Query 010353
Match_columns 512
No_of_seqs 130 out of 269
Neff 8.0
Searched_HMMs 29240
Date Mon Mar 25 04:57:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010353.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010353hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xub_A DNA-directed RNA polyme 100.0 8E-89 2.7E-93 733.5 41.0 474 2-512 1-526 (534)
2 2xub_A DNA-directed RNA polyme 99.1 2E-08 6.7E-13 107.9 28.8 216 9-302 90-374 (534)
3 1q1h_A TFE, transcription fact 98.2 1.7E-06 5.9E-11 72.5 6.8 103 359-463 7-110 (110)
4 1q1h_A TFE, transcription fact 96.5 0.0065 2.2E-07 50.3 7.7 83 8-94 6-89 (110)
5 2qlz_A Transcription factor PF 96.3 0.032 1.1E-06 52.8 11.5 134 20-166 12-211 (232)
6 2nr3_A Hypothetical protein; A 95.4 0.2 6.8E-06 44.3 11.9 124 18-168 22-162 (183)
7 1xmk_A Double-stranded RNA-spe 95.4 0.018 6.1E-07 44.8 4.7 57 372-437 13-70 (79)
8 2oqg_A Possible transcriptiona 95.3 0.29 1E-05 40.0 12.5 81 1-92 2-82 (114)
9 1r1u_A CZRA, repressor protein 95.3 0.12 4E-06 42.3 9.8 76 8-94 14-89 (106)
10 3pqk_A Biofilm growth-associat 94.8 0.28 9.7E-06 39.5 10.7 82 13-111 16-97 (102)
11 3bz6_A UPF0502 protein pspto_2 94.7 0.53 1.8E-05 41.7 12.6 124 18-168 22-162 (183)
12 2htj_A P fimbrial regulatory p 94.6 0.097 3.3E-06 40.5 7.0 44 23-66 3-46 (81)
13 3r0a_A Putative transcriptiona 94.4 0.51 1.8E-05 39.6 11.7 74 360-436 14-91 (123)
14 3jth_A Transcription activator 94.3 0.16 5.4E-06 40.7 7.9 64 19-93 22-85 (98)
15 1qbj_A Protein (double-strande 94.0 0.057 1.9E-06 42.2 4.4 45 373-418 13-60 (81)
16 3cuo_A Uncharacterized HTH-typ 93.9 0.25 8.6E-06 39.2 8.5 65 19-93 23-87 (99)
17 3r0a_A Putative transcriptiona 93.6 0.26 9E-06 41.4 8.4 58 12-69 16-77 (123)
18 1u2w_A CADC repressor, cadmium 93.6 0.33 1.1E-05 40.7 8.9 68 19-96 41-108 (122)
19 2kko_A Possible transcriptiona 93.5 0.32 1.1E-05 39.8 8.5 73 10-93 15-87 (108)
20 1ku9_A Hypothetical protein MJ 93.4 1.3 4.5E-05 37.5 12.9 61 370-434 26-87 (152)
21 2d1h_A ST1889, 109AA long hypo 93.4 0.61 2.1E-05 37.3 10.1 50 18-67 19-69 (109)
22 1oyi_A Double-stranded RNA-bin 93.3 0.045 1.6E-06 42.7 2.8 45 371-417 18-62 (82)
23 3bdd_A Regulatory protein MARR 92.7 2.4 8.1E-05 35.5 13.4 75 11-92 20-96 (142)
24 2lkp_A Transcriptional regulat 92.7 0.77 2.6E-05 37.9 9.9 80 2-92 14-93 (119)
25 1r1t_A Transcriptional repress 92.7 0.75 2.6E-05 38.5 9.8 74 10-94 36-109 (122)
26 1qgp_A Protein (double strande 92.6 0.1 3.5E-06 40.3 3.9 45 373-418 17-64 (77)
27 1ub9_A Hypothetical protein PH 92.6 0.61 2.1E-05 36.9 8.9 67 19-92 15-81 (100)
28 2jsc_A Transcriptional regulat 92.4 0.23 7.9E-06 41.4 6.1 69 14-93 15-83 (118)
29 1ldj_A Cullin homolog 1, CUL-1 92.3 0.8 2.7E-05 50.8 12.2 135 32-167 601-750 (760)
30 1qgp_A Protein (double strande 92.3 0.34 1.1E-05 37.3 6.5 44 22-65 16-62 (77)
31 2zkz_A Transcriptional repress 92.2 0.53 1.8E-05 37.8 7.9 67 19-96 26-92 (99)
32 1sfx_A Conserved hypothetical 92.1 1.3 4.6E-05 35.1 10.5 51 18-68 18-68 (109)
33 3eyi_A Z-DNA-binding protein 1 91.9 0.19 6.4E-06 37.4 4.3 58 373-435 13-71 (72)
34 1sfx_A Conserved hypothetical 91.8 0.9 3.1E-05 36.2 9.0 62 370-436 20-81 (109)
35 1xmk_A Double-stranded RNA-spe 91.7 0.21 7.2E-06 38.7 4.7 46 20-65 11-57 (79)
36 3f6o_A Probable transcriptiona 91.3 0.79 2.7E-05 38.0 8.3 69 14-93 12-80 (118)
37 2lnb_A Z-DNA-binding protein 1 90.6 0.26 9E-06 37.5 4.0 43 373-415 22-64 (80)
38 1sfu_A 34L protein; protein/Z- 90.4 0.11 3.7E-06 39.7 1.9 36 383-418 27-62 (75)
39 3boq_A Transcriptional regulat 90.3 4.8 0.00017 34.4 13.0 115 368-503 45-160 (160)
40 2fu4_A Ferric uptake regulatio 90.1 0.63 2.2E-05 35.8 6.2 49 20-68 17-72 (83)
41 2hr3_A Probable transcriptiona 90.1 5.8 0.0002 33.3 13.1 62 23-91 38-100 (147)
42 1oyi_A Double-stranded RNA-bin 90.0 0.5 1.7E-05 36.8 5.3 46 20-66 17-62 (82)
43 1ku9_A Hypothetical protein MJ 89.9 3.6 0.00012 34.6 11.6 50 18-67 24-74 (152)
44 3f6v_A Possible transcriptiona 89.9 0.83 2.8E-05 39.9 7.5 64 19-93 57-120 (151)
45 2l02_A Uncharacterized protein 89.8 0.5 1.7E-05 36.5 5.1 51 15-65 3-53 (82)
46 1z7u_A Hypothetical protein EF 89.8 6.3 0.00022 32.0 12.5 65 19-91 21-86 (112)
47 2pex_A Transcriptional regulat 89.3 2.3 7.7E-05 36.4 9.9 48 20-67 47-94 (153)
48 2htj_A P fimbrial regulatory p 89.1 0.69 2.4E-05 35.5 5.7 44 373-417 3-46 (81)
49 2hzt_A Putative HTH-type trans 89.0 2.3 8E-05 34.4 9.2 64 20-91 14-78 (107)
50 2vxz_A Pyrsv_GP04; viral prote 88.6 2 6.7E-05 37.1 8.4 74 373-456 14-87 (165)
51 1xn7_A Hypothetical protein YH 88.5 0.84 2.9E-05 35.1 5.7 44 23-66 5-48 (78)
52 2l02_A Uncharacterized protein 88.4 0.62 2.1E-05 36.0 4.7 55 365-420 3-57 (82)
53 2nnn_A Probable transcriptiona 88.4 3.2 0.00011 34.6 10.0 49 19-67 37-85 (140)
54 3bro_A Transcriptional regulat 88.4 9.8 0.00034 31.5 13.5 49 20-68 34-84 (141)
55 1lj9_A Transcriptional regulat 88.3 4.7 0.00016 33.7 11.2 67 18-91 27-93 (144)
56 2p4w_A Transcriptional regulat 88.3 1.4 4.6E-05 40.5 8.0 69 19-93 14-82 (202)
57 2vxz_A Pyrsv_GP04; viral prote 88.2 2.4 8.2E-05 36.5 8.7 91 23-137 14-106 (165)
58 3bja_A Transcriptional regulat 88.2 5.6 0.00019 32.9 11.5 65 20-91 33-97 (139)
59 2eth_A Transcriptional regulat 87.9 6.8 0.00023 33.3 12.1 66 19-91 43-108 (154)
60 3bpv_A Transcriptional regulat 87.9 4.2 0.00014 33.8 10.5 51 18-68 27-77 (138)
61 1y0u_A Arsenical resistance op 87.9 1.3 4.4E-05 35.1 6.7 45 19-65 30-74 (96)
62 2fbh_A Transcriptional regulat 87.8 5.7 0.0002 33.2 11.4 50 19-68 36-86 (146)
63 1qbj_A Protein (double-strande 87.8 0.92 3.1E-05 35.2 5.5 45 21-65 11-58 (81)
64 1jgs_A Multiple antibiotic res 87.7 3.9 0.00013 34.0 10.2 66 19-91 33-98 (138)
65 3lmm_A Uncharacterized protein 87.7 0.91 3.1E-05 48.7 7.4 124 21-167 431-564 (583)
66 3cjn_A Transcriptional regulat 87.4 4.9 0.00017 34.5 11.0 65 20-91 52-116 (162)
67 3tgn_A ADC operon repressor AD 87.4 2.4 8.1E-05 35.8 8.7 46 20-66 38-83 (146)
68 2xvc_A ESCRT-III, SSO0910; cel 87.3 0.65 2.2E-05 33.1 3.9 45 374-418 14-58 (59)
69 2rdp_A Putative transcriptiona 87.1 3.9 0.00013 34.6 9.9 49 20-68 42-90 (150)
70 2a61_A Transcriptional regulat 87.1 4.1 0.00014 34.2 10.0 51 18-68 31-81 (145)
71 2fbi_A Probable transcriptiona 87.0 3.6 0.00012 34.3 9.6 51 18-68 34-84 (142)
72 2d1h_A ST1889, 109AA long hypo 87.0 2.2 7.5E-05 33.9 7.8 67 369-437 20-87 (109)
73 2hye_C Cullin-4A, CUL-4A; beta 86.9 2.3 7.9E-05 47.1 10.3 128 32-167 605-749 (759)
74 2l01_A Uncharacterized protein 86.8 1.8 6.3E-05 32.9 6.4 54 15-69 5-59 (77)
75 2k02_A Ferrous iron transport 86.7 0.99 3.4E-05 35.5 5.2 45 23-67 5-49 (87)
76 1yyv_A Putative transcriptiona 86.6 5.7 0.00019 33.5 10.5 65 19-91 34-99 (131)
77 3g3z_A NMB1585, transcriptiona 86.6 4.9 0.00017 33.8 10.2 47 20-66 31-77 (145)
78 2cg4_A Regulatory protein ASNC 86.5 2 6.9E-05 37.0 7.8 66 372-438 10-79 (152)
79 1sd4_A Penicillinase repressor 86.4 3.8 0.00013 33.8 9.2 100 20-131 10-113 (126)
80 2fsw_A PG_0823 protein; alpha- 86.2 1.9 6.4E-05 34.9 7.0 65 19-91 24-89 (107)
81 1okr_A MECI, methicillin resis 86.2 5.2 0.00018 32.7 9.9 101 19-131 9-113 (123)
82 2cfx_A HTH-type transcriptiona 86.1 3 0.0001 35.7 8.5 67 372-439 7-77 (144)
83 2bv6_A MGRA, HTH-type transcri 86.1 2.7 9.3E-05 35.3 8.3 66 19-91 36-101 (142)
84 3cdh_A Transcriptional regulat 85.7 12 0.00042 31.6 12.5 47 20-66 43-89 (155)
85 2l01_A Uncharacterized protein 85.6 0.88 3E-05 34.7 4.2 57 365-422 5-62 (77)
86 3bpv_A Transcriptional regulat 85.6 10 0.00035 31.3 11.7 52 369-421 28-79 (138)
87 3bja_A Transcriptional regulat 85.5 7.8 0.00027 32.0 10.9 61 369-433 32-92 (139)
88 2heo_A Z-DNA binding protein 1 85.5 1.7 5.9E-05 32.1 5.8 44 22-65 12-56 (67)
89 3bj6_A Transcriptional regulat 85.3 16 0.00053 30.7 13.1 50 368-418 38-87 (152)
90 2oqg_A Possible transcriptiona 85.3 9 0.00031 30.7 10.8 61 370-439 21-81 (114)
91 3oop_A LIN2960 protein; protei 85.2 4.4 0.00015 34.0 9.2 47 20-66 37-83 (143)
92 1s3j_A YUSO protein; structura 85.2 8.3 0.00028 32.6 11.1 52 367-419 34-85 (155)
93 3b73_A PHIH1 repressor-like pr 85.2 0.97 3.3E-05 37.3 4.7 60 19-91 12-73 (111)
94 2h09_A Transcriptional regulat 85.2 7.6 0.00026 33.2 10.9 61 348-417 26-86 (155)
95 2heo_A Z-DNA binding protein 1 85.2 0.81 2.8E-05 33.9 3.8 43 373-415 13-55 (67)
96 2a61_A Transcriptional regulat 85.2 6.5 0.00022 32.8 10.3 53 368-421 31-83 (145)
97 2bv6_A MGRA, HTH-type transcri 84.9 4.1 0.00014 34.1 8.9 51 368-419 35-85 (142)
98 1z6r_A MLC protein; transcript 84.8 1.2 4E-05 45.4 6.2 66 23-91 19-84 (406)
99 3dpl_C Cullin-5; ubiquitin, NE 84.8 4 0.00014 41.3 10.0 132 33-167 214-372 (382)
100 2fa5_A Transcriptional regulat 84.7 5.7 0.0002 34.0 9.9 47 20-66 49-95 (162)
101 3bj6_A Transcriptional regulat 84.7 17 0.00057 30.5 13.7 51 18-68 38-88 (152)
102 1p4x_A Staphylococcal accessor 84.6 7.8 0.00027 36.6 11.5 138 16-168 28-209 (250)
103 1xn7_A Hypothetical protein YH 84.3 1.5 5.2E-05 33.7 5.1 46 114-167 5-50 (78)
104 1s3j_A YUSO protein; structura 84.3 11 0.00037 31.9 11.5 48 20-67 37-84 (155)
105 2hoe_A N-acetylglucosamine kin 84.3 1.4 4.7E-05 44.5 6.4 64 24-92 24-87 (380)
106 3bro_A Transcriptional regulat 84.1 8.7 0.0003 31.8 10.6 52 369-421 33-86 (141)
107 2qww_A Transcriptional regulat 84.1 12 0.00042 31.5 11.8 47 20-66 41-87 (154)
108 2ia0_A Putative HTH-type trans 84.0 3.7 0.00013 36.3 8.5 66 371-438 18-87 (171)
109 1z91_A Organic hydroperoxide r 84.0 3.5 0.00012 34.7 8.0 66 20-92 40-105 (147)
110 2nyx_A Probable transcriptiona 83.9 8.9 0.0003 33.3 10.9 48 20-67 45-92 (168)
111 2p5v_A Transcriptional regulat 83.8 3.5 0.00012 35.9 8.1 68 371-439 11-82 (162)
112 2gxg_A 146AA long hypothetical 83.6 18 0.00061 30.0 13.7 48 20-68 37-84 (146)
113 3k0l_A Repressor protein; heli 83.3 14 0.0005 31.5 12.0 61 368-432 44-104 (162)
114 1ub9_A Hypothetical protein PH 83.2 9.8 0.00033 29.5 9.9 65 369-438 15-79 (100)
115 4a5n_A Uncharacterized HTH-typ 83.1 3.2 0.00011 35.2 7.2 68 16-91 21-90 (131)
116 2jt1_A PEFI protein; solution 82.9 1.7 5.8E-05 33.3 4.8 44 22-65 6-55 (77)
117 2qww_A Transcriptional regulat 82.8 6 0.00021 33.6 9.1 49 368-417 39-87 (154)
118 3hsr_A HTH-type transcriptiona 82.8 9.8 0.00034 31.7 10.4 48 20-67 36-83 (140)
119 3e6m_A MARR family transcripti 82.5 9.4 0.00032 32.7 10.4 51 367-418 50-100 (161)
120 2fbi_A Probable transcriptiona 82.5 7.7 0.00026 32.2 9.6 53 368-421 34-86 (142)
121 2k02_A Ferrous iron transport 82.5 1.7 5.8E-05 34.2 4.8 46 114-167 5-50 (87)
122 2dk5_A DNA-directed RNA polyme 82.4 1.5 5E-05 34.8 4.5 63 371-436 21-86 (91)
123 3s2w_A Transcriptional regulat 82.3 6.8 0.00023 33.5 9.4 48 20-67 50-97 (159)
124 2f2e_A PA1607; transcription f 82.2 4.5 0.00015 34.8 8.0 61 21-90 25-85 (146)
125 2dbb_A Putative HTH-type trans 82.1 2.9 0.0001 35.9 6.8 69 369-438 8-80 (151)
126 3eco_A MEPR; mutlidrug efflux 82.1 11 0.00036 31.3 10.3 51 370-421 31-83 (139)
127 3k0l_A Repressor protein; heli 81.8 7.1 0.00024 33.6 9.3 48 20-67 46-93 (162)
128 2nnn_A Probable transcriptiona 81.7 4.4 0.00015 33.7 7.7 51 368-419 36-86 (140)
129 3nrv_A Putative transcriptiona 81.6 5.9 0.0002 33.4 8.5 47 20-66 40-86 (148)
130 1t6s_A Conserved hypothetical 81.6 12 0.00042 32.8 10.6 81 347-438 75-155 (162)
131 4hbl_A Transcriptional regulat 81.3 7.7 0.00026 32.8 9.2 48 19-66 40-87 (149)
132 3cjn_A Transcriptional regulat 81.2 13 0.00046 31.6 10.9 53 368-421 50-102 (162)
133 2rdp_A Putative transcriptiona 81.2 10 0.00035 31.8 10.0 51 369-420 41-91 (150)
134 2hr3_A Probable transcriptiona 81.1 12 0.00042 31.2 10.4 48 371-419 36-84 (147)
135 1z05_A Transcriptional regulat 80.8 1.2 4.2E-05 45.6 4.5 66 22-91 41-107 (429)
136 3s2w_A Transcriptional regulat 80.7 11 0.00039 32.0 10.3 62 368-433 48-109 (159)
137 1tbx_A ORF F-93, hypothetical 80.7 9.1 0.00031 30.0 8.8 46 20-65 8-57 (99)
138 2y75_A HTH-type transcriptiona 80.5 1.5 5.1E-05 36.8 4.1 49 369-417 8-58 (129)
139 3cdh_A Transcriptional regulat 80.4 8.2 0.00028 32.8 9.2 50 368-418 41-90 (155)
140 2w25_A Probable transcriptiona 80.4 2.9 0.0001 35.9 6.2 51 18-68 5-55 (150)
141 3ech_A MEXR, multidrug resista 80.4 5.5 0.00019 33.4 7.9 47 20-66 37-83 (142)
142 1lj9_A Transcriptional regulat 80.3 6.7 0.00023 32.8 8.4 51 368-419 27-77 (144)
143 3i4p_A Transcriptional regulat 80.1 2.6 8.7E-05 37.0 5.8 65 373-438 6-74 (162)
144 1i1g_A Transcriptional regulat 80.1 2.4 8.1E-05 35.9 5.4 45 23-67 7-51 (141)
145 3e6m_A MARR family transcripti 79.7 21 0.00072 30.4 11.7 47 20-66 53-99 (161)
146 1p6r_A Penicillinase repressor 79.5 2.8 9.6E-05 31.9 5.2 48 19-66 8-59 (82)
147 2fxa_A Protease production reg 79.4 8.2 0.00028 35.1 9.2 49 20-68 48-96 (207)
148 2pg4_A Uncharacterized protein 79.2 2.9 9.9E-05 32.8 5.3 52 14-65 7-62 (95)
149 3qph_A TRMB, A global transcri 79.0 0.91 3.1E-05 45.3 2.7 78 371-456 19-96 (342)
150 2cfx_A HTH-type transcriptiona 78.9 3.1 0.00011 35.5 5.8 47 21-67 6-52 (144)
151 3u1d_A Uncharacterized protein 78.7 16 0.00055 31.6 10.2 105 10-127 19-127 (151)
152 2frh_A SARA, staphylococcal ac 78.6 7.3 0.00025 32.2 8.0 47 20-66 37-85 (127)
153 2p5v_A Transcriptional regulat 78.5 3.1 0.00011 36.3 5.8 49 20-68 10-58 (162)
154 2w25_A Probable transcriptiona 78.4 4.3 0.00015 34.8 6.6 68 370-438 7-79 (150)
155 3kp7_A Transcriptional regulat 78.4 13 0.00043 31.4 9.7 45 20-65 38-82 (151)
156 3eco_A MEPR; mutlidrug efflux 78.3 27 0.00092 28.7 13.1 48 20-67 31-80 (139)
157 3nqo_A MARR-family transcripti 78.1 24 0.00081 31.2 11.8 50 19-68 40-91 (189)
158 3oop_A LIN2960 protein; protei 78.1 9.4 0.00032 31.9 8.7 50 369-419 36-85 (143)
159 2cyy_A Putative HTH-type trans 78.1 3 0.0001 35.9 5.5 49 20-68 7-55 (151)
160 2gxg_A 146AA long hypothetical 78.1 18 0.00061 30.0 10.5 49 368-418 35-83 (146)
161 2cg4_A Regulatory protein ASNC 78.1 3.2 0.00011 35.7 5.7 50 19-68 7-56 (152)
162 3df8_A Possible HXLR family tr 77.9 6.9 0.00024 31.8 7.4 61 19-91 26-89 (111)
163 2cyy_A Putative HTH-type trans 77.9 2.7 9.1E-05 36.2 5.1 66 372-438 9-78 (151)
164 2dbb_A Putative HTH-type trans 77.9 3.5 0.00012 35.4 5.8 51 18-68 7-57 (151)
165 1on2_A Transcriptional regulat 77.8 26 0.00087 29.2 11.4 42 24-65 12-53 (142)
166 2fu4_A Ferric uptake regulatio 77.3 2.9 0.0001 31.8 4.7 54 111-167 17-72 (83)
167 1i1g_A Transcriptional regulat 77.3 4.1 0.00014 34.3 6.1 66 372-438 6-75 (141)
168 2nyx_A Probable transcriptiona 77.2 18 0.00063 31.2 10.6 51 368-419 43-93 (168)
169 3u2r_A Regulatory protein MARR 76.9 35 0.0012 29.2 12.4 62 368-433 44-107 (168)
170 2pn6_A ST1022, 150AA long hypo 76.9 3.2 0.00011 35.6 5.3 46 23-68 6-51 (150)
171 2y75_A HTH-type transcriptiona 76.9 5 0.00017 33.5 6.4 33 33-65 25-57 (129)
172 3kp7_A Transcriptional regulat 76.2 8.3 0.00028 32.6 7.8 49 368-418 36-84 (151)
173 3cuo_A Uncharacterized HTH-typ 76.0 12 0.00042 28.9 8.2 48 370-418 24-71 (99)
174 3ech_A MEXR, multidrug resista 75.4 6 0.0002 33.1 6.6 51 368-419 35-85 (142)
175 1p6r_A Penicillinase repressor 75.3 4.6 0.00016 30.7 5.3 54 110-167 8-61 (82)
176 2frh_A SARA, staphylococcal ac 75.2 12 0.00041 30.8 8.4 84 370-460 37-122 (127)
177 2e1c_A Putative HTH-type trans 75.2 3.7 0.00013 36.4 5.3 69 369-438 26-98 (171)
178 3i4p_A Transcriptional regulat 75.1 3.8 0.00013 35.8 5.4 46 22-67 5-50 (162)
179 1r1u_A CZRA, repressor protein 74.9 16 0.00056 29.0 8.8 61 370-439 26-86 (106)
180 3bdd_A Regulatory protein MARR 74.9 9.7 0.00033 31.5 7.8 53 368-421 29-81 (142)
181 3fm5_A Transcriptional regulat 74.8 12 0.00041 31.5 8.5 50 369-419 38-88 (150)
182 2k4b_A Transcriptional regulat 74.8 3 0.0001 33.5 4.2 55 109-167 33-87 (99)
183 3deu_A Transcriptional regulat 74.5 41 0.0014 28.9 12.4 49 369-418 52-101 (166)
184 2fbh_A Transcriptional regulat 74.3 6.8 0.00023 32.7 6.7 50 368-418 35-85 (146)
185 4hbl_A Transcriptional regulat 73.9 5.6 0.00019 33.7 6.1 53 368-421 39-91 (149)
186 2eth_A Transcriptional regulat 73.9 6.7 0.00023 33.4 6.6 51 368-419 42-92 (154)
187 3b73_A PHIH1 repressor-like pr 73.7 2.8 9.4E-05 34.5 3.8 57 372-439 15-73 (111)
188 2fa5_A Transcriptional regulat 73.7 7.6 0.00026 33.2 7.0 50 369-419 48-97 (162)
189 1jgs_A Multiple antibiotic res 73.7 6.1 0.00021 32.7 6.2 50 369-419 33-82 (138)
190 3ke2_A Uncharacterized protein 73.6 8.1 0.00028 31.7 6.3 78 27-110 26-103 (117)
191 3f3x_A Transcriptional regulat 73.5 32 0.0011 28.4 10.9 53 367-421 34-86 (144)
192 3t8r_A Staphylococcus aureus C 73.3 2.6 9E-05 36.2 3.7 51 367-417 8-60 (143)
193 3qph_A TRMB, A global transcri 73.0 0.17 5.9E-06 50.6 -4.6 70 18-97 16-85 (342)
194 2vn2_A DNAD, chromosome replic 72.9 6 0.00021 33.1 5.9 31 35-65 52-82 (128)
195 2h09_A Transcriptional regulat 72.7 5.3 0.00018 34.2 5.7 48 18-65 38-85 (155)
196 3boq_A Transcriptional regulat 72.6 20 0.00069 30.3 9.5 47 20-66 47-94 (160)
197 3deu_A Transcriptional regulat 72.6 18 0.00063 31.2 9.3 46 20-65 53-99 (166)
198 2ia0_A Putative HTH-type trans 72.3 6.6 0.00022 34.7 6.3 49 20-68 17-65 (171)
199 3g3z_A NMB1585, transcriptiona 72.1 17 0.00057 30.3 8.7 48 369-417 30-77 (145)
200 2g9w_A Conserved hypothetical 72.0 32 0.0011 28.8 10.4 49 18-66 7-60 (138)
201 2dk5_A DNA-directed RNA polyme 71.6 6 0.0002 31.2 5.1 43 23-65 23-67 (91)
202 1uly_A Hypothetical protein PH 71.0 9.1 0.00031 34.5 7.0 50 17-67 17-66 (192)
203 3fm5_A Transcriptional regulat 71.0 17 0.00057 30.6 8.5 47 20-66 39-86 (150)
204 3lwf_A LIN1550 protein, putati 70.9 4.1 0.00014 35.7 4.5 51 368-418 25-77 (159)
205 3t8r_A Staphylococcus aureus C 70.8 7.1 0.00024 33.4 5.9 47 19-65 10-59 (143)
206 1sd4_A Penicillinase repressor 70.8 36 0.0012 27.5 10.3 49 370-419 10-62 (126)
207 3eyy_A Putative iron uptake re 70.6 6.4 0.00022 33.8 5.6 54 111-167 19-72 (145)
208 1y0u_A Arsenical resistance op 70.6 7.3 0.00025 30.5 5.6 46 369-417 30-75 (96)
209 2kko_A Possible transcriptiona 70.4 12 0.00042 30.0 7.1 48 369-418 24-71 (108)
210 3k69_A Putative transcription 70.4 5.8 0.0002 34.8 5.4 50 369-418 11-61 (162)
211 2e1c_A Putative HTH-type trans 70.3 6.2 0.00021 34.9 5.6 51 18-68 25-75 (171)
212 2pn6_A ST1022, 150AA long hypo 70.2 3.1 0.00011 35.7 3.5 43 373-416 6-48 (150)
213 3jw4_A Transcriptional regulat 70.0 8.4 0.00029 32.4 6.3 47 20-66 41-89 (148)
214 3f3x_A Transcriptional regulat 69.9 34 0.0012 28.3 10.2 48 19-67 36-83 (144)
215 1u2w_A CADC repressor, cadmium 69.9 13 0.00043 30.7 7.2 48 370-418 42-89 (122)
216 2wte_A CSA3; antiviral protein 68.8 6.7 0.00023 36.9 5.8 49 18-66 150-198 (244)
217 3hsr_A HTH-type transcriptiona 68.6 4 0.00014 34.3 3.8 53 368-421 34-86 (140)
218 2qlz_A Transcription factor PF 68.6 5.8 0.0002 37.1 5.2 44 22-65 166-209 (232)
219 2jt1_A PEFI protein; solution 68.4 4.8 0.00016 30.7 3.8 44 374-417 8-56 (77)
220 2pex_A Transcriptional regulat 67.9 6.3 0.00022 33.4 5.1 48 370-418 47-94 (153)
221 2z99_A Putative uncharacterize 67.2 48 0.0016 30.5 11.0 122 21-167 16-145 (219)
222 3jw4_A Transcriptional regulat 67.1 7.5 0.00026 32.8 5.3 51 368-419 39-91 (148)
223 3u2r_A Regulatory protein MARR 66.8 15 0.00052 31.6 7.5 48 20-67 46-95 (168)
224 3jth_A Transcription activator 66.7 14 0.00047 28.9 6.5 48 369-418 22-69 (98)
225 2xrn_A HTH-type transcriptiona 66.7 27 0.00092 32.4 9.6 42 24-65 10-52 (241)
226 1ylf_A RRF2 family protein; st 65.7 4 0.00014 35.2 3.3 49 369-417 13-62 (149)
227 1tbx_A ORF F-93, hypothetical 65.2 6.5 0.00022 30.8 4.2 79 370-458 8-90 (99)
228 3lwf_A LIN1550 protein, putati 65.0 12 0.0004 32.7 6.2 44 22-65 29-75 (159)
229 2pg4_A Uncharacterized protein 64.9 6.7 0.00023 30.6 4.2 43 373-416 18-62 (95)
230 3tgn_A ADC operon repressor AD 64.8 4.3 0.00015 34.1 3.3 45 373-419 41-85 (146)
231 3mq0_A Transcriptional repress 64.7 5.9 0.0002 38.0 4.6 46 371-416 31-76 (275)
232 2wte_A CSA3; antiviral protein 64.6 5.3 0.00018 37.7 4.1 50 368-418 150-199 (244)
233 2jsc_A Transcriptional regulat 64.6 21 0.00073 29.0 7.5 60 370-438 21-80 (118)
234 3f6o_A Probable transcriptiona 64.0 25 0.00086 28.5 7.8 63 368-439 16-78 (118)
235 1mkm_A ICLR transcriptional re 63.9 8.9 0.0003 36.0 5.6 43 24-66 12-55 (249)
236 3nrv_A Putative transcriptiona 63.6 4.6 0.00016 34.0 3.3 53 369-422 39-91 (148)
237 3tdu_C Cullin-1, CUL-1; E2:E3, 63.1 13 0.00043 28.4 5.2 57 111-167 11-67 (77)
238 4aik_A Transcriptional regulat 62.9 57 0.002 27.5 10.3 63 371-436 32-94 (151)
239 2fe3_A Peroxide operon regulat 62.7 17 0.00059 30.9 6.8 55 111-168 22-77 (145)
240 2z99_A Putative uncharacterize 62.7 88 0.003 28.7 11.8 80 347-438 81-160 (219)
241 2xrn_A HTH-type transcriptiona 62.6 5.5 0.00019 37.3 3.9 88 371-468 7-97 (241)
242 1r7j_A Conserved hypothetical 62.5 54 0.0018 25.6 10.7 71 20-106 8-78 (95)
243 3cuq_B Vacuolar protein-sortin 62.5 21 0.00073 32.9 7.7 48 19-66 153-200 (218)
244 3pqk_A Biofilm growth-associat 62.2 25 0.00084 27.6 7.3 55 362-418 15-69 (102)
245 2hzt_A Putative HTH-type trans 62.0 26 0.00089 27.9 7.4 50 368-419 11-62 (107)
246 2v79_A DNA replication protein 62.0 19 0.00066 30.4 6.9 58 384-445 50-107 (135)
247 2fe3_A Peroxide operon regulat 61.9 22 0.00075 30.2 7.3 50 19-68 21-76 (145)
248 1mzb_A Ferric uptake regulatio 61.4 12 0.00042 31.5 5.5 54 111-167 18-73 (136)
249 1okr_A MECI, methicillin resis 61.3 36 0.0012 27.4 8.4 48 370-418 10-61 (123)
250 2fbk_A Transcriptional regulat 61.1 12 0.00041 32.8 5.7 50 368-418 67-119 (181)
251 1t6s_A Conserved hypothetical 60.8 63 0.0021 28.2 10.1 119 20-167 7-139 (162)
252 1mkm_A ICLR transcriptional re 60.8 7.2 0.00025 36.6 4.3 46 371-417 9-55 (249)
253 2lkp_A Transcriptional regulat 60.1 20 0.00069 28.9 6.5 48 369-418 31-78 (119)
254 2xig_A Ferric uptake regulatio 59.7 15 0.00052 31.5 5.9 54 111-167 27-81 (150)
255 3f8b_A Transcriptional regulat 59.5 59 0.002 26.3 9.3 67 19-91 11-85 (116)
256 2k4b_A Transcriptional regulat 59.5 17 0.0006 28.9 5.8 46 20-65 35-84 (99)
257 3mq0_A Transcriptional repress 59.1 6.7 0.00023 37.6 3.8 42 24-65 34-76 (275)
258 1bja_A Transcription regulator 58.3 15 0.00052 29.1 5.1 46 20-65 16-62 (95)
259 3mwm_A ZUR, putative metal upt 58.0 12 0.00039 31.9 4.8 52 113-167 16-68 (139)
260 2p4w_A Transcriptional regulat 57.9 22 0.00077 32.2 7.0 51 369-421 14-64 (202)
261 4ets_A Ferric uptake regulatio 57.9 15 0.00053 32.0 5.7 54 111-167 33-89 (162)
262 3r4k_A Transcriptional regulat 57.6 6.7 0.00023 37.2 3.5 41 25-65 11-52 (260)
263 1sfu_A 34L protein; protein/Z- 57.3 9.7 0.00033 28.9 3.6 34 32-65 27-60 (75)
264 1xd7_A YWNA; structural genomi 57.3 9.7 0.00033 32.5 4.2 50 367-417 6-55 (145)
265 2o03_A Probable zinc uptake re 57.3 15 0.00052 30.6 5.4 54 112-168 12-66 (131)
266 1z91_A Organic hydroperoxide r 57.1 7.2 0.00025 32.7 3.3 48 370-418 40-87 (147)
267 2x4h_A Hypothetical protein SS 56.4 81 0.0028 25.8 12.1 35 31-65 28-62 (139)
268 2lnb_A Z-DNA-binding protein 1 56.4 30 0.001 26.3 6.1 47 19-65 18-65 (80)
269 1on2_A Transcriptional regulat 56.2 10 0.00035 31.8 4.2 43 375-418 13-55 (142)
270 2g9w_A Conserved hypothetical 56.1 18 0.0006 30.4 5.6 55 109-167 7-62 (138)
271 1ucr_A Protein DSVD; dissimila 56.1 21 0.00071 27.1 5.2 48 23-70 6-58 (78)
272 2fxa_A Protease production reg 56.0 17 0.00059 32.9 5.9 61 369-433 47-107 (207)
273 3f6v_A Possible transcriptiona 55.6 21 0.00072 30.7 6.1 60 370-438 58-117 (151)
274 2p5k_A Arginine repressor; DNA 55.5 34 0.0012 24.0 6.4 38 25-65 10-52 (64)
275 2o03_A Probable zinc uptake re 55.5 27 0.00092 29.1 6.6 47 23-69 14-66 (131)
276 4esf_A PADR-like transcription 54.6 35 0.0012 27.9 7.0 67 19-91 10-82 (117)
277 3o2p_E Cell division control p 54.6 39 0.0013 26.3 6.8 57 111-167 23-79 (88)
278 2fsw_A PG_0823 protein; alpha- 54.5 37 0.0013 26.9 7.1 50 369-420 24-74 (107)
279 2qvo_A Uncharacterized protein 54.4 18 0.00061 28.1 5.0 46 19-64 11-60 (95)
280 1mzb_A Ferric uptake regulatio 54.3 34 0.0012 28.6 7.1 49 20-68 18-73 (136)
281 2w57_A Ferric uptake regulatio 54.3 13 0.00046 31.9 4.6 54 111-167 17-72 (150)
282 3eyy_A Putative iron uptake re 54.2 25 0.00087 29.9 6.4 47 23-69 22-73 (145)
283 3hhh_A Transcriptional regulat 53.4 79 0.0027 25.6 9.1 67 19-91 12-84 (116)
284 1r1t_A Transcriptional repress 53.1 25 0.00086 28.9 6.0 61 370-439 46-106 (122)
285 1uly_A Hypothetical protein PH 52.2 15 0.00051 33.1 4.7 49 368-418 18-66 (192)
286 2fbk_A Transcriptional regulat 52.2 45 0.0015 29.0 8.0 48 20-67 69-119 (181)
287 2xig_A Ferric uptake regulatio 51.2 36 0.0012 29.1 6.9 48 22-69 29-82 (150)
288 1yg2_A Gene activator APHA; vi 50.7 21 0.00071 31.5 5.4 61 25-91 7-75 (179)
289 1ylf_A RRF2 family protein; st 50.4 20 0.00067 30.7 5.0 43 23-65 17-61 (149)
290 3neu_A LIN1836 protein; struct 50.0 59 0.002 26.7 7.9 32 34-65 36-68 (125)
291 3nqo_A MARR-family transcripti 50.0 60 0.002 28.5 8.5 62 368-433 39-102 (189)
292 2v79_A DNA replication protein 49.5 31 0.0011 29.1 6.1 34 33-66 50-83 (135)
293 3dv8_A Transcriptional regulat 49.0 28 0.00095 30.9 6.2 55 11-65 138-200 (220)
294 4esb_A Transcriptional regulat 49.0 34 0.0012 27.8 6.1 67 19-91 8-80 (115)
295 2b0l_A GTP-sensing transcripti 48.7 6.6 0.00023 31.6 1.6 44 22-65 30-74 (102)
296 1xd7_A YWNA; structural genomi 48.4 37 0.0012 28.8 6.5 46 19-65 8-54 (145)
297 1bja_A Transcription regulator 48.2 35 0.0012 27.0 5.7 49 108-164 11-62 (95)
298 2nr3_A Hypothetical protein; A 48.1 26 0.00087 31.0 5.2 49 17-65 105-158 (183)
299 2o0y_A Transcriptional regulat 47.8 11 0.00036 35.7 3.1 45 21-65 21-69 (260)
300 1iuy_A Cullin-3 homologue; win 47.6 35 0.0012 26.8 5.6 55 113-167 28-82 (92)
301 2obp_A Putative DNA-binding pr 47.3 31 0.0011 27.4 5.3 34 33-66 35-68 (96)
302 2g7u_A Transcriptional regulat 47.3 13 0.00044 35.0 3.6 35 32-66 27-61 (257)
303 3bz6_A UPF0502 protein pspto_2 46.6 31 0.001 30.5 5.5 49 17-65 105-158 (183)
304 1lva_A Selenocysteine-specific 46.3 1.9E+02 0.0063 26.9 12.4 106 21-166 142-249 (258)
305 2g7u_A Transcriptional regulat 46.0 8.3 0.00028 36.4 2.0 86 371-468 15-105 (257)
306 1z7u_A Hypothetical protein EF 45.8 1.1E+02 0.0038 24.2 11.2 51 368-420 19-71 (112)
307 2ia2_A Putative transcriptiona 45.7 11 0.00038 35.7 2.9 45 21-65 19-67 (265)
308 3r4k_A Transcriptional regulat 45.2 5.7 0.0002 37.6 0.8 89 371-467 7-98 (260)
309 3nw0_B Melanoma-associated ant 44.7 11 0.00037 34.9 2.5 33 401-434 141-174 (217)
310 3elk_A Putative transcriptiona 44.5 31 0.001 28.3 5.1 68 19-92 13-86 (117)
311 3mwm_A ZUR, putative metal upt 44.2 44 0.0015 28.1 6.2 46 24-69 18-69 (139)
312 3b02_A Transcriptional regulat 44.0 41 0.0014 29.3 6.4 58 8-65 99-170 (195)
313 2w57_A Ferric uptake regulatio 43.9 38 0.0013 28.9 5.9 46 23-68 20-72 (150)
314 2x4h_A Hypothetical protein SS 43.8 22 0.00075 29.5 4.2 35 382-417 29-63 (139)
315 2gqq_A Leucine-responsive regu 43.4 11 0.00037 32.8 2.2 49 368-417 11-59 (163)
316 3ryp_A Catabolite gene activat 43.3 42 0.0014 29.4 6.4 56 10-65 129-198 (210)
317 3k69_A Putative transcription 43.1 25 0.00085 30.7 4.6 43 23-65 15-59 (162)
318 4b8x_A SCO5413, possible MARR- 43.0 72 0.0025 26.7 7.5 42 25-66 40-83 (147)
319 1yyv_A Putative transcriptiona 43.0 1.4E+02 0.0048 24.6 10.6 48 371-420 36-84 (131)
320 2vn2_A DNAD, chromosome replic 43.0 17 0.00058 30.3 3.3 38 386-423 52-89 (128)
321 3tqn_A Transcriptional regulat 42.9 42 0.0015 27.0 5.7 30 36-65 35-64 (113)
322 4aik_A Transcriptional regulat 42.6 1.5E+02 0.0051 24.8 10.7 43 24-66 35-78 (151)
323 1ft9_A Carbon monoxide oxidati 42.4 65 0.0022 28.6 7.6 58 8-65 122-194 (222)
324 2gqq_A Leucine-responsive regu 42.3 5.3 0.00018 34.9 -0.0 51 18-68 11-61 (163)
325 3u1d_A Uncharacterized protein 42.3 48 0.0017 28.6 6.2 66 371-437 30-99 (151)
326 2o0y_A Transcriptional regulat 42.1 8.1 0.00028 36.6 1.3 87 371-468 24-115 (260)
327 1xma_A Predicted transcription 41.8 1.5E+02 0.0053 24.9 9.4 62 372-437 43-112 (145)
328 2ia2_A Putative transcriptiona 41.7 8.8 0.0003 36.4 1.5 85 372-468 23-112 (265)
329 3by6_A Predicted transcription 41.7 48 0.0017 27.3 6.0 30 36-65 37-66 (126)
330 2ek5_A Predicted transcription 41.0 26 0.00089 29.2 4.2 32 34-65 27-59 (129)
331 1xma_A Predicted transcription 40.8 1.3E+02 0.0043 25.5 8.7 66 20-91 41-114 (145)
332 1p4x_A Staphylococcal accessor 40.6 93 0.0032 29.0 8.5 82 373-462 37-121 (250)
333 2qvo_A Uncharacterized protein 40.5 16 0.00055 28.4 2.6 45 370-415 12-60 (95)
334 2yu3_A DNA-directed RNA polyme 39.7 34 0.0012 27.1 4.4 47 23-69 40-88 (95)
335 3e97_A Transcriptional regulat 39.3 47 0.0016 29.7 6.1 49 17-65 143-206 (231)
336 1v4r_A Transcriptional repress 39.3 5.1 0.00017 31.9 -0.6 32 34-65 34-66 (102)
337 3eyi_A Z-DNA-binding protein 1 38.5 32 0.0011 25.5 3.6 44 22-65 12-56 (72)
338 4ev0_A Transcription regulator 37.7 58 0.002 28.6 6.4 57 9-65 130-194 (216)
339 2f2e_A PA1607; transcription f 37.5 56 0.0019 27.6 5.9 45 372-418 26-70 (146)
340 2hoe_A N-acetylglucosamine kin 37.1 25 0.00087 34.9 4.2 44 374-419 24-67 (380)
341 4ham_A LMO2241 protein; struct 37.1 28 0.00097 29.0 3.9 32 34-65 37-69 (134)
342 1u5t_A Appears to BE functiona 37.1 45 0.0015 31.0 5.5 48 19-66 166-213 (233)
343 2fmy_A COOA, carbon monoxide o 36.8 63 0.0022 28.6 6.5 58 8-65 126-198 (220)
344 3iwz_A CAP-like, catabolite ac 36.8 84 0.0029 27.8 7.4 58 8-65 147-218 (230)
345 2dql_A PEX protein; circadian 36.7 1.3E+02 0.0044 24.3 7.7 59 29-91 30-95 (115)
346 3k2z_A LEXA repressor; winged 36.4 50 0.0017 29.4 5.7 43 23-65 12-55 (196)
347 2zcw_A TTHA1359, transcription 36.4 90 0.0031 27.2 7.4 58 8-65 106-177 (202)
348 3l7w_A Putative uncharacterize 36.3 1.6E+02 0.0054 23.2 8.3 64 21-91 10-77 (108)
349 3e6c_C CPRK, cyclic nucleotide 36.0 90 0.0031 28.3 7.6 57 9-65 137-208 (250)
350 1qzz_A RDMB, aclacinomycin-10- 36.0 38 0.0013 33.2 5.2 52 13-65 20-80 (374)
351 2r3s_A Uncharacterized protein 35.9 68 0.0023 30.7 7.0 40 25-65 31-70 (335)
352 3dv8_A Transcriptional regulat 35.8 1E+02 0.0034 27.1 7.7 34 384-418 169-202 (220)
353 1z6r_A MLC protein; transcript 35.8 24 0.00082 35.4 3.7 44 373-417 19-62 (406)
354 2gau_A Transcriptional regulat 35.5 86 0.0029 27.9 7.3 57 9-65 141-211 (232)
355 1tw3_A COMT, carminomycin 4-O- 35.4 39 0.0013 33.0 5.2 40 25-65 44-83 (360)
356 3la7_A Global nitrogen regulat 35.2 80 0.0027 28.6 7.1 54 12-65 156-224 (243)
357 2pjp_A Selenocysteine-specific 34.9 1.8E+02 0.0061 23.5 8.8 105 22-166 9-113 (121)
358 2qc0_A Uncharacterized protein 34.9 41 0.0014 33.6 5.2 54 362-416 288-342 (373)
359 3cuq_A Vacuolar-sorting protei 34.8 55 0.0019 30.4 5.6 46 20-65 154-199 (234)
360 3k2z_A LEXA repressor; winged 34.7 30 0.001 30.9 3.8 41 378-418 17-57 (196)
361 2ip2_A Probable phenazine-spec 34.6 43 0.0015 32.2 5.3 40 25-65 33-72 (334)
362 2l0k_A Stage III sporulation p 34.1 45 0.0016 26.2 4.3 34 21-55 8-41 (93)
363 1j1v_A Chromosomal replication 34.0 1.1E+02 0.0038 23.8 6.7 49 9-57 5-70 (94)
364 3df8_A Possible HXLR family tr 34.0 37 0.0013 27.3 3.9 47 370-418 27-76 (111)
365 4a5n_A Uncharacterized HTH-typ 33.6 1.2E+02 0.0042 25.1 7.3 53 367-421 22-76 (131)
366 2do7_A Cullin-4B, CUL-4B; heli 33.6 76 0.0026 25.3 5.6 54 112-167 32-85 (101)
367 2zkz_A Transcriptional repress 33.6 81 0.0028 24.5 5.9 62 370-440 27-88 (99)
368 1z05_A Transcriptional regulat 33.5 30 0.001 35.1 4.0 45 373-418 42-86 (429)
369 1x19_A CRTF-related protein; m 33.4 66 0.0023 31.4 6.5 40 25-65 56-95 (359)
370 3d0s_A Transcriptional regulat 33.4 89 0.003 27.7 7.0 56 10-65 138-208 (227)
371 3hrs_A Metalloregulator SCAR; 33.4 40 0.0014 30.6 4.6 42 25-66 11-52 (214)
372 1w7p_D VPS36P, YLR417W; ESCRT- 32.4 54 0.0019 34.6 5.8 48 18-65 492-546 (566)
373 3iwz_A CAP-like, catabolite ac 32.4 1.5E+02 0.0051 26.1 8.4 54 364-418 153-220 (230)
374 3eqx_A FIC domain containing t 32.4 54 0.0019 32.7 5.6 53 363-416 289-342 (373)
375 2gau_A Transcriptional regulat 32.3 1.6E+02 0.0056 25.9 8.7 32 387-418 182-213 (232)
376 2oz6_A Virulence factor regula 32.3 93 0.0032 27.0 6.8 53 13-65 129-195 (207)
377 4ets_A Ferric uptake regulatio 32.2 86 0.0029 27.1 6.3 46 23-68 36-89 (162)
378 1r7j_A Conserved hypothetical 32.1 36 0.0012 26.7 3.4 42 374-418 12-53 (95)
379 3ryp_A Catabolite gene activat 31.5 1.4E+02 0.0048 25.8 7.9 51 367-418 136-200 (210)
380 3g2b_A Coenzyme PQQ synthesis 31.2 49 0.0017 26.0 4.1 54 109-164 41-94 (95)
381 2lky_A Uncharacterized protein 31.2 76 0.0026 25.8 5.2 53 106-163 39-94 (112)
382 3htu_A Vacuolar protein-sortin 30.4 1.5E+02 0.0051 22.5 6.4 51 20-70 9-71 (79)
383 3la7_A Global nitrogen regulat 30.3 1.7E+02 0.0057 26.3 8.4 32 387-418 195-226 (243)
384 4a6d_A Hydroxyindole O-methylt 30.1 1.2E+02 0.0041 29.5 7.8 44 25-68 33-77 (353)
385 3ri2_A Transcriptional regulat 30.1 1.9E+02 0.0065 23.6 7.8 66 19-92 20-90 (123)
386 1j5y_A Transcriptional regulat 30.0 65 0.0022 28.4 5.3 45 21-65 22-68 (187)
387 3b02_A Transcriptional regulat 30.0 1.4E+02 0.0046 25.8 7.5 51 367-418 108-172 (195)
388 1hsj_A Fusion protein consisti 30.0 31 0.0011 35.3 3.5 63 371-437 405-469 (487)
389 3k4g_A DNA-directed RNA polyme 29.9 72 0.0025 24.7 4.7 46 20-65 18-71 (86)
390 3f8b_A Transcriptional regulat 29.9 1.5E+02 0.005 23.9 7.0 52 115-166 15-66 (116)
391 2obp_A Putative DNA-binding pr 29.8 60 0.002 25.7 4.3 34 383-417 35-68 (96)
392 3l09_A Putative transcriptiona 29.6 1.2E+02 0.004 28.7 7.2 53 29-91 36-92 (266)
393 4ev0_A Transcription regulator 29.5 1E+02 0.0035 26.9 6.6 32 387-418 165-196 (216)
394 4ham_A LMO2241 protein; struct 29.5 65 0.0022 26.7 4.9 34 385-418 38-71 (134)
395 3ihu_A Transcriptional regulat 29.2 41 0.0014 30.5 3.9 32 34-65 39-70 (222)
396 3i53_A O-methyltransferase; CO 28.9 61 0.0021 31.2 5.3 40 25-65 30-69 (332)
397 2esh_A Conserved hypothetical 28.6 98 0.0033 24.9 5.7 64 21-91 14-86 (118)
398 2zcw_A TTHA1359, transcription 28.4 2E+02 0.0069 24.7 8.4 53 365-418 113-179 (202)
399 3dkw_A DNR protein; CRP-FNR, H 28.3 1.4E+02 0.0047 26.3 7.3 54 12-65 144-209 (227)
400 3d0s_A Transcriptional regulat 28.1 2.1E+02 0.0071 25.1 8.6 31 387-417 179-209 (227)
401 3mzy_A RNA polymerase sigma-H 28.0 1.2E+02 0.0042 25.0 6.6 45 12-58 104-148 (164)
402 2bgc_A PRFA; bacterial infecti 27.8 2.2E+02 0.0074 25.4 8.7 33 386-418 170-203 (238)
403 3kcc_A Catabolite gene activat 27.6 95 0.0033 28.5 6.2 55 11-65 180-248 (260)
404 2kvc_A Putative uncharacterize 27.6 79 0.0027 25.4 4.6 63 99-163 30-92 (103)
405 3c7j_A Transcriptional regulat 27.6 47 0.0016 30.7 3.9 33 33-65 48-80 (237)
406 1hsj_A Fusion protein consisti 27.6 68 0.0023 32.7 5.6 42 24-65 408-451 (487)
407 2zfw_A PEX; five alpha-helices 27.2 1.4E+02 0.0048 25.4 6.6 60 28-91 51-117 (148)
408 2oz6_A Virulence factor regula 27.0 2.2E+02 0.0076 24.4 8.4 32 387-418 166-197 (207)
409 3dp7_A SAM-dependent methyltra 26.9 66 0.0023 31.5 5.2 57 9-65 15-81 (363)
410 3e6c_C CPRK, cyclic nucleotide 26.9 1.6E+02 0.0055 26.5 7.6 52 366-418 144-210 (250)
411 1yg2_A Gene activator APHA; vi 26.8 1.1E+02 0.0038 26.7 6.1 52 116-167 6-57 (179)
412 3e97_A Transcriptional regulat 26.8 62 0.0021 28.9 4.6 32 387-418 177-208 (231)
413 3hrs_A Metalloregulator SCAR; 26.4 29 0.001 31.6 2.3 43 375-418 11-53 (214)
414 2v7f_A RPS19, RPS19E SSU ribos 26.4 65 0.0022 27.7 4.3 47 19-65 52-112 (150)
415 3tqn_A Transcriptional regulat 26.2 85 0.0029 25.1 4.9 31 387-417 35-65 (113)
416 1j5y_A Transcriptional regulat 26.2 57 0.0019 28.8 4.1 44 373-416 24-68 (187)
417 1i2t_A HYD protein; four alpha 25.7 37 0.0013 24.5 2.2 51 12-62 11-61 (61)
418 2wa0_A Melanoma-associated ant 25.7 32 0.0011 32.2 2.4 34 400-434 164-198 (240)
419 2ek5_A Predicted transcription 25.6 81 0.0028 26.1 4.7 31 387-417 30-60 (129)
420 4fx0_A Probable transcriptiona 25.5 88 0.003 26.2 5.1 41 25-65 38-83 (148)
421 4b8x_A SCO5413, possible MARR- 25.2 84 0.0029 26.2 4.9 64 367-434 30-97 (147)
422 2v9v_A Selenocysteine-specific 25.2 1.1E+02 0.0038 24.9 5.6 50 19-68 1-51 (135)
423 3f8m_A GNTR-family protein tra 25.0 70 0.0024 29.7 4.7 33 33-65 34-67 (248)
424 1z3e_B DNA-directed RNA polyme 24.6 96 0.0033 23.1 4.4 45 20-64 15-67 (73)
425 3elk_A Putative transcriptiona 24.6 1.1E+02 0.0039 24.7 5.4 38 397-436 45-82 (117)
426 1zyb_A Transcription regulator 24.0 94 0.0032 27.8 5.3 50 16-65 159-217 (232)
427 3by6_A Predicted transcription 24.0 2.4E+02 0.0082 22.9 7.4 31 387-417 37-67 (126)
428 4g6q_A Putative uncharacterize 23.9 64 0.0022 28.4 4.0 66 20-91 23-89 (182)
429 3sxy_A Transcriptional regulat 23.9 43 0.0015 30.3 2.9 32 34-65 35-66 (218)
430 1ft9_A Carbon monoxide oxidati 23.9 2E+02 0.0069 25.2 7.6 31 387-417 165-195 (222)
431 2p8t_A Hypothetical protein PH 23.6 90 0.0031 28.2 4.9 35 32-66 28-62 (200)
432 2b0l_A GTP-sensing transcripti 23.4 1.1E+02 0.0038 24.1 4.9 33 385-417 43-75 (102)
433 2hs5_A Putative transcriptiona 23.2 1.5E+02 0.0053 27.0 6.7 34 384-418 51-84 (239)
434 4esb_A Transcriptional regulat 23.2 1.4E+02 0.0049 23.9 5.7 38 397-436 40-77 (115)
435 1o5l_A Transcriptional regulat 22.9 31 0.0011 30.7 1.7 56 10-65 132-195 (213)
436 2w48_A Sorbitol operon regulat 22.8 95 0.0032 29.8 5.3 40 26-65 13-52 (315)
437 3l7w_A Putative uncharacterize 22.8 1.2E+02 0.0042 23.9 5.2 48 116-167 13-60 (108)
438 1tc3_C Protein (TC3 transposas 22.8 1.5E+02 0.0051 18.6 4.9 26 29-55 17-42 (51)
439 2v7f_A RPS19, RPS19E SSU ribos 22.8 1.3E+02 0.0045 25.7 5.6 57 111-167 53-115 (150)
440 2e1n_A PEX, period extender; c 22.7 2.2E+02 0.0075 23.8 7.0 59 29-91 42-107 (138)
441 2esh_A Conserved hypothetical 22.4 3E+02 0.01 21.9 10.6 38 397-437 46-84 (118)
442 3mzy_A RNA polymerase sigma-H 22.4 1.9E+02 0.0065 23.7 6.7 51 357-410 99-149 (164)
443 1hw1_A FADR, fatty acid metabo 22.0 67 0.0023 29.2 3.9 32 34-65 30-62 (239)
444 3fx3_A Cyclic nucleotide-bindi 21.8 1.7E+02 0.0058 26.0 6.6 55 9-63 142-207 (237)
445 2qen_A Walker-type ATPase; unk 21.8 2.5E+02 0.0085 26.4 8.3 46 19-65 281-331 (350)
446 3eqx_A FIC domain containing t 21.8 1.4E+02 0.0048 29.7 6.4 44 22-65 299-342 (373)
447 3gfk_B DNA-directed RNA polyme 21.7 70 0.0024 24.4 3.1 45 20-64 22-74 (79)
448 2dql_A PEX protein; circadian 21.6 1.8E+02 0.006 23.4 6.0 54 112-166 22-75 (115)
449 2o0m_A Transcriptional regulat 21.1 20 0.00069 35.3 0.0 44 373-417 23-66 (345)
450 3l9f_A Putative uncharacterize 21.1 73 0.0025 28.8 3.8 58 29-91 44-109 (204)
451 1bia_A BIRA bifunctional prote 20.7 1E+02 0.0035 29.8 5.1 45 22-66 7-51 (321)
452 3sxy_A Transcriptional regulat 20.7 1E+02 0.0036 27.6 4.9 36 383-418 33-68 (218)
453 3ulq_B Transcriptional regulat 20.7 87 0.003 24.1 3.7 38 372-412 34-71 (90)
454 2bgc_A PRFA; bacterial infecti 20.5 2.4E+02 0.0083 25.0 7.5 57 9-65 128-201 (238)
455 3edp_A LIN2111 protein; APC883 20.5 83 0.0028 28.9 4.2 32 34-65 32-64 (236)
456 1jko_C HIN recombinase, DNA-in 20.4 1.3E+02 0.0043 19.3 4.1 30 24-55 13-42 (52)
457 1u5t_B Defective in vacuolar p 20.3 76 0.0026 27.8 3.6 46 20-65 99-151 (169)
458 4fx0_A Probable transcriptiona 20.2 1.4E+02 0.0049 24.8 5.3 43 373-416 36-83 (148)
459 2hs5_A Putative transcriptiona 20.1 77 0.0026 29.1 3.9 32 34-65 51-82 (239)
460 1stz_A Heat-inducible transcri 20.1 1.3E+02 0.0046 29.3 5.8 38 28-65 30-69 (338)
461 2fmy_A COOA, carbon monoxide o 20.0 2E+02 0.0067 25.2 6.6 33 384-417 167-199 (220)
No 1
>2xub_A DNA-directed RNA polymerase III subunit RPC3; transcription, winged helix; 2.80A {Homo sapiens} PDB: 2xv4_S
Probab=100.00 E-value=8e-89 Score=733.50 Aligned_cols=474 Identities=21% Similarity=0.387 Sum_probs=362.8
Q ss_pred ccHHHHHHHHHHHHhhhchhHHHHHHHHHhcCCCcHHHHHHhcCCCHHHHHHHHHHHHhccccceecccCCCCCCCCCCC
Q 010353 2 LTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQPDGFADGPKA 81 (512)
Q Consensus 2 ~s~~~~~Lc~~iv~~~FG~~v~~V~~~Ll~~G~ltl~~I~~~t~l~~~~Vr~aL~vLIQhn~V~~~~~~~~~~~~~~~~~ 81 (512)
||+++++||+.||++||||+|++||++|+++|++||++|++.|++++++||+||++|||||||.|+..+. |
T Consensus 1 Ms~~~~~L~~~li~~~FG~~~~~V~~~Ll~~G~ltL~~I~~~t~L~~~~Vk~~L~vLIQh~lV~~~~~~~--~------- 71 (534)
T 2xub_A 1 MTQAEIKLCSLLLQEHFGEIVEKIGVHLIRTGSQPLRVIAHDTGTSLDQVKKALCVLVQHNLVSYQVHKR--G------- 71 (534)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEETT--T-------
T ss_pred CCHHHHHHHHHHHHHhcChHHHHHHHHHHhcCCcCHHHHHHHhCCCHHHHHHHHHHHHhcCCeeEEeCCC--C-------
Confidence 7999999999999999999999999999999999999999999999999999999999999998765431 1
Q ss_pred ccEEEechhhHHHHhchhhHHHHHHHHhhhhHHHHHHHHHHcccCCHHHHHHHHhhccc----CCCccCHHHHHHHHHHH
Q 010353 82 NTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTLKQMFDRAKSSEK----EGNLVDLDSLRETLVKL 157 (512)
Q Consensus 82 ~~~Y~~~~~~il~rlR~pr~l~~i~~~~G~~a~~Iv~~lL~~G~l~~~~li~~~~~~~~----~~~~~~~~~l~~~f~~L 157 (512)
.++|++|+++||+|+|||+||.+|+++||++|+.|+++||.+|++|+++++..+.++.+ +++..+...++++|.+|
T Consensus 72 ~~~Y~~~~~~il~~lR~pk~l~~i~~~~G~~a~~I~~~ll~~G~~t~~~ll~~~~~~~~~~~~~~~~~~~~~l~~~f~~L 151 (534)
T 2xub_A 72 VVEYEAQCSRVLRMLRYPRYIYTTKTLYSDTGELIVEELLLNGKLTMSAVVKKVADRLTETMEDGKTMDYAEVSNTFVRL 151 (534)
T ss_dssp EEEEEECHHHHHGGGGHHHHHHHHHHHHHHHHHHHHHHHHHHCCBCHHHHHHHHHHHHHHTSSSSCCCCHHHHHHHHHHH
T ss_pred cEEEEEChhhHHHHHhhHHHHHHHHHHhcHHHHHHHHHHHHcCCccHHHHHHHHHhhcccccccccccCHHHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999876532 22334788999999999
Q ss_pred HhcccccccCCCCCCCCCCCccCCcccccCCCCCcccCCchhhHHHHHHhhCchhhhhhhhhc-ccccccccccc-CCCC
Q 010353 158 VTAHYVERCPASEPLLMPISEEEGPARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVT-NVESDVGEKEK-NSNN 235 (512)
Q Consensus 158 v~~~fi~rv~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~a~~~~~~r~~~~~-~~~~~~~~~~~-~~~~ 235 (512)
+++|||+|||+..+... ++... ..|.+. +.. .+.+.|..|. +.....+++.. .+..
T Consensus 152 v~~~fI~rv~~~~~~~~--~~~~~---~~~~~~---~~~--------------~~~~~~~~p~~~~~~~~k~~~~~~~~~ 209 (534)
T 2xub_A 152 ADTHFVQRCPSVPTTEN--SDPGP---PPPAPT---LVI--------------NEKDMYLVPKLSLIGKGKRRRSSDEDA 209 (534)
T ss_dssp HHTTSEEECCCC--------------------------------------------------------------------
T ss_pred HhCCCEEeCCCCCcccc--ccccc---ccCCch---hhh--------------cchhhhccchhhhHHHhhhccccCCcc
Confidence 99999999986432111 11110 011110 000 0011111111 00000111100 1111
Q ss_pred CCCCCcccCCcccccccCCCCCCccEEEecHHHHHHHHHHHHHHHHHHhhcChhHHHHHHHHHhccccccccccccCCCc
Q 010353 236 VTPGEKRKHDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQATSSAEKKVKTKNSVP 315 (512)
Q Consensus 236 ~~~~~Krk~~~~~~d~~~~~~~~~v~wrvN~~rf~~~lR~~~iv~~v~~r~g~~a~~v~~~~L~~~~~~~~~~~~~~s~p 315 (512)
+.+++|++.+...+|+ +...+++++|||||++|+++|||++|+++|++|+|+.||.||++||++.+.++ ++|++.|.|
T Consensus 210 ~~~~~~k~~~~~~~~~-~~~~d~~~~wrvN~erf~~~lR~~~lv~~v~~r~~~~a~~V~~~lL~~~e~~~-~~~~~~s~~ 287 (534)
T 2xub_A 210 AGEPKAKRPKYTTDNK-EPIPDDGIYWQANLDRFHQHFRDQAIVSAVANRMDQTSSEIVRTMLRMSEITT-SSSAPFTQP 287 (534)
T ss_dssp ----------------------CTTSEEECHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTS-CTTCSBCCC
T ss_pred ccccccccccCCCccc-cccCCCCceEEeeHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhccC-CccccCCCc
Confidence 2233444443332222 34467899999999999999999999999999999999999999999988655 567788999
Q ss_pred cChHHHHHHhhhhhcCCCCcHHHHHHHHhhc---------------------CHHHHHHHHHHHHHHHHHHHHhCchHHH
Q 010353 316 LSLSSIYEEVIKSEAGRNMTLDHVRASLVQL---------------------DFEKIIEIAQNEEVESVVSKRYGRDAYR 374 (512)
Q Consensus 316 is~~~i~~~l~~~~~~~~~~~~~i~~~L~~l---------------------~~~~~~~~lr~~~le~~v~~~~G~~~~R 374 (512)
+++++|.+.+ +.+.+++.+.+++||..| ||+++++.||+.+++++|.++||..|+|
T Consensus 288 is~~~I~~~l---~~~~~l~~~~l~~~L~lL~~~~~~fv~~~g~~g~g~y~V~~~~~~~~lr~~~ie~ii~~~~G~~a~R 364 (534)
T 2xub_A 288 LSSNEIFRSL---PVGYNISKQVLDQYLTLLADDPLEFVGKSGDSGGGMYVINLHKALASLATATLESVVQERFGSRCAR 364 (534)
T ss_dssp EEHHHHHHTS---CTTCCCCHHHHHHHHHHHHSCTTCCEEECCCCSSCEEEEBHHHHHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred ccHHHHHHHc---CCcccccHHHHHHHHHHHhCCcHHhhhccccCCCceEEEeHHHHHHHHHHHHHHHHHHHHhChHHHH
Confidence 9999999999 346788899999999875 8999999999999999999999999999
Q ss_pred HHHHHHhcCCCcchhhhhhhcCCCcccHHHHHHHHhhcccceEEEEecCC--CCCceEEEEEEehHHHHHHHHHHHHHHH
Q 010353 375 IFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTG--ARQSQFLLWKVNRQILWKHVLDEMFHAA 452 (512)
Q Consensus 375 i~r~l~~~~~l~eek~i~~~ami~~k~~r~~Ly~L~~~g~v~~QEvpk~~--~~~~t~~lw~v~~~~~~~~~l~~~~k~~ 452 (512)
|||+|..+|++ ||++|++.+|||.||+|++||+|+++|||++||+||++ +|+|+||||++|.+++..++++++||++
T Consensus 365 I~r~L~~~~~l-~d~~ia~~a~i~~k~vR~~Ly~L~~~g~v~~qevp~~~d~~~~~~~ylW~~~~~~~~~~l~~~~~k~l 443 (534)
T 2xub_A 365 IFRLVLQKKHI-EQKQVEDFAMIPAKEAKDMLYKMLSENFMSLQEIPKTPDHAPSRTFYLYTVNILSAARMLLHRCYKSI 443 (534)
T ss_dssp HHHHHHHC----CHHHHHHHHCSCHHHHHHHHHHHHHTTCC---------------------CCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCC-CHHHHHHHhCCCHHHHHHHHHHHHHCCCeEEEEccCCCCCCCcceEEEEEEcHHHHHHHHHHHHHHHH
Confidence 99999999998 99999999999999999999999999999999999987 8999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhccccc-----------------------ccCChhHHHHHHHHHHHHHHHHHHHhhhhhhhhcc
Q 010353 453 LNLSLRVSYELDREKELLNLPA-----------------------DKRTGPLQDRYNRIRKVRILLESSQMKLDDAILLF 509 (512)
Q Consensus 453 ~nl~~R~~~e~~~~k~ll~k~~-----------------------~~~~~~e~~~l~~~~~~~~~L~~~~~rlD~~l~ll 509 (512)
.||++|+++|+++++.||+|.+ +..+|+|+++|++|++++++|+++++|||++||+|
T Consensus 444 ~nl~~Rl~~E~~~~~~lL~k~eR~d~~~~~vk~~~~~~~~~~e~~e~lt~~e~~~l~~~~~~~~~L~~~~~~lD~~i~vl 523 (534)
T 2xub_A 444 ANLIERRQFETKENKRLLEKSQRVEAIIASMQATGAEEAQLQEIEEMITAPERQQLETLKRNVNKLDASEIQVDETIFLL 523 (534)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHHHHHHCCC--------CHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHhhhhHHHHhhccccchhhhHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHH
Confidence 9999999999999999999943 35679999999999999999999999999999999
Q ss_pred ccC
Q 010353 510 HDF 512 (512)
Q Consensus 510 ~d~ 512 (512)
+||
T Consensus 524 ~dy 526 (534)
T 2xub_A 524 ESY 526 (534)
T ss_dssp HHH
T ss_pred HHH
Confidence 997
No 2
>2xub_A DNA-directed RNA polymerase III subunit RPC3; transcription, winged helix; 2.80A {Homo sapiens} PDB: 2xv4_S
Probab=99.14 E-value=2e-08 Score=107.88 Aligned_cols=216 Identities=16% Similarity=0.194 Sum_probs=140.9
Q ss_pred HHHHHHHhhhchhHHHHHHHHHhcCCCcHHHHHHhcC------------CCHHHHHHHHHHHHhccccceecccCCC---
Q 010353 9 HAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTE------------LSDEQVKNALLVLIQQNCVQAFTTEQPD--- 73 (512)
Q Consensus 9 Lc~~iv~~~FG~~v~~V~~~Ll~~G~ltl~~I~~~t~------------l~~~~Vr~aL~vLIQhn~V~~~~~~~~~--- 73 (512)
....+|++.||+.++.|+..|+.+|++|+.+|..... -++..++.++.-|+++|+|....+....
T Consensus 90 k~l~~i~~~~G~~a~~I~~~ll~~G~~t~~~ll~~~~~~~~~~~~~~~~~~~~~l~~~f~~Lv~~~fI~rv~~~~~~~~~ 169 (534)
T 2xub_A 90 RYIYTTKTLYSDTGELIVEELLLNGKLTMSAVVKKVADRLTETMEDGKTMDYAEVSNTFVRLADTHFVQRCPSVPTTENS 169 (534)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCBCHHHHHHHHHHHHHHTSSSSCCCCHHHHHHHHHHHHHTTSEEECCCC------
T ss_pred HHHHHHHHHhcHHHHHHHHHHHHcCCccHHHHHHHHHhhcccccccccccCHHHHHHHHHHHHhCCCEEeCCCCCccccc
Confidence 3578999999999999999999999999999976631 4678999999999999998843321100
Q ss_pred -------CC-----------------------------------------------CCCCCCccEEEechhhHHHHhchh
Q 010353 74 -------GF-----------------------------------------------ADGPKANTQYVVLFDNILHRVRFA 99 (512)
Q Consensus 74 -------~~-----------------------------------------------~~~~~~~~~Y~~~~~~il~rlR~p 99 (512)
.+ ..+.....+|.+|++.....+|--
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~k~~~~~~~~~~~~~~~k~~~~~~~~~~~~~d~~~~wrvN~erf~~~lR~~ 249 (534)
T 2xub_A 170 DPGPPPPAPTLVINEKDMYLVPKLSLIGKGKRRRSSDEDAAGEPKAKRPKYTTDNKEPIPDDGIYWQANLDRFHQHFRDQ 249 (534)
T ss_dssp -------------------------------------------------------------CTTSEEECHHHHHHHHHHH
T ss_pred ccccccCCchhhhcchhhhccchhhhHHHhhhccccCCccccccccccccCCCccccccCCCCceEEeeHHHHHHHHHHH
Confidence 00 000123468999999999999999
Q ss_pred hHHHHHHHHhhhhHHHHHHHHHHcccCCHHHHHHHHhhcccCCCccCHHHHHHHHHHHHhcccccccCCCCCCCCCCCcc
Q 010353 100 KFLTILSQEFDQQCVELVQGLLEHGRLTLKQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEE 179 (512)
Q Consensus 100 r~l~~i~~~~G~~a~~Iv~~lL~~G~l~~~~li~~~~~~~~~~~~~~~~~l~~~f~~Lv~~~fi~rv~~~~~~~~~~~~~ 179 (512)
.++.+|++++|..++.|++.+|.....+.+. ..+.+.+.+..+|.+. +|+ ... .
T Consensus 250 ~lv~~v~~r~~~~a~~V~~~lL~~~e~~~~~-------~~~~s~~is~~~I~~~------------l~~---~~~----l 303 (534)
T 2xub_A 250 AIVSAVANRMDQTSSEIVRTMLRMSEITTSS-------SAPFTQPLSSNEIFRS------------LPV---GYN----I 303 (534)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHTTTTTSCT-------TCSBCCCEEHHHHHHT------------SCT---TCC----C
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHhhccCCc-------cccCCCcccHHHHHHH------------cCC---ccc----c
Confidence 9999999999999999999999755433221 0011112233333222 111 000 0
Q ss_pred CCcccccCCCCCcccCCchhhHHHHHHhhCchhhhhhhhhccccccccccccCCCCCCCCCcccCCcccccccCCCCCCc
Q 010353 180 EGPARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGEKRKHDVLELDECGVADEQS 259 (512)
Q Consensus 180 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~a~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Krk~~~~~~d~~~~~~~~~ 259 (512)
.. ..+.+.. ..+.+++ .+.=++.+ +..+
T Consensus 304 -----------~~-----~~l~~~L------------~lL~~~~--------------~~fv~~~g----------~~g~ 331 (534)
T 2xub_A 304 -----------SK-----QVLDQYL------------TLLADDP--------------LEFVGKSG----------DSGG 331 (534)
T ss_dssp -----------CH-----HHHHHHH------------HHHHSCT--------------TCCEEECC----------CCSS
T ss_pred -----------cH-----HHHHHHH------------HHHhCCc--------------HHhhhccc----------cCCC
Confidence 00 0011100 0000000 00000000 0013
Q ss_pred cEEEecHHHHHHHHHHHHHHHHHHhhcChhHHHHHHHHHhccc
Q 010353 260 VVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQATS 302 (512)
Q Consensus 260 v~wrvN~~rf~~~lR~~~iv~~v~~r~g~~a~~v~~~~L~~~~ 302 (512)
-.|.|||.+....+|...+.+.+.++||+.+..|++.++....
T Consensus 332 g~y~V~~~~~~~~lr~~~ie~ii~~~~G~~a~RI~r~L~~~~~ 374 (534)
T 2xub_A 332 GMYVINLHKALASLATATLESVVQERFGSRCARIFRLVLQKKH 374 (534)
T ss_dssp CEEEEBHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHC--
T ss_pred ceEEEeHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHcCC
Confidence 4699999999999999999999999999999999999998754
No 3
>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41
Probab=98.23 E-value=1.7e-06 Score=72.52 Aligned_cols=103 Identities=19% Similarity=0.260 Sum_probs=69.5
Q ss_pred HHHHHHHHHhCchHHHHHHHHHhcC-CCcchhhhhhhcCCCcccHHHHHHHHhhcccceEEEEecCCCCCceEEEEEEeh
Q 010353 359 EVESVVSKRYGRDAYRIFRLLSKSG-RLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTGARQSQFLLWKVNR 437 (512)
Q Consensus 359 ~le~~v~~~~G~~~~Ri~r~l~~~~-~l~eek~i~~~ami~~k~~r~~Ly~L~~~g~v~~QEvpk~~~~~~t~~lw~v~~ 437 (512)
.+.+++...+|+...+|+..+...| .+ .+.+|++...++...+|+.|..|..+|+|.....+.. ..++.+|+|.++.
T Consensus 7 ~~~~~~~~~~~~~~l~Il~~l~~~g~~~-s~~eLa~~lgvs~~tV~~~L~~L~~~GlV~~~~~~~~-~~g~~v~~~~~~~ 84 (110)
T 1q1h_A 7 LFINLAKSLLGDDVIDVLRILLDKGTEM-TDEEIANQLNIKVNDVRKKLNLLEEQGFVSYRKTRDK-DSGWFIYYWKPNI 84 (110)
T ss_dssp HHHHHHHTTSCSTTHHHHHHHHHHCSCB-CHHHHHHTTTSCHHHHHHHHHHHHHHTSCEEEEEC----CCCCEEEEECTH
T ss_pred HHHHHHHHHcChHHHHHHHHHHHcCCCC-CHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEecccC-CCceEEEEeecCH
Confidence 4678889999999999999998888 66 9999999999999999999999999999987765322 2356788999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010353 438 QILWKHVLDEMFHAALNLSLRVSYEL 463 (512)
Q Consensus 438 ~~~~~~~l~~~~k~~~nl~~R~~~e~ 463 (512)
+.+...+...+.+.+.++..|+++|+
T Consensus 85 ~~i~~~~~~~~~~~~e~l~~~l~~e~ 110 (110)
T 1q1h_A 85 DQINEILLNRKRLILDKLKTRLEYEK 110 (110)
T ss_dssp HHHC----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 99989888899999999999998874
No 4
>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41
Probab=96.55 E-value=0.0065 Score=50.26 Aligned_cols=83 Identities=22% Similarity=0.220 Sum_probs=63.0
Q ss_pred HHHHHHHHhhhchhHHHHHHHHHhcC-CCcHHHHHHhcCCCHHHHHHHHHHHHhccccceecccCCCCCCCCCCCccEEE
Q 010353 8 KHAVHVITNHFGDLVAKVCECLLRKG-PLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQPDGFADGPKANTQYV 86 (512)
Q Consensus 8 ~Lc~~iv~~~FG~~v~~V~~~Ll~~G-~ltl~~I~~~t~l~~~~Vr~aL~vLIQhn~V~~~~~~~~~~~~~~~~~~~~Y~ 86 (512)
.....++...+|+..-+|...|+..| ++|..+|+..++++.+.|+.+|-.|...|+|.......+++ .....+|.
T Consensus 6 ~~~~~~~~~~~~~~~l~Il~~l~~~g~~~s~~eLa~~lgvs~~tV~~~L~~L~~~GlV~~~~~~~~~~----g~~v~~~~ 81 (110)
T 1q1h_A 6 DLFINLAKSLLGDDVIDVLRILLDKGTEMTDEEIANQLNIKVNDVRKKLNLLEEQGFVSYRKTRDKDS----GWFIYYWK 81 (110)
T ss_dssp THHHHHHHTTSCSTTHHHHHHHHHHCSCBCHHHHHHTTTSCHHHHHHHHHHHHHHTSCEEEEEC---C----CCCEEEEE
T ss_pred HHHHHHHHHHcChHHHHHHHHHHHcCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEecccCCC----ceEEEEee
Confidence 45567889999999999999999888 99999999999999999999999999999998442221111 11123347
Q ss_pred echhhHHH
Q 010353 87 VLFDNILH 94 (512)
Q Consensus 87 ~~~~~il~ 94 (512)
++.+.+..
T Consensus 82 ~~~~~i~~ 89 (110)
T 1q1h_A 82 PNIDQINE 89 (110)
T ss_dssp CTHHHHC-
T ss_pred cCHHHHHH
Confidence 77665543
No 5
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=96.25 E-value=0.032 Score=52.76 Aligned_cols=134 Identities=13% Similarity=0.161 Sum_probs=90.4
Q ss_pred hhHHHHHHHHHhcCCCcHHHHHHhcCCCHHHHHHHHHHHHhccccceecccCCCCCCCCCCCccEEEechhhHH------
Q 010353 20 DLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQPDGFADGPKANTQYVVLFDNIL------ 93 (512)
Q Consensus 20 ~~v~~V~~~Ll~~G~ltl~~I~~~t~l~~~~Vr~aL~vLIQhn~V~~~~~~~~~~~~~~~~~~~~Y~~~~~~il------ 93 (512)
+.-.+|...|. .|++|..+|++.++++++.|.+-|-.|.+.|+|....... . .+ +++..+|.++.+...
T Consensus 12 ~~R~~IL~~L~-~g~~s~~ELa~~lglS~stVs~hL~~Le~aGLV~~~~~~g-r-~~--GRp~~~Y~Lt~~~~~~~~l~~ 86 (232)
T 2qlz_A 12 KVRRDLLSHLT-CMECYFSLLSSKVSVSSTAVAKHLKIMEREGVLQSYEKEE-R-FI--GPTKKYYKISIAKSYVFTLTP 86 (232)
T ss_dssp HHHHHHHHHHT-TTTTCSSSSCTTCCCCHHHHHHHHHHHHHTTSEEEEEECC---------CEEEEEECCCEEEEEEEET
T ss_pred HHHHHHHHHHH-hCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEeeecC-C-CC--CCccEEEEEccchhhHHHHHH
Confidence 55566777776 6999999999999999999999999999999998433221 1 11 233467776543211
Q ss_pred ------------------------------------HHhc--------hhhHHHHHHHH---------------hh-hhH
Q 010353 94 ------------------------------------HRVR--------FAKFLTILSQE---------------FD-QQC 113 (512)
Q Consensus 94 ------------------------------------~rlR--------~pr~l~~i~~~---------------~G-~~a 113 (512)
..++ ++.|-..+... .| .+.
T Consensus 87 ~~~w~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~~~le~ig~~~~ 166 (232)
T 2qlz_A 87 EMFWYKGLDLGDAELRDFEISLSGLDTEPSTLKEMITDFIKANKELEKVLEAFKTIESYRSSLMRKIKEAYLKEIGDMTQ 166 (232)
T ss_dssp TEEEEEEEECCSCCCCCEEEECTTSCSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCTTH
T ss_pred HHHHHHHhhccccccchhhhhHhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccH
Confidence 0000 11111111111 22 125
Q ss_pred HHHHHHHHHcccCCHHHHHHHHhhcccCCCccCHHHHHHHHHHHHhccccccc
Q 010353 114 VELVQGLLEHGRLTLKQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERC 166 (512)
Q Consensus 114 ~~Iv~~lL~~G~l~~~~li~~~~~~~~~~~~~~~~~l~~~f~~Lv~~~fi~rv 166 (512)
..++-.+|.+|-+|.+++-+.+.- +...|...+..|.+.|.|.+.
T Consensus 167 ~~~l~~~l~~~~~t~~~la~~~~l--------~~~~V~~~l~~L~~~~~v~~~ 211 (232)
T 2qlz_A 167 LAILHYLLLNGRATVEELSDRLNL--------KEREVREKISEMARFVPVKII 211 (232)
T ss_dssp HHHHHHHHHSSEEEHHHHHHHHTC--------CHHHHHHHHHHHTTTSCEEEE
T ss_pred HHHHHHHHhcCCCCHHHHHHHhCc--------CHHHHHHHHHHHHhcCCeEEe
Confidence 677777899999999999888642 678899999999999999765
No 6
>2nr3_A Hypothetical protein; APC84902, conserved domain, pseudomonas syringae PV. tomato STR. DC3000, structural genomics, PSI-2; 2.21A {Pseudomonas syringae PV} PDB: 3bz6_A
Probab=95.41 E-value=0.2 Score=44.29 Aligned_cols=124 Identities=19% Similarity=0.252 Sum_probs=97.1
Q ss_pred hchhHHHHHHHHHhc-------CCCcHHHHHHhc----------CCCHHHHHHHHHHHHhccccceecccCCCCCCCCCC
Q 010353 18 FGDLVAKVCECLLRK-------GPLTRQNVKRYT----------ELSDEQVKNALLVLIQQNCVQAFTTEQPDGFADGPK 80 (512)
Q Consensus 18 FG~~v~~V~~~Ll~~-------G~ltl~~I~~~t----------~l~~~~Vr~aL~vLIQhn~V~~~~~~~~~~~~~~~~ 80 (512)
+-+.-++|..||+.+ =++||..|...+ +++..+|..+|=.|.+.++|... . + .+
T Consensus 22 Ls~~EaRVlG~LiEK~~TTPd~YPLsLNaL~~aCNQKsnRePVm~l~e~eV~~aLd~L~~~~Lv~~~--~--g-----sR 92 (183)
T 2nr3_A 22 LNSTEVRILGCLIEKQATNPETYPLTLNALVIACNQKTSRDPVMNLTQGQVGQSLRALEGRGLTRLV--M--G-----SR 92 (183)
T ss_dssp BCHHHHHHHHHHHHHHHHCGGGCSEEHHHHHHHHTCSSSCSSCCCCCHHHHHHHHHHHHHTTSEEEE--C--C-----SS
T ss_pred CCHHHHHHHHHhhhhcccCCCcCcchHHHHHHHhccccccCccccCCHHHHHHHHHHHHHCCCeeec--c--C-----Cc
Confidence 566788999999975 478999997664 47889999999999999999622 2 1 12
Q ss_pred CccEEEechhhHHHHhchhhHHHHHHHHhhhhHHHHHHHHHHcccCCHHHHHHHHhhcccCCCccCHHHHHHHHHHHHhc
Q 010353 81 ANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTLKQMFDRAKSSEKEGNLVDLDSLRETLVKLVTA 160 (512)
Q Consensus 81 ~~~~Y~~~~~~il~rlR~pr~l~~i~~~~G~~a~~Iv~~lL~~G~l~~~~li~~~~~~~~~~~~~~~~~l~~~f~~Lv~~ 160 (512)
+..|+-+..+. -.+......|+-.||..|--|+.++-.+..- +- +..+.++++..+..|+..
T Consensus 93 -v~Ky~Hr~~~~--------------l~l~~~e~All~~LlLRGpQT~gELRtRs~R-l~--~F~d~~~Ve~~L~~L~~r 154 (183)
T 2nr3_A 93 -ADRWEHKVDKG--------------LELVPAQVILTGLLLLRGPQTVSELLTRSNR-MH--DFEDSEQVVHQLERLIAR 154 (183)
T ss_dssp -CCEEEECHHHH--------------HTCCHHHHHHHHHHHHHCSEEHHHHHHHTTT-TS--CCSSHHHHHHHHHHHHHT
T ss_pred -hHHHHhhhhhh--------------cCCCHHHHHHHHHHHhcCCCChHHHHHhhhc-CC--cCCCHHHHHHHHHHHhhC
Confidence 57898877652 2455778889999999999999999877532 21 244788999999999999
Q ss_pred ccccccCC
Q 010353 161 HYVERCPA 168 (512)
Q Consensus 161 ~fi~rv~~ 168 (512)
.|+.+.|.
T Consensus 155 ~lV~~LpR 162 (183)
T 2nr3_A 155 GLATLVPR 162 (183)
T ss_dssp TSEEEECC
T ss_pred cHHHhcCC
Confidence 99998874
No 7
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=95.38 E-value=0.018 Score=44.78 Aligned_cols=57 Identities=12% Similarity=0.226 Sum_probs=47.3
Q ss_pred HHHHHHHHHhcCCCcchhhhhhhcCCCcc-cHHHHHHHHhhcccceEEEEecCCCCCceEEEEEEeh
Q 010353 372 AYRIFRLLSKSGRLLETDKISDTTFVEKK-DAPKILYKLWKDGYLLMEKLVVTGARQSQFLLWKVNR 437 (512)
Q Consensus 372 ~~Ri~r~l~~~~~l~eek~i~~~ami~~k-~~r~~Ly~L~~~g~v~~QEvpk~~~~~~t~~lw~v~~ 437 (512)
.-+|+.+|..+|.. ..++|++...|+.. .+|..||.|.++|+|.-+ + .+|. +|++..
T Consensus 13 ~~~IL~~Lk~~g~~-ta~eiA~~Lgit~~~aVr~hL~~Le~eGlV~~~----~--~gRP--~w~LT~ 70 (79)
T 1xmk_A 13 KEKICDYLFNVSDS-SALNLAKNIGLTKARDINAVLIDMERQGDVYRQ----G--TTPP--IWHLTD 70 (79)
T ss_dssp HHHHHHHHHHTCCE-EHHHHHHHHCGGGHHHHHHHHHHHHHTTSEEEE----C--SSSC--EEEECH
T ss_pred HHHHHHHHHHcCCc-CHHHHHHHcCCCcHHHHHHHHHHHHHCCCEEec----C--CCCC--CeEeCH
Confidence 35788899999988 99999999999998 999999999999999733 1 2233 888764
No 8
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=95.30 E-value=0.29 Score=40.04 Aligned_cols=81 Identities=11% Similarity=0.069 Sum_probs=59.1
Q ss_pred CccHHHHHHHHHHHHhhhchhHHHHHHHHHhcCCCcHHHHHHhcCCCHHHHHHHHHHHHhccccceecccCCCCCCCCCC
Q 010353 1 MLTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQPDGFADGPK 80 (512)
Q Consensus 1 m~s~~~~~Lc~~iv~~~FG~~v~~V~~~Ll~~G~ltl~~I~~~t~l~~~~Vr~aL~vLIQhn~V~~~~~~~~~~~~~~~~ 80 (512)
||.-....-...+++-.-.+.--.|..+| ..|++|..+|++.++++++.|...|-.|.+.|+|...... +
T Consensus 2 ~m~m~~~~~~~~~~~~l~~~~r~~IL~~L-~~~~~~~~ela~~l~is~~tv~~~l~~L~~~gli~~~~~g---------r 71 (114)
T 2oqg_A 2 GMTVGTYAELASVFAALSDETRWEILTEL-GRADQSASSLATRLPVSRQAIAKHLNALQACGLVESVKVG---------R 71 (114)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHH-HHSCBCHHHHHHHSSSCHHHHHHHHHHHHHTTSEEEEEET---------T
T ss_pred CCCcCcHHHHHHHHHHhCChHHHHHHHHH-HcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeeEEecC---------C
Confidence 44433323334445444446667888888 7899999999999999999999999999999999733221 1
Q ss_pred CccEEEechhhH
Q 010353 81 ANTQYVVLFDNI 92 (512)
Q Consensus 81 ~~~~Y~~~~~~i 92 (512)
..+|.+.....
T Consensus 72 -~~~y~l~~~~~ 82 (114)
T 2oqg_A 72 -EIRYRALGAEL 82 (114)
T ss_dssp -EEEEEECSHHH
T ss_pred -EEEEEechHHH
Confidence 46788887654
No 9
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=95.29 E-value=0.12 Score=42.26 Aligned_cols=76 Identities=13% Similarity=0.086 Sum_probs=58.0
Q ss_pred HHHHHHHHhhhchhHHHHHHHHHhcCCCcHHHHHHhcCCCHHHHHHHHHHHHhccccceecccCCCCCCCCCCCccEEEe
Q 010353 8 KHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQPDGFADGPKANTQYVV 87 (512)
Q Consensus 8 ~Lc~~iv~~~FG~~v~~V~~~Ll~~G~ltl~~I~~~t~l~~~~Vr~aL~vLIQhn~V~~~~~~~~~~~~~~~~~~~~Y~~ 87 (512)
+-...+++-...+.--+|...|. .|++++.+|++.++++.+.|.+.|-.|.+.|+|.... . + + ..+|.+
T Consensus 14 ~~~~~~~~~l~~~~r~~IL~~L~-~~~~~~~ela~~l~is~stvs~~L~~L~~~Glv~~~~-~--g------r-~~~y~l 82 (106)
T 1r1u_A 14 ERVTEIFKALGDYNRIRIMELLS-VSEASVGHISHQLNLSQSNVSHQLKLLKSVHLVKAKR-Q--G------Q-SMIYSL 82 (106)
T ss_dssp HHHHHHHHHTCSHHHHHHHHHHH-HCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEE-E--T------T-EEEEEE
T ss_pred HHHHHHHHHhCCHHHHHHHHHHH-hCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEE-e--C------C-EEEEEE
Confidence 33444555544566678888887 8999999999999999999999999999999998332 2 1 1 478988
Q ss_pred chhhHHH
Q 010353 88 LFDNILH 94 (512)
Q Consensus 88 ~~~~il~ 94 (512)
+.+.+..
T Consensus 83 ~~~~~~~ 89 (106)
T 1r1u_A 83 DDIHVAT 89 (106)
T ss_dssp SSHHHHH
T ss_pred ChHHHHH
Confidence 8766543
No 10
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A
Probab=94.76 E-value=0.28 Score=39.46 Aligned_cols=82 Identities=13% Similarity=0.132 Sum_probs=60.3
Q ss_pred HHHhhhchhHHHHHHHHHhcCCCcHHHHHHhcCCCHHHHHHHHHHHHhccccceecccCCCCCCCCCCCccEEEechhhH
Q 010353 13 VITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQPDGFADGPKANTQYVVLFDNI 92 (512)
Q Consensus 13 iv~~~FG~~v~~V~~~Ll~~G~ltl~~I~~~t~l~~~~Vr~aL~vLIQhn~V~~~~~~~~~~~~~~~~~~~~Y~~~~~~i 92 (512)
+++-.=++.--+|...| ..|+.|..+|++.++++++.|.+.|-.|.+.|+|.. ... + + ..+|+++.+.
T Consensus 16 ~~~~l~~~~r~~Il~~L-~~~~~~~~ela~~l~is~~tvs~~L~~L~~~Glv~~-~~~--g------~-~~~y~l~~~~- 83 (102)
T 3pqk_A 16 LLKTLSHPVRLMLVCTL-VEGEFSVGELEQQIGIGQPTLSQQLGVLRESGIVET-RRN--I------K-QIFYRLTEAK- 83 (102)
T ss_dssp HHHHHCSHHHHHHHHHH-HTCCBCHHHHHHHHTCCTTHHHHHHHHHHHTTSEEE-ECS--S------S-CCEEEECSST-
T ss_pred HHHHcCCHHHHHHHHHH-HhCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEE-EEe--C------C-EEEEEECcHH-
Confidence 44444456677777777 569999999999999999999999999999999973 222 1 1 4689999763
Q ss_pred HHHhchhhHHHHHHHHhhh
Q 010353 93 LHRVRFAKFLTILSQEFDQ 111 (512)
Q Consensus 93 l~rlR~pr~l~~i~~~~G~ 111 (512)
+..++..+.+.|+.
T Consensus 84 -----~~~~~~~l~~~~~~ 97 (102)
T 3pqk_A 84 -----AAQLVNALYTIFCA 97 (102)
T ss_dssp -----HHHHHHHHHHHTGG
T ss_pred -----HHHHHHHHHHHhcc
Confidence 34455555555543
No 11
>3bz6_A UPF0502 protein pspto_2686; APC84902, conserved domain, pseudomonas syringae PV. tomato DC3000, structural genomics, PSI-2; 2.21A {Pseudomonas syringae PV} SCOP: a.4.5.75 a.4.5.75
Probab=94.70 E-value=0.53 Score=41.66 Aligned_cols=124 Identities=20% Similarity=0.267 Sum_probs=96.3
Q ss_pred hchhHHHHHHHHHhc-------CCCcHHHHHHhc----------CCCHHHHHHHHHHHHhccccceecccCCCCCCCCCC
Q 010353 18 FGDLVAKVCECLLRK-------GPLTRQNVKRYT----------ELSDEQVKNALLVLIQQNCVQAFTTEQPDGFADGPK 80 (512)
Q Consensus 18 FG~~v~~V~~~Ll~~-------G~ltl~~I~~~t----------~l~~~~Vr~aL~vLIQhn~V~~~~~~~~~~~~~~~~ 80 (512)
+-+.-++|..||+.+ =++||..|...+ +++...|..+|=.|...++|.- .. + .+
T Consensus 22 Ls~~E~RVlG~LiEK~~TTPd~YPLsLNaL~~aCNQKsnR~PVm~l~e~eV~~ald~L~~~~lv~~--~~--g-----sR 92 (183)
T 3bz6_A 22 LNSTEVRILGCLIEKQATNPETYPLTLNALVIACNQKTSRDPVMNLTQGQVGQSLRALEGRGLTRL--VM--G-----SR 92 (183)
T ss_dssp BCHHHHHHHHHHHHHHHHCGGGCSEEHHHHHHHHTCSSSCSSCCCCCHHHHHHHHHHHHHTTSEEE--EC--C-----SS
T ss_pred CCHHHHHHHHhhhhhcccCCCcCcchHHHHHHHhccccccCccccCCHHHHHHHHHHHHHCCCeEe--ec--C-----Cc
Confidence 456778899999875 478999997664 4788999999999999999962 22 1 12
Q ss_pred CccEEEechhhHHHHhchhhHHHHHHHHhhhhHHHHHHHHHHcccCCHHHHHHHHhhcccCCCccCHHHHHHHHHHHHhc
Q 010353 81 ANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTLKQMFDRAKSSEKEGNLVDLDSLRETLVKLVTA 160 (512)
Q Consensus 81 ~~~~Y~~~~~~il~rlR~pr~l~~i~~~~G~~a~~Iv~~lL~~G~l~~~~li~~~~~~~~~~~~~~~~~l~~~f~~Lv~~ 160 (512)
+..|+-+..+.+ .+......|+-.||..|--|+.++-.+..- +- +..+.++++..+..|+..
T Consensus 93 -v~Ky~Hr~~~~l--------------~l~~~e~All~~LlLRGpQT~GELRtRs~R-l~--~F~d~~~Ve~~L~~L~~r 154 (183)
T 3bz6_A 93 -ADRWEHKVDKGL--------------ELVPAQVILTGLLLLRGPQTVSELLTRSNR-MH--DFEDSEQVVHQLERLIAR 154 (183)
T ss_dssp -CCEEEECHHHHH--------------TCCHHHHHHHHHHHHHCSBCHHHHHHHHTT-TS--CCSSHHHHHHHHHHHHHH
T ss_pred -cHHHHcccchhc--------------CCCHHHHHHHHHHHhcCCCChhHHHHhHhh-cc--ccCCHHHHHHHHHHHhcC
Confidence 578988876632 355677889999999999999999887532 21 244788999999999999
Q ss_pred ccccccCC
Q 010353 161 HYVERCPA 168 (512)
Q Consensus 161 ~fi~rv~~ 168 (512)
.++..+|.
T Consensus 155 ~lv~~LpR 162 (183)
T 3bz6_A 155 GLATLVPR 162 (183)
T ss_dssp TSEEEECC
T ss_pred CceeecCC
Confidence 99988863
No 12
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=94.58 E-value=0.097 Score=40.53 Aligned_cols=44 Identities=23% Similarity=0.235 Sum_probs=40.6
Q ss_pred HHHHHHHHhcCCCcHHHHHHhcCCCHHHHHHHHHHHHhccccce
Q 010353 23 AKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQA 66 (512)
Q Consensus 23 ~~V~~~Ll~~G~ltl~~I~~~t~l~~~~Vr~aL~vLIQhn~V~~ 66 (512)
.+|..+|...|++|..+|++.++++.+.|+..|-.|.+.|+|..
T Consensus 3 ~~Il~~L~~~~~~s~~eLa~~lgvs~~tv~r~L~~L~~~GlI~~ 46 (81)
T 2htj_A 3 NEILEFLNRHNGGKTAEIAEALAVTDYQARYYLLLLEKAGMVQR 46 (81)
T ss_dssp HHHHHHHHHSCCCCHHHHHHHHTSCHHHHHHHHHHHHHHTSEEE
T ss_pred HHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEE
Confidence 46788888889999999999999999999999999999999973
No 13
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=94.36 E-value=0.51 Score=39.58 Aligned_cols=74 Identities=15% Similarity=0.268 Sum_probs=56.2
Q ss_pred HHHHHHHHhC--chHHHHHHHHHhcCC--CcchhhhhhhcCCCcccHHHHHHHHhhcccceEEEEecCCCCCceEEEEEE
Q 010353 360 VESVVSKRYG--RDAYRIFRLLSKSGR--LLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTGARQSQFLLWKV 435 (512)
Q Consensus 360 le~~v~~~~G--~~~~Ri~r~l~~~~~--l~eek~i~~~ami~~k~~r~~Ly~L~~~g~v~~QEvpk~~~~~~t~~lw~v 435 (512)
++.++...|| ..-.+|+.+|...+. + ...+|++...++...+...|..|.+.|||.-...+... ....|.|..
T Consensus 14 ~~~~l~~~~gLt~~e~~il~~L~~~~~~~~-t~~eLa~~l~~s~sTV~r~L~~L~~~GlV~r~~~~~d~--~~~~~~y~~ 90 (123)
T 3r0a_A 14 VEDVIKCALNLTKADLNVMKSFLNEPDRWI-DTDALSKSLKLDVSTVQRSVKKLHEKEILQRSQQNLDG--GGYVYIYKI 90 (123)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHSTTCCE-EHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEEEECTT--SCEEEEEEE
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHCCCCCc-CHHHHHHHHCcCHHHHHHHHHHHHHCCCEEeeCCccCC--CcceEEEec
Confidence 4455555555 445678999988776 7 99999999999999999999999999999776555432 335566655
Q ss_pred e
Q 010353 436 N 436 (512)
Q Consensus 436 ~ 436 (512)
.
T Consensus 91 ~ 91 (123)
T 3r0a_A 91 Y 91 (123)
T ss_dssp C
T ss_pred C
Confidence 3
No 14
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=94.26 E-value=0.16 Score=40.67 Aligned_cols=64 Identities=14% Similarity=0.132 Sum_probs=50.8
Q ss_pred chhHHHHHHHHHhcCCCcHHHHHHhcCCCHHHHHHHHHHHHhccccceecccCCCCCCCCCCCccEEEechhhHH
Q 010353 19 GDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQPDGFADGPKANTQYVVLFDNIL 93 (512)
Q Consensus 19 G~~v~~V~~~Ll~~G~ltl~~I~~~t~l~~~~Vr~aL~vLIQhn~V~~~~~~~~~~~~~~~~~~~~Y~~~~~~il 93 (512)
++.--+|...|.. |+.|..+|++.++++.+.|.+-|-.|.+.|+|.. ... +...+|+++.+.+-
T Consensus 22 ~~~r~~Il~~L~~-~~~~~~ela~~l~is~~tvs~~L~~L~~~Glv~~-~~~---------g~~~~y~l~~~~~~ 85 (98)
T 3jth_A 22 NERRLQILCMLHN-QELSVGELCAKLQLSQSALSQHLAWLRRDGLVTT-RKE---------AQTVYYTLKSEEVK 85 (98)
T ss_dssp SHHHHHHHHHTTT-SCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE-ECC---------TTCCEEEECCHHHH
T ss_pred CHHHHHHHHHHhc-CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEE-EEe---------CCEEEEEECHHHHH
Confidence 4555667777765 9999999999999999999999999999999973 222 11468999876544
No 15
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=93.95 E-value=0.057 Score=42.17 Aligned_cols=45 Identities=31% Similarity=0.442 Sum_probs=40.6
Q ss_pred HHHHHHHHhcC---CCcchhhhhhhcCCCcccHHHHHHHHhhcccceEE
Q 010353 373 YRIFRLLSKSG---RLLETDKISDTTFVEKKDAPKILYKLWKDGYLLME 418 (512)
Q Consensus 373 ~Ri~r~l~~~~---~l~eek~i~~~ami~~k~~r~~Ly~L~~~g~v~~Q 418 (512)
-+|+.+|...+ .+ ...+|++...++...++..||+|.++|+|...
T Consensus 13 ~~IL~~L~~~~pg~~~-t~~eLA~~Lgvsr~tV~~~L~~Le~~G~I~~~ 60 (81)
T 1qbj_A 13 QRILKFLEELGEGKAT-TAHDLSGKLGTPKKEINRVLYSLAKKGKLQKE 60 (81)
T ss_dssp HHHHHHHHHHCTTCCB-CHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHcCCCCCc-CHHHHHHHHCcCHHHHHHHHHHHHHCCCEEec
Confidence 45888888888 77 99999999999999999999999999999654
No 16
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=93.93 E-value=0.25 Score=39.20 Aligned_cols=65 Identities=11% Similarity=0.070 Sum_probs=52.2
Q ss_pred chhHHHHHHHHHhcCCCcHHHHHHhcCCCHHHHHHHHHHHHhccccceecccCCCCCCCCCCCccEEEechhhHH
Q 010353 19 GDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQPDGFADGPKANTQYVVLFDNIL 93 (512)
Q Consensus 19 G~~v~~V~~~Ll~~G~ltl~~I~~~t~l~~~~Vr~aL~vLIQhn~V~~~~~~~~~~~~~~~~~~~~Y~~~~~~il 93 (512)
.+.-..|...|...|++|..+|++.++++++.|...|-.|...|+|.... . + + ..+|.++.+.+-
T Consensus 23 ~~~~~~il~~l~~~~~~s~~ela~~l~is~~tvs~~l~~L~~~glv~~~~-~--~------r-~~~y~l~~~~~~ 87 (99)
T 3cuo_A 23 HPKRLLILCMLSGSPGTSAGELTRITGLSASATSQHLARMRDEGLIDSQR-D--A------Q-RILYSIKNEAVN 87 (99)
T ss_dssp SHHHHHHHHHHTTCCSEEHHHHHHHHCCCHHHHHHHHHHHHHTTSEEEEE-C--S------S-CEEEEECCHHHH
T ss_pred ChHHHHHHHHHHhCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEe-c--C------C-EEEEEEChHHHH
Confidence 35666788888777799999999999999999999999999999998332 2 1 1 468888876543
No 17
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=93.60 E-value=0.26 Score=41.42 Aligned_cols=58 Identities=14% Similarity=0.177 Sum_probs=48.5
Q ss_pred HHHHhhhc--hhHHHHHHHHHhcCC--CcHHHHHHhcCCCHHHHHHHHHHHHhccccceecc
Q 010353 12 HVITNHFG--DLVAKVCECLLRKGP--LTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTT 69 (512)
Q Consensus 12 ~iv~~~FG--~~v~~V~~~Ll~~G~--ltl~~I~~~t~l~~~~Vr~aL~vLIQhn~V~~~~~ 69 (512)
.++...|| +.=..|..+|..+|. +|..+|+..++++.+.|...|-.|.+.|+|.-...
T Consensus 16 ~~l~~~~gLt~~e~~il~~L~~~~~~~~t~~eLa~~l~~s~sTV~r~L~~L~~~GlV~r~~~ 77 (123)
T 3r0a_A 16 DVIKCALNLTKADLNVMKSFLNEPDRWIDTDALSKSLKLDVSTVQRSVKKLHEKEILQRSQQ 77 (123)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHSTTCCEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred HHHHHHcCCCHHHHHHHHHHHHCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEeeCC
Confidence 34555555 666789999998876 99999999999999999999999999999984433
No 18
>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=93.57 E-value=0.33 Score=40.70 Aligned_cols=68 Identities=18% Similarity=0.146 Sum_probs=53.1
Q ss_pred chhHHHHHHHHHhcCCCcHHHHHHhcCCCHHHHHHHHHHHHhccccceecccCCCCCCCCCCCccEEEechhhHHHHh
Q 010353 19 GDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQPDGFADGPKANTQYVVLFDNILHRV 96 (512)
Q Consensus 19 G~~v~~V~~~Ll~~G~ltl~~I~~~t~l~~~~Vr~aL~vLIQhn~V~~~~~~~~~~~~~~~~~~~~Y~~~~~~il~rl 96 (512)
.+.--+|...|...|+.|+.+|++.++++.+.|.+-|-.|.+.|+|.. ... + + ..+|+++.+.+...+
T Consensus 41 ~~~rl~IL~~L~~~~~~s~~eLa~~l~is~stvs~~L~~L~~~Glv~~-~~~--g------r-~~~y~l~~~~~~~~~ 108 (122)
T 1u2w_A 41 DENRAKITYALCQDEELCVCDIANILGVTIANASHHLRTLYKQGVVNF-RKE--G------K-LALYSLGDEHIRQIM 108 (122)
T ss_dssp SHHHHHHHHHHHHSSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE-C-------------CCEEEESCHHHHHHH
T ss_pred CHHHHHHHHHHHHCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEE-EEE--C------C-EEEEEECHHHHHHHH
Confidence 344457888887789999999999999999999999999999999983 322 1 1 468999977655443
No 19
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=93.48 E-value=0.32 Score=39.82 Aligned_cols=73 Identities=14% Similarity=0.104 Sum_probs=55.8
Q ss_pred HHHHHHhhhchhHHHHHHHHHhcCCCcHHHHHHhcCCCHHHHHHHHHHHHhccccceecccCCCCCCCCCCCccEEEech
Q 010353 10 AVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQPDGFADGPKANTQYVVLF 89 (512)
Q Consensus 10 c~~iv~~~FG~~v~~V~~~Ll~~G~ltl~~I~~~t~l~~~~Vr~aL~vLIQhn~V~~~~~~~~~~~~~~~~~~~~Y~~~~ 89 (512)
...+++-.-.+.--+|...|. .|++|+.+|+..++++++.|...|-.|.+.|+|.... . + + ..+|.++.
T Consensus 15 ~~~~~~al~~~~r~~IL~~L~-~~~~s~~eLa~~lgis~stvs~~L~~L~~~GlV~~~~-~--g------r-~~~y~l~~ 83 (108)
T 2kko_A 15 VARVGKALANGRRLQILDLLA-QGERAVEAIATATGMNLTTASANLQALKSGGLVEARR-E--G------T-RQYYRIAG 83 (108)
T ss_dssp HHHHHHHHTTSTTHHHHHHHT-TCCEEHHHHHHHHTCCHHHHHHHHHHHHHHTSEEEEE-E--T------T-EEEEEESC
T ss_pred HHHHHHHhCCHHHHHHHHHHH-cCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEE-e--C------C-EEEEEECh
Confidence 344555555566677888776 6999999999999999999999999999999998332 2 1 1 46888887
Q ss_pred hhHH
Q 010353 90 DNIL 93 (512)
Q Consensus 90 ~~il 93 (512)
+.+.
T Consensus 84 ~~~~ 87 (108)
T 2kko_A 84 EDVA 87 (108)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6543
No 20
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=93.42 E-value=1.3 Score=37.48 Aligned_cols=61 Identities=13% Similarity=0.152 Sum_probs=46.4
Q ss_pred chHHHHHHHHH-hcCCCcchhhhhhhcCCCcccHHHHHHHHhhcccceEEEEecCCCCCceEEEEE
Q 010353 370 RDAYRIFRLLS-KSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTGARQSQFLLWK 434 (512)
Q Consensus 370 ~~~~Ri~r~l~-~~~~l~eek~i~~~ami~~k~~r~~Ly~L~~~g~v~~QEvpk~~~~~~t~~lw~ 434 (512)
..-.+++.+|. .+|.+ ...+|++...++...+...+.+|.+.|||.-...| ...|.+|+.-
T Consensus 26 ~~~~~il~~L~~~~~~~-t~~ela~~l~~~~stvs~~l~~L~~~G~v~r~~~~---~d~r~~~~~~ 87 (152)
T 1ku9_A 26 KSVGAVYAILYLSDKPL-TISDIMEELKISKGNVSMSLKKLEELGFVRKVWIK---GERKNYYEAV 87 (152)
T ss_dssp HHHHHHHHHHHHCSSCE-EHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECCT---TCSSCEEEEC
T ss_pred hhHHHHHHHHHHcCCCC-CHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEecC---CCceEEEeec
Confidence 45567888885 45676 99999999999999999999999999999533212 2345555544
No 21
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=93.36 E-value=0.61 Score=37.33 Aligned_cols=50 Identities=24% Similarity=0.259 Sum_probs=42.4
Q ss_pred hchhHHHHHHHHHh-cCCCcHHHHHHhcCCCHHHHHHHHHHHHhcccccee
Q 010353 18 FGDLVAKVCECLLR-KGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAF 67 (512)
Q Consensus 18 FG~~v~~V~~~Ll~-~G~ltl~~I~~~t~l~~~~Vr~aL~vLIQhn~V~~~ 67 (512)
+.+.-..+...|+. .|++|..+|++.++++.+.|...|-.|.+.|+|...
T Consensus 19 l~~~~~~~l~~l~~~~~~~t~~ela~~l~is~~tv~~~l~~L~~~g~v~~~ 69 (109)
T 2d1h_A 19 ITDTDVAVLLKMVEIEKPITSEELADIFKLSKTTVENSLKKLIELGLVVRT 69 (109)
T ss_dssp CCHHHHHHHHHHHHHCSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCHHHHHHHHHHHHcCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEee
Confidence 34555566666666 889999999999999999999999999999999843
No 22
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=93.31 E-value=0.045 Score=42.71 Aligned_cols=45 Identities=16% Similarity=0.288 Sum_probs=40.1
Q ss_pred hHHHHHHHHHhcCCCcchhhhhhhcCCCcccHHHHHHHHhhcccceE
Q 010353 371 DAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLM 417 (512)
Q Consensus 371 ~~~Ri~r~l~~~~~l~eek~i~~~ami~~k~~r~~Ly~L~~~g~v~~ 417 (512)
.+.+|+.+|...| + .-.+|++...++...+|..||+|.++|+|.-
T Consensus 18 ~~~~IL~lL~~~g-~-sa~eLAk~LgiSk~aVr~~L~~Le~eG~I~~ 62 (82)
T 1oyi_A 18 IVCEAIKTIGIEG-A-TAAQLTRQLNMEKREVNKALYDLQRSAMVYS 62 (82)
T ss_dssp HHHHHHHHHSSST-E-EHHHHHHHSSSCHHHHHHHHHHHHHHTSSEE
T ss_pred HHHHHHHHHHHcC-C-CHHHHHHHHCcCHHHHHHHHHHHHHCCCEEe
Confidence 3567888888776 6 9999999999999999999999999999954
No 23
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=92.72 E-value=2.4 Score=35.47 Aligned_cols=75 Identities=11% Similarity=0.146 Sum_probs=55.8
Q ss_pred HHHHHhhhc--hhHHHHHHHHHhcCCCcHHHHHHhcCCCHHHHHHHHHHHHhccccceecccCCCCCCCCCCCccEEEec
Q 010353 11 VHVITNHFG--DLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQPDGFADGPKANTQYVVL 88 (512)
Q Consensus 11 ~~iv~~~FG--~~v~~V~~~Ll~~G~ltl~~I~~~t~l~~~~Vr~aL~vLIQhn~V~~~~~~~~~~~~~~~~~~~~Y~~~ 88 (512)
...+..+|| +.--.|...|..+|++|..+|++.++++++.|...|-.|.+.|+|.-...+. + +...+|.+.
T Consensus 20 ~~~~~~~~~l~~~~~~iL~~l~~~~~~~~~ela~~l~is~~~vs~~l~~L~~~gli~~~~~~~-d------~r~~~~~lT 92 (142)
T 3bdd_A 20 SNLFEKQLGISLTRYSILQTLLKDAPLHQLALQERLQIDRAAVTRHLKLLEESGYIIRKRNPD-N------QREVLVWPT 92 (142)
T ss_dssp HHHHHHHHSSCHHHHHHHHHHHHHCSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECSS-S------TTCEEEEEC
T ss_pred HHHHHHHcCCCHHHHHHHHHHHhCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEecCCCC-C------CCeeEEEEC
Confidence 344455545 4555688888888999999999999999999999999999999998443332 2 224567776
Q ss_pred hhhH
Q 010353 89 FDNI 92 (512)
Q Consensus 89 ~~~i 92 (512)
..+.
T Consensus 93 ~~G~ 96 (142)
T 3bdd_A 93 EQAR 96 (142)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5543
No 24
>2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis}
Probab=92.66 E-value=0.77 Score=37.89 Aligned_cols=80 Identities=14% Similarity=0.130 Sum_probs=58.2
Q ss_pred ccHHHHHHHHHHHHhhhchhHHHHHHHHHhcCCCcHHHHHHhcCCCHHHHHHHHHHHHhccccceecccCCCCCCCCCCC
Q 010353 2 LTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQPDGFADGPKA 81 (512)
Q Consensus 2 ~s~~~~~Lc~~iv~~~FG~~v~~V~~~Ll~~G~ltl~~I~~~t~l~~~~Vr~aL~vLIQhn~V~~~~~~~~~~~~~~~~~ 81 (512)
++.....-...+++-...+.--.|...|.. |..++.+|++.++++.+.|...|-.|.+.|+|. +.... +
T Consensus 14 ~~~~~~~~~~~~~~~l~~~~~~~il~~L~~-~~~s~~ela~~l~is~stvsr~l~~Le~~Glv~-~~~~~--------r- 82 (119)
T 2lkp_A 14 LDSQAAAQVASTLQALATPSRLMILTQLRN-GPLPVTDLAEAIGMEQSAVSHQLRVLRNLGLVV-GDRAG--------R- 82 (119)
T ss_dssp CHHHHHHHHHHHHHHHCCHHHHHHHHHHHH-CCCCHHHHHHHHSSCHHHHHHHHHHHHHHCSEE-EEEET--------T-
T ss_pred cCHHHHHHHHHHHHHhCCHHHHHHHHHHHH-CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEE-EEecC--------C-
Confidence 344444444555555444556678888876 889999999999999999999999999999997 43321 1
Q ss_pred ccEEEechhhH
Q 010353 82 NTQYVVLFDNI 92 (512)
Q Consensus 82 ~~~Y~~~~~~i 92 (512)
..+|++....+
T Consensus 83 ~~~~~~~~~~~ 93 (119)
T 2lkp_A 83 SIVYSLYDTHV 93 (119)
T ss_dssp EEEEEESCHHH
T ss_pred EEEEEEchHHH
Confidence 46788875543
No 25
>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A
Probab=92.66 E-value=0.75 Score=38.51 Aligned_cols=74 Identities=12% Similarity=0.103 Sum_probs=55.1
Q ss_pred HHHHHHhhhchhHHHHHHHHHhcCCCcHHHHHHhcCCCHHHHHHHHHHHHhccccceecccCCCCCCCCCCCccEEEech
Q 010353 10 AVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQPDGFADGPKANTQYVVLF 89 (512)
Q Consensus 10 c~~iv~~~FG~~v~~V~~~Ll~~G~ltl~~I~~~t~l~~~~Vr~aL~vLIQhn~V~~~~~~~~~~~~~~~~~~~~Y~~~~ 89 (512)
...+++-.-.+.--+|...|. .|+.++.+|++.++++.+.|.+.|-.|.+.|+|.. ... + + ..+|+++.
T Consensus 36 ~~~~~kaL~~~~rl~IL~~L~-~~~~s~~ela~~lgis~stvs~~L~~Le~~Glv~~-~~~--g------r-~~~y~l~~ 104 (122)
T 1r1t_A 36 LAEFFAVLADPNRLRLLSLLA-RSELCVGDLAQAIGVSESAVSHQLRSLRNLRLVSY-RKQ--G------R-HVYYQLQD 104 (122)
T ss_dssp HHHHHHHHCCHHHHHHHHHHT-TCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE-EEE--T------T-EEEEEESS
T ss_pred HHHHHHHhCCHHHHHHHHHHH-cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEE-EEe--C------C-EEEEEECh
Confidence 344444443455557787775 58999999999999999999999999999999983 332 1 1 46899987
Q ss_pred hhHHH
Q 010353 90 DNILH 94 (512)
Q Consensus 90 ~~il~ 94 (512)
+.+..
T Consensus 105 ~~l~~ 109 (122)
T 1r1t_A 105 HHIVA 109 (122)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76543
No 26
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=92.64 E-value=0.1 Score=40.27 Aligned_cols=45 Identities=31% Similarity=0.442 Sum_probs=40.9
Q ss_pred HHHHHHHHhcC---CCcchhhhhhhcCCCcccHHHHHHHHhhcccceEE
Q 010353 373 YRIFRLLSKSG---RLLETDKISDTTFVEKKDAPKILYKLWKDGYLLME 418 (512)
Q Consensus 373 ~Ri~r~l~~~~---~l~eek~i~~~ami~~k~~r~~Ly~L~~~g~v~~Q 418 (512)
.+|+.+|...+ .+ ...+||+...++...++..||+|.+.|+|.-+
T Consensus 17 ~~IL~~L~~~~~~~~~-t~~eLA~~Lgvs~~tV~~~L~~L~~~G~I~~~ 64 (77)
T 1qgp_A 17 QRILKFLEELGEGKAT-TAHDLSGKLGTPKKEINRVLYSLAKKGKLQKE 64 (77)
T ss_dssp HHHHHHHHHHCSSSCE-EHHHHHHHHCCCHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHcCCCCCc-CHHHHHHHHCcCHHHHHHHHHHHHHCCCEEec
Confidence 56888899888 77 99999999999999999999999999999554
No 27
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=92.60 E-value=0.61 Score=36.87 Aligned_cols=67 Identities=12% Similarity=0.158 Sum_probs=53.3
Q ss_pred chhHHHHHHHHHhcCCCcHHHHHHhcCCCHHHHHHHHHHHHhccccceecccCCCCCCCCCCCccEEEechhhH
Q 010353 19 GDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQPDGFADGPKANTQYVVLFDNI 92 (512)
Q Consensus 19 G~~v~~V~~~Ll~~G~ltl~~I~~~t~l~~~~Vr~aL~vLIQhn~V~~~~~~~~~~~~~~~~~~~~Y~~~~~~i 92 (512)
++.--.|...|..+|++|..+|++.++++++.|...|-.|.+.|+|.....+. + +...+|.+...+.
T Consensus 15 ~~~~~~iL~~L~~~~~~~~~ela~~l~is~~tvs~~l~~L~~~gli~~~~~~~-~------~r~~~~~lt~~g~ 81 (100)
T 1ub9_A 15 NPVRLGIMIFLLPRRKAPFSQIQKVLDLTPGNLDSHIRVLERNGLVKTYKVIA-D------RPRTVVEITDFGM 81 (100)
T ss_dssp SHHHHHHHHHHHHHSEEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEEECS-S------SCEEEEEECHHHH
T ss_pred ChHHHHHHHHHHhcCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEecCC-C------cceEEEEECHHHH
Confidence 35556788888889999999999999999999999999999999998433221 1 2257888887663
No 28
>2jsc_A Transcriptional regulator RV1994C/MT2050; cadmium, transcriptional repressor, solution structure, STRU genomics; NMR {Mycobacterium tuberculosis}
Probab=92.36 E-value=0.23 Score=41.39 Aligned_cols=69 Identities=17% Similarity=0.114 Sum_probs=53.0
Q ss_pred HHhhhchhHHHHHHHHHhcCCCcHHHHHHhcCCCHHHHHHHHHHHHhccccceecccCCCCCCCCCCCccEEEechhhHH
Q 010353 14 ITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQPDGFADGPKANTQYVVLFDNIL 93 (512)
Q Consensus 14 v~~~FG~~v~~V~~~Ll~~G~ltl~~I~~~t~l~~~~Vr~aL~vLIQhn~V~~~~~~~~~~~~~~~~~~~~Y~~~~~~il 93 (512)
++-.-.+.--+|...|. .|+.+..+|++.++++++.|.+.|-.|...|+|.... . + + ..+|+++.+.+.
T Consensus 15 ~~aL~~~~r~~IL~~L~-~~~~~~~eLa~~lgis~stvs~~L~~L~~~GlV~~~~-~--g------r-~~~y~l~~~~~~ 83 (118)
T 2jsc_A 15 GRALADPTRCRILVALL-DGVCYPGQLAAHLGLTRSNVSNHLSCLRGCGLVVATY-E--G------R-QVRYALADSHLA 83 (118)
T ss_dssp HHHHSSHHHHHHHHHHH-TTCCSTTTHHHHHSSCHHHHHHHHHHHTTTTSEEEEE-C--S------S-SEEEEESSHHHH
T ss_pred HHHhCCHHHHHHHHHHH-cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCceEEEE-E--C------C-EEEEEEChHHHH
Confidence 33334456667888776 7889999999999999999999999999999997322 2 1 1 468999876543
No 29
>1ldj_A Cullin homolog 1, CUL-1; cullin, ROC1, HRT1, zinc ring finger, ligase, ubiquitin, ubiquitination, SCF; 3.00A {Homo sapiens} SCOP: a.4.5.34 a.118.17.1 e.40.1.1 PDB: 1u6g_A 1ldk_A 1ldk_B 3rtr_A
Probab=92.33 E-value=0.8 Score=50.84 Aligned_cols=135 Identities=13% Similarity=0.114 Sum_probs=87.7
Q ss_pred cCCCcHHHHHHhcCCCHHHHHHHHHHHHhccccceecccCCCCCCCCCCCccEEEechh--hHHHHhchhhH--------
Q 010353 32 KGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQPDGFADGPKANTQYVVLFD--NILHRVRFAKF-------- 101 (512)
Q Consensus 32 ~G~ltl~~I~~~t~l~~~~Vr~aL~vLIQhn~V~~~~~~~~~~~~~~~~~~~~Y~~~~~--~il~rlR~pr~-------- 101 (512)
.+.+|+.+|...|+++...++.+|..|++++++. ..++...+.+..-.....|++|.+ .-..+++.|..
T Consensus 601 ~~~~t~~ei~~~t~i~~~~l~r~L~~l~k~~iL~-~~~~~~~~~~~~~~~~~~f~lN~~F~~k~~ri~i~~~~~~e~~~e 679 (760)
T 1ldj_A 601 EDAYTVQQLTDSTQIKMDILAQVLQILLKSKLLV-LEDENANVDEVELKPDTLIKLYLGYKNKKLRVNINVPMKTEQKQE 679 (760)
T ss_dssp SSEEEHHHHHHHTCCCHHHHHHHHHHHHHTTTEE-CSCTTCCTTTCCCCTTCEEEECSSCCCSSSSBCCCCCCTTHHHHH
T ss_pred CCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcce-eCCCccccccCCCCCCCEEEeeccccCCceEEEecCccccccchh
Confidence 4678999999999999999999999999999886 232100000000011246777754 22333333210
Q ss_pred ----HHHH-HHHhhhhHHHHHHHHHHcccCCHHHHHHHHhhcccCCCccCHHHHHHHHHHHHhcccccccC
Q 010353 102 ----LTIL-SQEFDQQCVELVQGLLEHGRLTLKQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCP 167 (512)
Q Consensus 102 ----l~~i-~~~~G~~a~~Iv~~lL~~G~l~~~~li~~~~~~~~~~~~~~~~~l~~~f~~Lv~~~fi~rv~ 167 (512)
-..| +++--..-+.||..+=..+.++-.+|+..+.+....-=..+...|+..+..|++.+||.|.+
T Consensus 680 ~~~~~~~v~~dR~~~i~AaIVRIMK~rK~l~h~~Lv~ev~~ql~~rF~p~~~~IKk~Ie~LIereYl~R~~ 750 (760)
T 1ldj_A 680 QETTHKNIEEDRKLLIQAAIVRIMKMRKVLKHQQLLGEVLTQLSSRFKPRVPVIKKCIDILIEKEYLERVD 750 (760)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSSEEEHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHTTSEEECS
T ss_pred hhhHHHHHHHHHHhHheeeehhhhhccCCCcHHHHHHHHHHHHhccCCCCHHHHHHHHHHHhhccceeeCC
Confidence 0111 11112346778888888899999999887765322111236889999999999999999985
No 30
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=92.32 E-value=0.34 Score=37.27 Aligned_cols=44 Identities=14% Similarity=0.212 Sum_probs=41.8
Q ss_pred HHHHHHHHHhcC---CCcHHHHHHhcCCCHHHHHHHHHHHHhccccc
Q 010353 22 VAKVCECLLRKG---PLTRQNVKRYTELSDEQVKNALLVLIQQNCVQ 65 (512)
Q Consensus 22 v~~V~~~Ll~~G---~ltl~~I~~~t~l~~~~Vr~aL~vLIQhn~V~ 65 (512)
-.+|..+|...| +.|..+|++..+++.+.|...|-.|.+-|+|.
T Consensus 16 ~~~IL~~L~~~~~~~~~t~~eLA~~Lgvs~~tV~~~L~~L~~~G~I~ 62 (77)
T 1qgp_A 16 EQRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLYSLAKKGKLQ 62 (77)
T ss_dssp HHHHHHHHHHHCSSSCEEHHHHHHHHCCCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEE
Confidence 378899999999 99999999999999999999999999999997
No 31
>2zkz_A Transcriptional repressor PAGR; protein-DNA, HTH motif, dimer, DN binding, transcription regulation; 2.00A {Bacillus anthracis}
Probab=92.15 E-value=0.53 Score=37.78 Aligned_cols=67 Identities=10% Similarity=0.144 Sum_probs=54.0
Q ss_pred chhHHHHHHHHHhcCCCcHHHHHHhcCCCHHHHHHHHHHHHhccccceecccCCCCCCCCCCCccEEEechhhHHHHh
Q 010353 19 GDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQPDGFADGPKANTQYVVLFDNILHRV 96 (512)
Q Consensus 19 G~~v~~V~~~Ll~~G~ltl~~I~~~t~l~~~~Vr~aL~vLIQhn~V~~~~~~~~~~~~~~~~~~~~Y~~~~~~il~rl 96 (512)
.|.--+|...|+.+|+.+..+|++.++++++.|.+-|-.|.+. +|.. ... + + ..+|.++.+.+-..+
T Consensus 26 ~~~Rl~IL~~l~~~~~~~~~ela~~l~is~stvs~hL~~L~~~-lv~~-~~~--g------r-~~~y~l~~~~~~~~~ 92 (99)
T 2zkz_A 26 HPMRLKIVNELYKHKALNVTQIIQILKLPQSTVSQHLCKMRGK-VLKR-NRQ--G------L-EIYYSINNPKVEGII 92 (99)
T ss_dssp SHHHHHHHHHHHHHSCEEHHHHHHHHTCCHHHHHHHHHHHBTT-TBEE-EEE--T------T-EEEEECCCHHHHHHH
T ss_pred CHHHHHHHHHHHHCCCcCHHHHHHHHCcCHHHHHHHHHHHHHH-hhhh-eEe--C------c-EEEEEEChHHHHHHH
Confidence 3556688888899999999999999999999999999999999 8873 322 1 1 478999977765443
No 32
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=92.15 E-value=1.3 Score=35.15 Aligned_cols=51 Identities=24% Similarity=0.355 Sum_probs=45.6
Q ss_pred hchhHHHHHHHHHhcCCCcHHHHHHhcCCCHHHHHHHHHHHHhccccceec
Q 010353 18 FGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFT 68 (512)
Q Consensus 18 FG~~v~~V~~~Ll~~G~ltl~~I~~~t~l~~~~Vr~aL~vLIQhn~V~~~~ 68 (512)
+.+.-..|..+|..+|++|..+|++.+++++..|...|-.|.+.|+|....
T Consensus 18 l~~~~~~il~~l~~~~~~s~~ela~~l~is~~tv~~~l~~L~~~glv~~~~ 68 (109)
T 1sfx_A 18 FKPSDVRIYSLLLERGGMRVSEIARELDLSARFVRDRLKVLLKRGFVRREI 68 (109)
T ss_dssp CCHHHHHHHHHHHHHCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEe
Confidence 346677889999889999999999999999999999999999999998433
No 33
>3eyi_A Z-DNA-binding protein 1; alternative splicing, DNA-binding, polymorphism, DNA binding protein/Z-DNA complex, DNA binding protein/DNA complex; 1.45A {Homo sapiens} PDB: 2l4m_A
Probab=91.93 E-value=0.19 Score=37.36 Aligned_cols=58 Identities=21% Similarity=0.304 Sum_probs=43.9
Q ss_pred HHHHHHHHhcCCCcchhhhhhhcCCC-cccHHHHHHHHhhcccceEEEEecCCCCCceEEEEEE
Q 010353 373 YRIFRLLSKSGRLLETDKISDTTFVE-KKDAPKILYKLWKDGYLLMEKLVVTGARQSQFLLWKV 435 (512)
Q Consensus 373 ~Ri~r~l~~~~~l~eek~i~~~ami~-~k~~r~~Ly~L~~~g~v~~QEvpk~~~~~~t~~lw~v 435 (512)
-+|+++|..+|.- .-=.|++...|. +||+-..||.|.+.|.+.+ +. ..+.+.+|-|.+
T Consensus 13 e~I~~fL~~~Gp~-~AL~IAK~LGlktAK~VNp~LY~m~~~~lL~~---De-k~~~W~iy~~~~ 71 (72)
T 3eyi_A 13 EDIYRFLKDNGPQ-RALVIAQALGMRTAKDVNRDLYRMKSRHLLDM---DE-QSKAWTIYRWTI 71 (72)
T ss_dssp HHHHHHHHHHCSE-EHHHHHHHTTCCSGGGTHHHHHHHHHTTSEEE---CT-TTCEEEEC----
T ss_pred HHHHHHHHHcCCc-hHHHHHHHhCcchhhhcCHHHHHHHHccCcCC---CC-CCCceeEEEeee
Confidence 4699999999877 777888877775 7899999999999999954 11 157889999975
No 34
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=91.75 E-value=0.9 Score=36.24 Aligned_cols=62 Identities=18% Similarity=0.215 Sum_probs=50.1
Q ss_pred chHHHHHHHHHhcCCCcchhhhhhhcCCCcccHHHHHHHHhhcccceEEEEecCCCCCceEEEEEEe
Q 010353 370 RDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTGARQSQFLLWKVN 436 (512)
Q Consensus 370 ~~~~Ri~r~l~~~~~l~eek~i~~~ami~~k~~r~~Ly~L~~~g~v~~QEvpk~~~~~~t~~lw~v~ 436 (512)
..-.+|+.+|...+.+ ...+|++...++...+...|.+|.+.|+|.-...| . .+..|++...
T Consensus 20 ~~~~~il~~l~~~~~~-s~~ela~~l~is~~tv~~~l~~L~~~glv~~~~~~-~---~r~~~~~~t~ 81 (109)
T 1sfx_A 20 PSDVRIYSLLLERGGM-RVSEIARELDLSARFVRDRLKVLLKRGFVRREIVE-K---GWVGYIYSAE 81 (109)
T ss_dssp HHHHHHHHHHHHHCCB-CHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEEE-S---SSEEEEEEEC
T ss_pred HHHHHHHHHHHHcCCC-CHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEeec-C---CceEEEEecC
Confidence 4457789999887887 99999999999999999999999999999877665 2 4445554443
No 35
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=91.69 E-value=0.21 Score=38.67 Aligned_cols=46 Identities=17% Similarity=0.350 Sum_probs=43.8
Q ss_pred hhHHHHHHHHHhcCCCcHHHHHHhcCCCHH-HHHHHHHHHHhccccc
Q 010353 20 DLVAKVCECLLRKGPLTRQNVKRYTELSDE-QVKNALLVLIQQNCVQ 65 (512)
Q Consensus 20 ~~v~~V~~~Ll~~G~ltl~~I~~~t~l~~~-~Vr~aL~vLIQhn~V~ 65 (512)
+.-.+|..+|..+|++|..+|++..+++.. .|+..|..|-.-|+|.
T Consensus 11 ~~~~~IL~~Lk~~g~~ta~eiA~~Lgit~~~aVr~hL~~Le~eGlV~ 57 (79)
T 1xmk_A 11 EIKEKICDYLFNVSDSSALNLAKNIGLTKARDINAVLIDMERQGDVY 57 (79)
T ss_dssp HHHHHHHHHHHHTCCEEHHHHHHHHCGGGHHHHHHHHHHHHHTTSEE
T ss_pred hHHHHHHHHHHHcCCcCHHHHHHHcCCCcHHHHHHHHHHHHHCCCEE
Confidence 457899999999999999999999999998 9999999999999997
No 36
>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP}
Probab=91.26 E-value=0.79 Score=37.98 Aligned_cols=69 Identities=9% Similarity=0.075 Sum_probs=53.9
Q ss_pred HHhhhchhHHHHHHHHHhcCCCcHHHHHHhcCCCHHHHHHHHHHHHhccccceecccCCCCCCCCCCCccEEEechhhHH
Q 010353 14 ITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQPDGFADGPKANTQYVVLFDNIL 93 (512)
Q Consensus 14 v~~~FG~~v~~V~~~Ll~~G~ltl~~I~~~t~l~~~~Vr~aL~vLIQhn~V~~~~~~~~~~~~~~~~~~~~Y~~~~~~il 93 (512)
++-.=.|.--+|...|. .|+++..+|++.++++.+.|.+-|-.|...|+|...... + ..+|+++.+.+-
T Consensus 12 ~~al~~~~R~~Il~~L~-~~~~~~~eLa~~l~is~~tvs~hL~~L~~~GlV~~~~~g---------r-~~~y~l~~~~~~ 80 (118)
T 3f6o_A 12 FQALADPTRRAVLGRLS-RGPATVSELAKPFDMALPSFMKHIHFLEDSGWIRTHKQG---------R-VRTCAIEKEPFT 80 (118)
T ss_dssp HHHHTSHHHHHHHHHHH-TCCEEHHHHHTTCCSCHHHHHHHHHHHHHTTSEEEEEET---------T-EEEEEECSHHHH
T ss_pred HHHhCCHHHHHHHHHHH-hCCCCHHHHHHHhCcCHHHHHHHHHHHHHCCCeEEEecC---------C-EEEEEECHHHHH
Confidence 33333466677888776 799999999999999999999999999999999832221 1 478999976644
No 37
>2lnb_A Z-DNA-binding protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, immune system; NMR {Homo sapiens}
Probab=90.59 E-value=0.26 Score=37.52 Aligned_cols=43 Identities=19% Similarity=0.404 Sum_probs=40.5
Q ss_pred HHHHHHHHhcCCCcchhhhhhhcCCCcccHHHHHHHHhhcccc
Q 010353 373 YRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYL 415 (512)
Q Consensus 373 ~Ri~r~l~~~~~l~eek~i~~~ami~~k~~r~~Ly~L~~~g~v 415 (512)
-+|+..|.+-|+-+...+|++.+.++.|++-+.+|+|-++|.|
T Consensus 22 ekVLe~LkeaG~PlkageIae~~GvdKKeVdKaik~LKkEgkI 64 (80)
T 2lnb_A 22 QRILQVLTEAGSPVKLAQLVKECQAPKRELNQVLYRMKKELKV 64 (80)
T ss_dssp HHHHHHHHHHTSCEEHHHHHHHHTSCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHCCCHHHHHHHHHHHHHcCCc
Confidence 4688899998888899999999999999999999999999998
No 38
>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19
Probab=90.45 E-value=0.11 Score=39.66 Aligned_cols=36 Identities=25% Similarity=0.273 Sum_probs=32.1
Q ss_pred CCCcchhhhhhhcCCCcccHHHHHHHHhhcccceEE
Q 010353 383 GRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLME 418 (512)
Q Consensus 383 ~~l~eek~i~~~ami~~k~~r~~Ly~L~~~g~v~~Q 418 (512)
|..+...+||+.-.++.+++.+.||+|++.|+|..+
T Consensus 27 ~~~~Ta~~IAkkLg~sK~~vNr~LY~L~kkG~V~~~ 62 (75)
T 1sfu_A 27 NDYTTAISLSNRLKINKKKINQQLYKLQKEDTVKMV 62 (75)
T ss_dssp TCEECHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CcchHHHHHHHHHCCCHHHHHHHHHHHHHCCCEecC
Confidence 443488999999999999999999999999999665
No 39
>3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=90.34 E-value=4.8 Score=34.43 Aligned_cols=115 Identities=14% Similarity=0.098 Sum_probs=64.3
Q ss_pred hCchHHHHHHHH-HhcCCCcchhhhhhhcCCCcccHHHHHHHHhhcccceEEEEecCCCCCceEEEEEEehHHHHHHHHH
Q 010353 368 YGRDAYRIFRLL-SKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTGARQSQFLLWKVNRQILWKHVLD 446 (512)
Q Consensus 368 ~G~~~~Ri~r~l-~~~~~l~eek~i~~~ami~~k~~r~~Ly~L~~~g~v~~QEvpk~~~~~~t~~lw~v~~~~~~~~~l~ 446 (512)
+...-.+|+.+| ...+.+ ...+|++...++...+-.++.+|.+.|||.-+.-|. ..|..+ +++... -..+++
T Consensus 45 l~~~~~~iL~~L~~~~~~~-~~~ela~~l~i~~~tvs~~l~~Le~~Gli~r~~~~~---d~R~~~-~~lT~~--G~~~~~ 117 (160)
T 3boq_A 45 LSLAKFDAMAQLARNPDGL-SMGKLSGALKVTNGNVSGLVNRLIKDGMVVKAMSAD---DRRSFS-AKLTDA--GLTTFK 117 (160)
T ss_dssp CCHHHHHHHHHHHHCTTCE-EHHHHHHHCSSCCSCHHHHHHHHHHHTSEEEC-----------CE-EEECHH--HHHHHH
T ss_pred CCHHHHHHHHHHHHcCCCC-CHHHHHHHHCCChhhHHHHHHHHHHCCCEEeecCCC---CCCeEE-EEEChh--HHHHHH
Confidence 444567888888 455666 999999999999999999999999999996543332 234433 334422 233344
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhcccccccCChhHHHHHHHHHHHHHHHHHHHhhhh
Q 010353 447 EMFHAALNLSLRVSYELDREKELLNLPADKRTGPLQDRYNRIRKVRILLESSQMKLD 503 (512)
Q Consensus 447 ~~~k~~~nl~~R~~~e~~~~k~ll~k~~~~~~~~e~~~l~~~~~~~~~L~~~~~rlD 503 (512)
.+.......... ++ ...+++|.+.+.++-..........+++|
T Consensus 118 ~~~~~~~~~~~~----------~~----~~l~~~e~~~l~~~l~~l~~~l~~~~~~d 160 (160)
T 3boq_A 118 QASEAHNRILAE----------LL----RAVSDQDMVEASAALRGILESMQTGASLD 160 (160)
T ss_dssp HHHHHHHHHHHH----------HT----TTCCHHHHHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHHH----------HH----hcCCHHHHHHHHHHHHHHHHHhhcccccC
Confidence 444333322221 22 12356777766665555554444444433
No 40
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=90.15 E-value=0.63 Score=35.79 Aligned_cols=49 Identities=14% Similarity=0.070 Sum_probs=41.9
Q ss_pred hhHHHHHHHHHhc--CCCcHHHHHHhc-----CCCHHHHHHHHHHHHhccccceec
Q 010353 20 DLVAKVCECLLRK--GPLTRQNVKRYT-----ELSDEQVKNALLVLIQQNCVQAFT 68 (512)
Q Consensus 20 ~~v~~V~~~Ll~~--G~ltl~~I~~~t-----~l~~~~Vr~aL~vLIQhn~V~~~~ 68 (512)
+--..|..+|... |++|..+|.... +++...|...|-.|.+.|+|.-..
T Consensus 17 ~~r~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Glv~~~~ 72 (83)
T 2fu4_A 17 LPRLKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIVTRHN 72 (83)
T ss_dssp HHHHHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEEEEE
T ss_pred HHHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCeEEEe
Confidence 4445688888876 689999999998 899999999999999999998433
No 41
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=90.06 E-value=5.8 Score=33.29 Aligned_cols=62 Identities=15% Similarity=0.145 Sum_probs=46.7
Q ss_pred HHHHHHHHh-cCCCcHHHHHHhcCCCHHHHHHHHHHHHhccccceecccCCCCCCCCCCCccEEEechhh
Q 010353 23 AKVCECLLR-KGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQPDGFADGPKANTQYVVLFDN 91 (512)
Q Consensus 23 ~~V~~~Ll~-~G~ltl~~I~~~t~l~~~~Vr~aL~vLIQhn~V~~~~~~~~~~~~~~~~~~~~Y~~~~~~ 91 (512)
-.|..+|.. .|++|..+|++.+++++..|...|-.|.+.|+|.-...+. + .+ ..+|.+...+
T Consensus 38 ~~iL~~l~~~~~~~~~~~la~~l~i~~~~vs~~l~~Le~~glv~r~~~~~-d-----~R-~~~~~lT~~G 100 (147)
T 2hr3_A 38 LVVLGAIDRLGGDVTPSELAAAERMRSSNLAALLRELERGGLIVRHADPQ-D-----GR-RTRVSLSSEG 100 (147)
T ss_dssp HHHHHHHHHTTSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEC-------------CCEEEECHHH
T ss_pred HHHHHHHHHcCCCCCHHHHHHHhCCChhhHHHHHHHHHHCCCEeeCCCCC-C-----CC-ceeeEECHHH
Confidence 457778888 8999999999999999999999999999999998433322 1 12 3456666544
No 42
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=89.98 E-value=0.5 Score=36.77 Aligned_cols=46 Identities=20% Similarity=0.286 Sum_probs=42.5
Q ss_pred hhHHHHHHHHHhcCCCcHHHHHHhcCCCHHHHHHHHHHHHhccccce
Q 010353 20 DLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQA 66 (512)
Q Consensus 20 ~~v~~V~~~Ll~~G~ltl~~I~~~t~l~~~~Vr~aL~vLIQhn~V~~ 66 (512)
+++.+|...|...| .|..+|++..+++...|++-|-.|.+-|+|.+
T Consensus 17 ~~~~~IL~lL~~~g-~sa~eLAk~LgiSk~aVr~~L~~Le~eG~I~~ 62 (82)
T 1oyi_A 17 EIVCEAIKTIGIEG-ATAAQLTRQLNMEKREVNKALYDLQRSAMVYS 62 (82)
T ss_dssp HHHHHHHHHHSSST-EEHHHHHHHSSSCHHHHHHHHHHHHHHTSSEE
T ss_pred HHHHHHHHHHHHcC-CCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEe
Confidence 57788888898878 99999999999999999999999999999984
No 43
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=89.91 E-value=3.6 Score=34.63 Aligned_cols=50 Identities=22% Similarity=0.244 Sum_probs=43.3
Q ss_pred hchhHHHHHHHHH-hcCCCcHHHHHHhcCCCHHHHHHHHHHHHhcccccee
Q 010353 18 FGDLVAKVCECLL-RKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAF 67 (512)
Q Consensus 18 FG~~v~~V~~~Ll-~~G~ltl~~I~~~t~l~~~~Vr~aL~vLIQhn~V~~~ 67 (512)
+.+....|..+|. ..|++|..+|++.++++++.|...|-.|.+.|+|...
T Consensus 24 l~~~~~~il~~L~~~~~~~t~~ela~~l~~~~stvs~~l~~L~~~G~v~r~ 74 (152)
T 1ku9_A 24 LNKSVGAVYAILYLSDKPLTISDIMEELKISKGNVSMSLKKLEELGFVRKV 74 (152)
T ss_dssp CCHHHHHHHHHHHHCSSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CChhHHHHHHHHHHcCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 3466667777875 5799999999999999999999999999999999843
No 44
>3f6v_A Possible transcriptional regulator, ARSR family protein; probable transcriptional repressor ARSR family, structural genomics, PSI-2; 1.48A {Rhodococcus SP}
Probab=89.89 E-value=0.83 Score=39.89 Aligned_cols=64 Identities=16% Similarity=0.143 Sum_probs=51.6
Q ss_pred chhHHHHHHHHHhcCCCcHHHHHHhcCCCHHHHHHHHHHHHhccccceecccCCCCCCCCCCCccEEEechhhHH
Q 010353 19 GDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQPDGFADGPKANTQYVVLFDNIL 93 (512)
Q Consensus 19 G~~v~~V~~~Ll~~G~ltl~~I~~~t~l~~~~Vr~aL~vLIQhn~V~~~~~~~~~~~~~~~~~~~~Y~~~~~~il 93 (512)
.+.--+|...|. .|++|..+|+..++++.+.|.+-|-+|...|+|.. ... + + ..+|.++...+-
T Consensus 57 ~p~R~~IL~~L~-~~~~t~~eLa~~lgls~stvs~hL~~L~~aGlV~~-~~~--G------r-~~~y~lt~~~~~ 120 (151)
T 3f6v_A 57 EPTRRRLVQLLT-SGEQTVNNLAAHFPASRSAISQHLRVLTEAGLVTP-RKD--G------R-FRYYRLDPQGLA 120 (151)
T ss_dssp SHHHHHHHHHGG-GCCEEHHHHHTTSSSCHHHHHHHHHHHHHTTSEEE-EEE--T------T-EEEEEECHHHHH
T ss_pred CHHHHHHHHHHH-hCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEE-Eec--C------C-EEEEEEChHHHH
Confidence 356667777776 89999999999999999999999999999999983 322 1 2 478999876544
No 45
>2l02_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=89.85 E-value=0.5 Score=36.53 Aligned_cols=51 Identities=24% Similarity=0.175 Sum_probs=48.0
Q ss_pred HhhhchhHHHHHHHHHhcCCCcHHHHHHhcCCCHHHHHHHHHHHHhccccc
Q 010353 15 TNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQ 65 (512)
Q Consensus 15 ~~~FG~~v~~V~~~Ll~~G~ltl~~I~~~t~l~~~~Vr~aL~vLIQhn~V~ 65 (512)
++.-|..|+.|-..|...|.+|+.+|.+.++++...+-.|+==|..-|=+.
T Consensus 3 k~~IG~nAG~VW~~L~~~~~~s~~el~k~t~l~d~el~lAIGWLaREdKI~ 53 (82)
T 2l02_A 3 KKIVGANAGKVWHALNEADGISIPELARKVNLSVESTALAVGWLARENKVV 53 (82)
T ss_dssp HHHHHHHHHHHHHHHHHCCSBCHHHHHHHHTCCHHHHHHHHHHHHTTTSEE
T ss_pred HHHHHHHHHHHHHHHhccCCCCHHHHHHHhCCCHHHHHHHHHHHhccCcee
Confidence 356799999999999999999999999999999999999999999999777
No 46
>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69
Probab=89.77 E-value=6.3 Score=31.99 Aligned_cols=65 Identities=11% Similarity=0.181 Sum_probs=50.4
Q ss_pred chhHHHHHHHHHhcCCCcHHHHHHhc-CCCHHHHHHHHHHHHhccccceecccCCCCCCCCCCCccEEEechhh
Q 010353 19 GDLVAKVCECLLRKGPLTRQNVKRYT-ELSDEQVKNALLVLIQQNCVQAFTTEQPDGFADGPKANTQYVVLFDN 91 (512)
Q Consensus 19 G~~v~~V~~~Ll~~G~ltl~~I~~~t-~l~~~~Vr~aL~vLIQhn~V~~~~~~~~~~~~~~~~~~~~Y~~~~~~ 91 (512)
|+..-.|...|. .|+++..+|.+.+ +++++.|-..|-.|.+.|+|.-...+. ++...+|.+-..+
T Consensus 21 ~~~~~~IL~~L~-~~~~~~~eLa~~l~~is~~tvs~~L~~Le~~GlI~r~~~~~-------d~r~~~~~LT~~G 86 (112)
T 1z7u_A 21 GKWKLSLMDELF-QGTKRNGELMRALDGITQRVLTDRLREMEKDGLVHRESFNE-------LPPRVEYTLTPEG 86 (112)
T ss_dssp STTHHHHHHHHH-HSCBCHHHHHHHSTTCCHHHHHHHHHHHHHHTSEEEEEECC-------SSCEEEEEECHHH
T ss_pred CccHHHHHHHHH-hCCCCHHHHHHHhccCCHHHHHHHHHHHHHCCCEEEeecCC-------CCCeEEEEECHhH
Confidence 344556777776 5999999999999 999999999999999999998443332 1225678887664
No 47
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=89.28 E-value=2.3 Score=36.35 Aligned_cols=48 Identities=13% Similarity=-0.045 Sum_probs=42.4
Q ss_pred hhHHHHHHHHHhcCCCcHHHHHHhcCCCHHHHHHHHHHHHhcccccee
Q 010353 20 DLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAF 67 (512)
Q Consensus 20 ~~v~~V~~~Ll~~G~ltl~~I~~~t~l~~~~Vr~aL~vLIQhn~V~~~ 67 (512)
+.--.|..+|..+|++|..+|++.++++++.|...|-.|.+.|+|.-.
T Consensus 47 ~~~~~iL~~l~~~~~~t~~ela~~l~~s~~tvs~~l~~Le~~glv~r~ 94 (153)
T 2pex_A 47 YPQYLVMLVLWETDERSVSEIGERLYLDSATLTPLLKRLQAAGLVTRT 94 (153)
T ss_dssp HHHHHHHHHHHHSCSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHhCCCcCHHHHHHHhCCCcccHHHHHHHHHHCCCEeec
Confidence 344567788888999999999999999999999999999999999843
No 48
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=89.15 E-value=0.69 Score=35.50 Aligned_cols=44 Identities=23% Similarity=0.228 Sum_probs=39.6
Q ss_pred HHHHHHHHhcCCCcchhhhhhhcCCCcccHHHHHHHHhhcccceE
Q 010353 373 YRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLM 417 (512)
Q Consensus 373 ~Ri~r~l~~~~~l~eek~i~~~ami~~k~~r~~Ly~L~~~g~v~~ 417 (512)
.+|+.+|...|.+ ...+|++...++...++..|..|.+.|+|.-
T Consensus 3 ~~Il~~L~~~~~~-s~~eLa~~lgvs~~tv~r~L~~L~~~GlI~~ 46 (81)
T 2htj_A 3 NEILEFLNRHNGG-KTAEIAEALAVTDYQARYYLLLLEKAGMVQR 46 (81)
T ss_dssp HHHHHHHHHSCCC-CHHHHHHHHTSCHHHHHHHHHHHHHHTSEEE
T ss_pred HHHHHHHHHcCCC-CHHHHHHHHCcCHHHHHHHHHHHHHCCCEEE
Confidence 3688888887777 9999999999999999999999999999953
No 49
>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69
Probab=89.04 E-value=2.3 Score=34.36 Aligned_cols=64 Identities=13% Similarity=0.159 Sum_probs=49.7
Q ss_pred hhHHHHHHHHHhcCCCcHHHHHHhc-CCCHHHHHHHHHHHHhccccceecccCCCCCCCCCCCccEEEechhh
Q 010353 20 DLVAKVCECLLRKGPLTRQNVKRYT-ELSDEQVKNALLVLIQQNCVQAFTTEQPDGFADGPKANTQYVVLFDN 91 (512)
Q Consensus 20 ~~v~~V~~~Ll~~G~ltl~~I~~~t-~l~~~~Vr~aL~vLIQhn~V~~~~~~~~~~~~~~~~~~~~Y~~~~~~ 91 (512)
+..-.|...|. .|++++.+|++.+ +++++.+-..|-.|.+.|+|.-...+. ++...+|++...+
T Consensus 14 ~~~~~IL~~L~-~~~~~~~eLa~~l~~is~~tls~~L~~Le~~GlI~r~~~~~-------d~r~~~y~LT~~G 78 (107)
T 2hzt_A 14 KWKXVILXHLT-HGKKRTSELKRLMPNITQKMLTQQLRELEADGVINRIVYNQ-------VPPKVEYELSEYG 78 (107)
T ss_dssp TTHHHHHHHHT-TCCBCHHHHHHHCTTSCHHHHHHHHHHHHHTTSEEEEEECS-------SSCEEEEEECTTG
T ss_pred ccHHHHHHHHH-hCCCCHHHHHHHhcCCCHHHHHHHHHHHHHCCCEEEeecCC-------CCCeEEEEECccH
Confidence 44456777775 8999999999999 999999999999999999998443332 1225678887654
No 50
>2vxz_A Pyrsv_GP04; viral protein, SSPF, ORF165A; 1.7A {Pyrobaculum spherical virus}
Probab=88.56 E-value=2 Score=37.08 Aligned_cols=74 Identities=20% Similarity=0.287 Sum_probs=58.6
Q ss_pred HHHHHHHHhcCCCcchhhhhhhcCCCcccHHHHHHHHhhcccceEEEEecCCCCCceEEEEEEehHHHHHHHHHHHHHHH
Q 010353 373 YRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTGARQSQFLLWKVNRQILWKHVLDEMFHAA 452 (512)
Q Consensus 373 ~Ri~r~l~~~~~l~eek~i~~~ami~~k~~r~~Ly~L~~~g~v~~QEvpk~~~~~~t~~lw~v~~~~~~~~~l~~~~k~~ 452 (512)
.+|+++|. .|.. ..-+|++...++-..|+-.||.|.++|.|. ||.++. .=+|.++.+ .+...+.++.+.+
T Consensus 14 ~~ILE~Lk-~G~~-~t~~Iak~LGlShg~aq~~Ly~LeREG~V~--~Vk~GK-----~ayw~L~~s-~y~~kV~dilrel 83 (165)
T 2vxz_A 14 RDILALLA-DGCK-TTSLIQQRLGLSHGRAKALIYVLEKEGRVT--RVAFGN-----VALVCLSMD-QYRQLVDGMIREV 83 (165)
T ss_dssp HHHHHHHT-TCCE-EHHHHHHHHTCCHHHHHHHHHHHHHTTSCE--EEEETT-----EEEEESCHH-HHHHHHHHHHHHH
T ss_pred HHHHHHHH-hCCc-cHHHHHHHhCCcHHHHHHHHHHHHhcCceE--EEEEcc-----EEEEEecHH-HHHHHHHHHHHHH
Confidence 46888888 8898 999999999999999999999999999994 455554 347999866 4444677777666
Q ss_pred HHHH
Q 010353 453 LNLS 456 (512)
Q Consensus 453 ~nl~ 456 (512)
..++
T Consensus 84 ~~~l 87 (165)
T 2vxz_A 84 ERLV 87 (165)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6554
No 51
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=88.48 E-value=0.84 Score=35.13 Aligned_cols=44 Identities=11% Similarity=0.120 Sum_probs=41.1
Q ss_pred HHHHHHHHhcCCCcHHHHHHhcCCCHHHHHHHHHHHHhccccce
Q 010353 23 AKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQA 66 (512)
Q Consensus 23 ~~V~~~Ll~~G~ltl~~I~~~t~l~~~~Vr~aL~vLIQhn~V~~ 66 (512)
..|-+.|-.+|..++.+|++..++++..||.-|-.|.+.|.|.-
T Consensus 5 ~~Il~~L~~~g~vsv~eLa~~l~VS~~TIRrdL~~Le~~G~l~R 48 (78)
T 1xn7_A 5 IQVRDLLALRGRMEAAQISQTLNTPQPMINAMLQQLESMGKAVR 48 (78)
T ss_dssp HHHHHHHHHSCSBCHHHHHHHTTCCHHHHHHHHHHHHHHTSEEE
T ss_pred HHHHHHHHHcCCCcHHHHHHHHCcCHHHHHHHHHHHHHCCCEEE
Confidence 46788999999999999999999999999999999999999973
No 52
>2l02_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=88.39 E-value=0.62 Score=36.00 Aligned_cols=55 Identities=11% Similarity=0.206 Sum_probs=50.6
Q ss_pred HHHhCchHHHHHHHHHhcCCCcchhhhhhhcCCCcccHHHHHHHHhhcccceEEEE
Q 010353 365 SKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKL 420 (512)
Q Consensus 365 ~~~~G~~~~Ri~r~l~~~~~l~eek~i~~~ami~~k~~r~~Ly~L~~~g~v~~QEv 420 (512)
.+..|..|..||++|...+.+ +-++|.+.+.++.+|+--.+-=|.++|=|.+++.
T Consensus 3 k~~IG~nAG~VW~~L~~~~~~-s~~el~k~t~l~d~el~lAIGWLaREdKI~~~~~ 57 (82)
T 2l02_A 3 KKIVGANAGKVWHALNEADGI-SIPELARKVNLSVESTALAVGWLARENKVVIERK 57 (82)
T ss_dssp HHHHHHHHHHHHHHHHHCCSB-CHHHHHHHHTCCHHHHHHHHHHHHTTTSEEEEEE
T ss_pred HHHHHHHHHHHHHHHhccCCC-CHHHHHHHhCCCHHHHHHHHHHHhccCceeEEee
Confidence 356799999999999998766 9999999999999999999999999999999884
No 53
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=88.37 E-value=3.2 Score=34.56 Aligned_cols=49 Identities=16% Similarity=0.144 Sum_probs=43.6
Q ss_pred chhHHHHHHHHHhcCCCcHHHHHHhcCCCHHHHHHHHHHHHhcccccee
Q 010353 19 GDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAF 67 (512)
Q Consensus 19 G~~v~~V~~~Ll~~G~ltl~~I~~~t~l~~~~Vr~aL~vLIQhn~V~~~ 67 (512)
.+.--.|..+|..+|++|..+|++..+++++.|...|-.|.+.|+|.-.
T Consensus 37 ~~~~~~iL~~l~~~~~~t~~ela~~l~~~~~tvs~~l~~L~~~glv~r~ 85 (140)
T 2nnn_A 37 TPTQWAALVRLGETGPCPQNQLGRLTAMDAATIKGVVERLDKRGLIQRS 85 (140)
T ss_dssp CHHHHHHHHHHHHHSSBCHHHHHHHTTCCHHHHHHHHHHHHHTTCEEEE
T ss_pred CHHHHHHHHHHHHcCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEee
Confidence 3455678888888999999999999999999999999999999999843
No 54
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=88.35 E-value=9.8 Score=31.50 Aligned_cols=49 Identities=6% Similarity=0.047 Sum_probs=42.9
Q ss_pred hhHHHHHHHHHhcC--CCcHHHHHHhcCCCHHHHHHHHHHHHhccccceec
Q 010353 20 DLVAKVCECLLRKG--PLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFT 68 (512)
Q Consensus 20 ~~v~~V~~~Ll~~G--~ltl~~I~~~t~l~~~~Vr~aL~vLIQhn~V~~~~ 68 (512)
+.-..|..+|..+| ++|..+|++.+++++..|...|-.|.+.|+|.-..
T Consensus 34 ~~~~~iL~~l~~~~~~~~~~~ela~~l~~~~~tvs~~l~~Le~~Gli~r~~ 84 (141)
T 3bro_A 34 GTQMTIIDYLSRNKNKEVLQRDLESEFSIKSSTATVLLQRMEIKKLLYRKV 84 (141)
T ss_dssp HHHHHHHHHHHHTTTSCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHHHCCCCCcCHHHHHHHHCCCcchHHHHHHHHHHCCCEEeeC
Confidence 44556788888888 89999999999999999999999999999998433
No 55
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=88.31 E-value=4.7 Score=33.74 Aligned_cols=67 Identities=6% Similarity=-0.016 Sum_probs=51.6
Q ss_pred hchhHHHHHHHHHhcCCCcHHHHHHhcCCCHHHHHHHHHHHHhccccceecccCCCCCCCCCCCccEEEechhh
Q 010353 18 FGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQPDGFADGPKANTQYVVLFDN 91 (512)
Q Consensus 18 FG~~v~~V~~~Ll~~G~ltl~~I~~~t~l~~~~Vr~aL~vLIQhn~V~~~~~~~~~~~~~~~~~~~~Y~~~~~~ 91 (512)
+.+.--.|..+|..+|++|..+|++.++++++.|...|-.|.+.|+|.-...+. + +...+|.+...+
T Consensus 27 lt~~~~~iL~~l~~~~~~t~~~la~~l~~s~~~vs~~l~~Le~~gli~r~~~~~-d------~R~~~~~lT~~G 93 (144)
T 1lj9_A 27 LTRGQYLYLVRVCENPGIIQEKIAELIKVDRTTAARAIKRLEEQGFIYRQEDAS-N------KKIKRIYATEKG 93 (144)
T ss_dssp CTTTHHHHHHHHHHSTTEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECSS-C------TTCEEEEECHHH
T ss_pred CCHHHHHHHHHHHHCcCcCHHHHHHHHCCCHhHHHHHHHHHHHCCCEEeecCCC-C------CceeeeEEChhH
Confidence 334556788888899999999999999999999999999999999998443332 1 223566666544
No 56
>2p4w_A Transcriptional regulatory protein ARSR family; archaea, PHR, heat shock, transcriptional regulation, winged DNA binding; 2.60A {Pyrococcus furiosus} SCOP: a.4.5.64
Probab=88.25 E-value=1.4 Score=40.54 Aligned_cols=69 Identities=14% Similarity=0.184 Sum_probs=52.9
Q ss_pred chhHHHHHHHHHhcCCCcHHHHHHhcCCCHHHHHHHHHHHHhccccceecccCCCCCCCCCCCccEEEechhhHH
Q 010353 19 GDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQPDGFADGPKANTQYVVLFDNIL 93 (512)
Q Consensus 19 G~~v~~V~~~Ll~~G~ltl~~I~~~t~l~~~~Vr~aL~vLIQhn~V~~~~~~~~~~~~~~~~~~~~Y~~~~~~il 93 (512)
++.--.|...| ..|+++..+|++.++++++.|...|-.|...|+|.....+.++ ++...+|+++.+...
T Consensus 14 ~~~rl~IL~~L-~~~~~s~~eLa~~l~is~stvs~hLk~Le~~GLV~~~~~~~~~-----g~~~~~Y~Lt~~~~~ 82 (202)
T 2p4w_A 14 NETRRRILFLL-TKRPYFVSELSRELGVGQKAVLEHLRILEEAGLIESRVEKIPR-----GRPRKYYMIKKGLRL 82 (202)
T ss_dssp SHHHHHHHHHH-HHSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECCBTT-----BCCCEEEEECTTEEE
T ss_pred CHHHHHHHHHH-HhCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCceEEEeeccCC-----CCceEEEEEChHHHH
Confidence 45666777777 6899999999999999999999999999999999854332211 123568888766544
No 57
>2vxz_A Pyrsv_GP04; viral protein, SSPF, ORF165A; 1.7A {Pyrobaculum spherical virus}
Probab=88.19 E-value=2.4 Score=36.53 Aligned_cols=91 Identities=13% Similarity=0.130 Sum_probs=62.4
Q ss_pred HHHHHHHHhcCCCcHHHHHHhcCCCHHHHHHHHHHHHhccccceecccCCCCCCCCCCCccEEEechhhHHHHhchhhHH
Q 010353 23 AKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQPDGFADGPKANTQYVVLFDNILHRVRFAKFL 102 (512)
Q Consensus 23 ~~V~~~Ll~~G~ltl~~I~~~t~l~~~~Vr~aL~vLIQhn~V~~~~~~~~~~~~~~~~~~~~Y~~~~~~il~rlR~pr~l 102 (512)
.+|.++|- .|+.|..+|++.+|+|.++++..|-+|-.-|+|.-.... ...+..++.+ .|+
T Consensus 14 ~~ILE~Lk-~G~~~t~~Iak~LGlShg~aq~~Ly~LeREG~V~~Vk~G----------K~ayw~L~~s---------~y~ 73 (165)
T 2vxz_A 14 RDILALLA-DGCKTTSLIQQRLGLSHGRAKALIYVLEKEGRVTRVAFG----------NVALVCLSMD---------QYR 73 (165)
T ss_dssp HHHHHHHT-TCCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSCEEEEET----------TEEEEESCHH---------HHH
T ss_pred HHHHHHHH-hCCccHHHHHHHhCCcHHHHHHHHHHHHhcCceEEEEEc----------cEEEEEecHH---------HHH
Confidence 46778888 999999999999999999999999999999999733322 1455566544 333
Q ss_pred HHHHHHhhhhHHHHHHHHHHccc--CCHHHHHHHHhh
Q 010353 103 TILSQEFDQQCVELVQGLLEHGR--LTLKQMFDRAKS 137 (512)
Q Consensus 103 ~~i~~~~G~~a~~Iv~~lL~~G~--l~~~~li~~~~~ 137 (512)
+.|. +.-.++-..|-.+|. ++++++..-+..
T Consensus 74 ~kV~----dilrel~~~l~s~gvk~i~p~~l~~li~~ 106 (165)
T 2vxz_A 74 QLVD----GMIREVERLVTTNKLKFISPPRLHDLIIK 106 (165)
T ss_dssp HHHH----HHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred HHHH----HHHHHHHHHHHHcCCeeeCcHHHHHHHHh
Confidence 3222 222333344444554 567777766654
No 58
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=88.18 E-value=5.6 Score=32.90 Aligned_cols=65 Identities=9% Similarity=0.075 Sum_probs=50.6
Q ss_pred hhHHHHHHHHHhcCCCcHHHHHHhcCCCHHHHHHHHHHHHhccccceecccCCCCCCCCCCCccEEEechhh
Q 010353 20 DLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQPDGFADGPKANTQYVVLFDN 91 (512)
Q Consensus 20 ~~v~~V~~~Ll~~G~ltl~~I~~~t~l~~~~Vr~aL~vLIQhn~V~~~~~~~~~~~~~~~~~~~~Y~~~~~~ 91 (512)
+.-..|..+|..+|++|..+|++.++++++.|...|-.|.+.|+|.....+. + +...+|.+...+
T Consensus 33 ~~~~~iL~~l~~~~~~~~~ela~~l~~~~~tvs~~l~~L~~~gli~r~~~~~-d------~r~~~~~lT~~G 97 (139)
T 3bja_A 33 YVQFGVIQVLAKSGKVSMSKLIENMGCVPSNMTTMIQRMKRDGYVMTEKNPN-D------QRETLVYLTKKG 97 (139)
T ss_dssp HHHHHHHHHHHHSCSEEHHHHHHHCSSCCTTHHHHHHHHHHTTSEEEEECSS-C------TTCEEEEECHHH
T ss_pred HHHHHHHHHHHHcCCcCHHHHHHHHCCChhHHHHHHHHHHHCCCeeeccCCC-C------CceeEEEECHHH
Confidence 4555688888889999999999999999999999999999999998443332 1 223566666544
No 59
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=87.93 E-value=6.8 Score=33.35 Aligned_cols=66 Identities=12% Similarity=0.073 Sum_probs=50.7
Q ss_pred chhHHHHHHHHHhcCCCcHHHHHHhcCCCHHHHHHHHHHHHhccccceecccCCCCCCCCCCCccEEEechhh
Q 010353 19 GDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQPDGFADGPKANTQYVVLFDN 91 (512)
Q Consensus 19 G~~v~~V~~~Ll~~G~ltl~~I~~~t~l~~~~Vr~aL~vLIQhn~V~~~~~~~~~~~~~~~~~~~~Y~~~~~~ 91 (512)
.+.-..|..+|..+|++|..+|++.++++...|...|-.|.+.|+|.....+. + +...+|.+...+
T Consensus 43 t~~~~~iL~~l~~~~~~t~~ela~~l~is~~tvs~~l~~Le~~Gli~r~~~~~-d------~R~~~~~lT~~G 108 (154)
T 2eth_A 43 KTTELYAFLYVALFGPKKMKEIAEFLSTTKSNVTNVVDSLEKRGLVVREMDPV-D------RRTYRVVLTEKG 108 (154)
T ss_dssp BHHHHHHHHHHHHHCCBCHHHHHHHTTSCHHHHHHHHHHHHHTTSEEEEECTT-T------SSCEEEEECHHH
T ss_pred CHHHHHHHHHHHHcCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeeCCCC-C------cceeEEEECHHH
Confidence 34455688888889999999999999999999999999999999998433332 1 223456666443
No 60
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=87.90 E-value=4.2 Score=33.77 Aligned_cols=51 Identities=8% Similarity=0.126 Sum_probs=44.7
Q ss_pred hchhHHHHHHHHHhcCCCcHHHHHHhcCCCHHHHHHHHHHHHhccccceec
Q 010353 18 FGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFT 68 (512)
Q Consensus 18 FG~~v~~V~~~Ll~~G~ltl~~I~~~t~l~~~~Vr~aL~vLIQhn~V~~~~ 68 (512)
+.+.--.|..+|..+|++|..+|++.++++++.|...|-.|.+.|+|.-..
T Consensus 27 l~~~~~~iL~~l~~~~~~~~~ela~~l~~s~~tvs~~l~~L~~~glv~~~~ 77 (138)
T 3bpv_A 27 LTDAQVACLLRIHREPGIKQDELATFFHVDKGTIARTLRRLEESGFIEREQ 77 (138)
T ss_dssp CCHHHHHHHHHHHHSTTCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeec
Confidence 335566788888889999999999999999999999999999999998433
No 61
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=87.88 E-value=1.3 Score=35.08 Aligned_cols=45 Identities=20% Similarity=0.274 Sum_probs=40.4
Q ss_pred chhHHHHHHHHHhcCCCcHHHHHHhcCCCHHHHHHHHHHHHhccccc
Q 010353 19 GDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQ 65 (512)
Q Consensus 19 G~~v~~V~~~Ll~~G~ltl~~I~~~t~l~~~~Vr~aL~vLIQhn~V~ 65 (512)
.+.-..|...| .|+++..+|++.++++.+.|...|-.|.+.|+|.
T Consensus 30 ~~~r~~Il~~L--~~~~~~~eLa~~l~is~~tv~~~L~~L~~~Glv~ 74 (96)
T 1y0u_A 30 NPVRRKILRML--DKGRSEEEIMQTLSLSKKQLDYHLKVLEAGFCIE 74 (96)
T ss_dssp CHHHHHHHHHH--HTTCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred CHHHHHHHHHH--cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEE
Confidence 45556777877 7899999999999999999999999999999997
No 62
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=87.81 E-value=5.7 Score=33.19 Aligned_cols=50 Identities=14% Similarity=0.062 Sum_probs=43.3
Q ss_pred chhHHHHHHHH-HhcCCCcHHHHHHhcCCCHHHHHHHHHHHHhccccceec
Q 010353 19 GDLVAKVCECL-LRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFT 68 (512)
Q Consensus 19 G~~v~~V~~~L-l~~G~ltl~~I~~~t~l~~~~Vr~aL~vLIQhn~V~~~~ 68 (512)
.+.-..|..+| ...|++|..+|++.++++++.|...|-.|.+.|+|....
T Consensus 36 ~~~~~~iL~~l~~~~~~~t~~~la~~l~~s~~~vs~~l~~L~~~glv~r~~ 86 (146)
T 2fbh_A 36 SQARWLVLLHLARHRDSPTQRELAQSVGVEGPTLARLLDGLESQGLVRRLA 86 (146)
T ss_dssp TTTHHHHHHHHHHCSSCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred CHHHHHHHHHHHHcCCCCCHHHHHHHhCCChhhHHHHHHHHHHCCCeeecC
Confidence 35556678888 678999999999999999999999999999999998433
No 63
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=87.80 E-value=0.92 Score=35.20 Aligned_cols=45 Identities=13% Similarity=0.196 Sum_probs=41.9
Q ss_pred hHHHHHHHHHhcC---CCcHHHHHHhcCCCHHHHHHHHHHHHhccccc
Q 010353 21 LVAKVCECLLRKG---PLTRQNVKRYTELSDEQVKNALLVLIQQNCVQ 65 (512)
Q Consensus 21 ~v~~V~~~Ll~~G---~ltl~~I~~~t~l~~~~Vr~aL~vLIQhn~V~ 65 (512)
.-.+|...|...| ++|..+|++.++++.+.|+..|..|..-|+|.
T Consensus 11 ~~~~IL~~L~~~~pg~~~t~~eLA~~Lgvsr~tV~~~L~~Le~~G~I~ 58 (81)
T 1qbj_A 11 QEQRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLYSLAKKGKLQ 58 (81)
T ss_dssp HHHHHHHHHHHHCTTCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEE
Confidence 3467889999999 99999999999999999999999999999997
No 64
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=87.73 E-value=3.9 Score=33.98 Aligned_cols=66 Identities=14% Similarity=0.064 Sum_probs=50.3
Q ss_pred chhHHHHHHHHHhcCCCcHHHHHHhcCCCHHHHHHHHHHHHhccccceecccCCCCCCCCCCCccEEEechhh
Q 010353 19 GDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQPDGFADGPKANTQYVVLFDN 91 (512)
Q Consensus 19 G~~v~~V~~~Ll~~G~ltl~~I~~~t~l~~~~Vr~aL~vLIQhn~V~~~~~~~~~~~~~~~~~~~~Y~~~~~~ 91 (512)
.+.-..|...|..+|++|..+|++.++++++.|...+-.|.+.|+|.-...+. + +-..+|.+...+
T Consensus 33 t~~~~~iL~~l~~~~~~~~~~la~~l~~~~~tvs~~l~~L~~~gli~r~~~~~-d------~R~~~~~lT~~G 98 (138)
T 1jgs_A 33 TAAQFKVLCSIRCAACITPVELKKVLSVDLGALTRMLDRLVCKGWVERLPNPN-D------KRGVLVKLTTGG 98 (138)
T ss_dssp CHHHHHHHHHHHHHSSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECTT-C------SSCEEEEECHHH
T ss_pred CHHHHHHHHHHHhcCCCCHHHHHHHHCCChHHHHHHHHHHHHCCCEEecCCcc-c------CceeEeEEChhH
Confidence 34455678888888999999999999999999999999999999998433322 2 223556666543
No 65
>3lmm_A Uncharacterized protein; multi-domained alpha-beta protein, structural genomics, PSI- 2, protein structure initiative; 3.00A {Corynebacterium diphtheriae}
Probab=87.67 E-value=0.91 Score=48.72 Aligned_cols=124 Identities=19% Similarity=0.094 Sum_probs=49.4
Q ss_pred hHHHHHHHHHhcCCCcHHHHHHhcCCCHHHHHHHHHHHHh-----ccccceecccCCCCCCCCCCCccEEEechhhHHHH
Q 010353 21 LVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQ-----QNCVQAFTTEQPDGFADGPKANTQYVVLFDNILHR 95 (512)
Q Consensus 21 ~v~~V~~~Ll~~G~ltl~~I~~~t~l~~~~Vr~aL~vLIQ-----hn~V~~~~~~~~~~~~~~~~~~~~Y~~~~~~il~r 95 (512)
.-..|..+|..++.+|..+|...++++..+++..|-.|.+ .+++... + ..|.++.. ++..
T Consensus 431 ~~~~iL~~l~~~~~it~~~la~~l~~s~~~~~~~L~~L~~~~~~~~glie~~-----g---------~~y~L~~~-~~~~ 495 (583)
T 3lmm_A 431 RIAIVLYLLFQRPFITIDVVARGLQSGKEAARNALEAARQTTVAGAPLIIAH-----D---------GVWLLGNA-CREI 495 (583)
T ss_dssp HHHHHHHHHHHSSSBCHHHHHHHHTSCHHHHHHHHHHHHTCEETTEESEEEE-----T---------TEEEECHH-HHHH
T ss_pred hHHHHHHHHHHCCCcCHHHHHHHhCcCHHHHHHHHHHHHhhhccccceEEEe-----C---------CEEEECHH-HHHH
Confidence 3457889999999999999999999999999999999999 7788621 1 25888754 4444
Q ss_pred hch----hhH-HHHHHHHhhhhHHHHHHHHHHcccCCHHHHHHHHhhcccCCCccCHHHHHHHHHHHHhcccccccC
Q 010353 96 VRF----AKF-LTILSQEFDQQCVELVQGLLEHGRLTLKQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCP 167 (512)
Q Consensus 96 lR~----pr~-l~~i~~~~G~~a~~Iv~~lL~~G~l~~~~li~~~~~~~~~~~~~~~~~l~~~f~~Lv~~~fi~rv~ 167 (512)
+.- +.| +......--..-..|++.|-.+|.+|..++.+.+.- +..++...+.+|+..|.|++..
T Consensus 496 ~~~~~~~~~~~~~~~~~~~~~~~~~I~~~l~~~g~it~~di~~l~~l--------s~~qa~~~L~~Lv~~G~l~~~G 564 (583)
T 3lmm_A 496 LRKVEPSPFSPVRYLSTDQAELTNAAMLWLSEVGDLATSDLMAMCGV--------SRGTAKACVDGLVDEERVVAVG 564 (583)
T ss_dssp HTSCC------------------------------------------------------------------------
T ss_pred hcccccccccccccccCChhHHHHHHHHHHHHcCCcCHHHHHHHHCC--------CHHHHHHHHHHHHHCCcEEEeC
Confidence 432 222 111111111112457777778999999999886532 4566899999999999997763
No 66
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=87.45 E-value=4.9 Score=34.52 Aligned_cols=65 Identities=12% Similarity=0.085 Sum_probs=49.7
Q ss_pred hhHHHHHHHHHhcCCCcHHHHHHhcCCCHHHHHHHHHHHHhccccceecccCCCCCCCCCCCccEEEechhh
Q 010353 20 DLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQPDGFADGPKANTQYVVLFDN 91 (512)
Q Consensus 20 ~~v~~V~~~Ll~~G~ltl~~I~~~t~l~~~~Vr~aL~vLIQhn~V~~~~~~~~~~~~~~~~~~~~Y~~~~~~ 91 (512)
+.--.|..+|..+|++|..+|++.+++++..|...|-.|.+.|+|.-...+. + .+ ..+|.+...+
T Consensus 52 ~~~~~iL~~l~~~~~~t~~ela~~l~is~~tvs~~l~~Le~~Gli~r~~~~~-d-----~R-~~~~~lT~~G 116 (162)
T 3cjn_A 52 TAKMRALAILSAKDGLPIGTLGIFAVVEQSTLSRALDGLQADGLVRREVDSD-D-----QR-SSRVYLTPAG 116 (162)
T ss_dssp HHHHHHHHHHHHSCSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEC---C-----CS-SEEEEECHHH
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHCCChhHHHHHHHHHHHCCCEEecCCCC-C-----CC-eeEEEECHHH
Confidence 4455688888889999999999999999999999999999999998433332 1 12 3556666543
No 67
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=87.43 E-value=2.4 Score=35.78 Aligned_cols=46 Identities=17% Similarity=0.283 Sum_probs=41.0
Q ss_pred hhHHHHHHHHHhcCCCcHHHHHHhcCCCHHHHHHHHHHHHhccccce
Q 010353 20 DLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQA 66 (512)
Q Consensus 20 ~~v~~V~~~Ll~~G~ltl~~I~~~t~l~~~~Vr~aL~vLIQhn~V~~ 66 (512)
+.=-.|..+|..+| +|..+|++.++++++.|...|-.|.+.|+|.-
T Consensus 38 ~~~~~iL~~l~~~~-~t~~eLa~~l~~s~~tvs~~l~~L~~~Glv~r 83 (146)
T 3tgn_A 38 NTQEHILMLLSEES-LTNSELARRLNVSQAAVTKAIKSLVKEGMLET 83 (146)
T ss_dssp HHHHHHHHHHTTCC-CCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEC
T ss_pred HHHHHHHHHHHhCC-CCHHHHHHHHCCCHHHHHHHHHHHHHCCCeEe
Confidence 34456778888888 99999999999999999999999999999984
No 68
>2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus}
Probab=87.31 E-value=0.65 Score=33.10 Aligned_cols=45 Identities=24% Similarity=0.422 Sum_probs=40.5
Q ss_pred HHHHHHHhcCCCcchhhhhhhcCCCcccHHHHHHHHhhcccceEE
Q 010353 374 RIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLME 418 (512)
Q Consensus 374 Ri~r~l~~~~~l~eek~i~~~ami~~k~~r~~Ly~L~~~g~v~~Q 418 (512)
.|+..++.+|..++-+.+++.-.++..++-.+|.+|.+.|+|.+.
T Consensus 14 ~lL~yIr~sGGildI~~~a~kygV~kdeV~~~LrrLe~KGLI~le 58 (59)
T 2xvc_A 14 ELLDYIVNNGGFLDIEHFSKVYGVEKQEVVKLLEALKNKGLIAVE 58 (59)
T ss_dssp HHHHHHHHTTSEEEHHHHHHHHCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHcCCEEeHHHHHHHhCCCHHHHHHHHHHHHHCCCeecc
Confidence 366777888887899999999999999999999999999999874
No 69
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=87.09 E-value=3.9 Score=34.56 Aligned_cols=49 Identities=14% Similarity=0.072 Sum_probs=43.1
Q ss_pred hhHHHHHHHHHhcCCCcHHHHHHhcCCCHHHHHHHHHHHHhccccceec
Q 010353 20 DLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFT 68 (512)
Q Consensus 20 ~~v~~V~~~Ll~~G~ltl~~I~~~t~l~~~~Vr~aL~vLIQhn~V~~~~ 68 (512)
+.--.|..+|..+|++|..+|++.+++++..|...|-.|.+.|+|....
T Consensus 42 ~~~~~iL~~l~~~~~~t~~ela~~l~~~~~tvs~~l~~Le~~Glv~r~~ 90 (150)
T 2rdp_A 42 PPQFVALQWLLEEGDLTVGELSNKMYLACSTTTDLVDRMERNGLVARVR 90 (150)
T ss_dssp HHHHHHHHHHHHHCSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHCCCchhHHHHHHHHHHCCCeeecC
Confidence 4445677888889999999999999999999999999999999998433
No 70
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=87.07 E-value=4.1 Score=34.15 Aligned_cols=51 Identities=8% Similarity=0.066 Sum_probs=44.3
Q ss_pred hchhHHHHHHHHHhcCCCcHHHHHHhcCCCHHHHHHHHHHHHhccccceec
Q 010353 18 FGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFT 68 (512)
Q Consensus 18 FG~~v~~V~~~Ll~~G~ltl~~I~~~t~l~~~~Vr~aL~vLIQhn~V~~~~ 68 (512)
+.+.--.|..+|..+|++|..+|++.++++++.|...|-.|.+.|+|.-..
T Consensus 31 l~~~~~~iL~~l~~~~~~~~~~la~~l~~s~~tvs~~l~~L~~~glv~r~~ 81 (145)
T 2a61_A 31 ITPAQFDILQKIYFEGPKRPGELSVLLGVAKSTVTGLVKRLEADGYLTRTP 81 (145)
T ss_dssp CCHHHHHHHHHHHHHCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHHHCCCchhHHHHHHHHHHCCCeeecC
Confidence 335556688888889999999999999999999999999999999998433
No 71
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=87.00 E-value=3.6 Score=34.30 Aligned_cols=51 Identities=12% Similarity=0.167 Sum_probs=44.3
Q ss_pred hchhHHHHHHHHHhcCCCcHHHHHHhcCCCHHHHHHHHHHHHhccccceec
Q 010353 18 FGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFT 68 (512)
Q Consensus 18 FG~~v~~V~~~Ll~~G~ltl~~I~~~t~l~~~~Vr~aL~vLIQhn~V~~~~ 68 (512)
+.+.-..|...|..+|++|..+|++.++++++.|...|-.|.+.|+|....
T Consensus 34 lt~~~~~iL~~l~~~~~~t~~ela~~l~~s~~~vs~~l~~Le~~glv~r~~ 84 (142)
T 2fbi_A 34 LTEQQWRVIRILRQQGEMESYQLANQACILRPSMTGVLARLERDGIVRRWK 84 (142)
T ss_dssp CCHHHHHHHHHHHHHCSEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHHHCCCHhHHHHHHHHHHHCCCEEeec
Confidence 335556688888889999999999999999999999999999999998443
No 72
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=86.99 E-value=2.2 Score=33.89 Aligned_cols=67 Identities=10% Similarity=0.118 Sum_probs=46.6
Q ss_pred CchHHHHHHHHHh-cCCCcchhhhhhhcCCCcccHHHHHHHHhhcccceEEEEecCCCCCceEEEEEEeh
Q 010353 369 GRDAYRIFRLLSK-SGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTGARQSQFLLWKVNR 437 (512)
Q Consensus 369 G~~~~Ri~r~l~~-~~~l~eek~i~~~ami~~k~~r~~Ly~L~~~g~v~~QEvpk~~~~~~t~~lw~v~~ 437 (512)
...-.+++..+.. ++.+ ...+|++...++...+...|..|.+.|||.-...+.. ..++..++|.++.
T Consensus 20 ~~~~~~~l~~l~~~~~~~-t~~ela~~l~is~~tv~~~l~~L~~~g~v~~~~~~~~-~~gr~~~~~~l~~ 87 (109)
T 2d1h_A 20 TDTDVAVLLKMVEIEKPI-TSEELADIFKLSKTTVENSLKKLIELGLVVRTKTEGK-KIGRPKYYYSISS 87 (109)
T ss_dssp CHHHHHHHHHHHHHCSCE-EHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEC--------CCEEEEECT
T ss_pred CHHHHHHHHHHHHcCCCC-CHHHHHHHHCcCHHHHHHHHHHHHHCCCeEeeccccC-CCCCCCeeeecCH
Confidence 3444556555555 6667 9999999999999999999999999999976544332 2344456667765
No 73
>2hye_C Cullin-4A, CUL-4A; beta propeller, ring finger, zinc finger, propeller cluster, helical repeats, cullin repeats, protein binding; HET: DNA; 3.10A {Homo sapiens} SCOP: a.4.5.34 a.118.17.1 e.40.1.1 PDB: 4a0k_A* 4a0c_C 4a0l_E*
Probab=86.91 E-value=2.3 Score=47.11 Aligned_cols=128 Identities=13% Similarity=0.172 Sum_probs=86.1
Q ss_pred cCCCcHHHHHHhcCCCHHHHHHHHHHHH--hccccceecccCCCCCCCCCCCccEEEechh--hHHHHhchhhHH-----
Q 010353 32 KGPLTRQNVKRYTELSDEQVKNALLVLI--QQNCVQAFTTEQPDGFADGPKANTQYVVLFD--NILHRVRFAKFL----- 102 (512)
Q Consensus 32 ~G~ltl~~I~~~t~l~~~~Vr~aL~vLI--Qhn~V~~~~~~~~~~~~~~~~~~~~Y~~~~~--~il~rlR~pr~l----- 102 (512)
...+|+.+|...|+++...++.+|..|+ +.+++. ..+.. .. -.....|.+|.+ .-..+++.+.+-
T Consensus 605 ~~~lt~~ei~~~t~i~~~~l~r~L~sL~~~k~~vL~-~~p~~-~~----v~~~d~f~lN~~f~~~~~riki~~i~~~e~~ 678 (759)
T 2hye_C 605 GDGFSFEEIKMATGIEDSELRRTLQSLACGKARVLI-KSPKG-KE----VEDGDKFIFNGEFKHKLFRIKINQIQMKETV 678 (759)
T ss_dssp CCCEEHHHHHHHTCCCHHHHHHHHHTTTTTTTCSEE-ETTCS-SS----CCSSCEEEECCCCCCSCSSEECGGGGGCCCH
T ss_pred CCCcCHHHHHHHHCcCHHHHHHHHHHHHccCCceee-cCCCC-CC----CCCCCEEEeeccccCCceEEEeccccccccc
Confidence 4688999999999999999999999999 677775 22211 10 011235666643 233344433210
Q ss_pred -------HHH-HHHhhhhHHHHHHHHHHcccCCHHHHHHHHhhcccCCCccCHHHHHHHHHHHHhcccccccC
Q 010353 103 -------TIL-SQEFDQQCVELVQGLLEHGRLTLKQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCP 167 (512)
Q Consensus 103 -------~~i-~~~~G~~a~~Iv~~lL~~G~l~~~~li~~~~~~~~~~~~~~~~~l~~~f~~Lv~~~fi~rv~ 167 (512)
..| +++--..-+.||..+=..+.++-.+|+..+.+... =..+...|+..+..|++.+||.|.+
T Consensus 679 ~e~~~t~~~v~~dR~~~i~AaIVRIMK~rK~l~h~~Lv~ev~~ql~--F~p~~~~IKk~Ie~LIereYleR~~ 749 (759)
T 2hye_C 679 EEQVSTTERVFQDRQYQIDAAIVRIMKMRKTLGHNLLVSELYNQLK--FPVKPGDLKKRIESLIDRDYMERDK 749 (759)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSSEEETHHHHHHHHHHSS--SCCCHHHHHHHHHHHHHTTSCBCCS
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHcC--CCCCHHHHHHHHHHHhcccceecCC
Confidence 111 11111345778888888999998998888766432 1247889999999999999999985
No 74
>2l01_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Bacteroides vulgatus}
Probab=86.82 E-value=1.8 Score=32.94 Aligned_cols=54 Identities=24% Similarity=0.310 Sum_probs=49.6
Q ss_pred HhhhchhHHHHHHHHHhcCCCcHHHHHHhcCC-CHHHHHHHHHHHHhccccceecc
Q 010353 15 TNHFGDLVAKVCECLLRKGPLTRQNVKRYTEL-SDEQVKNALLVLIQQNCVQAFTT 69 (512)
Q Consensus 15 ~~~FG~~v~~V~~~Ll~~G~ltl~~I~~~t~l-~~~~Vr~aL~vLIQhn~V~~~~~ 69 (512)
.+..|..|+.|-..|...|.+|+.+|.+.+++ +...+-.|+==|..-|=+. |..
T Consensus 5 k~~IG~nAG~VW~~L~~~~~~s~~el~k~t~l~~d~el~lAiGWLaREdKI~-~~~ 59 (77)
T 2l01_A 5 KEKAGALAGQIWEALNGTEGLTQKQIKKATKLKADKDFFLGLGWLLREDKVV-TSE 59 (77)
T ss_dssp HHHHHHHHHHHHHHHTTSSCEEHHHHHHHHTCSCHHHHHHHHHHHHHTTCEE-EEE
T ss_pred HHHHHHHHHHHHHHHhcCCCCCHHHHHHHHCCCCHHHHHHHHHHHhhcCceE-EEe
Confidence 56789999999999999999999999999999 9999999999999999887 443
No 75
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=86.71 E-value=0.99 Score=35.54 Aligned_cols=45 Identities=11% Similarity=0.106 Sum_probs=41.6
Q ss_pred HHHHHHHHhcCCCcHHHHHHhcCCCHHHHHHHHHHHHhcccccee
Q 010353 23 AKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAF 67 (512)
Q Consensus 23 ~~V~~~Ll~~G~ltl~~I~~~t~l~~~~Vr~aL~vLIQhn~V~~~ 67 (512)
..|-++|-.+|+.++.+|++..++++..||.-|-.|.+.|.|.-.
T Consensus 5 ~~Il~~L~~~g~vsv~eLA~~l~VS~~TIRrDL~~Le~~G~l~R~ 49 (87)
T 2k02_A 5 MEVRDMLALQGRMEAKQLSARLQTPQPLIDAMLERMEAMGKVVRI 49 (87)
T ss_dssp HHHHHHHHHSCSEEHHHHHHHTTCCHHHHHHHHHHHHTTCCSEEE
T ss_pred HHHHHHHHHcCCCcHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 467888999999999999999999999999999999999999844
No 76
>1yyv_A Putative transcriptional regulator; reductive methylation, D lysine, structural genomics, PSI; HET: MLY; 2.35A {Salmonella typhimurium} SCOP: a.4.5.69
Probab=86.64 E-value=5.7 Score=33.49 Aligned_cols=65 Identities=12% Similarity=0.130 Sum_probs=49.8
Q ss_pred chhHHHHHHHHHhcCCCcHHHHHHhc-CCCHHHHHHHHHHHHhccccceecccCCCCCCCCCCCccEEEechhh
Q 010353 19 GDLVAKVCECLLRKGPLTRQNVKRYT-ELSDEQVKNALLVLIQQNCVQAFTTEQPDGFADGPKANTQYVVLFDN 91 (512)
Q Consensus 19 G~~v~~V~~~Ll~~G~ltl~~I~~~t-~l~~~~Vr~aL~vLIQhn~V~~~~~~~~~~~~~~~~~~~~Y~~~~~~ 91 (512)
|+..-.|...|. .|+++..+|.+.. +++++.+-..|-.|.+.|+|.-...+. ++...+|++...+
T Consensus 34 ~~w~l~IL~~L~-~g~~~~~eLa~~l~gis~~tls~~L~~Le~~GlV~r~~~~~-------d~r~~~y~LT~~G 99 (131)
T 1yyv_A 34 SRWGVLILVALR-DGTHRFSDLRRXMGGVSEXMLAQSLQALEQDGFLNRVSYPV-------VPPHVEYSLTPLG 99 (131)
T ss_dssp SHHHHHHHHHGG-GCCEEHHHHHHHSTTCCHHHHHHHHHHHHHHTCEEEEEECS-------SSCEEEEEECHHH
T ss_pred CCcHHHHHHHHH-cCCCCHHHHHHHhccCCHHHHHHHHHHHHHCCcEEEEecCC-------CCCeEEEEECccH
Confidence 344445666665 8999999999999 799999999999999999998433322 1235788888654
No 77
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=86.59 E-value=4.9 Score=33.81 Aligned_cols=47 Identities=17% Similarity=0.118 Sum_probs=42.5
Q ss_pred hhHHHHHHHHHhcCCCcHHHHHHhcCCCHHHHHHHHHHHHhccccce
Q 010353 20 DLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQA 66 (512)
Q Consensus 20 ~~v~~V~~~Ll~~G~ltl~~I~~~t~l~~~~Vr~aL~vLIQhn~V~~ 66 (512)
+.--.|..+|..+|++|..+|++.++++++.|-..|-.|.+.|+|.-
T Consensus 31 ~~q~~iL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r 77 (145)
T 3g3z_A 31 YNLFAVLYTLATEGSRTQKHIGEKWSLPKQTVSGVCKTLAGQGLIEW 77 (145)
T ss_dssp HHHHHHHHHHHHHCSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEee
Confidence 44556788888999999999999999999999999999999999983
No 78
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=86.54 E-value=2 Score=37.03 Aligned_cols=66 Identities=12% Similarity=0.073 Sum_probs=51.8
Q ss_pred HHHHHHHHHhcCCCcchhhhhhhcCCCcccHHHHHHHHhhcccceEEEE-ec-CC--CCCceEEEEEEehH
Q 010353 372 AYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKL-VV-TG--ARQSQFLLWKVNRQ 438 (512)
Q Consensus 372 ~~Ri~r~l~~~~~l~eek~i~~~ami~~k~~r~~Ly~L~~~g~v~~QEv-pk-~~--~~~~t~~lw~v~~~ 438 (512)
-.+|+++|...+.. .-.+|++...++...++..+.+|.+.|+|.-.-. .. .. .+-..|..|.++..
T Consensus 10 d~~il~~L~~~~~~-s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~~~~~~~~~~g~~~~a~v~v~~~~~ 79 (152)
T 2cg4_A 10 DRGILEALMGNART-AYAELAKQFGVSPETIHVRVEKMKQAGIITGARIDVSPKQLGYDVGCFIGIILKSA 79 (152)
T ss_dssp HHHHHHHHHHCTTS-CHHHHHHHHTSCHHHHHHHHHHHHHHTSEEEEEEEECTTTTTCCEEEEEEEEESSG
T ss_pred HHHHHHHHHHcCCC-CHHHHHHHHCcCHHHHHHHHHHHHHcCCcceEEEecCHHHcCCeEEEEEEEEECCC
Confidence 45799999888888 9999999999999999999999999999974332 11 21 33446777777754
No 79
>1sd4_A Penicillinase repressor; BLAI, MECI, methicillin, B-lactam, DNA binding PR; 2.00A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1xsd_A
Probab=86.43 E-value=3.8 Score=33.75 Aligned_cols=100 Identities=12% Similarity=0.136 Sum_probs=67.8
Q ss_pred hhHHHHHHHHHhcCCCcHHHHHHhcC----CCHHHHHHHHHHHHhccccceecccCCCCCCCCCCCccEEEechhhHHHH
Q 010353 20 DLVAKVCECLLRKGPLTRQNVKRYTE----LSDEQVKNALLVLIQQNCVQAFTTEQPDGFADGPKANTQYVVLFDNILHR 95 (512)
Q Consensus 20 ~~v~~V~~~Ll~~G~ltl~~I~~~t~----l~~~~Vr~aL~vLIQhn~V~~~~~~~~~~~~~~~~~~~~Y~~~~~~il~r 95 (512)
+.=..|-.+|-.+|++|..+|+..++ ++++.|...|-.|.+.|+|.. ..+. + ...|.+....--.
T Consensus 10 ~~q~~vL~~L~~~~~~t~~el~~~l~~~~~~~~~Tvt~~l~rLe~kGlv~R-~~~~--------r-~~~~~~~~~~~~~- 78 (126)
T 1sd4_A 10 MAEWDVMNIIWDKKSVSANEIVVEIQKYKEVSDKTIRTLITRLYKKEIIKR-YKSE--------N-IYFYSSNIKEDDI- 78 (126)
T ss_dssp HHHHHHHHHHHHSSSEEHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTSEEE-EEET--------T-EEEEEECSCHHHH-
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHhhcCCCChhhHHHHHHHHHHCCceEE-EeCC--------C-eEEEEEecCHHHH-
Confidence 44456888999999999999999976 689999999999999999983 3321 2 2345443332110
Q ss_pred hchhhHHHHHHHHhhhhHHHHHHHHHHcccCCHHHH
Q 010353 96 VRFAKFLTILSQEFDQQCVELVQGLLEHGRLTLKQM 131 (512)
Q Consensus 96 lR~pr~l~~i~~~~G~~a~~Iv~~lL~~G~l~~~~l 131 (512)
.....-..+...|+.....++..++....++.+++
T Consensus 79 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~ee~ 113 (126)
T 1sd4_A 79 -KMKTAKTFLNKLYGGDMKSLVLNFAKNEELNNKEI 113 (126)
T ss_dssp -HHHHHHHHHHHHHTTCHHHHHHHHHHTTCSCHHHH
T ss_pred -HHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCHHHH
Confidence 11223345555666666677777877677776664
No 80
>2fsw_A PG_0823 protein; alpha-beta structure, helix-turn-helix, winged-helix-turn-HE structural genomics, PSI, protein structure initiative; HET: MSE; 2.16A {Porphyromonas gingivalis} SCOP: a.4.5.69
Probab=86.24 E-value=1.9 Score=34.91 Aligned_cols=65 Identities=11% Similarity=0.099 Sum_probs=49.9
Q ss_pred chhHHHHHHHHHhcCCCcHHHHHHhcC-CCHHHHHHHHHHHHhccccceecccCCCCCCCCCCCccEEEechhh
Q 010353 19 GDLVAKVCECLLRKGPLTRQNVKRYTE-LSDEQVKNALLVLIQQNCVQAFTTEQPDGFADGPKANTQYVVLFDN 91 (512)
Q Consensus 19 G~~v~~V~~~Ll~~G~ltl~~I~~~t~-l~~~~Vr~aL~vLIQhn~V~~~~~~~~~~~~~~~~~~~~Y~~~~~~ 91 (512)
|+..-.|...|. .|+++..+|.+..+ ++++.+-..|-.|.+.|+|.-...+. ++...+|++...+
T Consensus 24 ~~~~~~IL~~L~-~~~~~~~eL~~~l~gis~~~ls~~L~~Le~~GlV~r~~~~~-------d~r~~~y~LT~~G 89 (107)
T 2fsw_A 24 GKWTLLIIFQIN-RRIIRYGELKRAIPGISEKMLIDELKFLCGKGLIKKKQYPE-------VPPRVEYSLTPLG 89 (107)
T ss_dssp SSSHHHHHHHHT-TSCEEHHHHHHHSTTCCHHHHHHHHHHHHHTTSEEEEEECS-------SSCEEEEEECHHH
T ss_pred CccHHHHHHHHH-hCCcCHHHHHHHcccCCHHHHHHHHHHHHHCCCEEEeecCC-------CCCeeEEEECccH
Confidence 344455777775 89999999999995 99999999999999999998433322 1235788888765
No 81
>1okr_A MECI, methicillin resistance regulatory protein MECI; bacterial antibiotic resistance, MECI protein, transcriptional regulatory element; 2.4A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1sax_A 1sd7_A 2d45_A 1sd6_A
Probab=86.20 E-value=5.2 Score=32.72 Aligned_cols=101 Identities=13% Similarity=0.183 Sum_probs=65.7
Q ss_pred chhHHHHHHHHHhcCCCcHHHHHHhcC----CCHHHHHHHHHHHHhccccceecccCCCCCCCCCCCccEEEechhhHHH
Q 010353 19 GDLVAKVCECLLRKGPLTRQNVKRYTE----LSDEQVKNALLVLIQQNCVQAFTTEQPDGFADGPKANTQYVVLFDNILH 94 (512)
Q Consensus 19 G~~v~~V~~~Ll~~G~ltl~~I~~~t~----l~~~~Vr~aL~vLIQhn~V~~~~~~~~~~~~~~~~~~~~Y~~~~~~il~ 94 (512)
++.-..|..+|...|++|..+|+...+ ++++.|...|-.|.+.|+|.... + + + ...|..-.+.--.
T Consensus 9 t~~~~~vL~~l~~~~~~t~~ela~~l~~~~~~s~~tv~~~l~~L~~~Glv~r~~-~--~------r-r~~~~~lT~~g~~ 78 (123)
T 1okr_A 9 SSAEWEVMNIIWMKKYASANNIIEEIQMQKDWSPKTIRTLITRLYKKGFIDRKK-D--N------K-IFQYYSLVEESDI 78 (123)
T ss_dssp CHHHHHHHHHHHHHSSEEHHHHHHHHHHHCCCCHHHHHHHHHHHHHHTSEEEEE-E--T------T-EEEEEESSCHHHH
T ss_pred CHHHHHHHHHHHhCCCcCHHHHHHHHhccCCCcHhhHHHHHHHHHHCCCeEEEe-c--C------C-eEEEEEecCHHHH
Confidence 344456778888889999999999987 88999999999999999998433 2 1 1 2344333332111
Q ss_pred HhchhhHHHHHHHHhhhhHHHHHHHHHHcccCCHHHH
Q 010353 95 RVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTLKQM 131 (512)
Q Consensus 95 rlR~pr~l~~i~~~~G~~a~~Iv~~lL~~G~l~~~~l 131 (512)
. .......++..++.....++..++....++.+++
T Consensus 79 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~ee~ 113 (123)
T 1okr_A 79 K--YKTSKNFINKVYKGGFNSLVLNFVEKEDLSQDEI 113 (123)
T ss_dssp H--HHHHHHHHHHHSTTCHHHHHHHHHHHSCCCHHHH
T ss_pred H--HHHHHHHHHHHHCCCHHHHHHHHHhCCCCCHHHH
Confidence 1 1233444555555555666667765566776554
No 82
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=86.06 E-value=3 Score=35.66 Aligned_cols=67 Identities=16% Similarity=0.081 Sum_probs=52.6
Q ss_pred HHHHHHHHHhcCCCcchhhhhhhcCCCcccHHHHHHHHhhcccceEEEE-ec-CC--CCCceEEEEEEehHH
Q 010353 372 AYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKL-VV-TG--ARQSQFLLWKVNRQI 439 (512)
Q Consensus 372 ~~Ri~r~l~~~~~l~eek~i~~~ami~~k~~r~~Ly~L~~~g~v~~QEv-pk-~~--~~~~t~~lw~v~~~~ 439 (512)
-.+|+++|...+.. ...+|++...++...++..+.+|.+.|+|.-.-. .. .. .+-..+..|.++...
T Consensus 7 d~~il~~L~~~~~~-s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~~~~~d~~~~g~~~~a~v~v~~~~~~ 77 (144)
T 2cfx_A 7 DLNIIEELKKDSRL-SMRELGRKIKLSPPSVTERVRQLESFGIIKQYTLEVDQKKLGLPVSCIVEATVKNAD 77 (144)
T ss_dssp HHHHHHHHHHCSCC-CHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEEEECTGGGTCCEEEEEEEEEGGGC
T ss_pred HHHHHHHHHHcCCC-CHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEecccChhhcCceEEEEEEEEECccc
Confidence 35789999888888 9999999999999999999999999999974332 11 11 344567777888664
No 83
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=86.06 E-value=2.7 Score=35.26 Aligned_cols=66 Identities=15% Similarity=0.053 Sum_probs=50.6
Q ss_pred chhHHHHHHHHHhcCCCcHHHHHHhcCCCHHHHHHHHHHHHhccccceecccCCCCCCCCCCCccEEEechhh
Q 010353 19 GDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQPDGFADGPKANTQYVVLFDN 91 (512)
Q Consensus 19 G~~v~~V~~~Ll~~G~ltl~~I~~~t~l~~~~Vr~aL~vLIQhn~V~~~~~~~~~~~~~~~~~~~~Y~~~~~~ 91 (512)
.+.--.|..+|..+|++|..+|++.++++++.|...|-.|.+.|+|.-...+. + +...+|.+...+
T Consensus 36 ~~~~~~iL~~l~~~~~~~~~ela~~l~~~~~tvs~~l~~L~~~gli~r~~~~~-d------~R~~~~~lT~~G 101 (142)
T 2bv6_A 36 TYPQFLVLTILWDESPVNVKKVVTELALDTGTVSPLLKRMEQVDLIKRERSEV-D------QREVFIHLTDKS 101 (142)
T ss_dssp CHHHHHHHHHHHHSSEEEHHHHHHHTTCCTTTHHHHHHHHHHTTSEEEEECSS-S------TTCEEEEECHHH
T ss_pred CHHHHHHHHHHHHcCCcCHHHHHHHHCCChhhHHHHHHHHHHCCCEEeecCCC-C------cceEEEEEChHH
Confidence 34455688888889999999999999999999999999999999998433222 2 224566666554
No 84
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=85.68 E-value=12 Score=31.60 Aligned_cols=47 Identities=9% Similarity=0.145 Sum_probs=42.1
Q ss_pred hhHHHHHHHHHhcCCCcHHHHHHhcCCCHHHHHHHHHHHHhccccce
Q 010353 20 DLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQA 66 (512)
Q Consensus 20 ~~v~~V~~~Ll~~G~ltl~~I~~~t~l~~~~Vr~aL~vLIQhn~V~~ 66 (512)
+.--.|..+|..+|++|..+|++.+++++..|...|-.|.+.|+|.-
T Consensus 43 ~~~~~iL~~l~~~~~~t~~ela~~l~i~~~tvs~~l~~Le~~Glv~r 89 (155)
T 3cdh_A 43 VPEWRVLACLVDNDAMMITRLAKLSLMEQSRMTRIVDQMDARGLVTR 89 (155)
T ss_dssp HHHHHHHHHHSSCSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHHCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEe
Confidence 44456778888889999999999999999999999999999999973
No 85
>2l01_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Bacteroides vulgatus}
Probab=85.64 E-value=0.88 Score=34.69 Aligned_cols=57 Identities=19% Similarity=0.154 Sum_probs=51.4
Q ss_pred HHHhCchHHHHHHHHHhcCCCcchhhhhhhcCC-CcccHHHHHHHHhhcccceEEEEec
Q 010353 365 SKRYGRDAYRIFRLLSKSGRLLETDKISDTTFV-EKKDAPKILYKLWKDGYLLMEKLVV 422 (512)
Q Consensus 365 ~~~~G~~~~Ri~r~l~~~~~l~eek~i~~~ami-~~k~~r~~Ly~L~~~g~v~~QEvpk 422 (512)
.+..|..|..||++|-..+.+ +-++|.+.+.+ +.+|+--.+-=|.++|=|.+.+..+
T Consensus 5 k~~IG~nAG~VW~~L~~~~~~-s~~el~k~t~l~~d~el~lAiGWLaREdKI~~~~~~~ 62 (77)
T 2l01_A 5 KEKAGALAGQIWEALNGTEGL-TQKQIKKATKLKADKDFFLGLGWLLREDKVVTSEVEG 62 (77)
T ss_dssp HHHHHHHHHHHHHHHTTSSCE-EHHHHHHHHTCSCHHHHHHHHHHHHHTTCEEEEEETT
T ss_pred HHHHHHHHHHHHHHHhcCCCC-CHHHHHHHHCCCCHHHHHHHHHHHhhcCceEEEeeCC
Confidence 467899999999999988666 99999999999 9999999999999999999887544
No 86
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=85.63 E-value=10 Score=31.27 Aligned_cols=52 Identities=13% Similarity=0.197 Sum_probs=44.8
Q ss_pred CchHHHHHHHHHhcCCCcchhhhhhhcCCCcccHHHHHHHHhhcccceEEEEe
Q 010353 369 GRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLV 421 (512)
Q Consensus 369 G~~~~Ri~r~l~~~~~l~eek~i~~~ami~~k~~r~~Ly~L~~~g~v~~QEvp 421 (512)
...-.+|+..|...+.+ ...+|++...++...+...+.+|.+.|||.-..-|
T Consensus 28 ~~~~~~iL~~l~~~~~~-~~~ela~~l~~s~~tvs~~l~~L~~~glv~~~~~~ 79 (138)
T 3bpv_A 28 TDAQVACLLRIHREPGI-KQDELATFFHVDKGTIARTLRRLEESGFIEREQDP 79 (138)
T ss_dssp CHHHHHHHHHHHHSTTC-BHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEET
T ss_pred CHHHHHHHHHHHHcCCC-CHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeecCC
Confidence 34567888889888788 99999999999999999999999999999765433
No 87
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=85.53 E-value=7.8 Score=32.00 Aligned_cols=61 Identities=20% Similarity=0.397 Sum_probs=48.2
Q ss_pred CchHHHHHHHHHhcCCCcchhhhhhhcCCCcccHHHHHHHHhhcccceEEEEecCCCCCceEEEE
Q 010353 369 GRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTGARQSQFLLW 433 (512)
Q Consensus 369 G~~~~Ri~r~l~~~~~l~eek~i~~~ami~~k~~r~~Ly~L~~~g~v~~QEvpk~~~~~~t~~lw 433 (512)
...-.+|+..|..++.+ ...+|++...++...+-..+.+|.+.|||.-..-|. ..|..++.
T Consensus 32 ~~~~~~iL~~l~~~~~~-~~~ela~~l~~~~~tvs~~l~~L~~~gli~r~~~~~---d~r~~~~~ 92 (139)
T 3bja_A 32 SYVQFGVIQVLAKSGKV-SMSKLIENMGCVPSNMTTMIQRMKRDGYVMTEKNPN---DQRETLVY 92 (139)
T ss_dssp CHHHHHHHHHHHHSCSE-EHHHHHHHCSSCCTTHHHHHHHHHHTTSEEEEECSS---CTTCEEEE
T ss_pred CHHHHHHHHHHHHcCCc-CHHHHHHHHCCChhHHHHHHHHHHHCCCeeeccCCC---CCceeEEE
Confidence 34567888888888777 999999999999999999999999999996553332 24555443
No 88
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=85.48 E-value=1.7 Score=32.09 Aligned_cols=44 Identities=16% Similarity=0.295 Sum_probs=39.2
Q ss_pred HHHHHHHHHhcC-CCcHHHHHHhcCCCHHHHHHHHHHHHhccccc
Q 010353 22 VAKVCECLLRKG-PLTRQNVKRYTELSDEQVKNALLVLIQQNCVQ 65 (512)
Q Consensus 22 v~~V~~~Ll~~G-~ltl~~I~~~t~l~~~~Vr~aL~vLIQhn~V~ 65 (512)
-.+|...|...| +++..+|++.+++|.+.|.+.|-.|.+.|+|.
T Consensus 12 ~~~IL~~L~~~~~~~s~~eLA~~lglsr~tv~~~l~~L~~~G~I~ 56 (67)
T 2heo_A 12 EQKILQVLSDDGGPVAIFQLVKKCQVPKKTLNQVLYRLKKEDRVS 56 (67)
T ss_dssp HHHHHHHHHHHCSCEEHHHHHHHHCSCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHcCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEe
Confidence 346888887764 79999999999999999999999999999986
No 89
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=85.28 E-value=16 Score=30.71 Aligned_cols=50 Identities=12% Similarity=0.127 Sum_probs=44.1
Q ss_pred hCchHHHHHHHHHhcCCCcchhhhhhhcCCCcccHHHHHHHHhhcccceEE
Q 010353 368 YGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLME 418 (512)
Q Consensus 368 ~G~~~~Ri~r~l~~~~~l~eek~i~~~ami~~k~~r~~Ly~L~~~g~v~~Q 418 (512)
+...-.+|+..|...+.+ ...+|++...++...+...+.+|.+.|||.-.
T Consensus 38 lt~~~~~iL~~l~~~~~~-t~~ela~~l~~~~~~vs~~l~~Le~~Glv~r~ 87 (152)
T 3bj6_A 38 VTVGQRAILEGLSLTPGA-TAPQLGAALQMKRQYISRILQEVQRAGLIERR 87 (152)
T ss_dssp CCHHHHHHHHHHHHSTTE-EHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCHHHHHHHHHHHhCCCC-CHHHHHHHHCCCHHHHHHHHHHHHHCCCeeec
Confidence 445567889888888877 99999999999999999999999999999654
No 90
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=85.27 E-value=9 Score=30.72 Aligned_cols=61 Identities=13% Similarity=0.108 Sum_probs=47.4
Q ss_pred chHHHHHHHHHhcCCCcchhhhhhhcCCCcccHHHHHHHHhhcccceEEEEecCCCCCceEEEEEEehHH
Q 010353 370 RDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTGARQSQFLLWKVNRQI 439 (512)
Q Consensus 370 ~~~~Ri~r~l~~~~~l~eek~i~~~ami~~k~~r~~Ly~L~~~g~v~~QEvpk~~~~~~t~~lw~v~~~~ 439 (512)
..-.+|+.+| .+|.+ ...+|++...++...+...|..|.+.|+|.-... ++ ...|++....
T Consensus 21 ~~r~~IL~~L-~~~~~-~~~ela~~l~is~~tv~~~l~~L~~~gli~~~~~------gr-~~~y~l~~~~ 81 (114)
T 2oqg_A 21 ETRWEILTEL-GRADQ-SASSLATRLPVSRQAIAKHLNALQACGLVESVKV------GR-EIRYRALGAE 81 (114)
T ss_dssp HHHHHHHHHH-HHSCB-CHHHHHHHSSSCHHHHHHHHHHHHHTTSEEEEEE------TT-EEEEEECSHH
T ss_pred hHHHHHHHHH-HcCCC-CHHHHHHHHCcCHHHHHHHHHHHHHCCCeeEEec------CC-EEEEEechHH
Confidence 3346789988 66777 9999999999999999999999999999965422 22 4456666543
No 91
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=85.23 E-value=4.4 Score=34.01 Aligned_cols=47 Identities=15% Similarity=0.225 Sum_probs=42.1
Q ss_pred hhHHHHHHHHHhcCCCcHHHHHHhcCCCHHHHHHHHHHHHhccccce
Q 010353 20 DLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQA 66 (512)
Q Consensus 20 ~~v~~V~~~Ll~~G~ltl~~I~~~t~l~~~~Vr~aL~vLIQhn~V~~ 66 (512)
+.--.|..+|..+|++|..+|++.++++++.|-..+-.|.+.|+|.-
T Consensus 37 ~~~~~iL~~l~~~~~~t~~eLa~~l~~~~~~vs~~l~~L~~~Glv~r 83 (143)
T 3oop_A 37 PEQWSVLEGIEANEPISQKEIALWTKKDTPTVNRIVDVLLRKELIVR 83 (143)
T ss_dssp HHHHHHHHHHHHHSSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHHcCCcCHHHHHHHHCCCHhhHHHHHHHHHHCCCeec
Confidence 44456778888889999999999999999999999999999999983
No 92
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=85.22 E-value=8.3 Score=32.64 Aligned_cols=52 Identities=13% Similarity=0.154 Sum_probs=45.2
Q ss_pred HhCchHHHHHHHHHhcCCCcchhhhhhhcCCCcccHHHHHHHHhhcccceEEE
Q 010353 367 RYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEK 419 (512)
Q Consensus 367 ~~G~~~~Ri~r~l~~~~~l~eek~i~~~ami~~k~~r~~Ly~L~~~g~v~~QE 419 (512)
-+...-.+|+..|...+.+ ...+|++...++...+...+.+|.+.|||.-..
T Consensus 34 ~l~~~~~~iL~~l~~~~~~-t~~ela~~l~~s~~tvs~~l~~Le~~glv~r~~ 85 (155)
T 1s3j_A 34 GVTPAQLFVLASLKKHGSL-KVSEIAERMEVKPSAVTLMADRLEQKNLIARTH 85 (155)
T ss_dssp TCCHHHHHHHHHHHHHSEE-EHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCCHHHHHHHHHHHHcCCC-CHHHHHHHHCCCHHHHHHHHHHHHHCCCEeecC
Confidence 3445678899999887777 999999999999999999999999999996653
No 93
>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}
Probab=85.21 E-value=0.97 Score=37.33 Aligned_cols=60 Identities=15% Similarity=0.207 Sum_probs=50.6
Q ss_pred chhHHHHHHHHHhcCCCcHHHHHHhc--CCCHHHHHHHHHHHHhccccceecccCCCCCCCCCCCccEEEechhh
Q 010353 19 GDLVAKVCECLLRKGPLTRQNVKRYT--ELSDEQVKNALLVLIQQNCVQAFTTEQPDGFADGPKANTQYVVLFDN 91 (512)
Q Consensus 19 G~~v~~V~~~Ll~~G~ltl~~I~~~t--~l~~~~Vr~aL~vLIQhn~V~~~~~~~~~~~~~~~~~~~~Y~~~~~~ 91 (512)
.+.-.+|...|..+|++|..+|+... ++++..|++-|-.|..+|+|... . . .+|.+...+
T Consensus 12 d~~d~~IL~~L~~~g~~s~~eLA~~l~~giS~~aVs~rL~~Le~~GLV~~~--~--------r---g~Y~LT~~G 73 (111)
T 3b73_A 12 TIWDDRILEIIHEEGNGSPKELEDRDEIRISKSSVSRRLKKLADHDLLQPL--A--------N---GVYVITEEG 73 (111)
T ss_dssp CHHHHHHHHHHHHHSCBCHHHHHTSTTCCSCHHHHHHHHHHHHHTTSEEEC--S--------T---TCEEECHHH
T ss_pred CHHHHHHHHHHHHcCCCCHHHHHHHHhcCCCHHHHHHHHHHHHHCCCEEec--C--------C---ceEEECchH
Confidence 45557889999889999999999999 99999999999999999999842 1 1 178888766
No 94
>2h09_A Transcriptional regulator MNTR; transcription regulator, diphtheria toxin, manganese transport, structural genomics, NPPSFA; 2.10A {Escherichia coli}
Probab=85.21 E-value=7.6 Score=33.25 Aligned_cols=61 Identities=21% Similarity=0.289 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHhcCCCcchhhhhhhcCCCcccHHHHHHHHhhcccceE
Q 010353 348 FEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLM 417 (512)
Q Consensus 348 ~~~~~~~lr~~~le~~v~~~~G~~~~Ri~r~l~~~~~l~eek~i~~~ami~~k~~r~~Ly~L~~~g~v~~ 417 (512)
|+.+...-+....+.++.. |+.++...|.+ ...+|++...++...++..|.+|.+.|||..
T Consensus 26 ~~~~~~~~r~~~~~~~~~~--------i~~~l~~~~~~-~~~~la~~l~vs~~tvs~~l~~Le~~Glv~r 86 (155)
T 2h09_A 26 FRQVREAHRRELIDDYVEL--------ISDLIREVGEA-RQVDMAARLGVSQPTVAKMLKRLATMGLIEM 86 (155)
T ss_dssp CHHHHHHHHHHHHHHHHHH--------HHHHHHHHSCC-CHHHHHHHHTSCHHHHHHHHHHHHHTTCEEE
T ss_pred HHHhhhccccHHHHHHHHH--------HHHHHHhCCCc-CHHHHHHHhCcCHHHHHHHHHHHHHCCCEEE
Confidence 4444444445555555443 66677666777 9999999999999999999999999999843
No 95
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=85.18 E-value=0.81 Score=33.94 Aligned_cols=43 Identities=26% Similarity=0.397 Sum_probs=37.9
Q ss_pred HHHHHHHHhcCCCcchhhhhhhcCCCcccHHHHHHHHhhcccc
Q 010353 373 YRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYL 415 (512)
Q Consensus 373 ~Ri~r~l~~~~~l~eek~i~~~ami~~k~~r~~Ly~L~~~g~v 415 (512)
-+|+.+|...+..+.-.+|++...+|...+.+.+..|.++|||
T Consensus 13 ~~IL~~L~~~~~~~s~~eLA~~lglsr~tv~~~l~~L~~~G~I 55 (67)
T 2heo_A 13 QKILQVLSDDGGPVAIFQLVKKCQVPKKTLNQVLYRLKKEDRV 55 (67)
T ss_dssp HHHHHHHHHHCSCEEHHHHHHHHCSCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHHcCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcE
Confidence 3688888776543499999999999999999999999999997
No 96
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=85.18 E-value=6.5 Score=32.83 Aligned_cols=53 Identities=19% Similarity=0.181 Sum_probs=46.0
Q ss_pred hCchHHHHHHHHHhcCCCcchhhhhhhcCCCcccHHHHHHHHhhcccceEEEEe
Q 010353 368 YGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLV 421 (512)
Q Consensus 368 ~G~~~~Ri~r~l~~~~~l~eek~i~~~ami~~k~~r~~Ly~L~~~g~v~~QEvp 421 (512)
+...-.+|+..|...|.+ ...+|++...++...+...+.+|.+.|||.-..-|
T Consensus 31 l~~~~~~iL~~l~~~~~~-~~~~la~~l~~s~~tvs~~l~~L~~~glv~r~~~~ 83 (145)
T 2a61_A 31 ITPAQFDILQKIYFEGPK-RPGELSVLLGVAKSTVTGLVKRLEADGYLTRTPDP 83 (145)
T ss_dssp CCHHHHHHHHHHHHHCCB-CHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEET
T ss_pred CCHHHHHHHHHHHHcCCC-CHHHHHHHHCCCchhHHHHHHHHHHCCCeeecCCC
Confidence 445668899999888887 99999999999999999999999999999765433
No 97
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=84.91 E-value=4.1 Score=34.10 Aligned_cols=51 Identities=8% Similarity=0.171 Sum_probs=44.2
Q ss_pred hCchHHHHHHHHHhcCCCcchhhhhhhcCCCcccHHHHHHHHhhcccceEEE
Q 010353 368 YGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEK 419 (512)
Q Consensus 368 ~G~~~~Ri~r~l~~~~~l~eek~i~~~ami~~k~~r~~Ly~L~~~g~v~~QE 419 (512)
+...-.+|+..|...+.+ ...+|++...++...+...+.+|.+.|||.-+.
T Consensus 35 l~~~~~~iL~~l~~~~~~-~~~ela~~l~~~~~tvs~~l~~L~~~gli~r~~ 85 (142)
T 2bv6_A 35 LTYPQFLVLTILWDESPV-NVKKVVTELALDTGTVSPLLKRMEQVDLIKRER 85 (142)
T ss_dssp CCHHHHHHHHHHHHSSEE-EHHHHHHHTTCCTTTHHHHHHHHHHTTSEEEEE
T ss_pred CCHHHHHHHHHHHHcCCc-CHHHHHHHHCCChhhHHHHHHHHHHCCCEEeec
Confidence 344567888888887777 999999999999999999999999999997653
No 98
>1z6r_A MLC protein; transcriptional repressor, ROK family protein, DNA binding P helix-turn-helix, phosphotransferase system; 2.70A {Escherichia coli} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 PDB: 3bp8_A
Probab=84.84 E-value=1.2 Score=45.37 Aligned_cols=66 Identities=15% Similarity=0.286 Sum_probs=48.0
Q ss_pred HHHHHHHHhcCCCcHHHHHHhcCCCHHHHHHHHHHHHhccccceecccCCCCCCCCCCCccEEEechhh
Q 010353 23 AKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQPDGFADGPKANTQYVVLFDN 91 (512)
Q Consensus 23 ~~V~~~Ll~~G~ltl~~I~~~t~l~~~~Vr~aL~vLIQhn~V~~~~~~~~~~~~~~~~~~~~Y~~~~~~ 91 (512)
..|.+.|..+|++|-.+|++.++|++..|.+.+--|++.|+|.-.......+. .+..+.|.+|.+.
T Consensus 19 ~~il~~l~~~~~~sr~~la~~~~ls~~tv~~~v~~L~~~g~i~~~~~~~~~~~---GR~~~~l~~~~~~ 84 (406)
T 1z6r_A 19 GAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVHEMLEAHLVQELEIKEAGNR---GRPAVGLVVETEA 84 (406)
T ss_dssp HHHHHHHHSSCSCCHHHHHHHTTCCHHHHHHHHHHHHHHTSEEEC----------------CEEECCTT
T ss_pred HHHHHHHHHcCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCcEEeecccCCCCC---CCCCeEEEEcCCc
Confidence 56899999999999999999999999999999999999999974433210111 2334567888764
No 99
>3dpl_C Cullin-5; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} PDB: 3dqv_C
Probab=84.77 E-value=4 Score=41.26 Aligned_cols=132 Identities=15% Similarity=0.130 Sum_probs=84.1
Q ss_pred CCCcHHHHHHhcCCCHHHHHHHHHHHHh-----ccccceecccCCCCCCCCCCCccEEEechhhH-------HHHhchhh
Q 010353 33 GPLTRQNVKRYTELSDEQVKNALLVLIQ-----QNCVQAFTTEQPDGFADGPKANTQYVVLFDNI-------LHRVRFAK 100 (512)
Q Consensus 33 G~ltl~~I~~~t~l~~~~Vr~aL~vLIQ-----hn~V~~~~~~~~~~~~~~~~~~~~Y~~~~~~i-------l~rlR~pr 100 (512)
..+|+.+|...|+++...++.+|..|+. ++++.. .+.... +.+ -.....|.+|.+=- ..+++.+-
T Consensus 214 ~~lt~~ei~~~t~i~~~~L~r~L~sL~~~~k~k~~iL~~-~~~~~~-~~~-~~~~d~f~~N~~F~~~k~~k~~~r~ki~~ 290 (382)
T 3dpl_C 214 EKISFENLKLATELPDAELRRTLWSLVAFPKLKRQVLLY-EPQVNS-PKD-FTEGTLFSVNQEFSLIKNAKVQKRGKINL 290 (382)
T ss_dssp CCEEHHHHHHHHCCCHHHHHHHHHHHHCCTTCSSCSEEE-SSCCSS-GGG-CCTTCEEEECTTCCEESSSSEESEEEEEC
T ss_pred CcCcHHHHHHHHCcCHHHHHHHHHHHhcccchhcceeee-cCCccc-cCc-CCCCCEEEEcCCCcCCcccccceeEEEec
Confidence 5789999999999999999999999986 456652 221100 000 01123566765421 13333221
Q ss_pred H--------HH------H-HHHHhhhhHHHHHHHHHHcccCCHHHHHHHHhhcccCCCccCHHHHHHHHHHHHhcccccc
Q 010353 101 F--------LT------I-LSQEFDQQCVELVQGLLEHGRLTLKQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVER 165 (512)
Q Consensus 101 ~--------l~------~-i~~~~G~~a~~Iv~~lL~~G~l~~~~li~~~~~~~~~~~~~~~~~l~~~f~~Lv~~~fi~r 165 (512)
. .. . .+++--..-|.||...=....++-.+|+..+.+....-=..+...|+..+..|++.+||+|
T Consensus 291 ~~~~q~~~~~e~~~~~~~v~edR~~~i~AaIVRIMK~rK~l~h~~Lv~ev~~ql~~rF~p~~~~IKk~Ie~LIereYleR 370 (382)
T 3dpl_C 291 IGRLQLTTERMREEENEGIVQLRILRTQEAIIQIMKMRKKISNAQLQTELVEILKNMFLPQKKMIKEQIEWLIEHKYIRR 370 (382)
T ss_dssp CTTTTSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSEECHHHHHHHHHHHTTTTCCCCHHHHHHHHHHHHHTTSEEE
T ss_pred ccccccccchhhhhhHHHHHHHhhheeeEEEehhhhccCcccHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhhhhcc
Confidence 1 00 0 1111223356788888888999999999887664322112367899999999999999999
Q ss_pred cC
Q 010353 166 CP 167 (512)
Q Consensus 166 v~ 167 (512)
.+
T Consensus 371 ~~ 372 (382)
T 3dpl_C 371 DE 372 (382)
T ss_dssp ET
T ss_pred CC
Confidence 85
No 100
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=84.69 E-value=5.7 Score=34.04 Aligned_cols=47 Identities=15% Similarity=0.083 Sum_probs=42.1
Q ss_pred hhHHHHHHHHHhcCCCcHHHHHHhcCCCHHHHHHHHHHHHhccccce
Q 010353 20 DLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQA 66 (512)
Q Consensus 20 ~~v~~V~~~Ll~~G~ltl~~I~~~t~l~~~~Vr~aL~vLIQhn~V~~ 66 (512)
+.--.|...|..+|++|..+|++.+++++..|...|-.|.+.|+|..
T Consensus 49 ~~~~~iL~~l~~~~~~t~~ela~~l~is~~tvs~~l~~Le~~glv~r 95 (162)
T 2fa5_A 49 IPEWRVITILALYPGSSASEVSDRTAMDKVAVSRAVARLLERGFIRR 95 (162)
T ss_dssp HHHHHHHHHHHHSTTCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEC
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEee
Confidence 44456788888899999999999999999999999999999999983
No 101
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=84.67 E-value=17 Score=30.52 Aligned_cols=51 Identities=10% Similarity=-0.011 Sum_probs=44.3
Q ss_pred hchhHHHHHHHHHhcCCCcHHHHHHhcCCCHHHHHHHHHHHHhccccceec
Q 010353 18 FGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFT 68 (512)
Q Consensus 18 FG~~v~~V~~~Ll~~G~ltl~~I~~~t~l~~~~Vr~aL~vLIQhn~V~~~~ 68 (512)
+.+.-..|..+|..+|++|..+|++.++++++.|...|-.|.+.|+|.-..
T Consensus 38 lt~~~~~iL~~l~~~~~~t~~ela~~l~~~~~~vs~~l~~Le~~Glv~r~~ 88 (152)
T 3bj6_A 38 VTVGQRAILEGLSLTPGATAPQLGAALQMKRQYISRILQEVQRAGLIERRT 88 (152)
T ss_dssp CCHHHHHHHHHHHHSTTEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred CCHHHHHHHHHHHhCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCeeecC
Confidence 335556788888889999999999999999999999999999999998433
No 102
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=84.63 E-value=7.8 Score=36.62 Aligned_cols=138 Identities=8% Similarity=0.100 Sum_probs=87.0
Q ss_pred hhhchhHH--HHHHHHHhc--CCCcHHHHHHhcCCCHHHHHHHHHHHHhccccceecccCCCCCCCCCCCccEEEechh-
Q 010353 16 NHFGDLVA--KVCECLLRK--GPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQPDGFADGPKANTQYVVLFD- 90 (512)
Q Consensus 16 ~~FG~~v~--~V~~~Ll~~--G~ltl~~I~~~t~l~~~~Vr~aL~vLIQhn~V~~~~~~~~~~~~~~~~~~~~Y~~~~~- 90 (512)
..||=..+ .|-.+|-.+ |++|..+|....++++..+-..|--|.+.|+|.--..+.+ .+....| +...
T Consensus 28 ~~~~lt~~q~~vL~~L~~~~~~~~~~~el~~~l~~~~~t~t~~l~rLe~~G~i~R~~~~~D------rR~~~i~-LT~~G 100 (250)
T 1p4x_A 28 PEVDMTIKEFILLTYLFHQQENTLPFKKIVSDLCYKQSDLVQHIKVLVKHSYISKVRSKID------ERNTYIS-ISEEQ 100 (250)
T ss_dssp TTCSSCHHHHHHHHHHHSCSCSEEEHHHHHHHSSSCGGGTHHHHHHHHHTTSCEEEECSSS------TTSEEEE-CCHHH
T ss_pred hhcCCCHHHHHHHHHHHhcCCCCcCHHHHHHHHCCCHhhHHHHHHHHHHCCCEEecCCCCC------CCeEEEE-ECHHH
Confidence 34554444 466777764 4899999999999999999999999999999973332221 1111111 1100
Q ss_pred -------------------------------hHHHHhc----hhhHHHHHHHHhh--hhHHHHHHHHHHcc--cCCHHHH
Q 010353 91 -------------------------------NILHRVR----FAKFLTILSQEFD--QQCVELVQGLLEHG--RLTLKQM 131 (512)
Q Consensus 91 -------------------------------~il~rlR----~pr~l~~i~~~~G--~~a~~Iv~~lL~~G--~l~~~~l 131 (512)
++....+ .-++...+-..|| ..-..|+..|..+| .+++++|
T Consensus 101 ~~~~~~~~~~~~~~~eq~s~E~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~gLt~~q~~vL~~L~~~~~~~~t~~eL 180 (250)
T 1p4x_A 101 REKIAERVTLFDQIIKQFNLADQSESQMIPKDSKEFLNLMMYTMYFKNIIKKHLTLSFVEFTILAIITSQNKNIVLLKDL 180 (250)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCSSCSCCSHHHHHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHTTTTCCEEHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhCCCCCcCHHHH
Confidence 1111111 1222232333555 23345666666665 3888888
Q ss_pred HHHHhhcccCCCccCHHHHHHHHHHHHhcccccccCC
Q 010353 132 FDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPA 168 (512)
Q Consensus 132 i~~~~~~~~~~~~~~~~~l~~~f~~Lv~~~fi~rv~~ 168 (512)
.+.+. .+...+...+.+|.+.|||.|.+.
T Consensus 181 a~~l~--------i~~~tvt~~v~rLe~~GlV~R~~~ 209 (250)
T 1p4x_A 181 IETIH--------HKYPQTVRALNNLKKQGYLIKERS 209 (250)
T ss_dssp HHHSS--------SCHHHHHHHHHHHHHHTSSEEEEC
T ss_pred HHHHC--------CChhhHHHHHHHHHHCCCEEeeCC
Confidence 77753 257789999999999999999863
No 103
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=84.35 E-value=1.5 Score=33.68 Aligned_cols=46 Identities=15% Similarity=0.146 Sum_probs=40.4
Q ss_pred HHHHHHHHHcccCCHHHHHHHHhhcccCCCccCHHHHHHHHHHHHhcccccccC
Q 010353 114 VELVQGLLEHGRLTLKQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCP 167 (512)
Q Consensus 114 ~~Iv~~lL~~G~l~~~~li~~~~~~~~~~~~~~~~~l~~~f~~Lv~~~fi~rv~ 167 (512)
..|++.|-.+|+++++++.+.+. .+...|+.-+..|.+.|+|.|++
T Consensus 5 ~~Il~~L~~~g~vsv~eLa~~l~--------VS~~TIRrdL~~Le~~G~l~R~~ 50 (78)
T 1xn7_A 5 IQVRDLLALRGRMEAAQISQTLN--------TPQPMINAMLQQLESMGKAVRIQ 50 (78)
T ss_dssp HHHHHHHHHSCSBCHHHHHHHTT--------CCHHHHHHHHHHHHHHTSEEEEC
T ss_pred HHHHHHHHHcCCCcHHHHHHHHC--------cCHHHHHHHHHHHHHCCCEEEec
Confidence 46888888999999999998874 26788999999999999999983
No 104
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=84.30 E-value=11 Score=31.86 Aligned_cols=48 Identities=19% Similarity=0.110 Sum_probs=42.7
Q ss_pred hhHHHHHHHHHhcCCCcHHHHHHhcCCCHHHHHHHHHHHHhcccccee
Q 010353 20 DLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAF 67 (512)
Q Consensus 20 ~~v~~V~~~Ll~~G~ltl~~I~~~t~l~~~~Vr~aL~vLIQhn~V~~~ 67 (512)
+.--.|..+|..+|++|..+|++.+++++..|...|-.|.+.|+|.-.
T Consensus 37 ~~~~~iL~~l~~~~~~t~~ela~~l~~s~~tvs~~l~~Le~~glv~r~ 84 (155)
T 1s3j_A 37 PAQLFVLASLKKHGSLKVSEIAERMEVKPSAVTLMADRLEQKNLIART 84 (155)
T ss_dssp HHHHHHHHHHHHHSEEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeec
Confidence 445567888888899999999999999999999999999999999843
No 105
>2hoe_A N-acetylglucosamine kinase; TM1224, structural genomics, PSI-2, protein structure initiative, joint center structural genomics, JCSG; 2.46A {Thermotoga maritima} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=84.26 E-value=1.4 Score=44.45 Aligned_cols=64 Identities=9% Similarity=0.166 Sum_probs=50.4
Q ss_pred HHHHHHHhcCCCcHHHHHHhcCCCHHHHHHHHHHHHhccccceecccCCCCCCCCCCCccEEEechhhH
Q 010353 24 KVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQPDGFADGPKANTQYVVLFDNI 92 (512)
Q Consensus 24 ~V~~~Ll~~G~ltl~~I~~~t~l~~~~Vr~aL~vLIQhn~V~~~~~~~~~~~~~~~~~~~~Y~~~~~~i 92 (512)
+|.+.|. +|++|-.+|++.|+|++..|.+.+--|++.|+|.-......++ .++.+.|.+|.+..
T Consensus 24 ~il~~l~-~~~~sr~~la~~~gls~~tv~~~v~~L~~~gli~~~~~~~~~~----GR~~~~l~~~~~~~ 87 (380)
T 2hoe_A 24 RILKRIM-KSPVSRVELAEELGLTKTTVGEIAKIFLEKGIVVEEKDSPKGV----GRPTKSLKISPNCA 87 (380)
T ss_dssp CSHHHHH-HSCBCHHHHHHHHTCCHHHHHHHHHHHHHHTSEEEEECCC--------CCCEEEEECGGGC
T ss_pred HHHHHHH-cCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEeecCCCCCC----CCCceEEEEccCCC
Confidence 4788899 9999999999999999999999999999999998554322221 23456788888753
No 106
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=84.12 E-value=8.7 Score=31.84 Aligned_cols=52 Identities=12% Similarity=0.092 Sum_probs=44.3
Q ss_pred CchHHHHHHHHHhcC--CCcchhhhhhhcCCCcccHHHHHHHHhhcccceEEEEe
Q 010353 369 GRDAYRIFRLLSKSG--RLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLV 421 (512)
Q Consensus 369 G~~~~Ri~r~l~~~~--~l~eek~i~~~ami~~k~~r~~Ly~L~~~g~v~~QEvp 421 (512)
...-.+|+..|...+ .+ ...+|++...++...+...+.+|.+.|||.-+.-|
T Consensus 33 t~~~~~iL~~l~~~~~~~~-~~~ela~~l~~~~~tvs~~l~~Le~~Gli~r~~~~ 86 (141)
T 3bro_A 33 TGTQMTIIDYLSRNKNKEV-LQRDLESEFSIKSSTATVLLQRMEIKKLLYRKVSG 86 (141)
T ss_dssp CHHHHHHHHHHHHTTTSCC-BHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECS
T ss_pred CHHHHHHHHHHHHCCCCCc-CHHHHHHHHCCCcchHHHHHHHHHHCCCEEeeCCC
Confidence 345678889998876 56 99999999999999999999999999999765433
No 107
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=84.06 E-value=12 Score=31.48 Aligned_cols=47 Identities=6% Similarity=0.009 Sum_probs=42.4
Q ss_pred hhHHHHHHHHHhcCCCcHHHHHHhcCCCHHHHHHHHHHHHhccccce
Q 010353 20 DLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQA 66 (512)
Q Consensus 20 ~~v~~V~~~Ll~~G~ltl~~I~~~t~l~~~~Vr~aL~vLIQhn~V~~ 66 (512)
+.--.|..+|..+|++|..+|++.++++++.|-..+-.|.+.|+|..
T Consensus 41 ~~~~~iL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r 87 (154)
T 2qww_A 41 IQQLAMINVIYSTPGISVADLTKRLIITGSSAAANVDGLISLGLVVK 87 (154)
T ss_dssp HHHHHHHHHHHHSTTEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEe
Confidence 44456888888899999999999999999999999999999999984
No 108
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=84.04 E-value=3.7 Score=36.32 Aligned_cols=66 Identities=18% Similarity=0.215 Sum_probs=50.7
Q ss_pred hHHHHHHHHHhcCCCcchhhhhhhcCCCcccHHHHHHHHhhcccce-EEEEecCC---CCCceEEEEEEehH
Q 010353 371 DAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLL-MEKLVVTG---ARQSQFLLWKVNRQ 438 (512)
Q Consensus 371 ~~~Ri~r~l~~~~~l~eek~i~~~ami~~k~~r~~Ly~L~~~g~v~-~QEvpk~~---~~~~t~~lw~v~~~ 438 (512)
.-.+|+++|...+.+ ...+|++...++...++..+.+|.+.|+|. ..-+.... .+ ..+..|.++..
T Consensus 18 ~d~~IL~~L~~~~~~-s~~eLA~~lglS~~tv~~~l~~L~~~G~I~~~~~~~d~~~lG~~-~a~v~v~~~~~ 87 (171)
T 2ia0_A 18 LDRNILRLLKKDARL-TISELSEQLKKPESTIHFRIKKLQERGVIERYTIILGEQLKPKH-LALIVLEVGKP 87 (171)
T ss_dssp HHHHHHHHHHHCTTC-CHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEEEEECTTTSCSE-EEEEEEEESCC
T ss_pred HHHHHHHHHHHcCCC-CHHHHHHHHCcCHHHHHHHHHHHHHCCCEEeecccCCHHHhhcc-eEEEEEEECCc
Confidence 335789999888888 999999999999999999999999999995 33332222 33 55666677643
No 109
>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=83.97 E-value=3.5 Score=34.74 Aligned_cols=66 Identities=15% Similarity=0.040 Sum_probs=50.2
Q ss_pred hhHHHHHHHHHhcCCCcHHHHHHhcCCCHHHHHHHHHHHHhccccceecccCCCCCCCCCCCccEEEechhhH
Q 010353 20 DLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQPDGFADGPKANTQYVVLFDNI 92 (512)
Q Consensus 20 ~~v~~V~~~Ll~~G~ltl~~I~~~t~l~~~~Vr~aL~vLIQhn~V~~~~~~~~~~~~~~~~~~~~Y~~~~~~i 92 (512)
+.--.|..+|..+|++|..+|++.++++++.|...|-.|.+.|+|.....+. + +...+|.+...+.
T Consensus 40 ~~~~~iL~~l~~~~~~~~~~la~~l~~~~~tvs~~l~~L~~~glv~r~~~~~-d------~R~~~~~LT~~G~ 105 (147)
T 1z91_A 40 YPQYLALLLLWEHETLTVKKMGEQLYLDSGTLTPMLKRMEQQGLITRKRSEE-D------ERSVLISLTEDGA 105 (147)
T ss_dssp HHHHHHHHHHHHHSEEEHHHHHHTTTCCHHHHHHHHHHHHHHTSEECCBCSS-C------TTSBEEEECHHHH
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHCCCcCcHHHHHHHHHHCCCEEeccCCC-C------CCeeEEEECHhHH
Confidence 4445678888888999999999999999999999999999999998333221 1 2235666665543
No 110
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=83.92 E-value=8.9 Score=33.26 Aligned_cols=48 Identities=8% Similarity=0.086 Sum_probs=42.5
Q ss_pred hhHHHHHHHHHhcCCCcHHHHHHhcCCCHHHHHHHHHHHHhcccccee
Q 010353 20 DLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAF 67 (512)
Q Consensus 20 ~~v~~V~~~Ll~~G~ltl~~I~~~t~l~~~~Vr~aL~vLIQhn~V~~~ 67 (512)
+.--.|..+|..+|++|..+|++.+++++..|-..+-.|.+.|+|.-.
T Consensus 45 ~~~~~iL~~L~~~~~~t~~eLa~~l~is~~tvs~~l~~Le~~GlV~r~ 92 (168)
T 2nyx_A 45 IPQFRTLVILSNHGPINLATLATLLGVQPSATGRMVDRLVGAELIDRL 92 (168)
T ss_dssp HHHHHHHHHHHHHCSEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEec
Confidence 444567888888899999999999999999999999999999999843
No 111
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=83.80 E-value=3.5 Score=35.91 Aligned_cols=68 Identities=16% Similarity=0.245 Sum_probs=52.3
Q ss_pred hHHHHHHHHHhcCCCcchhhhhhhcCCCcccHHHHHHHHhhcccceEE-EEecCC---CCCceEEEEEEehHH
Q 010353 371 DAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLME-KLVVTG---ARQSQFLLWKVNRQI 439 (512)
Q Consensus 371 ~~~Ri~r~l~~~~~l~eek~i~~~ami~~k~~r~~Ly~L~~~g~v~~Q-Evpk~~---~~~~t~~lw~v~~~~ 439 (512)
.-.+|+++|...+.+ .-.+|++...++...++..+.+|.+.|+|.-. -..... .+-..+..|.++...
T Consensus 11 ~~~~il~~L~~~~~~-s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~~~~~d~~~~g~~~~a~v~v~~~~~~ 82 (162)
T 2p5v_A 11 TDIKILQVLQENGRL-TNVELSERVALSPSPCLRRLKQLEDAGIVRQYAALLSPESVNLGLQAFIRVSIRKAK 82 (162)
T ss_dssp HHHHHHHHHHHCTTC-CHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEEEEECTGGGTCCEEEEEEEEECSST
T ss_pred HHHHHHHHHHHcCCC-CHHHHHHHHCcCHHHHHHHHHHHHHCCCEeeecccCChHHhcccEEEEEEEEEcCCc
Confidence 345789999888888 99999999999999999999999999999633 222211 333556677887653
No 112
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=83.63 E-value=18 Score=30.04 Aligned_cols=48 Identities=15% Similarity=0.041 Sum_probs=41.6
Q ss_pred hhHHHHHHHHHhcCCCcHHHHHHhcCCCHHHHHHHHHHHHhccccceec
Q 010353 20 DLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFT 68 (512)
Q Consensus 20 ~~v~~V~~~Ll~~G~ltl~~I~~~t~l~~~~Vr~aL~vLIQhn~V~~~~ 68 (512)
+.--.|..+|. .|++|..+|++.++++++.|...|-.|.+.|+|.-..
T Consensus 37 ~~~~~iL~~l~-~~~~~~~ela~~l~~s~~tvs~~l~~Le~~glv~r~~ 84 (146)
T 2gxg_A 37 YLDFLVLRATS-DGPKTMAYLANRYFVTQSAITASVDKLEEMGLVVRVR 84 (146)
T ss_dssp HHHHHHHHHHT-TSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHh-cCCcCHHHHHHHhCCCchhHHHHHHHHHHCCCEEeec
Confidence 44456777777 9999999999999999999999999999999998433
No 113
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=83.31 E-value=14 Score=31.53 Aligned_cols=61 Identities=18% Similarity=0.347 Sum_probs=48.8
Q ss_pred hCchHHHHHHHHHhcCCCcchhhhhhhcCCCcccHHHHHHHHhhcccceEEEEecCCCCCceEEE
Q 010353 368 YGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTGARQSQFLL 432 (512)
Q Consensus 368 ~G~~~~Ri~r~l~~~~~l~eek~i~~~ami~~k~~r~~Ly~L~~~g~v~~QEvpk~~~~~~t~~l 432 (512)
+...-++|+..|...|.+ ...+|++...++...+-.++.+|.+.|||.-+.-|. ..|..++
T Consensus 44 lt~~q~~iL~~l~~~~~~-t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~---DrR~~~l 104 (162)
T 3k0l_A 44 ISLPQFTALSVLAAKPNL-SNAKLAERSFIKPQSANKILQDLLANGWIEKAPDPT---HGRRILV 104 (162)
T ss_dssp CCHHHHHHHHHHHHCTTC-CHHHHHHHHTSCGGGHHHHHHHHHHTTSEEEEECCS---SSCCEEE
T ss_pred CCHHHHHHHHHHHHCCCC-CHHHHHHHHCCCHHHHHHHHHHHHHCcCeEecCCCC---cCCeeEe
Confidence 445567888888888887 999999999999999999999999999996654443 3454443
No 114
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=83.20 E-value=9.8 Score=29.52 Aligned_cols=65 Identities=9% Similarity=0.066 Sum_probs=50.1
Q ss_pred CchHHHHHHHHHhcCCCcchhhhhhhcCCCcccHHHHHHHHhhcccceEEEEecCCCCCceEEEEEEehH
Q 010353 369 GRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTGARQSQFLLWKVNRQ 438 (512)
Q Consensus 369 G~~~~Ri~r~l~~~~~l~eek~i~~~ami~~k~~r~~Ly~L~~~g~v~~QEvpk~~~~~~t~~lw~v~~~ 438 (512)
+..-.+|+..|...+.+ ...+|++...++...+-..|.+|.+.|+|.-...| +. .+ ...|++...
T Consensus 15 ~~~~~~iL~~L~~~~~~-~~~ela~~l~is~~tvs~~l~~L~~~gli~~~~~~-~~--~r-~~~~~lt~~ 79 (100)
T 1ub9_A 15 NPVRLGIMIFLLPRRKA-PFSQIQKVLDLTPGNLDSHIRVLERNGLVKTYKVI-AD--RP-RTVVEITDF 79 (100)
T ss_dssp SHHHHHHHHHHHHHSEE-EHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEEEC-SS--SC-EEEEEECHH
T ss_pred ChHHHHHHHHHHhcCCc-CHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEecC-CC--cc-eEEEEECHH
Confidence 34457789988877777 99999999999999999999999999999766554 21 22 344555544
No 115
>4a5n_A Uncharacterized HTH-type transcriptional regulato; activator, DNA binding, MARR-like; 1.81A {Bacillus subtilis} PDB: 4a5m_A
Probab=83.09 E-value=3.2 Score=35.24 Aligned_cols=68 Identities=10% Similarity=0.099 Sum_probs=51.4
Q ss_pred hhhc-hhHHHHHHHHHhcCCCcHHHHHHhc-CCCHHHHHHHHHHHHhccccceecccCCCCCCCCCCCccEEEechhh
Q 010353 16 NHFG-DLVAKVCECLLRKGPLTRQNVKRYT-ELSDEQVKNALLVLIQQNCVQAFTTEQPDGFADGPKANTQYVVLFDN 91 (512)
Q Consensus 16 ~~FG-~~v~~V~~~Ll~~G~ltl~~I~~~t-~l~~~~Vr~aL~vLIQhn~V~~~~~~~~~~~~~~~~~~~~Y~~~~~~ 91 (512)
+.+| ...-.|...|. .|++++.+|.+.+ +++++.+-..|-.|.+.|+|. -....+ .+..++|++-..+
T Consensus 21 ~~lg~kW~l~IL~~L~-~g~~rf~eL~~~l~gIs~~~Ls~~L~~Le~~GLV~-R~~~~~------d~r~v~y~LT~~G 90 (131)
T 4a5n_A 21 DVIGGKWKGILFYHMI-DGKKRFNEFRRICPSITQRMLTLQLRELEADGIVH-REVYHQ------VPPKVEYSLTEFG 90 (131)
T ss_dssp HHHCSSSHHHHHHHHT-TSCBCHHHHHHHCTTSCHHHHHHHHHHHHHTTSEE-EEEECS------SSCEEEEEECTTG
T ss_pred HHHcCcCHHHHHHHHh-cCCcCHHHHHHHhcccCHHHHHHHHHHHHHCCCEE-EEecCC------CCCeEEEEECHhH
Confidence 4444 45556667775 8999999999999 999999999999999999998 333221 1235788887654
No 116
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=82.89 E-value=1.7 Score=33.32 Aligned_cols=44 Identities=20% Similarity=0.253 Sum_probs=38.8
Q ss_pred HHHHHHHHHhc------CCCcHHHHHHhcCCCHHHHHHHHHHHHhccccc
Q 010353 22 VAKVCECLLRK------GPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQ 65 (512)
Q Consensus 22 v~~V~~~Ll~~------G~ltl~~I~~~t~l~~~~Vr~aL~vLIQhn~V~ 65 (512)
...|.++|-.+ |+.|+.+|+..+++++..|+.=|..|.+-|++.
T Consensus 6 ~~~IL~~I~~~i~~~~g~~psv~EIa~~lgvS~~TVrr~L~~Le~kG~I~ 55 (77)
T 2jt1_A 6 VTKIISIVQERQNMDDGAPVKTRDIADAAGLSIYQVRLYLEQLHDVGVLE 55 (77)
T ss_dssp HHHHHHHHHHHHHHHTTSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHHhhccCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCcEE
Confidence 34566666666 889999999999999999999999999999997
No 117
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=82.80 E-value=6 Score=33.56 Aligned_cols=49 Identities=6% Similarity=0.115 Sum_probs=43.6
Q ss_pred hCchHHHHHHHHHhcCCCcchhhhhhhcCCCcccHHHHHHHHhhcccceE
Q 010353 368 YGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLM 417 (512)
Q Consensus 368 ~G~~~~Ri~r~l~~~~~l~eek~i~~~ami~~k~~r~~Ly~L~~~g~v~~ 417 (512)
+...-.+|+..|...+.+ ...+|++...++...+-.++.+|.+.|||.-
T Consensus 39 lt~~~~~iL~~l~~~~~~-t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r 87 (154)
T 2qww_A 39 LTIQQLAMINVIYSTPGI-SVADLTKRLIITGSSAAANVDGLISLGLVVK 87 (154)
T ss_dssp CCHHHHHHHHHHHHSTTE-EHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred CCHHHHHHHHHHHHCCCC-CHHHHHHHHCCCHHHHHHHHHHHHHCCCEEe
Confidence 445567899999888777 9999999999999999999999999999965
No 118
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=82.80 E-value=9.8 Score=31.74 Aligned_cols=48 Identities=13% Similarity=-0.017 Sum_probs=42.0
Q ss_pred hhHHHHHHHHHhcCCCcHHHHHHhcCCCHHHHHHHHHHHHhcccccee
Q 010353 20 DLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAF 67 (512)
Q Consensus 20 ~~v~~V~~~Ll~~G~ltl~~I~~~t~l~~~~Vr~aL~vLIQhn~V~~~ 67 (512)
+.--.|..+|..+|++|..+|++.++++++.|-..+-.|.+.|+|.-.
T Consensus 36 ~~q~~vL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l~~L~~~Glv~r~ 83 (140)
T 3hsr_A 36 YTGYIVLMAIENDEKLNIKKLGERVFLDSGTLTPLLKKLEKKDYVVRT 83 (140)
T ss_dssp HHHHHHHHHSCTTCEEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHHcCCcCHHHHHHHHCCChhhHHHHHHHHHHCCCeEec
Confidence 444557777778899999999999999999999999999999999843
No 119
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=82.52 E-value=9.4 Score=32.74 Aligned_cols=51 Identities=16% Similarity=0.281 Sum_probs=44.8
Q ss_pred HhCchHHHHHHHHHhcCCCcchhhhhhhcCCCcccHHHHHHHHhhcccceEE
Q 010353 367 RYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLME 418 (512)
Q Consensus 367 ~~G~~~~Ri~r~l~~~~~l~eek~i~~~ami~~k~~r~~Ly~L~~~g~v~~Q 418 (512)
-+...-.+|+..|...|.+ ...+|++...++...+-.++.+|.+.|||.-.
T Consensus 50 glt~~q~~vL~~l~~~~~~-t~~eLa~~l~~~~~~vs~~l~~Le~~Glv~r~ 100 (161)
T 3e6m_A 50 KLPTPKLRLLSSLSAYGEL-TVGQLATLGVMEQSTTSRTVDQLVDEGLAARS 100 (161)
T ss_dssp TCCHHHHHHHHHHHHHSEE-EHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEC
T ss_pred CCCHHHHHHHHHHHhCCCC-CHHHHHHHHCCCHHHHHHHHHHHHHCCCEEee
Confidence 4556677889999888877 99999999999999999999999999999544
No 120
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=82.49 E-value=7.7 Score=32.17 Aligned_cols=53 Identities=19% Similarity=0.385 Sum_probs=45.7
Q ss_pred hCchHHHHHHHHHhcCCCcchhhhhhhcCCCcccHHHHHHHHhhcccceEEEEe
Q 010353 368 YGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLV 421 (512)
Q Consensus 368 ~G~~~~Ri~r~l~~~~~l~eek~i~~~ami~~k~~r~~Ly~L~~~g~v~~QEvp 421 (512)
+...-.+|+..|...+.+ ...+|++...++...+...+.+|.+.|||....-|
T Consensus 34 lt~~~~~iL~~l~~~~~~-t~~ela~~l~~s~~~vs~~l~~Le~~glv~r~~~~ 86 (142)
T 2fbi_A 34 LTEQQWRVIRILRQQGEM-ESYQLANQACILRPSMTGVLARLERDGIVRRWKAP 86 (142)
T ss_dssp CCHHHHHHHHHHHHHCSE-EHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEEET
T ss_pred CCHHHHHHHHHHHHcCCC-CHHHHHHHHCCCHhHHHHHHHHHHHCCCEEeecCC
Confidence 445667889999888777 99999999999999999999999999999765433
No 121
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=82.46 E-value=1.7 Score=34.17 Aligned_cols=46 Identities=22% Similarity=0.229 Sum_probs=40.4
Q ss_pred HHHHHHHHHcccCCHHHHHHHHhhcccCCCccCHHHHHHHHHHHHhcccccccC
Q 010353 114 VELVQGLLEHGRLTLKQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCP 167 (512)
Q Consensus 114 ~~Iv~~lL~~G~l~~~~li~~~~~~~~~~~~~~~~~l~~~f~~Lv~~~fi~rv~ 167 (512)
..|++.|-.+|.++++++.+.+. .+...|+.-+..|.+.|+|.|++
T Consensus 5 ~~Il~~L~~~g~vsv~eLA~~l~--------VS~~TIRrDL~~Le~~G~l~R~~ 50 (87)
T 2k02_A 5 MEVRDMLALQGRMEAKQLSARLQ--------TPQPLIDAMLERMEAMGKVVRIS 50 (87)
T ss_dssp HHHHHHHHHSCSEEHHHHHHHTT--------CCHHHHHHHHHHHHTTCCSEEEE
T ss_pred HHHHHHHHHcCCCcHHHHHHHHC--------cCHHHHHHHHHHHHHCCCEEEEe
Confidence 46888889999999999998874 26788999999999999999984
No 122
>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85
Probab=82.37 E-value=1.5 Score=34.81 Aligned_cols=63 Identities=10% Similarity=0.249 Sum_probs=47.0
Q ss_pred hHHHHHHHHHhcC--CCcchhhhhhhcCCCcccHHHHHHHHhhcccceEEEEecCC-CCCceEEEEEEe
Q 010353 371 DAYRIFRLLSKSG--RLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTG-ARQSQFLLWKVN 436 (512)
Q Consensus 371 ~~~Ri~r~l~~~~--~l~eek~i~~~ami~~k~~r~~Ly~L~~~g~v~~QEvpk~~-~~~~t~~lw~v~ 436 (512)
.-..|+++|...| .+ .+++|++..-++...+-.+|-+|.+.|||.-. +... ...+.++||-+.
T Consensus 21 ~q~~Vl~~I~~~g~~gi-~qkeLa~~~~l~~~tvt~iLk~LE~kglIkr~--~~~~~~~rKvy~Ly~l~ 86 (91)
T 2dk5_A 21 QEKLVYQIIEDAGNKGI-WSRDVRYKSNLPLTEINKILKNLESKKLIKAV--KSVAASKKKVYMLYNLS 86 (91)
T ss_dssp SHHHHHHHHHHHCTTCE-EHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEE--CCSSCSSCCEEEESSSC
T ss_pred HHHHHHHHHHHcCCCCc-CHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEe--cCCCCCCcEEEEEeccC
Confidence 3456888888744 66 99999999999999999999999999999322 2222 345556665544
No 123
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=82.28 E-value=6.8 Score=33.54 Aligned_cols=48 Identities=13% Similarity=0.163 Sum_probs=42.6
Q ss_pred hhHHHHHHHHHhcCCCcHHHHHHhcCCCHHHHHHHHHHHHhcccccee
Q 010353 20 DLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAF 67 (512)
Q Consensus 20 ~~v~~V~~~Ll~~G~ltl~~I~~~t~l~~~~Vr~aL~vLIQhn~V~~~ 67 (512)
+.--.|..+|..+|++|..+|++.+++++..|-..+-.|.+.|+|.-.
T Consensus 50 ~~q~~vL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~ 97 (159)
T 3s2w_A 50 SGQFPFLMRLYREDGINQESLSDYLKIDKGTTARAIQKLVDEGYVFRQ 97 (159)
T ss_dssp TTTHHHHHHHHHSCSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEe
Confidence 344567888888999999999999999999999999999999999843
No 124
>2f2e_A PA1607; transcription factor, helix-TRUN-helix, APC5613, structural genomics, PSI, protein structure initiative; HET: GLC; 1.85A {Pseudomonas aeruginosa} SCOP: a.4.5.69
Probab=82.16 E-value=4.5 Score=34.77 Aligned_cols=61 Identities=11% Similarity=0.130 Sum_probs=47.3
Q ss_pred hHHHHHHHHHhcCCCcHHHHHHhcCCCHHHHHHHHHHHHhccccceecccCCCCCCCCCCCccEEEechh
Q 010353 21 LVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQPDGFADGPKANTQYVVLFD 90 (512)
Q Consensus 21 ~v~~V~~~Ll~~G~ltl~~I~~~t~l~~~~Vr~aL~vLIQhn~V~~~~~~~~~~~~~~~~~~~~Y~~~~~ 90 (512)
..-.|...|. .|++++.+|.+.++++++.+-..|-.|.++|+|.-...+. ++ ..+|.+...
T Consensus 25 w~l~IL~~L~-~g~~~~~eLa~~lgis~~tls~~L~~Le~~GlI~r~~~~~-------d~-~~~y~LT~~ 85 (146)
T 2f2e_A 25 WSMLIVRDAF-EGLTRFGEFQKSLGLAKNILAARLRNLVEHGVMVAVPAES-------GS-HQEYRLTDK 85 (146)
T ss_dssp SHHHHHHHHH-TTCCSHHHHHHHHCCCHHHHHHHHHHHHHTTSEEEEECSS-------SS-CEEEEECHH
T ss_pred hHHHHHHHHH-hCCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEEEecCC-------CC-eEEEEECch
Confidence 3345666664 7999999999999999999999999999999998433221 23 567877744
No 125
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=82.14 E-value=2.9 Score=35.91 Aligned_cols=69 Identities=16% Similarity=0.165 Sum_probs=51.4
Q ss_pred CchHHHHHHHHHhcCCCcchhhhhhhcCCCcccHHHHHHHHhhcccce-EEEEecCC---CCCceEEEEEEehH
Q 010353 369 GRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLL-MEKLVVTG---ARQSQFLLWKVNRQ 438 (512)
Q Consensus 369 G~~~~Ri~r~l~~~~~l~eek~i~~~ami~~k~~r~~Ly~L~~~g~v~-~QEvpk~~---~~~~t~~lw~v~~~ 438 (512)
...-.+|+++|...+.+ ...+|++...++...++..+.+|.+.|+|. ..-+.... .+-..|..|.++..
T Consensus 8 d~~d~~il~~L~~~~~~-s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~~~~~~~~~~g~~~~a~v~v~~~~~ 80 (151)
T 2dbb_A 8 DRVDMQLVKILSENSRL-TYRELADILNTTRQRIARRIDKLKKLGIIRKFTIIPDIDKLGYMYAIVLIKSKVPS 80 (151)
T ss_dssp CHHHHHHHHHHHHCTTC-CHHHHHHHTTSCHHHHHHHHHHHHHHTSEEEEEEEECTGGGTEEEEEEEEEESSHH
T ss_pred CHHHHHHHHHHHHcCCC-CHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEEecCChHHhCCCEEEEEEEEeCCC
Confidence 33445799999888888 999999999999999999999999999996 33222221 12234666677654
No 126
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=82.06 E-value=11 Score=31.31 Aligned_cols=51 Identities=10% Similarity=0.042 Sum_probs=44.1
Q ss_pred chHHHHHHHHHhcC--CCcchhhhhhhcCCCcccHHHHHHHHhhcccceEEEEe
Q 010353 370 RDAYRIFRLLSKSG--RLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLV 421 (512)
Q Consensus 370 ~~~~Ri~r~l~~~~--~l~eek~i~~~ami~~k~~r~~Ly~L~~~g~v~~QEvp 421 (512)
..-.+|+..|...+ .+ ...+|++...++...+-.++.+|.+.|||.-..-|
T Consensus 31 ~~~~~vL~~l~~~~~~~~-t~~ela~~l~~~~~tvs~~l~~Le~~Gli~r~~~~ 83 (139)
T 3eco_A 31 NEQGHTLGYLYAHQQDGL-TQNDIAKALQRTGPTVSNLLRNLERKKLIYRYVDA 83 (139)
T ss_dssp HHHHHHHHHHHHSTTTCE-EHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECC
T ss_pred HHHHHHHHHHHhcCCCCc-CHHHHHHHhCCCcccHHHHHHHHHHCCCEeecCCC
Confidence 45678899998876 66 99999999999999999999999999999765443
No 127
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=81.83 E-value=7.1 Score=33.61 Aligned_cols=48 Identities=10% Similarity=0.065 Sum_probs=42.7
Q ss_pred hhHHHHHHHHHhcCCCcHHHHHHhcCCCHHHHHHHHHHHHhcccccee
Q 010353 20 DLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAF 67 (512)
Q Consensus 20 ~~v~~V~~~Ll~~G~ltl~~I~~~t~l~~~~Vr~aL~vLIQhn~V~~~ 67 (512)
+.--.|..+|..+|++|..+|++.+++++..|-..+-.|.+.|+|.-.
T Consensus 46 ~~q~~iL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~ 93 (162)
T 3k0l_A 46 LPQFTALSVLAAKPNLSNAKLAERSFIKPQSANKILQDLLANGWIEKA 93 (162)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHHTSCGGGHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCcCeEec
Confidence 444468888888999999999999999999999999999999999843
No 128
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=81.75 E-value=4.4 Score=33.66 Aligned_cols=51 Identities=12% Similarity=0.186 Sum_probs=44.9
Q ss_pred hCchHHHHHHHHHhcCCCcchhhhhhhcCCCcccHHHHHHHHhhcccceEEE
Q 010353 368 YGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEK 419 (512)
Q Consensus 368 ~G~~~~Ri~r~l~~~~~l~eek~i~~~ami~~k~~r~~Ly~L~~~g~v~~QE 419 (512)
+...-.+|+..|..++.+ ...+|++...++...+-..+.+|.+.|||....
T Consensus 36 l~~~~~~iL~~l~~~~~~-t~~ela~~l~~~~~tvs~~l~~L~~~glv~r~~ 86 (140)
T 2nnn_A 36 LTPTQWAALVRLGETGPC-PQNQLGRLTAMDAATIKGVVERLDKRGLIQRSA 86 (140)
T ss_dssp CCHHHHHHHHHHHHHSSB-CHHHHHHHTTCCHHHHHHHHHHHHHTTCEEEEE
T ss_pred CCHHHHHHHHHHHHcCCC-CHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeeC
Confidence 445667899999888877 999999999999999999999999999997653
No 129
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=81.58 E-value=5.9 Score=33.35 Aligned_cols=47 Identities=11% Similarity=0.106 Sum_probs=42.4
Q ss_pred hhHHHHHHHHHhcCCCcHHHHHHhcCCCHHHHHHHHHHHHhccccce
Q 010353 20 DLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQA 66 (512)
Q Consensus 20 ~~v~~V~~~Ll~~G~ltl~~I~~~t~l~~~~Vr~aL~vLIQhn~V~~ 66 (512)
+.--.|..+|..+|++|..+|++.++++++.|...+-.|.+.|+|.-
T Consensus 40 ~~~~~iL~~l~~~~~~t~~ela~~l~~~~~tvs~~l~~Le~~Glv~r 86 (148)
T 3nrv_A 40 MTEWRIISVLSSASDCSVQKISDILGLDKAAVSRTVKKLEEKKYIEV 86 (148)
T ss_dssp HHHHHHHHHHHHSSSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEC
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEe
Confidence 44456888888999999999999999999999999999999999983
No 130
>1t6s_A Conserved hypothetical protein; A winged helix-turn-helix, structural genomics, BSGC structu by NIH, protein structure initiative, PSI; 1.95A {Chlorobium tepidum tls} SCOP: a.4.5.60 a.4.5.60
Probab=81.57 E-value=12 Score=32.83 Aligned_cols=81 Identities=10% Similarity=0.149 Sum_probs=59.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHhcCCCcchhhhhhhcCCCcccHHHHHHHHhhcccceEEEEecCCCC
Q 010353 347 DFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTGAR 426 (512)
Q Consensus 347 ~~~~~~~~lr~~~le~~v~~~~G~~~~Ri~r~l~~~~~l~eek~i~~~ami~~k~~r~~Ly~L~~~g~v~~QEvpk~~~~ 426 (512)
+|...++.+... --..++...+..++.++.-++-. +--+|++.-.++ +..++.+|.+.|+|. |+++...|
T Consensus 75 ~~~~~v~~~~~~----~~~~~LS~aaLEtLaiIay~qPi-TR~eI~~irGv~---~~~~v~~L~e~glI~--e~g~~~~~ 144 (162)
T 1t6s_A 75 EFADLVRQLLAP----VIQRRLSRSMLEVLAVVAWHQPV-TKGEIQQIRGAS---PDYSIDRLLARGLIE--VRGRADSP 144 (162)
T ss_dssp GGHHHHHHHHSC----HHHHHHHHHHHHHHHHHHHHCSE-EHHHHHHHHTCC---CCSHHHHHHHTTSEE--EEEECSST
T ss_pred HHHHHHHHHhcc----cccCccCHHHHHHHHHHHHcCCc-CHHHHHHHHCCC---HHHHHHHHHHCCCEE--EccccCCC
Confidence 666665544321 12346788888999999988666 999999999998 778999999999994 45554457
Q ss_pred CceEEEEEEehH
Q 010353 427 QSQFLLWKVNRQ 438 (512)
Q Consensus 427 ~~t~~lw~v~~~ 438 (512)
+| -++|.++..
T Consensus 145 GR-p~ly~tT~~ 155 (162)
T 1t6s_A 145 GR-PLQYGTTEV 155 (162)
T ss_dssp TC-CEEEEECHH
T ss_pred CC-CeEEEECHH
Confidence 88 677777644
No 131
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=81.29 E-value=7.7 Score=32.82 Aligned_cols=48 Identities=23% Similarity=0.156 Sum_probs=42.9
Q ss_pred chhHHHHHHHHHhcCCCcHHHHHHhcCCCHHHHHHHHHHHHhccccce
Q 010353 19 GDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQA 66 (512)
Q Consensus 19 G~~v~~V~~~Ll~~G~ltl~~I~~~t~l~~~~Vr~aL~vLIQhn~V~~ 66 (512)
.+.--.|..+|..+|++|..+|++.+++++..|-..+-.|.+.|+|.-
T Consensus 40 t~~q~~iL~~l~~~~~~~~~eLa~~l~~~~~~vs~~l~~L~~~Glv~r 87 (149)
T 4hbl_A 40 TYSQYLVMLTLWEENPQTLNSIGRHLDLSSNTLTPMLKRLEQSGWVKR 87 (149)
T ss_dssp CHHHHHHHHHHHHSSSEEHHHHHHHHTCCHHHHHHHHHHHHHHTSEEC
T ss_pred CHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEee
Confidence 344557788888899999999999999999999999999999999983
No 132
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=81.20 E-value=13 Score=31.62 Aligned_cols=53 Identities=21% Similarity=0.192 Sum_probs=45.3
Q ss_pred hCchHHHHHHHHHhcCCCcchhhhhhhcCCCcccHHHHHHHHhhcccceEEEEe
Q 010353 368 YGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLV 421 (512)
Q Consensus 368 ~G~~~~Ri~r~l~~~~~l~eek~i~~~ami~~k~~r~~Ly~L~~~g~v~~QEvp 421 (512)
+...-.+|+..|...+.+ ...+|++...++...+...+.+|.+.|||.-..-|
T Consensus 50 lt~~~~~iL~~l~~~~~~-t~~ela~~l~is~~tvs~~l~~Le~~Gli~r~~~~ 102 (162)
T 3cjn_A 50 LSTAKMRALAILSAKDGL-PIGTLGIFAVVEQSTLSRALDGLQADGLVRREVDS 102 (162)
T ss_dssp CCHHHHHHHHHHHHSCSE-EHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEC-
T ss_pred CCHHHHHHHHHHHHCCCC-CHHHHHHHHCCChhHHHHHHHHHHHCCCEEecCCC
Confidence 445567899999888877 99999999999999999999999999999765433
No 133
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=81.15 E-value=10 Score=31.84 Aligned_cols=51 Identities=10% Similarity=0.259 Sum_probs=44.3
Q ss_pred CchHHHHHHHHHhcCCCcchhhhhhhcCCCcccHHHHHHHHhhcccceEEEE
Q 010353 369 GRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKL 420 (512)
Q Consensus 369 G~~~~Ri~r~l~~~~~l~eek~i~~~ami~~k~~r~~Ly~L~~~g~v~~QEv 420 (512)
...-.+|+..|...|.+ ...+|++...++...+-..+.+|.+.|||....-
T Consensus 41 ~~~~~~iL~~l~~~~~~-t~~ela~~l~~~~~tvs~~l~~Le~~Glv~r~~~ 91 (150)
T 2rdp_A 41 TPPQFVALQWLLEEGDL-TVGELSNKMYLACSTTTDLVDRMERNGLVARVRD 91 (150)
T ss_dssp CHHHHHHHHHHHHHCSB-CHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEC
T ss_pred CHHHHHHHHHHHHcCCC-CHHHHHHHHCCCchhHHHHHHHHHHCCCeeecCC
Confidence 34567889999888877 9999999999999999999999999999976543
No 134
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=81.12 E-value=12 Score=31.21 Aligned_cols=48 Identities=8% Similarity=0.277 Sum_probs=42.3
Q ss_pred hHHHHHHHHHh-cCCCcchhhhhhhcCCCcccHHHHHHHHhhcccceEEE
Q 010353 371 DAYRIFRLLSK-SGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEK 419 (512)
Q Consensus 371 ~~~Ri~r~l~~-~~~l~eek~i~~~ami~~k~~r~~Ly~L~~~g~v~~QE 419 (512)
.-.+|+..|.. .|.+ ...+|++...++...+-..+.+|.+.|||.-+.
T Consensus 36 ~~~~iL~~l~~~~~~~-~~~~la~~l~i~~~~vs~~l~~Le~~glv~r~~ 84 (147)
T 2hr3_A 36 SQLVVLGAIDRLGGDV-TPSELAAAERMRSSNLAALLRELERGGLIVRHA 84 (147)
T ss_dssp HHHHHHHHHHHTTSCB-CHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred HHHHHHHHHHHcCCCC-CHHHHHHHhCCChhhHHHHHHHHHHCCCEeeCC
Confidence 34678888888 7777 999999999999999999999999999996553
No 135
>1z05_A Transcriptional regulator, ROK family; structural genomics, protein structure initiative, midwest center for structural genomics; 2.00A {Vibrio cholerae o1 biovar eltor} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=80.83 E-value=1.2 Score=45.62 Aligned_cols=66 Identities=17% Similarity=0.227 Sum_probs=52.0
Q ss_pred HHHHHHHHHhcCCCcHHHHHHhcCCCHHHHHHHHHHHHhccccceec-ccCCCCCCCCCCCccEEEechhh
Q 010353 22 VAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFT-TEQPDGFADGPKANTQYVVLFDN 91 (512)
Q Consensus 22 v~~V~~~Ll~~G~ltl~~I~~~t~l~~~~Vr~aL~vLIQhn~V~~~~-~~~~~~~~~~~~~~~~Y~~~~~~ 91 (512)
-..|.+.|..+|++|..+|++.++|++..|.+.+--|++.|+|.-.. ....++ .++.+.|.+|.+.
T Consensus 41 ~~~il~~l~~~~~~sr~ela~~~gls~~tv~~~v~~L~~~gli~~~~~~~~s~~----GR~~~~l~~~~~~ 107 (429)
T 1z05_A 41 AGRVYKLIDQKGPISRIDLSKESELAPASITKITRELIDAHLIHETTVQEAISR----GRPAVGLQTNNLG 107 (429)
T ss_dssp HHHHHHHHHHHCSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECHHHHHHH----TSCCEEEEECCTT
T ss_pred HHHHHHHHHHcCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeccccCCCCC----CCCCeEEEECCCC
Confidence 35689999999999999999999999999999999999999998543 211111 2334678888664
No 136
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=80.70 E-value=11 Score=32.05 Aligned_cols=62 Identities=15% Similarity=0.351 Sum_probs=48.4
Q ss_pred hCchHHHHHHHHHhcCCCcchhhhhhhcCCCcccHHHHHHHHhhcccceEEEEecCCCCCceEEEE
Q 010353 368 YGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTGARQSQFLLW 433 (512)
Q Consensus 368 ~G~~~~Ri~r~l~~~~~l~eek~i~~~ami~~k~~r~~Ly~L~~~g~v~~QEvpk~~~~~~t~~lw 433 (512)
+...-++|+..|...+.+ ...+|++...++...+-.++.+|.+.|||.-..-|. ..|..++.
T Consensus 48 lt~~q~~vL~~l~~~~~~-t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~---DrR~~~l~ 109 (159)
T 3s2w_A 48 IGSGQFPFLMRLYREDGI-NQESLSDYLKIDKGTTARAIQKLVDEGYVFRQRDEK---DRRSYRVF 109 (159)
T ss_dssp CCTTTHHHHHHHHHSCSE-EHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECC------CCEEEE
T ss_pred CCHHHHHHHHHHHHCCCC-CHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEecCCC---CCCeeEEE
Confidence 445568899999888788 999999999999999999999999999996553332 34554443
No 137
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=80.68 E-value=9.1 Score=29.97 Aligned_cols=46 Identities=20% Similarity=0.129 Sum_probs=40.7
Q ss_pred hhHHHHHHHHHhcCCCcHHHH----HHhcCCCHHHHHHHHHHHHhccccc
Q 010353 20 DLVAKVCECLLRKGPLTRQNV----KRYTELSDEQVKNALLVLIQQNCVQ 65 (512)
Q Consensus 20 ~~v~~V~~~Ll~~G~ltl~~I----~~~t~l~~~~Vr~aL~vLIQhn~V~ 65 (512)
+.--.|...|..+|.+|..+| ++..+++++.|-..|-.|.+.|+|.
T Consensus 8 ~~q~~iL~~l~~~~~~~~~el~~~la~~l~is~~tvs~~l~~Le~~gli~ 57 (99)
T 1tbx_A 8 YPEAIVLAYLYDNEGIATYDLYKKVNAEFPMSTATFYDAKKFLIQEGFVK 57 (99)
T ss_dssp CHHHHHHHHHTTCTTCBHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHHcCCcCHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCEE
Confidence 334467788888899999999 8889999999999999999999997
No 138
>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis}
Probab=80.46 E-value=1.5 Score=36.83 Aligned_cols=49 Identities=18% Similarity=0.194 Sum_probs=41.7
Q ss_pred CchHHHHHHHHHhc--CCCcchhhhhhhcCCCcccHHHHHHHHhhcccceE
Q 010353 369 GRDAYRIFRLLSKS--GRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLM 417 (512)
Q Consensus 369 G~~~~Ri~r~l~~~--~~l~eek~i~~~ami~~k~~r~~Ly~L~~~g~v~~ 417 (512)
...|.+|+..|..+ +..+..++|++...+|...++++|..|.+.|||..
T Consensus 8 ~~~al~iL~~la~~~~~~~~s~~ela~~~~i~~~~v~~il~~L~~~Glv~~ 58 (129)
T 2y75_A 8 GRYGLTIMIELAKKHGEGPTSLKSIAQTNNLSEHYLEQLVSPLRNAGLVKS 58 (129)
T ss_dssp HHHHHHHHHHHHHTTTSCCBCHHHHHHHTTSCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHHhCCCCCcCCHHHHHHHHCcCHHHHHHHHHHHHHCCceEe
Confidence 34588899888764 34449999999999999999999999999999854
No 139
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=80.44 E-value=8.2 Score=32.75 Aligned_cols=50 Identities=10% Similarity=0.235 Sum_probs=43.1
Q ss_pred hCchHHHHHHHHHhcCCCcchhhhhhhcCCCcccHHHHHHHHhhcccceEE
Q 010353 368 YGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLME 418 (512)
Q Consensus 368 ~G~~~~Ri~r~l~~~~~l~eek~i~~~ami~~k~~r~~Ly~L~~~g~v~~Q 418 (512)
+...-++|+..|...|.+ ...+|++...++...+-.++.+|.+.|||.-.
T Consensus 41 lt~~~~~iL~~l~~~~~~-t~~ela~~l~i~~~tvs~~l~~Le~~Glv~r~ 90 (155)
T 3cdh_A 41 LRVPEWRVLACLVDNDAM-MITRLAKLSLMEQSRMTRIVDQMDARGLVTRV 90 (155)
T ss_dssp CCHHHHHHHHHHSSCSCB-CHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEC
T ss_pred CCHHHHHHHHHHHHCCCc-CHHHHHHHHCCCHHHHHHHHHHHHHCCCEEec
Confidence 345567888888777777 99999999999999999999999999999543
No 140
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=80.43 E-value=2.9 Score=35.89 Aligned_cols=51 Identities=20% Similarity=0.222 Sum_probs=44.6
Q ss_pred hchhHHHHHHHHHhcCCCcHHHHHHhcCCCHHHHHHHHHHHHhccccceec
Q 010353 18 FGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFT 68 (512)
Q Consensus 18 FG~~v~~V~~~Ll~~G~ltl~~I~~~t~l~~~~Vr~aL~vLIQhn~V~~~~ 68 (512)
+.+.=.+|...|...|+.|..+|++.++++++.|..-|-.|.+.|+|.-+.
T Consensus 5 ld~~~~~iL~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~~ 55 (150)
T 2w25_A 5 LDDIDRILVRELAADGRATLSELATRAGLSVSAVQSRVRRLESRGVVQGYS 55 (150)
T ss_dssp CCHHHHHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEE
T ss_pred cCHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEE
Confidence 345556788889889999999999999999999999999999999996443
No 141
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=80.37 E-value=5.5 Score=33.37 Aligned_cols=47 Identities=15% Similarity=0.068 Sum_probs=40.0
Q ss_pred hhHHHHHHHHHhcCCCcHHHHHHhcCCCHHHHHHHHHHHHhccccce
Q 010353 20 DLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQA 66 (512)
Q Consensus 20 ~~v~~V~~~Ll~~G~ltl~~I~~~t~l~~~~Vr~aL~vLIQhn~V~~ 66 (512)
+.--.|..+|..+|++|..+|++.++++++.|-..+-.|.+.|+|.-
T Consensus 37 ~~~~~vL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l~~L~~~Glv~r 83 (142)
T 3ech_A 37 PPDVHVLKLIDEQRGLNLQDLGRQMCRDKALITRKIRELEGRNLVRR 83 (142)
T ss_dssp HHHHHHHHHHHHTTTCCHHHHHHHHC---CHHHHHHHHHHHTTSEEC
T ss_pred HHHHHHHHHHHhCCCcCHHHHHHHhCCCHHHHHHHHHHHHHCCCEee
Confidence 55566888899999999999999999999999999999999999983
No 142
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=80.30 E-value=6.7 Score=32.75 Aligned_cols=51 Identities=16% Similarity=0.332 Sum_probs=44.8
Q ss_pred hCchHHHHHHHHHhcCCCcchhhhhhhcCCCcccHHHHHHHHhhcccceEEE
Q 010353 368 YGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEK 419 (512)
Q Consensus 368 ~G~~~~Ri~r~l~~~~~l~eek~i~~~ami~~k~~r~~Ly~L~~~g~v~~QE 419 (512)
+...-.+|+..|...+.+ ...+|++...++...+-..+.+|.+.|||.-..
T Consensus 27 lt~~~~~iL~~l~~~~~~-t~~~la~~l~~s~~~vs~~l~~Le~~gli~r~~ 77 (144)
T 1lj9_A 27 LTRGQYLYLVRVCENPGI-IQEKIAELIKVDRTTAARAIKRLEEQGFIYRQE 77 (144)
T ss_dssp CTTTHHHHHHHHHHSTTE-EHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCHHHHHHHHHHHHCcCc-CHHHHHHHHCCCHhHHHHHHHHHHHCCCEEeec
Confidence 445567899999888777 999999999999999999999999999997653
No 143
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=80.14 E-value=2.6 Score=36.97 Aligned_cols=65 Identities=14% Similarity=0.217 Sum_probs=51.1
Q ss_pred HHHHHHHHhcCCCcchhhhhhhcCCCcccHHHHHHHHhhcccce-EEEEecCC---CCCceEEEEEEehH
Q 010353 373 YRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLL-MEKLVVTG---ARQSQFLLWKVNRQ 438 (512)
Q Consensus 373 ~Ri~r~l~~~~~l~eek~i~~~ami~~k~~r~~Ly~L~~~g~v~-~QEvpk~~---~~~~t~~lw~v~~~ 438 (512)
.+|+++|.+++.+ .-.+|++...++...++.-+.+|.+.|+|. +.-+.... .+...|..|.++..
T Consensus 6 ~~il~~L~~~~~~-s~~~la~~lg~s~~tv~~rl~~L~~~g~i~~~~a~~~~~~lG~~~~a~v~v~v~~~ 74 (162)
T 3i4p_A 6 RKILRILQEDSTL-AVADLAKKVGLSTTPCWRRIQKMEEDGVIRRRVALLDPVKVNTKVTVFVSIRTASH 74 (162)
T ss_dssp HHHHHHHTTCSCS-CHHHHHHHHTCCHHHHHHHHHHHHHTTSSCCCCCCCCTTTTTCCEEEEEEEECCSC
T ss_pred HHHHHHHHHCCCC-CHHHHHHHHCcCHHHHHHHHHHHHHCCCeeeceeeeCHHHhcCcEEEEEEEEEcCC
Confidence 5799999998898 999999999999999999999999999995 22221111 23456777888753
No 144
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=80.07 E-value=2.4 Score=35.93 Aligned_cols=45 Identities=11% Similarity=0.231 Sum_probs=40.7
Q ss_pred HHHHHHHHhcCCCcHHHHHHhcCCCHHHHHHHHHHHHhcccccee
Q 010353 23 AKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAF 67 (512)
Q Consensus 23 ~~V~~~Ll~~G~ltl~~I~~~t~l~~~~Vr~aL~vLIQhn~V~~~ 67 (512)
.+|...|...|++|..+|++..+++++.|+..|-.|.+.|+|.-+
T Consensus 7 ~~il~~L~~~~~~~~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~ 51 (141)
T 1i1g_A 7 KIILEILEKDARTPFTEIAKKLGISETAVRKRVKALEEKGIIEGY 51 (141)
T ss_dssp HHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHHHTSSCCC
T ss_pred HHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEecc
Confidence 467778888899999999999999999999999999999999633
No 145
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=79.73 E-value=21 Score=30.41 Aligned_cols=47 Identities=11% Similarity=0.109 Sum_probs=42.0
Q ss_pred hhHHHHHHHHHhcCCCcHHHHHHhcCCCHHHHHHHHHHHHhccccce
Q 010353 20 DLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQA 66 (512)
Q Consensus 20 ~~v~~V~~~Ll~~G~ltl~~I~~~t~l~~~~Vr~aL~vLIQhn~V~~ 66 (512)
+.--.|..+|..+|++|..+|++.+++++..|-..|-.|.+.|+|.-
T Consensus 53 ~~q~~vL~~l~~~~~~t~~eLa~~l~~~~~~vs~~l~~Le~~Glv~r 99 (161)
T 3e6m_A 53 TPKLRLLSSLSAYGELTVGQLATLGVMEQSTTSRTVDQLVDEGLAAR 99 (161)
T ss_dssp HHHHHHHHHHHHHSEEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEe
Confidence 34445788888899999999999999999999999999999999983
No 146
>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B
Probab=79.55 E-value=2.8 Score=31.91 Aligned_cols=48 Identities=17% Similarity=0.299 Sum_probs=41.5
Q ss_pred chhHHHHHHHHHhcCCCcHHHHHHhcC----CCHHHHHHHHHHHHhccccce
Q 010353 19 GDLVAKVCECLLRKGPLTRQNVKRYTE----LSDEQVKNALLVLIQQNCVQA 66 (512)
Q Consensus 19 G~~v~~V~~~Ll~~G~ltl~~I~~~t~----l~~~~Vr~aL~vLIQhn~V~~ 66 (512)
++.=..|..+|...|++|..+|+...+ +++..|...|-.|.+.|+|..
T Consensus 8 t~~e~~vL~~L~~~~~~t~~ei~~~l~~~~~~s~~Tv~~~l~rL~~kGlv~r 59 (82)
T 1p6r_A 8 SDAELEVMKVIWKHSSINTNEVIKELSKTSTWSPKTIQTMLLRLIKKGALNH 59 (82)
T ss_dssp CHHHHHHHHHHHTSSSEEHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTSEEE
T ss_pred CHHHHHHHHHHHcCCCCCHHHHHHHHhhcCCccHHHHHHHHHHHHHCCCeEE
Confidence 444456888888899999999998864 789999999999999999984
No 147
>2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, STR genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} SCOP: a.4.5.28
Probab=79.39 E-value=8.2 Score=35.08 Aligned_cols=49 Identities=4% Similarity=-0.094 Sum_probs=42.7
Q ss_pred hhHHHHHHHHHhcCCCcHHHHHHhcCCCHHHHHHHHHHHHhccccceec
Q 010353 20 DLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFT 68 (512)
Q Consensus 20 ~~v~~V~~~Ll~~G~ltl~~I~~~t~l~~~~Vr~aL~vLIQhn~V~~~~ 68 (512)
+.--.|..+|..+|++|..+|++.+++++..|-..|-.|.+.|+|.-..
T Consensus 48 ~~q~~iL~~L~~~~~~t~~eLa~~l~i~~stvs~~l~~Le~~GlV~r~~ 96 (207)
T 2fxa_A 48 INEHHILWIAYQLNGASISEIAKFGVMHVSTAFNFSKKLEERGYLRFSK 96 (207)
T ss_dssp HHHHHHHHHHHHHTSEEHHHHHHHTTCCHHHHHHHHHHHHHHTSEEEEC
T ss_pred HHHHHHHHHHHHCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEec
Confidence 4445677888888999999999999999999999999999999998433
No 148
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48
Probab=79.24 E-value=2.9 Score=32.81 Aligned_cols=52 Identities=17% Similarity=0.221 Sum_probs=42.0
Q ss_pred HHhhhchhHHH--HHHHHHhcC-CCcHHHHHHhcCCCHHH-HHHHHHHHHhccccc
Q 010353 14 ITNHFGDLVAK--VCECLLRKG-PLTRQNVKRYTELSDEQ-VKNALLVLIQQNCVQ 65 (512)
Q Consensus 14 v~~~FG~~v~~--V~~~Ll~~G-~ltl~~I~~~t~l~~~~-Vr~aL~vLIQhn~V~ 65 (512)
+...||..... |...|..+| .+|..+|++.++++++. |-..|-.|.+.|+|.
T Consensus 7 l~~~~g~~~~~l~~L~~l~~~~~~~t~~eLa~~l~is~~t~vs~~l~~Le~~Glv~ 62 (95)
T 2pg4_A 7 LRLQFGHLIRILPTLLEFEKKGYEPSLAEIVKASGVSEKTFFMGLKDRLIRAGLVK 62 (95)
T ss_dssp GGSBHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHCCCHHHHHTTHHHHHHHTTSEE
T ss_pred HHHHhhhHHHHHHHHHHHHhcCCCCCHHHHHHHHCCCchHHHHHHHHHHHHCCCee
Confidence 44566755432 344555677 89999999999999999 999999999999998
No 149
>3qph_A TRMB, A global transcription regulator; transcriptional regulator; HET: SUC; 2.99A {Pyrococcus furiosus}
Probab=79.02 E-value=0.91 Score=45.30 Aligned_cols=78 Identities=12% Similarity=0.025 Sum_probs=61.0
Q ss_pred hHHHHHHHHHhcCCCcchhhhhhhcCCCcccHHHHHHHHhhcccceEEEEecCCCCCceEEEEEEehHHHHHHHHHHHHH
Q 010353 371 DAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTGARQSQFLLWKVNRQILWKHVLDEMFH 450 (512)
Q Consensus 371 ~~~Ri~r~l~~~~~l~eek~i~~~ami~~k~~r~~Ly~L~~~g~v~~QEvpk~~~~~~t~~lw~v~~~~~~~~~l~~~~k 450 (512)
.-+++++.|+..|.. .-.+|++.+.+|...+...|.+|.+.|+|..+ .+ .| ..+.-++++.+...+..+.-.
T Consensus 19 ~ea~vY~~Ll~~g~~-t~~eia~~~gv~~~~Vy~~L~~L~~~GlV~~~---~g-~p---~~y~av~p~~~l~~l~~~~~~ 90 (342)
T 3qph_A 19 YEILTYWTLLVYGPS-TAKEISTKSGIPYNRVYDTISSLKLRGFVTEI---EG-TP---KVYAAYSPRIAFFRFKKELED 90 (342)
T ss_dssp HTTSCSHHHHHHHHH-HHSCCSSSTTSSSCSCCHHHHHHHHHTSEEEE---CC-TT---CEEEECCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCC-CHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE---cC-ce---eEEEEcCHHHHHHHHHHHHHH
Confidence 345678888888888 99999999999999999999999999999876 12 23 335578888888887777655
Q ss_pred HHHHHH
Q 010353 451 AALNLS 456 (512)
Q Consensus 451 ~~~nl~ 456 (512)
.+.++.
T Consensus 91 ~~~~L~ 96 (342)
T 3qph_A 91 IMKKLE 96 (342)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 554433
No 150
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=78.94 E-value=3.1 Score=35.49 Aligned_cols=47 Identities=17% Similarity=0.226 Sum_probs=42.3
Q ss_pred hHHHHHHHHHhcCCCcHHHHHHhcCCCHHHHHHHHHHHHhcccccee
Q 010353 21 LVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAF 67 (512)
Q Consensus 21 ~v~~V~~~Ll~~G~ltl~~I~~~t~l~~~~Vr~aL~vLIQhn~V~~~ 67 (512)
.=.+|...|...|+.|..+|++.++++++.|+.-|-.|.+.|++.-+
T Consensus 6 ~d~~il~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~ 52 (144)
T 2cfx_A 6 IDLNIIEELKKDSRLSMRELGRKIKLSPPSVTERVRQLESFGIIKQY 52 (144)
T ss_dssp HHHHHHHHHHHCSCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEE
Confidence 34478888888999999999999999999999999999999999744
No 151
>3u1d_A Uncharacterized protein; GNTR-superfamily, structural genomics, PSI-biology, midwest for structural genomics, MCSG; 1.80A {Halomicrobium mukohataei}
Probab=78.67 E-value=16 Score=31.64 Aligned_cols=105 Identities=12% Similarity=0.090 Sum_probs=71.3
Q ss_pred HHHHHHhhhchhHHHHHHHHHhc--CCCcHHHHHHhcC-CCHHHHHHHHHHHHhccccceecccCCCCCCCCCCCccEEE
Q 010353 10 AVHVITNHFGDLVAKVCECLLRK--GPLTRQNVKRYTE-LSDEQVKNALLVLIQQNCVQAFTTEQPDGFADGPKANTQYV 86 (512)
Q Consensus 10 c~~iv~~~FG~~v~~V~~~Ll~~--G~ltl~~I~~~t~-l~~~~Vr~aL~vLIQhn~V~~~~~~~~~~~~~~~~~~~~Y~ 86 (512)
|.....-.-++.=..|...|+.+ |..|+.+|....+ ++...|.+-|-.|...|+|.....+. +.+...++..+|.
T Consensus 19 ~~~~~~~l~~~tR~~IL~~Ll~~p~~~~ta~eL~~~l~~lS~aTVyrhL~~L~eaGLV~~~~~~~--~~~~rGrP~k~Y~ 96 (151)
T 3u1d_A 19 ELERRRFVLHETRLDVLHQILAQPDGVLSVEELLYRNPDETEANLRYHVDELVDRGIVEKIPVPR--AKSVDDPPTTFYA 96 (151)
T ss_dssp HHHHHHHHCCHHHHHHHHHHHHSTTSCBCHHHHHHHCTTSCHHHHHHHHHHHHHTTSEEEEECCC--CTTSSSCCCEEEE
T ss_pred HHHHHHHhcchHHHHHHHHHHcCCCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHCCCeEEeecCc--CcccCCCCceEEE
Confidence 34445555567778899999987 4589999998887 99999999999999999999654432 1111133457898
Q ss_pred echhhHHHHhchhhHHHHHHHHhhhhHH-HHHHHHHHcccCC
Q 010353 87 VLFDNILHRVRFAKFLTILSQEFDQQCV-ELVQGLLEHGRLT 127 (512)
Q Consensus 87 ~~~~~il~rlR~pr~l~~i~~~~G~~a~-~Iv~~lL~~G~l~ 127 (512)
+...+--. .. .|...++ ..+..|-..+.-|
T Consensus 97 LT~~Gr~~----------l~-~y~~la~~~alr~l~~~v~~t 127 (151)
T 3u1d_A 97 VTGEGIAL----------LR-AVSMYEEAAVWRSVYEQMERT 127 (151)
T ss_dssp ECHHHHHH----------HH-HTTCSTHHHHTHHHHHHSCCC
T ss_pred ECHHHHHH----------HH-HhHHHhHHHHHHHHHHHhhcc
Confidence 88665221 11 2544444 6666666666444
No 152
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=78.63 E-value=7.3 Score=32.23 Aligned_cols=47 Identities=13% Similarity=0.058 Sum_probs=41.6
Q ss_pred hhHHHHHHHHHhc--CCCcHHHHHHhcCCCHHHHHHHHHHHHhccccce
Q 010353 20 DLVAKVCECLLRK--GPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQA 66 (512)
Q Consensus 20 ~~v~~V~~~Ll~~--G~ltl~~I~~~t~l~~~~Vr~aL~vLIQhn~V~~ 66 (512)
+.--.|..+|..+ |++|..+|++..+++++.|-..|-.|.+.|+|..
T Consensus 37 ~~q~~vL~~l~~~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r 85 (127)
T 2frh_A 37 FEEFAVLTYISENKEKEYYLKDIINHLNYKQPQVVKAVKILSQEDYFDK 85 (127)
T ss_dssp HHHHHHHHHHHHTCCSEEEHHHHHHHSSSHHHHHHHHHHHHHHTTSSCC
T ss_pred HHHHHHHHHHHhccCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEe
Confidence 3444577888888 8999999999999999999999999999999983
No 153
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=78.54 E-value=3.1 Score=36.29 Aligned_cols=49 Identities=20% Similarity=0.228 Sum_probs=43.4
Q ss_pred hhHHHHHHHHHhcCCCcHHHHHHhcCCCHHHHHHHHHHHHhccccceec
Q 010353 20 DLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFT 68 (512)
Q Consensus 20 ~~v~~V~~~Ll~~G~ltl~~I~~~t~l~~~~Vr~aL~vLIQhn~V~~~~ 68 (512)
+.-.+|...|...|++|..+|++.++++++.|+.-|-.|.+.|++.-+.
T Consensus 10 ~~~~~il~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~~ 58 (162)
T 2p5v_A 10 KTDIKILQVLQENGRLTNVELSERVALSPSPCLRRLKQLEDAGIVRQYA 58 (162)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEeeec
Confidence 3445788889899999999999999999999999999999999997443
No 154
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=78.44 E-value=4.3 Score=34.77 Aligned_cols=68 Identities=12% Similarity=0.080 Sum_probs=50.9
Q ss_pred chHHHHHHHHHhcCCCcchhhhhhhcCCCcccHHHHHHHHhhcccceEEEEecCC----CCCceEEEEE-EehH
Q 010353 370 RDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTG----ARQSQFLLWK-VNRQ 438 (512)
Q Consensus 370 ~~~~Ri~r~l~~~~~l~eek~i~~~ami~~k~~r~~Ly~L~~~g~v~~QEvpk~~----~~~~t~~lw~-v~~~ 438 (512)
..-.+|+++|...|.+ ...+|++...++...++..+.+|.+.|+|.-....-.. .+-..++.|. ++..
T Consensus 7 ~~~~~iL~~L~~~~~~-s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~~~~~d~~~~g~~~~a~v~~~~~~~~ 79 (150)
T 2w25_A 7 DIDRILVRELAADGRA-TLSELATRAGLSVSAVQSRVRRLESRGVVQGYSARINPEAVGHLLSAFVAITPLDPS 79 (150)
T ss_dssp HHHHHHHHHHHHCTTC-CHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEEEEECTGGGTCCEEEEEEEEESCTT
T ss_pred HHHHHHHHHHHHcCCC-CHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEEeccChhHcccceEEEEEEEEcCCC
Confidence 3446899999888888 99999999999999999999999999999544332222 2223455566 6654
No 155
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=78.39 E-value=13 Score=31.41 Aligned_cols=45 Identities=16% Similarity=0.157 Sum_probs=40.6
Q ss_pred hhHHHHHHHHHhcCCCcHHHHHHhcCCCHHHHHHHHHHHHhccccc
Q 010353 20 DLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQ 65 (512)
Q Consensus 20 ~~v~~V~~~Ll~~G~ltl~~I~~~t~l~~~~Vr~aL~vLIQhn~V~ 65 (512)
+.--.|..+| ..|++|..+|++.++++++.|-..+-.|.+.|+|.
T Consensus 38 ~~q~~iL~~l-~~~~~t~~eLa~~l~~~~~~vs~~l~~Le~~Glv~ 82 (151)
T 3kp7_A 38 AEQSHVLNML-SIEALTVGQITEKQGVNKAAVSRRVKKLLNAELVK 82 (151)
T ss_dssp HHHHHHHHHH-HHSCBCHHHHHHHHCSCSSHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHH-HcCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEE
Confidence 3344577888 89999999999999999999999999999999998
No 156
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=78.30 E-value=27 Score=28.69 Aligned_cols=48 Identities=15% Similarity=0.184 Sum_probs=42.7
Q ss_pred hhHHHHHHHHHhcC--CCcHHHHHHhcCCCHHHHHHHHHHHHhcccccee
Q 010353 20 DLVAKVCECLLRKG--PLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAF 67 (512)
Q Consensus 20 ~~v~~V~~~Ll~~G--~ltl~~I~~~t~l~~~~Vr~aL~vLIQhn~V~~~ 67 (512)
+.--.|..+|..+| ++|..+|++.++++++.|-..+-.|.+.|+|.-.
T Consensus 31 ~~~~~vL~~l~~~~~~~~t~~ela~~l~~~~~tvs~~l~~Le~~Gli~r~ 80 (139)
T 3eco_A 31 NEQGHTLGYLYAHQQDGLTQNDIAKALQRTGPTVSNLLRNLERKKLIYRY 80 (139)
T ss_dssp HHHHHHHHHHHHSTTTCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHhcCCCCcCHHHHHHHhCCCcccHHHHHHHHHHCCCEeec
Confidence 45567888888887 9999999999999999999999999999999843
No 157
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=78.15 E-value=24 Score=31.22 Aligned_cols=50 Identities=14% Similarity=0.116 Sum_probs=41.6
Q ss_pred chhHHHHHHHHHh--cCCCcHHHHHHhcCCCHHHHHHHHHHHHhccccceec
Q 010353 19 GDLVAKVCECLLR--KGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFT 68 (512)
Q Consensus 19 G~~v~~V~~~Ll~--~G~ltl~~I~~~t~l~~~~Vr~aL~vLIQhn~V~~~~ 68 (512)
.+.--.|..+|.. .|++|..+|++.++++++.|-..|-.|.+.|+|.-..
T Consensus 40 t~~q~~vL~~L~~~~~~~~t~~eLa~~l~is~~tvs~~l~~Le~~GlV~r~~ 91 (189)
T 3nqo_A 40 TSRQYMTILSILHLPEEETTLNNIARKMGTSKQNINRLVANLEKNGYVDVIP 91 (189)
T ss_dssp CHHHHHHHHHHHHSCGGGCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CHHHHHHHHHHHhccCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEecc
Confidence 3444556667765 6799999999999999999999999999999998433
No 158
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=78.13 E-value=9.4 Score=31.85 Aligned_cols=50 Identities=10% Similarity=0.153 Sum_probs=44.0
Q ss_pred CchHHHHHHHHHhcCCCcchhhhhhhcCCCcccHHHHHHHHhhcccceEEE
Q 010353 369 GRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEK 419 (512)
Q Consensus 369 G~~~~Ri~r~l~~~~~l~eek~i~~~ami~~k~~r~~Ly~L~~~g~v~~QE 419 (512)
...-.+|+..|...|.+ ...+|++...++...+-.++.+|.+.|||.-+.
T Consensus 36 t~~~~~iL~~l~~~~~~-t~~eLa~~l~~~~~~vs~~l~~L~~~Glv~r~~ 85 (143)
T 3oop_A 36 TPEQWSVLEGIEANEPI-SQKEIALWTKKDTPTVNRIVDVLLRKELIVREI 85 (143)
T ss_dssp CHHHHHHHHHHHHHSSE-EHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred CHHHHHHHHHHHHcCCc-CHHHHHHHHCCCHhhHHHHHHHHHHCCCeeccC
Confidence 45567888888888888 999999999999999999999999999996543
No 159
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=78.11 E-value=3 Score=35.87 Aligned_cols=49 Identities=16% Similarity=0.350 Sum_probs=43.4
Q ss_pred hhHHHHHHHHHhcCCCcHHHHHHhcCCCHHHHHHHHHHHHhccccceec
Q 010353 20 DLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFT 68 (512)
Q Consensus 20 ~~v~~V~~~Ll~~G~ltl~~I~~~t~l~~~~Vr~aL~vLIQhn~V~~~~ 68 (512)
+.=.+|...|...|+.|..+|++.++++++.|+.-|-.|.+.|+|..+.
T Consensus 7 ~~~~~il~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~~ 55 (151)
T 2cyy_A 7 EIDKKIIKILQNDGKAPLREISKITGLAESTIHERIRKLRESGVIKKFT 55 (151)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHHCSCHHHHHHHHHHHHHHTSSCCCC
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEE
Confidence 4445788889899999999999999999999999999999999997443
No 160
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=78.11 E-value=18 Score=30.05 Aligned_cols=49 Identities=16% Similarity=0.186 Sum_probs=42.5
Q ss_pred hCchHHHHHHHHHhcCCCcchhhhhhhcCCCcccHHHHHHHHhhcccceEE
Q 010353 368 YGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLME 418 (512)
Q Consensus 368 ~G~~~~Ri~r~l~~~~~l~eek~i~~~ami~~k~~r~~Ly~L~~~g~v~~Q 418 (512)
+...-.+|+..|. .+.+ ...+|++...++...+...+.+|.+.|||.-.
T Consensus 35 l~~~~~~iL~~l~-~~~~-~~~ela~~l~~s~~tvs~~l~~Le~~glv~r~ 83 (146)
T 2gxg_A 35 LSYLDFLVLRATS-DGPK-TMAYLANRYFVTQSAITASVDKLEEMGLVVRV 83 (146)
T ss_dssp CCHHHHHHHHHHT-TSCB-CHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCHHHHHHHHHHh-cCCc-CHHHHHHHhCCCchhHHHHHHHHHHCCCEEee
Confidence 3455677888887 7777 99999999999999999999999999999654
No 161
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=78.09 E-value=3.2 Score=35.70 Aligned_cols=50 Identities=12% Similarity=0.135 Sum_probs=44.2
Q ss_pred chhHHHHHHHHHhcCCCcHHHHHHhcCCCHHHHHHHHHHHHhccccceec
Q 010353 19 GDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFT 68 (512)
Q Consensus 19 G~~v~~V~~~Ll~~G~ltl~~I~~~t~l~~~~Vr~aL~vLIQhn~V~~~~ 68 (512)
.+.=.+|...|...|+.|..+|++.+++++..|+.-|-.|.+.|++.-+.
T Consensus 7 d~~d~~il~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~~ 56 (152)
T 2cg4_A 7 DNLDRGILEALMGNARTAYAELAKQFGVSPETIHVRVEKMKQAGIITGAR 56 (152)
T ss_dssp CHHHHHHHHHHHHCTTSCHHHHHHHHTSCHHHHHHHHHHHHHHTSEEEEE
T ss_pred CHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHcCCcceEE
Confidence 34455788899999999999999999999999999999999999998444
No 162
>3df8_A Possible HXLR family transcriptional factor; APC89000, structural genomics, midwest center for structural genomics, MCSG; 1.65A {Thermoplasma volcanium} SCOP: a.4.5.0
Probab=77.92 E-value=6.9 Score=31.80 Aligned_cols=61 Identities=13% Similarity=0.158 Sum_probs=48.3
Q ss_pred chhHHHHHHHHHhcCCCc--HHHHHHhc-CCCHHHHHHHHHHHHhccccceecccCCCCCCCCCCCccEEEechhh
Q 010353 19 GDLVAKVCECLLRKGPLT--RQNVKRYT-ELSDEQVKNALLVLIQQNCVQAFTTEQPDGFADGPKANTQYVVLFDN 91 (512)
Q Consensus 19 G~~v~~V~~~Ll~~G~lt--l~~I~~~t-~l~~~~Vr~aL~vLIQhn~V~~~~~~~~~~~~~~~~~~~~Y~~~~~~ 91 (512)
|+..-.|...|. .|+.+ +.+|.+.. +++++.+-+-|-.|.++|+|.- ... . .++|++...+
T Consensus 26 ~~wrl~IL~~L~-~g~~~~~~~eL~~~l~gis~~~ls~~L~~Le~~GlV~r-~~~--r--------~~~y~LT~~G 89 (111)
T 3df8_A 26 KKYTMLIISVLG-NGSTRQNFNDIRSSIPGISSTILSRRIKDLIDSGLVER-RSG--Q--------ITTYALTEKG 89 (111)
T ss_dssp STTHHHHHHHHT-SSSSCBCHHHHHHTSTTCCHHHHHHHHHHHHHTTSEEE-EES--S--------SEEEEECHHH
T ss_pred CccHHHHHHHHh-cCCCCCCHHHHHHHccCCCHHHHHHHHHHHHHCCCEEE-eec--C--------cEEEEECccH
Confidence 345556677765 88888 99999999 9999999999999999999983 222 1 4688888664
No 163
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=77.92 E-value=2.7 Score=36.24 Aligned_cols=66 Identities=20% Similarity=0.256 Sum_probs=50.8
Q ss_pred HHHHHHHHHhcCCCcchhhhhhhcCCCcccHHHHHHHHhhcccceEE-EEec-CC--CCCceEEEEEEehH
Q 010353 372 AYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLME-KLVV-TG--ARQSQFLLWKVNRQ 438 (512)
Q Consensus 372 ~~Ri~r~l~~~~~l~eek~i~~~ami~~k~~r~~Ly~L~~~g~v~~Q-Evpk-~~--~~~~t~~lw~v~~~ 438 (512)
-.+|++.|..+|.. .-.+|++...++...++..+.+|.+.|+|.-. -+.. .. .+...++.|.++..
T Consensus 9 ~~~il~~L~~~~~~-s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~~~~~d~~~~G~~~~a~v~v~~~~~ 78 (151)
T 2cyy_A 9 DKKIIKILQNDGKA-PLREISKITGLAESTIHERIRKLRESGVIKKFTAIIDPEALGYSMLAFILVKVKAG 78 (151)
T ss_dssp HHHHHHHHHHCTTC-CHHHHHHHHCSCHHHHHHHHHHHHHHTSSCCCCCCCCGGGGTCCEEEEEEEEECTT
T ss_pred HHHHHHHHHHcCCC-CHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEEEECHHHCCccEEEEEEEEECcc
Confidence 45789999888888 99999999999999999999999999999432 1111 11 23346778888854
No 164
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=77.86 E-value=3.5 Score=35.42 Aligned_cols=51 Identities=12% Similarity=0.201 Sum_probs=44.6
Q ss_pred hchhHHHHHHHHHhcCCCcHHHHHHhcCCCHHHHHHHHHHHHhccccceec
Q 010353 18 FGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFT 68 (512)
Q Consensus 18 FG~~v~~V~~~Ll~~G~ltl~~I~~~t~l~~~~Vr~aL~vLIQhn~V~~~~ 68 (512)
..+.-.+|...|...|+.|..+|++.+++++..|+..|-.|...|++.-+.
T Consensus 7 ld~~d~~il~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~~ 57 (151)
T 2dbb_A 7 LDRVDMQLVKILSENSRLTYRELADILNTTRQRIARRIDKLKKLGIIRKFT 57 (151)
T ss_dssp CCHHHHHHHHHHHHCTTCCHHHHHHHTTSCHHHHHHHHHHHHHHTSEEEEE
T ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEE
Confidence 344556788899999999999999999999999999999999999997443
No 165
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*
Probab=77.78 E-value=26 Score=29.21 Aligned_cols=42 Identities=10% Similarity=0.102 Sum_probs=36.9
Q ss_pred HHHHHHHhcCCCcHHHHHHhcCCCHHHHHHHHHHHHhccccc
Q 010353 24 KVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQ 65 (512)
Q Consensus 24 ~V~~~Ll~~G~ltl~~I~~~t~l~~~~Vr~aL~vLIQhn~V~ 65 (512)
.|...+-..|++|..+|++.++++++.|...|-.|.+.|+|.
T Consensus 12 ~i~~l~~~~~~~~~~ela~~l~vs~~tvs~~l~~Le~~Glv~ 53 (142)
T 1on2_A 12 QIYMLIEEKGYARVSDIAEALAVHPSSVTKMVQKLDKDEYLI 53 (142)
T ss_dssp HHHHHHHHHSSCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHhhcCCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEE
Confidence 344444567899999999999999999999999999999997
No 166
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=77.33 E-value=2.9 Score=31.85 Aligned_cols=54 Identities=15% Similarity=0.212 Sum_probs=43.2
Q ss_pred hhHHHHHHHHHHc--ccCCHHHHHHHHhhcccCCCccCHHHHHHHHHHHHhcccccccC
Q 010353 111 QQCVELVQGLLEH--GRLTLKQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCP 167 (512)
Q Consensus 111 ~~a~~Iv~~lL~~--G~l~~~~li~~~~~~~~~~~~~~~~~l~~~f~~Lv~~~fi~rv~ 167 (512)
+.-..|++.|..+ |++++.+|.+.+....+ ..+...+...+..|.+.|+|.+++
T Consensus 17 ~~r~~IL~~l~~~~~~~~s~~el~~~l~~~~~---~is~~TVyR~L~~L~~~Glv~~~~ 72 (83)
T 2fu4_A 17 LPRLKILEVLQEPDNHHVSAEDLYKRLIDMGE---EIGLATVYRVLNQFDDAGIVTRHN 72 (83)
T ss_dssp HHHHHHHHHHTSGGGSSBCHHHHHHHHHHTTC---CCCHHHHHHHHHHHHHHTSEEEEE
T ss_pred HHHHHHHHHHHhCCCCCCCHHHHHHHHHHhCC---CCCHhhHHHHHHHHHHCCCeEEEe
Confidence 4456788877776 69999999998854322 347889999999999999999875
No 167
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=77.31 E-value=4.1 Score=34.35 Aligned_cols=66 Identities=12% Similarity=0.020 Sum_probs=49.7
Q ss_pred HHHHHHHHHhcCCCcchhhhhhhcCCCcccHHHHHHHHhhcccceEEEE---ecCC-CCCceEEEEEEehH
Q 010353 372 AYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKL---VVTG-ARQSQFLLWKVNRQ 438 (512)
Q Consensus 372 ~~Ri~r~l~~~~~l~eek~i~~~ami~~k~~r~~Ly~L~~~g~v~~QEv---pk~~-~~~~t~~lw~v~~~ 438 (512)
-.+|++.|...+.+ ...+|++...++...++..|.+|.+.|+|.-.-. |+.. -+-..+..|.+...
T Consensus 6 ~~~il~~L~~~~~~-~~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~~~~~~~~~~g~~~~~~v~~~~~~~ 75 (141)
T 1i1g_A 6 DKIILEILEKDART-PFTEIAKKLGISETAVRKRVKALEEKGIIEGYTIKINPKKLGYSLVTITGVDTKPE 75 (141)
T ss_dssp HHHHHHHHHHCTTC-CHHHHHHHHTSCHHHHHHHHHHHHHHTSSCCCCCCCCSGGGTCCEEEEEEEEECGG
T ss_pred HHHHHHHHHHcCCC-CHHHHHHHHCcCHHHHHHHHHHHHHCCCEeccccccChHHhCccEEEEEEEEECch
Confidence 45788888888888 9999999999999999999999999999953211 1111 23345677777653
No 168
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=77.21 E-value=18 Score=31.16 Aligned_cols=51 Identities=12% Similarity=0.138 Sum_probs=44.7
Q ss_pred hCchHHHHHHHHHhcCCCcchhhhhhhcCCCcccHHHHHHHHhhcccceEEE
Q 010353 368 YGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEK 419 (512)
Q Consensus 368 ~G~~~~Ri~r~l~~~~~l~eek~i~~~ami~~k~~r~~Ly~L~~~g~v~~QE 419 (512)
+...-.+|+..|...+.+ ...+|++...++...+-.++.+|.+.|||.-+.
T Consensus 43 lt~~~~~iL~~L~~~~~~-t~~eLa~~l~is~~tvs~~l~~Le~~GlV~r~~ 93 (168)
T 2nyx_A 43 ITIPQFRTLVILSNHGPI-NLATLATLLGVQPSATGRMVDRLVGAELIDRLP 93 (168)
T ss_dssp CCHHHHHHHHHHHHHCSE-EHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCHHHHHHHHHHHHcCCC-CHHHHHHHhCCCHHHHHHHHHHHHHCCCEEecc
Confidence 445567889999888887 999999999999999999999999999996543
No 169
>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}
Probab=76.93 E-value=35 Score=29.23 Aligned_cols=62 Identities=18% Similarity=0.238 Sum_probs=44.9
Q ss_pred hCchHHHHHHHHHhcC--CCcchhhhhhhcCCCcccHHHHHHHHhhcccceEEEEecCCCCCceEEEE
Q 010353 368 YGRDAYRIFRLLSKSG--RLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTGARQSQFLLW 433 (512)
Q Consensus 368 ~G~~~~Ri~r~l~~~~--~l~eek~i~~~ami~~k~~r~~Ly~L~~~g~v~~QEvpk~~~~~~t~~lw 433 (512)
+...-++|+.+|...| .+ ...+|++...++...+-.++.+|.+.|||.-+.-|. ..|..++.
T Consensus 44 lt~~q~~vL~~l~~~~~~~~-t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~---DrR~~~l~ 107 (168)
T 3u2r_A 44 LSAQQYNTLRLLRSVHPEGM-ATLQIADRLISRAPDITRLIDRLDDRGLVLRTRKPE---NRRVVEVA 107 (168)
T ss_dssp CCHHHHHHHHHHHHHTTSCE-EHHHHHHHC---CTHHHHHHHHHHHTTSEEEEEETT---EEEEEEEE
T ss_pred CCHHHHHHHHHHHhcCCCCc-CHHHHHHHHCCChhhHHHHHHHHHHCCCEeecCCCC---CCCeeEeE
Confidence 3445677888888753 66 999999999999999999999999999996654433 24544443
No 170
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=76.93 E-value=3.2 Score=35.58 Aligned_cols=46 Identities=7% Similarity=0.184 Sum_probs=41.5
Q ss_pred HHHHHHHHhcCCCcHHHHHHhcCCCHHHHHHHHHHHHhccccceec
Q 010353 23 AKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFT 68 (512)
Q Consensus 23 ~~V~~~Ll~~G~ltl~~I~~~t~l~~~~Vr~aL~vLIQhn~V~~~~ 68 (512)
.+|...|...|+.|..+|++.++++++.|..-|-.|.+.|+|.-+.
T Consensus 6 ~~il~~L~~~~~~~~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~~ 51 (150)
T 2pn6_A 6 LRILKILQYNAKYSLDEIAREIRIPKATLSYRIKKLEKDGVIKGYY 51 (150)
T ss_dssp HHHHHHHTTCTTSCHHHHHHHHTSCHHHHHHHHHHHHHTTSSCCCC
T ss_pred HHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEEE
Confidence 4678888889999999999999999999999999999999997443
No 171
>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis}
Probab=76.91 E-value=5 Score=33.47 Aligned_cols=33 Identities=18% Similarity=0.327 Sum_probs=31.7
Q ss_pred CCCcHHHHHHhcCCCHHHHHHHHHHHHhccccc
Q 010353 33 GPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQ 65 (512)
Q Consensus 33 G~ltl~~I~~~t~l~~~~Vr~aL~vLIQhn~V~ 65 (512)
+++|..+|+..+++|++.|++.|-.|.+.|+|.
T Consensus 25 ~~~s~~ela~~~~i~~~~v~~il~~L~~~Glv~ 57 (129)
T 2y75_A 25 GPTSLKSIAQTNNLSEHYLEQLVSPLRNAGLVK 57 (129)
T ss_dssp CCBCHHHHHHHTTSCHHHHHHHHHHHHHTTSEE
T ss_pred CcCCHHHHHHHHCcCHHHHHHHHHHHHHCCceE
Confidence 578999999999999999999999999999997
No 172
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=76.20 E-value=8.3 Score=32.62 Aligned_cols=49 Identities=16% Similarity=0.257 Sum_probs=43.2
Q ss_pred hCchHHHHHHHHHhcCCCcchhhhhhhcCCCcccHHHHHHHHhhcccceEE
Q 010353 368 YGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLME 418 (512)
Q Consensus 368 ~G~~~~Ri~r~l~~~~~l~eek~i~~~ami~~k~~r~~Ly~L~~~g~v~~Q 418 (512)
+...-++|+..| ..+.+ ...+|++...++...+-..+.+|.+.|||.-+
T Consensus 36 lt~~q~~iL~~l-~~~~~-t~~eLa~~l~~~~~~vs~~l~~Le~~Glv~r~ 84 (151)
T 3kp7_A 36 ISAEQSHVLNML-SIEAL-TVGQITEKQGVNKAAVSRRVKKLLNAELVKLE 84 (151)
T ss_dssp CCHHHHHHHHHH-HHSCB-CHHHHHHHHCSCSSHHHHHHHHHHHTTSEEC-
T ss_pred CCHHHHHHHHHH-HcCCc-CHHHHHHHHCCCHHHHHHHHHHHHHCCCEEee
Confidence 445667899999 88888 99999999999999999999999999999664
No 173
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=75.98 E-value=12 Score=28.92 Aligned_cols=48 Identities=15% Similarity=0.182 Sum_probs=41.5
Q ss_pred chHHHHHHHHHhcCCCcchhhhhhhcCCCcccHHHHHHHHhhcccceEE
Q 010353 370 RDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLME 418 (512)
Q Consensus 370 ~~~~Ri~r~l~~~~~l~eek~i~~~ami~~k~~r~~Ly~L~~~g~v~~Q 418 (512)
..-.+|+..|...+.+ ...+|++...++...+...|..|.+.|+|.-.
T Consensus 24 ~~~~~il~~l~~~~~~-s~~ela~~l~is~~tvs~~l~~L~~~glv~~~ 71 (99)
T 3cuo_A 24 PKRLLILCMLSGSPGT-SAGELTRITGLSASATSQHLARMRDEGLIDSQ 71 (99)
T ss_dssp HHHHHHHHHHTTCCSE-EHHHHHHHHCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred hHHHHHHHHHHhCCCc-CHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 4457788888665567 99999999999999999999999999999655
No 174
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=75.40 E-value=6 Score=33.15 Aligned_cols=51 Identities=10% Similarity=0.146 Sum_probs=41.1
Q ss_pred hCchHHHHHHHHHhcCCCcchhhhhhhcCCCcccHHHHHHHHhhcccceEEE
Q 010353 368 YGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEK 419 (512)
Q Consensus 368 ~G~~~~Ri~r~l~~~~~l~eek~i~~~ami~~k~~r~~Ly~L~~~g~v~~QE 419 (512)
+...-.+|+..|..+|.+ ...+|++...++...+-..+.+|.+.|||.-..
T Consensus 35 lt~~~~~vL~~l~~~~~~-t~~eLa~~l~~~~~tvs~~l~~L~~~Glv~r~~ 85 (142)
T 3ech_A 35 LTPPDVHVLKLIDEQRGL-NLQDLGRQMCRDKALITRKIRELEGRNLVRRER 85 (142)
T ss_dssp CCHHHHHHHHHHHHTTTC-CHHHHHHHHC---CHHHHHHHHHHHTTSEEC--
T ss_pred CCHHHHHHHHHHHhCCCc-CHHHHHHHhCCCHHHHHHHHHHHHHCCCEeecc
Confidence 445678899999888888 999999999999999999999999999995443
No 175
>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B
Probab=75.26 E-value=4.6 Score=30.66 Aligned_cols=54 Identities=7% Similarity=0.227 Sum_probs=43.4
Q ss_pred hhhHHHHHHHHHHcccCCHHHHHHHHhhcccCCCccCHHHHHHHHHHHHhcccccccC
Q 010353 110 DQQCVELVQGLLEHGRLTLKQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCP 167 (512)
Q Consensus 110 G~~a~~Iv~~lL~~G~l~~~~li~~~~~~~~~~~~~~~~~l~~~f~~Lv~~~fi~rv~ 167 (512)
+..-..|+..|..+|.++..+|.+.+.... ..+...+...+..|.+.|||.+.+
T Consensus 8 t~~e~~vL~~L~~~~~~t~~ei~~~l~~~~----~~s~~Tv~~~l~rL~~kGlv~r~~ 61 (82)
T 1p6r_A 8 SDAELEVMKVIWKHSSINTNEVIKELSKTS----TWSPKTIQTMLLRLIKKGALNHHK 61 (82)
T ss_dssp CHHHHHHHHHHHTSSSEEHHHHHHHHHHHS----CCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CHHHHHHHHHHHcCCCCCHHHHHHHHhhcC----CccHHHHHHHHHHHHHCCCeEEEe
Confidence 344567888888899999999999875421 136788999999999999999874
No 176
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=75.21 E-value=12 Score=30.85 Aligned_cols=84 Identities=10% Similarity=0.139 Sum_probs=57.5
Q ss_pred chHHHHHHHHHhc--CCCcchhhhhhhcCCCcccHHHHHHHHhhcccceEEEEecCCCCCceEEEEEEehHHHHHHHHHH
Q 010353 370 RDAYRIFRLLSKS--GRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTGARQSQFLLWKVNRQILWKHVLDE 447 (512)
Q Consensus 370 ~~~~Ri~r~l~~~--~~l~eek~i~~~ami~~k~~r~~Ly~L~~~g~v~~QEvpk~~~~~~t~~lw~v~~~~~~~~~l~~ 447 (512)
..-.+|+..|... +.+ ...+|++...++...+-.++.+|.+.|||.-..-| ...|..++. +. .--..+++.
T Consensus 37 ~~q~~vL~~l~~~~~~~~-t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~~~---~D~R~~~i~-LT--~~G~~~~~~ 109 (127)
T 2frh_A 37 FEEFAVLTYISENKEKEY-YLKDIINHLNYKQPQVVKAVKILSQEDYFDKKRNE---HDERTVLIL-VN--AQQRKKIES 109 (127)
T ss_dssp HHHHHHHHHHHHTCCSEE-EHHHHHHHSSSHHHHHHHHHHHHHHTTSSCCBCCS---SSSCCCEEE-CC--SHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCc-CHHHHHHHHCCCHHHHHHHHHHHHHCCCEEecCCC---CCCCeeEEE-EC--HHHHHHHHH
Confidence 3456788888776 667 99999999999999999999999999999533222 345555554 32 223445555
Q ss_pred HHHHHHHHHHHHH
Q 010353 448 MFHAALNLSLRVS 460 (512)
Q Consensus 448 ~~k~~~nl~~R~~ 460 (512)
+...+...+...+
T Consensus 110 ~~~~~~~~~~~~~ 122 (127)
T 2frh_A 110 LLSRVNKRITEAN 122 (127)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 5555555554443
No 177
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=75.17 E-value=3.7 Score=36.40 Aligned_cols=69 Identities=19% Similarity=0.229 Sum_probs=51.8
Q ss_pred CchHHHHHHHHHhcCCCcchhhhhhhcCCCcccHHHHHHHHhhcccceEE-EEec-CC--CCCceEEEEEEehH
Q 010353 369 GRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLME-KLVV-TG--ARQSQFLLWKVNRQ 438 (512)
Q Consensus 369 G~~~~Ri~r~l~~~~~l~eek~i~~~ami~~k~~r~~Ly~L~~~g~v~~Q-Evpk-~~--~~~~t~~lw~v~~~ 438 (512)
...-.+|++.|...+.+ .-.+|++...++...++..|.+|.+.|+|.-. -+.. .. .+...|+.|.++..
T Consensus 26 d~~d~~IL~~L~~~~~~-s~~eLA~~lglS~~tv~~rl~~L~~~G~I~~~~a~vd~~~~G~~~~a~v~v~~~~~ 98 (171)
T 2e1c_A 26 DEIDKKIIKILQNDGKA-PLREISKITGLAESTIHERIRKLRESGVIKKFTAIIDPEALGYSMLAFILVKVKAG 98 (171)
T ss_dssp CHHHHHHHHHHHHCTTC-CHHHHHHHHTSCHHHHHHHHHHHHHTTSSCCCCCCCCGGGGTCCEEEEEEEEECTT
T ss_pred CHHHHHHHHHHHHcCCC-CHHHHHHHHCcCHHHHHHHHHHHHHCCCeEeeeEEECHHHcCCCEEEEEEEEECcc
Confidence 33445789999888888 99999999999999999999999999999432 1111 11 23346777888854
No 178
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=75.12 E-value=3.8 Score=35.83 Aligned_cols=46 Identities=11% Similarity=0.116 Sum_probs=42.1
Q ss_pred HHHHHHHHHhcCCCcHHHHHHhcCCCHHHHHHHHHHHHhcccccee
Q 010353 22 VAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAF 67 (512)
Q Consensus 22 v~~V~~~Ll~~G~ltl~~I~~~t~l~~~~Vr~aL~vLIQhn~V~~~ 67 (512)
=.+|...|...|++|..+|++.+++++..|+.-|-.|.+.|++.-|
T Consensus 5 d~~il~~L~~~~~~s~~~la~~lg~s~~tv~~rl~~L~~~g~i~~~ 50 (162)
T 3i4p_A 5 DRKILRILQEDSTLAVADLAKKVGLSTTPCWRRIQKMEEDGVIRRR 50 (162)
T ss_dssp HHHHHHHHTTCSCSCHHHHHHHHTCCHHHHHHHHHHHHHTTSSCCC
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeeec
Confidence 3578889999999999999999999999999999999999999833
No 179
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=74.92 E-value=16 Score=29.02 Aligned_cols=61 Identities=15% Similarity=0.165 Sum_probs=47.9
Q ss_pred chHHHHHHHHHhcCCCcchhhhhhhcCCCcccHHHHHHHHhhcccceEEEEecCCCCCceEEEEEEehHH
Q 010353 370 RDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTGARQSQFLLWKVNRQI 439 (512)
Q Consensus 370 ~~~~Ri~r~l~~~~~l~eek~i~~~ami~~k~~r~~Ly~L~~~g~v~~QEvpk~~~~~~t~~lw~v~~~~ 439 (512)
..-.+|+..|. +|.+ .-.+|++...++...+...|..|.+.|+|..... ++ ...|+++.+.
T Consensus 26 ~~r~~IL~~L~-~~~~-~~~ela~~l~is~stvs~~L~~L~~~Glv~~~~~------gr-~~~y~l~~~~ 86 (106)
T 1r1u_A 26 YNRIRIMELLS-VSEA-SVGHISHQLNLSQSNVSHQLKLLKSVHLVKAKRQ------GQ-SMIYSLDDIH 86 (106)
T ss_dssp HHHHHHHHHHH-HCCB-CHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEE------TT-EEEEEESSHH
T ss_pred HHHHHHHHHHH-hCCC-CHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEe------CC-EEEEEEChHH
Confidence 34567888887 5677 9999999999999999999999999999976531 22 3456777554
No 180
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=74.88 E-value=9.7 Score=31.51 Aligned_cols=53 Identities=17% Similarity=0.282 Sum_probs=45.8
Q ss_pred hCchHHHHHHHHHhcCCCcchhhhhhhcCCCcccHHHHHHHHhhcccceEEEEe
Q 010353 368 YGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLV 421 (512)
Q Consensus 368 ~G~~~~Ri~r~l~~~~~l~eek~i~~~ami~~k~~r~~Ly~L~~~g~v~~QEvp 421 (512)
+...-.+|+..|..++.+ ...+|++...++...+...+.+|.+.|||.....|
T Consensus 29 l~~~~~~iL~~l~~~~~~-~~~ela~~l~is~~~vs~~l~~L~~~gli~~~~~~ 81 (142)
T 3bdd_A 29 ISLTRYSILQTLLKDAPL-HQLALQERLQIDRAAVTRHLKLLEESGYIIRKRNP 81 (142)
T ss_dssp SCHHHHHHHHHHHHHCSB-CHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECS
T ss_pred CCHHHHHHHHHHHhCCCC-CHHHHHHHHCCCHHHHHHHHHHHHHCCCEEecCCC
Confidence 345677899999888887 99999999999999999999999999999765433
No 181
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=74.81 E-value=12 Score=31.53 Aligned_cols=50 Identities=10% Similarity=0.171 Sum_probs=41.0
Q ss_pred CchHHHHHHHHHhcC-CCcchhhhhhhcCCCcccHHHHHHHHhhcccceEEE
Q 010353 369 GRDAYRIFRLLSKSG-RLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEK 419 (512)
Q Consensus 369 G~~~~Ri~r~l~~~~-~l~eek~i~~~ami~~k~~r~~Ly~L~~~g~v~~QE 419 (512)
...-++|+.+|...+ .+ ...+|++...++...+-.++.+|.+.|||.-..
T Consensus 38 t~~q~~vL~~l~~~~~~~-t~~eLa~~l~i~~~tvs~~l~~Le~~Glv~r~~ 88 (150)
T 3fm5_A 38 RVRSYSVLVLACEQAEGV-NQRGVAATMGLDPSQIVGLVDELEERGLVVRTL 88 (150)
T ss_dssp CHHHHHHHHHHHHSTTCC-CSHHHHHHHTCCHHHHHHHHHHHHTTTSEEC--
T ss_pred CHHHHHHHHHHHhCCCCc-CHHHHHHHHCCCHhHHHHHHHHHHHCCCEEeeC
Confidence 345677888887654 55 999999999999999999999999999995543
No 182
>2k4b_A Transcriptional regulator; DNA binding protein, winged helix; NMR {Lactococcus lactis subsp}
Probab=74.78 E-value=3 Score=33.51 Aligned_cols=55 Identities=9% Similarity=0.160 Sum_probs=44.4
Q ss_pred hhhhHHHHHHHHHHcccCCHHHHHHHHhhcccCCCccCHHHHHHHHHHHHhcccccccC
Q 010353 109 FDQQCVELVQGLLEHGRLTLKQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCP 167 (512)
Q Consensus 109 ~G~~a~~Iv~~lL~~G~l~~~~li~~~~~~~~~~~~~~~~~l~~~f~~Lv~~~fi~rv~ 167 (512)
.+..-..|+..|..+|.++..+|.+.+..+. ..+...+...+..|.+.|||.|.+
T Consensus 33 LT~~e~~VL~~L~~~~~~t~~eL~~~l~~~~----~~s~sTVt~~L~rLe~KGlV~R~~ 87 (99)
T 2k4b_A 33 VSNAELIVMRVIWSLGEARVDEIYAQIPQEL----EWSLATVKTLLGRLVKKEMLSTEK 87 (99)
T ss_dssp CCCSCSHHHHHHHHHSCEEHHHHHHTCCGGG----CCCHHHHHHHHHHHHHTTSCEEEE
T ss_pred CCHHHHHHHHHHHhCCCCCHHHHHHHHhccc----CCCHhhHHHHHHHHHHCCCEEEEe
Confidence 3455667899999999999999998875421 236788999999999999999974
No 183
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=74.54 E-value=41 Score=28.89 Aligned_cols=49 Identities=8% Similarity=0.116 Sum_probs=41.8
Q ss_pred CchHHHHHHHHHh-cCCCcchhhhhhhcCCCcccHHHHHHHHhhcccceEE
Q 010353 369 GRDAYRIFRLLSK-SGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLME 418 (512)
Q Consensus 369 G~~~~Ri~r~l~~-~~~l~eek~i~~~ami~~k~~r~~Ly~L~~~g~v~~Q 418 (512)
...-++|+..|.. .+.+ ...+|++...++...+-.++.+|.+.|||.-+
T Consensus 52 t~~q~~vL~~L~~~~~~~-t~~eLa~~l~i~~~tvs~~l~~Le~~GlV~r~ 101 (166)
T 3deu_A 52 TQTHWVTLHNIHQLPPDQ-SQIQLAKAIGIEQPSLVRTLDQLEDKGLISRQ 101 (166)
T ss_dssp CHHHHHHHHHHHHSCSSE-EHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEC
T ss_pred CHHHHHHHHHHHHcCCCC-CHHHHHHHHCCCHhhHHHHHHHHHHCCCEEee
Confidence 4456778888877 4566 99999999999999999999999999999554
No 184
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=74.30 E-value=6.8 Score=32.72 Aligned_cols=50 Identities=12% Similarity=0.135 Sum_probs=43.6
Q ss_pred hCchHHHHHHHH-HhcCCCcchhhhhhhcCCCcccHHHHHHHHhhcccceEE
Q 010353 368 YGRDAYRIFRLL-SKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLME 418 (512)
Q Consensus 368 ~G~~~~Ri~r~l-~~~~~l~eek~i~~~ami~~k~~r~~Ly~L~~~g~v~~Q 418 (512)
+...-.+|+..| ...+.+ ...+|++...++...+...+.+|.+.|||...
T Consensus 35 l~~~~~~iL~~l~~~~~~~-t~~~la~~l~~s~~~vs~~l~~L~~~glv~r~ 85 (146)
T 2fbh_A 35 LSQARWLVLLHLARHRDSP-TQRELAQSVGVEGPTLARLLDGLESQGLVRRL 85 (146)
T ss_dssp CTTTHHHHHHHHHHCSSCC-BHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCHHHHHHHHHHHHcCCCC-CHHHHHHHhCCChhhHHHHHHHHHHCCCeeec
Confidence 345668899999 666677 99999999999999999999999999999654
No 185
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=73.92 E-value=5.6 Score=33.73 Aligned_cols=53 Identities=13% Similarity=0.155 Sum_probs=43.7
Q ss_pred hCchHHHHHHHHHhcCCCcchhhhhhhcCCCcccHHHHHHHHhhcccceEEEEe
Q 010353 368 YGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLV 421 (512)
Q Consensus 368 ~G~~~~Ri~r~l~~~~~l~eek~i~~~ami~~k~~r~~Ly~L~~~g~v~~QEvp 421 (512)
+...-++|+..|...+.+ ...+|++...++...+-.++.+|.+.|||.-+.-|
T Consensus 39 lt~~q~~iL~~l~~~~~~-~~~eLa~~l~~~~~~vs~~l~~L~~~Glv~r~~~~ 91 (149)
T 4hbl_A 39 ITYSQYLVMLTLWEENPQ-TLNSIGRHLDLSSNTLTPMLKRLEQSGWVKRERQQ 91 (149)
T ss_dssp CCHHHHHHHHHHHHSSSE-EHHHHHHHHTCCHHHHHHHHHHHHHHTSEEC----
T ss_pred CCHHHHHHHHHHHHCCCC-CHHHHHHHHCCCHHHHHHHHHHHHHCCCEeeCCCC
Confidence 445567888888888888 99999999999999999999999999999655333
No 186
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=73.86 E-value=6.7 Score=33.39 Aligned_cols=51 Identities=16% Similarity=0.185 Sum_probs=44.8
Q ss_pred hCchHHHHHHHHHhcCCCcchhhhhhhcCCCcccHHHHHHHHhhcccceEEE
Q 010353 368 YGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEK 419 (512)
Q Consensus 368 ~G~~~~Ri~r~l~~~~~l~eek~i~~~ami~~k~~r~~Ly~L~~~g~v~~QE 419 (512)
+...-.+|+..|...+.+ ...+|++...++...+-..+.+|.+.|||.-..
T Consensus 42 lt~~~~~iL~~l~~~~~~-t~~ela~~l~is~~tvs~~l~~Le~~Gli~r~~ 92 (154)
T 2eth_A 42 MKTTELYAFLYVALFGPK-KMKEIAEFLSTTKSNVTNVVDSLEKRGLVVREM 92 (154)
T ss_dssp SBHHHHHHHHHHHHHCCB-CHHHHHHHTTSCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCHHHHHHHHHHHHcCCC-CHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeeC
Confidence 455667889999888877 999999999999999999999999999996653
No 187
>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}
Probab=73.71 E-value=2.8 Score=34.54 Aligned_cols=57 Identities=16% Similarity=0.242 Sum_probs=47.5
Q ss_pred HHHHHHHHHhcCCCcchhhhhhhc--CCCcccHHHHHHHHhhcccceEEEEecCCCCCceEEEEEEehHH
Q 010353 372 AYRIFRLLSKSGRLLETDKISDTT--FVEKKDAPKILYKLWKDGYLLMEKLVVTGARQSQFLLWKVNRQI 439 (512)
Q Consensus 372 ~~Ri~r~l~~~~~l~eek~i~~~a--mi~~k~~r~~Ly~L~~~g~v~~QEvpk~~~~~~t~~lw~v~~~~ 439 (512)
-.+|+.+|.++|.+ ...+|++.. .++..-+++.|.+|.+.|+|.-. . +- +|.+...-
T Consensus 15 d~~IL~~L~~~g~~-s~~eLA~~l~~giS~~aVs~rL~~Le~~GLV~~~----~----rg--~Y~LT~~G 73 (111)
T 3b73_A 15 DDRILEIIHEEGNG-SPKELEDRDEIRISKSSVSRRLKKLADHDLLQPL----A----NG--VYVITEEG 73 (111)
T ss_dssp HHHHHHHHHHHSCB-CHHHHHTSTTCCSCHHHHHHHHHHHHHTTSEEEC----S----TT--CEEECHHH
T ss_pred HHHHHHHHHHcCCC-CHHHHHHHHhcCCCHHHHHHHHHHHHHCCCEEec----C----Cc--eEEECchH
Confidence 46799999888888 999999999 99999999999999999999642 1 11 77777553
No 188
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=73.69 E-value=7.6 Score=33.20 Aligned_cols=50 Identities=18% Similarity=0.338 Sum_probs=42.7
Q ss_pred CchHHHHHHHHHhcCCCcchhhhhhhcCCCcccHHHHHHHHhhcccceEEE
Q 010353 369 GRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEK 419 (512)
Q Consensus 369 G~~~~Ri~r~l~~~~~l~eek~i~~~ami~~k~~r~~Ly~L~~~g~v~~QE 419 (512)
...-.+|+..|...+.+ ...+|++...++...+-..+.+|.+.|||.-+.
T Consensus 48 t~~~~~iL~~l~~~~~~-t~~ela~~l~is~~tvs~~l~~Le~~glv~r~~ 97 (162)
T 2fa5_A 48 AIPEWRVITILALYPGS-SASEVSDRTAMDKVAVSRAVARLLERGFIRRET 97 (162)
T ss_dssp CHHHHHHHHHHHHSTTC-CHHHHHHHHTCCHHHHHHHHHHHHHTTSEEC--
T ss_pred CHHHHHHHHHHHhCCCC-CHHHHHHHHCCCHHHHHHHHHHHHHCCCEeeec
Confidence 34557788888887777 999999999999999999999999999996543
No 189
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=73.68 E-value=6.1 Score=32.74 Aligned_cols=50 Identities=8% Similarity=0.137 Sum_probs=43.5
Q ss_pred CchHHHHHHHHHhcCCCcchhhhhhhcCCCcccHHHHHHHHhhcccceEEE
Q 010353 369 GRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEK 419 (512)
Q Consensus 369 G~~~~Ri~r~l~~~~~l~eek~i~~~ami~~k~~r~~Ly~L~~~g~v~~QE 419 (512)
...-++|+..|..++.. ...+|++...++...+-..+.+|.+.|||.-..
T Consensus 33 t~~~~~iL~~l~~~~~~-~~~~la~~l~~~~~tvs~~l~~L~~~gli~r~~ 82 (138)
T 1jgs_A 33 TAAQFKVLCSIRCAACI-TPVELKKVLSVDLGALTRMLDRLVCKGWVERLP 82 (138)
T ss_dssp CHHHHHHHHHHHHHSSB-CHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CHHHHHHHHHHHhcCCC-CHHHHHHHHCCChHHHHHHHHHHHHCCCEEecC
Confidence 34467788888887777 999999999999999999999999999996553
No 190
>3ke2_A Uncharacterized protein YP_928783.1; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.50A {Shewanella amazonensis SB2B}
Probab=73.61 E-value=8.1 Score=31.68 Aligned_cols=78 Identities=6% Similarity=0.083 Sum_probs=56.1
Q ss_pred HHHHhcCCCcHHHHHHhcCCCHHHHHHHHHHHHhccccceecccCCCCCCCCCCCccEEEechhhHHHHhchhhHHHHHH
Q 010353 27 ECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILS 106 (512)
Q Consensus 27 ~~Ll~~G~ltl~~I~~~t~l~~~~Vr~aL~vLIQhn~V~~~~~~~~~~~~~~~~~~~~Y~~~~~~il~rlR~pr~l~~i~ 106 (512)
..|+.+|+-+++.|...||+|.+.++..|..|-+.++.--|...... ...-+|.+.-=+++.+=++-.=+..|+
T Consensus 26 a~lId~~~~nvp~L~~~TGmPRRTiQd~I~aL~elgI~~~FvQ~G~R------~n~GyY~I~dWG~idk~Wv~~~~~~i~ 99 (117)
T 3ke2_A 26 AHLMDDARHNLLSLGKLTGMPRRTLQDAIASFADIGIEVEFVQDGER------HNAGYYRIRTWGPISSAWMDTHVDEVK 99 (117)
T ss_dssp HHHHHHSCCCHHHHHHHHCCCHHHHHHHHHTGGGGTCEEEEECCTTC------CSCCEEEEEECTTBCHHHHHHHHHHHH
T ss_pred HHHHhcCCCCHHHHHHHHCCCHhHHHHHHHHhhhCCeEEEEEecccc------CCCccEEEeecCccCHHHHHHHHHHHH
Confidence 45677799999999999999999999999999999988766654211 113488887555555555444445555
Q ss_pred HHhh
Q 010353 107 QEFD 110 (512)
Q Consensus 107 ~~~G 110 (512)
...|
T Consensus 100 ~~L~ 103 (117)
T 3ke2_A 100 SLLG 103 (117)
T ss_dssp HHHT
T ss_pred HHhC
Confidence 5444
No 191
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}
Probab=73.52 E-value=32 Score=28.43 Aligned_cols=53 Identities=15% Similarity=0.142 Sum_probs=44.8
Q ss_pred HhCchHHHHHHHHHhcCCCcchhhhhhhcCCCcccHHHHHHHHhhcccceEEEEe
Q 010353 367 RYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLV 421 (512)
Q Consensus 367 ~~G~~~~Ri~r~l~~~~~l~eek~i~~~ami~~k~~r~~Ly~L~~~g~v~~QEvp 421 (512)
-++..-.+|+..|...+. ...+|++...++...+-..+.+|.+.|||.-..-|
T Consensus 34 ~lt~~~~~iL~~l~~~~~--~~~~la~~l~~~~~tvs~~l~~Le~~Glv~r~~~~ 86 (144)
T 3f3x_A 34 NLSYLDFSILKATSEEPR--SMVYLANRYFVTQSAITAAVDKLEAKGLVRRIRDS 86 (144)
T ss_dssp SCCHHHHHHHHHHHHSCE--EHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEET
T ss_pred CCCHHHHHHHHHHHHCCC--CHHHHHHHHCCChhHHHHHHHHHHHCCCEEeccCC
Confidence 356667889999887654 99999999999999999999999999999655433
No 192
>3t8r_A Staphylococcus aureus CYMR; transcriptional regulator protein, dimer, sulfenic acid, UNK function; 1.70A {Staphylococcus aureus} PDB: 3t8t_A
Probab=73.27 E-value=2.6 Score=36.19 Aligned_cols=51 Identities=14% Similarity=0.164 Sum_probs=43.3
Q ss_pred HhCchHHHHHHHHHhc--CCCcchhhhhhhcCCCcccHHHHHHHHhhcccceE
Q 010353 367 RYGRDAYRIFRLLSKS--GRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLM 417 (512)
Q Consensus 367 ~~G~~~~Ri~r~l~~~--~~l~eek~i~~~ami~~k~~r~~Ly~L~~~g~v~~ 417 (512)
+.+.-|+|++-.|..+ +..+.-++|++...+|.+-++++|.+|.+.|+|..
T Consensus 8 ~~~~yAl~~L~~La~~~~~~~~s~~~IA~~~~i~~~~l~kil~~L~~aGlv~s 60 (143)
T 3t8r_A 8 TKGRYGLTLMISLAKKEGQGCISLKSIAEENNLSDLYLEQLVGPLRNAGLIRS 60 (143)
T ss_dssp HHHHHHHHHHHHHHTTTTSCCEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEE
T ss_pred hHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCEEEe
Confidence 3456789999999764 24559999999999999999999999999999943
No 193
>3qph_A TRMB, A global transcription regulator; transcriptional regulator; HET: SUC; 2.99A {Pyrococcus furiosus}
Probab=73.01 E-value=0.17 Score=50.64 Aligned_cols=70 Identities=14% Similarity=0.116 Sum_probs=55.7
Q ss_pred hchhHHHHHHHHHhcCCCcHHHHHHhcCCCHHHHHHHHHHHHhccccceecccCCCCCCCCCCCccEEEechhhHHHHhc
Q 010353 18 FGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQPDGFADGPKANTQYVVLFDNILHRVR 97 (512)
Q Consensus 18 FG~~v~~V~~~Ll~~G~ltl~~I~~~t~l~~~~Vr~aL~vLIQhn~V~~~~~~~~~~~~~~~~~~~~Y~~~~~~il~rlR 97 (512)
|.+.-++|..+|+.+|+.|..+|++.+++|.++|..+|-.|.+.|+|.. ... ++..|+-+.++.++..++
T Consensus 16 ls~~ea~vY~~Ll~~g~~t~~eia~~~gv~~~~Vy~~L~~L~~~GlV~~-~~g---------~p~~y~av~p~~~l~~l~ 85 (342)
T 3qph_A 16 FTKYEILTYWTLLVYGPSTAKEISTKSGIPYNRVYDTISSLKLRGFVTE-IEG---------TPKVYAAYSPRIAFFRFK 85 (342)
T ss_dssp HHHHTTSCSHHHHHHHHHHHSCCSSSTTSSSCSCCHHHHHHHHHTSEEE-ECC---------TTCEEEECCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEE-EcC---------ceeEEEEcCHHHHHHHHH
Confidence 3366778999999999999999999999999999999999999999983 221 113455566777766644
No 194
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=72.90 E-value=6 Score=33.14 Aligned_cols=31 Identities=13% Similarity=0.158 Sum_probs=30.2
Q ss_pred CcHHHHHHhcCCCHHHHHHHHHHHHhccccc
Q 010353 35 LTRQNVKRYTELSDEQVKNALLVLIQQNCVQ 65 (512)
Q Consensus 35 ltl~~I~~~t~l~~~~Vr~aL~vLIQhn~V~ 65 (512)
.|..+|+..++++.+.|.++|--|++.|+|.
T Consensus 52 ps~~~LA~~l~~s~~~V~~~l~~Le~kGlI~ 82 (128)
T 2vn2_A 52 PTPAELAERMTVSAAECMEMVRRLLQKGMIA 82 (128)
T ss_dssp CCHHHHHHTSSSCHHHHHHHHHHHHHTTSSE
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHHHCCCEE
Confidence 6999999999999999999999999999998
No 195
>2h09_A Transcriptional regulator MNTR; transcription regulator, diphtheria toxin, manganese transport, structural genomics, NPPSFA; 2.10A {Escherichia coli}
Probab=72.72 E-value=5.3 Score=34.25 Aligned_cols=48 Identities=15% Similarity=0.194 Sum_probs=42.2
Q ss_pred hchhHHHHHHHHHhcCCCcHHHHHHhcCCCHHHHHHHHHHHHhccccc
Q 010353 18 FGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQ 65 (512)
Q Consensus 18 FG~~v~~V~~~Ll~~G~ltl~~I~~~t~l~~~~Vr~aL~vLIQhn~V~ 65 (512)
+-.+...|...|...|..+..+|++..+++...|..+|-.|.+.|+|.
T Consensus 38 ~~~~~~~i~~~l~~~~~~~~~~la~~l~vs~~tvs~~l~~Le~~Glv~ 85 (155)
T 2h09_A 38 IDDYVELISDLIREVGEARQVDMAARLGVSQPTVAKMLKRLATMGLIE 85 (155)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHTSCHHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHHHHHhCCCcCHHHHHHHhCcCHHHHHHHHHHHHHCCCEE
Confidence 445566677777778999999999999999999999999999999986
No 196
>3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=72.60 E-value=20 Score=30.33 Aligned_cols=47 Identities=13% Similarity=0.049 Sum_probs=41.0
Q ss_pred hhHHHHHHHH-HhcCCCcHHHHHHhcCCCHHHHHHHHHHHHhccccce
Q 010353 20 DLVAKVCECL-LRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQA 66 (512)
Q Consensus 20 ~~v~~V~~~L-l~~G~ltl~~I~~~t~l~~~~Vr~aL~vLIQhn~V~~ 66 (512)
+.--.|..+| ...|++|..+|++.+++++..|-..+-.|.+.|+|.-
T Consensus 47 ~~~~~iL~~L~~~~~~~~~~ela~~l~i~~~tvs~~l~~Le~~Gli~r 94 (160)
T 3boq_A 47 LAKFDAMAQLARNPDGLSMGKLSGALKVTNGNVSGLVNRLIKDGMVVK 94 (160)
T ss_dssp HHHHHHHHHHHHCTTCEEHHHHHHHCSSCCSCHHHHHHHHHHHTSEEE
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHCCChhhHHHHHHHHHHCCCEEe
Confidence 3444677788 4678999999999999999999999999999999983
No 197
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=72.57 E-value=18 Score=31.18 Aligned_cols=46 Identities=4% Similarity=-0.008 Sum_probs=39.9
Q ss_pred hhHHHHHHHHHh-cCCCcHHHHHHhcCCCHHHHHHHHHHHHhccccc
Q 010353 20 DLVAKVCECLLR-KGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQ 65 (512)
Q Consensus 20 ~~v~~V~~~Ll~-~G~ltl~~I~~~t~l~~~~Vr~aL~vLIQhn~V~ 65 (512)
..--.|..+|.. .|++|..+|++.+++++..|-..|-.|.+.|+|.
T Consensus 53 ~~q~~vL~~L~~~~~~~t~~eLa~~l~i~~~tvs~~l~~Le~~GlV~ 99 (166)
T 3deu_A 53 QTHWVTLHNIHQLPPDQSQIQLAKAIGIEQPSLVRTLDQLEDKGLIS 99 (166)
T ss_dssp HHHHHHHHHHHHSCSSEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHCCCHhhHHHHHHHHHHCCCEE
Confidence 334456677776 6789999999999999999999999999999998
No 198
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=72.33 E-value=6.6 Score=34.70 Aligned_cols=49 Identities=14% Similarity=0.237 Sum_probs=43.6
Q ss_pred hhHHHHHHHHHhcCCCcHHHHHHhcCCCHHHHHHHHHHHHhccccceec
Q 010353 20 DLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFT 68 (512)
Q Consensus 20 ~~v~~V~~~Ll~~G~ltl~~I~~~t~l~~~~Vr~aL~vLIQhn~V~~~~ 68 (512)
++-.+|...|...|+.|..+|++.+++++..|+.-|-.|.+.|++.-+.
T Consensus 17 ~~d~~IL~~L~~~~~~s~~eLA~~lglS~~tv~~~l~~L~~~G~I~~~~ 65 (171)
T 2ia0_A 17 DLDRNILRLLKKDARLTISELSEQLKKPESTIHFRIKKLQERGVIERYT 65 (171)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEeec
Confidence 4445888999999999999999999999999999999999999996343
No 199
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=72.12 E-value=17 Score=30.31 Aligned_cols=48 Identities=13% Similarity=0.199 Sum_probs=42.7
Q ss_pred CchHHHHHHHHHhcCCCcchhhhhhhcCCCcccHHHHHHHHhhcccceE
Q 010353 369 GRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLM 417 (512)
Q Consensus 369 G~~~~Ri~r~l~~~~~l~eek~i~~~ami~~k~~r~~Ly~L~~~g~v~~ 417 (512)
...-++|+..|...+.+ ...+|++...++...+-.++.+|.+.|||.-
T Consensus 30 t~~q~~iL~~l~~~~~~-t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r 77 (145)
T 3g3z_A 30 NYNLFAVLYTLATEGSR-TQKHIGEKWSLPKQTVSGVCKTLAGQGLIEW 77 (145)
T ss_dssp CHHHHHHHHHHHHHCSB-CHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred CHHHHHHHHHHHHCCCC-CHHHHHHHHCCCHHHHHHHHHHHHHCCCEee
Confidence 44567888888888887 9999999999999999999999999999953
No 200
>2g9w_A Conserved hypothetical protein; DNA-binding domain, bacterial transcription repressor, DNA B protein; 1.80A {Mycobacterium tuberculosis} SCOP: a.4.5.39
Probab=72.03 E-value=32 Score=28.75 Aligned_cols=49 Identities=29% Similarity=0.308 Sum_probs=42.2
Q ss_pred hchhHHHHHHHHHh-cCCCcHHHHHHhcC----CCHHHHHHHHHHHHhccccce
Q 010353 18 FGDLVAKVCECLLR-KGPLTRQNVKRYTE----LSDEQVKNALLVLIQQNCVQA 66 (512)
Q Consensus 18 FG~~v~~V~~~Ll~-~G~ltl~~I~~~t~----l~~~~Vr~aL~vLIQhn~V~~ 66 (512)
.++.=..|..+|.. .|++|..+|+...+ ++++.|...|-.|.+.|+|..
T Consensus 7 lt~~e~~vL~~L~~~~~~~t~~el~~~l~~~~~~~~~Tvt~~l~rLe~kGlv~r 60 (138)
T 2g9w_A 7 LGDLERAVMDHLWSRTEPQTVRQVHEALSARRDLAYTTVMAVLQRLAKKNLVLQ 60 (138)
T ss_dssp CCHHHHHHHHHHHTCSSCEEHHHHHHHHTTTCCCCHHHHHHHHHHHHHTTSEEE
T ss_pred CCHHHHHHHHHHHhcCCCCCHHHHHHHHhccCCCCHHHHHHHHHHHHHCCCEEE
Confidence 34445578888988 59999999999986 899999999999999999984
No 201
>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85
Probab=71.59 E-value=6 Score=31.21 Aligned_cols=43 Identities=14% Similarity=0.197 Sum_probs=39.2
Q ss_pred HHHHHHHHhcC--CCcHHHHHHhcCCCHHHHHHHHHHHHhccccc
Q 010353 23 AKVCECLLRKG--PLTRQNVKRYTELSDEQVKNALLVLIQQNCVQ 65 (512)
Q Consensus 23 ~~V~~~Ll~~G--~ltl~~I~~~t~l~~~~Vr~aL~vLIQhn~V~ 65 (512)
-.|..+|...| .++-.+|...++++...|-.+|-.|.+.|+|.
T Consensus 23 ~~Vl~~I~~~g~~gi~qkeLa~~~~l~~~tvt~iLk~LE~kglIk 67 (91)
T 2dk5_A 23 KLVYQIIEDAGNKGIWSRDVRYKSNLPLTEINKILKNLESKKLIK 67 (91)
T ss_dssp HHHHHHHHHHCTTCEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHcCCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEE
Confidence 46788888855 89999999999999999999999999999997
No 202
>1uly_A Hypothetical protein PH1932; helix-turn-helix, structural genomics, DNA binding protein; 2.50A {Pyrococcus horikoshii} SCOP: a.4.5.58 PDB: 2cwe_A
Probab=70.98 E-value=9.1 Score=34.55 Aligned_cols=50 Identities=12% Similarity=0.094 Sum_probs=44.8
Q ss_pred hhchhHHHHHHHHHhcCCCcHHHHHHhcCCCHHHHHHHHHHHHhcccccee
Q 010353 17 HFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAF 67 (512)
Q Consensus 17 ~FG~~v~~V~~~Ll~~G~ltl~~I~~~t~l~~~~Vr~aL~vLIQhn~V~~~ 67 (512)
...+.-.+|...|. .|++|..+|++.++++++.|..-|-.|.+.|+|..+
T Consensus 17 l~d~~~~~IL~~L~-~~~~s~~eLA~~lglS~stv~~~l~~Le~~GlI~~~ 66 (192)
T 1uly_A 17 MLEDTRRKILKLLR-NKEMTISQLSEILGKTPQTIYHHIEKLKEAGLVEVK 66 (192)
T ss_dssp HHSHHHHHHHHHHT-TCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred hCCHHHHHHHHHHH-cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 35567778888887 799999999999999999999999999999999855
No 203
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=70.97 E-value=17 Score=30.55 Aligned_cols=47 Identities=13% Similarity=0.010 Sum_probs=39.2
Q ss_pred hhHHHHHHHHHhcC-CCcHHHHHHhcCCCHHHHHHHHHHHHhccccce
Q 010353 20 DLVAKVCECLLRKG-PLTRQNVKRYTELSDEQVKNALLVLIQQNCVQA 66 (512)
Q Consensus 20 ~~v~~V~~~Ll~~G-~ltl~~I~~~t~l~~~~Vr~aL~vLIQhn~V~~ 66 (512)
+.--.|..+|..+| ++|..+|++.+++++..|-..+-.|.+.|+|.-
T Consensus 39 ~~q~~vL~~l~~~~~~~t~~eLa~~l~i~~~tvs~~l~~Le~~Glv~r 86 (150)
T 3fm5_A 39 VRSYSVLVLACEQAEGVNQRGVAATMGLDPSQIVGLVDELEERGLVVR 86 (150)
T ss_dssp HHHHHHHHHHHHSTTCCCSHHHHHHHTCCHHHHHHHHHHHHTTTSEEC
T ss_pred HHHHHHHHHHHhCCCCcCHHHHHHHHCCCHhHHHHHHHHHHHCCCEEe
Confidence 33445666666554 789999999999999999999999999999973
No 204
>3lwf_A LIN1550 protein, putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG; HET: SO4; 2.06A {Listeria innocua}
Probab=70.87 E-value=4.1 Score=35.74 Aligned_cols=51 Identities=16% Similarity=0.127 Sum_probs=43.1
Q ss_pred hCchHHHHHHHHHhc--CCCcchhhhhhhcCCCcccHHHHHHHHhhcccceEE
Q 010353 368 YGRDAYRIFRLLSKS--GRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLME 418 (512)
Q Consensus 368 ~G~~~~Ri~r~l~~~--~~l~eek~i~~~ami~~k~~r~~Ly~L~~~g~v~~Q 418 (512)
.+.-|+|++-.|..+ +..+..++|++...+|.+-++++|.+|.+.|+|...
T Consensus 25 ~~~yAlr~L~~LA~~~~~~~~s~~eIA~~~~i~~~~l~kil~~L~~aGlv~s~ 77 (159)
T 3lwf_A 25 KGRYGLTITLELAKRIGDGPISLRSIAQDKNLSEHYLEQLIGPLRNAGIVKSI 77 (159)
T ss_dssp HHHHHHHHHHHHHHTTTSCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHHHhcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCeEEEe
Confidence 455688888888754 344599999999999999999999999999999654
No 205
>3t8r_A Staphylococcus aureus CYMR; transcriptional regulator protein, dimer, sulfenic acid, UNK function; 1.70A {Staphylococcus aureus} PDB: 3t8t_A
Probab=70.79 E-value=7.1 Score=33.43 Aligned_cols=47 Identities=17% Similarity=0.206 Sum_probs=38.4
Q ss_pred chhHHHHHHHHHhc---CCCcHHHHHHhcCCCHHHHHHHHHHHHhccccc
Q 010353 19 GDLVAKVCECLLRK---GPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQ 65 (512)
Q Consensus 19 G~~v~~V~~~Ll~~---G~ltl~~I~~~t~l~~~~Vr~aL~vLIQhn~V~ 65 (512)
++.+=++.-+|..+ ++.|..+|+...++|++-|++.|..|.+.|+|.
T Consensus 10 ~~yAl~~L~~La~~~~~~~~s~~~IA~~~~i~~~~l~kil~~L~~aGlv~ 59 (143)
T 3t8r_A 10 GRYGLTLMISLAKKEGQGCISLKSIAEENNLSDLYLEQLVGPLRNAGLIR 59 (143)
T ss_dssp HHHHHHHHHHHHTTTTSCCEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHHhCCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCEEE
Confidence 34444555555544 468999999999999999999999999999997
No 206
>1sd4_A Penicillinase repressor; BLAI, MECI, methicillin, B-lactam, DNA binding PR; 2.00A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1xsd_A
Probab=70.76 E-value=36 Score=27.51 Aligned_cols=49 Identities=12% Similarity=0.227 Sum_probs=41.4
Q ss_pred chHHHHHHHHHhcCCCcchhhhhhhcC----CCcccHHHHHHHHhhcccceEEE
Q 010353 370 RDAYRIFRLLSKSGRLLETDKISDTTF----VEKKDAPKILYKLWKDGYLLMEK 419 (512)
Q Consensus 370 ~~~~Ri~r~l~~~~~l~eek~i~~~am----i~~k~~r~~Ly~L~~~g~v~~QE 419 (512)
..=..|+.+|..+|.+ ..++|++... ++...+..+|.+|.+.|||.-..
T Consensus 10 ~~q~~vL~~L~~~~~~-t~~el~~~l~~~~~~~~~Tvt~~l~rLe~kGlv~R~~ 62 (126)
T 1sd4_A 10 MAEWDVMNIIWDKKSV-SANEIVVEIQKYKEVSDKTIRTLITRLYKKEIIKRYK 62 (126)
T ss_dssp HHHHHHHHHHHHSSSE-EHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHHhcCCC-CHHHHHHHHhhcCCCChhhHHHHHHHHHHCCceEEEe
Confidence 3446788999888887 9999999987 47889999999999999996543
No 207
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=70.64 E-value=6.4 Score=33.77 Aligned_cols=54 Identities=11% Similarity=0.119 Sum_probs=45.0
Q ss_pred hhHHHHHHHHHHcccCCHHHHHHHHhhcccCCCccCHHHHHHHHHHHHhcccccccC
Q 010353 111 QQCVELVQGLLEHGRLTLKQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCP 167 (512)
Q Consensus 111 ~~a~~Iv~~lL~~G~l~~~~li~~~~~~~~~~~~~~~~~l~~~f~~Lv~~~fi~rv~ 167 (512)
..=..|++.|..++++++.++.+.+....+ ..+...|-.++..|++.|+|.++.
T Consensus 19 ~qR~~Il~~l~~~~h~ta~ei~~~l~~~~~---~is~~TVYR~L~~L~e~Glv~~i~ 72 (145)
T 3eyy_A 19 PQRQLVLEAVDTLEHATPDDILGEVRKTAS---GINISTVYRTLELLEELGLVSHAH 72 (145)
T ss_dssp HHHHHHHHHHHHHSSBCHHHHHHHHHTTCT---TCCHHHHHHHHHHHHHHTSEEEEE
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHhhCC---CCCHhHHHHHHHHHHHCCcEEEEE
Confidence 445678888999899999999998865432 357889999999999999999985
No 208
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=70.62 E-value=7.3 Score=30.50 Aligned_cols=46 Identities=20% Similarity=0.088 Sum_probs=39.7
Q ss_pred CchHHHHHHHHHhcCCCcchhhhhhhcCCCcccHHHHHHHHhhcccceE
Q 010353 369 GRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLM 417 (512)
Q Consensus 369 G~~~~Ri~r~l~~~~~l~eek~i~~~ami~~k~~r~~Ly~L~~~g~v~~ 417 (512)
...-.+|+.+| .|.+ .-.+|++...++...++..|..|.+.|+|.-
T Consensus 30 ~~~r~~Il~~L--~~~~-~~~eLa~~l~is~~tv~~~L~~L~~~Glv~~ 75 (96)
T 1y0u_A 30 NPVRRKILRML--DKGR-SEEEIMQTLSLSKKQLDYHLKVLEAGFCIER 75 (96)
T ss_dssp CHHHHHHHHHH--HTTC-CHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred CHHHHHHHHHH--cCCC-CHHHHHHHHCcCHHHHHHHHHHHHHCCCEEE
Confidence 34456788888 5677 9999999999999999999999999999954
No 209
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=70.44 E-value=12 Score=30.00 Aligned_cols=48 Identities=21% Similarity=0.232 Sum_probs=41.7
Q ss_pred CchHHHHHHHHHhcCCCcchhhhhhhcCCCcccHHHHHHHHhhcccceEE
Q 010353 369 GRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLME 418 (512)
Q Consensus 369 G~~~~Ri~r~l~~~~~l~eek~i~~~ami~~k~~r~~Ly~L~~~g~v~~Q 418 (512)
...-.+|+.+|. .|.+ .-.+|++...++...+...|..|.+.|+|...
T Consensus 24 ~~~r~~IL~~L~-~~~~-s~~eLa~~lgis~stvs~~L~~L~~~GlV~~~ 71 (108)
T 2kko_A 24 NGRRLQILDLLA-QGER-AVEAIATATGMNLTTASANLQALKSGGLVEAR 71 (108)
T ss_dssp TSTTHHHHHHHT-TCCE-EHHHHHHHHTCCHHHHHHHHHHHHHHTSEEEE
T ss_pred CHHHHHHHHHHH-cCCc-CHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEE
Confidence 444578998886 4777 99999999999999999999999999999665
No 210
>3k69_A Putative transcription regulator; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.95A {Lactobacillus plantarum} SCOP: a.4.5.0
Probab=70.43 E-value=5.8 Score=34.82 Aligned_cols=50 Identities=18% Similarity=0.153 Sum_probs=42.7
Q ss_pred CchHHHHHHHHHhc-CCCcchhhhhhhcCCCcccHHHHHHHHhhcccceEE
Q 010353 369 GRDAYRIFRLLSKS-GRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLME 418 (512)
Q Consensus 369 G~~~~Ri~r~l~~~-~~l~eek~i~~~ami~~k~~r~~Ly~L~~~g~v~~Q 418 (512)
+.-|+|++-.|..+ +..+.-++|++...+|..-+++++.+|.+.|||.-.
T Consensus 11 ~~yAlr~l~~La~~~~~~~s~~~IA~~~~is~~~l~kil~~L~~aGlv~s~ 61 (162)
T 3k69_A 11 FSVAVHSILYLDAHRDSKVASRELAQSLHLNPVMIRNILSVLHKHGYLTGT 61 (162)
T ss_dssp HHHHHHHHHHHHTTTTSCBCHHHHHHHHTSCGGGTHHHHHHHHHTTSSEEE
T ss_pred HHHHHHHHHHHHhCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEee
Confidence 34688999888754 455599999999999999999999999999999544
No 211
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=70.29 E-value=6.2 Score=34.87 Aligned_cols=51 Identities=16% Similarity=0.350 Sum_probs=45.3
Q ss_pred hchhHHHHHHHHHhcCCCcHHHHHHhcCCCHHHHHHHHHHHHhccccceec
Q 010353 18 FGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFT 68 (512)
Q Consensus 18 FG~~v~~V~~~Ll~~G~ltl~~I~~~t~l~~~~Vr~aL~vLIQhn~V~~~~ 68 (512)
..+.=.+|...|...|+.|..+|++.+++++..|+.-|-.|...|+|.-+.
T Consensus 25 ld~~d~~IL~~L~~~~~~s~~eLA~~lglS~~tv~~rl~~L~~~G~I~~~~ 75 (171)
T 2e1c_A 25 LDEIDKKIIKILQNDGKAPLREISKITGLAESTIHERIRKLRESGVIKKFT 75 (171)
T ss_dssp CCHHHHHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHHTTSSCCCC
T ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEeee
Confidence 445566889999999999999999999999999999999999999997443
No 212
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=70.21 E-value=3.1 Score=35.66 Aligned_cols=43 Identities=26% Similarity=0.357 Sum_probs=39.8
Q ss_pred HHHHHHHHhcCCCcchhhhhhhcCCCcccHHHHHHHHhhcccce
Q 010353 373 YRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLL 416 (512)
Q Consensus 373 ~Ri~r~l~~~~~l~eek~i~~~ami~~k~~r~~Ly~L~~~g~v~ 416 (512)
.+|++.|..++.+ ...+|++...++...++..+.+|.+.|+|.
T Consensus 6 ~~il~~L~~~~~~-~~~ela~~lg~s~~tv~~~l~~L~~~G~i~ 48 (150)
T 2pn6_A 6 LRILKILQYNAKY-SLDEIAREIRIPKATLSYRIKKLEKDGVIK 48 (150)
T ss_dssp HHHHHHHTTCTTS-CHHHHHHHHTSCHHHHHHHHHHHHHTTSSC
T ss_pred HHHHHHHHHcCCC-CHHHHHHHHCcCHHHHHHHHHHHHHCCcEE
Confidence 5788888888788 999999999999999999999999999995
No 213
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=70.04 E-value=8.4 Score=32.43 Aligned_cols=47 Identities=4% Similarity=0.171 Sum_probs=35.7
Q ss_pred hhHHHHHHHHHhc--CCCcHHHHHHhcCCCHHHHHHHHHHHHhccccce
Q 010353 20 DLVAKVCECLLRK--GPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQA 66 (512)
Q Consensus 20 ~~v~~V~~~Ll~~--G~ltl~~I~~~t~l~~~~Vr~aL~vLIQhn~V~~ 66 (512)
+.--.|..+|..+ |++|..+|++.++++++.|-..+-.|.+.|+|.-
T Consensus 41 ~~q~~vL~~l~~~~~~~~t~~eLa~~l~~~~~~vs~~l~~L~~~Glv~r 89 (148)
T 3jw4_A 41 SQQGRMIGYIYENQESGIIQKDLAQFFGRRGASITSMLQGLEKKGYIER 89 (148)
T ss_dssp HHHHHHHHHHHHHTTTCCCHHHHHHC------CHHHHHHHHHHTTSBCC
T ss_pred HHHHHHHHHHHhCCCCCCCHHHHHHHHCCChhHHHHHHHHHHHCCCEEe
Confidence 4445677888887 8999999999999999999999999999999983
No 214
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}
Probab=69.92 E-value=34 Score=28.26 Aligned_cols=48 Identities=8% Similarity=-0.005 Sum_probs=42.2
Q ss_pred chhHHHHHHHHHhcCCCcHHHHHHhcCCCHHHHHHHHHHHHhcccccee
Q 010353 19 GDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAF 67 (512)
Q Consensus 19 G~~v~~V~~~Ll~~G~ltl~~I~~~t~l~~~~Vr~aL~vLIQhn~V~~~ 67 (512)
.+.--.|..+|..+|. |..+|++.++++++.|-..|-.|.+.|+|.-.
T Consensus 36 t~~~~~iL~~l~~~~~-~~~~la~~l~~~~~tvs~~l~~Le~~Glv~r~ 83 (144)
T 3f3x_A 36 SYLDFSILKATSEEPR-SMVYLANRYFVTQSAITAAVDKLEAKGLVRRI 83 (144)
T ss_dssp CHHHHHHHHHHHHSCE-EHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CHHHHHHHHHHHHCCC-CHHHHHHHHCCChhHHHHHHHHHHHCCCEEec
Confidence 3445678888888888 99999999999999999999999999999843
No 215
>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=69.92 E-value=13 Score=30.70 Aligned_cols=48 Identities=21% Similarity=0.214 Sum_probs=41.8
Q ss_pred chHHHHHHHHHhcCCCcchhhhhhhcCCCcccHHHHHHHHhhcccceEE
Q 010353 370 RDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLME 418 (512)
Q Consensus 370 ~~~~Ri~r~l~~~~~l~eek~i~~~ami~~k~~r~~Ly~L~~~g~v~~Q 418 (512)
..-.+|+.+|...|.+ .-.+|++...++...+...|..|.+.|+|...
T Consensus 42 ~~rl~IL~~L~~~~~~-s~~eLa~~l~is~stvs~~L~~L~~~Glv~~~ 89 (122)
T 1u2w_A 42 ENRAKITYALCQDEEL-CVCDIANILGVTIANASHHLRTLYKQGVVNFR 89 (122)
T ss_dssp HHHHHHHHHHHHSSCE-EHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEC
T ss_pred HHHHHHHHHHHHCCCc-CHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEE
Confidence 3345789988877777 99999999999999999999999999999553
No 216
>2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus}
Probab=68.83 E-value=6.7 Score=36.94 Aligned_cols=49 Identities=10% Similarity=0.110 Sum_probs=44.5
Q ss_pred hchhHHHHHHHHHhcCCCcHHHHHHhcCCCHHHHHHHHHHHHhccccce
Q 010353 18 FGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQA 66 (512)
Q Consensus 18 FG~~v~~V~~~Ll~~G~ltl~~I~~~t~l~~~~Vr~aL~vLIQhn~V~~ 66 (512)
..+..-.|..+|..+|++|+.+|++.++++++.|...|-.|.+.|+|..
T Consensus 150 L~~~~~~IL~~L~~~~~~s~~eLA~~lglsksTv~r~L~~Le~~GlV~r 198 (244)
T 2wte_A 150 YSREEMKLLNVLYETKGTGITELAKMLDKSEKTLINKIAELKKFGILTQ 198 (244)
T ss_dssp CCHHHHHHHHHHHHHTCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEE
Confidence 4466778888888999999999999999999999999999999999984
No 217
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=68.61 E-value=4 Score=34.29 Aligned_cols=53 Identities=17% Similarity=0.334 Sum_probs=43.2
Q ss_pred hCchHHHHHHHHHhcCCCcchhhhhhhcCCCcccHHHHHHHHhhcccceEEEEe
Q 010353 368 YGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLV 421 (512)
Q Consensus 368 ~G~~~~Ri~r~l~~~~~l~eek~i~~~ami~~k~~r~~Ly~L~~~g~v~~QEvp 421 (512)
+...-++|+..|..+|.+ ...+|++...++...+-.++.+|.+.|||.-+.-|
T Consensus 34 lt~~q~~vL~~l~~~~~~-t~~eLa~~l~~~~~tvs~~l~~L~~~Glv~r~~~~ 86 (140)
T 3hsr_A 34 LTYTGYIVLMAIENDEKL-NIKKLGERVFLDSGTLTPLLKKLEKKDYVVRTREE 86 (140)
T ss_dssp CCHHHHHHHHHSCTTCEE-EHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEC--
T ss_pred CCHHHHHHHHHHHHcCCc-CHHHHHHHHCCChhhHHHHHHHHHHCCCeEecCCC
Confidence 344556778888777777 99999999999999999999999999999665433
No 218
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=68.60 E-value=5.8 Score=37.09 Aligned_cols=44 Identities=16% Similarity=0.205 Sum_probs=40.8
Q ss_pred HHHHHHHHHhcCCCcHHHHHHhcCCCHHHHHHHHHHHHhccccc
Q 010353 22 VAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQ 65 (512)
Q Consensus 22 v~~V~~~Ll~~G~ltl~~I~~~t~l~~~~Vr~aL~vLIQhn~V~ 65 (512)
..++.-+++.+|+.|..+|+..+++|++.|...|--|..+|+|.
T Consensus 166 ~~~~l~~~l~~~~~t~~~la~~~~l~~~~V~~~l~~L~~~~~v~ 209 (232)
T 2qlz_A 166 QLAILHYLLLNGRATVEELSDRLNLKEREVREKISEMARFVPVK 209 (232)
T ss_dssp HHHHHHHHHHSSEEEHHHHHHHHTCCHHHHHHHHHHHTTTSCEE
T ss_pred HHHHHHHHHhcCCCCHHHHHHHhCcCHHHHHHHHHHHHhcCCeE
Confidence 66677777889999999999999999999999999999999996
No 219
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=68.45 E-value=4.8 Score=30.75 Aligned_cols=44 Identities=20% Similarity=0.248 Sum_probs=37.0
Q ss_pred HHHHHHHhc-----CCCcchhhhhhhcCCCcccHHHHHHHHhhcccceE
Q 010353 374 RIFRLLSKS-----GRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLM 417 (512)
Q Consensus 374 Ri~r~l~~~-----~~l~eek~i~~~ami~~k~~r~~Ly~L~~~g~v~~ 417 (512)
.|+.+|... |+..+-.+|++...++...+|.-|..|-+.|+|.-
T Consensus 8 ~IL~~I~~~i~~~~g~~psv~EIa~~lgvS~~TVrr~L~~Le~kG~I~R 56 (77)
T 2jt1_A 8 KIISIVQERQNMDDGAPVKTRDIADAAGLSIYQVRLYLEQLHDVGVLEK 56 (77)
T ss_dssp HHHHHHHHHHHHHTTSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHhhccCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCcEEe
Confidence 466666665 55559999999999999999999999999999944
No 220
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=67.92 E-value=6.3 Score=33.41 Aligned_cols=48 Identities=13% Similarity=0.261 Sum_probs=42.5
Q ss_pred chHHHHHHHHHhcCCCcchhhhhhhcCCCcccHHHHHHHHhhcccceEE
Q 010353 370 RDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLME 418 (512)
Q Consensus 370 ~~~~Ri~r~l~~~~~l~eek~i~~~ami~~k~~r~~Ly~L~~~g~v~~Q 418 (512)
..-.+|+..|...+.+ ...+|++...++...+...+.+|.+.|||.-.
T Consensus 47 ~~~~~iL~~l~~~~~~-t~~ela~~l~~s~~tvs~~l~~Le~~glv~r~ 94 (153)
T 2pex_A 47 YPQYLVMLVLWETDER-SVSEIGERLYLDSATLTPLLKRLQAAGLVTRT 94 (153)
T ss_dssp HHHHHHHHHHHHSCSE-EHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHhCCCc-CHHHHHHHhCCCcccHHHHHHHHHHCCCEeec
Confidence 3456788888888777 99999999999999999999999999999654
No 221
>2z99_A Putative uncharacterized protein; winged helix domain, cell cycle, cell division, chromosome partition, cytoplasm; 2.30A {Mycobacterium tuberculosis}
Probab=67.18 E-value=48 Score=30.50 Aligned_cols=122 Identities=12% Similarity=0.089 Sum_probs=77.3
Q ss_pred hHHHHHHHHHhcC-CCcHHHHHHhcCCCHHHHHHHHHHHHhc------cccceecccCCCCCCCCCCCccEEEechhhHH
Q 010353 21 LVAKVCECLLRKG-PLTRQNVKRYTELSDEQVKNALLVLIQQ------NCVQAFTTEQPDGFADGPKANTQYVVLFDNIL 93 (512)
Q Consensus 21 ~v~~V~~~Ll~~G-~ltl~~I~~~t~l~~~~Vr~aL~vLIQh------n~V~~~~~~~~~~~~~~~~~~~~Y~~~~~~il 93 (512)
+.+.|=.+|+..| ++|+.+|.+.++++...|+.+|--|.+. |+-. .... + -|.+-...-+
T Consensus 16 l~~~iEAlLf~a~epvs~~~La~~l~~~~~~v~~~l~~L~~~y~~~~rGiel-~~v~--~----------gy~l~T~~e~ 82 (219)
T 2z99_A 16 LKRVLEALLLVIDTPVTADALAAATEQPVYRVAAKLQLMADELTGRDSGIDL-RHTS--E----------GWRMYTRARF 82 (219)
T ss_dssp HHHHHHHHHHHCSSCBCHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCSEEE-EEET--T----------EEEEEECGGG
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHCcCHHHHHHHHHHHHHHHhhCCCCEEE-EEEC--C----------EEEEEEcHHH
Confidence 4466667777665 7999999999999999999999999763 1111 0101 0 1333222111
Q ss_pred HHhchhhHHHH-HHHHhhhhHHHHHHHHHHcccCCHHHHHHHHhhcccCCCccCHHHHHHHHHHHHhcccccccC
Q 010353 94 HRVRFAKFLTI-LSQEFDQQCVELVQGLLEHGRLTLKQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCP 167 (512)
Q Consensus 94 ~rlR~pr~l~~-i~~~~G~~a~~Iv~~lL~~G~l~~~~li~~~~~~~~~~~~~~~~~l~~~f~~Lv~~~fi~rv~ 167 (512)
.-. ..++... -...+...+-.++..+..+|-+|-.+|-+.-.. + ....+..|+..|||..+.
T Consensus 83 ~~~-v~~~~~~~~~~~Ls~aaLEtLaiIAy~QPITR~eI~~irGv--------~---~~~~v~~Lle~gLI~e~G 145 (219)
T 2z99_A 83 APY-VEKLLLDGARTKLTRAALETLAVVAYRQPVTRARVSAVRGV--------N---VDAVMRTLLARGLITEVG 145 (219)
T ss_dssp HHH-HHHHHHHHHSCCCCHHHHHHHHHHHHHCSEEHHHHHHHHTS--------C---CHHHHHHHHHTTSEEEEE
T ss_pred HHH-HHHHhcccccCccCHHHHHHHHHHHHcCCcCHHHHHHHHCC--------C---HHHHHHHHHHCCCEEEcc
Confidence 000 0111111 113455666779999999999999888655321 1 157899999999998875
No 222
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=67.10 E-value=7.5 Score=32.77 Aligned_cols=51 Identities=12% Similarity=0.118 Sum_probs=37.2
Q ss_pred hCchHHHHHHHHHhc--CCCcchhhhhhhcCCCcccHHHHHHHHhhcccceEEE
Q 010353 368 YGRDAYRIFRLLSKS--GRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEK 419 (512)
Q Consensus 368 ~G~~~~Ri~r~l~~~--~~l~eek~i~~~ami~~k~~r~~Ly~L~~~g~v~~QE 419 (512)
+...-.+|+..|... +.+ ...+|++...++...+-.++.+|.+.|||.-+.
T Consensus 39 lt~~q~~vL~~l~~~~~~~~-t~~eLa~~l~~~~~~vs~~l~~L~~~Glv~r~~ 91 (148)
T 3jw4_A 39 LNSQQGRMIGYIYENQESGI-IQKDLAQFFGRRGASITSMLQGLEKKGYIERRI 91 (148)
T ss_dssp CCHHHHHHHHHHHHHTTTCC-CHHHHHHC------CHHHHHHHHHHTTSBCCC-
T ss_pred CCHHHHHHHHHHHhCCCCCC-CHHHHHHHHCCChhHHHHHHHHHHHCCCEEeeC
Confidence 344457888888877 677 999999999999999999999999999996543
No 223
>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}
Probab=66.80 E-value=15 Score=31.59 Aligned_cols=48 Identities=6% Similarity=-0.096 Sum_probs=38.4
Q ss_pred hhHHHHHHHHHhcC--CCcHHHHHHhcCCCHHHHHHHHHHHHhcccccee
Q 010353 20 DLVAKVCECLLRKG--PLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAF 67 (512)
Q Consensus 20 ~~v~~V~~~Ll~~G--~ltl~~I~~~t~l~~~~Vr~aL~vLIQhn~V~~~ 67 (512)
+.--.|..+|..+| ++|..+|++.+++++..|-..|-.|.+.|+|.-.
T Consensus 46 ~~q~~vL~~l~~~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~ 95 (168)
T 3u2r_A 46 AQQYNTLRLLRSVHPEGMATLQIADRLISRAPDITRLIDRLDDRGLVLRT 95 (168)
T ss_dssp HHHHHHHHHHHHHTTSCEEHHHHHHHC---CTHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHhcCCCCcCHHHHHHHHCCChhhHHHHHHHHHHCCCEeec
Confidence 44456777788864 9999999999999999999999999999999843
No 224
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=66.71 E-value=14 Score=28.85 Aligned_cols=48 Identities=15% Similarity=0.232 Sum_probs=41.0
Q ss_pred CchHHHHHHHHHhcCCCcchhhhhhhcCCCcccHHHHHHHHhhcccceEE
Q 010353 369 GRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLME 418 (512)
Q Consensus 369 G~~~~Ri~r~l~~~~~l~eek~i~~~ami~~k~~r~~Ly~L~~~g~v~~Q 418 (512)
+..-.+|+.+|.. |.+ .-.+|++...++...+...|..|.+.|+|.-.
T Consensus 22 ~~~r~~Il~~L~~-~~~-~~~ela~~l~is~~tvs~~L~~L~~~Glv~~~ 69 (98)
T 3jth_A 22 NERRLQILCMLHN-QEL-SVGELCAKLQLSQSALSQHLAWLRRDGLVTTR 69 (98)
T ss_dssp SHHHHHHHHHTTT-SCE-EHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CHHHHHHHHHHhc-CCC-CHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEE
Confidence 3444678888866 777 99999999999999999999999999999543
No 225
>2xrn_A HTH-type transcriptional regulator TTGV; DNA-binding protein, tetramer gene regulator, cooperative DN binding, multidrug binding protein; 2.90A {Pseudomonas putida} PDB: 2xro_A
Probab=66.66 E-value=27 Score=32.43 Aligned_cols=42 Identities=14% Similarity=0.161 Sum_probs=37.1
Q ss_pred HHHHHHHhcC-CCcHHHHHHhcCCCHHHHHHHHHHHHhccccc
Q 010353 24 KVCECLLRKG-PLTRQNVKRYTELSDEQVKNALLVLIQQNCVQ 65 (512)
Q Consensus 24 ~V~~~Ll~~G-~ltl~~I~~~t~l~~~~Vr~aL~vLIQhn~V~ 65 (512)
.|..+|...+ ++|+.+|++.++++.+.|..-|-.|.++|+|.
T Consensus 10 ~iL~~l~~~~~~~s~~ela~~~gl~~stv~r~l~~L~~~G~v~ 52 (241)
T 2xrn_A 10 SIMRALGSHPHGLSLAAIAQLVGLPRSTVQRIINALEEEFLVE 52 (241)
T ss_dssp HHHHHHHTCTTCEEHHHHHHHTTSCHHHHHHHHHHHHTTTSEE
T ss_pred HHHHHHHhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEE
Confidence 4556666665 79999999999999999999999999999997
No 226
>1ylf_A RRF2 family protein; structural genomics, transcription regulator, P protein structure initiative; 2.50A {Bacillus cereus atcc 14579} SCOP: a.4.5.55
Probab=65.71 E-value=4 Score=35.20 Aligned_cols=49 Identities=18% Similarity=0.242 Sum_probs=41.6
Q ss_pred CchHHHHHHHHHhc-CCCcchhhhhhhcCCCcccHHHHHHHHhhcccceE
Q 010353 369 GRDAYRIFRLLSKS-GRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLM 417 (512)
Q Consensus 369 G~~~~Ri~r~l~~~-~~l~eek~i~~~ami~~k~~r~~Ly~L~~~g~v~~ 417 (512)
+.-|+|++-.|..+ +..+.-++|++..-+|.+-+++++.+|.+.|+|..
T Consensus 13 ~~yAl~~L~~La~~~~~~~~~~~iA~~~~i~~~~l~kil~~L~~~Glv~s 62 (149)
T 1ylf_A 13 FSIAVHILSILKNNPSSLCTSDYMAESVNTNPVVIRKIMSYLKQAGFVYV 62 (149)
T ss_dssp HHHHHHHHHHHHHSCGGGCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHHhCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEE
Confidence 34588999888763 34459999999999999999999999999999954
No 227
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=65.23 E-value=6.5 Score=30.85 Aligned_cols=79 Identities=8% Similarity=-0.085 Sum_probs=55.0
Q ss_pred chHHHHHHHHHhcCCCcchhhh----hhhcCCCcccHHHHHHHHhhcccceEEEEecCCCCCceEEEEEEehHHHHHHHH
Q 010353 370 RDAYRIFRLLSKSGRLLETDKI----SDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTGARQSQFLLWKVNRQILWKHVL 445 (512)
Q Consensus 370 ~~~~Ri~r~l~~~~~l~eek~i----~~~ami~~k~~r~~Ly~L~~~g~v~~QEvpk~~~~~~t~~lw~v~~~~~~~~~l 445 (512)
..-.+|+..|...+.+ ...+| ++...++...+-..+.+|.+.|||.-..-| |.. .+++. .--..++
T Consensus 8 ~~q~~iL~~l~~~~~~-~~~el~~~la~~l~is~~tvs~~l~~Le~~gli~r~~~~------r~~-~~~LT--~~G~~~~ 77 (99)
T 1tbx_A 8 YPEAIVLAYLYDNEGI-ATYDLYKKVNAEFPMSTATFYDAKKFLIQEGFVKERQER------GEK-RLYLT--EKGKLFA 77 (99)
T ss_dssp CHHHHHHHHHTTCTTC-BHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTSEEEEEET------TEE-EEEEC--HHHHHHH
T ss_pred HHHHHHHHHHHHcCCc-CHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCEEEEecC------Cce-EEEEC--HHHHHHH
Confidence 3456788888877777 99999 899999999999999999999999655443 222 33333 3334455
Q ss_pred HHHHHHHHHHHHH
Q 010353 446 DEMFHAALNLSLR 458 (512)
Q Consensus 446 ~~~~k~~~nl~~R 458 (512)
..+...+......
T Consensus 78 ~~~~~~~~~~~~~ 90 (99)
T 1tbx_A 78 ISLKTAIETYKQI 90 (99)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5555555444433
No 228
>3lwf_A LIN1550 protein, putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG; HET: SO4; 2.06A {Listeria innocua}
Probab=64.95 E-value=12 Score=32.74 Aligned_cols=44 Identities=16% Similarity=0.248 Sum_probs=36.2
Q ss_pred HHHHHHHHHh---cCCCcHHHHHHhcCCCHHHHHHHHHHHHhccccc
Q 010353 22 VAKVCECLLR---KGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQ 65 (512)
Q Consensus 22 v~~V~~~Ll~---~G~ltl~~I~~~t~l~~~~Vr~aL~vLIQhn~V~ 65 (512)
+=++.-+|.. .++.|..+|+...++|++-+++.|..|.+.|+|.
T Consensus 29 Alr~L~~LA~~~~~~~~s~~eIA~~~~i~~~~l~kil~~L~~aGlv~ 75 (159)
T 3lwf_A 29 GLTITLELAKRIGDGPISLRSIAQDKNLSEHYLEQLIGPLRNAGIVK 75 (159)
T ss_dssp HHHHHHHHHHTTTSCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHhcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCeEE
Confidence 3344444443 2478999999999999999999999999999998
No 229
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48
Probab=64.94 E-value=6.7 Score=30.63 Aligned_cols=43 Identities=16% Similarity=0.154 Sum_probs=37.4
Q ss_pred HHHHHHHHhcC-CCcchhhhhhhcCCCccc-HHHHHHHHhhcccce
Q 010353 373 YRIFRLLSKSG-RLLETDKISDTTFVEKKD-APKILYKLWKDGYLL 416 (512)
Q Consensus 373 ~Ri~r~l~~~~-~l~eek~i~~~ami~~k~-~r~~Ly~L~~~g~v~ 416 (512)
+.++.++..+| .+ ...+|++...++... +-..+.+|.+.|||.
T Consensus 18 l~~L~~l~~~~~~~-t~~eLa~~l~is~~t~vs~~l~~Le~~Glv~ 62 (95)
T 2pg4_A 18 LPTLLEFEKKGYEP-SLAEIVKASGVSEKTFFMGLKDRLIRAGLVK 62 (95)
T ss_dssp HHHHHHHHHTTCCC-CHHHHHHHHCCCHHHHHTTHHHHHHHTTSEE
T ss_pred HHHHHHHHhcCCCC-CHHHHHHHHCCCchHHHHHHHHHHHHCCCee
Confidence 34556666776 57 999999999999999 999999999999997
No 230
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=64.81 E-value=4.3 Score=34.10 Aligned_cols=45 Identities=27% Similarity=0.333 Sum_probs=38.8
Q ss_pred HHHHHHHHhcCCCcchhhhhhhcCCCcccHHHHHHHHhhcccceEEE
Q 010353 373 YRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEK 419 (512)
Q Consensus 373 ~Ri~r~l~~~~~l~eek~i~~~ami~~k~~r~~Ly~L~~~g~v~~QE 419 (512)
.+|+..|...+ + ...+|++...++...+...+.+|.+.|||.-+.
T Consensus 41 ~~iL~~l~~~~-~-t~~eLa~~l~~s~~tvs~~l~~L~~~Glv~r~~ 85 (146)
T 3tgn_A 41 EHILMLLSEES-L-TNSELARRLNVSQAAVTKAIKSLVKEGMLETSK 85 (146)
T ss_dssp HHHHHHHTTCC-C-CHHHHHHHHTCCHHHHHHHHHHHHHTTSEEC--
T ss_pred HHHHHHHHhCC-C-CHHHHHHHHCCCHHHHHHHHHHHHHCCCeEecc
Confidence 56778887776 6 999999999999999999999999999996543
No 231
>3mq0_A Transcriptional repressor of the blcabc operon; helix-turn-helix, GAF fold, transcription repressor; 1.79A {Agrobacterium tumefaciens}
Probab=64.73 E-value=5.9 Score=37.96 Aligned_cols=46 Identities=24% Similarity=0.201 Sum_probs=38.4
Q ss_pred hHHHHHHHHHhcCCCcchhhhhhhcCCCcccHHHHHHHHhhcccce
Q 010353 371 DAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLL 416 (512)
Q Consensus 371 ~~~Ri~r~l~~~~~l~eek~i~~~ami~~k~~r~~Ly~L~~~g~v~ 416 (512)
.+++|+++|...+.-+.-.+|++...+|...+..+|..|...|||.
T Consensus 31 Ral~IL~~l~~~~~~ltl~eia~~lgl~ksTv~RlL~tL~~~G~v~ 76 (275)
T 3mq0_A 31 RAVRILDLVAGSPRDLTAAELTRFLDLPKSSAHGLLAVMTELDLLA 76 (275)
T ss_dssp HHHHHHHHHHHCSSCEEHHHHHHHHTCC--CHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHhhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEE
Confidence 4677999998765433999999999999999999999999999994
No 232
>2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus}
Probab=64.64 E-value=5.3 Score=37.65 Aligned_cols=50 Identities=16% Similarity=0.214 Sum_probs=43.7
Q ss_pred hCchHHHHHHHHHhcCCCcchhhhhhhcCCCcccHHHHHHHHhhcccceEE
Q 010353 368 YGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLME 418 (512)
Q Consensus 368 ~G~~~~Ri~r~l~~~~~l~eek~i~~~ami~~k~~r~~Ly~L~~~g~v~~Q 418 (512)
+.....+|+..|..++.+ ...+|++...++...+...|.+|.+.|||.-.
T Consensus 150 L~~~~~~IL~~L~~~~~~-s~~eLA~~lglsksTv~r~L~~Le~~GlV~r~ 199 (244)
T 2wte_A 150 YSREEMKLLNVLYETKGT-GITELAKMLDKSEKTLINKIAELKKFGILTQK 199 (244)
T ss_dssp CCHHHHHHHHHHHHHTCB-CHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCHHHHHHHHHHHHcCCC-CHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEe
Confidence 345567788888888887 99999999999999999999999999999654
No 233
>2jsc_A Transcriptional regulator RV1994C/MT2050; cadmium, transcriptional repressor, solution structure, STRU genomics; NMR {Mycobacterium tuberculosis}
Probab=64.58 E-value=21 Score=29.04 Aligned_cols=60 Identities=12% Similarity=0.103 Sum_probs=46.7
Q ss_pred chHHHHHHHHHhcCCCcchhhhhhhcCCCcccHHHHHHHHhhcccceEEEEecCCCCCceEEEEEEehH
Q 010353 370 RDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTGARQSQFLLWKVNRQ 438 (512)
Q Consensus 370 ~~~~Ri~r~l~~~~~l~eek~i~~~ami~~k~~r~~Ly~L~~~g~v~~QEvpk~~~~~~t~~lw~v~~~ 438 (512)
..-.+|+++|. .|.. .-.+|++...++...+...|..|.+.|+|.... . ++ ...|+++.+
T Consensus 21 ~~r~~IL~~L~-~~~~-~~~eLa~~lgis~stvs~~L~~L~~~GlV~~~~---~---gr-~~~y~l~~~ 80 (118)
T 2jsc_A 21 PTRCRILVALL-DGVC-YPGQLAAHLGLTRSNVSNHLSCLRGCGLVVATY---E---GR-QVRYALADS 80 (118)
T ss_dssp HHHHHHHHHHH-TTCC-STTTHHHHHSSCHHHHHHHHHHHTTTTSEEEEE---C---SS-SEEEEESSH
T ss_pred HHHHHHHHHHH-cCCC-CHHHHHHHHCcCHHHHHHHHHHHHHCCceEEEE---E---CC-EEEEEEChH
Confidence 34567888886 5677 889999999999999999999999999996542 1 22 245777765
No 234
>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP}
Probab=63.99 E-value=25 Score=28.50 Aligned_cols=63 Identities=11% Similarity=0.066 Sum_probs=48.9
Q ss_pred hCchHHHHHHHHHhcCCCcchhhhhhhcCCCcccHHHHHHHHhhcccceEEEEecCCCCCceEEEEEEehHH
Q 010353 368 YGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTGARQSQFLLWKVNRQI 439 (512)
Q Consensus 368 ~G~~~~Ri~r~l~~~~~l~eek~i~~~ami~~k~~r~~Ly~L~~~g~v~~QEvpk~~~~~~t~~lw~v~~~~ 439 (512)
-.+.-.+|+.+|. .|.+ .-.+|++...++...+...|..|.+.|+|..... ++ ..+|+++.+.
T Consensus 16 ~~~~R~~Il~~L~-~~~~-~~~eLa~~l~is~~tvs~hL~~L~~~GlV~~~~~------gr-~~~y~l~~~~ 78 (118)
T 3f6o_A 16 ADPTRRAVLGRLS-RGPA-TVSELAKPFDMALPSFMKHIHFLEDSGWIRTHKQ------GR-VRTCAIEKEP 78 (118)
T ss_dssp TSHHHHHHHHHHH-TCCE-EHHHHHTTCCSCHHHHHHHHHHHHHTTSEEEEEE------TT-EEEEEECSHH
T ss_pred CCHHHHHHHHHHH-hCCC-CHHHHHHHhCcCHHHHHHHHHHHHHCCCeEEEec------CC-EEEEEECHHH
Confidence 3455578888887 5777 9999999999999999999999999999965432 22 2346777653
No 235
>1mkm_A ICLR transcriptional regulator; structural genomics, winged helix-turn-helix, PSI, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.33 d.110.2.2
Probab=63.92 E-value=8.9 Score=35.96 Aligned_cols=43 Identities=9% Similarity=0.200 Sum_probs=37.6
Q ss_pred HHHHHHHhcC-CCcHHHHHHhcCCCHHHHHHHHHHHHhccccce
Q 010353 24 KVCECLLRKG-PLTRQNVKRYTELSDEQVKNALLVLIQQNCVQA 66 (512)
Q Consensus 24 ~V~~~Ll~~G-~ltl~~I~~~t~l~~~~Vr~aL~vLIQhn~V~~ 66 (512)
.|..+|...+ ++|+.+|++.++++.+.|..-|-.|.++|+|..
T Consensus 12 ~iL~~l~~~~~~~~~~ela~~~gl~~stv~r~l~~L~~~G~v~~ 55 (249)
T 1mkm_A 12 EILDFIVKNPGDVSVSEIAEKFNMSVSNAYKYMVVLEEKGFVLR 55 (249)
T ss_dssp HHHHHHHHCSSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEE
Confidence 4556666665 799999999999999999999999999999973
No 236
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=63.56 E-value=4.6 Score=34.03 Aligned_cols=53 Identities=25% Similarity=0.326 Sum_probs=43.1
Q ss_pred CchHHHHHHHHHhcCCCcchhhhhhhcCCCcccHHHHHHHHhhcccceEEEEec
Q 010353 369 GRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVV 422 (512)
Q Consensus 369 G~~~~Ri~r~l~~~~~l~eek~i~~~ami~~k~~r~~Ly~L~~~g~v~~QEvpk 422 (512)
...-.+|+..|...|.+ ...+|++...++...+-..+.+|.+.|||.-+.-|.
T Consensus 39 ~~~~~~iL~~l~~~~~~-t~~ela~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~ 91 (148)
T 3nrv_A 39 GMTEWRIISVLSSASDC-SVQKISDILGLDKAAVSRTVKKLEEKKYIEVNGHSE 91 (148)
T ss_dssp CHHHHHHHHHHHHSSSB-CHHHHHHHHTCCHHHHHHHHHHHHHTTSEEC-----
T ss_pred CHHHHHHHHHHHcCCCC-CHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeecCCC
Confidence 34557888999888878 999999999999999999999999999996654443
No 237
>3tdu_C Cullin-1, CUL-1; E2:E3, ligase-protein binding complex; 1.50A {Homo sapiens} PDB: 3tdz_C
Probab=63.06 E-value=13 Score=28.39 Aligned_cols=57 Identities=12% Similarity=0.134 Sum_probs=43.5
Q ss_pred hhHHHHHHHHHHcccCCHHHHHHHHhhcccCCCccCHHHHHHHHHHHHhcccccccC
Q 010353 111 QQCVELVQGLLEHGRLTLKQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCP 167 (512)
Q Consensus 111 ~~a~~Iv~~lL~~G~l~~~~li~~~~~~~~~~~~~~~~~l~~~f~~Lv~~~fi~rv~ 167 (512)
..-+.||...=....++-.+|+..+.+....--..+...++..+..|++.+||.|.+
T Consensus 11 ~i~AaIVRIMK~rK~l~h~~Lv~ev~~ql~~rF~p~~~~IKk~IE~LIereYl~R~~ 67 (77)
T 3tdu_C 11 LIQAAIVRIMKMRKVLKHQQLLGEVLTQLSSRFKPRVPVIKKCIDILIEKEYLERVD 67 (77)
T ss_dssp HHHHHHHHHHHHHSEEEHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHTTSEEEET
T ss_pred eEeeEEeeeecccceeeHHHHHHHHHHHHhCcCCCCHHHHHHHHHHHHhhhHhhcCC
Confidence 445677777778888888888887765432212347889999999999999999985
No 238
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=62.94 E-value=57 Score=27.54 Aligned_cols=63 Identities=6% Similarity=0.012 Sum_probs=47.0
Q ss_pred hHHHHHHHHHhcCCCcchhhhhhhcCCCcccHHHHHHHHhhcccceEEEEecCCCCCceEEEEEEe
Q 010353 371 DAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTGARQSQFLLWKVN 436 (512)
Q Consensus 371 ~~~Ri~r~l~~~~~l~eek~i~~~ami~~k~~r~~Ly~L~~~g~v~~QEvpk~~~~~~t~~lw~v~ 436 (512)
.-++|+..|...+....+.+|++...++...+-.++.+|.+.|||.-..-| ...|..++.--+
T Consensus 32 ~q~~vL~~L~~~~~~~~~~eLa~~l~~~~~tvs~~v~~Le~~GlV~R~~~~---~DrR~~~l~LT~ 94 (151)
T 4aik_A 32 THWVTLYNINRLPPEQSQIQLAKAIGIEQPSLVRTLDQLEEKGLITRHTSA---NDRRAKRIKLTE 94 (151)
T ss_dssp HHHHHHHHHHHSCTTSCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEECS---SCTTCEEEEECG
T ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHCcCHHHHHHHHHHHHhCCCeEeecCC---CCCcchhhhcCH
Confidence 345777777765554488999999999999999999999999999544333 345666554433
No 239
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=62.73 E-value=17 Score=30.94 Aligned_cols=55 Identities=9% Similarity=0.098 Sum_probs=44.1
Q ss_pred hhHHHHHHHHHH-cccCCHHHHHHHHhhcccCCCccCHHHHHHHHHHHHhcccccccCC
Q 010353 111 QQCVELVQGLLE-HGRLTLKQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPA 168 (512)
Q Consensus 111 ~~a~~Iv~~lL~-~G~l~~~~li~~~~~~~~~~~~~~~~~l~~~f~~Lv~~~fi~rv~~ 168 (512)
..=..|++.|.. .+++++.+|.+.+....+ ..+...|-.++..|++.|+|.++..
T Consensus 22 ~qR~~Il~~L~~~~~~~sa~ei~~~l~~~~~---~is~aTVYR~L~~L~e~Glv~~~~~ 77 (145)
T 2fe3_A 22 PQRHAILEYLVNSMAHPTADDIYKALEGKFP---NMSVATVYNNLRVFRESGLVKELTY 77 (145)
T ss_dssp HHHHHHHHHHHHCSSCCCHHHHHHHHGGGCT---TCCHHHHHHHHHHHHHTTSEEEECC
T ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHhCC---CCChhhHHHHHHHHHHCCCEEEEee
Confidence 555677888776 478999999999865432 3578899999999999999999853
No 240
>2z99_A Putative uncharacterized protein; winged helix domain, cell cycle, cell division, chromosome partition, cytoplasm; 2.30A {Mycobacterium tuberculosis}
Probab=62.67 E-value=88 Score=28.70 Aligned_cols=80 Identities=10% Similarity=0.130 Sum_probs=58.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHhcCCCcchhhhhhhcCCCcccHHHHHHHHhhcccceEEEEecCCCC
Q 010353 347 DFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTGAR 426 (512)
Q Consensus 347 ~~~~~~~~lr~~~le~~v~~~~G~~~~Ri~r~l~~~~~l~eek~i~~~ami~~k~~r~~Ly~L~~~g~v~~QEvpk~~~~ 426 (512)
+|...++.+.. .--..++...+..++.++.-++-. +--+|++.-.++. -.++.+|.+.|+|. |+.+...+
T Consensus 81 e~~~~v~~~~~----~~~~~~Ls~aaLEtLaiIAy~QPI-TR~eI~~irGv~~---~~~v~~Lle~gLI~--e~Gr~~~~ 150 (219)
T 2z99_A 81 RFAPYVEKLLL----DGARTKLTRAALETLAVVAYRQPV-TRARVSAVRGVNV---DAVMRTLLARGLIT--EVGTDADT 150 (219)
T ss_dssp GGHHHHHHHHH----HHHSCCCCHHHHHHHHHHHHHCSE-EHHHHHHHHTSCC---HHHHHHHHHTTSEE--EEEECTTT
T ss_pred HHHHHHHHHhc----ccccCccCHHHHHHHHHHHHcCCc-CHHHHHHHHCCCH---HHHHHHHHHCCCEE--EccccCCC
Confidence 66665554322 122346888889999999998666 9999999999986 57999999999994 34443344
Q ss_pred CceEEEEEEehH
Q 010353 427 QSQFLLWKVNRQ 438 (512)
Q Consensus 427 ~~t~~lw~v~~~ 438 (512)
+ -++|.++..
T Consensus 151 G--p~ly~tT~~ 160 (219)
T 2z99_A 151 G--AVTFATTEL 160 (219)
T ss_dssp C--CEEEEECHH
T ss_pred C--CeEEEECHH
Confidence 4 567777755
No 241
>2xrn_A HTH-type transcriptional regulator TTGV; DNA-binding protein, tetramer gene regulator, cooperative DN binding, multidrug binding protein; 2.90A {Pseudomonas putida} PDB: 2xro_A
Probab=62.62 E-value=5.5 Score=37.25 Aligned_cols=88 Identities=14% Similarity=0.119 Sum_probs=60.4
Q ss_pred hHHHHHHHHHhcC-CCcchhhhhhhcCCCcccHHHHHHHHhhcccceEEEEecCCCCCceEEEEEEehH--HHHHHHHHH
Q 010353 371 DAYRIFRLLSKSG-RLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTGARQSQFLLWKVNRQ--ILWKHVLDE 447 (512)
Q Consensus 371 ~~~Ri~r~l~~~~-~l~eek~i~~~ami~~k~~r~~Ly~L~~~g~v~~QEvpk~~~~~~t~~lw~v~~~--~~~~~~l~~ 447 (512)
.+++|+++|...+ .+ .-.+|++...+|...+..+|..|.+.|||.-. +.+ +. |++.+. .+-..--.+
T Consensus 7 r~l~iL~~l~~~~~~~-s~~ela~~~gl~~stv~r~l~~L~~~G~v~~~--~~~----~~---Y~lg~~~~~lg~~~~~~ 76 (241)
T 2xrn_A 7 RAASIMRALGSHPHGL-SLAAIAQLVGLPRSTVQRIINALEEEFLVEAL--GPA----GG---FRLGPALGQLINQAQTD 76 (241)
T ss_dssp HHHHHHHHHHTCTTCE-EHHHHHHHTTSCHHHHHHHHHHHHTTTSEEEC--GGG----CE---EEECSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCC-CHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEe--CCC----Ce---EEECHHHHHHHhhcccC
Confidence 4788899887765 46 99999999999999999999999999999431 221 22 233322 121113345
Q ss_pred HHHHHHHHHHHHHHHHHhhhh
Q 010353 448 MFHAALNLSLRVSYELDREKE 468 (512)
Q Consensus 448 ~~k~~~nl~~R~~~e~~~~k~ 468 (512)
+...+.-.+.++..+....-.
T Consensus 77 l~~~a~p~l~~L~~~tgetv~ 97 (241)
T 2xrn_A 77 ILSLVKPYLRSLAEELDESVS 97 (241)
T ss_dssp HHHHHHHHHHHHHHHHTSEEE
T ss_pred HHHHHHHHHHHHHHHHCCeEE
Confidence 666777777777776655543
No 242
>1r7j_A Conserved hypothetical protein SSO10A; winged helix-turn-helix, two-stranded antiparallel coiled CO structural genomics, PSI; 1.47A {Sulfolobus solfataricus} SCOP: a.4.5.49 PDB: 1xsx_A
Probab=62.51 E-value=54 Score=25.64 Aligned_cols=71 Identities=13% Similarity=0.144 Sum_probs=51.5
Q ss_pred hhHHHHHHHHHhcCCCcHHHHHHhcCCCHHHHHHHHHHHHhccccceecccCCCCCCCCCCCccEEEechhhHHHHhchh
Q 010353 20 DLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQPDGFADGPKANTQYVVLFDNILHRVRFA 99 (512)
Q Consensus 20 ~~v~~V~~~Ll~~G~ltl~~I~~~t~l~~~~Vr~aL~vLIQhn~V~~~~~~~~~~~~~~~~~~~~Y~~~~~~il~rlR~p 99 (512)
+++..|-.++. .| .+..+|+..++++++.++.-+-.|...|+|. .... -|.+-..+--.+-.+-
T Consensus 8 eIi~~IL~~i~-~~-~~~t~La~~~~ls~~~~~~~l~~L~~~GLI~-~~~~-------------~~~LT~kG~~~l~~l~ 71 (95)
T 1r7j_A 8 EIIQAILEACK-SG-SPKTRIMYGANLSYALTGRYIKMLMDLEIIR-QEGK-------------QYMLTKKGEELLEDIR 71 (95)
T ss_dssp HHHHHHHHHHT-TC-BCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE-EETT-------------EEEECHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-cC-CCHHHHHHHhCcCHHHHHHHHHHHHHCCCeE-EECC-------------eeEEChhHHHHHHHHH
Confidence 34555655554 57 8999999999999999999999999999997 3311 3777777655444444
Q ss_pred hHHHHHH
Q 010353 100 KFLTILS 106 (512)
Q Consensus 100 r~l~~i~ 106 (512)
.+.....
T Consensus 72 ~~~~~l~ 78 (95)
T 1r7j_A 72 KFNEMRK 78 (95)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555444
No 243
>3cuq_B Vacuolar protein-sorting-associated protein 36; ESCRT, MBV, VPS, nucleus, protein transport, transc transcription regulation, transport, endosome; 2.61A {Homo sapiens} PDB: 2zme_B
Probab=62.45 E-value=21 Score=32.86 Aligned_cols=48 Identities=23% Similarity=0.270 Sum_probs=42.6
Q ss_pred chhHHHHHHHHHhcCCCcHHHHHHhcCCCHHHHHHHHHHHHhccccce
Q 010353 19 GDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQA 66 (512)
Q Consensus 19 G~~v~~V~~~Ll~~G~ltl~~I~~~t~l~~~~Vr~aL~vLIQhn~V~~ 66 (512)
.....+|...+-..|..|..+|.+..+.+....+..|-.+++.|+++-
T Consensus 153 ~~~~~~il~~~~~~g~vt~~~la~~l~ws~~~a~e~L~~~e~~G~l~~ 200 (218)
T 3cuq_B 153 EEMVASALETVSEKGSLTSEEFAKLVGMSVLLAKERLLLAEKMGHLCR 200 (218)
T ss_dssp GGGHHHHHHHHHHTSCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHHHCCCcCHHHHHHHhCCCHHHHHHHHHHHHHcCCEEE
Confidence 346677777777789999999999999999999999999999999983
No 244
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A
Probab=62.23 E-value=25 Score=27.57 Aligned_cols=55 Identities=9% Similarity=0.090 Sum_probs=44.2
Q ss_pred HHHHHHhCchHHHHHHHHHhcCCCcchhhhhhhcCCCcccHHHHHHHHhhcccceEE
Q 010353 362 SVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLME 418 (512)
Q Consensus 362 ~~v~~~~G~~~~Ri~r~l~~~~~l~eek~i~~~ami~~k~~r~~Ly~L~~~g~v~~Q 418 (512)
.+..---++.-.+|++.|.. |.+ .-.+|++...++...+...|..|.+.|+|.-.
T Consensus 15 ~~~~~l~~~~r~~Il~~L~~-~~~-~~~ela~~l~is~~tvs~~L~~L~~~Glv~~~ 69 (102)
T 3pqk_A 15 NLLKTLSHPVRLMLVCTLVE-GEF-SVGELEQQIGIGQPTLSQQLGVLRESGIVETR 69 (102)
T ss_dssp HHHHHHCSHHHHHHHHHHHT-CCB-CHHHHHHHHTCCTTHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHcCCHHHHHHHHHHHh-CCC-CHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEE
Confidence 33333345556788888854 677 99999999999999999999999999999543
No 245
>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69
Probab=62.01 E-value=26 Score=27.90 Aligned_cols=50 Identities=20% Similarity=0.211 Sum_probs=42.2
Q ss_pred hCch-HHHHHHHHHhcCCCcchhhhhhhc-CCCcccHHHHHHHHhhcccceEEE
Q 010353 368 YGRD-AYRIFRLLSKSGRLLETDKISDTT-FVEKKDAPKILYKLWKDGYLLMEK 419 (512)
Q Consensus 368 ~G~~-~~Ri~r~l~~~~~l~eek~i~~~a-mi~~k~~r~~Ly~L~~~g~v~~QE 419 (512)
+|.. ..+|+..|. .|.. ...+|++.. .++...+-..|.+|.+.|+|.-..
T Consensus 11 l~~~~~~~IL~~L~-~~~~-~~~eLa~~l~~is~~tls~~L~~Le~~GlI~r~~ 62 (107)
T 2hzt_A 11 IGGKWKXVILXHLT-HGKK-RTSELKRLMPNITQKMLTQQLRELEADGVINRIV 62 (107)
T ss_dssp HCSTTHHHHHHHHT-TCCB-CHHHHHHHCTTSCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HcCccHHHHHHHHH-hCCC-CHHHHHHHhcCCCHHHHHHHHHHHHHCCCEEEee
Confidence 4444 467888886 6777 999999998 999999999999999999997543
No 246
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=61.96 E-value=19 Score=30.40 Aligned_cols=58 Identities=14% Similarity=0.267 Sum_probs=43.9
Q ss_pred CCcchhhhhhhcCCCcccHHHHHHHHhhcccceEEEEecCCCCCceEEEEEEehHHHHHHHH
Q 010353 384 RLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTGARQSQFLLWKVNRQILWKHVL 445 (512)
Q Consensus 384 ~l~eek~i~~~ami~~k~~r~~Ly~L~~~g~v~~QEvpk~~~~~~t~~lw~v~~~~~~~~~l 445 (512)
...+.++||+...++..++-+.|.+|.+.|||.+......+ ++- -.++|+..++..+.
T Consensus 50 ~~ps~~~LA~~~~~s~~~v~~~L~~L~~KGlI~i~~~~d~~--g~~--~~~ydL~pL~ekL~ 107 (135)
T 2v79_A 50 YFPTPNQLQEGMSISVEECTNRLRMFIQKGFLFIEECEDQN--GIK--FEKYSLQPLWGKLY 107 (135)
T ss_dssp CSCCHHHHHTTSSSCHHHHHHHHHHHHHHTSCEEEEEECTT--CCE--EEEEECHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEeEecCC--Cce--EEEeeHHHHHHHHH
Confidence 33499999999999999999999999999999988765543 222 24556665555543
No 247
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=61.86 E-value=22 Score=30.23 Aligned_cols=50 Identities=20% Similarity=0.198 Sum_probs=41.3
Q ss_pred chhHHHHHHHHHhc-CCCcHHHHHHhc-----CCCHHHHHHHHHHHHhccccceec
Q 010353 19 GDLVAKVCECLLRK-GPLTRQNVKRYT-----ELSDEQVKNALLVLIQQNCVQAFT 68 (512)
Q Consensus 19 G~~v~~V~~~Ll~~-G~ltl~~I~~~t-----~l~~~~Vr~aL~vLIQhn~V~~~~ 68 (512)
-+-=..|..+|... +.+|..+|.... ++++..|-..|-.|.+.|+|.-..
T Consensus 21 T~qR~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~~ 76 (145)
T 2fe3_A 21 TPQRHAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLVKELT 76 (145)
T ss_dssp CHHHHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred CHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCEEEEe
Confidence 34445688888874 689999998776 799999999999999999998444
No 248
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=61.41 E-value=12 Score=31.49 Aligned_cols=54 Identities=17% Similarity=0.191 Sum_probs=43.3
Q ss_pred hhHHHHHHHHHHc--ccCCHHHHHHHHhhcccCCCccCHHHHHHHHHHHHhcccccccC
Q 010353 111 QQCVELVQGLLEH--GRLTLKQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCP 167 (512)
Q Consensus 111 ~~a~~Iv~~lL~~--G~l~~~~li~~~~~~~~~~~~~~~~~l~~~f~~Lv~~~fi~rv~ 167 (512)
..=..|++.|... +++++.+|.+.+....+ ..+...|-.++..|++.|+|.++.
T Consensus 18 ~qR~~Il~~L~~~~~~~~sa~ei~~~l~~~~~---~is~aTVYR~L~~L~e~Glv~~~~ 73 (136)
T 1mzb_A 18 LPRVKILQMLDSAEQRHMSAEDVYKALMEAGE---DVGLATVYRVLTQFEAAGLVVRHN 73 (136)
T ss_dssp HHHHHHHHHHHCC-CCSBCHHHHHHHHHHTTC---CCCHHHHHHHHHHHHHHTSEEEEC
T ss_pred HHHHHHHHHHHhCCCCCCCHHHHHHHHHhhCC---CCCHHHHHHHHHHHHHCCcEEEEE
Confidence 4456677777765 69999999999865432 357889999999999999999985
No 249
>1okr_A MECI, methicillin resistance regulatory protein MECI; bacterial antibiotic resistance, MECI protein, transcriptional regulatory element; 2.4A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1sax_A 1sd7_A 2d45_A 1sd6_A
Probab=61.26 E-value=36 Score=27.39 Aligned_cols=48 Identities=10% Similarity=0.266 Sum_probs=41.0
Q ss_pred chHHHHHHHHHhcCCCcchhhhhhhcC----CCcccHHHHHHHHhhcccceEE
Q 010353 370 RDAYRIFRLLSKSGRLLETDKISDTTF----VEKKDAPKILYKLWKDGYLLME 418 (512)
Q Consensus 370 ~~~~Ri~r~l~~~~~l~eek~i~~~am----i~~k~~r~~Ly~L~~~g~v~~Q 418 (512)
..-..|+.+|...+.+ ...+|++... ++...+..+|.+|.+.|||.-.
T Consensus 10 ~~~~~vL~~l~~~~~~-t~~ela~~l~~~~~~s~~tv~~~l~~L~~~Glv~r~ 61 (123)
T 1okr_A 10 SAEWEVMNIIWMKKYA-SANNIIEEIQMQKDWSPKTIRTLITRLYKKGFIDRK 61 (123)
T ss_dssp HHHHHHHHHHHHHSSE-EHHHHHHHHHHHCCCCHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHHHhCCCc-CHHHHHHHHhccCCCcHhhHHHHHHHHHHCCCeEEE
Confidence 3446788888777777 9999999988 7799999999999999999655
No 250
>2fbk_A Transcriptional regulator, MARR family; winged-helix-turn-helix; 2.30A {Deinococcus radiodurans} SCOP: a.4.5.28
Probab=61.06 E-value=12 Score=32.82 Aligned_cols=50 Identities=12% Similarity=0.237 Sum_probs=42.9
Q ss_pred hCchHHHHHHHHHhcCC---CcchhhhhhhcCCCcccHHHHHHHHhhcccceEE
Q 010353 368 YGRDAYRIFRLLSKSGR---LLETDKISDTTFVEKKDAPKILYKLWKDGYLLME 418 (512)
Q Consensus 368 ~G~~~~Ri~r~l~~~~~---l~eek~i~~~ami~~k~~r~~Ly~L~~~g~v~~Q 418 (512)
+...-.+|+..|...+. + ...+|++...++...+-..+.+|.+.|||.-+
T Consensus 67 lt~~~~~iL~~L~~~~~~~~~-t~~eLa~~l~is~~tvs~~l~~Le~~GlV~r~ 119 (181)
T 2fbk_A 67 LNAAGWDLLLTLYRSAPPEGL-RPTELSALAAISGPSTSNRIVRLLEKGLIERR 119 (181)
T ss_dssp CCHHHHHHHHHHHHHCCSSCB-CHHHHHHHCSCCSGGGSSHHHHHHHHTSEECC
T ss_pred CCHHHHHHHHHHHHcCCCCCC-CHHHHHHHHCCCHHHHHHHHHHHHHCcCEEec
Confidence 34456788888888765 6 99999999999999999999999999999544
No 251
>1t6s_A Conserved hypothetical protein; A winged helix-turn-helix, structural genomics, BSGC structu by NIH, protein structure initiative, PSI; 1.95A {Chlorobium tepidum tls} SCOP: a.4.5.60 a.4.5.60
Probab=60.80 E-value=63 Score=28.22 Aligned_cols=119 Identities=13% Similarity=0.202 Sum_probs=78.2
Q ss_pred hhHHHHHHHHHhcC-CCcHHHHHHhcC--CCHHHHHHHHHHHHhc------cccceecccCCCCCCCCCCCccEEEechh
Q 010353 20 DLVAKVCECLLRKG-PLTRQNVKRYTE--LSDEQVKNALLVLIQQ------NCVQAFTTEQPDGFADGPKANTQYVVLFD 90 (512)
Q Consensus 20 ~~v~~V~~~Ll~~G-~ltl~~I~~~t~--l~~~~Vr~aL~vLIQh------n~V~~~~~~~~~~~~~~~~~~~~Y~~~~~ 90 (512)
++.+.|=..|+..| ++|+.+|.+.++ ++...|+.+|--|.+. |+-. .... + -|.+-..
T Consensus 7 ~~~~~iEAlLf~~~~pvs~~~La~~~~~~~~~~~v~~~l~~L~~~y~~~~rg~~l-~~v~--~----------gy~l~t~ 73 (162)
T 1t6s_A 7 QLLRSLEALIFSSEEPVNLQTLSQITAHKFTPSELQEAVDELNRDYEATGRTFRI-HAIA--G----------GYRFLTE 73 (162)
T ss_dssp HHHHHHHHHHHHCSSCBCHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHTCSEEE-EEET--T----------EEEEEEC
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHhCcCCCHHHHHHHHHHHHHHhhhCCCCEEE-EEEC--C----------EEEEEEc
Confidence 34466667777776 699999999999 9999999999999763 2111 0111 1 1222221
Q ss_pred hHHHHhchhhHHHH-----HHHHhhhhHHHHHHHHHHcccCCHHHHHHHHhhcccCCCccCHHHHHHHHHHHHhcccccc
Q 010353 91 NILHRVRFAKFLTI-----LSQEFDQQCVELVQGLLEHGRLTLKQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVER 165 (512)
Q Consensus 91 ~il~rlR~pr~l~~-----i~~~~G~~a~~Iv~~lL~~G~l~~~~li~~~~~~~~~~~~~~~~~l~~~f~~Lv~~~fi~r 165 (512)
. -|..|+.- -...+...+-+++..+..+|-+|-.+|-+--... +...+..|+..|||..
T Consensus 74 ~-----~~~~~v~~~~~~~~~~~LS~aaLEtLaiIay~qPiTR~eI~~irGv~-----------~~~~v~~L~e~glI~e 137 (162)
T 1t6s_A 74 P-----EFADLVRQLLAPVIQRRLSRSMLEVLAVVAWHQPVTKGEIQQIRGAS-----------PDYSIDRLLARGLIEV 137 (162)
T ss_dssp G-----GGHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHCSEEHHHHHHHHTCC-----------CCSHHHHHHHTTSEEE
T ss_pred H-----HHHHHHHHHhcccccCccCHHHHHHHHHHHHcCCcCHHHHHHHHCCC-----------HHHHHHHHHHCCCEEE
Confidence 1 11111111 1235667777899999999999998886553211 4567899999999988
Q ss_pred cC
Q 010353 166 CP 167 (512)
Q Consensus 166 v~ 167 (512)
++
T Consensus 138 ~g 139 (162)
T 1t6s_A 138 RG 139 (162)
T ss_dssp EE
T ss_pred cc
Confidence 74
No 252
>1mkm_A ICLR transcriptional regulator; structural genomics, winged helix-turn-helix, PSI, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.33 d.110.2.2
Probab=60.78 E-value=7.2 Score=36.60 Aligned_cols=46 Identities=20% Similarity=0.348 Sum_probs=40.7
Q ss_pred hHHHHHHHHHhcC-CCcchhhhhhhcCCCcccHHHHHHHHhhcccceE
Q 010353 371 DAYRIFRLLSKSG-RLLETDKISDTTFVEKKDAPKILYKLWKDGYLLM 417 (512)
Q Consensus 371 ~~~Ri~r~l~~~~-~l~eek~i~~~ami~~k~~r~~Ly~L~~~g~v~~ 417 (512)
.+.+|+++|...+ .+ .-.+|++...+|...+..+|..|.+.|||.-
T Consensus 9 r~l~iL~~l~~~~~~~-~~~ela~~~gl~~stv~r~l~~L~~~G~v~~ 55 (249)
T 1mkm_A 9 KAFEILDFIVKNPGDV-SVSEIAEKFNMSVSNAYKYMVVLEEKGFVLR 55 (249)
T ss_dssp HHHHHHHHHHHCSSCB-CHHHHHHHTTCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHhCCCCC-CHHHHHHHHCcCHHHHHHHHHHHHHCCcEEE
Confidence 4778888887765 46 9999999999999999999999999999953
No 253
>2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis}
Probab=60.07 E-value=20 Score=28.94 Aligned_cols=48 Identities=17% Similarity=0.216 Sum_probs=41.8
Q ss_pred CchHHHHHHHHHhcCCCcchhhhhhhcCCCcccHHHHHHHHhhcccceEE
Q 010353 369 GRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLME 418 (512)
Q Consensus 369 G~~~~Ri~r~l~~~~~l~eek~i~~~ami~~k~~r~~Ly~L~~~g~v~~Q 418 (512)
...-.+|+..|.. +.. ...+|++...++...+...|.+|.+.|+|...
T Consensus 31 ~~~~~~il~~L~~-~~~-s~~ela~~l~is~stvsr~l~~Le~~Glv~~~ 78 (119)
T 2lkp_A 31 TPSRLMILTQLRN-GPL-PVTDLAEAIGMEQSAVSHQLRVLRNLGLVVGD 78 (119)
T ss_dssp CHHHHHHHHHHHH-CCC-CHHHHHHHHSSCHHHHHHHHHHHHHHCSEEEE
T ss_pred CHHHHHHHHHHHH-CCC-CHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 3445778888877 677 99999999999999999999999999999665
No 254
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=59.73 E-value=15 Score=31.55 Aligned_cols=54 Identities=17% Similarity=0.207 Sum_probs=43.6
Q ss_pred hhHHHHHHHHHHc-ccCCHHHHHHHHhhcccCCCccCHHHHHHHHHHHHhcccccccC
Q 010353 111 QQCVELVQGLLEH-GRLTLKQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCP 167 (512)
Q Consensus 111 ~~a~~Iv~~lL~~-G~l~~~~li~~~~~~~~~~~~~~~~~l~~~f~~Lv~~~fi~rv~ 167 (512)
..=..|++.|..+ +++++.+|.+.+....+ ..+...|-.++..|++.|+|.++.
T Consensus 27 ~qR~~IL~~l~~~~~~~sa~ei~~~l~~~~~---~is~aTVYR~L~~L~e~Glv~~~~ 81 (150)
T 2xig_A 27 KQREEVVSVLYRSGTHLSPEEITHSIRQKDK---NTSISSVYRILNFLEKENFISVLE 81 (150)
T ss_dssp HHHHHHHHHHHHCSSCBCHHHHHHHHHHHST---TCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHhCC---CCCHhhHHHHHHHHHHCCcEEEEE
Confidence 4456778877765 78999999999865433 347889999999999999999985
No 255
>3f8b_A Transcriptional regulator, PADR-like family; winged helix turn helix, transcription regulator; 2.00A {Lactococcus lactis subsp} SCOP: a.4.5.0 PDB: 3f8c_A* 3f8f_A*
Probab=59.53 E-value=59 Score=26.33 Aligned_cols=67 Identities=10% Similarity=0.150 Sum_probs=46.5
Q ss_pred chhHHHHHHHHHhcCCCcHHHHHHhc--------CCCHHHHHHHHHHHHhccccceecccCCCCCCCCCCCccEEEechh
Q 010353 19 GDLVAKVCECLLRKGPLTRQNVKRYT--------ELSDEQVKNALLVLIQQNCVQAFTTEQPDGFADGPKANTQYVVLFD 90 (512)
Q Consensus 19 G~~v~~V~~~Ll~~G~ltl~~I~~~t--------~l~~~~Vr~aL~vLIQhn~V~~~~~~~~~~~~~~~~~~~~Y~~~~~ 90 (512)
|.+--.|-..| ..|+.+-.+|.+.. ++++..|...|-.|.+.|+|.......+++ +...+|++-..
T Consensus 11 g~l~~~IL~~L-~~~~~~Gyei~~~l~~~~~~~~~i~~gtly~~L~rLe~~GlI~~~~~~~~~~-----~~rk~Y~LT~~ 84 (116)
T 3f8b_A 11 AQTNVILLNVL-KQGDNYVYGIIKQVKEASNGEMELNEATLYTIFKRLEKDGIISSYWGDESQG-----GRRKYYRLTEI 84 (116)
T ss_dssp HHHHHHHHHHH-HHCCBCHHHHHHHHHHHTTTCCCCCHHHHHHHHHHHHHTTSEEEEEEC---------CCEEEEEECHH
T ss_pred chHHHHHHHHH-HhCCCCHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHCCCEEEEeeccCCC-----CCceEEEECHH
Confidence 44555555555 46888888887764 689999999999999999998443221121 23568888866
Q ss_pred h
Q 010353 91 N 91 (512)
Q Consensus 91 ~ 91 (512)
+
T Consensus 85 G 85 (116)
T 3f8b_A 85 G 85 (116)
T ss_dssp H
T ss_pred H
Confidence 5
No 256
>2k4b_A Transcriptional regulator; DNA binding protein, winged helix; NMR {Lactococcus lactis subsp}
Probab=59.50 E-value=17 Score=28.90 Aligned_cols=46 Identities=15% Similarity=0.101 Sum_probs=40.4
Q ss_pred hhHHHHHHHHHhcCCCcHHHHHHhcC----CCHHHHHHHHHHHHhccccc
Q 010353 20 DLVAKVCECLLRKGPLTRQNVKRYTE----LSDEQVKNALLVLIQQNCVQ 65 (512)
Q Consensus 20 ~~v~~V~~~Ll~~G~ltl~~I~~~t~----l~~~~Vr~aL~vLIQhn~V~ 65 (512)
+.=..|-.+|-..|++|..+|+..++ +++..|...|-.|.+.|+|.
T Consensus 35 ~~e~~VL~~L~~~~~~t~~eL~~~l~~~~~~s~sTVt~~L~rLe~KGlV~ 84 (99)
T 2k4b_A 35 NAELIVMRVIWSLGEARVDEIYAQIPQELEWSLATVKTLLGRLVKKEMLS 84 (99)
T ss_dssp CSCSHHHHHHHHHSCEEHHHHHHTCCGGGCCCHHHHHHHHHHHHHTTSCE
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHhcccCCCHhhHHHHHHHHHHCCCEE
Confidence 33346888999999999999999875 67999999999999999998
No 257
>3mq0_A Transcriptional repressor of the blcabc operon; helix-turn-helix, GAF fold, transcription repressor; 1.79A {Agrobacterium tumefaciens}
Probab=59.10 E-value=6.7 Score=37.57 Aligned_cols=42 Identities=14% Similarity=0.308 Sum_probs=34.9
Q ss_pred HHHHHHHhcC-CCcHHHHHHhcCCCHHHHHHHHHHHHhccccc
Q 010353 24 KVCECLLRKG-PLTRQNVKRYTELSDEQVKNALLVLIQQNCVQ 65 (512)
Q Consensus 24 ~V~~~Ll~~G-~ltl~~I~~~t~l~~~~Vr~aL~vLIQhn~V~ 65 (512)
.|..+|...+ ++|+.+|++.+++|.+.+..-|-.|.++|+|.
T Consensus 34 ~IL~~l~~~~~~ltl~eia~~lgl~ksTv~RlL~tL~~~G~v~ 76 (275)
T 3mq0_A 34 RILDLVAGSPRDLTAAELTRFLDLPKSSAHGLLAVMTELDLLA 76 (275)
T ss_dssp HHHHHHHHCSSCEEHHHHHHHHTCC--CHHHHHHHHHHTTSEE
T ss_pred HHHHHHhhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEE
Confidence 3555666654 69999999999999999999999999999997
No 258
>1bja_A Transcription regulatory protein MOTA; activation domain, middle mode transcription, alpha helical structure, transcription regulation; 2.19A {Enterobacteria phage T4} SCOP: a.4.5.9 PDB: 1i1s_A
Probab=58.34 E-value=15 Score=29.14 Aligned_cols=46 Identities=22% Similarity=0.324 Sum_probs=41.5
Q ss_pred hhHHHHHHHHHhcCCCcHHHHHH-hcCCCHHHHHHHHHHHHhccccc
Q 010353 20 DLVAKVCECLLRKGPLTRQNVKR-YTELSDEQVKNALLVLIQQNCVQ 65 (512)
Q Consensus 20 ~~v~~V~~~Ll~~G~ltl~~I~~-~t~l~~~~Vr~aL~vLIQhn~V~ 65 (512)
+.--.+-..|-++|..|+.+|+. ..+++.+.|-..+=+|++.|+|.
T Consensus 16 ~~QfsiL~~L~~~~~~t~~~Lae~~l~~drstvsrnl~~L~r~GlVe 62 (95)
T 1bja_A 16 EKTATILITIAKKDFITAAEVREVHPDLGNAVVNSNIGVLIKKGLVE 62 (95)
T ss_dssp HHHHHHHHHHHHSTTBCHHHHHHTCTTSCHHHHHHHHHHHHTTTSEE
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHhcccHHHHHHHHHHHHHCCCee
Confidence 44556777888999999999999 99999999999999999999997
No 259
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=58.01 E-value=12 Score=31.86 Aligned_cols=52 Identities=21% Similarity=0.162 Sum_probs=41.8
Q ss_pred HHHHHHHHHHc-ccCCHHHHHHHHhhcccCCCccCHHHHHHHHHHHHhcccccccC
Q 010353 113 CVELVQGLLEH-GRLTLKQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCP 167 (512)
Q Consensus 113 a~~Iv~~lL~~-G~l~~~~li~~~~~~~~~~~~~~~~~l~~~f~~Lv~~~fi~rv~ 167 (512)
=..|++.|..+ +++++.+|.+.+....+ ..+...|-.++..|++.|+|.++.
T Consensus 16 R~~Il~~L~~~~~h~sa~eI~~~l~~~~~---~is~aTVYR~L~~L~e~Glv~~~~ 68 (139)
T 3mwm_A 16 RAAVSAALQEVEEFRSAQELHDMLKHKGD---AVGLTTVYRTLQSLADAGEVDVLR 68 (139)
T ss_dssp HHHHHHHHTTCSSCEEHHHHHHHHHHTTC---CCCHHHHHHHHHHHHHTTSSEEEE
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHhCC---CCCHHHHHHHHHHHHHCCCEEEEE
Confidence 45677777664 79999999999865432 357889999999999999999985
No 260
>2p4w_A Transcriptional regulatory protein ARSR family; archaea, PHR, heat shock, transcriptional regulation, winged DNA binding; 2.60A {Pyrococcus furiosus} SCOP: a.4.5.64
Probab=57.92 E-value=22 Score=32.20 Aligned_cols=51 Identities=20% Similarity=0.090 Sum_probs=44.1
Q ss_pred CchHHHHHHHHHhcCCCcchhhhhhhcCCCcccHHHHHHHHhhcccceEEEEe
Q 010353 369 GRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLV 421 (512)
Q Consensus 369 G~~~~Ri~r~l~~~~~l~eek~i~~~ami~~k~~r~~Ly~L~~~g~v~~QEvp 421 (512)
+..-.+|+.+|. +|.+ .-.+|++...++...+-..|..|.+.|+|.-...+
T Consensus 14 ~~~rl~IL~~L~-~~~~-s~~eLa~~l~is~stvs~hLk~Le~~GLV~~~~~~ 64 (202)
T 2p4w_A 14 NETRRRILFLLT-KRPY-FVSELSRELGVGQKAVLEHLRILEEAGLIESRVEK 64 (202)
T ss_dssp SHHHHHHHHHHH-HSCE-EHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECC
T ss_pred CHHHHHHHHHHH-hCCC-CHHHHHHHHCcCHHHHHHHHHHHHHCCceEEEeec
Confidence 445678888884 5677 99999999999999999999999999999887654
No 261
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=57.86 E-value=15 Score=32.01 Aligned_cols=54 Identities=20% Similarity=0.208 Sum_probs=43.9
Q ss_pred hhHHHHHHHHHHc-ccCCHHHHHHHHhhc--ccCCCccCHHHHHHHHHHHHhcccccccC
Q 010353 111 QQCVELVQGLLEH-GRLTLKQMFDRAKSS--EKEGNLVDLDSLRETLVKLVTAHYVERCP 167 (512)
Q Consensus 111 ~~a~~Iv~~lL~~-G~l~~~~li~~~~~~--~~~~~~~~~~~l~~~f~~Lv~~~fi~rv~ 167 (512)
..=..|++.|..+ +++|+.+|.+.+... .+ ..+...|-.++..|++.|+|.++.
T Consensus 33 ~qR~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~---~is~aTVYRtL~~L~e~Glv~~i~ 89 (162)
T 4ets_A 33 KQREVLLKTLYHSDTHYTPESLYMEIKQAEPDL---NVGIATVYRTLNLLEEAEMVTSIS 89 (162)
T ss_dssp HHHHHHHHHHHSCCSCBCHHHHHHHHHHHCGGG---CCCHHHHHHHHHHHHHTTSEEECC
T ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCC---CCCHHHHHHHHHHHHHCCCEEEEE
Confidence 4556777877775 799999999998654 32 347889999999999999999984
No 262
>3r4k_A Transcriptional regulator, ICLR family; DNA/RNA-binding 3-helical bundle, profilin-like, structural joint center for structural genomics, JCSG; 2.46A {Ruegeria SP}
Probab=57.55 E-value=6.7 Score=37.18 Aligned_cols=41 Identities=10% Similarity=0.148 Sum_probs=35.6
Q ss_pred HHHHHHh-cCCCcHHHHHHhcCCCHHHHHHHHHHHHhccccc
Q 010353 25 VCECLLR-KGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQ 65 (512)
Q Consensus 25 V~~~Ll~-~G~ltl~~I~~~t~l~~~~Vr~aL~vLIQhn~V~ 65 (512)
|..+|.. .+++|+.+|++.++++.+.+..-|-.|.++|+|.
T Consensus 11 IL~~l~~~~~~lsl~eia~~lgl~ksT~~RlL~tL~~~G~v~ 52 (260)
T 3r4k_A 11 LLTYFNHGRLEIGLSDLTRLSGMNKATVYRLMSELQEAGFVE 52 (260)
T ss_dssp HHTTCBTTBSEEEHHHHHHHHCSCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHhhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEE
Confidence 4444443 4789999999999999999999999999999997
No 263
>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19
Probab=57.34 E-value=9.7 Score=28.85 Aligned_cols=34 Identities=12% Similarity=0.229 Sum_probs=31.6
Q ss_pred cCCCcHHHHHHhcCCCHHHHHHHHHHHHhccccc
Q 010353 32 KGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQ 65 (512)
Q Consensus 32 ~G~ltl~~I~~~t~l~~~~Vr~aL~vLIQhn~V~ 65 (512)
.+..|..+|++..|++.+.|.+.|..|..-|.|.
T Consensus 27 ~~~~Ta~~IAkkLg~sK~~vNr~LY~L~kkG~V~ 60 (75)
T 1sfu_A 27 NDYTTAISLSNRLKINKKKINQQLYKLQKEDTVK 60 (75)
T ss_dssp TCEECHHHHHHHTTCCHHHHHHHHHHHHHTTSEE
T ss_pred CcchHHHHHHHHHCCCHHHHHHHHHHHHHCCCEe
Confidence 4458999999999999999999999999999996
No 264
>1xd7_A YWNA; structural genomics, protein structure initiative, winged HE binding, hypothetical protein, PSI; 2.30A {Bacillus subtilis subsp} SCOP: a.4.5.55
Probab=57.27 E-value=9.7 Score=32.52 Aligned_cols=50 Identities=18% Similarity=0.138 Sum_probs=42.0
Q ss_pred HhCchHHHHHHHHHhcCCCcchhhhhhhcCCCcccHHHHHHHHhhcccceE
Q 010353 367 RYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLM 417 (512)
Q Consensus 367 ~~G~~~~Ri~r~l~~~~~l~eek~i~~~ami~~k~~r~~Ly~L~~~g~v~~ 417 (512)
+.+.-|+|++-.|.....- .-++|++..-+|.+-++++|.+|.+.|+|.-
T Consensus 6 ~~~~yAl~~L~~La~~~~~-s~~~IA~~~~i~~~~l~kIl~~L~~aGlv~s 55 (145)
T 1xd7_A 6 SRLAVAIHILSLISMDEKT-SSEIIADSVNTNPVVVRRMISLLKKADILTS 55 (145)
T ss_dssp CHHHHHHHHHHHHHTCSCC-CHHHHHHHHTSCHHHHHHHHHHHHHTTSEEC
T ss_pred hHHHHHHHHHHHHHhCCCC-CHHHHHHHHCcCHHHHHHHHHHHHHCCceEe
Confidence 3456688999999864333 7889999999999999999999999999944
No 265
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=57.27 E-value=15 Score=30.63 Aligned_cols=54 Identities=13% Similarity=0.150 Sum_probs=42.7
Q ss_pred hHHHHHHHHHHc-ccCCHHHHHHHHhhcccCCCccCHHHHHHHHHHHHhcccccccCC
Q 010353 112 QCVELVQGLLEH-GRLTLKQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPA 168 (512)
Q Consensus 112 ~a~~Iv~~lL~~-G~l~~~~li~~~~~~~~~~~~~~~~~l~~~f~~Lv~~~fi~rv~~ 168 (512)
.=..|++.|... +++|+++|.+.+....+ ..+.+.|-.++..|++.|+|.++..
T Consensus 12 qR~~Il~~l~~~~~~~sa~ei~~~l~~~~~---~is~~TVYR~L~~L~e~Glv~~~~~ 66 (131)
T 2o03_A 12 QRAAISTLLETLDDFRSAQELHDELRRRGE---NIGLTTVYRTLQSMASSGLVDTLHT 66 (131)
T ss_dssp HHHHHHHHHHHCCSCEEHHHHHHHHHHTTC---CCCHHHHHHHHHHHHTTTSEEEEEC
T ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHhCC---CCCHhhHHHHHHHHHHCCCEEEEEe
Confidence 345677777764 68999999999865432 3578899999999999999999853
No 266
>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=57.11 E-value=7.2 Score=32.70 Aligned_cols=48 Identities=15% Similarity=0.286 Sum_probs=42.1
Q ss_pred chHHHHHHHHHhcCCCcchhhhhhhcCCCcccHHHHHHHHhhcccceEE
Q 010353 370 RDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLME 418 (512)
Q Consensus 370 ~~~~Ri~r~l~~~~~l~eek~i~~~ami~~k~~r~~Ly~L~~~g~v~~Q 418 (512)
..-.+|+..|...+.+ ...+|++...++...+...+.+|.+.|||.-+
T Consensus 40 ~~~~~iL~~l~~~~~~-~~~~la~~l~~~~~tvs~~l~~L~~~glv~r~ 87 (147)
T 1z91_A 40 YPQYLALLLLWEHETL-TVKKMGEQLYLDSGTLTPMLKRMEQQGLITRK 87 (147)
T ss_dssp HHHHHHHHHHHHHSEE-EHHHHHHTTTCCHHHHHHHHHHHHHHTSEECC
T ss_pred HHHHHHHHHHHHCCCC-CHHHHHHHHCCCcCcHHHHHHHHHHCCCEEec
Confidence 3456788888887777 99999999999999999999999999999544
No 267
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=56.43 E-value=81 Score=25.79 Aligned_cols=35 Identities=9% Similarity=0.068 Sum_probs=33.1
Q ss_pred hcCCCcHHHHHHhcCCCHHHHHHHHHHHHhccccc
Q 010353 31 RKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQ 65 (512)
Q Consensus 31 ~~G~ltl~~I~~~t~l~~~~Vr~aL~vLIQhn~V~ 65 (512)
..|++|+.+|++.++++++.|...|-.|.+.|+|.
T Consensus 28 ~~~~~s~~ela~~l~is~~tv~~~l~~Le~~Gli~ 62 (139)
T 2x4h_A 28 SGEGAKINRIAKDLKIAPSSVFEEVSHLEEKGLVK 62 (139)
T ss_dssp TTSCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred cCCCcCHHHHHHHhCCChHHHHHHHHHHHHCCCEE
Confidence 36789999999999999999999999999999997
No 268
>2lnb_A Z-DNA-binding protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, immune system; NMR {Homo sapiens}
Probab=56.36 E-value=30 Score=26.28 Aligned_cols=47 Identities=15% Similarity=0.301 Sum_probs=42.2
Q ss_pred chhHHHHHHHHHhcC-CCcHHHHHHhcCCCHHHHHHHHHHHHhccccc
Q 010353 19 GDLVAKVCECLLRKG-PLTRQNVKRYTELSDEQVKNALLVLIQQNCVQ 65 (512)
Q Consensus 19 G~~v~~V~~~Ll~~G-~ltl~~I~~~t~l~~~~Vr~aL~vLIQhn~V~ 65 (512)
++.-.+|..+|-.-| ++.-.+|+..++++.+.|-++|-.|=.-+.|.
T Consensus 18 ~d~eekVLe~LkeaG~PlkageIae~~GvdKKeVdKaik~LKkEgkI~ 65 (80)
T 2lnb_A 18 GHLEQRILQVLTEAGSPVKLAQLVKECQAPKRELNQVLYRMKKELKVS 65 (80)
T ss_dssp HHHHHHHHHHHHHHTSCEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEE
T ss_pred chHHHHHHHHHHHcCCCCCHHHHHHHHCCCHHHHHHHHHHHHHcCCcc
Confidence 456788999999886 78889999999999999999999999999886
No 269
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*
Probab=56.21 E-value=10 Score=31.76 Aligned_cols=43 Identities=30% Similarity=0.485 Sum_probs=36.8
Q ss_pred HHHHHHhcCCCcchhhhhhhcCCCcccHHHHHHHHhhcccceEE
Q 010353 375 IFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLME 418 (512)
Q Consensus 375 i~r~l~~~~~l~eek~i~~~ami~~k~~r~~Ly~L~~~g~v~~Q 418 (512)
|+.++...+.+ ...+|++...++...+...+.+|.+.|||.-.
T Consensus 13 i~~l~~~~~~~-~~~ela~~l~vs~~tvs~~l~~Le~~Glv~r~ 55 (142)
T 1on2_A 13 IYMLIEEKGYA-RVSDIAEALAVHPSSVTKMVQKLDKDEYLIYE 55 (142)
T ss_dssp HHHHHHHHSSC-CHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHhhcCCC-CHHHHHHHhCCCHHHHHHHHHHHHHCCCEEEe
Confidence 45555566777 99999999999999999999999999999543
No 270
>2g9w_A Conserved hypothetical protein; DNA-binding domain, bacterial transcription repressor, DNA B protein; 1.80A {Mycobacterium tuberculosis} SCOP: a.4.5.39
Probab=56.13 E-value=18 Score=30.40 Aligned_cols=55 Identities=11% Similarity=0.135 Sum_probs=43.5
Q ss_pred hhhhHHHHHHHHHH-cccCCHHHHHHHHhhcccCCCccCHHHHHHHHHHHHhcccccccC
Q 010353 109 FDQQCVELVQGLLE-HGRLTLKQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCP 167 (512)
Q Consensus 109 ~G~~a~~Iv~~lL~-~G~l~~~~li~~~~~~~~~~~~~~~~~l~~~f~~Lv~~~fi~rv~ 167 (512)
.+..-..|+..|.. +|.++..+|.+.+... ...+...+...+..|.+.|||.+.+
T Consensus 7 lt~~e~~vL~~L~~~~~~~t~~el~~~l~~~----~~~~~~Tvt~~l~rLe~kGlv~r~~ 62 (138)
T 2g9w_A 7 LGDLERAVMDHLWSRTEPQTVRQVHEALSAR----RDLAYTTVMAVLQRLAKKNLVLQIR 62 (138)
T ss_dssp CCHHHHHHHHHHHTCSSCEEHHHHHHHHTTT----CCCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred CCHHHHHHHHHHHhcCCCCCHHHHHHHHhcc----CCCCHHHHHHHHHHHHHCCCEEEEe
Confidence 34555678888888 5999999999987532 1136788999999999999999985
No 271
>1ucr_A Protein DSVD; dissimilatory sulfite reductase D, DNA binding motif, sulfate-reducing bacteria, winged-helix motif, unknown function; 1.20A {Desulfovibrio vulgaris} SCOP: a.4.5.45 PDB: 1wq2_A
Probab=56.06 E-value=21 Score=27.06 Aligned_cols=48 Identities=17% Similarity=0.309 Sum_probs=37.4
Q ss_pred HHHHHHHHhc----CCCcHHHHHHhc-CCCHHHHHHHHHHHHhccccceeccc
Q 010353 23 AKVCECLLRK----GPLTRQNVKRYT-ELSDEQVKNALLVLIQQNCVQAFTTE 70 (512)
Q Consensus 23 ~~V~~~Ll~~----G~ltl~~I~~~t-~l~~~~Vr~aL~vLIQhn~V~~~~~~ 70 (512)
++|...|-.. ...=+.++.... +..++.|++++-.|+.-+-+.||...
T Consensus 6 ~~Ile~l~~k~~~KskfYf~D~~k~~P~~k~r~vKK~~~~LV~Eg~leywSSG 58 (78)
T 1ucr_A 6 QKVVDFLNSKSGSKSKFYFNDFTDLFPDMKQREVKKILTALVNDEVLEYWSSG 58 (78)
T ss_dssp HHHHHHHSSHHHHSSCEEHHHHHHHCTTSCHHHHHHHHHHHHHTTSEEEEEET
T ss_pred HHHHHHHHhcccccccchHHHHHHHccccCHHHHHHHHHHHHhcCceEEEecC
Confidence 4555555543 244478888886 89999999999999999999988765
No 272
>2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, STR genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} SCOP: a.4.5.28
Probab=56.03 E-value=17 Score=32.88 Aligned_cols=61 Identities=15% Similarity=0.131 Sum_probs=45.4
Q ss_pred CchHHHHHHHHHhcCCCcchhhhhhhcCCCcccHHHHHHHHhhcccceEEEEecCCCCCceEEEE
Q 010353 369 GRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTGARQSQFLLW 433 (512)
Q Consensus 369 G~~~~Ri~r~l~~~~~l~eek~i~~~ami~~k~~r~~Ly~L~~~g~v~~QEvpk~~~~~~t~~lw 433 (512)
...-++|+.+|...+.+ ...+|++...++...+-.++.+|.+.|||.-+.-| ...|..++.
T Consensus 47 t~~q~~iL~~L~~~~~~-t~~eLa~~l~i~~stvs~~l~~Le~~GlV~r~~~~---~DrR~~~l~ 107 (207)
T 2fxa_A 47 NINEHHILWIAYQLNGA-SISEIAKFGVMHVSTAFNFSKKLEERGYLRFSKRL---NDKRNTYVQ 107 (207)
T ss_dssp CHHHHHHHHHHHHHTSE-EHHHHHHHTTCCHHHHHHHHHHHHHHTSEEEECC---------CEEE
T ss_pred CHHHHHHHHHHHHCCCc-CHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEecCC---CCCceEEEE
Confidence 34457888888888887 99999999999999999999999999999544322 234555444
No 273
>3f6v_A Possible transcriptional regulator, ARSR family protein; probable transcriptional repressor ARSR family, structural genomics, PSI-2; 1.48A {Rhodococcus SP}
Probab=55.60 E-value=21 Score=30.70 Aligned_cols=60 Identities=17% Similarity=0.233 Sum_probs=47.1
Q ss_pred chHHHHHHHHHhcCCCcchhhhhhhcCCCcccHHHHHHHHhhcccceEEEEecCCCCCceEEEEEEehH
Q 010353 370 RDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTGARQSQFLLWKVNRQ 438 (512)
Q Consensus 370 ~~~~Ri~r~l~~~~~l~eek~i~~~ami~~k~~r~~Ly~L~~~g~v~~QEvpk~~~~~~t~~lw~v~~~ 438 (512)
..-.+|+++|. +|.+ .-.+|++...++...+...|..|.+.|+|.... . ++. -+|+++..
T Consensus 58 p~R~~IL~~L~-~~~~-t~~eLa~~lgls~stvs~hL~~L~~aGlV~~~~---~---Gr~-~~y~lt~~ 117 (151)
T 3f6v_A 58 PTRRRLVQLLT-SGEQ-TVNNLAAHFPASRSAISQHLRVLTEAGLVTPRK---D---GRF-RYYRLDPQ 117 (151)
T ss_dssp HHHHHHHHHGG-GCCE-EHHHHHTTSSSCHHHHHHHHHHHHHTTSEEEEE---E---TTE-EEEEECHH
T ss_pred HHHHHHHHHHH-hCCC-CHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEe---c---CCE-EEEEEChH
Confidence 44467888887 5677 999999999999999999999999999997542 1 222 45667754
No 274
>2p5k_A Arginine repressor; DNA-binding domain, winged helix-turn-helix (WHTH), DNA binding protein; 1.00A {Bacillus subtilis} SCOP: a.4.5.3 PDB: 2p5l_C*
Probab=55.54 E-value=34 Score=23.99 Aligned_cols=38 Identities=11% Similarity=0.157 Sum_probs=31.0
Q ss_pred HHHHHHhcCCCcHHHHHHhc-----CCCHHHHHHHHHHHHhccccc
Q 010353 25 VCECLLRKGPLTRQNVKRYT-----ELSDEQVKNALLVLIQQNCVQ 65 (512)
Q Consensus 25 V~~~Ll~~G~ltl~~I~~~t-----~l~~~~Vr~aL~vLIQhn~V~ 65 (512)
|...|-.+|.+|..+|.... +++...|+..|- ..|++.
T Consensus 10 i~~ll~~~~~~t~~el~~~l~~~~~~vs~~Tv~R~L~---~lg~v~ 52 (64)
T 2p5k_A 10 IREIITSNEIETQDELVDMLKQDGYKVTQATVSRDIK---ELHLVK 52 (64)
T ss_dssp HHHHHHHSCCCSHHHHHHHHHHTTCCCCHHHHHHHHH---HHTCEE
T ss_pred HHHHHHcCCCCCHHHHHHHHHHhCCCcCHHHHHHHHH---HcCCEE
Confidence 44455567899999999888 999999999998 668773
No 275
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=55.49 E-value=27 Score=29.06 Aligned_cols=47 Identities=15% Similarity=0.096 Sum_probs=38.8
Q ss_pred HHHHHHHHhc-CCCcHHHHHHhc-----CCCHHHHHHHHHHHHhccccceecc
Q 010353 23 AKVCECLLRK-GPLTRQNVKRYT-----ELSDEQVKNALLVLIQQNCVQAFTT 69 (512)
Q Consensus 23 ~~V~~~Ll~~-G~ltl~~I~~~t-----~l~~~~Vr~aL~vLIQhn~V~~~~~ 69 (512)
..|.++|... +.+|..+|.... +++...|-..|-.|.+.|+|.-...
T Consensus 14 ~~Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv~~~~~ 66 (131)
T 2o03_A 14 AAISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGLVDTLHT 66 (131)
T ss_dssp HHHHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTSEEEEEC
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCEEEEEe
Confidence 3577778765 589999998775 7999999999999999999984443
No 276
>4esf_A PADR-like transcriptional regulator; PADR family, DNA binding protein, HTH fold; 2.20A {Bacillus cereus}
Probab=54.60 E-value=35 Score=27.90 Aligned_cols=67 Identities=18% Similarity=0.155 Sum_probs=45.9
Q ss_pred chhHHHHHHHHHhcCCCcHHHHHHhc------CCCHHHHHHHHHHHHhccccceecccCCCCCCCCCCCccEEEechhh
Q 010353 19 GDLVAKVCECLLRKGPLTRQNVKRYT------ELSDEQVKNALLVLIQQNCVQAFTTEQPDGFADGPKANTQYVVLFDN 91 (512)
Q Consensus 19 G~~v~~V~~~Ll~~G~ltl~~I~~~t------~l~~~~Vr~aL~vLIQhn~V~~~~~~~~~~~~~~~~~~~~Y~~~~~~ 91 (512)
|.+--.|-..| ..|+.+-.+|.+.. ++++..|-.+|-.|.+.|+|.......+++ +...+|++-..+
T Consensus 10 g~l~~~IL~lL-~~~p~~Gyei~~~l~~~g~~~is~gtlY~~L~rLe~~GlI~~~~~~~~~g-----~~rk~Y~LT~~G 82 (117)
T 4esf_A 10 GSLEGCVLEII-SRRETYGYEITRHLNDLGFTEVVEGTVYTILVRLEKKKLVNIEKKPSDMG-----PPRKFYSLNEAG 82 (117)
T ss_dssp HHHHHHHHHHH-HHSCBCHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHTTCEEEEEEC----------CEEEEEECHHH
T ss_pred ChHHHHHHHHH-HcCCCCHHHHHHHHHHcCCCCCCccHHHHHHHHHHHCCCEEEEeecCCCC-----CCceEEEECHHH
Confidence 44444455544 46888888888775 799999999999999999998544322221 235789888665
No 277
>3o2p_E Cell division control protein 53; ligase, cell cycle; 2.23A {Saccharomyces cerevisiae} PDB: 3o6b_B
Probab=54.56 E-value=39 Score=26.32 Aligned_cols=57 Identities=9% Similarity=0.132 Sum_probs=44.7
Q ss_pred hhHHHHHHHHHHcccCCHHHHHHHHhhcccCCCccCHHHHHHHHHHHHhcccccccC
Q 010353 111 QQCVELVQGLLEHGRLTLKQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCP 167 (512)
Q Consensus 111 ~~a~~Iv~~lL~~G~l~~~~li~~~~~~~~~~~~~~~~~l~~~f~~Lv~~~fi~rv~ 167 (512)
..-+.||...=....++-.+|+..+.+....--..+...++..+..|++.+||.|.+
T Consensus 23 ~iqAaIVRIMK~rK~l~h~~Lv~ev~~ql~~rF~p~~~~IKk~IE~LIekeYleR~~ 79 (88)
T 3o2p_E 23 FLEACIVRIMKAKRNLPHTTLVNECIAQSHQRFNAKVSMVKRAIDSLIQKGYLQRGD 79 (88)
T ss_dssp HHHHHHHHHHHHHSEEEHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHTTSEEECT
T ss_pred hhheeeehhhcccccccHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhhhHHhcCC
Confidence 446778888888889998888887765433222347889999999999999999985
No 278
>2fsw_A PG_0823 protein; alpha-beta structure, helix-turn-helix, winged-helix-turn-HE structural genomics, PSI, protein structure initiative; HET: MSE; 2.16A {Porphyromonas gingivalis} SCOP: a.4.5.69
Probab=54.47 E-value=37 Score=26.94 Aligned_cols=50 Identities=12% Similarity=0.086 Sum_probs=41.2
Q ss_pred CchHHHHHHHHHhcCCCcchhhhhhhcC-CCcccHHHHHHHHhhcccceEEEE
Q 010353 369 GRDAYRIFRLLSKSGRLLETDKISDTTF-VEKKDAPKILYKLWKDGYLLMEKL 420 (512)
Q Consensus 369 G~~~~Ri~r~l~~~~~l~eek~i~~~am-i~~k~~r~~Ly~L~~~g~v~~QEv 420 (512)
+.-...|+..|. +|.+ ...+|++... ++...+-..|.+|.+.|+|.-...
T Consensus 24 ~~~~~~IL~~L~-~~~~-~~~eL~~~l~gis~~~ls~~L~~Le~~GlV~r~~~ 74 (107)
T 2fsw_A 24 GKWTLLIIFQIN-RRII-RYGELKRAIPGISEKMLIDELKFLCGKGLIKKKQY 74 (107)
T ss_dssp SSSHHHHHHHHT-TSCE-EHHHHHHHSTTCCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred CccHHHHHHHHH-hCCc-CHHHHHHHcccCCHHHHHHHHHHHHHCCCEEEeec
Confidence 344467888886 6777 9999999995 999999999999999999975433
No 279
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=54.39 E-value=18 Score=28.14 Aligned_cols=46 Identities=7% Similarity=-0.068 Sum_probs=37.4
Q ss_pred chhHHHHHHHHHh-cCC---CcHHHHHHhcCCCHHHHHHHHHHHHhcccc
Q 010353 19 GDLVAKVCECLLR-KGP---LTRQNVKRYTELSDEQVKNALLVLIQQNCV 64 (512)
Q Consensus 19 G~~v~~V~~~Ll~-~G~---ltl~~I~~~t~l~~~~Vr~aL~vLIQhn~V 64 (512)
.+-.-.|..+|+. .|+ +|..+|++.++++++.|-..|-.|.+.|+|
T Consensus 11 ~~~~~~iL~~l~~~~~~~~~~t~~eLa~~l~i~~~tvs~~l~~Le~~Glv 60 (95)
T 2qvo_A 11 KEKALEILMTIYYESLGGNDVYIQYIASKVNSPHSYVWLIIKKFEEAKMV 60 (95)
T ss_dssp CHHHHHHHHHHHHHHHTTCCEEHHHHHHHSSSCHHHHHHHHHHHHHTTSE
T ss_pred chhHHHHHHHHHHccCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCcCc
Confidence 3444445555554 345 899999999999999999999999999999
No 280
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=54.29 E-value=34 Score=28.61 Aligned_cols=49 Identities=12% Similarity=0.044 Sum_probs=40.2
Q ss_pred hhHHHHHHHHHhc--CCCcHHHHHHhc-----CCCHHHHHHHHHHHHhccccceec
Q 010353 20 DLVAKVCECLLRK--GPLTRQNVKRYT-----ELSDEQVKNALLVLIQQNCVQAFT 68 (512)
Q Consensus 20 ~~v~~V~~~Ll~~--G~ltl~~I~~~t-----~l~~~~Vr~aL~vLIQhn~V~~~~ 68 (512)
+-=..|..+|... +.+|..+|.... ++++..|-..|-.|.+.|+|.-..
T Consensus 18 ~qR~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~~ 73 (136)
T 1mzb_A 18 LPRVKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLVVRHN 73 (136)
T ss_dssp HHHHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEEEEC
T ss_pred HHHHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcEEEEE
Confidence 3345688888865 589999998775 799999999999999999998444
No 281
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=54.25 E-value=13 Score=31.90 Aligned_cols=54 Identities=11% Similarity=0.196 Sum_probs=42.8
Q ss_pred hhHHHHHHHHHHc--ccCCHHHHHHHHhhcccCCCccCHHHHHHHHHHHHhcccccccC
Q 010353 111 QQCVELVQGLLEH--GRLTLKQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCP 167 (512)
Q Consensus 111 ~~a~~Iv~~lL~~--G~l~~~~li~~~~~~~~~~~~~~~~~l~~~f~~Lv~~~fi~rv~ 167 (512)
..=..|++.|..+ +++|+.+|.+.+....+ ..+...|-.++..|++.|+|.++.
T Consensus 17 ~qR~~Il~~L~~~~~~h~sa~ei~~~l~~~~~---~is~aTVYR~L~~L~e~Glv~~~~ 72 (150)
T 2w57_A 17 LPRLKILEVLQQPECQHISAEELYKKLIDLGE---EIGLATVYRVLNQFDDAGIVTRHH 72 (150)
T ss_dssp HHHHHHHHHHTSGGGSSEEHHHHHHHHHHTTC---CCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHHhCCCCCCCHHHHHHHHHHhCC---CCCHHHHHHHHHHHHHCCcEEEEE
Confidence 4445677777665 68999999999865432 357889999999999999999984
No 282
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=54.18 E-value=25 Score=29.88 Aligned_cols=47 Identities=15% Similarity=0.015 Sum_probs=38.5
Q ss_pred HHHHHHHHhcCCCcHHHHHHhc-----CCCHHHHHHHHHHHHhccccceecc
Q 010353 23 AKVCECLLRKGPLTRQNVKRYT-----ELSDEQVKNALLVLIQQNCVQAFTT 69 (512)
Q Consensus 23 ~~V~~~Ll~~G~ltl~~I~~~t-----~l~~~~Vr~aL~vLIQhn~V~~~~~ 69 (512)
..|..+|...+.+|..+|.... ++++..|-.+|-.|.+.|+|.-...
T Consensus 22 ~~Il~~l~~~~h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv~~i~~ 73 (145)
T 3eyy_A 22 QLVLEAVDTLEHATPDDILGEVRKTASGINISTVYRTLELLEELGLVSHAHL 73 (145)
T ss_dssp HHHHHHHHHHSSBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTSEEEEEC
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCcEEEEEe
Confidence 4577888887888888887653 6899999999999999999985443
No 283
>3hhh_A Transcriptional regulator, PADR family; PF03551, structural PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 2.70A {Enterococcus faecalis} SCOP: a.4.5.0
Probab=53.38 E-value=79 Score=25.64 Aligned_cols=67 Identities=18% Similarity=0.168 Sum_probs=46.8
Q ss_pred chhHHHHHHHHHhcCCCcHHHHHHhc------CCCHHHHHHHHHHHHhccccceecccCCCCCCCCCCCccEEEechhh
Q 010353 19 GDLVAKVCECLLRKGPLTRQNVKRYT------ELSDEQVKNALLVLIQQNCVQAFTTEQPDGFADGPKANTQYVVLFDN 91 (512)
Q Consensus 19 G~~v~~V~~~Ll~~G~ltl~~I~~~t------~l~~~~Vr~aL~vLIQhn~V~~~~~~~~~~~~~~~~~~~~Y~~~~~~ 91 (512)
|.+-..|-..| ..|+.+-.+|.+.. ++++..|-.+|-.|.+.|+|.....+.+++ +...+|++-..+
T Consensus 12 g~l~~~IL~lL-~~~p~~Gyei~~~l~~~g~~~is~gtlY~~L~rLe~~GlI~~~~~~~~~g-----~~rk~Y~lT~~G 84 (116)
T 3hhh_A 12 GILEGLVLAII-QRKETYGYEITKILNDQGFTEIVEGTVYTILLRLEKNQWVIAEKKPSEKG-----PMRKFYRLTSSG 84 (116)
T ss_dssp THHHHHHHHHH-HHSCBCHHHHHHHHHTTSCSSCCHHHHHHHHHHHHHTTSEEEEEEECC-------CEEEEEEECHHH
T ss_pred hhHHHHHHHHH-hcCCCCHHHHHHHHHHcCCCCCCccHHHHHHHHHHHCCCEEEEeeecCCC-----CCceEEEECHHH
Confidence 33444444444 57888888998875 689999999999999999998543322222 235688888665
No 284
>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A
Probab=53.13 E-value=25 Score=28.90 Aligned_cols=61 Identities=13% Similarity=0.201 Sum_probs=46.7
Q ss_pred chHHHHHHHHHhcCCCcchhhhhhhcCCCcccHHHHHHHHhhcccceEEEEecCCCCCceEEEEEEehHH
Q 010353 370 RDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTGARQSQFLLWKVNRQI 439 (512)
Q Consensus 370 ~~~~Ri~r~l~~~~~l~eek~i~~~ami~~k~~r~~Ly~L~~~g~v~~QEvpk~~~~~~t~~lw~v~~~~ 439 (512)
..-.+|+..|.. |.+ .-.+|++...++...+...|..|.+.|+|..... ++.. +|+++.+.
T Consensus 46 ~~rl~IL~~L~~-~~~-s~~ela~~lgis~stvs~~L~~Le~~Glv~~~~~------gr~~-~y~l~~~~ 106 (122)
T 1r1t_A 46 PNRLRLLSLLAR-SEL-CVGDLAQAIGVSESAVSHQLRSLRNLRLVSYRKQ------GRHV-YYQLQDHH 106 (122)
T ss_dssp HHHHHHHHHHTT-CCB-CHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEE------TTEE-EEEESSHH
T ss_pred HHHHHHHHHHHc-CCC-CHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEe------CCEE-EEEEChHH
Confidence 334678888864 677 8999999999999999999999999999966431 2333 46666554
No 285
>1uly_A Hypothetical protein PH1932; helix-turn-helix, structural genomics, DNA binding protein; 2.50A {Pyrococcus horikoshii} SCOP: a.4.5.58 PDB: 2cwe_A
Probab=52.24 E-value=15 Score=33.09 Aligned_cols=49 Identities=14% Similarity=0.188 Sum_probs=43.1
Q ss_pred hCchHHHHHHHHHhcCCCcchhhhhhhcCCCcccHHHHHHHHhhcccceEE
Q 010353 368 YGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLME 418 (512)
Q Consensus 368 ~G~~~~Ri~r~l~~~~~l~eek~i~~~ami~~k~~r~~Ly~L~~~g~v~~Q 418 (512)
....-.+|+++|. +|.+ ...+|++...++...++..+.+|.+.|+|.-.
T Consensus 18 ~d~~~~~IL~~L~-~~~~-s~~eLA~~lglS~stv~~~l~~Le~~GlI~~~ 66 (192)
T 1uly_A 18 LEDTRRKILKLLR-NKEM-TISQLSEILGKTPQTIYHHIEKLKEAGLVEVK 66 (192)
T ss_dssp HSHHHHHHHHHHT-TCCB-CHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCHHHHHHHHHHH-cCCC-CHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 3445568999987 6777 99999999999999999999999999999776
No 286
>2fbk_A Transcriptional regulator, MARR family; winged-helix-turn-helix; 2.30A {Deinococcus radiodurans} SCOP: a.4.5.28
Probab=52.19 E-value=45 Score=28.95 Aligned_cols=48 Identities=15% Similarity=0.226 Sum_probs=41.7
Q ss_pred hhHHHHHHHHHhcCC---CcHHHHHHhcCCCHHHHHHHHHHHHhcccccee
Q 010353 20 DLVAKVCECLLRKGP---LTRQNVKRYTELSDEQVKNALLVLIQQNCVQAF 67 (512)
Q Consensus 20 ~~v~~V~~~Ll~~G~---ltl~~I~~~t~l~~~~Vr~aL~vLIQhn~V~~~ 67 (512)
+.--.|..+|..+|+ +|..+|++.++++++.|-..|-.|.+.|+|.-.
T Consensus 69 ~~~~~iL~~L~~~~~~~~~t~~eLa~~l~is~~tvs~~l~~Le~~GlV~r~ 119 (181)
T 2fbk_A 69 AAGWDLLLTLYRSAPPEGLRPTELSALAAISGPSTSNRIVRLLEKGLIERR 119 (181)
T ss_dssp HHHHHHHHHHHHHCCSSCBCHHHHHHHCSCCSGGGSSHHHHHHHHTSEECC
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCcCEEec
Confidence 444567788888875 999999999999999999999999999999843
No 287
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=51.20 E-value=36 Score=29.09 Aligned_cols=48 Identities=21% Similarity=0.234 Sum_probs=39.9
Q ss_pred HHHHHHHHHhc-CCCcHHHHHHhc-----CCCHHHHHHHHHHHHhccccceecc
Q 010353 22 VAKVCECLLRK-GPLTRQNVKRYT-----ELSDEQVKNALLVLIQQNCVQAFTT 69 (512)
Q Consensus 22 v~~V~~~Ll~~-G~ltl~~I~~~t-----~l~~~~Vr~aL~vLIQhn~V~~~~~ 69 (512)
=..|..+|... +.+|..+|.... ++++..|-..|-.|.+.|+|.-...
T Consensus 29 R~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~~~ 82 (150)
T 2xig_A 29 REEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFISVLET 82 (150)
T ss_dssp HHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcEEEEEe
Confidence 34688888875 689999998775 7999999999999999999984443
No 288
>1yg2_A Gene activator APHA; virulence factor, winged helix, transcripti factor, transcription; 2.20A {Vibrio cholerae} SCOP: a.4.5.61
Probab=50.66 E-value=21 Score=31.53 Aligned_cols=61 Identities=16% Similarity=0.114 Sum_probs=41.7
Q ss_pred HHHHHHhcCCCcHHHHHHhc--------CCCHHHHHHHHHHHHhccccceecccCCCCCCCCCCCccEEEechhh
Q 010353 25 VCECLLRKGPLTRQNVKRYT--------ELSDEQVKNALLVLIQQNCVQAFTTEQPDGFADGPKANTQYVVLFDN 91 (512)
Q Consensus 25 V~~~Ll~~G~ltl~~I~~~t--------~l~~~~Vr~aL~vLIQhn~V~~~~~~~~~~~~~~~~~~~~Y~~~~~~ 91 (512)
|-..|. .|+.+-.+|.+.. ++++.+|...|-.|.+.|+|.....+.+++ +...+|++-..+
T Consensus 7 iL~lL~-~~~~~gyel~~~l~~~~~~~~~~s~~~ly~~L~~Le~~GlI~~~~~~~~~~-----~~r~~Y~lT~~G 75 (179)
T 1yg2_A 7 ILTVLS-TRDATGYDITKEFSASIGYFWKASHQQVYRELNKMGEQGLVTCVLEPQEGK-----PDRKVYSITQAG 75 (179)
T ss_dssp HHHHHH-HCCBCHHHHHHHHTTGGGGTCCCCHHHHHHHHHHHHHTTSEEECCC--------------CEEECHHH
T ss_pred HHHHHh-cCCCCHHHHHHHHHHHhCCccCCCcCcHHHHHHHHHHCCCeEEEeecCCCC-----CCceEEEeChHH
Confidence 445554 5899999998876 699999999999999999998433322121 224678887665
No 289
>1ylf_A RRF2 family protein; structural genomics, transcription regulator, P protein structure initiative; 2.50A {Bacillus cereus atcc 14579} SCOP: a.4.5.55
Probab=50.37 E-value=20 Score=30.68 Aligned_cols=43 Identities=12% Similarity=0.074 Sum_probs=35.5
Q ss_pred HHHHHHHHh--cCCCcHHHHHHhcCCCHHHHHHHHHHHHhccccc
Q 010353 23 AKVCECLLR--KGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQ 65 (512)
Q Consensus 23 ~~V~~~Ll~--~G~ltl~~I~~~t~l~~~~Vr~aL~vLIQhn~V~ 65 (512)
=++.-+|.. .++.|..+|+...++|++.|++.|..|.+.|+|.
T Consensus 17 l~~L~~La~~~~~~~~~~~iA~~~~i~~~~l~kil~~L~~~Glv~ 61 (149)
T 1ylf_A 17 VHILSILKNNPSSLCTSDYMAESVNTNPVVIRKIMSYLKQAGFVY 61 (149)
T ss_dssp HHHHHHHHHSCGGGCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHhCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEE
Confidence 333444443 3478999999999999999999999999999997
No 290
>3neu_A LIN1836 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; 1.58A {Listeria innocua}
Probab=49.99 E-value=59 Score=26.67 Aligned_cols=32 Identities=13% Similarity=0.091 Sum_probs=29.7
Q ss_pred CCc-HHHHHHhcCCCHHHHHHHHHHHHhccccc
Q 010353 34 PLT-RQNVKRYTELSDEQVKNALLVLIQQNCVQ 65 (512)
Q Consensus 34 ~lt-l~~I~~~t~l~~~~Vr~aL~vLIQhn~V~ 65 (512)
++| ..+|+...+++...||.||..|.+.|+|.
T Consensus 36 ~Lps~~~La~~~~vSr~tvr~Al~~L~~~G~i~ 68 (125)
T 3neu_A 36 KLPSVREMGVKLAVNPNTVSRAYQELERAGYIY 68 (125)
T ss_dssp BCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCeEE
Confidence 454 89999999999999999999999999997
No 291
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=49.97 E-value=60 Score=28.51 Aligned_cols=62 Identities=11% Similarity=0.104 Sum_probs=49.1
Q ss_pred hCchHHHHHHHHHh--cCCCcchhhhhhhcCCCcccHHHHHHHHhhcccceEEEEecCCCCCceEEEE
Q 010353 368 YGRDAYRIFRLLSK--SGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTGARQSQFLLW 433 (512)
Q Consensus 368 ~G~~~~Ri~r~l~~--~~~l~eek~i~~~ami~~k~~r~~Ly~L~~~g~v~~QEvpk~~~~~~t~~lw 433 (512)
+...-++|+..|.. .|.+ ...+|++...++...+-.++.+|.+.|||.-+.-|. ..|..++.
T Consensus 39 lt~~q~~vL~~L~~~~~~~~-t~~eLa~~l~is~~tvs~~l~~Le~~GlV~r~~~~~---DrR~~~l~ 102 (189)
T 3nqo_A 39 LTSRQYMTILSILHLPEEET-TLNNIARKMGTSKQNINRLVANLEKNGYVDVIPSPH---DKRAINVK 102 (189)
T ss_dssp SCHHHHHHHHHHHHSCGGGC-CHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEECSS---CSSCEEEE
T ss_pred CCHHHHHHHHHHHhccCCCc-CHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeccCCC---CCCeeEEE
Confidence 56667788888876 5567 999999999999999999999999999996654443 34555544
No 292
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=49.52 E-value=31 Score=29.09 Aligned_cols=34 Identities=21% Similarity=0.144 Sum_probs=31.5
Q ss_pred CCCcHHHHHHhcCCCHHHHHHHHHHHHhccccce
Q 010353 33 GPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQA 66 (512)
Q Consensus 33 G~ltl~~I~~~t~l~~~~Vr~aL~vLIQhn~V~~ 66 (512)
...|..+|+..++++++.|-..|-.|++.|++.-
T Consensus 50 ~~ps~~~LA~~~~~s~~~v~~~L~~L~~KGlI~i 83 (135)
T 2v79_A 50 YFPTPNQLQEGMSISVEECTNRLRMFIQKGFLFI 83 (135)
T ss_dssp CSCCHHHHHTTSSSCHHHHHHHHHHHHHHTSCEE
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEE
Confidence 4569999999999999999999999999999984
No 293
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=49.02 E-value=28 Score=30.93 Aligned_cols=55 Identities=16% Similarity=0.190 Sum_probs=47.4
Q ss_pred HHHHHhhhchhHHHHHHHHHhc----C----CCcHHHHHHhcCCCHHHHHHHHHHHHhccccc
Q 010353 11 VHVITNHFGDLVAKVCECLLRK----G----PLTRQNVKRYTELSDEQVKNALLVLIQQNCVQ 65 (512)
Q Consensus 11 ~~iv~~~FG~~v~~V~~~Ll~~----G----~ltl~~I~~~t~l~~~~Vr~aL~vLIQhn~V~ 65 (512)
..+..-.+.+.-.+++..|+.. | ++|..+|+...|+++..|-..|--|.+.|++.
T Consensus 138 ~~~~~~~~~~~~~Rl~~~L~~~~~~~~~~~~~~t~~~lA~~lg~sr~tvsR~l~~L~~~g~I~ 200 (220)
T 3dv8_A 138 WLIEQIMWKSLDKRVASFLLEETSIEGTNELKITHETIANHLGSHREVITRMLRYFQVEGLVK 200 (220)
T ss_dssp HHHHHHHHSCHHHHHHHHHHHHHHHHTSSEECCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHhcCCHHHHHHHHHHHhhhhcCCceecCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEE
Confidence 3444456788889999999874 3 78999999999999999999999999999997
No 294
>4esb_A Transcriptional regulator, PADR family; DNA binding protein, HTH fold; 2.50A {Bacillus cereus}
Probab=48.97 E-value=34 Score=27.80 Aligned_cols=67 Identities=10% Similarity=0.081 Sum_probs=47.1
Q ss_pred chhHHHHHHHHHhcCCCcHHHHHHhc------CCCHHHHHHHHHHHHhccccceecccCCCCCCCCCCCccEEEechhh
Q 010353 19 GDLVAKVCECLLRKGPLTRQNVKRYT------ELSDEQVKNALLVLIQQNCVQAFTTEQPDGFADGPKANTQYVVLFDN 91 (512)
Q Consensus 19 G~~v~~V~~~Ll~~G~ltl~~I~~~t------~l~~~~Vr~aL~vLIQhn~V~~~~~~~~~~~~~~~~~~~~Y~~~~~~ 91 (512)
|.+--.|-..|. .|+.+-.+|.+.. ++++..|-.+|-.|.+.|+|.......+++ +...+|++-..+
T Consensus 8 g~l~~~IL~~L~-~~~~~Gyei~~~l~~~~~~~is~gtlY~~L~rLe~~GlI~~~~~~~~~g-----~~rk~Y~LT~~G 80 (115)
T 4esb_A 8 GVLEGCILYIIS-QEEVYGYELSTKLNKHGFTFVSEGSIYPLLLRMQKEKLIEGTLKASSLG-----PKRKYYHITDKG 80 (115)
T ss_dssp TTHHHHHHHHHH-HSCEEHHHHHHHHHHTTCTTCCHHHHHHHHHHHHHTTSEEEEEEECTTS-----CEEEEEEECHHH
T ss_pred CHHHHHHHHHHH-cCCCCHHHHHHHHHHcCCCCCCcChHHHHHHHHHHCCCeEEEeeecCCC-----CCcEEEEECHHH
Confidence 444445555554 6888888887775 589999999999999999998443322222 335688888665
No 295
>2b0l_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, winged HTH motif.; 2.90A {Bacillus subtilis} SCOP: a.4.5.66
Probab=48.73 E-value=6.6 Score=31.56 Aligned_cols=44 Identities=16% Similarity=0.192 Sum_probs=34.9
Q ss_pred HHHHHHHHHhcCCC-cHHHHHHhcCCCHHHHHHHHHHHHhccccc
Q 010353 22 VAKVCECLLRKGPL-TRQNVKRYTELSDEQVKNALLVLIQQNCVQ 65 (512)
Q Consensus 22 v~~V~~~Ll~~G~l-tl~~I~~~t~l~~~~Vr~aL~vLIQhn~V~ 65 (512)
-..|...|-..+++ +..+|++..+++...|+.+|-.|.+.|+|.
T Consensus 30 ~~~I~~~l~~g~~lps~~eLa~~lgVSr~tVr~al~~L~~~GlI~ 74 (102)
T 2b0l_A 30 IEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIE 74 (102)
T ss_dssp HHHHTTSSBTTEEEECHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHhhhcCCCcCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEE
Confidence 44444222223456 899999999999999999999999999997
No 296
>1xd7_A YWNA; structural genomics, protein structure initiative, winged HE binding, hypothetical protein, PSI; 2.30A {Bacillus subtilis subsp} SCOP: a.4.5.55
Probab=48.40 E-value=37 Score=28.77 Aligned_cols=46 Identities=4% Similarity=0.055 Sum_probs=37.1
Q ss_pred chhHHHHHHHHHhc-CCCcHHHHHHhcCCCHHHHHHHHHHHHhccccc
Q 010353 19 GDLVAKVCECLLRK-GPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQ 65 (512)
Q Consensus 19 G~~v~~V~~~Ll~~-G~ltl~~I~~~t~l~~~~Vr~aL~vLIQhn~V~ 65 (512)
++.+=.+.-+|..+ |+ |..+|+...++|++-+++.|..|.+.|+|.
T Consensus 8 ~~yAl~~L~~La~~~~~-s~~~IA~~~~i~~~~l~kIl~~L~~aGlv~ 54 (145)
T 1xd7_A 8 LAVAIHILSLISMDEKT-SSEIIADSVNTNPVVVRRMISLLKKADILT 54 (145)
T ss_dssp HHHHHHHHHHHHTCSCC-CHHHHHHHHTSCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHHhCCCC-CHHHHHHHHCcCHHHHHHHHHHHHHCCceE
Confidence 33444455555543 45 999999999999999999999999999997
No 297
>1bja_A Transcription regulatory protein MOTA; activation domain, middle mode transcription, alpha helical structure, transcription regulation; 2.19A {Enterobacteria phage T4} SCOP: a.4.5.9 PDB: 1i1s_A
Probab=48.21 E-value=35 Score=27.03 Aligned_cols=49 Identities=8% Similarity=0.115 Sum_probs=41.2
Q ss_pred Hhh--hhHHHHHHHHHHcccCCHHHHHH-HHhhcccCCCccCHHHHHHHHHHHHhccccc
Q 010353 108 EFD--QQCVELVQGLLEHGRLTLKQMFD-RAKSSEKEGNLVDLDSLRETLVKLVTAHYVE 164 (512)
Q Consensus 108 ~~G--~~a~~Iv~~lL~~G~l~~~~li~-~~~~~~~~~~~~~~~~l~~~f~~Lv~~~fi~ 164 (512)
.+| .....|+-.|-.+|..|+.++.+ ... .+++.+...+.-|.++|||.
T Consensus 11 ~~~L~~~QfsiL~~L~~~~~~t~~~Lae~~l~--------~drstvsrnl~~L~r~GlVe 62 (95)
T 1bja_A 11 NDVLNEKTATILITIAKKDFITAAEVREVHPD--------LGNAVVNSNIGVLIKKGLVE 62 (95)
T ss_dssp TTSSCHHHHHHHHHHHHSTTBCHHHHHHTCTT--------SCHHHHHHHHHHHHTTTSEE
T ss_pred hcCCCHHHHHHHHHHHHCCCCCHHHHHHHHhc--------ccHHHHHHHHHHHHHCCCee
Confidence 466 66888999999999999999988 421 25778999999999999998
No 298
>2nr3_A Hypothetical protein; APC84902, conserved domain, pseudomonas syringae PV. tomato STR. DC3000, structural genomics, PSI-2; 2.21A {Pseudomonas syringae PV} PDB: 3bz6_A
Probab=48.06 E-value=26 Score=30.97 Aligned_cols=49 Identities=22% Similarity=0.240 Sum_probs=41.3
Q ss_pred hhchhHHHHHHHHHhcCCCcHHHHHHhcC----C-CHHHHHHHHHHHHhccccc
Q 010353 17 HFGDLVAKVCECLLRKGPLTRQNVKRYTE----L-SDEQVKNALLVLIQQNCVQ 65 (512)
Q Consensus 17 ~FG~~v~~V~~~Ll~~G~ltl~~I~~~t~----l-~~~~Vr~aL~vLIQhn~V~ 65 (512)
.|.+--..|...|+-||++|..+|..+++ + +...|...|--|+++.+|.
T Consensus 105 ~l~~~e~All~~LlLRGpQT~gELRtRs~Rl~~F~d~~~Ve~~L~~L~~r~lV~ 158 (183)
T 2nr3_A 105 ELVPAQVILTGLLLLRGPQTVSELLTRSNRMHDFEDSEQVVHQLERLIARGLAT 158 (183)
T ss_dssp TCCHHHHHHHHHHHHHCSEEHHHHHHHTTTTSCCSSHHHHHHHHHHHHHTTSEE
T ss_pred CCCHHHHHHHHHHHhcCCCChHHHHHhhhcCCcCCCHHHHHHHHHHHhhCcHHH
Confidence 45566677888999999999999977754 3 6789999999999998886
No 299
>2o0y_A Transcriptional regulator; ICLR-family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.00A {Rhodococcus SP}
Probab=47.79 E-value=11 Score=35.73 Aligned_cols=45 Identities=13% Similarity=0.137 Sum_probs=37.5
Q ss_pred hHHHHHHHH---H-hcCCCcHHHHHHhcCCCHHHHHHHHHHHHhccccc
Q 010353 21 LVAKVCECL---L-RKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQ 65 (512)
Q Consensus 21 ~v~~V~~~L---l-~~G~ltl~~I~~~t~l~~~~Vr~aL~vLIQhn~V~ 65 (512)
.+.+...+| . ..+++|+.+|++.++++.+.|..-|-.|.++|+|.
T Consensus 21 sl~r~l~iL~~l~~~~~~~~~~eia~~~gl~kstv~r~l~tL~~~G~v~ 69 (260)
T 2o0y_A 21 SVTRVIDLLELFDAAHPTRSLKELVEGTKLPKTTVVRLVATMCARSVLT 69 (260)
T ss_dssp HHHHHHHHHTTCBTTBSSBCHHHHHHHHCCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHHhhCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEE
Confidence 344555554 2 24789999999999999999999999999999997
No 300
>1iuy_A Cullin-3 homologue; winged helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.4.5.34
Probab=47.62 E-value=35 Score=26.81 Aligned_cols=55 Identities=13% Similarity=0.211 Sum_probs=40.9
Q ss_pred HHHHHHHHHHcccCCHHHHHHHHhhcccCCCccCHHHHHHHHHHHHhcccccccC
Q 010353 113 CVELVQGLLEHGRLTLKQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCP 167 (512)
Q Consensus 113 a~~Iv~~lL~~G~l~~~~li~~~~~~~~~~~~~~~~~l~~~f~~Lv~~~fi~rv~ 167 (512)
-+.||...=....++-.+|+..+.+....--..+...++..+..|++.+||.|.+
T Consensus 28 ~AaIVRIMK~rK~l~h~~Lv~ev~~ql~~rF~p~~~~IKk~IE~LIereYleR~~ 82 (92)
T 1iuy_A 28 EAAIVRIMKSRKKMQHNVLVAEVTQQLKARFLPSPVVIKKRIEGLIEREYLARTP 82 (92)
T ss_dssp HHHHHHHHHHHCEEEHHHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHTTSEEECS
T ss_pred eeeeeehhhccccccHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhhhhhhhcCC
Confidence 4566666667778887888877765432212247889999999999999999985
No 301
>2obp_A Putative DNA-binding protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.70A {Ralstonia eutropha} SCOP: a.4.5.71
Probab=47.26 E-value=31 Score=27.36 Aligned_cols=34 Identities=12% Similarity=0.193 Sum_probs=32.8
Q ss_pred CCCcHHHHHHhcCCCHHHHHHHHHHHHhccccce
Q 010353 33 GPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQA 66 (512)
Q Consensus 33 G~ltl~~I~~~t~l~~~~Vr~aL~vLIQhn~V~~ 66 (512)
|++++.+|...+.++.+.+...|-.|.+.|+|.-
T Consensus 35 ~~~s~~eLa~~l~l~~stLsR~l~rLe~~GLV~r 68 (96)
T 2obp_A 35 TPWSLPKIAKRAQLPMSVLRRVLTQLQAAGLADV 68 (96)
T ss_dssp CCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred CCcCHHHHHHHhCCchhhHHHHHHHHHHCCCEEe
Confidence 8899999999999999999999999999999984
No 302
>2g7u_A Transcriptional regulator; ICLR family, structural genomics, PSI, protein structure initiative, midwest center for struc genomics; 2.30A {Rhodococcus SP}
Probab=47.25 E-value=13 Score=35.03 Aligned_cols=35 Identities=23% Similarity=0.208 Sum_probs=32.6
Q ss_pred cCCCcHHHHHHhcCCCHHHHHHHHHHHHhccccce
Q 010353 32 KGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQA 66 (512)
Q Consensus 32 ~G~ltl~~I~~~t~l~~~~Vr~aL~vLIQhn~V~~ 66 (512)
.+++|+.+|++.++++.+.|..-|-.|.++|+|..
T Consensus 27 ~~~~~~~eia~~~gl~~stv~r~l~~L~~~G~v~~ 61 (257)
T 2g7u_A 27 RPNPTLAELATEAGLSRPAVRRILLTLQKLGYVAG 61 (257)
T ss_dssp CSSCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred CCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEe
Confidence 36799999999999999999999999999999973
No 303
>3bz6_A UPF0502 protein pspto_2686; APC84902, conserved domain, pseudomonas syringae PV. tomato DC3000, structural genomics, PSI-2; 2.21A {Pseudomonas syringae PV} SCOP: a.4.5.75 a.4.5.75
Probab=46.58 E-value=31 Score=30.53 Aligned_cols=49 Identities=22% Similarity=0.240 Sum_probs=40.5
Q ss_pred hhchhHHHHHHHHHhcCCCcHHHHHHhcC----C-CHHHHHHHHHHHHhccccc
Q 010353 17 HFGDLVAKVCECLLRKGPLTRQNVKRYTE----L-SDEQVKNALLVLIQQNCVQ 65 (512)
Q Consensus 17 ~FG~~v~~V~~~Ll~~G~ltl~~I~~~t~----l-~~~~Vr~aL~vLIQhn~V~ 65 (512)
.|-+--..|...|+-||++|..+|..+++ + +...|...|--|+++.+|.
T Consensus 105 ~l~~~e~All~~LlLRGpQT~GELRtRs~Rl~~F~d~~~Ve~~L~~L~~r~lv~ 158 (183)
T 3bz6_A 105 ELVPAQVILTGLLLLRGPQTVSELLTRSNRMHDFEDSEQVVHQLERLIARGLAT 158 (183)
T ss_dssp TCCHHHHHHHHHHHHHCSBCHHHHHHHHTTTSCCSSHHHHHHHHHHHHHHTSEE
T ss_pred CCCHHHHHHHHHHHhcCCCChhHHHHhHhhccccCCHHHHHHHHHHHhcCCcee
Confidence 34455667888899999999999976654 3 6789999999999999886
No 304
>1lva_A Selenocysteine-specific elongation factor; winged-helix, translation; 2.12A {Moorella thermoacetica} SCOP: a.4.5.35 a.4.5.35 a.4.5.35 a.4.5.35 PDB: 2uwm_A 2ply_A 1wsu_A
Probab=46.32 E-value=1.9e+02 Score=26.94 Aligned_cols=106 Identities=12% Similarity=0.108 Sum_probs=74.8
Q ss_pred hHHHHHHHHHhcC--CCcHHHHHHhcCCCHHHHHHHHHHHHhccccceecccCCCCCCCCCCCccEEEechhhHHHHhch
Q 010353 21 LVAKVCECLLRKG--PLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQPDGFADGPKANTQYVVLFDNILHRVRF 98 (512)
Q Consensus 21 ~v~~V~~~Ll~~G--~ltl~~I~~~t~l~~~~Vr~aL~vLIQhn~V~~~~~~~~~~~~~~~~~~~~Y~~~~~~il~rlR~ 98 (512)
+..+|...+-..| +.++.+|....+++.+.++..|-.|++.|.|..... ..||...
T Consensus 142 ~~~~i~~~~~~~g~~pp~~~dl~~~l~~~~~~~~~~l~~l~~~g~lv~l~~------------~~~~~~~---------- 199 (258)
T 1lva_A 142 LLKDLEDKYRVSRWQPPSFKEVAGSFNLDPSELEELLHYLVREGVLVKIND------------EFYWHRQ---------- 199 (258)
T ss_dssp HHHHHHHHHHHHTTSCCBHHHHHHHTTCCHHHHHHHHHHHHHTTSEEESSS------------SBEEEHH----------
T ss_pred HHHHHHHHHHHCCCCCCCHHHHHhHhCCCHHHHHHHHHHHHHCCCEEEecC------------CeEEcHH----------
Confidence 4566777776667 557899999999999999999999999998862221 1344332
Q ss_pred hhHHHHHHHHhhhhHHHHHHHHHHcccCCHHHHHHHHhhcccCCCccCHHHHHHHHHHHHhccccccc
Q 010353 99 AKFLTILSQEFDQQCVELVQGLLEHGRLTLKQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERC 166 (512)
Q Consensus 99 pr~l~~i~~~~G~~a~~Iv~~lL~~G~l~~~~li~~~~~~~~~~~~~~~~~l~~~f~~Lv~~~fi~rv 166 (512)
.|......|.+.+ .+|.+|+.++-+.+.. |+--.-..+.-|=+.||..|+
T Consensus 200 ---------~~~~~~~~l~~~~-~~~~it~a~~Rd~lg~--------SRK~aIplLE~~Dr~g~TrR~ 249 (258)
T 1lva_A 200 ---------ALGEAREVIKNLA-STGPFGLAEARDALGS--------SRKYVLPLLEYLDQVKFTRRV 249 (258)
T ss_dssp ---------HHHHHHHHHHHHH-TTSCBCHHHHHHHHTC--------CHHHHHHHHHHHHHTTSEEEE
T ss_pred ---------HHHHHHHHHHHHH-hcCCcCHHHHHHHhCC--------cHHHHHHHHHHHhhcCceeee
Confidence 2333455556666 8899999998777632 444455666667777887776
No 305
>2g7u_A Transcriptional regulator; ICLR family, structural genomics, PSI, protein structure initiative, midwest center for struc genomics; 2.30A {Rhodococcus SP}
Probab=45.99 E-value=8.3 Score=36.38 Aligned_cols=86 Identities=14% Similarity=0.258 Sum_probs=56.5
Q ss_pred hHHHHHHHHHhc-CCCcchhhhhhhcCCCcccHHHHHHHHhhcccceEEEEecCCCCCceEEEEEEehHH--HHHHH--H
Q 010353 371 DAYRIFRLLSKS-GRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTGARQSQFLLWKVNRQI--LWKHV--L 445 (512)
Q Consensus 371 ~~~Ri~r~l~~~-~~l~eek~i~~~ami~~k~~r~~Ly~L~~~g~v~~QEvpk~~~~~~t~~lw~v~~~~--~~~~~--l 445 (512)
.+++|+++|... +.+ .-.+|++...+|...+..+|..|.+.|||.-. + +. |++.+.- +-... -
T Consensus 15 r~l~iL~~l~~~~~~~-~~~eia~~~gl~~stv~r~l~~L~~~G~v~~~--~------~~---Y~Lg~~~~~l~~~~~~~ 82 (257)
T 2g7u_A 15 RGFAVLLAFDAQRPNP-TLAELATEAGLSRPAVRRILLTLQKLGYVAGS--G------GR---WSLTPRVLSIGQHYSES 82 (257)
T ss_dssp HHHHHHHTCSSSCSSC-BHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE--T------TE---EEECGGGHHHHTTCCHH
T ss_pred HHHHHHHHHHhCCCCC-CHHHHHHHHCcCHHHHHHHHHHHHHCCCEEeC--C------CE---EEEcHHHHHHHHHhhcc
Confidence 356677777543 345 99999999999999999999999999999642 1 22 2333221 11111 1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhh
Q 010353 446 DEMFHAALNLSLRVSYELDREKE 468 (512)
Q Consensus 446 ~~~~k~~~nl~~R~~~e~~~~k~ 468 (512)
.++...+.-.+.++..+......
T Consensus 83 ~~l~~~a~p~l~~L~~~~~etv~ 105 (257)
T 2g7u_A 83 HALIEAAMPRLLEVAEKTQESAS 105 (257)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCEE
T ss_pred CcHHHHHHHHHHHHHHHHCCEEE
Confidence 35566667777777776654443
No 306
>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69
Probab=45.78 E-value=1.1e+02 Score=24.22 Aligned_cols=51 Identities=14% Similarity=0.171 Sum_probs=42.6
Q ss_pred hCch-HHHHHHHHHhcCCCcchhhhhhhc-CCCcccHHHHHHHHhhcccceEEEE
Q 010353 368 YGRD-AYRIFRLLSKSGRLLETDKISDTT-FVEKKDAPKILYKLWKDGYLLMEKL 420 (512)
Q Consensus 368 ~G~~-~~Ri~r~l~~~~~l~eek~i~~~a-mi~~k~~r~~Ly~L~~~g~v~~QEv 420 (512)
+|.. ..+|+..|.. |.+ ...+|++.. .++...+-..|.+|.+.|||.-+..
T Consensus 19 l~~~~~~~IL~~L~~-~~~-~~~eLa~~l~~is~~tvs~~L~~Le~~GlI~r~~~ 71 (112)
T 1z7u_A 19 INGKWKLSLMDELFQ-GTK-RNGELMRALDGITQRVLTDRLREMEKDGLVHRESF 71 (112)
T ss_dssp TCSTTHHHHHHHHHH-SCB-CHHHHHHHSTTCCHHHHHHHHHHHHHHTSEEEEEE
T ss_pred HcCccHHHHHHHHHh-CCC-CHHHHHHHhccCCHHHHHHHHHHHHHCCCEEEeec
Confidence 4443 4678888874 777 999999999 9999999999999999999975543
No 307
>2ia2_A Putative transcriptional regulator; SAD, PSI-2, structural genomics, structure initiative, midwest center for structural genomic transcription; 2.10A {Rhodococcus SP}
Probab=45.69 E-value=11 Score=35.72 Aligned_cols=45 Identities=22% Similarity=0.252 Sum_probs=37.0
Q ss_pred hHHHHHHHH---Hh-cCCCcHHHHHHhcCCCHHHHHHHHHHHHhccccc
Q 010353 21 LVAKVCECL---LR-KGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQ 65 (512)
Q Consensus 21 ~v~~V~~~L---l~-~G~ltl~~I~~~t~l~~~~Vr~aL~vLIQhn~V~ 65 (512)
.+.+...+| .. .+++|+.+|++.++++.+.|..-|-.|.++|+|.
T Consensus 19 sl~r~l~iL~~l~~~~~~~~~~eia~~~gl~~stv~r~l~tL~~~G~v~ 67 (265)
T 2ia2_A 19 SLARGLAVIRCFDHRNQRRTLSDVARATDLTRATARRFLLTLVELGYVA 67 (265)
T ss_dssp HHHHHHHHHHTCCSSCSSEEHHHHHHHHTCCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHHHHHHHHHHhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEE
Confidence 344444444 32 4679999999999999999999999999999997
No 308
>3r4k_A Transcriptional regulator, ICLR family; DNA/RNA-binding 3-helical bundle, profilin-like, structural joint center for structural genomics, JCSG; 2.46A {Ruegeria SP}
Probab=45.23 E-value=5.7 Score=37.64 Aligned_cols=89 Identities=8% Similarity=0.060 Sum_probs=58.2
Q ss_pred hHHHHHHHHHhc-CCCcchhhhhhhcCCCcccHHHHHHHHhhcccceEEEEecCCCCCceEEEEEEehHHHHHHHHH--H
Q 010353 371 DAYRIFRLLSKS-GRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTGARQSQFLLWKVNRQILWKHVLD--E 447 (512)
Q Consensus 371 ~~~Ri~r~l~~~-~~l~eek~i~~~ami~~k~~r~~Ly~L~~~g~v~~QEvpk~~~~~~t~~lw~v~~~~~~~~~l~--~ 447 (512)
.+++|+++|... +.+ .-.+|++...+|...+..+|..|.+.|||.- .+.+ +. |.-....-.+-..... +
T Consensus 7 Ral~IL~~l~~~~~~l-sl~eia~~lgl~ksT~~RlL~tL~~~G~v~~--~~~~----~~-Y~lG~~~~~lg~~~~~~~~ 78 (260)
T 3r4k_A 7 KALTLLTYFNHGRLEI-GLSDLTRLSGMNKATVYRLMSELQEAGFVEQ--VEGA----RS-YRLGPQVLRLAALREASVP 78 (260)
T ss_dssp HHHHHHTTCBTTBSEE-EHHHHHHHHCSCHHHHHHHHHHHHHTTSEEE--CSSS----SE-EEECTTHHHHHHHHHHHSC
T ss_pred HHHHHHHHHhhCCCCC-CHHHHHHHHCcCHHHHHHHHHHHHHCCCEEE--cCCC----Cc-EEcCHHHHHHHHHHHhcCC
Confidence 467788887653 446 9999999999999999999999999999942 1221 22 2222222222233332 4
Q ss_pred HHHHHHHHHHHHHHHHHhhh
Q 010353 448 MFHAALNLSLRVSYELDREK 467 (512)
Q Consensus 448 ~~k~~~nl~~R~~~e~~~~k 467 (512)
+...+.-.+.++..+....-
T Consensus 79 l~~~a~p~l~~L~~~~getv 98 (260)
T 3r4k_A 79 ILSASRRVLRELSEDTGETT 98 (260)
T ss_dssp HHHHHHHHHHHHHHHHSSEE
T ss_pred HHHHHHHHHHHHHHHhCCeE
Confidence 56666777777777665543
No 309
>3nw0_B Melanoma-associated antigen G1; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=44.65 E-value=11 Score=34.90 Aligned_cols=33 Identities=18% Similarity=0.330 Sum_probs=19.8
Q ss_pred cHHHHH-HHHhhcccceEEEEecCCCCCceEEEEE
Q 010353 401 DAPKIL-YKLWKDGYLLMEKLVVTGARQSQFLLWK 434 (512)
Q Consensus 401 ~~r~~L-y~L~~~g~v~~QEvpk~~~~~~t~~lw~ 434 (512)
+.|+++ -.|.++||++-+.||.++ |.+..|+|-
T Consensus 141 e~rklit~~lV~e~YLey~qvp~sd-p~~yeflWG 174 (217)
T 3nw0_B 141 DPKKLITEDFVRQRYLEYRRIPHTD-PVDYEFQWG 174 (217)
T ss_dssp --HHHHHHHHHHHTCEECC----------CCEECC
T ss_pred CHHHHHHHHHHHcCCeEEEeecCCC-CCeEEEEEc
Confidence 678888 799999999999998885 788899994
No 310
>3elk_A Putative transcriptional regulator TA0346; structural genomics, PSI-2, prote structure initiative; 1.70A {Thermoplasma acidophilum}
Probab=44.54 E-value=31 Score=28.25 Aligned_cols=68 Identities=15% Similarity=0.142 Sum_probs=47.9
Q ss_pred chhHHHHHHHHHhcCCCcHHHHHHhcC------CCHHHHHHHHHHHHhccccceecccCCCCCCCCCCCccEEEechhhH
Q 010353 19 GDLVAKVCECLLRKGPLTRQNVKRYTE------LSDEQVKNALLVLIQQNCVQAFTTEQPDGFADGPKANTQYVVLFDNI 92 (512)
Q Consensus 19 G~~v~~V~~~Ll~~G~ltl~~I~~~t~------l~~~~Vr~aL~vLIQhn~V~~~~~~~~~~~~~~~~~~~~Y~~~~~~i 92 (512)
|.+--.|-..| ..|+.+-.+|.+..+ +++..|-.+|-.|.+.|+|.....+.+++ +...+|++-..+-
T Consensus 13 g~l~~~IL~lL-~~~p~~gyel~~~l~~~~~~~i~~gtly~~L~~Le~~GlI~~~~~~~~~~-----~~rk~Y~lT~~G~ 86 (117)
T 3elk_A 13 GLITLYILKEL-VKRPMHGYELQKSMFETTGQALPQGSIYILLKTMKERGFVISESSVNEKG-----QQLTVYHITDAGK 86 (117)
T ss_dssp HHHHHHHHHHH-HHSCEEHHHHHHHHHHHHSCCCCTTHHHHHHHHHHHHTSEEEEEEEC-CC-----CEEEEEEECHHHH
T ss_pred hHHHHHHHHHH-HcCCCCHHHHHHHHHHHhCCCCCcchHHHHHHHHHHCCCEEEEeeecCCC-----CCceEEEECHHHH
Confidence 45555566555 468889888887743 89999999999999999998544322221 2356898886653
No 311
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=44.21 E-value=44 Score=28.12 Aligned_cols=46 Identities=17% Similarity=0.109 Sum_probs=37.7
Q ss_pred HHHHHHHhc-CCCcHHHHHHhc-----CCCHHHHHHHHHHHHhccccceecc
Q 010353 24 KVCECLLRK-GPLTRQNVKRYT-----ELSDEQVKNALLVLIQQNCVQAFTT 69 (512)
Q Consensus 24 ~V~~~Ll~~-G~ltl~~I~~~t-----~l~~~~Vr~aL~vLIQhn~V~~~~~ 69 (512)
.|.++|... +.+|..+|.... +++...|-..|-.|...|+|.-...
T Consensus 18 ~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~~~ 69 (139)
T 3mwm_A 18 AVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGEVDVLRT 69 (139)
T ss_dssp HHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSSEEEEC
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCCEEEEEc
Confidence 567777764 688999997664 6999999999999999999985443
No 312
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A
Probab=43.99 E-value=41 Score=29.33 Aligned_cols=58 Identities=17% Similarity=0.179 Sum_probs=48.8
Q ss_pred HHHHHHHHhhhchhHHHHHHHHHh----cC----------CCcHHHHHHhcCCCHHHHHHHHHHHHhccccc
Q 010353 8 KHAVHVITNHFGDLVAKVCECLLR----KG----------PLTRQNVKRYTELSDEQVKNALLVLIQQNCVQ 65 (512)
Q Consensus 8 ~Lc~~iv~~~FG~~v~~V~~~Ll~----~G----------~ltl~~I~~~t~l~~~~Vr~aL~vLIQhn~V~ 65 (512)
.+...+..-.+.+.-.+++.+|+. .| ++|..+|+..+|+++..|-.+|--|.+.|++.
T Consensus 99 ~~~~~~~~l~~~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~~t~~~lA~~lg~sr~tvsR~l~~L~~~g~I~ 170 (195)
T 3b02_A 99 RVQAYEAHLQTGELRARIARYLLFLADTPLSARDRQGIYVTVSHEEIADATASIRESVSKVLADLRREGLIA 170 (195)
T ss_dssp HHHHHHHHHTSSCHHHHHHHHHHHHTTSTTEEEETTEEEEECCHHHHHHTTTSCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCCCCCeeeccCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEE
Confidence 344445556788999999999987 33 36889999999999999999999999999997
No 313
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=43.85 E-value=38 Score=28.93 Aligned_cols=46 Identities=15% Similarity=0.135 Sum_probs=38.4
Q ss_pred HHHHHHHHhc--CCCcHHHHHHhc-----CCCHHHHHHHHHHHHhccccceec
Q 010353 23 AKVCECLLRK--GPLTRQNVKRYT-----ELSDEQVKNALLVLIQQNCVQAFT 68 (512)
Q Consensus 23 ~~V~~~Ll~~--G~ltl~~I~~~t-----~l~~~~Vr~aL~vLIQhn~V~~~~ 68 (512)
..|..+|... +.+|..+|.... ++++..|-.+|-.|.+.|+|.-..
T Consensus 20 ~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~~ 72 (150)
T 2w57_A 20 LKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIVTRHH 72 (150)
T ss_dssp HHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcEEEEE
Confidence 4577888765 589999998775 799999999999999999998444
No 314
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=43.75 E-value=22 Score=29.49 Aligned_cols=35 Identities=9% Similarity=0.084 Sum_probs=31.8
Q ss_pred cCCCcchhhhhhhcCCCcccHHHHHHHHhhcccceE
Q 010353 382 SGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLM 417 (512)
Q Consensus 382 ~~~l~eek~i~~~ami~~k~~r~~Ly~L~~~g~v~~ 417 (512)
.+.+ ...+|++...++...+...+.+|.+.|||.-
T Consensus 29 ~~~~-s~~ela~~l~is~~tv~~~l~~Le~~Gli~r 63 (139)
T 2x4h_A 29 GEGA-KINRIAKDLKIAPSSVFEEVSHLEEKGLVKK 63 (139)
T ss_dssp TSCB-CHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred CCCc-CHHHHHHHhCCChHHHHHHHHHHHHCCCEEe
Confidence 4455 9999999999999999999999999999964
No 315
>2gqq_A Leucine-responsive regulatory protein; helix-turn-helix, transcription; 3.20A {Escherichia coli} PDB: 2l4a_A
Probab=43.38 E-value=11 Score=32.82 Aligned_cols=49 Identities=18% Similarity=0.253 Sum_probs=41.6
Q ss_pred hCchHHHHHHHHHhcCCCcchhhhhhhcCCCcccHHHHHHHHhhcccceE
Q 010353 368 YGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLM 417 (512)
Q Consensus 368 ~G~~~~Ri~r~l~~~~~l~eek~i~~~ami~~k~~r~~Ly~L~~~g~v~~ 417 (512)
+...-.+|++.|...+.+ .+.+|++...++...+|+.+.+|..+|+|..
T Consensus 11 ~d~l~~~Il~~l~~~~~l-s~~eLa~~lgvSr~~vr~al~~L~~~Gli~~ 59 (163)
T 2gqq_A 11 LDRIDRNILNELQKDGRI-SNVELSKRVGLSPTPCLERVRRLERQGFIQG 59 (163)
T ss_dssp CCSHHHHHHHHHHHCSSC-CTTGGGTSSSCCTTTSSSTHHHHHHHTSEEE
T ss_pred hhHHHHHHHHHHHhCCCC-CHHHHHHHHCcCHHHHHHHHHHHHHCCcEEE
Confidence 444456788866666677 9999999999999999999999999999975
No 316
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...
Probab=43.29 E-value=42 Score=29.45 Aligned_cols=56 Identities=27% Similarity=0.323 Sum_probs=47.6
Q ss_pred HHHHHHhhhchhHHHHHHHHHhcC--------------CCcHHHHHHhcCCCHHHHHHHHHHHHhccccc
Q 010353 10 AVHVITNHFGDLVAKVCECLLRKG--------------PLTRQNVKRYTELSDEQVKNALLVLIQQNCVQ 65 (512)
Q Consensus 10 c~~iv~~~FG~~v~~V~~~Ll~~G--------------~ltl~~I~~~t~l~~~~Vr~aL~vLIQhn~V~ 65 (512)
...+..-.+.+..++|+..|+... ++|-.+|+..+|+++..|-..|--|.+.|++.
T Consensus 129 ~~~~~~~~~~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~~t~~~iA~~lg~sr~tvsR~l~~L~~~g~I~ 198 (210)
T 3ryp_A 129 SEKVGNLAFLDVTGRIAQTLLNLAKQPDAMTHPDGMQIKITRQEIGQIVGCSRETVGRILKMLEDQNLIS 198 (210)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHTTSTTCEEETTEEEEECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHhhCCHHHHHHHHHHHHHHhcCcCCCCCceEeccCHHHHHHHhCCcHHHHHHHHHHHHHCCcEE
Confidence 344555678889999999998631 57889999999999999999999999999997
No 317
>3k69_A Putative transcription regulator; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.95A {Lactobacillus plantarum} SCOP: a.4.5.0
Probab=43.14 E-value=25 Score=30.66 Aligned_cols=43 Identities=14% Similarity=0.168 Sum_probs=35.7
Q ss_pred HHHHHHHHhc--CCCcHHHHHHhcCCCHHHHHHHHHHHHhccccc
Q 010353 23 AKVCECLLRK--GPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQ 65 (512)
Q Consensus 23 ~~V~~~Ll~~--G~ltl~~I~~~t~l~~~~Vr~aL~vLIQhn~V~ 65 (512)
=++.-+|..+ +++|..+|+...++|+.-|++.|..|-+.|+|.
T Consensus 15 lr~l~~La~~~~~~~s~~~IA~~~~is~~~l~kil~~L~~aGlv~ 59 (162)
T 3k69_A 15 VHSILYLDAHRDSKVASRELAQSLHLNPVMIRNILSVLHKHGYLT 59 (162)
T ss_dssp HHHHHHHHTTTTSCBCHHHHHHHHTSCGGGTHHHHHHHHHTTSSE
T ss_pred HHHHHHHHhCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEE
Confidence 3444444433 468999999999999999999999999999997
No 318
>4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor}
Probab=43.03 E-value=72 Score=26.66 Aligned_cols=42 Identities=17% Similarity=0.182 Sum_probs=35.8
Q ss_pred HHHHHH--hcCCCcHHHHHHhcCCCHHHHHHHHHHHHhccccce
Q 010353 25 VCECLL--RKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQA 66 (512)
Q Consensus 25 V~~~Ll--~~G~ltl~~I~~~t~l~~~~Vr~aL~vLIQhn~V~~ 66 (512)
|-.+|. ..|++|..+|++.+++++..|-..+-.|.+.|+|.-
T Consensus 40 vL~~L~~~~~~~~t~~eLa~~l~~~~~tvs~~v~~Le~~Glv~r 83 (147)
T 4b8x_A 40 ALVLLTFSKSGELPMSKIGERLMVHPTSVTNTVDRLVRSGLVAK 83 (147)
T ss_dssp HHHHHHTSGGGEEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHCCCCCcCHHHHHHHHCCCHHHHHHHHHHHHhCCCEEE
Confidence 344443 357899999999999999999999999999999983
No 319
>1yyv_A Putative transcriptional regulator; reductive methylation, D lysine, structural genomics, PSI; HET: MLY; 2.35A {Salmonella typhimurium} SCOP: a.4.5.69
Probab=43.01 E-value=1.4e+02 Score=24.59 Aligned_cols=48 Identities=19% Similarity=0.090 Sum_probs=40.1
Q ss_pred hHHHHHHHHHhcCCCcchhhhhhhc-CCCcccHHHHHHHHhhcccceEEEE
Q 010353 371 DAYRIFRLLSKSGRLLETDKISDTT-FVEKKDAPKILYKLWKDGYLLMEKL 420 (512)
Q Consensus 371 ~~~Ri~r~l~~~~~l~eek~i~~~a-mi~~k~~r~~Ly~L~~~g~v~~QEv 420 (512)
-...|+..|. +|.+ ...+|++.. .|+...+-..|.+|.+.|||.-...
T Consensus 36 w~l~IL~~L~-~g~~-~~~eLa~~l~gis~~tls~~L~~Le~~GlV~r~~~ 84 (131)
T 1yyv_A 36 WGVLILVALR-DGTH-RFSDLRRXMGGVSEXMLAQSLQALEQDGFLNRVSY 84 (131)
T ss_dssp HHHHHHHHGG-GCCE-EHHHHHHHSTTCCHHHHHHHHHHHHHHTCEEEEEE
T ss_pred cHHHHHHHHH-cCCC-CHHHHHHHhccCCHHHHHHHHHHHHHCCcEEEEec
Confidence 3456777776 6778 999999999 6999999999999999999975433
No 320
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=42.97 E-value=17 Score=30.27 Aligned_cols=38 Identities=11% Similarity=0.246 Sum_probs=32.1
Q ss_pred cchhhhhhhcCCCcccHHHHHHHHhhcccceEEEEecC
Q 010353 386 LETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVT 423 (512)
Q Consensus 386 ~eek~i~~~ami~~k~~r~~Ly~L~~~g~v~~QEvpk~ 423 (512)
.+..+|++...++..++...+..|.+.|||....-++.
T Consensus 52 ps~~~LA~~l~~s~~~V~~~l~~Le~kGlI~~~~~~~~ 89 (128)
T 2vn2_A 52 PTPAELAERMTVSAAECMEMVRRLLQKGMIAIEEHTDE 89 (128)
T ss_dssp CCHHHHHHTSSSCHHHHHHHHHHHHHTTSSEECC----
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEeEECC
Confidence 39999999999999999999999999999988765554
No 321
>3tqn_A Transcriptional regulator, GNTR family; regulatory functions; 2.80A {Coxiella burnetii}
Probab=42.91 E-value=42 Score=27.01 Aligned_cols=30 Identities=13% Similarity=0.257 Sum_probs=28.8
Q ss_pred cHHHHHHhcCCCHHHHHHHHHHHHhccccc
Q 010353 36 TRQNVKRYTELSDEQVKNALLVLIQQNCVQ 65 (512)
Q Consensus 36 tl~~I~~~t~l~~~~Vr~aL~vLIQhn~V~ 65 (512)
|..+|+...+++...||.||..|.+.|+|.
T Consensus 35 s~~~La~~~~vSr~tvr~al~~L~~~Gli~ 64 (113)
T 3tqn_A 35 SIRKISTEYQINPLTVSKAYQSLLDDNVIE 64 (113)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHHHCCCEE
Confidence 688999999999999999999999999996
No 322
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=42.62 E-value=1.5e+02 Score=24.80 Aligned_cols=43 Identities=7% Similarity=0.020 Sum_probs=36.4
Q ss_pred HHHHHHHhcC-CCcHHHHHHhcCCCHHHHHHHHHHHHhccccce
Q 010353 24 KVCECLLRKG-PLTRQNVKRYTELSDEQVKNALLVLIQQNCVQA 66 (512)
Q Consensus 24 ~V~~~Ll~~G-~ltl~~I~~~t~l~~~~Vr~aL~vLIQhn~V~~ 66 (512)
.|-.+|...| ..+..+|++.++++++.|-..+-.|.+.|+|.-
T Consensus 35 ~vL~~L~~~~~~~~~~eLa~~l~~~~~tvs~~v~~Le~~GlV~R 78 (151)
T 4aik_A 35 VTLYNINRLPPEQSQIQLAKAIGIEQPSLVRTLDQLEEKGLITR 78 (151)
T ss_dssp HHHHHHHHSCTTSCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHcCCCCcHHHHHHHHCcCHHHHHHHHHHHHhCCCeEe
Confidence 4566666655 467799999999999999999999999999983
No 323
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1
Probab=42.42 E-value=65 Score=28.64 Aligned_cols=58 Identities=14% Similarity=0.222 Sum_probs=48.5
Q ss_pred HHHHHHHHhhhchhHHHHHHHHHhcC---------------CCcHHHHHHhcCCCHHHHHHHHHHHHhccccc
Q 010353 8 KHAVHVITNHFGDLVAKVCECLLRKG---------------PLTRQNVKRYTELSDEQVKNALLVLIQQNCVQ 65 (512)
Q Consensus 8 ~Lc~~iv~~~FG~~v~~V~~~Ll~~G---------------~ltl~~I~~~t~l~~~~Vr~aL~vLIQhn~V~ 65 (512)
.+...+..-.+.+..++++..|+... ++|..+|+...|+++..|-.+|-.|.+.|++.
T Consensus 122 ~~~~~~~~l~~~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~~~t~~~lA~~lG~sr~tvsR~l~~L~~~g~I~ 194 (222)
T 1ft9_A 122 SCMRTIEDLMFHDIKQRIAGFFIDHANTTGRQTQGGVIVSVDFTVEEIANLIGSSRQTTSTALNSLIKEGYIS 194 (222)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHHTCBCCCSCC--CCCCEECCCHHHHHHHHCSCHHHHHHHHHHHHHTTSSE
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCCCCCcEEEeccCCHHHHHHHhCCcHHHHHHHHHHHHHCCcEE
Confidence 33444555677889999999998653 37889999999999999999999999999997
No 324
>2gqq_A Leucine-responsive regulatory protein; helix-turn-helix, transcription; 3.20A {Escherichia coli} PDB: 2l4a_A
Probab=42.34 E-value=5.3 Score=34.86 Aligned_cols=51 Identities=16% Similarity=0.255 Sum_probs=44.5
Q ss_pred hchhHHHHHHHHHhcCCCcHHHHHHhcCCCHHHHHHHHHHHHhccccceec
Q 010353 18 FGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFT 68 (512)
Q Consensus 18 FG~~v~~V~~~Ll~~G~ltl~~I~~~t~l~~~~Vr~aL~vLIQhn~V~~~~ 68 (512)
+-++-..|...|-..+++|..+|+...+++...|+.+|-.|.+.|+|..|.
T Consensus 11 ~d~l~~~Il~~l~~~~~ls~~eLa~~lgvSr~~vr~al~~L~~~Gli~~~v 61 (163)
T 2gqq_A 11 LDRIDRNILNELQKDGRISNVELSKRVGLSPTPCLERVRRLERQGFIQGYT 61 (163)
T ss_dssp CCSHHHHHHHHHHHCSSCCTTGGGTSSSCCTTTSSSTHHHHHHHTSEEEEE
T ss_pred hhHHHHHHHHHHHhCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEEE
Confidence 556677888877777899999999999999999999999999999998443
No 325
>3u1d_A Uncharacterized protein; GNTR-superfamily, structural genomics, PSI-biology, midwest for structural genomics, MCSG; 1.80A {Halomicrobium mukohataei}
Probab=42.31 E-value=48 Score=28.59 Aligned_cols=66 Identities=8% Similarity=0.057 Sum_probs=47.2
Q ss_pred hHHHHHHHHHhc--CCCcchhhhhhhcC-CCcccHHHHHHHHhhcccceEEEEecCC-CCCceEEEEEEeh
Q 010353 371 DAYRIFRLLSKS--GRLLETDKISDTTF-VEKKDAPKILYKLWKDGYLLMEKLVVTG-ARQSQFLLWKVNR 437 (512)
Q Consensus 371 ~~~Ri~r~l~~~--~~l~eek~i~~~am-i~~k~~r~~Ly~L~~~g~v~~QEvpk~~-~~~~t~~lw~v~~ 437 (512)
.=.+|+..|+.+ +.. +-.+|.+.-- |+...++..|..|.+.|+|+..+.+... ..++.-..|.+..
T Consensus 30 tR~~IL~~Ll~~p~~~~-ta~eL~~~l~~lS~aTVyrhL~~L~eaGLV~~~~~~~~~~~rGrP~k~Y~LT~ 99 (151)
T 3u1d_A 30 TRLDVLHQILAQPDGVL-SVEELLYRNPDETEANLRYHVDELVDRGIVEKIPVPRAKSVDDPPTTFYAVTG 99 (151)
T ss_dssp HHHHHHHHHHHSTTSCB-CHHHHHHHCTTSCHHHHHHHHHHHHHTTSEEEEECCCCTTSSSCCCEEEEECH
T ss_pred HHHHHHHHHHcCCCCCC-CHHHHHHhcCCCCHHHHHHHHHHHHHCCCeEEeecCcCcccCCCCceEEEECH
Confidence 345677777765 234 6777887766 8999999999999999999877776533 3344445556663
No 326
>2o0y_A Transcriptional regulator; ICLR-family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.00A {Rhodococcus SP}
Probab=42.12 E-value=8.1 Score=36.57 Aligned_cols=87 Identities=6% Similarity=0.088 Sum_probs=55.4
Q ss_pred hHHHHHHHHHh-cCCCcchhhhhhhcCCCcccHHHHHHHHhhcccceEEEEecCCCCCceEEEEEEehHH--HHHHHHH-
Q 010353 371 DAYRIFRLLSK-SGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTGARQSQFLLWKVNRQI--LWKHVLD- 446 (512)
Q Consensus 371 ~~~Ri~r~l~~-~~~l~eek~i~~~ami~~k~~r~~Ly~L~~~g~v~~QEvpk~~~~~~t~~lw~v~~~~--~~~~~l~- 446 (512)
.+++|+++|.. .+.+ .-.+|++...+|...+..+|..|.+.|||.-. +.. -|++...- +-.....
T Consensus 24 r~l~iL~~l~~~~~~~-~~~eia~~~gl~kstv~r~l~tL~~~G~v~~~-------~~~---~Y~lg~~~~~lg~~~~~~ 92 (260)
T 2o0y_A 24 RVIDLLELFDAAHPTR-SLKELVEGTKLPKTTVVRLVATMCARSVLTSR-------ADG---SYSLGPEMLRWVRLAGRT 92 (260)
T ss_dssp HHHHHHTTCBTTBSSB-CHHHHHHHHCCCHHHHHHHHHHHHHTTSEEEC-------TTS---CEEECHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhCCCCc-CHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEC-------CCC---eEEecHHHHHHHHHHHcc
Confidence 35667777653 3456 99999999999999999999999999999421 111 24444332 1122221
Q ss_pred -HHHHHHHHHHHHHHHHHHhhhh
Q 010353 447 -EMFHAALNLSLRVSYELDREKE 468 (512)
Q Consensus 447 -~~~k~~~nl~~R~~~e~~~~k~ 468 (512)
++...+.-.+.++..+....-.
T Consensus 93 ~~l~~~a~p~l~~L~~~~~etv~ 115 (260)
T 2o0y_A 93 WAPPEEVVDIMRQLSADTGETVN 115 (260)
T ss_dssp HCCCHHHHHHHHHHHHHHTSEEE
T ss_pred CCHHHHHHHHHHHHHHhHCCcEE
Confidence 3445555667777666554433
No 327
>1xma_A Predicted transcriptional regulator; southea collaboratory for structural genomics, secsg, protein struc initiative, PSI; 2.30A {Clostridium thermocellum} SCOP: a.4.5.61
Probab=41.83 E-value=1.5e+02 Score=24.92 Aligned_cols=62 Identities=18% Similarity=0.214 Sum_probs=39.3
Q ss_pred HHHHHHHHHhcCCCcchhhhhhhc--------CCCcccHHHHHHHHhhcccceEEEEecCCCCCceEEEEEEeh
Q 010353 372 AYRIFRLLSKSGRLLETDKISDTT--------FVEKKDAPKILYKLWKDGYLLMEKLVVTGARQSQFLLWKVNR 437 (512)
Q Consensus 372 ~~Ri~r~l~~~~~l~eek~i~~~a--------mi~~k~~r~~Ly~L~~~g~v~~QEvpk~~~~~~t~~lw~v~~ 437 (512)
-..|+.+|.. +.. .-.+|.+.. -++...+-..|.+|.++|||.-...+....+.+.+| .+..
T Consensus 43 ~~~IL~~L~~-~~~-~gyeI~~~l~~~~~~~~~is~gtLy~~L~rLE~~GlI~~~~~~~~~~~~rk~Y--~LT~ 112 (145)
T 1xma_A 43 DTIILSLLIE-GDS-YGYEISKNIRIKTDELYVIKETTLYSAFARLEKNGYIKSYYGEETQGKRRTYY--RITP 112 (145)
T ss_dssp HHHHHHHHHH-CCE-EHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHTTSEEEEEEEEC--CEEEEE--EECH
T ss_pred HHHHHHHHHh-CCC-CHHHHHHHHHHhhCCccCcChhHHHHHHHHHHHCCCEEEEEeccCCCCCeEEE--EECH
Confidence 3445555543 333 444444333 478889999999999999998887764334556554 5553
No 328
>2ia2_A Putative transcriptional regulator; SAD, PSI-2, structural genomics, structure initiative, midwest center for structural genomic transcription; 2.10A {Rhodococcus SP}
Probab=41.73 E-value=8.8 Score=36.41 Aligned_cols=85 Identities=15% Similarity=0.167 Sum_probs=55.3
Q ss_pred HHHHHHHHHhc-CCCcchhhhhhhcCCCcccHHHHHHHHhhcccceEEEEecCCCCCceEEEEEEehH--HHHHHHH--H
Q 010353 372 AYRIFRLLSKS-GRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTGARQSQFLLWKVNRQ--ILWKHVL--D 446 (512)
Q Consensus 372 ~~Ri~r~l~~~-~~l~eek~i~~~ami~~k~~r~~Ly~L~~~g~v~~QEvpk~~~~~~t~~lw~v~~~--~~~~~~l--~ 446 (512)
+++|+.+|... +.+ .-.+|++...+|...+..+|..|.+.|||.-. + +. |++.+. .+-.... .
T Consensus 23 ~l~iL~~l~~~~~~~-~~~eia~~~gl~~stv~r~l~tL~~~G~v~~~----~----~~---Y~Lg~~~~~lg~~~~~~~ 90 (265)
T 2ia2_A 23 GLAVIRCFDHRNQRR-TLSDVARATDLTRATARRFLLTLVELGYVATD----G----SA---FWLTPRVLELGYSYLSSL 90 (265)
T ss_dssp HHHHHHTCCSSCSSE-EHHHHHHHHTCCHHHHHHHHHHHHHHTSEEES----S----SE---EEECGGGGGTTHHHHTTC
T ss_pred HHHHHHHHHhCCCCC-CHHHHHHHHCcCHHHHHHHHHHHHHCCCEEec----C----CE---EEEcHHHHHHHHHHHhcC
Confidence 56677766543 345 89999999999999999999999999999431 1 22 222221 1112222 2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhh
Q 010353 447 EMFHAALNLSLRVSYELDREKE 468 (512)
Q Consensus 447 ~~~k~~~nl~~R~~~e~~~~k~ 468 (512)
++...+.-.+.++..+....-.
T Consensus 91 ~l~~~a~p~l~~L~~~~getv~ 112 (265)
T 2ia2_A 91 SLPEVAQPHLEKLSHKVHESSS 112 (265)
T ss_dssp CHHHHHHHHHHHHHHHHTSEEE
T ss_pred CHHHHHHHHHHHHHHHHCCEEE
Confidence 4566666777777776655443
No 329
>3by6_A Predicted transcriptional regulator; structural genomics, PSI-2, MCSG, structure initiative, midwest center for structural genomic binding; 2.20A {Oenococcus oeni}
Probab=41.68 E-value=48 Score=27.32 Aligned_cols=30 Identities=13% Similarity=0.158 Sum_probs=29.1
Q ss_pred cHHHHHHhcCCCHHHHHHHHHHHHhccccc
Q 010353 36 TRQNVKRYTELSDEQVKNALLVLIQQNCVQ 65 (512)
Q Consensus 36 tl~~I~~~t~l~~~~Vr~aL~vLIQhn~V~ 65 (512)
|..+|+...+++...||.||-.|.+.|+|.
T Consensus 37 se~~La~~~~vSr~tvr~Al~~L~~~Gli~ 66 (126)
T 3by6_A 37 SVRETALQEKINPNTVAKAYKELEAQKVIR 66 (126)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHHHCCCEE
Confidence 799999999999999999999999999996
No 330
>2ek5_A Predicted transcriptional regulators; helix-turn-helix, interwined alpha helices; 2.20A {Corynebacterium glutamicum atcc 13032} PDB: 2du9_A
Probab=40.98 E-value=26 Score=29.21 Aligned_cols=32 Identities=9% Similarity=0.339 Sum_probs=29.9
Q ss_pred CC-cHHHHHHhcCCCHHHHHHHHHHHHhccccc
Q 010353 34 PL-TRQNVKRYTELSDEQVKNALLVLIQQNCVQ 65 (512)
Q Consensus 34 ~l-tl~~I~~~t~l~~~~Vr~aL~vLIQhn~V~ 65 (512)
++ |..+|+...+++...||.||..|.+.|+|.
T Consensus 27 ~LPse~~La~~~gvSr~tVr~Al~~L~~~Gli~ 59 (129)
T 2ek5_A 27 RVPSTNELAAFHRINPATARNGLTLLVEAGILY 59 (129)
T ss_dssp CBCCHHHHHHHTTCCHHHHHHHHHHHHTTTSEE
T ss_pred cCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEE
Confidence 45 789999999999999999999999999997
No 331
>1xma_A Predicted transcriptional regulator; southea collaboratory for structural genomics, secsg, protein struc initiative, PSI; 2.30A {Clostridium thermocellum} SCOP: a.4.5.61
Probab=40.81 E-value=1.3e+02 Score=25.46 Aligned_cols=66 Identities=12% Similarity=0.172 Sum_probs=46.3
Q ss_pred hhHHHHHHHHHhcCCCcHHHHHHhc--------CCCHHHHHHHHHHHHhccccceecccCCCCCCCCCCCccEEEechhh
Q 010353 20 DLVAKVCECLLRKGPLTRQNVKRYT--------ELSDEQVKNALLVLIQQNCVQAFTTEQPDGFADGPKANTQYVVLFDN 91 (512)
Q Consensus 20 ~~v~~V~~~Ll~~G~ltl~~I~~~t--------~l~~~~Vr~aL~vLIQhn~V~~~~~~~~~~~~~~~~~~~~Y~~~~~~ 91 (512)
.+--.|-..| ..|+.+..+|.+.. ++++..|-..|-.|.+.|+|.....+.++ .+...+|++-..+
T Consensus 41 ~~~~~IL~~L-~~~~~~gyeI~~~l~~~~~~~~~is~gtLy~~L~rLE~~GlI~~~~~~~~~-----~~~rk~Y~LT~~G 114 (145)
T 1xma_A 41 YVDTIILSLL-IEGDSYGYEISKNIRIKTDELYVIKETTLYSAFARLEKNGYIKSYYGEETQ-----GKRRTYYRITPEG 114 (145)
T ss_dssp THHHHHHHHH-HHCCEEHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHTTSEEEEEEEEC-------CEEEEEEECHHH
T ss_pred cHHHHHHHHH-HhCCCCHHHHHHHHHHhhCCccCcChhHHHHHHHHHHHCCCEEEEEeccCC-----CCCeEEEEECHHH
Confidence 4444555555 56899999988775 69999999999999999999843332111 1235688887654
No 332
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=40.62 E-value=93 Score=28.99 Aligned_cols=82 Identities=13% Similarity=0.136 Sum_probs=60.7
Q ss_pred HHHHHHHHhc--CCCcchhhhhhhcCCCcccHHHHHHHHhhcccceEEEEecCC-CCCceEEEEEEehHHHHHHHHHHHH
Q 010353 373 YRIFRLLSKS--GRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTG-ARQSQFLLWKVNRQILWKHVLDEMF 449 (512)
Q Consensus 373 ~Ri~r~l~~~--~~l~eek~i~~~ami~~k~~r~~Ly~L~~~g~v~~QEvpk~~-~~~~t~~lw~v~~~~~~~~~l~~~~ 449 (512)
..|+..|.++ +.+ .+++|++...+....+=.++-+|.+.|||. .+.+ ...|.++++--+.- ..+++.+.
T Consensus 37 ~~vL~~L~~~~~~~~-~~~el~~~l~~~~~t~t~~l~rLe~~G~i~----R~~~~~DrR~~~i~LT~~G---~~~~~~~~ 108 (250)
T 1p4x_A 37 FILLTYLFHQQENTL-PFKKIVSDLCYKQSDLVQHIKVLVKHSYIS----KVRSKIDERNTYISISEEQ---REKIAERV 108 (250)
T ss_dssp HHHHHHHHSCSCSEE-EHHHHHHHSSSCGGGTHHHHHHHHHTTSCE----EEECSSSTTSEEEECCHHH---HHHHHHHH
T ss_pred HHHHHHHHhcCCCCc-CHHHHHHHHCCCHhhHHHHHHHHHHCCCEE----ecCCCCCCCeEEEEECHHH---HHHHHHHH
Confidence 4677777764 356 999999999999999999999999999993 3323 56777777655532 34667777
Q ss_pred HHHHHHHHHHHHH
Q 010353 450 HAALNLSLRVSYE 462 (512)
Q Consensus 450 k~~~nl~~R~~~e 462 (512)
.....++.....|
T Consensus 109 ~~~~~~~eq~s~E 121 (250)
T 1p4x_A 109 TLFDQIIKQFNLA 121 (250)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcc
Confidence 7777777555554
No 333
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=40.47 E-value=16 Score=28.41 Aligned_cols=45 Identities=13% Similarity=-0.008 Sum_probs=36.1
Q ss_pred chHHHHHHHHHh-cCC---CcchhhhhhhcCCCcccHHHHHHHHhhcccc
Q 010353 370 RDAYRIFRLLSK-SGR---LLETDKISDTTFVEKKDAPKILYKLWKDGYL 415 (512)
Q Consensus 370 ~~~~Ri~r~l~~-~~~---l~eek~i~~~ami~~k~~r~~Ly~L~~~g~v 415 (512)
..+..|+-.+.. .+. + ...+|++...++...+-.++.+|.+.|||
T Consensus 12 ~~~~~iL~~l~~~~~~~~~~-t~~eLa~~l~i~~~tvs~~l~~Le~~Glv 60 (95)
T 2qvo_A 12 EKALEILMTIYYESLGGNDV-YIQYIASKVNSPHSYVWLIIKKFEEAKMV 60 (95)
T ss_dssp HHHHHHHHHHHHHHHTTCCE-EHHHHHHHSSSCHHHHHHHHHHHHHTTSE
T ss_pred hhHHHHHHHHHHccCCCCCc-CHHHHHHHHCcCHHHHHHHHHHHHHCcCc
Confidence 344555555543 333 6 99999999999999999999999999999
No 334
>2yu3_A DNA-directed RNA polymerase III 39 kDa polypeptide F variant; winged helix domain, RNA polymerase III C39 subunit, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=39.67 E-value=34 Score=27.09 Aligned_cols=47 Identities=15% Similarity=0.215 Sum_probs=40.1
Q ss_pred HHHHHHHHhcCC--CcHHHHHHhcCCCHHHHHHHHHHHHhccccceecc
Q 010353 23 AKVCECLLRKGP--LTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTT 69 (512)
Q Consensus 23 ~~V~~~Ll~~G~--ltl~~I~~~t~l~~~~Vr~aL~vLIQhn~V~~~~~ 69 (512)
..|..++-..|. .+..+|...++|+..+|..+|-.|...++|.....
T Consensus 40 ~lVy~~I~~aGn~GIw~kdL~~~tnL~~~~vtkiLK~LE~k~lIK~Vks 88 (95)
T 2yu3_A 40 KLVYQIIEDAGNKGIWSRDVRYKSNLPLTEINKILKNLESKKLIKAVKS 88 (95)
T ss_dssp HHHHHHHHHHTTSCEEHHHHHHHHTCCHHHHHHHHHHHHHHTSEEEECC
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHhCCCHHHHHHHHHHHHhCCCEEEecC
Confidence 357777777666 89999999999999999999999999999984443
No 335
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=39.34 E-value=47 Score=29.73 Aligned_cols=49 Identities=27% Similarity=0.289 Sum_probs=44.6
Q ss_pred hhchhH-HHHHHHHHhcC--------------CCcHHHHHHhcCCCHHHHHHHHHHHHhccccc
Q 010353 17 HFGDLV-AKVCECLLRKG--------------PLTRQNVKRYTELSDEQVKNALLVLIQQNCVQ 65 (512)
Q Consensus 17 ~FG~~v-~~V~~~Ll~~G--------------~ltl~~I~~~t~l~~~~Vr~aL~vLIQhn~V~ 65 (512)
.+++.. ++++.+|+... ++|..+|+...|+++..|-..|-.|.+.|++.
T Consensus 143 ~~~~~~~~Rl~~~L~~~~~~~~~~~~~~~~~~~~t~~~iA~~lg~sr~tvsR~l~~L~~~g~I~ 206 (231)
T 3e97_A 143 AFGQNTEAALTHVFANLYRQRLAAGVPQPEVLPLGTQDIMARTSSSRETVSRVLKRLEAHNILE 206 (231)
T ss_dssp HHHHCHHHHHHHHHHHHHHHHHHHTCSSTTEECCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HhccChHHHHHHHHHHHHHhcCCCCCCceEecCCCHHHHHHHhCCcHHHHHHHHHHHHHCCcEE
Confidence 788888 99999998753 57899999999999999999999999999997
No 336
>1v4r_A Transcriptional repressor; helix-turn-helix, winged-helix, gene regulation; NMR {Streptomyces} SCOP: a.4.5.6
Probab=39.28 E-value=5.1 Score=31.94 Aligned_cols=32 Identities=22% Similarity=0.299 Sum_probs=30.1
Q ss_pred CC-cHHHHHHhcCCCHHHHHHHHHHHHhccccc
Q 010353 34 PL-TRQNVKRYTELSDEQVKNALLVLIQQNCVQ 65 (512)
Q Consensus 34 ~l-tl~~I~~~t~l~~~~Vr~aL~vLIQhn~V~ 65 (512)
++ |..+|++..+++...|+++|-.|.+.|+|.
T Consensus 34 ~lps~~eLa~~~~vSr~tvr~al~~L~~~Gli~ 66 (102)
T 1v4r_A 34 TLPSVADIRAQFGVAAKTVSRALAVLKSEGLVS 66 (102)
T ss_dssp BCCCHHHHHHHSSSCTTHHHHHTTTTTTSSCCE
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEE
Confidence 44 899999999999999999999999999997
No 337
>3eyi_A Z-DNA-binding protein 1; alternative splicing, DNA-binding, polymorphism, DNA binding protein/Z-DNA complex, DNA binding protein/DNA complex; 1.45A {Homo sapiens} PDB: 2l4m_A
Probab=38.49 E-value=32 Score=25.52 Aligned_cols=44 Identities=11% Similarity=0.205 Sum_probs=39.7
Q ss_pred HHHHHHHHHhcCCCcHHHHHHhcCCCH-HHHHHHHHHHHhccccc
Q 010353 22 VAKVCECLLRKGPLTRQNVKRYTELSD-EQVKNALLVLIQQNCVQ 65 (512)
Q Consensus 22 v~~V~~~Ll~~G~ltl~~I~~~t~l~~-~~Vr~aL~vLIQhn~V~ 65 (512)
=.+|+++|-.+|+.+.-.|++..||.. ++|---|..|-..|++.
T Consensus 12 ee~I~~fL~~~Gp~~AL~IAK~LGlktAK~VNp~LY~m~~~~lL~ 56 (72)
T 3eyi_A 12 EEDIYRFLKDNGPQRALVIAQALGMRTAKDVNRDLYRMKSRHLLD 56 (72)
T ss_dssp HHHHHHHHHHHCSEEHHHHHHHTTCCSGGGTHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHcCCchHHHHHHHhCcchhhhcCHHHHHHHHccCcC
Confidence 356999999999999999999999965 55999999999999996
No 338
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=37.69 E-value=58 Score=28.63 Aligned_cols=57 Identities=19% Similarity=0.300 Sum_probs=47.7
Q ss_pred HHHHHHHhhhchhHHHHHHHHHh---cC-----CCcHHHHHHhcCCCHHHHHHHHHHHHhccccc
Q 010353 9 HAVHVITNHFGDLVAKVCECLLR---KG-----PLTRQNVKRYTELSDEQVKNALLVLIQQNCVQ 65 (512)
Q Consensus 9 Lc~~iv~~~FG~~v~~V~~~Ll~---~G-----~ltl~~I~~~t~l~~~~Vr~aL~vLIQhn~V~ 65 (512)
+...+..-.+.+.-.+|+.+|+. .| ++|..+|+...|+++..|-..|-.|.+.|++.
T Consensus 130 ~~~~~~~~~~~~~~~Rl~~~L~~~~~~~~~~~~~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~ 194 (216)
T 4ev0_A 130 ADLELDLLSFEEARNRVAYALLKLLRQGLGPLFQIRHHELAALAGTSRETVSRVLHALAEEGVVR 194 (216)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSEEECCHHHHHHHHTSCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhcCCccCCCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEE
Confidence 33445555678889999999984 34 56899999999999999999999999999997
No 339
>2f2e_A PA1607; transcription factor, helix-TRUN-helix, APC5613, structural genomics, PSI, protein structure initiative; HET: GLC; 1.85A {Pseudomonas aeruginosa} SCOP: a.4.5.69
Probab=37.54 E-value=56 Score=27.62 Aligned_cols=45 Identities=16% Similarity=0.082 Sum_probs=39.1
Q ss_pred HHHHHHHHHhcCCCcchhhhhhhcCCCcccHHHHHHHHhhcccceEE
Q 010353 372 AYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLME 418 (512)
Q Consensus 372 ~~Ri~r~l~~~~~l~eek~i~~~ami~~k~~r~~Ly~L~~~g~v~~Q 418 (512)
...|++.|. .|.+ ...+|++...|+...+-..|.+|.+.|+|.-.
T Consensus 26 ~l~IL~~L~-~g~~-~~~eLa~~lgis~~tls~~L~~Le~~GlI~r~ 70 (146)
T 2f2e_A 26 SMLIVRDAF-EGLT-RFGEFQKSLGLAKNILAARLRNLVEHGVMVAV 70 (146)
T ss_dssp HHHHHHHHH-TTCC-SHHHHHHHHCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHH-hCCC-CHHHHHHHhCCCHHHHHHHHHHHHHCCCEEEE
Confidence 456788885 5777 99999999999999999999999999999643
No 340
>2hoe_A N-acetylglucosamine kinase; TM1224, structural genomics, PSI-2, protein structure initiative, joint center structural genomics, JCSG; 2.46A {Thermotoga maritima} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=37.15 E-value=25 Score=34.95 Aligned_cols=44 Identities=16% Similarity=0.251 Sum_probs=40.1
Q ss_pred HHHHHHHhcCCCcchhhhhhhcCCCcccHHHHHHHHhhcccceEEE
Q 010353 374 RIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEK 419 (512)
Q Consensus 374 Ri~r~l~~~~~l~eek~i~~~ami~~k~~r~~Ly~L~~~g~v~~QE 419 (512)
+|+++|. ++.+ +-.+|++...++...+.+++.+|.++|+|.-..
T Consensus 24 ~il~~l~-~~~~-sr~~la~~~gls~~tv~~~v~~L~~~gli~~~~ 67 (380)
T 2hoe_A 24 RILKRIM-KSPV-SRVELAEELGLTKTTVGEIAKIFLEKGIVVEEK 67 (380)
T ss_dssp CSHHHHH-HSCB-CHHHHHHHHTCCHHHHHHHHHHHHHHTSEEEEE
T ss_pred HHHHHHH-cCCc-CHHHHHHHHCcCHHHHHHHHHHHHHCCCEEeec
Confidence 4788999 8888 999999999999999999999999999996544
No 341
>4ham_A LMO2241 protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, winged helix-turn-helix, four helix bundle; 1.91A {Listeria monocytogenes}
Probab=37.08 E-value=28 Score=29.00 Aligned_cols=32 Identities=13% Similarity=0.145 Sum_probs=29.7
Q ss_pred CC-cHHHHHHhcCCCHHHHHHHHHHHHhccccc
Q 010353 34 PL-TRQNVKRYTELSDEQVKNALLVLIQQNCVQ 65 (512)
Q Consensus 34 ~l-tl~~I~~~t~l~~~~Vr~aL~vLIQhn~V~ 65 (512)
++ |..+|+...+++...||.||..|.+.|+|.
T Consensus 37 ~LPser~La~~~gVSr~tVReAl~~L~~eGlv~ 69 (134)
T 4ham_A 37 KILSIREFASRIGVNPNTVSKAYQELERQEVII 69 (134)
T ss_dssp EECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred CCccHHHHHHHHCCCHHHHHHHHHHHHHCCcEE
Confidence 45 578999999999999999999999999997
No 342
>1u5t_A Appears to BE functionally related to SNF7; SNF8P; ESCRT, endosomal, trafficking, protein complex, transport protein; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54 PDB: 1w7p_A
Probab=37.07 E-value=45 Score=30.98 Aligned_cols=48 Identities=15% Similarity=-0.009 Sum_probs=41.0
Q ss_pred chhHHHHHHHHHhcCCCcHHHHHHhcCCCHHHHHHHHHHHHhccccce
Q 010353 19 GDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQA 66 (512)
Q Consensus 19 G~~v~~V~~~Ll~~G~ltl~~I~~~t~l~~~~Vr~aL~vLIQhn~V~~ 66 (512)
......|.+..-..|..|..+|....+.++...+.+|-.|++.|++|-
T Consensus 166 ~~D~~~vLe~a~~~g~vt~~~L~~~lgW~~~Ra~~~L~~l~~~G~lwv 213 (233)
T 1u5t_A 166 TSDQTKILEICSILGYSSISLLKANLGWEAVRSKSALDEMVANGLLWI 213 (233)
T ss_dssp CTTHHHHHHTTTTTSCCBHHHHHHHHCCCSHHHHHHHHHHHHTTSSEE
T ss_pred chHHHHHHHHHHhcCcCcHHHHHHHhCCCHHHHHHHHHHHHHCCCEEE
Confidence 344556666555689999999999999999999999999999999983
No 343
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Probab=36.84 E-value=63 Score=28.62 Aligned_cols=58 Identities=14% Similarity=0.148 Sum_probs=48.2
Q ss_pred HHHHHHHHhhhchhHHHHHHHHHhc----C-----------CCcHHHHHHhcCCCHHHHHHHHHHHHhccccc
Q 010353 8 KHAVHVITNHFGDLVAKVCECLLRK----G-----------PLTRQNVKRYTELSDEQVKNALLVLIQQNCVQ 65 (512)
Q Consensus 8 ~Lc~~iv~~~FG~~v~~V~~~Ll~~----G-----------~ltl~~I~~~t~l~~~~Vr~aL~vLIQhn~V~ 65 (512)
.+...+..-.+.+...+++.+|+.. | ++|..+|+...|+++..|-..|--|.+.|++.
T Consensus 126 ~~~~~~~~l~~~~~~~Rl~~~L~~l~~~~g~~~~~~~~~~~~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~ 198 (220)
T 2fmy_A 126 NSLTIINGLVFKDARLRLAEFLVQAAMDTGLKVPQGIKLELGLNTEEIALMLGTTRQTVSVLLNDFKKMGILE 198 (220)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHHHHHHHCEEETTEEEEECSSCHHHHHHHHTSCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhCCCCCCcEEEeccCCHHHHHHHhCCcHHHHHHHHHHHHHCCCEE
Confidence 3344445556788999999998764 2 67899999999999999999999999999997
No 344
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV}
Probab=36.77 E-value=84 Score=27.83 Aligned_cols=58 Identities=17% Similarity=0.184 Sum_probs=48.4
Q ss_pred HHHHHHHHhhhchhHHHHHHHHHhcC--------------CCcHHHHHHhcCCCHHHHHHHHHHHHhccccc
Q 010353 8 KHAVHVITNHFGDLVAKVCECLLRKG--------------PLTRQNVKRYTELSDEQVKNALLVLIQQNCVQ 65 (512)
Q Consensus 8 ~Lc~~iv~~~FG~~v~~V~~~Ll~~G--------------~ltl~~I~~~t~l~~~~Vr~aL~vLIQhn~V~ 65 (512)
.+...+..-.+.+..++++.+|+... ++|-.+|+...|+++..|-..|-.|.+.|++.
T Consensus 147 ~~~~~~~~l~~~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~lt~~~lA~~lg~sr~tvsR~l~~L~~~g~I~ 218 (230)
T 3iwz_A 147 DTTRKASRLAFLDVTDRIVRTLHDLSKEPEAMSHPQGTQLRVSRQELARLVGCSREMAGRVLKKLQADGLLH 218 (230)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHTTSTTCEEETTEEEEECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHhhCCCCCCCceecCCCHHHHHHHhCCcHHHHHHHHHHHHHCCCEE
Confidence 33444556678889999999998642 26889999999999999999999999999997
No 345
>2dql_A PEX protein; circadian clock associated protein, circadian clock protein; 1.70A {Anabaena SP}
Probab=36.68 E-value=1.3e+02 Score=24.26 Aligned_cols=59 Identities=15% Similarity=0.168 Sum_probs=41.4
Q ss_pred HHhcCCCcHHHHHHhc-------CCCHHHHHHHHHHHHhccccceecccCCCCCCCCCCCccEEEechhh
Q 010353 29 LLRKGPLTRQNVKRYT-------ELSDEQVKNALLVLIQQNCVQAFTTEQPDGFADGPKANTQYVVLFDN 91 (512)
Q Consensus 29 Ll~~G~ltl~~I~~~t-------~l~~~~Vr~aL~vLIQhn~V~~~~~~~~~~~~~~~~~~~~Y~~~~~~ 91 (512)
++..|+..-.+|.+.. +++...|-.+|-.|.+.|+|.......+++ ++...+|++-..+
T Consensus 30 lL~~~~~~Gyei~~~l~~~~~~~~is~gtLY~~L~rLe~~GlI~~~~~~~~~~----~~~rk~Y~LT~~G 95 (115)
T 2dql_A 30 VLLQGESYGTELIQQLETEHPTYRLSDTVLYSAIKFLEDNRAITGYWKKLEGR----GRPRRMYQVSPEW 95 (115)
T ss_dssp HHTTSCBCHHHHHHHHHHHCTTEECCHHHHHHHHHHHHHTTSEEEEEECCTTC----SSCEEEEEECGGG
T ss_pred HHHhCCCCHHHHHHHHHHHcCCCCCCcchHHHHHHHHHHCCCEEEEeeecCCC----CCCcEEEEECHHH
Confidence 4456888877776553 589999999999999999998443321111 1235789988765
No 346
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=36.45 E-value=50 Score=29.39 Aligned_cols=43 Identities=14% Similarity=0.254 Sum_probs=37.1
Q ss_pred HHHHHHHHhcC-CCcHHHHHHhcCCCHHHHHHHHHHHHhccccc
Q 010353 23 AKVCECLLRKG-PLTRQNVKRYTELSDEQVKNALLVLIQQNCVQ 65 (512)
Q Consensus 23 ~~V~~~Ll~~G-~ltl~~I~~~t~l~~~~Vr~aL~vLIQhn~V~ 65 (512)
..|.+.+-.+| +.|+.+|++..+++...|..-|-.|.+.|++.
T Consensus 12 ~~I~~~~~~~g~~~s~~eia~~lgl~~~tv~~~l~~Le~~G~i~ 55 (196)
T 3k2z_A 12 LFIEEFIEKNGYPPSVREIARRFRITPRGALLHLIALEKKGYIE 55 (196)
T ss_dssp HHHHHHHHHHSSCCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHhCCCCCHHHHHHHcCCCcHHHHHHHHHHHHCCCEE
Confidence 34555566677 68999999999999999999999999999997
No 347
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}
Probab=36.41 E-value=90 Score=27.16 Aligned_cols=58 Identities=12% Similarity=0.070 Sum_probs=48.4
Q ss_pred HHHHHHHHhhhchhHHHHHHHHHhc----C----------CCcHHHHHHhcCCCHHHHHHHHHHHHhccccc
Q 010353 8 KHAVHVITNHFGDLVAKVCECLLRK----G----------PLTRQNVKRYTELSDEQVKNALLVLIQQNCVQ 65 (512)
Q Consensus 8 ~Lc~~iv~~~FG~~v~~V~~~Ll~~----G----------~ltl~~I~~~t~l~~~~Vr~aL~vLIQhn~V~ 65 (512)
.+...+..-.+.+.-.+++..|+.. | ++|-.+|+..+|+++..|-..|--|.+.|++.
T Consensus 106 ~~~~~~~~~~~~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~~t~~~lA~~lg~sr~tvsR~l~~L~~~g~I~ 177 (202)
T 2zcw_A 106 EAYRRIERLATQRLKNRMAAALLELSETPLAHEEEGKVVLKATHDELAAAVGSVRETVTKVIGELAREGYIR 177 (202)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHTTSTTEEEETTEEEEECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCcEEccCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEE
Confidence 3344455567889999999999874 1 36889999999999999999999999999997
No 348
>3l7w_A Putative uncharacterized protein SMU.1704; PADR, transcriptional factor, transcription; HET: MSE; 2.20A {Streptococcus mutans} SCOP: a.4.5.0
Probab=36.34 E-value=1.6e+02 Score=23.24 Aligned_cols=64 Identities=9% Similarity=0.113 Sum_probs=44.9
Q ss_pred hHHHHHHHHHhcCCCcHHHHHHh----cCCCHHHHHHHHHHHHhccccceecccCCCCCCCCCCCccEEEechhh
Q 010353 21 LVAKVCECLLRKGPLTRQNVKRY----TELSDEQVKNALLVLIQQNCVQAFTTEQPDGFADGPKANTQYVVLFDN 91 (512)
Q Consensus 21 ~v~~V~~~Ll~~G~ltl~~I~~~----t~l~~~~Vr~aL~vLIQhn~V~~~~~~~~~~~~~~~~~~~~Y~~~~~~ 91 (512)
+--.|-..|. .|+.+-.+|.+. .++++..|-..|-.|.+.|+|.....+. + .+...+|++-..+
T Consensus 10 l~~~IL~~L~-~~~~~gyel~~~l~~~~~i~~~tly~~L~~Le~~GlI~~~~~~~-~-----~r~r~~y~LT~~G 77 (108)
T 3l7w_A 10 IEYLILAIVS-KHDSYGYDISQTIKLIASIKESTLYPILKKLEKAGYLSTYTQEH-Q-----GRRRKYYHLTDSG 77 (108)
T ss_dssp HHHHHHHHHH-HSCEEHHHHHHHHTTTCCCCHHHHHHHHHHHHHTTSEEEEEEEE-T-----TEEEEEEEECHHH
T ss_pred HHHHHHHHHH-cCCCcHHHHHHHHHHHhCCCcChHHHHHHHHHHCCCeEEEeecC-C-----CCcceEEEECHHH
Confidence 3344555554 578788888766 5899999999999999999998443321 2 1235688887665
No 349
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=36.04 E-value=90 Score=28.29 Aligned_cols=57 Identities=18% Similarity=0.260 Sum_probs=48.4
Q ss_pred HHHHHHHhhhchhHHHHHHHHHh----cC-----------CCcHHHHHHhcCCCHHHHHHHHHHHHhccccc
Q 010353 9 HAVHVITNHFGDLVAKVCECLLR----KG-----------PLTRQNVKRYTELSDEQVKNALLVLIQQNCVQ 65 (512)
Q Consensus 9 Lc~~iv~~~FG~~v~~V~~~Ll~----~G-----------~ltl~~I~~~t~l~~~~Vr~aL~vLIQhn~V~ 65 (512)
+...+..-.+.+.-.+|+.+|+. .| ++|..+|+...|+++..|-..|-.|.+.|++.
T Consensus 137 ~~~~~~~~~~~~~~~Rl~~~L~~l~~~~~~~~~~~~~i~~~~t~~~iA~~lG~sr~tvsR~l~~L~~~g~I~ 208 (250)
T 3e6c_C 137 YARQVAEMNTYNPTIRILRLFYELCSSQGKRVGDTYEITMPLSQKSIGEITGVHHVTVSRVLASLKRENILD 208 (250)
T ss_dssp HHHHHHHHTTSCHHHHHHHHHHHHHHHHCEEETTEEEEECCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHhCCCCCCCcEecCCCCHHHHHHHhCCcHHHHHHHHHHHHHCCCeE
Confidence 34445556788999999999975 23 67999999999999999999999999999997
No 350
>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*
Probab=36.00 E-value=38 Score=33.23 Aligned_cols=52 Identities=12% Similarity=0.087 Sum_probs=42.1
Q ss_pred HHHhhhchhHHH---------HHHHHHhcCCCcHHHHHHhcCCCHHHHHHHHHHHHhccccc
Q 010353 13 VITNHFGDLVAK---------VCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQ 65 (512)
Q Consensus 13 iv~~~FG~~v~~---------V~~~Ll~~G~ltl~~I~~~t~l~~~~Vr~aL~vLIQhn~V~ 65 (512)
|.+-.+|..... |+..| ..|+.|+.+|+..+++++..++.-|-.|...|++.
T Consensus 20 l~~~~~~~~~~~~l~~~~~l~i~~~l-~~~~~t~~eLA~~~g~~~~~l~r~Lr~L~~~Gll~ 80 (374)
T 1qzz_A 20 LLKNLGNLVTPMALRVAATLRLVDHL-LAGADTLAGLADRTDTHPQALSRLVRHLTVVGVLE 80 (374)
T ss_dssp HHHTTTCCHHHHHHHHHHHTTHHHHH-HTTCCSHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHhhHHHHHHHHHHHcChHHHH-hCCCCCHHHHHHHhCcCHHHHHHHHHHHhhCCCEE
Confidence 444455555443 45666 56899999999999999999999999999999997
No 351
>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}
Probab=35.90 E-value=68 Score=30.67 Aligned_cols=40 Identities=13% Similarity=0.128 Sum_probs=35.8
Q ss_pred HHHHHHhcCCCcHHHHHHhcCCCHHHHHHHHHHHHhccccc
Q 010353 25 VCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQ 65 (512)
Q Consensus 25 V~~~Ll~~G~ltl~~I~~~t~l~~~~Vr~aL~vLIQhn~V~ 65 (512)
|+..|- .|+.|+.+|+..+++++..++.-|-.|..+|++.
T Consensus 31 i~~~l~-~~~~t~~ela~~~~~~~~~l~r~L~~L~~~g~l~ 70 (335)
T 2r3s_A 31 VFTAIS-QGIESSQSLAQKCQTSERGMRMLCDYLVIIGFMT 70 (335)
T ss_dssp HHHHHT-TSEECHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred hHHHHh-cCCCCHHHHHHHhCCCchHHHHHHHHHHhcCCeE
Confidence 455554 4899999999999999999999999999999996
No 352
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=35.85 E-value=1e+02 Score=27.09 Aligned_cols=34 Identities=9% Similarity=0.227 Sum_probs=31.2
Q ss_pred CCcchhhhhhhcCCCcccHHHHHHHHhhcccceEE
Q 010353 384 RLLETDKISDTTFVEKKDAPKILYKLWKDGYLLME 418 (512)
Q Consensus 384 ~l~eek~i~~~ami~~k~~r~~Ly~L~~~g~v~~Q 418 (512)
.+ ..++||+...++...+-.+|.+|.++|+|..+
T Consensus 169 ~~-t~~~lA~~lg~sr~tvsR~l~~L~~~g~I~~~ 202 (220)
T 3dv8_A 169 KI-THETIANHLGSHREVITRMLRYFQVEGLVKLS 202 (220)
T ss_dssp CC-CHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred cC-CHHHHHHHhCCCHHHHHHHHHHHHHCCCEEeC
Confidence 45 89999999999999999999999999999653
No 353
>1z6r_A MLC protein; transcriptional repressor, ROK family protein, DNA binding P helix-turn-helix, phosphotransferase system; 2.70A {Escherichia coli} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 PDB: 3bp8_A
Probab=35.81 E-value=24 Score=35.41 Aligned_cols=44 Identities=14% Similarity=0.221 Sum_probs=40.9
Q ss_pred HHHHHHHHhcCCCcchhhhhhhcCCCcccHHHHHHHHhhcccceE
Q 010353 373 YRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLM 417 (512)
Q Consensus 373 ~Ri~r~l~~~~~l~eek~i~~~ami~~k~~r~~Ly~L~~~g~v~~ 417 (512)
.+|+++|..++.+ +-.+|++...++...+.+++.+|.+.|+|.-
T Consensus 19 ~~il~~l~~~~~~-sr~~la~~~~ls~~tv~~~v~~L~~~g~i~~ 62 (406)
T 1z6r_A 19 GAVYRLIDQLGPV-SRIDLSRLAQLAPASITKIVHEMLEAHLVQE 62 (406)
T ss_dssp HHHHHHHHSSCSC-CHHHHHHHTTCCHHHHHHHHHHHHHHTSEEE
T ss_pred HHHHHHHHHcCCc-CHHHHHHHHCCCHHHHHHHHHHHHHCCcEEe
Confidence 4689999998888 9999999999999999999999999999855
No 354
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2
Probab=35.45 E-value=86 Score=27.91 Aligned_cols=57 Identities=14% Similarity=0.227 Sum_probs=47.2
Q ss_pred HHHHHHHhhhchhHHHHHHHHHh----cC----------CCcHHHHHHhcCCCHHHHHHHHHHHHhccccc
Q 010353 9 HAVHVITNHFGDLVAKVCECLLR----KG----------PLTRQNVKRYTELSDEQVKNALLVLIQQNCVQ 65 (512)
Q Consensus 9 Lc~~iv~~~FG~~v~~V~~~Ll~----~G----------~ltl~~I~~~t~l~~~~Vr~aL~vLIQhn~V~ 65 (512)
+-..+..-.+.+..++++..|+. .| ++|..+|+..+|+++..|-..|--|.+.|++.
T Consensus 141 ~~~~~~~l~~~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~ 211 (232)
T 2gau_A 141 AERRTVTLTQKHVRGRLAETLLILKENFGFENDGATLSIYLSREELATLSNMTVSNAIRTLSTFVSERMLA 211 (232)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHHHHHCBCTTSSBBSCCCCHHHHHHHTTSCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCCCCcEEEcccCHHHHHHHhCCCHHHHHHHHHHHHHCCCEe
Confidence 33344555678899999999964 22 57889999999999999999999999999997
No 355
>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*
Probab=35.43 E-value=39 Score=32.96 Aligned_cols=40 Identities=13% Similarity=0.169 Sum_probs=36.3
Q ss_pred HHHHHHhcCCCcHHHHHHhcCCCHHHHHHHHHHHHhccccc
Q 010353 25 VCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQ 65 (512)
Q Consensus 25 V~~~Ll~~G~ltl~~I~~~t~l~~~~Vr~aL~vLIQhn~V~ 65 (512)
|+..| ..|+.|..+|+..+++++..++.-|-+|...|++.
T Consensus 44 i~~~l-~~~~~t~~ela~~~~~~~~~l~r~L~~L~~~g~~~ 83 (360)
T 1tw3_A 44 LVDHI-LAGARTVKALAARTDTRPEALLRLIRHLVAIGLLE 83 (360)
T ss_dssp HHHHH-HTTCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHH-hCCCCCHHHHHHHhCcCHHHHHHHHHHHHHCCCEE
Confidence 45666 56899999999999999999999999999999997
No 356
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Probab=35.17 E-value=80 Score=28.60 Aligned_cols=54 Identities=17% Similarity=0.106 Sum_probs=46.0
Q ss_pred HHHHhhhchhHHHHHHHHHhc---------------CCCcHHHHHHhcCCCHHHHHHHHHHHHhccccc
Q 010353 12 HVITNHFGDLVAKVCECLLRK---------------GPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQ 65 (512)
Q Consensus 12 ~iv~~~FG~~v~~V~~~Ll~~---------------G~ltl~~I~~~t~l~~~~Vr~aL~vLIQhn~V~ 65 (512)
.+..-.+.+.-.+|+.+|+.. -++|..+|+..+|+++..|-.+|--|.+.|++.
T Consensus 156 ~~~~l~~~~~~~Rla~~L~~l~~~~g~~~~~~~~i~~~lt~~~lA~~lG~sr~tvsR~l~~L~~~GlI~ 224 (243)
T 3la7_A 156 MIETLAHRDMGSRLVSFLLILCRDFGVPCADGITIDLKLSHQAIAEAIGSTRVTVTRLLGDLREKKMIS 224 (243)
T ss_dssp HHHHHHCSSHHHHHHHHHHHHHHHHEEECSSSEEECSCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHhCCCCCCCeEEeccCCHHHHHHHHCCcHHHHHHHHHHHHHCCCEE
Confidence 334456778899999999863 257889999999999999999999999999997
No 357
>2pjp_A Selenocysteine-specific elongation factor; SELB, protein-RNA complex, elongation factor, winged- helix, bulge, translation/RNA complex; 2.30A {Escherichia coli}
Probab=34.90 E-value=1.8e+02 Score=23.47 Aligned_cols=105 Identities=14% Similarity=0.049 Sum_probs=68.0
Q ss_pred HHHHHHHHHhcCCCcHHHHHHhcCCCHHHHHHHHHHHHhccccceecccCCCCCCCCCCCccEEEechhhHHHHhchhhH
Q 010353 22 VAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQPDGFADGPKANTQYVVLFDNILHRVRFAKF 101 (512)
Q Consensus 22 v~~V~~~Ll~~G~ltl~~I~~~t~l~~~~Vr~aL~vLIQhn~V~~~~~~~~~~~~~~~~~~~~Y~~~~~~il~rlR~pr~ 101 (512)
..+|...+-. ++.+.+++....+++.+.++..|-.|.+.|.|..-..+ .+|...
T Consensus 9 ~~~i~~~~~~-~p~~~~~la~~~~~~~~~~~~~l~~l~~~G~l~~i~~~------------~~~~~~------------- 62 (121)
T 2pjp_A 9 WQKAEPLFGD-EPWWVRDLAKETGTDEQAMRLTLRQAAQQGIITAIVKD------------RYYRND------------- 62 (121)
T ss_dssp HHHHGGGCSS-SCEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEETT------------EEEEHH-------------
T ss_pred HHHHHHHHHh-CCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEEecCC------------ceECHH-------------
Confidence 3444444422 56689999999999999999999999999988632221 234322
Q ss_pred HHHHHHHhhhhHHHHHHHHHHcccCCHHHHHHHHhhcccCCCccCHHHHHHHHHHHHhccccccc
Q 010353 102 LTILSQEFDQQCVELVQGLLEHGRLTLKQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERC 166 (512)
Q Consensus 102 l~~i~~~~G~~a~~Iv~~lL~~G~l~~~~li~~~~~~~~~~~~~~~~~l~~~f~~Lv~~~fi~rv 166 (512)
.+......|.+.+-.+|.+|+.++-+.+. .|+.-....+.-|=..||..|.
T Consensus 63 ------~~~~~~~~l~~~~~~~~~it~ae~Rd~lg--------~sRK~ai~lLE~~Dr~g~TrR~ 113 (121)
T 2pjp_A 63 ------RIVEFANMIRDLDQECGSTCAADFRDRLG--------VGRKLAIQILEYFDRIGFTRRR 113 (121)
T ss_dssp ------HHHHHHHHHHHHHHHHSSEEHHHHHHHHT--------SCHHHHHHHHHHHHHHTSEEEE
T ss_pred ------HHHHHHHHHHHHHHHCCCccHHHHHHHHC--------CcHHHHHHHHHHHhhcCCeEee
Confidence 12333455555666789999888877762 1444344555555556666655
No 358
>2qc0_A Uncharacterized protein; NP_719793.1, uncharacterized protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Shewanella oneidensis} PDB: 3eqx_A*
Probab=34.86 E-value=41 Score=33.56 Aligned_cols=54 Identities=11% Similarity=0.157 Sum_probs=44.5
Q ss_pred HHHHHHh-CchHHHHHHHHHhcCCCcchhhhhhhcCCCcccHHHHHHHHhhcccce
Q 010353 362 SVVSKRY-GRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLL 416 (512)
Q Consensus 362 ~~v~~~~-G~~~~Ri~r~l~~~~~l~eek~i~~~ami~~k~~r~~Ly~L~~~g~v~ 416 (512)
..+..+. +..+.+|+..|..+.. +.-+.+++...++...|+..|.+|.+.|+|.
T Consensus 288 ~~~~~~~~~~~~~~ll~~l~~~p~-~t~~~~~~~~gvS~~Ta~r~L~~L~e~GiL~ 342 (373)
T 2qc0_A 288 EYVRQQLPKIYSHELVQVIFEQPY-CRIQNLVESGLAKRQTASVYLKQLCDIGVLE 342 (373)
T ss_dssp HHHHHHCTTTCCHHHHHHHHHCSE-EEHHHHHHTSSSCHHHHHHHHHHHHHTTSCE
T ss_pred HHHHHhccchhHHHHHHHHHhCCc-ccHHHHHHHhCCCHHHHHHHHHHHHHCCcEE
Confidence 3444444 4667899999987644 4889999999999999999999999999994
No 359
>3cuq_A Vacuolar-sorting protein SNF8; ESCRT, MBV, VPS, nucleus, protein transport, transc transcription regulation, transport, endosome; 2.61A {Homo sapiens} PDB: 2zme_A
Probab=34.83 E-value=55 Score=30.44 Aligned_cols=46 Identities=15% Similarity=0.117 Sum_probs=40.1
Q ss_pred hhHHHHHHHHHhcCCCcHHHHHHhcCCCHHHHHHHHHHHHhccccc
Q 010353 20 DLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQ 65 (512)
Q Consensus 20 ~~v~~V~~~Ll~~G~ltl~~I~~~t~l~~~~Vr~aL~vLIQhn~V~ 65 (512)
.....|....-..|..|..+|....+.+....+.+|-.|++.|+++
T Consensus 154 ~D~~~vLela~~~g~vt~~~L~~~l~W~~~Ra~~~L~~l~~~Gllw 199 (234)
T 3cuq_A 154 MDHTVVLQLAEKNGYVTVSEIKASLKWETERARQVLEHLLKEGLAW 199 (234)
T ss_dssp HHHHHHHHHHTTTSEECHHHHHHHHTCCHHHHHHHHHHHHHHTSCE
T ss_pred hHHHHHHHHHHhcCcCcHHHHHHHhCCCHHHHHHHHHHHHhCCCEE
Confidence 3445565656668999999999999999999999999999999998
No 360
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=34.68 E-value=30 Score=30.94 Aligned_cols=41 Identities=22% Similarity=0.252 Sum_probs=34.9
Q ss_pred HHHhcCCCcchhhhhhhcCCCcccHHHHHHHHhhcccceEE
Q 010353 378 LLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLME 418 (512)
Q Consensus 378 ~l~~~~~l~eek~i~~~ami~~k~~r~~Ly~L~~~g~v~~Q 418 (512)
.+.++|.-...++|++...++...++..|.+|.+.|||.-.
T Consensus 17 ~~~~~g~~~s~~eia~~lgl~~~tv~~~l~~Le~~G~i~~~ 57 (196)
T 3k2z_A 17 FIEKNGYPPSVREIARRFRITPRGALLHLIALEKKGYIERK 57 (196)
T ss_dssp HHHHHSSCCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEECC
T ss_pred HHHHhCCCCCHHHHHHHcCCCcHHHHHHHHHHHHCCCEEec
Confidence 44556765599999999999999999999999999999543
No 361
>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}
Probab=34.64 E-value=43 Score=32.25 Aligned_cols=40 Identities=10% Similarity=0.196 Sum_probs=36.0
Q ss_pred HHHHHHhcCCCcHHHHHHhcCCCHHHHHHHHHHHHhccccc
Q 010353 25 VCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQ 65 (512)
Q Consensus 25 V~~~Ll~~G~ltl~~I~~~t~l~~~~Vr~aL~vLIQhn~V~ 65 (512)
|+..| ..|+.|+.+|+..+++++..++.-|-.|..+|++.
T Consensus 33 i~~~l-~~~~~t~~ela~~~~~~~~~l~r~Lr~L~~~g~l~ 72 (334)
T 2ip2_A 33 LADLI-ESGIDSDETLAAAVGSDAERIHRLMRLLVAFEIFQ 72 (334)
T ss_dssp HHHHH-HTTCCSHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred cHHHH-hCCCCCHHHHHHHhCcCHHHHHHHHHHHHhCCceE
Confidence 45566 45899999999999999999999999999999997
No 362
>2l0k_A Stage III sporulation protein D; SPOIIID, solution structure, DNA binding, bacillus subti transcription factor, transcription; NMR {Bacillus subtilis}
Probab=34.10 E-value=45 Score=26.18 Aligned_cols=34 Identities=15% Similarity=0.165 Sum_probs=29.7
Q ss_pred hHHHHHHHHHhcCCCcHHHHHHhcCCCHHHHHHHH
Q 010353 21 LVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNAL 55 (512)
Q Consensus 21 ~v~~V~~~Ll~~G~ltl~~I~~~t~l~~~~Vr~aL 55 (512)
--..|..+|..+| .|+.+|++..|++...|+..|
T Consensus 8 R~~~I~~~l~~~~-~ti~dlA~~~gVS~~TVsR~L 41 (93)
T 2l0k_A 8 RTIKIGKYIVETK-KTVRVIAKEFGVSKSTVHKDL 41 (93)
T ss_dssp HHHHHHHHHHHHC-CCHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHHHcC-CCHHHHHHHHCCCHHHHHHHH
Confidence 3456888888888 799999999999999999976
No 363
>1j1v_A Chromosomal replication initiator protein DNAA, 5'-D(*CP*CP*TP*GP*TP*GP*GP*AP*TP*AP*AP*CP*A)-3'; protein-DNA complex; 2.10A {Escherichia coli} SCOP: a.4.12.2
Probab=34.03 E-value=1.1e+02 Score=23.83 Aligned_cols=49 Identities=6% Similarity=0.006 Sum_probs=37.6
Q ss_pred HHHHHHHhhhc---------------hhHHHHHHHHHhc-CCCcHHHHHHhc-CCCHHHHHHHHHH
Q 010353 9 HAVHVITNHFG---------------DLVAKVCECLLRK-GPLTRQNVKRYT-ELSDEQVKNALLV 57 (512)
Q Consensus 9 Lc~~iv~~~FG---------------~~v~~V~~~Ll~~-G~ltl~~I~~~t-~l~~~~Vr~aL~v 57 (512)
.....|.++|| -.+..|+-+|.+. ..+||++|.+.. |-+.+.|-+|+-.
T Consensus 5 ~I~~~Va~~f~i~~~dl~s~~R~~~i~~aRqiamyL~r~~t~~Sl~~IG~~fggrdHsTV~ha~~k 70 (94)
T 1j1v_A 5 NIQKTVAEYYKIKVADLLSKRRSRSVARPRQMAMALAKELTNHSLPEIGDAFGGRDHTTVLHACRK 70 (94)
T ss_dssp HHHHHHHHHTTCCHHHHHSCCCCHHHHHHHHHHHHHHHHHSCCCHHHHHHHTTSCCHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHhCCCCCchhHHHHHHHHHHHHHHHCcCHHHHHHHhCCCCHHHHHHHHHH
Confidence 34456778888 3466788898877 688999999998 6888887777644
No 364
>3df8_A Possible HXLR family transcriptional factor; APC89000, structural genomics, midwest center for structural genomics, MCSG; 1.65A {Thermoplasma volcanium} SCOP: a.4.5.0
Probab=33.99 E-value=37 Score=27.31 Aligned_cols=47 Identities=13% Similarity=0.171 Sum_probs=39.0
Q ss_pred chHHHHHHHHHhcCCCcc--hhhhhhhc-CCCcccHHHHHHHHhhcccceEE
Q 010353 370 RDAYRIFRLLSKSGRLLE--TDKISDTT-FVEKKDAPKILYKLWKDGYLLME 418 (512)
Q Consensus 370 ~~~~Ri~r~l~~~~~l~e--ek~i~~~a-mi~~k~~r~~Ly~L~~~g~v~~Q 418 (512)
.-..+|++.|. .|.. . ..+|++.. .|+.+.+-..|-.|.+.|+|.-.
T Consensus 27 ~wrl~IL~~L~-~g~~-~~~~~eL~~~l~gis~~~ls~~L~~Le~~GlV~r~ 76 (111)
T 3df8_A 27 KYTMLIISVLG-NGST-RQNFNDIRSSIPGISSTILSRRIKDLIDSGLVERR 76 (111)
T ss_dssp TTHHHHHHHHT-SSSS-CBCHHHHHHTSTTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred ccHHHHHHHHh-cCCC-CCCHHHHHHHccCCCHHHHHHHHHHHHHCCCEEEe
Confidence 33456787776 5666 6 99999999 99999999999999999999643
No 365
>4a5n_A Uncharacterized HTH-type transcriptional regulato; activator, DNA binding, MARR-like; 1.81A {Bacillus subtilis} PDB: 4a5m_A
Probab=33.60 E-value=1.2e+02 Score=25.14 Aligned_cols=53 Identities=15% Similarity=0.129 Sum_probs=42.7
Q ss_pred HhCch-HHHHHHHHHhcCCCcchhhhhhhc-CCCcccHHHHHHHHhhcccceEEEEe
Q 010353 367 RYGRD-AYRIFRLLSKSGRLLETDKISDTT-FVEKKDAPKILYKLWKDGYLLMEKLV 421 (512)
Q Consensus 367 ~~G~~-~~Ri~r~l~~~~~l~eek~i~~~a-mi~~k~~r~~Ly~L~~~g~v~~QEvp 421 (512)
.+|.+ ...|++.|. .|.+ .-.+|++.. .|+.+..-..|-+|.+.|+|.-...|
T Consensus 22 ~lg~kW~l~IL~~L~-~g~~-rf~eL~~~l~gIs~~~Ls~~L~~Le~~GLV~R~~~~ 76 (131)
T 4a5n_A 22 VIGGKWKGILFYHMI-DGKK-RFNEFRRICPSITQRMLTLQLRELEADGIVHREVYH 76 (131)
T ss_dssp HHCSSSHHHHHHHHT-TSCB-CHHHHHHHCTTSCHHHHHHHHHHHHHTTSEEEEEEC
T ss_pred HHcCcCHHHHHHHHh-cCCc-CHHHHHHHhcccCHHHHHHHHHHHHHCCCEEEEecC
Confidence 34444 566777776 6777 999999999 99999999999999999999755433
No 366
>2do7_A Cullin-4B, CUL-4B; helix-turn-helix motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=33.56 E-value=76 Score=25.35 Aligned_cols=54 Identities=17% Similarity=0.176 Sum_probs=42.9
Q ss_pred hHHHHHHHHHHcccCCHHHHHHHHhhcccCCCccCHHHHHHHHHHHHhcccccccC
Q 010353 112 QCVELVQGLLEHGRLTLKQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCP 167 (512)
Q Consensus 112 ~a~~Iv~~lL~~G~l~~~~li~~~~~~~~~~~~~~~~~l~~~f~~Lv~~~fi~rv~ 167 (512)
.-+.||...=....++-.+|+..+.+... -..+...++..+..|++.+||.|.+
T Consensus 32 iqAaIVRIMK~rK~l~h~~Lv~eV~~ql~--F~p~~~~IKk~IE~LIereYleR~~ 85 (101)
T 2do7_A 32 IDAAIVRIMKMRKTLSHNLLVSEVYNQLK--FPVKPADLKKRIESLIDRDYMERDK 85 (101)
T ss_dssp HHHHHHHHHHHSSEEEHHHHHHHHHHHCS--SCCCHHHHHHHHHHHHHTTSEEECS
T ss_pred HHHHHHHHHhhcccccHHHHHHHHHHHcC--CCCCHHHHHHHHHHHhhhhHHhcCC
Confidence 45677777778888888888887766433 2246888999999999999999985
No 367
>2zkz_A Transcriptional repressor PAGR; protein-DNA, HTH motif, dimer, DN binding, transcription regulation; 2.00A {Bacillus anthracis}
Probab=33.55 E-value=81 Score=24.45 Aligned_cols=62 Identities=15% Similarity=0.177 Sum_probs=47.7
Q ss_pred chHHHHHHHHHhcCCCcchhhhhhhcCCCcccHHHHHHHHhhcccceEEEEecCCCCCceEEEEEEehHHH
Q 010353 370 RDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTGARQSQFLLWKVNRQIL 440 (512)
Q Consensus 370 ~~~~Ri~r~l~~~~~l~eek~i~~~ami~~k~~r~~Ly~L~~~g~v~~QEvpk~~~~~~t~~lw~v~~~~~ 440 (512)
+.-.+|++.|..+|.+ .-.+|++...++...+...|..|.+. +|.... . ++. .+|+++.+.+
T Consensus 27 ~~Rl~IL~~l~~~~~~-~~~ela~~l~is~stvs~hL~~L~~~-lv~~~~---~---gr~-~~y~l~~~~~ 88 (99)
T 2zkz_A 27 PMRLKIVNELYKHKAL-NVTQIIQILKLPQSTVSQHLCKMRGK-VLKRNR---Q---GLE-IYYSINNPKV 88 (99)
T ss_dssp HHHHHHHHHHHHHSCE-EHHHHHHHHTCCHHHHHHHHHHHBTT-TBEEEE---E---TTE-EEEECCCHHH
T ss_pred HHHHHHHHHHHHCCCc-CHHHHHHHHCcCHHHHHHHHHHHHHH-hhhheE---e---CcE-EEEEEChHHH
Confidence 3456789777777888 99999999999999999999999999 985432 1 233 3467776543
No 368
>1z05_A Transcriptional regulator, ROK family; structural genomics, protein structure initiative, midwest center for structural genomics; 2.00A {Vibrio cholerae o1 biovar eltor} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=33.52 E-value=30 Score=35.06 Aligned_cols=45 Identities=16% Similarity=0.256 Sum_probs=41.0
Q ss_pred HHHHHHHHhcCCCcchhhhhhhcCCCcccHHHHHHHHhhcccceEE
Q 010353 373 YRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLME 418 (512)
Q Consensus 373 ~Ri~r~l~~~~~l~eek~i~~~ami~~k~~r~~Ly~L~~~g~v~~Q 418 (512)
.+|+++|..++.+ +-.+|++...++...+.+++.+|.++|+|.-.
T Consensus 42 ~~il~~l~~~~~~-sr~ela~~~gls~~tv~~~v~~L~~~gli~~~ 86 (429)
T 1z05_A 42 GRVYKLIDQKGPI-SRIDLSKESELAPASITKITRELIDAHLIHET 86 (429)
T ss_dssp HHHHHHHHHHCSB-CHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHcCCc-CHHHHHHHHCCCHHHHHHHHHHHHHCCCEEec
Confidence 5689999999888 99999999999999999999999999998543
No 369
>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*
Probab=33.44 E-value=66 Score=31.35 Aligned_cols=40 Identities=15% Similarity=0.152 Sum_probs=35.7
Q ss_pred HHHHHHhcCCCcHHHHHHhcCCCHHHHHHHHHHHHhccccc
Q 010353 25 VCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQ 65 (512)
Q Consensus 25 V~~~Ll~~G~ltl~~I~~~t~l~~~~Vr~aL~vLIQhn~V~ 65 (512)
|+..|- .|+.|+.+|+..+++++..++.-|-.|..+|++.
T Consensus 56 if~~L~-~~~~t~~eLA~~~g~~~~~l~rlLr~L~~~gll~ 95 (359)
T 1x19_A 56 LFSHMA-EGPKDLATLAADTGSVPPRLEMLLETLRQMRVIN 95 (359)
T ss_dssp HHHHHT-TCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred cHHHHc-CCCCCHHHHHHHhCcChHHHHHHHHHHHhCCCeE
Confidence 455554 4899999999999999999999999999999997
No 370
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*
Probab=33.42 E-value=89 Score=27.68 Aligned_cols=56 Identities=21% Similarity=0.298 Sum_probs=47.1
Q ss_pred HHHHHHhhhchhHHHHHHHHHhc---------------CCCcHHHHHHhcCCCHHHHHHHHHHHHhccccc
Q 010353 10 AVHVITNHFGDLVAKVCECLLRK---------------GPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQ 65 (512)
Q Consensus 10 c~~iv~~~FG~~v~~V~~~Ll~~---------------G~ltl~~I~~~t~l~~~~Vr~aL~vLIQhn~V~ 65 (512)
...+..-.+.+...+++..|+.. -++|-.+|+..+|+++..|-..|-.|.+.|++.
T Consensus 138 ~~~~~~l~~~~~~~Rl~~~L~~l~~~~~~~~~~~~~i~~~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~ 208 (227)
T 3d0s_A 138 NNNLADLIFTDVPGRVAKQLLQLAQRFGTQEGGALRVTHDLTQEEIAQLVGASRETVNKALADFAHRGWIR 208 (227)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHHHHHEEEETTEEEEECCCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHhCCcCCCceEEcCCCCHHHHHHHhCCcHHHHHHHHHHHHHCCCEE
Confidence 33445556788999999999852 147899999999999999999999999999997
No 371
>3hrs_A Metalloregulator SCAR; DTXR/MNTR family member, transcription; 2.70A {Streptococcus gordonii} PDB: 3hrt_A 3hru_A
Probab=33.39 E-value=40 Score=30.60 Aligned_cols=42 Identities=14% Similarity=0.229 Sum_probs=36.2
Q ss_pred HHHHHHhcCCCcHHHHHHhcCCCHHHHHHHHHHHHhccccce
Q 010353 25 VCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQA 66 (512)
Q Consensus 25 V~~~Ll~~G~ltl~~I~~~t~l~~~~Vr~aL~vLIQhn~V~~ 66 (512)
|....-..|.++..+|++..+++++.|..+|-.|.+.|+|.+
T Consensus 11 I~~l~~~~~~~~~~~lA~~l~vs~~tvs~~l~~Le~~GlV~r 52 (214)
T 3hrs_A 11 LYELGTRHNKITNKEIAQLMQVSPPAVTEMMKKLLAEELLIK 52 (214)
T ss_dssp HHHTTSSCSCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHhcCCCcCHHHHHHHHCCChhHHHHHHHHHHHCCCEEE
Confidence 333333578999999999999999999999999999999983
No 372
>1w7p_D VPS36P, YLR417W; ESCRT-II complex, endosomal protein sorting, protein transpo; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54
Probab=32.44 E-value=54 Score=34.61 Aligned_cols=48 Identities=6% Similarity=-0.001 Sum_probs=42.9
Q ss_pred hchhHHHHHHHHHhcCCCcHHHHHHhcC-------CCHHHHHHHHHHHHhccccc
Q 010353 18 FGDLVAKVCECLLRKGPLTRQNVKRYTE-------LSDEQVKNALLVLIQQNCVQ 65 (512)
Q Consensus 18 FG~~v~~V~~~Ll~~G~ltl~~I~~~t~-------l~~~~Vr~aL~vLIQhn~V~ 65 (512)
++.+..+|...+-.+|..|..+|.+..+ .+....+..|-.+++.|+++
T Consensus 492 ~~~~~~~il~l~~~~g~vT~~~la~~lg~~~~~~~Ws~~~A~e~L~~~e~eG~l~ 546 (566)
T 1w7p_D 492 FDVVKEKLVDLIGDNPGSDLLRLTQILSSNNSKSNWTLGILMEVLQNCVDEGDLL 546 (566)
T ss_dssp HHHHHHHHHHHHTTSTTCCHHHHHHHHSCSSSCCCBCHHHHHHHHHHHHHTTSEE
T ss_pred chHHHHHHHHHHHhcCCcCHHHHHHHhCCccccCcccHHHHHHHHHHHHHcCCEE
Confidence 3566777777776789999999999999 99999999999999999998
No 373
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV}
Probab=32.43 E-value=1.5e+02 Score=26.09 Aligned_cols=54 Identities=22% Similarity=0.241 Sum_probs=41.4
Q ss_pred HHHHhCchHHHHHHHHHhcC--------------CCcchhhhhhhcCCCcccHHHHHHHHhhcccceEE
Q 010353 364 VSKRYGRDAYRIFRLLSKSG--------------RLLETDKISDTTFVEKKDAPKILYKLWKDGYLLME 418 (512)
Q Consensus 364 v~~~~G~~~~Ri~r~l~~~~--------------~l~eek~i~~~ami~~k~~r~~Ly~L~~~g~v~~Q 418 (512)
..-.+...--|+.++|.... .+ ..++||+...++...+-.+|.+|.++|+|..+
T Consensus 153 ~~l~~~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~l-t~~~lA~~lg~sr~tvsR~l~~L~~~g~I~~~ 220 (230)
T 3iwz_A 153 SRLAFLDVTDRIVRTLHDLSKEPEAMSHPQGTQLRV-SRQELARLVGCSREMAGRVLKKLQADGLLHAR 220 (230)
T ss_dssp HHHHHCCHHHHHHHHHHHHTTSTTCEEETTEEEEEC-CHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHhcCCHHHHHHHHHHHHHHhhCCCCCCCceecCC-CHHHHHHHhCCcHHHHHHHHHHHHHCCCEEEC
Confidence 33445555666766665421 14 78999999999999999999999999999764
No 374
>3eqx_A FIC domain containing transcriptional regulator; FIC family protein, structural genomics, joint center for ST genomics, JCSG; HET: MSE PGE; 1.60A {Shewanella oneidensis}
Probab=32.38 E-value=54 Score=32.69 Aligned_cols=53 Identities=11% Similarity=0.159 Sum_probs=43.9
Q ss_pred HHHHHh-CchHHHHHHHHHhcCCCcchhhhhhhcCCCcccHHHHHHHHhhcccce
Q 010353 363 VVSKRY-GRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLL 416 (512)
Q Consensus 363 ~v~~~~-G~~~~Ri~r~l~~~~~l~eek~i~~~ami~~k~~r~~Ly~L~~~g~v~ 416 (512)
.+++.. +..+.++++.|..++.+ .-+.+++...++...|+..|.+|.+.|++.
T Consensus 289 ~~~~~~~~~~~~~ll~~l~~~p~~-t~~~~~~~~~~S~~TA~r~L~~L~e~GiL~ 342 (373)
T 3eqx_A 289 YVRQQLPKIYSHELVQVIFEQPYC-RIQNLVESGLAKRQTASVYLKQLCDIGVLE 342 (373)
T ss_dssp HHHHHCTTTCCHHHHHHHHHCSEE-EHHHHHHTSSSCHHHHHHHHHHHHHTTSCE
T ss_pred HHHHhcCcHHHHHHHHHHHHCCCc-cHHHHHHHhCcCHHHHHHHHHHHHHCCcEE
Confidence 344333 34467899999888666 999999999999999999999999999994
No 375
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2
Probab=32.30 E-value=1.6e+02 Score=25.94 Aligned_cols=32 Identities=9% Similarity=0.214 Sum_probs=30.0
Q ss_pred chhhhhhhcCCCcccHHHHHHHHhhcccceEE
Q 010353 387 ETDKISDTTFVEKKDAPKILYKLWKDGYLLME 418 (512)
Q Consensus 387 eek~i~~~ami~~k~~r~~Ly~L~~~g~v~~Q 418 (512)
..++||+...++...+-.+|.+|.++|+|...
T Consensus 182 t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~~ 213 (232)
T 2gau_A 182 SREELATLSNMTVSNAIRTLSTFVSERMLALD 213 (232)
T ss_dssp CHHHHHHHTTSCHHHHHHHHHHHHHTTSEEEE
T ss_pred CHHHHHHHhCCCHHHHHHHHHHHHHCCCEeeC
Confidence 89999999999999999999999999999554
No 376
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2
Probab=32.29 E-value=93 Score=27.00 Aligned_cols=53 Identities=32% Similarity=0.322 Sum_probs=44.5
Q ss_pred HHHhhhchhHHHHHHHHHhc----C----------CCcHHHHHHhcCCCHHHHHHHHHHHHhccccc
Q 010353 13 VITNHFGDLVAKVCECLLRK----G----------PLTRQNVKRYTELSDEQVKNALLVLIQQNCVQ 65 (512)
Q Consensus 13 iv~~~FG~~v~~V~~~Ll~~----G----------~ltl~~I~~~t~l~~~~Vr~aL~vLIQhn~V~ 65 (512)
+..-.+.+...+++..|+.. | ++|..+|+...|+++..|-..|--|.+.|++.
T Consensus 129 ~~~l~~~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~ 195 (207)
T 2oz6_A 129 VGDLAFLDVTGRVARTLLDLCQQPDAMTHPDGMQIKITRQEIGRIVGCSREMVGRVLKSLEEQGLVH 195 (207)
T ss_dssp HHHHHHCCHHHHHHHHHHHHTTSTTCEEETTEEEEECCHHHHHHHHTSCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHhcCCHHHHHHHHHHHHHHhcCCCCCCCceecccCHHHHHHHhCCCHHHHHHHHHHHHHCCCEE
Confidence 34446788889999998632 1 46889999999999999999999999999997
No 377
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=32.21 E-value=86 Score=27.07 Aligned_cols=46 Identities=13% Similarity=0.104 Sum_probs=37.9
Q ss_pred HHHHHHHHhc-CCCcHHHHHHh-------cCCCHHHHHHHHHHHHhccccceec
Q 010353 23 AKVCECLLRK-GPLTRQNVKRY-------TELSDEQVKNALLVLIQQNCVQAFT 68 (512)
Q Consensus 23 ~~V~~~Ll~~-G~ltl~~I~~~-------t~l~~~~Vr~aL~vLIQhn~V~~~~ 68 (512)
..|.++|... +.+|..+|... .++++..|-.+|-.|.+.|+|.-..
T Consensus 36 ~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv~~i~ 89 (162)
T 4ets_A 36 EVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMVTSIS 89 (162)
T ss_dssp HHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSEEECC
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCEEEEE
Confidence 4578888876 78999999653 4689999999999999999997443
No 378
>1r7j_A Conserved hypothetical protein SSO10A; winged helix-turn-helix, two-stranded antiparallel coiled CO structural genomics, PSI; 1.47A {Sulfolobus solfataricus} SCOP: a.4.5.49 PDB: 1xsx_A
Probab=32.07 E-value=36 Score=26.72 Aligned_cols=42 Identities=14% Similarity=0.045 Sum_probs=35.2
Q ss_pred HHHHHHHhcCCCcchhhhhhhcCCCcccHHHHHHHHhhcccceEE
Q 010353 374 RIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLME 418 (512)
Q Consensus 374 Ri~r~l~~~~~l~eek~i~~~ami~~k~~r~~Ly~L~~~g~v~~Q 418 (512)
.|++.+. .| . .-.+|+..+.++...++..+..|.+.|||...
T Consensus 12 ~IL~~i~-~~-~-~~t~La~~~~ls~~~~~~~l~~L~~~GLI~~~ 53 (95)
T 1r7j_A 12 AILEACK-SG-S-PKTRIMYGANLSYALTGRYIKMLMDLEIIRQE 53 (95)
T ss_dssp HHHHHHT-TC-B-CHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHH-cC-C-CHHHHHHHhCcCHHHHHHHHHHHHHCCCeEEE
Confidence 4555554 45 5 99999999999999999999999999999544
No 379
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...
Probab=31.47 E-value=1.4e+02 Score=25.82 Aligned_cols=51 Identities=14% Similarity=0.131 Sum_probs=39.6
Q ss_pred HhCchHHHHHHHHHhcC--------------CCcchhhhhhhcCCCcccHHHHHHHHhhcccceEE
Q 010353 367 RYGRDAYRIFRLLSKSG--------------RLLETDKISDTTFVEKKDAPKILYKLWKDGYLLME 418 (512)
Q Consensus 367 ~~G~~~~Ri~r~l~~~~--------------~l~eek~i~~~ami~~k~~r~~Ly~L~~~g~v~~Q 418 (512)
.+....-||.++|..-. .+ ..++||+...++...+-.+|.+|.++|+|..+
T Consensus 136 ~~~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~~-t~~~iA~~lg~sr~tvsR~l~~L~~~g~I~~~ 200 (210)
T 3ryp_A 136 AFLDVTGRIAQTLLNLAKQPDAMTHPDGMQIKI-TRQEIGQIVGCSRETVGRILKMLEDQNLISAH 200 (210)
T ss_dssp HHSCHHHHHHHHHHHHTTSTTCEEETTEEEEEC-CHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred hhCCHHHHHHHHHHHHHHhcCcCCCCCceEecc-CHHHHHHHhCCcHHHHHHHHHHHHHCCcEEeC
Confidence 34555566666665311 24 78999999999999999999999999999764
No 380
>3g2b_A Coenzyme PQQ synthesis protein D; helix-turn-helix, PQQ biosynthesis, biosynthetic protein; 1.66A {Xanthomonas campestris PV}
Probab=31.24 E-value=49 Score=26.04 Aligned_cols=54 Identities=13% Similarity=0.068 Sum_probs=41.4
Q ss_pred hhhhHHHHHHHHHHcccCCHHHHHHHHhhcccCCCccCHHHHHHHHHHHHhccccc
Q 010353 109 FDQQCVELVQGLLEHGRLTLKQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVE 164 (512)
Q Consensus 109 ~G~~a~~Iv~~lL~~G~l~~~~li~~~~~~~~~~~~~~~~~l~~~f~~Lv~~~fi~ 164 (512)
.++.|..|.+ +..|.-|+.+|+..+..+.+.....-..++..-+..|.+.|||.
T Consensus 41 Ln~~a~~Iw~--l~DG~rtv~eIv~~L~~~y~~~~e~i~~DV~~FL~~L~~~g~I~ 94 (95)
T 3g2b_A 41 LDDIALVVAQ--RYDGTQSLAQIAQTLAAEFDADASEIETDVIELTTTLHQKRLLR 94 (95)
T ss_dssp CCTHHHHHHH--HCCSSSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCCC
T ss_pred cCHHHHHHHH--HccCCCCHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHCcCEe
Confidence 4577888887 46999999999999887655321123467889999999999985
No 381
>2lky_A Uncharacterized protein; infectious disease, tuberculosis, DUF proteins, ssgcid, STRU genomics; NMR {Mycobacterium smegmatis str}
Probab=31.23 E-value=76 Score=25.85 Aligned_cols=53 Identities=4% Similarity=0.078 Sum_probs=40.4
Q ss_pred HHHhhhhHHHHHHHHHHcccCCHHHH---HHHHhhcccCCCccCHHHHHHHHHHHHhcccc
Q 010353 106 SQEFDQQCVELVQGLLEHGRLTLKQM---FDRAKSSEKEGNLVDLDSLRETLVKLVTAHYV 163 (512)
Q Consensus 106 ~~~~G~~a~~Iv~~lL~~G~l~~~~l---i~~~~~~~~~~~~~~~~~l~~~f~~Lv~~~fi 163 (512)
++.-.++-..|+..|...|.++-.+| |..+....+ +.++|...-..|...||=
T Consensus 39 r~Ltdeev~~Va~~L~~~~~i~~~dI~~~I~~vt~~~P-----s~eDI~RV~arLaa~GWP 94 (112)
T 2lky_A 39 RRLTNDEIKAIAEDLEKRAHFDHIDIGVLITQMTDEMP-----REEDIERVRRHLALQGWP 94 (112)
T ss_dssp TTCCHHHHHHHHHHHHHHCCCSCCCSHHHHHHHTTCCC-----CHHHHHHHHHHHHTTCCG
T ss_pred ccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhccCC-----CHHHHHHHHHHHHhcCCC
Confidence 55556778899999999998885554 444444433 788999999999999996
No 382
>3htu_A Vacuolar protein-sorting-associated protein 25; ESCRT-II, ESCRT-III, VPS20, VPS25, MVB, cytoplasm, nucleus, polymorphism, protein transport; 2.00A {Homo sapiens}
Probab=30.36 E-value=1.5e+02 Score=22.51 Aligned_cols=51 Identities=18% Similarity=0.203 Sum_probs=39.9
Q ss_pred hhHHHHHHHHHhcCC----CcHHHHHHh--------cCCCHHHHHHHHHHHHhccccceeccc
Q 010353 20 DLVAKVCECLLRKGP----LTRQNVKRY--------TELSDEQVKNALLVLIQQNCVQAFTTE 70 (512)
Q Consensus 20 ~~v~~V~~~Ll~~G~----ltl~~I~~~--------t~l~~~~Vr~aL~vLIQhn~V~~~~~~ 70 (512)
+-+..|.+..-..|. +|+.+|..- -+|+...++.||-+|.+.|=+.-|..+
T Consensus 9 eWa~~Iy~Wv~~~G~~~sV~TlyEL~~Gd~t~~~ef~gmd~~~L~kaL~~L~k~gkA~i~~~~ 71 (79)
T 3htu_A 9 EWGKLIYQWVSRSGQNNSVFTLYELTNGEDTEDEEFHGLDEATLLRALQALQQEHKAEIITVS 71 (79)
T ss_dssp HHHHHHHHHHHTTCCSCSEECHHHHHHSSTTTTSTTTTCCHHHHHHHHHHHHHTTSEEEECCT
T ss_pred HHHHHHHHHHHHcCCCCceEEEeeeccCCCCCCCcccCCCHHHHHHHHHHHHHcCCEEEEecC
Confidence 345666777777775 499999873 369999999999999999987766644
No 383
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Probab=30.33 E-value=1.7e+02 Score=26.35 Aligned_cols=32 Identities=9% Similarity=0.164 Sum_probs=30.4
Q ss_pred chhhhhhhcCCCcccHHHHHHHHhhcccceEE
Q 010353 387 ETDKISDTTFVEKKDAPKILYKLWKDGYLLME 418 (512)
Q Consensus 387 eek~i~~~ami~~k~~r~~Ly~L~~~g~v~~Q 418 (512)
.+++||+...++...+-.+|.+|.++|+|..+
T Consensus 195 t~~~lA~~lG~sr~tvsR~l~~L~~~GlI~~~ 226 (243)
T 3la7_A 195 SHQAIAEAIGSTRVTVTRLLGDLREKKMISIH 226 (243)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CHHHHHHHHCCcHHHHHHHHHHHHHCCCEEEc
Confidence 89999999999999999999999999999764
No 384
>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*
Probab=30.08 E-value=1.2e+02 Score=29.53 Aligned_cols=44 Identities=20% Similarity=0.175 Sum_probs=38.5
Q ss_pred HHHHHHhc-CCCcHHHHHHhcCCCHHHHHHHHHHHHhccccceec
Q 010353 25 VCECLLRK-GPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFT 68 (512)
Q Consensus 25 V~~~Ll~~-G~ltl~~I~~~t~l~~~~Vr~aL~vLIQhn~V~~~~ 68 (512)
|+..|... |++|..+|+..+++++..++.-|-.|.-++++....
T Consensus 33 lfd~L~~~~~p~t~~eLA~~~g~~~~~l~rlLr~L~~~gll~~~~ 77 (353)
T 4a6d_A 33 VFDLLAEAPGPLDVAAVAAGVRASAHGTELLLDICVSLKLLKVET 77 (353)
T ss_dssp HHHHHHHSSSCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHhcCCCCCCHHHHHHhhCcCHHHHHHHHHHHHHCCCEEEec
Confidence 67778765 789999999999999999999999999999997433
No 385
>3ri2_A Transcriptional regulator, PADR-like family; PSI-biology, midwest center for structural genomics, MCSG, transcription regulator; 2.10A {Eggerthella lenta} PDB: 4ejo_A
Probab=30.07 E-value=1.9e+02 Score=23.61 Aligned_cols=66 Identities=15% Similarity=0.103 Sum_probs=47.3
Q ss_pred chhHHHHHHHHHhcCCCcHHHHHHh-----cCCCHHHHHHHHHHHHhccccceecccCCCCCCCCCCCccEEEechhhH
Q 010353 19 GDLVAKVCECLLRKGPLTRQNVKRY-----TELSDEQVKNALLVLIQQNCVQAFTTEQPDGFADGPKANTQYVVLFDNI 92 (512)
Q Consensus 19 G~~v~~V~~~Ll~~G~ltl~~I~~~-----t~l~~~~Vr~aL~vLIQhn~V~~~~~~~~~~~~~~~~~~~~Y~~~~~~i 92 (512)
|.+--.|-..|. |+.+-.+|.+. .++++..|-..|--|.+.|+|....... + ++...+|++-..+-
T Consensus 20 g~l~~~IL~lL~--~p~~GYei~~~l~~~~~~is~gtlY~~L~rLe~~GlI~~~~~~~-~-----~~~rk~Y~LT~~Gr 90 (123)
T 3ri2_A 20 GTLVMLVLSQLR--EPAYGYALVKSLADHGIPIEANTLYPLMRRLESQGLLASEWDNG-G-----SKPRKYYRTTDEGL 90 (123)
T ss_dssp HHHHHHHHHHTT--SCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSEEEEEEEC-S-----SCEEEEEEECHHHH
T ss_pred CcHHHHHHHHHc--CCCCHHHHHHHHHHhCCCCCcchHHHHHHHHHHCCCEEEEeccC-C-----CCCceEEEECHHHH
Confidence 455555555554 88888888777 4899999999999999999998443221 1 12356898887663
No 386
>1j5y_A Transcriptional regulator, biotin repressor famil; structural genomics, TM1602, BIOT repressor family, JCSG, conserved hypothetical protein; 2.30A {Thermotoga maritima} SCOP: a.4.5.1 d.94.2.1
Probab=30.04 E-value=65 Score=28.41 Aligned_cols=45 Identities=11% Similarity=0.172 Sum_probs=38.5
Q ss_pred hHHHHHHHHHhcC-CCcHHHHHHhcCCCHHHHHHHHHHHHhccc-cc
Q 010353 21 LVAKVCECLLRKG-PLTRQNVKRYTELSDEQVKNALLVLIQQNC-VQ 65 (512)
Q Consensus 21 ~v~~V~~~Ll~~G-~ltl~~I~~~t~l~~~~Vr~aL~vLIQhn~-V~ 65 (512)
--.+|...|...| +.|..+|++..+++.+.|+.=|-.|-+.|+ +.
T Consensus 22 R~~~Il~~L~~~~~~~s~~eLa~~l~vS~~Ti~rdi~~L~~~G~~I~ 68 (187)
T 1j5y_A 22 RLKSIVRILERSKEPVSGAQLAEELSVSRQVIVQDIAYLRSLGYNIV 68 (187)
T ss_dssp HHHHHHHHHHHCSSCBCHHHHHHHHTSCHHHHHHHHHHHHHHTCCCE
T ss_pred HHHHHHHHHHHcCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEE
Confidence 3456777887654 599999999999999999999999999998 64
No 387
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A
Probab=30.02 E-value=1.4e+02 Score=25.78 Aligned_cols=51 Identities=24% Similarity=0.307 Sum_probs=39.7
Q ss_pred HhCchHHHHHHHHHh----cC----------CCcchhhhhhhcCCCcccHHHHHHHHhhcccceEE
Q 010353 367 RYGRDAYRIFRLLSK----SG----------RLLETDKISDTTFVEKKDAPKILYKLWKDGYLLME 418 (512)
Q Consensus 367 ~~G~~~~Ri~r~l~~----~~----------~l~eek~i~~~ami~~k~~r~~Ly~L~~~g~v~~Q 418 (512)
.+...--|+.++|.. .| .+ .+++||+...++...+-.+|.+|.++|+|...
T Consensus 108 ~~~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~~-t~~~lA~~lg~sr~tvsR~l~~L~~~g~I~~~ 172 (195)
T 3b02_A 108 QTGELRARIARYLLFLADTPLSARDRQGIYVTV-SHEEIADATASIRESVSKVLADLRREGLIATA 172 (195)
T ss_dssp TSSCHHHHHHHHHHHHTTSTTEEEETTEEEEEC-CHHHHHHTTTSCHHHHHHHHHHHHHHTSEEEE
T ss_pred hcCCHHHHHHHHHHHHHHHcCCCCCCCeeeccC-CHHHHHHHhCCCHHHHHHHHHHHHHCCCEEec
Confidence 445555666666654 11 24 88999999999999999999999999999654
No 388
>1hsj_A Fusion protein consisting of staphylococcus accessary regulator protein R and maltose...; novel fold for DNA binding; HET: GLC; 2.30A {Escherichia coli} SCOP: a.4.5.28 c.94.1.1
Probab=30.01 E-value=31 Score=35.33 Aligned_cols=63 Identities=13% Similarity=0.174 Sum_probs=49.6
Q ss_pred hHHHHHHHHHhc--CCCcchhhhhhhcCCCcccHHHHHHHHhhcccceEEEEecCCCCCceEEEEEEeh
Q 010353 371 DAYRIFRLLSKS--GRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTGARQSQFLLWKVNR 437 (512)
Q Consensus 371 ~~~Ri~r~l~~~--~~l~eek~i~~~ami~~k~~r~~Ly~L~~~g~v~~QEvpk~~~~~~t~~lw~v~~ 437 (512)
.=.+|++.|..+ +.+ .+++|++...++...+=.++-+|.+.|||.=+.-| ...|.++++--+.
T Consensus 405 ~q~~vl~~l~~~~~~~~-~~~~l~~~~~~~~~~~t~~~~~le~~g~v~r~~~~---~D~R~~~i~lT~~ 469 (487)
T 1hsj_A 405 EEIYILNHILRSESNEI-SSKEIAKCSEFKPYYLTKALQKLKDLKLLSKKRSL---QDERTVIVYVTDT 469 (487)
T ss_dssp HHHHHHHHHHTCSCSEE-EHHHHHHSSCCCHHHHHHHHHHHHTTTTSCCEECC---SSSSCCEEECCSS
T ss_pred HHHHHHHHHHhCCCCCc-CHHHHHHHHCCCHHHHHHHHHHHHHCCCEeecCCC---CCCCeEEEEECHH
Confidence 346889999887 778 99999999999999999999999999999433222 4567666665443
No 389
>3k4g_A DNA-directed RNA polymerase subunit alpha; bacterial transcription regulation, DNA-directed RNA polymer nucleotidyltransferase; HET: MLY; 2.05A {Escherichia coli k-12} SCOP: a.60.3.1 PDB: 3n4m_B* 1lb2_B* 3n97_B* 1xs9_D
Probab=29.87 E-value=72 Score=24.69 Aligned_cols=46 Identities=15% Similarity=0.216 Sum_probs=40.5
Q ss_pred hhHHHHHHHHHhcCCCcHHHHHHhc--------CCCHHHHHHHHHHHHhccccc
Q 010353 20 DLVAKVCECLLRKGPLTRQNVKRYT--------ELSDEQVKNALLVLIQQNCVQ 65 (512)
Q Consensus 20 ~~v~~V~~~Ll~~G~ltl~~I~~~t--------~l~~~~Vr~aL~vLIQhn~V~ 65 (512)
++..+...||-+.|=-|+.+|++.+ ++..+.+....-.|-++|+-.
T Consensus 18 ~LSvRa~NcLkragI~Tv~dL~~~se~dLlki~n~G~KSl~EI~~~L~~~GL~~ 71 (86)
T 3k4g_A 18 ELTVRSANCLXAEAIHYIGDLVQRTEVELLXTPNLGXXSLTEIXDVLASRGLSL 71 (86)
T ss_dssp CCCHHHHHHHHHTTCCBHHHHHHSCHHHHHTSTTCCHHHHHHHHHHHHTTTCCS
T ss_pred CCCHHHHHHHHHcCCCcHHHHHhCCHHHHhhccccCcccHHHHHHHHHHcCCCc
Confidence 5678999999999999999999875 588899999999999999754
No 390
>3f8b_A Transcriptional regulator, PADR-like family; winged helix turn helix, transcription regulator; 2.00A {Lactococcus lactis subsp} SCOP: a.4.5.0 PDB: 3f8c_A* 3f8f_A*
Probab=29.86 E-value=1.5e+02 Score=23.86 Aligned_cols=52 Identities=10% Similarity=0.153 Sum_probs=38.4
Q ss_pred HHHHHHHHcccCCHHHHHHHHhhcccCCCccCHHHHHHHHHHHHhccccccc
Q 010353 115 ELVQGLLEHGRLTLKQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERC 166 (512)
Q Consensus 115 ~Iv~~lL~~G~l~~~~li~~~~~~~~~~~~~~~~~l~~~f~~Lv~~~fi~rv 166 (512)
.++-.+|..|-...-++.+.+.......-..+...+..++.+|.++|||.+.
T Consensus 15 ~~IL~~L~~~~~~Gyei~~~l~~~~~~~~~i~~gtly~~L~rLe~~GlI~~~ 66 (116)
T 3f8b_A 15 VILLNVLKQGDNYVYGIIKQVKEASNGEMELNEATLYTIFKRLEKDGIISSY 66 (116)
T ss_dssp HHHHHHHHHCCBCHHHHHHHHHHHTTTCCCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHCCCEEEE
Confidence 3445566679999999988876532111124788999999999999999886
No 391
>2obp_A Putative DNA-binding protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.70A {Ralstonia eutropha} SCOP: a.4.5.71
Probab=29.79 E-value=60 Score=25.68 Aligned_cols=34 Identities=15% Similarity=0.101 Sum_probs=31.7
Q ss_pred CCCcchhhhhhhcCCCcccHHHHHHHHhhcccceE
Q 010353 383 GRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLM 417 (512)
Q Consensus 383 ~~l~eek~i~~~ami~~k~~r~~Ly~L~~~g~v~~ 417 (512)
+.+ ...+|++...|+.......|-+|.+.|||..
T Consensus 35 ~~~-s~~eLa~~l~l~~stLsR~l~rLe~~GLV~r 68 (96)
T 2obp_A 35 TPW-SLPKIAKRAQLPMSVLRRVLTQLQAAGLADV 68 (96)
T ss_dssp CCC-BHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred CCc-CHHHHHHHhCCchhhHHHHHHHHHHCCCEEe
Confidence 456 9999999999999999999999999999975
No 392
>3l09_A Putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG, protein structure initiative transcription regulator; 2.81A {Jannaschia SP}
Probab=29.59 E-value=1.2e+02 Score=28.73 Aligned_cols=53 Identities=9% Similarity=0.000 Sum_probs=39.7
Q ss_pred HHhc-CCCcHHHHHHh---cCCCHHHHHHHHHHHHhccccceecccCCCCCCCCCCCccEEEechhh
Q 010353 29 LLRK-GPLTRQNVKRY---TELSDEQVKNALLVLIQQNCVQAFTTEQPDGFADGPKANTQYVVLFDN 91 (512)
Q Consensus 29 Ll~~-G~ltl~~I~~~---t~l~~~~Vr~aL~vLIQhn~V~~~~~~~~~~~~~~~~~~~~Y~~~~~~ 91 (512)
+..+ |.+++..|++. .+++...||.||.-|.+.|.+.. ... + + ..+|.+....
T Consensus 36 ~~~~g~~i~~~~Li~l~~~~Gi~~~avR~Al~RL~~~G~l~~-~~~--G------r-~~~Y~Lt~~g 92 (266)
T 3l09_A 36 SRDGVIEVSGVALSSFVERMGLQPQAMRVALHRLKRDGWVES-RRL--G------R-VGFHRLSDSA 92 (266)
T ss_dssp HHTTCCCEEHHHHHHHHHHTTCCHHHHHHHHHHHHHTTSEEE-EEE--T------T-EEEEEECHHH
T ss_pred hccCCCcccHHHHHHHHHHcCCCchHHHHHHHHHHHCCCeee-eec--C------C-cceEEECHHH
Confidence 3455 57899997765 78999999999999999999973 322 1 2 3588887554
No 393
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=29.53 E-value=1e+02 Score=26.91 Aligned_cols=32 Identities=9% Similarity=0.237 Sum_probs=30.1
Q ss_pred chhhhhhhcCCCcccHHHHHHHHhhcccceEE
Q 010353 387 ETDKISDTTFVEKKDAPKILYKLWKDGYLLME 418 (512)
Q Consensus 387 eek~i~~~ami~~k~~r~~Ly~L~~~g~v~~Q 418 (512)
..++||+...++...+-.+|.+|.++|+|..+
T Consensus 165 t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~~ 196 (216)
T 4ev0_A 165 RHHELAALAGTSRETVSRVLHALAEEGVVRLG 196 (216)
T ss_dssp CHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEE
T ss_pred CHHHHHHHhCCCHHHHHHHHHHHHHCCCEEec
Confidence 89999999999999999999999999999653
No 394
>4ham_A LMO2241 protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, winged helix-turn-helix, four helix bundle; 1.91A {Listeria monocytogenes}
Probab=29.50 E-value=65 Score=26.71 Aligned_cols=34 Identities=12% Similarity=0.152 Sum_probs=30.6
Q ss_pred CcchhhhhhhcCCCcccHHHHHHHHhhcccceEE
Q 010353 385 LLETDKISDTTFVEKKDAPKILYKLWKDGYLLME 418 (512)
Q Consensus 385 l~eek~i~~~ami~~k~~r~~Ly~L~~~g~v~~Q 418 (512)
|-++.+|++.-.++...+|+.+..|..+|+|...
T Consensus 38 LPser~La~~~gVSr~tVReAl~~L~~eGlv~~~ 71 (134)
T 4ham_A 38 ILSIREFASRIGVNPNTVSKAYQELERQEVIITV 71 (134)
T ss_dssp ECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CccHHHHHHHHCCCHHHHHHHHHHHHHCCcEEEE
Confidence 4378899999999999999999999999999544
No 395
>3ihu_A Transcriptional regulator, GNTR family; YP_298823.1, DNA binding protein, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.92A {Ralstonia eutropha}
Probab=29.18 E-value=41 Score=30.47 Aligned_cols=32 Identities=19% Similarity=0.222 Sum_probs=30.7
Q ss_pred CCcHHHHHHhcCCCHHHHHHHHHHHHhccccc
Q 010353 34 PLTRQNVKRYTELSDEQVKNALLVLIQQNCVQ 65 (512)
Q Consensus 34 ~ltl~~I~~~t~l~~~~Vr~aL~vLIQhn~V~ 65 (512)
++|-.+|+...++|...||.||..|.+.|+|.
T Consensus 39 ~L~E~~La~~lgVSRtpVREAl~~L~~eGlv~ 70 (222)
T 3ihu_A 39 RLVETDLVAHFGVGRNSVREALQRLAAEGIVD 70 (222)
T ss_dssp EECHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred ccCHHHHHHHHCCCHHHHHHHHHHHHHCCCEE
Confidence 78889999999999999999999999999998
No 396
>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*
Probab=28.87 E-value=61 Score=31.17 Aligned_cols=40 Identities=13% Similarity=0.163 Sum_probs=36.3
Q ss_pred HHHHHHhcCCCcHHHHHHhcCCCHHHHHHHHHHHHhccccc
Q 010353 25 VCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQ 65 (512)
Q Consensus 25 V~~~Ll~~G~ltl~~I~~~t~l~~~~Vr~aL~vLIQhn~V~ 65 (512)
|+..|- .|+.|..+|+..+++++..++.-|-.|..+|++.
T Consensus 30 lf~~l~-~g~~t~~elA~~~~~~~~~l~rlLr~l~~~gl~~ 69 (332)
T 3i53_A 30 VADHIA-AGHRTAAEIASAAGAHADSLDRLLRHLVAVGLFT 69 (332)
T ss_dssp HHHHHH-TTCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred hHHHHh-cCCCCHHHHHHHHCcCHHHHHHHHHHHHhCCcEE
Confidence 666664 5899999999999999999999999999999997
No 397
>2esh_A Conserved hypothetical protein TM0937; APC5794, structural genomics, PSI, protein structure initiative; 2.30A {Thermotoga maritima} SCOP: a.4.5.61
Probab=28.57 E-value=98 Score=24.94 Aligned_cols=64 Identities=8% Similarity=0.038 Sum_probs=45.2
Q ss_pred hHHHHHHHHHhcCCCcHHHHHHhc------C--CCH-HHHHHHHHHHHhccccceecccCCCCCCCCCCCccEEEechhh
Q 010353 21 LVAKVCECLLRKGPLTRQNVKRYT------E--LSD-EQVKNALLVLIQQNCVQAFTTEQPDGFADGPKANTQYVVLFDN 91 (512)
Q Consensus 21 ~v~~V~~~Ll~~G~ltl~~I~~~t------~--l~~-~~Vr~aL~vLIQhn~V~~~~~~~~~~~~~~~~~~~~Y~~~~~~ 91 (512)
+--.|-..| ..|+.+-.+|.+.. . +++ ..|-..|-.|.+.|+|.....+. ++ +...+|++-..+
T Consensus 14 ~~~~IL~~L-~~~~~~gyel~~~l~~~g~~~~~is~~~tly~~L~~Le~~GlI~~~~~~~-~~-----~~r~~Y~LT~~G 86 (118)
T 2esh_A 14 LASTILLLV-AEKPSHGYELAERLAEFGIEIPGIGHMGNIYRVLADLEESGFLSTEWDTT-VS-----PPRKIYRITPQG 86 (118)
T ss_dssp HHHHHHHHH-HHSCBCHHHHHHHHHTTCCSSTTCCCCCCHHHHHHHHHHTTSEEEEEECS-SS-----SCEEEEEECHHH
T ss_pred HHHHHHHHH-HcCCCCHHHHHHHHHHhCCcccCCCCcchHHHHHHHHHHCCCeEEEeecC-CC-----CCceEEEEChHH
Confidence 334455555 55888999998776 3 899 99999999999999998443321 21 225678887655
No 398
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}
Probab=28.42 E-value=2e+02 Score=24.74 Aligned_cols=53 Identities=15% Similarity=0.189 Sum_probs=41.9
Q ss_pred HHHhCchHHHHHHHHHhcC--------------CCcchhhhhhhcCCCcccHHHHHHHHhhcccceEE
Q 010353 365 SKRYGRDAYRIFRLLSKSG--------------RLLETDKISDTTFVEKKDAPKILYKLWKDGYLLME 418 (512)
Q Consensus 365 ~~~~G~~~~Ri~r~l~~~~--------------~l~eek~i~~~ami~~k~~r~~Ly~L~~~g~v~~Q 418 (512)
.-.+...--|+.++|..-. .+ .+++||+...++...+-.+|.+|.++|+|...
T Consensus 113 ~~~~~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~~-t~~~lA~~lg~sr~tvsR~l~~L~~~g~I~~~ 179 (202)
T 2zcw_A 113 RLATQRLKNRMAAALLELSETPLAHEEEGKVVLKA-THDELAAAVGSVRETVTKVIGELAREGYIRSG 179 (202)
T ss_dssp HHHHCCHHHHHHHHHHHHTTSTTEEEETTEEEEEC-CHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHhcCCHHHHHHHHHHHHHHhcCCCCCCcEEccCC-CHHHHHHHhCCCHHHHHHHHHHHHHCCCEEeC
Confidence 3345666677777776521 14 88999999999999999999999999999643
No 399
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}
Probab=28.26 E-value=1.4e+02 Score=26.30 Aligned_cols=54 Identities=17% Similarity=0.185 Sum_probs=44.9
Q ss_pred HHHHhhhchhHHHHHHHHHhc------------CCCcHHHHHHhcCCCHHHHHHHHHHHHhccccc
Q 010353 12 HVITNHFGDLVAKVCECLLRK------------GPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQ 65 (512)
Q Consensus 12 ~iv~~~FG~~v~~V~~~Ll~~------------G~ltl~~I~~~t~l~~~~Vr~aL~vLIQhn~V~ 65 (512)
.+..-.+.+.-.+++.+|+.. -++|..+|+...|+++..|-..|--|.+.|++.
T Consensus 144 ~~~~~~~~~~~~Rl~~~L~~~~~~~~~~~~~~~~~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~ 209 (227)
T 3dkw_A 144 EIETLSLKNATHRVVRYLLTLAAHAPGENCRVEIPVAKQLVAGHLSIQPETFSRIMHRLGDEGIIH 209 (227)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCSSSSSCCCCCCCSCTHHHHHHTTSCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHHhcCCHHHHHHHHHHHhhhhcCCCCeEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHCCcEE
Confidence 344455678889999988652 145778999999999999999999999999997
No 400
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*
Probab=28.10 E-value=2.1e+02 Score=25.12 Aligned_cols=31 Identities=13% Similarity=0.262 Sum_probs=29.6
Q ss_pred chhhhhhhcCCCcccHHHHHHHHhhcccceE
Q 010353 387 ETDKISDTTFVEKKDAPKILYKLWKDGYLLM 417 (512)
Q Consensus 387 eek~i~~~ami~~k~~r~~Ly~L~~~g~v~~ 417 (512)
.+++||+...++...+-.+|.+|.++|+|..
T Consensus 179 t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~ 209 (227)
T 3d0s_A 179 TQEEIAQLVGASRETVNKALADFAHRGWIRL 209 (227)
T ss_dssp CHHHHHHHHTSCHHHHHHHHHHHHHTTSEEE
T ss_pred CHHHHHHHhCCcHHHHHHHHHHHHHCCCEEe
Confidence 8999999999999999999999999999965
No 401
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=28.00 E-value=1.2e+02 Score=24.95 Aligned_cols=45 Identities=9% Similarity=0.124 Sum_probs=34.6
Q ss_pred HHHHhhhchhHHHHHHHHHhcCCCcHHHHHHhcCCCHHHHHHHHHHH
Q 010353 12 HVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVL 58 (512)
Q Consensus 12 ~iv~~~FG~~v~~V~~~Ll~~G~ltl~~I~~~t~l~~~~Vr~aL~vL 58 (512)
..+.+.+.+.-..|+. + ....+|..+|+..+++|.+.|+..+.-.
T Consensus 104 ~~l~~~L~~~~r~v~~-~-~~~g~s~~EIA~~lgis~~tV~~~~~ra 148 (164)
T 3mzy_A 104 KFSENNFSKFEKEVLT-Y-LIRGYSYREIATILSKNLKSIDNTIQRI 148 (164)
T ss_dssp HHHHHHSCHHHHHHHH-H-HTTTCCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHhhCCHHHHHHHH-H-HHcCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 3444577788888888 5 4455699999999999999988766543
No 402
>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A
Probab=27.84 E-value=2.2e+02 Score=25.41 Aligned_cols=33 Identities=12% Similarity=0.269 Sum_probs=30.1
Q ss_pred cchhhhhhhcCCCc-ccHHHHHHHHhhcccceEE
Q 010353 386 LETDKISDTTFVEK-KDAPKILYKLWKDGYLLME 418 (512)
Q Consensus 386 ~eek~i~~~ami~~-k~~r~~Ly~L~~~g~v~~Q 418 (512)
+.+++||+...++. ..+-.+|.+|.++|+|...
T Consensus 170 ~t~~~lA~~lG~sr~etvsR~l~~l~~~glI~~~ 203 (238)
T 2bgc_A 170 LTMQELGYSSGIAHSSAVSRIISKLKQEKVIVYK 203 (238)
T ss_dssp CCHHHHHHHTTCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCHHHHHHHhCCChHHHHHHHHHHHHHCCCEEec
Confidence 38999999999999 7999999999999999554
No 403
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli}
Probab=27.63 E-value=95 Score=28.48 Aligned_cols=55 Identities=25% Similarity=0.267 Sum_probs=46.5
Q ss_pred HHHHHhhhchhHHHHHHHHHhc----C----------CCcHHHHHHhcCCCHHHHHHHHHHHHhccccc
Q 010353 11 VHVITNHFGDLVAKVCECLLRK----G----------PLTRQNVKRYTELSDEQVKNALLVLIQQNCVQ 65 (512)
Q Consensus 11 ~~iv~~~FG~~v~~V~~~Ll~~----G----------~ltl~~I~~~t~l~~~~Vr~aL~vLIQhn~V~ 65 (512)
..+..-.+.+..++|+.+|+.. | ++|..+|+..+|+++..|-..|--|.+.|++.
T Consensus 180 ~~~~~l~~~~~~~Rla~~Ll~l~~~~~~~~~~~~~~l~lt~~~lA~~lG~sr~tvsR~l~~L~~~GlI~ 248 (260)
T 3kcc_A 180 EKVGNLAFLLVTGRIAQTLLNLAKQPDAMTHPDGMQIKITRQEIGQIVGCSRETVGRILKMLEDQNLIS 248 (260)
T ss_dssp HHHHHHHHCCHHHHHHHHHHHHHTSTTCEEETTEEEEECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCCceeecCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEE
Confidence 3445556788899999998752 2 57889999999999999999999999999997
No 404
>2kvc_A Putative uncharacterized protein; structural genomics, seattle structural genomi for infectious disease, ssgcid, unknown function; NMR {Mycobacterium tuberculosis}
Probab=27.61 E-value=79 Score=25.35 Aligned_cols=63 Identities=8% Similarity=0.073 Sum_probs=43.9
Q ss_pred hhHHHHHHHHhhhhHHHHHHHHHHcccCCHHHHHHHHhhcccCCCccCHHHHHHHHHHHHhcccc
Q 010353 99 AKFLTILSQEFDQQCVELVQGLLEHGRLTLKQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYV 163 (512)
Q Consensus 99 pr~l~~i~~~~G~~a~~Iv~~lL~~G~l~~~~li~~~~~~~~~~~~~~~~~l~~~f~~Lv~~~fi 163 (512)
|.+-.+-++.-.++-..|+..|...|.++-.+|-..+..-.. ...+.++|...-..|...||=
T Consensus 30 PLlALL~r~Ltdeev~~Va~~L~~~~~i~~~dI~~~I~~vt~--~~Ps~eDI~RV~arLaa~GWP 92 (103)
T 2kvc_A 30 AVLALLCRRLSHDEVKAVANELMRLGDFDQIDIGVVITHFTD--ELPSPEDVERVRARLAAQGWP 92 (103)
T ss_dssp HHHHHHTTTSCHHHHHHHHHHHHHHTSSCSSCHHHHHHSCCS--SCSCHHHHHHHHHHHGGGCCC
T ss_pred HHHHHHhccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhc--cCCCHHHHHHHHHHHHhcCCC
Confidence 333333355556778899999999998886666555443111 123788999999999999994
No 405
>3c7j_A Transcriptional regulator, GNTR family; structural genomics, PSI-2, protein structure initiative, midwest center for STR genomics; HET: MSE; 2.10A {Pseudomonas syringae PV}
Probab=27.59 E-value=47 Score=30.66 Aligned_cols=33 Identities=24% Similarity=0.244 Sum_probs=31.5
Q ss_pred CCCcHHHHHHhcCCCHHHHHHHHHHHHhccccc
Q 010353 33 GPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQ 65 (512)
Q Consensus 33 G~ltl~~I~~~t~l~~~~Vr~aL~vLIQhn~V~ 65 (512)
++++..+|+...+++...||.||..|.+.|+|.
T Consensus 48 ~~L~e~~La~~lgVSr~~VReAL~~L~~~Glv~ 80 (237)
T 3c7j_A 48 TALRQQELATLFGVSRMPVREALRQLEAQSLLR 80 (237)
T ss_dssp CBCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEE
T ss_pred CeeCHHHHHHHHCCCHHHHHHHHHHHHHCCCEE
Confidence 478999999999999999999999999999997
No 406
>1hsj_A Fusion protein consisting of staphylococcus accessary regulator protein R and maltose...; novel fold for DNA binding; HET: GLC; 2.30A {Escherichia coli} SCOP: a.4.5.28 c.94.1.1
Probab=27.58 E-value=68 Score=32.68 Aligned_cols=42 Identities=14% Similarity=0.259 Sum_probs=39.7
Q ss_pred HHHHHHHhc--CCCcHHHHHHhcCCCHHHHHHHHHHHHhccccc
Q 010353 24 KVCECLLRK--GPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQ 65 (512)
Q Consensus 24 ~V~~~Ll~~--G~ltl~~I~~~t~l~~~~Vr~aL~vLIQhn~V~ 65 (512)
.|-.+|..+ |++|..+|++.+++++..|-..|-.|.+.|+|.
T Consensus 408 ~vl~~l~~~~~~~~~~~~l~~~~~~~~~~~t~~~~~le~~g~v~ 451 (487)
T 1hsj_A 408 YILNHILRSESNEISSKEIAKCSEFKPYYLTKALQKLKDLKLLS 451 (487)
T ss_dssp HHHHHHHTCSCSEEEHHHHHHSSCCCHHHHHHHHHHHHTTTTSC
T ss_pred HHHHHHHhCCCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEe
Confidence 577888888 999999999999999999999999999999997
No 407
>2zfw_A PEX; five alpha-helices + one beta-sheet, circadian clock protein; 2.90A {Synechococcus SP}
Probab=27.17 E-value=1.4e+02 Score=25.42 Aligned_cols=60 Identities=17% Similarity=0.189 Sum_probs=42.0
Q ss_pred HHHhcCCCcHHHHHHhc-------CCCHHHHHHHHHHHHhccccceecccCCCCCCCCCCCccEEEechhh
Q 010353 28 CLLRKGPLTRQNVKRYT-------ELSDEQVKNALLVLIQQNCVQAFTTEQPDGFADGPKANTQYVVLFDN 91 (512)
Q Consensus 28 ~Ll~~G~ltl~~I~~~t-------~l~~~~Vr~aL~vLIQhn~V~~~~~~~~~~~~~~~~~~~~Y~~~~~~ 91 (512)
.++..|+..-.+|.+.. +++...|..+|-.|.+.|+|.......+++ .+...+|++-..+
T Consensus 51 ~lL~~~p~~GYeI~k~l~~~~~~~~is~gtLYp~L~rLE~~GlI~~~~~~~~~~----g~~rk~Y~LT~~G 117 (148)
T 2zfw_A 51 AVLRHEDSYGTELIQHLETHWPNYRLSDTVLYTALKFLEDEQIISGYWKKVEGR----GRPRRMYQLAQAN 117 (148)
T ss_dssp HHHTTCCEEHHHHHHHHHHHCTTEECCSHHHHHHHHHHHHTSSEEEECCCCTTS----SCCCCEEEESSSS
T ss_pred HHHHhCCCcHHHHHHHHHHHcCCCCCChhHHHHHHHHHHHCCCEEEEeeccCCC----CCCcEEEEECHHH
Confidence 34456888888887653 589999999999999999998443322111 1224689888665
No 408
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2
Probab=26.97 E-value=2.2e+02 Score=24.38 Aligned_cols=32 Identities=13% Similarity=0.196 Sum_probs=30.1
Q ss_pred chhhhhhhcCCCcccHHHHHHHHhhcccceEE
Q 010353 387 ETDKISDTTFVEKKDAPKILYKLWKDGYLLME 418 (512)
Q Consensus 387 eek~i~~~ami~~k~~r~~Ly~L~~~g~v~~Q 418 (512)
.+++||+...++...+-.+|.+|.++|+|...
T Consensus 166 t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~~ 197 (207)
T 2oz6_A 166 TRQEIGRIVGCSREMVGRVLKSLEEQGLVHVK 197 (207)
T ss_dssp CHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEE
T ss_pred CHHHHHHHhCCCHHHHHHHHHHHHHCCCEEec
Confidence 88999999999999999999999999999654
No 409
>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}
Probab=26.94 E-value=66 Score=31.54 Aligned_cols=57 Identities=18% Similarity=0.113 Sum_probs=46.4
Q ss_pred HHHHHHHhhhchhHHHH---------HHHHHh-cCCCcHHHHHHhcCCCHHHHHHHHHHHHhccccc
Q 010353 9 HAVHVITNHFGDLVAKV---------CECLLR-KGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQ 65 (512)
Q Consensus 9 Lc~~iv~~~FG~~v~~V---------~~~Ll~-~G~ltl~~I~~~t~l~~~~Vr~aL~vLIQhn~V~ 65 (512)
-+..+.+-.||+....+ +..|-. .|+.|+.+|+..+++++..++.-|-.|.-.|++.
T Consensus 15 a~~~l~~l~~g~~~~~~l~~a~~lgifd~L~~~~~~~t~~eLA~~~g~~~~~l~rlLr~l~~~g~l~ 81 (363)
T 3dp7_A 15 AQRLAQEIAFGPVVFQVSRLMLKFGIFQLLSGKREGYTLQEISGRTGLTRYAAQVLLEASLTIGTIL 81 (363)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHTCTTCBCHHHHHHHHTCCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHhCHHHHHHhcCCCCCHHHHHHHhCcCHHHHHHHHHHHhhCCCeE
Confidence 34556677778776654 455555 4899999999999999999999999999999996
No 410
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=26.87 E-value=1.6e+02 Score=26.51 Aligned_cols=52 Identities=21% Similarity=0.219 Sum_probs=40.0
Q ss_pred HHhCchHHHHHHHHHh----c-----------CCCcchhhhhhhcCCCcccHHHHHHHHhhcccceEE
Q 010353 366 KRYGRDAYRIFRLLSK----S-----------GRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLME 418 (512)
Q Consensus 366 ~~~G~~~~Ri~r~l~~----~-----------~~l~eek~i~~~ami~~k~~r~~Ly~L~~~g~v~~Q 418 (512)
-.+...-.||.++|.. . -.+ ..++||+...++...+-.+|.+|.++|+|...
T Consensus 144 ~~~~~~~~Rl~~~L~~l~~~~~~~~~~~~~i~~~~-t~~~iA~~lG~sr~tvsR~l~~L~~~g~I~~~ 210 (250)
T 3e6c_C 144 MNTYNPTIRILRLFYELCSSQGKRVGDTYEITMPL-SQKSIGEITGVHHVTVSRVLASLKRENILDKK 210 (250)
T ss_dssp HTTSCHHHHHHHHHHHHHHHHCEEETTEEEEECCC-CHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEC
T ss_pred HhcCCHHHHHHHHHHHHHHHhCCCCCCCcEecCCC-CHHHHHHHhCCcHHHHHHHHHHHHHCCCeEeC
Confidence 3445555666666643 1 145 89999999999999999999999999999553
No 411
>1yg2_A Gene activator APHA; virulence factor, winged helix, transcripti factor, transcription; 2.20A {Vibrio cholerae} SCOP: a.4.5.61
Probab=26.77 E-value=1.1e+02 Score=26.66 Aligned_cols=52 Identities=12% Similarity=-0.068 Sum_probs=38.2
Q ss_pred HHHHHHHcccCCHHHHHHHHhhcccCCCccCHHHHHHHHHHHHhcccccccC
Q 010353 116 LVQGLLEHGRLTLKQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCP 167 (512)
Q Consensus 116 Iv~~lL~~G~l~~~~li~~~~~~~~~~~~~~~~~l~~~f~~Lv~~~fi~rv~ 167 (512)
+|-.+|..|-++..++.+.+.......-..+...+..++.+|.++|||.+..
T Consensus 6 ~iL~lL~~~~~~gyel~~~l~~~~~~~~~~s~~~ly~~L~~Le~~GlI~~~~ 57 (179)
T 1yg2_A 6 VILTVLSTRDATGYDITKEFSASIGYFWKASHQQVYRELNKMGEQGLVTCVL 57 (179)
T ss_dssp HHHHHHHHCCBCHHHHHHHHTTGGGGTCCCCHHHHHHHHHHHHHTTSEEECC
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHhCCccCCCcCcHHHHHHHHHHCCCeEEEe
Confidence 3445555699999999988754322111347889999999999999998763
No 412
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=26.75 E-value=62 Score=28.89 Aligned_cols=32 Identities=19% Similarity=0.224 Sum_probs=30.0
Q ss_pred chhhhhhhcCCCcccHHHHHHHHhhcccceEE
Q 010353 387 ETDKISDTTFVEKKDAPKILYKLWKDGYLLME 418 (512)
Q Consensus 387 eek~i~~~ami~~k~~r~~Ly~L~~~g~v~~Q 418 (512)
.+++||+...++...+-.+|.+|.++|+|..+
T Consensus 177 t~~~iA~~lg~sr~tvsR~l~~L~~~g~I~~~ 208 (231)
T 3e97_A 177 GTQDIMARTSSSRETVSRVLKRLEAHNILEVS 208 (231)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEC
T ss_pred CHHHHHHHhCCcHHHHHHHHHHHHHCCcEEec
Confidence 89999999999999999999999999999643
No 413
>3hrs_A Metalloregulator SCAR; DTXR/MNTR family member, transcription; 2.70A {Streptococcus gordonii} PDB: 3hrt_A 3hru_A
Probab=26.41 E-value=29 Score=31.57 Aligned_cols=43 Identities=14% Similarity=0.344 Sum_probs=35.5
Q ss_pred HHHHHHhcCCCcchhhhhhhcCCCcccHHHHHHHHhhcccceEE
Q 010353 375 IFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLME 418 (512)
Q Consensus 375 i~r~l~~~~~l~eek~i~~~ami~~k~~r~~Ly~L~~~g~v~~Q 418 (512)
|+.+...++.. ..++|++...++...+...+.+|.+.|||.-.
T Consensus 11 I~~l~~~~~~~-~~~~lA~~l~vs~~tvs~~l~~Le~~GlV~r~ 53 (214)
T 3hrs_A 11 LYELGTRHNKI-TNKEIAQLMQVSPPAVTEMMKKLLAEELLIKD 53 (214)
T ss_dssp HHHTTSSCSCC-CHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHhcCCCc-CHHHHHHHHCCChhHHHHHHHHHHHCCCEEEe
Confidence 44444445556 99999999999999999999999999999543
No 414
>2v7f_A RPS19, RPS19E SSU ribosomal protein S19E; diamond blackfan anemia small ribosomal subunit; 1.15A {Pyrococcus abyssi} SCOP: a.4.5.84
Probab=26.38 E-value=65 Score=27.70 Aligned_cols=47 Identities=19% Similarity=0.241 Sum_probs=38.5
Q ss_pred chhHHHHHHHHHhcCCCcHHHHHHhcC--------------CCHHHHHHHHHHHHhccccc
Q 010353 19 GDLVAKVCECLLRKGPLTRQNVKRYTE--------------LSDEQVKNALLVLIQQNCVQ 65 (512)
Q Consensus 19 G~~v~~V~~~Ll~~G~ltl~~I~~~t~--------------l~~~~Vr~aL~vLIQhn~V~ 65 (512)
-.-++.+...+..+|+....+|....+ .+...||.||-.|.+.|+|.
T Consensus 52 y~ria~~lr~~i~~g~~G~~~La~~~gg~k~~g~~p~~~~~vSr~tVR~AL~~Le~~GlV~ 112 (150)
T 2v7f_A 52 YYRVASILRRVYLDGPVGIERLRTYYGGRKNRGHAPERFYKAGGSIIRKALQQLEAAGFVE 112 (150)
T ss_dssp HHHHHHHHHHHHHHCSBCHHHHHHHHCC----CCCTTSCCCHHHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHCCCccCCcCCccccccchHHHHHHHHHHHHCCCEE
Confidence 344555666666677767789998888 99999999999999999997
No 415
>3tqn_A Transcriptional regulator, GNTR family; regulatory functions; 2.80A {Coxiella burnetii}
Probab=26.23 E-value=85 Score=25.14 Aligned_cols=31 Identities=19% Similarity=0.143 Sum_probs=29.1
Q ss_pred chhhhhhhcCCCcccHHHHHHHHhhcccceE
Q 010353 387 ETDKISDTTFVEKKDAPKILYKLWKDGYLLM 417 (512)
Q Consensus 387 eek~i~~~ami~~k~~r~~Ly~L~~~g~v~~ 417 (512)
.+.+|++.-.++...+|+.|..|..+|+|..
T Consensus 35 s~~~La~~~~vSr~tvr~al~~L~~~Gli~~ 65 (113)
T 3tqn_A 35 SIRKISTEYQINPLTVSKAYQSLLDDNVIEK 65 (113)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHHHCCCEEE
Confidence 7899999999999999999999999999843
No 416
>1j5y_A Transcriptional regulator, biotin repressor famil; structural genomics, TM1602, BIOT repressor family, JCSG, conserved hypothetical protein; 2.30A {Thermotoga maritima} SCOP: a.4.5.1 d.94.2.1
Probab=26.17 E-value=57 Score=28.82 Aligned_cols=44 Identities=18% Similarity=0.274 Sum_probs=37.9
Q ss_pred HHHHHHHHhcCCCcchhhhhhhcCCCcccHHHHHHHHhhccc-ce
Q 010353 373 YRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGY-LL 416 (512)
Q Consensus 373 ~Ri~r~l~~~~~l~eek~i~~~ami~~k~~r~~Ly~L~~~g~-v~ 416 (512)
.+|+++|.+.+..+.-++|++...++...++.-+..|-+.|+ |.
T Consensus 24 ~~Il~~L~~~~~~~s~~eLa~~l~vS~~Ti~rdi~~L~~~G~~I~ 68 (187)
T 1j5y_A 24 KSIVRILERSKEPVSGAQLAEELSVSRQVIVQDIAYLRSLGYNIV 68 (187)
T ss_dssp HHHHHHHHHCSSCBCHHHHHHHHTSCHHHHHHHHHHHHHHTCCCE
T ss_pred HHHHHHHHHcCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEE
Confidence 568888876555339999999999999999999999999999 64
No 417
>1i2t_A HYD protein; four alpha-helical domain, ligase; 1.04A {Homo sapiens} SCOP: a.144.1.1 PDB: 3ntw_A
Probab=25.70 E-value=37 Score=24.52 Aligned_cols=51 Identities=14% Similarity=0.143 Sum_probs=35.6
Q ss_pred HHHHhhhchhHHHHHHHHHhcCCCcHHHHHHhcCCCHHHHHHHHHHHHhcc
Q 010353 12 HVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQN 62 (512)
Q Consensus 12 ~iv~~~FG~~v~~V~~~Ll~~G~ltl~~I~~~t~l~~~~Vr~aL~vLIQhn 62 (512)
-+|...+-+.+++|...|+.-...-+-.+......=..+|..|+.+|-.|+
T Consensus 11 p~V~~~~p~~A~KITGMLLE~d~~ell~ll~~~e~L~~kv~EA~~vl~~~~ 61 (61)
T 1i2t_A 11 PRVQAMQPAFASKITGMLLELSPAQLLLLLASEDSLRARVDEAMELIIAHG 61 (61)
T ss_dssp HHHHHHCGGGHHHHHHHHTTSCHHHHHHHHHCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHhCcccccchhhhhccCCHHHHHHHHcCHHHHHHHHHHHHHHHHHcC
Confidence 356667889999999999985443333333333344578999999998875
No 418
>2wa0_A Melanoma-associated antigen 4; immune system, multiple anomalous dispersion, cancer/testis 1.4, melanoma antigen family A 4, CT1.4, MAGE-41; 2.30A {Homo sapiens}
Probab=25.65 E-value=32 Score=32.18 Aligned_cols=34 Identities=18% Similarity=0.321 Sum_probs=24.4
Q ss_pred ccHHHHH-HHHhhcccceEEEEecCCCCCceEEEEE
Q 010353 400 KDAPKIL-YKLWKDGYLLMEKLVVTGARQSQFLLWK 434 (512)
Q Consensus 400 k~~r~~L-y~L~~~g~v~~QEvpk~~~~~~t~~lw~ 434 (512)
-+.|++| ..|.++||++-+.||.++ |.+..|+|-
T Consensus 164 G~~rklit~~~Vkq~YLe~~qv~~sd-p~~~ef~WG 198 (240)
T 2wa0_A 164 GEPRKLLTQDWVQENYLEYRQVPGSN-PARYEFLWG 198 (240)
T ss_dssp BCHHHHHHTHHHHTTSEEEECC-------CCEEEEC
T ss_pred CCHHHHHHHHHHHcCCeEEEeecCCC-CCeEEEEEc
Confidence 3589999 789999999999888775 778889996
No 419
>2ek5_A Predicted transcriptional regulators; helix-turn-helix, interwined alpha helices; 2.20A {Corynebacterium glutamicum atcc 13032} PDB: 2du9_A
Probab=25.60 E-value=81 Score=26.09 Aligned_cols=31 Identities=19% Similarity=0.170 Sum_probs=29.2
Q ss_pred chhhhhhhcCCCcccHHHHHHHHhhcccceE
Q 010353 387 ETDKISDTTFVEKKDAPKILYKLWKDGYLLM 417 (512)
Q Consensus 387 eek~i~~~ami~~k~~r~~Ly~L~~~g~v~~ 417 (512)
.+.+|++.-.++...+|+.|..|..+|+|..
T Consensus 30 se~~La~~~gvSr~tVr~Al~~L~~~Gli~~ 60 (129)
T 2ek5_A 30 STNELAAFHRINPATARNGLTLLVEAGILYK 60 (129)
T ss_dssp CHHHHHHHTTCCHHHHHHHHHHHHTTTSEEE
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHHHCCcEEE
Confidence 7899999999999999999999999999944
No 420
>4fx0_A Probable transcriptional repressor protein; helix-turn-helix, DNA binding, transcription regulator; 2.70A {Mycobacterium tuberculosis} PDB: 4fx4_A*
Probab=25.45 E-value=88 Score=26.20 Aligned_cols=41 Identities=12% Similarity=0.084 Sum_probs=32.7
Q ss_pred HHHHHHhc-----CCCcHHHHHHhcCCCHHHHHHHHHHHHhccccc
Q 010353 25 VCECLLRK-----GPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQ 65 (512)
Q Consensus 25 V~~~Ll~~-----G~ltl~~I~~~t~l~~~~Vr~aL~vLIQhn~V~ 65 (512)
|-.+|..+ |++|..+|++.+++++..|-..+-.|.+.|+|.
T Consensus 38 vL~~l~~~~~~~~~~~t~~eLa~~l~~~~~tvsr~v~~Le~~glVr 83 (148)
T 4fx0_A 38 TLAVISLSEGSAGIDLTMSELAARIGVERTTLTRNLEVMRRDGLVR 83 (148)
T ss_dssp HHHHHHC---------CHHHHHHHHTCCHHHHHHHHHHHHHTTSBC
T ss_pred HHHHHHHhcCCCCCCcCHHHHHHHHCCChhhHHHHHHHHHHCCCEE
Confidence 44555544 458999999999999999999999999999995
No 421
>4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor}
Probab=25.23 E-value=84 Score=26.22 Aligned_cols=64 Identities=22% Similarity=0.247 Sum_probs=44.2
Q ss_pred HhCchH--HHHHHHHHh--cCCCcchhhhhhhcCCCcccHHHHHHHHhhcccceEEEEecCCCCCceEEEEE
Q 010353 367 RYGRDA--YRIFRLLSK--SGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTGARQSQFLLWK 434 (512)
Q Consensus 367 ~~G~~~--~Ri~r~l~~--~~~l~eek~i~~~ami~~k~~r~~Ly~L~~~g~v~~QEvpk~~~~~~t~~lw~ 434 (512)
.||-.. ++|+.+|.. .|.+ ...+|++...++...+-.++.+|.+.|||.-..-|. ..|..++.-
T Consensus 30 ~~gLt~~q~~vL~~L~~~~~~~~-t~~eLa~~l~~~~~tvs~~v~~Le~~Glv~r~~~~~---DrR~~~l~L 97 (147)
T 4b8x_A 30 PYGLTFARYEALVLLTFSKSGEL-PMSKIGERLMVHPTSVTNTVDRLVRSGLVAKRPNPN---DGRGTLATI 97 (147)
T ss_dssp GGTCCHHHHHHHHHHHTSGGGEE-EHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECC-------CEEEEE
T ss_pred HcCCCHHHHHHHHHHHHCCCCCc-CHHHHHHHHCCCHHHHHHHHHHHHhCCCEEEeecCC---cCceeEEEE
Confidence 456443 456776643 3456 999999999999999999999999999995543332 345554443
No 422
>2v9v_A Selenocysteine-specific elongation factor; transcription, protein conformational change, transcription elongation factor SELB; 1.10A {Moorella thermoacetica} SCOP: a.4.5.35 a.4.5.35
Probab=25.21 E-value=1.1e+02 Score=24.93 Aligned_cols=50 Identities=16% Similarity=0.157 Sum_probs=37.9
Q ss_pred chhHHHHHHHHHhcCC-CcHHHHHHhcCCCHHHHHHHHHHHHhccccceec
Q 010353 19 GDLVAKVCECLLRKGP-LTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFT 68 (512)
Q Consensus 19 G~~v~~V~~~Ll~~G~-ltl~~I~~~t~l~~~~Vr~aL~vLIQhn~V~~~~ 68 (512)
|+....|...|-..|. .+..+|.+.++++..++..+|-.|+..+=|..+.
T Consensus 1 ~~~~~~l~~~L~~~~~~~~~~~l~~~~~l~~~~l~~~l~~l~~~~~~~~~~ 51 (135)
T 2v9v_A 1 GSPEKILAQIIQEHREGLDWQEAATRASLSLEETRKLLQSMAAAGQVTLLR 51 (135)
T ss_dssp CCHHHHHHHHHHHCSSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTCEEEEE
T ss_pred CCHHHHHHHHHHHcCcCCCHHHHHHHhCCCHHHHHHHHHHHHhCCcEEEEe
Confidence 4455556666666654 3349999999999999999999999988665454
No 423
>3f8m_A GNTR-family protein transcriptional regulator; PHNF, HUTC, winged helix-TUR UTRA, DNA-binding, transcription regulation; 1.80A {Mycobacterium smegmatis}
Probab=24.96 E-value=70 Score=29.70 Aligned_cols=33 Identities=24% Similarity=0.408 Sum_probs=30.8
Q ss_pred CCC-cHHHHHHhcCCCHHHHHHHHHHHHhccccc
Q 010353 33 GPL-TRQNVKRYTELSDEQVKNALLVLIQQNCVQ 65 (512)
Q Consensus 33 G~l-tl~~I~~~t~l~~~~Vr~aL~vLIQhn~V~ 65 (512)
.++ |-.+|+...+++...||+||-.|.+.|+|.
T Consensus 34 ~~lPse~~La~~~~vSr~tvr~Al~~L~~~G~i~ 67 (248)
T 3f8m_A 34 DPFPAEREIAEQFEVARETVRQALRELLIDGRVE 67 (248)
T ss_dssp CBCCCHHHHHHHTTCCHHHHHHHHHHHHHTTSEE
T ss_pred CcCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEE
Confidence 366 789999999999999999999999999997
No 424
>1z3e_B DNA-directed RNA polymerase alpha chain; bacterial transcription regulation, disulfide stress; 1.50A {Bacillus subtilis} SCOP: a.60.3.1 PDB: 3ihq_B
Probab=24.62 E-value=96 Score=23.12 Aligned_cols=45 Identities=24% Similarity=0.277 Sum_probs=37.8
Q ss_pred hhHHHHHHHHHhcCCCcHHHHHHhc--------CCCHHHHHHHHHHHHhcccc
Q 010353 20 DLVAKVCECLLRKGPLTRQNVKRYT--------ELSDEQVKNALLVLIQQNCV 64 (512)
Q Consensus 20 ~~v~~V~~~Ll~~G~ltl~~I~~~t--------~l~~~~Vr~aL~vLIQhn~V 64 (512)
++..+...||-+.|=-|+.+|++.+ ++.++.+....-.|-++|+-
T Consensus 15 ~LS~Ra~NcLkragI~Tv~dL~~~s~~dLlki~n~G~kSl~EI~~~L~~~gl~ 67 (73)
T 1z3e_B 15 DLSVRSYNCLKRAGINTVQELANKTEEDMMKVRNLGRKSLEEVKAKLEELGLG 67 (73)
T ss_dssp CCBHHHHHHHHHTTCCBHHHHHTSCHHHHHTSTTCCHHHHHHHHHHHHHTTCC
T ss_pred CCCHHHHHHHHHcCCCcHHHHHcCCHHHHHHcCCCCHHHHHHHHHHHHHhCCC
Confidence 5778999999999999999998775 57888888888888888764
No 425
>3elk_A Putative transcriptional regulator TA0346; structural genomics, PSI-2, prote structure initiative; 1.70A {Thermoplasma acidophilum}
Probab=24.58 E-value=1.1e+02 Score=24.68 Aligned_cols=38 Identities=13% Similarity=0.218 Sum_probs=28.9
Q ss_pred CCcccHHHHHHHHhhcccceEEEEecCCCCCceEEEEEEe
Q 010353 397 VEKKDAPKILYKLWKDGYLLMEKLVVTGARQSQFLLWKVN 436 (512)
Q Consensus 397 i~~k~~r~~Ly~L~~~g~v~~QEvpk~~~~~~t~~lw~v~ 436 (512)
++...+-..|.+|.++|+|.....+....|.+.+| .+.
T Consensus 45 i~~gtly~~L~~Le~~GlI~~~~~~~~~~~~rk~Y--~lT 82 (117)
T 3elk_A 45 LPQGSIYILLKTMKERGFVISESSVNEKGQQLTVY--HIT 82 (117)
T ss_dssp CCTTHHHHHHHHHHHHTSEEEEEEEC-CCCEEEEE--EEC
T ss_pred CCcchHHHHHHHHHHCCCEEEEeeecCCCCCceEE--EEC
Confidence 67789999999999999999887764335666655 444
No 426
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2
Probab=24.05 E-value=94 Score=27.81 Aligned_cols=50 Identities=14% Similarity=0.185 Sum_probs=44.2
Q ss_pred hhhchhHHHHHHHHHhc----C-----CCcHHHHHHhcCCCHHHHHHHHHHHHhccccc
Q 010353 16 NHFGDLVAKVCECLLRK----G-----PLTRQNVKRYTELSDEQVKNALLVLIQQNCVQ 65 (512)
Q Consensus 16 ~~FG~~v~~V~~~Ll~~----G-----~ltl~~I~~~t~l~~~~Vr~aL~vLIQhn~V~ 65 (512)
-.+.+..++++.+|+.. | ++|..+|+...|+++..|-..|-.|.+.|++.
T Consensus 159 l~~~~~~~Rl~~~L~~l~~~~~~~~~~~~t~~~lA~~lG~sr~tvsR~l~~l~~~glI~ 217 (232)
T 1zyb_A 159 EPTLDLKSKIIRFFLSHCEKPQGEKTFKVKMDDLARCLDDTRLNISKTLNELQDNGLIE 217 (232)
T ss_dssp CCCCSHHHHHHHHHHTTCSSSSSCEEEECCHHHHHHHHTSCHHHHHHHHHHHHHTTSCE
T ss_pred HhhcCHHHHHHHHHHHHHhhcCCeEEecCCHHHHHHHhCCChhHHHHHHHHHHHCCCEE
Confidence 34678899999999873 2 46899999999999999999999999999997
No 427
>3by6_A Predicted transcriptional regulator; structural genomics, PSI-2, MCSG, structure initiative, midwest center for structural genomic binding; 2.20A {Oenococcus oeni}
Probab=24.00 E-value=2.4e+02 Score=22.89 Aligned_cols=31 Identities=6% Similarity=-0.016 Sum_probs=29.3
Q ss_pred chhhhhhhcCCCcccHHHHHHHHhhcccceE
Q 010353 387 ETDKISDTTFVEKKDAPKILYKLWKDGYLLM 417 (512)
Q Consensus 387 eek~i~~~ami~~k~~r~~Ly~L~~~g~v~~ 417 (512)
.+.+|++.-.++...+|+.|..|..+|+|..
T Consensus 37 se~~La~~~~vSr~tvr~Al~~L~~~Gli~~ 67 (126)
T 3by6_A 37 SVRETALQEKINPNTVAKAYKELEAQKVIRT 67 (126)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHHHCCCEEE
Confidence 8999999999999999999999999999943
No 428
>4g6q_A Putative uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 2.08A {Kribbella flavida}
Probab=23.94 E-value=64 Score=28.45 Aligned_cols=66 Identities=12% Similarity=0.183 Sum_probs=47.0
Q ss_pred hhHHHHHHHHHhcCCCcHHHHHHhcC-CCHHHHHHHHHHHHhccccceecccCCCCCCCCCCCccEEEechhh
Q 010353 20 DLVAKVCECLLRKGPLTRQNVKRYTE-LSDEQVKNALLVLIQQNCVQAFTTEQPDGFADGPKANTQYVVLFDN 91 (512)
Q Consensus 20 ~~v~~V~~~Ll~~G~ltl~~I~~~t~-l~~~~Vr~aL~vLIQhn~V~~~~~~~~~~~~~~~~~~~~Y~~~~~~ 91 (512)
|+=-+|...| ..|++|..+|+...+ ++.+.|-+=|-+|-+.|+|..-.....+| ...-+|.+....
T Consensus 23 P~Rl~il~~L-~~~~~~~~~l~~~l~~~~~~~~s~Hl~~L~~aglv~~~~e~~~~g-----~~er~y~~~~~~ 89 (182)
T 4g6q_A 23 PLRWRITQLL-IGRSLTTRELAELLPDVATTTLYRQVGILVKAGVLMVTAEHQVRG-----AVERTYTLNTQA 89 (182)
T ss_dssp HHHHHHHHHT-TTSCEEHHHHHHHCTTBCHHHHHHHHHHHHHHTSEEEEEEEEETT-----EEEEEEEECTTT
T ss_pred HHHHHHHHHH-HhCCCCHHHHHHHhcCCCHHHHHHHHHHHHHCCCeEEEEeecccC-----cceeEEEecccc
Confidence 5555677655 579999999999875 99999999999999999998333221111 112467776554
No 429
>3sxy_A Transcriptional regulator, GNTR family; transcription factor, metal-binding, structur genomics, PSI-2, protein structure initiative; 1.65A {Thermotoga maritima} PDB: 3dbw_A 3fms_A*
Probab=23.93 E-value=43 Score=30.26 Aligned_cols=32 Identities=25% Similarity=0.298 Sum_probs=30.4
Q ss_pred CCcHHHHHHhcCCCHHHHHHHHHHHHhccccc
Q 010353 34 PLTRQNVKRYTELSDEQVKNALLVLIQQNCVQ 65 (512)
Q Consensus 34 ~ltl~~I~~~t~l~~~~Vr~aL~vLIQhn~V~ 65 (512)
+++-.+|+...+++...||.||..|.+.|+|.
T Consensus 35 ~L~e~~La~~lgVSRtpVREAL~~L~~eGlv~ 66 (218)
T 3sxy_A 35 KLNVRELSEKLGISFTPVRDALLQLATEGLVK 66 (218)
T ss_dssp EECHHHHHHHHTCCHHHHHHHHHHHHHHTSEE
T ss_pred EeCHHHHHHHHCCCHHHHHHHHHHHHHCCCEE
Confidence 67789999999999999999999999999997
No 430
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1
Probab=23.85 E-value=2e+02 Score=25.19 Aligned_cols=31 Identities=19% Similarity=0.344 Sum_probs=29.4
Q ss_pred chhhhhhhcCCCcccHHHHHHHHhhcccceE
Q 010353 387 ETDKISDTTFVEKKDAPKILYKLWKDGYLLM 417 (512)
Q Consensus 387 eek~i~~~ami~~k~~r~~Ly~L~~~g~v~~ 417 (512)
.+++||+...++...+-.+|.+|.++|+|..
T Consensus 165 t~~~lA~~lG~sr~tvsR~l~~L~~~g~I~~ 195 (222)
T 1ft9_A 165 TVEEIANLIGSSRQTTSTALNSLIKEGYISR 195 (222)
T ss_dssp CHHHHHHHHCSCHHHHHHHHHHHHHTTSSEE
T ss_pred CHHHHHHHhCCcHHHHHHHHHHHHHCCcEEE
Confidence 8999999999999999999999999999954
No 431
>2p8t_A Hypothetical protein PH0730; pyrococcus horikoshii OT3, STR genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.72 d.74.4.2
Probab=23.64 E-value=90 Score=28.23 Aligned_cols=35 Identities=26% Similarity=0.425 Sum_probs=33.0
Q ss_pred cCCCcHHHHHHhcCCCHHHHHHHHHHHHhccccce
Q 010353 32 KGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQA 66 (512)
Q Consensus 32 ~G~ltl~~I~~~t~l~~~~Vr~aL~vLIQhn~V~~ 66 (512)
.++.+-.+|++..+++++.|+.++-.|-..|+|.|
T Consensus 28 ~~~V~~~~LA~~LgvS~~SV~~~lkkL~e~GLV~~ 62 (200)
T 2p8t_A 28 KEPLGRKQISERLELGEGSVRTLLRKLSHLDIIRS 62 (200)
T ss_dssp TSCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred cCCccHHHHHHHhCCCHHHHHHHHHHHHHCCCEEE
Confidence 57889999999999999999999999999999984
No 432
>2b0l_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, winged HTH motif.; 2.90A {Bacillus subtilis} SCOP: a.4.5.66
Probab=23.37 E-value=1.1e+02 Score=24.11 Aligned_cols=33 Identities=27% Similarity=0.245 Sum_probs=30.2
Q ss_pred CcchhhhhhhcCCCcccHHHHHHHHhhcccceE
Q 010353 385 LLETDKISDTTFVEKKDAPKILYKLWKDGYLLM 417 (512)
Q Consensus 385 l~eek~i~~~ami~~k~~r~~Ly~L~~~g~v~~ 417 (512)
+..+.+|++.-.++...+|+.|..|..+|+|..
T Consensus 43 lps~~eLa~~lgVSr~tVr~al~~L~~~GlI~~ 75 (102)
T 2b0l_A 43 LLVASKIADRVGITRSVIVNALRKLESAGVIES 75 (102)
T ss_dssp EECHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEE
Confidence 448999999999999999999999999999844
No 433
>2hs5_A Putative transcriptional regulator GNTR; APC6050, rhodococcus SP. RH structural genomics, PSI-2, protein structure initiative; 2.20A {Rhodococcus SP} SCOP: a.4.5.6 a.78.1.1
Probab=23.22 E-value=1.5e+02 Score=26.97 Aligned_cols=34 Identities=21% Similarity=0.218 Sum_probs=31.4
Q ss_pred CCcchhhhhhhcCCCcccHHHHHHHHhhcccceEE
Q 010353 384 RLLETDKISDTTFVEKKDAPKILYKLWKDGYLLME 418 (512)
Q Consensus 384 ~l~eek~i~~~ami~~k~~r~~Ly~L~~~g~v~~Q 418 (512)
+| .|.+|++.-.++..-+|+.|..|..+|+|...
T Consensus 51 ~L-~e~~La~~lgVSRtpVREAL~~L~~eGlv~~~ 84 (239)
T 2hs5_A 51 RL-SEPDICAALDVSRNTVREAFQILIEDRLVAHE 84 (239)
T ss_dssp EE-CHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred Ee-CHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEe
Confidence 45 99999999999999999999999999999654
No 434
>4esb_A Transcriptional regulator, PADR family; DNA binding protein, HTH fold; 2.50A {Bacillus cereus}
Probab=23.21 E-value=1.4e+02 Score=23.94 Aligned_cols=38 Identities=8% Similarity=0.127 Sum_probs=28.7
Q ss_pred CCcccHHHHHHHHhhcccceEEEEecCCCCCceEEEEEEe
Q 010353 397 VEKKDAPKILYKLWKDGYLLMEKLVVTGARQSQFLLWKVN 436 (512)
Q Consensus 397 i~~k~~r~~Ly~L~~~g~v~~QEvpk~~~~~~t~~lw~v~ 436 (512)
++...+-..|.+|.++|+|.-...+....|.+.+| ++.
T Consensus 40 is~gtlY~~L~rLe~~GlI~~~~~~~~~g~~rk~Y--~LT 77 (115)
T 4esb_A 40 VSEGSIYPLLLRMQKEKLIEGTLKASSLGPKRKYY--HIT 77 (115)
T ss_dssp CCHHHHHHHHHHHHHTTSEEEEEEECTTSCEEEEE--EEC
T ss_pred CCcChHHHHHHHHHHCCCeEEEeeecCCCCCcEEE--EEC
Confidence 67788899999999999998877665434666654 444
No 435
>1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG, PSI, protein structure initiative, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2
Probab=22.89 E-value=31 Score=30.70 Aligned_cols=56 Identities=14% Similarity=0.193 Sum_probs=5.4
Q ss_pred HHHHHHhhhchhHHHHHHHHHhcC--------CCcHHHHHHhcCCCHHHHHHHHHHHHhccccc
Q 010353 10 AVHVITNHFGDLVAKVCECLLRKG--------PLTRQNVKRYTELSDEQVKNALLVLIQQNCVQ 65 (512)
Q Consensus 10 c~~iv~~~FG~~v~~V~~~Ll~~G--------~ltl~~I~~~t~l~~~~Vr~aL~vLIQhn~V~ 65 (512)
...+..-.+.+...+++.+|+... ++|..+|+..+|+++..|-..|--|.+.|++.
T Consensus 132 ~~~~~~l~~~~~~~Rl~~~L~~~~~~~g~~~~~~t~~~lA~~lg~sr~tvsR~l~~L~~~G~I~ 195 (213)
T 1o5l_A 132 SEKLFFLTTKTLREKLMNFLVRHMNEKRELTLPVTLEELSRLFGCARPALSRVFQELEREGYIE 195 (213)
T ss_dssp HHHHHHHHCC------------------------------------------------------
T ss_pred HHHHHHHhhCCHHHHHHHHHHHHhccCCcccCCCCHHHHHHHhCCCHHHHHHHHHHHHHCCeEE
Confidence 334445567888899999998764 67888999999999999999999999999997
No 436
>2w48_A Sorbitol operon regulator; SORC, activator, repressor, DNA-binding, transcription, transcription regulator, transcription regulation; 3.20A {Klebsiella pneumoniae}
Probab=22.83 E-value=95 Score=29.84 Aligned_cols=40 Identities=15% Similarity=0.095 Sum_probs=36.6
Q ss_pred HHHHHhcCCCcHHHHHHhcCCCHHHHHHHHHHHHhccccc
Q 010353 26 CECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQ 65 (512)
Q Consensus 26 ~~~Ll~~G~ltl~~I~~~t~l~~~~Vr~aL~vLIQhn~V~ 65 (512)
...|...|.+|..+|++..++|...||.=|-.|-+.|+|.
T Consensus 13 ia~l~~~~~~~~~ela~~l~vS~~tIrRdL~~l~~~G~v~ 52 (315)
T 2w48_A 13 IAQLYYEQDMTQAQIARELGIYRTTISRLLKRGREQGIVT 52 (315)
T ss_dssp HHHHHHTSCCCHHHHHHHTTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCcEE
Confidence 4455778889999999999999999999999999999996
No 437
>3l7w_A Putative uncharacterized protein SMU.1704; PADR, transcriptional factor, transcription; HET: MSE; 2.20A {Streptococcus mutans} SCOP: a.4.5.0
Probab=22.81 E-value=1.2e+02 Score=23.87 Aligned_cols=48 Identities=17% Similarity=0.132 Sum_probs=35.4
Q ss_pred HHHHHHHcccCCHHHHHHHHhhcccCCCccCHHHHHHHHHHHHhcccccccC
Q 010353 116 LVQGLLEHGRLTLKQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCP 167 (512)
Q Consensus 116 Iv~~lL~~G~l~~~~li~~~~~~~~~~~~~~~~~l~~~f~~Lv~~~fi~rv~ 167 (512)
.|-.+|..|-.+..++.+.+.... ..+...+..++.+|.++|||.+..
T Consensus 13 ~IL~~L~~~~~~gyel~~~l~~~~----~i~~~tly~~L~~Le~~GlI~~~~ 60 (108)
T 3l7w_A 13 LILAIVSKHDSYGYDISQTIKLIA----SIKESTLYPILKKLEKAGYLSTYT 60 (108)
T ss_dssp HHHHHHHHSCEEHHHHHHHHTTTC----CCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHcCCCcHHHHHHHHHHHh----CCCcChHHHHHHHHHHCCCeEEEe
Confidence 344455567788888887765422 136788999999999999998874
No 438
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=22.78 E-value=1.5e+02 Score=18.61 Aligned_cols=26 Identities=12% Similarity=0.092 Sum_probs=21.4
Q ss_pred HHhcCCCcHHHHHHhcCCCHHHHHHHH
Q 010353 29 LLRKGPLTRQNVKRYTELSDEQVKNAL 55 (512)
Q Consensus 29 Ll~~G~ltl~~I~~~t~l~~~~Vr~aL 55 (512)
+...| .|..+|++.++++...|+.-+
T Consensus 17 ~~~~g-~s~~~IA~~lgis~~Tv~~~~ 42 (51)
T 1tc3_C 17 MKLLN-VSLHEMSRKISRSRHCIRVYL 42 (51)
T ss_dssp HHHTT-CCHHHHHHHHTCCHHHHHHHH
T ss_pred HHHcC-CCHHHHHHHHCcCHHHHHHHH
Confidence 34455 699999999999999998765
No 439
>2v7f_A RPS19, RPS19E SSU ribosomal protein S19E; diamond blackfan anemia small ribosomal subunit; 1.15A {Pyrococcus abyssi} SCOP: a.4.5.84
Probab=22.76 E-value=1.3e+02 Score=25.70 Aligned_cols=57 Identities=16% Similarity=0.297 Sum_probs=38.4
Q ss_pred hhHHHHHHHHHHcccCCHHHHHHHHhhcccCC------CccCHHHHHHHHHHHHhcccccccC
Q 010353 111 QQCVELVQGLLEHGRLTLKQMFDRAKSSEKEG------NLVDLDSLRETLVKLVTAHYVERCP 167 (512)
Q Consensus 111 ~~a~~Iv~~lL~~G~l~~~~li~~~~~~~~~~------~~~~~~~l~~~f~~Lv~~~fi~rv~ 167 (512)
..++.++..++.+|..-..++-+.+..+...| ...|..-+++++.+|...|+|...|
T Consensus 53 ~ria~~lr~~i~~g~~G~~~La~~~gg~k~~g~~p~~~~~vSr~tVR~AL~~Le~~GlV~~~~ 115 (150)
T 2v7f_A 53 YRVASILRRVYLDGPVGIERLRTYYGGRKNRGHAPERFYKAGGSIIRKALQQLEAAGFVEKVP 115 (150)
T ss_dssp HHHHHHHHHHHHHCSBCHHHHHHHHCC----CCCTTSCCCHHHHHHHHHHHHHHHTTSEEEET
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHCCCccCCcCCccccccchHHHHHHHHHHHHCCCEEEeC
Confidence 45677777778888555566655554221111 1247788999999999999998875
No 440
>2e1n_A PEX, period extender; circadian clock, DNA binding protein, circadian clock protei; 1.80A {Synechococcus elongatus pcc 7942}
Probab=22.71 E-value=2.2e+02 Score=23.79 Aligned_cols=59 Identities=17% Similarity=0.189 Sum_probs=41.3
Q ss_pred HHhcCCCcHHHHHHhc-------CCCHHHHHHHHHHHHhccccceecccCCCCCCCCCCCccEEEechhh
Q 010353 29 LLRKGPLTRQNVKRYT-------ELSDEQVKNALLVLIQQNCVQAFTTEQPDGFADGPKANTQYVVLFDN 91 (512)
Q Consensus 29 Ll~~G~ltl~~I~~~t-------~l~~~~Vr~aL~vLIQhn~V~~~~~~~~~~~~~~~~~~~~Y~~~~~~ 91 (512)
++..|+..-.+|.+.. +++...|...|-.|.+.|+|.......+++ ++...+|++-..+
T Consensus 42 lL~~~~~~Gyei~k~l~~~~~~~~is~gtLYp~L~rLe~~GlI~~~~~~~~~~----g~~rk~Y~LT~~G 107 (138)
T 2e1n_A 42 VLRHEDSYGTELIQHLETHWPNYRLSDTVLYTALKFLEDEQIISGYWKKVEGR----GRPRRMYQLAQAN 107 (138)
T ss_dssp HHTTSCEEHHHHHHHHHHHSTTEECCHHHHHHHHHHHHHTTSEEEEEECCTTC----SSCEEEEEESCSC
T ss_pred HHHhCCCcHHHHHHHHHHHcCCCCCCccHHHHHHHHHHHCCCEEEEeecccCC----CCCcEEEEECHHH
Confidence 4456888777776553 589999999999999999998443321111 1335789988665
No 441
>2esh_A Conserved hypothetical protein TM0937; APC5794, structural genomics, PSI, protein structure initiative; 2.30A {Thermotoga maritima} SCOP: a.4.5.61
Probab=22.41 E-value=3e+02 Score=21.91 Aligned_cols=38 Identities=13% Similarity=0.205 Sum_probs=29.2
Q ss_pred CCc-ccHHHHHHHHhhcccceEEEEecCCCCCceEEEEEEeh
Q 010353 397 VEK-KDAPKILYKLWKDGYLLMEKLVVTGARQSQFLLWKVNR 437 (512)
Q Consensus 397 i~~-k~~r~~Ly~L~~~g~v~~QEvpk~~~~~~t~~lw~v~~ 437 (512)
++. ..+-..|.+|.++|+|.....+. ..|.+.+| ++..
T Consensus 46 is~~~tly~~L~~Le~~GlI~~~~~~~-~~~~r~~Y--~LT~ 84 (118)
T 2esh_A 46 IGHMGNIYRVLADLEESGFLSTEWDTT-VSPPRKIY--RITP 84 (118)
T ss_dssp CCCCCCHHHHHHHHHHTTSEEEEEECS-SSSCEEEE--EECH
T ss_pred CCCcchHHHHHHHHHHCCCeEEEeecC-CCCCceEE--EECh
Confidence 778 89999999999999998887665 33556554 5553
No 442
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=22.36 E-value=1.9e+02 Score=23.69 Aligned_cols=51 Identities=8% Similarity=0.074 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHhCchHHHHHHHHHhcCCCcchhhhhhhcCCCcccHHHHHHHHh
Q 010353 357 NEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLW 410 (512)
Q Consensus 357 ~~~le~~v~~~~G~~~~Ri~r~l~~~~~l~eek~i~~~ami~~k~~r~~Ly~L~ 410 (512)
...+...+.+.+.+.-..||. +.- ..+ +.++||+...+|.+.++..+++-.
T Consensus 99 ~~~l~~~l~~~L~~~~r~v~~-~~~-~g~-s~~EIA~~lgis~~tV~~~~~ra~ 149 (164)
T 3mzy_A 99 IEEFKKFSENNFSKFEKEVLT-YLI-RGY-SYREIATILSKNLKSIDNTIQRIR 149 (164)
T ss_dssp HHHHHHHHHHHSCHHHHHHHH-HHT-TTC-CHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhCCHHHHHHHH-HHH-cCC-CHHHHHHHHCCCHHHHHHHHHHHH
Confidence 344556666788888899998 544 477 999999999999999998888754
No 443
>1hw1_A FADR, fatty acid metabolism regulator protein; helix-turn-helix, helix bundle, transcription; 1.50A {Escherichia coli} SCOP: a.4.5.6 a.78.1.1 PDB: 1hw2_A 1e2x_A 1h9g_A* 1h9t_A
Probab=21.95 E-value=67 Score=29.25 Aligned_cols=32 Identities=9% Similarity=0.224 Sum_probs=29.9
Q ss_pred CC-cHHHHHHhcCCCHHHHHHHHHHHHhccccc
Q 010353 34 PL-TRQNVKRYTELSDEQVKNALLVLIQQNCVQ 65 (512)
Q Consensus 34 ~l-tl~~I~~~t~l~~~~Vr~aL~vLIQhn~V~ 65 (512)
++ |-.+|+...+++...||.||-.|.+.|+|.
T Consensus 30 ~LPsE~eLa~~~gVSR~tVReAL~~L~~eGlv~ 62 (239)
T 1hw1_A 30 ILPAERELSELIGVTRTTLREVLQRLARDGWLT 62 (239)
T ss_dssp BCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCcEE
Confidence 56 588999999999999999999999999997
No 444
>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A*
Probab=21.84 E-value=1.7e+02 Score=25.97 Aligned_cols=55 Identities=15% Similarity=0.103 Sum_probs=45.3
Q ss_pred HHHHHHHhhhchhHHHHHHHHHhcC-----------CCcHHHHHHhcCCCHHHHHHHHHHHHhccc
Q 010353 9 HAVHVITNHFGDLVAKVCECLLRKG-----------PLTRQNVKRYTELSDEQVKNALLVLIQQNC 63 (512)
Q Consensus 9 Lc~~iv~~~FG~~v~~V~~~Ll~~G-----------~ltl~~I~~~t~l~~~~Vr~aL~vLIQhn~ 63 (512)
+...+..-.+.+...+++..|+... ++|-.+|+..+|+++..|-..|--|.+.|+
T Consensus 142 ~~~~~~~l~~~~~~~Rl~~~L~~~~~~~~~~~~~~l~~t~~~iA~~lg~sr~tvsR~l~~L~~~gi 207 (237)
T 3fx3_A 142 LVAQLEQLKAQTGAQRVAEFLLELCDCDTGACEVTLPYDKMLIAGRLGMKPESLSRAFSRLKAAGV 207 (237)
T ss_dssp HHHHHHHCCCCCHHHHHHHHHHHHCCC-----EEECCSCTHHHHHHTTCCHHHHHHHHHHHGGGTE
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhhcCCCeEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHCCe
Confidence 3344555577889999999999742 345789999999999999999999999995
No 445
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=21.80 E-value=2.5e+02 Score=26.35 Aligned_cols=46 Identities=11% Similarity=0.139 Sum_probs=39.2
Q ss_pred chhHHHHHHHHHhcCCCcHHHHHHhc-----CCCHHHHHHHHHHHHhccccc
Q 010353 19 GDLVAKVCECLLRKGPLTRQNVKRYT-----ELSDEQVKNALLVLIQQNCVQ 65 (512)
Q Consensus 19 G~~v~~V~~~Ll~~G~ltl~~I~~~t-----~l~~~~Vr~aL~vLIQhn~V~ 65 (512)
.+....|...+.. |+.++.+|...+ +++...+..+|-.|++.++|.
T Consensus 281 ~~~~~~~l~~la~-g~~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~~gli~ 331 (350)
T 2qen_A 281 SPRYVDILRAIAL-GYNRWSLIRDYLAVKGTKIPEPRLYALLENLKKMNWIV 331 (350)
T ss_dssp CHHHHHHHHHHHT-TCCSHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSEE
T ss_pred ChhHHHHHHHHHh-CCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCEE
Confidence 4556778887776 888999998776 899999999999999999996
No 446
>3eqx_A FIC domain containing transcriptional regulator; FIC family protein, structural genomics, joint center for ST genomics, JCSG; HET: MSE PGE; 1.60A {Shewanella oneidensis}
Probab=21.79 E-value=1.4e+02 Score=29.65 Aligned_cols=44 Identities=9% Similarity=0.035 Sum_probs=41.0
Q ss_pred HHHHHHHHHhcCCCcHHHHHHhcCCCHHHHHHHHHHHHhccccc
Q 010353 22 VAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQ 65 (512)
Q Consensus 22 v~~V~~~Ll~~G~ltl~~I~~~t~l~~~~Vr~aL~vLIQhn~V~ 65 (512)
...+...|..++..|..++.+.++.+...++..|-.|+..|++.
T Consensus 299 ~~~ll~~l~~~p~~t~~~~~~~~~~S~~TA~r~L~~L~e~GiL~ 342 (373)
T 3eqx_A 299 SHELVQVIFEQPYCRIQNLVESGLAKRQTASVYLKQLCDIGVLE 342 (373)
T ss_dssp CHHHHHHHHHCSEEEHHHHHHTSSSCHHHHHHHHHHHHHTTSCE
T ss_pred HHHHHHHHHHCCCccHHHHHHHhCcCHHHHHHHHHHHHHCCcEE
Confidence 45788899999999999999999999999999999999999997
No 447
>3gfk_B DNA-directed RNA polymerase subunit alpha; protein-protein complex, cytoplasm, redox-active center, stress response, transcription; 2.30A {Bacillus subtilis} SCOP: a.60.3.1
Probab=21.72 E-value=70 Score=24.36 Aligned_cols=45 Identities=24% Similarity=0.277 Sum_probs=37.9
Q ss_pred hhHHHHHHHHHhcCCCcHHHHHHhc--------CCCHHHHHHHHHHHHhcccc
Q 010353 20 DLVAKVCECLLRKGPLTRQNVKRYT--------ELSDEQVKNALLVLIQQNCV 64 (512)
Q Consensus 20 ~~v~~V~~~Ll~~G~ltl~~I~~~t--------~l~~~~Vr~aL~vLIQhn~V 64 (512)
++..+...||-+.|=-|+.+|++.+ ++.++.+....-.|-++|+-
T Consensus 22 ~LS~Ra~NcLk~agI~Tv~dL~~~se~dLlki~n~G~kSl~EI~~~L~e~Gl~ 74 (79)
T 3gfk_B 22 DLSVRSYNCLKRAGINTVQELANKTEEDMMKVRNLGRKSLEEVKAKLEELGLG 74 (79)
T ss_dssp CCBHHHHHHHHHTTCCBHHHHTTCCHHHHTTSTTCHHHHHHHHHHHHHHTTCC
T ss_pred CCCHHHHHHHHHhCCCCHHHHHhCCHHHHHHcCCCCHhHHHHHHHHHHHcCCC
Confidence 5678999999999999999998775 57778888888888888875
No 448
>2dql_A PEX protein; circadian clock associated protein, circadian clock protein; 1.70A {Anabaena SP}
Probab=21.63 E-value=1.8e+02 Score=23.37 Aligned_cols=54 Identities=7% Similarity=0.027 Sum_probs=38.7
Q ss_pred hHHHHHHHHHHcccCCHHHHHHHHhhcccCCCccCHHHHHHHHHHHHhccccccc
Q 010353 112 QCVELVQGLLEHGRLTLKQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERC 166 (512)
Q Consensus 112 ~a~~Iv~~lL~~G~l~~~~li~~~~~~~~~~~~~~~~~l~~~f~~Lv~~~fi~rv 166 (512)
....+|-.+|..|-..--++.+.+....+ .-..+...+..++.+|.++|||.+.
T Consensus 22 l~~~~IL~lL~~~~~~Gyei~~~l~~~~~-~~~is~gtLY~~L~rLe~~GlI~~~ 75 (115)
T 2dql_A 22 VAICYILYVLLQGESYGTELIQQLETEHP-TYRLSDTVLYSAIKFLEDNRAITGY 75 (115)
T ss_dssp HHHHHHHHHHTTSCBCHHHHHHHHHHHCT-TEECCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHcC-CCCCCcchHHHHHHHHHHCCCEEEE
Confidence 34454666777788888888777654321 0124788999999999999999875
No 449
>2o0m_A Transcriptional regulator, SORC family; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Enterococcus faecalis} SCOP: c.124.1.8
Probab=21.09 E-value=20 Score=35.30 Aligned_cols=44 Identities=11% Similarity=0.032 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCCCcchhhhhhhcCCCcccHHHHHHHHhhcccceE
Q 010353 373 YRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLM 417 (512)
Q Consensus 373 ~Ri~r~l~~~~~l~eek~i~~~ami~~k~~r~~Ly~L~~~g~v~~ 417 (512)
.+|+..|..++.+ .+++|++...++...+|..|.+|.+.|+|+.
T Consensus 23 ~~iL~~l~~~~~~-t~~eLa~~l~vs~~Tv~r~l~~Le~~Glv~~ 66 (345)
T 2o0m_A 23 FQILRNIYWMQPI-GRRSLSETMGITERVLRTETDVLKQLNLIEP 66 (345)
T ss_dssp ---------------------------------------------
T ss_pred HHHHHHHHHcCCC-CHHHHHHHHCcCHHHHHHHHHHHHHCCCEEE
Confidence 4577788777777 9999999999999999999999999999953
No 450
>3l9f_A Putative uncharacterized protein SMU.1604C; PADR, transcription regulator; 1.80A {Streptococcus mutans}
Probab=21.09 E-value=73 Score=28.82 Aligned_cols=58 Identities=10% Similarity=0.043 Sum_probs=43.2
Q ss_pred HHhcCCCcHHHHHHhc--------CCCHHHHHHHHHHHHhccccceecccCCCCCCCCCCCccEEEechhh
Q 010353 29 LLRKGPLTRQNVKRYT--------ELSDEQVKNALLVLIQQNCVQAFTTEQPDGFADGPKANTQYVVLFDN 91 (512)
Q Consensus 29 Ll~~G~ltl~~I~~~t--------~l~~~~Vr~aL~vLIQhn~V~~~~~~~~~~~~~~~~~~~~Y~~~~~~ 91 (512)
|+..|+.+-.+|.+.. ++++.+|..+|-.|.+.|+|.......++ .+...+|++-..+
T Consensus 44 lL~~~p~~GYeL~~~l~~~~~~~~~~s~g~lY~~L~rLe~~GlI~~~~~~~~~-----~p~rk~Y~iT~~G 109 (204)
T 3l9f_A 44 ILSKKERSGYEINDILQNQLSYFYDGTYGMIYPTLRKLEKDGKITKEVVIQDG-----RPNKNIYAITESG 109 (204)
T ss_dssp HTSSCCEEHHHHHHHHHHTSTTTEECCTTCHHHHHHHHHHTTSEEEEEECCTT-----SCCEEEEEECHHH
T ss_pred HHHcCCCCHHHHHHHHHHHhCCccCCCcchHHHHHHHHHHCCCeEEEeeccCC-----CCCceEEEEChHH
Confidence 4568899988887764 58999999999999999999854433222 1235689988665
No 451
>1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} SCOP: a.4.5.1 b.34.1.1 d.104.1.2 PDB: 1bib_A* 1hxd_A* 2ewn_A*
Probab=20.71 E-value=1e+02 Score=29.78 Aligned_cols=45 Identities=9% Similarity=-0.012 Sum_probs=39.9
Q ss_pred HHHHHHHHHhcCCCcHHHHHHhcCCCHHHHHHHHHHHHhccccce
Q 010353 22 VAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQA 66 (512)
Q Consensus 22 v~~V~~~Ll~~G~ltl~~I~~~t~l~~~~Vr~aL~vLIQhn~V~~ 66 (512)
-.+|...|...+..|..+|++..+++.+.|++-|-.|-+.|++..
T Consensus 7 ~~~Il~~L~~~~~~s~~eLa~~l~vS~~ti~r~l~~L~~~G~~i~ 51 (321)
T 1bia_A 7 PLKLIALLANGEFHSGEQLGETLGMSRAAINKHIQTLRDWGVDVF 51 (321)
T ss_dssp HHHHHHHHTTSSCBCHHHHHHHHTSCHHHHHHHHHHHHHTTCCCE
T ss_pred HHHHHHHHHcCCCcCHHHHHHHHCCCHHHHHHHHHHHHhCCCcEE
Confidence 346777887778999999999999999999999999999998863
No 452
>3sxy_A Transcriptional regulator, GNTR family; transcription factor, metal-binding, structur genomics, PSI-2, protein structure initiative; 1.65A {Thermotoga maritima} PDB: 3dbw_A 3fms_A*
Probab=20.71 E-value=1e+02 Score=27.58 Aligned_cols=36 Identities=17% Similarity=0.233 Sum_probs=32.0
Q ss_pred CCCcchhhhhhhcCCCcccHHHHHHHHhhcccceEE
Q 010353 383 GRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLME 418 (512)
Q Consensus 383 ~~l~eek~i~~~ami~~k~~r~~Ly~L~~~g~v~~Q 418 (512)
|.-+.|.+|++.-.++..-+|+.|..|..+|+|+..
T Consensus 33 G~~L~e~~La~~lgVSRtpVREAL~~L~~eGlv~~~ 68 (218)
T 3sxy_A 33 GEKLNVRELSEKLGISFTPVRDALLQLATEGLVKVV 68 (218)
T ss_dssp TCEECHHHHHHHHTCCHHHHHHHHHHHHHHTSEEEE
T ss_pred CCEeCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEe
Confidence 433399999999999999999999999999999655
No 453
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=20.70 E-value=87 Score=24.06 Aligned_cols=38 Identities=13% Similarity=0.262 Sum_probs=31.2
Q ss_pred HHHHHHHHHhcCCCcchhhhhhhcCCCcccHHHHHHHHhhc
Q 010353 372 AYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKD 412 (512)
Q Consensus 372 ~~Ri~r~l~~~~~l~eek~i~~~ami~~k~~r~~Ly~L~~~ 412 (512)
-..|++++. . .+ ..++|++...++.+.++..+.++++.
T Consensus 34 E~~Vl~l~~-~-G~-s~~eIA~~L~iS~~TV~~~~~~i~~K 71 (90)
T 3ulq_B 34 ECLILQEVE-K-GF-TNQEIADALHLSKRSIEYSLTSIFNK 71 (90)
T ss_dssp HHHHHHHHH-T-TC-CHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-c-CC-CHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 345777776 3 67 99999999999999999999988653
No 454
>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A
Probab=20.50 E-value=2.4e+02 Score=25.03 Aligned_cols=57 Identities=18% Similarity=0.223 Sum_probs=46.6
Q ss_pred HHHHHHHhhhchhHHHHHHHHHhc----------C------CCcHHHHHHhcCCCH-HHHHHHHHHHHhccccc
Q 010353 9 HAVHVITNHFGDLVAKVCECLLRK----------G------PLTRQNVKRYTELSD-EQVKNALLVLIQQNCVQ 65 (512)
Q Consensus 9 Lc~~iv~~~FG~~v~~V~~~Ll~~----------G------~ltl~~I~~~t~l~~-~~Vr~aL~vLIQhn~V~ 65 (512)
+...+..-.+.+.-++|+..|+.. | ++|-.+|+...|+++ ..|-..|--|.+.|++.
T Consensus 128 ~~~~~~~~~~~~~~~Rla~~L~~l~~~~g~~~~~~~~i~~~~~t~~~lA~~lG~sr~etvsR~l~~l~~~glI~ 201 (238)
T 2bgc_A 128 SLAKFNDFSINGKLGSICSQLLILTYVYGKETPDGIKITLDNLTMQELGYSSGIAHSSAVSRIISKLKQEKVIV 201 (238)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHHHHHHEEEETTEEEECCSCCCHHHHHHHTTCCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHhCCCCCCceEEEeccCCHHHHHHHhCCChHHHHHHHHHHHHHCCCEE
Confidence 334445556788889999999751 1 678899999999999 59999999999999997
No 455
>3edp_A LIN2111 protein; APC88337, listeria innocua CLIP11262, structural GE PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 2.09A {Listeria innocua}
Probab=20.49 E-value=83 Score=28.93 Aligned_cols=32 Identities=13% Similarity=0.226 Sum_probs=28.8
Q ss_pred CC-cHHHHHHhcCCCHHHHHHHHHHHHhccccc
Q 010353 34 PL-TRQNVKRYTELSDEQVKNALLVLIQQNCVQ 65 (512)
Q Consensus 34 ~l-tl~~I~~~t~l~~~~Vr~aL~vLIQhn~V~ 65 (512)
++ |-.+|+...+++...||+||-.|.+.|+|.
T Consensus 32 ~lPse~~La~~~~vSr~tvr~Al~~L~~~G~i~ 64 (236)
T 3edp_A 32 LMPNETALQEIYSSSRTTIRRAVDLLVEEGLVV 64 (236)
T ss_dssp --CCHHHHHHHTTCCHHHHHHHHHHHHHTTSEE
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEE
Confidence 55 688999999999999999999999999997
No 456
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=20.36 E-value=1.3e+02 Score=19.34 Aligned_cols=30 Identities=20% Similarity=0.282 Sum_probs=22.7
Q ss_pred HHHHHHHhcCCCcHHHHHHhcCCCHHHHHHHH
Q 010353 24 KVCECLLRKGPLTRQNVKRYTELSDEQVKNAL 55 (512)
Q Consensus 24 ~V~~~Ll~~G~ltl~~I~~~t~l~~~~Vr~aL 55 (512)
.|.. |...| .|..+|++.++++...|..-+
T Consensus 13 ~i~~-l~~~g-~s~~~ia~~lgvs~~Tv~r~l 42 (52)
T 1jko_C 13 QISR-LLEKG-HPRQQLAIIFGIGVSTLYRYF 42 (52)
T ss_dssp HHHH-HHHTT-CCHHHHHHTTSCCHHHHHHHS
T ss_pred HHHH-HHHcC-CCHHHHHHHHCCCHHHHHHHH
Confidence 3444 34567 799999999999999887643
No 457
>1u5t_B Defective in vacuolar protein sorting; VPS36P; ESCRT, endosomal, trafficking, protein complex, transport protein; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54
Probab=20.25 E-value=76 Score=27.85 Aligned_cols=46 Identities=11% Similarity=0.091 Sum_probs=37.4
Q ss_pred hhHHHHHHHHHhc-CC----CcHH-H-HHHhcCCCHHHHHHHHHHHHhccccc
Q 010353 20 DLVAKVCECLLRK-GP----LTRQ-N-VKRYTELSDEQVKNALLVLIQQNCVQ 65 (512)
Q Consensus 20 ~~v~~V~~~Ll~~-G~----ltl~-~-I~~~t~l~~~~Vr~aL~vLIQhn~V~ 65 (512)
++.++|.+.+-.. |. .|-. + +.+..+.+....+..|-.+++.|+++
T Consensus 99 ~~~~~il~~~~~~~g~d~~~vt~~~~~la~~~~ws~~~a~e~L~~~e~~G~l~ 151 (169)
T 1u5t_B 99 VVKEKLVDLIGDNPGSDLLRLTQILSSNNSKSNWTLGILMEVLQNCVDEGDLL 151 (169)
T ss_dssp HHHHHHHHHHHHSCSBCHHHHHHHHHTSCTTCCCCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHHHHHHHHhcCCCCcccccHHHHHHHHHhCCCHHHHHHHHHHHHHcCCEE
Confidence 3455666666555 66 6777 8 88889999999999999999999997
No 458
>4fx0_A Probable transcriptional repressor protein; helix-turn-helix, DNA binding, transcription regulator; 2.70A {Mycobacterium tuberculosis} PDB: 4fx4_A*
Probab=20.16 E-value=1.4e+02 Score=24.82 Aligned_cols=43 Identities=19% Similarity=0.261 Sum_probs=34.7
Q ss_pred HHHHHHHHhc-----CCCcchhhhhhhcCCCcccHHHHHHHHhhcccce
Q 010353 373 YRIFRLLSKS-----GRLLETDKISDTTFVEKKDAPKILYKLWKDGYLL 416 (512)
Q Consensus 373 ~Ri~r~l~~~-----~~l~eek~i~~~ami~~k~~r~~Ly~L~~~g~v~ 416 (512)
++|+..|... +.+ .+.+|++...++...+-.++.+|.+.|||.
T Consensus 36 ~~vL~~l~~~~~~~~~~~-t~~eLa~~l~~~~~tvsr~v~~Le~~glVr 83 (148)
T 4fx0_A 36 FSTLAVISLSEGSAGIDL-TMSELAARIGVERTTLTRNLEVMRRDGLVR 83 (148)
T ss_dssp HHHHHHHHC----------CHHHHHHHHTCCHHHHHHHHHHHHHTTSBC
T ss_pred HHHHHHHHHhcCCCCCCc-CHHHHHHHHCCChhhHHHHHHHHHHCCCEE
Confidence 5667777543 236 999999999999999999999999999994
No 459
>2hs5_A Putative transcriptional regulator GNTR; APC6050, rhodococcus SP. RH structural genomics, PSI-2, protein structure initiative; 2.20A {Rhodococcus SP} SCOP: a.4.5.6 a.78.1.1
Probab=20.11 E-value=77 Score=29.11 Aligned_cols=32 Identities=22% Similarity=0.376 Sum_probs=30.6
Q ss_pred CCcHHHHHHhcCCCHHHHHHHHHHHHhccccc
Q 010353 34 PLTRQNVKRYTELSDEQVKNALLVLIQQNCVQ 65 (512)
Q Consensus 34 ~ltl~~I~~~t~l~~~~Vr~aL~vLIQhn~V~ 65 (512)
+++-.+|+...+++...||.||..|.+.|+|.
T Consensus 51 ~L~e~~La~~lgVSRtpVREAL~~L~~eGlv~ 82 (239)
T 2hs5_A 51 RLSEPDICAALDVSRNTVREAFQILIEDRLVA 82 (239)
T ss_dssp EECHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred EeCHHHHHHHHCCCHHHHHHHHHHHHHCCCEE
Confidence 67899999999999999999999999999998
No 460
>1stz_A Heat-inducible transcription repressor HRCA homol; circe element, structural genomics, BSGC structure FUN NIH, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.51 d.110.2.3
Probab=20.06 E-value=1.3e+02 Score=29.34 Aligned_cols=38 Identities=21% Similarity=0.296 Sum_probs=35.4
Q ss_pred HHHhcCCCcHHHHHHhc--CCCHHHHHHHHHHHHhccccc
Q 010353 28 CLLRKGPLTRQNVKRYT--ELSDEQVKNALLVLIQQNCVQ 65 (512)
Q Consensus 28 ~Ll~~G~ltl~~I~~~t--~l~~~~Vr~aL~vLIQhn~V~ 65 (512)
+|-..|+.+..+|++.. ++|+..||+-|..|-+.|++.
T Consensus 30 yl~~~~pV~s~~La~~~~l~VS~aTIRrDL~~LE~~GlL~ 69 (338)
T 1stz_A 30 YIENKKPVSSQRVLEVSNIEFSSATIRNDMKKLEYLGYIY 69 (338)
T ss_dssp HHHHCSCBCHHHHHHHSCCCSCHHHHHHHHHHHHHTTSEE
T ss_pred HHHcCCCccHHHHHHHhCCCCCHHHHHHHHHHHHHCCCEE
Confidence 67778999999999998 899999999999999999996
No 461
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Probab=20.05 E-value=2e+02 Score=25.19 Aligned_cols=33 Identities=21% Similarity=0.176 Sum_probs=30.3
Q ss_pred CCcchhhhhhhcCCCcccHHHHHHHHhhcccceE
Q 010353 384 RLLETDKISDTTFVEKKDAPKILYKLWKDGYLLM 417 (512)
Q Consensus 384 ~l~eek~i~~~ami~~k~~r~~Ly~L~~~g~v~~ 417 (512)
.+ .+++||+...++...+-.+|.+|.++|+|..
T Consensus 167 ~~-t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~ 199 (220)
T 2fmy_A 167 GL-NTEEIALMLGTTRQTVSVLLNDFKKMGILER 199 (220)
T ss_dssp SS-CHHHHHHHHTSCHHHHHHHHHHHHHTTSEEE
T ss_pred cC-CHHHHHHHhCCcHHHHHHHHHHHHHCCCEEE
Confidence 35 8999999999999999999999999999943
Done!