BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010353
(512 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q7ZUX1|RPC3_DANRE DNA-directed RNA polymerase III subunit RPC3 OS=Danio rerio
GN=polr3c PE=2 SV=1
Length = 539
Score = 116 bits (290), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 116/482 (24%), Positives = 212/482 (43%), Gaps = 51/482 (10%)
Query: 13 VITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQP 72
++ HFGD+V V L+R G LT + + T+L+ + VK +L VL+Q T P
Sbjct: 12 LLQEHFGDVVENVGTHLIRNGVLTLRALAHETKLALDLVKKSLCVLVQ----HGMCTFGP 67
Query: 73 DGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTL---- 128
GP +Y + ++ILH +R+ +++ + +V+ +L+ G++T+
Sbjct: 68 G--RRGPAGPVEYHINCEHILHMLRYPRYIYTAKSLYGDTGELIVEEILQRGQMTMSSTV 125
Query: 129 KQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEGPARKKGS 188
K + DR + EG +D + + +LV H+++RCP M +E G +
Sbjct: 126 KTVADRLTHNMPEGQSMDYNEVVSAFSRLVETHFLQRCPP-----MASAESSGTG---SA 177
Query: 189 KSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGEKRKHDVLE 248
++ + +P E LP ++ S+ GE ++ + +K K D
Sbjct: 178 ETPPAVTQPSNPESHPDCYKLPYISLSGHGKRRRSSEDGEADQRA-----AKKAKTDS-- 230
Query: 249 LDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAML---QATSSAE 305
ECG ++ + ++ NFE F R + I V LD + ++ ML + T+SA
Sbjct: 231 -SECG---DEGIHWQVNFERFHLHFRDQAIISAVSCKLDQTSGEIVRTMLRMSEVTTSAN 286
Query: 306 ---KKVKTKNSVPLSLSSIYEEVIKSEAGRNMTL------------DHVRASLVQLDFEK 350
+ + N + +L S Y + + + +TL + ++ +
Sbjct: 287 AAFTQALSANEIFRALPSNY-NIARPILDQYLTLLVDDPMEFVGKAGDSGGGMFVVNLHR 345
Query: 351 IIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLW 410
+ +ESVV +R+G + RIFRLL + R LE ++ D + K+A ++LY L
Sbjct: 346 ALANLARATLESVVQERFGSRSARIFRLLLRK-RHLEQKQVEDFAMIPAKEAKEMLYTLL 404
Query: 411 KDGYLLMEKLVVTG--ARQSQFLLWKVNRQILWKHVLDEMFHAALNLSLRVSYELDREKE 468
+ + ++++ T A F L+ VN+ + +L + NL R YE K
Sbjct: 405 SENLVQLQEIPKTPDHAPSRTFYLYAVNQLPTARLLLQHCYKTVGNLIERRLYETKENKR 464
Query: 469 LL 470
LL
Sbjct: 465 LL 466
>sp|Q2TBL4|RPC3_BOVIN DNA-directed RNA polymerase III subunit RPC3 OS=Bos taurus
GN=POLR3C PE=2 SV=1
Length = 533
Score = 107 bits (268), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 112/498 (22%), Positives = 212/498 (42%), Gaps = 66/498 (13%)
Query: 2 LTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQ 61
+T+ K ++ HFG++V K+ L+R G + + T S +QVK AL VLIQ
Sbjct: 1 MTQAEIKLCSLLLQEHFGEIVEKIGVHLIRTGSQPLRVIAHDTGTSLDQVKKALCVLIQH 60
Query: 62 NCVQAFTTEQPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLL 121
N V + + +Y + +L +R+ +++ + +V+ LL
Sbjct: 61 NLVT---------YQVHKRGVVEYEAQCNRVLRMLRYPRYIYTAKTLYSDTGELIVEELL 111
Query: 122 EHGRLTL----KQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPIS 177
+G++T+ K++ DR + ++G +D + T V+LV H+V+RCP L+P +
Sbjct: 112 LNGKMTMSAVVKKVADRLTETMEDGKTMDYAEVSNTFVRLVDTHFVQRCP-----LVPAT 166
Query: 178 EEEGPARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVT 237
E G P VV + S++ G++ ++S+
Sbjct: 167 EN------------SDTGPPPPAPTLVVSEKDMYLVPKLSLIGK-----GKRRRSSDEDA 209
Query: 238 PGE-KRKHDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSA 296
GE K K D + + ++AN + F + R + + V +D ++ ++
Sbjct: 210 TGEPKAKRPKQTTDNKEPIPDDGIYWQANLDRFHQHFRDQAIVSAVANRMDQTSSEIVRT 269
Query: 297 MLQATSSAEKKVKTKNSVPLSLSSIYEEVIKS-EAGRNMT---------------LDHVR 340
ML+ + +V T + P + E+ +S G N++ L+ V
Sbjct: 270 MLRMS-----EVTTPSGAPFTQPLSSNEIFRSLPVGYNISKQVLDQYLTLLADDPLEFVG 324
Query: 341 AS------LVQLDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDT 394
S + ++ K + +ESVV +R+G RIFRL+ + + LE ++ D
Sbjct: 325 KSGDSGGGMYVINLHKALGSLATATLESVVQERFGSRCARIFRLVLQK-KHLEQKQVEDF 383
Query: 395 TFVEKKDAPKILYKLWKDGYLLMEKLVVTG--ARQSQFLLWKVNRQILWKHVLDEMFHAA 452
+ K+A +LYK+ + ++ ++++ T A F L+ VN + +L + +
Sbjct: 384 AMIPAKEAKDMLYKMLSENFISLQEIPKTPDHAPSRTFYLYTVNILSAARMLLHRCYKSV 443
Query: 453 LNLSLRVSYELDREKELL 470
NL R +E K LL
Sbjct: 444 ANLIERRQFETKENKRLL 461
>sp|Q9D483|RPC3_MOUSE DNA-directed RNA polymerase III subunit RPC3 OS=Mus musculus
GN=Polr3c PE=2 SV=1
Length = 533
Score = 100 bits (250), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 102/486 (20%), Positives = 205/486 (42%), Gaps = 65/486 (13%)
Query: 13 VITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQP 72
++ HFG++V K+ L+R G + + T+ S +QVK AL VLI N V +
Sbjct: 12 LLQEHFGEIVEKIGVHLVRTGSQPLRVIAHDTKASLDQVKKALCVLIHHNLVLYHVHK-- 69
Query: 73 DGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTL---- 128
+ +Y +L +R+ +++ + +V+ LL +G++T+
Sbjct: 70 -------RGVVEYEAQCSRVLRMLRYPRYIYTTKTLYGDTGELIVEELLLNGKMTMSAVV 122
Query: 129 KQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEGPARKKGS 188
K++ DR + ++G +D + V+L H+V+RCP L+P ++
Sbjct: 123 KKVADRLTETMEDGKTMDYAEVSNAFVRLADTHFVQRCP-----LVPDTD---------- 167
Query: 189 KSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGEKRKHDVLE 248
+ G P V+ + S++ G++ ++S+ GE +
Sbjct: 168 --SSDRGPPPPAPTLVINEKDMYLVPKLSLIGK-----GKRRRSSDEDATGEPKAKKPRY 220
Query: 249 LDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQATSSAEKKV 308
D + + + ++ N + F + R + + V +D ++ ++ ML+ + ++
Sbjct: 221 TDNKEPSPDDGIYWQVNLDRFHQHFRDQAIVSAVANRMDQTSSEIVRTMLRMS-----EI 275
Query: 309 KTKNSVPLSLSSIYEEVIKS-EAGRNMT---LDHVRASLVQ------------------L 346
T +S P + E+ +S G N++ LD L +
Sbjct: 276 TTPSSAPYTQPLSSNEIFRSLPVGYNISKQVLDQYLTLLADDPLEFIGKSGDSGGGMFVI 335
Query: 347 DFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKIL 406
+ K + +ESV+ +R+G RIFRL+ + + LE ++ D + K+A +L
Sbjct: 336 NLHKALASLATATLESVIQERFGSRCARIFRLVLQK-KHLEQKQVEDFAMIPAKEAKDML 394
Query: 407 YKLWKDGYLLMEKLVVTG--ARQSQFLLWKVNRQILWKHVLDEMFHAALNLSLRVSYELD 464
YK+ + ++L++++ T A F L+ VN + +L + + NL R +E
Sbjct: 395 YKMLSENFILLQEIPKTPDHAPSRTFYLYTVNVLSAARMLLHRCYKSIANLIERRQFETK 454
Query: 465 REKELL 470
K LL
Sbjct: 455 ENKRLL 460
>sp|Q9BUI4|RPC3_HUMAN DNA-directed RNA polymerase III subunit RPC3 OS=Homo sapiens
GN=POLR3C PE=1 SV=1
Length = 534
Score = 99.8 bits (247), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 109/498 (21%), Positives = 215/498 (43%), Gaps = 66/498 (13%)
Query: 2 LTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQ 61
+T+ K ++ HFG++V K+ L+R G + + T S +QVK AL VL+Q
Sbjct: 1 MTQAEIKLCSLLLQEHFGEIVEKIGVHLIRTGSQPLRVIAHDTGTSLDQVKKALCVLVQH 60
Query: 62 NCVQAFTTEQPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLL 121
N V + + +Y +L +R+ +++ + +V+ LL
Sbjct: 61 NLV---------SYQVHKRGVVEYEAQCSRVLRMLRYPRYIYTTKTLYSDTGELIVEELL 111
Query: 122 EHGRLTL----KQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPIS 177
+G+LT+ K++ DR + ++G +D + T V+L H+V+RCP+ +P +
Sbjct: 112 LNGKLTMSAVVKKVADRLTETMEDGKTMDYAEVSNTFVRLADTHFVQRCPS-----VPTT 166
Query: 178 EEEGPARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVT 237
E P + + I E + +P + S++ G++ ++S+
Sbjct: 167 ENSDPGPPPPAPTL-VINEKDMY-------LVP----KLSLIGK-----GKRRRSSDEDA 209
Query: 238 PGE-KRKHDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSA 296
GE K K D + + ++AN + F + R + + V +D ++ ++
Sbjct: 210 AGEPKAKRPKYTTDNKEPIPDDGIYWQANLDRFHQHFRDQAIVSAVANRMDQTSSEIVRT 269
Query: 297 MLQATSSAEKKVKTKNSVPLSLSSIYEEVIKS-EAGRNMT---------------LDHVR 340
ML+ + ++ T +S P + E+ +S G N++ L+ V
Sbjct: 270 MLRMS-----EITTSSSAPFTQPLSSNEIFRSLPVGYNISKQVLDQYLTLLADDPLEFVG 324
Query: 341 AS------LVQLDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDT 394
S + ++ K + +ESVV +R+G RIFRL+ + + +E ++ D
Sbjct: 325 KSGDSGGGMYVINLHKALASLATATLESVVQERFGSRCARIFRLVLQK-KHIEQKQVEDF 383
Query: 395 TFVEKKDAPKILYKLWKDGYLLMEKLVVTG--ARQSQFLLWKVNRQILWKHVLDEMFHAA 452
+ K+A +LYK+ + ++ ++++ T A F L+ VN + +L + +
Sbjct: 384 AMIPAKEAKDMLYKMLSENFMSLQEIPKTPDHAPSRTFYLYTVNILSAARMLLHRCYKSI 443
Query: 453 LNLSLRVSYELDREKELL 470
NL R +E K LL
Sbjct: 444 ANLIERRQFETKENKRLL 461
>sp|Q5XIL3|RPC3_RAT DNA-directed RNA polymerase III subunit RPC3 OS=Rattus norvegicus
GN=Polr3c PE=2 SV=1
Length = 533
Score = 90.9 bits (224), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 102/497 (20%), Positives = 207/497 (41%), Gaps = 65/497 (13%)
Query: 2 LTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQ 61
+T+ K ++ HFG++V K+ L+R G + + T+ S +QVK AL VLI
Sbjct: 1 MTQAEIKLCSLLLQEHFGEIVEKIGVHLIRTGSQPLRVIAHDTKASLDQVKKALCVLIHH 60
Query: 62 NCVQAFTTEQPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLL 121
N V + + +Y +L +R+ +++ + +V+ LL
Sbjct: 61 NLVI---------YHVHKRGVVEYEAQCSRVLRMLRYPRYIYTTKTLYGDTGELIVEELL 111
Query: 122 EHGRLTL----KQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPIS 177
+G++T+ K++ DR + ++G +D + V+L H+V+RCP L+P +
Sbjct: 112 LNGKMTMSAVVKKVADRLTETMEDGKTMDYAEVSNAFVRLADTHFVQRCP-----LVPDT 166
Query: 178 EEEGPARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVT 237
+ S P + + +P + S++ G++ ++S+
Sbjct: 167 D--------SSDPGPPPPAPNLVINEKDMYLVP----KLSLIGK-----GKRRRSSDEDA 209
Query: 238 PGEKRKHDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAM 297
GE + D + + ++ N + F + R + + V +D ++ ++ M
Sbjct: 210 AGEPKAKKPRCTDNEEPTPDDGIYWQVNLDRFHQHFRDQAIVSAVANRMDQTSSEIVRTM 269
Query: 298 LQATSSAEKKVKTKNSVPLSLSSIYEEVIKS-EAGRNMT---LDHVRASLVQ-------- 345
L+ + ++ T + P + E+ +S G N++ LD L
Sbjct: 270 LRMS-----EITTPSGAPFTQPLSSNEIFRSLPVGYNISKQVLDQYLTLLADDPLEFIGK 324
Query: 346 ----------LDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTT 395
++ K + +ESV+ +R+G RIFRL+ + + LE ++ D
Sbjct: 325 AGDSGGGMYVINLHKALASLSTATLESVIQERFGSRCARIFRLVLQK-KHLEQKQVEDFA 383
Query: 396 FVEKKDAPKILYKLWKDGYLLMEKLVVTG--ARQSQFLLWKVNRQILWKHVLDEMFHAAL 453
+ K+A +LYK+ + ++ ++++ T A F L+ VN + +L + +
Sbjct: 384 MIPAKEAKDMLYKMLSENFISLQEIPKTPDHAPSRTFYLYTVNVLSAARMLLHRCYKSIA 443
Query: 454 NLSLRVSYELDREKELL 470
NL R +E K LL
Sbjct: 444 NLIERRQFETKENKRLL 460
>sp|Q55FJ5|RPC3_DICDI DNA-directed RNA polymerase III subunit rpc3 OS=Dictyostelium
discoideum GN=polr3c PE=3 SV=1
Length = 666
Score = 72.0 bits (175), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 54/205 (26%), Positives = 97/205 (47%), Gaps = 22/205 (10%)
Query: 5 YGTKHAVHVITNHFGDLVAKVCECLLRKGP----LTRQNVKRYTELSDEQVKNALLVLIQ 60
Y K A+ ++ FGD V KV E L+++G + Q++ L+ +++K LLVLIQ
Sbjct: 2 YEQKVAIDIVKESFGDDVTKVFEFLVQRGKSSYKIINQSLSGKGGLTIKRIKQCLLVLIQ 61
Query: 61 QNCVQ------AFTTEQPDGFADGPK--ANTQYVVLFDNILHRVRFAKFLTILSQEFDQQ 112
N V T ++ + G +++ Y + N +HR+RF KF+ + +
Sbjct: 62 HNLVTYEEFLLPLTKDEIEKLVPGEPLPSDSVYEAIIVNAIHRLRFPKFINYIKHSKGDE 121
Query: 113 CVELVQGLLEHGRLTLKQMFDRAKSSEKEGNLVDLDSL----RETLVKLVTAHYVERCPA 168
+++ L++HGRL + + +A ++ D D + +T KL+ ++ R P
Sbjct: 122 AAYILEELIDHGRLPMDLLIKQASQIQRVDTFEDQDDITKRFEDTFTKLIMDQFIMRAPR 181
Query: 169 SEPLLMPISEEEGPARKKGSKSAKK 193
P+S++E SK AKK
Sbjct: 182 PR----PVSDQE--TSNALSKEAKK 200
Score = 53.1 bits (126), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 54/258 (20%), Positives = 110/258 (42%), Gaps = 42/258 (16%)
Query: 249 LDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQATSSAEKKV 308
+D+ + DE V++ N+E FI + K C D V + + + +AM++ K+
Sbjct: 369 MDQQRIIDESRVLWTINYEQFIIEFKLKACYDFVTEKNNQQSGLLFNAMVKLC----KRS 424
Query: 309 KTKNSVPLSLSSIYEEVIKSEAGRNM----------------TLDHVRASLV-------- 344
N L+ S +Y E I E R++ + R S+V
Sbjct: 425 IRSNQDSLT-SCVYGENILEEYNRDLDSSKKMDKLQIEKYLSIMQASRPSMVTKMVSKSK 483
Query: 345 ----------QLDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDT 394
Q++ II I + + VES++ +++G + R+F+LL LLE +I++
Sbjct: 484 QSSSSELGAYQVNVGNIIGIIKQKMVESIIKQKFGDNGLRVFKLLLIKN-LLEPKQIAEL 542
Query: 395 TFVEKKDAPKILYKLWKDGYLLMEKLVVTGAR--QSQFLLWKVNRQILWKHVLDEMFHAA 452
+ + +L+ + + + ++++ + F L+ V+ + +++F A
Sbjct: 543 AMIPPNECKALLFNMMQKNIIRLQEIPRSSDHFANRTFYLFFVDLPTIIATFTEDIFKAI 602
Query: 453 LNLSLRVSYELDREKELL 470
N R+ EL+ K+ L
Sbjct: 603 YNTRERLKSELEPHKDAL 620
>sp|A3LQX9|RPC3_PICST DNA-directed RNA polymerase III subunit RPC3 OS=Scheffersomyces
stipitis (strain ATCC 58785 / CBS 6054 / NBRC 10063 /
NRRL Y-11545) GN=RPC82 PE=3 SV=1
Length = 599
Score = 51.6 bits (122), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 72/152 (47%), Gaps = 18/152 (11%)
Query: 16 NHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQPDGF 75
NH GD+ A + CL+ G LT ++ T++ ++VK+AL+ LIQ NC+ F
Sbjct: 26 NHLGDVAALIISCLISYGRLTATDISHRTKIPVKKVKSALVSLIQMNCI----------F 75
Query: 76 ADGPKANTQYVVLFD--NILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTLKQMFD 133
+ Q F+ IL + ++ ++ + + E+VQ +L +G + ++ +
Sbjct: 76 YWRESGSKQVFYSFNETGILVFLHSGDIISHVTTHYGEDSAEIVQNILVNGHIRIEDYVN 135
Query: 134 RAKSSEKEGNLVDLDSLRETLVKLVTAHYVER 165
EK+ +D+ +L +L T ++ R
Sbjct: 136 NIDDEEKK---LDIQTL---FFRLFTDRWIVR 161
>sp|Q9C106|RPC3_SCHPO DNA-directed RNA polymerase III subunit rpc3 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=rpc82 PE=1 SV=1
Length = 591
Score = 48.9 bits (115), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 61/321 (19%), Positives = 136/321 (42%), Gaps = 28/321 (8%)
Query: 2 LTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQ 61
+++Y + ++ FGD + V LLR G LT +++ T L +++ AL+ L+Q
Sbjct: 1 MSQYAVELCEILVEEFFGDCCSAVASALLRHGRLTIPMLQKRTSLPGPKIRQALVSLMQH 60
Query: 62 NCVQAFTTEQPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLL 121
+ V T + + T Y + I + +R K + ++SQ+ +Q+ +V+ L
Sbjct: 61 HMVLYVTV------IENVREVTYYETQWKEIYNILRKGKDVYLISQKLNQEAASVVKYLS 114
Query: 122 EHGRLTLKQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEG 181
GR + ++F+ A + +G+ + +++ L +L+ ++ L+P+ ++E
Sbjct: 115 TQGRARVLEVFN-AFDKKVDGSDEESRMMQKNLTELIYQKFL--LVVQPRHLIPVGDQEM 171
Query: 182 PARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGEK 241
R K K E + + V+ ++ +E + E ++ + P ++
Sbjct: 172 QLRIKHLDRRKSENVSEIKKNREVDDSVALEMLELRAADMSELQGLTRKPKESIPHPTKR 231
Query: 242 RKHDV-----LELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSA 296
RK V + D + D+ + + + +R ++ G +VLS
Sbjct: 232 RKRAVGSAPSVSTDLNNILDDDNSILVPDLSAHVR--------------INSGKLSVLSK 277
Query: 297 MLQATSSAEKKVKTKNSVPLS 317
+ T E+++ S+ S
Sbjct: 278 NARLTHWVERRIGKSTSLVYS 298
Score = 41.6 bits (96), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 35/179 (19%), Positives = 90/179 (50%), Gaps = 16/179 (8%)
Query: 346 LDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKI 405
++F + ++ + E E+ + +++G A R+ R++ G++ E ++++ + ++D +
Sbjct: 414 VNFTHLTDMLRAIEYENFIEQKFGERAIRLLRIIKDKGKI-EEKQLANIALLRQRDLRTV 472
Query: 406 LYKLWKDGYLLMEKLVVTGAR--QSQFLLWKVNRQILWKHVLDEMFHAALNLSLRV---- 459
L + + G L ++++ + R F LW + +LDE++H L +R+
Sbjct: 473 LQAMAEIGALELQEVPRSSDRAPSKTFFLWFHRPDRAYSLLLDELYHVIARLYMRLRDAR 532
Query: 460 --SYELDREKELLNLPADKRTGPLQDRYNRIRKV-----RILLESSQMKLDDAILLFHD 511
+L + E +++ ++ + ++K+ ++LL++S +LDD +L+F D
Sbjct: 533 AQRAQLIEKAERIDIKGNEEQYLQKFEQAELKKLYSYEEKLLLQAS--RLDDMVLVFRD 589
>sp|A2QUS7|RPC3_ASPNC DNA-directed RNA polymerase III subunit rpc3 OS=Aspergillus niger
(strain CBS 513.88 / FGSC A1513) GN=rpc82 PE=3 SV=1
Length = 627
Score = 46.2 bits (108), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 58/121 (47%), Gaps = 8/121 (6%)
Query: 1 MLTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQ 60
M ++Y + ++ ++FG+L A++ L R L+ +K Y+ LSD Q+++ L +IQ
Sbjct: 1 MTSQYAAELCALLVEDNFGELFARIFSTLQRYDRLSLPRLKFYSRLSDRQLRHGLSAMIQ 60
Query: 61 QNCVQAFTTEQPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGL 120
+ V +T+ + DG T Y + VR K L + + + L++ +
Sbjct: 61 HHLVYHYTS-----YDDG---VTYYEPNLQAAYYLVRSGKILEFIEERLGKYAATLMETI 112
Query: 121 L 121
+
Sbjct: 113 M 113
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/147 (23%), Positives = 72/147 (48%), Gaps = 5/147 (3%)
Query: 328 SEAGRNMTLDHVRASLVQ--LDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRL 385
S+ N+T V + L+ ++F + ++ E+E ++ RYG A R+ R+L G+L
Sbjct: 431 SQPPYNLTSKRVLSGLITWTVEFRHLARKLRHLELERMIEARYGDVALRVIRVLHAKGKL 490
Query: 386 LETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTGARQSQ--FLLWKVNRQILWKH 443
E ++ + + + KD ++L + G++ ++++ RQ LW + +
Sbjct: 491 DEK-RLQEISLLPFKDLRQVLASMQSGGFVDLQEVPRDAQRQPSRTIYLWYYDPDRIRSS 549
Query: 444 VLDEMFHAALNLSLRVSYELDREKELL 470
+L++ + A R+ +E +R KE L
Sbjct: 550 ILEDTYKAMSRCMQRLRFERNRLKEFL 576
>sp|Q5A246|RPC3_CANAL DNA-directed RNA polymerase III subunit RPC3 OS=Candida albicans
(strain SC5314 / ATCC MYA-2876) GN=RPC82 PE=3 SV=1
Length = 595
Score = 45.8 bits (107), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 34/153 (22%), Positives = 72/153 (47%), Gaps = 14/153 (9%)
Query: 15 TNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQPDG 74
T H G++ + + L+ G LT + + T++ + +K+AL+ LIQ NC+ + E+
Sbjct: 24 TTHLGEIASCIISILISNGRLTAREISNRTKIPTKNIKSALVSLIQLNCIYYWQEEKDRK 83
Query: 75 FADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTLKQMF-- 132
F K ++LF V + + +++ + E++Q +L HG + ++
Sbjct: 84 FYYSLKETG--LLLF------VYSGDIINHIKRQYGEDEAEIIQNILIHGHVKIEDYLTQ 135
Query: 133 ---DRAKSSEKEGNLVDLDSLRETLVKLVTAHY 162
D++ ++E + L + L+KL H+
Sbjct: 136 FNHDKSMKIDQENKFLKLFN-DNWLIKLQDYHF 167
>sp|A6R9K6|RPC3_AJECN DNA-directed RNA polymerase III subunit rpc3 OS=Ajellomyces
capsulata (strain NAm1 / WU24) GN=RPC82 PE=3 SV=1
Length = 649
Score = 45.1 bits (105), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/155 (26%), Positives = 73/155 (47%), Gaps = 28/155 (18%)
Query: 2 LTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQ 61
+++Y + +IT++FG+L A PL R + + T LS QV++ L VLIQQ
Sbjct: 1 MSQYAAELCKLLITDNFGELYA----------PLPR--IVQNTRLSPRQVRHGLAVLIQQ 48
Query: 62 NCVQAFTTEQPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLL 121
+ +T+ DG A Y + + VR + L ++ ++ + +++ +L
Sbjct: 49 RLIYHYTSLD-DGIA-------YYEASWMTAYNLVRSGRILQLVEEKLGKYVAKVLSTIL 100
Query: 122 EHGRL------TLKQMFDRAKSSEKEGNLVDLDSL 150
HG + TL ++ R + S K G LV + L
Sbjct: 101 YHGHVRISYLETLPEL--RPQVSSKAGKLVAANGL 133
Score = 36.2 bits (82), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 25/127 (19%), Positives = 63/127 (49%), Gaps = 3/127 (2%)
Query: 346 LDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKI 405
++F + ++ E+E ++ R+G A R+ R+L+ G+L E ++ + + + K+ ++
Sbjct: 473 VEFRHLARRLRHLEIERIIESRFGTIAVRVIRVLAAKGKLDE-KRLQEISLMASKELRQV 531
Query: 406 LYKLWKDGYLLMEKLVVTGARQSQ--FLLWKVNRQILWKHVLDEMFHAALNLSLRVSYEL 463
L ++ G++ ++++ RQ LW + + + VL++ + R+ E
Sbjct: 532 LARMEAAGFVDLQEVPRDAQRQPSRTMYLWFFDLDRVARMVLEDTYKCMSRCLQRIGVER 591
Query: 464 DREKELL 470
++ K L
Sbjct: 592 NKLKLFL 598
>sp|A1C4R7|RPC3_ASPCL DNA-directed RNA polymerase III subunit rpc3 OS=Aspergillus
clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC
3887 / NRRL 1) GN=rpc82 PE=3 SV=1
Length = 635
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/142 (23%), Positives = 69/142 (48%), Gaps = 5/142 (3%)
Query: 333 NMTLDHVRASLVQ--LDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDK 390
N+T + + L+ ++F + ++ E+E ++ RYG A R+ R+L G+L E +
Sbjct: 444 NLTSKRIVSGLITWTVEFRHLARKLRHLELERMIEARYGDVALRVVRVLHAKGKLDEK-R 502
Query: 391 ISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTGARQSQ--FLLWKVNRQILWKHVLDEM 448
+ + + + KD ++L + G++ ++++ RQ LW + + VL +
Sbjct: 503 LQEISLLPFKDLRQVLASMQAGGFVDLQEVPRDAQRQPSRTIYLWYYDPDRICNSVLQDT 562
Query: 449 FHAALNLSLRVSYELDREKELL 470
+ A R+ +E +R KE L
Sbjct: 563 YKAMSRCFQRLRFERNRLKEFL 584
>sp|Q1DTR6|RPC3_COCIM DNA-directed RNA polymerase III subunit RPC-3 OS=Coccidioides
immitis (strain RS) GN=RPC-82 PE=3 SV=1
Length = 653
Score = 42.7 bits (99), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 60/125 (48%), Gaps = 12/125 (9%)
Query: 2 LTEYGTKHAVHVITNHFGDLVAKVCECLLRKG--PLTRQNVKRYTELSDEQVKNALLVLI 59
+++Y + +IT++FG+L A + LL G PL R + + T LS QV++ L VL+
Sbjct: 1 MSQYAAELCKLLITDNFGELYALIFIYLLNHGRQPLPR--IVQNTHLSPRQVRHGLAVLV 58
Query: 60 QQNCVQAFTTEQPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQG 119
QQ+ V T DG T Y + + + VR K + ++ + + +V
Sbjct: 59 QQHLV-FHCTSLDDGI-------TYYESNWRSAYNLVRSGKIIQLVEERLGNRAASIVST 110
Query: 120 LLEHG 124
LL G
Sbjct: 111 LLALG 115
Score = 36.2 bits (82), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 36/165 (21%), Positives = 73/165 (44%), Gaps = 12/165 (7%)
Query: 359 EVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLME 418
E+E ++ R+G A RI R+L+ G+L E ++ + + + KD +IL ++ G++ ++
Sbjct: 490 ELERLIEARFGGFAVRIVRVLAAKGKLDEK-RLQEISLMASKDLRQILGQMASAGFVELQ 548
Query: 419 KLVVTGARQSQ--FLLWKVNRQILWKHVLDEMFHAALNLSLRVSYELDREKELLNLPADK 476
++ RQ LW + + V+++ + + R+ E ++ K LL
Sbjct: 549 EVPRDAQRQPSRTMYLWFYDPDRVRFMVIEDTYKSMSRCLQRIRVEREKLKFLLEKTERS 608
Query: 477 RTGPLQDRY---------NRIRKVRILLESSQMKLDDAILLFHDF 512
+DRY R LL +LD+ + + D+
Sbjct: 609 DVKGNEDRYLSAAELQTLKEWRDTEKLLLGEVARLDELVAVLRDY 653
>sp|A6RPU8|RPC3_BOTFB DNA-directed RNA polymerase III subunit rpc3 OS=Botryotinia
fuckeliana (strain B05.10) GN=rpc82 PE=3 SV=1
Length = 637
Score = 42.4 bits (98), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 36/178 (20%), Positives = 86/178 (48%), Gaps = 12/178 (6%)
Query: 346 LDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKI 405
+DFE++I+ + E++S++ + +G+ +R+ R++ K G+ LE I+ ++++D+
Sbjct: 461 VDFERVIDRLRESELDSIIYENFGQIGHRLVRVMRKMGK-LEEKHIAKLALIKQQDSRTT 519
Query: 406 LYKLWKDGYLLMEKLVVTGARQ--SQFLLWKVNRQILWKHVLDEMFHAALNLSLRVSYEL 463
L + G + ++++ R LW + + +LD + A R+ E
Sbjct: 520 LVNMQMHGMVDIQEVPRDTGRMIVRTIHLWFCDEDRVTSLLLDRTYKAMSRCLQRLDVEK 579
Query: 464 DREKELLNLPADKRTGPLQDRY------NRIRKVRILLES--SQM-KLDDAILLFHDF 512
R+ ++ L ++ + N++R++R E Q+ +LD+ + +F D+
Sbjct: 580 RRKANIIALSERTDVQGQEEAFLRPEQMNQLREIRAKEEDLLGQICRLDELVGIFQDY 637
>sp|Q8WZW7|RPC3_NEUCR DNA-directed RNA polymerase III subunit rpc-3 OS=Neurospora crassa
(strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257
/ FGSC 987) GN=rpc-82 PE=3 SV=1
Length = 624
Score = 42.0 bits (97), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 80/360 (22%), Positives = 140/360 (38%), Gaps = 64/360 (17%)
Query: 18 FGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQPDGFAD 77
+G L A+V L ++G L+ + + ++++LS QVKN L VL Q N + F + D
Sbjct: 19 YGQLPARVYATLFQRGKLSVRLISQFSKLSARQVKNGLCVLQQHNLL--FYS------VD 70
Query: 78 GPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTLKQMFDRAKS 137
+Y V + + VR K L ++ + +++Q LL G+ + + ++
Sbjct: 71 ANSGEAEYSVNHEYAYNLVRTGKILEMVDNSYGPAGRDVMQNLLLLGQTRISDLVAAYQA 130
Query: 138 SEKEGNLVDL--------------DSLRETLVKLV--------------TAHYVERCPAS 169
E N D L L +L+ +AH +E+
Sbjct: 131 KINEVNNDDAWLNDKKPELAIKSKAQLNSVLCRLIEAELIDVIHSKTFQSAHEIEKQVHR 190
Query: 170 EPLLMPISEEEGPARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEK 229
E +M + G KG+K+ KI EQ+V E + ++ + + G
Sbjct: 191 E--VMDVYFSNGI---KGTKA--KI----EFEQRVAEGLRKVREESKTLKRKLAQNGGAS 239
Query: 230 EK------NSNNVTPGEKRKHDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVR 283
++ N N P E+ D D + V+ R N+E I LR + + +V
Sbjct: 240 KRRKLAVGNETNGAPEEEEDLD-------PALDPRQVI-RINYEKCIVELRSRRLVQYVN 291
Query: 284 AHLDDGAANVLSAMLQATSSAEKKVKTKNSVPLSLSSIYEEVIKSEAGRNMTLDHVRASL 343
L + V +L+ + K + S PL + EE + N LD V+ S+
Sbjct: 292 ETLGETTGYVYGQLLKQLT---KNISRCKSDPLIDALTPEEKVTPSVTTNEILDKVKTSI 348
Score = 36.2 bits (82), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 35/180 (19%), Positives = 83/180 (46%), Gaps = 16/180 (8%)
Query: 346 LDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKI 405
+DF+ ++E + E++S++ + GR R+ R+L G+L E + + + K D +
Sbjct: 448 VDFKPLMENLRATELDSIIEQTSGRQGLRLIRILRTKGKLGE-QALQSLSLMRKVDLQQK 506
Query: 406 LYKLWKDGYLLMEKLVVTGAR--QSQFLLWKVNRQILWKHVLDEMFHAALNLSLRVSYEL 463
+ ++ G+ +++ + LW + + + ++ + + ++ +
Sbjct: 507 MLEMRLVGFAHTQEVPRDNKADPKKSIFLWYCDTEQAYSSLIAKCYATMVHCLQVLEVRR 566
Query: 464 DREKELLNLPADKRT---GPLQD--------RYNRIRKVRILLESSQMKLDDAILLFHDF 512
++K++L+L KRT G +D R+ + K LL + M++DD + L D+
Sbjct: 567 QKDKDVLSLA--KRTNVKGKEKDMMRDESYARFAKFLKDERLLMAEMMRIDDTLALLQDY 624
>sp|Q2U9X7|RPC3_ASPOR DNA-directed RNA polymerase III subunit rpc3 OS=Aspergillus oryzae
(strain ATCC 42149 / RIB 40) GN=rpc82 PE=3 SV=1
Length = 653
Score = 42.0 bits (97), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 30/127 (23%), Positives = 62/127 (48%), Gaps = 3/127 (2%)
Query: 346 LDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKI 405
++F + ++ E+E ++ RYG A R+ R+L G+L E ++ + + + KD ++
Sbjct: 477 VEFRHLARKLRHLELERIIEARYGDVALRVVRVLHDKGKLDEK-RLQEISLLPFKDLRQV 535
Query: 406 LYKLWKDGYLLMEKLVVTGARQSQ--FLLWKVNRQILWKHVLDEMFHAALNLSLRVSYEL 463
L + G++ ++++ RQ LW + + VL++ + A R+ +E
Sbjct: 536 LASMQTGGFVDLQEVPRDALRQPSKTIFLWFYDPDRVGNSVLEDTYKAMSRCLQRLRFER 595
Query: 464 DREKELL 470
R KE L
Sbjct: 596 SRLKEFL 602
>sp|Q5ATV8|RPC3_EMENI DNA-directed RNA polymerase III subunit rpc3 OS=Emericella nidulans
(strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 /
M139) GN=rpc82 PE=3 SV=2
Length = 623
Score = 41.6 bits (96), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 41/193 (21%), Positives = 87/193 (45%), Gaps = 14/193 (7%)
Query: 333 NMTLDHVRASLVQ--LDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDK 390
N+T + ++ ++F + ++ E+E +V RYG A R+ R+L G+L E +
Sbjct: 432 NLTSKRLNGGIINWTVEFRHLARKLRHLELERIVEARYGDVALRVLRVLQAKGKLDEK-R 490
Query: 391 ISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTGARQSQ--FLLWKVNRQILWKHVLDEM 448
+ + + + KD ++L + G++ ++++ RQ LW + +L +
Sbjct: 491 LQEISLLPFKDLRQVLASMQTGGFVDLQEVPRDAQRQPSRTIYLWYYDPDRARDSMLQDT 550
Query: 449 FHAALNLSLRVSYELDREKELL------NLPADKRTGPLQDRYNRIRKVR---ILLESSQ 499
+ A R+ +E R K+ L ++ ++ + +R+R+ R LL
Sbjct: 551 YKAMSRCLQRLKFERGRLKDFLEKTERSDVKGNEELYLSEGELDRLREWRAKEALLIGEV 610
Query: 500 MKLDDAILLFHDF 512
+LDD I + D+
Sbjct: 611 ARLDDMIAVMRDY 623
>sp|A1CZP6|RPC3_NEOFI DNA-directed RNA polymerase III subunit rpc3 OS=Neosartorya
fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 /
NRRL 181) GN=rpc82 PE=3 SV=1
Length = 655
Score = 40.8 bits (94), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 68/142 (47%), Gaps = 5/142 (3%)
Query: 333 NMTLDHVRASLVQ--LDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDK 390
N+T + + L+ ++F + ++ E+E ++ RYG A R+ R+L G+L E +
Sbjct: 464 NLTSKRMVSGLITWTVEFRHLARKLRHLELERMIEARYGDVALRVVRVLHAKGKLDEK-R 522
Query: 391 ISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTGARQSQ--FLLWKVNRQILWKHVLDEM 448
+ + + + KD ++L + G++ ++++ RQ LW + + VL +
Sbjct: 523 LQEISLLPFKDLRQVLASMQAGGFVDLQEVPRDAQRQPSRTIYLWYYDPDRICNSVLQDT 582
Query: 449 FHAALNLSLRVSYELDREKELL 470
+ A R+ +E R K+ L
Sbjct: 583 YKAMSRCLQRLRFERSRIKDFL 604
Score = 39.3 bits (90), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 51/112 (45%), Gaps = 8/112 (7%)
Query: 13 VITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQP 72
++ +FG+L ++ L R L +K Y+EL + Q+ AL +IQQ+ V +T+
Sbjct: 32 LVEENFGELFGRIFATLSRYDRLNLPRLKAYSELPNRQLLPALAAMIQQHLVYHYTS--- 88
Query: 73 DGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHG 124
+ DG T Y + + VR K L + + + ++ ++ G
Sbjct: 89 --YDDGV---TYYEANMQSAYYLVRSGKILEFVEERLGKYAATVLSTIMNLG 135
>sp|Q4WEU2|RPC3_ASPFU DNA-directed RNA polymerase III subunit rpc3 OS=Neosartorya
fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 /
FGSC A1100) GN=rpc82 PE=3 SV=1
Length = 629
Score = 40.4 bits (93), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 68/142 (47%), Gaps = 5/142 (3%)
Query: 333 NMTLDHVRASLVQ--LDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDK 390
N+T + + L+ ++F + ++ E+E ++ RYG A R+ R+L G+L E +
Sbjct: 438 NLTSKRMVSGLITWTVEFRHLARKLRHLELERMIEARYGDVALRVVRVLHAKGKLDEK-R 496
Query: 391 ISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTGARQSQ--FLLWKVNRQILWKHVLDEM 448
+ + + + KD ++L + G++ ++++ RQ LW + + VL +
Sbjct: 497 LQEISLLPFKDLRQVLASMQAGGFVDLQEVPRDAQRQPSRTIYLWYYDPDRICNSVLQDT 556
Query: 449 FHAALNLSLRVSYELDREKELL 470
+ A R+ +E R K+ L
Sbjct: 557 YKAMSRCLQRLRFERSRIKDFL 578
Score = 39.7 bits (91), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 57/115 (49%), Gaps = 14/115 (12%)
Query: 1 MLTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQ 60
M +++ + ++ +FG+L ++ L R L +K Y+EL + Q+ AL +IQ
Sbjct: 1 MTSQFAAELCELLVEENFGELFGRIFATLSRYDRLNLPRLKAYSELPNRQLLPALAAMIQ 60
Query: 61 QNCVQAFTTEQPDGFADGP---KANTQ---YVVLFDNILHRV--RFAKF-LTILS 106
Q+ V +T+ + DG +AN Q Y+V IL V R K+ T+LS
Sbjct: 61 QHLVYHYTS-----YDDGVTYYEANMQSAYYLVRSGKILEFVEERLGKYAATVLS 110
>sp|A5DRM4|RPC3_LODEL DNA-directed RNA polymerase III subunit RPC3 OS=Lodderomyces
elongisporus (strain ATCC 11503 / CBS 2605 / JCM 1781 /
NBRC 1676 / NRRL YB-4239) GN=RPC82 PE=3 SV=1
Length = 610
Score = 40.4 bits (93), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 55/113 (48%), Gaps = 9/113 (7%)
Query: 17 HFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQ-PDGF 75
H G++ + + LL G L + + T+L+ + +K+A++ LIQ NC+ + ++ P F
Sbjct: 26 HLGEVASVIITTLLASGRLNIKQISVKTKLAIKSIKSAIVSLIQLNCLYYWQDDKNPTIF 85
Query: 76 ADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTL 128
Y V + V L ++QE+ + E++Q ++ +G L L
Sbjct: 86 --------YYSVNETGLKTLVYSGDILNHITQEYGDEEAEIIQNIIMNGHLKL 130
>sp|Q0CE91|RPC3_ASPTN DNA-directed RNA polymerase III subunit rpc3 OS=Aspergillus
terreus (strain NIH 2624 / FGSC A1156) GN=rpc82 PE=3
SV=1
Length = 650
Score = 39.7 bits (91), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 39/68 (57%)
Query: 2 LTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQ 61
+++Y + ++ ++FG+L + L+R LT ++ Y++L D Q++ L ++QQ
Sbjct: 1 MSQYIAELCTLLVEDNFGELFGHIFATLIRYDRLTLPRLRLYSKLPDAQLRRGLAAMVQQ 60
Query: 62 NCVQAFTT 69
+ V +T+
Sbjct: 61 HLVYHYTS 68
Score = 37.4 bits (85), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 33/147 (22%), Positives = 70/147 (47%), Gaps = 5/147 (3%)
Query: 328 SEAGRNMTLDHVRASLVQ--LDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRL 385
SE N+T V A+L ++F + ++ E+E ++ RYG A R+ R+L G+L
Sbjct: 454 SEPPHNLTEKKVVANLPSWTVEFRSLACKLRHLELERMIEARYGDVALRVVRVLHAKGKL 513
Query: 386 LETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTGARQSQ--FLLWKVNRQILWKH 443
E ++ + + + + ++L + G++ ++++ RQ LW +
Sbjct: 514 DEK-RLQEISLLPFRVLRQVLASMQAGGFVDLQEVPRDAQRQPSRTIYLWFYDPDRTRAS 572
Query: 444 VLDEMFHAALNLSLRVSYELDREKELL 470
+L++ + + R+ +E +R KE L
Sbjct: 573 ILEDTYKSMSRCLQRLRFERNRLKEFL 599
>sp|Q758N7|RPC3_ASHGO DNA-directed RNA polymerase III subunit RPC3 OS=Ashbya gossypii
(strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL
Y-1056) GN=RPC82 PE=3 SV=1
Length = 636
Score = 39.3 bits (90), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 69/172 (40%), Gaps = 19/172 (11%)
Query: 13 VITNHFGDLVAKVCECLLRKGPLT-RQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQ 71
V +H G+ +V E LL KG L+ + V EL + V+ L+ LIQ CVQ
Sbjct: 40 VARSHLGERAGRVIELLLNKGRLSVSELVHLAPELGSKSVRTVLVSLIQLRCVQYLEETT 99
Query: 72 PDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFD-----QQCVELVQGLLEHGRL 126
G + T Y D + + + +F+ + ++VQ +L G L
Sbjct: 100 VSG-----RKITYYYFNEDGFQLMLYAGDIVAAVESQFEADDAKEIAAQIVQNVLALGSL 154
Query: 127 TLKQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISE 178
T K S V ++ + VKLV ++ P S MP+++
Sbjct: 155 TTKDYMQSLASD------VSVNDVASMFVKLVELGFL--VPLSNVHYMPLAD 198
>sp|Q6CWJ7|RPC3_KLULA DNA-directed RNA polymerase III subunit RPC3 OS=Kluyveromyces
lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC
1267 / NRRL Y-1140 / WM37) GN=RPC82 PE=3 SV=1
Length = 657
Score = 39.3 bits (90), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 37/158 (23%), Positives = 68/158 (43%), Gaps = 20/158 (12%)
Query: 16 NHFGDLVAKVCECLLRKGPLTRQNVKRYT-ELSDEQVKNALLVLIQQNCVQAFTTEQPDG 74
+H G+ + V L+ KG L+ + + + ELS +K L+ LIQ CVQ G
Sbjct: 59 SHLGERASTVLSVLVNKGRLSTREIHSFIPELSLSSIKTVLVSLIQLRCVQYLEETSLSG 118
Query: 75 FADGPKANTQYVVLFDNILHRVRFA-----KFLTILSQEFDQQCVELVQGLLEH----GR 125
T Y + L + +A + + +Q+ +Q V + Q ++ + G
Sbjct: 119 ------RKTLYYYFNEEGLFLMLYAGDISDRIVQYFNQDEEQHLVNIAQQIIHNVLALGS 172
Query: 126 LTLKQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYV 163
LT+K +SE N D+ ++ + V+L ++
Sbjct: 173 LTVKDYL----ASESNSNDTDIFNIHQAFVRLADLEFL 206
>sp|Q2GUW6|RPC3_CHAGB DNA-directed RNA polymerase III subunit RPC3 OS=Chaetomium globosum
(strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 6347 /
NRRL 1970) GN=RPC82 PE=3 SV=1
Length = 628
Score = 37.4 bits (85), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 36/178 (20%), Positives = 77/178 (43%), Gaps = 12/178 (6%)
Query: 346 LDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKI 405
+DF +++ + E++SV+ + GR R+ R+L G+L E + + + K + +
Sbjct: 452 VDFVPVMKSLREAELDSVIERTCGRQGLRLVRILRAKGKLDEK-ALPNVALMRKPELQQK 510
Query: 406 LYKLWKDGYLLMEKLV--VTGARQSQFLLWKVNRQILWKHVLD----EMFHA-----ALN 454
+ ++ G++ ++++ + + F LW + +LD M H AL
Sbjct: 511 MLEMQTAGFVSVQEVPRDLKADVKKSFFLWFCDMDSSLSRLLDTGYVTMVHCLQVLEALR 570
Query: 455 LSLRVSYELDREKELLNLPADKRTGPLQDRYNRIRKVRILLESSQMKLDDAILLFHDF 512
R E + ++ D +RY+R + L + M++DD + + DF
Sbjct: 571 RKERDVLETTKRTDVRGREKDTMRKSYYERYSRFLESERKLFAQVMRVDDLVSVLRDF 628
>sp|Q9V7P1|UTP18_DROME U3 small nucleolar RNA-associated protein 18 homolog OS=Drosophila
melanogaster GN=wcd PE=1 SV=1
Length = 506
Score = 34.3 bits (77), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 45/153 (29%), Positives = 70/153 (45%), Gaps = 35/153 (22%)
Query: 178 EEEGPARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFS----VVTNVESDVGEK---- 229
E+E PA+ K + K + + E VE +PME + F ++TN+ VG+K
Sbjct: 24 EQEKPAKIKRERYIPKASQAK--ELNYVE--VPMEKVLFGDRQRLLTNLAKSVGQKLPND 79
Query: 230 -----EKNSNNVTPGEKRKHDVLELDECGVADEQSVVYRANFEGFIRR-LRHKGCIDHVR 283
E+N PG+KRK + D DE V G +++ +H G ++H+R
Sbjct: 80 DEDEQEENPGQAKPGDKRKAAWSDSD-----DEDLQV------GDVKKATKHTGPLNHLR 128
Query: 284 AHLDDGAANVLSAMLQATSS----AEKKVKTKN 312
D L+A Q T + AEKKVK ++
Sbjct: 129 K--DKSYKEYLTARFQRTLNQPKWAEKKVKNED 159
>sp|Q6BQ18|RPC3_DEBHA DNA-directed RNA polymerase III subunit RPC3 OS=Debaryomyces
hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC
0083 / IGC 2968) GN=RPC82 PE=3 SV=2
Length = 606
Score = 33.5 bits (75), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 31/54 (57%)
Query: 17 HFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTE 70
H G++ A + L+ G LT +++ +E+ + VK+ L+ LIQ +C+ + E
Sbjct: 26 HLGEVAAIIVSTLISYGRLTAKDLSNKSEVPLKLVKSTLVSLIQLSCISYWKEE 79
>sp|Q5V385|CDC61_HALMA Cell division control protein 6 homolog 1 OS=Haloarcula marismortui
(strain ATCC 43049 / DSM 3752 / JCM 8966 / VKM B-1809)
GN=cdc6-1 PE=3 SV=2
Length = 416
Score = 32.7 bits (73), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 32/59 (54%), Gaps = 7/59 (11%)
Query: 321 IYEEVIKSEAGRNMTLDHVRASLVQLDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLL 379
+YEEV K+EA +T D +R L +L F +I E N+E + G+ Y+ RLL
Sbjct: 345 VYEEVCKTEATDTLTTDTIRGLLNELAFLEITE--SNQEHGGM-----GKGTYKEHRLL 396
>sp|A5DQA6|RPC3_PICGU DNA-directed RNA polymerase III subunit RPC3 OS=Meyerozyma
guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381 /
JCM 1539 / NBRC 10279 / NRRL Y-324) GN=RPC82 PE=3 SV=2
Length = 588
Score = 32.7 bits (73), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 25/110 (22%), Positives = 48/110 (43%), Gaps = 8/110 (7%)
Query: 17 HFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQPDGFA 76
H G + A L+ G +T + + + + VK L+ LIQ CVQ + E+ G
Sbjct: 27 HLGSVAAVCISILISSGRMTVKQLSSKAGIPVKTVKTTLVSLIQLRCVQ-YWREEGSG-- 83
Query: 77 DGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRL 126
Y + I ++ + + + E+ ++ E++Q +LE G +
Sbjct: 84 -----RVLYSFNEEGIWILLQSGEIINWIRCEYGEEEAEIIQNILEIGHI 128
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.134 0.374
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 177,241,727
Number of Sequences: 539616
Number of extensions: 7111109
Number of successful extensions: 22608
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 35
Number of HSP's that attempted gapping in prelim test: 22525
Number of HSP's gapped (non-prelim): 92
length of query: 512
length of database: 191,569,459
effective HSP length: 122
effective length of query: 390
effective length of database: 125,736,307
effective search space: 49037159730
effective search space used: 49037159730
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.9 bits)