V8G|D Chain D, Crystal Structure Of An Asymmetric Trimer Of A Glutamate
Transporter Homologue (Gltph)
pdb|3V8G|E Chain E, Crystal Structure Of An Asymmetric Trimer Of A Glutamate
Transporter Homologue (Gltph)
pdb|3V8G|F Chain F, Crystal Structure Of An Asymmetric Trimer Of A Glutamate
Transporter Homologue (Gltph)
Length = 422
Score = 29.3 bits (64), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 1 MLTEYGTKHAVHVITNHFGDLVAKVCECLL 30
+L YG HAVH FGDL ++ + L+
Sbjct: 29 ILGHYGYAHAVHTYVKPFGDLFVRLLKMLV 58
>pdb|3V8F|A Chain A, Crystal Structure Of Crosslinked Gltph V216c-M385c
Mutant
pdb|3V8F|B Chain B, Crystal Structure Of Crosslinked Gltph V216c-M385c
Mutant
pdb|3V8F|C Chain C, Crystal Structure Of Crosslinked Gltph V216c-M385c
Mutant
Length = 422
Score = 29.3 bits (64), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 1 MLTEYGTKHAVHVITNHFGDLVAKVCECLL 30
+L YG HAVH FGDL ++ + L+
Sbjct: 29 ILGHYGYAHAVHTYVKPFGDLFVRLLKMLV 58
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.374
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,823,860
Number of Sequences: 62578
Number of extensions: 538219
Number of successful extensions: 1379
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1367
Number of HSP's gapped (non-prelim): 18
length of query: 512
length of database: 14,973,337
effective HSP length: 103
effective length of query: 409
effective length of database: 8,527,803
effective search space: 3487871427
effective search space used: 3487871427
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)