Query 010355
Match_columns 512
No_of_seqs 500 out of 3563
Neff 9.4
Searched_HMMs 46136
Date Thu Mar 28 23:33:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010355.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010355hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 1E-53 2.3E-58 461.8 30.9 414 32-467 21-473 (889)
2 PF00931 NB-ARC: NB-ARC domain 100.0 2.1E-42 4.5E-47 337.8 18.3 267 154-422 1-285 (287)
3 PLN03210 Resistant to P. syrin 100.0 5.8E-33 1.3E-37 315.7 26.3 278 146-436 181-483 (1153)
4 TIGR03015 pepcterm_ATPase puta 99.4 3.5E-11 7.6E-16 116.2 22.8 181 167-350 40-242 (269)
5 PRK00411 cdc6 cell division co 99.4 3.9E-11 8.4E-16 122.6 23.6 236 148-400 29-303 (394)
6 PRK04841 transcriptional regul 99.4 1.4E-11 3E-16 139.5 21.3 241 145-407 10-281 (903)
7 PF01637 Arch_ATPase: Archaeal 99.4 1.8E-12 3.9E-17 122.2 11.1 192 151-345 1-233 (234)
8 TIGR02928 orc1/cdc6 family rep 99.4 1.9E-10 4.2E-15 116.2 24.4 238 149-400 15-295 (365)
9 PF05729 NACHT: NACHT domain 99.3 3E-11 6.6E-16 107.4 12.7 142 171-317 1-164 (166)
10 TIGR00635 ruvB Holliday juncti 99.2 9.1E-10 2E-14 108.4 17.9 265 148-434 3-286 (305)
11 COG2256 MGS1 ATPase related to 99.1 8.9E-10 1.9E-14 106.4 14.3 174 145-341 20-207 (436)
12 PRK00080 ruvB Holliday junctio 99.1 2.5E-09 5.4E-14 106.1 18.0 193 145-349 21-225 (328)
13 COG3899 Predicted ATPase [Gene 99.1 1.5E-09 3.3E-14 119.4 15.2 253 150-410 1-328 (849)
14 PRK13342 recombination factor 99.1 2.5E-09 5.5E-14 109.3 15.6 182 145-350 8-200 (413)
15 COG2909 MalT ATP-dependent tra 99.0 1.2E-08 2.5E-13 107.3 16.2 234 145-400 15-278 (894)
16 PRK06893 DNA replication initi 98.9 1.3E-08 2.9E-13 95.4 13.7 154 168-350 37-207 (229)
17 PTZ00112 origin recognition co 98.9 1.1E-07 2.4E-12 100.9 21.0 169 148-317 754-950 (1164)
18 PF13401 AAA_22: AAA domain; P 98.9 4.6E-09 9.9E-14 89.5 8.3 116 169-284 3-125 (131)
19 PRK07003 DNA polymerase III su 98.9 7.4E-08 1.6E-12 101.6 17.4 182 145-348 12-223 (830)
20 PRK14949 DNA polymerase III su 98.9 1.5E-07 3.3E-12 101.2 19.6 182 145-344 12-218 (944)
21 PRK12402 replication factor C 98.9 8.7E-08 1.9E-12 95.7 17.1 203 145-348 11-228 (337)
22 TIGR03420 DnaA_homol_Hda DnaA 98.8 2.7E-08 5.9E-13 93.3 12.0 169 154-350 22-205 (226)
23 PTZ00202 tuzin; Provisional 98.8 1.9E-07 4E-12 92.3 17.7 167 141-316 254-434 (550)
24 COG3903 Predicted ATPase [Gene 98.8 1.1E-08 2.3E-13 99.7 8.2 239 169-418 13-267 (414)
25 COG1474 CDC6 Cdc6-related prot 98.8 4E-07 8.8E-12 90.6 19.3 195 150-346 18-238 (366)
26 PRK00440 rfc replication facto 98.8 3.7E-07 8E-12 90.4 18.3 186 145-347 13-204 (319)
27 KOG2028 ATPase related to the 98.8 5E-08 1.1E-12 92.8 11.2 150 148-316 137-294 (554)
28 PF05496 RuvB_N: Holliday junc 98.8 3.4E-08 7.4E-13 89.4 9.7 179 144-351 19-226 (233)
29 PRK04195 replication factor C 98.8 1.1E-07 2.3E-12 99.3 14.8 180 145-345 10-201 (482)
30 PRK14961 DNA polymerase III su 98.8 2.6E-07 5.7E-12 92.8 16.9 181 145-347 12-221 (363)
31 PRK05564 DNA polymerase III su 98.8 2.7E-07 5.9E-12 91.0 16.5 175 149-345 4-189 (313)
32 PRK12323 DNA polymerase III su 98.8 1.4E-07 3.1E-12 98.2 14.7 180 145-346 12-225 (700)
33 PLN03025 replication factor C 98.7 4.4E-07 9.6E-12 89.6 16.7 184 145-344 9-198 (319)
34 PRK09112 DNA polymerase III su 98.7 8E-07 1.7E-11 88.2 18.0 195 145-347 19-241 (351)
35 cd00009 AAA The AAA+ (ATPases 98.7 1.8E-07 3.9E-12 80.8 12.0 121 152-286 1-131 (151)
36 PRK14963 DNA polymerase III su 98.7 4.1E-07 8.9E-12 94.5 16.3 193 145-344 10-215 (504)
37 PRK06645 DNA polymerase III su 98.7 4.7E-07 1E-11 93.7 16.5 179 145-345 17-228 (507)
38 PRK14960 DNA polymerase III su 98.7 4.7E-07 1E-11 94.6 16.3 179 145-345 11-218 (702)
39 PRK13341 recombination factor 98.7 3.5E-07 7.6E-12 98.6 15.5 174 145-342 24-213 (725)
40 PF14516 AAA_35: AAA-like doma 98.7 3.3E-06 7.2E-11 83.6 21.4 201 145-353 7-246 (331)
41 PF13173 AAA_14: AAA domain 98.7 7.1E-08 1.5E-12 81.8 7.7 119 170-308 2-127 (128)
42 PRK14962 DNA polymerase III su 98.7 8.2E-07 1.8E-11 91.5 16.8 188 145-350 10-223 (472)
43 PRK07471 DNA polymerase III su 98.7 1.1E-06 2.4E-11 87.6 17.3 194 145-347 15-239 (365)
44 PRK14956 DNA polymerase III su 98.7 3.5E-07 7.5E-12 92.9 13.7 197 145-345 14-221 (484)
45 PF13191 AAA_16: AAA ATPase do 98.7 8.7E-08 1.9E-12 86.8 8.5 48 150-197 1-51 (185)
46 PRK08727 hypothetical protein; 98.6 4.7E-07 1E-11 85.1 13.5 170 148-345 18-203 (233)
47 PF05621 TniB: Bacterial TniB 98.6 1.6E-06 3.4E-11 82.4 16.4 192 155-346 43-261 (302)
48 PRK07994 DNA polymerase III su 98.6 7.2E-07 1.6E-11 94.4 15.4 194 145-346 12-220 (647)
49 PRK14957 DNA polymerase III su 98.6 2E-06 4.2E-11 89.7 18.0 185 145-347 12-222 (546)
50 TIGR02397 dnaX_nterm DNA polym 98.6 4.9E-06 1.1E-10 83.8 20.6 184 146-348 11-220 (355)
51 PRK14951 DNA polymerase III su 98.6 9.1E-07 2E-11 93.4 15.7 197 145-346 12-225 (618)
52 PRK08691 DNA polymerase III su 98.6 1.1E-06 2.5E-11 92.6 15.9 180 145-346 12-220 (709)
53 PRK09087 hypothetical protein; 98.6 1.5E-06 3.2E-11 81.1 15.0 145 169-350 43-199 (226)
54 PRK14958 DNA polymerase III su 98.6 1.3E-06 2.8E-11 91.0 16.2 184 145-346 12-220 (509)
55 PRK08084 DNA replication initi 98.6 9.9E-07 2.1E-11 83.0 14.0 166 157-350 32-213 (235)
56 PRK07940 DNA polymerase III su 98.6 2.3E-06 4.9E-11 86.2 16.8 169 148-346 4-213 (394)
57 PRK14964 DNA polymerase III su 98.6 2.6E-06 5.5E-11 87.6 16.9 183 145-345 9-216 (491)
58 TIGR01242 26Sp45 26S proteasom 98.6 2.3E-06 5E-11 86.2 16.4 172 147-340 120-328 (364)
59 cd01128 rho_factor Transcripti 98.6 2E-07 4.4E-12 87.7 8.1 92 169-261 15-115 (249)
60 TIGR03345 VI_ClpV1 type VI sec 98.5 9.6E-07 2.1E-11 97.6 14.5 182 146-340 184-390 (852)
61 PRK05896 DNA polymerase III su 98.5 2.1E-06 4.6E-11 89.7 15.9 195 145-347 12-222 (605)
62 PRK07764 DNA polymerase III su 98.5 2.1E-06 4.6E-11 93.8 16.7 178 145-344 11-219 (824)
63 PRK14969 DNA polymerase III su 98.5 2.3E-06 4.9E-11 89.8 16.3 180 146-343 13-217 (527)
64 PRK08903 DnaA regulatory inact 98.5 1.4E-06 2.9E-11 81.9 13.0 172 148-351 17-204 (227)
65 PRK14959 DNA polymerase III su 98.5 1.1E-05 2.3E-10 84.9 19.6 184 145-350 12-225 (624)
66 PRK14087 dnaA chromosomal repl 98.5 5.5E-06 1.2E-10 85.3 17.1 183 170-366 141-349 (450)
67 TIGR02903 spore_lon_C ATP-depe 98.5 3.6E-06 7.9E-11 90.0 16.3 202 146-349 151-398 (615)
68 PRK03992 proteasome-activating 98.5 3E-06 6.5E-11 85.9 14.8 170 148-339 130-336 (389)
69 PRK14955 DNA polymerase III su 98.5 3.1E-06 6.7E-11 86.1 14.9 200 145-345 12-227 (397)
70 TIGR00678 holB DNA polymerase 98.5 7.1E-06 1.5E-10 74.5 15.5 158 160-342 3-187 (188)
71 KOG2227 Pre-initiation complex 98.5 7.5E-06 1.6E-10 81.0 16.4 193 146-339 147-361 (529)
72 TIGR02639 ClpA ATP-dependent C 98.4 2.7E-06 5.9E-11 93.3 14.7 159 146-316 179-358 (731)
73 PRK09111 DNA polymerase III su 98.4 6.6E-06 1.4E-10 87.1 16.9 198 145-347 20-234 (598)
74 PRK14952 DNA polymerase III su 98.4 7.3E-06 1.6E-10 86.3 17.0 189 145-341 9-214 (584)
75 PRK07133 DNA polymerase III su 98.4 5.7E-06 1.2E-10 88.3 15.8 177 145-343 14-216 (725)
76 PRK14970 DNA polymerase III su 98.4 1.3E-05 2.9E-10 80.9 17.8 181 145-343 13-206 (367)
77 PRK05642 DNA replication initi 98.4 5.2E-06 1.1E-10 78.1 13.4 153 170-350 45-212 (234)
78 PRK14953 DNA polymerase III su 98.4 1.9E-05 4.1E-10 82.0 18.1 178 146-347 13-221 (486)
79 PF00308 Bac_DnaA: Bacterial d 98.4 2.5E-06 5.4E-11 79.3 10.5 163 170-349 34-211 (219)
80 PRK09376 rho transcription ter 98.4 1.4E-06 3E-11 85.8 8.9 100 161-261 159-268 (416)
81 PRK14954 DNA polymerase III su 98.4 1.3E-05 2.9E-10 84.9 16.7 197 145-342 12-224 (620)
82 CHL00095 clpC Clp protease ATP 98.4 4.4E-06 9.5E-11 92.8 13.6 156 148-315 178-353 (821)
83 PRK14950 DNA polymerase III su 98.3 1.6E-05 3.4E-10 84.9 17.0 196 145-347 12-222 (585)
84 TIGR03689 pup_AAA proteasome A 98.3 1.8E-05 3.9E-10 81.8 16.7 159 147-318 180-380 (512)
85 PRK06305 DNA polymerase III su 98.3 2.3E-05 4.9E-10 80.8 17.0 178 145-341 13-217 (451)
86 KOG2543 Origin recognition com 98.3 2.7E-05 5.9E-10 75.2 16.1 196 148-350 5-230 (438)
87 PF05673 DUF815: Protein of un 98.3 3.3E-05 7.2E-10 71.2 15.8 53 145-197 23-79 (249)
88 PRK08451 DNA polymerase III su 98.3 3.6E-05 7.8E-10 80.0 18.0 182 145-346 10-218 (535)
89 PRK14971 DNA polymerase III su 98.3 3.1E-05 6.8E-10 82.6 18.0 180 146-344 14-220 (614)
90 PHA02544 44 clamp loader, smal 98.3 7.3E-06 1.6E-10 81.1 12.3 147 145-314 17-171 (316)
91 TIGR03346 chaperone_ClpB ATP-d 98.3 1.4E-05 3.1E-10 89.0 15.1 157 147-316 171-349 (852)
92 TIGR00362 DnaA chromosomal rep 98.2 5E-05 1.1E-09 77.8 17.5 179 170-365 136-337 (405)
93 TIGR00767 rho transcription te 98.2 5.7E-06 1.2E-10 81.9 10.0 92 169-261 167-267 (415)
94 PRK10865 protein disaggregatio 98.2 1.1E-05 2.4E-10 89.5 13.5 158 146-316 175-354 (857)
95 KOG0989 Replication factor C, 98.2 7.6E-06 1.7E-10 76.8 10.2 184 144-340 31-224 (346)
96 COG2255 RuvB Holliday junction 98.2 2.6E-05 5.6E-10 72.6 13.2 221 145-395 22-280 (332)
97 PRK14965 DNA polymerase III su 98.2 3.4E-05 7.5E-10 82.0 16.3 180 145-346 12-221 (576)
98 PRK00149 dnaA chromosomal repl 98.2 5.1E-05 1.1E-09 78.7 17.3 179 170-365 148-349 (450)
99 PRK06647 DNA polymerase III su 98.2 4.1E-05 8.8E-10 80.8 16.5 193 145-345 12-219 (563)
100 PRK05563 DNA polymerase III su 98.2 7.4E-05 1.6E-09 79.1 18.5 192 145-344 12-218 (559)
101 PTZ00454 26S protease regulato 98.2 4.2E-05 9.1E-10 77.3 15.8 172 147-340 143-351 (398)
102 PRK14948 DNA polymerase III su 98.2 4.5E-05 9.7E-10 81.4 16.6 195 146-346 13-222 (620)
103 COG1222 RPT1 ATP-dependent 26S 98.2 0.00011 2.5E-09 70.6 16.5 182 148-351 150-372 (406)
104 PRK11331 5-methylcytosine-spec 98.2 1.7E-05 3.7E-10 79.9 11.6 108 149-261 175-284 (459)
105 PRK14088 dnaA chromosomal repl 98.2 0.00011 2.5E-09 75.5 18.0 180 170-365 130-332 (440)
106 PRK14086 dnaA chromosomal repl 98.2 6E-05 1.3E-09 79.0 16.0 178 171-365 315-515 (617)
107 TIGR02881 spore_V_K stage V sp 98.2 2.4E-05 5.3E-10 75.0 12.3 133 169-317 41-192 (261)
108 PRK06620 hypothetical protein; 98.1 1.9E-05 4.1E-10 73.0 10.6 138 171-347 45-190 (214)
109 PRK11034 clpA ATP-dependent Cl 98.1 1.1E-05 2.4E-10 87.7 10.3 157 148-316 185-362 (758)
110 PRK07399 DNA polymerase III su 98.1 0.00019 4.1E-09 70.4 17.8 193 149-348 4-223 (314)
111 TIGR01241 FtsH_fam ATP-depende 98.1 7.4E-05 1.6E-09 78.5 16.0 199 146-366 52-296 (495)
112 PTZ00361 26 proteosome regulat 98.1 4.3E-05 9.4E-10 77.8 13.4 171 147-339 181-388 (438)
113 CHL00181 cbbX CbbX; Provisiona 98.1 9.6E-05 2.1E-09 71.5 15.1 131 171-317 60-210 (287)
114 KOG0991 Replication factor C, 98.1 6.9E-05 1.5E-09 67.6 12.8 103 145-261 23-125 (333)
115 PRK05707 DNA polymerase III su 98.1 0.00015 3.3E-09 71.5 16.2 152 170-346 22-203 (328)
116 TIGR02880 cbbX_cfxQ probable R 98.1 8E-05 1.7E-09 72.1 13.9 130 172-317 60-209 (284)
117 CHL00176 ftsH cell division pr 98.0 0.00014 3.1E-09 77.7 16.0 195 149-365 183-423 (638)
118 TIGR00602 rad24 checkpoint pro 98.0 2.7E-05 5.9E-10 82.6 10.0 52 144-195 79-135 (637)
119 smart00382 AAA ATPases associa 98.0 3.4E-05 7.3E-10 65.8 9.1 89 170-261 2-90 (148)
120 PRK12422 chromosomal replicati 97.9 0.00024 5.1E-09 73.1 15.5 177 170-365 141-343 (445)
121 KOG0733 Nuclear AAA ATPase (VC 97.9 0.00028 6.1E-09 72.2 15.5 170 148-339 189-395 (802)
122 PF10443 RNA12: RNA12 protein; 97.9 0.00079 1.7E-08 67.1 17.7 192 154-353 1-285 (431)
123 COG1373 Predicted ATPase (AAA+ 97.9 0.00024 5.1E-09 72.1 13.9 134 154-311 22-162 (398)
124 PRK08769 DNA polymerase III su 97.8 0.00085 1.8E-08 65.6 16.7 170 157-347 12-209 (319)
125 COG3267 ExeA Type II secretory 97.8 0.0012 2.5E-08 61.0 16.3 187 157-349 39-248 (269)
126 PRK08116 hypothetical protein; 97.8 7.8E-05 1.7E-09 71.4 9.3 100 171-285 115-221 (268)
127 KOG0733 Nuclear AAA ATPase (VC 97.8 0.00067 1.5E-08 69.5 15.9 129 169-317 544-693 (802)
128 PF00004 AAA: ATPase family as 97.8 3.5E-05 7.5E-10 65.3 5.9 68 173-260 1-69 (132)
129 TIGR00763 lon ATP-dependent pr 97.8 0.002 4.3E-08 71.5 21.1 155 150-316 321-505 (775)
130 PRK06871 DNA polymerase III su 97.8 0.0017 3.6E-08 63.7 17.9 171 158-343 11-200 (325)
131 KOG0731 AAA+-type ATPase conta 97.8 0.00046 1E-08 73.5 14.1 168 155-343 320-521 (774)
132 PRK10787 DNA-binding ATP-depen 97.8 0.0019 4.2E-08 71.0 19.4 156 149-316 322-506 (784)
133 PHA00729 NTP-binding motif con 97.7 0.00025 5.3E-09 65.2 10.1 36 160-195 7-42 (226)
134 PRK10536 hypothetical protein; 97.7 0.00053 1.1E-08 64.2 12.1 55 148-204 54-108 (262)
135 TIGR01243 CDC48 AAA family ATP 97.7 0.00092 2E-08 73.8 16.1 171 148-340 452-657 (733)
136 PRK12608 transcription termina 97.7 0.00041 8.9E-09 68.5 11.8 101 159-260 121-231 (380)
137 PRK08939 primosomal protein Dn 97.7 0.0028 6E-08 61.9 17.5 114 153-284 135-260 (306)
138 COG1223 Predicted ATPase (AAA+ 97.7 0.00065 1.4E-08 62.5 12.0 170 148-339 120-318 (368)
139 COG0593 DnaA ATPase involved i 97.7 0.0012 2.7E-08 66.0 15.0 180 169-368 112-316 (408)
140 PRK12377 putative replication 97.7 0.00016 3.4E-09 68.2 8.3 74 169-259 100-173 (248)
141 PRK06090 DNA polymerase III su 97.7 0.0055 1.2E-07 60.0 19.1 159 158-346 12-201 (319)
142 PRK08058 DNA polymerase III su 97.7 0.0016 3.5E-08 64.6 15.7 142 150-315 6-181 (329)
143 KOG2004 Mitochondrial ATP-depe 97.7 0.0021 4.5E-08 67.3 16.5 153 148-316 410-596 (906)
144 TIGR03345 VI_ClpV1 type VI sec 97.7 0.00053 1.2E-08 76.2 13.3 105 149-260 566-679 (852)
145 TIGR02640 gas_vesic_GvpN gas v 97.6 0.0016 3.5E-08 62.3 15.0 55 157-218 10-64 (262)
146 COG0466 Lon ATP-dependent Lon 97.6 0.00021 4.6E-09 74.6 9.3 155 149-316 323-508 (782)
147 CHL00195 ycf46 Ycf46; Provisio 97.6 0.00078 1.7E-08 69.8 13.1 151 169-339 258-428 (489)
148 cd01120 RecA-like_NTPases RecA 97.6 0.00046 1E-08 60.6 9.7 39 172-212 1-39 (165)
149 KOG0743 AAA+-type ATPase [Post 97.6 0.012 2.6E-07 58.8 20.0 151 171-353 236-417 (457)
150 PF04665 Pox_A32: Poxvirus A32 97.6 0.00068 1.5E-08 63.1 10.7 36 171-208 14-49 (241)
151 PRK06921 hypothetical protein; 97.6 0.00031 6.6E-09 67.3 8.7 71 169-258 116-186 (266)
152 PLN00020 ribulose bisphosphate 97.6 0.0039 8.4E-08 61.2 16.1 29 168-196 146-174 (413)
153 COG2812 DnaX DNA polymerase II 97.6 0.00071 1.5E-08 69.7 11.6 189 145-341 12-215 (515)
154 TIGR01243 CDC48 AAA family ATP 97.5 0.0012 2.6E-08 72.8 14.0 171 148-340 177-381 (733)
155 KOG0730 AAA+-type ATPase [Post 97.5 0.0051 1.1E-07 64.0 17.3 132 168-319 466-618 (693)
156 PRK08118 topology modulation p 97.5 5.7E-05 1.2E-09 67.0 2.9 35 171-205 2-37 (167)
157 PF13177 DNA_pol3_delta2: DNA 97.5 0.0016 3.5E-08 57.4 12.1 133 153-304 1-162 (162)
158 PRK07993 DNA polymerase III su 97.5 0.0045 9.7E-08 61.3 16.3 160 158-344 11-202 (334)
159 PRK09354 recA recombinase A; P 97.5 0.00041 8.9E-09 68.2 8.6 83 170-259 60-148 (349)
160 TIGR02237 recomb_radB DNA repa 97.5 0.00052 1.1E-08 63.4 8.9 86 170-259 12-107 (209)
161 TIGR02639 ClpA ATP-dependent C 97.5 0.0012 2.7E-08 72.6 13.1 102 150-261 455-565 (731)
162 KOG2228 Origin recognition com 97.5 0.0017 3.8E-08 62.1 12.0 168 148-317 23-220 (408)
163 PRK07952 DNA replication prote 97.5 0.00056 1.2E-08 64.3 8.8 88 157-260 84-173 (244)
164 KOG0739 AAA+-type ATPase [Post 97.5 0.0023 4.9E-08 60.2 12.5 169 149-339 133-334 (439)
165 COG1484 DnaC DNA replication p 97.5 0.0004 8.7E-09 65.9 7.9 81 161-260 98-178 (254)
166 PRK06964 DNA polymerase III su 97.5 0.006 1.3E-07 60.3 16.3 99 237-346 116-225 (342)
167 KOG0734 AAA+-type ATPase conta 97.5 0.0011 2.5E-08 66.8 11.1 88 153-260 311-407 (752)
168 PRK08181 transposase; Validate 97.4 0.00081 1.8E-08 64.2 9.6 77 163-259 101-177 (269)
169 PF00448 SRP54: SRP54-type pro 97.4 0.00063 1.4E-08 61.9 8.4 87 170-258 1-92 (196)
170 cd01123 Rad51_DMC1_radA Rad51_ 97.4 0.00089 1.9E-08 63.1 9.6 89 170-259 19-125 (235)
171 PRK06835 DNA replication prote 97.4 0.0097 2.1E-07 58.6 17.1 99 171-285 184-289 (329)
172 KOG0741 AAA+-type ATPase [Post 97.4 0.0039 8.4E-08 63.1 14.1 157 168-350 536-716 (744)
173 TIGR03346 chaperone_ClpB ATP-d 97.4 0.0026 5.6E-08 71.2 14.6 106 149-261 565-679 (852)
174 PRK04296 thymidine kinase; Pro 97.4 0.00035 7.5E-09 63.5 6.2 111 171-287 3-118 (190)
175 PF07693 KAP_NTPase: KAP famil 97.4 0.012 2.7E-07 58.2 17.6 42 156-197 3-47 (325)
176 KOG1514 Origin recognition com 97.4 0.0094 2E-07 62.5 16.8 199 148-350 395-625 (767)
177 TIGR02902 spore_lonB ATP-depen 97.3 0.0016 3.5E-08 68.7 11.6 49 146-194 62-110 (531)
178 TIGR02012 tigrfam_recA protein 97.3 0.00095 2.1E-08 65.1 9.1 84 169-259 54-143 (321)
179 PRK10865 protein disaggregatio 97.3 0.0036 7.8E-08 69.9 14.6 105 149-260 568-681 (857)
180 TIGR03877 thermo_KaiC_1 KaiC d 97.3 0.0016 3.5E-08 61.4 10.3 49 169-221 20-68 (237)
181 PRK07261 topology modulation p 97.3 0.00079 1.7E-08 60.0 7.6 34 172-205 2-36 (171)
182 COG0542 clpA ATP-binding subun 97.3 0.0097 2.1E-07 64.2 16.6 103 150-260 492-604 (786)
183 PRK06526 transposase; Provisio 97.3 0.00044 9.5E-09 65.6 6.0 73 170-260 98-170 (254)
184 cd00983 recA RecA is a bacter 97.3 0.0011 2.4E-08 64.7 8.7 83 170-259 55-143 (325)
185 PF13207 AAA_17: AAA domain; P 97.3 0.00025 5.5E-09 59.1 3.5 24 172-195 1-24 (121)
186 cd00544 CobU Adenosylcobinamid 97.3 0.00054 1.2E-08 60.7 5.8 80 173-258 2-82 (169)
187 PRK10733 hflB ATP-dependent me 97.3 0.0048 1E-07 66.8 14.1 128 171-318 186-337 (644)
188 PRK11034 clpA ATP-dependent Cl 97.3 0.0021 4.6E-08 70.2 11.5 102 150-261 459-569 (758)
189 PRK00771 signal recognition pa 97.2 0.014 3E-07 59.7 16.4 59 169-229 94-153 (437)
190 PRK14722 flhF flagellar biosyn 97.2 0.0017 3.7E-08 64.7 9.6 88 170-259 137-225 (374)
191 TIGR03499 FlhF flagellar biosy 97.2 0.0021 4.5E-08 62.3 9.7 88 169-258 193-281 (282)
192 KOG0728 26S proteasome regulat 97.2 0.014 3E-07 53.6 14.1 129 168-316 179-331 (404)
193 PRK04132 replication factor C 97.2 0.01 2.2E-07 65.2 15.9 158 176-349 570-734 (846)
194 smart00763 AAA_PrkA PrkA AAA d 97.2 0.0007 1.5E-08 66.6 6.3 78 150-227 52-147 (361)
195 COG0470 HolB ATPase involved i 97.2 0.0066 1.4E-07 60.1 13.4 136 151-302 3-167 (325)
196 PRK04328 hypothetical protein; 97.2 0.0018 3.8E-08 61.5 8.8 53 169-226 22-74 (249)
197 COG0542 clpA ATP-binding subun 97.2 0.00057 1.2E-08 73.3 5.8 156 147-315 168-345 (786)
198 KOG0735 AAA+-type ATPase [Post 97.2 0.011 2.4E-07 62.0 14.6 151 170-342 701-872 (952)
199 PRK09183 transposase/IS protei 97.1 0.00093 2E-08 63.8 6.6 26 170-195 102-127 (259)
200 KOG1969 DNA replication checkp 97.1 0.0013 2.8E-08 68.9 7.9 75 168-261 324-399 (877)
201 COG2607 Predicted ATPase (AAA+ 97.1 0.0037 8E-08 57.1 9.9 52 146-197 57-112 (287)
202 PRK08533 flagellar accessory p 97.1 0.0029 6.3E-08 59.2 9.8 53 170-227 24-76 (230)
203 COG0464 SpoVK ATPases of the A 97.1 0.0044 9.6E-08 65.3 12.2 130 169-318 275-425 (494)
204 PTZ00494 tuzin-like protein; P 97.1 0.055 1.2E-06 54.3 18.5 165 143-316 365-544 (664)
205 PRK08699 DNA polymerase III su 97.1 0.0091 2E-07 58.9 13.5 152 169-343 20-203 (325)
206 TIGR02238 recomb_DMC1 meiotic 97.1 0.0021 4.7E-08 62.9 8.9 89 170-259 96-201 (313)
207 cd01393 recA_like RecA is a b 97.1 0.0036 7.7E-08 58.6 10.1 49 170-218 19-71 (226)
208 COG1066 Sms Predicted ATP-depe 97.1 0.0022 4.8E-08 63.1 8.7 84 170-259 93-178 (456)
209 KOG0735 AAA+-type ATPase [Post 97.1 0.0061 1.3E-07 63.8 12.1 158 169-345 430-615 (952)
210 PF01695 IstB_IS21: IstB-like 97.1 0.0028 6E-08 56.8 8.6 74 169-260 46-119 (178)
211 PLN03187 meiotic recombination 97.1 0.0034 7.3E-08 62.1 9.9 89 170-259 126-231 (344)
212 CHL00095 clpC Clp protease ATP 97.1 0.003 6.6E-08 70.5 10.6 105 149-260 509-622 (821)
213 PHA02244 ATPase-like protein 97.1 0.0075 1.6E-07 59.5 12.0 35 159-195 110-144 (383)
214 PRK09361 radB DNA repair and r 97.0 0.0027 5.9E-08 59.4 8.6 44 170-216 23-66 (225)
215 PRK06696 uridine kinase; Valid 97.0 0.00097 2.1E-08 62.3 5.5 44 153-196 2-48 (223)
216 KOG2035 Replication factor C, 97.0 0.026 5.6E-07 52.8 14.3 206 148-367 12-260 (351)
217 PF08423 Rad51: Rad51; InterP 97.0 0.0041 8.9E-08 59.2 9.6 89 170-259 38-143 (256)
218 PRK11889 flhF flagellar biosyn 97.0 0.0072 1.6E-07 60.1 11.3 89 169-259 240-330 (436)
219 KOG0736 Peroxisome assembly fa 97.0 0.029 6.3E-07 59.5 16.0 95 147-261 670-776 (953)
220 PRK05541 adenylylsulfate kinas 97.0 0.0022 4.8E-08 57.4 7.1 37 169-207 6-42 (176)
221 TIGR01425 SRP54_euk signal rec 97.0 0.057 1.2E-06 54.9 17.6 28 169-196 99-126 (429)
222 cd01121 Sms Sms (bacterial rad 96.9 0.0041 8.8E-08 62.4 9.0 85 170-259 82-168 (372)
223 PRK12727 flagellar biosynthesi 96.9 0.0074 1.6E-07 62.4 10.9 88 170-259 350-438 (559)
224 TIGR02236 recomb_radA DNA repa 96.9 0.0061 1.3E-07 60.0 10.1 57 170-227 95-155 (310)
225 PRK13531 regulatory ATPase Rav 96.9 0.0027 5.9E-08 64.8 7.6 49 150-200 21-69 (498)
226 COG1419 FlhF Flagellar GTP-bin 96.9 0.011 2.4E-07 58.7 11.5 101 157-259 186-291 (407)
227 PRK12726 flagellar biosynthesi 96.9 0.0075 1.6E-07 59.8 10.3 89 169-259 205-295 (407)
228 COG1618 Predicted nucleotide k 96.9 0.0014 3E-08 56.1 4.4 28 171-198 6-33 (179)
229 cd01394 radB RadB. The archaea 96.9 0.0047 1E-07 57.4 8.5 41 170-212 19-59 (218)
230 cd01124 KaiC KaiC is a circadi 96.9 0.0037 8E-08 56.5 7.6 109 172-285 1-140 (187)
231 COG0541 Ffh Signal recognition 96.9 0.14 3E-06 51.3 18.7 60 169-230 99-159 (451)
232 PF10236 DAP3: Mitochondrial r 96.8 0.12 2.6E-06 50.7 18.3 47 297-343 258-306 (309)
233 cd01133 F1-ATPase_beta F1 ATP 96.8 0.011 2.3E-07 56.3 10.3 92 169-261 68-175 (274)
234 PRK04301 radA DNA repair and r 96.8 0.0076 1.6E-07 59.5 9.9 58 169-227 101-162 (317)
235 PTZ00035 Rad51 protein; Provis 96.8 0.008 1.7E-07 59.6 9.9 89 170-259 118-223 (337)
236 cd03115 SRP The signal recogni 96.8 0.0065 1.4E-07 54.2 8.5 54 172-227 2-56 (173)
237 PRK12724 flagellar biosynthesi 96.8 0.0063 1.4E-07 61.2 9.1 85 170-258 223-308 (432)
238 cd01125 repA Hexameric Replica 96.8 0.0079 1.7E-07 56.8 9.4 114 172-285 3-159 (239)
239 cd01131 PilT Pilus retraction 96.8 0.003 6.4E-08 57.8 6.2 107 171-287 2-111 (198)
240 TIGR02239 recomb_RAD51 DNA rep 96.8 0.0066 1.4E-07 59.6 9.0 59 169-228 95-157 (316)
241 KOG0729 26S proteasome regulat 96.8 0.019 4E-07 53.3 11.1 91 149-259 177-280 (435)
242 KOG0744 AAA+-type ATPase [Post 96.8 0.005 1.1E-07 58.6 7.6 28 170-197 177-204 (423)
243 PRK06547 hypothetical protein; 96.8 0.0023 5E-08 56.9 5.2 36 160-195 5-40 (172)
244 PRK14974 cell division protein 96.8 0.015 3.2E-07 57.4 11.4 90 169-260 139-233 (336)
245 PF07728 AAA_5: AAA domain (dy 96.8 0.0036 7.9E-08 53.5 6.4 43 173-220 2-44 (139)
246 PLN03186 DNA repair protein RA 96.8 0.0063 1.4E-07 60.2 8.8 58 170-228 123-184 (342)
247 TIGR02858 spore_III_AA stage I 96.8 0.013 2.9E-07 56.0 10.7 124 159-287 99-231 (270)
248 PRK09270 nucleoside triphospha 96.7 0.013 2.9E-07 54.8 10.6 29 168-196 31-59 (229)
249 KOG0727 26S proteasome regulat 96.7 0.055 1.2E-06 49.8 13.9 73 168-260 187-259 (408)
250 TIGR03881 KaiC_arch_4 KaiC dom 96.7 0.013 2.7E-07 55.0 10.5 39 170-210 20-58 (229)
251 PF14532 Sigma54_activ_2: Sigm 96.7 0.0016 3.4E-08 55.8 3.9 44 152-195 1-46 (138)
252 COG4608 AppF ABC-type oligopep 96.7 0.0061 1.3E-07 57.2 8.0 117 169-289 38-174 (268)
253 TIGR01359 UMP_CMP_kin_fam UMP- 96.7 0.0043 9.4E-08 55.9 7.0 24 172-195 1-24 (183)
254 COG1102 Cmk Cytidylate kinase 96.7 0.0022 4.7E-08 54.9 4.5 45 172-229 2-46 (179)
255 COG1875 NYN ribonuclease and A 96.7 0.0085 1.8E-07 58.1 8.9 41 151-191 226-266 (436)
256 PRK07132 DNA polymerase III su 96.7 0.083 1.8E-06 51.4 16.0 162 159-345 6-184 (299)
257 PRK12723 flagellar biosynthesi 96.7 0.0086 1.9E-07 60.2 9.4 89 169-259 173-264 (388)
258 cd02025 PanK Pantothenate kina 96.7 0.0098 2.1E-07 55.3 9.2 24 172-195 1-24 (220)
259 PF12061 DUF3542: Protein of u 96.7 0.0043 9.4E-08 58.5 6.6 100 18-118 299-400 (402)
260 TIGR02655 circ_KaiC circadian 96.7 0.0076 1.6E-07 63.1 9.3 86 169-259 262-363 (484)
261 PRK05973 replicative DNA helic 96.7 0.018 3.9E-07 53.8 10.8 112 170-286 64-194 (237)
262 PRK06067 flagellar accessory p 96.7 0.013 2.9E-07 55.1 10.1 86 169-259 24-130 (234)
263 COG2884 FtsE Predicted ATPase 96.7 0.0088 1.9E-07 52.8 8.0 27 170-196 28-54 (223)
264 TIGR00554 panK_bact pantothena 96.7 0.012 2.7E-07 56.7 9.9 28 168-195 60-87 (290)
265 PRK07667 uridine kinase; Provi 96.7 0.0029 6.3E-08 57.6 5.3 38 159-196 4-43 (193)
266 PRK10867 signal recognition pa 96.6 0.011 2.5E-07 60.2 9.9 28 169-196 99-126 (433)
267 PRK11823 DNA repair protein Ra 96.6 0.0078 1.7E-07 62.1 8.8 85 170-259 80-166 (446)
268 TIGR01817 nifA Nif-specific re 96.6 0.021 4.6E-07 60.7 12.4 62 147-210 194-257 (534)
269 TIGR03878 thermo_KaiC_2 KaiC d 96.6 0.0098 2.1E-07 56.8 8.9 39 170-210 36-74 (259)
270 PRK15455 PrkA family serine pr 96.6 0.0027 5.9E-08 65.8 5.3 48 149-196 76-129 (644)
271 TIGR00959 ffh signal recogniti 96.6 0.016 3.4E-07 59.2 10.6 27 169-195 98-124 (428)
272 PF13238 AAA_18: AAA domain; P 96.6 0.0018 3.9E-08 54.4 3.3 22 173-194 1-22 (129)
273 TIGR00064 ftsY signal recognit 96.6 0.014 3E-07 56.1 9.6 88 169-259 71-164 (272)
274 PF00154 RecA: recA bacterial 96.6 0.012 2.6E-07 57.4 9.1 84 170-260 53-142 (322)
275 PRK15429 formate hydrogenlyase 96.6 0.087 1.9E-06 57.9 16.9 60 149-210 376-437 (686)
276 CHL00206 ycf2 Ycf2; Provisiona 96.6 0.05 1.1E-06 63.8 15.1 28 169-196 1629-1656(2281)
277 PF13481 AAA_25: AAA domain; P 96.6 0.017 3.7E-07 52.4 9.7 50 171-222 33-90 (193)
278 COG0468 RecA RecA/RadA recombi 96.6 0.018 4E-07 54.9 10.1 88 169-259 59-151 (279)
279 PRK05703 flhF flagellar biosyn 96.5 0.0099 2.1E-07 60.9 8.7 87 170-258 221-308 (424)
280 PF13671 AAA_33: AAA domain; P 96.5 0.0023 5E-08 55.0 3.5 24 172-195 1-24 (143)
281 COG0194 Gmk Guanylate kinase [ 96.5 0.014 3E-07 51.5 8.2 25 170-194 4-28 (191)
282 PF06745 KaiC: KaiC; InterPro 96.5 0.005 1.1E-07 57.6 6.0 86 170-259 19-125 (226)
283 PF00485 PRK: Phosphoribulokin 96.5 0.0023 5.1E-08 58.3 3.6 25 172-196 1-25 (194)
284 PRK05439 pantothenate kinase; 96.5 0.032 6.9E-07 54.3 11.4 28 168-195 84-111 (311)
285 KOG0738 AAA+-type ATPase [Post 96.5 0.053 1.1E-06 53.2 12.6 27 169-195 244-270 (491)
286 PRK14721 flhF flagellar biosyn 96.5 0.023 4.9E-07 57.7 10.8 87 170-258 191-278 (420)
287 PRK08233 hypothetical protein; 96.5 0.0026 5.7E-08 57.1 3.7 26 170-195 3-28 (182)
288 TIGR01069 mutS2 MutS2 family p 96.5 0.0027 5.9E-08 69.7 4.4 184 169-366 321-521 (771)
289 COG1703 ArgK Putative periplas 96.5 0.0046 1E-07 58.5 5.3 62 159-220 38-101 (323)
290 PF01583 APS_kinase: Adenylyls 96.5 0.0052 1.1E-07 53.3 5.2 36 170-207 2-37 (156)
291 COG0563 Adk Adenylate kinase a 96.4 0.0051 1.1E-07 55.0 5.4 24 172-195 2-25 (178)
292 cd02019 NK Nucleoside/nucleoti 96.4 0.0027 5.9E-08 47.0 3.0 23 172-194 1-23 (69)
293 COG0465 HflB ATP-dependent Zn 96.4 0.039 8.4E-07 58.0 12.4 172 149-342 150-357 (596)
294 PF03308 ArgK: ArgK protein; 96.4 0.0073 1.6E-07 56.3 6.3 61 158-218 15-77 (266)
295 TIGR00416 sms DNA repair prote 96.4 0.012 2.6E-07 60.8 8.6 85 170-259 94-180 (454)
296 PRK13765 ATP-dependent proteas 96.4 0.0066 1.4E-07 64.9 6.8 79 145-227 27-105 (637)
297 PRK09519 recA DNA recombinatio 96.4 0.014 3.1E-07 63.4 9.3 83 170-259 60-148 (790)
298 KOG0651 26S proteasome regulat 96.4 0.015 3.3E-07 55.1 8.2 29 169-197 165-193 (388)
299 PRK06995 flhF flagellar biosyn 96.4 0.021 4.6E-07 58.9 10.0 60 170-229 256-316 (484)
300 PF13245 AAA_19: Part of AAA d 96.4 0.0099 2.1E-07 44.9 5.7 26 169-194 9-35 (76)
301 PRK14723 flhF flagellar biosyn 96.4 0.032 7E-07 60.5 11.7 59 170-228 185-244 (767)
302 PRK05480 uridine/cytidine kina 96.4 0.0037 8.1E-08 57.7 4.1 27 168-194 4-30 (209)
303 PRK06762 hypothetical protein; 96.4 0.0035 7.5E-08 55.5 3.8 25 170-194 2-26 (166)
304 PTZ00301 uridine kinase; Provi 96.4 0.0036 7.7E-08 57.6 3.9 26 170-195 3-28 (210)
305 COG0467 RAD55 RecA-superfamily 96.3 0.012 2.5E-07 56.4 7.6 49 169-221 22-70 (260)
306 KOG0652 26S proteasome regulat 96.3 0.2 4.4E-06 46.4 14.7 50 146-195 168-230 (424)
307 PF12775 AAA_7: P-loop contain 96.3 0.0034 7.3E-08 60.3 3.5 86 160-260 24-111 (272)
308 PRK10463 hydrogenase nickel in 96.3 0.028 6E-07 54.0 9.6 94 161-260 95-195 (290)
309 PF00006 ATP-synt_ab: ATP synt 96.3 0.016 3.6E-07 53.3 7.8 85 171-259 16-115 (215)
310 PF03215 Rad17: Rad17 cell cyc 96.3 0.0066 1.4E-07 63.5 5.7 59 145-207 15-78 (519)
311 cd01122 GP4d_helicase GP4d_hel 96.2 0.036 7.7E-07 53.4 10.5 52 170-224 30-81 (271)
312 TIGR00235 udk uridine kinase. 96.2 0.0047 1E-07 56.9 4.1 28 168-195 4-31 (207)
313 PF13086 AAA_11: AAA domain; P 96.2 0.0089 1.9E-07 55.8 6.0 63 158-222 7-74 (236)
314 PF06309 Torsin: Torsin; Inte 96.2 0.055 1.2E-06 44.8 9.8 44 151-194 27-77 (127)
315 COG1121 ZnuC ABC-type Mn/Zn tr 96.2 0.023 5E-07 53.2 8.5 24 171-194 31-54 (254)
316 TIGR01650 PD_CobS cobaltochela 96.2 0.015 3.3E-07 56.6 7.6 66 146-218 42-107 (327)
317 PF00910 RNA_helicase: RNA hel 96.2 0.0036 7.7E-08 51.0 2.8 24 173-196 1-24 (107)
318 PRK03839 putative kinase; Prov 96.2 0.0042 9.1E-08 55.8 3.6 24 172-195 2-25 (180)
319 PF05659 RPW8: Arabidopsis bro 96.2 0.066 1.4E-06 46.0 10.6 110 2-121 3-113 (147)
320 cd01135 V_A-ATPase_B V/A-type 96.2 0.021 4.5E-07 54.2 8.3 99 169-267 68-185 (276)
321 TIGR01360 aden_kin_iso1 adenyl 96.2 0.0046 1E-07 55.9 3.7 26 169-194 2-27 (188)
322 PRK01184 hypothetical protein; 96.2 0.037 8E-07 49.8 9.5 21 171-192 2-22 (184)
323 cd03216 ABC_Carb_Monos_I This 96.2 0.0087 1.9E-07 52.8 5.2 110 170-287 26-144 (163)
324 TIGR03880 KaiC_arch_3 KaiC dom 96.1 0.02 4.4E-07 53.4 8.0 47 170-220 16-62 (224)
325 COG0003 ArsA Predicted ATPase 96.1 0.012 2.5E-07 57.6 6.3 49 170-220 2-50 (322)
326 KOG1532 GTPase XAB1, interacts 96.1 0.0065 1.4E-07 56.5 4.2 63 169-231 18-89 (366)
327 cd03238 ABC_UvrA The excision 96.1 0.02 4.2E-07 51.2 7.1 24 169-192 20-43 (176)
328 KOG0726 26S proteasome regulat 96.1 0.061 1.3E-06 50.7 10.3 91 148-259 184-288 (440)
329 PRK04040 adenylate kinase; Pro 96.1 0.0058 1.2E-07 55.3 3.6 26 170-195 2-27 (188)
330 KOG1051 Chaperone HSP104 and r 96.1 0.063 1.4E-06 59.0 12.1 102 150-261 563-672 (898)
331 KOG0736 Peroxisome assembly fa 96.1 0.13 2.7E-06 55.0 13.7 166 152-339 404-597 (953)
332 COG3640 CooC CO dehydrogenase 96.1 0.014 2.9E-07 53.4 5.9 51 172-230 2-52 (255)
333 COG3854 SpoIIIAA ncharacterize 96.1 0.026 5.7E-07 51.3 7.7 116 161-286 128-254 (308)
334 PRK00409 recombination and DNA 96.1 0.024 5.2E-07 62.6 9.1 179 169-366 326-526 (782)
335 PF02562 PhoH: PhoH-like prote 96.1 0.0092 2E-07 54.3 4.9 52 155-208 6-57 (205)
336 cd00561 CobA_CobO_BtuR ATP:cor 96.0 0.062 1.3E-06 46.8 9.8 114 171-286 3-139 (159)
337 COG0572 Udk Uridine kinase [Nu 96.0 0.0065 1.4E-07 55.3 3.9 28 169-196 7-34 (218)
338 KOG3347 Predicted nucleotide k 96.0 0.0057 1.2E-07 51.6 3.2 36 170-212 7-42 (176)
339 TIGR00750 lao LAO/AO transport 96.0 0.027 5.8E-07 55.1 8.5 31 167-197 31-61 (300)
340 PRK00131 aroK shikimate kinase 96.0 0.0062 1.4E-07 54.2 3.8 26 170-195 4-29 (175)
341 PF03205 MobB: Molybdopterin g 96.0 0.013 2.8E-07 50.2 5.4 39 171-210 1-39 (140)
342 PF07726 AAA_3: ATPase family 96.0 0.0043 9.4E-08 51.4 2.4 24 173-196 2-25 (131)
343 PRK09302 circadian clock prote 96.0 0.02 4.3E-07 60.6 8.0 88 169-260 30-141 (509)
344 PF00625 Guanylate_kin: Guanyl 96.0 0.0096 2.1E-07 53.7 4.8 37 170-208 2-38 (183)
345 PRK00625 shikimate kinase; Pro 96.0 0.0059 1.3E-07 54.4 3.3 24 172-195 2-25 (173)
346 COG1428 Deoxynucleoside kinase 96.0 0.0058 1.3E-07 55.0 3.2 26 170-195 4-29 (216)
347 cd03223 ABCD_peroxisomal_ALDP 96.0 0.031 6.8E-07 49.4 7.9 26 170-195 27-52 (166)
348 PF02374 ArsA_ATPase: Anion-tr 96.0 0.011 2.4E-07 57.8 5.4 47 171-219 2-48 (305)
349 cd03214 ABC_Iron-Siderophores_ 96.0 0.047 1E-06 49.0 9.1 115 169-287 24-160 (180)
350 TIGR00708 cobA cob(I)alamin ad 96.0 0.042 9.1E-07 48.5 8.4 115 170-286 5-141 (173)
351 PRK13768 GTPase; Provisional 96.0 0.039 8.4E-07 52.5 8.9 36 171-208 3-38 (253)
352 TIGR00390 hslU ATP-dependent p 95.9 0.022 4.8E-07 57.2 7.4 47 150-196 13-73 (441)
353 PLN02165 adenylate isopentenyl 95.9 0.009 2E-07 58.3 4.5 30 166-195 39-68 (334)
354 PF06524 NOA36: NOA36 protein; 95.9 0.011 2.4E-07 53.8 4.7 10 273-282 137-146 (314)
355 cd00984 DnaB_C DnaB helicase C 95.9 0.061 1.3E-06 50.8 10.2 51 170-223 13-63 (242)
356 cd03247 ABCC_cytochrome_bd The 95.9 0.028 6.1E-07 50.3 7.5 26 170-195 28-53 (178)
357 COG0714 MoxR-like ATPases [Gen 95.9 0.019 4.1E-07 57.0 7.0 64 151-221 26-89 (329)
358 KOG0737 AAA+-type ATPase [Post 95.9 0.052 1.1E-06 53.0 9.4 27 169-195 126-152 (386)
359 TIGR03305 alt_F1F0_F1_bet alte 95.9 0.047 1E-06 55.7 9.7 92 169-261 137-244 (449)
360 KOG0740 AAA+-type ATPase [Post 95.9 0.18 3.8E-06 50.9 13.5 73 168-260 184-256 (428)
361 PRK09435 membrane ATPase/prote 95.9 0.034 7.3E-07 54.8 8.4 38 160-197 44-83 (332)
362 PRK12597 F0F1 ATP synthase sub 95.9 0.048 1E-06 56.0 9.7 91 169-260 142-248 (461)
363 PF00158 Sigma54_activat: Sigm 95.9 0.039 8.4E-07 48.9 8.0 68 152-222 2-71 (168)
364 TIGR02322 phosphon_PhnN phosph 95.9 0.0074 1.6E-07 54.1 3.5 25 171-195 2-26 (179)
365 TIGR01420 pilT_fam pilus retra 95.9 0.028 6E-07 56.1 7.9 108 169-287 121-232 (343)
366 TIGR00764 lon_rel lon-related 95.9 0.021 4.5E-07 61.3 7.4 76 148-227 17-92 (608)
367 PRK08927 fliI flagellum-specif 95.9 0.064 1.4E-06 54.7 10.4 88 169-260 157-259 (442)
368 cd00227 CPT Chloramphenicol (C 95.9 0.0081 1.8E-07 53.7 3.7 25 171-195 3-27 (175)
369 PRK13407 bchI magnesium chelat 95.9 0.011 2.4E-07 58.3 4.9 49 146-194 5-53 (334)
370 PRK08149 ATP synthase SpaL; Va 95.9 0.028 6E-07 57.1 7.8 88 169-260 150-252 (428)
371 PRK05342 clpX ATP-dependent pr 95.9 0.017 3.6E-07 58.8 6.3 46 150-195 72-133 (412)
372 cd03222 ABC_RNaseL_inhibitor T 95.9 0.033 7.1E-07 49.8 7.5 27 169-195 24-50 (177)
373 PRK08972 fliI flagellum-specif 95.8 0.032 6.9E-07 56.6 8.1 88 169-260 161-263 (444)
374 PRK14531 adenylate kinase; Pro 95.8 0.027 5.9E-07 50.7 7.0 25 171-195 3-27 (183)
375 COG1224 TIP49 DNA helicase TIP 95.8 0.043 9.4E-07 53.2 8.4 56 146-201 36-96 (450)
376 PRK06217 hypothetical protein; 95.8 0.0075 1.6E-07 54.4 3.3 34 172-206 3-38 (183)
377 cd03246 ABCC_Protease_Secretio 95.8 0.035 7.6E-07 49.5 7.6 26 170-195 28-53 (173)
378 cd03221 ABCF_EF-3 ABCF_EF-3 E 95.8 0.026 5.7E-07 48.6 6.5 26 170-195 26-51 (144)
379 cd01134 V_A-ATPase_A V/A-type 95.8 0.066 1.4E-06 52.5 9.8 86 170-259 157-264 (369)
380 TIGR02030 BchI-ChlI magnesium 95.8 0.015 3.3E-07 57.5 5.6 47 148-194 3-49 (337)
381 PRK10751 molybdopterin-guanine 95.8 0.011 2.4E-07 52.2 4.1 28 169-196 5-32 (173)
382 PRK00889 adenylylsulfate kinas 95.8 0.011 2.4E-07 52.9 4.2 28 169-196 3-30 (175)
383 cd02021 GntK Gluconate kinase 95.8 0.0073 1.6E-07 52.4 2.9 23 172-194 1-23 (150)
384 PTZ00088 adenylate kinase 1; P 95.8 0.038 8.3E-07 51.5 7.8 24 172-195 8-31 (229)
385 PF03266 NTPase_1: NTPase; In 95.7 0.014 3E-07 51.7 4.6 24 173-196 2-25 (168)
386 cd02028 UMPK_like Uridine mono 95.7 0.012 2.6E-07 52.8 4.2 24 172-195 1-24 (179)
387 cd02024 NRK1 Nicotinamide ribo 95.7 0.0078 1.7E-07 54.2 2.9 23 172-194 1-23 (187)
388 PF08298 AAA_PrkA: PrkA AAA do 95.7 0.09 1.9E-06 51.6 10.4 92 149-245 61-165 (358)
389 cd02023 UMPK Uridine monophosp 95.7 0.0079 1.7E-07 55.0 3.1 23 172-194 1-23 (198)
390 cd02020 CMPK Cytidine monophos 95.7 0.0083 1.8E-07 51.7 3.0 24 172-195 1-24 (147)
391 CHL00081 chlI Mg-protoporyphyr 95.7 0.014 3E-07 57.7 4.9 49 147-195 15-63 (350)
392 TIGR03575 selen_PSTK_euk L-ser 95.7 0.036 7.9E-07 54.6 7.8 23 173-195 2-24 (340)
393 TIGR00150 HI0065_YjeE ATPase, 95.7 0.021 4.6E-07 48.1 5.3 27 170-196 22-48 (133)
394 PF06068 TIP49: TIP49 C-termin 95.7 0.017 3.6E-07 56.7 5.3 53 148-200 23-80 (398)
395 PRK05917 DNA polymerase III su 95.7 0.23 4.9E-06 47.9 12.9 36 159-194 7-43 (290)
396 PRK11388 DNA-binding transcrip 95.7 0.15 3.3E-06 55.6 13.3 48 148-195 324-373 (638)
397 PF11868 DUF3388: Protein of u 95.7 0.027 5.8E-07 47.9 5.6 47 156-211 36-88 (192)
398 PRK06002 fliI flagellum-specif 95.7 0.036 7.8E-07 56.5 7.7 88 170-260 165-265 (450)
399 PRK00279 adk adenylate kinase; 95.6 0.052 1.1E-06 50.3 8.3 24 172-195 2-25 (215)
400 TIGR01041 ATP_syn_B_arch ATP s 95.6 0.045 9.7E-07 56.2 8.4 91 170-260 141-249 (458)
401 PRK14527 adenylate kinase; Pro 95.6 0.012 2.7E-07 53.4 3.9 27 169-195 5-31 (191)
402 PF03193 DUF258: Protein of un 95.6 0.019 4.1E-07 50.0 4.8 34 158-194 26-59 (161)
403 PRK13947 shikimate kinase; Pro 95.6 0.01 2.2E-07 52.7 3.3 24 172-195 3-26 (171)
404 PRK14529 adenylate kinase; Pro 95.6 0.048 1E-06 50.5 7.7 83 173-260 3-87 (223)
405 TIGR00073 hypB hydrogenase acc 95.6 0.014 3E-07 53.8 4.2 32 164-195 16-47 (207)
406 PHA02774 E1; Provisional 95.6 0.037 8.1E-07 57.7 7.6 49 157-209 420-469 (613)
407 COG3598 RepA RecA-family ATPas 95.6 0.054 1.2E-06 51.8 8.0 67 161-229 82-157 (402)
408 PRK10416 signal recognition pa 95.6 0.11 2.5E-06 50.9 10.7 28 169-196 113-140 (318)
409 PRK14530 adenylate kinase; Pro 95.6 0.011 2.5E-07 54.7 3.5 25 171-195 4-28 (215)
410 COG4240 Predicted kinase [Gene 95.5 0.097 2.1E-06 47.6 9.1 82 167-249 47-133 (300)
411 PF08477 Miro: Miro-like prote 95.5 0.012 2.6E-07 48.6 3.3 23 173-195 2-24 (119)
412 TIGR00041 DTMP_kinase thymidyl 95.5 0.039 8.4E-07 50.2 6.9 26 171-196 4-29 (195)
413 PF12780 AAA_8: P-loop contain 95.5 0.044 9.6E-07 52.3 7.4 78 157-259 19-99 (268)
414 PRK09302 circadian clock prote 95.5 0.079 1.7E-06 56.0 10.0 85 170-259 273-373 (509)
415 PF05970 PIF1: PIF1-like helic 95.5 0.036 7.8E-07 55.8 7.1 40 157-196 9-48 (364)
416 cd01672 TMPK Thymidine monopho 95.5 0.038 8.2E-07 50.2 6.8 24 172-195 2-25 (200)
417 PRK05800 cobU adenosylcobinami 95.5 0.049 1.1E-06 48.3 7.2 49 171-225 2-50 (170)
418 PRK12678 transcription termina 95.5 0.057 1.2E-06 56.2 8.5 100 161-261 406-515 (672)
419 PRK13949 shikimate kinase; Pro 95.5 0.013 2.8E-07 52.0 3.5 25 171-195 2-26 (169)
420 PRK09280 F0F1 ATP synthase sub 95.5 0.051 1.1E-06 55.7 8.1 91 169-260 143-249 (463)
421 TIGR03263 guanyl_kin guanylate 95.5 0.011 2.3E-07 53.1 3.0 24 171-194 2-25 (180)
422 PRK15453 phosphoribulokinase; 95.5 0.093 2E-06 50.0 9.3 28 168-195 3-30 (290)
423 cd02029 PRK_like Phosphoribulo 95.5 0.068 1.5E-06 50.5 8.3 25 172-196 1-25 (277)
424 TIGR01040 V-ATPase_V1_B V-type 95.5 0.046 9.9E-07 55.6 7.7 92 169-260 140-258 (466)
425 COG0529 CysC Adenylylsulfate k 95.5 0.028 6.2E-07 49.0 5.3 33 165-197 18-50 (197)
426 PRK03846 adenylylsulfate kinas 95.5 0.023 4.9E-07 52.0 5.1 28 168-195 22-49 (198)
427 PRK07594 type III secretion sy 95.4 0.042 9E-07 55.9 7.3 89 169-261 154-257 (433)
428 PRK06731 flhF flagellar biosyn 95.4 0.1 2.2E-06 49.8 9.6 89 169-259 74-164 (270)
429 PRK06936 type III secretion sy 95.4 0.088 1.9E-06 53.6 9.6 89 169-261 161-264 (439)
430 PRK12339 2-phosphoglycerate ki 95.4 0.015 3.3E-07 52.9 3.8 26 170-195 3-28 (197)
431 TIGR01313 therm_gnt_kin carboh 95.4 0.011 2.3E-07 52.2 2.7 22 173-194 1-22 (163)
432 cd00464 SK Shikimate kinase (S 95.4 0.014 2.9E-07 50.9 3.3 23 173-195 2-24 (154)
433 TIGR01039 atpD ATP synthase, F 95.4 0.12 2.7E-06 52.7 10.5 92 169-261 142-249 (461)
434 COG0488 Uup ATPase components 95.4 0.19 4E-06 52.9 12.1 118 170-288 348-499 (530)
435 TIGR02655 circ_KaiC circadian 95.4 0.073 1.6E-06 55.8 9.2 86 169-258 20-129 (484)
436 PRK00300 gmk guanylate kinase; 95.4 0.015 3.3E-07 53.4 3.7 27 169-195 4-30 (205)
437 cd02027 APSK Adenosine 5'-phos 95.4 0.013 2.9E-07 50.8 3.1 24 172-195 1-24 (149)
438 PRK09099 type III secretion sy 95.4 0.047 1E-06 55.7 7.4 90 169-261 162-265 (441)
439 PTZ00185 ATPase alpha subunit; 95.4 0.099 2.1E-06 53.8 9.6 92 169-260 188-300 (574)
440 PRK06851 hypothetical protein; 95.3 0.17 3.7E-06 50.5 11.1 43 167-210 211-253 (367)
441 PRK14737 gmk guanylate kinase; 95.3 0.016 3.4E-07 52.4 3.5 26 169-194 3-28 (186)
442 PRK13975 thymidylate kinase; P 95.3 0.016 3.6E-07 52.7 3.7 25 171-195 3-27 (196)
443 cd00267 ABC_ATPase ABC (ATP-bi 95.3 0.037 8E-07 48.4 5.8 109 171-288 26-143 (157)
444 cd00071 GMPK Guanosine monopho 95.3 0.013 2.9E-07 50.0 2.8 24 172-195 1-24 (137)
445 PRK05201 hslU ATP-dependent pr 95.3 0.045 9.7E-07 55.1 6.8 46 150-195 16-75 (443)
446 COG1936 Predicted nucleotide k 95.3 0.015 3.2E-07 50.6 3.0 20 172-191 2-21 (180)
447 COG1763 MobB Molybdopterin-gua 95.3 0.018 3.8E-07 50.2 3.4 28 170-197 2-29 (161)
448 COG1124 DppF ABC-type dipeptid 95.2 0.021 4.5E-07 52.6 4.0 27 169-195 32-58 (252)
449 PRK04196 V-type ATP synthase s 95.2 0.063 1.4E-06 55.3 8.0 90 170-260 143-251 (460)
450 cd01129 PulE-GspE PulE/GspE Th 95.2 0.058 1.3E-06 51.6 7.3 116 158-286 69-185 (264)
451 PRK00698 tmk thymidylate kinas 95.2 0.055 1.2E-06 49.6 6.9 26 171-196 4-29 (205)
452 TIGR01287 nifH nitrogenase iro 95.2 0.025 5.4E-07 54.6 4.8 37 171-209 1-37 (275)
453 TIGR00176 mobB molybdopterin-g 95.2 0.018 3.9E-07 50.3 3.4 25 172-196 1-25 (155)
454 PRK05057 aroK shikimate kinase 95.2 0.019 4.1E-07 51.2 3.6 26 170-195 4-29 (172)
455 cd00820 PEPCK_HprK Phosphoenol 95.2 0.018 3.9E-07 46.4 3.1 22 170-191 15-36 (107)
456 PF03029 ATP_bind_1: Conserved 95.2 0.023 5E-07 53.4 4.3 33 175-209 1-33 (238)
457 PRK10078 ribose 1,5-bisphospho 95.2 0.016 3.4E-07 52.4 3.1 24 171-194 3-26 (186)
458 cd03243 ABC_MutS_homologs The 95.2 0.0098 2.1E-07 54.6 1.7 22 171-192 30-51 (202)
459 PF13521 AAA_28: AAA domain; P 95.2 0.016 3.5E-07 51.0 3.1 21 173-193 2-22 (163)
460 PLN02200 adenylate kinase fami 95.2 0.02 4.4E-07 53.7 3.9 27 169-195 42-68 (234)
461 PRK05688 fliI flagellum-specif 95.2 0.066 1.4E-06 54.7 7.7 89 169-261 167-270 (451)
462 cd03116 MobB Molybdenum is an 95.1 0.031 6.7E-07 48.9 4.6 27 171-197 2-28 (159)
463 PRK13946 shikimate kinase; Pro 95.1 0.02 4.3E-07 51.7 3.6 26 170-195 10-35 (184)
464 PLN02348 phosphoribulokinase 95.1 0.046 1E-06 54.5 6.3 29 167-195 46-74 (395)
465 TIGR03600 phage_DnaB phage rep 95.1 2.6 5.6E-05 43.4 19.4 53 170-225 194-246 (421)
466 cd01878 HflX HflX subfamily. 95.1 0.071 1.5E-06 48.8 7.2 27 168-194 39-65 (204)
467 CHL00060 atpB ATP synthase CF1 95.1 0.097 2.1E-06 53.9 8.6 91 169-260 160-273 (494)
468 PRK14738 gmk guanylate kinase; 95.1 0.022 4.7E-07 52.4 3.7 26 168-193 11-36 (206)
469 TIGR03496 FliI_clade1 flagella 95.1 0.1 2.2E-06 53.1 8.7 88 169-260 136-238 (411)
470 cd01136 ATPase_flagellum-secre 95.1 0.17 3.8E-06 49.6 10.1 89 169-261 68-171 (326)
471 COG4555 NatA ABC-type Na+ tran 95.0 0.12 2.7E-06 46.2 8.0 29 168-196 26-54 (245)
472 cd02040 NifH NifH gene encodes 95.0 0.042 9.1E-07 52.8 5.8 40 171-212 2-41 (270)
473 COG4088 Predicted nucleotide k 95.0 0.02 4.4E-07 51.1 3.1 27 171-197 2-28 (261)
474 PF13604 AAA_30: AAA domain; P 95.0 0.052 1.1E-06 49.5 6.0 107 168-287 16-133 (196)
475 PF02456 Adeno_IVa2: Adenoviru 95.0 0.46 9.9E-06 45.4 12.2 41 169-209 86-126 (369)
476 PF02367 UPF0079: Uncharacteri 95.0 0.048 1.1E-06 45.2 5.2 35 161-197 8-42 (123)
477 PRK04182 cytidylate kinase; Pr 95.0 0.022 4.7E-07 51.0 3.5 24 172-195 2-25 (180)
478 PRK05922 type III secretion sy 95.0 0.17 3.6E-06 51.6 10.1 89 169-261 156-259 (434)
479 PRK14532 adenylate kinase; Pro 95.0 0.02 4.3E-07 51.8 3.2 23 173-195 3-25 (188)
480 cd02117 NifH_like This family 95.0 0.024 5.3E-07 52.4 3.8 26 171-196 1-26 (212)
481 cd01132 F1_ATPase_alpha F1 ATP 95.0 0.13 2.7E-06 49.0 8.6 95 170-268 69-181 (274)
482 PRK13948 shikimate kinase; Pro 95.0 0.025 5.5E-07 50.7 3.8 27 169-195 9-35 (182)
483 TIGR03498 FliI_clade3 flagella 95.0 0.11 2.4E-06 52.8 8.8 89 169-260 139-241 (418)
484 COG0237 CoaE Dephospho-CoA kin 95.0 0.087 1.9E-06 48.0 7.3 23 170-192 2-24 (201)
485 PRK07196 fliI flagellum-specif 95.0 0.08 1.7E-06 53.9 7.7 88 169-260 154-256 (434)
486 PRK13230 nitrogenase reductase 95.0 0.035 7.5E-07 53.7 5.0 36 171-208 2-37 (279)
487 COG2019 AdkA Archaeal adenylat 95.0 0.026 5.7E-07 48.7 3.5 25 170-194 4-28 (189)
488 TIGR03574 selen_PSTK L-seryl-t 95.0 0.019 4.1E-07 54.6 3.0 25 172-196 1-25 (249)
489 PRK06761 hypothetical protein; 95.0 0.047 1E-06 52.4 5.7 26 171-196 4-29 (282)
490 cd01983 Fer4_NifH The Fer4_Nif 94.9 0.026 5.6E-07 44.4 3.4 25 172-196 1-25 (99)
491 cd01428 ADK Adenylate kinase ( 94.9 0.022 4.7E-07 51.8 3.3 23 173-195 2-24 (194)
492 TIGR02173 cyt_kin_arch cytidyl 94.9 0.025 5.3E-07 50.2 3.5 23 172-194 2-24 (171)
493 COG1116 TauB ABC-type nitrate/ 94.9 0.022 4.8E-07 52.7 3.2 20 172-191 31-50 (248)
494 cd03282 ABC_MSH4_euk MutS4 hom 94.9 0.04 8.6E-07 50.5 4.8 113 171-288 30-154 (204)
495 PRK14493 putative bifunctional 94.9 0.034 7.4E-07 53.3 4.5 34 170-204 1-34 (274)
496 PRK09825 idnK D-gluconate kina 94.8 0.026 5.7E-07 50.4 3.5 25 171-195 4-28 (176)
497 KOG0943 Predicted ubiquitin-pr 94.8 0.016 3.4E-07 63.4 2.3 78 435-512 1711-1788(3015)
498 PRK03731 aroL shikimate kinase 94.8 0.026 5.6E-07 50.2 3.5 24 171-194 3-26 (171)
499 PRK13695 putative NTPase; Prov 94.8 0.04 8.8E-07 49.1 4.7 34 173-207 3-36 (174)
500 PRK13236 nitrogenase reductase 94.8 0.048 1E-06 53.3 5.5 52 165-218 1-52 (296)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=1e-53 Score=461.83 Aligned_cols=414 Identities=28% Similarity=0.423 Sum_probs=330.7
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHhccccccc----------------c
Q 010355 32 SNLEKLKNEVQKLRGAKESVQQKIDDAKRSGEDIEQRVENWLITADEILDAAARIIEGTEDTT----------------N 95 (512)
Q Consensus 32 ~~~~~l~~~~~~L~~~l~~i~~~l~~a~~~~~~~~~~~~~wl~~vr~~~~d~ed~ld~~~~~~----------------~ 95 (512)
..+.+..+.+..|+..|..++.++.+++.+++ ....+..|...+++++|++++.++.+.... .
T Consensus 21 ~~~~~~~~~i~~Lk~~L~~l~~~l~d~~a~~~-~~~~~~~~~e~~~~~~~~~e~~~~~~~v~~~~~~~~~~l~~~~~~~~ 99 (889)
T KOG4658|consen 21 ECLDGKDNYILELKENLKALQSALEDLDAKRD-DLERRVNWEEDVGDLVYLAEDIIWLFLVEEIERKANDLLSTRSVERQ 99 (889)
T ss_pred HHHhchHHHHHHHHHHHHHHHHHHHHHHhhcc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhHHHHH
Confidence 34556777899999999999999999999864 478899999999999999999998654322 0
Q ss_pred cCCCChhHhhhHHHHHHHHHHHHHHHHHHcCCCc------ccccccCCCc-cccccccCccccccchHHHHHHHHHhcCC
Q 010355 96 RLCPNLNTRYQVSKKAAREVKAAAELLQQEGRFD------KVSYRTVPED-VWLTSIKGYEAFESRMSTLNDVINALKNP 168 (512)
Q Consensus 96 ~~~~~~~~~~~~~~~i~~~~~~l~~i~~~~~~~~------~~~~~~~~~~-~~~~~~~~~~~~~gR~~~l~~l~~~L~~~ 168 (512)
+.| -...++..+..+..+.+++..+.+....+. .+.....+.. ....+...... ||.+..++++.+.|...
T Consensus 100 ~~c-~~~~~~~~~~~~~~~~~rv~~~l~~ve~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~~-VG~e~~~~kl~~~L~~d 177 (889)
T KOG4658|consen 100 RLC-LCGFCSKNVSDSYKYGKRVSKVLREVESLGSKGVFEVVGESLDPREKVETRPIQSESD-VGLETMLEKLWNRLMED 177 (889)
T ss_pred HHh-hhhhHhHhhhhhHhHHHHHHHHHHHHHHhccccceecccccccchhhcccCCCCcccc-ccHHHHHHHHHHHhccC
Confidence 111 114455555666666666655555444443 2221111111 11111222223 99999999999999987
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhh-hcCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCC---CchHHHHHHHHH
Q 010355 169 DVHMIGAYGMAGVGKTMLVKEVARQAK-ADKLFDEVVYAEVSQRPDVKKIQGQIADKLGLKFYEE---SESGRARKLCER 244 (512)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~v~~~~~-~~~~f~~~~wv~~~~~~~~~~ll~~i~~~l~~~~~~~---~~~~~~~~l~~~ 244 (512)
+..+++|+||||+||||||++++++.. ++++|+.++||.||+.++...++.+|+..++...... ........+.+.
T Consensus 178 ~~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~~~iq~~Il~~l~~~~~~~~~~~~~~~~~~i~~~ 257 (889)
T KOG4658|consen 178 DVGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTTRKIQQTILERLGLLDEEWEDKEEDELASKLLNL 257 (889)
T ss_pred CCCEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEcccccHHhHHHHHHHHhccCCcccchhhHHHHHHHHHHH
Confidence 779999999999999999999999988 8899999999999999999999999999998743332 224556677777
Q ss_pred HhCCCeEEEEEeCCCChhhhhhhCCCCC--CCCeEEEEEeCCcchhccccCCccceecCCCCHHHHHHHHHHHhCCC--C
Q 010355 245 LKKEKKILVILDDIWTNLDLENVGIPFG--VRGCRVLMTARSQDVLSSKMDCQNNFLIGVLNESEARDLFKKLVGDK--I 320 (512)
Q Consensus 245 l~~~k~~LlVlDdv~~~~~~~~l~~~~~--~~gs~iivTtR~~~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~--~ 320 (512)
|. +|||||||||||+..+|+.++.|++ .+||+|++|||+..|+...++....+++..|++++||.||++.++.. .
T Consensus 258 L~-~krfllvLDDIW~~~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~~~~~v~~L~~~eaW~LF~~~v~~~~~~ 336 (889)
T KOG4658|consen 258 LE-GKRFLLVLDDIWEEVDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGVDYPIEVECLTPEEAWDLFQKKVGPNTLG 336 (889)
T ss_pred hc-cCceEEEEecccccccHHhcCCCCCCccCCeEEEEEeccHhhhhccccCCccccccccCccccHHHHHHhhcccccc
Confidence 76 6999999999999999999988888 57899999999999987668888999999999999999999999743 3
Q ss_pred CCchhHHHHHHHHHHcCCChhHHHHHHHHhccC-CHHHHHHHHHHhcCCCCCCCCcchHHHHhHHHHHHhccchhhhhcc
Q 010355 321 ENNDLKSLAMNIVKACRGLPIAIVTIARALRNK-NTFEWKSALRELTRPSSGSFSGVAAEAYKTSELSYNHLEGALKTAR 399 (512)
Q Consensus 321 ~~~~~~~~~~~I~~~~~GlPLai~~ia~~L~~~-~~~~w~~~l~~l~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~cf 399 (512)
..+.++.+|++++++|+|+|||+.++|+.|+.| +..+|+++.+.+.+....+.++....++.+|.+||++||+++|.||
T Consensus 337 ~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~~~~i~~iLklSyd~L~~~lK~CF 416 (889)
T KOG4658|consen 337 SHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGMEESILPILKLSYDNLPEELKSCF 416 (889)
T ss_pred ccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCchhhhhHHhhhccHhhhhHHHHHHH
Confidence 334588999999999999999999999999988 8889999999998886666677788999999999999999999999
Q ss_pred c--cccc-ccchhh----hHhhccccccccchhHHHHHhhhhhhhhhhhhcCCCcccccchhhhccCCcCCCCCC
Q 010355 400 L--RAVP-NWELDE----EYCWAGDLNTTLQHLNEKMAKRRMTEVEYESEMSTSEEIEEEEEEENAERPMILLDT 467 (512)
Q Consensus 400 l--~~fp-~~~i~~----~~~~~~g~~~~~~~l~e~~~~~~~~~~~~~~~~~~~~e~~e~~~~e~~~~~~~~~~~ 467 (512)
+ +.|| +|.|++ .+|+|+||+... ....+.++++.+|..+++.+++.....
T Consensus 417 LycalFPED~~I~~e~Li~yWiaEGfi~~~------------------~~~~~~~d~G~~~i~~LV~~~Ll~~~~ 473 (889)
T KOG4658|consen 417 LYCALFPEDYEIKKEKLIEYWIAEGFIDPL------------------DGGETAEDVGYDYIEELVRASLLIEER 473 (889)
T ss_pred HhhccCCcccccchHHHHHHHHhccCcCcc------------------ccccchhcchHHHHHHHHHHHHHhhcc
Confidence 9 5568 999998 999999997551 223456677888888888887776543
No 2
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=2.1e-42 Score=337.80 Aligned_cols=267 Identities=31% Similarity=0.487 Sum_probs=209.4
Q ss_pred chHHHHHHHHHhcC--CCceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCC-
Q 010355 154 RMSTLNDVINALKN--PDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIADKLGLKFY- 230 (512)
Q Consensus 154 R~~~l~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~i~~~l~~~~~- 230 (512)
|+.++++|.++|.. .+.++|+|+|+||+||||||.+++++...+.+|+.++|+.++...+...++..|+.+++....
T Consensus 1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~ 80 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSS 80 (287)
T ss_dssp -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-ST
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccccccc
Confidence 78899999999997 789999999999999999999999886677889999999999999999999999999988743
Q ss_pred ---CCCchHHHHHHHHHHhCCCeEEEEEeCCCChhhhhhhCCCCC--CCCeEEEEEeCCcchhccccCCccceecCCCCH
Q 010355 231 ---EESESGRARKLCERLKKEKKILVILDDIWTNLDLENVGIPFG--VRGCRVLMTARSQDVLSSKMDCQNNFLIGVLNE 305 (512)
Q Consensus 231 ---~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~~~~l~~~~~--~~gs~iivTtR~~~v~~~~~~~~~~~~l~~L~~ 305 (512)
..........+.+.|. ++++||||||||+...|..+..++. ..|++||||||+..++.........++|++|+.
T Consensus 81 ~~~~~~~~~~~~~l~~~L~-~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l~~L~~ 159 (287)
T PF00931_consen 81 ISDPKDIEELQDQLRELLK-DKRCLLVLDDVWDEEDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIELEPLSE 159 (287)
T ss_dssp SSCCSSHHHHHHHHHHHHC-CTSEEEEEEEE-SHHHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEECSS--H
T ss_pred cccccccccccccchhhhc-cccceeeeeeeccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 2344456677777776 4799999999999999987755544 568999999999987643333367899999999
Q ss_pred HHHHHHHHHHhCCCC--CCchhHHHHHHHHHHcCCChhHHHHHHHHhccC-CHHHHHHHHHHhcCCCCCCCCcchHHHHh
Q 010355 306 SEARDLFKKLVGDKI--ENNDLKSLAMNIVKACRGLPIAIVTIARALRNK-NTFEWKSALRELTRPSSGSFSGVAAEAYK 382 (512)
Q Consensus 306 ~ea~~Lf~~~~~~~~--~~~~~~~~~~~I~~~~~GlPLai~~ia~~L~~~-~~~~w~~~l~~l~~~~~~~~~~~~~~~~~ 382 (512)
++|++||.+.++... ..+.+.+.+++|+++|+|+||||.++|++|+.+ +..+|..+++++...... ..+....+..
T Consensus 160 ~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~-~~~~~~~~~~ 238 (287)
T PF00931_consen 160 EEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRE-SRDYDRSVFS 238 (287)
T ss_dssp HHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTC-SSGSCHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccc
Confidence 999999999997433 334456789999999999999999999999754 788999999887665432 2224688999
Q ss_pred HHHHHHhccchhhhhccc--cccc-ccchhh----hHhhcccccccc
Q 010355 383 TSELSYNHLEGALKTARL--RAVP-NWELDE----EYCWAGDLNTTL 422 (512)
Q Consensus 383 ~l~~sy~~L~~~~k~cfl--~~fp-~~~i~~----~~~~~~g~~~~~ 422 (512)
++.+||+.||+++|.||+ ++|| ++.|++ .+|+++|++...
T Consensus 239 ~l~~s~~~L~~~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~~ 285 (287)
T PF00931_consen 239 ALELSYDSLPDELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISSK 285 (287)
T ss_dssp HHHHHHHSSHTCCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC--
T ss_pred cceechhcCCccHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCccc
Confidence 999999999999999999 7777 888887 999999998764
No 3
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=5.8e-33 Score=315.73 Aligned_cols=278 Identities=18% Similarity=0.259 Sum_probs=215.5
Q ss_pred cCccccccchHHHHHHHHHhc--CCCceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEe---CCCC--------
Q 010355 146 KGYEAFESRMSTLNDVINALK--NPDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEV---SQRP-------- 212 (512)
Q Consensus 146 ~~~~~~~gR~~~l~~l~~~L~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~---~~~~-------- 212 (512)
.....++||+..+++|..+|. ...+++|+|+||||+||||||+.+|+... ..|++.+|+.. +...
T Consensus 181 ~~~~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~--~~F~g~vfv~~~~v~~~~~~~~~~~~ 258 (1153)
T PLN03210 181 NDFEDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSRLS--RQFQSSVFIDRAFISKSMEIYSSANP 258 (1153)
T ss_pred cccccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHHHHh--hcCCeEEEeeccccccchhhcccccc
Confidence 345679999999999998886 45789999999999999999999999876 56888887742 1110
Q ss_pred ---C-HHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHhCCCeEEEEEeCCCChhhhhhhCCCCC--CCCeEEEEEeCCcc
Q 010355 213 ---D-VKKIQGQIADKLGLKFYEESESGRARKLCERLKKEKKILVILDDIWTNLDLENVGIPFG--VRGCRVLMTARSQD 286 (512)
Q Consensus 213 ---~-~~~ll~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~~~~l~~~~~--~~gs~iivTtR~~~ 286 (512)
. ...+...++..+....... ......+.+++. ++|+||||||||+..+|+.+..... ++||+||||||+..
T Consensus 259 ~~~~~~~~l~~~~l~~il~~~~~~--~~~~~~~~~~L~-~krvLLVLDdv~~~~~l~~L~~~~~~~~~GsrIIiTTrd~~ 335 (1153)
T PLN03210 259 DDYNMKLHLQRAFLSEILDKKDIK--IYHLGAMEERLK-HRKVLIFIDDLDDQDVLDALAGQTQWFGSGSRIIVITKDKH 335 (1153)
T ss_pred cccchhHHHHHHHHHHHhCCCCcc--cCCHHHHHHHHh-CCeEEEEEeCCCCHHHHHHHHhhCccCCCCcEEEEEeCcHH
Confidence 0 1223344444332111100 001234556665 6899999999999999888854333 68999999999998
Q ss_pred hhccccCCccceecCCCCHHHHHHHHHHHhCCCC-CCchhHHHHHHHHHHcCCChhHHHHHHHHhccCCHHHHHHHHHHh
Q 010355 287 VLSSKMDCQNNFLIGVLNESEARDLFKKLVGDKI-ENNDLKSLAMNIVKACRGLPIAIVTIARALRNKNTFEWKSALREL 365 (512)
Q Consensus 287 v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~-~~~~~~~~~~~I~~~~~GlPLai~~ia~~L~~~~~~~w~~~l~~l 365 (512)
++.. .+...+|++..|+.++||+||+++++... ++..+.+++++|+++|+|+||||+++|++|++++..+|..++.+|
T Consensus 336 vl~~-~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k~~~~W~~~l~~L 414 (1153)
T PLN03210 336 FLRA-HGIDHIYEVCLPSNELALEMFCRSAFKKNSPPDGFMELASEVALRAGNLPLGLNVLGSYLRGRDKEDWMDMLPRL 414 (1153)
T ss_pred HHHh-cCCCeEEEecCCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 8642 34557899999999999999999998543 445678899999999999999999999999999999999999998
Q ss_pred cCCCCCCCCcchHHHHhHHHHHHhccch-hhhhccc--ccc-cccchhh-hHhhccccccccchhHHHHHhhhhhh
Q 010355 366 TRPSSGSFSGVAAEAYKTSELSYNHLEG-ALKTARL--RAV-PNWELDE-EYCWAGDLNTTLQHLNEKMAKRRMTE 436 (512)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~l~~sy~~L~~-~~k~cfl--~~f-p~~~i~~-~~~~~~g~~~~~~~l~e~~~~~~~~~ 436 (512)
.... ...+..+|++||+.|++ ..|.||+ |+| +++.++. ..|++.+.......+..++.+.++..
T Consensus 415 ~~~~-------~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~~v~~~l~~~~~~~~~~l~~L~~ksLi~~ 483 (1153)
T PLN03210 415 RNGL-------DGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVNDIKLLLANSDLDVNIGLKNLVDKSLIHV 483 (1153)
T ss_pred HhCc-------cHHHHHHHHHhhhccCccchhhhhheehhhcCCCCHHHHHHHHHhcCCCchhChHHHHhcCCEEE
Confidence 7532 35789999999999987 5899999 666 5888888 88888887777777888888876643
No 4
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.43 E-value=3.5e-11 Score=116.19 Aligned_cols=181 Identities=17% Similarity=0.226 Sum_probs=115.9
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHH---
Q 010355 167 NPDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIADKLGLKFYEESESGRARKLCE--- 243 (512)
Q Consensus 167 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~i~~~l~~~~~~~~~~~~~~~l~~--- 243 (512)
..+.++++|+|++|+|||||++.+++...... + .++|+ +....+..+++..|+..++.+............+..
T Consensus 40 ~~~~~~~~l~G~~G~GKTtl~~~l~~~l~~~~-~-~~~~~-~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~ 116 (269)
T TIGR03015 40 SQREGFILITGEVGAGKTTLIRNLLKRLDQER-V-VAAKL-VNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLI 116 (269)
T ss_pred hcCCCEEEEEcCCCCCHHHHHHHHHHhcCCCC-e-EEeee-eCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHH
Confidence 34457899999999999999999998865321 1 22233 333457788999999999886544333333333333
Q ss_pred -HHhCCCeEEEEEeCCCChh--hhhhhCCCC--C---CCCeEEEEEeCCcchh--c------cccCCccceecCCCCHHH
Q 010355 244 -RLKKEKKILVILDDIWTNL--DLENVGIPF--G---VRGCRVLMTARSQDVL--S------SKMDCQNNFLIGVLNESE 307 (512)
Q Consensus 244 -~l~~~k~~LlVlDdv~~~~--~~~~l~~~~--~---~~gs~iivTtR~~~v~--~------~~~~~~~~~~l~~L~~~e 307 (512)
....+++++||+|+++... .+..+.... . .....|++|....... . ........+.+++|+.++
T Consensus 117 ~~~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~~~~~l~~~~~~~l~~r~~~~~~l~~l~~~e 196 (269)
T TIGR03015 117 EQFAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPEFRETLQSPQLQQLRQRIIASCHLGPLDREE 196 (269)
T ss_pred HHHhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHHHHHHHcCchhHHHHhheeeeeeCCCCCHHH
Confidence 3345788999999998643 333332111 1 2233455665432110 0 001113467899999999
Q ss_pred HHHHHHHHhCCC---CCCchhHHHHHHHHHHcCCChhHHHHHHHHh
Q 010355 308 ARDLFKKLVGDK---IENNDLKSLAMNIVKACRGLPIAIVTIARAL 350 (512)
Q Consensus 308 a~~Lf~~~~~~~---~~~~~~~~~~~~I~~~~~GlPLai~~ia~~L 350 (512)
...++...+... ....-..+..+.|++.|+|.|..|..++..+
T Consensus 197 ~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 197 TREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred HHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 999998776421 1112234688999999999999999999887
No 5
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.42 E-value=3.9e-11 Score=122.57 Aligned_cols=236 Identities=18% Similarity=0.083 Sum_probs=147.8
Q ss_pred ccccccchHHHHHHHHHhc----CCCceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCCCHHHHHHHHHH
Q 010355 148 YEAFESRMSTLNDVINALK----NPDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIAD 223 (512)
Q Consensus 148 ~~~~~gR~~~l~~l~~~L~----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~i~~ 223 (512)
+..|+||+.++++|...+. ....+.+.|+|++|+|||++++.+++........-.++++++....+...++..|+.
T Consensus 29 P~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~~i~~ 108 (394)
T PRK00411 29 PENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFSEIAR 108 (394)
T ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHHHHHH
Confidence 4568999999999988874 344567899999999999999999998765432345677777777788899999999
Q ss_pred HhCC-CCCC--CCchHHHHHHHHHHhC-CCeEEEEEeCCCChh------hhhhhC-CCCCCC--CeEEEEEeCCcchhcc
Q 010355 224 KLGL-KFYE--ESESGRARKLCERLKK-EKKILVILDDIWTNL------DLENVG-IPFGVR--GCRVLMTARSQDVLSS 290 (512)
Q Consensus 224 ~l~~-~~~~--~~~~~~~~~l~~~l~~-~k~~LlVlDdv~~~~------~~~~l~-~~~~~~--gs~iivTtR~~~v~~~ 290 (512)
+++. ..+. .+.......+.+.+.. +++++||||+++... .+..+. .....+ +..+|.++....+...
T Consensus 109 ~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~~~~~~v~vI~i~~~~~~~~~ 188 (394)
T PRK00411 109 QLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEEYPGARIGVIGISSDLTFLYI 188 (394)
T ss_pred HhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhccCCCeEEEEEEECCcchhhh
Confidence 9865 2221 2234455666666653 467899999997643 222221 111112 3336666665432211
Q ss_pred ------ccCCccceecCCCCHHHHHHHHHHHhCCC----CCCchhHHHHHHHHHH----cCCChhHHHHHHHHhc-----
Q 010355 291 ------KMDCQNNFLIGVLNESEARDLFKKLVGDK----IENNDLKSLAMNIVKA----CRGLPIAIVTIARALR----- 351 (512)
Q Consensus 291 ------~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~----~~~~~~~~~~~~I~~~----~~GlPLai~~ia~~L~----- 351 (512)
..-....+.+.|++.++..+++..++... ... .+....|++. .|..+.|+.++-....
T Consensus 189 l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~---~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~~~ 265 (394)
T PRK00411 189 LDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVD---DEVLDLIADLTAREHGDARVAIDLLRRAGLIAERE 265 (394)
T ss_pred cCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCC---HhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHc
Confidence 01112467999999999999998876311 112 2333444444 4557777777654321
Q ss_pred cC---CHHHHHHHHHHhcCCCCCCCCcchHHHHhHHHHHHhccchhhhhccc
Q 010355 352 NK---NTFEWKSALRELTRPSSGSFSGVAAEAYKTSELSYNHLEGALKTARL 400 (512)
Q Consensus 352 ~~---~~~~w~~~l~~l~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~cfl 400 (512)
+. +...+..++..+. ...+.-.+..||.+.|..+.
T Consensus 266 ~~~~I~~~~v~~a~~~~~--------------~~~~~~~~~~L~~~~k~~L~ 303 (394)
T PRK00411 266 GSRKVTEEDVRKAYEKSE--------------IVHLSEVLRTLPLHEKLLLR 303 (394)
T ss_pred CCCCcCHHHHHHHHHHHH--------------HHHHHHHHhcCCHHHHHHHH
Confidence 11 5556666665531 12234457788888775555
No 6
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.40 E-value=1.4e-11 Score=139.54 Aligned_cols=241 Identities=15% Similarity=0.150 Sum_probs=149.7
Q ss_pred ccCccccccchHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCC-CCCHHHHHHHHHH
Q 010355 145 IKGYEAFESRMSTLNDVINALKNPDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQ-RPDVKKIQGQIAD 223 (512)
Q Consensus 145 ~~~~~~~~gR~~~l~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~-~~~~~~ll~~i~~ 223 (512)
|+.+..++-|..-++.|-. ....+++.|+|++|.||||++.+++.. +..++|+++.. ..++..++..++.
T Consensus 10 p~~~~~~~~R~rl~~~l~~---~~~~~~~~v~apaG~GKTtl~~~~~~~------~~~~~w~~l~~~d~~~~~f~~~l~~ 80 (903)
T PRK04841 10 PVRLHNTVVRERLLAKLSG---ANNYRLVLVTSPAGYGKTTLISQWAAG------KNNLGWYSLDESDNQPERFASYLIA 80 (903)
T ss_pred CCCccccCcchHHHHHHhc---ccCCCeEEEECCCCCCHHHHHHHHHHh------CCCeEEEecCcccCCHHHHHHHHHH
Confidence 3445567788776665542 235789999999999999999998853 22689999964 4566777777777
Q ss_pred HhCCCCCC--------------CCchHHHHHHHHHHhC-CCeEEEEEeCCCChh------hhhhhCCCCCCCCeEEEEEe
Q 010355 224 KLGLKFYE--------------ESESGRARKLCERLKK-EKKILVILDDIWTNL------DLENVGIPFGVRGCRVLMTA 282 (512)
Q Consensus 224 ~l~~~~~~--------------~~~~~~~~~l~~~l~~-~k~~LlVlDdv~~~~------~~~~l~~~~~~~gs~iivTt 282 (512)
.++..... .........+...+.. +.+++|||||+.... .+..+ .....++.++||||
T Consensus 81 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l-~~~~~~~~~lv~~s 159 (903)
T PRK04841 81 ALQQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFF-LRHQPENLTLVVLS 159 (903)
T ss_pred HHHHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHH-HHhCCCCeEEEEEe
Confidence 77421111 1111233445555543 679999999996532 12222 11124667888999
Q ss_pred CCcchhcc--ccCCccceecC----CCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChhHHHHHHHHhccCCHH
Q 010355 283 RSQDVLSS--KMDCQNNFLIG----VLNESEARDLFKKLVGDKIENNDLKSLAMNIVKACRGLPIAIVTIARALRNKNTF 356 (512)
Q Consensus 283 R~~~v~~~--~~~~~~~~~l~----~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~GlPLai~~ia~~L~~~~~~ 356 (512)
|....... .........+. +|+.+++..||....+.... ...+..|++.|+|+|+++..++..+......
T Consensus 160 R~~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~~~~----~~~~~~l~~~t~Gwp~~l~l~~~~~~~~~~~ 235 (903)
T PRK04841 160 RNLPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSSPIE----AAESSRLCDDVEGWATALQLIALSARQNNSS 235 (903)
T ss_pred CCCCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhccCCCCC----HHHHHHHHHHhCChHHHHHHHHHHHhhCCCc
Confidence 98532110 00112234455 99999999999887764332 3457789999999999999998877543210
Q ss_pred HHHHHHHHhcCCCCCCCCcchHHHHhHHHH-HHhccchhhhhccc--ccccccc
Q 010355 357 EWKSALRELTRPSSGSFSGVAAEAYKTSEL-SYNHLEGALKTARL--RAVPNWE 407 (512)
Q Consensus 357 ~w~~~l~~l~~~~~~~~~~~~~~~~~~l~~-sy~~L~~~~k~cfl--~~fp~~~ 407 (512)
.......+... . ...+...|.- .|..||+..+..++ ++++.+.
T Consensus 236 -~~~~~~~~~~~---~----~~~~~~~l~~~v~~~l~~~~~~~l~~~a~~~~~~ 281 (903)
T PRK04841 236 -LHDSARRLAGI---N----ASHLSDYLVEEVLDNVDLETRHFLLRCSVLRSMN 281 (903)
T ss_pred -hhhhhHhhcCC---C----chhHHHHHHHHHHhcCCHHHHHHHHHhcccccCC
Confidence 01111111100 0 1234444433 47899999999888 6666554
No 7
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.39 E-value=1.8e-12 Score=122.22 Aligned_cols=192 Identities=22% Similarity=0.311 Sum_probs=104.9
Q ss_pred cccchHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCCCHHHHHHHH---------
Q 010355 151 FESRMSTLNDVINALKNPDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQI--------- 221 (512)
Q Consensus 151 ~~gR~~~l~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~i--------- 221 (512)
|+||+++++.|.+++..+..+.+.|+|+.|+|||+|++.+.+..... .+ .++|+........ ..+..+
T Consensus 1 F~gR~~el~~l~~~l~~~~~~~~~l~G~rg~GKTsLl~~~~~~~~~~-~~-~~~y~~~~~~~~~-~~~~~~~~~~~~~~~ 77 (234)
T PF01637_consen 1 FFGREKELEKLKELLESGPSQHILLYGPRGSGKTSLLKEFINELKEK-GY-KVVYIDFLEESNE-SSLRSFIEETSLADE 77 (234)
T ss_dssp S-S-HHHHHHHHHCHHH--SSEEEEEESTTSSHHHHHHHHHHHCT---EE-CCCHHCCTTBSHH-HHHHHHHHHHHHHCH
T ss_pred CCCHHHHHHHHHHHHHhhcCcEEEEEcCCcCCHHHHHHHHHHHhhhc-CC-cEEEEecccchhh-hHHHHHHHHHHHHHH
Confidence 78999999999999887667899999999999999999999987432 11 3444444333322 222222
Q ss_pred -HHHhCCCCC-----------CCCchHHHHHHHHHHhC-CCeEEEEEeCCCChh-h----------hhhh-CCCCCCCCe
Q 010355 222 -ADKLGLKFY-----------EESESGRARKLCERLKK-EKKILVILDDIWTNL-D----------LENV-GIPFGVRGC 276 (512)
Q Consensus 222 -~~~l~~~~~-----------~~~~~~~~~~l~~~l~~-~k~~LlVlDdv~~~~-~----------~~~l-~~~~~~~gs 276 (512)
...++.... ..........+.+.+.. +++++||+|++.... . +..+ .......+.
T Consensus 78 l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 157 (234)
T PF01637_consen 78 LSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQNV 157 (234)
T ss_dssp CHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----TTE
T ss_pred HHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhccccCCc
Confidence 111211111 11223345566666653 346999999996554 1 1111 111113344
Q ss_pred EEEEEeCCcchhcc-------ccCCccceecCCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChhHHHH
Q 010355 277 RVLMTARSQDVLSS-------KMDCQNNFLIGVLNESEARDLFKKLVGDKIENNDLKSLAMNIVKACRGLPIAIVT 345 (512)
Q Consensus 277 ~iivTtR~~~v~~~-------~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~GlPLai~~ 345 (512)
.+|+++........ ..+....+.|++|+.+++++++...+.....-+.-.....+|+..+||+|..|..
T Consensus 158 ~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gG~P~~l~~ 233 (234)
T PF01637_consen 158 SIVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKELIKLPFSDEDIEEIYSLTGGNPRYLQE 233 (234)
T ss_dssp EEEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC------HHHHHHHHHHHTT-HHHHHH
T ss_pred eEEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHhhcccCCHHHHHHHHHHhCCCHHHHhc
Confidence 45555544332211 2334456999999999999999997643311111245679999999999998865
No 8
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.36 E-value=1.9e-10 Score=116.21 Aligned_cols=238 Identities=16% Similarity=0.160 Sum_probs=145.2
Q ss_pred cccccchHHHHHHHHHhc----CCCceEEEEEcCCCCcHHHHHHHHHHhhhhcC-CC---CeEEEEEeCCCCCHHHHHHH
Q 010355 149 EAFESRMSTLNDVINALK----NPDVHMIGAYGMAGVGKTMLVKEVARQAKADK-LF---DEVVYAEVSQRPDVKKIQGQ 220 (512)
Q Consensus 149 ~~~~gR~~~l~~l~~~L~----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-~f---~~~~wv~~~~~~~~~~ll~~ 220 (512)
..|+||+.+++.|..+|. ....+.+.|+|++|+|||++++.+++...... .. -.++|+++....+...++..
T Consensus 15 ~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~~~~ 94 (365)
T TIGR02928 15 DRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQVLVE 94 (365)
T ss_pred CCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHHHHH
Confidence 468999999999998876 34457899999999999999999998764311 11 24678888777788899999
Q ss_pred HHHHh---CCCCCC--CCchHHHHHHHHHHh-CCCeEEEEEeCCCChh-----hhhhh-CC--CCC--CCCeEEEEEeCC
Q 010355 221 IADKL---GLKFYE--ESESGRARKLCERLK-KEKKILVILDDIWTNL-----DLENV-GI--PFG--VRGCRVLMTARS 284 (512)
Q Consensus 221 i~~~l---~~~~~~--~~~~~~~~~l~~~l~-~~k~~LlVlDdv~~~~-----~~~~l-~~--~~~--~~gs~iivTtR~ 284 (512)
|+.++ +...+. .+.......+.+.+. .+++++||||+++... .+..+ .. ... +....+|++|..
T Consensus 95 i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~lI~i~n~ 174 (365)
T TIGR02928 95 LANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGVIGISND 174 (365)
T ss_pred HHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEEEEEEECC
Confidence 99988 443222 223344556666664 3568999999997652 12222 11 111 234455556654
Q ss_pred cchhc----cccC--CccceecCCCCHHHHHHHHHHHhC---C-CCCCchhHHHHHHHHHHcCCChhHHHHHH-HHh--c
Q 010355 285 QDVLS----SKMD--CQNNFLIGVLNESEARDLFKKLVG---D-KIENNDLKSLAMNIVKACRGLPIAIVTIA-RAL--R 351 (512)
Q Consensus 285 ~~v~~----~~~~--~~~~~~l~~L~~~ea~~Lf~~~~~---~-~~~~~~~~~~~~~I~~~~~GlPLai~~ia-~~L--~ 351 (512)
..... .... ....+.++|++.++..+++..++. . ....+...+.+..++..+.|.|..+..+. ... .
T Consensus 175 ~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l~~a~~~a 254 (365)
T TIGR02928 175 LKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDLLRVAGEIA 254 (365)
T ss_pred cchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 43210 0001 124688999999999999998763 1 11223333445567777788885443322 211 1
Q ss_pred ---c---CCHHHHHHHHHHhcCCCCCCCCcchHHHHhHHHHHHhccchhhhhccc
Q 010355 352 ---N---KNTFEWKSALRELTRPSSGSFSGVAAEAYKTSELSYNHLEGALKTARL 400 (512)
Q Consensus 352 ---~---~~~~~w~~~l~~l~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~cfl 400 (512)
+ -+......+.+.+. .....-++..||.+.+.++.
T Consensus 255 ~~~~~~~it~~~v~~a~~~~~--------------~~~~~~~i~~l~~~~~~~l~ 295 (365)
T TIGR02928 255 EREGAERVTEDHVEKAQEKIE--------------KDRLLELIRGLPTHSKLVLL 295 (365)
T ss_pred HHcCCCCCCHHHHHHHHHHHH--------------HHHHHHHHHcCCHHHHHHHH
Confidence 1 14444444444431 12234466788887775544
No 9
>PF05729 NACHT: NACHT domain
Probab=99.30 E-value=3e-11 Score=107.39 Aligned_cols=142 Identities=19% Similarity=0.294 Sum_probs=91.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhhhhcCC----CCeEEEEEeCCCCCHH---HHHHHHHHHhCCCCCCCCchHHHHHHHH
Q 010355 171 HMIGAYGMAGVGKTMLVKEVARQAKADKL----FDEVVYAEVSQRPDVK---KIQGQIADKLGLKFYEESESGRARKLCE 243 (512)
Q Consensus 171 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----f~~~~wv~~~~~~~~~---~ll~~i~~~l~~~~~~~~~~~~~~~l~~ 243 (512)
+++.|+|.+|+||||+++.++........ +..++|+..+...... .+...|..++....... ...+..
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~-----~~~~~~ 75 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPI-----EELLQE 75 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhh-----HHHHHH
Confidence 57999999999999999999988776543 3456677765543322 33333433332211111 112333
Q ss_pred HHhCCCeEEEEEeCCCChhh-------------hhhhCCCCCCCCeEEEEEeCCcch--hccccCCccceecCCCCHHHH
Q 010355 244 RLKKEKKILVILDDIWTNLD-------------LENVGIPFGVRGCRVLMTARSQDV--LSSKMDCQNNFLIGVLNESEA 308 (512)
Q Consensus 244 ~l~~~k~~LlVlDdv~~~~~-------------~~~l~~~~~~~gs~iivTtR~~~v--~~~~~~~~~~~~l~~L~~~ea 308 (512)
.+...++++||||+++.... +..+......+++++|||+|.... ..........+.+.+|+.++.
T Consensus 76 ~~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~~~ 155 (166)
T PF05729_consen 76 LLEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEEDI 155 (166)
T ss_pred HHHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHHHH
Confidence 34456899999999964321 112211111568999999998876 222334446899999999999
Q ss_pred HHHHHHHhC
Q 010355 309 RDLFKKLVG 317 (512)
Q Consensus 309 ~~Lf~~~~~ 317 (512)
.+++.+++.
T Consensus 156 ~~~~~~~f~ 164 (166)
T PF05729_consen 156 KQYLRKYFS 164 (166)
T ss_pred HHHHHHHhh
Confidence 999988763
No 10
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.19 E-value=9.1e-10 Score=108.37 Aligned_cols=265 Identities=12% Similarity=0.046 Sum_probs=137.2
Q ss_pred ccccccchHHHHHHHHHhc-----CCCceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCCCHHHHHHHHH
Q 010355 148 YEAFESRMSTLNDVINALK-----NPDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIA 222 (512)
Q Consensus 148 ~~~~~gR~~~l~~l~~~L~-----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~i~ 222 (512)
...|+|++..++.|..++. ....+.+.|+|++|+|||+||+.+++..... + ..+..+....... +...+
T Consensus 3 ~~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~--~---~~~~~~~~~~~~~-l~~~l 76 (305)
T TIGR00635 3 LAEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEMGVN--L---KITSGPALEKPGD-LAAIL 76 (305)
T ss_pred HHHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHhCCC--E---EEeccchhcCchh-HHHHH
Confidence 3579999999999888876 3345678999999999999999999877532 1 1222221112222 22222
Q ss_pred HHhCCCC----C--CCCchHHHHHHHHHHhCCCeEEEEEeCCCChhhhhhhCCCCCCCCeEEEEEeCCcchhccccC-Cc
Q 010355 223 DKLGLKF----Y--EESESGRARKLCERLKKEKKILVILDDIWTNLDLENVGIPFGVRGCRVLMTARSQDVLSSKMD-CQ 295 (512)
Q Consensus 223 ~~l~~~~----~--~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~~~~l~~~~~~~gs~iivTtR~~~v~~~~~~-~~ 295 (512)
..++... + ..-.......++..+. +.+..+|++...+...+... . .+.+-|..||+...+...... ..
T Consensus 77 ~~~~~~~vl~iDEi~~l~~~~~e~l~~~~~-~~~~~~v~~~~~~~~~~~~~---~-~~~~li~~t~~~~~l~~~l~sR~~ 151 (305)
T TIGR00635 77 TNLEEGDVLFIDEIHRLSPAVEELLYPAME-DFRLDIVIGKGPSARSVRLD---L-PPFTLVGATTRAGMLTSPLRDRFG 151 (305)
T ss_pred HhcccCCEEEEehHhhhCHHHHHHhhHHHh-hhheeeeeccCccccceeec---C-CCeEEEEecCCccccCHHHHhhcc
Confidence 2232110 0 0000111122333332 23455556555443333221 1 234556667776443221111 23
Q ss_pred cceecCCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChhHHHHHHHHhccCCHHHHHHHHHHhcCCCCCCCCc
Q 010355 296 NNFLIGVLNESEARDLFKKLVGDKIENNDLKSLAMNIVKACRGLPIAIVTIARALRNKNTFEWKSALRELTRPSSGSFSG 375 (512)
Q Consensus 296 ~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~GlPLai~~ia~~L~~~~~~~w~~~l~~l~~~~~~~~~~ 375 (512)
..+.+.+++.++..+++.+.+..... .--.+....|++.|+|.|..+..+...+ |... ........ .. .
T Consensus 152 ~~~~l~~l~~~e~~~il~~~~~~~~~-~~~~~al~~ia~~~~G~pR~~~~ll~~~-------~~~a-~~~~~~~i-t~-~ 220 (305)
T TIGR00635 152 IILRLEFYTVEELAEIVSRSAGLLNV-EIEPEAALEIARRSRGTPRIANRLLRRV-------RDFA-QVRGQKII-NR-D 220 (305)
T ss_pred eEEEeCCCCHHHHHHHHHHHHHHhCC-CcCHHHHHHHHHHhCCCcchHHHHHHHH-------HHHH-HHcCCCCc-CH-H
Confidence 46789999999999999988753211 1123567899999999997765555432 1111 00011000 00 0
Q ss_pred chHHHHhHHHHHHhccchhhhhccc---cccc--ccchhh-hHhhccccccccchhH-HHHHhhhh
Q 010355 376 VAAEAYKTSELSYNHLEGALKTARL---RAVP--NWELDE-EYCWAGDLNTTLQHLN-EKMAKRRM 434 (512)
Q Consensus 376 ~~~~~~~~l~~sy~~L~~~~k~cfl---~~fp--~~~i~~-~~~~~~g~~~~~~~l~-e~~~~~~~ 434 (512)
........+...|..|+++.+..|. .+++ .+.+.. ...++..-......++ .++.++++
T Consensus 221 ~v~~~l~~l~~~~~~l~~~~~~~L~al~~~~~~~~~~~~~ia~~lg~~~~~~~~~~e~~Li~~~li 286 (305)
T TIGR00635 221 IALKALEMLMIDELGLDEIDRKLLSVLIEQFQGGPVGLKTLAAALGEDADTIEDVYEPYLLQIGFL 286 (305)
T ss_pred HHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhCCCcccHHHHHHHhCCCcchHHHhhhHHHHHcCCc
Confidence 0122222245566777777665443 4553 344444 4444444444444444 24444433
No 11
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.14 E-value=8.9e-10 Score=106.42 Aligned_cols=174 Identities=17% Similarity=0.188 Sum_probs=107.8
Q ss_pred ccCccccccchHHH---HHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCCCHHHHHHHH
Q 010355 145 IKGYEAFESRMSTL---NDVINALKNPDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQI 221 (512)
Q Consensus 145 ~~~~~~~~gR~~~l---~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~i 221 (512)
|.....++|.+..+ .-|..++..+++....+||++|+||||||+.++..... .| ..++...+-..-++.+
T Consensus 20 P~~lde~vGQ~HLlg~~~~lrr~v~~~~l~SmIl~GPPG~GKTTlA~liA~~~~~--~f-----~~~sAv~~gvkdlr~i 92 (436)
T COG2256 20 PKSLDEVVGQEHLLGEGKPLRRAVEAGHLHSMILWGPPGTGKTTLARLIAGTTNA--AF-----EALSAVTSGVKDLREI 92 (436)
T ss_pred CCCHHHhcChHhhhCCCchHHHHHhcCCCceeEEECCCCCCHHHHHHHHHHhhCC--ce-----EEeccccccHHHHHHH
Confidence 44455666666544 23455666788899999999999999999999987653 23 3333332222222222
Q ss_pred HHHhCCCCCCCCchHHHHHHHHHHhCCCeEEEEEeCCCChhh-hhhhCCCCCCCCeEEEE--EeCCcchh--ccccCCcc
Q 010355 222 ADKLGLKFYEESESGRARKLCERLKKEKKILVILDDIWTNLD-LENVGIPFGVRGCRVLM--TARSQDVL--SSKMDCQN 296 (512)
Q Consensus 222 ~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~-~~~l~~~~~~~gs~iiv--TtR~~~v~--~~~~~~~~ 296 (512)
+ ..-.+.+..+++.+|++|.|..... -+...+|.-.+|..|+| ||-++... ....+...
T Consensus 93 ~----------------e~a~~~~~~gr~tiLflDEIHRfnK~QQD~lLp~vE~G~iilIGATTENPsF~ln~ALlSR~~ 156 (436)
T COG2256 93 I----------------EEARKNRLLGRRTILFLDEIHRFNKAQQDALLPHVENGTIILIGATTENPSFELNPALLSRAR 156 (436)
T ss_pred H----------------HHHHHHHhcCCceEEEEehhhhcChhhhhhhhhhhcCCeEEEEeccCCCCCeeecHHHhhhhh
Confidence 2 2222333347899999999975432 22233666678887777 44444321 22345668
Q ss_pred ceecCCCCHHHHHHHHHHHhC-CCC--C--Cc-hhHHHHHHHHHHcCCChh
Q 010355 297 NFLIGVLNESEARDLFKKLVG-DKI--E--NN-DLKSLAMNIVKACRGLPI 341 (512)
Q Consensus 297 ~~~l~~L~~~ea~~Lf~~~~~-~~~--~--~~-~~~~~~~~I~~~~~GlPL 341 (512)
++.+++|+.++...++.+.+- ... . .. --.+...-|+..++|--.
T Consensus 157 vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R 207 (436)
T COG2256 157 VFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDAR 207 (436)
T ss_pred eeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchHH
Confidence 999999999999999998442 111 0 01 113466678888887544
No 12
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.13 E-value=2.5e-09 Score=106.11 Aligned_cols=193 Identities=13% Similarity=0.063 Sum_probs=106.2
Q ss_pred ccCccccccchHHHHHHHHHhc-----CCCceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCCCHHHHHH
Q 010355 145 IKGYEAFESRMSTLNDVINALK-----NPDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQG 219 (512)
Q Consensus 145 ~~~~~~~~gR~~~l~~l~~~L~-----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ll~ 219 (512)
|.....|+||+..++.+..++. ....+.+.|+|++|+|||+||+.+++..... + .++..+. ......+.
T Consensus 21 P~~~~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l~~~--~---~~~~~~~-~~~~~~l~ 94 (328)
T PRK00080 21 PKSLDEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEMGVN--I---RITSGPA-LEKPGDLA 94 (328)
T ss_pred cCCHHHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHhCCC--e---EEEeccc-ccChHHHH
Confidence 4566789999999988877665 3345688999999999999999999987532 1 1222221 11112222
Q ss_pred HHHHHhCCCC----CC-CC-chHHHHHHHHHHhCCCeEEEEEeCCCChhhhhhhCCCCCCCCeEEEEEeCCcchhccccC
Q 010355 220 QIADKLGLKF----YE-ES-ESGRARKLCERLKKEKKILVILDDIWTNLDLENVGIPFGVRGCRVLMTARSQDVLSSKMD 293 (512)
Q Consensus 220 ~i~~~l~~~~----~~-~~-~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~~~~l~~~~~~~gs~iivTtR~~~v~~~~~~ 293 (512)
.++..++... +. .. .......+...+. ..+..+|+++..+...+... . .+.+-|..|++...+......
T Consensus 95 ~~l~~l~~~~vl~IDEi~~l~~~~~e~l~~~~e-~~~~~~~l~~~~~~~~~~~~-l---~~~~li~at~~~~~l~~~L~s 169 (328)
T PRK00080 95 AILTNLEEGDVLFIDEIHRLSPVVEEILYPAME-DFRLDIMIGKGPAARSIRLD-L---PPFTLIGATTRAGLLTSPLRD 169 (328)
T ss_pred HHHHhcccCCEEEEecHhhcchHHHHHHHHHHH-hcceeeeeccCccccceeec-C---CCceEEeecCCcccCCHHHHH
Confidence 3333322110 00 00 0001111222222 23344444443322221111 1 124556666665443221111
Q ss_pred -CccceecCCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChhHHHHHHHH
Q 010355 294 -CQNNFLIGVLNESEARDLFKKLVGDKIENNDLKSLAMNIVKACRGLPIAIVTIARA 349 (512)
Q Consensus 294 -~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~GlPLai~~ia~~ 349 (512)
....+.+.+++.++..+++.+.+..... .--.+.+..|++.|+|.|-.+..+...
T Consensus 170 Rf~~~~~l~~~~~~e~~~il~~~~~~~~~-~~~~~~~~~ia~~~~G~pR~a~~~l~~ 225 (328)
T PRK00080 170 RFGIVQRLEFYTVEELEKIVKRSARILGV-EIDEEGALEIARRSRGTPRIANRLLRR 225 (328)
T ss_pred hcCeeeecCCCCHHHHHHHHHHHHHHcCC-CcCHHHHHHHHHHcCCCchHHHHHHHH
Confidence 1346899999999999999988753221 112357889999999999655555543
No 13
>COG3899 Predicted ATPase [General function prediction only]
Probab=99.08 E-value=1.5e-09 Score=119.44 Aligned_cols=253 Identities=16% Similarity=0.247 Sum_probs=151.7
Q ss_pred ccccchHHHHHHHHHhc---CCCceEEEEEcCCCCcHHHHHHHHHHhhhhc-CCCCeEEEEEeCCCCC---HHHHHHHHH
Q 010355 150 AFESRMSTLNDVINALK---NPDVHMIGAYGMAGVGKTMLVKEVARQAKAD-KLFDEVVYAEVSQRPD---VKKIQGQIA 222 (512)
Q Consensus 150 ~~~gR~~~l~~l~~~L~---~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~~f~~~~wv~~~~~~~---~~~ll~~i~ 222 (512)
+++||+.+++.|...+. .+...++.|.|.+|||||+|+++|......+ ..|-...+-....+.. ..+.+++++
T Consensus 1 ~l~GRe~ev~~Ll~~f~~v~~g~~~~~lv~G~sGIGKsalv~ev~~~i~~~~~~~i~~~f~q~~~~ipl~~lvq~~r~l~ 80 (849)
T COG3899 1 PLYGRETELAQLLAAFDRVSKGRGEVVLVAGESGIGKSALVNEVHKPITQQRGYFIKGKFDQFERNIPLSPLVQAFRDLM 80 (849)
T ss_pred CCCchHhHHHHHHHHHHHHhCCCeEEEEEeecCCCcHHHHHHHHHHHHhccceeeeHhhcccccCCCchHHHHHHHHHHH
Confidence 36899999999998886 5567899999999999999999999887643 2221111111222221 122223332
Q ss_pred HHh-------------------CCCC------------------CC-----CCchHH-----HHHHHHHHhCCCeEEEEE
Q 010355 223 DKL-------------------GLKF------------------YE-----ESESGR-----ARKLCERLKKEKKILVIL 255 (512)
Q Consensus 223 ~~l-------------------~~~~------------------~~-----~~~~~~-----~~~l~~~l~~~k~~LlVl 255 (512)
.++ |... +. ...... ...+.......+|.++|+
T Consensus 81 ~~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~plVi~l 160 (849)
T COG3899 81 GQLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHPLVIVL 160 (849)
T ss_pred HHHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCCeEEEE
Confidence 222 2110 00 000011 122333334567999999
Q ss_pred eCC-CCh-hhhhhhCCCCC--------CCCeEEEEEeCCc-chhccccCCccceecCCCCHHHHHHHHHHHhCCCCCCch
Q 010355 256 DDI-WTN-LDLENVGIPFG--------VRGCRVLMTARSQ-DVLSSKMDCQNNFLIGVLNESEARDLFKKLVGDKIENND 324 (512)
Q Consensus 256 Ddv-~~~-~~~~~l~~~~~--------~~gs~iivTtR~~-~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~ 324 (512)
||+ |-. ..+..+..... .+..-.+.|.+.. ............|.|.||+..+...|....++.....+
T Consensus 161 eDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~~~~~~- 239 (849)
T COG3899 161 EDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLGCTKLLP- 239 (849)
T ss_pred ecccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCCccccc-
Confidence 999 532 22222211100 1112223333332 11122345567999999999999999999987533222
Q ss_pred hHHHHHHHHHHcCCChhHHHHHHHHhccC-------CHHHHHHHHHHhcCCCCCCCCcchHHHHhHHHHHHhccchhhhh
Q 010355 325 LKSLAMNIVKACRGLPIAIVTIARALRNK-------NTFEWKSALRELTRPSSGSFSGVAAEAYKTSELSYNHLEGALKT 397 (512)
Q Consensus 325 ~~~~~~~I~~~~~GlPLai~~ia~~L~~~-------~~~~w~~~l~~l~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~ 397 (512)
.+....|+++..|+|+.+..+-..|... ....|..-...+.. .+....+...|..-.+.||...|.
T Consensus 240 -~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i~~------~~~~~~vv~~l~~rl~kL~~~t~~ 312 (849)
T COG3899 240 -APLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASLGI------LATTDAVVEFLAARLQKLPGTTRE 312 (849)
T ss_pred -chHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhcCC------chhhHHHHHHHHHHHhcCCHHHHH
Confidence 3578899999999999999999998742 33445433333322 112344667799999999999998
Q ss_pred ccc--ccc-cccchhh
Q 010355 398 ARL--RAV-PNWELDE 410 (512)
Q Consensus 398 cfl--~~f-p~~~i~~ 410 (512)
.+. +++ +.|+.+.
T Consensus 313 Vl~~AA~iG~~F~l~~ 328 (849)
T COG3899 313 VLKAAACIGNRFDLDT 328 (849)
T ss_pred HHHHHHHhCccCCHHH
Confidence 777 666 5666655
No 14
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.08 E-value=2.5e-09 Score=109.30 Aligned_cols=182 Identities=14% Similarity=0.172 Sum_probs=109.9
Q ss_pred ccCccccccchHHHHH---HHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCCCHHHHHHHH
Q 010355 145 IKGYEAFESRMSTLND---VINALKNPDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQI 221 (512)
Q Consensus 145 ~~~~~~~~gR~~~l~~---l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~i 221 (512)
|.....|+|+...+.. |..++.....+.+.|+|++|+||||||+.+++.... . |+.++....-..-++.+
T Consensus 8 P~~l~d~vGq~~~v~~~~~L~~~i~~~~~~~ilL~GppGtGKTtLA~~ia~~~~~--~-----~~~l~a~~~~~~~ir~i 80 (413)
T PRK13342 8 PKTLDEVVGQEHLLGPGKPLRRMIEAGRLSSMILWGPPGTGKTTLARIIAGATDA--P-----FEALSAVTSGVKDLREV 80 (413)
T ss_pred CCCHHHhcCcHHHhCcchHHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHHhCC--C-----EEEEecccccHHHHHHH
Confidence 3445678898887666 777777777788999999999999999999987642 2 22222221111112222
Q ss_pred HHHhCCCCCCCCchHHHHHHHHHHhCCCeEEEEEeCCCChh--hhhhhCCCCCCCCeEEEEE--eCCcch--hccccCCc
Q 010355 222 ADKLGLKFYEESESGRARKLCERLKKEKKILVILDDIWTNL--DLENVGIPFGVRGCRVLMT--ARSQDV--LSSKMDCQ 295 (512)
Q Consensus 222 ~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~--~~~~l~~~~~~~gs~iivT--tR~~~v--~~~~~~~~ 295 (512)
+.. .......+++.+|+||+++... ....+. +.-..+..++|. |.+... ........
T Consensus 81 i~~----------------~~~~~~~g~~~vL~IDEi~~l~~~~q~~LL-~~le~~~iilI~att~n~~~~l~~aL~SR~ 143 (413)
T PRK13342 81 IEE----------------ARQRRSAGRRTILFIDEIHRFNKAQQDALL-PHVEDGTITLIGATTENPSFEVNPALLSRA 143 (413)
T ss_pred HHH----------------HHHhhhcCCceEEEEechhhhCHHHHHHHH-HHhhcCcEEEEEeCCCChhhhccHHHhccc
Confidence 211 1111223578999999998542 333331 212234444443 333221 11122334
Q ss_pred cceecCCCCHHHHHHHHHHHhCCC-CCC-chhHHHHHHHHHHcCCChhHHHHHHHHh
Q 010355 296 NNFLIGVLNESEARDLFKKLVGDK-IEN-NDLKSLAMNIVKACRGLPIAIVTIARAL 350 (512)
Q Consensus 296 ~~~~l~~L~~~ea~~Lf~~~~~~~-~~~-~~~~~~~~~I~~~~~GlPLai~~ia~~L 350 (512)
..+.+.+++.++...++.+.+... ... .-..+....|++.|+|.|..+..+...+
T Consensus 144 ~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~Gd~R~aln~Le~~ 200 (413)
T PRK13342 144 QVFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANGDARRALNLLELA 200 (413)
T ss_pred eeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 689999999999999999876421 111 2224567889999999998775554443
No 15
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=98.99 E-value=1.2e-08 Score=107.29 Aligned_cols=234 Identities=18% Similarity=0.145 Sum_probs=148.8
Q ss_pred ccCccccccchHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCC-CCHHHHHHHHHH
Q 010355 145 IKGYEAFESRMSTLNDVINALKNPDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQR-PDVKKIQGQIAD 223 (512)
Q Consensus 145 ~~~~~~~~gR~~~l~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-~~~~~ll~~i~~ 223 (512)
|..+...+-|..-++.|.. ..+.+.+.|.-|+|.|||||+.+++.... .-..+.|.++... .++..++..++.
T Consensus 15 P~~~~~~v~R~rL~~~L~~---~~~~RL~li~APAGfGKttl~aq~~~~~~---~~~~v~Wlslde~dndp~rF~~yLi~ 88 (894)
T COG2909 15 PVRPDNYVVRPRLLDRLRR---ANDYRLILISAPAGFGKTTLLAQWRELAA---DGAAVAWLSLDESDNDPARFLSYLIA 88 (894)
T ss_pred CCCcccccccHHHHHHHhc---CCCceEEEEeCCCCCcHHHHHHHHHHhcC---cccceeEeecCCccCCHHHHHHHHHH
Confidence 3445566777655544332 34789999999999999999999987433 2457899999754 578889999988
Q ss_pred HhCCCCCCCC--------------chHHHHHHHHHHhC-CCeEEEEEeCCCChh------hhhhhCCCCCCCCeEEEEEe
Q 010355 224 KLGLKFYEES--------------ESGRARKLCERLKK-EKKILVILDDIWTNL------DLENVGIPFGVRGCRVLMTA 282 (512)
Q Consensus 224 ~l~~~~~~~~--------------~~~~~~~l~~~l~~-~k~~LlVlDdv~~~~------~~~~l~~~~~~~gs~iivTt 282 (512)
.++.-.+... ....+..++..+.. .+++++||||..-.. .+..+ +....++..+||||
T Consensus 89 al~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fL-l~~~P~~l~lvv~S 167 (894)
T COG2909 89 ALQQATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFL-LKHAPENLTLVVTS 167 (894)
T ss_pred HHHHhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHH-HHhCCCCeEEEEEe
Confidence 8863322211 11234455555542 478999999985331 22222 22225788999999
Q ss_pred CCcchhcc--ccCCccceecC----CCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChhHHHHHHHHhccC-CH
Q 010355 283 RSQDVLSS--KMDCQNNFLIG----VLNESEARDLFKKLVGDKIENNDLKSLAMNIVKACRGLPIAIVTIARALRNK-NT 355 (512)
Q Consensus 283 R~~~v~~~--~~~~~~~~~l~----~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~GlPLai~~ia~~L~~~-~~ 355 (512)
|+..-... ..-....+++. .|+.+|+.+||....+.... ..-++.|++...|-+-|+.+++=.+++. +.
T Consensus 168 R~rP~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~~l~Ld----~~~~~~L~~~teGW~~al~L~aLa~~~~~~~ 243 (894)
T COG2909 168 RSRPQLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDRGSLPLD----AADLKALYDRTEGWAAALQLIALALRNNTSA 243 (894)
T ss_pred ccCCCCcccceeehhhHHhcChHhhcCChHHHHHHHHHcCCCCCC----hHHHHHHHhhcccHHHHHHHHHHHccCCCcH
Confidence 99864311 01112233343 58999999999988654333 2357789999999999999999888733 33
Q ss_pred HHHHHHHHHhcCCCCCCCCcchHHHHhH-HHHHHhccchhhhhccc
Q 010355 356 FEWKSALRELTRPSSGSFSGVAAEAYKT-SELSYNHLEGALKTARL 400 (512)
Q Consensus 356 ~~w~~~l~~l~~~~~~~~~~~~~~~~~~-l~~sy~~L~~~~k~cfl 400 (512)
+.-...++. ....+... ..--++.||+++|..++
T Consensus 244 ~q~~~~LsG-----------~~~~l~dYL~eeVld~Lp~~l~~FLl 278 (894)
T COG2909 244 EQSLRGLSG-----------AASHLSDYLVEEVLDRLPPELRDFLL 278 (894)
T ss_pred HHHhhhccc-----------hHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 322221111 11222222 23346788888887777
No 16
>PRK06893 DNA replication initiation factor; Validated
Probab=98.95 E-value=1.3e-08 Score=95.38 Aligned_cols=154 Identities=16% Similarity=0.162 Sum_probs=94.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHhC
Q 010355 168 PDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIADKLGLKFYEESESGRARKLCERLKK 247 (512)
Q Consensus 168 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~i~~~l~~~~~~~~~~~~~~~l~~~l~~ 247 (512)
...+.+.|+|++|+|||+|++.+++....+ ...+.|+.+.... ... ..+.+.+.
T Consensus 37 ~~~~~l~l~G~~G~GKThL~~ai~~~~~~~--~~~~~y~~~~~~~---~~~--------------------~~~~~~~~- 90 (229)
T PRK06893 37 LQQPFFYIWGGKSSGKSHLLKAVSNHYLLN--QRTAIYIPLSKSQ---YFS--------------------PAVLENLE- 90 (229)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHHHHHHHc--CCCeEEeeHHHhh---hhh--------------------HHHHhhcc-
Confidence 344678999999999999999999987543 3455677653210 000 11222232
Q ss_pred CCeEEEEEeCCCCh---hhhhh-hCCCCC---CCCeEEEEEeCCc----------chhccccCCccceecCCCCHHHHHH
Q 010355 248 EKKILVILDDIWTN---LDLEN-VGIPFG---VRGCRVLMTARSQ----------DVLSSKMDCQNNFLIGVLNESEARD 310 (512)
Q Consensus 248 ~k~~LlVlDdv~~~---~~~~~-l~~~~~---~~gs~iivTtR~~----------~v~~~~~~~~~~~~l~~L~~~ea~~ 310 (512)
+.-+|||||++.. ..|.. +...+. ..|..+||+|.+. .+.. .+.....+++++++.++.++
T Consensus 91 -~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~s-Rl~~g~~~~l~~pd~e~~~~ 168 (229)
T PRK06893 91 -QQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLAS-RLTWGEIYQLNDLTDEQKII 168 (229)
T ss_pred -cCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHH-HHhcCCeeeCCCCCHHHHHH
Confidence 3459999999863 23332 111111 3455565544433 1211 12334688999999999999
Q ss_pred HHHHHhCCCCCCchhHHHHHHHHHHcCCChhHHHHHHHHh
Q 010355 311 LFKKLVGDKIENNDLKSLAMNIVKACRGLPIAIVTIARAL 350 (512)
Q Consensus 311 Lf~~~~~~~~~~~~~~~~~~~I~~~~~GlPLai~~ia~~L 350 (512)
++.+.+..... .--.++..-|++.+.|..-.+..+-..|
T Consensus 169 iL~~~a~~~~l-~l~~~v~~~L~~~~~~d~r~l~~~l~~l 207 (229)
T PRK06893 169 VLQRNAYQRGI-ELSDEVANFLLKRLDRDMHTLFDALDLL 207 (229)
T ss_pred HHHHHHHHcCC-CCCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 99988753221 1124677889999988877766555544
No 17
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.93 E-value=1.1e-07 Score=100.94 Aligned_cols=169 Identities=16% Similarity=0.131 Sum_probs=105.8
Q ss_pred ccccccchHHHHHHHHHhc----CC-CceEEEEEcCCCCcHHHHHHHHHHhhhhc---CCC--CeEEEEEeCCCCCHHHH
Q 010355 148 YEAFESRMSTLNDVINALK----NP-DVHMIGAYGMAGVGKTMLVKEVARQAKAD---KLF--DEVVYAEVSQRPDVKKI 217 (512)
Q Consensus 148 ~~~~~gR~~~l~~l~~~L~----~~-~~~vi~I~G~gGiGKTtLa~~v~~~~~~~---~~f--~~~~wv~~~~~~~~~~l 217 (512)
|..+.||+.++++|...|. .. ...++.|+|++|+|||++++.|...+... ... -.+++|++....++..+
T Consensus 754 PD~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sI 833 (1164)
T PTZ00112 754 PKYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAA 833 (1164)
T ss_pred CCcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHH
Confidence 4568899999999988776 22 23567899999999999999998876431 111 23677887777788899
Q ss_pred HHHHHHHhCCCCCC--CCchHHHHHHHHHHhC--CCeEEEEEeCCCChhh-----hhh-hCCCCCCCCeEEEE--EeCCc
Q 010355 218 QGQIADKLGLKFYE--ESESGRARKLCERLKK--EKKILVILDDIWTNLD-----LEN-VGIPFGVRGCRVLM--TARSQ 285 (512)
Q Consensus 218 l~~i~~~l~~~~~~--~~~~~~~~~l~~~l~~--~k~~LlVlDdv~~~~~-----~~~-l~~~~~~~gs~iiv--TtR~~ 285 (512)
+..|..+|....+. ......+..++..+.. ....+||||+|..... +-. +..+. ..+++|+| +|...
T Consensus 834 YqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~-~s~SKLiLIGISNdl 912 (1164)
T PTZ00112 834 YQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPT-KINSKLVLIAISNTM 912 (1164)
T ss_pred HHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhh-ccCCeEEEEEecCch
Confidence 99999888433322 2223445566655532 2346999999974421 111 11121 23444443 34322
Q ss_pred chh----cccc--CCccceecCCCCHHHHHHHHHHHhC
Q 010355 286 DVL----SSKM--DCQNNFLIGVLNESEARDLFKKLVG 317 (512)
Q Consensus 286 ~v~----~~~~--~~~~~~~l~~L~~~ea~~Lf~~~~~ 317 (512)
... .... -....+...|++.++-..++..++.
T Consensus 913 DLperLdPRLRSRLg~eeIvF~PYTaEQL~dILk~RAe 950 (1164)
T PTZ00112 913 DLPERLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLE 950 (1164)
T ss_pred hcchhhhhhhhhccccccccCCCCCHHHHHHHHHHHHH
Confidence 111 1100 1123467799999999999998875
No 18
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.91 E-value=4.6e-09 Score=89.47 Aligned_cols=116 Identities=22% Similarity=0.335 Sum_probs=82.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhhhc---CCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCC-CCchHHHHHHHHH
Q 010355 169 DVHMIGAYGMAGVGKTMLVKEVARQAKAD---KLFDEVVYAEVSQRPDVKKIQGQIADKLGLKFYE-ESESGRARKLCER 244 (512)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~---~~f~~~~wv~~~~~~~~~~ll~~i~~~l~~~~~~-~~~~~~~~~l~~~ 244 (512)
+.+++.|+|.+|+|||++++.+++..... ..-..++|+.++...+...+...|+..++..... .+.......+.+.
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~ 82 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDA 82 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHH
Confidence 35789999999999999999999876421 0134577999988889999999999999987666 4556667788888
Q ss_pred HhCCCeEEEEEeCCCCh---hhhhhhCCCCCCCCeEEEEEeCC
Q 010355 245 LKKEKKILVILDDIWTN---LDLENVGIPFGVRGCRVLMTARS 284 (512)
Q Consensus 245 l~~~k~~LlVlDdv~~~---~~~~~l~~~~~~~gs~iivTtR~ 284 (512)
+.+.+..+||||++... ..+..+.......+.+||++.+.
T Consensus 83 l~~~~~~~lviDe~~~l~~~~~l~~l~~l~~~~~~~vvl~G~~ 125 (131)
T PF13401_consen 83 LDRRRVVLLVIDEADHLFSDEFLEFLRSLLNESNIKVVLVGTP 125 (131)
T ss_dssp HHHCTEEEEEEETTHHHHTHHHHHHHHHHTCSCBEEEEEEESS
T ss_pred HHhcCCeEEEEeChHhcCCHHHHHHHHHHHhCCCCeEEEEECh
Confidence 87766789999999654 22333322223667788888775
No 19
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.88 E-value=7.4e-08 Score=101.61 Aligned_cols=182 Identities=13% Similarity=0.169 Sum_probs=113.8
Q ss_pred ccCccccccchHHHHHHHHHhcCCC-ceEEEEEcCCCCcHHHHHHHHHHhhhhcC-------------------CCCeEE
Q 010355 145 IKGYEAFESRMSTLNDVINALKNPD-VHMIGAYGMAGVGKTMLVKEVARQAKADK-------------------LFDEVV 204 (512)
Q Consensus 145 ~~~~~~~~gR~~~l~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-------------------~f~~~~ 204 (512)
|.....++|.+..++.|.+++..++ .+.+.++|..|+||||+|+.+++.+.-.. .|..++
T Consensus 12 PqtFdEVIGQe~Vv~~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~~G~h~Dvi 91 (830)
T PRK07003 12 PKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEGRFVDYV 91 (830)
T ss_pred CCcHHHHcCcHHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHhcCCCceEE
Confidence 4456678999999999999998765 45668999999999999999988764211 111223
Q ss_pred EEEeCCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHh----CCCeEEEEEeCCCChh--hhhhhCCCCC--CCCe
Q 010355 205 YAEVSQRPDVKKIQGQIADKLGLKFYEESESGRARKLCERLK----KEKKILVILDDIWTNL--DLENVGIPFG--VRGC 276 (512)
Q Consensus 205 wv~~~~~~~~~~ll~~i~~~l~~~~~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~~--~~~~l~~~~~--~~gs 276 (512)
+++.+...... .+..+.+.+. .++.-++|||++.... .++.+.-.+. ..++
T Consensus 92 EIDAas~rgVD---------------------dIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v 150 (830)
T PRK07003 92 EMDAASNRGVD---------------------EMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHV 150 (830)
T ss_pred EecccccccHH---------------------HHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCe
Confidence 33322222221 1222222221 2455688999997553 3444421111 4577
Q ss_pred EEEEEeCCcchh-ccccCCccceecCCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCCh-hHHHHHHH
Q 010355 277 RVLMTARSQDVL-SSKMDCQNNFLIGVLNESEARDLFKKLVGDKIENNDLKSLAMNIVKACRGLP-IAIVTIAR 348 (512)
Q Consensus 277 ~iivTtR~~~v~-~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~GlP-Lai~~ia~ 348 (512)
++|+||++..-. .........+.+++|+.++....+.+.+...... --.+....|++.++|.. -||.++-.
T Consensus 151 ~FILaTtd~~KIp~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI~-id~eAL~lIA~~A~GsmRdALsLLdQ 223 (830)
T PRK07003 151 KFILATTDPQKIPVTVLSRCLQFNLKQMPAGHIVSHLERILGEERIA-FEPQALRLLARAAQGSMRDALSLTDQ 223 (830)
T ss_pred EEEEEECChhhccchhhhheEEEecCCcCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 888877765432 2233445789999999999999999887532211 12356788999998865 45555433
No 20
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.87 E-value=1.5e-07 Score=101.19 Aligned_cols=182 Identities=15% Similarity=0.196 Sum_probs=109.1
Q ss_pred ccCccccccchHHHHHHHHHhcCCCceE-EEEEcCCCCcHHHHHHHHHHhhhhcCC-------------------CCeEE
Q 010355 145 IKGYEAFESRMSTLNDVINALKNPDVHM-IGAYGMAGVGKTMLVKEVARQAKADKL-------------------FDEVV 204 (512)
Q Consensus 145 ~~~~~~~~gR~~~l~~l~~~L~~~~~~v-i~I~G~gGiGKTtLa~~v~~~~~~~~~-------------------f~~~~ 204 (512)
|.....++|.+..+..|.+++..++.+- +.++|+.|+||||+|+.+++...-... |.-++
T Consensus 12 P~tFddIIGQe~Iv~~LknaI~~~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~Dvi 91 (944)
T PRK14949 12 PATFEQMVGQSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFVDLI 91 (944)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCceEE
Confidence 3456678999999999999988766654 589999999999999999987642111 11112
Q ss_pred EEEeCCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHhCCCeEEEEEeCCCCh--hhhhhhCCCCC--CCCeEEEE
Q 010355 205 YAEVSQRPDVKKIQGQIADKLGLKFYEESESGRARKLCERLKKEKKILVILDDIWTN--LDLENVGIPFG--VRGCRVLM 280 (512)
Q Consensus 205 wv~~~~~~~~~~ll~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~--~~~~~l~~~~~--~~gs~iiv 280 (512)
++.......+.. ++.|...+ ...-..+++-++|||++... ..++.+.-.+- ..++++|+
T Consensus 92 EidAas~~kVDd-IReLie~v----------------~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFIL 154 (944)
T PRK14949 92 EVDAASRTKVDD-TRELLDNV----------------QYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLL 154 (944)
T ss_pred EeccccccCHHH-HHHHHHHH----------------HhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEE
Confidence 222211111111 12222211 11111356789999999754 33444321111 34566666
Q ss_pred EeCCc-chhccccCCccceecCCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChhHHH
Q 010355 281 TARSQ-DVLSSKMDCQNNFLIGVLNESEARDLFKKLVGDKIENNDLKSLAMNIVKACRGLPIAIV 344 (512)
Q Consensus 281 TtR~~-~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~GlPLai~ 344 (512)
+|... .+..........|++.+|+.++...++.+.+..... .--.+.+..|++.++|.|.-+.
T Consensus 155 aTTe~~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~EgI-~~edeAL~lIA~~S~Gd~R~AL 218 (944)
T PRK14949 155 ATTDPQKLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQEQL-PFEAEALTLLAKAANGSMRDAL 218 (944)
T ss_pred ECCCchhchHHHHHhheEEeCCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHH
Confidence 55543 333222344578999999999999999887643211 1123467788889999876433
No 21
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.86 E-value=8.7e-08 Score=95.73 Aligned_cols=203 Identities=15% Similarity=0.115 Sum_probs=113.5
Q ss_pred ccCccccccchHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCCC-HHHHHH---H
Q 010355 145 IKGYEAFESRMSTLNDVINALKNPDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPD-VKKIQG---Q 220 (512)
Q Consensus 145 ~~~~~~~~gR~~~l~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~-~~~ll~---~ 220 (512)
|.....|+|+...++.|..++..+..+.+.|+|++|+||||+|+.+++.......-...+.++++.... ....+. .
T Consensus 11 P~~~~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 90 (337)
T PRK12402 11 PALLEDILGQDEVVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVADFFDQGKKYLVEDPR 90 (337)
T ss_pred CCcHHHhcCCHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechhhhhhcchhhhhcCcc
Confidence 344567899999999999998877767889999999999999999998764321112234454432110 000000 0
Q ss_pred HHHHhCCC-CCCCCchHHHHHHHHHHhC-----CCeEEEEEeCCCChh--hhhhhCCCC--CCCCeEEEEEeCCcc-hhc
Q 010355 221 IADKLGLK-FYEESESGRARKLCERLKK-----EKKILVILDDIWTNL--DLENVGIPF--GVRGCRVLMTARSQD-VLS 289 (512)
Q Consensus 221 i~~~l~~~-~~~~~~~~~~~~l~~~l~~-----~k~~LlVlDdv~~~~--~~~~l~~~~--~~~gs~iivTtR~~~-v~~ 289 (512)
....++.. ............+.+.... ..+-+||||++.... ....+...+ ....+++|+||.... +..
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~~~~~ 170 (337)
T PRK12402 91 FAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQPSKLIP 170 (337)
T ss_pred hhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCChhhCch
Confidence 00000000 0001111222233222211 234589999996442 122221111 134567887775432 211
Q ss_pred cccCCccceecCCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChhHHHHHHH
Q 010355 290 SKMDCQNNFLIGVLNESEARDLFKKLVGDKIENNDLKSLAMNIVKACRGLPIAIVTIAR 348 (512)
Q Consensus 290 ~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~GlPLai~~ia~ 348 (512)
........+.+.+++.++...++.+.+...... --.+.+..|++.++|.+-.+.....
T Consensus 171 ~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~~-~~~~al~~l~~~~~gdlr~l~~~l~ 228 (337)
T PRK12402 171 PIRSRCLPLFFRAPTDDELVDVLESIAEAEGVD-YDDDGLELIAYYAGGDLRKAILTLQ 228 (337)
T ss_pred hhcCCceEEEecCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 122334678899999999999998876422211 1245778899999998776654443
No 22
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.85 E-value=2.7e-08 Score=93.34 Aligned_cols=169 Identities=15% Similarity=0.171 Sum_probs=104.0
Q ss_pred chHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCC
Q 010355 154 RMSTLNDVINALKNPDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIADKLGLKFYEES 233 (512)
Q Consensus 154 R~~~l~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~i~~~l~~~~~~~~ 233 (512)
....+..+..++.....+.+.|+|++|+|||+||+.+++..... ....+++++..-.. ..
T Consensus 22 ~~~~~~~l~~~~~~~~~~~lll~G~~G~GKT~la~~~~~~~~~~--~~~~~~i~~~~~~~------~~------------ 81 (226)
T TIGR03420 22 NAELLAALRQLAAGKGDRFLYLWGESGSGKSHLLQAACAAAEER--GKSAIYLPLAELAQ------AD------------ 81 (226)
T ss_pred cHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHHHhc--CCcEEEEeHHHHHH------hH------------
Confidence 45567777777666667889999999999999999999876532 34556665543211 00
Q ss_pred chHHHHHHHHHHhCCCeEEEEEeCCCChh---hhh-hhCCCC---CCCCeEEEEEeCCcchh--------ccccCCccce
Q 010355 234 ESGRARKLCERLKKEKKILVILDDIWTNL---DLE-NVGIPF---GVRGCRVLMTARSQDVL--------SSKMDCQNNF 298 (512)
Q Consensus 234 ~~~~~~~l~~~l~~~k~~LlVlDdv~~~~---~~~-~l~~~~---~~~gs~iivTtR~~~v~--------~~~~~~~~~~ 298 (512)
..+...+. +.-+|||||+.... .|. .+...+ ...+.++|+||+..... .........+
T Consensus 82 -----~~~~~~~~--~~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r~~~~~~i 154 (226)
T TIGR03420 82 -----PEVLEGLE--QADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTRLAWGLVF 154 (226)
T ss_pred -----HHHHhhcc--cCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHHHHhcCeeE
Confidence 01112222 23489999997542 222 221111 12345788888754311 0011123578
Q ss_pred ecCCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChhHHHHHHHHh
Q 010355 299 LIGVLNESEARDLFKKLVGDKIENNDLKSLAMNIVKACRGLPIAIVTIARAL 350 (512)
Q Consensus 299 ~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~GlPLai~~ia~~L 350 (512)
.+.+++.++...++...+..... .--.+....|.+.++|+|..+..+...+
T Consensus 155 ~l~~l~~~e~~~~l~~~~~~~~~-~~~~~~l~~L~~~~~gn~r~L~~~l~~~ 205 (226)
T TIGR03420 155 QLPPLSDEEKIAALQSRAARRGL-QLPDEVADYLLRHGSRDMGSLMALLDAL 205 (226)
T ss_pred ecCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 99999999999999876531111 1123567788889999998887775544
No 23
>PTZ00202 tuzin; Provisional
Probab=98.84 E-value=1.9e-07 Score=92.26 Aligned_cols=167 Identities=16% Similarity=0.205 Sum_probs=107.5
Q ss_pred ccccccCccccccchHHHHHHHHHhcC---CCceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCCCHHHH
Q 010355 141 WLTSIKGYEAFESRMSTLNDVINALKN---PDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKI 217 (512)
Q Consensus 141 ~~~~~~~~~~~~gR~~~l~~l~~~L~~---~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~l 217 (512)
....|+....|+||+.++..|...|.+ ...++++|.|++|+|||||++.+..... + ..++++.. +..++
T Consensus 254 ~~~lPa~~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l~----~-~qL~vNpr---g~eEl 325 (550)
T PTZ00202 254 LQSAPAVIRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKEG----M-PAVFVDVR---GTEDT 325 (550)
T ss_pred ccCCCCCccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcCC----c-eEEEECCC---CHHHH
Confidence 345677888999999999999998863 2346899999999999999999986654 1 13333333 77999
Q ss_pred HHHHHHHhCCCCCCCCchHHHHHHHHHHh----C-CCeEEEEEeCC--CChh-hhhhh-CCCCCCCCeEEEEEeCCcchh
Q 010355 218 QGQIADKLGLKFYEESESGRARKLCERLK----K-EKKILVILDDI--WTNL-DLENV-GIPFGVRGCRVLMTARSQDVL 288 (512)
Q Consensus 218 l~~i~~~l~~~~~~~~~~~~~~~l~~~l~----~-~k~~LlVlDdv--~~~~-~~~~l-~~~~~~~gs~iivTtR~~~v~ 288 (512)
++.|+.+||.+.. .........+.+.+. . +++.+||+==- .+.. ..+.. .+.....-|+|++---.+.+.
T Consensus 326 Lr~LL~ALGV~p~-~~k~dLLrqIqeaLl~~~~e~GrtPVLII~lreg~~l~rvyne~v~la~drr~ch~v~evpleslt 404 (550)
T PTZ00202 326 LRSVVKALGVPNV-EACGDLLDFISEACRRAKKMNGETPLLVLKLREGSSLQRVYNEVVALACDRRLCHVVIEVPLESLT 404 (550)
T ss_pred HHHHHHHcCCCCc-ccHHHHHHHHHHHHHHHHHhCCCCEEEEEEecCCCcHHHHHHHHHHHHccchhheeeeeehHhhcc
Confidence 9999999998432 222344444444443 2 56666665422 1111 11111 122223457777654443321
Q ss_pred --ccccCCccceecCCCCHHHHHHHHHHHh
Q 010355 289 --SSKMDCQNNFLIGVLNESEARDLFKKLV 316 (512)
Q Consensus 289 --~~~~~~~~~~~l~~L~~~ea~~Lf~~~~ 316 (512)
....+....|.+++++..+|..+..+.+
T Consensus 405 ~~~~~lprldf~~vp~fsr~qaf~y~~h~~ 434 (550)
T PTZ00202 405 IANTLLPRLDFYLVPNFSRSQAFAYTQHAI 434 (550)
T ss_pred hhcccCccceeEecCCCCHHHHHHHHhhcc
Confidence 2234555788999999999998877654
No 24
>COG3903 Predicted ATPase [General function prediction only]
Probab=98.82 E-value=1.1e-08 Score=99.72 Aligned_cols=239 Identities=21% Similarity=0.228 Sum_probs=160.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhhhcCCC-CeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHhC
Q 010355 169 DVHMIGAYGMAGVGKTMLVKEVARQAKADKLF-DEVVYAEVSQRPDVKKIQGQIADKLGLKFYEESESGRARKLCERLKK 247 (512)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f-~~~~wv~~~~~~~~~~ll~~i~~~l~~~~~~~~~~~~~~~l~~~l~~ 247 (512)
..+.+.++|.|||||||++-++.. .. .-| +.+.++...+..+...+.-.+...++...... ......+..++.
T Consensus 13 ~~RlvtL~g~ggvgkttl~~~~a~-~~--~~~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~~~g--~~~~~~~~~~~~- 86 (414)
T COG3903 13 ALRLVTLTGAGGVGKTTLALQAAH-AA--SEYADGVAFVDLAPITDPALVFPTLAGALGLHVQPG--DSAVDTLVRRIG- 86 (414)
T ss_pred hhheeeeeccCccceehhhhhhHh-Hh--hhcccceeeeeccccCchhHhHHHHHhhcccccccc--hHHHHHHHHHHh-
Confidence 358899999999999999999998 44 336 56667777776677777766677787754331 223335555555
Q ss_pred CCeEEEEEeCCCChhh-hhhh--CCCCCCCCeEEEEEeCCcchhccccCCccceecCCCCHH-HHHHHHHHHhC----CC
Q 010355 248 EKKILVILDDIWTNLD-LENV--GIPFGVRGCRVLMTARSQDVLSSKMDCQNNFLIGVLNES-EARDLFKKLVG----DK 319 (512)
Q Consensus 248 ~k~~LlVlDdv~~~~~-~~~l--~~~~~~~gs~iivTtR~~~v~~~~~~~~~~~~l~~L~~~-ea~~Lf~~~~~----~~ 319 (512)
.+|.++|+||...... ...+ .+....+.-.|+.|+|.... ........+.+|+.. ++.++|...+. .-
T Consensus 87 ~rr~llvldncehl~~~~a~~i~all~~~~~~~~~atsre~~l----~~ge~~~~~~~L~~~d~a~~lf~~ra~~~~~~f 162 (414)
T COG3903 87 DRRALLVLDNCEHLLDACAALIVALLGACPRLAILATSREAIL----VAGEVHRRVPSLSLFDEAIELFVCRAVLVALSF 162 (414)
T ss_pred hhhHHHHhcCcHHHHHHHHHHHHHHHccchhhhhHHHhHhhhc----ccccccccCCccccCCchhHHHHHHHHHhccce
Confidence 5899999999865422 1111 11112445568888887643 334566777888776 68888876653 11
Q ss_pred CCCchhHHHHHHHHHHcCCChhHHHHHHHHhccCCHHHHHHHHHH----hcCCCCCCCCcchHHHHhHHHHHHhccchhh
Q 010355 320 IENNDLKSLAMNIVKACRGLPIAIVTIARALRNKNTFEWKSALRE----LTRPSSGSFSGVAAEAYKTSELSYNHLEGAL 395 (512)
Q Consensus 320 ~~~~~~~~~~~~I~~~~~GlPLai~~ia~~L~~~~~~~w~~~l~~----l~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~ 395 (512)
............|+++..|.|++|..+++..+...+.+....|+. +... ........+.....|.+||.-|....
T Consensus 163 ~l~~~~~a~v~~icr~ldg~~laielaaarv~sl~~~~i~~~L~drf~ll~~~-~r~a~~~~qtl~asl~ws~~lLtgwe 241 (414)
T COG3903 163 WLTDDNAAAVAEICRRLDGIPLAIELAAARVRSLSPDEIAAGLRDRFRLLTGG-ARLAVLRQQTLRASLDWSYALLTGWE 241 (414)
T ss_pred eecCCchHHHHHHHHHhhcchHHHHHHHHHHHhcCHHHHHHHHhhHHHHHhcc-cccchhHHHhccchhhhhhHhhhhHH
Confidence 112223457889999999999999999999998766655544432 3322 22333346788999999999999988
Q ss_pred hhccc--cccc-ccchhhhHhhcccc
Q 010355 396 KTARL--RAVP-NWELDEEYCWAGDL 418 (512)
Q Consensus 396 k~cfl--~~fp-~~~i~~~~~~~~g~ 418 (512)
+-.|- +.|. .|.-....|.+.|-
T Consensus 242 ~~~~~rLa~~~g~f~~~l~~~~a~g~ 267 (414)
T COG3903 242 RALFGRLAVFVGGFDLGLALAVAAGA 267 (414)
T ss_pred HHHhcchhhhhhhhcccHHHHHhcCC
Confidence 87777 7775 66665555555543
No 25
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.81 E-value=4e-07 Score=90.63 Aligned_cols=195 Identities=23% Similarity=0.299 Sum_probs=127.1
Q ss_pred ccccchHHHHHHHHHhc----CCCceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHh
Q 010355 150 AFESRMSTLNDVINALK----NPDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIADKL 225 (512)
Q Consensus 150 ~~~gR~~~l~~l~~~L~----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~i~~~l 225 (512)
.+.+|+.+++++...|. +..+..+.|+|.+|+|||++++.++........-..+++|++....++..++..|+.++
T Consensus 18 ~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~~i~~~~ 97 (366)
T COG1474 18 ELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLSKILNKL 97 (366)
T ss_pred cccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHHHHHHHHHc
Confidence 38899999999987765 44445599999999999999999999887542222278999999999999999999999
Q ss_pred C-CCCCCCCchHHHHHHHHHHhC-CCeEEEEEeCCCChhhh-----hhh-CCCCCCCCeEEEE--EeCCcchh-------
Q 010355 226 G-LKFYEESESGRARKLCERLKK-EKKILVILDDIWTNLDL-----ENV-GIPFGVRGCRVLM--TARSQDVL------- 288 (512)
Q Consensus 226 ~-~~~~~~~~~~~~~~l~~~l~~-~k~~LlVlDdv~~~~~~-----~~l-~~~~~~~gs~iiv--TtR~~~v~------- 288 (512)
+ .+....+..+....+.+.+.. ++.++||||++.....- -.+ +.+. ...++|++ .+-.....
T Consensus 98 ~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~-~~~~~v~vi~i~n~~~~~~~ld~rv 176 (366)
T COG1474 98 GKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPG-ENKVKVSIIAVSNDDKFLDYLDPRV 176 (366)
T ss_pred CCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhcc-ccceeEEEEEEeccHHHHHHhhhhh
Confidence 6 333335556667777777764 67899999999754322 122 2221 22444333 33322211
Q ss_pred ccccCCccceecCCCCHHHHHHHHHHHhC----CCCCCchhHHHHHHHHHHcCC-ChhHHHHH
Q 010355 289 SSKMDCQNNFLIGVLNESEARDLFKKLVG----DKIENNDLKSLAMNIVKACRG-LPIAIVTI 346 (512)
Q Consensus 289 ~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~----~~~~~~~~~~~~~~I~~~~~G-lPLai~~i 346 (512)
....+. ..+..+|-+.++-...+..++. .....+..-+.+..++..-+| .-.||.++
T Consensus 177 ~s~l~~-~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidil 238 (366)
T COG1474 177 KSSLGP-SEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDIL 238 (366)
T ss_pred hhccCc-ceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHHHH
Confidence 111222 3478899999999999988773 223334444444455555554 33444443
No 26
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.78 E-value=3.7e-07 Score=90.45 Aligned_cols=186 Identities=9% Similarity=0.093 Sum_probs=108.4
Q ss_pred ccCccccccchHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCC-eEEEEEeCCCCCHHHHHHHHHH
Q 010355 145 IKGYEAFESRMSTLNDVINALKNPDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFD-EVVYAEVSQRPDVKKIQGQIAD 223 (512)
Q Consensus 145 ~~~~~~~~gR~~~l~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~-~~~wv~~~~~~~~~~ll~~i~~ 223 (512)
|.....++|+...++.|..++.....+.+.|+|++|+||||+|+.+++...... +. ..+-++.+...... .....+.
T Consensus 13 P~~~~~~~g~~~~~~~l~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~-~~~~~i~~~~~~~~~~~-~~~~~i~ 90 (319)
T PRK00440 13 PRTLDEIVGQEEIVERLKSYVKEKNMPHLLFAGPPGTGKTTAALALARELYGED-WRENFLELNASDERGID-VIRNKIK 90 (319)
T ss_pred CCcHHHhcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHcCCc-cccceEEeccccccchH-HHHHHHH
Confidence 344567899999999999999877777789999999999999999998764321 21 11222222222221 1111111
Q ss_pred HhCCCCCCCCchHHHHHHHHHHhCCCeEEEEEeCCCChh--hhhhhC--CCCCCCCeEEEEEeCCcc-hhccccCCccce
Q 010355 224 KLGLKFYEESESGRARKLCERLKKEKKILVILDDIWTNL--DLENVG--IPFGVRGCRVLMTARSQD-VLSSKMDCQNNF 298 (512)
Q Consensus 224 ~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~--~~~~l~--~~~~~~gs~iivTtR~~~-v~~~~~~~~~~~ 298 (512)
.+....+ .....+-+|++|++.... ....+. .......+++|+++.... +..........+
T Consensus 91 ~~~~~~~--------------~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr~~~~ 156 (319)
T PRK00440 91 EFARTAP--------------VGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSRCAVF 156 (319)
T ss_pred HHHhcCC--------------CCCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHHhhee
Confidence 1110000 001235689999986432 222221 111134466777764332 111112234578
Q ss_pred ecCCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChhHHHHHH
Q 010355 299 LIGVLNESEARDLFKKLVGDKIENNDLKSLAMNIVKACRGLPIAIVTIA 347 (512)
Q Consensus 299 ~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~GlPLai~~ia 347 (512)
.+.+++.++...++...+...... --.+.+..|++.++|.+.-+...-
T Consensus 157 ~~~~l~~~ei~~~l~~~~~~~~~~-i~~~al~~l~~~~~gd~r~~~~~l 204 (319)
T PRK00440 157 RFSPLKKEAVAERLRYIAENEGIE-ITDDALEAIYYVSEGDMRKAINAL 204 (319)
T ss_pred eeCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 999999999999998877432211 113567889999999887644433
No 27
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.78 E-value=5e-08 Score=92.83 Aligned_cols=150 Identities=14% Similarity=0.221 Sum_probs=96.5
Q ss_pred ccccccchHHHH---HHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHH
Q 010355 148 YEAFESRMSTLN---DVINALKNPDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIADK 224 (512)
Q Consensus 148 ~~~~~gR~~~l~---~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~i~~~ 224 (512)
...+||....+. -|..++..+..+.+.+||++|+||||||+.++...+... ..||..+....-..-++.|+.+
T Consensus 137 L~dyvGQ~hlv~q~gllrs~ieq~~ipSmIlWGppG~GKTtlArlia~tsk~~S----yrfvelSAt~a~t~dvR~ife~ 212 (554)
T KOG2028|consen 137 LDDYVGQSHLVGQDGLLRSLIEQNRIPSMILWGPPGTGKTTLARLIASTSKKHS----YRFVELSATNAKTNDVRDIFEQ 212 (554)
T ss_pred HHHhcchhhhcCcchHHHHHHHcCCCCceEEecCCCCchHHHHHHHHhhcCCCc----eEEEEEeccccchHHHHHHHHH
Confidence 344555544332 244455577889999999999999999999998876432 5577777654444444444433
Q ss_pred hCCCCCCCCchHHHHHHHHHHhCCCeEEEEEeCCCChhhh-hhhCCCCCCCCeEEEE--EeCCcchh--ccccCCcccee
Q 010355 225 LGLKFYEESESGRARKLCERLKKEKKILVILDDIWTNLDL-ENVGIPFGVRGCRVLM--TARSQDVL--SSKMDCQNNFL 299 (512)
Q Consensus 225 l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~~-~~l~~~~~~~gs~iiv--TtR~~~v~--~~~~~~~~~~~ 299 (512)
-. . .....++|.+|++|.|...... +.+.+|.-.+|..++| ||-++... ........++.
T Consensus 213 aq-------------~--~~~l~krkTilFiDEiHRFNksQQD~fLP~VE~G~I~lIGATTENPSFqln~aLlSRC~Vfv 277 (554)
T KOG2028|consen 213 AQ-------------N--EKSLTKRKTILFIDEIHRFNKSQQDTFLPHVENGDITLIGATTENPSFQLNAALLSRCRVFV 277 (554)
T ss_pred HH-------------H--HHhhhcceeEEEeHHhhhhhhhhhhcccceeccCceEEEecccCCCccchhHHHHhccceeE
Confidence 21 1 1112358899999999754322 2233666677877666 55554321 12235567899
Q ss_pred cCCCCHHHHHHHHHHHh
Q 010355 300 IGVLNESEARDLFKKLV 316 (512)
Q Consensus 300 l~~L~~~ea~~Lf~~~~ 316 (512)
|++|+.+....++.+..
T Consensus 278 LekL~~n~v~~iL~rai 294 (554)
T KOG2028|consen 278 LEKLPVNAVVTILMRAI 294 (554)
T ss_pred eccCCHHHHHHHHHHHH
Confidence 99999999999988743
No 28
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.78 E-value=3.4e-08 Score=89.40 Aligned_cols=179 Identities=18% Similarity=0.176 Sum_probs=96.1
Q ss_pred cccCccccccchHHHHHHHHHhc-----CCCceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCCCHHHHH
Q 010355 144 SIKGYEAFESRMSTLNDVINALK-----NPDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQ 218 (512)
Q Consensus 144 ~~~~~~~~~gR~~~l~~l~~~L~-----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ll 218 (512)
.|.....|+|.+..+..+.-++. +.....+.+||++|+||||||.-+++..... | .+++.+.-....++
T Consensus 19 RP~~L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~--~---~~~sg~~i~k~~dl- 92 (233)
T PF05496_consen 19 RPKSLDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANELGVN--F---KITSGPAIEKAGDL- 92 (233)
T ss_dssp S-SSCCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHCT----E---EEEECCC--SCHHH-
T ss_pred CCCCHHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhccCCC--e---EeccchhhhhHHHH-
Confidence 35567889999988877654433 3457889999999999999999999988743 3 23332211111111
Q ss_pred HHHHHHhCCCCCCCCchHHHHHHHHHHhCCCeEEEEEeCCCChhh---------hhhhC--CCCC------------CCC
Q 010355 219 GQIADKLGLKFYEESESGRARKLCERLKKEKKILVILDDIWTNLD---------LENVG--IPFG------------VRG 275 (512)
Q Consensus 219 ~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~---------~~~l~--~~~~------------~~g 275 (512)
..+...+. ++-+|++|.+..... .+... ...+ .+-
T Consensus 93 --------------------~~il~~l~--~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~F 150 (233)
T PF05496_consen 93 --------------------AAILTNLK--EGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPF 150 (233)
T ss_dssp --------------------HHHHHT----TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----
T ss_pred --------------------HHHHHhcC--CCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCc
Confidence 11222222 456788898875421 11110 0001 123
Q ss_pred eEEEEEeCCcchhccccCCc-cceecCCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChhHHHHHHHHhc
Q 010355 276 CRVLMTARSQDVLSSKMDCQ-NNFLIGVLNESEARDLFKKLVGDKIENNDLKSLAMNIVKACRGLPIAIVTIARALR 351 (512)
Q Consensus 276 s~iivTtR~~~v~~~~~~~~-~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~GlPLai~~ia~~L~ 351 (512)
+.|=.|||...+........ .+.+|...+.++-..++.+.+..-.. +--.+.+..|++.|.|-|--..-+-..++
T Consensus 151 TligATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~i-~i~~~~~~~Ia~rsrGtPRiAnrll~rvr 226 (233)
T PF05496_consen 151 TLIGATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILNI-EIDEDAAEEIARRSRGTPRIANRLLRRVR 226 (233)
T ss_dssp EEEEEESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT--EE-HHHHHHHHHCTTTSHHHHHHHHHHHC
T ss_pred eEeeeeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhCC-CcCHHHHHHHHHhcCCChHHHHHHHHHHH
Confidence 44556888765542222333 34589999999999999877642221 22246789999999999987665555444
No 29
>PRK04195 replication factor C large subunit; Provisional
Probab=98.78 E-value=1.1e-07 Score=99.31 Aligned_cols=180 Identities=13% Similarity=0.091 Sum_probs=107.9
Q ss_pred ccCccccccchHHHHHHHHHhcC----CCceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCCCHHHHHHH
Q 010355 145 IKGYEAFESRMSTLNDVINALKN----PDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQ 220 (512)
Q Consensus 145 ~~~~~~~~gR~~~l~~l~~~L~~----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~ 220 (512)
|.....++|++..+..|..|+.. ...+.+.|+|++|+||||+|+.+++... |. ++-++++...+.. .+..
T Consensus 10 P~~l~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el~----~~-~ielnasd~r~~~-~i~~ 83 (482)
T PRK04195 10 PKTLSDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDYG----WE-VIELNASDQRTAD-VIER 83 (482)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHcC----CC-EEEEcccccccHH-HHHH
Confidence 45567789999999999988862 2268899999999999999999998864 32 3334444433322 2333
Q ss_pred HHHHhCCCCCCCCchHHHHHHHHHHhCCCeEEEEEeCCCChhh------hhhhCCCCCCCCeEEEEEeCCcchh-c-ccc
Q 010355 221 IADKLGLKFYEESESGRARKLCERLKKEKKILVILDDIWTNLD------LENVGIPFGVRGCRVLMTARSQDVL-S-SKM 292 (512)
Q Consensus 221 i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~------~~~l~~~~~~~gs~iivTtR~~~v~-~-~~~ 292 (512)
++....... .+...++.+||||+++.... +..+.......++.||+|+....-. . ...
T Consensus 84 ~i~~~~~~~--------------sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~~~~~iIli~n~~~~~~~k~Lr 149 (482)
T PRK04195 84 VAGEAATSG--------------SLFGARRKLILLDEVDGIHGNEDRGGARAILELIKKAKQPIILTANDPYDPSLRELR 149 (482)
T ss_pred HHHHhhccC--------------cccCCCCeEEEEecCcccccccchhHHHHHHHHHHcCCCCEEEeccCccccchhhHh
Confidence 322221100 01112578999999975421 2333111123345566666543211 1 112
Q ss_pred CCccceecCCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChhHHHH
Q 010355 293 DCQNNFLIGVLNESEARDLFKKLVGDKIENNDLKSLAMNIVKACRGLPIAIVT 345 (512)
Q Consensus 293 ~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~GlPLai~~ 345 (512)
.....+.+.+++..+....+.+.+......- -..+...|++.++|....+..
T Consensus 150 sr~~~I~f~~~~~~~i~~~L~~i~~~egi~i-~~eaL~~Ia~~s~GDlR~ain 201 (482)
T PRK04195 150 NACLMIEFKRLSTRSIVPVLKRICRKEGIEC-DDEALKEIAERSGGDLRSAIN 201 (482)
T ss_pred ccceEEEecCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHHHH
Confidence 3446789999999999999888764221111 134667788888776555443
No 30
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.77 E-value=2.6e-07 Score=92.81 Aligned_cols=181 Identities=11% Similarity=0.170 Sum_probs=108.7
Q ss_pred ccCccccccchHHHHHHHHHhcCCCc-eEEEEEcCCCCcHHHHHHHHHHhhhhcCCC-------------------CeEE
Q 010355 145 IKGYEAFESRMSTLNDVINALKNPDV-HMIGAYGMAGVGKTMLVKEVARQAKADKLF-------------------DEVV 204 (512)
Q Consensus 145 ~~~~~~~~gR~~~l~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f-------------------~~~~ 204 (512)
|.....++|.+..++.|...+..++. +.+.++|+.|+||||+|+.+++...-...+ ...+
T Consensus 12 P~~~~~iiGq~~~~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c~~~~~~~~~d~~ 91 (363)
T PRK14961 12 PQYFRDIIGQKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICKEIEKGLCLDLI 91 (363)
T ss_pred CCchhhccChHHHHHHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceE
Confidence 34456788999999999988886554 567899999999999999999876421101 1112
Q ss_pred EEEeCCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHh----CCCeEEEEEeCCCChh--hhhhhCCCC--CCCCe
Q 010355 205 YAEVSQRPDVKKIQGQIADKLGLKFYEESESGRARKLCERLK----KEKKILVILDDIWTNL--DLENVGIPF--GVRGC 276 (512)
Q Consensus 205 wv~~~~~~~~~~ll~~i~~~l~~~~~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~~--~~~~l~~~~--~~~gs 276 (512)
++..+..... ..+..+...+. .+++-++|+|++.... .++.+.-.+ +...+
T Consensus 92 ~~~~~~~~~v---------------------~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~ 150 (363)
T PRK14961 92 EIDAASRTKV---------------------EEMREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHI 150 (363)
T ss_pred EecccccCCH---------------------HHHHHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCe
Confidence 2221111111 12222322221 2355699999997553 233331111 13456
Q ss_pred EEEEEeCCcc-hhccccCCccceecCCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChhHHHHHH
Q 010355 277 RVLMTARSQD-VLSSKMDCQNNFLIGVLNESEARDLFKKLVGDKIENNDLKSLAMNIVKACRGLPIAIVTIA 347 (512)
Q Consensus 277 ~iivTtR~~~-v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~GlPLai~~ia 347 (512)
++|++|.+.. +.....+....+++.+++.++....+...+..... .--.+.+..|++.++|.|..+..+.
T Consensus 151 ~fIl~t~~~~~l~~tI~SRc~~~~~~~l~~~el~~~L~~~~~~~g~-~i~~~al~~ia~~s~G~~R~al~~l 221 (363)
T PRK14961 151 KFILATTDVEKIPKTILSRCLQFKLKIISEEKIFNFLKYILIKESI-DTDEYALKLIAYHAHGSMRDALNLL 221 (363)
T ss_pred EEEEEcCChHhhhHHHHhhceEEeCCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 6777665432 22222334468999999999999988876642211 1113467789999999886444333
No 31
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.76 E-value=2.7e-07 Score=90.96 Aligned_cols=175 Identities=15% Similarity=0.201 Sum_probs=110.7
Q ss_pred cccccchHHHHHHHHHhcCCC-ceEEEEEcCCCCcHHHHHHHHHHhhh----hcCCCCeEEEEEe-CCCCCHHHHHHHHH
Q 010355 149 EAFESRMSTLNDVINALKNPD-VHMIGAYGMAGVGKTMLVKEVARQAK----ADKLFDEVVYAEV-SQRPDVKKIQGQIA 222 (512)
Q Consensus 149 ~~~~gR~~~l~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~----~~~~f~~~~wv~~-~~~~~~~~ll~~i~ 222 (512)
..++|.+..++.|..++..+. .+.+.++|+.|+||||+|+.++...- ...|++...|... +......+ .+.+.
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~-ir~~~ 82 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDD-IRNII 82 (313)
T ss_pred hhccCcHHHHHHHHHHHHcCCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHH-HHHHH
Confidence 356788888899999988655 46778999999999999999998642 2245565555442 33334434 23333
Q ss_pred HHhCCCCCCCCchHHHHHHHHHHhCCCeEEEEEeCCC--ChhhhhhhC--CCCCCCCeEEEEEeCCcchh-ccccCCccc
Q 010355 223 DKLGLKFYEESESGRARKLCERLKKEKKILVILDDIW--TNLDLENVG--IPFGVRGCRVLMTARSQDVL-SSKMDCQNN 297 (512)
Q Consensus 223 ~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~--~~~~~~~l~--~~~~~~gs~iivTtR~~~v~-~~~~~~~~~ 297 (512)
..+...+. .+++-++|+|++. +...++.+. +.-+.+++.+|++|.+.... .........
T Consensus 83 ~~~~~~p~----------------~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~SRc~~ 146 (313)
T PRK05564 83 EEVNKKPY----------------EGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKSRCQI 146 (313)
T ss_pred HHHhcCcc----------------cCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHHhhcee
Confidence 33322111 1345566677664 444455442 11225678888888665432 222344578
Q ss_pred eecCCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChhHHHH
Q 010355 298 FLIGVLNESEARDLFKKLVGDKIENNDLKSLAMNIVKACRGLPIAIVT 345 (512)
Q Consensus 298 ~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~GlPLai~~ 345 (512)
+.+.+++.++...++.+.+.. .+ ...+..++..++|.|.-+..
T Consensus 147 ~~~~~~~~~~~~~~l~~~~~~--~~---~~~~~~l~~~~~g~~~~a~~ 189 (313)
T PRK05564 147 YKLNRLSKEEIEKFISYKYND--IK---EEEKKSAIAFSDGIPGKVEK 189 (313)
T ss_pred eeCCCcCHHHHHHHHHHHhcC--CC---HHHHHHHHHHcCCCHHHHHH
Confidence 999999999998888776531 11 23467889999999875543
No 32
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.76 E-value=1.4e-07 Score=98.19 Aligned_cols=180 Identities=11% Similarity=0.169 Sum_probs=111.5
Q ss_pred ccCccccccchHHHHHHHHHhcCCCc-eEEEEEcCCCCcHHHHHHHHHHhhhhcC------------------------C
Q 010355 145 IKGYEAFESRMSTLNDVINALKNPDV-HMIGAYGMAGVGKTMLVKEVARQAKADK------------------------L 199 (512)
Q Consensus 145 ~~~~~~~~gR~~~l~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~------------------------~ 199 (512)
|.....++|.+..++.|.+++..++. +.+.++|..|+||||+|+.+++...-.. .
T Consensus 12 PqtFddVIGQe~vv~~L~~al~~gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C~sC~~I~aG~ 91 (700)
T PRK12323 12 PRDFTTLVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQCRACTEIDAGR 91 (700)
T ss_pred CCcHHHHcCcHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCcccHHHHHHHcCC
Confidence 34556789999999999999987665 4568999999999999999988764210 0
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHh----CCCeEEEEEeCCCCh--hhhhhhCCCCC-
Q 010355 200 FDEVVYAEVSQRPDVKKIQGQIADKLGLKFYEESESGRARKLCERLK----KEKKILVILDDIWTN--LDLENVGIPFG- 272 (512)
Q Consensus 200 f~~~~wv~~~~~~~~~~ll~~i~~~l~~~~~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~--~~~~~l~~~~~- 272 (512)
|..+++++.....+ .+.+..+.+.+. .++.-++|||++... ..++.+.-.+.
T Consensus 92 hpDviEIdAas~~g---------------------VDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEE 150 (700)
T PRK12323 92 FVDYIEMDAASNRG---------------------VDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEE 150 (700)
T ss_pred CCcceEecccccCC---------------------HHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhcc
Confidence 11122222221111 122223333321 356679999999754 33444322221
Q ss_pred -CCCeEEEEEeCC-cchhccccCCccceecCCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChhHHHHH
Q 010355 273 -VRGCRVLMTARS-QDVLSSKMDCQNNFLIGVLNESEARDLFKKLVGDKIENNDLKSLAMNIVKACRGLPIAIVTI 346 (512)
Q Consensus 273 -~~gs~iivTtR~-~~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~GlPLai~~i 346 (512)
..++++|++|.+ ..+.....+....+.+.+++.++..+.+.+.+....... -.+....|++.++|.|.-...+
T Consensus 151 PP~~v~FILaTtep~kLlpTIrSRCq~f~f~~ls~eei~~~L~~Il~~Egi~~-d~eAL~~IA~~A~Gs~RdALsL 225 (700)
T PRK12323 151 PPEHVKFILATTDPQKIPVTVLSRCLQFNLKQMPPGHIVSHLDAILGEEGIAH-EVNALRLLAQAAQGSMRDALSL 225 (700)
T ss_pred CCCCceEEEEeCChHhhhhHHHHHHHhcccCCCChHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHHHHH
Confidence 345565555544 444333344557899999999999999888764322111 1345678999999999755444
No 33
>PLN03025 replication factor C subunit; Provisional
Probab=98.73 E-value=4.4e-07 Score=89.65 Aligned_cols=184 Identities=11% Similarity=0.093 Sum_probs=109.1
Q ss_pred ccCccccccchHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCC-eEEEEEeCCCCCHHHHHHHHHH
Q 010355 145 IKGYEAFESRMSTLNDVINALKNPDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFD-EVVYAEVSQRPDVKKIQGQIAD 223 (512)
Q Consensus 145 ~~~~~~~~gR~~~l~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~-~~~wv~~~~~~~~~~ll~~i~~ 223 (512)
|.....++|....+..|..++..++.+.+.++|++|+||||+|..+++..... .|. .++-++.+...+.. .++.++.
T Consensus 9 P~~l~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~-~~~~~~~eln~sd~~~~~-~vr~~i~ 86 (319)
T PLN03025 9 PTKLDDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLGP-NYKEAVLELNASDDRGID-VVRNKIK 86 (319)
T ss_pred CCCHHHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHhcc-cCccceeeecccccccHH-HHHHHHH
Confidence 44566788999988888888887777778899999999999999999876321 222 22223333322222 2222222
Q ss_pred HhCCCCCCCCchHHHHHHHHHHhCCCeEEEEEeCCCChh--hhhhhC--CCCCCCCeEEEEEeCCcc-hhccccCCccce
Q 010355 224 KLGLKFYEESESGRARKLCERLKKEKKILVILDDIWTNL--DLENVG--IPFGVRGCRVLMTARSQD-VLSSKMDCQNNF 298 (512)
Q Consensus 224 ~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~--~~~~l~--~~~~~~gs~iivTtR~~~-v~~~~~~~~~~~ 298 (512)
.+..... .+..++.-++|||++.... ....+. .-.....+++|+++.... +..........+
T Consensus 87 ~~~~~~~-------------~~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc~~i 153 (319)
T PLN03025 87 MFAQKKV-------------TLPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIV 153 (319)
T ss_pred HHHhccc-------------cCCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhhhcc
Confidence 2110000 0012356799999997542 222221 111134567777765432 211112234689
Q ss_pred ecCCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChhHHH
Q 010355 299 LIGVLNESEARDLFKKLVGDKIENNDLKSLAMNIVKACRGLPIAIV 344 (512)
Q Consensus 299 ~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~GlPLai~ 344 (512)
++.+++.++....+...+......- -.+....|+..++|..-.+.
T Consensus 154 ~f~~l~~~~l~~~L~~i~~~egi~i-~~~~l~~i~~~~~gDlR~al 198 (319)
T PLN03025 154 RFSRLSDQEILGRLMKVVEAEKVPY-VPEGLEAIIFTADGDMRQAL 198 (319)
T ss_pred cCCCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHHH
Confidence 9999999999999988774322111 13567889999998765443
No 34
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.71 E-value=8e-07 Score=88.18 Aligned_cols=195 Identities=13% Similarity=0.104 Sum_probs=114.1
Q ss_pred ccCccccccchHHHHHHHHHhcCCCc-eEEEEEcCCCCcHHHHHHHHHHhhhhcCC--CCeEEEEEeCCCCCHHHHHHHH
Q 010355 145 IKGYEAFESRMSTLNDVINALKNPDV-HMIGAYGMAGVGKTMLVKEVARQAKADKL--FDEVVYAEVSQRPDVKKIQGQI 221 (512)
Q Consensus 145 ~~~~~~~~gR~~~l~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~--f~~~~wv~~~~~~~~~~ll~~i 221 (512)
|.....++|.......|...+..+.. +.+.|+|+.|+||||||..+++..--... +... .....+......+.+
T Consensus 19 P~~~~~l~Gh~~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~---~~~~~~~~c~~c~~i 95 (351)
T PRK09112 19 PSENTRLFGHEEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPE---TLADPDPASPVWRQI 95 (351)
T ss_pred CCchhhccCcHHHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCcc---ccCCCCCCCHHHHHH
Confidence 45566789999999999999886654 56999999999999999999987642110 1111 001111111122333
Q ss_pred HHH-------hCCCCCC-------CCchHHHHHHHHHHh----CCCeEEEEEeCCCCh--hhhhh----hCCCCCCCCeE
Q 010355 222 ADK-------LGLKFYE-------ESESGRARKLCERLK----KEKKILVILDDIWTN--LDLEN----VGIPFGVRGCR 277 (512)
Q Consensus 222 ~~~-------l~~~~~~-------~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~--~~~~~----l~~~~~~~gs~ 277 (512)
... +..+... .-..+.+..+.+++. .+++-++|||++... ...+. +..| ..++.
T Consensus 96 ~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEp--p~~~~ 173 (351)
T PRK09112 96 AQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEP--PARAL 173 (351)
T ss_pred HcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcC--CCCce
Confidence 221 1001000 011233445555554 356779999999743 22222 2222 23444
Q ss_pred E-EEEeCCcchhccccCCccceecCCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChhHHHHHH
Q 010355 278 V-LMTARSQDVLSSKMDCQNNFLIGVLNESEARDLFKKLVGDKIENNDLKSLAMNIVKACRGLPIAIVTIA 347 (512)
Q Consensus 278 i-ivTtR~~~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~GlPLai~~ia 347 (512)
+ ++|++...+.....+....+.+.|++.++...++.+...... -..+.+..|++.++|.|.....+.
T Consensus 174 fiLit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~~~---~~~~~~~~i~~~s~G~pr~Al~ll 241 (351)
T PRK09112 174 FILISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSSQG---SDGEITEALLQRSKGSVRKALLLL 241 (351)
T ss_pred EEEEECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhcccC---CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 4 444444333332334457999999999999999988532211 113456789999999998765444
No 35
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.71 E-value=1.8e-07 Score=80.84 Aligned_cols=121 Identities=19% Similarity=0.160 Sum_probs=73.2
Q ss_pred ccchHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCC
Q 010355 152 ESRMSTLNDVINALKNPDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIADKLGLKFYE 231 (512)
Q Consensus 152 ~gR~~~l~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~i~~~l~~~~~~ 231 (512)
.||+..+..+...+.....+.+.|+|++|+|||+|++.+++.... .-..++++..............+...
T Consensus 1 ~~~~~~~~~i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~------- 71 (151)
T cd00009 1 VGQEEAIEALREALELPPPKNLLLYGPPGTGKTTLARAIANELFR--PGAPFLYLNASDLLEGLVVAELFGHF------- 71 (151)
T ss_pred CchHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHhhc--CCCCeEEEehhhhhhhhHHHHHhhhh-------
Confidence 378888999998888766788999999999999999999998752 12456667665443322211111000
Q ss_pred CCchHHHHHHHHHHhCCCeEEEEEeCCCCh-----hhhhh-hCCCCC----CCCeEEEEEeCCcc
Q 010355 232 ESESGRARKLCERLKKEKKILVILDDIWTN-----LDLEN-VGIPFG----VRGCRVLMTARSQD 286 (512)
Q Consensus 232 ~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~-----~~~~~-l~~~~~----~~gs~iivTtR~~~ 286 (512)
............++.+||+|+++.. ..+.. +..... ..+..||+||....
T Consensus 72 -----~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 -----LVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred -----hHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 0001111112246789999999853 11222 111111 35788888888653
No 36
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.71 E-value=4.1e-07 Score=94.49 Aligned_cols=193 Identities=12% Similarity=0.095 Sum_probs=109.0
Q ss_pred ccCccccccchHHHHHHHHHhcCCCc-eEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCCCHHHHHH---H
Q 010355 145 IKGYEAFESRMSTLNDVINALKNPDV-HMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQG---Q 220 (512)
Q Consensus 145 ~~~~~~~~gR~~~l~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ll~---~ 220 (512)
|.....++|.+..+..|..++..+.. +.+.++|++|+||||+|+.+++...-...+...+|.+.+. ..+.. .
T Consensus 10 P~~~~dvvGq~~v~~~L~~~i~~~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc----~~i~~~~h~ 85 (504)
T PRK14963 10 PITFDEVVGQEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESC----LAVRRGAHP 85 (504)
T ss_pred CCCHHHhcChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhh----HHHhcCCCC
Confidence 34556789999999999888886655 4569999999999999999998764222121122221100 00000 0
Q ss_pred HHHHhCCCCCCCCchHHHHHHHHHHh----CCCeEEEEEeCCCCh--hhhhhhCCCCC--CCCeEEEEEeCC-cchhccc
Q 010355 221 IADKLGLKFYEESESGRARKLCERLK----KEKKILVILDDIWTN--LDLENVGIPFG--VRGCRVLMTARS-QDVLSSK 291 (512)
Q Consensus 221 i~~~l~~~~~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~--~~~~~l~~~~~--~~gs~iivTtR~-~~v~~~~ 291 (512)
-+..+.. ........+..+.+.+. .+++-+||||+++.. ..+..+...+. ..++.+|++|.. ..+....
T Consensus 86 dv~el~~--~~~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~~I 163 (504)
T PRK14963 86 DVLEIDA--ASNNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPTI 163 (504)
T ss_pred ceEEecc--cccCCHHHHHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCChHH
Confidence 0000000 00011112222322221 245679999999754 23443322111 345555555543 3332222
Q ss_pred cCCccceecCCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChhHHH
Q 010355 292 MDCQNNFLIGVLNESEARDLFKKLVGDKIENNDLKSLAMNIVKACRGLPIAIV 344 (512)
Q Consensus 292 ~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~GlPLai~ 344 (512)
......+.+.+++.++...++.+.+......- -.+.+..|++.++|.+--+.
T Consensus 164 ~SRc~~~~f~~ls~~el~~~L~~i~~~egi~i-~~~Al~~ia~~s~GdlR~al 215 (504)
T PRK14963 164 LSRTQHFRFRRLTEEEIAGKLRRLLEAEGREA-EPEALQLVARLADGAMRDAE 215 (504)
T ss_pred hcceEEEEecCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHHH
Confidence 34456899999999999999998774222111 23567889999999886553
No 37
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.70 E-value=4.7e-07 Score=93.66 Aligned_cols=179 Identities=12% Similarity=0.150 Sum_probs=108.3
Q ss_pred ccCccccccchHHHHHHHHHhcCCC-ceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCC----------------------
Q 010355 145 IKGYEAFESRMSTLNDVINALKNPD-VHMIGAYGMAGVGKTMLVKEVARQAKADKLFD---------------------- 201 (512)
Q Consensus 145 ~~~~~~~~gR~~~l~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~---------------------- 201 (512)
|.....++|.+..+..|...+..++ .+.+.++|+.|+||||+|+.+++...-.....
T Consensus 17 P~~f~dliGq~~vv~~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C~~C~~i~~~~h 96 (507)
T PRK06645 17 PSNFAELQGQEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQCTNCISFNNHNH 96 (507)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCChHHHHHhcCCC
Confidence 3445678899999998888777554 46889999999999999999998764211100
Q ss_pred -eEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHh----CCCeEEEEEeCCCCh--hhhhhhCCCC--C
Q 010355 202 -EVVYAEVSQRPDVKKIQGQIADKLGLKFYEESESGRARKLCERLK----KEKKILVILDDIWTN--LDLENVGIPF--G 272 (512)
Q Consensus 202 -~~~wv~~~~~~~~~~ll~~i~~~l~~~~~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~--~~~~~l~~~~--~ 272 (512)
.++.++.....+. ..+..+.+... .+++-++|+|+++.. ..++.+...+ +
T Consensus 97 ~Dv~eidaas~~~v---------------------d~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEep 155 (507)
T PRK06645 97 PDIIEIDAASKTSV---------------------DDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEP 155 (507)
T ss_pred CcEEEeeccCCCCH---------------------HHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhc
Confidence 1112222111111 12222222221 246678999999864 3344442111 1
Q ss_pred CCCeEEEEEe-CCcchhccccCCccceecCCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChhHHHH
Q 010355 273 VRGCRVLMTA-RSQDVLSSKMDCQNNFLIGVLNESEARDLFKKLVGDKIENNDLKSLAMNIVKACRGLPIAIVT 345 (512)
Q Consensus 273 ~~gs~iivTt-R~~~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~GlPLai~~ 345 (512)
.+.+.+|++| +...+..........+.+.+++.++....+.+.+......- -.+....|++.++|.+.-+..
T Consensus 156 p~~~vfI~aTte~~kI~~tI~SRc~~~ef~~ls~~el~~~L~~i~~~egi~i-e~eAL~~Ia~~s~GslR~al~ 228 (507)
T PRK06645 156 PPHIIFIFATTEVQKIPATIISRCQRYDLRRLSFEEIFKLLEYITKQENLKT-DIEALRIIAYKSEGSARDAVS 228 (507)
T ss_pred CCCEEEEEEeCChHHhhHHHHhcceEEEccCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHHHH
Confidence 3456665544 44444322233446799999999999999998875322211 134667899999998754433
No 38
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.70 E-value=4.7e-07 Score=94.64 Aligned_cols=179 Identities=12% Similarity=0.184 Sum_probs=109.7
Q ss_pred ccCccccccchHHHHHHHHHhcCCC-ceEEEEEcCCCCcHHHHHHHHHHhhhhcC-------------------CCCeEE
Q 010355 145 IKGYEAFESRMSTLNDVINALKNPD-VHMIGAYGMAGVGKTMLVKEVARQAKADK-------------------LFDEVV 204 (512)
Q Consensus 145 ~~~~~~~~gR~~~l~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-------------------~f~~~~ 204 (512)
|.....++|.+.....|..++..++ .+.+.++|+.|+||||+|+.+++...-.. .|..++
T Consensus 11 PktFddVIGQe~vv~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I~~g~hpDvi 90 (702)
T PRK14960 11 PRNFNELVGQNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAVNEGRFIDLI 90 (702)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHHhcCCCCceE
Confidence 4456678999999999999998665 46779999999999999999988753211 011122
Q ss_pred EEEeCCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHH----hCCCeEEEEEeCCCCh--hhhhhhCCCC--CCCCe
Q 010355 205 YAEVSQRPDVKKIQGQIADKLGLKFYEESESGRARKLCERL----KKEKKILVILDDIWTN--LDLENVGIPF--GVRGC 276 (512)
Q Consensus 205 wv~~~~~~~~~~ll~~i~~~l~~~~~~~~~~~~~~~l~~~l----~~~k~~LlVlDdv~~~--~~~~~l~~~~--~~~gs 276 (512)
.++.+..... ..+..+.... ..+++-++|||++... ...+.+.-.+ +..++
T Consensus 91 EIDAAs~~~V---------------------ddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v 149 (702)
T PRK14960 91 EIDAASRTKV---------------------EDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHV 149 (702)
T ss_pred EecccccCCH---------------------HHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCc
Confidence 2222211111 1222222222 1246679999999754 2333331111 13456
Q ss_pred EEEEEeCCcc-hhccccCCccceecCCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChhHHHH
Q 010355 277 RVLMTARSQD-VLSSKMDCQNNFLIGVLNESEARDLFKKLVGDKIENNDLKSLAMNIVKACRGLPIAIVT 345 (512)
Q Consensus 277 ~iivTtR~~~-v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~GlPLai~~ 345 (512)
++|++|.... +..........+.+.+|+.++....+.+.+...... --......|++.++|.+..+..
T Consensus 150 ~FILaTtd~~kIp~TIlSRCq~feFkpLs~eEI~k~L~~Il~kEgI~-id~eAL~~IA~~S~GdLRdALn 218 (702)
T PRK14960 150 KFLFATTDPQKLPITVISRCLQFTLRPLAVDEITKHLGAILEKEQIA-ADQDAIWQIAESAQGSLRDALS 218 (702)
T ss_pred EEEEEECChHhhhHHHHHhhheeeccCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHH
Confidence 7777776533 222223455789999999999999998877532211 1134667888999997754443
No 39
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.68 E-value=3.5e-07 Score=98.64 Aligned_cols=174 Identities=20% Similarity=0.271 Sum_probs=100.8
Q ss_pred ccCccccccchHHHH---HHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCCCHHHHHHHH
Q 010355 145 IKGYEAFESRMSTLN---DVINALKNPDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQI 221 (512)
Q Consensus 145 ~~~~~~~~gR~~~l~---~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~i 221 (512)
|.....|+|++..+. .|...+.....+.+.|+|++|+||||||+.+++... ..|. .++... .....+ +.+
T Consensus 24 P~tldd~vGQe~ii~~~~~L~~~i~~~~~~slLL~GPpGtGKTTLA~aIA~~~~--~~f~---~lna~~-~~i~di-r~~ 96 (725)
T PRK13341 24 PRTLEEFVGQDHILGEGRLLRRAIKADRVGSLILYGPPGVGKTTLARIIANHTR--AHFS---SLNAVL-AGVKDL-RAE 96 (725)
T ss_pred CCcHHHhcCcHHHhhhhHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHhc--Ccce---eehhhh-hhhHHH-HHH
Confidence 445567899988774 466667777778889999999999999999998764 2331 111110 011111 111
Q ss_pred HHHhCCCCCCCCchHHHHHHHHHHh-CCCeEEEEEeCCCCh--hhhhhhCCCCCCCCeEEEEEeC--Ccc--hhccccCC
Q 010355 222 ADKLGLKFYEESESGRARKLCERLK-KEKKILVILDDIWTN--LDLENVGIPFGVRGCRVLMTAR--SQD--VLSSKMDC 294 (512)
Q Consensus 222 ~~~l~~~~~~~~~~~~~~~l~~~l~-~~k~~LlVlDdv~~~--~~~~~l~~~~~~~gs~iivTtR--~~~--v~~~~~~~ 294 (512)
+......+. .+++.+||||+++.. .....+. +....++.++|+++ +.. +.......
T Consensus 97 ----------------i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL-~~lE~g~IiLI~aTTenp~~~l~~aL~SR 159 (725)
T PRK13341 97 ----------------VDRAKERLERHGKRTILFIDEVHRFNKAQQDALL-PWVENGTITLIGATTENPYFEVNKALVSR 159 (725)
T ss_pred ----------------HHHHHHHhhhcCCceEEEEeChhhCCHHHHHHHH-HHhcCceEEEEEecCCChHhhhhhHhhcc
Confidence 111111121 135689999999754 3333342 22234555555433 321 11111223
Q ss_pred ccceecCCCCHHHHHHHHHHHhCC------CCCCchhHHHHHHHHHHcCCChhH
Q 010355 295 QNNFLIGVLNESEARDLFKKLVGD------KIENNDLKSLAMNIVKACRGLPIA 342 (512)
Q Consensus 295 ~~~~~l~~L~~~ea~~Lf~~~~~~------~~~~~~~~~~~~~I~~~~~GlPLa 342 (512)
...+.+++|+.++...++.+.+.. .....--.+....|++.+.|..-.
T Consensus 160 ~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD~R~ 213 (725)
T PRK13341 160 SRLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGDARS 213 (725)
T ss_pred ccceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCCHHH
Confidence 467999999999999999876631 111111245667888888886543
No 40
>PF14516 AAA_35: AAA-like domain
Probab=98.68 E-value=3.3e-06 Score=83.62 Aligned_cols=201 Identities=14% Similarity=0.119 Sum_probs=122.0
Q ss_pred ccCccccccchHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCC-----CCHHHHHH
Q 010355 145 IKGYEAFESRMSTLNDVINALKNPDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQR-----PDVKKIQG 219 (512)
Q Consensus 145 ~~~~~~~~gR~~~l~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-----~~~~~ll~ 219 (512)
+...+-.++|...-+.+.+.+.+. ...+.|.|+-.+|||+|..++.+..... -..++++++..- .+...+++
T Consensus 7 ~~~~~~Yi~R~~~e~~~~~~i~~~-G~~~~I~apRq~GKTSll~~l~~~l~~~--~~~~v~id~~~~~~~~~~~~~~f~~ 83 (331)
T PF14516_consen 7 PLDSPFYIERPPAEQECYQEIVQP-GSYIRIKAPRQMGKTSLLLRLLERLQQQ--GYRCVYIDLQQLGSAIFSDLEQFLR 83 (331)
T ss_pred CCCCCcccCchHHHHHHHHHHhcC-CCEEEEECcccCCHHHHHHHHHHHHHHC--CCEEEEEEeecCCCcccCCHHHHHH
Confidence 345556778986777777777753 3688999999999999999999888753 234557776542 24555555
Q ss_pred HHH----HHhCCCCCC--------CCchHHHHHHHHHHh--CCCeEEEEEeCCCChhh--------hhhhC------CCC
Q 010355 220 QIA----DKLGLKFYE--------ESESGRARKLCERLK--KEKKILVILDDIWTNLD--------LENVG------IPF 271 (512)
Q Consensus 220 ~i~----~~l~~~~~~--------~~~~~~~~~l~~~l~--~~k~~LlVlDdv~~~~~--------~~~l~------~~~ 271 (512)
.++ ++|++...- .+.......+.+.+. .+++++|+||+++.... +..++ ...
T Consensus 84 ~~~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~~~ 163 (331)
T PF14516_consen 84 WFCEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRKNN 163 (331)
T ss_pred HHHHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhcccC
Confidence 554 445443210 011112222333332 25899999999964321 11111 111
Q ss_pred CCCCeEEEEEeCCc--chh----ccccCCccceecCCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChhHHHH
Q 010355 272 GVRGCRVLMTARSQ--DVL----SSKMDCQNNFLIGVLNESEARDLFKKLVGDKIENNDLKSLAMNIVKACRGLPIAIVT 345 (512)
Q Consensus 272 ~~~gs~iivTtR~~--~v~----~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~GlPLai~~ 345 (512)
+....-.++..... ... .........+.|++|+.+++..|+.++-.. .. ....+.|...+||+|.-+..
T Consensus 164 ~~~~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~--~~---~~~~~~l~~~tgGhP~Lv~~ 238 (331)
T PF14516_consen 164 PIWQKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLE--FS---QEQLEQLMDWTGGHPYLVQK 238 (331)
T ss_pred cccceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhcc--CC---HHHHHHHHHHHCCCHHHHHH
Confidence 11111122222211 111 122334468999999999999998876432 11 22388999999999999999
Q ss_pred HHHHhccC
Q 010355 346 IARALRNK 353 (512)
Q Consensus 346 ia~~L~~~ 353 (512)
++..+...
T Consensus 239 ~~~~l~~~ 246 (331)
T PF14516_consen 239 ACYLLVEE 246 (331)
T ss_pred HHHHHHHc
Confidence 99999754
No 41
>PF13173 AAA_14: AAA domain
Probab=98.66 E-value=7.1e-08 Score=81.76 Aligned_cols=119 Identities=22% Similarity=0.201 Sum_probs=75.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHhCCC
Q 010355 170 VHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIADKLGLKFYEESESGRARKLCERLKKEK 249 (512)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k 249 (512)
.+++.|.|+.|+|||||+++++.... ....++|++............. ....+.+... .+
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~---~~~~~~yi~~~~~~~~~~~~~~----------------~~~~~~~~~~-~~ 61 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLL---PPENILYINFDDPRDRRLADPD----------------LLEYFLELIK-PG 61 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc---ccccceeeccCCHHHHHHhhhh----------------hHHHHHHhhc-cC
Confidence 47899999999999999999998765 2345677766543221100000 1122222222 36
Q ss_pred eEEEEEeCCCChhhhhhhCCCCC--CCCeEEEEEeCCcchhc-----cccCCccceecCCCCHHHH
Q 010355 250 KILVILDDIWTNLDLENVGIPFG--VRGCRVLMTARSQDVLS-----SKMDCQNNFLIGVLNESEA 308 (512)
Q Consensus 250 ~~LlVlDdv~~~~~~~~l~~~~~--~~gs~iivTtR~~~v~~-----~~~~~~~~~~l~~L~~~ea 308 (512)
+.+|+||++.....|......+. .+..+|++|+....... ...+....++|.||+..|.
T Consensus 62 ~~~i~iDEiq~~~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 62 KKYIFIDEIQYLPDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred CcEEEEehhhhhccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 78999999988777765422222 34689999998765541 2234456789999998763
No 42
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.66 E-value=8.2e-07 Score=91.52 Aligned_cols=188 Identities=15% Similarity=0.184 Sum_probs=108.7
Q ss_pred ccCccccccchHHHHHHHHHhcCCCc-eEEEEEcCCCCcHHHHHHHHHHhhhhcCC-------------------CCeEE
Q 010355 145 IKGYEAFESRMSTLNDVINALKNPDV-HMIGAYGMAGVGKTMLVKEVARQAKADKL-------------------FDEVV 204 (512)
Q Consensus 145 ~~~~~~~~gR~~~l~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-------------------f~~~~ 204 (512)
|.....++|.+.....|...+..+.. +.+.++|++|+||||+|+.+++....... +..++
T Consensus 10 P~~~~divGq~~i~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv~ 89 (472)
T PRK14962 10 PKTFSEVVGQDHVKKLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDVI 89 (472)
T ss_pred CCCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCccE
Confidence 44566789999888888888876665 55899999999999999999887542110 01122
Q ss_pred EEEeCCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHhCCCeEEEEEeCCCCh--hhhhhhCCCCC--CCCeEEEE
Q 010355 205 YAEVSQRPDVKKIQGQIADKLGLKFYEESESGRARKLCERLKKEKKILVILDDIWTN--LDLENVGIPFG--VRGCRVLM 280 (512)
Q Consensus 205 wv~~~~~~~~~~ll~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~--~~~~~l~~~~~--~~gs~iiv 280 (512)
.++.+...+...+ +.|...+.. .-..+++-+||+|++... .....+...+. ...+.+|+
T Consensus 90 el~aa~~~gid~i-R~i~~~~~~----------------~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~Il 152 (472)
T PRK14962 90 ELDAASNRGIDEI-RKIRDAVGY----------------RPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFVL 152 (472)
T ss_pred EEeCcccCCHHHH-HHHHHHHhh----------------ChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEEEE
Confidence 2333222222221 122221110 001245679999999754 22333311111 23455554
Q ss_pred EeCC-cchhccccCCccceecCCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCC-ChhHHHHHHHHh
Q 010355 281 TARS-QDVLSSKMDCQNNFLIGVLNESEARDLFKKLVGDKIENNDLKSLAMNIVKACRG-LPIAIVTIARAL 350 (512)
Q Consensus 281 TtR~-~~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~G-lPLai~~ia~~L 350 (512)
+|.+ ..+..........+.+.+++.++....+.+.+..... .--.+....|++.++| ++.++..+-.+.
T Consensus 153 attn~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi-~i~~eal~~Ia~~s~GdlR~aln~Le~l~ 223 (472)
T PRK14962 153 ATTNLEKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEGI-EIDREALSFIAKRASGGLRDALTMLEQVW 223 (472)
T ss_pred EeCChHhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 5443 2332223344568999999999999998887742211 1113567788887755 467777766543
No 43
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.66 E-value=1.1e-06 Score=87.61 Aligned_cols=194 Identities=13% Similarity=0.049 Sum_probs=112.3
Q ss_pred ccCccccccchHHHHHHHHHhcCCCc-eEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeE------EEEEeCCCCCHHHH
Q 010355 145 IKGYEAFESRMSTLNDVINALKNPDV-HMIGAYGMAGVGKTMLVKEVARQAKADKLFDEV------VYAEVSQRPDVKKI 217 (512)
Q Consensus 145 ~~~~~~~~gR~~~l~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~------~wv~~~~~~~~~~l 217 (512)
|.....++|.+.....|.+.+..++. +.+.++|+.|+||+|+|..+++..--....... .-+.+...+ ..
T Consensus 15 P~~~~~iiGq~~~~~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c---~~ 91 (365)
T PRK07471 15 PRETTALFGHAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDH---PV 91 (365)
T ss_pred CCchhhccChHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCC---hH
Confidence 44566789999999999999887664 468999999999999999998876321110000 000000011 11
Q ss_pred HHHHHHHhCCC------C--CC-------CCchHHHHHHHHHHh----CCCeEEEEEeCCCCh--hhhhhhCCCC--CCC
Q 010355 218 QGQIADKLGLK------F--YE-------ESESGRARKLCERLK----KEKKILVILDDIWTN--LDLENVGIPF--GVR 274 (512)
Q Consensus 218 l~~i~~~l~~~------~--~~-------~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~--~~~~~l~~~~--~~~ 274 (512)
.+.|.. ...+ . .. .-..+.+..+.+.+. .+++.++|||++... ...+.+...+ +..
T Consensus 92 c~~i~~-~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEepp~ 170 (365)
T PRK07471 92 ARRIAA-GAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEPPA 170 (365)
T ss_pred HHHHHc-cCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcCCC
Confidence 111110 0000 0 00 001223444444443 356779999999643 3333331111 134
Q ss_pred CeEEEEEeCCcc-hhccccCCccceecCCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChhHHHHHH
Q 010355 275 GCRVLMTARSQD-VLSSKMDCQNNFLIGVLNESEARDLFKKLVGDKIENNDLKSLAMNIVKACRGLPIAIVTIA 347 (512)
Q Consensus 275 gs~iivTtR~~~-v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~GlPLai~~ia 347 (512)
++.+|++|.+.. +..........+.+.+++.++..+++.+...... ......+++.++|.|+....+.
T Consensus 171 ~~~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~~~-----~~~~~~l~~~s~Gsp~~Al~ll 239 (365)
T PRK07471 171 RSLFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPDLP-----DDPRAALAALAEGSVGRALRLA 239 (365)
T ss_pred CeEEEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhcccCC-----HHHHHHHHHHcCCCHHHHHHHh
Confidence 566777776653 3233344557899999999999999988653211 1223678999999998665543
No 44
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.66 E-value=3.5e-07 Score=92.90 Aligned_cols=197 Identities=14% Similarity=0.147 Sum_probs=111.3
Q ss_pred ccCccccccchHHHHHHHHHhcCCCc-eEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCCCHHHHHHHHHH
Q 010355 145 IKGYEAFESRMSTLNDVINALKNPDV-HMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIAD 223 (512)
Q Consensus 145 ~~~~~~~~gR~~~l~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~i~~ 223 (512)
|.....++|.+..+..|..++..++. +.+.++|+.|+||||+|+.+++...-..... ...+....+...+...+..
T Consensus 14 P~~f~dvVGQe~iv~~L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~---~~pCg~C~sC~~i~~g~~~ 90 (484)
T PRK14956 14 PQFFRDVIHQDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLNCENPIG---NEPCNECTSCLEITKGISS 90 (484)
T ss_pred CCCHHHHhChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhcCcccccC---ccccCCCcHHHHHHccCCc
Confidence 44566789999999999999887765 4689999999999999999998764211100 0011111111111111100
Q ss_pred HhC-CCCCCCCchHHHHHHHHHHh----CCCeEEEEEeCCCCh--hhhhhhCCCCC--CCCeEEEEEeC-CcchhccccC
Q 010355 224 KLG-LKFYEESESGRARKLCERLK----KEKKILVILDDIWTN--LDLENVGIPFG--VRGCRVLMTAR-SQDVLSSKMD 293 (512)
Q Consensus 224 ~l~-~~~~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~--~~~~~l~~~~~--~~gs~iivTtR-~~~v~~~~~~ 293 (512)
.+. +..........+..+.+.+. .++.-++|||++... ..++.+...+. ...+.+|++|. ...+......
T Consensus 91 dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~~TI~S 170 (484)
T PRK14956 91 DVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIPETILS 170 (484)
T ss_pred cceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhccHHHHh
Confidence 000 00000111122233333332 356679999999754 34444422212 24555554444 3434333334
Q ss_pred CccceecCCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChhHHHH
Q 010355 294 CQNNFLIGVLNESEARDLFKKLVGDKIENNDLKSLAMNIVKACRGLPIAIVT 345 (512)
Q Consensus 294 ~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~GlPLai~~ 345 (512)
....|.+.+++.++....+.+.+...... --.+....|++.++|.|.-+..
T Consensus 171 RCq~~~f~~ls~~~i~~~L~~i~~~Egi~-~e~eAL~~Ia~~S~Gd~RdAL~ 221 (484)
T PRK14956 171 RCQDFIFKKVPLSVLQDYSEKLCKIENVQ-YDQEGLFWIAKKGDGSVRDMLS 221 (484)
T ss_pred hhheeeecCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCChHHHHHH
Confidence 45679999999999999888876432211 1235678899999999854433
No 45
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.65 E-value=8.7e-08 Score=86.75 Aligned_cols=48 Identities=19% Similarity=0.270 Sum_probs=34.7
Q ss_pred ccccchHHHHHHHHHhc---CCCceEEEEEcCCCCcHHHHHHHHHHhhhhc
Q 010355 150 AFESRMSTLNDVINALK---NPDVHMIGAYGMAGVGKTMLVKEVARQAKAD 197 (512)
Q Consensus 150 ~~~gR~~~l~~l~~~L~---~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~ 197 (512)
.|+||+.++++|...|. ....+++.|+|.+|+|||+|+++++......
T Consensus 1 ~fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp --TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 48999999999999993 4557999999999999999999999988765
No 46
>PRK08727 hypothetical protein; Validated
Probab=98.65 E-value=4.7e-07 Score=85.07 Aligned_cols=170 Identities=17% Similarity=0.154 Sum_probs=100.1
Q ss_pred ccccccch-HHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhC
Q 010355 148 YEAFESRM-STLNDVINALKNPDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIADKLG 226 (512)
Q Consensus 148 ~~~~~gR~-~~l~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~i~~~l~ 226 (512)
...|++.. ..+..+...........+.|+|.+|+|||+|++.+++..... ...++|+++.. ....+
T Consensus 18 f~~f~~~~~n~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~a~~~~~~~~--~~~~~y~~~~~------~~~~~----- 84 (233)
T PRK08727 18 FDSYIAAPDGLLAQLQALAAGQSSDWLYLSGPAGTGKTHLALALCAAAEQA--GRSSAYLPLQA------AAGRL----- 84 (233)
T ss_pred hhhccCCcHHHHHHHHHHHhccCCCeEEEECCCCCCHHHHHHHHHHHHHHc--CCcEEEEeHHH------hhhhH-----
Confidence 34455433 334443333333344679999999999999999999886643 34566765422 11111
Q ss_pred CCCCCCCchHHHHHHHHHHhCCCeEEEEEeCCCChh---hhhhhCCCC----CCCCeEEEEEeCCcchh--------ccc
Q 010355 227 LKFYEESESGRARKLCERLKKEKKILVILDDIWTNL---DLENVGIPF----GVRGCRVLMTARSQDVL--------SSK 291 (512)
Q Consensus 227 ~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~---~~~~l~~~~----~~~gs~iivTtR~~~v~--------~~~ 291 (512)
....+.+. +.-+|||||+.... .+....+.+ ...+..||+|++...-. ...
T Consensus 85 ------------~~~~~~l~--~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~SR 150 (233)
T PRK08727 85 ------------RDALEALE--GRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSR 150 (233)
T ss_pred ------------HHHHHHHh--cCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHHH
Confidence 11223333 34699999996432 222111111 13466799999864321 011
Q ss_pred cCCccceecCCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChhHHHH
Q 010355 292 MDCQNNFLIGVLNESEARDLFKKLVGDKIENNDLKSLAMNIVKACRGLPIAIVT 345 (512)
Q Consensus 292 ~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~GlPLai~~ 345 (512)
+.....+++++++.++-..++.+++..... .--.++..-|++.|.|-.-.+..
T Consensus 151 l~~~~~~~l~~~~~e~~~~iL~~~a~~~~l-~l~~e~~~~La~~~~rd~r~~l~ 203 (233)
T PRK08727 151 LAQCIRIGLPVLDDVARAAVLRERAQRRGL-ALDEAAIDWLLTHGERELAGLVA 203 (233)
T ss_pred HhcCceEEecCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHhCCCCHHHHHH
Confidence 223468899999999999999987642111 11235677888888876665533
No 47
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.63 E-value=1.6e-06 Score=82.38 Aligned_cols=192 Identities=18% Similarity=0.167 Sum_probs=117.4
Q ss_pred hHHHHHHHHHhc---CCCceEEEEEcCCCCcHHHHHHHHHHhhhhcCCC----CeEEEEEeCCCCCHHHHHHHHHHHhCC
Q 010355 155 MSTLNDVINALK---NPDVHMIGAYGMAGVGKTMLVKEVARQAKADKLF----DEVVYAEVSQRPDVKKIQGQIADKLGL 227 (512)
Q Consensus 155 ~~~l~~l~~~L~---~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f----~~~~wv~~~~~~~~~~ll~~i~~~l~~ 227 (512)
...++.|...|. ....+.+.|+|.+|+|||+++++++..+.....- -.++.|.+...++...++..|+.+++.
T Consensus 43 ~~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lga 122 (302)
T PF05621_consen 43 KEALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGA 122 (302)
T ss_pred HHHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCc
Confidence 344556666555 4457889999999999999999999876543111 157888999999999999999999999
Q ss_pred CCCCCCch-HHHHHHHHHHhCCCeEEEEEeCCCChh---------hhhhhCCCCC-CCCeEEEEEeCCcchhc----ccc
Q 010355 228 KFYEESES-GRARKLCERLKKEKKILVILDDIWTNL---------DLENVGIPFG-VRGCRVLMTARSQDVLS----SKM 292 (512)
Q Consensus 228 ~~~~~~~~-~~~~~l~~~l~~~k~~LlVlDdv~~~~---------~~~~l~~~~~-~~gs~iivTtR~~~v~~----~~~ 292 (512)
+....... .....+...++.-+.-+||+|.+.+.. .++.++...+ ..-+-|.+-|+....+- ...
T Consensus 123 P~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~A~~al~~D~QLa 202 (302)
T PF05621_consen 123 PYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTREAYRALRTDPQLA 202 (302)
T ss_pred ccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHHHHHHhccCHHHH
Confidence 87554333 333444455555566799999997641 1222222211 22234555555432220 011
Q ss_pred CCccceecCCCCHHH-HHHHHHHHh---C-CCCCCchhHHHHHHHHHHcCCChhHHHHH
Q 010355 293 DCQNNFLIGVLNESE-ARDLFKKLV---G-DKIENNDLKSLAMNIVKACRGLPIAIVTI 346 (512)
Q Consensus 293 ~~~~~~~l~~L~~~e-a~~Lf~~~~---~-~~~~~~~~~~~~~~I~~~~~GlPLai~~i 346 (512)
+....+.|++...++ ...|+...- . .....-...+++..|+..++|+.=-+..+
T Consensus 203 ~RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG~l~~l 261 (302)
T PF05621_consen 203 SRFEPFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIGELSRL 261 (302)
T ss_pred hccCCccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchHHHHHH
Confidence 233556666655543 444443332 2 11111223578899999999986544433
No 48
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.62 E-value=7.2e-07 Score=94.39 Aligned_cols=194 Identities=12% Similarity=0.134 Sum_probs=109.6
Q ss_pred ccCccccccchHHHHHHHHHhcCCCc-eEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCCCHHHHHHHHHH
Q 010355 145 IKGYEAFESRMSTLNDVINALKNPDV-HMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIAD 223 (512)
Q Consensus 145 ~~~~~~~~gR~~~l~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~i~~ 223 (512)
|.....++|.+..+..|...+..++. +.+.++|+.|+||||+|+.+++..--...+. ...+......+.|..
T Consensus 12 P~~f~divGQe~vv~~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~-------~~pCg~C~~C~~i~~ 84 (647)
T PRK07994 12 PQTFAEVVGQEHVLTALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGLNCETGIT-------ATPCGECDNCREIEQ 84 (647)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCC-------CCCCCCCHHHHHHHc
Confidence 34566789999999999998887665 4468999999999999999988754211100 001111111111111
Q ss_pred HhC-----CCCCCCCchHHHHHHHHHHh----CCCeEEEEEeCCCCh--hhhhhhCCCC--CCCCeEEEEEeCC-cchhc
Q 010355 224 KLG-----LKFYEESESGRARKLCERLK----KEKKILVILDDIWTN--LDLENVGIPF--GVRGCRVLMTARS-QDVLS 289 (512)
Q Consensus 224 ~l~-----~~~~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~--~~~~~l~~~~--~~~gs~iivTtR~-~~v~~ 289 (512)
.-. +........+.+..+.+.+. .+++-++|||++... ...+.+.-.+ +..++++|++|.+ ..+..
T Consensus 85 g~~~D~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~kLl~ 164 (647)
T PRK07994 85 GRFVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPV 164 (647)
T ss_pred CCCCCceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCccccch
Confidence 000 00000011122223333321 356779999999754 2333331111 1345555555544 33332
Q ss_pred cccCCccceecCCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChhHHHHH
Q 010355 290 SKMDCQNNFLIGVLNESEARDLFKKLVGDKIENNDLKSLAMNIVKACRGLPIAIVTI 346 (512)
Q Consensus 290 ~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~GlPLai~~i 346 (512)
........+.+.+|+.++....+.+.+...... .-......|++.++|.|.-+..+
T Consensus 165 TI~SRC~~~~f~~Ls~~ei~~~L~~il~~e~i~-~e~~aL~~Ia~~s~Gs~R~Al~l 220 (647)
T PRK07994 165 TILSRCLQFHLKALDVEQIRQQLEHILQAEQIP-FEPRALQLLARAADGSMRDALSL 220 (647)
T ss_pred HHHhhheEeeCCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHHH
Confidence 233445789999999999999998876322111 11345678999999987744433
No 49
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.61 E-value=2e-06 Score=89.72 Aligned_cols=185 Identities=14% Similarity=0.211 Sum_probs=108.1
Q ss_pred ccCccccccchHHHHHHHHHhcCCCc-eEEEEEcCCCCcHHHHHHHHHHhhhhc-------------------CCCCeEE
Q 010355 145 IKGYEAFESRMSTLNDVINALKNPDV-HMIGAYGMAGVGKTMLVKEVARQAKAD-------------------KLFDEVV 204 (512)
Q Consensus 145 ~~~~~~~~gR~~~l~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~-------------------~~f~~~~ 204 (512)
|.....++|.+..+..|..++..++. +.+.++|+.|+||||+|+.+++...-. ..|..++
T Consensus 12 P~~f~diiGq~~~v~~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dli 91 (546)
T PRK14957 12 PQSFAEVAGQQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDLI 91 (546)
T ss_pred cCcHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCceE
Confidence 34456788999999999998886554 557899999999999999999865311 0122233
Q ss_pred EEEeCCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHhCCCeEEEEEeCCCCh--hhhhhhCCCCC--CCCeEEEE
Q 010355 205 YAEVSQRPDVKKIQGQIADKLGLKFYEESESGRARKLCERLKKEKKILVILDDIWTN--LDLENVGIPFG--VRGCRVLM 280 (512)
Q Consensus 205 wv~~~~~~~~~~ll~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~--~~~~~l~~~~~--~~gs~iiv 280 (512)
++.........++ +.|+..+ ...-..+++-++|+|++... ..++.+.-.+. ...+.+|+
T Consensus 92 eidaas~~gvd~i-r~ii~~~----------------~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~fIL 154 (546)
T PRK14957 92 EIDAASRTGVEET-KEILDNI----------------QYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFIL 154 (546)
T ss_pred EeecccccCHHHH-HHHHHHH----------------HhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCCceEEE
Confidence 3333222222211 1221111 11111246679999999744 23333321111 34555555
Q ss_pred Ee-CCcchhccccCCccceecCCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChh-HHHHHH
Q 010355 281 TA-RSQDVLSSKMDCQNNFLIGVLNESEARDLFKKLVGDKIENNDLKSLAMNIVKACRGLPI-AIVTIA 347 (512)
Q Consensus 281 Tt-R~~~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~GlPL-ai~~ia 347 (512)
+| ....+..........+++.+++.++....+.+.+..... .--......|++.++|.+. |+..+-
T Consensus 155 ~Ttd~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~egi-~~e~~Al~~Ia~~s~GdlR~alnlLe 222 (546)
T PRK14957 155 ATTDYHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKENI-NSDEQSLEYIAYHAKGSLRDALSLLD 222 (546)
T ss_pred EECChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 44 433333223344578999999999998888876642221 1123456789999999664 444443
No 50
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.61 E-value=4.9e-06 Score=83.78 Aligned_cols=184 Identities=14% Similarity=0.151 Sum_probs=108.3
Q ss_pred cCccccccchHHHHHHHHHhcCCCc-eEEEEEcCCCCcHHHHHHHHHHhhhhcC--------------------CCCeEE
Q 010355 146 KGYEAFESRMSTLNDVINALKNPDV-HMIGAYGMAGVGKTMLVKEVARQAKADK--------------------LFDEVV 204 (512)
Q Consensus 146 ~~~~~~~gR~~~l~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~--------------------~f~~~~ 204 (512)
.....++|.+..++.|..++..+.. +.+.++|++|+||||+|+.++....-.. +++ ++
T Consensus 11 ~~~~~iig~~~~~~~l~~~~~~~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~-~~ 89 (355)
T TIGR02397 11 QTFEDVIGQEHIVQTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLD-VI 89 (355)
T ss_pred CcHhhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCC-EE
Confidence 4456788999999999998886554 5788999999999999999988753210 111 22
Q ss_pred EEEeCCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHhCCCeEEEEEeCCCCh--hhhhhhC--CCCCCCCeEEEE
Q 010355 205 YAEVSQRPDVKKIQGQIADKLGLKFYEESESGRARKLCERLKKEKKILVILDDIWTN--LDLENVG--IPFGVRGCRVLM 280 (512)
Q Consensus 205 wv~~~~~~~~~~ll~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~--~~~~~l~--~~~~~~gs~iiv 280 (512)
++......... -.+.++..+...+ . .+++-++|+|++... .....+. +..+...+.+|+
T Consensus 90 ~~~~~~~~~~~-~~~~l~~~~~~~p---------------~-~~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~lIl 152 (355)
T TIGR02397 90 EIDAASNNGVD-DIREILDNVKYAP---------------S-SGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVVFIL 152 (355)
T ss_pred EeeccccCCHH-HHHHHHHHHhcCc---------------c-cCCceEEEEeChhhcCHHHHHHHHHHHhCCccceeEEE
Confidence 33222111111 1222222221100 0 134568899998643 2233321 111134566667
Q ss_pred EeCCcc-hhccccCCccceecCCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChhHHHHHHH
Q 010355 281 TARSQD-VLSSKMDCQNNFLIGVLNESEARDLFKKLVGDKIENNDLKSLAMNIVKACRGLPIAIVTIAR 348 (512)
Q Consensus 281 TtR~~~-v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~GlPLai~~ia~ 348 (512)
+|.+.. +..........+.+.+++..+...++...+...... --.+.+..|++.++|.|..+.....
T Consensus 153 ~~~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~~-i~~~a~~~l~~~~~g~~~~a~~~le 220 (355)
T TIGR02397 153 ATTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGIK-IEDEALELIARAADGSLRDALSLLD 220 (355)
T ss_pred EeCCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCChHHHHHHHH
Confidence 765443 222122334578899999999999998876422211 1135678899999999876655443
No 51
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.61 E-value=9.1e-07 Score=93.39 Aligned_cols=197 Identities=12% Similarity=0.125 Sum_probs=110.0
Q ss_pred ccCccccccchHHHHHHHHHhcCCCc-eEEEEEcCCCCcHHHHHHHHHHhhhhcCCC--CeEEEEEeCCCCCHHHHHHHH
Q 010355 145 IKGYEAFESRMSTLNDVINALKNPDV-HMIGAYGMAGVGKTMLVKEVARQAKADKLF--DEVVYAEVSQRPDVKKIQGQI 221 (512)
Q Consensus 145 ~~~~~~~~gR~~~l~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f--~~~~wv~~~~~~~~~~ll~~i 221 (512)
|.....++|.+..+..|.+++..++. +.+.++|+.|+||||+|+.+++..--.... .+... ..++.....+.|
T Consensus 12 P~~f~dviGQe~vv~~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~----~pCg~C~~C~~i 87 (618)
T PRK14951 12 PRSFSEMVGQEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITA----TPCGVCQACRDI 87 (618)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCC----CCCCccHHHHHH
Confidence 34566789999999999999887665 567899999999999999998765311100 00000 001111111111
Q ss_pred HHHh-----CCCCCCCCchHHHHHHHHHHh----CCCeEEEEEeCCCCh--hhhhhhCCCCC--CCCeEEEEEeCC-cch
Q 010355 222 ADKL-----GLKFYEESESGRARKLCERLK----KEKKILVILDDIWTN--LDLENVGIPFG--VRGCRVLMTARS-QDV 287 (512)
Q Consensus 222 ~~~l-----~~~~~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~--~~~~~l~~~~~--~~gs~iivTtR~-~~v 287 (512)
...- .+........+.+..+.+.+. .++.-++|||+++.. ..++.+...+. ...+++|++|.+ ..+
T Consensus 88 ~~g~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd~~ki 167 (618)
T PRK14951 88 DSGRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQKV 167 (618)
T ss_pred HcCCCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECCchhh
Confidence 0000 000000011112223333221 245568999999754 33444322221 345666665543 333
Q ss_pred hccccCCccceecCCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChhHHHHH
Q 010355 288 LSSKMDCQNNFLIGVLNESEARDLFKKLVGDKIENNDLKSLAMNIVKACRGLPIAIVTI 346 (512)
Q Consensus 288 ~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~GlPLai~~i 346 (512)
..........+.+++|+.++....+.+.+......- -...+..|++.++|.+.-+..+
T Consensus 168 l~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~egi~i-e~~AL~~La~~s~GslR~al~l 225 (618)
T PRK14951 168 PVTVLSRCLQFNLRPMAPETVLEHLTQVLAAENVPA-EPQALRLLARAARGSMRDALSL 225 (618)
T ss_pred hHHHHHhceeeecCCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHHHHH
Confidence 322344557899999999999999988764322211 1356778899999987655444
No 52
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.60 E-value=1.1e-06 Score=92.60 Aligned_cols=180 Identities=12% Similarity=0.195 Sum_probs=108.4
Q ss_pred ccCccccccchHHHHHHHHHhcCCCc-eEEEEEcCCCCcHHHHHHHHHHhhhhcCC-------------------CCeEE
Q 010355 145 IKGYEAFESRMSTLNDVINALKNPDV-HMIGAYGMAGVGKTMLVKEVARQAKADKL-------------------FDEVV 204 (512)
Q Consensus 145 ~~~~~~~~gR~~~l~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-------------------f~~~~ 204 (512)
|.....++|.+..+..|..++..++. +.+.++|+.|+||||+|+.+++...-... |..++
T Consensus 12 P~tFddIIGQe~vv~~L~~ai~~~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i~~g~~~Dvl 91 (709)
T PRK08691 12 PKTFADLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQIDAGRYVDLL 91 (709)
T ss_pred CCCHHHHcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHHhccCccceE
Confidence 44566789999999999999987664 56899999999999999999886532111 11112
Q ss_pred EEEeCCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHH----hCCCeEEEEEeCCCChhh--hhhhCCCC--CCCCe
Q 010355 205 YAEVSQRPDVKKIQGQIADKLGLKFYEESESGRARKLCERL----KKEKKILVILDDIWTNLD--LENVGIPF--GVRGC 276 (512)
Q Consensus 205 wv~~~~~~~~~~ll~~i~~~l~~~~~~~~~~~~~~~l~~~l----~~~k~~LlVlDdv~~~~~--~~~l~~~~--~~~gs 276 (512)
.++....... ..+..+.... ..+++-++|||++..... .+.+...+ ....+
T Consensus 92 EidaAs~~gV---------------------d~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v 150 (709)
T PRK08691 92 EIDAASNTGI---------------------DNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHV 150 (709)
T ss_pred EEeccccCCH---------------------HHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCCCCc
Confidence 2222221121 1122222211 124567999999975422 22221111 13456
Q ss_pred EEEEEeCCcc-hhccccCCccceecCCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChhHHHHH
Q 010355 277 RVLMTARSQD-VLSSKMDCQNNFLIGVLNESEARDLFKKLVGDKIENNDLKSLAMNIVKACRGLPIAIVTI 346 (512)
Q Consensus 277 ~iivTtR~~~-v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~GlPLai~~i 346 (512)
++|++|.... +.....+....+.+.+++.++....+.+.+......- -...+..|++.++|.+.-+..+
T Consensus 151 ~fILaTtd~~kL~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi~i-d~eAL~~Ia~~A~GslRdAlnL 220 (709)
T PRK08691 151 KFILATTDPHKVPVTVLSRCLQFVLRNMTAQQVADHLAHVLDSEKIAY-EPPALQLLGRAAAGSMRDALSL 220 (709)
T ss_pred EEEEEeCCccccchHHHHHHhhhhcCCCCHHHHHHHHHHHHHHcCCCc-CHHHHHHHHHHhCCCHHHHHHH
Confidence 6776665432 2222233446788999999999999988775322111 1346788999999988654443
No 53
>PRK09087 hypothetical protein; Validated
Probab=98.59 E-value=1.5e-06 Score=81.14 Aligned_cols=145 Identities=20% Similarity=0.163 Sum_probs=89.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHhCC
Q 010355 169 DVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIADKLGLKFYEESESGRARKLCERLKKE 248 (512)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 248 (512)
..+.+.|+|++|+|||+|++.++..... .|++.. .+...++ ..+..
T Consensus 43 ~~~~l~l~G~~GsGKThLl~~~~~~~~~-------~~i~~~------~~~~~~~--------------------~~~~~- 88 (226)
T PRK09087 43 PSPVVVLAGPVGSGKTHLASIWREKSDA-------LLIHPN------EIGSDAA--------------------NAAAE- 88 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHhcCC-------EEecHH------HcchHHH--------------------Hhhhc-
Confidence 3467999999999999999998876431 244321 1111111 11111
Q ss_pred CeEEEEEeCCCCh----hhhhhhCCCCCCCCeEEEEEeCCcchh--------ccccCCccceecCCCCHHHHHHHHHHHh
Q 010355 249 KKILVILDDIWTN----LDLENVGIPFGVRGCRVLMTARSQDVL--------SSKMDCQNNFLIGVLNESEARDLFKKLV 316 (512)
Q Consensus 249 k~~LlVlDdv~~~----~~~~~l~~~~~~~gs~iivTtR~~~v~--------~~~~~~~~~~~l~~L~~~ea~~Lf~~~~ 316 (512)
-+|+|||+... ..+-.+.......|..+|+|++..... ...+....++++++++.++-.+++.+.+
T Consensus 89 --~~l~iDDi~~~~~~~~~lf~l~n~~~~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~~ 166 (226)
T PRK09087 89 --GPVLIEDIDAGGFDETGLFHLINSVRQAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKLF 166 (226)
T ss_pred --CeEEEECCCCCCCCHHHHHHHHHHHHhCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHHHH
Confidence 37888999532 122222111124577899998753321 1123445789999999999999999888
Q ss_pred CCCCCCchhHHHHHHHHHHcCCChhHHHHHHHHh
Q 010355 317 GDKIENNDLKSLAMNIVKACRGLPIAIVTIARAL 350 (512)
Q Consensus 317 ~~~~~~~~~~~~~~~I~~~~~GlPLai~~ia~~L 350 (512)
..... .--+++..-|++.+.|.+-++..+...|
T Consensus 167 ~~~~~-~l~~ev~~~La~~~~r~~~~l~~~l~~L 199 (226)
T PRK09087 167 ADRQL-YVDPHVVYYLVSRMERSLFAAQTIVDRL 199 (226)
T ss_pred HHcCC-CCCHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 53211 1124678889999998888777544444
No 54
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.59 E-value=1.3e-06 Score=90.99 Aligned_cols=184 Identities=13% Similarity=0.186 Sum_probs=110.3
Q ss_pred ccCccccccchHHHHHHHHHhcCCCce-EEEEEcCCCCcHHHHHHHHHHhhhhcC-------------------CCCeEE
Q 010355 145 IKGYEAFESRMSTLNDVINALKNPDVH-MIGAYGMAGVGKTMLVKEVARQAKADK-------------------LFDEVV 204 (512)
Q Consensus 145 ~~~~~~~~gR~~~l~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~-------------------~f~~~~ 204 (512)
|.....++|.+..+..|.+++..+..+ .+.++|+.|+||||+|+.+++..--.. .|.-++
T Consensus 12 P~~f~divGq~~v~~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~~ 91 (509)
T PRK14958 12 PRCFQEVIGQAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDLF 91 (509)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceEE
Confidence 445667899999999999999866654 578999999999999999998763211 111233
Q ss_pred EEEeCCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHhCCCeEEEEEeCCCCh--hhhhhhCCCC--CCCCeEEEE
Q 010355 205 YAEVSQRPDVKKIQGQIADKLGLKFYEESESGRARKLCERLKKEKKILVILDDIWTN--LDLENVGIPF--GVRGCRVLM 280 (512)
Q Consensus 205 wv~~~~~~~~~~ll~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~--~~~~~l~~~~--~~~gs~iiv 280 (512)
.++........++ +.++..+...+ ..++.-++|||++... ...+.+.-.+ +...+++|+
T Consensus 92 eidaas~~~v~~i-R~l~~~~~~~p----------------~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fIl 154 (509)
T PRK14958 92 EVDAASRTKVEDT-RELLDNIPYAP----------------TKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFIL 154 (509)
T ss_pred EEcccccCCHHHH-HHHHHHHhhcc----------------ccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEEE
Confidence 3433333333332 22332221110 1246678999999754 2333331111 134566666
Q ss_pred EeCCc-chhccccCCccceecCCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChhHHHHH
Q 010355 281 TARSQ-DVLSSKMDCQNNFLIGVLNESEARDLFKKLVGDKIENNDLKSLAMNIVKACRGLPIAIVTI 346 (512)
Q Consensus 281 TtR~~-~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~GlPLai~~i 346 (512)
+|.+. .+..........+.+.+++..+....+.+.+......- -......|++.++|.|.-+..+
T Consensus 155 attd~~kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~egi~~-~~~al~~ia~~s~GslR~al~l 220 (509)
T PRK14958 155 ATTDHHKLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENVEF-ENAALDLLARAANGSVRDALSL 220 (509)
T ss_pred EECChHhchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCcHHHHHHH
Confidence 65443 33222233446789999999998888777764222111 1345678899999988654443
No 55
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.59 E-value=9.9e-07 Score=83.03 Aligned_cols=166 Identities=16% Similarity=0.122 Sum_probs=99.7
Q ss_pred HHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCchH
Q 010355 157 TLNDVINALKNPDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIADKLGLKFYEESESG 236 (512)
Q Consensus 157 ~l~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~i~~~l~~~~~~~~~~~ 236 (512)
.+..+..+......+.+.|+|++|+|||+|++.+++..... ...+.|+++.....
T Consensus 32 a~~~l~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~--~~~v~y~~~~~~~~----------------------- 86 (235)
T PRK08084 32 LLAALQNALRQEHSGYIYLWSREGAGRSHLLHAACAELSQR--GRAVGYVPLDKRAW----------------------- 86 (235)
T ss_pred HHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHhC--CCeEEEEEHHHHhh-----------------------
Confidence 44455555445555789999999999999999999876632 34566766532100
Q ss_pred HHHHHHHHHhCCCeEEEEEeCCCCh---hhhhhh----CCCCCCCC-eEEEEEeCCcchh--------ccccCCccceec
Q 010355 237 RARKLCERLKKEKKILVILDDIWTN---LDLENV----GIPFGVRG-CRVLMTARSQDVL--------SSKMDCQNNFLI 300 (512)
Q Consensus 237 ~~~~l~~~l~~~k~~LlVlDdv~~~---~~~~~l----~~~~~~~g-s~iivTtR~~~v~--------~~~~~~~~~~~l 300 (512)
....+.+.+. +--+|+|||+... ..|... .......| .++|+||+..... ...+....++.+
T Consensus 87 ~~~~~~~~~~--~~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g~~~~l 164 (235)
T PRK08084 87 FVPEVLEGME--QLSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKL 164 (235)
T ss_pred hhHHHHHHhh--hCCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHHHHhCCceeee
Confidence 0011222222 1248899999643 223221 11111233 4799999865322 111234478999
Q ss_pred CCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChhHHHHHHHHh
Q 010355 301 GVLNESEARDLFKKLVGDKIENNDLKSLAMNIVKACRGLPIAIVTIARAL 350 (512)
Q Consensus 301 ~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~GlPLai~~ia~~L 350 (512)
.+++.++-.+++.+.+..... .--+++..-|++.+.|..-.+..+-..|
T Consensus 165 ~~~~~~~~~~~l~~~a~~~~~-~l~~~v~~~L~~~~~~d~r~l~~~l~~l 213 (235)
T PRK08084 165 QPLSDEEKLQALQLRARLRGF-ELPEDVGRFLLKRLDREMRTLFMTLDQL 213 (235)
T ss_pred cCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHhhcCCHHHHHHHHHHH
Confidence 999999999998876642211 1124677888898888766665554443
No 56
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.57 E-value=2.3e-06 Score=86.19 Aligned_cols=169 Identities=14% Similarity=0.125 Sum_probs=102.6
Q ss_pred ccccccchHHHHHHHHHhcCC----------CceEEEEEcCCCCcHHHHHHHHHHhhhhcC-------------------
Q 010355 148 YEAFESRMSTLNDVINALKNP----------DVHMIGAYGMAGVGKTMLVKEVARQAKADK------------------- 198 (512)
Q Consensus 148 ~~~~~gR~~~l~~l~~~L~~~----------~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~------------------- 198 (512)
...++|.+..+..|..++..+ -.+.+.++|++|+|||++|..++...--..
T Consensus 4 f~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~~ 83 (394)
T PRK07940 4 WDDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAGT 83 (394)
T ss_pred hhhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCC
Confidence 346789998889898888754 356789999999999999999987643111
Q ss_pred CCCeEEEEEeC-CCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHh----CCCeEEEEEeCCCCh--hhhhhh----
Q 010355 199 LFDEVVYAEVS-QRPDVKKIQGQIADKLGLKFYEESESGRARKLCERLK----KEKKILVILDDIWTN--LDLENV---- 267 (512)
Q Consensus 199 ~f~~~~wv~~~-~~~~~~~ll~~i~~~l~~~~~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~--~~~~~l---- 267 (512)
|.+ +.++... ..... ..+..+.+.+. .+++-++|+|++... ...+.+
T Consensus 84 hpD-~~~i~~~~~~i~i---------------------~~iR~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~L 141 (394)
T PRK07940 84 HPD-VRVVAPEGLSIGV---------------------DEVRELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAV 141 (394)
T ss_pred CCC-EEEeccccccCCH---------------------HHHHHHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHh
Confidence 111 1122111 11111 12223333322 245568888999754 222222
Q ss_pred CCCCCCCCeEEEEEeCCc-chhccccCCccceecCCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChhHHHHH
Q 010355 268 GIPFGVRGCRVLMTARSQ-DVLSSKMDCQNNFLIGVLNESEARDLFKKLVGDKIENNDLKSLAMNIVKACRGLPIAIVTI 346 (512)
Q Consensus 268 ~~~~~~~gs~iivTtR~~-~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~GlPLai~~i 346 (512)
..| .+++.+|++|.+. .+..........+.+.+++.++....+.+..+. + .+.+..++..++|.|.....+
T Consensus 142 Eep--~~~~~fIL~a~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~~~---~---~~~a~~la~~s~G~~~~A~~l 213 (394)
T PRK07940 142 EEP--PPRTVWLLCAPSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRDGV---D---PETARRAARASQGHIGRARRL 213 (394)
T ss_pred hcC--CCCCeEEEEECChHHChHHHHhhCeEEECCCCCHHHHHHHHHHhcCC---C---HHHHHHHHHHcCCCHHHHHHH
Confidence 222 3456666666554 333333344578999999999999888754321 1 245678899999999755433
No 57
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.56 E-value=2.6e-06 Score=87.60 Aligned_cols=183 Identities=10% Similarity=0.092 Sum_probs=110.5
Q ss_pred ccCccccccchHHHHHHHHHhcCCCce-EEEEEcCCCCcHHHHHHHHHHhhhhc-------------------CCCCeEE
Q 010355 145 IKGYEAFESRMSTLNDVINALKNPDVH-MIGAYGMAGVGKTMLVKEVARQAKAD-------------------KLFDEVV 204 (512)
Q Consensus 145 ~~~~~~~~gR~~~l~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~-------------------~~f~~~~ 204 (512)
|.....++|.+..++.|.+.+..++.+ .+.++|+.|+||||+|+.++...--. ..+.-++
T Consensus 9 P~~f~dliGQe~vv~~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv~ 88 (491)
T PRK14964 9 PSSFKDLVGQDVLVRILRNAFTLNKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDVI 88 (491)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCEE
Confidence 345667899999999988888866654 89999999999999999998753210 1122234
Q ss_pred EEEeCCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHhCCCeEEEEEeCCCCh--hhhhhhCCCC--CCCCeEEEE
Q 010355 205 YAEVSQRPDVKKIQGQIADKLGLKFYEESESGRARKLCERLKKEKKILVILDDIWTN--LDLENVGIPF--GVRGCRVLM 280 (512)
Q Consensus 205 wv~~~~~~~~~~ll~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~--~~~~~l~~~~--~~~gs~iiv 280 (512)
.++.+...+..++ +.++......+ ..+++-++|+|++... ...+.+.-.+ +.+++++|+
T Consensus 89 eidaas~~~vddI-R~Iie~~~~~P----------------~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fIl 151 (491)
T PRK14964 89 EIDAASNTSVDDI-KVILENSCYLP----------------ISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFIL 151 (491)
T ss_pred EEecccCCCHHHH-HHHHHHHHhcc----------------ccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEEE
Confidence 4444433333332 22222211100 0145678999999644 2233331111 135666666
Q ss_pred EeCC-cchhccccCCccceecCCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChhHHHH
Q 010355 281 TARS-QDVLSSKMDCQNNFLIGVLNESEARDLFKKLVGDKIENNDLKSLAMNIVKACRGLPIAIVT 345 (512)
Q Consensus 281 TtR~-~~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~GlPLai~~ 345 (512)
+|.. ..+..........+.+.+++..+....+.+.+......- -.+.+..|++.++|.+..+..
T Consensus 152 atte~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi~i-~~eAL~lIa~~s~GslR~als 216 (491)
T PRK14964 152 ATTEVKKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKENIEH-DEESLKLIAENSSGSMRNALF 216 (491)
T ss_pred EeCChHHHHHHHHHhheeeecccccHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHHHH
Confidence 6643 333322334557899999999999999988775322211 134667889999988764433
No 58
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.55 E-value=2.3e-06 Score=86.19 Aligned_cols=172 Identities=19% Similarity=0.249 Sum_probs=101.1
Q ss_pred CccccccchHHHHHHHHHhc----C---------CCceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCCC
Q 010355 147 GYEAFESRMSTLNDVINALK----N---------PDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPD 213 (512)
Q Consensus 147 ~~~~~~gR~~~l~~l~~~L~----~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~ 213 (512)
....+.|++..+++|.+.+. . ...+.+.|+|++|+|||+||+.+++.... .| +.+..
T Consensus 120 ~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~--~~-----~~v~~--- 189 (364)
T TIGR01242 120 SYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNA--TF-----IRVVG--- 189 (364)
T ss_pred CHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCC--CE-----Eecch---
Confidence 34567899999988887653 1 22456899999999999999999987652 22 22211
Q ss_pred HHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHhCCCeEEEEEeCCCChh----------------hhhhhCCC---C-CC
Q 010355 214 VKKIQGQIADKLGLKFYEESESGRARKLCERLKKEKKILVILDDIWTNL----------------DLENVGIP---F-GV 273 (512)
Q Consensus 214 ~~~ll~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~----------------~~~~l~~~---~-~~ 273 (512)
..+.... ++ ........+.+......+.+|+||+++... .+..+... + ..
T Consensus 190 -~~l~~~~---~g------~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~ 259 (364)
T TIGR01242 190 -SELVRKY---IG------EGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPR 259 (364)
T ss_pred -HHHHHHh---hh------HHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCC
Confidence 1111111 11 011123334444444567899999986431 11111100 1 13
Q ss_pred CCeEEEEEeCCcchhcc-c---cCCccceecCCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCCh
Q 010355 274 RGCRVLMTARSQDVLSS-K---MDCQNNFLIGVLNESEARDLFKKLVGDKIENNDLKSLAMNIVKACRGLP 340 (512)
Q Consensus 274 ~gs~iivTtR~~~v~~~-~---~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~GlP 340 (512)
.+.+||+||........ . ......+.+++.+.++..++|..++......... ....+++.+.|..
T Consensus 260 ~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~--~~~~la~~t~g~s 328 (364)
T TIGR01242 260 GNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDV--DLEAIAKMTEGAS 328 (364)
T ss_pred CCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccC--CHHHHHHHcCCCC
Confidence 46778888875432211 1 1223578899999999999999887543322211 2456778887764
No 59
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.55 E-value=2e-07 Score=87.72 Aligned_cols=92 Identities=14% Similarity=0.100 Sum_probs=63.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCC--CCHHHHHHHH-----HHHhCCCCCCC-Cch-HHHH
Q 010355 169 DVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQR--PDVKKIQGQI-----ADKLGLKFYEE-SES-GRAR 239 (512)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~--~~~~~ll~~i-----~~~l~~~~~~~-~~~-~~~~ 239 (512)
....++|.|++|+|||||++.+++..... +|+.++|+.+... .++.++++.+ +..++.+.... ... ....
T Consensus 15 ~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~-~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~~ 93 (249)
T cd01128 15 KGQRGLIVAPPKAGKTTLLQSIANAITKN-HPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVLE 93 (249)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccccc-cCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHHH
Confidence 34678999999999999999999988764 8999999997666 7899999998 33333311100 000 1112
Q ss_pred HHHHHHhCCCeEEEEEeCCCCh
Q 010355 240 KLCERLKKEKKILVILDDIWTN 261 (512)
Q Consensus 240 ~l~~~l~~~k~~LlVlDdv~~~ 261 (512)
........+++.+|++|++...
T Consensus 94 ~a~~~~~~G~~vll~iDei~r~ 115 (249)
T cd01128 94 KAKRLVEHGKDVVILLDSITRL 115 (249)
T ss_pred HHHHHHHCCCCEEEEEECHHHh
Confidence 2222224579999999999643
No 60
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=98.55 E-value=9.6e-07 Score=97.60 Aligned_cols=182 Identities=15% Similarity=0.127 Sum_probs=104.3
Q ss_pred cCccccccchHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHhhhhcCC----CCeEE-EEEeCCCCCHHHHHHH
Q 010355 146 KGYEAFESRMSTLNDVINALKNPDVHMIGAYGMAGVGKTMLVKEVARQAKADKL----FDEVV-YAEVSQRPDVKKIQGQ 220 (512)
Q Consensus 146 ~~~~~~~gR~~~l~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----f~~~~-wv~~~~~~~~~~ll~~ 220 (512)
....+++||+.++.+++..|.......+.++|++|+||||||+.+++....... ....+ .+.++.-..
T Consensus 184 ~~ld~~iGr~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l~a------- 256 (852)
T TIGR03345 184 GKIDPVLGRDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLLQA------- 256 (852)
T ss_pred CCCCcccCCHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhhhc-------
Confidence 446789999999999999998777777889999999999999999988643211 12223 233321000
Q ss_pred HHHHhCCCCCCCCchHHHHHHHHHHh-CCCeEEEEEeCCCChh---------hhhhhCCCCC-CCCeEEEEEeCCcch--
Q 010355 221 IADKLGLKFYEESESGRARKLCERLK-KEKKILVILDDIWTNL---------DLENVGIPFG-VRGCRVLMTARSQDV-- 287 (512)
Q Consensus 221 i~~~l~~~~~~~~~~~~~~~l~~~l~-~~k~~LlVlDdv~~~~---------~~~~l~~~~~-~~gs~iivTtR~~~v-- 287 (512)
+ ..........+..+...+. .+++++|++|++.... +...+..|.- ....++|-||.....
T Consensus 257 -----g-~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~~G~l~~IgaTT~~e~~~ 330 (852)
T TIGR03345 257 -----G-ASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALARGELRTIAATTWAEYKK 330 (852)
T ss_pred -----c-cccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHhhCCCeEEEEecCHHHHhh
Confidence 0 0000011122333444443 2468999999986542 1111223322 333566666664321
Q ss_pred --h--ccccCCccceecCCCCHHHHHHHHHHHhC---CCCCCchhHHHHHHHHHHcCCCh
Q 010355 288 --L--SSKMDCQNNFLIGVLNESEARDLFKKLVG---DKIENNDLKSLAMNIVKACRGLP 340 (512)
Q Consensus 288 --~--~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~---~~~~~~~~~~~~~~I~~~~~GlP 340 (512)
. .........+.+++++.+++..+|..... ....-.-..+....+++.+.+.+
T Consensus 331 ~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ryi 390 (852)
T TIGR03345 331 YFEKDPALTRRFQVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRYI 390 (852)
T ss_pred hhhccHHHHHhCeEEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHccccc
Confidence 0 11123446899999999999999765442 11111111345556666665543
No 61
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.54 E-value=2.1e-06 Score=89.67 Aligned_cols=195 Identities=13% Similarity=0.122 Sum_probs=106.7
Q ss_pred ccCccccccchHHHHHHHHHhcCCC-ceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCCCHHHHHHHHHH
Q 010355 145 IKGYEAFESRMSTLNDVINALKNPD-VHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIAD 223 (512)
Q Consensus 145 ~~~~~~~~gR~~~l~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~i~~ 223 (512)
|.....++|++..+..|..++..+. .+.+.++|+.|+||||+|+.+++...-.. |.... .+......+.+..
T Consensus 12 P~~F~dIIGQe~iv~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~------~~~~~-~Cg~C~sCr~i~~ 84 (605)
T PRK05896 12 PHNFKQIIGQELIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAINCLN------PKDGD-CCNSCSVCESINT 84 (605)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCCC------CCCCC-CCcccHHHHHHHc
Confidence 4456678999999999999887554 45788999999999999999998764211 11100 1111111111111
Q ss_pred HhCCCC---C--CCCchHHHHHHHHHHh----CCCeEEEEEeCCCCh--hhhhhhCCCC--CCCCeEEEEEeCC-cchhc
Q 010355 224 KLGLKF---Y--EESESGRARKLCERLK----KEKKILVILDDIWTN--LDLENVGIPF--GVRGCRVLMTARS-QDVLS 289 (512)
Q Consensus 224 ~l~~~~---~--~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~--~~~~~l~~~~--~~~gs~iivTtR~-~~v~~ 289 (512)
...... . .......+..+...+. .+++-++|+|++... ..+..+.-.+ +..++.+|++|.. ..+..
T Consensus 85 ~~h~DiieIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~KLl~ 164 (605)
T PRK05896 85 NQSVDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQKIPL 164 (605)
T ss_pred CCCCceEEeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChHhhhH
Confidence 100000 0 0011111222222221 123457999998653 3333332111 1335555555533 33322
Q ss_pred cccCCccceecCCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChh-HHHHHH
Q 010355 290 SKMDCQNNFLIGVLNESEARDLFKKLVGDKIENNDLKSLAMNIVKACRGLPI-AIVTIA 347 (512)
Q Consensus 290 ~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~GlPL-ai~~ia 347 (512)
........+++.+++..+....+...+...... --...+..|++.++|.|. |+..+-
T Consensus 165 TI~SRcq~ieF~~Ls~~eL~~~L~~il~kegi~-Is~eal~~La~lS~GdlR~AlnlLe 222 (605)
T PRK05896 165 TIISRCQRYNFKKLNNSELQELLKSIAKKEKIK-IEDNAIDKIADLADGSLRDGLSILD 222 (605)
T ss_pred HHHhhhhhcccCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCcHHHHHHHHH
Confidence 223345689999999999999988876422111 113457789999999665 444433
No 62
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=98.54 E-value=2.1e-06 Score=93.83 Aligned_cols=178 Identities=13% Similarity=0.131 Sum_probs=106.5
Q ss_pred ccCccccccchHHHHHHHHHhcCCCc-eEEEEEcCCCCcHHHHHHHHHHhhhhcCCC---------------------Ce
Q 010355 145 IKGYEAFESRMSTLNDVINALKNPDV-HMIGAYGMAGVGKTMLVKEVARQAKADKLF---------------------DE 202 (512)
Q Consensus 145 ~~~~~~~~gR~~~l~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f---------------------~~ 202 (512)
|.....++|.+..++.|..++..+++ +.+.++|+.|+||||+|+.+++.+.-.... ..
T Consensus 11 P~~f~eiiGqe~v~~~L~~~i~~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~~g~~~~~d 90 (824)
T PRK07764 11 PATFAEVIGQEHVTEPLSTALDSGRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALAPGGPGSLD 90 (824)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHHcCCCCCCc
Confidence 34456789999999999999987665 457899999999999999998876421100 01
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHH----hCCCeEEEEEeCCCCh--hhhhhhCCCCC--CC
Q 010355 203 VVYAEVSQRPDVKKIQGQIADKLGLKFYEESESGRARKLCERL----KKEKKILVILDDIWTN--LDLENVGIPFG--VR 274 (512)
Q Consensus 203 ~~wv~~~~~~~~~~ll~~i~~~l~~~~~~~~~~~~~~~l~~~l----~~~k~~LlVlDdv~~~--~~~~~l~~~~~--~~ 274 (512)
+++++......+ ..+..+.+.+ ..++.-++|||++... ...+.|...+. ..
T Consensus 91 v~eidaas~~~V---------------------d~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~ 149 (824)
T PRK07764 91 VTEIDAASHGGV---------------------DDARELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPE 149 (824)
T ss_pred EEEecccccCCH---------------------HHHHHHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCC
Confidence 122222111111 1222222221 1245668899999754 23333311111 34
Q ss_pred CeEEEEEeCC-cchhccccCCccceecCCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChhHHH
Q 010355 275 GCRVLMTARS-QDVLSSKMDCQNNFLIGVLNESEARDLFKKLVGDKIENNDLKSLAMNIVKACRGLPIAIV 344 (512)
Q Consensus 275 gs~iivTtR~-~~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~GlPLai~ 344 (512)
++.+|++|.+ ..+..........|.+.+++.++...++.+.+......- -......|++.++|.+..+.
T Consensus 150 ~~~fIl~tt~~~kLl~TIrSRc~~v~F~~l~~~~l~~~L~~il~~EGv~i-d~eal~lLa~~sgGdlR~Al 219 (824)
T PRK07764 150 HLKFIFATTEPDKVIGTIRSRTHHYPFRLVPPEVMRGYLERICAQEGVPV-EPGVLPLVIRAGGGSVRDSL 219 (824)
T ss_pred CeEEEEEeCChhhhhHHHHhheeEEEeeCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHHH
Confidence 5666655543 333332334557899999999999988888764222111 13456788999999885443
No 63
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.54 E-value=2.3e-06 Score=89.82 Aligned_cols=180 Identities=12% Similarity=0.161 Sum_probs=105.6
Q ss_pred cCccccccchHHHHHHHHHhcCCCc-eEEEEEcCCCCcHHHHHHHHHHhhhhcC-------------------CCCeEEE
Q 010355 146 KGYEAFESRMSTLNDVINALKNPDV-HMIGAYGMAGVGKTMLVKEVARQAKADK-------------------LFDEVVY 205 (512)
Q Consensus 146 ~~~~~~~gR~~~l~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~-------------------~f~~~~w 205 (512)
.....++|.+..++.|..++..++. +.+.++|+.|+||||+|+.++....-.. .|..+++
T Consensus 13 ~~f~divGq~~v~~~L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~~e 92 (527)
T PRK14969 13 KSFSELVGQEHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDLIE 92 (527)
T ss_pred CcHHHhcCcHHHHHHHHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceeE
Confidence 4456788999999999999887655 4568999999999999999988763211 1111223
Q ss_pred EEeCCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHhCCCeEEEEEeCCCChh--hhhhhCCCC--CCCCeEEEEE
Q 010355 206 AEVSQRPDVKKIQGQIADKLGLKFYEESESGRARKLCERLKKEKKILVILDDIWTNL--DLENVGIPF--GVRGCRVLMT 281 (512)
Q Consensus 206 v~~~~~~~~~~ll~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~--~~~~l~~~~--~~~gs~iivT 281 (512)
+..+....... ++.++..+...+ ..+++-++|+|++.... ..+.+.-.+ +...+.+|++
T Consensus 93 i~~~~~~~vd~-ir~l~~~~~~~p----------------~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~fIL~ 155 (527)
T PRK14969 93 VDAASNTQVDA-MRELLDNAQYAP----------------TRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILA 155 (527)
T ss_pred eeccccCCHHH-HHHHHHHHhhCc----------------ccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEEEEE
Confidence 32222222111 122222211100 12466799999997542 233321111 1345666665
Q ss_pred eCCc-chhccccCCccceecCCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChhHH
Q 010355 282 ARSQ-DVLSSKMDCQNNFLIGVLNESEARDLFKKLVGDKIENNDLKSLAMNIVKACRGLPIAI 343 (512)
Q Consensus 282 tR~~-~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~GlPLai 343 (512)
|.+. .+..........+++.+++.++....+.+.+...... --...+..|++.++|.+.-+
T Consensus 156 t~d~~kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~~egi~-~~~~al~~la~~s~Gslr~a 217 (527)
T PRK14969 156 TTDPQKIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQENIP-FDATALQLLARAAAGSMRDA 217 (527)
T ss_pred eCChhhCchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHH
Confidence 5443 3321122334689999999999998888776422211 11345678999999987633
No 64
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.53 E-value=1.4e-06 Score=81.85 Aligned_cols=172 Identities=12% Similarity=0.116 Sum_probs=97.7
Q ss_pred ccccc-cchH-HHHHHHHHhc-CCCceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHH
Q 010355 148 YEAFE-SRMS-TLNDVINALK-NPDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIADK 224 (512)
Q Consensus 148 ~~~~~-gR~~-~l~~l~~~L~-~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~i~~~ 224 (512)
...|+ |+.. .+..+..+.. ....+.+.|+|.+|+|||+||+.+++..... -..+++++..... ..+
T Consensus 17 ~d~f~~~~~~~~~~~l~~~~~~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~--~~~~~~i~~~~~~------~~~--- 85 (227)
T PRK08903 17 FDNFVAGENAELVARLRELAAGPVADRFFYLWGEAGSGRSHLLQALVADASYG--GRNARYLDAASPL------LAF--- 85 (227)
T ss_pred hcccccCCcHHHHHHHHHHHhccCCCCeEEEECCCCCCHHHHHHHHHHHHHhC--CCcEEEEehHHhH------HHH---
Confidence 34444 4433 3344444433 2345688999999999999999999876432 2234555543311 000
Q ss_pred hCCCCCCCCchHHHHHHHHHHhCCCeEEEEEeCCCChhh--hhhhCCCCC---CCCe-EEEEEeCCcchhcc-------c
Q 010355 225 LGLKFYEESESGRARKLCERLKKEKKILVILDDIWTNLD--LENVGIPFG---VRGC-RVLMTARSQDVLSS-------K 291 (512)
Q Consensus 225 l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~--~~~l~~~~~---~~gs-~iivTtR~~~v~~~-------~ 291 (512)
... ...-+||+||+..... ...+...+. ..+. .+|+|++....... .
T Consensus 86 ------------------~~~--~~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~sr 145 (227)
T PRK08903 86 ------------------DFD--PEAELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRTR 145 (227)
T ss_pred ------------------hhc--ccCCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHHH
Confidence 011 1335789999964321 111211111 2333 46666664332110 1
Q ss_pred cCCccceecCCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChhHHHHHHHHhc
Q 010355 292 MDCQNNFLIGVLNESEARDLFKKLVGDKIENNDLKSLAMNIVKACRGLPIAIVTIARALR 351 (512)
Q Consensus 292 ~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~GlPLai~~ia~~L~ 351 (512)
......+.++|++..+-..++.+.+..... .--.+....|++.+.|+|..+..+...|.
T Consensus 146 ~~~~~~i~l~pl~~~~~~~~l~~~~~~~~v-~l~~~al~~L~~~~~gn~~~l~~~l~~l~ 204 (227)
T PRK08903 146 LGWGLVYELKPLSDADKIAALKAAAAERGL-QLADEVPDYLLTHFRRDMPSLMALLDALD 204 (227)
T ss_pred HhcCeEEEecCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHhccCCHHHHHHHHHHHH
Confidence 122368899999998877777765432111 11245778889999999999887777653
No 65
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.49 E-value=1.1e-05 Score=84.90 Aligned_cols=184 Identities=13% Similarity=0.138 Sum_probs=109.3
Q ss_pred ccCccccccchHHHHHHHHHhcCCC-ceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCC-------------------eEE
Q 010355 145 IKGYEAFESRMSTLNDVINALKNPD-VHMIGAYGMAGVGKTMLVKEVARQAKADKLFD-------------------EVV 204 (512)
Q Consensus 145 ~~~~~~~~gR~~~l~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~-------------------~~~ 204 (512)
|.....++|.+..+..|.+++..++ .+.+.++|+.|+||||+|+.+++..--..... -++
T Consensus 12 P~sf~dIiGQe~v~~~L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~sC~~i~~g~hpDv~ 91 (624)
T PRK14959 12 PQTFAEVAGQETVKAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQCRKVTQGMHVDVV 91 (624)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHHHHHHhcCCCCceE
Confidence 3445677898888888888887665 57888999999999999999998764211000 022
Q ss_pred EEEeCCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHh----CCCeEEEEEeCCCCh--hhhhhhCCCC--CCCCe
Q 010355 205 YAEVSQRPDVKKIQGQIADKLGLKFYEESESGRARKLCERLK----KEKKILVILDDIWTN--LDLENVGIPF--GVRGC 276 (512)
Q Consensus 205 wv~~~~~~~~~~ll~~i~~~l~~~~~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~--~~~~~l~~~~--~~~gs 276 (512)
++.......+ ..+..+.+.+. .+++-+||||++... ..++.|.-.+ .....
T Consensus 92 eId~a~~~~I---------------------d~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ 150 (624)
T PRK14959 92 EIDGASNRGI---------------------DDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARV 150 (624)
T ss_pred EEecccccCH---------------------HHHHHHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCE
Confidence 2221111111 11222222221 245679999999654 2333331111 13455
Q ss_pred EEEEEeCC-cchhccccCCccceecCCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCCh-hHHHHHHHHh
Q 010355 277 RVLMTARS-QDVLSSKMDCQNNFLIGVLNESEARDLFKKLVGDKIENNDLKSLAMNIVKACRGLP-IAIVTIARAL 350 (512)
Q Consensus 277 ~iivTtR~-~~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~GlP-Lai~~ia~~L 350 (512)
.+|++|.. ..+..........+++.+++.++....+...+..... .--.+.+..|++.++|.+ .|+..+...+
T Consensus 151 ifILaTt~~~kll~TI~SRcq~i~F~pLs~~eL~~~L~~il~~egi-~id~eal~lIA~~s~GdlR~Al~lLeqll 225 (624)
T PRK14959 151 TFVLATTEPHKFPVTIVSRCQHFTFTRLSEAGLEAHLTKVLGREGV-DYDPAAVRLIARRAAGSVRDSMSLLGQVL 225 (624)
T ss_pred EEEEecCChhhhhHHHHhhhhccccCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 56665554 3332222333468899999999999988876642211 111356788999999965 5766665443
No 66
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=98.48 E-value=5.5e-06 Score=85.28 Aligned_cols=183 Identities=16% Similarity=0.133 Sum_probs=113.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHhCCC
Q 010355 170 VHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIADKLGLKFYEESESGRARKLCERLKKEK 249 (512)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k 249 (512)
...+.|+|..|+|||+|++.+++.......-..+++++ ..+++..+...++... .....+.+.+. .
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~------~~~f~~~~~~~l~~~~------~~~~~~~~~~~--~ 206 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMS------GDEFARKAVDILQKTH------KEIEQFKNEIC--Q 206 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEE------HHHHHHHHHHHHHHhh------hHHHHHHHHhc--c
Confidence 35689999999999999999998765432233455554 3456666666654210 12333444443 3
Q ss_pred eEEEEEeCCCChh---hh-hhhCCCCC---CCCeEEEEEeCCcchh--------ccccCCccceecCCCCHHHHHHHHHH
Q 010355 250 KILVILDDIWTNL---DL-ENVGIPFG---VRGCRVLMTARSQDVL--------SSKMDCQNNFLIGVLNESEARDLFKK 314 (512)
Q Consensus 250 ~~LlVlDdv~~~~---~~-~~l~~~~~---~~gs~iivTtR~~~v~--------~~~~~~~~~~~l~~L~~~ea~~Lf~~ 314 (512)
.-+|||||+.... .+ +.+...+. ..|..||+|+...... ...+....++.+.+++.++..+++.+
T Consensus 207 ~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~~ 286 (450)
T PRK14087 207 NDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIKK 286 (450)
T ss_pred CCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHHHHH
Confidence 4589999996432 11 22211111 4455788887654311 11223446788999999999999998
Q ss_pred HhCCCCC-CchhHHHHHHHHHHcCCChhHHHHHHHHhc-----c---C--CHHHHHHHHHHhc
Q 010355 315 LVGDKIE-NNDLKSLAMNIVKACRGLPIAIVTIARALR-----N---K--NTFEWKSALRELT 366 (512)
Q Consensus 315 ~~~~~~~-~~~~~~~~~~I~~~~~GlPLai~~ia~~L~-----~---~--~~~~w~~~l~~l~ 366 (512)
.+..... ..--.++..-|+..++|.|-.+.-+...+. . + +...-+.++..+.
T Consensus 287 ~~~~~gl~~~l~~evl~~Ia~~~~gd~R~L~gaL~~l~~~a~~~~~~~~it~~~v~~~l~~~~ 349 (450)
T PRK14087 287 EIKNQNIKQEVTEEAINFISNYYSDDVRKIKGSVSRLNFWSQQNPEEKIITIEIVSDLFRDIP 349 (450)
T ss_pred HHHhcCCCCCCCHHHHHHHHHccCCCHHHHHHHHHHHHHHHhcccCCCCCCHHHHHHHHhhcc
Confidence 8753221 122256888999999999998876664442 1 2 5566666776653
No 67
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.48 E-value=3.6e-06 Score=89.96 Aligned_cols=202 Identities=15% Similarity=0.120 Sum_probs=111.2
Q ss_pred cCccccccchHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHhhhhcCCC---CeEEEEEeCCC---CCHHHHHH
Q 010355 146 KGYEAFESRMSTLNDVINALKNPDVHMIGAYGMAGVGKTMLVKEVARQAKADKLF---DEVVYAEVSQR---PDVKKIQG 219 (512)
Q Consensus 146 ~~~~~~~gR~~~l~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f---~~~~wv~~~~~---~~~~~ll~ 219 (512)
.....++|+...+..+...+.......+.|+|++|+||||||+.+++.......+ ...-|+.+... .+...+..
T Consensus 151 ~~~~~iiGqs~~~~~l~~~ia~~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~~~i~~ 230 (615)
T TIGR02903 151 RAFSEIVGQERAIKALLAKVASPFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDPREVTN 230 (615)
T ss_pred CcHHhceeCcHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCHHHHhH
Confidence 4455688999999988888776667789999999999999999998776432222 12234444321 12222211
Q ss_pred HH---------------HHHhCCCCC------------------CCCchHHHHHHHHHHhCCCeEEEEEeCCCCh--hhh
Q 010355 220 QI---------------ADKLGLKFY------------------EESESGRARKLCERLKKEKKILVILDDIWTN--LDL 264 (512)
Q Consensus 220 ~i---------------~~~l~~~~~------------------~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~--~~~ 264 (512)
.+ +...+.... ..-.......+...+.. ++++++-+..|.. ..|
T Consensus 231 ~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~Q~~Ll~~Le~-~~v~~~~~~~~~~~~~~~ 309 (615)
T TIGR02903 231 PLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLLQNKLLKVLED-KRVEFSSSYYDPDDPNVP 309 (615)
T ss_pred HhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHHHHHHHHHHHhh-CeEEeecceeccCCcccc
Confidence 11 111121100 00112234455555553 5677776655432 234
Q ss_pred hhhCCCCC--CCCeEEEE--EeCCcchh-ccccCCccceecCCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCC
Q 010355 265 ENVGIPFG--VRGCRVLM--TARSQDVL-SSKMDCQNNFLIGVLNESEARDLFKKLVGDKIENNDLKSLAMNIVKACRGL 339 (512)
Q Consensus 265 ~~l~~~~~--~~gs~iiv--TtR~~~v~-~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~Gl 339 (512)
..+...+. .+...+++ ||++.... .........+.+.+++.++.+.++.+.+...... --.++...|.+.+..-
T Consensus 310 ~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~Il~~~a~~~~v~-ls~eal~~L~~ys~~g 388 (615)
T TIGR02903 310 KYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIALIVLNAAEKINVH-LAAGVEELIARYTIEG 388 (615)
T ss_pred hhhhhhcccCccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHCCCcH
Confidence 44432222 22333444 45544321 1112233567899999999999999887532111 1134555666666555
Q ss_pred hhHHHHHHHH
Q 010355 340 PIAIVTIARA 349 (512)
Q Consensus 340 PLai~~ia~~ 349 (512)
+.++..++..
T Consensus 389 Rraln~L~~~ 398 (615)
T TIGR02903 389 RKAVNILADV 398 (615)
T ss_pred HHHHHHHHHH
Confidence 6777766554
No 68
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=98.47 E-value=3e-06 Score=85.87 Aligned_cols=170 Identities=18% Similarity=0.267 Sum_probs=99.0
Q ss_pred ccccccchHHHHHHHHHhc----C---------CCceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCCCH
Q 010355 148 YEAFESRMSTLNDVINALK----N---------PDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDV 214 (512)
Q Consensus 148 ~~~~~gR~~~l~~l~~~L~----~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~ 214 (512)
+..+.|++..++.|...+. . ...+.|.|+|++|+|||+||+.+++.... . |+.+..
T Consensus 130 ~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~--~-----~i~v~~---- 198 (389)
T PRK03992 130 YEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNA--T-----FIRVVG---- 198 (389)
T ss_pred HHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCC--C-----EEEeeh----
Confidence 4567899998888877653 1 24567899999999999999999987652 2 222221
Q ss_pred HHHHHHHHHHhCCCCCCCCchHHHHHHHHHHhCCCeEEEEEeCCCChh------------h----hhhhC---CCC-CCC
Q 010355 215 KKIQGQIADKLGLKFYEESESGRARKLCERLKKEKKILVILDDIWTNL------------D----LENVG---IPF-GVR 274 (512)
Q Consensus 215 ~~ll~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~------------~----~~~l~---~~~-~~~ 274 (512)
..+.... .+ ........++.......+.+|+||++.... . +..+. ..+ ...
T Consensus 199 ~~l~~~~---~g------~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~ 269 (389)
T PRK03992 199 SELVQKF---IG------EGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRG 269 (389)
T ss_pred HHHhHhh---cc------chHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCC
Confidence 1111110 01 111223344444444568999999996431 0 11111 011 134
Q ss_pred CeEEEEEeCCcchhcc-cc---CCccceecCCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCC
Q 010355 275 GCRVLMTARSQDVLSS-KM---DCQNNFLIGVLNESEARDLFKKLVGDKIENNDLKSLAMNIVKACRGL 339 (512)
Q Consensus 275 gs~iivTtR~~~v~~~-~~---~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~Gl 339 (512)
+..||.||........ .. .-...+.+++.+.++-.++|+.++......... ....|++.+.|.
T Consensus 270 ~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~--~~~~la~~t~g~ 336 (389)
T PRK03992 270 NVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDV--DLEELAELTEGA 336 (389)
T ss_pred CEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCcC--CHHHHHHHcCCC
Confidence 5677877765433211 11 123578999999999999999887533222211 135667777765
No 69
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.47 E-value=3.1e-06 Score=86.11 Aligned_cols=200 Identities=13% Similarity=0.112 Sum_probs=108.7
Q ss_pred ccCccccccchHHHHHHHHHhcCCCce-EEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEE-eCCCCCHHHHHHHHH
Q 010355 145 IKGYEAFESRMSTLNDVINALKNPDVH-MIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAE-VSQRPDVKKIQGQIA 222 (512)
Q Consensus 145 ~~~~~~~~gR~~~l~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~-~~~~~~~~~ll~~i~ 222 (512)
|.....++|.+..+..|..++.++..+ .+.++|+.|+||||+|..+++...-...+...-|.. ....+..-...+.+.
T Consensus 12 P~~~~eiiGq~~~~~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c~~c~~~~ 91 (397)
T PRK14955 12 PKKFADITAQEHITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGECESCRDFD 91 (397)
T ss_pred CCcHhhccChHHHHHHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCCHHHHHHh
Confidence 344567889999999999988876654 588999999999999999998764211111000100 000111111111111
Q ss_pred HHhCCC-----CCCCCchHHHHHHHHHHh----CCCeEEEEEeCCCCh--hhhhhhCCCC--CCCCeEEEEEe-CCcchh
Q 010355 223 DKLGLK-----FYEESESGRARKLCERLK----KEKKILVILDDIWTN--LDLENVGIPF--GVRGCRVLMTA-RSQDVL 288 (512)
Q Consensus 223 ~~l~~~-----~~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~--~~~~~l~~~~--~~~gs~iivTt-R~~~v~ 288 (512)
...... .........+..+.+.+. .+++-++|+|++... ..++.+.-.+ +.+.+.+|++| +...+.
T Consensus 92 ~~~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~~~kl~ 171 (397)
T PRK14955 92 AGTSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELHKIP 171 (397)
T ss_pred cCCCCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCChHHhH
Confidence 100000 000111222333333332 235668899998643 2333331111 13456666555 333332
Q ss_pred ccccCCccceecCCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChhHHHH
Q 010355 289 SSKMDCQNNFLIGVLNESEARDLFKKLVGDKIENNDLKSLAMNIVKACRGLPIAIVT 345 (512)
Q Consensus 289 ~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~GlPLai~~ 345 (512)
.........+++.+++.++....+...+..... .--.+.+..|+..++|.+--+..
T Consensus 172 ~tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~g~-~i~~~al~~l~~~s~g~lr~a~~ 227 (397)
T PRK14955 172 ATIASRCQRFNFKRIPLEEIQQQLQGICEAEGI-SVDADALQLIGRKAQGSMRDAQS 227 (397)
T ss_pred HHHHHHHHHhhcCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHH
Confidence 212233467899999999999888887642211 11135678999999998764443
No 70
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.46 E-value=7.1e-06 Score=74.55 Aligned_cols=158 Identities=16% Similarity=0.143 Sum_probs=91.0
Q ss_pred HHHHHhcCCCc-eEEEEEcCCCCcHHHHHHHHHHhhhhc--------------------CCCCeEEEEEeCC-CCCHHHH
Q 010355 160 DVINALKNPDV-HMIGAYGMAGVGKTMLVKEVARQAKAD--------------------KLFDEVVYAEVSQ-RPDVKKI 217 (512)
Q Consensus 160 ~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~--------------------~~f~~~~wv~~~~-~~~~~~l 217 (512)
.|.+.+..++. +.+.++|+.|+|||++|+.+....-.. .+.+ ..++.... .... +.
T Consensus 3 ~l~~~i~~~~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d-~~~~~~~~~~~~~-~~ 80 (188)
T TIGR00678 3 QLKRALEKGRLAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPD-LHRLEPEGQSIKV-DQ 80 (188)
T ss_pred HHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCc-EEEeccccCcCCH-HH
Confidence 34555555554 679999999999999999998876432 1111 12222111 1111 11
Q ss_pred HHHHHHHhCCCCCCCCchHHHHHHHHHHhCCCeEEEEEeCCCCh--hhhhhhCCCC--CCCCeEEEEEeCCcc-hhcccc
Q 010355 218 QGQIADKLGLKFYEESESGRARKLCERLKKEKKILVILDDIWTN--LDLENVGIPF--GVRGCRVLMTARSQD-VLSSKM 292 (512)
Q Consensus 218 l~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~--~~~~~l~~~~--~~~gs~iivTtR~~~-v~~~~~ 292 (512)
.+.++..+...+ ..+.+-++|+|++... ...+.+...+ +.+.+.+|++|++.. +.....
T Consensus 81 i~~i~~~~~~~~----------------~~~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~ 144 (188)
T TIGR00678 81 VRELVEFLSRTP----------------QESGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIR 144 (188)
T ss_pred HHHHHHHHccCc----------------ccCCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHH
Confidence 222222221100 0145678999998653 2233331111 234566777776542 222222
Q ss_pred CCccceecCCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChhH
Q 010355 293 DCQNNFLIGVLNESEARDLFKKLVGDKIENNDLKSLAMNIVKACRGLPIA 342 (512)
Q Consensus 293 ~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~GlPLa 342 (512)
.....+.+.+++..+....+.+. + .. .+.+..|+..++|.|..
T Consensus 145 sr~~~~~~~~~~~~~~~~~l~~~-g---i~---~~~~~~i~~~~~g~~r~ 187 (188)
T TIGR00678 145 SRCQVLPFPPLSEEALLQWLIRQ-G---IS---EEAAELLLALAGGSPGA 187 (188)
T ss_pred hhcEEeeCCCCCHHHHHHHHHHc-C---CC---HHHHHHHHHHcCCCccc
Confidence 34468999999999999988876 2 11 35688999999999864
No 71
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.46 E-value=7.5e-06 Score=81.01 Aligned_cols=193 Identities=12% Similarity=0.111 Sum_probs=118.7
Q ss_pred cCccccccchHHHHHHHHHhc----CCCceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCCCHHHHHHHH
Q 010355 146 KGYEAFESRMSTLNDVINALK----NPDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQI 221 (512)
Q Consensus 146 ~~~~~~~gR~~~l~~l~~~L~----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~i 221 (512)
..+..++||+.++..+..|+. .+..+.+-|.|.+|.|||.+...++.+......--.++++++..-.....++..|
T Consensus 147 ~~p~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~kI 226 (529)
T KOG2227|consen 147 APPGTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFKKI 226 (529)
T ss_pred CCCCCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHHHH
Confidence 346678999999999988876 4567889999999999999999999887643222245777777656677777777
Q ss_pred HHHh-CCCCCCCCchHHHHHHHHHHhCC-CeEEEEEeCCCChhh-----hhhhCCCCC-CCCeEEEEEe---------CC
Q 010355 222 ADKL-GLKFYEESESGRARKLCERLKKE-KKILVILDDIWTNLD-----LENVGIPFG-VRGCRVLMTA---------RS 284 (512)
Q Consensus 222 ~~~l-~~~~~~~~~~~~~~~l~~~l~~~-k~~LlVlDdv~~~~~-----~~~l~~~~~-~~gs~iivTt---------R~ 284 (512)
+..+ ..........+....+.....+. +.+|+|+|.++.... +-.+ +.++ -+++++|+.- |.
T Consensus 227 ~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~l-Fewp~lp~sr~iLiGiANslDlTdR~ 305 (529)
T KOG2227|consen 227 FSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTL-FEWPKLPNSRIILIGIANSLDLTDRF 305 (529)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeee-hhcccCCcceeeeeeehhhhhHHHHH
Confidence 7766 11111222233344444445443 489999999865421 1111 2222 4556655433 21
Q ss_pred cchhcc-ccCCccceecCCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCC
Q 010355 285 QDVLSS-KMDCQNNFLIGVLNESEARDLFKKLVGDKIENNDLKSLAMNIVKACRGL 339 (512)
Q Consensus 285 ~~v~~~-~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~Gl 339 (512)
-..... ..-....+..+|-+.++..++|..++........+...+..++++|.|.
T Consensus 306 LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~ 361 (529)
T KOG2227|consen 306 LPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAP 361 (529)
T ss_pred hhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccC
Confidence 111111 1123457888999999999999998864433333333444444555443
No 72
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=98.45 E-value=2.7e-06 Score=93.25 Aligned_cols=159 Identities=19% Similarity=0.247 Sum_probs=94.6
Q ss_pred cCccccccchHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHhhhhcCC---C-CeEEEEEeCCCCCHHHHHHHH
Q 010355 146 KGYEAFESRMSTLNDVINALKNPDVHMIGAYGMAGVGKTMLVKEVARQAKADKL---F-DEVVYAEVSQRPDVKKIQGQI 221 (512)
Q Consensus 146 ~~~~~~~gR~~~l~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~---f-~~~~wv~~~~~~~~~~ll~~i 221 (512)
....+++||+.++.+++..|......-+.++|++|+|||+||+.+++....... + ...+|. + +...++.
T Consensus 179 ~~l~~~igr~~ei~~~~~~L~~~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~-~----~~~~l~a-- 251 (731)
T TIGR02639 179 GKIDPLIGREDELERTIQVLCRRKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYS-L----DMGSLLA-- 251 (731)
T ss_pred CCCCcccCcHHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEE-e----cHHHHhh--
Confidence 345679999999999999998776777889999999999999999998743211 1 233332 1 1111110
Q ss_pred HHHhCCCCCCCCchHHHHHHHHHHhCCCeEEEEEeCCCChh----------hhhhhCCCCCCCC-eEEEEEeCCcch---
Q 010355 222 ADKLGLKFYEESESGRARKLCERLKKEKKILVILDDIWTNL----------DLENVGIPFGVRG-CRVLMTARSQDV--- 287 (512)
Q Consensus 222 ~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~----------~~~~l~~~~~~~g-s~iivTtR~~~v--- 287 (512)
.. .........+..+.+.+...++.+|+||++.... ....+..|.-..| .++|.+|.....
T Consensus 252 --~~---~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~~g~i~~IgaTt~~e~~~~ 326 (731)
T TIGR02639 252 --GT---KYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALSSGKLRCIGSTTYEEYKNH 326 (731)
T ss_pred --hc---cccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHhCCCeEEEEecCHHHHHHH
Confidence 00 0001122334455555544568999999986331 1122222222233 455555543211
Q ss_pred -h--ccccCCccceecCCCCHHHHHHHHHHHh
Q 010355 288 -L--SSKMDCQNNFLIGVLNESEARDLFKKLV 316 (512)
Q Consensus 288 -~--~~~~~~~~~~~l~~L~~~ea~~Lf~~~~ 316 (512)
. .........+.+.+++.++..+++....
T Consensus 327 ~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~ 358 (731)
T TIGR02639 327 FEKDRALSRRFQKIDVGEPSIEETVKILKGLK 358 (731)
T ss_pred hhhhHHHHHhCceEEeCCCCHHHHHHHHHHHH
Confidence 0 1112234578999999999999998654
No 73
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=98.44 E-value=6.6e-06 Score=87.11 Aligned_cols=198 Identities=11% Similarity=0.110 Sum_probs=111.3
Q ss_pred ccCccccccchHHHHHHHHHhcCCCc-eEEEEEcCCCCcHHHHHHHHHHhhhhcCCCC--eEEEEEeCCCCCHHHHHHHH
Q 010355 145 IKGYEAFESRMSTLNDVINALKNPDV-HMIGAYGMAGVGKTMLVKEVARQAKADKLFD--EVVYAEVSQRPDVKKIQGQI 221 (512)
Q Consensus 145 ~~~~~~~~gR~~~l~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~--~~~wv~~~~~~~~~~ll~~i 221 (512)
|.....++|.+..++.|.+++..++. +.+.++|+.|+||||+|+.+++...-..... +..+- .+......+.|
T Consensus 20 P~~f~dliGq~~~v~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~----~cg~c~~C~~i 95 (598)
T PRK09111 20 PQTFDDLIGQEAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTID----LCGVGEHCQAI 95 (598)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccc----cCcccHHHHHH
Confidence 34566789999999999999986654 4789999999999999999998754211110 00000 00000111111
Q ss_pred HHHhCCC-----CCCCCchHHHHHHHHHHh----CCCeEEEEEeCCCChh--hhhhhCCCC--CCCCeEEEEEe-CCcch
Q 010355 222 ADKLGLK-----FYEESESGRARKLCERLK----KEKKILVILDDIWTNL--DLENVGIPF--GVRGCRVLMTA-RSQDV 287 (512)
Q Consensus 222 ~~~l~~~-----~~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~~--~~~~l~~~~--~~~gs~iivTt-R~~~v 287 (512)
....... .......+.+..+.+.+. .+++-++|+|++.... ..+.+.-.+ +..++.+|++| ....+
T Consensus 96 ~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte~~kl 175 (598)
T PRK09111 96 MEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEIRKV 175 (598)
T ss_pred hcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCChhhh
Confidence 1111000 000111222333333332 2355689999996542 233331111 13456666555 33333
Q ss_pred hccccCCccceecCCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChhHHHHHH
Q 010355 288 LSSKMDCQNNFLIGVLNESEARDLFKKLVGDKIENNDLKSLAMNIVKACRGLPIAIVTIA 347 (512)
Q Consensus 288 ~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~GlPLai~~ia 347 (512)
..........+.+.+++..+....+.+.+...... --.+.+..|++.++|.+.-+....
T Consensus 176 l~tI~SRcq~~~f~~l~~~el~~~L~~i~~kegi~-i~~eAl~lIa~~a~Gdlr~al~~L 234 (598)
T PRK09111 176 PVTVLSRCQRFDLRRIEADVLAAHLSRIAAKEGVE-VEDEALALIARAAEGSVRDGLSLL 234 (598)
T ss_pred hHHHHhheeEEEecCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 32223345689999999999999998876422211 113567788999999987665444
No 74
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.44 E-value=7.3e-06 Score=86.31 Aligned_cols=189 Identities=13% Similarity=0.090 Sum_probs=103.9
Q ss_pred ccCccccccchHHHHHHHHHhcCCCce-EEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCCCHHHHHHHHHH
Q 010355 145 IKGYEAFESRMSTLNDVINALKNPDVH-MIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIAD 223 (512)
Q Consensus 145 ~~~~~~~~gR~~~l~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~i~~ 223 (512)
|.....++|.+..++.|..++..++.. .+.++|+.|+||||+|+.+++...-..... + ..++.-...+.|..
T Consensus 9 P~~f~eivGq~~i~~~L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~---~----~pCg~C~~C~~i~~ 81 (584)
T PRK14952 9 PATFAEVVGQEHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARSLNCAQGPT---A----TPCGVCESCVALAP 81 (584)
T ss_pred CCcHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCC---C----CcccccHHHHHhhc
Confidence 345667899999999999999876654 578999999999999999998654211000 0 00000000111100
Q ss_pred HhC-------CCCCCCCchHHHHHHHHHHh----CCCeEEEEEeCCCCh--hhhhhhCCCC--CCCCeEEEEEe-CCcch
Q 010355 224 KLG-------LKFYEESESGRARKLCERLK----KEKKILVILDDIWTN--LDLENVGIPF--GVRGCRVLMTA-RSQDV 287 (512)
Q Consensus 224 ~l~-------~~~~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~--~~~~~l~~~~--~~~gs~iivTt-R~~~v 287 (512)
.-+ +..........+..+.+.+. .+++-++|||++... ...+.+.-.+ ...++.+|++| ....+
T Consensus 82 ~~~~~~dvieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~~kl 161 (584)
T PRK14952 82 NGPGSIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKV 161 (584)
T ss_pred ccCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCChHhh
Confidence 000 00000001122222222221 245668999999743 3333331111 13455555555 43333
Q ss_pred hccccCCccceecCCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChh
Q 010355 288 LSSKMDCQNNFLIGVLNESEARDLFKKLVGDKIENNDLKSLAMNIVKACRGLPI 341 (512)
Q Consensus 288 ~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~GlPL 341 (512)
..........+.+.+++..+....+.+.+......- -...+..|++.++|.+.
T Consensus 162 l~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~egi~i-~~~al~~Ia~~s~GdlR 214 (584)
T PRK14952 162 LPTIRSRTHHYPFRLLPPRTMRALIARICEQEGVVV-DDAVYPLVIRAGGGSPR 214 (584)
T ss_pred HHHHHHhceEEEeeCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHH
Confidence 322234457899999999999988887664222111 13456778888888774
No 75
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=98.42 E-value=5.7e-06 Score=88.26 Aligned_cols=177 Identities=15% Similarity=0.140 Sum_probs=104.0
Q ss_pred ccCccccccchHHHHHHHHHhcCCC-ceEEEEEcCCCCcHHHHHHHHHHhhhhcCC-CC---------------eEEEEE
Q 010355 145 IKGYEAFESRMSTLNDVINALKNPD-VHMIGAYGMAGVGKTMLVKEVARQAKADKL-FD---------------EVVYAE 207 (512)
Q Consensus 145 ~~~~~~~~gR~~~l~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-f~---------------~~~wv~ 207 (512)
|.....++|.+..+..|..++..++ .+.+.++|+.|+||||+|+.++...--... .. .++++.
T Consensus 14 P~~f~dIiGQe~~v~~L~~aI~~~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~~~~~~Dvieid 93 (725)
T PRK07133 14 PKTFDDIVGQDHIVQTLKNIIKSNKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIENVNNSLDIIEMD 93 (725)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHhhcCCCcEEEEe
Confidence 3456678899999999999998655 456789999999999999999876532110 00 011111
Q ss_pred eCCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHh----CCCeEEEEEeCCCCh--hhhhhhCCCC--CCCCeEEE
Q 010355 208 VSQRPDVKKIQGQIADKLGLKFYEESESGRARKLCERLK----KEKKILVILDDIWTN--LDLENVGIPF--GVRGCRVL 279 (512)
Q Consensus 208 ~~~~~~~~~ll~~i~~~l~~~~~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~--~~~~~l~~~~--~~~gs~ii 279 (512)
..... ....+..+.+.+. .+++-++|+|++... ..+..+.-.+ +...+.+|
T Consensus 94 aasn~---------------------~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifI 152 (725)
T PRK07133 94 AASNN---------------------GVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFI 152 (725)
T ss_pred ccccC---------------------CHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEE
Confidence 11111 1122333333332 245679999998643 3343332111 12344544
Q ss_pred -EEeCCcchhccccCCccceecCCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChhHH
Q 010355 280 -MTARSQDVLSSKMDCQNNFLIGVLNESEARDLFKKLVGDKIENNDLKSLAMNIVKACRGLPIAI 343 (512)
Q Consensus 280 -vTtR~~~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~GlPLai 343 (512)
+|++...+..........+.+.+++.++....+...+......- -...+..|++.++|.+.-+
T Consensus 153 LaTte~~KLl~TI~SRcq~ieF~~L~~eeI~~~L~~il~kegI~i-d~eAl~~LA~lS~GslR~A 216 (725)
T PRK07133 153 LATTEVHKIPLTILSRVQRFNFRRISEDEIVSRLEFILEKENISY-EKNALKLIAKLSSGSLRDA 216 (725)
T ss_pred EEcCChhhhhHHHHhhceeEEccCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHH
Confidence 44444444322234456899999999999988887653221111 1345778899998876533
No 76
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.41 E-value=1.3e-05 Score=80.88 Aligned_cols=181 Identities=12% Similarity=0.128 Sum_probs=103.8
Q ss_pred ccCccccccchHHHHHHHHHhcCCCc-eEEEEEcCCCCcHHHHHHHHHHhhhhc------CCCCe-EEEEEeCCCCCHHH
Q 010355 145 IKGYEAFESRMSTLNDVINALKNPDV-HMIGAYGMAGVGKTMLVKEVARQAKAD------KLFDE-VVYAEVSQRPDVKK 216 (512)
Q Consensus 145 ~~~~~~~~gR~~~l~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~------~~f~~-~~wv~~~~~~~~~~ 216 (512)
|.....++|.+..++.+.+++..+.. +.+.++|++|+||||+|+.+++..... ..|.. ++.+..........
T Consensus 13 P~~~~~iig~~~~~~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 92 (367)
T PRK14970 13 PQTFDDVVGQSHITNTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDAASNNSVDD 92 (367)
T ss_pred CCcHHhcCCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEeccccCCCHHH
Confidence 34556788999999999999986654 588899999999999999998875421 11211 11121111111211
Q ss_pred HHHHHHHHhCCCCCCCCchHHHHHHHHHHhCCCeEEEEEeCCCCh--hhhhhhCC--CCCCCCeEEEEEeCC-cchhccc
Q 010355 217 IQGQIADKLGLKFYEESESGRARKLCERLKKEKKILVILDDIWTN--LDLENVGI--PFGVRGCRVLMTARS-QDVLSSK 291 (512)
Q Consensus 217 ll~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~--~~~~~l~~--~~~~~gs~iivTtR~-~~v~~~~ 291 (512)
.+.++..+...+ . .+++-++|+|++... ..+..+.. ..+...+.+|++|.. ..+....
T Consensus 93 -i~~l~~~~~~~p---------------~-~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~~~l 155 (367)
T PRK14970 93 -IRNLIDQVRIPP---------------Q-TGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIPTI 155 (367)
T ss_pred -HHHHHHHHhhcc---------------c-cCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCCHHH
Confidence 222222221100 0 134568999998643 22333311 111334555555533 2222222
Q ss_pred cCCccceecCCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChhHH
Q 010355 292 MDCQNNFLIGVLNESEARDLFKKLVGDKIENNDLKSLAMNIVKACRGLPIAI 343 (512)
Q Consensus 292 ~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~GlPLai 343 (512)
......+++.+++..+....+...+...... --.+.+..|+..++|.+-.+
T Consensus 156 ~sr~~~v~~~~~~~~~l~~~l~~~~~~~g~~-i~~~al~~l~~~~~gdlr~~ 206 (367)
T PRK14970 156 LSRCQIFDFKRITIKDIKEHLAGIAVKEGIK-FEDDALHIIAQKADGALRDA 206 (367)
T ss_pred HhcceeEecCCccHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHhCCCCHHHH
Confidence 2334578999999999998888766422211 11356778888999876644
No 77
>PRK05642 DNA replication initiation factor; Validated
Probab=98.40 E-value=5.2e-06 Score=78.06 Aligned_cols=153 Identities=18% Similarity=0.203 Sum_probs=92.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHhCCC
Q 010355 170 VHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIADKLGLKFYEESESGRARKLCERLKKEK 249 (512)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k 249 (512)
...+.|+|.+|+|||.|++.+++....+ -..++|++... +... ...+.+.+.. -
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~~~~--~~~v~y~~~~~------~~~~-----------------~~~~~~~~~~-~ 98 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRFEQR--GEPAVYLPLAE------LLDR-----------------GPELLDNLEQ-Y 98 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhC--CCcEEEeeHHH------HHhh-----------------hHHHHHhhhh-C
Confidence 3678999999999999999999876532 34567776432 2111 1123334432 1
Q ss_pred eEEEEEeCCCCh---hhhhh-hCCCC---CCCCeEEEEEeCCcchhc--------cccCCccceecCCCCHHHHHHHHHH
Q 010355 250 KILVILDDIWTN---LDLEN-VGIPF---GVRGCRVLMTARSQDVLS--------SKMDCQNNFLIGVLNESEARDLFKK 314 (512)
Q Consensus 250 ~~LlVlDdv~~~---~~~~~-l~~~~---~~~gs~iivTtR~~~v~~--------~~~~~~~~~~l~~L~~~ea~~Lf~~ 314 (512)
=+||+||+... ..|.. +...+ ...|..+|+|++...... .......++.+.+++.++-..++.+
T Consensus 99 -d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~ 177 (234)
T PRK05642 99 -ELVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQL 177 (234)
T ss_pred -CEEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHHH
Confidence 26889999632 23332 21111 245778899887643211 1122336788999999999999986
Q ss_pred HhCCCCCCchhHHHHHHHHHHcCCChhHHHHHHHHh
Q 010355 315 LVGDKIENNDLKSLAMNIVKACRGLPIAIVTIARAL 350 (512)
Q Consensus 315 ~~~~~~~~~~~~~~~~~I~~~~~GlPLai~~ia~~L 350 (512)
++..... .--.++..-|++.+.|..-.+..+-..|
T Consensus 178 ka~~~~~-~l~~ev~~~L~~~~~~d~r~l~~~l~~l 212 (234)
T PRK05642 178 RASRRGL-HLTDEVGHFILTRGTRSMSALFDLLERL 212 (234)
T ss_pred HHHHcCC-CCCHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 6532211 1114677888888888766665555444
No 78
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.38 E-value=1.9e-05 Score=81.97 Aligned_cols=178 Identities=13% Similarity=0.175 Sum_probs=104.5
Q ss_pred cCccccccchHHHHHHHHHhcCCCc-eEEEEEcCCCCcHHHHHHHHHHhhhhc---C----------------CCCeEEE
Q 010355 146 KGYEAFESRMSTLNDVINALKNPDV-HMIGAYGMAGVGKTMLVKEVARQAKAD---K----------------LFDEVVY 205 (512)
Q Consensus 146 ~~~~~~~gR~~~l~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~---~----------------~f~~~~w 205 (512)
.....++|.+..+..|..++..+.. +.+.++|+.|+||||+|+.++....-. . .|..+++
T Consensus 13 ~~f~diiGq~~i~~~L~~~i~~~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d~~e 92 (486)
T PRK14953 13 KFFKEVIGQEIVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPDLIE 92 (486)
T ss_pred CcHHHccChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCcEEE
Confidence 4456788999999999999986554 556789999999999999998865310 0 0111222
Q ss_pred EEeCCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHh----CCCeEEEEEeCCCCh--hhhhhh----CCCCCCCC
Q 010355 206 AEVSQRPDVKKIQGQIADKLGLKFYEESESGRARKLCERLK----KEKKILVILDDIWTN--LDLENV----GIPFGVRG 275 (512)
Q Consensus 206 v~~~~~~~~~~ll~~i~~~l~~~~~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~--~~~~~l----~~~~~~~g 275 (512)
+..+..... ..+..+...+. .+++-++|+|++... ...+.+ ..| .+.
T Consensus 93 idaas~~gv---------------------d~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEep--p~~ 149 (486)
T PRK14953 93 IDAASNRGI---------------------DDIRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEP--PPR 149 (486)
T ss_pred EeCccCCCH---------------------HHHHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcC--CCC
Confidence 222211111 11222222221 246679999998644 223332 222 334
Q ss_pred eEEEEEe-CCcchhccccCCccceecCCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChhHHHHHH
Q 010355 276 CRVLMTA-RSQDVLSSKMDCQNNFLIGVLNESEARDLFKKLVGDKIENNDLKSLAMNIVKACRGLPIAIVTIA 347 (512)
Q Consensus 276 s~iivTt-R~~~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~GlPLai~~ia 347 (512)
+.+|++| +...+..........+.+.+++.++....+.+.+...... --...+..|+..++|.+..+..+.
T Consensus 150 ~v~Il~tt~~~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~egi~-id~~al~~La~~s~G~lr~al~~L 221 (486)
T PRK14953 150 TIFILCTTEYDKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKIE-YEEKALDLLAQASEGGMRDAASLL 221 (486)
T ss_pred eEEEEEECCHHHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 5555544 3333322122334578999999999998888876422211 113466788899999776544443
No 79
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.37 E-value=2.5e-06 Score=79.26 Aligned_cols=163 Identities=18% Similarity=0.198 Sum_probs=96.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHhCCC
Q 010355 170 VHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIADKLGLKFYEESESGRARKLCERLKKEK 249 (512)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k 249 (512)
...+.|+|..|+|||.|.+++++.......-..++|++ ..++...+...+.. .....++..+. .
T Consensus 34 ~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~------~~~f~~~~~~~~~~--------~~~~~~~~~~~--~ 97 (219)
T PF00308_consen 34 YNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLS------AEEFIREFADALRD--------GEIEEFKDRLR--S 97 (219)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEE------HHHHHHHHHHHHHT--------TSHHHHHHHHC--T
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHhccccccceeec------HHHHHHHHHHHHHc--------ccchhhhhhhh--c
Confidence 45689999999999999999999876432333566764 34555555554422 11334555554 3
Q ss_pred eEEEEEeCCCChh---hhhhh-C---CCCCCCCeEEEEEeCCcchh--------ccccCCccceecCCCCHHHHHHHHHH
Q 010355 250 KILVILDDIWTNL---DLENV-G---IPFGVRGCRVLMTARSQDVL--------SSKMDCQNNFLIGVLNESEARDLFKK 314 (512)
Q Consensus 250 ~~LlVlDdv~~~~---~~~~l-~---~~~~~~gs~iivTtR~~~v~--------~~~~~~~~~~~l~~L~~~ea~~Lf~~ 314 (512)
-=+|+|||+.... .|... . ..+...|.+||+|++..... ...+.....+++.+++.+....++.+
T Consensus 98 ~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r~~il~~ 177 (219)
T PF00308_consen 98 ADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPDDEDRRRILQK 177 (219)
T ss_dssp SSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----HHHHHHHHHH
T ss_pred CCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhhhHhhcchhhcCCCCHHHHHHHHHH
Confidence 4689999996542 22221 1 11114577899999765321 11234456899999999999999998
Q ss_pred HhCCCCCCchhHHHHHHHHHHcCCChhHHHHHHHH
Q 010355 315 LVGDKIENNDLKSLAMNIVKACRGLPIAIVTIARA 349 (512)
Q Consensus 315 ~~~~~~~~~~~~~~~~~I~~~~~GlPLai~~ia~~ 349 (512)
.+...... --++++.-|++.+.+..-.+..+-..
T Consensus 178 ~a~~~~~~-l~~~v~~~l~~~~~~~~r~L~~~l~~ 211 (219)
T PF00308_consen 178 KAKERGIE-LPEEVIEYLARRFRRDVRELEGALNR 211 (219)
T ss_dssp HHHHTT---S-HHHHHHHHHHTTSSHHHHHHHHHH
T ss_pred HHHHhCCC-CcHHHHHHHHHhhcCCHHHHHHHHHH
Confidence 87522211 12457777888877766655544443
No 80
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.37 E-value=1.4e-06 Score=85.79 Aligned_cols=100 Identities=15% Similarity=0.203 Sum_probs=65.5
Q ss_pred HHHHhc-CCCceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCC--CHHHHHHHHHHHhCCCCCCCCchH-
Q 010355 161 VINALK-NPDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRP--DVKKIQGQIADKLGLKFYEESESG- 236 (512)
Q Consensus 161 l~~~L~-~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~--~~~~ll~~i~~~l~~~~~~~~~~~- 236 (512)
+++++. -+.-...+|+|++|+|||||++.+++....+ +|+.++||.+.... ...++++.|...+-......+...
T Consensus 159 vID~l~PIGkGQR~lIvgppGvGKTTLaK~Ian~I~~n-hFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d~~~~~~ 237 (416)
T PRK09376 159 IIDLIAPIGKGQRGLIVAPPKAGKTVLLQNIANSITTN-HPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFDEPAERH 237 (416)
T ss_pred eeeeecccccCceEEEeCCCCCChhHHHHHHHHHHHhh-cCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCCCCHHHH
Confidence 344444 1234567899999999999999999998764 89999999998876 677777777532211111111111
Q ss_pred -----HHHHHHHHH-hCCCeEEEEEeCCCCh
Q 010355 237 -----RARKLCERL-KKEKKILVILDDIWTN 261 (512)
Q Consensus 237 -----~~~~l~~~l-~~~k~~LlVlDdv~~~ 261 (512)
.+....+++ ..++++||++|++...
T Consensus 238 ~~~a~~~ie~Ae~~~e~G~dVlL~iDsItR~ 268 (416)
T PRK09376 238 VQVAEMVIEKAKRLVEHGKDVVILLDSITRL 268 (416)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEEEChHHH
Confidence 111222232 3579999999999643
No 81
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.36 E-value=1.3e-05 Score=84.94 Aligned_cols=197 Identities=13% Similarity=0.142 Sum_probs=106.5
Q ss_pred ccCccccccchHHHHHHHHHhcCCCc-eEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEE-eCCCCCHHHHHHHHH
Q 010355 145 IKGYEAFESRMSTLNDVINALKNPDV-HMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAE-VSQRPDVKKIQGQIA 222 (512)
Q Consensus 145 ~~~~~~~~gR~~~l~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~-~~~~~~~~~ll~~i~ 222 (512)
|.....++|.+..+..|.+++..++. +.+.++|+.|+||||+|+.+++..--...+....|.. ....+..-...+.+.
T Consensus 12 P~~f~eivGQe~i~~~L~~~i~~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C~sC~~~~ 91 (620)
T PRK14954 12 PSKFADITAQEHITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGECESCRDFD 91 (620)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccCHHHHHHh
Confidence 34456789999999999998886655 5588999999999999999998764211111001110 001111111111111
Q ss_pred HHhCCC-----CCCCCchHHHHHHHHHHh----CCCeEEEEEeCCCChh--hhhhhCCCCC--CCCeEEEEEe-CCcchh
Q 010355 223 DKLGLK-----FYEESESGRARKLCERLK----KEKKILVILDDIWTNL--DLENVGIPFG--VRGCRVLMTA-RSQDVL 288 (512)
Q Consensus 223 ~~l~~~-----~~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~~--~~~~l~~~~~--~~gs~iivTt-R~~~v~ 288 (512)
..-... .......+.+..+.+.+. .+++-++|+|++.... ..+.+.-.+. ...+.+|++| +...+.
T Consensus 92 ~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~~kLl 171 (620)
T PRK14954 92 AGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELHKIP 171 (620)
T ss_pred ccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhh
Confidence 100000 000111222333333331 2345688999986542 2333311111 2345555544 333332
Q ss_pred ccccCCccceecCCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChhH
Q 010355 289 SSKMDCQNNFLIGVLNESEARDLFKKLVGDKIENNDLKSLAMNIVKACRGLPIA 342 (512)
Q Consensus 289 ~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~GlPLa 342 (512)
.........+++.+++..+....+.+.+...... --.+.+..|+..++|.+--
T Consensus 172 ~TI~SRc~~vef~~l~~~ei~~~L~~i~~~egi~-I~~eal~~La~~s~Gdlr~ 224 (620)
T PRK14954 172 ATIASRCQRFNFKRIPLDEIQSQLQMICRAEGIQ-IDADALQLIARKAQGSMRD 224 (620)
T ss_pred HHHHhhceEEecCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHhCCCHHH
Confidence 2223445789999999999988888766422110 1135678899999996553
No 82
>CHL00095 clpC Clp protease ATP binding subunit
Probab=98.35 E-value=4.4e-06 Score=92.78 Aligned_cols=156 Identities=17% Similarity=0.272 Sum_probs=93.3
Q ss_pred ccccccchHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHhhhhcCC---C-CeEEEEEeCCCCCHHHHHHHHHH
Q 010355 148 YEAFESRMSTLNDVINALKNPDVHMIGAYGMAGVGKTMLVKEVARQAKADKL---F-DEVVYAEVSQRPDVKKIQGQIAD 223 (512)
Q Consensus 148 ~~~~~gR~~~l~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~---f-~~~~wv~~~~~~~~~~ll~~i~~ 223 (512)
..+++||++++++++..|......-+.++|++|+|||++|..++........ . ...+|. + +...++ .
T Consensus 178 ~~~~igr~~ei~~~~~~L~r~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~-l----~~~~l~----a 248 (821)
T CHL00095 178 LDPVIGREKEIERVIQILGRRTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVIT-L----DIGLLL----A 248 (821)
T ss_pred CCCCCCcHHHHHHHHHHHcccccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEE-e----eHHHHh----c
Confidence 4678999999999999998766667789999999999999999988653211 1 233442 1 111111 1
Q ss_pred HhCCCCCCCCchHHHHHHHHHHhCCCeEEEEEeCCCChh---------hhhhhCCCCC-CCCeEEEEEeCCcchh-----
Q 010355 224 KLGLKFYEESESGRARKLCERLKKEKKILVILDDIWTNL---------DLENVGIPFG-VRGCRVLMTARSQDVL----- 288 (512)
Q Consensus 224 ~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~---------~~~~l~~~~~-~~gs~iivTtR~~~v~----- 288 (512)
|.. ........+..+.+.+...++++|++|++.... ....+..|.- ....++|.+|......
T Consensus 249 --g~~-~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~rg~l~~IgaTt~~ey~~~ie~ 325 (821)
T CHL00095 249 --GTK-YRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALARGELQCIGATTLDEYRKHIEK 325 (821)
T ss_pred --cCC-CccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHhCCCcEEEEeCCHHHHHHHHhc
Confidence 111 111122344555555555578999999995331 1122222222 2235566665544321
Q ss_pred -ccccCCccceecCCCCHHHHHHHHHHH
Q 010355 289 -SSKMDCQNNFLIGVLNESEARDLFKKL 315 (512)
Q Consensus 289 -~~~~~~~~~~~l~~L~~~ea~~Lf~~~ 315 (512)
.........+.+...+.++...++...
T Consensus 326 D~aL~rRf~~I~v~ep~~~e~~aILr~l 353 (821)
T CHL00095 326 DPALERRFQPVYVGEPSVEETIEILFGL 353 (821)
T ss_pred CHHHHhcceEEecCCCCHHHHHHHHHHH
Confidence 112233456788889999988887643
No 83
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.34 E-value=1.6e-05 Score=84.90 Aligned_cols=196 Identities=13% Similarity=0.122 Sum_probs=110.5
Q ss_pred ccCccccccchHHHHHHHHHhcCCCc-eEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCCCHHHHHHHHHH
Q 010355 145 IKGYEAFESRMSTLNDVINALKNPDV-HMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIAD 223 (512)
Q Consensus 145 ~~~~~~~~gR~~~l~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~i~~ 223 (512)
|.....++|.+..+..|..++..+.. +.+.++|+.|+||||+|+.+++...-...+. -...++.....+.|..
T Consensus 12 P~~~~eiiGq~~~~~~L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~------~~~~c~~c~~c~~i~~ 85 (585)
T PRK14950 12 SQTFAELVGQEHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDP------KGRPCGTCEMCRAIAE 85 (585)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCC------CCCCCccCHHHHHHhc
Confidence 34456789999999999888886554 5678999999999999999998764211100 0011111222333322
Q ss_pred HhCCCC---C--CCCchHHHHHHHHHHh----CCCeEEEEEeCCCCh--hhhhhhCCCCC--CCCeEEEEEeCCc-chhc
Q 010355 224 KLGLKF---Y--EESESGRARKLCERLK----KEKKILVILDDIWTN--LDLENVGIPFG--VRGCRVLMTARSQ-DVLS 289 (512)
Q Consensus 224 ~l~~~~---~--~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~--~~~~~l~~~~~--~~gs~iivTtR~~-~v~~ 289 (512)
...... . .......+..+.+.+. .+++-++|||++... ...+.+...+. ...+.+|++|... .+..
T Consensus 86 ~~~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~kll~ 165 (585)
T PRK14950 86 GSAVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKVPA 165 (585)
T ss_pred CCCCeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhhhhH
Confidence 221110 0 0111122233333222 145678999998643 33333311111 3456666665432 2322
Q ss_pred cccCCccceecCCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChhHHHHHH
Q 010355 290 SKMDCQNNFLIGVLNESEARDLFKKLVGDKIENNDLKSLAMNIVKACRGLPIAIVTIA 347 (512)
Q Consensus 290 ~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~GlPLai~~ia 347 (512)
........+.+.+++..+....+.+.+...... --.+.+..|++.++|.+..+....
T Consensus 166 tI~SR~~~i~f~~l~~~el~~~L~~~a~~egl~-i~~eal~~La~~s~Gdlr~al~~L 222 (585)
T PRK14950 166 TILSRCQRFDFHRHSVADMAAHLRKIAAAEGIN-LEPGALEAIARAATGSMRDAENLL 222 (585)
T ss_pred HHHhccceeeCCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 222334678899999999998888876432211 113567889999999887554443
No 84
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=98.34 E-value=1.8e-05 Score=81.75 Aligned_cols=159 Identities=17% Similarity=0.285 Sum_probs=89.7
Q ss_pred CccccccchHHHHHHHHHhc-------------CCCceEEEEEcCCCCcHHHHHHHHHHhhhhcC---CCCeEEEEEeCC
Q 010355 147 GYEAFESRMSTLNDVINALK-------------NPDVHMIGAYGMAGVGKTMLVKEVARQAKADK---LFDEVVYAEVSQ 210 (512)
Q Consensus 147 ~~~~~~gR~~~l~~l~~~L~-------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~---~f~~~~wv~~~~ 210 (512)
....+.|.+..+++|...+. -...+-+.|+|++|+|||++|+.+++.....- .+....|+++..
T Consensus 180 ~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v~~ 259 (512)
T TIGR03689 180 TYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLNIKG 259 (512)
T ss_pred CHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEeccc
Confidence 34556788888888777643 12346789999999999999999999875321 112344554433
Q ss_pred CCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHH----HhCCCeEEEEEeCCCChh---------h-----hhhhCCCC-
Q 010355 211 RPDVKKIQGQIADKLGLKFYEESESGRARKLCER----LKKEKKILVILDDIWTNL---------D-----LENVGIPF- 271 (512)
Q Consensus 211 ~~~~~~ll~~i~~~l~~~~~~~~~~~~~~~l~~~----l~~~k~~LlVlDdv~~~~---------~-----~~~l~~~~- 271 (512)
. .++... ++ .....+..+++. ...+++++|+||+++... . +..+...+
T Consensus 260 ~----eLl~ky---vG------ete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LD 326 (512)
T TIGR03689 260 P----ELLNKY---VG------ETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELD 326 (512)
T ss_pred h----hhcccc---cc------hHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhc
Confidence 1 111100 00 011112222222 223578999999996431 0 11221111
Q ss_pred --C-CCCeEEEEEeCCcchhc-ccc---CCccceecCCCCHHHHHHHHHHHhCC
Q 010355 272 --G-VRGCRVLMTARSQDVLS-SKM---DCQNNFLIGVLNESEARDLFKKLVGD 318 (512)
Q Consensus 272 --~-~~gs~iivTtR~~~v~~-~~~---~~~~~~~l~~L~~~ea~~Lf~~~~~~ 318 (512)
. ..+..||.||....... ... .-...|.+++.+.++..++|..++..
T Consensus 327 gl~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~ 380 (512)
T TIGR03689 327 GVESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTD 380 (512)
T ss_pred ccccCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhc
Confidence 1 23455666665443321 111 22346899999999999999998753
No 85
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=98.32 E-value=2.3e-05 Score=80.78 Aligned_cols=178 Identities=13% Similarity=0.175 Sum_probs=102.5
Q ss_pred ccCccccccchHHHHHHHHHhcCCCc-eEEEEEcCCCCcHHHHHHHHHHhhhhcC---------------------CCCe
Q 010355 145 IKGYEAFESRMSTLNDVINALKNPDV-HMIGAYGMAGVGKTMLVKEVARQAKADK---------------------LFDE 202 (512)
Q Consensus 145 ~~~~~~~~gR~~~l~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~---------------------~f~~ 202 (512)
|.....++|.+..+..|..++..+.. +.+.++|+.|+||||+|+.+++..--.. +++
T Consensus 13 P~~~~diiGq~~~v~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d- 91 (451)
T PRK06305 13 PQTFSEILGQDAVVAVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLD- 91 (451)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCc-
Confidence 34456788999999999999886654 6688999999999999999988753210 111
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHhCCCeEEEEEeCCCCh--hhhhhhCCCC--CCCCeEE
Q 010355 203 VVYAEVSQRPDVKKIQGQIADKLGLKFYEESESGRARKLCERLKKEKKILVILDDIWTN--LDLENVGIPF--GVRGCRV 278 (512)
Q Consensus 203 ~~wv~~~~~~~~~~ll~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~--~~~~~l~~~~--~~~gs~i 278 (512)
.+++.......... .+.+...+.. .-..+++-++|+|++... ...+.+.-.+ +..++.+
T Consensus 92 ~~~i~g~~~~gid~-ir~i~~~l~~----------------~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~~~ 154 (451)
T PRK06305 92 VLEIDGASHRGIED-IRQINETVLF----------------TPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVKF 154 (451)
T ss_pred eEEeeccccCCHHH-HHHHHHHHHh----------------hhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCceE
Confidence 11221111111111 1112111110 001245678899998643 2222221111 1345666
Q ss_pred EEEeCC-cchhccccCCccceecCCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChh
Q 010355 279 LMTARS-QDVLSSKMDCQNNFLIGVLNESEARDLFKKLVGDKIENNDLKSLAMNIVKACRGLPI 341 (512)
Q Consensus 279 ivTtR~-~~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~GlPL 341 (512)
|++|.. ..+..........+++.+++.++....+.+.+...... --.+.+..|++.++|.+.
T Consensus 155 Il~t~~~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg~~-i~~~al~~L~~~s~gdlr 217 (451)
T PRK06305 155 FLATTEIHKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEGIE-TSREALLPIARAAQGSLR 217 (451)
T ss_pred EEEeCChHhcchHHHHhceEEeCCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHH
Confidence 666643 22222223345689999999999998888776422111 113567789999999764
No 86
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=98.32 E-value=2.7e-05 Score=75.23 Aligned_cols=196 Identities=16% Similarity=0.163 Sum_probs=119.3
Q ss_pred ccccccchHHHHHHHHHhcCCC--c-eEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHH
Q 010355 148 YEAFESRMSTLNDVINALKNPD--V-HMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIADK 224 (512)
Q Consensus 148 ~~~~~gR~~~l~~l~~~L~~~~--~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~i~~~ 224 (512)
.+.|.+|+.++..+...+.+.. . ..|.|+|-+|.|||.+++++.+.... ..+|+++-..++.+-++..|+.+
T Consensus 5 ~~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~-----~~vw~n~~ecft~~~lle~IL~~ 79 (438)
T KOG2543|consen 5 EPNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKLNL-----ENVWLNCVECFTYAILLEKILNK 79 (438)
T ss_pred ccCccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhcCC-----cceeeehHHhccHHHHHHHHHHH
Confidence 3467799999999999888443 3 44589999999999999999987732 24799999999999999999999
Q ss_pred hCC-CCCCCCc---hHHHHHHHHHHh-------CCCeEEEEEeCCCChhhhhhhCC--------CCCCCCeEEEEEeCCc
Q 010355 225 LGL-KFYEESE---SGRARKLCERLK-------KEKKILVILDDIWTNLDLENVGI--------PFGVRGCRVLMTARSQ 285 (512)
Q Consensus 225 l~~-~~~~~~~---~~~~~~l~~~l~-------~~k~~LlVlDdv~~~~~~~~l~~--------~~~~~gs~iivTtR~~ 285 (512)
++. +.+.... .+........+. .++.++|||||+....+.....+ ..+.+ ..+|+++-..
T Consensus 80 ~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~~~-~i~iils~~~ 158 (438)
T KOG2543|consen 80 SQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDAILLQCLFRLYELLNEP-TIVIILSAPS 158 (438)
T ss_pred hccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccchHHHHHHHHHHHHhCCC-ceEEEEeccc
Confidence 862 2221111 122222222221 24689999999976544333211 11123 3344444332
Q ss_pred chh--ccccC--CccceecCCCCHHHHHHHHHHHhCCCCC----CchhHHHHHHHHHHcCCChhHHHHHHHHh
Q 010355 286 DVL--SSKMD--CQNNFLIGVLNESEARDLFKKLVGDKIE----NNDLKSLAMNIVKACRGLPIAIVTIARAL 350 (512)
Q Consensus 286 ~v~--~~~~~--~~~~~~l~~L~~~ea~~Lf~~~~~~~~~----~~~~~~~~~~I~~~~~GlPLai~~ia~~L 350 (512)
... ...++ ...++..+.-+.++...+|.+...+... ..-+.-+..-....|+ -|-++..++...
T Consensus 159 ~e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~~p~~r~~~~ya~fl~v~l~vF~~~cr-d~~eL~~~~~~~ 230 (438)
T KOG2543|consen 159 CEKQYLINTGTLEIVVLHFPQYSVEETQVILSRDNPGKRKLDVYAQFLHVLLQVFYMACR-DVNELRSLISLA 230 (438)
T ss_pred cHHHhhcccCCCCceEEecCCCCHHHHHHHHhcCCccccchHHHHHHHHHHHHHHHHHhC-CHHHHHHHHHHH
Confidence 211 11122 2346677788889998888765432111 1111223445567777 666666666554
No 87
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=98.31 E-value=3.3e-05 Score=71.22 Aligned_cols=53 Identities=17% Similarity=0.211 Sum_probs=41.9
Q ss_pred ccCccccccchHHHHHHHHH----hcCCCceEEEEEcCCCCcHHHHHHHHHHhhhhc
Q 010355 145 IKGYEAFESRMSTLNDVINA----LKNPDVHMIGAYGMAGVGKTMLVKEVARQAKAD 197 (512)
Q Consensus 145 ~~~~~~~~gR~~~l~~l~~~----L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~ 197 (512)
+.....++|-+.+.+.|++. +......-+.+||..|+|||+|++.+.+....+
T Consensus 23 ~~~l~~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y~~~ 79 (249)
T PF05673_consen 23 PIRLDDLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEYADQ 79 (249)
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHHhhc
Confidence 45566788988888877753 335566778899999999999999999887754
No 88
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=98.30 E-value=3.6e-05 Score=80.00 Aligned_cols=182 Identities=12% Similarity=0.140 Sum_probs=107.7
Q ss_pred ccCccccccchHHHHHHHHHhcCCCce-EEEEEcCCCCcHHHHHHHHHHhhhhcCC------------------C-CeEE
Q 010355 145 IKGYEAFESRMSTLNDVINALKNPDVH-MIGAYGMAGVGKTMLVKEVARQAKADKL------------------F-DEVV 204 (512)
Q Consensus 145 ~~~~~~~~gR~~~l~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~------------------f-~~~~ 204 (512)
|.....++|.+.....|..++..+..+ ++.++|+.|+||||+|+.+++..--... + ..++
T Consensus 10 P~~fdeiiGqe~v~~~L~~~I~~grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~dv~ 89 (535)
T PRK08451 10 PKHFDELIGQESVSKTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHIDII 89 (535)
T ss_pred CCCHHHccCcHHHHHHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCeEE
Confidence 345667899999999999988866654 6689999999999999999887531110 0 0122
Q ss_pred EEEeCCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHhCCCeEEEEEeCCCCh--hhhhhh----CCCCCCCCeEE
Q 010355 205 YAEVSQRPDVKKIQGQIADKLGLKFYEESESGRARKLCERLKKEKKILVILDDIWTN--LDLENV----GIPFGVRGCRV 278 (512)
Q Consensus 205 wv~~~~~~~~~~ll~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~--~~~~~l----~~~~~~~gs~i 278 (512)
.+..........+. .++..+...+ ..+++-++|+|++... ...+.+ -.| .+.+++
T Consensus 90 eldaas~~gId~IR-elie~~~~~P----------------~~~~~KVvIIDEad~Lt~~A~NALLK~LEEp--p~~t~F 150 (535)
T PRK08451 90 EMDAASNRGIDDIR-ELIEQTKYKP----------------SMARFKIFIIDEVHMLTKEAFNALLKTLEEP--PSYVKF 150 (535)
T ss_pred EeccccccCHHHHH-HHHHHHhhCc----------------ccCCeEEEEEECcccCCHHHHHHHHHHHhhc--CCceEE
Confidence 22222111222211 1211111000 0135668999999654 223332 222 355777
Q ss_pred EEEeCCcc-hhccccCCccceecCCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChhHHHHH
Q 010355 279 LMTARSQD-VLSSKMDCQNNFLIGVLNESEARDLFKKLVGDKIENNDLKSLAMNIVKACRGLPIAIVTI 346 (512)
Q Consensus 279 ivTtR~~~-v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~GlPLai~~i 346 (512)
|++|.... +..........+++.+++.++....+.+.+...... --.+.+..|++.++|.+.-+..+
T Consensus 151 IL~ttd~~kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi~-i~~~Al~~Ia~~s~GdlR~alnl 218 (535)
T PRK08451 151 ILATTDPLKLPATILSRTQHFRFKQIPQNSIISHLKTILEKEGVS-YEPEALEILARSGNGSLRDTLTL 218 (535)
T ss_pred EEEECChhhCchHHHhhceeEEcCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCcHHHHHHH
Confidence 77665532 222223345789999999999999988776432211 11356778999999988554444
No 89
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.30 E-value=3.1e-05 Score=82.60 Aligned_cols=180 Identities=11% Similarity=0.143 Sum_probs=106.9
Q ss_pred cCccccccchHHHHHHHHHhcCCCc-eEEEEEcCCCCcHHHHHHHHHHhhhhc---------------------CCCCeE
Q 010355 146 KGYEAFESRMSTLNDVINALKNPDV-HMIGAYGMAGVGKTMLVKEVARQAKAD---------------------KLFDEV 203 (512)
Q Consensus 146 ~~~~~~~gR~~~l~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~---------------------~~f~~~ 203 (512)
.....++|....+..|..++..+.. +.+.++|+.|+||||+|+.++....-. .+|+ +
T Consensus 14 ~~f~~viGq~~~~~~L~~~i~~~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n-~ 92 (614)
T PRK14971 14 STFESVVGQEALTTTLKNAIATNKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYN-I 92 (614)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCc-e
Confidence 4456788999999999999987665 558899999999999999988865311 1222 2
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHhCCCeEEEEEeCCCCh--hhhhhhCCCC--CCCCeEEE
Q 010355 204 VYAEVSQRPDVKKIQGQIADKLGLKFYEESESGRARKLCERLKKEKKILVILDDIWTN--LDLENVGIPF--GVRGCRVL 279 (512)
Q Consensus 204 ~wv~~~~~~~~~~ll~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~--~~~~~l~~~~--~~~gs~ii 279 (512)
..+..........+ +.++.++...+ ..+++-++|+|++... ..++.+.-.+ +..++.+|
T Consensus 93 ~~ld~~~~~~vd~I-r~li~~~~~~P----------------~~~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~tifI 155 (614)
T PRK14971 93 HELDAASNNSVDDI-RNLIEQVRIPP----------------QIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAIFI 155 (614)
T ss_pred EEecccccCCHHHH-HHHHHHHhhCc----------------ccCCcEEEEEECcccCCHHHHHHHHHHHhCCCCCeEEE
Confidence 22232222222221 22222221110 0134568899998654 2333332111 13456665
Q ss_pred EEe-CCcchhccccCCccceecCCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChhHHH
Q 010355 280 MTA-RSQDVLSSKMDCQNNFLIGVLNESEARDLFKKLVGDKIENNDLKSLAMNIVKACRGLPIAIV 344 (512)
Q Consensus 280 vTt-R~~~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~GlPLai~ 344 (512)
++| ....+..........+.+.+++.++....+.+.+...... --...+..|+..++|.+--+.
T Consensus 156 L~tt~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~egi~-i~~~al~~La~~s~gdlr~al 220 (614)
T PRK14971 156 LATTEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGIT-AEPEALNVIAQKADGGMRDAL 220 (614)
T ss_pred EEeCCchhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHH
Confidence 555 4444433334455789999999999999998776432211 113467789999999765443
No 90
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=98.29 E-value=7.3e-06 Score=81.05 Aligned_cols=147 Identities=14% Similarity=0.168 Sum_probs=85.1
Q ss_pred ccCccccccchHHHHHHHHHhcCCCc-eEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCCCHHHHHHHHHH
Q 010355 145 IKGYEAFESRMSTLNDVINALKNPDV-HMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIAD 223 (512)
Q Consensus 145 ~~~~~~~~gR~~~l~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~i~~ 223 (512)
|.....++|.+.....+..++..+.. .++.++|++|+|||++|+.+++.... .++.++.+. .... .++..+.
T Consensus 17 P~~~~~~~~~~~~~~~l~~~~~~~~~~~~lll~G~~G~GKT~la~~l~~~~~~-----~~~~i~~~~-~~~~-~i~~~l~ 89 (316)
T PHA02544 17 PSTIDECILPAADKETFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCNEVGA-----EVLFVNGSD-CRID-FVRNRLT 89 (316)
T ss_pred CCcHHHhcCcHHHHHHHHHHHhcCCCCeEEEeeCcCCCCHHHHHHHHHHHhCc-----cceEeccCc-ccHH-HHHHHHH
Confidence 44566789999999999999886654 56666999999999999999887531 123444443 2221 1111111
Q ss_pred HhCCCCCCCCchHHHHHHHHHH-hCCCeEEEEEeCCCCh---hhhhhhCC--CCCCCCeEEEEEeCCcchh-ccccCCcc
Q 010355 224 KLGLKFYEESESGRARKLCERL-KKEKKILVILDDIWTN---LDLENVGI--PFGVRGCRVLMTARSQDVL-SSKMDCQN 296 (512)
Q Consensus 224 ~l~~~~~~~~~~~~~~~l~~~l-~~~k~~LlVlDdv~~~---~~~~~l~~--~~~~~gs~iivTtR~~~v~-~~~~~~~~ 296 (512)
.+ .... ..+.+-+||||++... .....+.. -....++++|+||...... ........
T Consensus 90 ~~----------------~~~~~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~sR~~ 153 (316)
T PHA02544 90 RF----------------ASTVSLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRSRCR 153 (316)
T ss_pred HH----------------HHhhcccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHhhce
Confidence 11 0000 0124568899999644 11112211 1114567888888654321 11122334
Q ss_pred ceecCCCCHHHHHHHHHH
Q 010355 297 NFLIGVLNESEARDLFKK 314 (512)
Q Consensus 297 ~~~l~~L~~~ea~~Lf~~ 314 (512)
.+.++..+.++...++..
T Consensus 154 ~i~~~~p~~~~~~~il~~ 171 (316)
T PHA02544 154 VIDFGVPTKEEQIEMMKQ 171 (316)
T ss_pred EEEeCCCCHHHHHHHHHH
Confidence 677777788777766554
No 91
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=98.26 E-value=1.4e-05 Score=89.01 Aligned_cols=157 Identities=15% Similarity=0.201 Sum_probs=92.8
Q ss_pred CccccccchHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHhhhhcCCC----Ce-EEEEEeCCCCCHHHHHHHH
Q 010355 147 GYEAFESRMSTLNDVINALKNPDVHMIGAYGMAGVGKTMLVKEVARQAKADKLF----DE-VVYAEVSQRPDVKKIQGQI 221 (512)
Q Consensus 147 ~~~~~~gR~~~l~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f----~~-~~wv~~~~~~~~~~ll~~i 221 (512)
...+++||+.++.+++..|.......+.++|++|+|||+||..++........+ .. ++.+.++ .++
T Consensus 171 ~~~~~igr~~ei~~~~~~l~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~~------~l~--- 241 (852)
T TIGR03346 171 KLDPVIGRDEEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDMG------ALI--- 241 (852)
T ss_pred CCCcCCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeHH------HHh---
Confidence 456799999999999999987666777899999999999999999886432111 12 2223221 111
Q ss_pred HHHhCCCCCCCCchHHHHHHHHHHh-CCCeEEEEEeCCCChh---------hhhhhCCCCC-CCCeEEEEEeCCcchh--
Q 010355 222 ADKLGLKFYEESESGRARKLCERLK-KEKKILVILDDIWTNL---------DLENVGIPFG-VRGCRVLMTARSQDVL-- 288 (512)
Q Consensus 222 ~~~l~~~~~~~~~~~~~~~l~~~l~-~~k~~LlVlDdv~~~~---------~~~~l~~~~~-~~gs~iivTtR~~~v~-- 288 (512)
. +.. ........+..+...+. .+++.+|++|++.... +...+..|.. ....++|.+|.....-
T Consensus 242 -a--~~~-~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~~g~i~~IgaTt~~e~r~~ 317 (852)
T TIGR03346 242 -A--GAK-YRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPALARGELHCIGATTLDEYRKY 317 (852)
T ss_pred -h--cch-hhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhhhcCceEEEEeCcHHHHHHH
Confidence 0 000 00111223444555553 2468999999997442 1112222322 2234555555543220
Q ss_pred ----ccccCCccceecCCCCHHHHHHHHHHHh
Q 010355 289 ----SSKMDCQNNFLIGVLNESEARDLFKKLV 316 (512)
Q Consensus 289 ----~~~~~~~~~~~l~~L~~~ea~~Lf~~~~ 316 (512)
.........+.+...+.++...++....
T Consensus 318 ~~~d~al~rRf~~i~v~~p~~~~~~~iL~~~~ 349 (852)
T TIGR03346 318 IEKDAALERRFQPVFVDEPTVEDTISILRGLK 349 (852)
T ss_pred hhcCHHHHhcCCEEEeCCCCHHHHHHHHHHHH
Confidence 1112234568899899999999987654
No 92
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=98.24 E-value=5e-05 Score=77.79 Aligned_cols=179 Identities=18% Similarity=0.164 Sum_probs=106.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHhCCC
Q 010355 170 VHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIADKLGLKFYEESESGRARKLCERLKKEK 249 (512)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k 249 (512)
...+.|+|++|+|||+|++.+++.......-..++|++. ..+...+...+... ....+.+.+..
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~------~~~~~~~~~~~~~~--------~~~~~~~~~~~-- 199 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSS------EKFTNDFVNALRNN--------KMEEFKEKYRS-- 199 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEH------HHHHHHHHHHHHcC--------CHHHHHHHHHh--
Confidence 356899999999999999999998764321234566643 34444555444321 12234444442
Q ss_pred eEEEEEeCCCChhh---h-hhhCC---CCCCCCeEEEEEeCCcchh--------ccccCCccceecCCCCHHHHHHHHHH
Q 010355 250 KILVILDDIWTNLD---L-ENVGI---PFGVRGCRVLMTARSQDVL--------SSKMDCQNNFLIGVLNESEARDLFKK 314 (512)
Q Consensus 250 ~~LlVlDdv~~~~~---~-~~l~~---~~~~~gs~iivTtR~~~v~--------~~~~~~~~~~~l~~L~~~ea~~Lf~~ 314 (512)
.-+|||||+..... + ..+.. .....+..+|+|+...... ...+.....+.+.+.+.+.-..++.+
T Consensus 200 ~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~il~~ 279 (405)
T TIGR00362 200 VDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAILQK 279 (405)
T ss_pred CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHHHHH
Confidence 35899999964311 1 11111 1113456688887653211 11122335789999999999999998
Q ss_pred HhCCCCCCchhHHHHHHHHHHcCCChhHHHHHHHHhc------cC--CHHHHHHHHHHh
Q 010355 315 LVGDKIENNDLKSLAMNIVKACRGLPIAIVTIARALR------NK--NTFEWKSALREL 365 (512)
Q Consensus 315 ~~~~~~~~~~~~~~~~~I~~~~~GlPLai~~ia~~L~------~~--~~~~w~~~l~~l 365 (512)
.+..... .--.++...|++.+.|.+-.+.-+-..|. ++ +......++..+
T Consensus 280 ~~~~~~~-~l~~e~l~~ia~~~~~~~r~l~~~l~~l~~~a~~~~~~it~~~~~~~L~~~ 337 (405)
T TIGR00362 280 KAEEEGL-ELPDEVLEFIAKNIRSNVRELEGALNRLLAYASLTGKPITLELAKEALKDL 337 (405)
T ss_pred HHHHcCC-CCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHh
Confidence 8753221 11246788899999988775443332221 22 667777777765
No 93
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.24 E-value=5.7e-06 Score=81.90 Aligned_cols=92 Identities=14% Similarity=0.172 Sum_probs=63.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCC--CCHHHHHHHHHHHhCCCCCCCCc---hH---H-HH
Q 010355 169 DVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQR--PDVKKIQGQIADKLGLKFYEESE---SG---R-AR 239 (512)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~--~~~~~ll~~i~~~l~~~~~~~~~---~~---~-~~ 239 (512)
.-..++|+|++|+|||||++.+++....+ +|+..+|+.+... ..+.++++.++..+-......+. .. . ..
T Consensus 167 ~Gq~~~IvG~~g~GKTtL~~~i~~~I~~n-hfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~e 245 (415)
T TIGR00767 167 KGQRGLIVAPPKAGKTVLLQKIAQAITRN-HPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVIE 245 (415)
T ss_pred CCCEEEEECCCCCChhHHHHHHHHhhccc-CCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHHH
Confidence 34678999999999999999999988754 7999999999865 68899999984433211111111 11 1 12
Q ss_pred HHHHHHhCCCeEEEEEeCCCCh
Q 010355 240 KLCERLKKEKKILVILDDIWTN 261 (512)
Q Consensus 240 ~l~~~l~~~k~~LlVlDdv~~~ 261 (512)
........+++.+|++|.+...
T Consensus 246 ~Ae~~~~~GkdVVLlIDEitR~ 267 (415)
T TIGR00767 246 KAKRLVEHKKDVVILLDSITRL 267 (415)
T ss_pred HHHHHHHcCCCeEEEEEChhHH
Confidence 2222234689999999999644
No 94
>PRK10865 protein disaggregation chaperone; Provisional
Probab=98.24 E-value=1.1e-05 Score=89.55 Aligned_cols=158 Identities=15% Similarity=0.191 Sum_probs=91.9
Q ss_pred cCccccccchHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHhhhhcCC-----CCeEEEEEeCCCCCHHHHHHH
Q 010355 146 KGYEAFESRMSTLNDVINALKNPDVHMIGAYGMAGVGKTMLVKEVARQAKADKL-----FDEVVYAEVSQRPDVKKIQGQ 220 (512)
Q Consensus 146 ~~~~~~~gR~~~l~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-----f~~~~wv~~~~~~~~~~ll~~ 220 (512)
....+++||+.++.+++..|.......+.++|++|+|||+||..++........ -..++++.++.- +.
T Consensus 175 ~~l~~vigr~~ei~~~i~iL~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~l------~a- 247 (857)
T PRK10865 175 GKLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGAL------VA- 247 (857)
T ss_pred CCCCcCCCCHHHHHHHHHHHhcCCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehhhh------hh-
Confidence 345679999999999999998777777889999999999999999988643211 112333333221 00
Q ss_pred HHHHhCCCCCCCCchHHHHHHHHHHh-CCCeEEEEEeCCCChh---------hhhhhCCCCC-CCCeEEEEEeCCcchh-
Q 010355 221 IADKLGLKFYEESESGRARKLCERLK-KEKKILVILDDIWTNL---------DLENVGIPFG-VRGCRVLMTARSQDVL- 288 (512)
Q Consensus 221 i~~~l~~~~~~~~~~~~~~~l~~~l~-~~k~~LlVlDdv~~~~---------~~~~l~~~~~-~~gs~iivTtR~~~v~- 288 (512)
+.. ........+..+...+. .+++.+|++|++.... +...+..|.- ....++|.||......
T Consensus 248 -----g~~-~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l~~g~l~~IgaTt~~e~r~ 321 (857)
T PRK10865 248 -----GAK-YRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALARGELHCVGATTLDEYRQ 321 (857)
T ss_pred -----ccc-hhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccchhHHHHhcchhhcCCCeEEEcCCCHHHHH
Confidence 000 00111222334444432 3468999999996542 1222323333 3334566555544320
Q ss_pred -----ccccCCccceecCCCCHHHHHHHHHHHh
Q 010355 289 -----SSKMDCQNNFLIGVLNESEARDLFKKLV 316 (512)
Q Consensus 289 -----~~~~~~~~~~~l~~L~~~ea~~Lf~~~~ 316 (512)
.........+.+...+.++...+++...
T Consensus 322 ~~~~d~al~rRf~~i~v~eP~~~~~~~iL~~l~ 354 (857)
T PRK10865 322 YIEKDAALERRFQKVFVAEPSVEDTIAILRGLK 354 (857)
T ss_pred HhhhcHHHHhhCCEEEeCCCCHHHHHHHHHHHh
Confidence 1111233356666668888888887654
No 95
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=98.24 E-value=7.6e-06 Score=76.78 Aligned_cols=184 Identities=16% Similarity=0.147 Sum_probs=111.2
Q ss_pred cccCccccccchHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeE-EEEEeCCCCCHHHHHHHH-
Q 010355 144 SIKGYEAFESRMSTLNDVINALKNPDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEV-VYAEVSQRPDVKKIQGQI- 221 (512)
Q Consensus 144 ~~~~~~~~~gR~~~l~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~-~wv~~~~~~~~~~ll~~i- 221 (512)
.|.....++|.+..+..|.+.+.....+...++|++|.|||+.|..+++..--.+.|.+. .-.++|......-+-..+
T Consensus 31 rPkt~de~~gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGisvvr~Kik 110 (346)
T KOG0989|consen 31 RPKTFDELAGQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGISVVREKIK 110 (346)
T ss_pred CCCcHHhhcchHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhcccccccccchhhhhc
Confidence 455677889999999999999988788999999999999999999999886544455443 334444333222111111
Q ss_pred -HHHhCCCCCCCCchHHHHHHHHHHh-CCCe-EEEEEeCCCCh--hhhhhhCCCCC--CCCeEEEEEeCCcchh-ccccC
Q 010355 222 -ADKLGLKFYEESESGRARKLCERLK-KEKK-ILVILDDIWTN--LDLENVGIPFG--VRGCRVLMTARSQDVL-SSKMD 293 (512)
Q Consensus 222 -~~~l~~~~~~~~~~~~~~~l~~~l~-~~k~-~LlVlDdv~~~--~~~~~l~~~~~--~~gs~iivTtR~~~v~-~~~~~ 293 (512)
..++..... .... .-++ -+||||++... ..|..++.... ...+++|+.+..-... .....
T Consensus 111 ~fakl~~~~~------------~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi~S 178 (346)
T KOG0989|consen 111 NFAKLTVLLK------------RSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPLVS 178 (346)
T ss_pred CHHHHhhccc------------cccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChHHHh
Confidence 000000000 0000 0133 58889999754 55766632221 4456665555443322 11223
Q ss_pred CccceecCCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCCh
Q 010355 294 CQNNFLIGVLNESEARDLFKKLVGDKIENNDLKSLAMNIVKACRGLP 340 (512)
Q Consensus 294 ~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~GlP 340 (512)
....+..++|..+....-+...+......- -.+..+.|++.++|--
T Consensus 179 RC~KfrFk~L~d~~iv~rL~~Ia~~E~v~~-d~~al~~I~~~S~GdL 224 (346)
T KOG0989|consen 179 RCQKFRFKKLKDEDIVDRLEKIASKEGVDI-DDDALKLIAKISDGDL 224 (346)
T ss_pred hHHHhcCCCcchHHHHHHHHHHHHHhCCCC-CHHHHHHHHHHcCCcH
Confidence 345788999999998888887774322211 1356788999998853
No 96
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=98.23 E-value=2.6e-05 Score=72.56 Aligned_cols=221 Identities=14% Similarity=0.118 Sum_probs=122.9
Q ss_pred ccCccccccchHHHHHHHHHhc-----CCCceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCCCHHHHHH
Q 010355 145 IKGYEAFESRMSTLNDVINALK-----NPDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQG 219 (512)
Q Consensus 145 ~~~~~~~~gR~~~l~~l~~~L~-----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ll~ 219 (512)
|.....|+|..+..++|.=.+. +...--+.++|++|.||||||.-+++...+. + -+..++...-
T Consensus 22 P~~l~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn--~----k~tsGp~leK----- 90 (332)
T COG2255 22 PKTLDEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANELGVN--L----KITSGPALEK----- 90 (332)
T ss_pred cccHHHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHhcCC--e----EecccccccC-----
Confidence 5567789999888877765554 4567789999999999999999999988754 1 1111111110
Q ss_pred HHHHHhCCCCCCCCchHHHHHHHHHHhCCCeEEEEEeCCCChh---------hhhhhC--CCCC-C-----------CCe
Q 010355 220 QIADKLGLKFYEESESGRARKLCERLKKEKKILVILDDIWTNL---------DLENVG--IPFG-V-----------RGC 276 (512)
Q Consensus 220 ~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~---------~~~~l~--~~~~-~-----------~gs 276 (512)
...+..++..|. ..=+|++|.+.... ..+.+. ...+ + +-+
T Consensus 91 ---------------~gDlaaiLt~Le--~~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFT 153 (332)
T COG2255 91 ---------------PGDLAAILTNLE--EGDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFT 153 (332)
T ss_pred ---------------hhhHHHHHhcCC--cCCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCCCee
Confidence 111222222232 34566777775331 111110 0000 2 233
Q ss_pred EEEEEeCCcchhccc-cCCccceecCCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChhHHHHHHHHhccC--
Q 010355 277 RVLMTARSQDVLSSK-MDCQNNFLIGVLNESEARDLFKKLVGDKIENNDLKSLAMNIVKACRGLPIAIVTIARALRNK-- 353 (512)
Q Consensus 277 ~iivTtR~~~v~~~~-~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~GlPLai~~ia~~L~~~-- 353 (512)
-|=.|||...+.... -.-..+.++.--+.++-.++..+.+..-.. .--.+.+.+|++...|-|.-..-+-+.++..
T Consensus 154 LIGATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~i-~i~~~~a~eIA~rSRGTPRIAnRLLrRVRDfa~ 232 (332)
T COG2255 154 LIGATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILGI-EIDEEAALEIARRSRGTPRIANRLLRRVRDFAQ 232 (332)
T ss_pred EeeeccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhCC-CCChHHHHHHHHhccCCcHHHHHHHHHHHHHHH
Confidence 455688876553211 122357788889999999999887741111 1113568899999999998766665555411
Q ss_pred -------CHHHHHHHHHHhcCCCCCCCCcchHHHHhHHHHHHhccchhh
Q 010355 354 -------NTFEWKSALRELTRPSSGSFSGVAAEAYKTSELSYNHLEGAL 395 (512)
Q Consensus 354 -------~~~~w~~~l~~l~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~ 395 (512)
+...-...++.|.-... .++.....+..++.-.|+.=|--+
T Consensus 233 V~~~~~I~~~ia~~aL~~L~Vd~~-GLd~~D~k~L~~li~~f~GgPVGl 280 (332)
T COG2255 233 VKGDGDIDRDIADKALKMLDVDEL-GLDEIDRKYLRALIEQFGGGPVGL 280 (332)
T ss_pred HhcCCcccHHHHHHHHHHhCcccc-cccHHHHHHHHHHHHHhCCCCccH
Confidence 33333445555443211 122224445555555554434333
No 97
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.22 E-value=3.4e-05 Score=81.98 Aligned_cols=180 Identities=13% Similarity=0.166 Sum_probs=104.7
Q ss_pred ccCccccccchHHHHHHHHHhcCCCc-eEEEEEcCCCCcHHHHHHHHHHhhhhcCCCC-------------------eEE
Q 010355 145 IKGYEAFESRMSTLNDVINALKNPDV-HMIGAYGMAGVGKTMLVKEVARQAKADKLFD-------------------EVV 204 (512)
Q Consensus 145 ~~~~~~~~gR~~~l~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~-------------------~~~ 204 (512)
|.....++|.+..+..|.+++..++. +.+.++|+.|+||||+|+.+++..--..... .++
T Consensus 12 P~~f~~iiGq~~v~~~L~~~i~~~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c~~i~~g~~~d~~ 91 (576)
T PRK14965 12 PQTFSDLTGQEHVSRTLQNAIDTGRVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPCVEITEGRSVDVF 91 (576)
T ss_pred CCCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHHHHHhcCCCCCee
Confidence 34566789999999999999887665 5678999999999999999988753211100 011
Q ss_pred EEEeCCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHh----CCCeEEEEEeCCCCh--hhhhhhCCCC--CCCCe
Q 010355 205 YAEVSQRPDVKKIQGQIADKLGLKFYEESESGRARKLCERLK----KEKKILVILDDIWTN--LDLENVGIPF--GVRGC 276 (512)
Q Consensus 205 wv~~~~~~~~~~ll~~i~~~l~~~~~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~--~~~~~l~~~~--~~~gs 276 (512)
.+........ ..+..+...+. .+++-++|+|++... ...+.+.-.+ +..++
T Consensus 92 eid~~s~~~v---------------------~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~ 150 (576)
T PRK14965 92 EIDGASNTGV---------------------DDIRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHV 150 (576)
T ss_pred eeeccCccCH---------------------HHHHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCe
Confidence 1111111111 12222333222 235568899999654 2233331111 13455
Q ss_pred EEEEEe-CCcchhccccCCccceecCCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCCh-hHHHHH
Q 010355 277 RVLMTA-RSQDVLSSKMDCQNNFLIGVLNESEARDLFKKLVGDKIENNDLKSLAMNIVKACRGLP-IAIVTI 346 (512)
Q Consensus 277 ~iivTt-R~~~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~GlP-Lai~~i 346 (512)
.+|++| ....+..........+.+.+++..+....+...+......- -...+..|++.++|.. .|+..+
T Consensus 151 ~fIl~t~~~~kl~~tI~SRc~~~~f~~l~~~~i~~~L~~i~~~egi~i-~~~al~~la~~a~G~lr~al~~L 221 (576)
T PRK14965 151 KFIFATTEPHKVPITILSRCQRFDFRRIPLQKIVDRLRYIADQEGISI-SDAALALVARKGDGSMRDSLSTL 221 (576)
T ss_pred EEEEEeCChhhhhHHHHHhhhhhhcCCCCHHHHHHHHHHHHHHhCCCC-CHHHHHHHHHHcCCCHHHHHHHH
Confidence 565555 44434322334456888999999999888887664222111 1345677888888865 344444
No 98
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=98.22 E-value=5.1e-05 Score=78.70 Aligned_cols=179 Identities=17% Similarity=0.146 Sum_probs=107.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHhCCC
Q 010355 170 VHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIADKLGLKFYEESESGRARKLCERLKKEK 249 (512)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k 249 (512)
...+.|+|++|+|||+|++.+++.......-..++|++.. .+...+...+... ....+.+.+. +
T Consensus 148 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~------~~~~~~~~~~~~~--------~~~~~~~~~~--~ 211 (450)
T PRK00149 148 YNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSE------KFTNDFVNALRNN--------TMEEFKEKYR--S 211 (450)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHH------HHHHHHHHHHHcC--------cHHHHHHHHh--c
Confidence 3578999999999999999999987643222345666443 3344444444211 1233444554 3
Q ss_pred eEEEEEeCCCChhh----hhhhCC---CCCCCCeEEEEEeCCcchh--------ccccCCccceecCCCCHHHHHHHHHH
Q 010355 250 KILVILDDIWTNLD----LENVGI---PFGVRGCRVLMTARSQDVL--------SSKMDCQNNFLIGVLNESEARDLFKK 314 (512)
Q Consensus 250 ~~LlVlDdv~~~~~----~~~l~~---~~~~~gs~iivTtR~~~v~--------~~~~~~~~~~~l~~L~~~ea~~Lf~~ 314 (512)
.-+|||||+..... ...+.. .+...|..||+||....-. ...+.....+.+.+.+.+.-..++.+
T Consensus 212 ~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~il~~ 291 (450)
T PRK00149 212 VDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAILKK 291 (450)
T ss_pred CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHHHHH
Confidence 45899999964311 111111 1113455688887654211 11223345789999999999999998
Q ss_pred HhCCCCCCchhHHHHHHHHHHcCCChhHHHHHHHHh------ccC--CHHHHHHHHHHh
Q 010355 315 LVGDKIENNDLKSLAMNIVKACRGLPIAIVTIARAL------RNK--NTFEWKSALREL 365 (512)
Q Consensus 315 ~~~~~~~~~~~~~~~~~I~~~~~GlPLai~~ia~~L------~~~--~~~~w~~~l~~l 365 (512)
.+..... .--.++..-|++.+.|..-.+.-+-..| .++ +....+.++..+
T Consensus 292 ~~~~~~~-~l~~e~l~~ia~~~~~~~R~l~~~l~~l~~~~~~~~~~it~~~~~~~l~~~ 349 (450)
T PRK00149 292 KAEEEGI-DLPDEVLEFIAKNITSNVRELEGALNRLIAYASLTGKPITLELAKEALKDL 349 (450)
T ss_pred HHHHcCC-CCCHHHHHHHHcCcCCCHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHh
Confidence 8753211 1124678889999998877544332222 122 777788888875
No 99
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=98.22 E-value=4.1e-05 Score=80.79 Aligned_cols=193 Identities=11% Similarity=0.100 Sum_probs=106.2
Q ss_pred ccCccccccchHHHHHHHHHhcCCCc-eEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCCCHHHHHHHHHH
Q 010355 145 IKGYEAFESRMSTLNDVINALKNPDV-HMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIAD 223 (512)
Q Consensus 145 ~~~~~~~~gR~~~l~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~i~~ 223 (512)
|.....++|.+..+..|..++.++.. +.+.++|+.|+||||+|+.+++..--...... ..+....+. +.|..
T Consensus 12 P~~f~diiGqe~iv~~L~~~i~~~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~---~pC~~C~~C----~~i~~ 84 (563)
T PRK06647 12 PRDFNSLEGQDFVVETLKHSIESNKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTP---MPCGECSSC----KSIDN 84 (563)
T ss_pred CCCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCC---CCCccchHH----HHHHc
Confidence 44566789999999999999986554 56889999999999999999987642111100 000000011 11110
Q ss_pred HhCCC---CCC--CCchHHHHHHHHHHh----CCCeEEEEEeCCCCh--hhhhhhCCCCC--CCCeEEEEEeCC-cchhc
Q 010355 224 KLGLK---FYE--ESESGRARKLCERLK----KEKKILVILDDIWTN--LDLENVGIPFG--VRGCRVLMTARS-QDVLS 289 (512)
Q Consensus 224 ~l~~~---~~~--~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~--~~~~~l~~~~~--~~gs~iivTtR~-~~v~~ 289 (512)
.-... ... ......+..+.+.+. .+++-++|+|++... ..++.+...+. ...+.+|++|.. ..+..
T Consensus 85 ~~~~dv~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~kL~~ 164 (563)
T PRK06647 85 DNSLDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKLPA 164 (563)
T ss_pred CCCCCeEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChHHhHH
Confidence 00000 000 011112222222211 245668999998654 33444422222 345666665543 22322
Q ss_pred cccCCccceecCCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChhHHHH
Q 010355 290 SKMDCQNNFLIGVLNESEARDLFKKLVGDKIENNDLKSLAMNIVKACRGLPIAIVT 345 (512)
Q Consensus 290 ~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~GlPLai~~ 345 (512)
........+.+.+++.++....+.+.+...... --.+.+..|++.++|.+..+..
T Consensus 165 tI~SRc~~~~f~~l~~~el~~~L~~i~~~egi~-id~eAl~lLa~~s~GdlR~als 219 (563)
T PRK06647 165 TIKSRCQHFNFRLLSLEKIYNMLKKVCLEDQIK-YEDEALKWIAYKSTGSVRDAYT 219 (563)
T ss_pred HHHHhceEEEecCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHH
Confidence 223344578999999999988888776322211 1135677788999998754433
No 100
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=98.22 E-value=7.4e-05 Score=79.10 Aligned_cols=192 Identities=13% Similarity=0.110 Sum_probs=105.8
Q ss_pred ccCccccccchHHHHHHHHHhcCCC-ceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCCCHHHHHHHHHH
Q 010355 145 IKGYEAFESRMSTLNDVINALKNPD-VHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIAD 223 (512)
Q Consensus 145 ~~~~~~~~gR~~~l~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~i~~ 223 (512)
|.....++|.+..+..|.+++..++ .+.+.++|+.|+||||+|+.++...--..... ..+++.....+.|..
T Consensus 12 P~~f~~viGq~~v~~~L~~~i~~~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~-------~~pC~~C~~C~~i~~ 84 (559)
T PRK05563 12 PQTFEDVVGQEHITKTLKNAIKQGKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPD-------GEPCNECEICKAITN 84 (559)
T ss_pred CCcHHhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCC-------CCCCCccHHHHHHhc
Confidence 4456678999999999999988654 46678899999999999999987653211000 001111111111111
Q ss_pred HhCCCC-----CCCCchHHHHHHHHHHh----CCCeEEEEEeCCCCh--hhhhhhCCCCC--CCCeEEEEEe-CCcchhc
Q 010355 224 KLGLKF-----YEESESGRARKLCERLK----KEKKILVILDDIWTN--LDLENVGIPFG--VRGCRVLMTA-RSQDVLS 289 (512)
Q Consensus 224 ~l~~~~-----~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~--~~~~~l~~~~~--~~gs~iivTt-R~~~v~~ 289 (512)
...... ........+..+..... .+++-++|+|++... ..+..+.-.+. ..++.+|++| ....+..
T Consensus 85 g~~~dv~eidaas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~ki~~ 164 (559)
T PRK05563 85 GSLMDVIEIDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHKIPA 164 (559)
T ss_pred CCCCCeEEeeccccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChhhCcH
Confidence 100000 00011122333333322 246678899999754 33443321111 3345555544 4333322
Q ss_pred cccCCccceecCCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChhHHH
Q 010355 290 SKMDCQNNFLIGVLNESEARDLFKKLVGDKIENNDLKSLAMNIVKACRGLPIAIV 344 (512)
Q Consensus 290 ~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~GlPLai~ 344 (512)
........+.+.+++..+....+...+......- -...+..|++.++|.+.-+.
T Consensus 165 tI~SRc~~~~f~~~~~~ei~~~L~~i~~~egi~i-~~~al~~ia~~s~G~~R~al 218 (559)
T PRK05563 165 TILSRCQRFDFKRISVEDIVERLKYILDKEGIEY-EDEALRLIARAAEGGMRDAL 218 (559)
T ss_pred HHHhHheEEecCCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHHH
Confidence 2233446788999999999988887764222111 13456778888888776433
No 101
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=98.21 E-value=4.2e-05 Score=77.30 Aligned_cols=172 Identities=16% Similarity=0.242 Sum_probs=96.1
Q ss_pred CccccccchHHHHHHHHHhc----C---------CCceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCCC
Q 010355 147 GYEAFESRMSTLNDVINALK----N---------PDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPD 213 (512)
Q Consensus 147 ~~~~~~gR~~~l~~l~~~L~----~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~ 213 (512)
....+.|-+...+.|.+.+. . ...+.+.|+|++|+|||+||+.+++.... .| +.+..
T Consensus 143 ~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~--~f---i~i~~----- 212 (398)
T PTZ00454 143 TYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTA--TF---IRVVG----- 212 (398)
T ss_pred CHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCC--CE---EEEeh-----
Confidence 34556787777766665442 1 23577999999999999999999987642 22 22211
Q ss_pred HHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHhCCCeEEEEEeCCCChh------------h----hhhhCCC---C-CC
Q 010355 214 VKKIQGQIADKLGLKFYEESESGRARKLCERLKKEKKILVILDDIWTNL------------D----LENVGIP---F-GV 273 (512)
Q Consensus 214 ~~~ll~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~------------~----~~~l~~~---~-~~ 273 (512)
..+.... ++ .....+..++.......+.+|+||++.... . +..+... + ..
T Consensus 213 -s~l~~k~---~g------e~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~ 282 (398)
T PTZ00454 213 -SEFVQKY---LG------EGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQT 282 (398)
T ss_pred -HHHHHHh---cc------hhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCC
Confidence 1111111 11 111233445555555678999999975321 0 1111111 1 13
Q ss_pred CCeEEEEEeCCcchhcc-cc---CCccceecCCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCCh
Q 010355 274 RGCRVLMTARSQDVLSS-KM---DCQNNFLIGVLNESEARDLFKKLVGDKIENNDLKSLAMNIVKACRGLP 340 (512)
Q Consensus 274 ~gs~iivTtR~~~v~~~-~~---~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~GlP 340 (512)
.+..||+||........ .. .-...+.++..+.++...+|..+.......+.. ....+++.+.|+.
T Consensus 283 ~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~dv--d~~~la~~t~g~s 351 (398)
T PTZ00454 283 TNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEEV--DLEDFVSRPEKIS 351 (398)
T ss_pred CCEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCccc--CHHHHHHHcCCCC
Confidence 46678888876543311 11 223568888888888888888766432222211 1345667776653
No 102
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.20 E-value=4.5e-05 Score=81.42 Aligned_cols=195 Identities=11% Similarity=0.068 Sum_probs=108.1
Q ss_pred cCccccccchHHHHHHHHHhcCCC-ceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHH
Q 010355 146 KGYEAFESRMSTLNDVINALKNPD-VHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIADK 224 (512)
Q Consensus 146 ~~~~~~~gR~~~l~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~i~~~ 224 (512)
.....++|.+..+..|..++..++ .+.+.++|+.|+||||+|+.+++..--..... .. ...+......+.+...
T Consensus 13 ~~f~~liGq~~i~~~L~~~l~~~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~-~~----~~~Cg~C~~C~~i~~g 87 (620)
T PRK14948 13 QRFDELVGQEAIATTLKNALISNRIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDK-PT----PEPCGKCELCRAIAAG 87 (620)
T ss_pred CcHhhccChHHHHHHHHHHHHcCCCCceEEEECCCCCChHHHHHHHHHHhcCCCcCC-CC----CCCCcccHHHHHHhcC
Confidence 345568899999999999888654 36889999999999999999998764211110 00 0111112222222221
Q ss_pred hCCC-----CCCCCchHHHHHHHHHHh----CCCeEEEEEeCCCCh--hhhhhhCCCCC--CCCeEEEEEeCCc-chhcc
Q 010355 225 LGLK-----FYEESESGRARKLCERLK----KEKKILVILDDIWTN--LDLENVGIPFG--VRGCRVLMTARSQ-DVLSS 290 (512)
Q Consensus 225 l~~~-----~~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~--~~~~~l~~~~~--~~gs~iivTtR~~-~v~~~ 290 (512)
.... .........+..+...+. .+++-++|||++... ..++.+.-.+. ...+.+|++|.+. .+...
T Consensus 88 ~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~llpT 167 (620)
T PRK14948 88 NALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVLPT 167 (620)
T ss_pred CCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhhhhHH
Confidence 1110 001111223333333332 145568999999754 23333311111 2345555555433 23222
Q ss_pred ccCCccceecCCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChhHHHHH
Q 010355 291 KMDCQNNFLIGVLNESEARDLFKKLVGDKIENNDLKSLAMNIVKACRGLPIAIVTI 346 (512)
Q Consensus 291 ~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~GlPLai~~i 346 (512)
.......+.+.+++.++....+...+......- -...+..|++.++|.+..+..+
T Consensus 168 IrSRc~~~~f~~l~~~ei~~~L~~ia~kegi~i-s~~al~~La~~s~G~lr~A~~l 222 (620)
T PRK14948 168 IISRCQRFDFRRIPLEAMVQHLSEIAEKESIEI-EPEALTLVAQRSQGGLRDAESL 222 (620)
T ss_pred HHhheeEEEecCCCHHHHHHHHHHHHHHhCCCC-CHHHHHHHHHHcCCCHHHHHHH
Confidence 233446788889999998888877664321111 1245778999999987655443
No 103
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.16 E-value=0.00011 Score=70.56 Aligned_cols=182 Identities=19% Similarity=0.228 Sum_probs=106.8
Q ss_pred ccccccchHHHHHHHHHhc-------------CCCceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCCCH
Q 010355 148 YEAFESRMSTLNDVINALK-------------NPDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDV 214 (512)
Q Consensus 148 ~~~~~gR~~~l~~l~~~L~-------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~ 214 (512)
+..+-|-++.+++|.+.+. -..++-|.+||++|.|||-||++|+++.... |+.+..+
T Consensus 150 Y~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~At-------FIrvvgS--- 219 (406)
T COG1222 150 YEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDAT-------FIRVVGS--- 219 (406)
T ss_pred hhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCce-------EEEeccH---
Confidence 4455577888888777654 1356788999999999999999999986632 3444332
Q ss_pred HHHHHHHHHHhCCCCCCCCchHHHHHHHHHHhCCCeEEEEEeCCCChh--------------------hhhhhCCCCCCC
Q 010355 215 KKIQGQIADKLGLKFYEESESGRARKLCERLKKEKKILVILDDIWTNL--------------------DLENVGIPFGVR 274 (512)
Q Consensus 215 ~~ll~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~--------------------~~~~l~~~~~~~ 274 (512)
++.+.. +| .....+..+++.-+.+.+++|++|.++... -+.++-..-+..
T Consensus 220 -ElVqKY---iG------EGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~ 289 (406)
T COG1222 220 -ELVQKY---IG------EGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRG 289 (406)
T ss_pred -HHHHHH---hc------cchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCC
Confidence 222211 11 223456667777777889999999985321 122221111155
Q ss_pred CeEEEEEeCCcchh-c---cccCCccceecCCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCCh----hHHHHH
Q 010355 275 GCRVLMTARSQDVL-S---SKMDCQNNFLIGVLNESEARDLFKKLVGDKIENNDLKSLAMNIVKACRGLP----IAIVTI 346 (512)
Q Consensus 275 gs~iivTtR~~~v~-~---~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~GlP----Lai~~i 346 (512)
+.|||..|....++ + +...-...|+++.-+...-.++|+-+...-....+. -...|++.|.|.- .||.+=
T Consensus 290 nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dv--d~e~la~~~~g~sGAdlkaictE 367 (406)
T COG1222 290 NVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDV--DLELLARLTEGFSGADLKAICTE 367 (406)
T ss_pred CeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCc--CHHHHHHhcCCCchHHHHHHHHH
Confidence 68899888766554 1 111223567777555555556666555422221111 1345667777763 456666
Q ss_pred HHHhc
Q 010355 347 ARALR 351 (512)
Q Consensus 347 a~~L~ 351 (512)
|++++
T Consensus 368 AGm~A 372 (406)
T COG1222 368 AGMFA 372 (406)
T ss_pred HhHHH
Confidence 66665
No 104
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=98.16 E-value=1.7e-05 Score=79.90 Aligned_cols=108 Identities=22% Similarity=0.288 Sum_probs=72.0
Q ss_pred cccccchHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCC
Q 010355 149 EAFESRMSTLNDVINALKNPDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIADKLGLK 228 (512)
Q Consensus 149 ~~~~gR~~~l~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~i~~~l~~~ 228 (512)
..+++.+..++.+...|... +.+.++|++|+|||++|+.+++.......|..+.||.+++..+..+++..+.- .+..
T Consensus 175 ~d~~i~e~~le~l~~~L~~~--~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~rP-~~vg 251 (459)
T PRK11331 175 NDLFIPETTIETILKRLTIK--KNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYRP-NGVG 251 (459)
T ss_pred hcccCCHHHHHHHHHHHhcC--CCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhcccCC-CCCC
Confidence 34667888899999888754 56888999999999999999998765566888999999988887776542210 0000
Q ss_pred CCCCCchHHHHHHHHHHh--CCCeEEEEEeCCCCh
Q 010355 229 FYEESESGRARKLCERLK--KEKKILVILDDIWTN 261 (512)
Q Consensus 229 ~~~~~~~~~~~~l~~~l~--~~k~~LlVlDdv~~~ 261 (512)
.. -.......+..... ..++++||||++...
T Consensus 252 y~--~~~G~f~~~~~~A~~~p~~~~vliIDEINRa 284 (459)
T PRK11331 252 FR--RKDGIFYNFCQQAKEQPEKKYVFIIDEINRA 284 (459)
T ss_pred eE--ecCchHHHHHHHHHhcccCCcEEEEehhhcc
Confidence 00 00111112222222 246899999998643
No 105
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=98.16 E-value=0.00011 Score=75.54 Aligned_cols=180 Identities=13% Similarity=0.164 Sum_probs=107.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHhCCC
Q 010355 170 VHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIADKLGLKFYEESESGRARKLCERLKKEK 249 (512)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k 249 (512)
...+.|+|.+|+|||+|++.+++.......-..++|++. .+++..+...+... ......+.+. .+
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~------~~f~~~~~~~~~~~--------~~~~f~~~~~-~~ 194 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITS------EKFLNDLVDSMKEG--------KLNEFREKYR-KK 194 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEH------HHHHHHHHHHHhcc--------cHHHHHHHHH-hc
Confidence 356999999999999999999998764321235667653 35566665555321 1223333333 23
Q ss_pred eEEEEEeCCCChh---hh-hhhCCCC---CCCCeEEEEEeCCcc-hh-------ccccCCccceecCCCCHHHHHHHHHH
Q 010355 250 KILVILDDIWTNL---DL-ENVGIPF---GVRGCRVLMTARSQD-VL-------SSKMDCQNNFLIGVLNESEARDLFKK 314 (512)
Q Consensus 250 ~~LlVlDdv~~~~---~~-~~l~~~~---~~~gs~iivTtR~~~-v~-------~~~~~~~~~~~l~~L~~~ea~~Lf~~ 314 (512)
.-+|+|||+.... .. ..+...+ ...|..||+||.... -. .........+.+.+.+.+.-..++.+
T Consensus 195 ~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL~~ 274 (440)
T PRK14088 195 VDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKIARK 274 (440)
T ss_pred CCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHHHHH
Confidence 5689999997431 11 1111111 134557888875332 11 11123345788999999999999998
Q ss_pred HhCCCCCCchhHHHHHHHHHHcCCChhHHHHHHHHh------ccC--CHHHHHHHHHHh
Q 010355 315 LVGDKIENNDLKSLAMNIVKACRGLPIAIVTIARAL------RNK--NTFEWKSALREL 365 (512)
Q Consensus 315 ~~~~~~~~~~~~~~~~~I~~~~~GlPLai~~ia~~L------~~~--~~~~w~~~l~~l 365 (512)
.+..... .--.++..-|++.+.|..-.+.-+-..| .++ +....+.++..+
T Consensus 275 ~~~~~~~-~l~~ev~~~Ia~~~~~~~R~L~g~l~~l~~~~~~~~~~it~~~a~~~L~~~ 332 (440)
T PRK14088 275 MLEIEHG-ELPEEVLNFVAENVDDNLRRLRGAIIKLLVYKETTGEEVDLKEAILLLKDF 332 (440)
T ss_pred HHHhcCC-CCCHHHHHHHHhccccCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 8752211 1124678889999888755444433322 122 677777777765
No 106
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=98.16 E-value=6e-05 Score=79.03 Aligned_cols=178 Identities=12% Similarity=0.085 Sum_probs=105.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHhCCCe
Q 010355 171 HMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIADKLGLKFYEESESGRARKLCERLKKEKK 250 (512)
Q Consensus 171 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~ 250 (512)
..+.|+|..|+|||.|++.+++.......-..++|++. .+++..+...+... ....+.+++. +.
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yita------eef~~el~~al~~~--------~~~~f~~~y~--~~ 378 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSS------EEFTNEFINSIRDG--------KGDSFRRRYR--EM 378 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeH------HHHHHHHHHHHHhc--------cHHHHHHHhh--cC
Confidence 45899999999999999999998753222234566643 34444544433211 1223334443 24
Q ss_pred EEEEEeCCCCh---hhhhh-h---CCCCCCCCeEEEEEeCCcch--------hccccCCccceecCCCCHHHHHHHHHHH
Q 010355 251 ILVILDDIWTN---LDLEN-V---GIPFGVRGCRVLMTARSQDV--------LSSKMDCQNNFLIGVLNESEARDLFKKL 315 (512)
Q Consensus 251 ~LlVlDdv~~~---~~~~~-l---~~~~~~~gs~iivTtR~~~v--------~~~~~~~~~~~~l~~L~~~ea~~Lf~~~ 315 (512)
=||||||+... ..+.. + ...+...+..|||||+...- +...+....++.|.+.+.+.-..++.++
T Consensus 379 DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~kk 458 (617)
T PRK14086 379 DILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILRKK 458 (617)
T ss_pred CEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHHHH
Confidence 58999999643 11211 1 11111446678888876421 1122345568899999999999999988
Q ss_pred hCCCCCCchhHHHHHHHHHHcCCChhHHHHHHHHhc------cC--CHHHHHHHHHHh
Q 010355 316 VGDKIENNDLKSLAMNIVKACRGLPIAIVTIARALR------NK--NTFEWKSALREL 365 (512)
Q Consensus 316 ~~~~~~~~~~~~~~~~I~~~~~GlPLai~~ia~~L~------~~--~~~~w~~~l~~l 365 (512)
+..... .--.+++.-|++.+.+..-.|.-+-..|. ++ +...-+.+++.+
T Consensus 459 a~~r~l-~l~~eVi~yLa~r~~rnvR~LegaL~rL~a~a~~~~~~itl~la~~vL~~~ 515 (617)
T PRK14086 459 AVQEQL-NAPPEVLEFIASRISRNIRELEGALIRVTAFASLNRQPVDLGLTEIVLRDL 515 (617)
T ss_pred HHhcCC-CCCHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHh
Confidence 753221 11246777888888777554444333331 22 566666777765
No 107
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=98.16 E-value=2.4e-05 Score=74.95 Aligned_cols=133 Identities=12% Similarity=0.193 Sum_probs=68.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHhCC
Q 010355 169 DVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIADKLGLKFYEESESGRARKLCERLKKE 248 (512)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 248 (512)
....+.++|++|+||||+|+.+++............++.++. ..+.... ++ .. ......+... .
T Consensus 41 ~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~----~~l~~~~---~g-----~~-~~~~~~~~~~---a 104 (261)
T TIGR02881 41 QVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVER----ADLVGEY---IG-----HT-AQKTREVIKK---A 104 (261)
T ss_pred CcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecH----HHhhhhh---cc-----ch-HHHHHHHHHh---c
Confidence 456788999999999999999988753211111112333322 1111110 00 00 1112222222 2
Q ss_pred CeEEEEEeCCCChh----------hhhhhCCCCC--CCCeEEEEEeCCcchh------ccccCC-ccceecCCCCHHHHH
Q 010355 249 KKILVILDDIWTNL----------DLENVGIPFG--VRGCRVLMTARSQDVL------SSKMDC-QNNFLIGVLNESEAR 309 (512)
Q Consensus 249 k~~LlVlDdv~~~~----------~~~~l~~~~~--~~gs~iivTtR~~~v~------~~~~~~-~~~~~l~~L~~~ea~ 309 (512)
...+|+||++.... ....+..... .....+|+++...... ...... ...+.+++++.++..
T Consensus 105 ~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila~~~~~~~~~~~~~p~L~sRf~~~i~f~~~~~~el~ 184 (261)
T TIGR02881 105 LGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLILAGYSDEMDYFLSLNPGLRSRFPISIDFPDYTVEELM 184 (261)
T ss_pred cCCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEEecCCcchhHHHHhcChHHHhccceEEEECCCCHHHHH
Confidence 24589999997521 2222211111 2233455555433210 001112 246889999999999
Q ss_pred HHHHHHhC
Q 010355 310 DLFKKLVG 317 (512)
Q Consensus 310 ~Lf~~~~~ 317 (512)
+++.+.+.
T Consensus 185 ~Il~~~~~ 192 (261)
T TIGR02881 185 EIAERMVK 192 (261)
T ss_pred HHHHHHHH
Confidence 99987764
No 108
>PRK06620 hypothetical protein; Validated
Probab=98.13 E-value=1.9e-05 Score=72.99 Aligned_cols=138 Identities=17% Similarity=0.056 Sum_probs=81.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHhCCCe
Q 010355 171 HMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIADKLGLKFYEESESGRARKLCERLKKEKK 250 (512)
Q Consensus 171 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~ 250 (512)
+.+.|+|++|+|||+|++.+++.... .++. ..... . ..+. ..
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~~-------~~~~--~~~~~------------------------~---~~~~--~~ 86 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSNA-------YIIK--DIFFN------------------------E---EILE--KY 86 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccCC-------EEcc--hhhhc------------------------h---hHHh--cC
Confidence 67899999999999999987765431 1221 00000 0 0111 23
Q ss_pred EEEEEeCCCChhh--hhhhCCCCCCCCeEEEEEeCCcchh------ccccCCccceecCCCCHHHHHHHHHHHhCCCCCC
Q 010355 251 ILVILDDIWTNLD--LENVGIPFGVRGCRVLMTARSQDVL------SSKMDCQNNFLIGVLNESEARDLFKKLVGDKIEN 322 (512)
Q Consensus 251 ~LlVlDdv~~~~~--~~~l~~~~~~~gs~iivTtR~~~v~------~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~ 322 (512)
-+|++||+..... +-.+...+...|..||+|++..... ...+....++.+++++.++-..++.+.+.....
T Consensus 87 d~lliDdi~~~~~~~lf~l~N~~~e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~~l- 165 (214)
T PRK06620 87 NAFIIEDIENWQEPALLHIFNIINEKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHFSISSV- 165 (214)
T ss_pred CEEEEeccccchHHHHHHHHHHHHhcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHHcCC-
Confidence 5788999964321 1112111125577899998865431 111233458999999999988888877642211
Q ss_pred chhHHHHHHHHHHcCCChhHHHHHH
Q 010355 323 NDLKSLAMNIVKACRGLPIAIVTIA 347 (512)
Q Consensus 323 ~~~~~~~~~I~~~~~GlPLai~~ia 347 (512)
.--+++..-|++.+.|.--.+.-+-
T Consensus 166 ~l~~ev~~~L~~~~~~d~r~l~~~l 190 (214)
T PRK06620 166 TISRQIIDFLLVNLPREYSKIIEIL 190 (214)
T ss_pred CCCHHHHHHHHHHccCCHHHHHHHH
Confidence 1114677788888877655544433
No 109
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=98.13 E-value=1.1e-05 Score=87.69 Aligned_cols=157 Identities=20% Similarity=0.239 Sum_probs=93.5
Q ss_pred ccccccchHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHhhhhcC-C---CCeEEEEEeCCCCCHHHHHHHHHH
Q 010355 148 YEAFESRMSTLNDVINALKNPDVHMIGAYGMAGVGKTMLVKEVARQAKADK-L---FDEVVYAEVSQRPDVKKIQGQIAD 223 (512)
Q Consensus 148 ~~~~~gR~~~l~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-~---f~~~~wv~~~~~~~~~~ll~~i~~ 223 (512)
..+++||+.++.+++..|.......+.|+|++|+|||+||+.++....... . ..+.+|.. ++.. ++.
T Consensus 185 ~~~liGR~~ei~~~i~iL~r~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l-----~~~~----lla 255 (758)
T PRK11034 185 IDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSL-----DIGS----LLA 255 (758)
T ss_pred CCcCcCCCHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEec-----cHHH----Hhc
Confidence 457899999999999999876556778999999999999999998753321 1 13444421 1111 110
Q ss_pred HhCCCCCCCCchHHHHHHHHHHhCCCeEEEEEeCCCCh----------hhhhhhCCCCC-CCCeEEEEEeCCcchh----
Q 010355 224 KLGLKFYEESESGRARKLCERLKKEKKILVILDDIWTN----------LDLENVGIPFG-VRGCRVLMTARSQDVL---- 288 (512)
Q Consensus 224 ~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~----------~~~~~l~~~~~-~~gs~iivTtR~~~v~---- 288 (512)
|.. ........+..+...+...++.+|+||++... .+...+..|.. ....+||.+|......
T Consensus 256 --G~~-~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~g~i~vIgATt~~E~~~~~~ 332 (758)
T PRK11034 256 --GTK-YRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVIGSTTYQEFSNIFE 332 (758)
T ss_pred --ccc-hhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhCCCeEEEecCChHHHHHHhh
Confidence 110 11122233445555555456789999999643 11211222222 3334555555543310
Q ss_pred --ccccCCccceecCCCCHHHHHHHHHHHh
Q 010355 289 --SSKMDCQNNFLIGVLNESEARDLFKKLV 316 (512)
Q Consensus 289 --~~~~~~~~~~~l~~L~~~ea~~Lf~~~~ 316 (512)
.........+.+++++.+++..++....
T Consensus 333 ~D~AL~rRFq~I~v~ePs~~~~~~IL~~~~ 362 (758)
T PRK11034 333 KDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_pred ccHHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 1112234579999999999999998653
No 110
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=98.12 E-value=0.00019 Score=70.37 Aligned_cols=193 Identities=15% Similarity=0.159 Sum_probs=110.8
Q ss_pred cccccchHHHHHHHHHhcCCC-ceEEEEEcCCCCcHHHHHHHHHHhhhhcC-------------CCCeEEEEEeCCCCCH
Q 010355 149 EAFESRMSTLNDVINALKNPD-VHMIGAYGMAGVGKTMLVKEVARQAKADK-------------LFDEVVYAEVSQRPDV 214 (512)
Q Consensus 149 ~~~~gR~~~l~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-------------~f~~~~wv~~~~~~~~ 214 (512)
..++|.+..+..+...+..++ .+...++|+.|+||+++|..+++..--.. .+.-..|+.-.....-
T Consensus 4 ~~iiGq~~~~~~L~~~i~~~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~~~~g 83 (314)
T PRK07399 4 ANLIGQPLAIELLTAAIKQNRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQHQG 83 (314)
T ss_pred HHhCCHHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEeccccccc
Confidence 457899999999999988776 48999999999999999999988753211 1112344432100000
Q ss_pred HHHHHHHHHHhCCC--CCCCCchHHHHHHHHHHh----CCCeEEEEEeCCCCh--hhh----hhhCCCCCCCCeEEEEEe
Q 010355 215 KKIQGQIADKLGLK--FYEESESGRARKLCERLK----KEKKILVILDDIWTN--LDL----ENVGIPFGVRGCRVLMTA 282 (512)
Q Consensus 215 ~~ll~~i~~~l~~~--~~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~--~~~----~~l~~~~~~~gs~iivTt 282 (512)
..+-..-+...+.. ....-..+.+..+.+.+. .+++-++|+|++... ... ..+--| . .+.+|++|
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEP--p-~~~fILi~ 160 (314)
T PRK07399 84 KLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEP--G-NGTLILIA 160 (314)
T ss_pred cccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCC--C-CCeEEEEE
Confidence 00000011111110 001111223445555543 246678999998643 222 233333 2 34455555
Q ss_pred C-CcchhccccCCccceecCCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChhHHHHHHH
Q 010355 283 R-SQDVLSSKMDCQNNFLIGVLNESEARDLFKKLVGDKIENNDLKSLAMNIVKACRGLPIAIVTIAR 348 (512)
Q Consensus 283 R-~~~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~GlPLai~~ia~ 348 (512)
. ...+.....+....+++.+++.++..+.+.+....... ......++..++|.|..+..+..
T Consensus 161 ~~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~~~----~~~~~~l~~~a~Gs~~~al~~l~ 223 (314)
T PRK07399 161 PSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEEIL----NINFPELLALAQGSPGAAIANIE 223 (314)
T ss_pred CChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhccccc----hhHHHHHHHHcCCCHHHHHHHHH
Confidence 4 43443334455679999999999999999987532111 11135789999999976655443
No 111
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=98.12 E-value=7.4e-05 Score=78.48 Aligned_cols=199 Identities=19% Similarity=0.252 Sum_probs=106.5
Q ss_pred cCccccccchHHHHHHH---HHhcC---------CCceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCCC
Q 010355 146 KGYEAFESRMSTLNDVI---NALKN---------PDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPD 213 (512)
Q Consensus 146 ~~~~~~~gR~~~l~~l~---~~L~~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~ 213 (512)
.....+.|-+....++. .++.. ...+-+.++|++|+|||+||+.++...... ++.++.
T Consensus 52 ~~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~-------~~~i~~--- 121 (495)
T TIGR01241 52 VTFKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVP-------FFSISG--- 121 (495)
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCC-------eeeccH---
Confidence 34456677665544443 33321 234568899999999999999999875421 222221
Q ss_pred HHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHhCCCeEEEEEeCCCChh----------------hhhhhCCC----CCC
Q 010355 214 VKKIQGQIADKLGLKFYEESESGRARKLCERLKKEKKILVILDDIWTNL----------------DLENVGIP----FGV 273 (512)
Q Consensus 214 ~~~ll~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~----------------~~~~l~~~----~~~ 273 (512)
..+.... .+. ....+..++.......+++|+||+++... .+..+... ...
T Consensus 122 -~~~~~~~---~g~------~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~ 191 (495)
T TIGR01241 122 -SDFVEMF---VGV------GASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTN 191 (495)
T ss_pred -HHHHHHH---hcc------cHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCC
Confidence 1111110 010 11233444555444578999999995421 01111111 113
Q ss_pred CCeEEEEEeCCcchh----ccccCCccceecCCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCC-hhHHHHHHH
Q 010355 274 RGCRVLMTARSQDVL----SSKMDCQNNFLIGVLNESEARDLFKKLVGDKIENNDLKSLAMNIVKACRGL-PIAIVTIAR 348 (512)
Q Consensus 274 ~gs~iivTtR~~~v~----~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~Gl-PLai~~ia~ 348 (512)
.+..||.||...... .+...-...+.++..+.++-.++|..++......+. .....|++.+.|. |--|..+..
T Consensus 192 ~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~~--~~l~~la~~t~G~sgadl~~l~~ 269 (495)
T TIGR01241 192 TGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAPD--VDLKAVARRTPGFSGADLANLLN 269 (495)
T ss_pred CCeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCcc--hhHHHHHHhCCCCCHHHHHHHHH
Confidence 455566666554321 111122357888888998889999887754322221 1245788888774 344444332
Q ss_pred H---h--c-cC---CHHHHHHHHHHhc
Q 010355 349 A---L--R-NK---NTFEWKSALRELT 366 (512)
Q Consensus 349 ~---L--~-~~---~~~~w~~~l~~l~ 366 (512)
. . + ++ +...+..++....
T Consensus 270 eA~~~a~~~~~~~i~~~~l~~a~~~~~ 296 (495)
T TIGR01241 270 EAALLAARKNKTEITMNDIEEAIDRVI 296 (495)
T ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHh
Confidence 1 1 1 22 5666777666643
No 112
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=98.10 E-value=4.3e-05 Score=77.81 Aligned_cols=171 Identities=18% Similarity=0.230 Sum_probs=95.8
Q ss_pred CccccccchHHHHHHHHHhc----C---------CCceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCCC
Q 010355 147 GYEAFESRMSTLNDVINALK----N---------PDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPD 213 (512)
Q Consensus 147 ~~~~~~gR~~~l~~l~~~L~----~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~ 213 (512)
....+.|.+..+++|.+.+. . ...+.+.|+|++|+|||+||+.+++.... .| +.+...
T Consensus 181 ~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~--~f-----i~V~~s-- 251 (438)
T PTZ00361 181 SYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSA--TF-----LRVVGS-- 251 (438)
T ss_pred CHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCC--CE-----EEEecc--
Confidence 34456788888877776553 1 23467889999999999999999997652 23 222111
Q ss_pred HHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHhCCCeEEEEEeCCCChh----------------hhhhhCCC----CCC
Q 010355 214 VKKIQGQIADKLGLKFYEESESGRARKLCERLKKEKKILVILDDIWTNL----------------DLENVGIP----FGV 273 (512)
Q Consensus 214 ~~~ll~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~----------------~~~~l~~~----~~~ 273 (512)
.+.... ++ .....+..++.....+.+++|+||++.... .+..+... ...
T Consensus 252 --eL~~k~---~G------e~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~ 320 (438)
T PTZ00361 252 --ELIQKY---LG------DGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSR 320 (438)
T ss_pred --hhhhhh---cc------hHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhccc
Confidence 111110 11 111223444444444678999999974321 01111000 113
Q ss_pred CCeEEEEEeCCcchhccc-c---CCccceecCCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCC
Q 010355 274 RGCRVLMTARSQDVLSSK-M---DCQNNFLIGVLNESEARDLFKKLVGDKIENNDLKSLAMNIVKACRGL 339 (512)
Q Consensus 274 ~gs~iivTtR~~~v~~~~-~---~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~Gl 339 (512)
.+.+||+||......... . .....+.+.+.+..+..++|..++......... ....++..+.|+
T Consensus 321 ~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~dv--dl~~la~~t~g~ 388 (438)
T PTZ00361 321 GDVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAEDV--DLEEFIMAKDEL 388 (438)
T ss_pred CCeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCCcCc--CHHHHHHhcCCC
Confidence 456788888755433111 1 223578999999999999999876433222211 134556666554
No 113
>CHL00181 cbbX CbbX; Provisional
Probab=98.09 E-value=9.6e-05 Score=71.53 Aligned_cols=131 Identities=12% Similarity=0.118 Sum_probs=69.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHhCCCe
Q 010355 171 HMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIADKLGLKFYEESESGRARKLCERLKKEKK 250 (512)
Q Consensus 171 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~ 250 (512)
..+.++|++|+||||+|+.++........-...-|+.++. ..+.... .|. .. .....+.+. ...
T Consensus 60 ~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~----~~l~~~~---~g~-----~~-~~~~~~l~~---a~g 123 (287)
T CHL00181 60 LHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTR----DDLVGQY---IGH-----TA-PKTKEVLKK---AMG 123 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecH----HHHHHHH---hcc-----ch-HHHHHHHHH---ccC
Confidence 4588999999999999999988754322111112444431 1222221 111 11 111222222 233
Q ss_pred EEEEEeCCCCh-----------hhhhhhCCCC--CCCCeEEEEEeCCcchhc-------cccCCccceecCCCCHHHHHH
Q 010355 251 ILVILDDIWTN-----------LDLENVGIPF--GVRGCRVLMTARSQDVLS-------SKMDCQNNFLIGVLNESEARD 310 (512)
Q Consensus 251 ~LlVlDdv~~~-----------~~~~~l~~~~--~~~gs~iivTtR~~~v~~-------~~~~~~~~~~l~~L~~~ea~~ 310 (512)
-+|+||++... .....+.... ...+.+||+++....... ........+.+++++.++..+
T Consensus 124 gVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el~~ 203 (287)
T CHL00181 124 GVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEELLQ 203 (287)
T ss_pred CEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHHHH
Confidence 59999999642 1112221111 134566777765332210 011223578999999999999
Q ss_pred HHHHHhC
Q 010355 311 LFKKLVG 317 (512)
Q Consensus 311 Lf~~~~~ 317 (512)
++.+.+.
T Consensus 204 I~~~~l~ 210 (287)
T CHL00181 204 IAKIMLE 210 (287)
T ss_pred HHHHHHH
Confidence 9988774
No 114
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=98.09 E-value=6.9e-05 Score=67.58 Aligned_cols=103 Identities=17% Similarity=0.150 Sum_probs=71.7
Q ss_pred ccCccccccchHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHH
Q 010355 145 IKGYEAFESRMSTLNDVINALKNPDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIADK 224 (512)
Q Consensus 145 ~~~~~~~~gR~~~l~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~i~~~ 224 (512)
|.....+||-++.++.+.-....++.+-+.|.||+|+||||-+..+++..-...+-+++.-+++|....+.-+...|-.-
T Consensus 23 P~~l~dIVGNe~tv~rl~via~~gnmP~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELNASdeRGIDvVRn~IK~F 102 (333)
T KOG0991|consen 23 PSVLQDIVGNEDTVERLSVIAKEGNMPNLIISGPPGTGKTTSILCLARELLGDSYKEAVLELNASDERGIDVVRNKIKMF 102 (333)
T ss_pred chHHHHhhCCHHHHHHHHHHHHcCCCCceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhccCccccccHHHHHHHHHH
Confidence 44456789999999988877778899999999999999999999998876543344566667777666655544443110
Q ss_pred hCCCCCCCCchHHHHHHHHHHhCCCeEEEEEeCCCCh
Q 010355 225 LGLKFYEESESGRARKLCERLKKEKKILVILDDIWTN 261 (512)
Q Consensus 225 l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~ 261 (512)
. +-+-.+-.++.-+||||..++.
T Consensus 103 A--------------Q~kv~lp~grhKIiILDEADSM 125 (333)
T KOG0991|consen 103 A--------------QKKVTLPPGRHKIIILDEADSM 125 (333)
T ss_pred H--------------HhhccCCCCceeEEEeeccchh
Confidence 0 0001112367778999998764
No 115
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=98.07 E-value=0.00015 Score=71.45 Aligned_cols=152 Identities=12% Similarity=0.157 Sum_probs=88.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhhhhcCCC-------------------CeEEEEEeCCCCCHHHHHHHHHHHhCCCCC
Q 010355 170 VHMIGAYGMAGVGKTMLVKEVARQAKADKLF-------------------DEVVYAEVSQRPDVKKIQGQIADKLGLKFY 230 (512)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f-------------------~~~~wv~~~~~~~~~~ll~~i~~~l~~~~~ 230 (512)
.+.+.++|+.|+|||++|..++...--.... .-..|+.-... .
T Consensus 22 ~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~------------------~ 83 (328)
T PRK05707 22 PHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEA------------------D 83 (328)
T ss_pred ceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCC------------------C
Confidence 5678899999999999999998876321100 01222211100 0
Q ss_pred CCCchHHHHHHHHHHh----CCCeEEEEEeCCCCh--hhhhh----hCCCCCCCCeEEEEEeCCcc-hhccccCCcccee
Q 010355 231 EESESGRARKLCERLK----KEKKILVILDDIWTN--LDLEN----VGIPFGVRGCRVLMTARSQD-VLSSKMDCQNNFL 299 (512)
Q Consensus 231 ~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~--~~~~~----l~~~~~~~gs~iivTtR~~~-v~~~~~~~~~~~~ 299 (512)
..-..+.+..+.+.+. .+++-++|||++... ...+. +.-| ..++.+|+||.+.. +.....+....+.
T Consensus 84 ~~i~id~iR~l~~~~~~~~~~~~~kv~iI~~a~~m~~~aaNaLLK~LEEP--p~~~~fiL~t~~~~~ll~TI~SRc~~~~ 161 (328)
T PRK05707 84 KTIKVDQVRELVSFVVQTAQLGGRKVVLIEPAEAMNRNAANALLKSLEEP--SGDTVLLLISHQPSRLLPTIKSRCQQQA 161 (328)
T ss_pred CCCCHHHHHHHHHHHhhccccCCCeEEEECChhhCCHHHHHHHHHHHhCC--CCCeEEEEEECChhhCcHHHHhhceeee
Confidence 0011122333333332 134455678999743 23333 3233 35677777777654 3333344557899
Q ss_pred cCCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChhHHHHH
Q 010355 300 IGVLNESEARDLFKKLVGDKIENNDLKSLAMNIVKACRGLPIAIVTI 346 (512)
Q Consensus 300 l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~GlPLai~~i 346 (512)
+.+++.+++...+....... . ...+..++..++|.|+.+..+
T Consensus 162 ~~~~~~~~~~~~L~~~~~~~--~---~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 162 CPLPSNEESLQWLQQALPES--D---ERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred CCCcCHHHHHHHHHHhcccC--C---hHHHHHHHHHcCCCHHHHHHH
Confidence 99999999999998764211 1 234567889999999865544
No 116
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=98.06 E-value=8e-05 Score=72.12 Aligned_cols=130 Identities=13% Similarity=0.130 Sum_probs=69.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHhCCCeE
Q 010355 172 MIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIADKLGLKFYEESESGRARKLCERLKKEKKI 251 (512)
Q Consensus 172 vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~ 251 (512)
.+.|+|++|+|||++|+.++............-|+.++. .++...+ .|. +. .....+.+.. ..-
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~----~~l~~~~---~g~-----~~-~~~~~~~~~a---~~g 123 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTR----DDLVGQY---IGH-----TA-PKTKEILKRA---MGG 123 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecH----HHHhHhh---ccc-----ch-HHHHHHHHHc---cCc
Confidence 688999999999999998887765322222112444332 1222111 111 11 1122233222 346
Q ss_pred EEEEeCCCCh-----------hhhhhhCCCC--CCCCeEEEEEeCCcchhcc-------ccCCccceecCCCCHHHHHHH
Q 010355 252 LVILDDIWTN-----------LDLENVGIPF--GVRGCRVLMTARSQDVLSS-------KMDCQNNFLIGVLNESEARDL 311 (512)
Q Consensus 252 LlVlDdv~~~-----------~~~~~l~~~~--~~~gs~iivTtR~~~v~~~-------~~~~~~~~~l~~L~~~ea~~L 311 (512)
+|+||++... ..+..+.... ...+.+||+++.....-.. .......+.+++++.++...+
T Consensus 124 vL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~~I 203 (284)
T TIGR02880 124 VLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELLVI 203 (284)
T ss_pred EEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHHHH
Confidence 8999999632 1112221111 1345666666654321100 001135789999999999999
Q ss_pred HHHHhC
Q 010355 312 FKKLVG 317 (512)
Q Consensus 312 f~~~~~ 317 (512)
+.+.+.
T Consensus 204 ~~~~l~ 209 (284)
T TIGR02880 204 AGLMLK 209 (284)
T ss_pred HHHHHH
Confidence 988774
No 117
>CHL00176 ftsH cell division protein; Validated
Probab=98.02 E-value=0.00014 Score=77.70 Aligned_cols=195 Identities=20% Similarity=0.304 Sum_probs=105.8
Q ss_pred cccccchHH---HHHHHHHhcCC---------CceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCCCHHH
Q 010355 149 EAFESRMST---LNDVINALKNP---------DVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKK 216 (512)
Q Consensus 149 ~~~~gR~~~---l~~l~~~L~~~---------~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 216 (512)
..+.|.++. +..++.++... ..+-+.|+|++|+|||+||+.++...... |+.++.. .
T Consensus 183 ~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p-------~i~is~s----~ 251 (638)
T CHL00176 183 RDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVP-------FFSISGS----E 251 (638)
T ss_pred HhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCC-------eeeccHH----H
Confidence 445565544 44454444421 24578999999999999999998865421 2332211 1
Q ss_pred HHHHHHHHhCCCCCCCCchHHHHHHHHHHhCCCeEEEEEeCCCChh----------------hhhhhCCC---C-CCCCe
Q 010355 217 IQGQIADKLGLKFYEESESGRARKLCERLKKEKKILVILDDIWTNL----------------DLENVGIP---F-GVRGC 276 (512)
Q Consensus 217 ll~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~----------------~~~~l~~~---~-~~~gs 276 (512)
+.... .+. ....+..++.......+++|+||+++... .+..+... + ...+.
T Consensus 252 f~~~~---~g~------~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~V 322 (638)
T CHL00176 252 FVEMF---VGV------GAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGV 322 (638)
T ss_pred HHHHh---hhh------hHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCe
Confidence 11100 010 11223444555555688999999995331 12222111 1 14456
Q ss_pred EEEEEeCCcchhc-ccc---CCccceecCCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCC-ChhHHHHHHHH--
Q 010355 277 RVLMTARSQDVLS-SKM---DCQNNFLIGVLNESEARDLFKKLVGDKIENNDLKSLAMNIVKACRG-LPIAIVTIARA-- 349 (512)
Q Consensus 277 ~iivTtR~~~v~~-~~~---~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~G-lPLai~~ia~~-- 349 (512)
.||.||....... ... .-...+.+.+.+.++-.++|+.++......+ ......|++.+.| .+--|..+...
T Consensus 323 iVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~~~--d~~l~~lA~~t~G~sgaDL~~lvneAa 400 (638)
T CHL00176 323 IVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKLSP--DVSLELIARRTPGFSGADLANLLNEAA 400 (638)
T ss_pred eEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhcccch--hHHHHHHHhcCCCCCHHHHHHHHHHHH
Confidence 6777776543221 111 1235788888899999999988875432222 2345678888887 33333333221
Q ss_pred -h--c-cC---CHHHHHHHHHHh
Q 010355 350 -L--R-NK---NTFEWKSALREL 365 (512)
Q Consensus 350 -L--~-~~---~~~~w~~~l~~l 365 (512)
+ + ++ +......++.+.
T Consensus 401 l~a~r~~~~~It~~dl~~Ai~rv 423 (638)
T CHL00176 401 ILTARRKKATITMKEIDTAIDRV 423 (638)
T ss_pred HHHHHhCCCCcCHHHHHHHHHHH
Confidence 1 1 21 556666666654
No 118
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.00 E-value=2.7e-05 Score=82.58 Aligned_cols=52 Identities=15% Similarity=0.218 Sum_probs=42.8
Q ss_pred cccCccccccchHHHHHHHHHhcCC-----CceEEEEEcCCCCcHHHHHHHHHHhhh
Q 010355 144 SIKGYEAFESRMSTLNDVINALKNP-----DVHMIGAYGMAGVGKTMLVKEVARQAK 195 (512)
Q Consensus 144 ~~~~~~~~~gR~~~l~~l~~~L~~~-----~~~vi~I~G~gGiGKTtLa~~v~~~~~ 195 (512)
.|.....++|..+.+..+..|+... ..++++|+|++|+||||+++.++....
T Consensus 79 rP~~ldel~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l~ 135 (637)
T TIGR00602 79 KPETQHELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKELG 135 (637)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHhh
Confidence 4566778899999999999888732 345799999999999999999998654
No 119
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.00 E-value=3.4e-05 Score=65.82 Aligned_cols=89 Identities=26% Similarity=0.142 Sum_probs=51.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHhCCC
Q 010355 170 VHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIADKLGLKFYEESESGRARKLCERLKKEK 249 (512)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k 249 (512)
.+.+.|+|++|+||||+++.++...... ...++++..+........... ...................+.......+
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPP--GGGVIYIDGEDILEEVLDQLL-LIIVGGKKASGSGELRLRLALALARKLK 78 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCC--CCCEEEECCEEccccCHHHHH-hhhhhccCCCCCHHHHHHHHHHHHHhcC
Confidence 3678999999999999999999887643 234566655443322111111 1111111111222333445555555434
Q ss_pred eEEEEEeCCCCh
Q 010355 250 KILVILDDIWTN 261 (512)
Q Consensus 250 ~~LlVlDdv~~~ 261 (512)
..+|++|++...
T Consensus 79 ~~viiiDei~~~ 90 (148)
T smart00382 79 PDVLILDEITSL 90 (148)
T ss_pred CCEEEEECCccc
Confidence 599999999765
No 120
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.95 E-value=0.00024 Score=73.07 Aligned_cols=177 Identities=11% Similarity=0.133 Sum_probs=100.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHhCCC
Q 010355 170 VHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIADKLGLKFYEESESGRARKLCERLKKEK 249 (512)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k 249 (512)
...+.|+|+.|+|||+|++.+++..... ...+++++ ...+...+...+... ....+...+. .
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~l~~~--~~~v~yi~------~~~f~~~~~~~l~~~--------~~~~f~~~~~--~ 202 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHALRES--GGKILYVR------SELFTEHLVSAIRSG--------EMQRFRQFYR--N 202 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHHHc--CCCEEEee------HHHHHHHHHHHHhcc--------hHHHHHHHcc--c
Confidence 3568899999999999999999987632 23455654 234444555444321 1122333332 3
Q ss_pred eEEEEEeCCCChhh----hhhhCCCC---CCCCeEEEEEeCCcch-----h---ccccCCccceecCCCCHHHHHHHHHH
Q 010355 250 KILVILDDIWTNLD----LENVGIPF---GVRGCRVLMTARSQDV-----L---SSKMDCQNNFLIGVLNESEARDLFKK 314 (512)
Q Consensus 250 ~~LlVlDdv~~~~~----~~~l~~~~---~~~gs~iivTtR~~~v-----~---~~~~~~~~~~~l~~L~~~ea~~Lf~~ 314 (512)
.-+|+|||+..... ...+...+ ...|..||+||..... . ...+.....+.+.+++.++...++.+
T Consensus 203 ~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~ 282 (445)
T PRK12422 203 VDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLER 282 (445)
T ss_pred CCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHHH
Confidence 45889999854321 11111111 1345678888865321 0 11123346889999999999999988
Q ss_pred HhCCCCCCchhHHHHHHHHHHcCCCh-hHHHHHHHH--------hccC--CHHHHHHHHHHh
Q 010355 315 LVGDKIENNDLKSLAMNIVKACRGLP-IAIVTIARA--------LRNK--NTFEWKSALREL 365 (512)
Q Consensus 315 ~~~~~~~~~~~~~~~~~I~~~~~GlP-Lai~~ia~~--------L~~~--~~~~w~~~l~~l 365 (512)
.+..... .--.++..-|+..+.|.- -.+..+-.+ +.+. +...-+.++..+
T Consensus 283 k~~~~~~-~l~~evl~~la~~~~~dir~L~g~l~~l~~~~a~~~~~~~~i~~~~~~~~l~~~ 343 (445)
T PRK12422 283 KAEALSI-RIEETALDFLIEALSSNVKSLLHALTLLAKRVAYKKLSHQLLYVDDIKALLHDV 343 (445)
T ss_pred HHHHcCC-CCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHh
Confidence 7743211 111356666777777554 222222222 1122 566667777654
No 121
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.95 E-value=0.00028 Score=72.21 Aligned_cols=170 Identities=15% Similarity=0.214 Sum_probs=94.5
Q ss_pred ccccccchHHHHHHHHHhc---C---------CCceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCCCHH
Q 010355 148 YEAFESRMSTLNDVINALK---N---------PDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVK 215 (512)
Q Consensus 148 ~~~~~gR~~~l~~l~~~L~---~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 215 (512)
...+-|-+..+.+|...+. . ...+-|.+||++|+|||.||+.++....+- ++.++.+
T Consensus 189 f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vP-------f~~isAp---- 257 (802)
T KOG0733|consen 189 FSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVP-------FLSISAP---- 257 (802)
T ss_pred hhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCc-------eEeecch----
Confidence 3456677887777776554 1 235778899999999999999999988753 3343332
Q ss_pred HHHHHHHHHhCCCCCCCCchHHHHHHHHHHhCCCeEEEEEeCCCChh----------------h----hhhhCCCCC-CC
Q 010355 216 KIQGQIADKLGLKFYEESESGRARKLCERLKKEKKILVILDDIWTNL----------------D----LENVGIPFG-VR 274 (512)
Q Consensus 216 ~ll~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~----------------~----~~~l~~~~~-~~ 274 (512)
.|+..+. ......+..++..-.+.-+|+++||+++-.. + ++.+...-. +.
T Consensus 258 ----eivSGvS-----GESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~~g~ 328 (802)
T KOG0733|consen 258 ----EIVSGVS-----GESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEKTKGD 328 (802)
T ss_pred ----hhhcccC-----cccHHHHHHHHHHHhccCCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhcccccccCCC
Confidence 1222211 1233456677777777789999999985320 0 111111111 33
Q ss_pred CeEEEEEeCCcchh----ccccCCccceecCCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCC
Q 010355 275 GCRVLMTARSQDVL----SSKMDCQNNFLIGVLNESEARDLFKKLVGDKIENNDLKSLAMNIVKACRGL 339 (512)
Q Consensus 275 gs~iivTtR~~~v~----~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~Gl 339 (512)
+..||-+|..+... .+...-.+.|.|.--+...-.++++..+.+-.....+ -..+|++.+-|.
T Consensus 329 ~VlVIgATnRPDslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g~~--d~~qlA~lTPGf 395 (802)
T KOG0733|consen 329 PVLVIGATNRPDSLDPALRRAGRFDREICLGVPSETAREEILRIICRGLRLSGDF--DFKQLAKLTPGF 395 (802)
T ss_pred CeEEEecCCCCcccCHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCCCc--CHHHHHhcCCCc
Confidence 44444444333322 1112223567777666666666666655322221111 134566666654
No 122
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=97.91 E-value=0.00079 Score=67.12 Aligned_cols=192 Identities=15% Similarity=0.169 Sum_probs=121.7
Q ss_pred chHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHH-HHHHHhhhhcCCCCeEEEEEeCCC---CCHHHHHHHHHHHhCCCC
Q 010355 154 RMSTLNDVINALKNPDVHMIGAYGMAGVGKTMLV-KEVARQAKADKLFDEVVYAEVSQR---PDVKKIQGQIADKLGLKF 229 (512)
Q Consensus 154 R~~~l~~l~~~L~~~~~~vi~I~G~gGiGKTtLa-~~v~~~~~~~~~f~~~~wv~~~~~---~~~~~ll~~i~~~l~~~~ 229 (512)
|.+.+++|..||....-..|.|.||-|+||+.|+ .++....+ .++.+++.+- .+-..++..++.++|.-+
T Consensus 1 R~e~~~~L~~wL~e~~~TFIvV~GPrGSGK~elV~d~~L~~r~------~vL~IDC~~i~~ar~D~~~I~~lA~qvGY~P 74 (431)
T PF10443_consen 1 RKEAIEQLKSWLNENPNTFIVVQGPRGSGKRELVMDHVLKDRK------NVLVIDCDQIVKARGDAAFIKNLASQVGYFP 74 (431)
T ss_pred CchHHHHHHHHHhcCCCeEEEEECCCCCCccHHHHHHHHhCCC------CEEEEEChHhhhccChHHHHHHHHHhcCCCc
Confidence 5677899999999877889999999999999999 66665432 2666766432 344556666666665321
Q ss_pred -----------------------CC--CCchHHHH--------HHHH-----H--------------Hh--CCCeEEEEE
Q 010355 230 -----------------------YE--ESESGRAR--------KLCE-----R--------------LK--KEKKILVIL 255 (512)
Q Consensus 230 -----------------------~~--~~~~~~~~--------~l~~-----~--------------l~--~~k~~LlVl 255 (512)
.. .+....+. .|+. + |. ..++=+|||
T Consensus 75 vFsw~nSiss~IDLa~qGltGqKaGfSes~e~Ql~~IL~~t~~ALr~ial~~~~~~~~~~~l~e~~yl~~hPe~~PVVVI 154 (431)
T PF10443_consen 75 VFSWMNSISSFIDLAVQGLTGQKAGFSESLETQLKKILQTTATALRDIALSNRKKDDKDANLKEEDYLEAHPERRPVVVI 154 (431)
T ss_pred chHHHHHHHHHHHHHHhhccccccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhccccccccCchhhhhhCCccCCEEEE
Confidence 00 11111111 1111 0 00 012568999
Q ss_pred eCCCCh-----------hhhhhhCCCCCCCCeEEEEEeCCcchhc-----cccCCccceecCCCCHHHHHHHHHHHhCCC
Q 010355 256 DDIWTN-----------LDLENVGIPFGVRGCRVLMTARSQDVLS-----SKMDCQNNFLIGVLNESEARDLFKKLVGDK 319 (512)
Q Consensus 256 Ddv~~~-----------~~~~~l~~~~~~~gs~iivTtR~~~v~~-----~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~ 319 (512)
||+... .+|..... .++--+||++|-+..... ......+.+.|.-.+++.|..+..+++...
T Consensus 155 dnF~~k~~~~~~iy~~laeWAa~Lv--~~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~yV~~~L~~~ 232 (431)
T PF10443_consen 155 DNFLHKAEENDFIYDKLAEWAASLV--QNNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQYVLSQLDED 232 (431)
T ss_pred cchhccCcccchHHHHHHHHHHHHH--hcCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHHHHHHhccc
Confidence 998432 22333211 145567888887654431 112345788999999999999999988533
Q ss_pred CCC-------------------chhHHHHHHHHHHcCCChhHHHHHHHHhccC
Q 010355 320 IEN-------------------NDLKSLAMNIVKACRGLPIAIVTIARALRNK 353 (512)
Q Consensus 320 ~~~-------------------~~~~~~~~~I~~~~~GlPLai~~ia~~L~~~ 353 (512)
... .....-....+..+||--.=+..+++.++.-
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiksG 285 (431)
T PF10443_consen 233 TEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKSG 285 (431)
T ss_pred ccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHcC
Confidence 110 1233456678899999999999999998843
No 123
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.88 E-value=0.00024 Score=72.14 Aligned_cols=134 Identities=22% Similarity=0.171 Sum_probs=81.1
Q ss_pred chHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCC
Q 010355 154 RMSTLNDVINALKNPDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIADKLGLKFYEES 233 (512)
Q Consensus 154 R~~~l~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~i~~~l~~~~~~~~ 233 (512)
|..-+.++...+..... ++.|.|+-++|||||++.+....... .++++.........-+.+..
T Consensus 22 ~~~~~~~l~~~~~~~~~-i~~i~GpR~~GKTtll~~l~~~~~~~-----~iy~~~~d~~~~~~~l~d~~----------- 84 (398)
T COG1373 22 RRKLLPRLIKKLDLRPF-IILILGPRQVGKTTLLKLLIKGLLEE-----IIYINFDDLRLDRIELLDLL----------- 84 (398)
T ss_pred HHhhhHHHHhhcccCCc-EEEEECCccccHHHHHHHHHhhCCcc-----eEEEEecchhcchhhHHHHH-----------
Confidence 44555666666654433 99999999999999997766655422 45554332211111111111
Q ss_pred chHHHHHHHHHHhCCCeEEEEEeCCCChhhhhhhCCCCC--CCCeEEEEEeCCcchh-----ccccCCccceecCCCCHH
Q 010355 234 ESGRARKLCERLKKEKKILVILDDIWTNLDLENVGIPFG--VRGCRVLMTARSQDVL-----SSKMDCQNNFLIGVLNES 306 (512)
Q Consensus 234 ~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~~~~l~~~~~--~~gs~iivTtR~~~v~-----~~~~~~~~~~~l~~L~~~ 306 (512)
..+...-. .++.+|+||.|.....|....-.+. ++. +|++|+-+.... ....+....+.+-||+..
T Consensus 85 -----~~~~~~~~-~~~~yifLDEIq~v~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF~ 157 (398)
T COG1373 85 -----RAYIELKE-REKSYIFLDEIQNVPDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYPLSFR 157 (398)
T ss_pred -----HHHHHhhc-cCCceEEEecccCchhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCceeEEECCCCHH
Confidence 11111111 2668999999999988877532222 333 788888776543 223455678999999999
Q ss_pred HHHHH
Q 010355 307 EARDL 311 (512)
Q Consensus 307 ea~~L 311 (512)
|...+
T Consensus 158 Efl~~ 162 (398)
T COG1373 158 EFLKL 162 (398)
T ss_pred HHHhh
Confidence 98764
No 124
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=97.85 E-value=0.00085 Score=65.64 Aligned_cols=170 Identities=16% Similarity=0.161 Sum_probs=96.4
Q ss_pred HHHHHHHHhcCCCc-eEEEEEcCCCCcHHHHHHHHHHhhhhcCCCC----------------eEEEEEeCCCCCHHHHHH
Q 010355 157 TLNDVINALKNPDV-HMIGAYGMAGVGKTMLVKEVARQAKADKLFD----------------EVVYAEVSQRPDVKKIQG 219 (512)
Q Consensus 157 ~l~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~----------------~~~wv~~~~~~~~~~ll~ 219 (512)
..+.|...+..++. +.+.++|+.|+||+++|..++...--..... -..|+.......
T Consensus 12 ~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~p~~~------ 85 (319)
T PRK08769 12 AYDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFIPNRT------ 85 (319)
T ss_pred HHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecCCCcc------
Confidence 35566666665554 5689999999999999999987653211110 012221000000
Q ss_pred HHHHHhCCCCCCCCchHHHHHHHHHHh----CCCeEEEEEeCCCCh--hh----hhhhCCCCCCCCeEEEEEeCCcc-hh
Q 010355 220 QIADKLGLKFYEESESGRARKLCERLK----KEKKILVILDDIWTN--LD----LENVGIPFGVRGCRVLMTARSQD-VL 288 (512)
Q Consensus 220 ~i~~~l~~~~~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~--~~----~~~l~~~~~~~gs~iivTtR~~~-v~ 288 (512)
+......-..+.+..+.+.+. .+++-++|||++... .. +..+--| ..++.+|++|.+.. +.
T Consensus 86 ------~~k~~~~I~idqIR~l~~~~~~~p~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEP--p~~~~fiL~~~~~~~lL 157 (319)
T PRK08769 86 ------GDKLRTEIVIEQVREISQKLALTPQYGIAQVVIVDPADAINRAACNALLKTLEEP--SPGRYLWLISAQPARLP 157 (319)
T ss_pred ------cccccccccHHHHHHHHHHHhhCcccCCcEEEEeccHhhhCHHHHHHHHHHhhCC--CCCCeEEEEECChhhCc
Confidence 000000001223333444332 245679999998744 22 2333233 45676777776543 33
Q ss_pred ccccCCccceecCCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChhHHHHHH
Q 010355 289 SSKMDCQNNFLIGVLNESEARDLFKKLVGDKIENNDLKSLAMNIVKACRGLPIAIVTIA 347 (512)
Q Consensus 289 ~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~GlPLai~~ia 347 (512)
....+....+.+.+++.+++...+... + .. ...+..++..++|.|+.+..+.
T Consensus 158 pTIrSRCq~i~~~~~~~~~~~~~L~~~-~---~~---~~~a~~~~~l~~G~p~~A~~~~ 209 (319)
T PRK08769 158 ATIRSRCQRLEFKLPPAHEALAWLLAQ-G---VS---ERAAQEALDAARGHPGLAAQWL 209 (319)
T ss_pred hHHHhhheEeeCCCcCHHHHHHHHHHc-C---CC---hHHHHHHHHHcCCCHHHHHHHh
Confidence 333455578899999999999888754 1 11 1235678999999998765443
No 125
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.85 E-value=0.0012 Score=61.01 Aligned_cols=187 Identities=17% Similarity=0.180 Sum_probs=109.0
Q ss_pred HHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEe-CCCCCHHHHHHHHHHHhCCCCCCCCch
Q 010355 157 TLNDVINALKNPDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEV-SQRPDVKKIQGQIADKLGLKFYEESES 235 (512)
Q Consensus 157 ~l~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~-~~~~~~~~ll~~i~~~l~~~~~~~~~~ 235 (512)
.+..+...+ ..+.+++.|+|.-|+|||.+.+.+....... .++-+.+ .+..+...+...++..+..++. ....
T Consensus 39 ~l~~l~~~i-~d~qg~~~vtGevGsGKTv~~Ral~~s~~~d----~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~-~~~~ 112 (269)
T COG3267 39 ALLMLHAAI-ADGQGILAVTGEVGSGKTVLRRALLASLNED----QVAVVVIDKPTLSDATLLEAIVADLESQPK-VNVN 112 (269)
T ss_pred HHHHHHHHH-hcCCceEEEEecCCCchhHHHHHHHHhcCCC----ceEEEEecCcchhHHHHHHHHHHHhccCcc-chhH
Confidence 344444333 3455799999999999999999555544321 1121333 3456778888888888876322 2211
Q ss_pred ----HHHHHHHHHHhCCCe-EEEEEeCCCCh--hhhhhhCCCCC--CCC---eEEEEEeCCcc-------hhccccCCcc
Q 010355 236 ----GRARKLCERLKKEKK-ILVILDDIWTN--LDLENVGIPFG--VRG---CRVLMTARSQD-------VLSSKMDCQN 296 (512)
Q Consensus 236 ----~~~~~l~~~l~~~k~-~LlVlDdv~~~--~~~~~l~~~~~--~~g---s~iivTtR~~~-------v~~~~~~~~~ 296 (512)
.....+....+++++ ..+++|+.... ..++.++...+ ..+ -+|+.....+- +.........
T Consensus 113 ~~~e~~~~~L~al~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ 192 (269)
T COG3267 113 AVLEQIDRELAALVKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQRID 192 (269)
T ss_pred HHHHHHHHHHHHHHHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhheEE
Confidence 122334444455666 99999998643 33433322111 111 22333322211 0010111223
Q ss_pred c-eecCCCCHHHHHHHHHHHhCCCCCCch--hHHHHHHHHHHcCCChhHHHHHHHH
Q 010355 297 N-FLIGVLNESEARDLFKKLVGDKIENND--LKSLAMNIVKACRGLPIAIVTIARA 349 (512)
Q Consensus 297 ~-~~l~~L~~~ea~~Lf~~~~~~~~~~~~--~~~~~~~I~~~~~GlPLai~~ia~~ 349 (512)
+ |.+.|++.++...++..++.....+.. ..+....|.....|.|.+|..++..
T Consensus 193 ir~~l~P~~~~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg~P~lin~~~~~ 248 (269)
T COG3267 193 IRIELPPLTEAETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQGIPRLINNLATL 248 (269)
T ss_pred EEEecCCcChHHHHHHHHHHHhccCCCcccCChhHHHHHHHHhccchHHHHHHHHH
Confidence 3 999999999999999888753322211 2356778999999999999888754
No 126
>PRK08116 hypothetical protein; Validated
Probab=97.84 E-value=7.8e-05 Score=71.45 Aligned_cols=100 Identities=18% Similarity=0.207 Sum_probs=59.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHhCCCe
Q 010355 171 HMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIADKLGLKFYEESESGRARKLCERLKKEKK 250 (512)
Q Consensus 171 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~ 250 (512)
..+.|+|.+|+|||.||..+++....+ ...+++++ ..+++..+........ ......+.+.+.. -
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~~--~~~v~~~~------~~~ll~~i~~~~~~~~-----~~~~~~~~~~l~~--~ 179 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIEK--GVPVIFVN------FPQLLNRIKSTYKSSG-----KEDENEIIRSLVN--A 179 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEEE------HHHHHHHHHHHHhccc-----cccHHHHHHHhcC--C
Confidence 458899999999999999999988643 34566665 3445555554432211 1112334455543 2
Q ss_pred EEEEEeCCC--Chhhhhh--hCCCCC---CCCeEEEEEeCCc
Q 010355 251 ILVILDDIW--TNLDLEN--VGIPFG---VRGCRVLMTARSQ 285 (512)
Q Consensus 251 ~LlVlDdv~--~~~~~~~--l~~~~~---~~gs~iivTtR~~ 285 (512)
=||||||+. ....|.. +...+. ..+..+||||...
T Consensus 180 dlLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~~ 221 (268)
T PRK08116 180 DLLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNLS 221 (268)
T ss_pred CEEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 389999994 2223322 111111 4566788988754
No 127
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.83 E-value=0.00067 Score=69.53 Aligned_cols=129 Identities=19% Similarity=0.320 Sum_probs=82.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHhCC
Q 010355 169 DVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIADKLGLKFYEESESGRARKLCERLKKE 248 (512)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 248 (512)
...-|.+||++|+|||-||++|++..... |+++..+ +++..- +| .....+..++++-+..
T Consensus 544 ~PsGvLL~GPPGCGKTLlAKAVANEag~N-------FisVKGP----ELlNkY---VG------ESErAVR~vFqRAR~s 603 (802)
T KOG0733|consen 544 APSGVLLCGPPGCGKTLLAKAVANEAGAN-------FISVKGP----ELLNKY---VG------ESERAVRQVFQRARAS 603 (802)
T ss_pred CCCceEEeCCCCccHHHHHHHHhhhccCc-------eEeecCH----HHHHHH---hh------hHHHHHHHHHHHhhcC
Confidence 35668899999999999999999988743 4665543 222211 11 2234566777777778
Q ss_pred CeEEEEEeCCCChh-------------hhhhhCCCC----CCCCeEEEEEeCCcchh-c---cccCCccceecCCCCHHH
Q 010355 249 KKILVILDDIWTNL-------------DLENVGIPF----GVRGCRVLMTARSQDVL-S---SKMDCQNNFLIGVLNESE 307 (512)
Q Consensus 249 k~~LlVlDdv~~~~-------------~~~~l~~~~----~~~gs~iivTtR~~~v~-~---~~~~~~~~~~l~~L~~~e 307 (512)
-+|+|+||.++... ..+++..-+ ...|.-||-.|..+.+. . +...-...+.+..-+.++
T Consensus 604 aPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~e 683 (802)
T KOG0733|consen 604 APCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEE 683 (802)
T ss_pred CCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCCCHHH
Confidence 89999999986331 122321111 14566677766655543 1 111223567777778888
Q ss_pred HHHHHHHHhC
Q 010355 308 ARDLFKKLVG 317 (512)
Q Consensus 308 a~~Lf~~~~~ 317 (512)
-..+++....
T Consensus 684 R~~ILK~~tk 693 (802)
T KOG0733|consen 684 RVAILKTITK 693 (802)
T ss_pred HHHHHHHHhc
Confidence 8899988876
No 128
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.83 E-value=3.5e-05 Score=65.32 Aligned_cols=68 Identities=22% Similarity=0.288 Sum_probs=40.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHhCCC-eE
Q 010355 173 IGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIADKLGLKFYEESESGRARKLCERLKKEK-KI 251 (512)
Q Consensus 173 i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k-~~ 251 (512)
|.|+|++|+|||++|+.+++.... .++.++.+...+. ........+..+........ +.
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~-----~~~~i~~~~~~~~---------------~~~~~~~~i~~~~~~~~~~~~~~ 60 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGF-----PFIEIDGSELISS---------------YAGDSEQKIRDFFKKAKKSAKPC 60 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTS-----EEEEEETTHHHTS---------------STTHHHHHHHHHHHHHHHTSTSE
T ss_pred CEEECcCCCCeeHHHHHHHhhccc-----ccccccccccccc---------------cccccccccccccccccccccce
Confidence 579999999999999999998752 2344443321100 11111222333334433333 89
Q ss_pred EEEEeCCCC
Q 010355 252 LVILDDIWT 260 (512)
Q Consensus 252 LlVlDdv~~ 260 (512)
+|+|||++.
T Consensus 61 vl~iDe~d~ 69 (132)
T PF00004_consen 61 VLFIDEIDK 69 (132)
T ss_dssp EEEEETGGG
T ss_pred eeeeccchh
Confidence 999999953
No 129
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=97.82 E-value=0.002 Score=71.45 Aligned_cols=155 Identities=22% Similarity=0.216 Sum_probs=81.3
Q ss_pred ccccchHHHHHHHHHhc------CCCceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCCCHHHHHHHHHH
Q 010355 150 AFESRMSTLNDVINALK------NPDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIAD 223 (512)
Q Consensus 150 ~~~gR~~~l~~l~~~L~------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~i~~ 223 (512)
.++|.+...+.|..++. ..+.+++.++|++|+|||++|+.+++.... .|. -++++...+...+...
T Consensus 321 ~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l~~--~~~---~i~~~~~~~~~~i~g~--- 392 (775)
T TIGR00763 321 DHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKALNR--KFV---RFSLGGVRDEAEIRGH--- 392 (775)
T ss_pred hcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHhcC--CeE---EEeCCCcccHHHHcCC---
Confidence 46688888888777654 223468999999999999999999988752 232 2233332222222110
Q ss_pred HhCCCCCCCCchHHHHHHHHHHhCCCeEEEEEeCCCChhh---------hhhhCC--------------CCCCCCeEEEE
Q 010355 224 KLGLKFYEESESGRARKLCERLKKEKKILVILDDIWTNLD---------LENVGI--------------PFGVRGCRVLM 280 (512)
Q Consensus 224 ~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~---------~~~l~~--------------~~~~~gs~iiv 280 (512)
...............+. .... ++-+|+||.++.... +-.+.- +....+..+|.
T Consensus 393 --~~~~~g~~~g~i~~~l~-~~~~-~~~villDEidk~~~~~~~~~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~v~~I~ 468 (775)
T TIGR00763 393 --RRTYVGAMPGRIIQGLK-KAKT-KNPLFLLDEIDKIGSSFRGDPASALLEVLDPEQNNAFSDHYLDVPFDLSKVIFIA 468 (775)
T ss_pred --CCceeCCCCchHHHHHH-HhCc-CCCEEEEechhhcCCccCCCHHHHHHHhcCHHhcCccccccCCceeccCCEEEEE
Confidence 00000011111122222 2222 334789999864311 111100 00112344555
Q ss_pred EeCCcchh-ccccCCccceecCCCCHHHHHHHHHHHh
Q 010355 281 TARSQDVL-SSKMDCQNNFLIGVLNESEARDLFKKLV 316 (512)
Q Consensus 281 TtR~~~v~-~~~~~~~~~~~l~~L~~~ea~~Lf~~~~ 316 (512)
||...... ........++.+.+++.++-.+++.+++
T Consensus 469 TtN~~~~i~~~L~~R~~vi~~~~~~~~e~~~I~~~~l 505 (775)
T TIGR00763 469 TANSIDTIPRPLLDRMEVIELSGYTEEEKLEIAKKYL 505 (775)
T ss_pred ecCCchhCCHHHhCCeeEEecCCCCHHHHHHHHHHHH
Confidence 55443221 2223444688999999998888887654
No 130
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=97.80 E-value=0.0017 Score=63.70 Aligned_cols=171 Identities=13% Similarity=0.124 Sum_probs=94.6
Q ss_pred HHHHHHHhcCCC-ceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhC-----CCC--
Q 010355 158 LNDVINALKNPD-VHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIADKLG-----LKF-- 229 (512)
Q Consensus 158 l~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~i~~~l~-----~~~-- 229 (512)
-+.|...+..++ .+.+.++|+.|+||+++|..++...--...... ..++.-..-+.+...-. +.+
T Consensus 11 ~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~-------~~Cg~C~sC~~~~~g~HPD~~~i~p~~ 83 (325)
T PRK06871 11 YQQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGD-------QPCGQCHSCHLFQAGNHPDFHILEPID 83 (325)
T ss_pred HHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCC-------CCCCCCHHHHHHhcCCCCCEEEEcccc
Confidence 345666666554 477889999999999999999887532111100 00000000011100000 000
Q ss_pred CCCCchHHHHHHHHHHh----CCCeEEEEEeCCCCh--hhhhh----hCCCCCCCCeEEEEEeCCcc-hhccccCCccce
Q 010355 230 YEESESGRARKLCERLK----KEKKILVILDDIWTN--LDLEN----VGIPFGVRGCRVLMTARSQD-VLSSKMDCQNNF 298 (512)
Q Consensus 230 ~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~--~~~~~----l~~~~~~~gs~iivTtR~~~-v~~~~~~~~~~~ 298 (512)
...-..+.+..+.+.+. .+++-++|+|++... ...+. +--| .+++.+|++|.+.. +.....+....+
T Consensus 84 ~~~I~id~iR~l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEP--p~~~~fiL~t~~~~~llpTI~SRC~~~ 161 (325)
T PRK06871 84 NKDIGVDQVREINEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEP--RPNTYFLLQADLSAALLPTIYSRCQTW 161 (325)
T ss_pred CCCCCHHHHHHHHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcCC--CCCeEEEEEECChHhCchHHHhhceEE
Confidence 00011223334444432 256678889999754 22333 3233 45677777776653 333334455789
Q ss_pred ecCCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChhHH
Q 010355 299 LIGVLNESEARDLFKKLVGDKIENNDLKSLAMNIVKACRGLPIAI 343 (512)
Q Consensus 299 ~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~GlPLai 343 (512)
.+.+++.+++.+.+....... ...+...+..++|.|+.+
T Consensus 162 ~~~~~~~~~~~~~L~~~~~~~------~~~~~~~~~l~~g~p~~A 200 (325)
T PRK06871 162 LIHPPEEQQALDWLQAQSSAE------ISEILTALRINYGRPLLA 200 (325)
T ss_pred eCCCCCHHHHHHHHHHHhccC------hHHHHHHHHHcCCCHHHH
Confidence 999999999999888764211 113556788999999644
No 131
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.76 E-value=0.00046 Score=73.49 Aligned_cols=168 Identities=20% Similarity=0.256 Sum_probs=104.5
Q ss_pred hHHHHHHHHHhcCC---------CceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHh
Q 010355 155 MSTLNDVINALKNP---------DVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIADKL 225 (512)
Q Consensus 155 ~~~l~~l~~~L~~~---------~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~i~~~l 225 (512)
..++.+++..|.++ -++-+.|+|++|+|||-||++++-...+- |++++.. + +...+
T Consensus 320 K~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVP-------F~svSGS----E----FvE~~ 384 (774)
T KOG0731|consen 320 KEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVP-------FFSVSGS----E----FVEMF 384 (774)
T ss_pred HHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCc-------eeeechH----H----HHHHh
Confidence 45677777777743 25778899999999999999999877643 4455432 1 11111
Q ss_pred CCCCCCCCchHHHHHHHHHHhCCCeEEEEEeCCCCh-----------------hhhhhhCCCCC----CCCeEEEEEeCC
Q 010355 226 GLKFYEESESGRARKLCERLKKEKKILVILDDIWTN-----------------LDLENVGIPFG----VRGCRVLMTARS 284 (512)
Q Consensus 226 ~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~-----------------~~~~~l~~~~~----~~gs~iivTtR~ 284 (512)
.. .....+..++...+...+++|.+|.+... ..++++..-.. ..+..+|-+|..
T Consensus 385 ~g-----~~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~vi~~a~tnr 459 (774)
T KOG0731|consen 385 VG-----VGASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKGVIVLAATNR 459 (774)
T ss_pred cc-----cchHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCCcEEEEeccCC
Confidence 11 11334566777777778999999987532 12333321111 334455556666
Q ss_pred cchhcc----ccCCccceecCCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChhHH
Q 010355 285 QDVLSS----KMDCQNNFLIGVLNESEARDLFKKLVGDKIENNDLKSLAMNIVKACRGLPIAI 343 (512)
Q Consensus 285 ~~v~~~----~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~GlPLai 343 (512)
..+.+. ...-...+.+..-+.....++|.-++.......+...+.+ |+..+.|++=|.
T Consensus 460 ~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~~e~~dl~~-~a~~t~gf~gad 521 (774)
T KOG0731|consen 460 PDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLDDEDVDLSK-LASLTPGFSGAD 521 (774)
T ss_pred ccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCCcchhhHHH-HHhcCCCCcHHH
Confidence 655421 1122357788888888889999988865444344455665 888888887553
No 132
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=97.76 E-value=0.0019 Score=71.02 Aligned_cols=156 Identities=18% Similarity=0.232 Sum_probs=88.5
Q ss_pred cccccchHHHHHHHHHhc------CCCceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCCCHHHHHHHHH
Q 010355 149 EAFESRMSTLNDVINALK------NPDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIA 222 (512)
Q Consensus 149 ~~~~gR~~~l~~l~~~L~------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~i~ 222 (512)
..++|.+...+.|+.+|. .....+++++|++|+||||+++.++..... .| +-++++...+...+...-.
T Consensus 322 ~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l~~--~~---~~i~~~~~~d~~~i~g~~~ 396 (784)
T PRK10787 322 TDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGR--KY---VRMALGGVRDEAEIRGHRR 396 (784)
T ss_pred hhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHhCC--CE---EEEEcCCCCCHHHhccchh
Confidence 447788888888988776 234578999999999999999999987652 23 2233444333332221110
Q ss_pred HHhCCCCCCCCchHHHHHHHHHHhCCCeEEEEEeCCCChhh---------hhhh--------------CCCCCCCCeEEE
Q 010355 223 DKLGLKFYEESESGRARKLCERLKKEKKILVILDDIWTNLD---------LENV--------------GIPFGVRGCRVL 279 (512)
Q Consensus 223 ~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~---------~~~l--------------~~~~~~~gs~ii 279 (512)
...|. ......+.+. .... .+-+|+||.+..... +-.+ ..++...+..+|
T Consensus 397 ~~~g~-----~~G~~~~~l~-~~~~-~~~villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~~i 469 (784)
T PRK10787 397 TYIGS-----MPGKLIQKMA-KVGV-KNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFV 469 (784)
T ss_pred ccCCC-----CCcHHHHHHH-hcCC-CCCEEEEEChhhcccccCCCHHHHHHHHhccccEEEEecccccccccCCceEEE
Confidence 01110 1111122222 1111 334788999853211 1111 112223455566
Q ss_pred EEeCCcchhccccCCccceecCCCCHHHHHHHHHHHh
Q 010355 280 MTARSQDVLSSKMDCQNNFLIGVLNESEARDLFKKLV 316 (512)
Q Consensus 280 vTtR~~~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~ 316 (512)
.|+....+.........++.+.+++.++-.++.++++
T Consensus 470 ~TaN~~~i~~aLl~R~~ii~~~~~t~eek~~Ia~~~L 506 (784)
T PRK10787 470 ATSNSMNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHL 506 (784)
T ss_pred EcCCCCCCCHHHhcceeeeecCCCCHHHHHHHHHHhh
Confidence 6765554433334555789999999999988887765
No 133
>PHA00729 NTP-binding motif containing protein
Probab=97.73 E-value=0.00025 Score=65.24 Aligned_cols=36 Identities=28% Similarity=0.375 Sum_probs=29.2
Q ss_pred HHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHhhh
Q 010355 160 DVINALKNPDVHMIGAYGMAGVGKTMLVKEVARQAK 195 (512)
Q Consensus 160 ~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 195 (512)
.++..+...+...|.|+|.+|+||||||..+++...
T Consensus 7 ~~~~~l~~~~f~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 7 KIVSAYNNNGFVSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred HHHHHHhcCCeEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 345555666677899999999999999999998753
No 134
>PRK10536 hypothetical protein; Provisional
Probab=97.71 E-value=0.00053 Score=64.16 Aligned_cols=55 Identities=25% Similarity=0.309 Sum_probs=41.1
Q ss_pred ccccccchHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEE
Q 010355 148 YEAFESRMSTLNDVINALKNPDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVV 204 (512)
Q Consensus 148 ~~~~~gR~~~l~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~ 204 (512)
..++.+|......++.++.+. ..+.+.|++|+|||+||..++...-....|..++
T Consensus 54 ~~~i~p~n~~Q~~~l~al~~~--~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIi 108 (262)
T PRK10536 54 TSPILARNEAQAHYLKAIESK--QLIFATGEAGCGKTWISAAKAAEALIHKDVDRII 108 (262)
T ss_pred CccccCCCHHHHHHHHHHhcC--CeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEE
Confidence 445678888888888888764 5999999999999999999888532223354443
No 135
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.70 E-value=0.00092 Score=73.77 Aligned_cols=171 Identities=16% Similarity=0.225 Sum_probs=94.1
Q ss_pred ccccccchHHHHHHHHHhc-------------CCCceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCCCH
Q 010355 148 YEAFESRMSTLNDVINALK-------------NPDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDV 214 (512)
Q Consensus 148 ~~~~~gR~~~l~~l~~~L~-------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~ 214 (512)
...+.|.+...+.|.+.+. -...+-+.++|++|+|||+||+.+++.... .| +.+...
T Consensus 452 ~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~--~f-----i~v~~~--- 521 (733)
T TIGR01243 452 WSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGA--NF-----IAVRGP--- 521 (733)
T ss_pred hhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCC--CE-----EEEehH---
Confidence 3445566665555544432 123456889999999999999999987652 22 222211
Q ss_pred HHHHHHHHHHhCCCCCCCCchHHHHHHHHHHhCCCeEEEEEeCCCChh--------------hhhhhCC---CC-CCCCe
Q 010355 215 KKIQGQIADKLGLKFYEESESGRARKLCERLKKEKKILVILDDIWTNL--------------DLENVGI---PF-GVRGC 276 (512)
Q Consensus 215 ~~ll~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~--------------~~~~l~~---~~-~~~gs 276 (512)
++ +... . ......+..++.......+++|+||++.... ....+.. .. ...+.
T Consensus 522 -~l----~~~~----v-Gese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v 591 (733)
T TIGR01243 522 -EI----LSKW----V-GESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNV 591 (733)
T ss_pred -HH----hhcc----c-CcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCE
Confidence 11 1110 0 1112234555555555678999999985321 0111111 01 13455
Q ss_pred EEEEEeCCcchhc-ccc---CCccceecCCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCCh
Q 010355 277 RVLMTARSQDVLS-SKM---DCQNNFLIGVLNESEARDLFKKLVGDKIENNDLKSLAMNIVKACRGLP 340 (512)
Q Consensus 277 ~iivTtR~~~v~~-~~~---~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~GlP 340 (512)
.||.||....... ... .-...+.+++.+.++-.++|+.+.......+.. -...|++.|.|.-
T Consensus 592 ~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~~~--~l~~la~~t~g~s 657 (733)
T TIGR01243 592 VVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAEDV--DLEELAEMTEGYT 657 (733)
T ss_pred EEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCCccC--CHHHHHHHcCCCC
Confidence 5666775544321 111 234678888889998899998766433222211 1356777787754
No 136
>PRK12608 transcription termination factor Rho; Provisional
Probab=97.70 E-value=0.00041 Score=68.48 Aligned_cols=101 Identities=14% Similarity=0.227 Sum_probs=66.7
Q ss_pred HHHHHHhcC-CCceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCe-EEEEEeCCC-CCHHHHHHHHHHHhCCCCCCCCch
Q 010355 159 NDVINALKN-PDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDE-VVYAEVSQR-PDVKKIQGQIADKLGLKFYEESES 235 (512)
Q Consensus 159 ~~l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~-~~wv~~~~~-~~~~~ll~~i~~~l~~~~~~~~~~ 235 (512)
.++++.+.. +.-.-+.|+|.+|+|||||++.+++..... +-+. ++|+.+.+. ..+.++++.+...+..........
T Consensus 121 ~RvID~l~PiGkGQR~LIvG~pGtGKTTLl~~la~~i~~~-~~dv~~vv~lIgER~~EV~df~~~i~~~Vvast~de~~~ 199 (380)
T PRK12608 121 MRVVDLVAPIGKGQRGLIVAPPRAGKTVLLQQIAAAVAAN-HPEVHLMVLLIDERPEEVTDMRRSVKGEVYASTFDRPPD 199 (380)
T ss_pred HhhhhheeecCCCceEEEECCCCCCHHHHHHHHHHHHHhc-CCCceEEEEEecCCCCCHHHHHHHHhhhEEeecCCCCHH
Confidence 446666662 233567999999999999999999877543 2333 467777654 477888888888776543222211
Q ss_pred H------HHHHHHHHH-hCCCeEEEEEeCCCC
Q 010355 236 G------RARKLCERL-KKEKKILVILDDIWT 260 (512)
Q Consensus 236 ~------~~~~l~~~l-~~~k~~LlVlDdv~~ 260 (512)
. ....+.+++ ..+++.+||+|++..
T Consensus 200 ~~~~v~~~~~~~Ae~f~~~GkdVVLvlDsltr 231 (380)
T PRK12608 200 EHIRVAELVLERAKRLVEQGKDVVILLDSLTR 231 (380)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCEEEEEeCcHH
Confidence 1 222333333 358999999999953
No 137
>PRK08939 primosomal protein DnaI; Reviewed
Probab=97.69 E-value=0.0028 Score=61.92 Aligned_cols=114 Identities=17% Similarity=0.194 Sum_probs=67.1
Q ss_pred cchHHHHHHHHHhcC----CCceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCC
Q 010355 153 SRMSTLNDVINALKN----PDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIADKLGLK 228 (512)
Q Consensus 153 gR~~~l~~l~~~L~~----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~i~~~l~~~ 228 (512)
+|...+.....++.. ...+-+.|+|..|+|||.||..+++....+ -..+.+++++ .++..+....+..
T Consensus 135 ~~~~~~~~~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~Aia~~l~~~--g~~v~~~~~~------~l~~~lk~~~~~~ 206 (306)
T PRK08939 135 DRLDALMAALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAAIANELAKK--GVSSTLLHFP------EFIRELKNSISDG 206 (306)
T ss_pred HHHHHHHHHHHHHHHhhccCCCCeEEEECCCCCCHHHHHHHHHHHHHHc--CCCEEEEEHH------HHHHHHHHHHhcC
Confidence 455555555555542 234679999999999999999999988632 2345566543 4555555444211
Q ss_pred CCCCCchHHHHHHHHHHhCCCeEEEEEeCCCC--hhhhhh--hCCCC-C---CCCeEEEEEeCC
Q 010355 229 FYEESESGRARKLCERLKKEKKILVILDDIWT--NLDLEN--VGIPF-G---VRGCRVLMTARS 284 (512)
Q Consensus 229 ~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~--~~~~~~--l~~~~-~---~~gs~iivTtR~ 284 (512)
......+.+. +.=||||||+.. ...|.. +..+. . ..+..+|+||..
T Consensus 207 --------~~~~~l~~l~--~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSNl 260 (306)
T PRK08939 207 --------SVKEKIDAVK--EAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSNF 260 (306)
T ss_pred --------cHHHHHHHhc--CCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECCC
Confidence 1233444554 467999999953 233432 21111 1 244567777764
No 138
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.69 E-value=0.00065 Score=62.51 Aligned_cols=170 Identities=17% Similarity=0.275 Sum_probs=98.6
Q ss_pred ccccccchHHHHH---HHHHhcCC------CceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCCCHHHHH
Q 010355 148 YEAFESRMSTLND---VINALKNP------DVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQ 218 (512)
Q Consensus 148 ~~~~~gR~~~l~~---l~~~L~~~------~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ll 218 (512)
...++|.+....+ |+..|.++ .++-|..+|++|.|||.+|+++++...+- | +.+.. .++
T Consensus 120 ~ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~kvp--~-----l~vka----t~l- 187 (368)
T COG1223 120 LDDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAKVP--L-----LLVKA----TEL- 187 (368)
T ss_pred HhhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccCCc--e-----EEech----HHH-
Confidence 3456777665443 56666643 46889999999999999999999887642 2 22211 111
Q ss_pred HHHHHHhCCCCCCCCchHHHHHHHHHHhCCCeEEEEEeCCCCh--------------hhhhhhCCCC----CCCCeEEEE
Q 010355 219 GQIADKLGLKFYEESESGRARKLCERLKKEKKILVILDDIWTN--------------LDLENVGIPF----GVRGCRVLM 280 (512)
Q Consensus 219 ~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~--------------~~~~~l~~~~----~~~gs~iiv 280 (512)
|-..+| .....+..+.++...--+|+++||.++.. +..+.+..-+ .+.|...|.
T Consensus 188 --iGehVG------dgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvtIa 259 (368)
T COG1223 188 --IGEHVG------DGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVTIA 259 (368)
T ss_pred --HHHHhh------hHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEEEe
Confidence 111121 23345667777776668999999988532 1122221111 156666666
Q ss_pred EeCCcchhccccC--CccceecCCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCC
Q 010355 281 TARSQDVLSSKMD--CQNNFLIGVLNESEARDLFKKLVGDKIENNDLKSLAMNIVKACRGL 339 (512)
Q Consensus 281 TtR~~~v~~~~~~--~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~Gl 339 (512)
.|.+...+..... -...|+...-+.++-..++..++..-..+- ..-.+.++++.+|+
T Consensus 260 aTN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~Plpv--~~~~~~~~~~t~g~ 318 (368)
T COG1223 260 ATNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKKFPLPV--DADLRYLAAKTKGM 318 (368)
T ss_pred ecCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHHHhCCCcc--ccCHHHHHHHhCCC
Confidence 6666554421111 123566666678888888888774221111 11245666777775
No 139
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.68 E-value=0.0012 Score=65.97 Aligned_cols=180 Identities=17% Similarity=0.163 Sum_probs=102.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHhCC
Q 010355 169 DVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIADKLGLKFYEESESGRARKLCERLKKE 248 (512)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 248 (512)
....+.|||..|.|||.|++++++.......-..+++++ .......++..+.. ......++.. +
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~------se~f~~~~v~a~~~--------~~~~~Fk~~y-~- 175 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLT------SEDFTNDFVKALRD--------NEMEKFKEKY-S- 175 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEecc------HHHHHHHHHHHHHh--------hhHHHHHHhh-c-
Confidence 367899999999999999999999887432222455542 33444444433321 1233334333 2
Q ss_pred CeEEEEEeCCCChh---hhhh-hC---CCCCCCCeEEEEEeCCcchh--------ccccCCccceecCCCCHHHHHHHHH
Q 010355 249 KKILVILDDIWTNL---DLEN-VG---IPFGVRGCRVLMTARSQDVL--------SSKMDCQNNFLIGVLNESEARDLFK 313 (512)
Q Consensus 249 k~~LlVlDdv~~~~---~~~~-l~---~~~~~~gs~iivTtR~~~v~--------~~~~~~~~~~~l~~L~~~ea~~Lf~ 313 (512)
-=++++||++-.. .++. +. ..+...|-.||+|++..+-. ...+....++.+.|.+.+....++.
T Consensus 176 -~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL~ 254 (408)
T COG0593 176 -LDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLAILR 254 (408)
T ss_pred -cCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHHHHH
Confidence 2388999996431 1111 11 11224455899998754321 1123445789999999999999999
Q ss_pred HHhCCC--CCCchhHHHHHHHHHHcCCC----hhHHHHHHHHhc--cC--CHHHHHHHHHHhcCC
Q 010355 314 KLVGDK--IENNDLKSLAMNIVKACRGL----PIAIVTIARALR--NK--NTFEWKSALRELTRP 368 (512)
Q Consensus 314 ~~~~~~--~~~~~~~~~~~~I~~~~~Gl----PLai~~ia~~L~--~~--~~~~w~~~l~~l~~~ 368 (512)
+.+... ..++ ++..-|++..... .=|+..+..+-. ++ +...-+.+|+.+...
T Consensus 255 kka~~~~~~i~~---ev~~~la~~~~~nvReLegaL~~l~~~a~~~~~~iTi~~v~e~L~~~~~~ 316 (408)
T COG0593 255 KKAEDRGIEIPD---EVLEFLAKRLDRNVRELEGALNRLDAFALFTKRAITIDLVKEILKDLLRA 316 (408)
T ss_pred HHHHhcCCCCCH---HHHHHHHHHhhccHHHHHHHHHHHHHHHHhcCccCcHHHHHHHHHHhhcc
Confidence 876422 2222 3444444444333 334433333322 22 677777777775543
No 140
>PRK12377 putative replication protein; Provisional
Probab=97.67 E-value=0.00016 Score=68.18 Aligned_cols=74 Identities=20% Similarity=0.249 Sum_probs=48.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHhCC
Q 010355 169 DVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIADKLGLKFYEESESGRARKLCERLKKE 248 (512)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 248 (512)
+...+.|+|.+|+|||+||..+++..... ...++++++. +++..|-...... .....+.+.+.
T Consensus 100 ~~~~l~l~G~~GtGKThLa~AIa~~l~~~--g~~v~~i~~~------~l~~~l~~~~~~~-------~~~~~~l~~l~-- 162 (248)
T PRK12377 100 GCTNFVFSGKPGTGKNHLAAAIGNRLLAK--GRSVIVVTVP------DVMSRLHESYDNG-------QSGEKFLQELC-- 162 (248)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHHHHHc--CCCeEEEEHH------HHHHHHHHHHhcc-------chHHHHHHHhc--
Confidence 34678999999999999999999988643 3445666543 4555554333110 11223455553
Q ss_pred CeEEEEEeCCC
Q 010355 249 KKILVILDDIW 259 (512)
Q Consensus 249 k~~LlVlDdv~ 259 (512)
+.-||||||+.
T Consensus 163 ~~dLLiIDDlg 173 (248)
T PRK12377 163 KVDLLVLDEIG 173 (248)
T ss_pred CCCEEEEcCCC
Confidence 46799999993
No 141
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=97.67 E-value=0.0055 Score=59.95 Aligned_cols=159 Identities=12% Similarity=0.109 Sum_probs=93.8
Q ss_pred HHHHHHHhcCCC-ceEEEEEcCCCCcHHHHHHHHHHhhhhcC-------------------CCCeEEEEEeCCCCCHHHH
Q 010355 158 LNDVINALKNPD-VHMIGAYGMAGVGKTMLVKEVARQAKADK-------------------LFDEVVYAEVSQRPDVKKI 217 (512)
Q Consensus 158 l~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-------------------~f~~~~wv~~~~~~~~~~l 217 (512)
.++|...+..++ .+.+.++|+.|+||+++|..++...--.+ |.| ..|+.-...
T Consensus 12 ~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD-~~~i~p~~~------ 84 (319)
T PRK06090 12 WQNWKAGLDAGRIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPD-LHVIKPEKE------ 84 (319)
T ss_pred HHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCC-EEEEecCcC------
Confidence 455666665444 46889999999999999999987653111 111 122211100
Q ss_pred HHHHHHHhCCCCCCCCchHHHHHHHHHHh----CCCeEEEEEeCCCCh--hhhhh----hCCCCCCCCeEEEEEeCCc-c
Q 010355 218 QGQIADKLGLKFYEESESGRARKLCERLK----KEKKILVILDDIWTN--LDLEN----VGIPFGVRGCRVLMTARSQ-D 286 (512)
Q Consensus 218 l~~i~~~l~~~~~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~--~~~~~----l~~~~~~~gs~iivTtR~~-~ 286 (512)
...-..+.+..+.+.+. .+++-++|++++... ...+. +--| .+++.+|++|.+. .
T Consensus 85 ------------~~~I~vdqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEP--p~~t~fiL~t~~~~~ 150 (319)
T PRK06090 85 ------------GKSITVEQIRQCNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEEP--APNCLFLLVTHNQKR 150 (319)
T ss_pred ------------CCcCCHHHHHHHHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhcCC--CCCeEEEEEECChhh
Confidence 00011122333333332 245668899998744 23333 3233 4566666666654 4
Q ss_pred hhccccCCccceecCCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChhHHHHH
Q 010355 287 VLSSKMDCQNNFLIGVLNESEARDLFKKLVGDKIENNDLKSLAMNIVKACRGLPIAIVTI 346 (512)
Q Consensus 287 v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~GlPLai~~i 346 (512)
+.....+....+.+.+++.+++.+.+..... . ....+++.++|.|+.+..+
T Consensus 151 lLpTI~SRCq~~~~~~~~~~~~~~~L~~~~~-----~----~~~~~l~l~~G~p~~A~~~ 201 (319)
T PRK06090 151 LLPTIVSRCQQWVVTPPSTAQAMQWLKGQGI-----T----VPAYALKLNMGSPLKTLAM 201 (319)
T ss_pred ChHHHHhcceeEeCCCCCHHHHHHHHHHcCC-----c----hHHHHHHHcCCCHHHHHHH
Confidence 4444455567899999999999998876421 1 1346789999999977554
No 142
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=97.67 E-value=0.0016 Score=64.55 Aligned_cols=142 Identities=13% Similarity=0.108 Sum_probs=83.9
Q ss_pred cccc-chHHHHHHHHHhcCCCc-eEEEEEcCCCCcHHHHHHHHHHhhhhcC--------------------CCCeEEEEE
Q 010355 150 AFES-RMSTLNDVINALKNPDV-HMIGAYGMAGVGKTMLVKEVARQAKADK--------------------LFDEVVYAE 207 (512)
Q Consensus 150 ~~~g-R~~~l~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~--------------------~f~~~~wv~ 207 (512)
.++| .+..++.|...+..++. +...++|+.|+|||++|..+++..--.. |.+. .++.
T Consensus 6 ~i~~~q~~~~~~L~~~~~~~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~~hpD~-~~i~ 84 (329)
T PRK08058 6 QLTALQPVVVKMLQNSIAKNRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPDV-HLVA 84 (329)
T ss_pred HHHhhHHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcCCCCCE-EEec
Confidence 3455 66677777777776554 5669999999999999999988753211 1111 1111
Q ss_pred e-CCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHh----CCCeEEEEEeCCCCh--hhhhh----hCCCCCCCCe
Q 010355 208 V-SQRPDVKKIQGQIADKLGLKFYEESESGRARKLCERLK----KEKKILVILDDIWTN--LDLEN----VGIPFGVRGC 276 (512)
Q Consensus 208 ~-~~~~~~~~ll~~i~~~l~~~~~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~--~~~~~----l~~~~~~~gs 276 (512)
. +.... .+.+..+.+.+. .+++-++|+|++... ...+. +--| ..++
T Consensus 85 ~~~~~i~---------------------id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEP--p~~~ 141 (329)
T PRK08058 85 PDGQSIK---------------------KDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEP--SGGT 141 (329)
T ss_pred cccccCC---------------------HHHHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCC--CCCc
Confidence 1 11111 122333333332 235567899998643 22222 2222 4567
Q ss_pred EEEEEeCCcc-hhccccCCccceecCCCCHHHHHHHHHHH
Q 010355 277 RVLMTARSQD-VLSSKMDCQNNFLIGVLNESEARDLFKKL 315 (512)
Q Consensus 277 ~iivTtR~~~-v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~ 315 (512)
.+|++|.+.. +..........+++.+++.++....+.+.
T Consensus 142 ~~Il~t~~~~~ll~TIrSRc~~i~~~~~~~~~~~~~L~~~ 181 (329)
T PRK08058 142 TAILLTENKHQILPTILSRCQVVEFRPLPPESLIQRLQEE 181 (329)
T ss_pred eEEEEeCChHhCcHHHHhhceeeeCCCCCHHHHHHHHHHc
Confidence 7777776543 32333455678999999999998888754
No 143
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=97.65 E-value=0.0021 Score=67.28 Aligned_cols=153 Identities=19% Similarity=0.266 Sum_probs=86.6
Q ss_pred ccccccchHHHHHHHHHhc------CCCceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCCCHHHHHHHH
Q 010355 148 YEAFESRMSTLNDVINALK------NPDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQI 221 (512)
Q Consensus 148 ~~~~~gR~~~l~~l~~~L~------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~i 221 (512)
....+|-.+..++|++++. +.+-++++++|++|+|||++|+.++.....+ | +-++++.-.+..++-..=
T Consensus 410 deDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRk--F---fRfSvGG~tDvAeIkGHR 484 (906)
T KOG2004|consen 410 DEDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARALNRK--F---FRFSVGGMTDVAEIKGHR 484 (906)
T ss_pred cccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHhCCc--e---EEEeccccccHHhhcccc
Confidence 3456788888899988875 3456899999999999999999999987632 3 234555555444332100
Q ss_pred HHHhCCCCCCCCchHHHHHHHHHHhC--CCeEEEEEeCCCCh---------hhhhhh--------------CCCCCCCCe
Q 010355 222 ADKLGLKFYEESESGRARKLCERLKK--EKKILVILDDIWTN---------LDLENV--------------GIPFGVRGC 276 (512)
Q Consensus 222 ~~~l~~~~~~~~~~~~~~~l~~~l~~--~k~~LlVlDdv~~~---------~~~~~l--------------~~~~~~~gs 276 (512)
-..+ ..... ++.+.|+. -.+-|+.||.|+.. ..+-.+ -.|+. =|
T Consensus 485 RTYV------GAMPG---kiIq~LK~v~t~NPliLiDEvDKlG~g~qGDPasALLElLDPEQNanFlDHYLdVp~D--LS 553 (906)
T KOG2004|consen 485 RTYV------GAMPG---KIIQCLKKVKTENPLILIDEVDKLGSGHQGDPASALLELLDPEQNANFLDHYLDVPVD--LS 553 (906)
T ss_pred eeee------ccCCh---HHHHHHHhhCCCCceEEeehhhhhCCCCCCChHHHHHHhcChhhccchhhhccccccc--hh
Confidence 0000 11111 23333321 23568888888532 111111 11211 24
Q ss_pred EEEEEeCCcch---hccccCCccceecCCCCHHHHHHHHHHHh
Q 010355 277 RVLMTARSQDV---LSSKMDCQNNFLIGVLNESEARDLFKKLV 316 (512)
Q Consensus 277 ~iivTtR~~~v---~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~ 316 (512)
+|++.+.-..+ .......-.+|.|.+-..+|-..+-.+++
T Consensus 554 kVLFicTAN~idtIP~pLlDRMEvIelsGYv~eEKv~IA~~yL 596 (906)
T KOG2004|consen 554 KVLFICTANVIDTIPPPLLDRMEVIELSGYVAEEKVKIAERYL 596 (906)
T ss_pred heEEEEeccccccCChhhhhhhheeeccCccHHHHHHHHHHhh
Confidence 55543322211 12223455688898888888777776655
No 144
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.65 E-value=0.00053 Score=76.20 Aligned_cols=105 Identities=16% Similarity=0.190 Sum_probs=59.2
Q ss_pred cccccchHHHHHHHHHhc-------C--CCceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCCCHHHHHH
Q 010355 149 EAFESRMSTLNDVINALK-------N--PDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQG 219 (512)
Q Consensus 149 ~~~~gR~~~l~~l~~~L~-------~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ll~ 219 (512)
..++|.+..+..+...+. . ....++.++|++|+|||.||+.++...-.. ....+-++++..... .
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~--~~~~~~~dmse~~~~----~ 639 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYGG--EQNLITINMSEFQEA----H 639 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhCC--CcceEEEeHHHhhhh----h
Confidence 456788888888887764 1 123578999999999999999998876321 222333333321111 1
Q ss_pred HHHHHhCCCCCCCCchHHHHHHHHHHhCCCeEEEEEeCCCC
Q 010355 220 QIADKLGLKFYEESESGRARKLCERLKKEKKILVILDDIWT 260 (512)
Q Consensus 220 ~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~ 260 (512)
.+.+-+|.++.-... .....+.+.+++....+|+||++..
T Consensus 640 ~~~~l~g~~~gyvg~-~~~g~L~~~v~~~p~svvllDEiek 679 (852)
T TIGR03345 640 TVSRLKGSPPGYVGY-GEGGVLTEAVRRKPYSVVLLDEVEK 679 (852)
T ss_pred hhccccCCCCCcccc-cccchHHHHHHhCCCcEEEEechhh
Confidence 111112222111110 1112344555555678999999963
No 145
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=97.65 E-value=0.0016 Score=62.31 Aligned_cols=55 Identities=24% Similarity=0.257 Sum_probs=35.9
Q ss_pred HHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCCCHHHHH
Q 010355 157 TLNDVINALKNPDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQ 218 (512)
Q Consensus 157 ~l~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ll 218 (512)
.++++..++..+ +.|.|.|++|+|||+||+.++.... ...+++++.......+++
T Consensus 10 l~~~~l~~l~~g--~~vLL~G~~GtGKT~lA~~la~~lg-----~~~~~i~~~~~~~~~dll 64 (262)
T TIGR02640 10 VTSRALRYLKSG--YPVHLRGPAGTGKTTLAMHVARKRD-----RPVMLINGDAELTTSDLV 64 (262)
T ss_pred HHHHHHHHHhcC--CeEEEEcCCCCCHHHHHHHHHHHhC-----CCEEEEeCCccCCHHHHh
Confidence 345555555543 4567999999999999999987442 123455555555544443
No 146
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=97.64 E-value=0.00021 Score=74.64 Aligned_cols=155 Identities=19% Similarity=0.240 Sum_probs=89.6
Q ss_pred cccccchHHHHHHHHHhc------CCCceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCCCHHHHHHHHH
Q 010355 149 EAFESRMSTLNDVINALK------NPDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIA 222 (512)
Q Consensus 149 ~~~~gR~~~l~~l~~~L~------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~i~ 222 (512)
...+|-++..++|++.|. .-.-++++++|++|+|||+|++.++.....+ | +-++++.-.+..++-..=-
T Consensus 323 ~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al~Rk--f---vR~sLGGvrDEAEIRGHRR 397 (782)
T COG0466 323 KDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKALGRK--F---VRISLGGVRDEAEIRGHRR 397 (782)
T ss_pred ccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHhCCC--E---EEEecCccccHHHhccccc
Confidence 456788899999998886 2345899999999999999999999988733 4 2344554444333211000
Q ss_pred HHhCCCCCCCCchH-HHHHHHHHHhCCCeEEEEEeCCCCh---------hhhhh--------------hCCCCCCCCeEE
Q 010355 223 DKLGLKFYEESESG-RARKLCERLKKEKKILVILDDIWTN---------LDLEN--------------VGIPFGVRGCRV 278 (512)
Q Consensus 223 ~~l~~~~~~~~~~~-~~~~l~~~l~~~k~~LlVlDdv~~~---------~~~~~--------------l~~~~~~~gs~i 278 (512)
..+ .+... .++.+.+ .. .++=|++||.++.. ..+-. +-.++.-....+
T Consensus 398 TYI------GamPGrIiQ~mkk-a~-~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~VmF 469 (782)
T COG0466 398 TYI------GAMPGKIIQGMKK-AG-VKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKVMF 469 (782)
T ss_pred ccc------ccCChHHHHHHHH-hC-CcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchhheEE
Confidence 000 01111 1222222 22 36678999988532 11111 112222223334
Q ss_pred EEEeCCcc-hhccccCCccceecCCCCHHHHHHHHHHHh
Q 010355 279 LMTARSQD-VLSSKMDCQNNFLIGVLNESEARDLFKKLV 316 (512)
Q Consensus 279 ivTtR~~~-v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~ 316 (512)
|.|+.+-. +....+..-.+|++.+-+.+|-.++-++++
T Consensus 470 iaTANsl~tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~L 508 (782)
T COG0466 470 IATANSLDTIPAPLLDRMEVIRLSGYTEDEKLEIAKRHL 508 (782)
T ss_pred EeecCccccCChHHhcceeeeeecCCChHHHHHHHHHhc
Confidence 44444433 323335566799999999999888877765
No 147
>CHL00195 ycf46 Ycf46; Provisional
Probab=97.62 E-value=0.00078 Score=69.83 Aligned_cols=151 Identities=17% Similarity=0.191 Sum_probs=80.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHhCC
Q 010355 169 DVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIADKLGLKFYEESESGRARKLCERLKKE 248 (512)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 248 (512)
..+-|.++|++|+|||.+|+.+++..... | +-++.+. ++.. .+| .....+..++......
T Consensus 258 ~pkGILL~GPpGTGKTllAkaiA~e~~~~--~---~~l~~~~------l~~~---~vG------ese~~l~~~f~~A~~~ 317 (489)
T CHL00195 258 TPRGLLLVGIQGTGKSLTAKAIANDWQLP--L---LRLDVGK------LFGG---IVG------ESESRMRQMIRIAEAL 317 (489)
T ss_pred CCceEEEECCCCCcHHHHHHHHHHHhCCC--E---EEEEhHH------hccc---ccC------hHHHHHHHHHHHHHhc
Confidence 35678999999999999999999876531 2 2222211 1100 001 1112333444444445
Q ss_pred CeEEEEEeCCCChhh--------------hhhhCCCC--CCCCeEEEEEeCCcchhc----cccCCccceecCCCCHHHH
Q 010355 249 KKILVILDDIWTNLD--------------LENVGIPF--GVRGCRVLMTARSQDVLS----SKMDCQNNFLIGVLNESEA 308 (512)
Q Consensus 249 k~~LlVlDdv~~~~~--------------~~~l~~~~--~~~gs~iivTtR~~~v~~----~~~~~~~~~~l~~L~~~ea 308 (512)
.+++|+||+++.... +..+...+ ...+..||.||....... +...-...+.++.-+.++-
T Consensus 318 ~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIaTTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR 397 (489)
T CHL00195 318 SPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVVATANNIDLLPLEILRKGRFDEIFFLDLPSLEER 397 (489)
T ss_pred CCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEEEecCChhhCCHHHhCCCcCCeEEEeCCcCHHHH
Confidence 789999999863210 00110000 123445666776543221 1112235678888888999
Q ss_pred HHHHHHHhCCCCCCchhHHHHHHHHHHcCCC
Q 010355 309 RDLFKKLVGDKIENNDLKSLAMNIVKACRGL 339 (512)
Q Consensus 309 ~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~Gl 339 (512)
.++|..++...............+++.+.|.
T Consensus 398 ~~Il~~~l~~~~~~~~~~~dl~~La~~T~Gf 428 (489)
T CHL00195 398 EKIFKIHLQKFRPKSWKKYDIKKLSKLSNKF 428 (489)
T ss_pred HHHHHHHHhhcCCCcccccCHHHHHhhcCCC
Confidence 9999887753221110011245666776665
No 148
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.59 E-value=0.00046 Score=60.60 Aligned_cols=39 Identities=28% Similarity=0.426 Sum_probs=30.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCC
Q 010355 172 MIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRP 212 (512)
Q Consensus 172 vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~ 212 (512)
++.|+|.+|+||||++..++..... .-..++|++.....
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~--~~~~v~~~~~e~~~ 39 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIAT--KGGKVVYVDIEEEI 39 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHh--cCCEEEEEECCcch
Confidence 3689999999999999999988753 34567788776554
No 149
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.57 E-value=0.012 Score=58.79 Aligned_cols=151 Identities=17% Similarity=0.205 Sum_probs=84.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHhCCCe
Q 010355 171 HMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIADKLGLKFYEESESGRARKLCERLKKEKK 250 (512)
Q Consensus 171 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~ 250 (512)
|--.++||+|.|||+++.++++... |+..- +.++....-.+ ++.++.. ...+
T Consensus 236 RGYLLYGPPGTGKSS~IaAmAn~L~----ydIyd-LeLt~v~~n~d-Lr~LL~~----------------------t~~k 287 (457)
T KOG0743|consen 236 RGYLLYGPPGTGKSSFIAAMANYLN----YDIYD-LELTEVKLDSD-LRHLLLA----------------------TPNK 287 (457)
T ss_pred ccceeeCCCCCCHHHHHHHHHhhcC----CceEE-eeeccccCcHH-HHHHHHh----------------------CCCC
Confidence 5678999999999999999998875 54321 22222221112 2222211 1346
Q ss_pred EEEEEeCCCChhhhh--------------------hhCC----CCCCC-CeE-EEEEeCCcchh----ccccCCccceec
Q 010355 251 ILVILDDIWTNLDLE--------------------NVGI----PFGVR-GCR-VLMTARSQDVL----SSKMDCQNNFLI 300 (512)
Q Consensus 251 ~LlVlDdv~~~~~~~--------------------~l~~----~~~~~-gs~-iivTtR~~~v~----~~~~~~~~~~~l 300 (512)
-+|||.|++...++. -|.. ....+ +=| ||+||....-+ .+...-...+.|
T Consensus 288 SIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~EkLDPALlRpGRmDmhI~m 367 (457)
T KOG0743|consen 288 SILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDMHIYM 367 (457)
T ss_pred cEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCChhhcCHhhcCCCcceeEEEc
Confidence 777888875431110 0100 00122 224 55566654432 111122357889
Q ss_pred CCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChhHHHHHHHHh-ccC
Q 010355 301 GVLNESEARDLFKKLVGDKIENNDLKSLAMNIVKACRGLPIAIVTIARAL-RNK 353 (512)
Q Consensus 301 ~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~GlPLai~~ia~~L-~~~ 353 (512)
.--+......||.++++....+ .++.+|.+...|.-+.=..++..| .++
T Consensus 368 gyCtf~~fK~La~nYL~~~~~h----~L~~eie~l~~~~~~tPA~V~e~lm~~~ 417 (457)
T KOG0743|consen 368 GYCTFEAFKTLASNYLGIEEDH----RLFDEIERLIEETEVTPAQVAEELMKNK 417 (457)
T ss_pred CCCCHHHHHHHHHHhcCCCCCc----chhHHHHHHhhcCccCHHHHHHHHhhcc
Confidence 9999999999999999754322 345566666666655555555554 344
No 150
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.57 E-value=0.00068 Score=63.07 Aligned_cols=36 Identities=25% Similarity=0.369 Sum_probs=29.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEe
Q 010355 171 HMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEV 208 (512)
Q Consensus 171 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~ 208 (512)
-.++|.|.+|+|||||+..+..... ..|..+++++-
T Consensus 14 fr~viIG~sGSGKT~li~~lL~~~~--~~f~~I~l~t~ 49 (241)
T PF04665_consen 14 FRMVIIGKSGSGKTTLIKSLLYYLR--HKFDHIFLITP 49 (241)
T ss_pred ceEEEECCCCCCHHHHHHHHHHhhc--ccCCEEEEEec
Confidence 3578999999999999999998776 56887777654
No 151
>PRK06921 hypothetical protein; Provisional
Probab=97.56 E-value=0.00031 Score=67.26 Aligned_cols=71 Identities=24% Similarity=0.300 Sum_probs=45.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHhCC
Q 010355 169 DVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIADKLGLKFYEESESGRARKLCERLKKE 248 (512)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 248 (512)
....+.++|.+|+|||+||..+++....+ ....++|++. .+++..+...+ .......+.+.
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~~~-~g~~v~y~~~------~~l~~~l~~~~----------~~~~~~~~~~~-- 176 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELMRK-KGVPVLYFPF------VEGFGDLKDDF----------DLLEAKLNRMK-- 176 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhhh-cCceEEEEEH------HHHHHHHHHHH----------HHHHHHHHHhc--
Confidence 45789999999999999999999987532 1345666654 23333332221 11222334443
Q ss_pred CeEEEEEeCC
Q 010355 249 KKILVILDDI 258 (512)
Q Consensus 249 k~~LlVlDdv 258 (512)
+-=||||||+
T Consensus 177 ~~dlLiIDDl 186 (266)
T PRK06921 177 KVEVLFIDDL 186 (266)
T ss_pred CCCEEEEecc
Confidence 3569999999
No 152
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=97.56 E-value=0.0039 Score=61.20 Aligned_cols=29 Identities=21% Similarity=0.326 Sum_probs=25.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHhhhh
Q 010355 168 PDVHMIGAYGMAGVGKTMLVKEVARQAKA 196 (512)
Q Consensus 168 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 196 (512)
..+..++|||++|+|||.+|+.++.....
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~elg~ 174 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKKMGI 174 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHHcCC
Confidence 45688999999999999999999998764
No 153
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=97.55 E-value=0.00071 Score=69.74 Aligned_cols=189 Identities=13% Similarity=0.142 Sum_probs=111.3
Q ss_pred ccCccccccchHHHHHHHHHhcCCC-ceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCCCHHHHHHHHHH
Q 010355 145 IKGYEAFESRMSTLNDVINALKNPD-VHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIAD 223 (512)
Q Consensus 145 ~~~~~~~~gR~~~l~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~i~~ 223 (512)
|.....++|.+.....|...+..++ .+...+.|+-|+||||+|+-++...--.+ | ....++..-..-+.|..
T Consensus 12 P~~F~evvGQe~v~~~L~nal~~~ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~------~-~~~ePC~~C~~Ck~I~~ 84 (515)
T COG2812 12 PKTFDDVVGQEHVVKTLSNALENGRIAHAYLFSGPRGVGKTTIARILAKALNCEN------G-PTAEPCGKCISCKEINE 84 (515)
T ss_pred cccHHHhcccHHHHHHHHHHHHhCcchhhhhhcCCCCcCchhHHHHHHHHhcCCC------C-CCCCcchhhhhhHhhhc
Confidence 3445677999999999999888554 46778899999999999999988653211 0 11112222222222221
Q ss_pred HhCCC-----CCCCCchHHHHHHHHHHh----CCCeEEEEEeCCCCh--hhhhhhCCCCC--CCCeEEEEEeCCc-chhc
Q 010355 224 KLGLK-----FYEESESGRARKLCERLK----KEKKILVILDDIWTN--LDLENVGIPFG--VRGCRVLMTARSQ-DVLS 289 (512)
Q Consensus 224 ~l~~~-----~~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~--~~~~~l~~~~~--~~gs~iivTtR~~-~v~~ 289 (512)
.-... .-.....+.+..+.+... .+|.-+.|+|.|... ..|+.+.-.+- ..+..+|+.|+.. .+..
T Consensus 85 g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~Kip~ 164 (515)
T COG2812 85 GSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQKIPN 164 (515)
T ss_pred CCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCcCcCch
Confidence 10000 001122334455555543 356669999999754 45665532222 4456666655544 4444
Q ss_pred cccCCccceecCCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChh
Q 010355 290 SKMDCQNNFLIGVLNESEARDLFKKLVGDKIENNDLKSLAMNIVKACRGLPI 341 (512)
Q Consensus 290 ~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~GlPL 341 (512)
...+....|.++.|+.++-...+...+......- .......|.+...|...
T Consensus 165 TIlSRcq~f~fkri~~~~I~~~L~~i~~~E~I~~-e~~aL~~ia~~a~Gs~R 215 (515)
T COG2812 165 TILSRCQRFDFKRLDLEEIAKHLAAILDKEGINI-EEDALSLIARAAEGSLR 215 (515)
T ss_pred hhhhccccccccCCCHHHHHHHHHHHHHhcCCcc-CHHHHHHHHHHcCCChh
Confidence 4456678999999999999888888775332211 13445566666666443
No 154
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.53 E-value=0.0012 Score=72.82 Aligned_cols=171 Identities=18% Similarity=0.236 Sum_probs=91.6
Q ss_pred ccccccchHHHHHHHHHhc-------------CCCceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCCCH
Q 010355 148 YEAFESRMSTLNDVINALK-------------NPDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDV 214 (512)
Q Consensus 148 ~~~~~gR~~~l~~l~~~L~-------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~ 214 (512)
...+.|.+..++.|.+++. -...+.+.|+|++|+|||+||+.+++.... .| +.++.+
T Consensus 177 ~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~--~~---i~i~~~----- 246 (733)
T TIGR01243 177 YEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGA--YF---ISINGP----- 246 (733)
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCC--eE---EEEecH-----
Confidence 4457788888888776653 123467889999999999999999987642 12 223221
Q ss_pred HHHHHHHHHHhCCCCCCCCchHHHHHHHHHHhCCCeEEEEEeCCCChh-------------hhhhhC---CCCCCCCeEE
Q 010355 215 KKIQGQIADKLGLKFYEESESGRARKLCERLKKEKKILVILDDIWTNL-------------DLENVG---IPFGVRGCRV 278 (512)
Q Consensus 215 ~~ll~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~-------------~~~~l~---~~~~~~gs~i 278 (512)
.+.. .. .......+..+++......+.+|+||++.... ....+. -.+...+..+
T Consensus 247 -~i~~----~~-----~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~vi 316 (733)
T TIGR01243 247 -EIMS----KY-----YGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRVI 316 (733)
T ss_pred -HHhc----cc-----ccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCCEE
Confidence 1110 00 00112233444444444567899999985321 011111 1111233334
Q ss_pred EE-EeCCcchh-c---cccCCccceecCCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCCh
Q 010355 279 LM-TARSQDVL-S---SKMDCQNNFLIGVLNESEARDLFKKLVGDKIENNDLKSLAMNIVKACRGLP 340 (512)
Q Consensus 279 iv-TtR~~~v~-~---~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~GlP 340 (512)
+| ||...... . ....-...+.+...+.++-.+++............ .....+++.+.|..
T Consensus 317 vI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~~d--~~l~~la~~t~G~~ 381 (733)
T TIGR01243 317 VIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLAED--VDLDKLAEVTHGFV 381 (733)
T ss_pred EEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCccc--cCHHHHHHhCCCCC
Confidence 44 44433211 1 00011246778888888888888866543222111 12456777777764
No 155
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.53 E-value=0.0051 Score=64.00 Aligned_cols=132 Identities=14% Similarity=0.248 Sum_probs=74.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHhC
Q 010355 168 PDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIADKLGLKFYEESESGRARKLCERLKK 247 (512)
Q Consensus 168 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~i~~~l~~~~~~~~~~~~~~~l~~~l~~ 247 (512)
...+-|.++|++|+|||++|+.+++..... | ++++.. +++... . ......+..++..-++
T Consensus 466 ~ppkGVLlyGPPGC~KT~lAkalAne~~~n--F-----lsvkgp----EL~sk~---v------GeSEr~ir~iF~kAR~ 525 (693)
T KOG0730|consen 466 SPPKGVLLYGPPGCGKTLLAKALANEAGMN--F-----LSVKGP----ELFSKY---V------GESERAIREVFRKARQ 525 (693)
T ss_pred CCCceEEEECCCCcchHHHHHHHhhhhcCC--e-----eeccCH----HHHHHh---c------CchHHHHHHHHHHHhh
Confidence 457889999999999999999999987643 3 443322 111111 1 1122234455555555
Q ss_pred CCeEEEEEeCCCChh-------------hhhhhCCCCC----CCCeEEEEEeCCcchh-ccccC---CccceecCCCCHH
Q 010355 248 EKKILVILDDIWTNL-------------DLENVGIPFG----VRGCRVLMTARSQDVL-SSKMD---CQNNFLIGVLNES 306 (512)
Q Consensus 248 ~k~~LlVlDdv~~~~-------------~~~~l~~~~~----~~gs~iivTtR~~~v~-~~~~~---~~~~~~l~~L~~~ 306 (512)
--+++|.||.++... .+..+..-.. ..+.-||-.|..+... ...+. -...+.+++-+.+
T Consensus 526 ~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~V~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~ 605 (693)
T KOG0730|consen 526 VAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKNVLVIAATNRPDMIDPALLRPGRLDRIIYVPLPDLE 605 (693)
T ss_pred cCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccCcEEEEeccCChhhcCHHHcCCcccceeEeecCccHH
Confidence 567999999886431 1222211111 2233344333333222 11222 3467778777778
Q ss_pred HHHHHHHHHhCCC
Q 010355 307 EARDLFKKLVGDK 319 (512)
Q Consensus 307 ea~~Lf~~~~~~~ 319 (512)
.-.++|+.++..-
T Consensus 606 aR~~Ilk~~~kkm 618 (693)
T KOG0730|consen 606 ARLEILKQCAKKM 618 (693)
T ss_pred HHHHHHHHHHhcC
Confidence 8889999888543
No 156
>PRK08118 topology modulation protein; Reviewed
Probab=97.52 E-value=5.7e-05 Score=67.01 Aligned_cols=35 Identities=20% Similarity=0.392 Sum_probs=28.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhhhhc-CCCCeEEE
Q 010355 171 HMIGAYGMAGVGKTMLVKEVARQAKAD-KLFDEVVY 205 (512)
Q Consensus 171 ~vi~I~G~gGiGKTtLa~~v~~~~~~~-~~f~~~~w 205 (512)
+-|.|+|++|+||||||+.+++..... -+|+..+|
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 358999999999999999999987643 34676776
No 157
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=97.52 E-value=0.0016 Score=57.35 Aligned_cols=133 Identities=15% Similarity=0.173 Sum_probs=73.1
Q ss_pred cchHHHHHHHHHhcCCCc-eEEEEEcCCCCcHHHHHHHHHHhhhhcCC------------------CCeEEEEEeCCC--
Q 010355 153 SRMSTLNDVINALKNPDV-HMIGAYGMAGVGKTMLVKEVARQAKADKL------------------FDEVVYAEVSQR-- 211 (512)
Q Consensus 153 gR~~~l~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~------------------f~~~~wv~~~~~-- 211 (512)
|.+..++.|...+..+.. +.+.++|+.|+||+++|..+++..--... ..-+.|+.-...
T Consensus 1 gq~~~~~~L~~~~~~~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~ 80 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSGRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKKKK 80 (162)
T ss_dssp S-HHHHHHHHHHHHCTC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTSSS
T ss_pred CcHHHHHHHHHHHHcCCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEecccccc
Confidence 455667777777776664 56899999999999999999887532211 122344433322
Q ss_pred -CCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHhCCCeEEEEEeCCCCh--hhhhhh----CCCCCCCCeEEEEEeCC
Q 010355 212 -PDVKKIQGQIADKLGLKFYEESESGRARKLCERLKKEKKILVILDDIWTN--LDLENV----GIPFGVRGCRVLMTARS 284 (512)
Q Consensus 212 -~~~~~ll~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~--~~~~~l----~~~~~~~gs~iivTtR~ 284 (512)
....++. .+...+..... .+++-++|||++... ...+.+ --| ..++++|++|++
T Consensus 81 ~i~i~~ir-~i~~~~~~~~~----------------~~~~KviiI~~ad~l~~~a~NaLLK~LEep--p~~~~fiL~t~~ 141 (162)
T PF13177_consen 81 SIKIDQIR-EIIEFLSLSPS----------------EGKYKVIIIDEADKLTEEAQNALLKTLEEP--PENTYFILITNN 141 (162)
T ss_dssp SBSHHHHH-HHHHHCTSS-T----------------TSSSEEEEEETGGGS-HHHHHHHHHHHHST--TTTEEEEEEES-
T ss_pred hhhHHHHH-HHHHHHHHHHh----------------cCCceEEEeehHhhhhHHHHHHHHHHhcCC--CCCEEEEEEECC
Confidence 2333322 44333332211 235678999999753 333333 223 468888888887
Q ss_pred cch-hccccCCccceecCCCC
Q 010355 285 QDV-LSSKMDCQNNFLIGVLN 304 (512)
Q Consensus 285 ~~v-~~~~~~~~~~~~l~~L~ 304 (512)
... ..........+.+.+|+
T Consensus 142 ~~~il~TI~SRc~~i~~~~ls 162 (162)
T PF13177_consen 142 PSKILPTIRSRCQVIRFRPLS 162 (162)
T ss_dssp GGGS-HHHHTTSEEEEE----
T ss_pred hHHChHHHHhhceEEecCCCC
Confidence 653 23233444567776664
No 158
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=97.51 E-value=0.0045 Score=61.28 Aligned_cols=160 Identities=14% Similarity=0.140 Sum_probs=94.7
Q ss_pred HHHHHHHhcCCC-ceEEEEEcCCCCcHHHHHHHHHHhhhhcC--------------------CCCeEEEEEeCCCCCHHH
Q 010355 158 LNDVINALKNPD-VHMIGAYGMAGVGKTMLVKEVARQAKADK--------------------LFDEVVYAEVSQRPDVKK 216 (512)
Q Consensus 158 l~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~--------------------~f~~~~wv~~~~~~~~~~ 216 (512)
-++|...+..++ .+.+.++|+.|+||+++|..++...--.. |.| +.++.-...
T Consensus 11 ~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD-~~~i~p~~~----- 84 (334)
T PRK07993 11 YEQLVGSYQAGRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPD-YYTLTPEKG----- 84 (334)
T ss_pred HHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCC-EEEEecccc-----
Confidence 456666666544 57888999999999999999888753111 111 111111000
Q ss_pred HHHHHHHHhCCCCCCCCchHHHHHHHHHHh----CCCeEEEEEeCCCCh--hh----hhhhCCCCCCCCeEEEEEeCCcc
Q 010355 217 IQGQIADKLGLKFYEESESGRARKLCERLK----KEKKILVILDDIWTN--LD----LENVGIPFGVRGCRVLMTARSQD 286 (512)
Q Consensus 217 ll~~i~~~l~~~~~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~--~~----~~~l~~~~~~~gs~iivTtR~~~ 286 (512)
...-..+.+..+.+.+. .+++-++|+|+++.. .. +..+--| ..++.+|++|.+..
T Consensus 85 -------------~~~I~idqiR~l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEP--p~~t~fiL~t~~~~ 149 (334)
T PRK07993 85 -------------KSSLGVDAVREVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEP--PENTWFFLACREPA 149 (334)
T ss_pred -------------cccCCHHHHHHHHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCC--CCCeEEEEEECChh
Confidence 00011223334444432 356779999998643 22 2333333 45677777766543
Q ss_pred -hhccccCCccceecCCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChhHHH
Q 010355 287 -VLSSKMDCQNNFLIGVLNESEARDLFKKLVGDKIENNDLKSLAMNIVKACRGLPIAIV 344 (512)
Q Consensus 287 -v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~GlPLai~ 344 (512)
+.....+....+.+.+++.+++...+....+ .+ ...+..++..++|.|....
T Consensus 150 ~lLpTIrSRCq~~~~~~~~~~~~~~~L~~~~~---~~---~~~a~~~~~la~G~~~~Al 202 (334)
T PRK07993 150 RLLATLRSRCRLHYLAPPPEQYALTWLSREVT---MS---QDALLAALRLSAGAPGAAL 202 (334)
T ss_pred hChHHHHhccccccCCCCCHHHHHHHHHHccC---CC---HHHHHHHHHHcCCCHHHHH
Confidence 4333344556889999999999988865432 11 2236678999999997443
No 159
>PRK09354 recA recombinase A; Provisional
Probab=97.49 E-value=0.00041 Score=68.19 Aligned_cols=83 Identities=17% Similarity=0.220 Sum_probs=55.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCC------CCCchHHHHHHHH
Q 010355 170 VHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIADKLGLKFY------EESESGRARKLCE 243 (512)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~i~~~l~~~~~------~~~~~~~~~~l~~ 243 (512)
-+++-|+|++|+|||||+.+++..... .-..++|++....+++. .++++|.... ..+.......+..
T Consensus 60 G~IteI~G~~GsGKTtLal~~~~~~~~--~G~~~~yId~E~s~~~~-----~a~~lGvdld~lli~qp~~~Eq~l~i~~~ 132 (349)
T PRK09354 60 GRIVEIYGPESSGKTTLALHAIAEAQK--AGGTAAFIDAEHALDPV-----YAKKLGVDIDNLLVSQPDTGEQALEIADT 132 (349)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH--cCCcEEEECCccchHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHHH
Confidence 478999999999999999998877653 24678899887776652 4555554321 1122223333333
Q ss_pred HHhCCCeEEEEEeCCC
Q 010355 244 RLKKEKKILVILDDIW 259 (512)
Q Consensus 244 ~l~~~k~~LlVlDdv~ 259 (512)
.++.+..-|||+|.|-
T Consensus 133 li~s~~~~lIVIDSva 148 (349)
T PRK09354 133 LVRSGAVDLIVVDSVA 148 (349)
T ss_pred HhhcCCCCEEEEeChh
Confidence 3445667899999985
No 160
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.49 E-value=0.00052 Score=63.40 Aligned_cols=86 Identities=20% Similarity=0.208 Sum_probs=53.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHh-C---CC---CCCCCc---hHHHH
Q 010355 170 VHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIADKL-G---LK---FYEESE---SGRAR 239 (512)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~i~~~l-~---~~---~~~~~~---~~~~~ 239 (512)
-.++.|+|++|+|||+|+.+++..... ....++|++... +++..+.+. +... . .. ....+. ...+.
T Consensus 12 g~i~~i~G~~GsGKT~l~~~~~~~~~~--~g~~v~yi~~e~-~~~~rl~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 87 (209)
T TIGR02237 12 GTITQIYGPPGSGKTNICMILAVNAAR--QGKKVVYIDTEG-LSPERFKQI-AEDRPERALSNFIVFEVFDFDEQGVAIQ 87 (209)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHh--CCCeEEEEECCC-CCHHHHHHH-HHhChHHHhcCEEEEECCCHHHHHHHHH
Confidence 478999999999999999999877653 256789999876 555554443 2221 0 00 000111 11234
Q ss_pred HHHHHHhCCCeEEEEEeCCC
Q 010355 240 KLCERLKKEKKILVILDDIW 259 (512)
Q Consensus 240 ~l~~~l~~~k~~LlVlDdv~ 259 (512)
.+...+...+.-+||+|.+.
T Consensus 88 ~l~~~~~~~~~~lvVIDSis 107 (209)
T TIGR02237 88 KTSKFIDRDSASLVVVDSFT 107 (209)
T ss_pred HHHHHHhhcCccEEEEeCcH
Confidence 44444444456789999884
No 161
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.47 E-value=0.0012 Score=72.60 Aligned_cols=102 Identities=20% Similarity=0.239 Sum_probs=58.7
Q ss_pred ccccchHHHHHHHHHhcC-------C--CceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCCCHHHHHHH
Q 010355 150 AFESRMSTLNDVINALKN-------P--DVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQ 220 (512)
Q Consensus 150 ~~~gR~~~l~~l~~~L~~-------~--~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~ 220 (512)
.++|.+..++.|...+.. . ...++.++|++|+|||+||+.++.... ...+.++.+.......
T Consensus 455 ~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~-----~~~~~~d~se~~~~~~---- 525 (731)
T TIGR02639 455 KIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALG-----VHLERFDMSEYMEKHT---- 525 (731)
T ss_pred ceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhc-----CCeEEEeCchhhhccc----
Confidence 456777777777766651 1 234688999999999999999998763 2345555544222111
Q ss_pred HHHHhCCCCCCCCchHHHHHHHHHHhCCCeEEEEEeCCCCh
Q 010355 221 IADKLGLKFYEESESGRARKLCERLKKEKKILVILDDIWTN 261 (512)
Q Consensus 221 i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~ 261 (512)
+...+|.+..-. .......+.+.++.....+|+||+++..
T Consensus 526 ~~~lig~~~gyv-g~~~~~~l~~~~~~~p~~VvllDEieka 565 (731)
T TIGR02639 526 VSRLIGAPPGYV-GFEQGGLLTEAVRKHPHCVLLLDEIEKA 565 (731)
T ss_pred HHHHhcCCCCCc-ccchhhHHHHHHHhCCCeEEEEechhhc
Confidence 111222221111 1111223445555445679999999743
No 162
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=97.47 E-value=0.0017 Score=62.07 Aligned_cols=168 Identities=20% Similarity=0.200 Sum_probs=102.2
Q ss_pred ccccccchHHHHHHHHHhc----CCCceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCCC-HHHHHHHHH
Q 010355 148 YEAFESRMSTLNDVINALK----NPDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPD-VKKIQGQIA 222 (512)
Q Consensus 148 ~~~~~gR~~~l~~l~~~L~----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~-~~~ll~~i~ 222 (512)
...++|-.++-..|-.|+. .+....+.|+|+.|+|||+|......+.+ ..-...+-|.+.+..- -+-.++.|.
T Consensus 23 ~~~l~g~~~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~~q--~~~E~~l~v~Lng~~~~dk~al~~I~ 100 (408)
T KOG2228|consen 23 HINLFGVQDEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSDIQ--ENGENFLLVRLNGELQTDKIALKGIT 100 (408)
T ss_pred CcceeehHHHHHHHHHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhhHH--hcCCeEEEEEECccchhhHHHHHHHH
Confidence 3457788888777777776 34556788999999999999888777632 2223444555544432 233455555
Q ss_pred HHhCCCCC-----CCCchHHHHHHHHHHhC-----CCeEEEEEeCCCChhh-------hhh--hCCCCCCCCeEEEEEeC
Q 010355 223 DKLGLKFY-----EESESGRARKLCERLKK-----EKKILVILDDIWTNLD-------LEN--VGIPFGVRGCRVLMTAR 283 (512)
Q Consensus 223 ~~l~~~~~-----~~~~~~~~~~l~~~l~~-----~k~~LlVlDdv~~~~~-------~~~--l~~~~~~~gs~iivTtR 283 (512)
.++..... ..+-.+....+...|.. +.++++|+|.++-... .+. +......|-|.|-+|||
T Consensus 101 rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Ttr 180 (408)
T KOG2228|consen 101 RQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTTR 180 (408)
T ss_pred HHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeecc
Confidence 55533221 12334556777777763 3468888888753211 111 11111255678889999
Q ss_pred Ccchh------ccccCCccceecCCCCHHHHHHHHHHHhC
Q 010355 284 SQDVL------SSKMDCQNNFLIGVLNESEARDLFKKLVG 317 (512)
Q Consensus 284 ~~~v~------~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~ 317 (512)
-.-.- ........++-+++++-.+...++++.+.
T Consensus 181 ld~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll~ 220 (408)
T KOG2228|consen 181 LDILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLLS 220 (408)
T ss_pred ccHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHhc
Confidence 65321 11223334666778899999999998873
No 163
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.47 E-value=0.00056 Score=64.32 Aligned_cols=88 Identities=18% Similarity=0.235 Sum_probs=52.8
Q ss_pred HHHHHHHHhcC--CCceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCc
Q 010355 157 TLNDVINALKN--PDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIADKLGLKFYEESE 234 (512)
Q Consensus 157 ~l~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~i~~~l~~~~~~~~~ 234 (512)
.+..+..+..+ .+...+.++|.+|+|||+||..+++..... -..+++++ ..+++..+-..... ..
T Consensus 84 al~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l~~~--g~~v~~it------~~~l~~~l~~~~~~--~~--- 150 (244)
T PRK07952 84 ALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELLLR--GKSVLIIT------VADIMSAMKDTFSN--SE--- 150 (244)
T ss_pred HHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHhc--CCeEEEEE------HHHHHHHHHHHHhh--cc---
Confidence 34444444432 234578999999999999999999987643 34556664 34555554433320 00
Q ss_pred hHHHHHHHHHHhCCCeEEEEEeCCCC
Q 010355 235 SGRARKLCERLKKEKKILVILDDIWT 260 (512)
Q Consensus 235 ~~~~~~l~~~l~~~k~~LlVlDdv~~ 260 (512)
.....+.+.+. +.=||||||+..
T Consensus 151 -~~~~~~l~~l~--~~dlLvIDDig~ 173 (244)
T PRK07952 151 -TSEEQLLNDLS--NVDLLVIDEIGV 173 (244)
T ss_pred -ccHHHHHHHhc--cCCEEEEeCCCC
Confidence 11234455554 345889999953
No 164
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.46 E-value=0.0023 Score=60.16 Aligned_cols=169 Identities=22% Similarity=0.270 Sum_probs=91.4
Q ss_pred cccccchHHHHHHHHHhc----------C--CCceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCCCHHH
Q 010355 149 EAFESRMSTLNDVINALK----------N--PDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKK 216 (512)
Q Consensus 149 ~~~~gR~~~l~~l~~~L~----------~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 216 (512)
..+-|-+...+.|.+... . ...+-|.++|++|.||+.||++|+..... .|++++.. +
T Consensus 133 sDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAnS-------TFFSvSSS----D 201 (439)
T KOG0739|consen 133 SDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEANS-------TFFSVSSS----D 201 (439)
T ss_pred hhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcCC-------ceEEeehH----H
Confidence 344455555555555432 2 23688999999999999999999976642 23445442 1
Q ss_pred HHHHHHHHhCCCCCCCCchHHHHHHHHHHhCCCeEEEEEeCCCCh---------hhhh--------hh-CCCCCCCCeEE
Q 010355 217 IQGQIADKLGLKFYEESESGRARKLCERLKKEKKILVILDDIWTN---------LDLE--------NV-GIPFGVRGCRV 278 (512)
Q Consensus 217 ll~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~---------~~~~--------~l-~~~~~~~gs~i 278 (512)
+... .+| ....++..|++..+..|+-+|++|.|... +.-. ++ +......|..|
T Consensus 202 LvSK---WmG------ESEkLVknLFemARe~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~d~~gvLV 272 (439)
T KOG0739|consen 202 LVSK---WMG------ESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGNDNDGVLV 272 (439)
T ss_pred HHHH---Hhc------cHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhccccCCCceEE
Confidence 2111 122 12334566666667789999999998632 1111 11 11111455666
Q ss_pred EEEeCCcchhcccc--CCccceecCCCCHHHHH-HHHHHHhCCCCCCchhHHHHHHHHHHcCCC
Q 010355 279 LMTARSQDVLSSKM--DCQNNFLIGVLNESEAR-DLFKKLVGDKIENNDLKSLAMNIVKACRGL 339 (512)
Q Consensus 279 ivTtR~~~v~~~~~--~~~~~~~l~~L~~~ea~-~Lf~~~~~~~~~~~~~~~~~~~I~~~~~Gl 339 (512)
|-.|..+-++.... .-...|.+ ||+...|. .+|.-+++.... .....-.+.+.+++.|.
T Consensus 273 LgATNiPw~LDsAIRRRFekRIYI-PLPe~~AR~~MF~lhlG~tp~-~LT~~d~~eL~~kTeGy 334 (439)
T KOG0739|consen 273 LGATNIPWVLDSAIRRRFEKRIYI-PLPEAHARARMFKLHLGDTPH-VLTEQDFKELARKTEGY 334 (439)
T ss_pred EecCCCchhHHHHHHHHhhcceec-cCCcHHHhhhhheeccCCCcc-ccchhhHHHHHhhcCCC
Confidence 66676655442111 11123333 35555444 455555553322 22233456777777765
No 165
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=97.46 E-value=0.0004 Score=65.94 Aligned_cols=81 Identities=22% Similarity=0.259 Sum_probs=52.4
Q ss_pred HHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCchHHHHH
Q 010355 161 VINALKNPDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIADKLGLKFYEESESGRARK 240 (512)
Q Consensus 161 l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~i~~~l~~~~~~~~~~~~~~~ 240 (512)
+..++. +..-+.++|.+|+|||.||.++.+... + .--.+.+++ ..+++..|...... ......
T Consensus 98 ~~~~~~--~~~nl~l~G~~G~GKThLa~Ai~~~l~-~-~g~sv~f~~------~~el~~~Lk~~~~~-------~~~~~~ 160 (254)
T COG1484 98 LVEFFE--RGENLVLLGPPGVGKTHLAIAIGNELL-K-AGISVLFIT------APDLLSKLKAAFDE-------GRLEEK 160 (254)
T ss_pred HHHHhc--cCCcEEEECCCCCcHHHHHHHHHHHHH-H-cCCeEEEEE------HHHHHHHHHHHHhc-------CchHHH
Confidence 334444 567899999999999999999999987 2 233455554 44566666554432 112233
Q ss_pred HHHHHhCCCeEEEEEeCCCC
Q 010355 241 LCERLKKEKKILVILDDIWT 260 (512)
Q Consensus 241 l~~~l~~~k~~LlVlDdv~~ 260 (512)
+.+.+. +-=||||||+-.
T Consensus 161 l~~~l~--~~dlLIiDDlG~ 178 (254)
T COG1484 161 LLRELK--KVDLLIIDDIGY 178 (254)
T ss_pred HHHHhh--cCCEEEEecccC
Confidence 444443 346999999953
No 166
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=97.46 E-value=0.006 Score=60.30 Aligned_cols=99 Identities=16% Similarity=0.227 Sum_probs=59.9
Q ss_pred HHHHHHHHHh----CCCeEEEEEeCCCCh--hhhhhh----CCCCCCCCeEEEEEeCC-cchhccccCCccceecCCCCH
Q 010355 237 RARKLCERLK----KEKKILVILDDIWTN--LDLENV----GIPFGVRGCRVLMTARS-QDVLSSKMDCQNNFLIGVLNE 305 (512)
Q Consensus 237 ~~~~l~~~l~----~~k~~LlVlDdv~~~--~~~~~l----~~~~~~~gs~iivTtR~-~~v~~~~~~~~~~~~l~~L~~ 305 (512)
.+..+.+.+. .+++-++|+|++... ...+.+ --| .+++.+|++|.+ ..+.....+....+.+.+++.
T Consensus 116 qiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEP--p~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~ 193 (342)
T PRK06964 116 QVRALLDFCGVGTHRGGARVVVLYPAEALNVAAANALLKTLEEP--PPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAP 193 (342)
T ss_pred HHHHHHHHhccCCccCCceEEEEechhhcCHHHHHHHHHHhcCC--CcCcEEEEEECChhhCcHHHHhcCEEEEecCCCH
Confidence 3444444443 245668889998743 333333 222 456666666555 444433344557899999999
Q ss_pred HHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChhHHHHH
Q 010355 306 SEARDLFKKLVGDKIENNDLKSLAMNIVKACRGLPIAIVTI 346 (512)
Q Consensus 306 ~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~GlPLai~~i 346 (512)
++..+.+... + . .+ ...++..++|.|+.+..+
T Consensus 194 ~~~~~~L~~~-~--~-~~-----~~~~l~~~~Gsp~~Al~~ 225 (342)
T PRK06964 194 EAAAAWLAAQ-G--V-AD-----ADALLAEAGGAPLAALAL 225 (342)
T ss_pred HHHHHHHHHc-C--C-Ch-----HHHHHHHcCCCHHHHHHH
Confidence 9999988775 2 1 11 123578899999755443
No 167
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.45 E-value=0.0011 Score=66.83 Aligned_cols=88 Identities=23% Similarity=0.329 Sum_probs=58.1
Q ss_pred cchHHHHHHHHHhcCC---------CceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCCCHHHHHHHHHH
Q 010355 153 SRMSTLNDVINALKNP---------DVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIAD 223 (512)
Q Consensus 153 gR~~~l~~l~~~L~~~---------~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~i~~ 223 (512)
.-..++++|+++|.++ =++-|.++|++|.|||-||++++-...+- | |...+..| .+++-
T Consensus 311 EAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VP--F----F~~sGSEF--dEm~V---- 378 (752)
T KOG0734|consen 311 EAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVP--F----FYASGSEF--DEMFV---- 378 (752)
T ss_pred HHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCC--e----Eeccccch--hhhhh----
Confidence 3456888999998843 25678999999999999999999877653 2 22222222 11111
Q ss_pred HhCCCCCCCCchHHHHHHHHHHhCCCeEEEEEeCCCC
Q 010355 224 KLGLKFYEESESGRARKLCERLKKEKKILVILDDIWT 260 (512)
Q Consensus 224 ~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~ 260 (512)
......+..|+..-+..-+|+|++|.++.
T Consensus 379 --------GvGArRVRdLF~aAk~~APcIIFIDEiDa 407 (752)
T KOG0734|consen 379 --------GVGARRVRDLFAAAKARAPCIIFIDEIDA 407 (752)
T ss_pred --------cccHHHHHHHHHHHHhcCCeEEEEechhh
Confidence 01123455666666666899999999853
No 168
>PRK08181 transposase; Validated
Probab=97.43 E-value=0.00081 Score=64.19 Aligned_cols=77 Identities=19% Similarity=0.186 Sum_probs=48.5
Q ss_pred HHhcCCCceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHH
Q 010355 163 NALKNPDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIADKLGLKFYEESESGRARKLC 242 (512)
Q Consensus 163 ~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~i~~~l~~~~~~~~~~~~~~~l~ 242 (512)
.|+.. ...+.|+|++|+|||.||..+++..... ...++|++ ..+++..+..... . .....+.
T Consensus 101 ~~~~~--~~nlll~Gp~GtGKTHLa~Aia~~a~~~--g~~v~f~~------~~~L~~~l~~a~~----~----~~~~~~l 162 (269)
T PRK08181 101 SWLAK--GANLLLFGPPGGGKSHLAAAIGLALIEN--GWRVLFTR------TTDLVQKLQVARR----E----LQLESAI 162 (269)
T ss_pred HHHhc--CceEEEEecCCCcHHHHHHHHHHHHHHc--CCceeeee------HHHHHHHHHHHHh----C----CcHHHHH
Confidence 46553 3568999999999999999999876532 34456664 3455555533211 0 1122344
Q ss_pred HHHhCCCeEEEEEeCCC
Q 010355 243 ERLKKEKKILVILDDIW 259 (512)
Q Consensus 243 ~~l~~~k~~LlVlDdv~ 259 (512)
+.+. +.=||||||+.
T Consensus 163 ~~l~--~~dLLIIDDlg 177 (269)
T PRK08181 163 AKLD--KFDLLILDDLA 177 (269)
T ss_pred HHHh--cCCEEEEeccc
Confidence 4554 45699999995
No 169
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.42 E-value=0.00063 Score=61.91 Aligned_cols=87 Identities=26% Similarity=0.350 Sum_probs=56.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCC-CCCHHHHHHHHHHHhCCCCCCC----CchHHHHHHHHH
Q 010355 170 VHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQ-RPDVKKIQGQIADKLGLKFYEE----SESGRARKLCER 244 (512)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~-~~~~~~ll~~i~~~l~~~~~~~----~~~~~~~~l~~~ 244 (512)
++++.++|+.|+||||.+.+++.....+ -..+..++... .....+-++..++.++.+.... +.........+.
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~--~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~ 78 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLK--GKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEK 78 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHT--T--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhc--cccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHH
Confidence 3789999999999999999888887754 44566676643 3466677888888888764321 223333334444
Q ss_pred HhCCCeEEEEEeCC
Q 010355 245 LKKEKKILVILDDI 258 (512)
Q Consensus 245 l~~~k~~LlVlDdv 258 (512)
+...+.=+|++|-.
T Consensus 79 ~~~~~~D~vlIDT~ 92 (196)
T PF00448_consen 79 FRKKGYDLVLIDTA 92 (196)
T ss_dssp HHHTTSSEEEEEE-
T ss_pred HhhcCCCEEEEecC
Confidence 43323347778866
No 170
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=97.40 E-value=0.00089 Score=63.08 Aligned_cols=89 Identities=24% Similarity=0.263 Sum_probs=55.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhhhhcCC----CCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCC----------CCc-
Q 010355 170 VHMIGAYGMAGVGKTMLVKEVARQAKADKL----FDEVVYAEVSQRPDVKKIQGQIADKLGLKFYE----------ESE- 234 (512)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----f~~~~wv~~~~~~~~~~ll~~i~~~l~~~~~~----------~~~- 234 (512)
-.++.|+|.+|+|||+|+.+++........ ...++|++....++...+. ++++..+..... .+.
T Consensus 19 g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~-~~~~~~~~~~~~~~~~i~~~~~~~~~ 97 (235)
T cd01123 19 GSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLV-QIAERFGLDPEEVLDNIYVARAYNSD 97 (235)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHH-HHHHHhccChHhHhcCEEEEecCCHH
Confidence 478999999999999999999865432221 3578999988776655443 344443322110 011
Q ss_pred --hHHHHHHHHHHhCC-CeEEEEEeCCC
Q 010355 235 --SGRARKLCERLKKE-KKILVILDDIW 259 (512)
Q Consensus 235 --~~~~~~l~~~l~~~-k~~LlVlDdv~ 259 (512)
...+..+...+.+. +.-|||+|.+.
T Consensus 98 ~l~~~l~~l~~~l~~~~~~~liVIDSis 125 (235)
T cd01123 98 HQLQLLEELEAILIESSRIKLVIVDSVT 125 (235)
T ss_pred HHHHHHHHHHHHHhhcCCeeEEEEeCcH
Confidence 12233444455555 77899999985
No 171
>PRK06835 DNA replication protein DnaC; Validated
Probab=97.40 E-value=0.0097 Score=58.63 Aligned_cols=99 Identities=17% Similarity=0.279 Sum_probs=55.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHhCCCe
Q 010355 171 HMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIADKLGLKFYEESESGRARKLCERLKKEKK 250 (512)
Q Consensus 171 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~ 250 (512)
..+.|+|.+|+|||.||..+++....+ -..++|+++. .++..+...- .. .. .. .....+.+. .-
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~--g~~V~y~t~~------~l~~~l~~~~-~~--~~--~~-~~~~~~~l~--~~ 247 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDR--GKSVIYRTAD------ELIEILREIR-FN--ND--KE-LEEVYDLLI--NC 247 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHC--CCeEEEEEHH------HHHHHHHHHH-hc--cc--hh-HHHHHHHhc--cC
Confidence 779999999999999999999987643 3356676543 3444443211 00 00 01 111234443 23
Q ss_pred EEEEEeCCCCh--hhh--hhhCCCCC---CCCeEEEEEeCCc
Q 010355 251 ILVILDDIWTN--LDL--ENVGIPFG---VRGCRVLMTARSQ 285 (512)
Q Consensus 251 ~LlVlDdv~~~--~~~--~~l~~~~~---~~gs~iivTtR~~ 285 (512)
=||||||+... ..| ..+...+. ..+..+||||...
T Consensus 248 DLLIIDDlG~e~~t~~~~~~Lf~iin~R~~~~k~tIiTSNl~ 289 (329)
T PRK06835 248 DLLIIDDLGTEKITEFSKSELFNLINKRLLRQKKMIISTNLS 289 (329)
T ss_pred CEEEEeccCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 58999999432 122 11211111 3355688888754
No 172
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.40 E-value=0.0039 Score=63.07 Aligned_cols=157 Identities=20% Similarity=0.309 Sum_probs=82.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHH--
Q 010355 168 PDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIADKLGLKFYEESESGRARKLCERL-- 245 (512)
Q Consensus 168 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~i~~~l~~~~~~~~~~~~~~~l~~~l-- 245 (512)
.+...+.+.|++|+|||+||..++.... |..+--++..... |. +.......+...+
T Consensus 536 s~lvSvLl~Gp~~sGKTaLAA~iA~~S~----FPFvKiiSpe~mi-------------G~-----sEsaKc~~i~k~F~D 593 (744)
T KOG0741|consen 536 SPLVSVLLEGPPGSGKTALAAKIALSSD----FPFVKIISPEDMI-------------GL-----SESAKCAHIKKIFED 593 (744)
T ss_pred CcceEEEEecCCCCChHHHHHHHHhhcC----CCeEEEeChHHcc-------------Cc-----cHHHHHHHHHHHHHH
Confidence 4567888999999999999999987643 6554433221111 11 1111122222222
Q ss_pred -hCCCeEEEEEeCCCChhhhhhhCCCC---------------CCCCeE--EEEEeCCcchhcc--ccC-CccceecCCCC
Q 010355 246 -KKEKKILVILDDIWTNLDLENVGIPF---------------GVRGCR--VLMTARSQDVLSS--KMD-CQNNFLIGVLN 304 (512)
Q Consensus 246 -~~~k~~LlVlDdv~~~~~~~~l~~~~---------------~~~gs~--iivTtR~~~v~~~--~~~-~~~~~~l~~L~ 304 (512)
.+..--+||+||+....+|..++..+ +..|-| |+-||....+... .+. -...|.++.|+
T Consensus 594 AYkS~lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~ 673 (744)
T KOG0741|consen 594 AYKSPLSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNLT 673 (744)
T ss_pred hhcCcceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCccC
Confidence 22355789999997766554432111 123333 4445555444421 111 22578888888
Q ss_pred H-HHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChhHHHHHHHHh
Q 010355 305 E-SEARDLFKKLVGDKIENNDLKSLAMNIVKACRGLPIAIVTIARAL 350 (512)
Q Consensus 305 ~-~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~GlPLai~~ia~~L 350 (512)
. ++..+.++..- .......+.++.+...+| +-..|+.+-.++
T Consensus 674 ~~~~~~~vl~~~n--~fsd~~~~~~~~~~~~~~--~~vgIKklL~li 716 (744)
T KOG0741|consen 674 TGEQLLEVLEELN--IFSDDEVRAIAEQLLSKK--VNVGIKKLLMLI 716 (744)
T ss_pred chHHHHHHHHHcc--CCCcchhHHHHHHHhccc--cchhHHHHHHHH
Confidence 7 66667666542 111233344566666665 223344444443
No 173
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.40 E-value=0.0026 Score=71.22 Aligned_cols=106 Identities=22% Similarity=0.247 Sum_probs=60.9
Q ss_pred cccccchHHHHHHHHHhcC-------C--CceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCCCHHHHHH
Q 010355 149 EAFESRMSTLNDVINALKN-------P--DVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQG 219 (512)
Q Consensus 149 ~~~~gR~~~l~~l~~~L~~-------~--~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ll~ 219 (512)
..++|....+..+...+.. . ...++.++|++|+|||+||+.++...... ....+.++++....... .
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~--~~~~i~~d~s~~~~~~~-~- 640 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDD--EDAMVRIDMSEYMEKHS-V- 640 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCC--CCcEEEEechhhcccch-H-
Confidence 3578888888888887752 1 23578899999999999999999875421 23344555554322111 1
Q ss_pred HHHHHhCCCCCCCCchHHHHHHHHHHhCCCeEEEEEeCCCCh
Q 010355 220 QIADKLGLKFYEESESGRARKLCERLKKEKKILVILDDIWTN 261 (512)
Q Consensus 220 ~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~ 261 (512)
..-+|.++.-. .......+...++.....+|+||++...
T Consensus 641 --~~l~g~~~g~~-g~~~~g~l~~~v~~~p~~vlllDeieka 679 (852)
T TIGR03346 641 --ARLIGAPPGYV-GYEEGGQLTEAVRRKPYSVVLFDEVEKA 679 (852)
T ss_pred --HHhcCCCCCcc-CcccccHHHHHHHcCCCcEEEEeccccC
Confidence 11122221111 0111123444444444569999999743
No 174
>PRK04296 thymidine kinase; Provisional
Probab=97.38 E-value=0.00035 Score=63.47 Aligned_cols=111 Identities=17% Similarity=0.136 Sum_probs=63.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCC---CCchHHHHHHHHHHhC
Q 010355 171 HMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIADKLGLKFYE---ESESGRARKLCERLKK 247 (512)
Q Consensus 171 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~i~~~l~~~~~~---~~~~~~~~~l~~~l~~ 247 (512)
.++.|+|+.|.||||++..++.+.... ...++.+. ..++.......++.+++..... .........+.. ..
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~~--g~~v~i~k--~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~--~~ 76 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEER--GMKVLVFK--PAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEE--EG 76 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHc--CCeEEEEe--ccccccccCCcEecCCCCcccceEeCChHHHHHHHHh--hC
Confidence 478899999999999999998887532 33344442 1112222244566666654332 111222222322 33
Q ss_pred CCeEEEEEeCCCCh--hhhhhhCCCCCCCCeEEEEEeCCcch
Q 010355 248 EKKILVILDDIWTN--LDLENVGIPFGVRGCRVLMTARSQDV 287 (512)
Q Consensus 248 ~k~~LlVlDdv~~~--~~~~~l~~~~~~~gs~iivTtR~~~v 287 (512)
++.-+||+|.+.-. .++..+...+...|..||+|.+....
T Consensus 77 ~~~dvviIDEaq~l~~~~v~~l~~~l~~~g~~vi~tgl~~~~ 118 (190)
T PRK04296 77 EKIDCVLIDEAQFLDKEQVVQLAEVLDDLGIPVICYGLDTDF 118 (190)
T ss_pred CCCCEEEEEccccCCHHHHHHHHHHHHHcCCeEEEEecCccc
Confidence 34458999999532 22333322223568889999998643
No 175
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=97.36 E-value=0.012 Score=58.24 Aligned_cols=42 Identities=29% Similarity=0.468 Sum_probs=33.0
Q ss_pred HHHHHHHHHhcC---CCceEEEEEcCCCCcHHHHHHHHHHhhhhc
Q 010355 156 STLNDVINALKN---PDVHMIGAYGMAGVGKTMLVKEVARQAKAD 197 (512)
Q Consensus 156 ~~l~~l~~~L~~---~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~ 197 (512)
...+.|.+.+.+ ....+|+|.|.=|+||||+.+.+.+.....
T Consensus 3 ~~a~~la~~I~~~~~~~~~~IgL~G~WGsGKSs~l~~l~~~L~~~ 47 (325)
T PF07693_consen 3 PYAKALAEIIKNPDSDDPFVIGLYGEWGSGKSSFLNMLKEELKED 47 (325)
T ss_pred HHHHHHHHHHhccCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 334555666653 467899999999999999999999888754
No 176
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=97.36 E-value=0.0094 Score=62.51 Aligned_cols=199 Identities=16% Similarity=0.189 Sum_probs=117.1
Q ss_pred ccccccchHHHHHHHHHhc----C-CCceEEEEEcCCCCcHHHHHHHHHHhhhh---c---CCCCeEEEEEeCCCCCHHH
Q 010355 148 YEAFESRMSTLNDVINALK----N-PDVHMIGAYGMAGVGKTMLVKEVARQAKA---D---KLFDEVVYAEVSQRPDVKK 216 (512)
Q Consensus 148 ~~~~~gR~~~l~~l~~~L~----~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~---~---~~f~~~~wv~~~~~~~~~~ 216 (512)
+..+-+|+.+..+|...+. . .....+-|.|.+|+|||.++..|.+.... + ..|. .+.|+.-.-..+.+
T Consensus 395 p~sLpcRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~-yveINgm~l~~~~~ 473 (767)
T KOG1514|consen 395 PESLPCRENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFD-YVEINGLRLASPRE 473 (767)
T ss_pred cccccchhHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCcc-EEEEcceeecCHHH
Confidence 4456689999988887765 3 34458899999999999999999986541 1 2233 34455555668999
Q ss_pred HHHHHHHHhCCCCCCCCchHHHHHHHHHHh----CCCeEEEEEeCCCChh-----hhhhhCCCCC-CCCeEEEEEeCCc-
Q 010355 217 IQGQIADKLGLKFYEESESGRARKLCERLK----KEKKILVILDDIWTNL-----DLENVGIPFG-VRGCRVLMTARSQ- 285 (512)
Q Consensus 217 ll~~i~~~l~~~~~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~~-----~~~~l~~~~~-~~gs~iivTtR~~- 285 (512)
++..|..++..... .....+..|..++. ..++++|++|+++... .+-.+ +-.+ .++++++|.+=..
T Consensus 474 ~Y~~I~~~lsg~~~--~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~-fdWpt~~~sKLvvi~IaNT 550 (767)
T KOG1514|consen 474 IYEKIWEALSGERV--TWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNI-FDWPTLKNSKLVVIAIANT 550 (767)
T ss_pred HHHHHHHhcccCcc--cHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHH-hcCCcCCCCceEEEEeccc
Confidence 99999998865322 22333445555554 2467899999985432 12222 1111 4667766544221
Q ss_pred -chhcc-------ccCCccceecCCCCHHHHHHHHHHHhCCC--CCCchhHHHHHHHHHHcCCChhHHHHHHHHh
Q 010355 286 -DVLSS-------KMDCQNNFLIGVLNESEARDLFKKLVGDK--IENNDLKSLAMNIVKACRGLPIAIVTIARAL 350 (512)
Q Consensus 286 -~v~~~-------~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~--~~~~~~~~~~~~I~~~~~GlPLai~~ia~~L 350 (512)
..... ..-+...+...|-+..+-.++...++... ......+=++++++...|-.-.|+.+.-+..
T Consensus 551 mdlPEr~l~nrvsSRlg~tRi~F~pYth~qLq~Ii~~RL~~~~~f~~~aielvarkVAavSGDaRraldic~RA~ 625 (767)
T KOG1514|consen 551 MDLPERLLMNRVSSRLGLTRICFQPYTHEQLQEIISARLKGLDAFENKAIELVARKVAAVSGDARRALDICRRAA 625 (767)
T ss_pred ccCHHHHhccchhhhccceeeecCCCCHHHHHHHHHHhhcchhhcchhHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 11100 11123467778888888877777666422 1122233345555555555555555544443
No 177
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=97.35 E-value=0.0016 Score=68.75 Aligned_cols=49 Identities=27% Similarity=0.413 Sum_probs=40.6
Q ss_pred cCccccccchHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHhh
Q 010355 146 KGYEAFESRMSTLNDVINALKNPDVHMIGAYGMAGVGKTMLVKEVARQA 194 (512)
Q Consensus 146 ~~~~~~~gR~~~l~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 194 (512)
.....++|....+..+...+.......+.|+|++|+|||++|+.+++..
T Consensus 62 ~~f~~iiGqs~~i~~l~~al~~~~~~~vLi~Ge~GtGKt~lAr~i~~~~ 110 (531)
T TIGR02902 62 KSFDEIIGQEEGIKALKAALCGPNPQHVIIYGPPGVGKTAAARLVLEEA 110 (531)
T ss_pred CCHHHeeCcHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 3445689999999998887776666778899999999999999998754
No 178
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=97.35 E-value=0.00095 Score=65.11 Aligned_cols=84 Identities=17% Similarity=0.216 Sum_probs=54.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCC------CCCchHHHHHHH
Q 010355 169 DVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIADKLGLKFY------EESESGRARKLC 242 (512)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~i~~~l~~~~~------~~~~~~~~~~l~ 242 (512)
.-+++.|+|++|+||||||.+++...... -..++|++....++.. .+++++.... .....+....+.
T Consensus 54 ~G~iteI~G~~GsGKTtLaL~~~~~~~~~--g~~v~yId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~~~~ 126 (321)
T TIGR02012 54 RGRIIEIYGPESSGKTTLALHAIAEAQKA--GGTAAFIDAEHALDPV-----YARKLGVDIDNLLVSQPDTGEQALEIAE 126 (321)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc--CCcEEEEcccchhHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHH
Confidence 34799999999999999999988776532 4567888877655543 3555554321 112222333333
Q ss_pred HHHhCCCeEEEEEeCCC
Q 010355 243 ERLKKEKKILVILDDIW 259 (512)
Q Consensus 243 ~~l~~~k~~LlVlDdv~ 259 (512)
..+..+..-+||+|.+.
T Consensus 127 ~li~~~~~~lIVIDSv~ 143 (321)
T TIGR02012 127 TLVRSGAVDIIVVDSVA 143 (321)
T ss_pred HHhhccCCcEEEEcchh
Confidence 33445567899999984
No 179
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.33 E-value=0.0036 Score=69.90 Aligned_cols=105 Identities=21% Similarity=0.244 Sum_probs=58.7
Q ss_pred cccccchHHHHHHHHHhcC-------CC--ceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCCCHHHHHH
Q 010355 149 EAFESRMSTLNDVINALKN-------PD--VHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQG 219 (512)
Q Consensus 149 ~~~~gR~~~l~~l~~~L~~-------~~--~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ll~ 219 (512)
..++|....+..|...+.. ++ ..++.++|++|+|||+||+.+++..... ....+.++++.... ...
T Consensus 568 ~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~--~~~~i~id~se~~~-~~~-- 642 (857)
T PRK10865 568 HRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMFDS--DDAMVRIDMSEFME-KHS-- 642 (857)
T ss_pred CeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhhcC--CCcEEEEEhHHhhh-hhh--
Confidence 3577888888887776651 11 2478899999999999999999765321 22344555443211 111
Q ss_pred HHHHHhCCCCCCCCchHHHHHHHHHHhCCCeEEEEEeCCCC
Q 010355 220 QIADKLGLKFYEESESGRARKLCERLKKEKKILVILDDIWT 260 (512)
Q Consensus 220 ~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~ 260 (512)
+..-+|.++.-. .......+...++....-+|+||++..
T Consensus 643 -~~~LiG~~pgy~-g~~~~g~l~~~v~~~p~~vLllDEiek 681 (857)
T PRK10865 643 -VSRLVGAPPGYV-GYEEGGYLTEAVRRRPYSVILLDEVEK 681 (857)
T ss_pred -HHHHhCCCCccc-ccchhHHHHHHHHhCCCCeEEEeehhh
Confidence 111223221111 111112344444433446999999963
No 180
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=97.32 E-value=0.0016 Score=61.37 Aligned_cols=49 Identities=10% Similarity=0.272 Sum_probs=36.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCCCHHHHHHHH
Q 010355 169 DVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQI 221 (512)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~i 221 (512)
...++.|.|.+|+|||+||.++...... .-..++|++... ++.++.+.+
T Consensus 20 ~gs~~lI~G~pGsGKT~la~~~l~~~~~--~ge~~lyvs~ee--~~~~i~~~~ 68 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIFSQQFLWNGLQ--MGEPGIYVALEE--HPVQVRRNM 68 (237)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHH--cCCcEEEEEeeC--CHHHHHHHH
Confidence 3478999999999999999998766432 245688888765 455666553
No 181
>PRK07261 topology modulation protein; Provisional
Probab=97.32 E-value=0.00079 Score=59.98 Aligned_cols=34 Identities=21% Similarity=0.441 Sum_probs=25.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhhhc-CCCCeEEE
Q 010355 172 MIGAYGMAGVGKTMLVKEVARQAKAD-KLFDEVVY 205 (512)
Q Consensus 172 vi~I~G~gGiGKTtLa~~v~~~~~~~-~~f~~~~w 205 (512)
.|+|+|++|+||||||+.+....... -+.+...|
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~ 36 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHF 36 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEe
Confidence 48899999999999999998765432 13455555
No 182
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=97.29 E-value=0.0097 Score=64.18 Aligned_cols=103 Identities=20% Similarity=0.260 Sum_probs=62.3
Q ss_pred ccccchHHHHHHHHHhc---------CCCceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCCCHHHHHHH
Q 010355 150 AFESRMSTLNDVINALK---------NPDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQ 220 (512)
Q Consensus 150 ~~~gR~~~l~~l~~~L~---------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~ 220 (512)
.++|.+..+..+.+.+. +....+..+.|+.|+|||.||++++...-.. =...+-++.|...... .
T Consensus 492 rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~--e~aliR~DMSEy~EkH----s 565 (786)
T COG0542 492 RVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGD--EQALIRIDMSEYMEKH----S 565 (786)
T ss_pred ceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCC--CccceeechHHHHHHH----H
Confidence 46788988888888775 2235678889999999999999999876311 1345555555422111 2
Q ss_pred HHHHhCCCCCCCCchHHHHHHHHHHhCCCeE-EEEEeCCCC
Q 010355 221 IADKLGLKFYEESESGRARKLCERLKKEKKI-LVILDDIWT 260 (512)
Q Consensus 221 i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~-LlVlDdv~~ 260 (512)
+.+-+|.++.-..- +....|-+.+++ +|| +|+||.|..
T Consensus 566 VSrLIGaPPGYVGy-eeGG~LTEaVRr-~PySViLlDEIEK 604 (786)
T COG0542 566 VSRLIGAPPGYVGY-EEGGQLTEAVRR-KPYSVILLDEIEK 604 (786)
T ss_pred HHHHhCCCCCCcee-ccccchhHhhhc-CCCeEEEechhhh
Confidence 22223433221111 113345556665 555 888999964
No 183
>PRK06526 transposase; Provisional
Probab=97.29 E-value=0.00044 Score=65.62 Aligned_cols=73 Identities=21% Similarity=0.205 Sum_probs=43.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHhCCC
Q 010355 170 VHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIADKLGLKFYEESESGRARKLCERLKKEK 249 (512)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k 249 (512)
.+.+.|+|++|+|||+||..+....... -..+.|+ +..+++..+..... .. ........+. +
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~~~--g~~v~f~------t~~~l~~~l~~~~~----~~----~~~~~l~~l~--~ 159 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRACQA--GHRVLFA------TAAQWVARLAAAHH----AG----RLQAELVKLG--R 159 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHHC--CCchhhh------hHHHHHHHHHHHHh----cC----cHHHHHHHhc--c
Confidence 4568999999999999999998876532 1233443 33445555533211 00 1122233332 4
Q ss_pred eEEEEEeCCCC
Q 010355 250 KILVILDDIWT 260 (512)
Q Consensus 250 ~~LlVlDdv~~ 260 (512)
.-||||||+..
T Consensus 160 ~dlLIIDD~g~ 170 (254)
T PRK06526 160 YPLLIVDEVGY 170 (254)
T ss_pred CCEEEEccccc
Confidence 56999999963
No 184
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=97.28 E-value=0.0011 Score=64.70 Aligned_cols=83 Identities=20% Similarity=0.263 Sum_probs=54.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCC------CCCchHHHHHHHH
Q 010355 170 VHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIADKLGLKFY------EESESGRARKLCE 243 (512)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~i~~~l~~~~~------~~~~~~~~~~l~~ 243 (512)
-+++-|+|++|+||||||.+++..... .-..++|++....+++. .++.++.... ..+..+....+..
T Consensus 55 G~iteI~Gp~GsGKTtLal~~~~~~~~--~g~~~vyId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~i~~~ 127 (325)
T cd00983 55 GRIIEIYGPESSGKTTLALHAIAEAQK--LGGTVAFIDAEHALDPV-----YAKKLGVDLDNLLISQPDTGEQALEIADS 127 (325)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH--cCCCEEEECccccHHHH-----HHHHcCCCHHHheecCCCCHHHHHHHHHH
Confidence 478899999999999999998876653 24568899887766542 3445554321 1122223333333
Q ss_pred HHhCCCeEEEEEeCCC
Q 010355 244 RLKKEKKILVILDDIW 259 (512)
Q Consensus 244 ~l~~~k~~LlVlDdv~ 259 (512)
.+..+..-|||+|.|-
T Consensus 128 li~s~~~~lIVIDSva 143 (325)
T cd00983 128 LVRSGAVDLIVVDSVA 143 (325)
T ss_pred HHhccCCCEEEEcchH
Confidence 3345567899999974
No 185
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.25 E-value=0.00025 Score=59.13 Aligned_cols=24 Identities=38% Similarity=0.472 Sum_probs=21.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhh
Q 010355 172 MIGAYGMAGVGKTMLVKEVARQAK 195 (512)
Q Consensus 172 vi~I~G~gGiGKTtLa~~v~~~~~ 195 (512)
+|+|.|++|+||||+|+.+++...
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~~ 24 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERLG 24 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CEEEECCCCCCHHHHHHHHHHHHC
Confidence 689999999999999999998763
No 186
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=97.25 E-value=0.00054 Score=60.70 Aligned_cols=80 Identities=21% Similarity=0.182 Sum_probs=47.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHhCC-CeE
Q 010355 173 IGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIADKLGLKFYEESESGRARKLCERLKKE-KKI 251 (512)
Q Consensus 173 i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~-k~~ 251 (512)
+.|.|.+|+|||++|.+++... ...++++.-...++. ++...|.......+..-...+....+.+.+... +.-
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~~-----~~~~~y~at~~~~d~-em~~rI~~H~~~R~~~w~t~E~~~~l~~~l~~~~~~~ 75 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAEL-----GGPVTYIATAEAFDD-EMAERIARHRKRRPAHWRTIETPRDLVSALKELDPGD 75 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHhc-----CCCeEEEEccCcCCH-HHHHHHHHHHHhCCCCceEeecHHHHHHHHHhcCCCC
Confidence 6799999999999999997651 235667766665544 355555443322222222223333444444321 334
Q ss_pred EEEEeCC
Q 010355 252 LVILDDI 258 (512)
Q Consensus 252 LlVlDdv 258 (512)
.+++|.+
T Consensus 76 ~VLIDcl 82 (169)
T cd00544 76 VVLIDCL 82 (169)
T ss_pred EEEEEcH
Confidence 7999987
No 187
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=97.25 E-value=0.0048 Score=66.81 Aligned_cols=128 Identities=23% Similarity=0.336 Sum_probs=71.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHhCCCe
Q 010355 171 HMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIADKLGLKFYEESESGRARKLCERLKKEKK 250 (512)
Q Consensus 171 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~ 250 (512)
+-|.|+|++|+|||++|+.++..... .| +.++.+. +.. +. .+ .....+..++.......+
T Consensus 186 ~gill~G~~G~GKt~~~~~~a~~~~~--~f---~~is~~~------~~~-~~--~g------~~~~~~~~~f~~a~~~~P 245 (644)
T PRK10733 186 KGVLMVGPPGTGKTLLAKAIAGEAKV--PF---FTISGSD------FVE-MF--VG------VGASRVRDMFEQAKKAAP 245 (644)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHcCC--CE---EEEehHH------hHH-hh--hc------ccHHHHHHHHHHHHhcCC
Confidence 45899999999999999999887653 22 2222221 111 00 01 011223334444444578
Q ss_pred EEEEEeCCCChh----------------hhhhhCCC---CC-CCCeEEEEEeCCcchhcc-cc---CCccceecCCCCHH
Q 010355 251 ILVILDDIWTNL----------------DLENVGIP---FG-VRGCRVLMTARSQDVLSS-KM---DCQNNFLIGVLNES 306 (512)
Q Consensus 251 ~LlVlDdv~~~~----------------~~~~l~~~---~~-~~gs~iivTtR~~~v~~~-~~---~~~~~~~l~~L~~~ 306 (512)
++|+||+++... .+..+... +. ..+..||.||........ .. .-...+.+...+..
T Consensus 246 ~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~ 325 (644)
T PRK10733 246 CIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVR 325 (644)
T ss_pred cEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhhcCHHHhCCcccceEEEcCCCCHH
Confidence 999999986431 11222111 11 345556667766543211 11 22357778888888
Q ss_pred HHHHHHHHHhCC
Q 010355 307 EARDLFKKLVGD 318 (512)
Q Consensus 307 ea~~Lf~~~~~~ 318 (512)
+-.+++..++..
T Consensus 326 ~R~~Il~~~~~~ 337 (644)
T PRK10733 326 GREQILKVHMRR 337 (644)
T ss_pred HHHHHHHHHhhc
Confidence 888888877753
No 188
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.25 E-value=0.0021 Score=70.17 Aligned_cols=102 Identities=17% Similarity=0.175 Sum_probs=58.5
Q ss_pred ccccchHHHHHHHHHhcC---------CCceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCCCHHHHHHH
Q 010355 150 AFESRMSTLNDVINALKN---------PDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQ 220 (512)
Q Consensus 150 ~~~gR~~~l~~l~~~L~~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~ 220 (512)
.++|.+..+..|...+.. .....+.++|++|+|||+||+.++.... . ..+.++++.......
T Consensus 459 ~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~--~---~~i~id~se~~~~~~---- 529 (758)
T PRK11034 459 LVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALG--I---ELLRFDMSEYMERHT---- 529 (758)
T ss_pred eEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHhC--C---CcEEeechhhccccc----
Confidence 467888888887777651 1245789999999999999999988763 1 233444443222111
Q ss_pred HHHHhCCCCCCCCchHHHHHHHHHHhCCCeEEEEEeCCCCh
Q 010355 221 IADKLGLKFYEESESGRARKLCERLKKEKKILVILDDIWTN 261 (512)
Q Consensus 221 i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~ 261 (512)
+..-+|.+..-.. ......+.+.+......+|+||++...
T Consensus 530 ~~~LiG~~~gyvg-~~~~g~L~~~v~~~p~sVlllDEieka 569 (758)
T PRK11034 530 VSRLIGAPPGYVG-FDQGGLLTDAVIKHPHAVLLLDEIEKA 569 (758)
T ss_pred HHHHcCCCCCccc-ccccchHHHHHHhCCCcEEEeccHhhh
Confidence 1122232211110 011123344444445679999999754
No 189
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.23 E-value=0.014 Score=59.72 Aligned_cols=59 Identities=29% Similarity=0.408 Sum_probs=40.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCC-CCCHHHHHHHHHHHhCCCC
Q 010355 169 DVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQ-RPDVKKIQGQIADKLGLKF 229 (512)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~-~~~~~~ll~~i~~~l~~~~ 229 (512)
...+|.++|.+|+||||++..++..+.... + .+..|++.. .+...+.++.++.+++.+.
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~g-~-kV~lV~~D~~R~aa~eQL~~la~~~gvp~ 153 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKKG-L-KVGLVAADTYRPAAYDQLKQLAEKIGVPF 153 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHcC-C-eEEEecCCCCCHHHHHHHHHHHHHcCCcE
Confidence 467999999999999999999998876432 2 344444432 1233555666777777653
No 190
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.23 E-value=0.0017 Score=64.66 Aligned_cols=88 Identities=19% Similarity=0.202 Sum_probs=55.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCC-CCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHhCC
Q 010355 170 VHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQ-RPDVKKIQGQIADKLGLKFYEESESGRARKLCERLKKE 248 (512)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~-~~~~~~ll~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 248 (512)
..+++++|+.|+||||++..++.....+.....+..++... .....+-++...+.++.+................+.
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~-- 214 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELR-- 214 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhc--
Confidence 47999999999999999999998764321123455555432 234566677777777776544332222333444443
Q ss_pred CeEEEEEeCCC
Q 010355 249 KKILVILDDIW 259 (512)
Q Consensus 249 k~~LlVlDdv~ 259 (512)
++-+|++|..-
T Consensus 215 ~~DlVLIDTaG 225 (374)
T PRK14722 215 NKHMVLIDTIG 225 (374)
T ss_pred CCCEEEEcCCC
Confidence 34567799884
No 191
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=97.21 E-value=0.0021 Score=62.26 Aligned_cols=88 Identities=22% Similarity=0.243 Sum_probs=51.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCC-CCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHhC
Q 010355 169 DVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQR-PDVKKIQGQIADKLGLKFYEESESGRARKLCERLKK 247 (512)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-~~~~~ll~~i~~~l~~~~~~~~~~~~~~~l~~~l~~ 247 (512)
..++++|+|++|+||||++..++.....+..-..+..|+.... ......+......++.+.........+......+.
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r~~a~eql~~~~~~~~~p~~~~~~~~~l~~~l~~~~- 271 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYRIGAVEQLKTYAKILGVPVKVARDPKELRKALDRLR- 271 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccchhHHHHHHHHHHHhCCceeccCCHHHHHHHHHHcc-
Confidence 3579999999999999999999887754311134555655432 22334444455556665443333333444444443
Q ss_pred CCeEEEEEeCC
Q 010355 248 EKKILVILDDI 258 (512)
Q Consensus 248 ~k~~LlVlDdv 258 (512)
..=+|++|..
T Consensus 272 -~~d~vliDt~ 281 (282)
T TIGR03499 272 -DKDLILIDTA 281 (282)
T ss_pred -CCCEEEEeCC
Confidence 2347777753
No 192
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=97.20 E-value=0.014 Score=53.62 Aligned_cols=129 Identities=20% Similarity=0.257 Sum_probs=73.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHhC
Q 010355 168 PDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIADKLGLKFYEESESGRARKLCERLKK 247 (512)
Q Consensus 168 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~i~~~l~~~~~~~~~~~~~~~l~~~l~~ 247 (512)
.+++-+.++|++|.|||-||+.+++.. .+.|+.+|.. ++.+..+ | .....+..++-..+.
T Consensus 179 aQPKGvlLygppgtGktLlaraVahht-------~c~firvsgs----elvqk~i---g------egsrmvrelfvmare 238 (404)
T KOG0728|consen 179 AQPKGVLLYGPPGTGKTLLARAVAHHT-------DCTFIRVSGS----ELVQKYI---G------EGSRMVRELFVMARE 238 (404)
T ss_pred CCCcceEEecCCCCchhHHHHHHHhhc-------ceEEEEechH----HHHHHHh---h------hhHHHHHHHHHHHHh
Confidence 467788999999999999999998754 3456777653 2222221 1 111223344433344
Q ss_pred CCeEEEEEeCCCChh--------------------hhhhhCCCCCCCCeEEEEEeCCcchhc----cccCCccceecCCC
Q 010355 248 EKKILVILDDIWTNL--------------------DLENVGIPFGVRGCRVLMTARSQDVLS----SKMDCQNNFLIGVL 303 (512)
Q Consensus 248 ~k~~LlVlDdv~~~~--------------------~~~~l~~~~~~~gs~iivTtR~~~v~~----~~~~~~~~~~l~~L 303 (512)
.-+.+|+.|.+.+.. -++++...-..++.+||..|..-.+.. +.......++.+|-
T Consensus 239 hapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatknikvimatnridild~allrpgridrkiefp~p 318 (404)
T KOG0728|consen 239 HAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDPALLRPGRIDRKIEFPPP 318 (404)
T ss_pred cCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccccceEEEEeccccccccHhhcCCCcccccccCCCC
Confidence 568889999885431 122221111156778888776555431 11122356777777
Q ss_pred CHHHHHHHHHHHh
Q 010355 304 NESEARDLFKKLV 316 (512)
Q Consensus 304 ~~~ea~~Lf~~~~ 316 (512)
+.+.-.++++-+.
T Consensus 319 ~e~ar~~ilkihs 331 (404)
T KOG0728|consen 319 NEEARLDILKIHS 331 (404)
T ss_pred CHHHHHHHHHHhh
Confidence 7666666665443
No 193
>PRK04132 replication factor C small subunit; Provisional
Probab=97.19 E-value=0.01 Score=65.18 Aligned_cols=158 Identities=9% Similarity=0.061 Sum_probs=93.7
Q ss_pred Ec--CCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHhCCCeEEE
Q 010355 176 YG--MAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIADKLGLKFYEESESGRARKLCERLKKEKKILV 253 (512)
Q Consensus 176 ~G--~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~Ll 253 (512)
.| |.++||||+|..+++..-....-..++-++++...+...+ ++++..+....+ +...+.-++
T Consensus 570 ~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rgid~I-R~iIk~~a~~~~--------------~~~~~~KVv 634 (846)
T PRK04132 570 GGNLPTVLHNTTAALALARELFGENWRHNFLELNASDERGINVI-REKVKEFARTKP--------------IGGASFKII 634 (846)
T ss_pred cCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCcccHHHH-HHHHHHHHhcCC--------------cCCCCCEEE
Confidence 37 8899999999999988632211234677788775555433 333332210000 011245799
Q ss_pred EEeCCCChh--hhhhhCCCCC--CCCeEEEEEeCCcc-hhccccCCccceecCCCCHHHHHHHHHHHhCCCCCCchhHHH
Q 010355 254 ILDDIWTNL--DLENVGIPFG--VRGCRVLMTARSQD-VLSSKMDCQNNFLIGVLNESEARDLFKKLVGDKIENNDLKSL 328 (512)
Q Consensus 254 VlDdv~~~~--~~~~l~~~~~--~~gs~iivTtR~~~-v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~ 328 (512)
|||+++... ....+.-... ...+++|++|.+.. +.....+....+.+.+++.++....+...+...... -..+.
T Consensus 635 IIDEaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Egi~-i~~e~ 713 (846)
T PRK04132 635 FLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLE-LTEEG 713 (846)
T ss_pred EEECcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcCCC-CCHHH
Confidence 999997653 3333311111 35677777666543 222223445789999999999988887766422111 11356
Q ss_pred HHHHHHHcCCChhHHHHHHHH
Q 010355 329 AMNIVKACRGLPIAIVTIARA 349 (512)
Q Consensus 329 ~~~I~~~~~GlPLai~~ia~~ 349 (512)
...|++.|+|.+..+..+-..
T Consensus 714 L~~Ia~~s~GDlR~AIn~Lq~ 734 (846)
T PRK04132 714 LQAILYIAEGDMRRAINILQA 734 (846)
T ss_pred HHHHHHHcCCCHHHHHHHHHH
Confidence 789999999988655444333
No 194
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=97.19 E-value=0.0007 Score=66.56 Aligned_cols=78 Identities=17% Similarity=0.254 Sum_probs=53.5
Q ss_pred ccccchHHHHHHHHHhc------CCCceEEEEEcCCCCcHHHHHHHHHHhhhhc-----CCCCeEEEEE----eCCCC--
Q 010355 150 AFESRMSTLNDVINALK------NPDVHMIGAYGMAGVGKTMLVKEVARQAKAD-----KLFDEVVYAE----VSQRP-- 212 (512)
Q Consensus 150 ~~~gR~~~l~~l~~~L~------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-----~~f~~~~wv~----~~~~~-- 212 (512)
.++|-++.+.+|++++. ....++++|+|++|+||||||..+++....- +.|...-|.. +...+
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~~~~~sp~~e~Pl~ 131 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKWNGEESPMHEDPLH 131 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEecCCCCCCccCCcc
Confidence 58899999999999886 2346899999999999999999999887641 2344455522 11111
Q ss_pred -CHHHHHHHHHHHhCC
Q 010355 213 -DVKKIQGQIADKLGL 227 (512)
Q Consensus 213 -~~~~ll~~i~~~l~~ 227 (512)
-+...-..+...++.
T Consensus 132 l~p~~~r~~~~~~~~~ 147 (361)
T smart00763 132 LFPDELREDLEDEYGI 147 (361)
T ss_pred cCCHHHHHHHHHHhCC
Confidence 234455555666664
No 195
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=97.17 E-value=0.0066 Score=60.09 Aligned_cols=136 Identities=12% Similarity=0.107 Sum_probs=77.3
Q ss_pred cccchHHHHHHHHHhc-CCCce-EEEEEcCCCCcHHHHHHHHHHhhhhcC-------------------CCCeEEEEEeC
Q 010355 151 FESRMSTLNDVINALK-NPDVH-MIGAYGMAGVGKTMLVKEVARQAKADK-------------------LFDEVVYAEVS 209 (512)
Q Consensus 151 ~~gR~~~l~~l~~~L~-~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~-------------------~f~~~~wv~~~ 209 (512)
++|-......+..+.. ..+.+ .+.++|++|+||||+|..+++...-.. ....+..++.+
T Consensus 3 ~~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~s 82 (325)
T COG0470 3 LVPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNPS 82 (325)
T ss_pred cccchhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEeccc
Confidence 4556666777777776 33344 499999999999999999998765221 11234444444
Q ss_pred CCCC---HHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHhCCCeEEEEEeCCCChh--hhhhhC--CCCCCCCeEEEEEe
Q 010355 210 QRPD---VKKIQGQIADKLGLKFYEESESGRARKLCERLKKEKKILVILDDIWTNL--DLENVG--IPFGVRGCRVLMTA 282 (512)
Q Consensus 210 ~~~~---~~~ll~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~--~~~~l~--~~~~~~gs~iivTt 282 (512)
.... ..+..+.+......... .++.-+++||++.... ....+. ...+...+++|++|
T Consensus 83 ~~~~~~i~~~~vr~~~~~~~~~~~----------------~~~~kviiidead~mt~~A~nallk~lEep~~~~~~il~~ 146 (325)
T COG0470 83 DLRKIDIIVEQVRELAEFLSESPL----------------EGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTRFILIT 146 (325)
T ss_pred ccCCCcchHHHHHHHHHHhccCCC----------------CCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeEEEEEc
Confidence 4333 23334444333322111 2467899999997542 222221 11225667788877
Q ss_pred CCcc-hhccccCCccceecCC
Q 010355 283 RSQD-VLSSKMDCQNNFLIGV 302 (512)
Q Consensus 283 R~~~-v~~~~~~~~~~~~l~~ 302 (512)
.... +..........+++.+
T Consensus 147 n~~~~il~tI~SRc~~i~f~~ 167 (325)
T COG0470 147 NDPSKILPTIRSRCQRIRFKP 167 (325)
T ss_pred CChhhccchhhhcceeeecCC
Confidence 7433 3222334445677776
No 196
>PRK04328 hypothetical protein; Provisional
Probab=97.17 E-value=0.0018 Score=61.55 Aligned_cols=53 Identities=13% Similarity=0.273 Sum_probs=36.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhC
Q 010355 169 DVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIADKLG 226 (512)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~i~~~l~ 226 (512)
.-.++.|.|.+|+|||+|+.+++..... .-..++|++... ++..+.+ .+++++
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~~~~--~ge~~lyis~ee--~~~~i~~-~~~~~g 74 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWNGLQ--MGEPGVYVALEE--HPVQVRR-NMRQFG 74 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHh--cCCcEEEEEeeC--CHHHHHH-HHHHcC
Confidence 3578999999999999999998776432 245678888765 3444433 334444
No 197
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=97.16 E-value=0.00057 Score=73.35 Aligned_cols=156 Identities=17% Similarity=0.218 Sum_probs=92.5
Q ss_pred CccccccchHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCC-----eEEEEEeCCCCCHHHHHHHH
Q 010355 147 GYEAFESRMSTLNDVINALKNPDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFD-----EVVYAEVSQRPDVKKIQGQI 221 (512)
Q Consensus 147 ~~~~~~gR~~~l~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~-----~~~wv~~~~~~~~~~ll~~i 221 (512)
...+++||+.++.++++.|....-.--.++|.+|+|||+++.-++.+.....-.. .++-++++
T Consensus 168 klDPvIGRd~EI~r~iqIL~RR~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD~g------------ 235 (786)
T COG0542 168 KLDPVIGRDEEIRRTIQILSRRTKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLDLG------------ 235 (786)
T ss_pred CCCCCcChHHHHHHHHHHHhccCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEecHH------------
Confidence 3567899999999999999844333345789999999999999998875432211 12212111
Q ss_pred HHHhCCCCCCCCchHHHHHHHHHHhCCCeEEEEEeCCCChh----------hhhhhCCCCCCCC-eE-EEEEeCCcchh-
Q 010355 222 ADKLGLKFYEESESGRARKLCERLKKEKKILVILDDIWTNL----------DLENVGIPFGVRG-CR-VLMTARSQDVL- 288 (512)
Q Consensus 222 ~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~----------~~~~l~~~~~~~g-s~-iivTtR~~~v~- 288 (512)
.-+........-.+.+..+.+.+...++++|++|.+.+.. +...+.-|.-..| -+ |-.||-++..-
T Consensus 236 -~LvAGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLARGeL~~IGATT~~EYRk~ 314 (786)
T COG0542 236 -SLVAGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALARGELRCIGATTLDEYRKY 314 (786)
T ss_pred -HHhccccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHhcCCeEEEEeccHHHHHHH
Confidence 1111111222334556667777765568999999986431 1112222222233 34 44555443320
Q ss_pred ----ccccCCccceecCCCCHHHHHHHHHHH
Q 010355 289 ----SSKMDCQNNFLIGVLNESEARDLFKKL 315 (512)
Q Consensus 289 ----~~~~~~~~~~~l~~L~~~ea~~Lf~~~ 315 (512)
.........+.+...+.+++..+++..
T Consensus 315 iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrGl 345 (786)
T COG0542 315 IEKDAALERRFQKVLVDEPSVEDTIAILRGL 345 (786)
T ss_pred hhhchHHHhcCceeeCCCCCHHHHHHHHHHH
Confidence 111234567888888999888888754
No 198
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.15 E-value=0.011 Score=62.04 Aligned_cols=151 Identities=18% Similarity=0.267 Sum_probs=85.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHhCCC
Q 010355 170 VHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIADKLGLKFYEESESGRARKLCERLKKEK 249 (512)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k 249 (512)
..-|.++|++|+|||.||.+++.....+ +|++..+ +++... +| ...+.+..++.+.+.-+
T Consensus 701 ~~giLLyGppGcGKT~la~a~a~~~~~~-------fisvKGP----ElL~Ky---IG------aSEq~vR~lF~rA~~a~ 760 (952)
T KOG0735|consen 701 RTGILLYGPPGCGKTLLASAIASNSNLR-------FISVKGP----ELLSKY---IG------ASEQNVRDLFERAQSAK 760 (952)
T ss_pred ccceEEECCCCCcHHHHHHHHHhhCCee-------EEEecCH----HHHHHH---hc------ccHHHHHHHHHHhhccC
Confidence 3468899999999999999998876533 5666553 233222 12 22345667777777789
Q ss_pred eEEEEEeCCCChh-------------hhhhhCCC----CCCCCeEEEE-EeCCcchhccccC---CccceecCCCCHHHH
Q 010355 250 KILVILDDIWTNL-------------DLENVGIP----FGVRGCRVLM-TARSQDVLSSKMD---CQNNFLIGVLNESEA 308 (512)
Q Consensus 250 ~~LlVlDdv~~~~-------------~~~~l~~~----~~~~gs~iiv-TtR~~~v~~~~~~---~~~~~~l~~L~~~ea 308 (512)
+|+|+||.+.+.. ..+++... -+-.|.-|+. |||..-+-..... -.+.+.-+.-+..+-
T Consensus 761 PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~Egl~GV~i~aaTsRpdliDpALLRpGRlD~~v~C~~P~~~eR 840 (952)
T KOG0735|consen 761 PCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAEGLDGVYILAATSRPDLIDPALLRPGRLDKLVYCPLPDEPER 840 (952)
T ss_pred CeEEEeccccccCcccCCCCCCchHHHHHHHHHhhccccccceEEEEEecCCccccCHhhcCCCccceeeeCCCCCcHHH
Confidence 9999999986431 12333221 1245666665 4554332111111 123344445566677
Q ss_pred HHHHHHHhCCCCCCchhHHHHHHHHHHcCCChhH
Q 010355 309 RDLFKKLVGDKIENNDLKSLAMNIVKACRGLPIA 342 (512)
Q Consensus 309 ~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~GlPLa 342 (512)
.++|........... .--.+.++.++.|..-|
T Consensus 841 l~il~~ls~s~~~~~--~vdl~~~a~~T~g~tgA 872 (952)
T KOG0735|consen 841 LEILQVLSNSLLKDT--DVDLECLAQKTDGFTGA 872 (952)
T ss_pred HHHHHHHhhccCCcc--ccchHHHhhhcCCCchh
Confidence 777776654211111 11245677777776543
No 199
>PRK09183 transposase/IS protein; Provisional
Probab=97.15 E-value=0.00093 Score=63.75 Aligned_cols=26 Identities=35% Similarity=0.344 Sum_probs=22.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhhh
Q 010355 170 VHMIGAYGMAGVGKTMLVKEVARQAK 195 (512)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 195 (512)
...+.|+|++|+|||+||..++....
T Consensus 102 ~~~v~l~Gp~GtGKThLa~al~~~a~ 127 (259)
T PRK09183 102 NENIVLLGPSGVGKTHLAIALGYEAV 127 (259)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHH
Confidence 35678999999999999999987754
No 200
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.15 E-value=0.0013 Score=68.95 Aligned_cols=75 Identities=23% Similarity=0.322 Sum_probs=55.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHH-h
Q 010355 168 PDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIADKLGLKFYEESESGRARKLCERL-K 246 (512)
Q Consensus 168 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~i~~~l~~~~~~~~~~~~~~~l~~~l-~ 246 (512)
+..+++.++|++|+||||||.-++++.. ..++=|++|...+...+-..|...+.... .+ .
T Consensus 324 P~kKilLL~GppGlGKTTLAHViAkqaG-----YsVvEINASDeRt~~~v~~kI~~avq~~s--------------~l~a 384 (877)
T KOG1969|consen 324 PPKKILLLCGPPGLGKTTLAHVIAKQAG-----YSVVEINASDERTAPMVKEKIENAVQNHS--------------VLDA 384 (877)
T ss_pred CccceEEeecCCCCChhHHHHHHHHhcC-----ceEEEecccccccHHHHHHHHHHHHhhcc--------------cccc
Confidence 3468999999999999999999998765 34777889988888777777765543221 11 1
Q ss_pred CCCeEEEEEeCCCCh
Q 010355 247 KEKKILVILDDIWTN 261 (512)
Q Consensus 247 ~~k~~LlVlDdv~~~ 261 (512)
..++..||+|.++-.
T Consensus 385 dsrP~CLViDEIDGa 399 (877)
T KOG1969|consen 385 DSRPVCLVIDEIDGA 399 (877)
T ss_pred CCCcceEEEecccCC
Confidence 257889999998643
No 201
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.14 E-value=0.0037 Score=57.10 Aligned_cols=52 Identities=13% Similarity=0.190 Sum_probs=38.8
Q ss_pred cCccccccchHHHHHHHHH----hcCCCceEEEEEcCCCCcHHHHHHHHHHhhhhc
Q 010355 146 KGYEAFESRMSTLNDVINA----LKNPDVHMIGAYGMAGVGKTMLVKEVARQAKAD 197 (512)
Q Consensus 146 ~~~~~~~gR~~~l~~l~~~----L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~ 197 (512)
.....++|-+...+.|++. +......-|.+||.-|+|||+|++++.+....+
T Consensus 57 i~L~~l~Gvd~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~ 112 (287)
T COG2607 57 IDLADLVGVDRQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLNEYADE 112 (287)
T ss_pred cCHHHHhCchHHHHHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHHHHHhc
Confidence 3445577877777766653 334455678999999999999999999987743
No 202
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=97.14 E-value=0.0029 Score=59.23 Aligned_cols=53 Identities=21% Similarity=0.190 Sum_probs=35.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhCC
Q 010355 170 VHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIADKLGL 227 (512)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~i~~~l~~ 227 (512)
..++.|.|.+|+|||||+.+++.....+ -..++|++.. .+..++++.+ .+++.
T Consensus 24 g~~~~i~G~~G~GKTtl~~~~~~~~~~~--g~~~~yi~~e--~~~~~~~~~~-~~~g~ 76 (230)
T PRK08533 24 GSLILIEGDESTGKSILSQRLAYGFLQN--GYSVSYVSTQ--LTTTEFIKQM-MSLGY 76 (230)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhC--CCcEEEEeCC--CCHHHHHHHH-HHhCC
Confidence 4589999999999999987776655322 2345666633 3556666666 44443
No 203
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=97.13 E-value=0.0044 Score=65.27 Aligned_cols=130 Identities=20% Similarity=0.279 Sum_probs=75.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHhCC
Q 010355 169 DVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIADKLGLKFYEESESGRARKLCERLKKE 248 (512)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 248 (512)
..+.+.++|++|.|||.||+++++.... +| +.+... .++.. .+ ......+..++..-+..
T Consensus 275 ~~~giLl~GpPGtGKT~lAkava~~~~~--~f-----i~v~~~----~l~sk---~v------Gesek~ir~~F~~A~~~ 334 (494)
T COG0464 275 PPKGVLLYGPPGTGKTLLAKAVALESRS--RF-----ISVKGS----ELLSK---WV------GESEKNIRELFEKARKL 334 (494)
T ss_pred CCCeeEEECCCCCCHHHHHHHHHhhCCC--eE-----EEeeCH----HHhcc---cc------chHHHHHHHHHHHHHcC
Confidence 4568999999999999999999996552 23 222221 11110 00 11122344455555556
Q ss_pred CeEEEEEeCCCChhh-------------hhhhCCCC----CCCCeEEEEEeCCcchhc----cccCCccceecCCCCHHH
Q 010355 249 KKILVILDDIWTNLD-------------LENVGIPF----GVRGCRVLMTARSQDVLS----SKMDCQNNFLIGVLNESE 307 (512)
Q Consensus 249 k~~LlVlDdv~~~~~-------------~~~l~~~~----~~~gs~iivTtR~~~v~~----~~~~~~~~~~l~~L~~~e 307 (512)
.+++|++|.+..... ...+.... ...+..||-||....... +...-...+.+.+-+..+
T Consensus 335 ~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~ 414 (494)
T COG0464 335 APSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLEE 414 (494)
T ss_pred CCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEecCCCccccCHhhcccCccceEeecCCCCHHH
Confidence 899999999854311 12221111 134444555555443321 111224588889999999
Q ss_pred HHHHHHHHhCC
Q 010355 308 ARDLFKKLVGD 318 (512)
Q Consensus 308 a~~Lf~~~~~~ 318 (512)
..+.|..+...
T Consensus 415 r~~i~~~~~~~ 425 (494)
T COG0464 415 RLEIFKIHLRD 425 (494)
T ss_pred HHHHHHHHhcc
Confidence 99999998863
No 204
>PTZ00494 tuzin-like protein; Provisional
Probab=97.13 E-value=0.055 Score=54.25 Aligned_cols=165 Identities=10% Similarity=0.090 Sum_probs=98.6
Q ss_pred ccccCccccccchHHHHHHHHH---hcCCCceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCCCHHHHHH
Q 010355 143 TSIKGYEAFESRMSTLNDVINA---LKNPDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQG 219 (512)
Q Consensus 143 ~~~~~~~~~~gR~~~l~~l~~~---L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ll~ 219 (512)
..+.....++.|+.+-..+.+. +....++++++.|.-|.||++|.+........ ..++|.+... ++-++
T Consensus 365 ~a~a~~~~~V~R~~eE~~vRqvL~qld~aHPRIvV~TG~~GcGKSslcRsAvrkE~~-----paV~VDVRg~---EDtLr 436 (664)
T PTZ00494 365 LAAAAEAFEVRREDEEALVRSVLTQMAPSHPRIVALAGGSGGGRCVPCRRAVRVEGV-----ALVHVDVGGT---EDTLR 436 (664)
T ss_pred ccccccccccchhhHHHHHHHHHhhccCCCCcEEEEecCCCCCchHHHHHHHHHcCC-----CeEEEEecCC---cchHH
Confidence 3445667788998765544444 44668899999999999999999988776542 3567888765 45678
Q ss_pred HHHHHhCCCCCCCCchHHHHHHHHHH------hCCCeEEEEEe--CCCChh-hhhhh-CCCCCCCCeEEEEEeCCcchh-
Q 010355 220 QIADKLGLKFYEESESGRARKLCERL------KKEKKILVILD--DIWTNL-DLENV-GIPFGVRGCRVLMTARSQDVL- 288 (512)
Q Consensus 220 ~i~~~l~~~~~~~~~~~~~~~l~~~l------~~~k~~LlVlD--dv~~~~-~~~~l-~~~~~~~gs~iivTtR~~~v~- 288 (512)
.+.+.||.+....-. ..+..+-+.. .+++.-+||+= .-.+.. .++.. .+.....-|+|++---.+.+.
T Consensus 437 sVVKALgV~nve~CG-DlLdFI~ea~~~A~~~~~g~~P~lVlkLREGssL~RVYnE~vaLacDrRlCHvv~EVplESLT~ 515 (664)
T PTZ00494 437 SVVRALGVSNVEVCG-DLLGFVEEAMRGATVKASDGVPFLVMRLREGSDLGRVYGEVVSLVSDCQACHIVLAVPMKALTP 515 (664)
T ss_pred HHHHHhCCCChhhhc-cHHHHHHHHHHHHHHhcCCCCCEEEEEeccCCcHHHHHHHHHHHHccchhheeeeechHhhhch
Confidence 888999887543211 1122222211 13444455543 222211 11111 122123446777644333221
Q ss_pred -ccccCCccceecCCCCHHHHHHHHHHHh
Q 010355 289 -SSKMDCQNNFLIGVLNESEARDLFKKLV 316 (512)
Q Consensus 289 -~~~~~~~~~~~l~~L~~~ea~~Lf~~~~ 316 (512)
....+....|.+++|+..+|.++..+.+
T Consensus 516 ~n~~LPRLDFy~VPnFSr~QAf~YtqH~l 544 (664)
T PTZ00494 516 LNVSSRRLDFYCIPPFSRRQAFAYAEHTL 544 (664)
T ss_pred hhccCccceeEecCCcCHHHHHHHHhccc
Confidence 2234555789999999999999887765
No 205
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=97.12 E-value=0.0091 Score=58.86 Aligned_cols=152 Identities=13% Similarity=0.118 Sum_probs=79.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhhhcC---------------------CCCeEEEEEeCCCCCHHHHHHHHHHHhCC
Q 010355 169 DVHMIGAYGMAGVGKTMLVKEVARQAKADK---------------------LFDEVVYAEVSQRPDVKKIQGQIADKLGL 227 (512)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~---------------------~f~~~~wv~~~~~~~~~~ll~~i~~~l~~ 227 (512)
-.+.+.++|+.|+|||++|..++...--.. |.+ .+++........ -|
T Consensus 20 ~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD-~~~~~p~~~~~~----------~g- 87 (325)
T PRK08699 20 RPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPD-FYEITPLSDEPE----------NG- 87 (325)
T ss_pred cceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCC-EEEEeccccccc----------cc-
Confidence 346788999999999999999988753100 111 112211000000 00
Q ss_pred CCCCCCchHHHHHHHHHHh----CCCeEEEEEeCCCCh--hh----hhhhCCCCCCCCeEEEEEeCCcc-hhccccCCcc
Q 010355 228 KFYEESESGRARKLCERLK----KEKKILVILDDIWTN--LD----LENVGIPFGVRGCRVLMTARSQD-VLSSKMDCQN 296 (512)
Q Consensus 228 ~~~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~--~~----~~~l~~~~~~~gs~iivTtR~~~-v~~~~~~~~~ 296 (512)
.....-..+.+..+.+.+. .+++-++|+|.+... .. +..+..| ..++.+|++|.+.. +.........
T Consensus 88 ~~~~~I~id~iR~l~~~~~~~p~~~~~kV~iiEp~~~Ld~~a~naLLk~LEep--~~~~~~Ilvth~~~~ll~ti~SRc~ 165 (325)
T PRK08699 88 RKLLQIKIDAVREIIDNVYLTSVRGGLRVILIHPAESMNLQAANSLLKVLEEP--PPQVVFLLVSHAADKVLPTIKSRCR 165 (325)
T ss_pred ccCCCcCHHHHHHHHHHHhhCcccCCceEEEEechhhCCHHHHHHHHHHHHhC--cCCCEEEEEeCChHhChHHHHHHhh
Confidence 0000011223333433332 134445566887643 11 2223223 23566777777654 3333334457
Q ss_pred ceecCCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChhHH
Q 010355 297 NFLIGVLNESEARDLFKKLVGDKIENNDLKSLAMNIVKACRGLPIAI 343 (512)
Q Consensus 297 ~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~GlPLai 343 (512)
.+.+.+++.+++.+.+... +. ... ...+..++|.|+.+
T Consensus 166 ~~~~~~~~~~~~~~~L~~~-~~---~~~-----~~~l~~~~g~p~~~ 203 (325)
T PRK08699 166 KMVLPAPSHEEALAYLRER-GV---AEP-----EERLAFHSGAPLFD 203 (325)
T ss_pred hhcCCCCCHHHHHHHHHhc-CC---CcH-----HHHHHHhCCChhhh
Confidence 8999999999999888654 11 111 11235789999653
No 206
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=97.11 E-value=0.0021 Score=62.86 Aligned_cols=89 Identities=20% Similarity=0.266 Sum_probs=57.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhhhhc----CCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCC----------Cch
Q 010355 170 VHMIGAYGMAGVGKTMLVKEVARQAKAD----KLFDEVVYAEVSQRPDVKKIQGQIADKLGLKFYEE----------SES 235 (512)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~----~~f~~~~wv~~~~~~~~~~ll~~i~~~l~~~~~~~----------~~~ 235 (512)
-.++-|+|++|+|||+|+.+++-..... ..-..++||+....+++..+. +++..++...... +..
T Consensus 96 G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~-~~a~~~g~d~~~~l~~i~~~~~~~~e 174 (313)
T TIGR02238 96 MSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIR-AIAERFGVDPDAVLDNILYARAYTSE 174 (313)
T ss_pred CeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHH-HHHHHcCCChHHhcCcEEEecCCCHH
Confidence 4788899999999999999887543211 112478999999888888765 4566666543210 111
Q ss_pred ---HHHHHHHHHHhCCCeEEEEEeCCC
Q 010355 236 ---GRARKLCERLKKEKKILVILDDIW 259 (512)
Q Consensus 236 ---~~~~~l~~~l~~~k~~LlVlDdv~ 259 (512)
..+..+...+...+.-|||+|.+.
T Consensus 175 ~~~~~l~~l~~~i~~~~~~LvVIDSis 201 (313)
T TIGR02238 175 HQMELLDYLAAKFSEEPFRLLIVDSIM 201 (313)
T ss_pred HHHHHHHHHHHHhhccCCCEEEEEcch
Confidence 122333334444456689999874
No 207
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=97.11 E-value=0.0036 Score=58.55 Aligned_cols=49 Identities=24% Similarity=0.315 Sum_probs=36.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhhhhcC----CCCeEEEEEeCCCCCHHHHH
Q 010355 170 VHMIGAYGMAGVGKTMLVKEVARQAKADK----LFDEVVYAEVSQRPDVKKIQ 218 (512)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~f~~~~wv~~~~~~~~~~ll 218 (512)
-.++.|+|.+|+|||+|+.+++....... .-..++|++....+....+.
T Consensus 19 g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~~~~~~rl~ 71 (226)
T cd01393 19 GRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGAFRPERLV 71 (226)
T ss_pred CcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCCCCCHHHHH
Confidence 47899999999999999999987654221 01568899887776665443
No 208
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=97.10 E-value=0.0022 Score=63.12 Aligned_cols=84 Identities=27% Similarity=0.354 Sum_probs=58.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCC--CchHHHHHHHHHHhC
Q 010355 170 VHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIADKLGLKFYEE--SESGRARKLCERLKK 247 (512)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~i~~~l~~~~~~~--~~~~~~~~l~~~l~~ 247 (512)
-.+|.|-|-+|||||||..+++.+...+. .++||+-... +.++ +--+..|+.+.... -....+..+...+.+
T Consensus 93 Gs~iLIgGdPGIGKSTLLLQva~~lA~~~---~vLYVsGEES--~~Qi-klRA~RL~~~~~~l~l~aEt~~e~I~~~l~~ 166 (456)
T COG1066 93 GSVILIGGDPGIGKSTLLLQVAARLAKRG---KVLYVSGEES--LQQI-KLRADRLGLPTNNLYLLAETNLEDIIAELEQ 166 (456)
T ss_pred ccEEEEccCCCCCHHHHHHHHHHHHHhcC---cEEEEeCCcC--HHHH-HHHHHHhCCCccceEEehhcCHHHHHHHHHh
Confidence 47899999999999999999999987542 6777765443 3222 22356677554321 122345667777777
Q ss_pred CCeEEEEEeCCC
Q 010355 248 EKKILVILDDIW 259 (512)
Q Consensus 248 ~k~~LlVlDdv~ 259 (512)
.++-|+|+|-+.
T Consensus 167 ~~p~lvVIDSIQ 178 (456)
T COG1066 167 EKPDLVVIDSIQ 178 (456)
T ss_pred cCCCEEEEeccc
Confidence 789999999984
No 209
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.09 E-value=0.0061 Score=63.85 Aligned_cols=158 Identities=19% Similarity=0.166 Sum_probs=87.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCC--CHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHh
Q 010355 169 DVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRP--DVKKIQGQIADKLGLKFYEESESGRARKLCERLK 246 (512)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~--~~~~ll~~i~~~l~~~~~~~~~~~~~~~l~~~l~ 246 (512)
..+.|.|.|+.|+|||+||+++++... +.....+.+++++.-. .+..+++-+-. .....+.
T Consensus 430 ~~~~Ill~G~~GsGKT~L~kal~~~~~-k~~~~hv~~v~Cs~l~~~~~e~iQk~l~~----------------vfse~~~ 492 (952)
T KOG0735|consen 430 RHGNILLNGPKGSGKTNLVKALFDYYS-KDLIAHVEIVSCSTLDGSSLEKIQKFLNN----------------VFSEALW 492 (952)
T ss_pred ccccEEEeCCCCCCHhHHHHHHHHHhc-cccceEEEEEechhccchhHHHHHHHHHH----------------HHHHHHh
Confidence 346789999999999999999999887 3455566677766432 23333322211 1112222
Q ss_pred CCCeEEEEEeCCCChh--------h-----------hhhhCCCCCCCCe--EEEEEeCCcchhc----cccCCccceecC
Q 010355 247 KEKKILVILDDIWTNL--------D-----------LENVGIPFGVRGC--RVLMTARSQDVLS----SKMDCQNNFLIG 301 (512)
Q Consensus 247 ~~k~~LlVlDdv~~~~--------~-----------~~~l~~~~~~~gs--~iivTtR~~~v~~----~~~~~~~~~~l~ 301 (512)
..+-+|||||+.... + +.++..-+...+. ++|.|.....-.. ...--..++.|.
T Consensus 493 -~~PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~L~ 571 (952)
T KOG0735|consen 493 -YAPSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNPLLVSPLLFQIVIALP 571 (952)
T ss_pred -hCCcEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcChhhcCccceEEEEecC
Confidence 368999999985321 1 1111111122233 4555554433221 111223577888
Q ss_pred CCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCC-hhHHHH
Q 010355 302 VLNESEARDLFKKLVGDKIENNDLKSLAMNIVKACRGL-PIAIVT 345 (512)
Q Consensus 302 ~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~Gl-PLai~~ 345 (512)
++...+-.++++..+.... .........-+..+|+|. |.-+.+
T Consensus 572 ap~~~~R~~IL~~~~s~~~-~~~~~~dLd~ls~~TEGy~~~DL~i 615 (952)
T KOG0735|consen 572 APAVTRRKEILTTIFSKNL-SDITMDDLDFLSVKTEGYLATDLVI 615 (952)
T ss_pred CcchhHHHHHHHHHHHhhh-hhhhhHHHHHHHHhcCCccchhHHH
Confidence 8888888888877664222 111223344477888775 443333
No 210
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=97.08 E-value=0.0028 Score=56.81 Aligned_cols=74 Identities=26% Similarity=0.329 Sum_probs=45.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHhCC
Q 010355 169 DVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIADKLGLKFYEESESGRARKLCERLKKE 248 (512)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 248 (512)
...-+.|+|.+|+|||.||..+++....+ -..+.|++ ..+++..|-..- ... ....+.+.+.
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ai~~~~~~~--g~~v~f~~------~~~L~~~l~~~~----~~~----~~~~~~~~l~-- 107 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVAIANEAIRK--GYSVLFIT------ASDLLDELKQSR----SDG----SYEELLKRLK-- 107 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHHHHHHHHHT--T--EEEEE------HHHHHHHHHCCH----CCT----THCHHHHHHH--
T ss_pred cCeEEEEEhhHhHHHHHHHHHHHHHhccC--CcceeEee------cCceeccccccc----ccc----chhhhcCccc--
Confidence 34679999999999999999999876642 33456664 345555543221 111 1223455565
Q ss_pred CeEEEEEeCCCC
Q 010355 249 KKILVILDDIWT 260 (512)
Q Consensus 249 k~~LlVlDdv~~ 260 (512)
+.=||||||+-.
T Consensus 108 ~~dlLilDDlG~ 119 (178)
T PF01695_consen 108 RVDLLILDDLGY 119 (178)
T ss_dssp TSSCEEEETCTS
T ss_pred cccEecccccce
Confidence 346888999953
No 211
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=97.08 E-value=0.0034 Score=62.06 Aligned_cols=89 Identities=19% Similarity=0.219 Sum_probs=56.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhhhhc----CCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCC----------CCch
Q 010355 170 VHMIGAYGMAGVGKTMLVKEVARQAKAD----KLFDEVVYAEVSQRPDVKKIQGQIADKLGLKFYE----------ESES 235 (512)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~----~~f~~~~wv~~~~~~~~~~ll~~i~~~l~~~~~~----------~~~~ 235 (512)
..++-|+|.+|+|||+|+.+++-..... ..-..++||+....+++..+.. +++.++..... .+..
T Consensus 126 G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~-ia~~~g~d~~~~l~~I~~~~~~~~e 204 (344)
T PLN03187 126 RCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVP-IAERFGMDADAVLDNIIYARAYTYE 204 (344)
T ss_pred CeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHH-HHHHcCCChhhhcCeEEEecCCCHH
Confidence 4788899999999999999987543211 1124789999999898887654 56666654321 0111
Q ss_pred H---HHHHHHHHHhCCCeEEEEEeCCC
Q 010355 236 G---RARKLCERLKKEKKILVILDDIW 259 (512)
Q Consensus 236 ~---~~~~l~~~l~~~k~~LlVlDdv~ 259 (512)
. .+..+...+...+.-|||+|.+-
T Consensus 205 ~~~~~l~~l~~~i~~~~~~LvVIDSit 231 (344)
T PLN03187 205 HQYNLLLGLAAKMAEEPFRLLIVDSVI 231 (344)
T ss_pred HHHHHHHHHHHHHHhcCCCEEEEeCcH
Confidence 1 12223333334456688999874
No 212
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.06 E-value=0.003 Score=70.46 Aligned_cols=105 Identities=21% Similarity=0.242 Sum_probs=59.1
Q ss_pred cccccchHHHHHHHHHhc-------CC--CceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCCCHHHHHH
Q 010355 149 EAFESRMSTLNDVINALK-------NP--DVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQG 219 (512)
Q Consensus 149 ~~~~gR~~~l~~l~~~L~-------~~--~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ll~ 219 (512)
..++|.+..+..|...+. .. ...++.++|+.|+|||+||+.+++..-.. -...+-++.+.-.....+
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~--~~~~~~~d~s~~~~~~~~-- 584 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFGS--EDAMIRLDMSEYMEKHTV-- 584 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCC--ccceEEEEchhccccccH--
Confidence 456788888888877664 11 13467899999999999999999875311 123444454432221111
Q ss_pred HHHHHhCCCCCCCCchHHHHHHHHHHhCCCeEEEEEeCCCC
Q 010355 220 QIADKLGLKFYEESESGRARKLCERLKKEKKILVILDDIWT 260 (512)
Q Consensus 220 ~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~ 260 (512)
..-+|.++.-. .......+.+.++.....+|+||++..
T Consensus 585 --~~l~g~~~gyv-g~~~~~~l~~~~~~~p~~VvllDeiek 622 (821)
T CHL00095 585 --SKLIGSPPGYV-GYNEGGQLTEAVRKKPYTVVLFDEIEK 622 (821)
T ss_pred --HHhcCCCCccc-CcCccchHHHHHHhCCCeEEEECChhh
Confidence 11122221100 011122345555544446999999964
No 213
>PHA02244 ATPase-like protein
Probab=97.06 E-value=0.0075 Score=59.55 Aligned_cols=35 Identities=20% Similarity=0.278 Sum_probs=26.1
Q ss_pred HHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHhhh
Q 010355 159 NDVINALKNPDVHMIGAYGMAGVGKTMLVKEVARQAK 195 (512)
Q Consensus 159 ~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 195 (512)
..+..++..+ ..|.|+|++|+|||+||+++++...
T Consensus 110 ~ri~r~l~~~--~PVLL~GppGtGKTtLA~aLA~~lg 144 (383)
T PHA02244 110 ADIAKIVNAN--IPVFLKGGAGSGKNHIAEQIAEALD 144 (383)
T ss_pred HHHHHHHhcC--CCEEEECCCCCCHHHHHHHHHHHhC
Confidence 3444555433 3467899999999999999998754
No 214
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.04 E-value=0.0027 Score=59.36 Aligned_cols=44 Identities=23% Similarity=0.317 Sum_probs=34.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCCCHHH
Q 010355 170 VHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKK 216 (512)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 216 (512)
-.++.|+|.+|+|||+||.+++..... ....++|++.. .++...
T Consensus 23 g~i~~i~G~~GsGKT~l~~~la~~~~~--~~~~v~yi~~e-~~~~~r 66 (225)
T PRK09361 23 GTITQIYGPPGSGKTNICLQLAVEAAK--NGKKVIYIDTE-GLSPER 66 (225)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH--CCCeEEEEECC-CCCHHH
Confidence 479999999999999999999887653 24678899887 455444
No 215
>PRK06696 uridine kinase; Validated
Probab=97.04 E-value=0.00097 Score=62.26 Aligned_cols=44 Identities=20% Similarity=0.299 Sum_probs=35.6
Q ss_pred cchHHHHHHHHHhc---CCCceEEEEEcCCCCcHHHHHHHHHHhhhh
Q 010355 153 SRMSTLNDVINALK---NPDVHMIGAYGMAGVGKTMLVKEVARQAKA 196 (512)
Q Consensus 153 gR~~~l~~l~~~L~---~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 196 (512)
.|.+.+.+|.+.+. ..+..+|+|.|.+|+||||||+.++.....
T Consensus 2 ~~~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~ 48 (223)
T PRK06696 2 SRKQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAEEIKK 48 (223)
T ss_pred cHHHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 35666777777664 456789999999999999999999988753
No 216
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.02 E-value=0.026 Score=52.82 Aligned_cols=206 Identities=12% Similarity=0.157 Sum_probs=113.9
Q ss_pred ccccccchHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHhhhh----cCCCCeEEEEEeCCC----------C-
Q 010355 148 YEAFESRMSTLNDVINALKNPDVHMIGAYGMAGVGKTMLVKEVARQAKA----DKLFDEVVYAEVSQR----------P- 212 (512)
Q Consensus 148 ~~~~~gR~~~l~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~----~~~f~~~~wv~~~~~----------~- 212 (512)
...+.++.+.-..+......+..+-+.++|++|.||-|.+..+.+..-. +-.-....|.+.+.. .
T Consensus 12 l~~l~~~~e~~~~Lksl~~~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS~yH 91 (351)
T KOG2035|consen 12 LDELIYHEELANLLKSLSSTGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSSNYH 91 (351)
T ss_pred hhhcccHHHHHHHHHHhcccCCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecccce
Confidence 3345667776677776666677899999999999999998888776421 111223344433322 1
Q ss_pred ----------CHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHhCCCeE-EEEEeCCCCh--hhhhhhCCCCC--CCCeE
Q 010355 213 ----------DVKKIQGQIADKLGLKFYEESESGRARKLCERLKKEKKI-LVILDDIWTN--LDLENVGIPFG--VRGCR 277 (512)
Q Consensus 213 ----------~~~~ll~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~-LlVlDdv~~~--~~~~~l~~~~~--~~gs~ 277 (512)
.-+-+.+.|++.++...+-. ....++| ++|+-.++.. +.-..++.... ...+|
T Consensus 92 lEitPSDaG~~DRvViQellKevAQt~qie------------~~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkYs~~~R 159 (351)
T KOG2035|consen 92 LEITPSDAGNYDRVVIQELLKEVAQTQQIE------------TQGQRPFKVVVINEADELTRDAQHALRRTMEKYSSNCR 159 (351)
T ss_pred EEeChhhcCcccHHHHHHHHHHHHhhcchh------------hccccceEEEEEechHhhhHHHHHHHHHHHHHHhcCce
Confidence 11233344444332211100 0112445 4444444322 11112211101 45678
Q ss_pred EEEEeCCcchh-ccccCCccceecCCCCHHHHHHHHHHHhCCCC-CCchhHHHHHHHHHHcCCChhHHHHHHHHhc--cC
Q 010355 278 VLMTARSQDVL-SSKMDCQNNFLIGVLNESEARDLFKKLVGDKI-ENNDLKSLAMNIVKACRGLPIAIVTIARALR--NK 353 (512)
Q Consensus 278 iivTtR~~~v~-~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~-~~~~~~~~~~~I~~~~~GlPLai~~ia~~L~--~~ 353 (512)
+|+...+.... .......-.+++...++++....+++.+.... ..| .+++.+|+++++|+-.-..++-..++ +.
T Consensus 160 lIl~cns~SriIepIrSRCl~iRvpaps~eeI~~vl~~v~~kE~l~lp--~~~l~rIa~kS~~nLRrAllmlE~~~~~n~ 237 (351)
T KOG2035|consen 160 LILVCNSTSRIIEPIRSRCLFIRVPAPSDEEITSVLSKVLKKEGLQLP--KELLKRIAEKSNRNLRRALLMLEAVRVNNE 237 (351)
T ss_pred EEEEecCcccchhHHhhheeEEeCCCCCHHHHHHHHHHHHHHhcccCc--HHHHHHHHHHhcccHHHHHHHHHHHHhccc
Confidence 77755433211 11123335788999999999999998875322 222 57899999999998654444444443 11
Q ss_pred ---------CHHHHHHHHHHhcC
Q 010355 354 ---------NTFEWKSALRELTR 367 (512)
Q Consensus 354 ---------~~~~w~~~l~~l~~ 367 (512)
+..+|.-++.++..
T Consensus 238 ~~~a~~~~i~~~dWe~~i~e~a~ 260 (351)
T KOG2035|consen 238 PFTANSQVIPKPDWEIYIQEIAR 260 (351)
T ss_pred cccccCCCCCCccHHHHHHHHHH
Confidence 45579887776543
No 217
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=97.02 E-value=0.0041 Score=59.21 Aligned_cols=89 Identities=27% Similarity=0.311 Sum_probs=55.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhhhhc----CCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCC----------CCch
Q 010355 170 VHMIGAYGMAGVGKTMLVKEVARQAKAD----KLFDEVVYAEVSQRPDVKKIQGQIADKLGLKFYE----------ESES 235 (512)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~----~~f~~~~wv~~~~~~~~~~ll~~i~~~l~~~~~~----------~~~~ 235 (512)
..+.=|+|.+|+|||.|+.+++-..... ..-..++|++-...++...+. +|++..+..... .+..
T Consensus 38 g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~-~i~~~~~~~~~~~l~~I~v~~~~~~~ 116 (256)
T PF08423_consen 38 GSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQ-QIAERFGLDPEEILDNIFVIRVFDLE 116 (256)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHH-HHHHHTTS-HHHHHHTEEEEE-SSHH
T ss_pred CcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHH-HHhhccccccchhhhceeeeecCCHH
Confidence 3688899999999999999887654321 123469999999989887765 566665433110 0111
Q ss_pred ---HHHHHHHHHHhCCCeEEEEEeCCC
Q 010355 236 ---GRARKLCERLKKEKKILVILDDIW 259 (512)
Q Consensus 236 ---~~~~~l~~~l~~~k~~LlVlDdv~ 259 (512)
..+..+...+...+--|||+|.+-
T Consensus 117 ~l~~~L~~l~~~l~~~~ikLIVIDSIa 143 (256)
T PF08423_consen 117 ELLELLEQLPKLLSESKIKLIVIDSIA 143 (256)
T ss_dssp HHHHHHHHHHHHHHHSCEEEEEEETSS
T ss_pred HHHHHHHHHHhhccccceEEEEecchH
Confidence 122233333434566688899874
No 218
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.00 E-value=0.0072 Score=60.11 Aligned_cols=89 Identities=16% Similarity=0.227 Sum_probs=50.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCC-CCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHhC
Q 010355 169 DVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQR-PDVKKIQGQIADKLGLKFYEESESGRARKLCERLKK 247 (512)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-~~~~~ll~~i~~~l~~~~~~~~~~~~~~~l~~~l~~ 247 (512)
+.++|+|+|++|+||||++..++.....+ -..+..++.... ....+-++..+..++.+.........+......+..
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~~--GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~ 317 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFHGK--KKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKE 317 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHHHc--CCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHh
Confidence 45799999999999999999998876532 123445554322 223333444455566554433333333344444432
Q ss_pred -CCeEEEEEeCCC
Q 010355 248 -EKKILVILDDIW 259 (512)
Q Consensus 248 -~k~~LlVlDdv~ 259 (512)
.+.=+|++|-.-
T Consensus 318 ~~~~DvVLIDTaG 330 (436)
T PRK11889 318 EARVDYILIDTAG 330 (436)
T ss_pred ccCCCEEEEeCcc
Confidence 123477788763
No 219
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.98 E-value=0.029 Score=59.53 Aligned_cols=95 Identities=17% Similarity=0.321 Sum_probs=64.7
Q ss_pred CccccccchHHHHHHHHHhc---------CC---CceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCCCH
Q 010355 147 GYEAFESRMSTLNDVINALK---------NP---DVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDV 214 (512)
Q Consensus 147 ~~~~~~gR~~~l~~l~~~L~---------~~---~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~ 214 (512)
.+..+-|-++....|.+.+. .. ...-|.++|++|.|||-||++|+..... -|++|..+
T Consensus 670 ~WdDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEcsL-------~FlSVKGP--- 739 (953)
T KOG0736|consen 670 SWDDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATECSL-------NFLSVKGP--- 739 (953)
T ss_pred chhcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhcee-------eEEeecCH---
Confidence 35556677777777776554 12 2457889999999999999999977653 25666543
Q ss_pred HHHHHHHHHHhCCCCCCCCchHHHHHHHHHHhCCCeEEEEEeCCCCh
Q 010355 215 KKIQGQIADKLGLKFYEESESGRARKLCERLKKEKKILVILDDIWTN 261 (512)
Q Consensus 215 ~~ll~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~ 261 (512)
+++..- + ......+..++++-++.++|+|+||.+++.
T Consensus 740 -ELLNMY---V------GqSE~NVR~VFerAR~A~PCVIFFDELDSl 776 (953)
T KOG0736|consen 740 -ELLNMY---V------GQSEENVREVFERARSAAPCVIFFDELDSL 776 (953)
T ss_pred -HHHHHH---h------cchHHHHHHHHHHhhccCCeEEEecccccc
Confidence 222211 1 123345778888888889999999998654
No 220
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.98 E-value=0.0022 Score=57.39 Aligned_cols=37 Identities=30% Similarity=0.481 Sum_probs=29.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEE
Q 010355 169 DVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAE 207 (512)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~ 207 (512)
...+|.|.|++|+||||+|+.++..... .+..++++.
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~l~~--~~~~~~~~~ 42 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYERLKL--KYSNVIYLD 42 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHH--cCCcEEEEe
Confidence 4468999999999999999999998863 355555553
No 221
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.95 E-value=0.057 Score=54.90 Aligned_cols=28 Identities=25% Similarity=0.297 Sum_probs=24.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhhh
Q 010355 169 DVHMIGAYGMAGVGKTMLVKEVARQAKA 196 (512)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 196 (512)
...+|.++|++|+||||++..++.....
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l~~ 126 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYYQR 126 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4689999999999999999999887653
No 222
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=96.91 E-value=0.0041 Score=62.39 Aligned_cols=85 Identities=25% Similarity=0.293 Sum_probs=54.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCC--CchHHHHHHHHHHhC
Q 010355 170 VHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIADKLGLKFYEE--SESGRARKLCERLKK 247 (512)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~i~~~l~~~~~~~--~~~~~~~~l~~~l~~ 247 (512)
-.++.|.|.+|+|||||+.+++...... ...++|++... +..++. .-+..++...... .....+..+.+.+..
T Consensus 82 GslvLI~G~pG~GKStLllq~a~~~a~~--g~~VlYvs~EE--s~~qi~-~Ra~rlg~~~~~l~l~~e~~le~I~~~i~~ 156 (372)
T cd01121 82 GSVILIGGDPGIGKSTLLLQVAARLAKR--GGKVLYVSGEE--SPEQIK-LRADRLGISTENLYLLAETNLEDILASIEE 156 (372)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHhc--CCeEEEEECCc--CHHHHH-HHHHHcCCCcccEEEEccCcHHHHHHHHHh
Confidence 4689999999999999999999876532 34677887654 333332 2245566543221 011224455556655
Q ss_pred CCeEEEEEeCCC
Q 010355 248 EKKILVILDDIW 259 (512)
Q Consensus 248 ~k~~LlVlDdv~ 259 (512)
.++-+||+|.+.
T Consensus 157 ~~~~lVVIDSIq 168 (372)
T cd01121 157 LKPDLVIIDSIQ 168 (372)
T ss_pred cCCcEEEEcchH
Confidence 577899999984
No 223
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.91 E-value=0.0074 Score=62.38 Aligned_cols=88 Identities=23% Similarity=0.281 Sum_probs=52.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCC-CCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHhCC
Q 010355 170 VHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQ-RPDVKKIQGQIADKLGLKFYEESESGRARKLCERLKKE 248 (512)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~-~~~~~~ll~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 248 (512)
..+|+|+|++|+||||++..++.....+.....+..++... .......++.....++...........+..+++.+.
T Consensus 350 G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l~-- 427 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERLR-- 427 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHhc--
Confidence 47999999999999999999887765332223455555432 222333444444555554433333333444444553
Q ss_pred CeEEEEEeCCC
Q 010355 249 KKILVILDDIW 259 (512)
Q Consensus 249 k~~LlVlDdv~ 259 (512)
..=+||+|..-
T Consensus 428 ~~DLVLIDTaG 438 (559)
T PRK12727 428 DYKLVLIDTAG 438 (559)
T ss_pred cCCEEEecCCC
Confidence 34688889874
No 224
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=96.90 E-value=0.0061 Score=60.03 Aligned_cols=57 Identities=25% Similarity=0.384 Sum_probs=41.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhhhhcC----CCCeEEEEEeCCCCCHHHHHHHHHHHhCC
Q 010355 170 VHMIGAYGMAGVGKTMLVKEVARQAKADK----LFDEVVYAEVSQRPDVKKIQGQIADKLGL 227 (512)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~f~~~~wv~~~~~~~~~~ll~~i~~~l~~ 227 (512)
..++-|+|.+|+|||+|+.+++....... .-..++||+....+++..+. +++..++.
T Consensus 95 g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~-~~~~~~gl 155 (310)
T TIGR02236 95 QAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIM-QMAEARGL 155 (310)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHH-HHHHHcCC
Confidence 57889999999999999999987653211 11378999998888877654 44555554
No 225
>PRK13531 regulatory ATPase RavA; Provisional
Probab=96.90 E-value=0.0027 Score=64.84 Aligned_cols=49 Identities=12% Similarity=0.206 Sum_probs=40.1
Q ss_pred ccccchHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHhhhhcCCC
Q 010355 150 AFESRMSTLNDVINALKNPDVHMIGAYGMAGVGKTMLVKEVARQAKADKLF 200 (512)
Q Consensus 150 ~~~gR~~~l~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f 200 (512)
.|+||++.++.+...+..+ ..|.|.|++|+|||+||+.+.........|
T Consensus 21 ~i~gre~vI~lll~aalag--~hVLL~GpPGTGKT~LAraLa~~~~~~~~F 69 (498)
T PRK13531 21 GLYERSHAIRLCLLAALSG--ESVFLLGPPGIAKSLIARRLKFAFQNARAF 69 (498)
T ss_pred hccCcHHHHHHHHHHHccC--CCEEEECCCChhHHHHHHHHHHHhcccCcc
Confidence 4889999999998888754 568899999999999999999876533334
No 226
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=96.89 E-value=0.011 Score=58.66 Aligned_cols=101 Identities=19% Similarity=0.183 Sum_probs=61.1
Q ss_pred HHHHHHHHhcCC----CceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCC-CCCHHHHHHHHHHHhCCCCCC
Q 010355 157 TLNDVINALKNP----DVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQ-RPDVKKIQGQIADKLGLKFYE 231 (512)
Q Consensus 157 ~l~~l~~~L~~~----~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~-~~~~~~ll~~i~~~l~~~~~~ 231 (512)
.+..+..++..+ +.++|.++|+.|+||||-...++.+......=..+..|+... .....+-++.-+.-++.+...
T Consensus 186 ~l~~~~~~~~~~~~~~~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~v 265 (407)
T COG1419 186 KLRKLLLSLIENLIVEQKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEV 265 (407)
T ss_pred HHHHHHHhhccccccccCcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEE
Confidence 344555555543 479999999999999965444444433111223455665543 235566677778888887766
Q ss_pred CCchHHHHHHHHHHhCCCeEEEEEeCCC
Q 010355 232 ESESGRARKLCERLKKEKKILVILDDIW 259 (512)
Q Consensus 232 ~~~~~~~~~l~~~l~~~k~~LlVlDdv~ 259 (512)
......+......+.. . =+|.+|-+-
T Consensus 266 v~~~~el~~ai~~l~~-~-d~ILVDTaG 291 (407)
T COG1419 266 VYSPKELAEAIEALRD-C-DVILVDTAG 291 (407)
T ss_pred ecCHHHHHHHHHHhhc-C-CEEEEeCCC
Confidence 5555555555555553 2 566677664
No 227
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.88 E-value=0.0075 Score=59.76 Aligned_cols=89 Identities=16% Similarity=0.183 Sum_probs=57.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCC-CCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHhC
Q 010355 169 DVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQR-PDVKKIQGQIADKLGLKFYEESESGRARKLCERLKK 247 (512)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-~~~~~ll~~i~~~l~~~~~~~~~~~~~~~l~~~l~~ 247 (512)
+.++++|+|+.|+||||++..++.....+ -..+.++++... .....-++.....++.+.........+......+..
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~--g~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~~ 282 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQ--NRTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMTY 282 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHHh
Confidence 45899999999999999999998776533 235666766432 234556677777777654433333334444444431
Q ss_pred -CCeEEEEEeCCC
Q 010355 248 -EKKILVILDDIW 259 (512)
Q Consensus 248 -~k~~LlVlDdv~ 259 (512)
+..=+|++|-.-
T Consensus 283 ~~~~D~VLIDTAG 295 (407)
T PRK12726 283 VNCVDHILIDTVG 295 (407)
T ss_pred cCCCCEEEEECCC
Confidence 234678888874
No 228
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.87 E-value=0.0014 Score=56.06 Aligned_cols=28 Identities=36% Similarity=0.419 Sum_probs=24.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhhhhcC
Q 010355 171 HMIGAYGMAGVGKTMLVKEVARQAKADK 198 (512)
Q Consensus 171 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~ 198 (512)
.-|+|.|++|+|||||++.+++..+.+.
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~L~~~g 33 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEKLREKG 33 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHHHhcC
Confidence 4689999999999999999999887653
No 229
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=96.86 E-value=0.0047 Score=57.43 Aligned_cols=41 Identities=22% Similarity=0.311 Sum_probs=32.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCC
Q 010355 170 VHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRP 212 (512)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~ 212 (512)
-.++.|+|.+|+|||||+.+++..... .-..++|++....+
T Consensus 19 g~i~~i~G~~GsGKT~l~~~~a~~~~~--~g~~v~yi~~e~~~ 59 (218)
T cd01394 19 GTVTQVYGPPGTGKTNIAIQLAVETAG--QGKKVAYIDTEGLS 59 (218)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHh--cCCeEEEEECCCCC
Confidence 578999999999999999999887653 23467888765544
No 230
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=96.86 E-value=0.0037 Score=56.46 Aligned_cols=109 Identities=16% Similarity=0.185 Sum_probs=60.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCC----------------CCch
Q 010355 172 MIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIADKLGLKFYE----------------ESES 235 (512)
Q Consensus 172 vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~i~~~l~~~~~~----------------~~~~ 235 (512)
++.|.|++|+|||+|+.+++...... -..++|++... +...+...+ .++|..... .+..
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~~~--g~~v~~~s~e~--~~~~~~~~~-~~~g~~~~~l~~~g~l~~~d~~~~~~s~~ 75 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGLAR--GEPGLYVTLEE--SPEELIENA-ESLGWDLERLEDEGLLAIVDADPDEIGPA 75 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHC--CCcEEEEECCC--CHHHHHHHH-HHcCCChHHHHhcCCeEEEecCccccchh
Confidence 36899999999999999988765422 34577887654 455554443 333332110 0000
Q ss_pred ------HHHHHHHHHHhCCCeEEEEEeCCCChhh---------hhhhCCCCCCCCeEEEEEeCCc
Q 010355 236 ------GRARKLCERLKKEKKILVILDDIWTNLD---------LENVGIPFGVRGCRVLMTARSQ 285 (512)
Q Consensus 236 ------~~~~~l~~~l~~~k~~LlVlDdv~~~~~---------~~~l~~~~~~~gs~iivTtR~~ 285 (512)
.....+...+...++-++|+|.+..... +..+...+...|..+|+|+...
T Consensus 76 ~~~~~~~~~~~i~~~~~~~~~~~lviD~~~~~~~~~~~~~~~~i~~l~~~l~~~g~tvi~v~~~~ 140 (187)
T cd01124 76 ESSLRLELIQRLKDAIEEFKAKRVVIDSVSGLLLMEQSTARLEIRRLLFALKRFGVTTLLTSEQS 140 (187)
T ss_pred hhhhhHHHHHHHHHHHHHhCCCEEEEeCcHHHhhcChHHHHHHHHHHHHHHHHCCCEEEEEeccc
Confidence 1123444444444678999999853211 1111111123466788887654
No 231
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=96.85 E-value=0.14 Score=51.32 Aligned_cols=60 Identities=25% Similarity=0.381 Sum_probs=42.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEe-CCCCCHHHHHHHHHHHhCCCCC
Q 010355 169 DVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEV-SQRPDVKKIQGQIADKLGLKFY 230 (512)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~-~~~~~~~~ll~~i~~~l~~~~~ 230 (512)
.+.+|.++|.-|+||||.+..+++.++.+ .+ .+.-|++ -..+...+-++.+..+++.+..
T Consensus 99 ~P~vImmvGLQGsGKTTt~~KLA~~lkk~-~~-kvllVaaD~~RpAA~eQL~~La~q~~v~~f 159 (451)
T COG0541 99 PPTVILMVGLQGSGKTTTAGKLAKYLKKK-GK-KVLLVAADTYRPAAIEQLKQLAEQVGVPFF 159 (451)
T ss_pred CCeEEEEEeccCCChHhHHHHHHHHHHHc-CC-ceEEEecccCChHHHHHHHHHHHHcCCcee
Confidence 46789999999999999999999988753 22 2223332 2334556667788888876643
No 232
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=96.82 E-value=0.12 Score=50.68 Aligned_cols=47 Identities=17% Similarity=0.192 Sum_probs=34.0
Q ss_pred ceecCCCCHHHHHHHHHHHhCCCCCC--chhHHHHHHHHHHcCCChhHH
Q 010355 297 NFLIGVLNESEARDLFKKLVGDKIEN--NDLKSLAMNIVKACRGLPIAI 343 (512)
Q Consensus 297 ~~~l~~L~~~ea~~Lf~~~~~~~~~~--~~~~~~~~~I~~~~~GlPLai 343 (512)
.+++++++.+|+..++.-+....... ..-+...+++.-..+|+|.-+
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e~~~~~s~GNp~el 306 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADSGWLRSRVDEELVLEKLFLSSNGNPREL 306 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHCCccccCCCCHHHHHHHHHhcCCCHHHh
Confidence 78999999999999999877432221 223445667777779999754
No 233
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=96.81 E-value=0.011 Score=56.35 Aligned_cols=92 Identities=23% Similarity=0.337 Sum_probs=58.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCC-CHHHHHHHHHHHhCCC-------CCCCCch-----
Q 010355 169 DVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRP-DVKKIQGQIADKLGLK-------FYEESES----- 235 (512)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~ll~~i~~~l~~~-------~~~~~~~----- 235 (512)
.-.-++|.|.+|+|||||++.+++....+ +-+.++++-+++.. ...+++..+...-... ....+..
T Consensus 68 ~GQr~~If~~~G~GKTtLa~~i~~~i~~~-~~~~~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~~ 146 (274)
T cd01133 68 KGGKIGLFGGAGVGKTVLIMELINNIAKA-HGGYSVFAGVGERTREGNDLYHEMKESGVLSKTALVYGQMNEPPGARARV 146 (274)
T ss_pred cCCEEEEecCCCCChhHHHHHHHHHHHhc-CCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHH
Confidence 34678999999999999999999988743 22456677776654 4455666554432111 0111111
Q ss_pred -HHHHHHHHHHh-C-CCeEEEEEeCCCCh
Q 010355 236 -GRARKLCERLK-K-EKKILVILDDIWTN 261 (512)
Q Consensus 236 -~~~~~l~~~l~-~-~k~~LlVlDdv~~~ 261 (512)
.....+.+++. + ++.+||++|++...
T Consensus 147 ~~~a~~~AEyfr~~~g~~Vl~~~Dsltr~ 175 (274)
T cd01133 147 ALTGLTMAEYFRDEEGQDVLLFIDNIFRF 175 (274)
T ss_pred HHHHHHHHHHHHHhcCCeEEEEEeChhHH
Confidence 12334556664 3 79999999999643
No 234
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=96.80 E-value=0.0076 Score=59.51 Aligned_cols=58 Identities=24% Similarity=0.371 Sum_probs=42.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhhhcCC----CCeEEEEEeCCCCCHHHHHHHHHHHhCC
Q 010355 169 DVHMIGAYGMAGVGKTMLVKEVARQAKADKL----FDEVVYAEVSQRPDVKKIQGQIADKLGL 227 (512)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----f~~~~wv~~~~~~~~~~ll~~i~~~l~~ 227 (512)
...++-|+|++|+|||+|+.+++........ -..++||+....+++..+.+ ++..++.
T Consensus 101 ~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~~-~~~~~g~ 162 (317)
T PRK04301 101 TQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIEQ-MAEALGL 162 (317)
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHHH-HHHHcCC
Confidence 3578889999999999999999876432111 14789999988888776654 4455554
No 235
>PTZ00035 Rad51 protein; Provisional
Probab=96.79 E-value=0.008 Score=59.58 Aligned_cols=89 Identities=18% Similarity=0.215 Sum_probs=54.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhhhhc----CCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCC----------CCch
Q 010355 170 VHMIGAYGMAGVGKTMLVKEVARQAKAD----KLFDEVVYAEVSQRPDVKKIQGQIADKLGLKFYE----------ESES 235 (512)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~----~~f~~~~wv~~~~~~~~~~ll~~i~~~l~~~~~~----------~~~~ 235 (512)
..++.|+|.+|+|||+|+.+++-..... ..-..++|++....+++.. +.++++.++..... .+..
T Consensus 118 G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~er-i~~ia~~~g~~~~~~l~nI~~~~~~~~e 196 (337)
T PTZ00035 118 GSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPER-IVQIAERFGLDPEDVLDNIAYARAYNHE 196 (337)
T ss_pred CeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHH-HHHHHHHhCCChHhHhhceEEEccCCHH
Confidence 5788999999999999999887544310 1123577999887777766 44556665543211 1111
Q ss_pred H---HHHHHHHHHhCCCeEEEEEeCCC
Q 010355 236 G---RARKLCERLKKEKKILVILDDIW 259 (512)
Q Consensus 236 ~---~~~~l~~~l~~~k~~LlVlDdv~ 259 (512)
. .+..+...+...+.-|||+|.+.
T Consensus 197 ~~~~~l~~~~~~l~~~~~~lvVIDSit 223 (337)
T PTZ00035 197 HQMQLLSQAAAKMAEERFALLIVDSAT 223 (337)
T ss_pred HHHHHHHHHHHHhhccCccEEEEECcH
Confidence 1 12222333334456788999874
No 236
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.78 E-value=0.0065 Score=54.17 Aligned_cols=54 Identities=22% Similarity=0.314 Sum_probs=33.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCC-CCHHHHHHHHHHHhCC
Q 010355 172 MIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQR-PDVKKIQGQIADKLGL 227 (512)
Q Consensus 172 vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-~~~~~ll~~i~~~l~~ 227 (512)
++.++|++|+||||++..++...... -..++.++.... ......+...+...+.
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~--g~~v~~i~~D~~~~~~~~~l~~~~~~~~~ 56 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKK--GKKVLLVAADTYRPAAIEQLRVLGEQVGV 56 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC--CCcEEEEEcCCCChHHHHHHHHhcccCCe
Confidence 67899999999999999999877643 123444544322 2333444444555554
No 237
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.78 E-value=0.0063 Score=61.20 Aligned_cols=85 Identities=21% Similarity=0.262 Sum_probs=47.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCC-CCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHhCC
Q 010355 170 VHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQ-RPDVKKIQGQIADKLGLKFYEESESGRARKLCERLKKE 248 (512)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~-~~~~~~ll~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 248 (512)
..+++|+|++|+||||++.+++........+ .+..++... .......++..+..++.+.... .....+...+...
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~-~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~---~~~~~l~~~l~~~ 298 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGK-SVSLYTTDNYRIAAIEQLKRYADTMGMPFYPV---KDIKKFKETLARD 298 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCC-eEEEecccchhhhHHHHHHHHHHhcCCCeeeh---HHHHHHHHHHHhC
Confidence 4689999999999999999998755322122 233333322 1223344455555666543221 1133444444433
Q ss_pred CeEEEEEeCC
Q 010355 249 KKILVILDDI 258 (512)
Q Consensus 249 k~~LlVlDdv 258 (512)
..=+||+|-.
T Consensus 299 ~~D~VLIDTa 308 (432)
T PRK12724 299 GSELILIDTA 308 (432)
T ss_pred CCCEEEEeCC
Confidence 3356888843
No 238
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=96.77 E-value=0.0079 Score=56.80 Aligned_cols=114 Identities=18% Similarity=0.183 Sum_probs=60.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhhhcCC----------CCeEEEEEeCCCC-CHHHHHHHHHHHhCCCCC----------
Q 010355 172 MIGAYGMAGVGKTMLVKEVARQAKADKL----------FDEVVYAEVSQRP-DVKKIQGQIADKLGLKFY---------- 230 (512)
Q Consensus 172 vi~I~G~gGiGKTtLa~~v~~~~~~~~~----------f~~~~wv~~~~~~-~~~~ll~~i~~~l~~~~~---------- 230 (512)
+..|+|++|+|||+|+.+++........ -..+++++..... .+..-+..+...++....
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~va~G~~~~g~~~~~~~~~~Vlyi~~Ed~~~~i~~Rl~~i~~~~~~~~~~~rl~~~~g~ 82 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALAMALGKNLFGGGLKVTEPGRVVYLSAEDPREEIHRRLEAILQHLEPDDAGDRLFIDSGR 82 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHHHhcCccccCCccccCCCceEEEEECCCCHHHHHHHHHHHHhhcCCcCcccceEEeccC
Confidence 5679999999999999999876543211 1235566554432 223333334443321100
Q ss_pred -------C---CCchHHHHHHHHHHhCCCeEEEEEeCCCC--------hhhhhhhCCCC----CCCCeEEEEEeCCc
Q 010355 231 -------E---ESESGRARKLCERLKKEKKILVILDDIWT--------NLDLENVGIPF----GVRGCRVLMTARSQ 285 (512)
Q Consensus 231 -------~---~~~~~~~~~l~~~l~~~k~~LlVlDdv~~--------~~~~~~l~~~~----~~~gs~iivTtR~~ 285 (512)
. ......+..+.+.+...++-+||+|.+.. ......+...+ ...|+.||+++...
T Consensus 83 ~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~lvviDpl~~~~~~~~~d~~~~~~~~~~L~~~a~~~g~avl~v~H~~ 159 (239)
T cd01125 83 IQPISIAREGRIIVVPEFERIIEQLLIRRIDLVVIDPLVSFHGVSENDNGAMDAVIKALRRIAAQTGAAILLVHHVR 159 (239)
T ss_pred CCceecccCCcccccHHHHHHHHHHHhcCCCEEEECChHHhCCCCcCCHHHHHHHHHHHHHHHHHhCCEEEEEeccC
Confidence 0 01123345555555444678999997631 11222211111 14577888888755
No 239
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.77 E-value=0.003 Score=57.77 Aligned_cols=107 Identities=8% Similarity=0.086 Sum_probs=57.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCCCHHHHHH---HHHHHhCCCCCCCCchHHHHHHHHHHhC
Q 010355 171 HMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQG---QIADKLGLKFYEESESGRARKLCERLKK 247 (512)
Q Consensus 171 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ll~---~i~~~l~~~~~~~~~~~~~~~l~~~l~~ 247 (512)
++|.|+|+.|+||||++..++..... .....++.- ..+.. .... .++.+-.. ..........+...++.
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~~~--~~~~~i~t~-e~~~E--~~~~~~~~~i~q~~v---g~~~~~~~~~i~~aLr~ 73 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYINK--NKTHHILTI-EDPIE--FVHESKRSLINQREV---GLDTLSFENALKAALRQ 73 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhhh--cCCcEEEEE-cCCcc--ccccCccceeeeccc---CCCccCHHHHHHHHhcC
Confidence 57899999999999999988776642 233333322 11111 0000 01111000 01112233445555554
Q ss_pred CCeEEEEEeCCCChhhhhhhCCCCCCCCeEEEEEeCCcch
Q 010355 248 EKKILVILDDIWTNLDLENVGIPFGVRGCRVLMTARSQDV 287 (512)
Q Consensus 248 ~k~~LlVlDdv~~~~~~~~l~~~~~~~gs~iivTtR~~~v 287 (512)
.+=+|++|.+.+...+...... ...|..++.|+....+
T Consensus 74 -~pd~ii~gEird~e~~~~~l~~-a~~G~~v~~t~Ha~~~ 111 (198)
T cd01131 74 -DPDVILVGEMRDLETIRLALTA-AETGHLVMSTLHTNSA 111 (198)
T ss_pred -CcCEEEEcCCCCHHHHHHHHHH-HHcCCEEEEEecCCcH
Confidence 5779999999876654442111 1345567888776654
No 240
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=96.77 E-value=0.0066 Score=59.65 Aligned_cols=59 Identities=19% Similarity=0.221 Sum_probs=41.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhhhc---C-CCCeEEEEEeCCCCCHHHHHHHHHHHhCCC
Q 010355 169 DVHMIGAYGMAGVGKTMLVKEVARQAKAD---K-LFDEVVYAEVSQRPDVKKIQGQIADKLGLK 228 (512)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~---~-~f~~~~wv~~~~~~~~~~ll~~i~~~l~~~ 228 (512)
...++.|+|.+|+|||+|+.+++...... . .-..++|++....++... +.++++.++..
T Consensus 95 ~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~R-l~~ia~~~~~~ 157 (316)
T TIGR02239 95 TGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPER-LLAIAERYGLN 157 (316)
T ss_pred CCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHH-HHHHHHHcCCC
Confidence 35789999999999999999987643211 1 123679999888777776 44455665543
No 241
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=96.77 E-value=0.019 Score=53.26 Aligned_cols=91 Identities=20% Similarity=0.294 Sum_probs=56.6
Q ss_pred cccccchHHHHHHHHHhc-------------CCCceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCCCHH
Q 010355 149 EAFESRMSTLNDVINALK-------------NPDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVK 215 (512)
Q Consensus 149 ~~~~gR~~~l~~l~~~L~-------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 215 (512)
..+-|=.+++++|.+... -...+-|.++|++|.|||-+|++|+++-.. .|-.++ .
T Consensus 177 ~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtda--cfirvi-----g----- 244 (435)
T KOG0729|consen 177 SDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTDA--CFIRVI-----G----- 244 (435)
T ss_pred ccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccCc--eEEeeh-----h-----
Confidence 344566677777665433 134577889999999999999999987552 232222 1
Q ss_pred HHHHHHHHHhCCCCCCCCchHHHHHHHHHHhCCCeEEEEEeCCC
Q 010355 216 KIQGQIADKLGLKFYEESESGRARKLCERLKKEKKILVILDDIW 259 (512)
Q Consensus 216 ~ll~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~ 259 (512)
..+.+..- ......+..+++..+..|-|+|+||.+.
T Consensus 245 ---selvqkyv-----gegarmvrelf~martkkaciiffdeid 280 (435)
T KOG0729|consen 245 ---SELVQKYV-----GEGARMVRELFEMARTKKACIIFFDEID 280 (435)
T ss_pred ---HHHHHHHh-----hhhHHHHHHHHHHhcccceEEEEeeccc
Confidence 11111110 1122345566666667788999999874
No 242
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.76 E-value=0.005 Score=58.62 Aligned_cols=28 Identities=32% Similarity=0.377 Sum_probs=25.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhhhhc
Q 010355 170 VHMIGAYGMAGVGKTMLVKEVARQAKAD 197 (512)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~ 197 (512)
.++|.++|++|.|||+|++.+++...++
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR 204 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIR 204 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheee
Confidence 4899999999999999999999988764
No 243
>PRK06547 hypothetical protein; Provisional
Probab=96.76 E-value=0.0023 Score=56.93 Aligned_cols=36 Identities=22% Similarity=0.208 Sum_probs=29.2
Q ss_pred HHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHhhh
Q 010355 160 DVINALKNPDVHMIGAYGMAGVGKTMLVKEVARQAK 195 (512)
Q Consensus 160 ~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 195 (512)
.+...+......+|+|.|++|+||||||+.++....
T Consensus 5 ~~~~~~~~~~~~~i~i~G~~GsGKTt~a~~l~~~~~ 40 (172)
T PRK06547 5 LIAARLCGGGMITVLIDGRSGSGKTTLAGALAARTG 40 (172)
T ss_pred HHHHHhhcCCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 344445567788999999999999999999988754
No 244
>PRK14974 cell division protein FtsY; Provisional
Probab=96.75 E-value=0.015 Score=57.38 Aligned_cols=90 Identities=24% Similarity=0.259 Sum_probs=51.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCC-CCCHHHHHHHHHHHhCCCCCCC----CchHHHHHHHH
Q 010355 169 DVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQ-RPDVKKIQGQIADKLGLKFYEE----SESGRARKLCE 243 (512)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~-~~~~~~ll~~i~~~l~~~~~~~----~~~~~~~~l~~ 243 (512)
+..+|.++|++|+||||++..++...... .+ .++.+.... ......-++..+..++.+.... .....+....+
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~-g~-~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai~ 216 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKN-GF-SVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAIE 216 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHc-CC-eEEEecCCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHHH
Confidence 46899999999999999999998877643 23 344444321 1233345566777777654321 11121222222
Q ss_pred HHhCCCeEEEEEeCCCC
Q 010355 244 RLKKEKKILVILDDIWT 260 (512)
Q Consensus 244 ~l~~~k~~LlVlDdv~~ 260 (512)
.......=+|++|-.-.
T Consensus 217 ~~~~~~~DvVLIDTaGr 233 (336)
T PRK14974 217 HAKARGIDVVLIDTAGR 233 (336)
T ss_pred HHHhCCCCEEEEECCCc
Confidence 22222223899998743
No 245
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.75 E-value=0.0036 Score=53.54 Aligned_cols=43 Identities=26% Similarity=0.335 Sum_probs=32.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCCCHHHHHHH
Q 010355 173 IGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQ 220 (512)
Q Consensus 173 i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~ 220 (512)
|.|+|++|+|||+||+.+++... ....-+.++...+..+++..
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~~-----~~~~~i~~~~~~~~~dl~g~ 44 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALLG-----RPVIRINCSSDTTEEDLIGS 44 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHT-----CEEEEEE-TTTSTHHHHHCE
T ss_pred EEEECCCCCCHHHHHHHHHHHhh-----cceEEEEeccccccccceee
Confidence 68999999999999999998873 23445677777777776543
No 246
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=96.75 E-value=0.0063 Score=60.21 Aligned_cols=58 Identities=21% Similarity=0.283 Sum_probs=42.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhhhhc----CCCCeEEEEEeCCCCCHHHHHHHHHHHhCCC
Q 010355 170 VHMIGAYGMAGVGKTMLVKEVARQAKAD----KLFDEVVYAEVSQRPDVKKIQGQIADKLGLK 228 (512)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~----~~f~~~~wv~~~~~~~~~~ll~~i~~~l~~~ 228 (512)
..++-|+|.+|+|||+|+..++-..... ..-..++|++....+++..+ .++++.++..
T Consensus 123 g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl-~qia~~~~~~ 184 (342)
T PLN03186 123 GSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRL-IQIAERFGLN 184 (342)
T ss_pred ceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHH-HHHHHHcCCC
Confidence 5788899999999999999887543211 11236999999998888776 4566766654
No 247
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=96.75 E-value=0.013 Score=56.00 Aligned_cols=124 Identities=18% Similarity=0.161 Sum_probs=67.3
Q ss_pred HHHHHHhc-CCCceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhC-CCCCC-----
Q 010355 159 NDVINALK-NPDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIADKLG-LKFYE----- 231 (512)
Q Consensus 159 ~~l~~~L~-~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~i~~~l~-~~~~~----- 231 (512)
+.++..|. ......++|+|+.|+|||||.+.++..... ..+.+++.-..-... +-..++..... .+...
T Consensus 99 ~~~l~~l~~~~~~~~~~i~g~~g~GKttl~~~l~~~~~~---~~G~i~~~g~~v~~~-d~~~ei~~~~~~~~q~~~~~r~ 174 (270)
T TIGR02858 99 DKLLPYLVRNNRVLNTLIISPPQCGKTTLLRDLARILST---GISQLGLRGKKVGIV-DERSEIAGCVNGVPQHDVGIRT 174 (270)
T ss_pred HHHHHHHHhCCCeeEEEEEcCCCCCHHHHHHHHhCccCC---CCceEEECCEEeecc-hhHHHHHHHhcccccccccccc
Confidence 33444443 444578999999999999999999977652 233444321111000 11122322221 11110
Q ss_pred --CCchHHHHHHHHHHhCCCeEEEEEeCCCChhhhhhhCCCCCCCCeEEEEEeCCcch
Q 010355 232 --ESESGRARKLCERLKKEKKILVILDDIWTNLDLENVGIPFGVRGCRVLMTARSQDV 287 (512)
Q Consensus 232 --~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~~~~l~~~~~~~gs~iivTtR~~~v 287 (512)
.........+...++...+-+|++|.+.....+..+.... ..|..||+||....+
T Consensus 175 ~v~~~~~k~~~~~~~i~~~~P~villDE~~~~e~~~~l~~~~-~~G~~vI~ttH~~~~ 231 (270)
T TIGR02858 175 DVLDGCPKAEGMMMLIRSMSPDVIVVDEIGREEDVEALLEAL-HAGVSIIATAHGRDV 231 (270)
T ss_pred cccccchHHHHHHHHHHhCCCCEEEEeCCCcHHHHHHHHHHH-hCCCEEEEEechhHH
Confidence 0111122334444554578999999997666555442222 357789999987554
No 248
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=96.74 E-value=0.013 Score=54.83 Aligned_cols=29 Identities=21% Similarity=0.339 Sum_probs=25.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHhhhh
Q 010355 168 PDVHMIGAYGMAGVGKTMLVKEVARQAKA 196 (512)
Q Consensus 168 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 196 (512)
....+++|.|++|+|||||++.+....+.
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l~~ 59 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALLQQ 59 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 56789999999999999999999988764
No 249
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=96.74 E-value=0.055 Score=49.81 Aligned_cols=73 Identities=27% Similarity=0.348 Sum_probs=46.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHhC
Q 010355 168 PDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIADKLGLKFYEESESGRARKLCERLKK 247 (512)
Q Consensus 168 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~i~~~l~~~~~~~~~~~~~~~l~~~l~~ 247 (512)
+..+-|.++|++|+|||.||+++++.-.. .| +.+-.. ++.+ +.||.. ...+..+++..+.
T Consensus 187 dpprgvllygppg~gktml~kava~~t~a--~f-----irvvgs----efvq---kylgeg------prmvrdvfrlake 246 (408)
T KOG0727|consen 187 DPPRGVLLYGPPGTGKTMLAKAVANHTTA--AF-----IRVVGS----EFVQ---KYLGEG------PRMVRDVFRLAKE 246 (408)
T ss_pred CCCcceEEeCCCCCcHHHHHHHHhhccch--he-----eeeccH----HHHH---HHhccC------cHHHHHHHHHHhc
Confidence 35678899999999999999999987653 23 333221 1111 122321 2344555555556
Q ss_pred CCeEEEEEeCCCC
Q 010355 248 EKKILVILDDIWT 260 (512)
Q Consensus 248 ~k~~LlVlDdv~~ 260 (512)
+-+.+|++|.+..
T Consensus 247 napsiifideida 259 (408)
T KOG0727|consen 247 NAPSIIFIDEIDA 259 (408)
T ss_pred cCCcEEEeehhhh
Confidence 7889999998853
No 250
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=96.74 E-value=0.013 Score=55.00 Aligned_cols=39 Identities=23% Similarity=0.325 Sum_probs=30.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCC
Q 010355 170 VHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQ 210 (512)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~ 210 (512)
-.++.|.|.+|+|||+|+.+++..... .-..++|++...
T Consensus 20 G~~~~i~G~~G~GKT~l~~~~~~~~~~--~g~~~~~is~e~ 58 (229)
T TIGR03881 20 GFFVAVTGEPGTGKTIFCLHFAYKGLR--DGDPVIYVTTEE 58 (229)
T ss_pred CeEEEEECCCCCChHHHHHHHHHHHHh--cCCeEEEEEccC
Confidence 478999999999999999998765432 245678887644
No 251
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=96.74 E-value=0.0016 Score=55.84 Aligned_cols=44 Identities=16% Similarity=0.280 Sum_probs=30.5
Q ss_pred ccchHHHHHHHHHhc--CCCceEEEEEcCCCCcHHHHHHHHHHhhh
Q 010355 152 ESRMSTLNDVINALK--NPDVHMIGAYGMAGVGKTMLVKEVARQAK 195 (512)
Q Consensus 152 ~gR~~~l~~l~~~L~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 195 (512)
+|+-..++++.+.+. ......|.|+|..|+||+++|+.++....
T Consensus 1 vG~S~~~~~l~~~l~~~a~~~~pvli~GE~GtGK~~~A~~lh~~~~ 46 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAKSSSPVLITGEPGTGKSLLARALHRYSG 46 (138)
T ss_dssp --SCHHHHHHHHHHHHHHCSSS-EEEECCTTSSHHHHHHCCHHTTT
T ss_pred CCCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCCHHHHHHHHHhhcC
Confidence 355556666665554 23446678999999999999999887654
No 252
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.74 E-value=0.0061 Score=57.15 Aligned_cols=117 Identities=20% Similarity=0.239 Sum_probs=66.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCC-----CCCHHHHHHHHHHHhCCCCC-------CCCchH
Q 010355 169 DVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQ-----RPDVKKIQGQIADKLGLKFY-------EESESG 236 (512)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~-----~~~~~~ll~~i~~~l~~~~~-------~~~~~~ 236 (512)
...+++|+|.+|+|||||++.+..-... -.+.+++.-.. .....+-..+++..+|++.. +.+..+
T Consensus 38 ~ge~~glVGESG~GKSTlgr~i~~L~~p---t~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQ 114 (268)
T COG4608 38 EGETLGLVGESGCGKSTLGRLILGLEEP---TSGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQ 114 (268)
T ss_pred CCCEEEEEecCCCCHHHHHHHHHcCcCC---CCceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchh
Confidence 4478999999999999999999987653 23344433221 22234455666777775421 112222
Q ss_pred HHH-HHHHHHhCCCeEEEEEeCCCChhhh------hhhCCCCC-CCCeEEEEEeCCcchhc
Q 010355 237 RAR-KLCERLKKEKKILVILDDIWTNLDL------ENVGIPFG-VRGCRVLMTARSQDVLS 289 (512)
Q Consensus 237 ~~~-~l~~~l~~~k~~LlVlDdv~~~~~~------~~l~~~~~-~~gs~iivTtR~~~v~~ 289 (512)
... .+.+.|. -++-|||.|..-+..+. -.+..-+. ..|...|+.|.+-.+..
T Consensus 115 rQRi~IARALa-l~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~ 174 (268)
T COG4608 115 RQRIGIARALA-LNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVR 174 (268)
T ss_pred hhhHHHHHHHh-hCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhh
Confidence 222 2333443 47899999987543221 11111111 34566777777766653
No 253
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=96.73 E-value=0.0043 Score=55.85 Aligned_cols=24 Identities=17% Similarity=0.235 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhh
Q 010355 172 MIGAYGMAGVGKTMLVKEVARQAK 195 (512)
Q Consensus 172 vi~I~G~gGiGKTtLa~~v~~~~~ 195 (512)
+|.|+|++|+||||+|+.++....
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~~ 24 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENFG 24 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcC
Confidence 578999999999999999988664
No 254
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=96.72 E-value=0.0022 Score=54.90 Aligned_cols=45 Identities=24% Similarity=0.421 Sum_probs=36.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCC
Q 010355 172 MIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIADKLGLKF 229 (512)
Q Consensus 172 vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~i~~~l~~~~ 229 (512)
+|.|.|++|+||||+|+.+++...-. .+ +...+++++++..|+..
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~gl~-------~v------saG~iFR~~A~e~gmsl 46 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLGLK-------LV------SAGTIFREMARERGMSL 46 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhCCc-------ee------eccHHHHHHHHHcCCCH
Confidence 68999999999999999999987632 12 33478899999988764
No 255
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=96.71 E-value=0.0085 Score=58.14 Aligned_cols=41 Identities=24% Similarity=0.404 Sum_probs=33.9
Q ss_pred cccchHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHH
Q 010355 151 FESRMSTLNDVINALKNPDVHMIGAYGMAGVGKTMLVKEVA 191 (512)
Q Consensus 151 ~~gR~~~l~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~ 191 (512)
+-+|..+-.--+++|.++....|.+.|.+|+|||.||.+..
T Consensus 226 i~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAg 266 (436)
T COG1875 226 IRPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAG 266 (436)
T ss_pred cCcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHH
Confidence 44566666667788889999999999999999999887654
No 256
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=96.70 E-value=0.083 Score=51.35 Aligned_cols=162 Identities=10% Similarity=0.053 Sum_probs=90.9
Q ss_pred HHHHHHhcCC-CceEEEEEcCCCCcHHHHHHHHHHhh--------hhcCCCCeEEEEEe-CCCCCHHHHHHHHHHHhCCC
Q 010355 159 NDVINALKNP-DVHMIGAYGMAGVGKTMLVKEVARQA--------KADKLFDEVVYAEV-SQRPDVKKIQGQIADKLGLK 228 (512)
Q Consensus 159 ~~l~~~L~~~-~~~vi~I~G~gGiGKTtLa~~v~~~~--------~~~~~f~~~~wv~~-~~~~~~~~ll~~i~~~l~~~ 228 (512)
..+.+.+..+ -.++..++|..|.||+++|..+.+.. ....+.+.+.++.. +......++. .++..+...
T Consensus 6 ~~l~~~i~~~~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g~~i~vd~Ir-~l~~~~~~~ 84 (299)
T PRK07132 6 KFLDNSATQNKISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFDKDLSKSEFL-SAINKLYFS 84 (299)
T ss_pred HHHHHHHHhCCCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCCCcCCHHHHH-HHHHHhccC
Confidence 4445555544 35777899999999999999998876 22222323444432 2223333333 344443322
Q ss_pred CCCCCchHHHHHHHHHHhCCCeEEEEEeCCCChh--hhh----hhCCCCCCCCeEEEEEeCCc-chhccccCCccceecC
Q 010355 229 FYEESESGRARKLCERLKKEKKILVILDDIWTNL--DLE----NVGIPFGVRGCRVLMTARSQ-DVLSSKMDCQNNFLIG 301 (512)
Q Consensus 229 ~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~--~~~----~l~~~~~~~gs~iivTtR~~-~v~~~~~~~~~~~~l~ 301 (512)
.. ..+.+-++|+|++.... ..+ .+.-| .+++.+|++|.+. .+..........+++.
T Consensus 85 ~~---------------~~~~~KvvII~~~e~m~~~a~NaLLK~LEEP--p~~t~~il~~~~~~kll~TI~SRc~~~~f~ 147 (299)
T PRK07132 85 SF---------------VQSQKKILIIKNIEKTSNSLLNALLKTIEEP--PKDTYFLLTTKNINKVLPTIVSRCQVFNVK 147 (299)
T ss_pred Cc---------------ccCCceEEEEecccccCHHHHHHHHHHhhCC--CCCeEEEEEeCChHhChHHHHhCeEEEECC
Confidence 11 01466788888886432 222 22222 4566677655443 3333334556789999
Q ss_pred CCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChhHHHH
Q 010355 302 VLNESEARDLFKKLVGDKIENNDLKSLAMNIVKACRGLPIAIVT 345 (512)
Q Consensus 302 ~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~GlPLai~~ 345 (512)
+++..+....+... + .++ +.+..++...+|.=.|+..
T Consensus 148 ~l~~~~l~~~l~~~-~---~~~---~~a~~~a~~~~~~~~a~~~ 184 (299)
T PRK07132 148 EPDQQKILAKLLSK-N---KEK---EYNWFYAYIFSNFEQAEKY 184 (299)
T ss_pred CCCHHHHHHHHHHc-C---CCh---hHHHHHHHHcCCHHHHHHH
Confidence 99999998877664 2 111 3355566666663344444
No 257
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.70 E-value=0.0086 Score=60.23 Aligned_cols=89 Identities=17% Similarity=0.124 Sum_probs=54.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhhhcC--CCCeEEEEEeCCC-CCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHH
Q 010355 169 DVHMIGAYGMAGVGKTMLVKEVARQAKADK--LFDEVVYAEVSQR-PDVKKIQGQIADKLGLKFYEESESGRARKLCERL 245 (512)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~--~f~~~~wv~~~~~-~~~~~ll~~i~~~l~~~~~~~~~~~~~~~l~~~l 245 (512)
..++|.++|+.|+||||.+..++....... .-..+..+++... .....-++..+..++.+.........+......+
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~ 252 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQS 252 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHh
Confidence 357999999999999999999987765321 1234555555432 2233346666777777644333333333333333
Q ss_pred hCCCeEEEEEeCCC
Q 010355 246 KKEKKILVILDDIW 259 (512)
Q Consensus 246 ~~~k~~LlVlDdv~ 259 (512)
.+.-+|++|-.-
T Consensus 253 --~~~DlVLIDTaG 264 (388)
T PRK12723 253 --KDFDLVLVDTIG 264 (388)
T ss_pred --CCCCEEEEcCCC
Confidence 245688889874
No 258
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=96.69 E-value=0.0098 Score=55.27 Aligned_cols=24 Identities=25% Similarity=0.389 Sum_probs=21.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhh
Q 010355 172 MIGAYGMAGVGKTMLVKEVARQAK 195 (512)
Q Consensus 172 vi~I~G~gGiGKTtLa~~v~~~~~ 195 (512)
+|+|.|.+|+||||||+.+.....
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~ 24 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLS 24 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHh
Confidence 589999999999999999998775
No 259
>PF12061 DUF3542: Protein of unknown function (DUF3542); InterPro: IPR021929 R1 is a gene for resistance to late blight, the most destructive disease in potato cultivation worldwide. The R1 gene belongs to the class of plant genes for pathogen resistance that have a leucine zipper motif, a putative nucleotide binding domain and a leucine-rich repeat domain []. Most proteins matching this entry are found associated with PF00931 from PFAM.
Probab=96.69 E-value=0.0043 Score=58.48 Aligned_cols=100 Identities=10% Similarity=0.061 Sum_probs=67.1
Q ss_pred hhhhhhhcchhchH-HhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHhccccccc-c
Q 010355 18 HPIIHPFAYCYNYK-SNLEKLKNEVQKLRGAKESVQQKIDDAKRSGEDIEQRVENWLITADEILDAAARIIEGTEDTT-N 95 (512)
Q Consensus 18 ~~l~~~~~~~~~~~-~~~~~l~~~~~~L~~~l~~i~~~l~~a~~~~~~~~~~~~~wl~~vr~~~~d~ed~ld~~~~~~-~ 95 (512)
..+.+.+..+.+.+ ..+..++.+++-++.+++.+|.||.......+..-...+.+..++...||++|.++|-+.... +
T Consensus 299 dFlL~NLkdfq~rysdSlaflKnQiqvIQ~elesLqpFLk~V~ee~~nkh~~~ed~a~~ii~kAyevEYVVDaCi~k~~P 378 (402)
T PF12061_consen 299 DFLLKNLKDFQGRYSDSLAFLKNQIQVIQTELESLQPFLKHVVEEPHNKHDTNEDCATQIIRKAYEVEYVVDACISKSVP 378 (402)
T ss_pred HHHHhhHHHHhccccchHHHHHHHHHHHHHHHHHhhHHHHHHHhccchhhhhhhhHHHHHHHHHhheeeeeehhhcCCCc
Confidence 44444444444333 336789999999999999999999986444222334599999999999999999999765443 2
Q ss_pred cCCCChhHhhhHHHHHHHHHHHH
Q 010355 96 RLCPNLNTRYQVSKKAAREVKAA 118 (512)
Q Consensus 96 ~~~~~~~~~~~~~~~i~~~~~~l 118 (512)
.||. ..+-+.+..+|.-+++++
T Consensus 379 ~Wcl-~~WL~dIieei~~ik~~i 400 (402)
T PF12061_consen 379 HWCL-ERWLLDIIEEITCIKAKI 400 (402)
T ss_pred HHHH-HHHHHHHHHHHHHHHHHh
Confidence 2331 233344555565555554
No 260
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=96.68 E-value=0.0076 Score=63.09 Aligned_cols=86 Identities=19% Similarity=0.244 Sum_probs=58.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCC----------------C
Q 010355 169 DVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIADKLGLKFYE----------------E 232 (512)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~i~~~l~~~~~~----------------~ 232 (512)
.-.++.|.|++|+|||||+.+++.....+ -..++|++... +..++.... +.+|.+... .
T Consensus 262 ~gs~~li~G~~G~GKt~l~~~f~~~~~~~--ge~~~y~s~eE--s~~~i~~~~-~~lg~~~~~~~~~g~l~~~~~~p~~~ 336 (484)
T TIGR02655 262 KDSIILATGATGTGKTLLVSKFLENACAN--KERAILFAYEE--SRAQLLRNA-YSWGIDFEEMEQQGLLKIICAYPESA 336 (484)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHC--CCeEEEEEeeC--CHHHHHHHH-HHcCCChHHHhhCCcEEEEEcccccC
Confidence 34789999999999999999999877532 34667776554 455666554 555543211 1
Q ss_pred CchHHHHHHHHHHhCCCeEEEEEeCCC
Q 010355 233 SESGRARKLCERLKKEKKILVILDDIW 259 (512)
Q Consensus 233 ~~~~~~~~l~~~l~~~k~~LlVlDdv~ 259 (512)
.....+..+.+.+...++-++|+|.+.
T Consensus 337 ~~~~~~~~i~~~i~~~~~~~vvIDsi~ 363 (484)
T TIGR02655 337 GLEDHLQIIKSEIADFKPARIAIDSLS 363 (484)
T ss_pred ChHHHHHHHHHHHHHcCCCEEEEcCHH
Confidence 124456667777765567788999885
No 261
>PRK05973 replicative DNA helicase; Provisional
Probab=96.68 E-value=0.018 Score=53.82 Aligned_cols=112 Identities=20% Similarity=0.165 Sum_probs=61.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCC--------CchHHHHHH
Q 010355 170 VHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIADKLGLKFYEE--------SESGRARKL 241 (512)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~i~~~l~~~~~~~--------~~~~~~~~l 241 (512)
..++.|.|.+|+|||+|+.+++...... -..++|++.... ..++...+. +++...... ........+
T Consensus 64 Gsl~LIaG~PG~GKT~lalqfa~~~a~~--Ge~vlyfSlEes--~~~i~~R~~-s~g~d~~~~~~~~~~d~~d~~~~~~i 138 (237)
T PRK05973 64 GDLVLLGARPGHGKTLLGLELAVEAMKS--GRTGVFFTLEYT--EQDVRDRLR-ALGADRAQFADLFEFDTSDAICADYI 138 (237)
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHHhc--CCeEEEEEEeCC--HHHHHHHHH-HcCCChHHhccceEeecCCCCCHHHH
Confidence 3688999999999999999998766432 345677766553 455555543 233321110 000011122
Q ss_pred HHHHh-CCCeEEEEEeCCCChh------hhhh----hCCCCCCCCeEEEEEeCCcc
Q 010355 242 CERLK-KEKKILVILDDIWTNL------DLEN----VGIPFGVRGCRVLMTARSQD 286 (512)
Q Consensus 242 ~~~l~-~~k~~LlVlDdv~~~~------~~~~----l~~~~~~~gs~iivTtR~~~ 286 (512)
...+. ..+.-++|+|.+.... .+.. +.......|..||+|+....
T Consensus 139 i~~l~~~~~~~lVVIDsLq~l~~~~~~~el~~~~~~Lk~~Ak~~gitvIl~sQl~r 194 (237)
T PRK05973 139 IARLASAPRGTLVVIDYLQLLDQRREKPDLSVQVRALKSFARERGLIIVFISQIDR 194 (237)
T ss_pred HHHHHHhhCCCEEEEEcHHHHhhcccchhHHHHHHHHHHHHHhCCCeEEEEecCcc
Confidence 33332 2234699999974221 1111 11111256788999887553
No 262
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=96.68 E-value=0.013 Score=55.07 Aligned_cols=86 Identities=16% Similarity=0.177 Sum_probs=54.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCC-----------------
Q 010355 169 DVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIADKLGLKFYE----------------- 231 (512)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~i~~~l~~~~~~----------------- 231 (512)
...++.|+|.+|+|||+|+.+++..... .-..++|++... ++..+++++ .+++.....
T Consensus 24 ~g~~~~i~G~~GsGKt~l~~~~~~~~~~--~g~~~~y~~~e~--~~~~~~~~~-~~~g~~~~~~~~~g~l~i~~~~~~~~ 98 (234)
T PRK06067 24 FPSLILIEGDHGTGKSVLSQQFVYGALK--QGKKVYVITTEN--TSKSYLKQM-ESVKIDISDFFLWGYLRIFPLNTEGF 98 (234)
T ss_pred CCcEEEEECCCCCChHHHHHHHHHHHHh--CCCEEEEEEcCC--CHHHHHHHH-HHCCCChhHHHhCCCceEEecccccc
Confidence 3578999999999999999999765432 245788888865 445666654 334432110
Q ss_pred ----CCchHHHHHHHHHHhCCCeEEEEEeCCC
Q 010355 232 ----ESESGRARKLCERLKKEKKILVILDDIW 259 (512)
Q Consensus 232 ----~~~~~~~~~l~~~l~~~k~~LlVlDdv~ 259 (512)
.........+...+...++-++|+|.+.
T Consensus 99 ~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t 130 (234)
T PRK06067 99 EWNSTLANKLLELIIEFIKSKREDVIIIDSLT 130 (234)
T ss_pred ccCcchHHHHHHHHHHHHHhcCCCEEEEecHH
Confidence 1112344555555554466789999875
No 263
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=96.67 E-value=0.0088 Score=52.80 Aligned_cols=27 Identities=22% Similarity=0.335 Sum_probs=23.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhhhh
Q 010355 170 VHMIGAYGMAGVGKTMLVKEVARQAKA 196 (512)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~v~~~~~~ 196 (512)
-..+.|+|++|.|||||.+.+|...+.
T Consensus 28 Gef~fl~GpSGAGKSTllkLi~~~e~p 54 (223)
T COG2884 28 GEFVFLTGPSGAGKSTLLKLIYGEERP 54 (223)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhhcC
Confidence 467899999999999999999987653
No 264
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=96.66 E-value=0.012 Score=56.67 Aligned_cols=28 Identities=18% Similarity=0.151 Sum_probs=23.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHhhh
Q 010355 168 PDVHMIGAYGMAGVGKTMLVKEVARQAK 195 (512)
Q Consensus 168 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 195 (512)
....+|+|.|..|+||||||+.+.....
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ll~ 87 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQALLS 87 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4568999999999999999988766554
No 265
>PRK07667 uridine kinase; Provisional
Probab=96.65 E-value=0.0029 Score=57.57 Aligned_cols=38 Identities=29% Similarity=0.535 Sum_probs=29.2
Q ss_pred HHHHHHhc--CCCceEEEEEcCCCCcHHHHHHHHHHhhhh
Q 010355 159 NDVINALK--NPDVHMIGAYGMAGVGKTMLVKEVARQAKA 196 (512)
Q Consensus 159 ~~l~~~L~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 196 (512)
+.|.+.+. ..+..+|+|.|.+|+||||+|+.+......
T Consensus 4 ~~~~~~~~~~~~~~~iIgI~G~~gsGKStla~~L~~~l~~ 43 (193)
T PRK07667 4 NELINIMKKHKENRFILGIDGLSRSGKTTFVANLKENMKQ 43 (193)
T ss_pred HHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 34444444 345589999999999999999999987753
No 266
>PRK10867 signal recognition particle protein; Provisional
Probab=96.64 E-value=0.011 Score=60.18 Aligned_cols=28 Identities=29% Similarity=0.368 Sum_probs=24.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhhh
Q 010355 169 DVHMIGAYGMAGVGKTMLVKEVARQAKA 196 (512)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 196 (512)
...+|.++|++|+||||++..++.....
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~~l~~ 126 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAKYLKK 126 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHH
Confidence 4689999999999999999888876653
No 267
>PRK11823 DNA repair protein RadA; Provisional
Probab=96.63 E-value=0.0078 Score=62.12 Aligned_cols=85 Identities=25% Similarity=0.318 Sum_probs=54.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCC--CchHHHHHHHHHHhC
Q 010355 170 VHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIADKLGLKFYEE--SESGRARKLCERLKK 247 (512)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~i~~~l~~~~~~~--~~~~~~~~l~~~l~~ 247 (512)
-.++.|.|.+|+|||||+.+++...... -..++|++... +..++... +..++...... ........+.+.+..
T Consensus 80 Gs~~lI~G~pG~GKTtL~lq~a~~~a~~--g~~vlYvs~Ee--s~~qi~~r-a~rlg~~~~~l~~~~e~~l~~i~~~i~~ 154 (446)
T PRK11823 80 GSVVLIGGDPGIGKSTLLLQVAARLAAA--GGKVLYVSGEE--SASQIKLR-AERLGLPSDNLYLLAETNLEAILATIEE 154 (446)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHhc--CCeEEEEEccc--cHHHHHHH-HHHcCCChhcEEEeCCCCHHHHHHHHHh
Confidence 4689999999999999999998876522 34678887654 33444332 45565432210 011123455555655
Q ss_pred CCeEEEEEeCCC
Q 010355 248 EKKILVILDDIW 259 (512)
Q Consensus 248 ~k~~LlVlDdv~ 259 (512)
.++-+||+|.+.
T Consensus 155 ~~~~lVVIDSIq 166 (446)
T PRK11823 155 EKPDLVVIDSIQ 166 (446)
T ss_pred hCCCEEEEechh
Confidence 567799999984
No 268
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=96.62 E-value=0.021 Score=60.72 Aligned_cols=62 Identities=11% Similarity=0.190 Sum_probs=43.9
Q ss_pred CccccccchHHHHHHHHHhc--CCCceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCC
Q 010355 147 GYEAFESRMSTLNDVINALK--NPDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQ 210 (512)
Q Consensus 147 ~~~~~~gR~~~l~~l~~~L~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~ 210 (512)
....++|....+.++.+.+. ......|.|+|..|+|||++|+.+++..... -...+.|++..
T Consensus 194 ~~~~liG~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~lA~~ih~~s~r~--~~pfv~i~c~~ 257 (534)
T TIGR01817 194 KEDGIIGKSPAMRQVVDQARVVARSNSTVLLRGESGTGKELIAKAIHYLSPRA--KRPFVKVNCAA 257 (534)
T ss_pred ccCceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCccHHHHHHHHHHhCCCC--CCCeEEeecCC
Confidence 34578999988888887665 2334567899999999999999998865421 12334455544
No 269
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=96.62 E-value=0.0098 Score=56.83 Aligned_cols=39 Identities=21% Similarity=0.394 Sum_probs=30.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCC
Q 010355 170 VHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQ 210 (512)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~ 210 (512)
..++.|.|.+|+|||+|+.+++.....+ -..++|++...
T Consensus 36 gs~~lI~G~pGtGKT~l~~qf~~~~a~~--Ge~vlyis~Ee 74 (259)
T TIGR03878 36 YSVINITGVSDTGKSLMVEQFAVTQASR--GNPVLFVTVES 74 (259)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHhC--CCcEEEEEecC
Confidence 4789999999999999999987765422 34678888764
No 270
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=96.62 E-value=0.0027 Score=65.84 Aligned_cols=48 Identities=15% Similarity=0.299 Sum_probs=41.3
Q ss_pred cccccchHHHHHHHHHhc------CCCceEEEEEcCCCCcHHHHHHHHHHhhhh
Q 010355 149 EAFESRMSTLNDVINALK------NPDVHMIGAYGMAGVGKTMLVKEVARQAKA 196 (512)
Q Consensus 149 ~~~~gR~~~l~~l~~~L~------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 196 (512)
..++|-++.+++|+..|. ....+++.++|++|+||||||+.+++....
T Consensus 76 ~d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~le~ 129 (644)
T PRK15455 76 EEFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLMER 129 (644)
T ss_pred hcccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHHHh
Confidence 357899999999999883 456689999999999999999999987753
No 271
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=96.60 E-value=0.016 Score=59.20 Aligned_cols=27 Identities=30% Similarity=0.305 Sum_probs=23.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhh
Q 010355 169 DVHMIGAYGMAGVGKTMLVKEVARQAK 195 (512)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 195 (512)
.+.++.++|++|+||||++..++....
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~~l~ 124 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAYYLK 124 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHH
Confidence 457999999999999999999887754
No 272
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=96.59 E-value=0.0018 Score=54.36 Aligned_cols=22 Identities=45% Similarity=0.745 Sum_probs=20.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHhh
Q 010355 173 IGAYGMAGVGKTMLVKEVARQA 194 (512)
Q Consensus 173 i~I~G~gGiGKTtLa~~v~~~~ 194 (512)
|+|.|.+|+||||||+.+....
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999885
No 273
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.58 E-value=0.014 Score=56.09 Aligned_cols=88 Identities=19% Similarity=0.211 Sum_probs=49.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCC-CCHHHHHHHHHHHhCCCCCC----CCchHHH-HHHH
Q 010355 169 DVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQR-PDVKKIQGQIADKLGLKFYE----ESESGRA-RKLC 242 (512)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-~~~~~ll~~i~~~l~~~~~~----~~~~~~~-~~l~ 242 (512)
..+++.++|++|+||||++..++...... -..+.+++.... .....-+...+...+.+... .+..... ..+.
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~l~~~--g~~V~li~~D~~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~l~ 148 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANKLKKQ--GKSVLLAAGDTFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAIQ 148 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhc--CCEEEEEeCCCCCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHHH
Confidence 45899999999999999999998877532 235666665431 12233344455555544211 1111211 2222
Q ss_pred HHHhCCCeEEEEEeCCC
Q 010355 243 ERLKKEKKILVILDDIW 259 (512)
Q Consensus 243 ~~l~~~k~~LlVlDdv~ 259 (512)
.... ...=++++|-.-
T Consensus 149 ~~~~-~~~D~ViIDT~G 164 (272)
T TIGR00064 149 KAKA-RNIDVVLIDTAG 164 (272)
T ss_pred HHHH-CCCCEEEEeCCC
Confidence 2222 334578888764
No 274
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=96.57 E-value=0.012 Score=57.38 Aligned_cols=84 Identities=17% Similarity=0.240 Sum_probs=52.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCC------CCchHHHHHHHH
Q 010355 170 VHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIADKLGLKFYE------ESESGRARKLCE 243 (512)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~i~~~l~~~~~~------~~~~~~~~~l~~ 243 (512)
-+++-|+|+.|+||||||.+++...... -..++|+.....+++ ..+..+|.+... ....+.+..+..
T Consensus 53 G~ivEi~G~~ssGKttLaL~~ia~~q~~--g~~~a~ID~e~~ld~-----~~a~~lGvdl~rllv~~P~~~E~al~~~e~ 125 (322)
T PF00154_consen 53 GRIVEIYGPESSGKTTLALHAIAEAQKQ--GGICAFIDAEHALDP-----EYAESLGVDLDRLLVVQPDTGEQALWIAEQ 125 (322)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHT--T-EEEEEESSS---H-----HHHHHTT--GGGEEEEE-SSHHHHHHHHHH
T ss_pred CceEEEeCCCCCchhhhHHHHHHhhhcc--cceeEEecCcccchh-----hHHHhcCccccceEEecCCcHHHHHHHHHH
Confidence 4799999999999999999998876532 467889998876655 345556654332 222333333333
Q ss_pred HHhCCCeEEEEEeCCCC
Q 010355 244 RLKKEKKILVILDDIWT 260 (512)
Q Consensus 244 ~l~~~k~~LlVlDdv~~ 260 (512)
.++.+.--++|+|-|-.
T Consensus 126 lirsg~~~lVVvDSv~a 142 (322)
T PF00154_consen 126 LIRSGAVDLVVVDSVAA 142 (322)
T ss_dssp HHHTTSESEEEEE-CTT
T ss_pred HhhcccccEEEEecCcc
Confidence 44555566899998853
No 275
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=96.56 E-value=0.087 Score=57.89 Aligned_cols=60 Identities=12% Similarity=0.232 Sum_probs=42.4
Q ss_pred cccccchHHHHHHHHHhc--CCCceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCC
Q 010355 149 EAFESRMSTLNDVINALK--NPDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQ 210 (512)
Q Consensus 149 ~~~~gR~~~l~~l~~~L~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~ 210 (512)
..++|+...+..+.+.+. ......|.|+|..|+|||++|+.+++..... -...+.+++..
T Consensus 376 ~~liG~S~~~~~~~~~~~~~a~~~~pVLI~GE~GTGK~~lA~~ih~~s~r~--~~~~v~i~c~~ 437 (686)
T PRK15429 376 GEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRN--NRRMVKMNCAA 437 (686)
T ss_pred cceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhcCCC--CCCeEEEeccc
Confidence 468899888888766554 2344578899999999999999998765421 23445555554
No 276
>CHL00206 ycf2 Ycf2; Provisional
Probab=96.56 E-value=0.05 Score=63.80 Aligned_cols=28 Identities=29% Similarity=0.331 Sum_probs=24.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhhh
Q 010355 169 DVHMIGAYGMAGVGKTMLVKEVARQAKA 196 (512)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 196 (512)
..+-|.++|++|+|||.||++++....+
T Consensus 1629 pPKGILLiGPPGTGKTlLAKALA~es~V 1656 (2281)
T CHL00206 1629 PSRGILVIGSIGTGRSYLVKYLATNSYV 1656 (2281)
T ss_pred CCCceEEECCCCCCHHHHHHHHHHhcCC
Confidence 4567899999999999999999988653
No 277
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=96.56 E-value=0.017 Score=52.44 Aligned_cols=50 Identities=22% Similarity=0.351 Sum_probs=33.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhhhhcCCC--------CeEEEEEeCCCCCHHHHHHHHH
Q 010355 171 HMIGAYGMAGVGKTMLVKEVARQAKADKLF--------DEVVYAEVSQRPDVKKIQGQIA 222 (512)
Q Consensus 171 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f--------~~~~wv~~~~~~~~~~ll~~i~ 222 (512)
.++.|.|++|+|||+++.+++........| ..++|++.... ...+.+.+.
T Consensus 33 ~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~--~~~~~~rl~ 90 (193)
T PF13481_consen 33 ELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDS--ESQIARRLR 90 (193)
T ss_dssp SEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS---HHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCC--HHHHHHHHH
Confidence 588999999999999999998877643322 36788877655 334444443
No 278
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=96.55 E-value=0.018 Score=54.95 Aligned_cols=88 Identities=19% Similarity=0.210 Sum_probs=54.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhC-CCCCCCCchH----HHHHHHH
Q 010355 169 DVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIADKLG-LKFYEESESG----RARKLCE 243 (512)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~i~~~l~-~~~~~~~~~~----~~~~l~~ 243 (512)
..+++=|+|+.|+||||||.+++-.... .-..++|++....+++..+..-....+. +-.......+ .+..+..
T Consensus 59 ~g~ItEiyG~~gsGKT~lal~~~~~aq~--~g~~a~fIDtE~~l~p~r~~~l~~~~~d~l~v~~~~~~e~q~~i~~~~~~ 136 (279)
T COG0468 59 RGRITEIYGPESSGKTTLALQLVANAQK--PGGKAAFIDTEHALDPERAKQLGVDLLDNLLVSQPDTGEQQLEIAEKLAR 136 (279)
T ss_pred cceEEEEecCCCcchhhHHHHHHHHhhc--CCCeEEEEeCCCCCCHHHHHHHHHhhhcceeEecCCCHHHHHHHHHHHHH
Confidence 3478889999999999999998876653 3458899999999988765543322121 1111111112 2222332
Q ss_pred HHhCCCeEEEEEeCCC
Q 010355 244 RLKKEKKILVILDDIW 259 (512)
Q Consensus 244 ~l~~~k~~LlVlDdv~ 259 (512)
...+ +--|||+|.+-
T Consensus 137 ~~~~-~i~LvVVDSva 151 (279)
T COG0468 137 SGAE-KIDLLVVDSVA 151 (279)
T ss_pred hccC-CCCEEEEecCc
Confidence 2222 36799999984
No 279
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.53 E-value=0.0099 Score=60.86 Aligned_cols=87 Identities=16% Similarity=0.144 Sum_probs=49.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCC-CHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHhCC
Q 010355 170 VHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRP-DVKKIQGQIADKLGLKFYEESESGRARKLCERLKKE 248 (512)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~ll~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 248 (512)
.++++++|++|+||||++..++...........+..|+..... ....-++.....++++................+.
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~~~-- 298 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQLR-- 298 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHHhC--
Confidence 3689999999999999999888766411123456666654321 1223344445556655433222222233333333
Q ss_pred CeEEEEEeCC
Q 010355 249 KKILVILDDI 258 (512)
Q Consensus 249 k~~LlVlDdv 258 (512)
..=+||+|..
T Consensus 299 ~~DlVlIDt~ 308 (424)
T PRK05703 299 DCDVILIDTA 308 (424)
T ss_pred CCCEEEEeCC
Confidence 3468889966
No 280
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=96.51 E-value=0.0023 Score=54.95 Aligned_cols=24 Identities=33% Similarity=0.490 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhh
Q 010355 172 MIGAYGMAGVGKTMLVKEVARQAK 195 (512)
Q Consensus 172 vi~I~G~gGiGKTtLa~~v~~~~~ 195 (512)
+|.++|++|+||||+|+.+.....
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~ 24 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLG 24 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHST
T ss_pred CEEEECCCCCCHHHHHHHHHHHCC
Confidence 588999999999999999986654
No 281
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=96.51 E-value=0.014 Score=51.53 Aligned_cols=25 Identities=36% Similarity=0.446 Sum_probs=22.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhh
Q 010355 170 VHMIGAYGMAGVGKTMLVKEVARQA 194 (512)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~v~~~~ 194 (512)
..+++|.|++|+|||||++.+....
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhc
Confidence 3678999999999999999998876
No 282
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=96.50 E-value=0.005 Score=57.57 Aligned_cols=86 Identities=16% Similarity=0.226 Sum_probs=51.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCC-------------------
Q 010355 170 VHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIADKLGLKFY------------------- 230 (512)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~i~~~l~~~~~------------------- 230 (512)
..++.|.|.+|+|||+|+.+++.....+ .-..++|++... ++..+.+.+. .++....
T Consensus 19 gs~~li~G~~GsGKT~l~~q~l~~~~~~-~ge~vlyvs~ee--~~~~l~~~~~-s~g~d~~~~~~~g~l~~~d~~~~~~~ 94 (226)
T PF06745_consen 19 GSVVLISGPPGSGKTTLALQFLYNGLKN-FGEKVLYVSFEE--PPEELIENMK-SFGWDLEEYEDSGKLKIIDAFPERIG 94 (226)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHH-HT--EEEEESSS---HHHHHHHHH-TTTS-HHHHHHTTSEEEEESSGGGST
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHhhhh-cCCcEEEEEecC--CHHHHHHHHH-HcCCcHHHHhhcCCEEEEeccccccc
Confidence 4789999999999999999987654321 024577887654 3455555543 4442210
Q ss_pred --CCCchHHHHHHHHHHhCCCeEEEEEeCCC
Q 010355 231 --EESESGRARKLCERLKKEKKILVILDDIW 259 (512)
Q Consensus 231 --~~~~~~~~~~l~~~l~~~k~~LlVlDdv~ 259 (512)
..+.......+.+.+...+...+|+|.+.
T Consensus 95 ~~~~~~~~l~~~i~~~i~~~~~~~vVIDsls 125 (226)
T PF06745_consen 95 WSPNDLEELLSKIREAIEELKPDRVVIDSLS 125 (226)
T ss_dssp -TSCCHHHHHHHHHHHHHHHTSSEEEEETHH
T ss_pred ccccCHHHHHHHHHHHHHhcCCCEEEEECHH
Confidence 11223344555555554456899999874
No 283
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=96.50 E-value=0.0023 Score=58.29 Aligned_cols=25 Identities=40% Similarity=0.579 Sum_probs=23.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhhh
Q 010355 172 MIGAYGMAGVGKTMLVKEVARQAKA 196 (512)
Q Consensus 172 vi~I~G~gGiGKTtLa~~v~~~~~~ 196 (512)
+|+|.|++|+||||||+.+...+..
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~ 25 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNK 25 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTT
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCc
Confidence 6999999999999999999998864
No 284
>PRK05439 pantothenate kinase; Provisional
Probab=96.48 E-value=0.032 Score=54.30 Aligned_cols=28 Identities=21% Similarity=0.259 Sum_probs=24.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHhhh
Q 010355 168 PDVHMIGAYGMAGVGKTMLVKEVARQAK 195 (512)
Q Consensus 168 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 195 (512)
...-+|+|.|.+|+||||+|+.+.....
T Consensus 84 ~~~~iIgIaG~~gsGKSTla~~L~~~l~ 111 (311)
T PRK05439 84 KVPFIIGIAGSVAVGKSTTARLLQALLS 111 (311)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4567999999999999999999988664
No 285
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.48 E-value=0.053 Score=53.19 Aligned_cols=27 Identities=33% Similarity=0.383 Sum_probs=24.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhh
Q 010355 169 DVHMIGAYGMAGVGKTMLVKEVARQAK 195 (512)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 195 (512)
..+-|.++|++|.|||-||++|+....
T Consensus 244 PWkgvLm~GPPGTGKTlLAKAvATEc~ 270 (491)
T KOG0738|consen 244 PWKGVLMVGPPGTGKTLLAKAVATECG 270 (491)
T ss_pred ccceeeeeCCCCCcHHHHHHHHHHhhc
Confidence 457899999999999999999998765
No 286
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.47 E-value=0.023 Score=57.69 Aligned_cols=87 Identities=20% Similarity=0.219 Sum_probs=47.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCC-CCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHhCC
Q 010355 170 VHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQ-RPDVKKIQGQIADKLGLKFYEESESGRARKLCERLKKE 248 (512)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~-~~~~~~ll~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 248 (512)
..+++++|+.|+||||++..++...........+..+.... .....+-+..+.+.++.+.............+..+.
T Consensus 191 g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al~~l~-- 268 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLHELR-- 268 (420)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHHHHhc--
Confidence 47999999999999999998887543222223344443322 223344455566666665443322222223333332
Q ss_pred CeEEEEEeCC
Q 010355 249 KKILVILDDI 258 (512)
Q Consensus 249 k~~LlVlDdv 258 (512)
..-++++|-.
T Consensus 269 ~~d~VLIDTa 278 (420)
T PRK14721 269 GKHMVLIDTV 278 (420)
T ss_pred CCCEEEecCC
Confidence 2345666654
No 287
>PRK08233 hypothetical protein; Provisional
Probab=96.46 E-value=0.0026 Score=57.14 Aligned_cols=26 Identities=27% Similarity=0.428 Sum_probs=23.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhhh
Q 010355 170 VHMIGAYGMAGVGKTMLVKEVARQAK 195 (512)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 195 (512)
..+|+|.|.+|+||||||..++....
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKLK 28 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhCC
Confidence 47899999999999999999998764
No 288
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=96.46 E-value=0.0027 Score=69.74 Aligned_cols=184 Identities=14% Similarity=0.152 Sum_probs=84.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhh-hhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCC------CC-CCchHHHHH
Q 010355 169 DVHMIGAYGMAGVGKTMLVKEVARQA-KADKLFDEVVYAEVSQRPDVKKIQGQIADKLGLKF------YE-ESESGRARK 240 (512)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~v~~~~-~~~~~f~~~~wv~~~~~~~~~~ll~~i~~~l~~~~------~~-~~~~~~~~~ 240 (512)
+.++++|+|+.|.|||||.+.+.-.. .... -++|.+..... ..++.++...++... .. .........
T Consensus 321 ~~~~liItGpNg~GKSTlLK~i~~~~l~aq~----G~~Vpa~~~~~-~~~~d~i~~~i~~~~si~~~LStfS~~m~~~~~ 395 (771)
T TIGR01069 321 EKRVLAITGPNTGGKTVTLKTLGLLALMFQS----GIPIPANEHSE-IPYFEEIFADIGDEQSIEQNLSTFSGHMKNISA 395 (771)
T ss_pred CceEEEEECCCCCCchHHHHHHHHHHHHHHh----CCCccCCcccc-ccchhheeeecChHhHHhhhhhHHHHHHHHHHH
Confidence 45789999999999999999887652 1100 01111111000 000111111111100 00 000111222
Q ss_pred HHHHHhCCCeEEEEEeCCCChh---hhhhh----CCCCCCCCeEEEEEeCCcchhccccCCc--cceecCCCCHHHHHHH
Q 010355 241 LCERLKKEKKILVILDDIWTNL---DLENV----GIPFGVRGCRVLMTARSQDVLSSKMDCQ--NNFLIGVLNESEARDL 311 (512)
Q Consensus 241 l~~~l~~~k~~LlVlDdv~~~~---~~~~l----~~~~~~~gs~iivTtR~~~v~~~~~~~~--~~~~l~~L~~~ea~~L 311 (512)
+...+ ..+-|++||...... ....+ ...+...|+.+|+||....+........ ....+. ++.+ ...
T Consensus 396 il~~~--~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~~~g~~viitTH~~eL~~~~~~~~~v~~~~~~-~d~~-~l~- 470 (771)
T TIGR01069 396 ILSKT--TENSLVLFDELGAGTDPDEGSALAISILEYLLKQNAQVLITTHYKELKALMYNNEGVENASVL-FDEE-TLS- 470 (771)
T ss_pred HHHhc--CCCcEEEecCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECChHHHHHHhcCCCCeEEeEEE-EcCC-CCc-
Confidence 22222 368999999985431 11111 1111245788999999876532111111 111111 1111 100
Q ss_pred HHHHhCCCCCCchhHHHHHHHHHHcCCChhHHHHHHHHhccCCHHHHHHHHHHhc
Q 010355 312 FKKLVGDKIENNDLKSLAMNIVKACRGLPIAIVTIARALRNKNTFEWKSALRELT 366 (512)
Q Consensus 312 f~~~~~~~~~~~~~~~~~~~I~~~~~GlPLai~~ia~~L~~~~~~~w~~~l~~l~ 366 (512)
|...+-...+. ...+-.|++++ |+|-.|..-|..+.......+..++..|.
T Consensus 471 p~Ykl~~G~~g---~S~a~~iA~~~-Glp~~ii~~A~~~~~~~~~~~~~li~~L~ 521 (771)
T TIGR01069 471 PTYKLLKGIPG---ESYAFEIAQRY-GIPHFIIEQAKTFYGEFKEEINVLIEKLS 521 (771)
T ss_pred eEEEECCCCCC---CcHHHHHHHHh-CcCHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 01111111111 23466777776 89998888888877554445555555544
No 289
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=96.46 E-value=0.0046 Score=58.46 Aligned_cols=62 Identities=24% Similarity=0.384 Sum_probs=46.3
Q ss_pred HHHHHHhc--CCCceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCCCHHHHHHH
Q 010355 159 NDVINALK--NPDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQ 220 (512)
Q Consensus 159 ~~l~~~L~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~ 220 (512)
.+|+..+. .++..+|+|.|.||+|||||.-.+...+..+.+=-.++=|+-|.+++-..++-.
T Consensus 38 ~~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGD 101 (323)
T COG1703 38 RELLRALYPRTGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGD 101 (323)
T ss_pred HHHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCcccccc
Confidence 34555554 556789999999999999999999998876655556677777777765555544
No 290
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=96.45 E-value=0.0052 Score=53.28 Aligned_cols=36 Identities=28% Similarity=0.291 Sum_probs=28.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEE
Q 010355 170 VHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAE 207 (512)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~ 207 (512)
..+|.|+|.+|+||||||+.+...+... -..++++.
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~L~~~--g~~~~~LD 37 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERRLFAR--GIKVYLLD 37 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHHHT--TS-EEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHc--CCcEEEec
Confidence 3689999999999999999999998754 34555554
No 291
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=96.45 E-value=0.0051 Score=54.98 Aligned_cols=24 Identities=33% Similarity=0.468 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhh
Q 010355 172 MIGAYGMAGVGKTMLVKEVARQAK 195 (512)
Q Consensus 172 vi~I~G~gGiGKTtLa~~v~~~~~ 195 (512)
.|.|.|++|+||||+|+.+++...
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~ 25 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLG 25 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999999854
No 292
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=96.44 E-value=0.0027 Score=47.03 Aligned_cols=23 Identities=35% Similarity=0.540 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhh
Q 010355 172 MIGAYGMAGVGKTMLVKEVARQA 194 (512)
Q Consensus 172 vi~I~G~gGiGKTtLa~~v~~~~ 194 (512)
+|+|.|.+|+||||+++.+....
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999885
No 293
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=96.43 E-value=0.039 Score=58.01 Aligned_cols=172 Identities=23% Similarity=0.327 Sum_probs=89.0
Q ss_pred cccccchH---HHHHHHHHhcCCC---------ceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCCCHHH
Q 010355 149 EAFESRMS---TLNDVINALKNPD---------VHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKK 216 (512)
Q Consensus 149 ~~~~gR~~---~l~~l~~~L~~~~---------~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 216 (512)
...-|.++ ++.++++.|.++. ++-+.++|++|.|||.||++++....+- | .+.|... +.+
T Consensus 150 ~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VP--F-----f~iSGS~-FVe 221 (596)
T COG0465 150 ADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVP--F-----FSISGSD-FVE 221 (596)
T ss_pred hhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCC--c-----eeccchh-hhh
Confidence 34456654 5566667776432 4678899999999999999999887753 2 1222210 000
Q ss_pred HHHHHHHHhCCCCCCCCchHHHHHHHHHHhCCCeEEEEEeCCCCh----------------hhhhhhCCCC---C-CCCe
Q 010355 217 IQGQIADKLGLKFYEESESGRARKLCERLKKEKKILVILDDIWTN----------------LDLENVGIPF---G-VRGC 276 (512)
Q Consensus 217 ll~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~----------------~~~~~l~~~~---~-~~gs 276 (512)
+. .| -....+..++..-++.-+|+|++|.++.. ..++++..-. . +.|.
T Consensus 222 ----mf--VG------vGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~~gv 289 (596)
T COG0465 222 ----MF--VG------VGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGNEGV 289 (596)
T ss_pred ----hh--cC------CCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCCCCce
Confidence 00 01 11123445555555456899999987532 1233332111 1 2344
Q ss_pred EEEEEeCCcchh----ccccCCccceecCCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChhH
Q 010355 277 RVLMTARSQDVL----SSKMDCQNNFLIGVLNESEARDLFKKLVGDKIENNDLKSLAMNIVKACRGLPIA 342 (512)
Q Consensus 277 ~iivTtR~~~v~----~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~GlPLa 342 (512)
.||..|-...+. .+...-...+.++.-+-..-.+.++-++......+.. + ...|++.+-|.--|
T Consensus 290 iviaaTNRpdVlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~~~V-d-l~~iAr~tpGfsGA 357 (596)
T COG0465 290 IVIAATNRPDVLDPALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLAEDV-D-LKKIARGTPGFSGA 357 (596)
T ss_pred EEEecCCCcccchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCCCcC-C-HHHHhhhCCCcccc
Confidence 444434434343 1111223455555555566666666555332222211 1 22377888876543
No 294
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=96.41 E-value=0.0073 Score=56.30 Aligned_cols=61 Identities=20% Similarity=0.273 Sum_probs=38.0
Q ss_pred HHHHHHHhc--CCCceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCCCHHHHH
Q 010355 158 LNDVINALK--NPDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQ 218 (512)
Q Consensus 158 l~~l~~~L~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ll 218 (512)
...|+..+. ..+..+|+|.|+||+|||||+..+...+..+.+=-.++=|+-+.+++=..+|
T Consensus 15 ~~~ll~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlL 77 (266)
T PF03308_consen 15 ARELLKRLYPHTGRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALL 77 (266)
T ss_dssp HHHHHHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS
T ss_pred HHHHHHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCccc
Confidence 344444444 4467899999999999999999999888765444455566666666544443
No 295
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=96.41 E-value=0.012 Score=60.79 Aligned_cols=85 Identities=24% Similarity=0.322 Sum_probs=52.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCC--CchHHHHHHHHHHhC
Q 010355 170 VHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIADKLGLKFYEE--SESGRARKLCERLKK 247 (512)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~i~~~l~~~~~~~--~~~~~~~~l~~~l~~ 247 (512)
-.++.|.|.+|+|||||+.+++...... -..++|++... +..++... +..++...... ........+...+..
T Consensus 94 GsvilI~G~pGsGKTTL~lq~a~~~a~~--g~kvlYvs~EE--s~~qi~~r-a~rlg~~~~~l~~~~e~~~~~I~~~i~~ 168 (454)
T TIGR00416 94 GSLILIGGDPGIGKSTLLLQVACQLAKN--QMKVLYVSGEE--SLQQIKMR-AIRLGLPEPNLYVLSETNWEQICANIEE 168 (454)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHhc--CCcEEEEECcC--CHHHHHHH-HHHcCCChHHeEEcCCCCHHHHHHHHHh
Confidence 4789999999999999999998776532 23577887654 33333322 33454432110 001123455556655
Q ss_pred CCeEEEEEeCCC
Q 010355 248 EKKILVILDDIW 259 (512)
Q Consensus 248 ~k~~LlVlDdv~ 259 (512)
.+.-+||+|.+.
T Consensus 169 ~~~~~vVIDSIq 180 (454)
T TIGR00416 169 ENPQACVIDSIQ 180 (454)
T ss_pred cCCcEEEEecch
Confidence 567799999984
No 296
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=96.40 E-value=0.0066 Score=64.94 Aligned_cols=79 Identities=14% Similarity=0.142 Sum_probs=60.0
Q ss_pred ccCccccccchHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHH
Q 010355 145 IKGYEAFESRMSTLNDVINALKNPDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIADK 224 (512)
Q Consensus 145 ~~~~~~~~gR~~~l~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~i~~~ 224 (512)
+.....++|.+..+..|...+... +.+.|+|++|+||||+|+.++..... ..++..+|..- ...+...+++.++..
T Consensus 27 ~~~~~~vigq~~a~~~L~~~~~~~--~~~l~~G~~G~GKttla~~l~~~l~~-~~~~~~~~~~n-p~~~~~~~~~~v~~~ 102 (637)
T PRK13765 27 ERLIDQVIGQEHAVEVIKKAAKQR--RHVMMIGSPGTGKSMLAKAMAELLPK-EELQDILVYPN-PEDPNNPKIRTVPAG 102 (637)
T ss_pred cccHHHcCChHHHHHHHHHHHHhC--CeEEEECCCCCcHHHHHHHHHHHcCh-HhHHHheEeeC-CCcchHHHHHHHHHh
Confidence 345567889999888888777654 47899999999999999999987643 34577778544 445778888888877
Q ss_pred hCC
Q 010355 225 LGL 227 (512)
Q Consensus 225 l~~ 227 (512)
+|.
T Consensus 103 ~G~ 105 (637)
T PRK13765 103 KGK 105 (637)
T ss_pred cCH
Confidence 764
No 297
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=96.40 E-value=0.014 Score=63.36 Aligned_cols=83 Identities=18% Similarity=0.210 Sum_probs=56.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCC------CCchHHHHHHHH
Q 010355 170 VHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIADKLGLKFYE------ESESGRARKLCE 243 (512)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~i~~~l~~~~~~------~~~~~~~~~l~~ 243 (512)
.+++-|+|++|+|||||+.+++..... .-..++|+.....+.+ ..++++|..... .+.......+..
T Consensus 60 GsiteI~G~~GsGKTtLal~~~~~a~~--~G~~v~yId~E~t~~~-----~~A~~lGvDl~~llv~~~~~~E~~l~~i~~ 132 (790)
T PRK09519 60 GRVIEIYGPESSGKTTVALHAVANAQA--AGGVAAFIDAEHALDP-----DYAKKLGVDTDSLLVSQPDTGEQALEIADM 132 (790)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH--cCCcEEEECCccchhH-----HHHHHcCCChhHeEEecCCCHHHHHHHHHH
Confidence 578889999999999999887765442 2356789988777664 366777765321 122223333444
Q ss_pred HHhCCCeEEEEEeCCC
Q 010355 244 RLKKEKKILVILDDIW 259 (512)
Q Consensus 244 ~l~~~k~~LlVlDdv~ 259 (512)
.+..++.-|||+|.+.
T Consensus 133 lv~~~~~~LVVIDSI~ 148 (790)
T PRK09519 133 LIRSGALDIVVIDSVA 148 (790)
T ss_pred HhhcCCCeEEEEcchh
Confidence 4455677899999974
No 298
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=96.39 E-value=0.015 Score=55.13 Aligned_cols=29 Identities=31% Similarity=0.441 Sum_probs=25.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhhhc
Q 010355 169 DVHMIGAYGMAGVGKTMLVKEVARQAKAD 197 (512)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~ 197 (512)
.+..++|||++|.|||-||+.|+......
T Consensus 165 ~Pkg~ll~GppGtGKTlla~~Vaa~mg~n 193 (388)
T KOG0651|consen 165 PPKGLLLYGPPGTGKTLLARAVAATMGVN 193 (388)
T ss_pred CCceeEEeCCCCCchhHHHHHHHHhcCCc
Confidence 35788999999999999999999988753
No 299
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.38 E-value=0.021 Score=58.90 Aligned_cols=60 Identities=18% Similarity=0.162 Sum_probs=38.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCC-CCCHHHHHHHHHHHhCCCC
Q 010355 170 VHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQ-RPDVKKIQGQIADKLGLKF 229 (512)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~-~~~~~~ll~~i~~~l~~~~ 229 (512)
.++++++|+.|+||||++..++.....+.....+..+.... .....+-++...+.++.+.
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGVpv 316 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVPV 316 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHHHHHHHhCCCe
Confidence 37999999999999999999998764322122345555432 2234444555566666554
No 300
>PF13245 AAA_19: Part of AAA domain
Probab=96.37 E-value=0.0099 Score=44.90 Aligned_cols=26 Identities=23% Similarity=0.300 Sum_probs=18.9
Q ss_pred CceEEEEEcCCCCcHHHHH-HHHHHhh
Q 010355 169 DVHMIGAYGMAGVGKTMLV-KEVARQA 194 (512)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa-~~v~~~~ 194 (512)
+.+++.|.|++|.|||+++ ..+.+..
T Consensus 9 ~~~~~vv~g~pGtGKT~~~~~~i~~l~ 35 (76)
T PF13245_consen 9 GSPLFVVQGPPGTGKTTTLAARIAELL 35 (76)
T ss_pred hCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 3577888999999999554 4444444
No 301
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.37 E-value=0.032 Score=60.49 Aligned_cols=59 Identities=20% Similarity=0.207 Sum_probs=36.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCC-CCCHHHHHHHHHHHhCCC
Q 010355 170 VHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQ-RPDVKKIQGQIADKLGLK 228 (512)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~-~~~~~~ll~~i~~~l~~~ 228 (512)
.++++++|+.|+||||++..++...........+..+.... .....+-++.....++.+
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvp 244 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVP 244 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCC
Confidence 47999999999999999999887664221122444444322 122344455555555544
No 302
>PRK05480 uridine/cytidine kinase; Provisional
Probab=96.36 E-value=0.0037 Score=57.68 Aligned_cols=27 Identities=26% Similarity=0.386 Sum_probs=24.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHhh
Q 010355 168 PDVHMIGAYGMAGVGKTMLVKEVARQA 194 (512)
Q Consensus 168 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 194 (512)
.+..+|+|.|.+|+|||||++.++...
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 356799999999999999999999876
No 303
>PRK06762 hypothetical protein; Provisional
Probab=96.36 E-value=0.0035 Score=55.52 Aligned_cols=25 Identities=28% Similarity=0.432 Sum_probs=22.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhh
Q 010355 170 VHMIGAYGMAGVGKTMLVKEVARQA 194 (512)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~v~~~~ 194 (512)
..+|.|+|++|+||||+|+.++...
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3689999999999999999998876
No 304
>PTZ00301 uridine kinase; Provisional
Probab=96.35 E-value=0.0036 Score=57.58 Aligned_cols=26 Identities=27% Similarity=0.486 Sum_probs=23.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhhh
Q 010355 170 VHMIGAYGMAGVGKTMLVKEVARQAK 195 (512)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 195 (512)
..+|+|.|.+|+||||||+.+.....
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~l~ 28 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSELM 28 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHHHH
Confidence 47899999999999999999987764
No 305
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=96.35 E-value=0.012 Score=56.44 Aligned_cols=49 Identities=14% Similarity=0.205 Sum_probs=39.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCCCHHHHHHHH
Q 010355 169 DVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQI 221 (512)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~i 221 (512)
..+++.|+|.+|+|||+++.++...... ....++||+.... ...+++..
T Consensus 22 ~g~~~lI~G~pGsGKT~f~~qfl~~~~~--~ge~vlyvs~~e~--~~~l~~~~ 70 (260)
T COG0467 22 RGSVVLITGPPGTGKTIFALQFLYEGAR--EGEPVLYVSTEES--PEELLENA 70 (260)
T ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHHHh--cCCcEEEEEecCC--HHHHHHHH
Confidence 4589999999999999999999988774 3788999988764 44455444
No 306
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=96.30 E-value=0.2 Score=46.43 Aligned_cols=50 Identities=20% Similarity=0.357 Sum_probs=38.5
Q ss_pred cCccccccchHHHHHHHHHhc-------------CCCceEEEEEcCCCCcHHHHHHHHHHhhh
Q 010355 146 KGYEAFESRMSTLNDVINALK-------------NPDVHMIGAYGMAGVGKTMLVKEVARQAK 195 (512)
Q Consensus 146 ~~~~~~~gR~~~l~~l~~~L~-------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 195 (512)
..+..+-|-++.+++|++.+. -..++-+..+|++|.|||-+|++.+.+-.
T Consensus 168 E~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~ 230 (424)
T KOG0652|consen 168 EQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTN 230 (424)
T ss_pred ccccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhcc
Confidence 345567788888888888764 12456788999999999999999887654
No 307
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.29 E-value=0.0034 Score=60.29 Aligned_cols=86 Identities=21% Similarity=0.302 Sum_probs=46.8
Q ss_pred HHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCchHHHH
Q 010355 160 DVINALKNPDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIADKLGLKFYEESESGRAR 239 (512)
Q Consensus 160 ~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~i~~~l~~~~~~~~~~~~~~ 239 (512)
.+++.+...+ +-+.++|+.|+|||++++.+....... .| .+.-++.+...+...++..|-..+... ...
T Consensus 24 ~ll~~l~~~~-~pvLl~G~~GtGKT~li~~~l~~l~~~-~~-~~~~~~~s~~Tts~~~q~~ie~~l~k~-~~~------- 92 (272)
T PF12775_consen 24 YLLDLLLSNG-RPVLLVGPSGTGKTSLIQNFLSSLDSD-KY-LVITINFSAQTTSNQLQKIIESKLEKR-RGR------- 92 (272)
T ss_dssp HHHHHHHHCT-EEEEEESSTTSSHHHHHHHHHHCSTTC-CE-EEEEEES-TTHHHHHHHHCCCTTECEC-TTE-------
T ss_pred HHHHHHHHcC-CcEEEECCCCCchhHHHHhhhccCCcc-cc-ceeEeeccCCCCHHHHHHHHhhcEEcC-CCC-------
Confidence 3444444433 567899999999999999988765432 11 233455555444443332221111100 000
Q ss_pred HHHHHH--hCCCeEEEEEeCCCC
Q 010355 240 KLCERL--KKEKKILVILDDIWT 260 (512)
Q Consensus 240 ~l~~~l--~~~k~~LlVlDdv~~ 260 (512)
.+ ..+|++++++||+..
T Consensus 93 ----~~gP~~~k~lv~fiDDlN~ 111 (272)
T PF12775_consen 93 ----VYGPPGGKKLVLFIDDLNM 111 (272)
T ss_dssp ----EEEEESSSEEEEEEETTT-
T ss_pred ----CCCCCCCcEEEEEecccCC
Confidence 00 136899999999953
No 308
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=96.29 E-value=0.028 Score=53.95 Aligned_cols=94 Identities=12% Similarity=0.140 Sum_probs=53.5
Q ss_pred HHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCC-------CC
Q 010355 161 VINALKNPDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIADKLGLKFYE-------ES 233 (512)
Q Consensus 161 l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~i~~~l~~~~~~-------~~ 233 (512)
...++...+..+|.|.|.+|+|||||+..+....... . .++.+ .....+..+ ...+...+.+... ..
T Consensus 95 ~r~~~~~~~~~~v~l~G~pGsGKTTLl~~l~~~l~~~--~-~~~VI-~gD~~t~~D--a~rI~~~g~pvvqi~tG~~Chl 168 (290)
T PRK10463 95 NRARFAARKQLVLNLVSSPGSGKTTLLTETLMRLKDS--V-PCAVI-EGDQQTVND--AARIRATGTPAIQVNTGKGCHL 168 (290)
T ss_pred HHHHHHhcCCeEEEEECCCCCCHHHHHHHHHHHhccC--C-CEEEE-CCCcCcHHH--HHHHHhcCCcEEEecCCCCCcC
Confidence 3344556788999999999999999999999887532 2 22222 222222222 1223444433211 11
Q ss_pred chHHHHHHHHHHhCCCeEEEEEeCCCC
Q 010355 234 ESGRARKLCERLKKEKKILVILDDIWT 260 (512)
Q Consensus 234 ~~~~~~~l~~~l~~~k~~LlVlDdv~~ 260 (512)
....+...+..|.....-+||++++-+
T Consensus 169 ~a~mv~~Al~~L~~~~~d~liIEnvGn 195 (290)
T PRK10463 169 DAQMIADAAPRLPLDDNGILFIENVGN 195 (290)
T ss_pred cHHHHHHHHHHHhhcCCcEEEEECCCC
Confidence 223344445555444456888999864
No 309
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=96.28 E-value=0.016 Score=53.31 Aligned_cols=85 Identities=32% Similarity=0.533 Sum_probs=53.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCC-CCHHHHHHHHHHHhCCC-------CCCCCchH------
Q 010355 171 HMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQR-PDVKKIQGQIADKLGLK-------FYEESESG------ 236 (512)
Q Consensus 171 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-~~~~~ll~~i~~~l~~~-------~~~~~~~~------ 236 (512)
.-++|.|.+|+|||+|+..+++... -+.++++.+++. ....++++.+...-... ....+...
T Consensus 16 qr~~I~g~~g~GKt~Ll~~i~~~~~----~d~~V~~~iGer~~Ev~~~~~~~~~~~~~~~t~vv~~t~~~~~~~r~~~~~ 91 (215)
T PF00006_consen 16 QRIGIFGGAGVGKTVLLQEIANNQD----ADVVVYALIGERGREVTEFIEELKGEGALERTVVVAATSDEPPAARYRAPY 91 (215)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHCT----TTEEEEEEESECHHHHHHHHHHHHHTTGGGGEEEEEEETTS-HHHHHHHHH
T ss_pred CEEEEEcCcccccchhhHHHHhccc----ccceeeeeccccchhHHHHHHHHhhcccccccccccccchhhHHHHhhhhc
Confidence 6788999999999999999998875 345578888765 35555666554321111 11111111
Q ss_pred HHHHHHHHHh-CCCeEEEEEeCCC
Q 010355 237 RARKLCERLK-KEKKILVILDDIW 259 (512)
Q Consensus 237 ~~~~l~~~l~-~~k~~LlVlDdv~ 259 (512)
..-.+.+++. ++++.||++||+.
T Consensus 92 ~a~t~AEyfrd~G~dVlli~Dslt 115 (215)
T PF00006_consen 92 TALTIAEYFRDQGKDVLLIIDSLT 115 (215)
T ss_dssp HHHHHHHHHHHTTSEEEEEEETHH
T ss_pred cchhhhHHHhhcCCceeehhhhhH
Confidence 1223344443 5899999999984
No 310
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=96.26 E-value=0.0066 Score=63.49 Aligned_cols=59 Identities=20% Similarity=0.288 Sum_probs=43.8
Q ss_pred ccCccccccchHHHHHHHHHhc-----CCCceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEE
Q 010355 145 IKGYEAFESRMSTLNDVINALK-----NPDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAE 207 (512)
Q Consensus 145 ~~~~~~~~gR~~~l~~l~~~L~-----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~ 207 (512)
|.....+.-..+.++++..||. ....+++.++|++|+||||+++.+++... |..+=|.+
T Consensus 15 P~~~~eLavhkkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~elg----~~v~Ew~n 78 (519)
T PF03215_consen 15 PKTLDELAVHKKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKELG----FEVQEWIN 78 (519)
T ss_pred CCCHHHhhccHHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHhC----CeeEEecC
Confidence 3344455555677788888887 22357999999999999999999998865 56666754
No 311
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=96.25 E-value=0.036 Score=53.40 Aligned_cols=52 Identities=19% Similarity=0.144 Sum_probs=37.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHH
Q 010355 170 VHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIADK 224 (512)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~i~~~ 224 (512)
..++.|.|.+|+|||||+.+++...... +-..++|+++.. +..++...+...
T Consensus 30 g~~~~i~g~~G~GKT~l~~~~~~~~~~~-~g~~vl~iS~E~--~~~~~~~r~~~~ 81 (271)
T cd01122 30 GELIILTAGTGVGKTTFLREYALDLITQ-HGVRVGTISLEE--PVVRTARRLLGQ 81 (271)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHHh-cCceEEEEEccc--CHHHHHHHHHHH
Confidence 3588899999999999999998776422 234678887755 445666665544
No 312
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=96.24 E-value=0.0047 Score=56.94 Aligned_cols=28 Identities=32% Similarity=0.476 Sum_probs=24.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHhhh
Q 010355 168 PDVHMIGAYGMAGVGKTMLVKEVARQAK 195 (512)
Q Consensus 168 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 195 (512)
....+|+|+|++|+|||||++.++....
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3457999999999999999999998754
No 313
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=96.23 E-value=0.0089 Score=55.85 Aligned_cols=63 Identities=16% Similarity=0.161 Sum_probs=33.2
Q ss_pred HHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHhhhh-----cCCCCeEEEEEeCCCCCHHHHHHHHH
Q 010355 158 LNDVINALKNPDVHMIGAYGMAGVGKTMLVKEVARQAKA-----DKLFDEVVYAEVSQRPDVKKIQGQIA 222 (512)
Q Consensus 158 l~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~-----~~~f~~~~wv~~~~~~~~~~ll~~i~ 222 (512)
.+.+...+.... +..|+|++|.|||+++..+...... .......+-+....+..+..++..+.
T Consensus 7 ~~Ai~~~~~~~~--~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~ 74 (236)
T PF13086_consen 7 REAIQSALSSNG--ITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLK 74 (236)
T ss_dssp HHHHHHHCTSSE---EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCC--CEEEECCCCCChHHHHHHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHH
Confidence 344444444332 7899999999999877777766511 12233334444444444444444443
No 314
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=96.23 E-value=0.055 Score=44.81 Aligned_cols=44 Identities=16% Similarity=0.254 Sum_probs=30.8
Q ss_pred cccchHHHHHHH----HHhc---CCCceEEEEEcCCCCcHHHHHHHHHHhh
Q 010355 151 FESRMSTLNDVI----NALK---NPDVHMIGAYGMAGVGKTMLVKEVARQA 194 (512)
Q Consensus 151 ~~gR~~~l~~l~----~~L~---~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 194 (512)
++|..-..+.|+ ..+. ..++-|++++|.+|+|||.+++.+++..
T Consensus 27 l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 27 LFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred ccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 445444444444 4444 2356788999999999999999998874
No 315
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=96.22 E-value=0.023 Score=53.20 Aligned_cols=24 Identities=25% Similarity=0.408 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhh
Q 010355 171 HMIGAYGMAGVGKTMLVKEVARQA 194 (512)
Q Consensus 171 ~vi~I~G~gGiGKTtLa~~v~~~~ 194 (512)
..++|+|+.|.|||||.+.+.--.
T Consensus 31 ~~~~iiGPNGaGKSTLlK~iLGll 54 (254)
T COG1121 31 EITALIGPNGAGKSTLLKAILGLL 54 (254)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 789999999999999999998744
No 316
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=96.22 E-value=0.015 Score=56.61 Aligned_cols=66 Identities=12% Similarity=0.129 Sum_probs=45.4
Q ss_pred cCccccccchHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCCCHHHHH
Q 010355 146 KGYEAFESRMSTLNDVINALKNPDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQ 218 (512)
Q Consensus 146 ~~~~~~~gR~~~l~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ll 218 (512)
...+.|+=.......++.++... +.|.|.|++|+||||+|++++...... .+.|++.......+++
T Consensus 42 ~~d~~y~f~~~~~~~vl~~l~~~--~~ilL~G~pGtGKTtla~~lA~~l~~~-----~~rV~~~~~l~~~Dli 107 (327)
T TIGR01650 42 DIDPAYLFDKATTKAICAGFAYD--RRVMVQGYHGTGKSTHIEQIAARLNWP-----CVRVNLDSHVSRIDLV 107 (327)
T ss_pred CCCCCccCCHHHHHHHHHHHhcC--CcEEEEeCCCChHHHHHHHHHHHHCCC-----eEEEEecCCCChhhcC
Confidence 33445666666677788777643 569999999999999999999987621 2355555555444433
No 317
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=96.22 E-value=0.0036 Score=50.98 Aligned_cols=24 Identities=42% Similarity=0.652 Sum_probs=20.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHhhhh
Q 010355 173 IGAYGMAGVGKTMLVKEVARQAKA 196 (512)
Q Consensus 173 i~I~G~gGiGKTtLa~~v~~~~~~ 196 (512)
|.|+|.+|+|||+||..++.....
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~ 24 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLK 24 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHH
Confidence 568999999999999998887653
No 318
>PRK03839 putative kinase; Provisional
Probab=96.22 E-value=0.0042 Score=55.84 Aligned_cols=24 Identities=38% Similarity=0.519 Sum_probs=21.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhh
Q 010355 172 MIGAYGMAGVGKTMLVKEVARQAK 195 (512)
Q Consensus 172 vi~I~G~gGiGKTtLa~~v~~~~~ 195 (512)
.|.|.|++|+||||+++.+++...
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~ 25 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLG 25 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 488999999999999999999875
No 319
>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots. Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].
Probab=96.21 E-value=0.066 Score=45.98 Aligned_cols=110 Identities=15% Similarity=0.186 Sum_probs=71.5
Q ss_pred hhhH-HHHHHHHHHHHHhhhhhhhcchhchHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHH
Q 010355 2 VEIA-VAIAVKVAECLVHPIIHPFAYCYNYKSNLEKLKNEVQKLRGAKESVQQKIDDAKRSGEDIEQRVENWLITADEIL 80 (512)
Q Consensus 2 ae~~-~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~~l~~i~~~l~~a~~~~~~~~~~~~~wl~~vr~~~ 80 (512)
|+++ .++++.+++.++..+.+....... .+.-++.|..++.+|..++.+.+..+...+...+.-+.++.+..
T Consensus 3 ~eL~~gaalG~~~~eLlk~v~~~~~k~~~-------fk~~l~~L~sTl~~i~P~i~eI~~~~~eld~~~~ee~e~L~~~L 75 (147)
T PF05659_consen 3 AELVGGAALGAVFGELLKAVIDASKKSLS-------FKSILKRLESTLESIIPIIKEIDKLNVELDRPRQEEIERLKELL 75 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------hhhHHHHHHHHHHHhhhHHHHHHHHhhhcCCchhHHHHHHHHHH
Confidence 3444 345556666555555555544333 44455666666677777777766655444555577788889999
Q ss_pred HHHHHHhcccccccccCCCChhHhhhHHHHHHHHHHHHHHH
Q 010355 81 DAAARIIEGTEDTTNRLCPNLNTRYQVSKKAAREVKAAAEL 121 (512)
Q Consensus 81 ~d~ed~ld~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~i 121 (512)
.++..++..+..-. ++++...++.+++|+++.+.+...
T Consensus 76 ~~g~~LV~k~sk~~---r~n~~kk~~y~~Ki~~le~~l~~f 113 (147)
T PF05659_consen 76 EKGKELVEKCSKVR---RWNLYKKPRYARKIEELEESLRRF 113 (147)
T ss_pred HHHHHHHHHhcccc---HHHHHhhHhHHHHHHHHHHHHHHH
Confidence 99999998765433 234556677788898888887665
No 320
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=96.21 E-value=0.021 Score=54.25 Aligned_cols=99 Identities=22% Similarity=0.241 Sum_probs=62.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhhh--cCCCCeEEEEEeCCCC-CHHHHHHHHHHHhCCCC-------CCCCch---
Q 010355 169 DVHMIGAYGMAGVGKTMLVKEVARQAKA--DKLFDEVVYAEVSQRP-DVKKIQGQIADKLGLKF-------YEESES--- 235 (512)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~--~~~f~~~~wv~~~~~~-~~~~ll~~i~~~l~~~~-------~~~~~~--- 235 (512)
.-.-++|.|-+|+|||+|+..++++... +..-+.++++-+++.. ...+++..+...-.+.. ...+..
T Consensus 68 ~GQR~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~IGeR~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~~r~ 147 (276)
T cd01135 68 RGQKIPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFAAMGITMEDARFFKDDFEETGALERVVLFLNLANDPTIERI 147 (276)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHhhhccccCCCCEEEEEEeccccHHHHHHHHHhhhcCCcceEEEEEecCCCCHHHHH
Confidence 3456799999999999999998877541 1224678888887765 55666666654322211 111111
Q ss_pred ---HHHHHHHHHHhC--CCeEEEEEeCCCCh-hhhhhh
Q 010355 236 ---GRARKLCERLKK--EKKILVILDDIWTN-LDLENV 267 (512)
Q Consensus 236 ---~~~~~l~~~l~~--~k~~LlVlDdv~~~-~~~~~l 267 (512)
.....+.++++. ++++||++||+... .....+
T Consensus 148 ~a~~~a~aiAEyfrd~~g~~VLl~~D~ltr~A~A~rEi 185 (276)
T cd01135 148 ITPRMALTTAEYLAYEKGKHVLVILTDMTNYAEALREI 185 (276)
T ss_pred HHHHHHHHHHHHHHhccCCeEEEEEcChhHHHHHHHHH
Confidence 123356666653 69999999999643 334444
No 321
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=96.19 E-value=0.0046 Score=55.85 Aligned_cols=26 Identities=19% Similarity=0.275 Sum_probs=23.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhh
Q 010355 169 DVHMIGAYGMAGVGKTMLVKEVARQA 194 (512)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 194 (512)
..++|+|.|++|+||||+++.++...
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 45789999999999999999998765
No 322
>PRK01184 hypothetical protein; Provisional
Probab=96.16 E-value=0.037 Score=49.84 Aligned_cols=21 Identities=48% Similarity=0.803 Sum_probs=17.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHH
Q 010355 171 HMIGAYGMAGVGKTMLVKEVAR 192 (512)
Q Consensus 171 ~vi~I~G~gGiGKTtLa~~v~~ 192 (512)
.+|+|+|++|+||||+++ ++.
T Consensus 2 ~~i~l~G~~GsGKsT~a~-~~~ 22 (184)
T PRK01184 2 KIIGVVGMPGSGKGEFSK-IAR 22 (184)
T ss_pred cEEEEECCCCCCHHHHHH-HHH
Confidence 479999999999999987 444
No 323
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.15 E-value=0.0087 Score=52.83 Aligned_cols=110 Identities=16% Similarity=0.209 Sum_probs=57.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCC--CCHHHHHHHHHHHhCCCCCCCCch-HHHHHHHHHHh
Q 010355 170 VHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQR--PDVKKIQGQIADKLGLKFYEESES-GRARKLCERLK 246 (512)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~--~~~~~ll~~i~~~l~~~~~~~~~~-~~~~~l~~~l~ 246 (512)
-.+++|.|+.|+|||||.+.++.... ...+.+++.-... .+.....+ ..++.-.. .+.. ...-.+...+.
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~i~G~~~---~~~G~v~~~g~~~~~~~~~~~~~---~~i~~~~q-LS~G~~qrl~laral~ 98 (163)
T cd03216 26 GEVHALLGENGAGKSTLMKILSGLYK---PDSGEILVDGKEVSFASPRDARR---AGIAMVYQ-LSVGERQMVEIARALA 98 (163)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEECCEECCcCCHHHHHh---cCeEEEEe-cCHHHHHHHHHHHHHh
Confidence 46899999999999999999987643 2445555432111 11111111 11211111 1211 12223444454
Q ss_pred CCCeEEEEEeCCCChhh---hhhh---CCCCCCCCeEEEEEeCCcch
Q 010355 247 KEKKILVILDDIWTNLD---LENV---GIPFGVRGCRVLMTARSQDV 287 (512)
Q Consensus 247 ~~k~~LlVlDdv~~~~~---~~~l---~~~~~~~gs~iivTtR~~~v 287 (512)
. ++-+|++|+.....+ ...+ ...+...+..||++|.+...
T Consensus 99 ~-~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~ 144 (163)
T cd03216 99 R-NARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDE 144 (163)
T ss_pred c-CCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence 4 678899998754321 1111 11111346678888887653
No 324
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=96.15 E-value=0.02 Score=53.37 Aligned_cols=47 Identities=23% Similarity=0.328 Sum_probs=34.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCCCHHHHHHH
Q 010355 170 VHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQ 220 (512)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~ 220 (512)
..++.|.|.+|+|||+++.+++.....+ -..++|++... ++..+...
T Consensus 16 g~~~li~G~~G~GKt~~~~~~~~~~~~~--g~~~~y~s~e~--~~~~l~~~ 62 (224)
T TIGR03880 16 GHVIVVIGEYGTGKTTFSLQFLYQGLKN--GEKAMYISLEE--REERILGY 62 (224)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhC--CCeEEEEECCC--CHHHHHHH
Confidence 4789999999999999999998765422 35677887765 34454444
No 325
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=96.12 E-value=0.012 Score=57.65 Aligned_cols=49 Identities=16% Similarity=0.198 Sum_probs=37.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCCCHHHHHHH
Q 010355 170 VHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQ 220 (512)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~ 220 (512)
.+++.+.|.||+||||+|.+.+-..... ...++-|+..+..++.+++..
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~~lA~~--g~kvLlvStDPAhsL~d~f~~ 50 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAVKLAES--GKKVLLVSTDPAHSLGDVFDL 50 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHHHHHHc--CCcEEEEEeCCCCchHhhhcc
Confidence 4789999999999999999987776643 345777777777777666654
No 326
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=96.11 E-value=0.0065 Score=56.47 Aligned_cols=63 Identities=21% Similarity=0.226 Sum_probs=40.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEE-------EeCCCCCHHHH--HHHHHHHhCCCCCC
Q 010355 169 DVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYA-------EVSQRPDVKKI--QGQIADKLGLKFYE 231 (512)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv-------~~~~~~~~~~l--l~~i~~~l~~~~~~ 231 (512)
+..+|.++||+|+||||..++++.....+.....++-+ ..+.+.++++. ++...++.++.+..
T Consensus 18 ~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNG 89 (366)
T KOG1532|consen 18 RPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNG 89 (366)
T ss_pred CCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCc
Confidence 46788899999999999999999887755333333322 11223344443 34567776665443
No 327
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.08 E-value=0.02 Score=51.16 Aligned_cols=24 Identities=29% Similarity=0.331 Sum_probs=20.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHH
Q 010355 169 DVHMIGAYGMAGVGKTMLVKEVAR 192 (512)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~v~~ 192 (512)
.-.+++|+|+.|+|||||.+.+..
T Consensus 20 ~G~~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 20 LNVLVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhh
Confidence 346899999999999999998863
No 328
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=96.06 E-value=0.061 Score=50.66 Aligned_cols=91 Identities=26% Similarity=0.372 Sum_probs=57.9
Q ss_pred ccccccchHHHHHHHHHhc-------------CCCceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCCCH
Q 010355 148 YEAFESRMSTLNDVINALK-------------NPDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDV 214 (512)
Q Consensus 148 ~~~~~gR~~~l~~l~~~L~-------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~ 214 (512)
+..+-|-+..+++|.+... -..++-|.++|.+|.|||-||++|+++-.. .|-.++
T Consensus 184 y~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSA--TFlRvv---------- 251 (440)
T KOG0726|consen 184 YADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSA--TFLRVV---------- 251 (440)
T ss_pred hcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccch--hhhhhh----------
Confidence 4455677888888877654 123567789999999999999999998663 232211
Q ss_pred HHHHHHHHH-HhCCCCCCCCchHHHHHHHHHHhCCCeEEEEEeCCC
Q 010355 215 KKIQGQIAD-KLGLKFYEESESGRARKLCERLKKEKKILVILDDIW 259 (512)
Q Consensus 215 ~~ll~~i~~-~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~ 259 (512)
-..+++ .+| ....++..+++.....-+.++++|.+.
T Consensus 252 ---GseLiQkylG------dGpklvRqlF~vA~e~apSIvFiDEId 288 (440)
T KOG0726|consen 252 ---GSELIQKYLG------DGPKLVRELFRVAEEHAPSIVFIDEID 288 (440)
T ss_pred ---hHHHHHHHhc------cchHHHHHHHHHHHhcCCceEEeehhh
Confidence 112222 222 223345556655555678888889874
No 329
>PRK04040 adenylate kinase; Provisional
Probab=96.06 E-value=0.0058 Score=55.28 Aligned_cols=26 Identities=27% Similarity=0.519 Sum_probs=23.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhhh
Q 010355 170 VHMIGAYGMAGVGKTMLVKEVARQAK 195 (512)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 195 (512)
..+|+|+|++|+||||+++.+.....
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l~ 27 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKLK 27 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHhc
Confidence 36899999999999999999998764
No 330
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=96.06 E-value=0.063 Score=58.96 Aligned_cols=102 Identities=18% Similarity=0.134 Sum_probs=64.0
Q ss_pred ccccchHHHHHHHHHhcC------C--CceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCCCHHHHHHHH
Q 010355 150 AFESRMSTLNDVINALKN------P--DVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQI 221 (512)
Q Consensus 150 ~~~gR~~~l~~l~~~L~~------~--~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~i 221 (512)
.++|.++.+..|.+.+.. . ...++.+.|+.|+|||-||++++...- +.....+-++.+.-. .
T Consensus 563 ~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~~~F--gse~~~IriDmse~~------e-- 632 (898)
T KOG1051|consen 563 RVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAEYVF--GSEENFIRLDMSEFQ------E-- 632 (898)
T ss_pred hccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHHHHc--CCccceEEechhhhh------h--
Confidence 345666666666666651 1 456788999999999999999998764 234455555554321 1
Q ss_pred HHHhCCCCCCCCchHHHHHHHHHHhCCCeEEEEEeCCCCh
Q 010355 222 ADKLGLKFYEESESGRARKLCERLKKEKKILVILDDIWTN 261 (512)
Q Consensus 222 ~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~ 261 (512)
...+...++.--..+....|.+.+++....+|+||+|...
T Consensus 633 vskligsp~gyvG~e~gg~LteavrrrP~sVVLfdeIEkA 672 (898)
T KOG1051|consen 633 VSKLIGSPPGYVGKEEGGQLTEAVKRRPYSVVLFEEIEKA 672 (898)
T ss_pred hhhccCCCcccccchhHHHHHHHHhcCCceEEEEechhhc
Confidence 2333222222223344557888888755568889999743
No 331
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.06 E-value=0.13 Score=54.97 Aligned_cols=166 Identities=12% Similarity=0.152 Sum_probs=88.7
Q ss_pred ccchHHHHHHHHHhcCC---------CceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCCCHHHHHHHHH
Q 010355 152 ESRMSTLNDVINALKNP---------DVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIA 222 (512)
Q Consensus 152 ~gR~~~l~~l~~~L~~~---------~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~i~ 222 (512)
.++...+..+...+... ...++.++|.+|+||||+++.++..... |+ +-+++ .++..+
T Consensus 404 ~~~~~~~~~l~~vl~p~~~~s~~~~~~~~~vLLhG~~g~GK~t~V~~vas~lg~--h~---~evdc------~el~~~-- 470 (953)
T KOG0736|consen 404 PGLEAKVLELVAVLSPQKQPSGALLTLNPSVLLHGPPGSGKTTVVRAVASELGL--HL---LEVDC------YELVAE-- 470 (953)
T ss_pred ccchHHHHHHHHHhCcccCcchhccccceEEEEeCCCCCChHHHHHHHHHHhCC--ce---EeccH------HHHhhc--
Confidence 35666666777777621 3468899999999999999999988763 22 11111 011000
Q ss_pred HHhCCCCCCCCchHHHHHHHHHHhCCCeEEEEEeCCCCh-------h------hhhhh-C---CCCCCCCeEEEEEeCCc
Q 010355 223 DKLGLKFYEESESGRARKLCERLKKEKKILVILDDIWTN-------L------DLENV-G---IPFGVRGCRVLMTARSQ 285 (512)
Q Consensus 223 ~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~-------~------~~~~l-~---~~~~~~gs~iivTtR~~ 285 (512)
............+.+.+.-.+.+|.|=|+.-. . .++.+ . .++..++..++.||.+.
T Consensus 471 -------s~~~~etkl~~~f~~a~~~~pavifl~~~dvl~id~dgged~rl~~~i~~~ls~e~~~~~~~~~ivv~t~~s~ 543 (953)
T KOG0736|consen 471 -------SASHTETKLQAIFSRARRCSPAVLFLRNLDVLGIDQDGGEDARLLKVIRHLLSNEDFKFSCPPVIVVATTSSI 543 (953)
T ss_pred -------ccchhHHHHHHHHHHHhhcCceEEEEeccceeeecCCCchhHHHHHHHHHHHhcccccCCCCceEEEEecccc
Confidence 00111112233333333345667766665311 1 11111 1 22235566666666543
Q ss_pred c-hhcccc-CCccceecCCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCC
Q 010355 286 D-VLSSKM-DCQNNFLIGVLNESEARDLFKKLVGDKIENNDLKSLAMNIVKACRGL 339 (512)
Q Consensus 286 ~-v~~~~~-~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~Gl 339 (512)
. +..... ...+.+.+..|+.++-.++|+-++........ ...+.++++|.|.
T Consensus 544 ~~lp~~i~~~f~~ei~~~~lse~qRl~iLq~y~~~~~~n~~--v~~k~~a~~t~gf 597 (953)
T KOG0736|consen 544 EDLPADIQSLFLHEIEVPALSEEQRLEILQWYLNHLPLNQD--VNLKQLARKTSGF 597 (953)
T ss_pred ccCCHHHHHhhhhhccCCCCCHHHHHHHHHHHHhccccchH--HHHHHHHHhcCCC
Confidence 3 221111 12367889999999999999988754332221 2234566666554
No 332
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=96.06 E-value=0.014 Score=53.39 Aligned_cols=51 Identities=20% Similarity=0.288 Sum_probs=35.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCC
Q 010355 172 MIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIADKLGLKFY 230 (512)
Q Consensus 172 vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~i~~~l~~~~~ 230 (512)
.|+|+|-||+||||+|..++.....++. ..++-|+...++++ ..+||...+
T Consensus 2 kIaI~GKGG~GKTtiaalll~~l~~~~~-~~VLvVDaDpd~nL-------~~~LGve~~ 52 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKRLLSKGG-YNVLVVDADPDSNL-------PEALGVEEP 52 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHHHHhcCC-ceEEEEeCCCCCCh-------HHhcCCCCC
Confidence 5899999999999999996666554332 34556676666554 345666544
No 333
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=96.06 E-value=0.026 Score=51.33 Aligned_cols=116 Identities=21% Similarity=0.205 Sum_probs=65.3
Q ss_pred HHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHhhhhc-CCCCe--EEEEEeCCCCCHHHHHHHHHHHhC--------CCC
Q 010355 161 VINALKNPDVHMIGAYGMAGVGKTMLVKEVARQAKAD-KLFDE--VVYAEVSQRPDVKKIQGQIADKLG--------LKF 229 (512)
Q Consensus 161 l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~~f~~--~~wv~~~~~~~~~~ll~~i~~~l~--------~~~ 229 (512)
++..|-..+..-..|.|++|+|||||.+.+++..... +.|-. +.-|+-+. .|+..+. ...
T Consensus 128 li~~ly~~g~lntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDers---------EIag~~~gvpq~~~g~R~ 198 (308)
T COG3854 128 LIKDLYQNGWLNTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERS---------EIAGCLNGVPQHGRGRRM 198 (308)
T ss_pred HHHHHHhcCceeeEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccc---------hhhccccCCchhhhhhhh
Confidence 4555555566667899999999999999999877643 23422 22232221 1222111 000
Q ss_pred CCCCchHHHHHHHHHHhCCCeEEEEEeCCCChhhhhhhCCCCCCCCeEEEEEeCCcc
Q 010355 230 YEESESGRARKLCERLKKEKKILVILDDIWTNLDLENVGIPFGVRGCRVLMTARSQD 286 (512)
Q Consensus 230 ~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~~~~l~~~~~~~gs~iivTtR~~~ 286 (512)
+-...-....-+...+++-.+=+||+|.+-...+...+... ...|.++|.|..--.
T Consensus 199 dVld~cpk~~gmmmaIrsm~PEViIvDEIGt~~d~~A~~ta-~~~GVkli~TaHG~~ 254 (308)
T COG3854 199 DVLDPCPKAEGMMMAIRSMSPEVIIVDEIGTEEDALAILTA-LHAGVKLITTAHGNG 254 (308)
T ss_pred hhcccchHHHHHHHHHHhcCCcEEEEeccccHHHHHHHHHH-HhcCcEEEEeecccc
Confidence 10111112333444555567889999999876554444221 156888888876543
No 334
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=96.06 E-value=0.024 Score=62.64 Aligned_cols=179 Identities=19% Similarity=0.239 Sum_probs=86.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhh--hcCCC-----------CeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCch
Q 010355 169 DVHMIGAYGMAGVGKTMLVKEVARQAK--ADKLF-----------DEVVYAEVSQRPDVKKIQGQIADKLGLKFYEESES 235 (512)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~v~~~~~--~~~~f-----------~~~~wv~~~~~~~~~~ll~~i~~~l~~~~~~~~~~ 235 (512)
+.+++.|+|+.+.||||+.+.+.-..- ....| -..++..++...++..-+..+... .
T Consensus 326 ~~~~~iITGpN~gGKTt~lktigl~~~maq~G~~vpa~~~~~i~~~~~i~~~ig~~~si~~~lStfS~~----------m 395 (782)
T PRK00409 326 DKTVLVITGPNTGGKTVTLKTLGLAALMAKSGLPIPANEPSEIPVFKEIFADIGDEQSIEQSLSTFSGH----------M 395 (782)
T ss_pred CceEEEEECCCCCCcHHHHHHHHHHHHHHHhCCCcccCCCccccccceEEEecCCccchhhchhHHHHH----------H
Confidence 457889999999999999988764311 00111 011223333222222111111110 0
Q ss_pred HHHHHHHHHHhCCCeEEEEEeCCCChhh---hhhh----CCCCCCCCeEEEEEeCCcchhccccCCcc--ceecCCCCHH
Q 010355 236 GRARKLCERLKKEKKILVILDDIWTNLD---LENV----GIPFGVRGCRVLMTARSQDVLSSKMDCQN--NFLIGVLNES 306 (512)
Q Consensus 236 ~~~~~l~~~l~~~k~~LlVlDdv~~~~~---~~~l----~~~~~~~gs~iivTtR~~~v~~~~~~~~~--~~~l~~L~~~ 306 (512)
.....+...+ ..+-|++||......+ -..+ ...+...|+.+|+||....+......... ...+. ++.
T Consensus 396 ~~~~~Il~~~--~~~sLvLlDE~~~GtDp~eg~ala~aile~l~~~~~~vIitTH~~el~~~~~~~~~v~~~~~~-~d~- 471 (782)
T PRK00409 396 TNIVRILEKA--DKNSLVLFDELGAGTDPDEGAALAISILEYLRKRGAKIIATTHYKELKALMYNREGVENASVE-FDE- 471 (782)
T ss_pred HHHHHHHHhC--CcCcEEEecCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECChHHHHHHHhcCCCeEEEEEE-Eec-
Confidence 1122233333 3678999999853211 1111 11112457899999998766432111111 11111 111
Q ss_pred HHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChhHHHHHHHHhccCCHHHHHHHHHHhc
Q 010355 307 EARDLFKKLVGDKIENNDLKSLAMNIVKACRGLPIAIVTIARALRNKNTFEWKSALRELT 366 (512)
Q Consensus 307 ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~GlPLai~~ia~~L~~~~~~~w~~~l~~l~ 366 (512)
+......+...+... ...+-.|++++ |+|-.|..-|..+.......+..++..|.
T Consensus 472 ~~l~~~Ykl~~G~~g----~S~a~~iA~~~-Glp~~ii~~A~~~~~~~~~~~~~li~~l~ 526 (782)
T PRK00409 472 ETLRPTYRLLIGIPG----KSNAFEIAKRL-GLPENIIEEAKKLIGEDKEKLNELIASLE 526 (782)
T ss_pred CcCcEEEEEeeCCCC----CcHHHHHHHHh-CcCHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 111100111111111 23466777776 88998888888877554555666655544
No 335
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=96.05 E-value=0.0092 Score=54.32 Aligned_cols=52 Identities=21% Similarity=0.289 Sum_probs=34.7
Q ss_pred hHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEe
Q 010355 155 MSTLNDVINALKNPDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEV 208 (512)
Q Consensus 155 ~~~l~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~ 208 (512)
..+-...++.|. ...++.+.|++|+|||.||...+.+.-....|+.++++.-
T Consensus 6 ~~~Q~~~~~al~--~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp 57 (205)
T PF02562_consen 6 NEEQKFALDALL--NNDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRP 57 (205)
T ss_dssp SHHHHHHHHHHH--H-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-
T ss_pred CHHHHHHHHHHH--hCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEec
Confidence 334444555555 4579999999999999999998876655577888887743
No 336
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=96.05 E-value=0.062 Score=46.81 Aligned_cols=114 Identities=21% Similarity=0.181 Sum_probs=60.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEe---CCCCCHHHHHHHHH----HHhCCC--CCCCCchH-----
Q 010355 171 HMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEV---SQRPDVKKIQGQIA----DKLGLK--FYEESESG----- 236 (512)
Q Consensus 171 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~---~~~~~~~~ll~~i~----~~l~~~--~~~~~~~~----- 236 (512)
..|-|++..|.||||+|...+.+.... -..+.++.. ........+++.+- .+.+.. ........
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~ra~~~--g~~v~~vQFlKg~~~~gE~~~l~~l~~v~~~~~g~~~~~~~~~~~~~~~~a 80 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLALRALGH--GYRVGVVQFLKGGWKYGELKALERLPNIEIHRMGRGFFWTTENDEEDIAAA 80 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHC--CCeEEEEEEeCCCCccCHHHHHHhCCCcEEEECCCCCccCCCChHHHHHHH
Confidence 568888889999999999888776532 234444433 22344444444441 001111 00011111
Q ss_pred --HHHHHHHHHhCCCeEEEEEeCCCChhhh-----hhhC--CCCCCCCeEEEEEeCCcc
Q 010355 237 --RARKLCERLKKEKKILVILDDIWTNLDL-----ENVG--IPFGVRGCRVLMTARSQD 286 (512)
Q Consensus 237 --~~~~l~~~l~~~k~~LlVlDdv~~~~~~-----~~l~--~~~~~~gs~iivTtR~~~ 286 (512)
......+.+..+.-=|||||.+-....+ +.+. +.....+..||+|.|+..
T Consensus 81 ~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p 139 (159)
T cd00561 81 AEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAP 139 (159)
T ss_pred HHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCC
Confidence 1233344444555569999998543211 1111 111245678999999865
No 337
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=96.04 E-value=0.0065 Score=55.32 Aligned_cols=28 Identities=39% Similarity=0.546 Sum_probs=25.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhhh
Q 010355 169 DVHMIGAYGMAGVGKTMLVKEVARQAKA 196 (512)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 196 (512)
++.+|+|.|.+|+||||+|+.++..+..
T Consensus 7 ~~iiIgIaG~SgSGKTTva~~l~~~~~~ 34 (218)
T COG0572 7 KVIIIGIAGGSGSGKTTVAKELSEQLGV 34 (218)
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHhCc
Confidence 4579999999999999999999998874
No 338
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=96.04 E-value=0.0057 Score=51.57 Aligned_cols=36 Identities=28% Similarity=0.345 Sum_probs=28.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCC
Q 010355 170 VHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRP 212 (512)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~ 212 (512)
.+-|.|.|-+|+|||||+.+++..... -|++++.-.
T Consensus 7 ~PNILvtGTPG~GKstl~~~lae~~~~-------~~i~isd~v 42 (176)
T KOG3347|consen 7 RPNILVTGTPGTGKSTLAERLAEKTGL-------EYIEISDLV 42 (176)
T ss_pred CCCEEEeCCCCCCchhHHHHHHHHhCC-------ceEehhhHH
Confidence 466899999999999999999976542 267766543
No 339
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=96.04 E-value=0.027 Score=55.11 Aligned_cols=31 Identities=23% Similarity=0.497 Sum_probs=26.2
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHHHhhhhc
Q 010355 167 NPDVHMIGAYGMAGVGKTMLVKEVARQAKAD 197 (512)
Q Consensus 167 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~ 197 (512)
.....+|+|.|++|+|||||+..+.......
T Consensus 31 ~~~~~~i~i~G~~G~GKttl~~~l~~~~~~~ 61 (300)
T TIGR00750 31 TGNAHRVGITGTPGAGKSTLLEALGMELRRR 61 (300)
T ss_pred cCCceEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 3467899999999999999999998876543
No 340
>PRK00131 aroK shikimate kinase; Reviewed
Probab=96.04 E-value=0.0062 Score=54.19 Aligned_cols=26 Identities=23% Similarity=0.291 Sum_probs=23.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhhh
Q 010355 170 VHMIGAYGMAGVGKTMLVKEVARQAK 195 (512)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 195 (512)
...|.|+|++|+||||+|+.++....
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~l~ 29 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKRLG 29 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999998874
No 341
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=96.02 E-value=0.013 Score=50.18 Aligned_cols=39 Identities=18% Similarity=0.297 Sum_probs=28.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCC
Q 010355 171 HMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQ 210 (512)
Q Consensus 171 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~ 210 (512)
++|.|+|..|+|||||++.+.+....+ .+...+..+...
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~~~-g~~v~~ik~~~~ 39 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELKRR-GYRVAVIKHTDH 39 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHT-T--EEEEEE-ST
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhHc-CCceEEEEEccC
Confidence 589999999999999999999998753 345555555544
No 342
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=96.02 E-value=0.0043 Score=51.42 Aligned_cols=24 Identities=42% Similarity=0.527 Sum_probs=18.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHhhhh
Q 010355 173 IGAYGMAGVGKTMLVKEVARQAKA 196 (512)
Q Consensus 173 i~I~G~gGiGKTtLa~~v~~~~~~ 196 (512)
|.|+|.+|+|||++|+.++.....
T Consensus 2 vLleg~PG~GKT~la~~lA~~~~~ 25 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSLGL 25 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHTT-
T ss_pred EeeECCCccHHHHHHHHHHHHcCC
Confidence 679999999999999999998763
No 343
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=96.01 E-value=0.02 Score=60.56 Aligned_cols=88 Identities=17% Similarity=0.162 Sum_probs=54.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCC-----------------
Q 010355 169 DVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIADKLGLKFYE----------------- 231 (512)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~i~~~l~~~~~~----------------- 231 (512)
.-+++.|.|.+|+|||+|+.+++.....+ +-..++|++... +..++.+.+. .++.....
T Consensus 30 ~Gs~~li~G~pGsGKT~l~~qf~~~~~~~-~ge~~lyis~ee--~~~~i~~~~~-~~g~d~~~~~~~g~l~~~~~~~~~~ 105 (509)
T PRK09302 30 KGRPTLVSGTAGTGKTLFALQFLVNGIKR-FDEPGVFVTFEE--SPEDIIRNVA-SFGWDLQKLIDEGKLFILDASPDPS 105 (509)
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHh-cCCCEEEEEccC--CHHHHHHHHH-HcCCCHHHHhhCCeEEEEecCcccc
Confidence 34789999999999999999987655422 135678887766 4455555543 23322100
Q ss_pred -------CCchHHHHHHHHHHhCCCeEEEEEeCCCC
Q 010355 232 -------ESESGRARKLCERLKKEKKILVILDDIWT 260 (512)
Q Consensus 232 -------~~~~~~~~~l~~~l~~~k~~LlVlDdv~~ 260 (512)
.........+...+...+.-.+|+|.+..
T Consensus 106 ~~~~~~~~~~~~l~~~l~~~i~~~~~~~vVIDSls~ 141 (509)
T PRK09302 106 EQEEAGEYDLEALFIRIEYAIDKIGAKRVVLDSIEA 141 (509)
T ss_pred cccccccccHHHHHHHHHHHHHhhCCCEEEECCHHH
Confidence 01122334455555444566799999853
No 344
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=96.00 E-value=0.0096 Score=53.66 Aligned_cols=37 Identities=27% Similarity=0.318 Sum_probs=29.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEe
Q 010355 170 VHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEV 208 (512)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~ 208 (512)
.++++|+|+.|+|||||+..++.... ..|..+++.+-
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~~--~~~~~~v~~TT 38 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEFP--DKFGRVVSHTT 38 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHST--TTEEEEEEEES
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcc--cccccceeecc
Confidence 47899999999999999999999876 44755555443
No 345
>PRK00625 shikimate kinase; Provisional
Probab=96.00 E-value=0.0059 Score=54.36 Aligned_cols=24 Identities=33% Similarity=0.336 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhh
Q 010355 172 MIGAYGMAGVGKTMLVKEVARQAK 195 (512)
Q Consensus 172 vi~I~G~gGiGKTtLa~~v~~~~~ 195 (512)
.|.|+|++|+||||+++.++....
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~ 25 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLS 25 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 488999999999999999988765
No 346
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=96.00 E-value=0.0058 Score=54.97 Aligned_cols=26 Identities=31% Similarity=0.439 Sum_probs=24.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhhh
Q 010355 170 VHMIGAYGMAGVGKTMLVKEVARQAK 195 (512)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 195 (512)
..+|+|-||=|+||||||+.+++...
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l~ 29 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHLG 29 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHhC
Confidence 47899999999999999999999876
No 347
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=95.98 E-value=0.031 Score=49.43 Aligned_cols=26 Identities=23% Similarity=0.221 Sum_probs=22.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhhh
Q 010355 170 VHMIGAYGMAGVGKTMLVKEVARQAK 195 (512)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 195 (512)
-.+++|.|+.|+|||||++.++....
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~G~~~ 52 (166)
T cd03223 27 GDRLLITGPSGTGKSSLFRALAGLWP 52 (166)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 46899999999999999999987654
No 348
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=95.97 E-value=0.011 Score=57.79 Aligned_cols=47 Identities=17% Similarity=0.215 Sum_probs=33.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCCCHHHHHH
Q 010355 171 HMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQG 219 (512)
Q Consensus 171 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ll~ 219 (512)
+++.+.|.||+||||+|...+-....+ -..++-++.....++.+++.
T Consensus 2 r~~~~~GKGGVGKTT~aaA~A~~~A~~--G~rtLlvS~Dpa~~L~d~l~ 48 (305)
T PF02374_consen 2 RILFFGGKGGVGKTTVAAALALALARR--GKRTLLVSTDPAHSLSDVLG 48 (305)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHT--TS-EEEEESSTTTHHHHHHT
T ss_pred eEEEEecCCCCCcHHHHHHHHHHHhhC--CCCeeEeecCCCccHHHHhC
Confidence 689999999999999998888776643 23466666666555555443
No 349
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=95.96 E-value=0.047 Score=49.02 Aligned_cols=115 Identities=21% Similarity=0.246 Sum_probs=60.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeC--CCCCHHHH------HHHHHHHhCCCCC------CCCc
Q 010355 169 DVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVS--QRPDVKKI------QGQIADKLGLKFY------EESE 234 (512)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~--~~~~~~~l------l~~i~~~l~~~~~------~~~~ 234 (512)
.-.+++|.|..|+|||||++.++.... ...+.+++.-. .......+ ..++++.+++... ..+.
T Consensus 24 ~G~~~~l~G~nGsGKStLl~~i~G~~~---~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~ 100 (180)
T cd03214 24 AGEIVGILGPNGAGKSTLLKTLAGLLK---PSSGEILLDGKDLASLSPKELARKIAYVPQALELLGLAHLADRPFNELSG 100 (180)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEECCcCCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCCH
Confidence 346899999999999999999987653 23444444211 11122121 1224555554311 1111
Q ss_pred hH-HHHHHHHHHhCCCeEEEEEeCCCChh---hhhhh---CCCCCCC-CeEEEEEeCCcch
Q 010355 235 SG-RARKLCERLKKEKKILVILDDIWTNL---DLENV---GIPFGVR-GCRVLMTARSQDV 287 (512)
Q Consensus 235 ~~-~~~~l~~~l~~~k~~LlVlDdv~~~~---~~~~l---~~~~~~~-gs~iivTtR~~~v 287 (512)
.+ ..-.+...+.. .+-++++|.-.... ....+ ...+... +..||++|.....
T Consensus 101 G~~qrl~laral~~-~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~ 160 (180)
T cd03214 101 GERQRVLLARALAQ-EPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNL 160 (180)
T ss_pred HHHHHHHHHHHHhc-CCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 11 22234445554 67899999875332 11111 1111122 5678888887654
No 350
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=95.96 E-value=0.042 Score=48.48 Aligned_cols=115 Identities=18% Similarity=0.107 Sum_probs=61.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEE---EEEeCCCCCHHHHHHHHH---HHhCCC--CCCCCch------
Q 010355 170 VHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVV---YAEVSQRPDVKKIQGQIA---DKLGLK--FYEESES------ 235 (512)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~---wv~~~~~~~~~~ll~~i~---~~l~~~--~~~~~~~------ 235 (512)
...|-|++..|.||||+|..++.+..... + .++ |+.-.........+..+. .+++.. ....+..
T Consensus 5 ~Gli~v~~g~GkGKtt~a~g~a~ra~~~g-~-~v~ivQFlKg~~~~GE~~~l~~~~~~~~~~g~g~~~~~~~~~~~~~~~ 82 (173)
T TIGR00708 5 RGIIIVHTGNGKGKTTAAFGMALRALGHG-K-KVGVIQFIKGAWPNGERAAFEPHGVEFQVMGTGFTWETQNREADTAIA 82 (173)
T ss_pred ccEEEEECCCCCChHHHHHHHHHHHHHCC-C-eEEEEEEecCCcccChHHHHHhcCcEEEECCCCCeecCCCcHHHHHHH
Confidence 36788888899999999999888765322 2 232 333332344444544430 011111 1111111
Q ss_pred -HHHHHHHHHHhCCCeEEEEEeCCCChhhh-----hhhC--CCCCCCCeEEEEEeCCcc
Q 010355 236 -GRARKLCERLKKEKKILVILDDIWTNLDL-----ENVG--IPFGVRGCRVLMTARSQD 286 (512)
Q Consensus 236 -~~~~~l~~~l~~~k~~LlVlDdv~~~~~~-----~~l~--~~~~~~gs~iivTtR~~~ 286 (512)
.......+.+..+.-=|||||.+.....+ +.+. +....++..||+|-|+..
T Consensus 83 ~~~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~p 141 (173)
T TIGR00708 83 KAAWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGCP 141 (173)
T ss_pred HHHHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCCC
Confidence 12334445555555569999998533221 1111 111246778999999874
No 351
>PRK13768 GTPase; Provisional
Probab=95.95 E-value=0.039 Score=52.51 Aligned_cols=36 Identities=25% Similarity=0.278 Sum_probs=27.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEe
Q 010355 171 HMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEV 208 (512)
Q Consensus 171 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~ 208 (512)
.+++|.|++|+||||++..+....... -..++.++.
T Consensus 3 ~~i~v~G~~G~GKTt~~~~~~~~l~~~--g~~v~~i~~ 38 (253)
T PRK13768 3 YIVFFLGTAGSGKTTLTKALSDWLEEQ--GYDVAIVNL 38 (253)
T ss_pred EEEEEECCCCccHHHHHHHHHHHHHhc--CCceEEEEC
Confidence 578999999999999999998877643 234444544
No 352
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=95.94 E-value=0.022 Score=57.18 Aligned_cols=47 Identities=30% Similarity=0.316 Sum_probs=35.1
Q ss_pred ccccchHHHHHHHHHhcCC--------------CceEEEEEcCCCCcHHHHHHHHHHhhhh
Q 010355 150 AFESRMSTLNDVINALKNP--------------DVHMIGAYGMAGVGKTMLVKEVARQAKA 196 (512)
Q Consensus 150 ~~~gR~~~l~~l~~~L~~~--------------~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 196 (512)
.++|.++..+.+.-.+.+. ..+.|.++|++|+|||+||+.++.....
T Consensus 13 ~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~ 73 (441)
T TIGR00390 13 YIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANA 73 (441)
T ss_pred hccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4677777776665444321 2367899999999999999999988753
No 353
>PLN02165 adenylate isopentenyltransferase
Probab=95.93 E-value=0.009 Score=58.32 Aligned_cols=30 Identities=23% Similarity=0.325 Sum_probs=25.8
Q ss_pred cCCCceEEEEEcCCCCcHHHHHHHHHHhhh
Q 010355 166 KNPDVHMIGAYGMAGVGKTMLVKEVARQAK 195 (512)
Q Consensus 166 ~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 195 (512)
.+....+|+|+|+.|+|||+||..++....
T Consensus 39 ~~~~g~iivIiGPTGSGKStLA~~LA~~l~ 68 (334)
T PLN02165 39 QNCKDKVVVIMGATGSGKSRLSVDLATRFP 68 (334)
T ss_pred cCCCCCEEEEECCCCCcHHHHHHHHHHHcC
Confidence 455567999999999999999999988754
No 354
>PF06524 NOA36: NOA36 protein; InterPro: IPR010531 This family consists of several NOA36 proteins which contain 29 highly conserved cysteine residues. The function of this protein is unknown.; GO: 0008270 zinc ion binding, 0005634 nucleus
Probab=95.93 E-value=0.011 Score=53.85 Aligned_cols=10 Identities=20% Similarity=0.378 Sum_probs=5.0
Q ss_pred CCCeEEEEEe
Q 010355 273 VRGCRVLMTA 282 (512)
Q Consensus 273 ~~gs~iivTt 282 (512)
.+|.||.--+
T Consensus 137 ~hGGrif~Cs 146 (314)
T PF06524_consen 137 DHGGRIFKCS 146 (314)
T ss_pred cCCCeEEEee
Confidence 3455555444
No 355
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=95.92 E-value=0.061 Score=50.76 Aligned_cols=51 Identities=12% Similarity=0.148 Sum_probs=36.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCCCHHHHHHHHHH
Q 010355 170 VHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIAD 223 (512)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~i~~ 223 (512)
-.++.|.|.+|+|||+++.+++...... +-..++|++... +...+...++.
T Consensus 13 G~l~lI~G~~G~GKT~~~~~~~~~~~~~-~g~~vly~s~E~--~~~~~~~r~~~ 63 (242)
T cd00984 13 GDLIIIAARPSMGKTAFALNIAENIAKK-QGKPVLFFSLEM--SKEQLLQRLLA 63 (242)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHh-CCCceEEEeCCC--CHHHHHHHHHH
Confidence 3689999999999999999988776542 134567776654 55666666653
No 356
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=95.92 E-value=0.028 Score=50.35 Aligned_cols=26 Identities=27% Similarity=0.387 Sum_probs=22.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhhh
Q 010355 170 VHMIGAYGMAGVGKTMLVKEVARQAK 195 (512)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 195 (512)
-.+++|.|+.|+|||||++.++....
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~~~ 53 (178)
T cd03247 28 GEKIALLGRSGSGKSTLLQLLTGDLK 53 (178)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccCC
Confidence 36899999999999999999987653
No 357
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=95.92 E-value=0.019 Score=57.03 Aligned_cols=64 Identities=20% Similarity=0.184 Sum_probs=47.9
Q ss_pred cccchHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCCCHHHHHHHH
Q 010355 151 FESRMSTLNDVINALKNPDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQI 221 (512)
Q Consensus 151 ~~gR~~~l~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~i 221 (512)
++|++..+..+...+..+ +.+.+.|.+|+|||+||+.++..... ..+++.+.....+.+++...
T Consensus 26 ~~g~~~~~~~~l~a~~~~--~~vll~G~PG~gKT~la~~lA~~l~~-----~~~~i~~t~~l~p~d~~G~~ 89 (329)
T COG0714 26 VVGDEEVIELALLALLAG--GHVLLEGPPGVGKTLLARALARALGL-----PFVRIQCTPDLLPSDLLGTY 89 (329)
T ss_pred eeccHHHHHHHHHHHHcC--CCEEEECCCCccHHHHHHHHHHHhCC-----CeEEEecCCCCCHHHhcCch
Confidence 778888888877766644 55789999999999999999988762 24566676666666655443
No 358
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.90 E-value=0.052 Score=52.97 Aligned_cols=27 Identities=44% Similarity=0.581 Sum_probs=24.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhh
Q 010355 169 DVHMIGAYGMAGVGKTMLVKEVARQAK 195 (512)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 195 (512)
..+-|.++|++|.|||-||++++....
T Consensus 126 p~kGiLL~GPpG~GKTmlAKA~Akeag 152 (386)
T KOG0737|consen 126 PPKGILLYGPPGTGKTMLAKAIAKEAG 152 (386)
T ss_pred CCccceecCCCCchHHHHHHHHHHHcC
Confidence 456788999999999999999999876
No 359
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=95.90 E-value=0.047 Score=55.71 Aligned_cols=92 Identities=20% Similarity=0.352 Sum_probs=59.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCC-CHHHHHHHHHHHhCCC-------CCCCCch-----
Q 010355 169 DVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRP-DVKKIQGQIADKLGLK-------FYEESES----- 235 (512)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~ll~~i~~~l~~~-------~~~~~~~----- 235 (512)
.-.-++|.|.+|+|||+|+.++++.... .+-+.++|+-++... ...+++..+...-.+. ....+..
T Consensus 137 kGQr~~Ifg~~G~GKt~l~~~~~~~~~~-~~~~v~V~~~iGeR~rEv~e~~~~~~~~~~l~rtvvv~~ts~~~~~~r~~~ 215 (449)
T TIGR03305 137 RGGKAGLFGGAGVGKTVLLTEMIHNMVG-QHQGVSIFCGIGERCREGEELYREMKEAGVLDNTVMVFGQMNEPPGARFRV 215 (449)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHHh-cCCCEEEEEEeccCcHHHHHHHHHHhhccccceEEEEEeCCCCCHHHHHHH
Confidence 3467899999999999999999887542 234677888887655 4556666665432211 1111111
Q ss_pred -HHHHHHHHHHh--CCCeEEEEEeCCCCh
Q 010355 236 -GRARKLCERLK--KEKKILVILDDIWTN 261 (512)
Q Consensus 236 -~~~~~l~~~l~--~~k~~LlVlDdv~~~ 261 (512)
.....+.++++ +++++||++||+...
T Consensus 216 ~~~a~tiAEyfrd~~G~~VLl~~DslTR~ 244 (449)
T TIGR03305 216 GHTALTMAEYFRDDEKQDVLLLIDNIFRF 244 (449)
T ss_pred HHHHHHHHHHHHHhcCCceEEEecChHHH
Confidence 12345666776 379999999999543
No 360
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.89 E-value=0.18 Score=50.90 Aligned_cols=73 Identities=26% Similarity=0.403 Sum_probs=43.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHhC
Q 010355 168 PDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIADKLGLKFYEESESGRARKLCERLKK 247 (512)
Q Consensus 168 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~i~~~l~~~~~~~~~~~~~~~l~~~l~~ 247 (512)
..++-+.+.|++|.|||.|++.++...... +.+++.. .+.. ...... ...+..++..-+.
T Consensus 184 ~p~rglLLfGPpgtGKtmL~~aiAsE~~at-------ff~iSas----sLts--------K~~Ge~-eK~vralf~vAr~ 243 (428)
T KOG0740|consen 184 EPVRGLLLFGPPGTGKTMLAKAIATESGAT-------FFNISAS----SLTS--------KYVGES-EKLVRALFKVARS 243 (428)
T ss_pred cccchhheecCCCCchHHHHHHHHhhhcce-------EeeccHH----Hhhh--------hccChH-HHHHHHHHHHHHh
Confidence 345677799999999999999999876642 2222211 1110 111111 2234444444445
Q ss_pred CCeEEEEEeCCCC
Q 010355 248 EKKILVILDDIWT 260 (512)
Q Consensus 248 ~k~~LlVlDdv~~ 260 (512)
..+.++++|++..
T Consensus 244 ~qPsvifidEids 256 (428)
T KOG0740|consen 244 LQPSVIFIDEIDS 256 (428)
T ss_pred cCCeEEEechhHH
Confidence 6789999999853
No 361
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=95.88 E-value=0.034 Score=54.77 Aligned_cols=38 Identities=24% Similarity=0.476 Sum_probs=29.6
Q ss_pred HHHHHhc--CCCceEEEEEcCCCCcHHHHHHHHHHhhhhc
Q 010355 160 DVINALK--NPDVHMIGAYGMAGVGKTMLVKEVARQAKAD 197 (512)
Q Consensus 160 ~l~~~L~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~ 197 (512)
.|++.+. ..+..+|+|.|.+|+|||||+..+.......
T Consensus 44 ~l~~~~~~~~~~~~~igi~G~~GaGKSTl~~~l~~~l~~~ 83 (332)
T PRK09435 44 ELLDALLPHTGNALRIGITGVPGVGKSTFIEALGMHLIEQ 83 (332)
T ss_pred HHHHHHhhcCCCcEEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 4444443 4567899999999999999999988887643
No 362
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=95.88 E-value=0.048 Score=56.00 Aligned_cols=91 Identities=23% Similarity=0.361 Sum_probs=59.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCC-CHHHHHHHHHHHhCCC-------CCCCCch-----
Q 010355 169 DVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRP-DVKKIQGQIADKLGLK-------FYEESES----- 235 (512)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~ll~~i~~~l~~~-------~~~~~~~----- 235 (512)
.-.-++|.|.+|+|||||+..+++..... +-+.++++-++... ...+++..+...-... ....+..
T Consensus 142 kGQR~gIfa~~G~GKt~Ll~~~~~~~~~~-~~dv~V~~liGER~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~~a 220 (461)
T PRK12597 142 KGGKTGLFGGAGVGKTVLMMELIFNISKQ-HSGSSVFAGVGERSREGHELYHEMKESGVLDKTVMVYGQMNEPPGARMRV 220 (461)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHHhh-CCCEEEEEcCCcchHHHHHHHHHHHhcCCcceeEEEecCCCCCHHHHHHH
Confidence 34678999999999999999998877643 56777787776554 4556666665432211 1111111
Q ss_pred -HHHHHHHHHHh-C-CCeEEEEEeCCCC
Q 010355 236 -GRARKLCERLK-K-EKKILVILDDIWT 260 (512)
Q Consensus 236 -~~~~~l~~~l~-~-~k~~LlVlDdv~~ 260 (512)
.....+.++++ + ++++||++|++..
T Consensus 221 ~~~a~tiAEyfrd~~G~~VLl~~DslTR 248 (461)
T PRK12597 221 VLTGLTIAEYLRDEEKEDVLLFIDNIFR 248 (461)
T ss_pred HHHHHHHHHHHHHhcCCceEEEeccchH
Confidence 12345666664 2 7999999999954
No 363
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=95.87 E-value=0.039 Score=48.87 Aligned_cols=68 Identities=9% Similarity=0.141 Sum_probs=39.0
Q ss_pred ccchHHHHHHHHHhc--CCCceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCCCHHHHHHHHH
Q 010355 152 ESRMSTLNDVINALK--NPDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIA 222 (512)
Q Consensus 152 ~gR~~~l~~l~~~L~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~i~ 222 (512)
+|....+.++++.+. ......|.|+|..|+||+.+|+.+++..... -...+-|+++. .+...+-..++
T Consensus 2 iG~s~~m~~~~~~~~~~a~~~~pVlI~GE~GtGK~~lA~~IH~~s~r~--~~pfi~vnc~~-~~~~~~e~~LF 71 (168)
T PF00158_consen 2 IGESPAMKRLREQAKRAASSDLPVLITGETGTGKELLARAIHNNSPRK--NGPFISVNCAA-LPEELLESELF 71 (168)
T ss_dssp S--SHHHHHHHHHHHHHTTSTS-EEEECSTTSSHHHHHHHHHHCSTTT--TS-EEEEETTT-S-HHHHHHHHH
T ss_pred EeCCHHHHHHHHHHHHHhCCCCCEEEEcCCCCcHHHHHHHHHHhhhcc--cCCeEEEehhh-hhcchhhhhhh
Confidence 566666766666554 2333567799999999999999998854421 22334445443 23344444443
No 364
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=95.87 E-value=0.0074 Score=54.13 Aligned_cols=25 Identities=24% Similarity=0.348 Sum_probs=22.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhhh
Q 010355 171 HMIGAYGMAGVGKTMLVKEVARQAK 195 (512)
Q Consensus 171 ~vi~I~G~gGiGKTtLa~~v~~~~~ 195 (512)
.+++|+|++|+|||||++.++....
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~~ 26 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARLA 26 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4789999999999999999988754
No 365
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=95.87 E-value=0.028 Score=56.11 Aligned_cols=108 Identities=13% Similarity=0.143 Sum_probs=58.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCCCHHHHHHH---HHHHhCCCCCCCCchHHHHHHHHHH
Q 010355 169 DVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQ---IADKLGLKFYEESESGRARKLCERL 245 (512)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~---i~~~l~~~~~~~~~~~~~~~l~~~l 245 (512)
....+.|.|+.|+||||+++.+..... ......++. +..+... .... +..+-.. ..........+...|
T Consensus 121 ~~g~ili~G~tGSGKTT~l~al~~~i~--~~~~~~i~t-iEdp~E~--~~~~~~~~i~q~ev---g~~~~~~~~~l~~~l 192 (343)
T TIGR01420 121 PRGLILVTGPTGSGKSTTLASMIDYIN--KNAAGHIIT-IEDPIEY--VHRNKRSLINQREV---GLDTLSFANALRAAL 192 (343)
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHhhC--cCCCCEEEE-EcCChhh--hccCccceEEcccc---CCCCcCHHHHHHHhh
Confidence 347899999999999999999887654 223344443 2222111 1000 0000000 111112334455555
Q ss_pred hCCCeEEEEEeCCCChhhhhh-hCCCCCCCCeEEEEEeCCcch
Q 010355 246 KKEKKILVILDDIWTNLDLEN-VGIPFGVRGCRVLMTARSQDV 287 (512)
Q Consensus 246 ~~~k~~LlVlDdv~~~~~~~~-l~~~~~~~gs~iivTtR~~~v 287 (512)
+ ..+=+|++|.+.+...+.. +... ..|..|+.|......
T Consensus 193 r-~~pd~i~vgEird~~~~~~~l~aa--~tGh~v~~T~Ha~~~ 232 (343)
T TIGR01420 193 R-EDPDVILIGEMRDLETVELALTAA--ETGHLVFGTLHTNSA 232 (343)
T ss_pred c-cCCCEEEEeCCCCHHHHHHHHHHH--HcCCcEEEEEcCCCH
Confidence 5 4788999999987766544 2221 345557777665543
No 366
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=95.87 E-value=0.021 Score=61.31 Aligned_cols=76 Identities=16% Similarity=0.179 Sum_probs=51.9
Q ss_pred ccccccchHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhCC
Q 010355 148 YEAFESRMSTLNDVINALKNPDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIADKLGL 227 (512)
Q Consensus 148 ~~~~~gR~~~l~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~i~~~l~~ 227 (512)
...++|.++.+..+...+... +.+.++|++|+||||||+.++...... .|..++++. ....+...+++.++..++.
T Consensus 17 ~~~viG~~~a~~~l~~a~~~~--~~~ll~G~pG~GKT~la~~la~~l~~~-~~~~~~~~~-n~~~~~~~~~~~v~~~~g~ 92 (608)
T TIGR00764 17 IDQVIGQEEAVEIIKKAAKQK--RNVLLIGEPGVGKSMLAKAMAELLPDE-ELEDILVYP-NPEDPNMPRIVEVPAGEGR 92 (608)
T ss_pred HhhccCHHHHHHHHHHHHHcC--CCEEEECCCCCCHHHHHHHHHHHcCch-hheeEEEEe-CCCCCchHHHHHHHHhhch
Confidence 456789988888777777654 366699999999999999999877542 333333322 2233555667777666653
No 367
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=95.86 E-value=0.064 Score=54.67 Aligned_cols=88 Identities=23% Similarity=0.334 Sum_probs=54.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCC-CHHHHHHHHHHHhCCCC-------CCCCch-----
Q 010355 169 DVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRP-DVKKIQGQIADKLGLKF-------YEESES----- 235 (512)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~ll~~i~~~l~~~~-------~~~~~~----- 235 (512)
.-..++|.|..|+|||||++.+++... .+.++++-++... ...+++...+..-+... ...+..
T Consensus 157 ~Gqri~I~G~sG~GKTtLL~~I~~~~~----~d~~v~~~iGER~rEv~ef~~~~l~~~~l~rsvvv~atsd~~~~~r~~a 232 (442)
T PRK08927 157 RGQRMGIFAGSGVGKSVLLSMLARNAD----ADVSVIGLIGERGREVQEFLQDDLGPEGLARSVVVVATSDEPALMRRQA 232 (442)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccC----CCEEEEEEEecCcHHHHHHHHHHhhccCceeEEEEEECCCCCHHHHHHH
Confidence 446789999999999999999987654 3455556666554 34455554444322211 111111
Q ss_pred -HHHHHHHHHHh-CCCeEEEEEeCCCC
Q 010355 236 -GRARKLCERLK-KEKKILVILDDIWT 260 (512)
Q Consensus 236 -~~~~~l~~~l~-~~k~~LlVlDdv~~ 260 (512)
.....+.++++ .++++||++|++..
T Consensus 233 ~~~a~tiAEyfrd~G~~Vll~~DslTr 259 (442)
T PRK08927 233 AYLTLAIAEYFRDQGKDVLCLMDSVTR 259 (442)
T ss_pred HHHHHHHHHHHHHCCCcEEEEEeCcHH
Confidence 12334555553 57999999999954
No 368
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=95.86 E-value=0.0081 Score=53.69 Aligned_cols=25 Identities=16% Similarity=0.248 Sum_probs=22.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhhh
Q 010355 171 HMIGAYGMAGVGKTMLVKEVARQAK 195 (512)
Q Consensus 171 ~vi~I~G~gGiGKTtLa~~v~~~~~ 195 (512)
++|.+.|++|+||||+|+.+.....
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~~ 27 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLA 27 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhC
Confidence 6899999999999999999987753
No 369
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=95.85 E-value=0.011 Score=58.25 Aligned_cols=49 Identities=16% Similarity=0.251 Sum_probs=39.2
Q ss_pred cCccccccchHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHhh
Q 010355 146 KGYEAFESRMSTLNDVINALKNPDVHMIGAYGMAGVGKTMLVKEVARQA 194 (512)
Q Consensus 146 ~~~~~~~gR~~~l~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 194 (512)
.+...++|.+..+..+.-.+...+..-+.|.|.+|+||||||+.+..-.
T Consensus 5 ~~f~~i~Gq~~~~~~l~~~~~~~~~~~vLl~G~pG~gKT~lar~la~ll 53 (334)
T PRK13407 5 FPFSAIVGQEEMKQAMVLTAIDPGIGGVLVFGDRGTGKSTAVRALAALL 53 (334)
T ss_pred CCHHHhCCHHHHHHHHHHHHhccCCCcEEEEcCCCCCHHHHHHHHHHHC
Confidence 4456788999988887755544455668999999999999999998875
No 370
>PRK08149 ATP synthase SpaL; Validated
Probab=95.85 E-value=0.028 Score=57.13 Aligned_cols=88 Identities=18% Similarity=0.271 Sum_probs=52.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCC-CCHHHHHHHHHHHhCCC-------CCCCCch-----
Q 010355 169 DVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQR-PDVKKIQGQIADKLGLK-------FYEESES----- 235 (512)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-~~~~~ll~~i~~~l~~~-------~~~~~~~----- 235 (512)
.-..++|+|.+|+|||||+..++.... .+.++...+... .....+...+....... ....+..
T Consensus 150 ~Gq~i~I~G~sG~GKTTLl~~i~~~~~----~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~sd~p~~~r~~a 225 (428)
T PRK08149 150 VGQRMGIFASAGCGKTSLMNMLIEHSE----ADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATSDFSSVDRCNA 225 (428)
T ss_pred cCCEEEEECCCCCChhHHHHHHhcCCC----CCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECCCCCHHHHHhH
Confidence 346789999999999999998887543 233334444433 34556666665533221 1111111
Q ss_pred -HHHHHHHHHHh-CCCeEEEEEeCCCC
Q 010355 236 -GRARKLCERLK-KEKKILVILDDIWT 260 (512)
Q Consensus 236 -~~~~~l~~~l~-~~k~~LlVlDdv~~ 260 (512)
.....+.++++ +++++||++|++..
T Consensus 226 ~~~a~tiAE~fr~~G~~Vll~~DslTr 252 (428)
T PRK08149 226 ALVATTVAEYFRDQGKRVVLFIDSMTR 252 (428)
T ss_pred HHHHHHHHHHHHHcCCCEEEEccchHH
Confidence 12334555553 57999999999954
No 371
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=95.85 E-value=0.017 Score=58.84 Aligned_cols=46 Identities=22% Similarity=0.166 Sum_probs=34.2
Q ss_pred ccccchHHHHHHHHHhc-------CC---------CceEEEEEcCCCCcHHHHHHHHHHhhh
Q 010355 150 AFESRMSTLNDVINALK-------NP---------DVHMIGAYGMAGVGKTMLVKEVARQAK 195 (512)
Q Consensus 150 ~~~gR~~~l~~l~~~L~-------~~---------~~~vi~I~G~gGiGKTtLa~~v~~~~~ 195 (512)
.++|.+..++.|...+. .. ..+.+.|+|++|+|||+||+.++....
T Consensus 72 ~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~ 133 (412)
T PRK05342 72 YVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILD 133 (412)
T ss_pred HeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhC
Confidence 46888888777654431 10 235689999999999999999987654
No 372
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.85 E-value=0.033 Score=49.79 Aligned_cols=27 Identities=41% Similarity=0.465 Sum_probs=23.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhh
Q 010355 169 DVHMIGAYGMAGVGKTMLVKEVARQAK 195 (512)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 195 (512)
.-.+++|.|+.|+|||||++.++....
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 50 (177)
T cd03222 24 EGEVIGIVGPNGTGKTTAVKILAGQLI 50 (177)
T ss_pred CCCEEEEECCCCChHHHHHHHHHcCCC
Confidence 346899999999999999999887653
No 373
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=95.85 E-value=0.032 Score=56.64 Aligned_cols=88 Identities=23% Similarity=0.358 Sum_probs=54.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCC-CHHHHHHHHHHHhCCCC-------CCCCch-----
Q 010355 169 DVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRP-DVKKIQGQIADKLGLKF-------YEESES----- 235 (512)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~ll~~i~~~l~~~~-------~~~~~~----- 235 (512)
.-..++|.|..|+|||||++.++.... .+.++.+-++... ...+++..++..-+... ...+..
T Consensus 161 ~GqrigI~G~sG~GKSTLL~~I~~~~~----~dv~Vi~lIGER~rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R~~a 236 (444)
T PRK08972 161 KGQRMGLFAGSGVGKSVLLGMMTRGTT----ADVIVVGLVGERGREVKEFIEEILGEEGRARSVVVAAPADTSPLMRLKG 236 (444)
T ss_pred CCCEEEEECCCCCChhHHHHHhccCCC----CCEEEEEEEcCChHHHHHHHHHhhccCCcccEEEEEECCCCCHHHHHHH
Confidence 346789999999999999999886433 3456666666654 34556666544322211 111111
Q ss_pred -HHHHHHHHHHh-CCCeEEEEEeCCCC
Q 010355 236 -GRARKLCERLK-KEKKILVILDDIWT 260 (512)
Q Consensus 236 -~~~~~l~~~l~-~~k~~LlVlDdv~~ 260 (512)
.....+.++++ .++++||++|++..
T Consensus 237 ~~~A~tiAEyfrd~G~~VLl~~DslTR 263 (444)
T PRK08972 237 CETATTIAEYFRDQGLNVLLLMDSLTR 263 (444)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEcChHH
Confidence 12234555553 47999999999954
No 374
>PRK14531 adenylate kinase; Provisional
Probab=95.82 E-value=0.027 Score=50.71 Aligned_cols=25 Identities=16% Similarity=0.175 Sum_probs=22.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhhh
Q 010355 171 HMIGAYGMAGVGKTMLVKEVARQAK 195 (512)
Q Consensus 171 ~vi~I~G~gGiGKTtLa~~v~~~~~ 195 (512)
..|.|+|++|+||||+++.++....
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~g 27 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAHG 27 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3588999999999999999988764
No 375
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=95.82 E-value=0.043 Score=53.19 Aligned_cols=56 Identities=21% Similarity=0.194 Sum_probs=42.4
Q ss_pred cCccccccchHHHHH---HHHHhcCC--CceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCC
Q 010355 146 KGYEAFESRMSTLND---VINALKNP--DVHMIGAYGMAGVGKTMLVKEVARQAKADKLFD 201 (512)
Q Consensus 146 ~~~~~~~gR~~~l~~---l~~~L~~~--~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~ 201 (512)
....+|||..+..+. |++++.++ .-+.|.|+|++|.|||+||..+++.+...-+|.
T Consensus 36 ~~~dG~VGQ~~AReAaGvIv~mik~gk~aGrgiLi~GppgTGKTAlA~gIa~eLG~dvPF~ 96 (450)
T COG1224 36 FIGDGLVGQEEAREAAGVIVKMIKQGKMAGRGILIVGPPGTGKTALAMGIARELGEDVPFV 96 (450)
T ss_pred EcCCcccchHHHHHhhhHHHHHHHhCcccccEEEEECCCCCcHHHHHHHHHHHhCCCCCce
Confidence 345678998765443 55555543 358999999999999999999999988666664
No 376
>PRK06217 hypothetical protein; Validated
Probab=95.81 E-value=0.0075 Score=54.38 Aligned_cols=34 Identities=24% Similarity=0.325 Sum_probs=26.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhhhcCCC--CeEEEE
Q 010355 172 MIGAYGMAGVGKTMLVKEVARQAKADKLF--DEVVYA 206 (512)
Q Consensus 172 vi~I~G~gGiGKTtLa~~v~~~~~~~~~f--~~~~wv 206 (512)
.|+|.|.+|+||||||+++....... +| +..+|.
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~~~-~~~~D~~~~~ 38 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLDIP-HLDTDDYFWL 38 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCc-EEEcCceeec
Confidence 48999999999999999999887532 23 345553
No 377
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=95.81 E-value=0.035 Score=49.47 Aligned_cols=26 Identities=19% Similarity=0.308 Sum_probs=22.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhhh
Q 010355 170 VHMIGAYGMAGVGKTMLVKEVARQAK 195 (512)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 195 (512)
-.+++|.|+.|+|||||.+.++....
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~~~ 53 (173)
T cd03246 28 GESLAIIGPSGSGKSTLARLILGLLR 53 (173)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccC
Confidence 46899999999999999999987653
No 378
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=95.81 E-value=0.026 Score=48.59 Aligned_cols=26 Identities=35% Similarity=0.489 Sum_probs=22.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhhh
Q 010355 170 VHMIGAYGMAGVGKTMLVKEVARQAK 195 (512)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 195 (512)
-.+++|.|..|.|||||++.++....
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~~ 51 (144)
T cd03221 26 GDRIGLVGRNGAGKSTLLKLIAGELE 51 (144)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCCCC
Confidence 46899999999999999999987653
No 379
>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.
Probab=95.80 E-value=0.066 Score=52.53 Aligned_cols=86 Identities=14% Similarity=0.205 Sum_probs=53.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCC-CHHHHHHHHHHH----hCCC----------CCCCCc
Q 010355 170 VHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRP-DVKKIQGQIADK----LGLK----------FYEESE 234 (512)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~ll~~i~~~----l~~~----------~~~~~~ 234 (512)
-..++|.|..|+|||+|+++++++.. -+.++++-++... ...+++..+-.. ++.. ....+.
T Consensus 157 Gqr~~I~G~~G~GKT~L~~~Iak~~~----~dvvVyv~iGERg~Ev~e~l~ef~~l~~~~~~~~~m~rtvlV~nts~~p~ 232 (369)
T cd01134 157 GGTAAIPGPFGCGKTVIQQSLSKYSN----SDIVIYVGCGERGNEMTEVLEEFPELTDPVTGEPLMKRTVLIANTSNMPV 232 (369)
T ss_pred CCEEEEECCCCCChHHHHHHHHhCCC----CCEEEEEEeCCChHHHHHHHHHHHhhccccccCCccceEEEEEECCCCCH
Confidence 35789999999999999999988643 3568888887654 445555554321 1111 001111
Q ss_pred h------HHHHHHHHHHh-CCCeEEEEEeCCC
Q 010355 235 S------GRARKLCERLK-KEKKILVILDDIW 259 (512)
Q Consensus 235 ~------~~~~~l~~~l~-~~k~~LlVlDdv~ 259 (512)
. .....+.++++ .++.+||++|++.
T Consensus 233 ~~R~~s~yta~tiAEYfrd~G~dVll~~Ds~t 264 (369)
T cd01134 233 AAREASIYTGITIAEYFRDMGYNVALMADSTS 264 (369)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCEEEEEcChh
Confidence 1 11234555553 4789999999984
No 380
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=95.79 E-value=0.015 Score=57.46 Aligned_cols=47 Identities=17% Similarity=0.247 Sum_probs=39.5
Q ss_pred ccccccchHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHhh
Q 010355 148 YEAFESRMSTLNDVINALKNPDVHMIGAYGMAGVGKTMLVKEVARQA 194 (512)
Q Consensus 148 ~~~~~gR~~~l~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 194 (512)
...++|.+..+..|+-.+.++...-+.|.|..|+|||||++.+....
T Consensus 3 f~~ivgq~~~~~al~~~~~~~~~g~vli~G~~G~gKttl~r~~~~~~ 49 (337)
T TIGR02030 3 FTAIVGQDEMKLALLLNVIDPKIGGVMVMGDRGTGKSTAVRALAALL 49 (337)
T ss_pred ccccccHHHHHHHHHHHhcCCCCCeEEEEcCCCCCHHHHHHHHHHhh
Confidence 45678999988888777777667778899999999999999998765
No 381
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=95.78 E-value=0.011 Score=52.23 Aligned_cols=28 Identities=25% Similarity=0.353 Sum_probs=25.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhhh
Q 010355 169 DVHMIGAYGMAGVGKTMLVKEVARQAKA 196 (512)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 196 (512)
..++++|+|..|+|||||++.+......
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l~~ 32 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPALCA 32 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHHhh
Confidence 4679999999999999999999988764
No 382
>PRK00889 adenylylsulfate kinase; Provisional
Probab=95.78 E-value=0.011 Score=52.86 Aligned_cols=28 Identities=21% Similarity=0.368 Sum_probs=24.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhhh
Q 010355 169 DVHMIGAYGMAGVGKTMLVKEVARQAKA 196 (512)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 196 (512)
...+|+|+|++|+||||+|+.++.....
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l~~ 30 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKLRE 30 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4568999999999999999999988753
No 383
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=95.77 E-value=0.0073 Score=52.43 Aligned_cols=23 Identities=30% Similarity=0.512 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhh
Q 010355 172 MIGAYGMAGVGKTMLVKEVARQA 194 (512)
Q Consensus 172 vi~I~G~gGiGKTtLa~~v~~~~ 194 (512)
++.|+|++|+||||+|+.+....
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~ 23 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERL 23 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhc
Confidence 47899999999999999998764
No 384
>PTZ00088 adenylate kinase 1; Provisional
Probab=95.76 E-value=0.038 Score=51.53 Aligned_cols=24 Identities=25% Similarity=0.501 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhh
Q 010355 172 MIGAYGMAGVGKTMLVKEVARQAK 195 (512)
Q Consensus 172 vi~I~G~gGiGKTtLa~~v~~~~~ 195 (512)
.|.|.|++|+||||+|+.++....
T Consensus 8 rIvl~G~PGsGK~T~a~~La~~~g 31 (229)
T PTZ00088 8 KIVLFGAPGVGKGTFAEILSKKEN 31 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 388999999999999999988764
No 385
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=95.73 E-value=0.014 Score=51.68 Aligned_cols=24 Identities=46% Similarity=0.540 Sum_probs=20.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHhhhh
Q 010355 173 IGAYGMAGVGKTMLVKEVARQAKA 196 (512)
Q Consensus 173 i~I~G~gGiGKTtLa~~v~~~~~~ 196 (512)
|.|.|.+|+|||||++.++...+.
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l~~ 25 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEELKK 25 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHhhc
Confidence 689999999999999999988753
No 386
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=95.73 E-value=0.012 Score=52.76 Aligned_cols=24 Identities=33% Similarity=0.623 Sum_probs=22.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhh
Q 010355 172 MIGAYGMAGVGKTMLVKEVARQAK 195 (512)
Q Consensus 172 vi~I~G~gGiGKTtLa~~v~~~~~ 195 (512)
+|+|.|.+|+||||||+.+.....
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~ 24 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLR 24 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHH
Confidence 589999999999999999998875
No 387
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=95.72 E-value=0.0078 Score=54.17 Aligned_cols=23 Identities=35% Similarity=0.538 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhh
Q 010355 172 MIGAYGMAGVGKTMLVKEVARQA 194 (512)
Q Consensus 172 vi~I~G~gGiGKTtLa~~v~~~~ 194 (512)
+|+|.|.+|+||||||+.++...
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~ 23 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRIL 23 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999999875
No 388
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=95.72 E-value=0.09 Score=51.56 Aligned_cols=92 Identities=21% Similarity=0.339 Sum_probs=61.0
Q ss_pred cccccchHHHHHHHHHhc------CCCceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeC----CCC---CHH
Q 010355 149 EAFESRMSTLNDVINALK------NPDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVS----QRP---DVK 215 (512)
Q Consensus 149 ~~~~gR~~~l~~l~~~L~------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~----~~~---~~~ 215 (512)
..|+|-++.+++|++.+. ...-+++.++|+.|.|||||+..+.+-... | .+|.-.. ..+ =+.
T Consensus 61 ~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~~le~---y--~~Y~l~~~Pm~e~PL~L~P~ 135 (358)
T PF08298_consen 61 DEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKRGLEE---Y--PIYTLKGCPMHEEPLHLFPK 135 (358)
T ss_pred ccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHHHhhe---E--EEEEecCCccccChhhhCCH
Confidence 478999999999999886 345789999999999999999999887763 2 3333221 111 245
Q ss_pred HHHHHHHHHhCCCCCCCCchHHHHHHHHHH
Q 010355 216 KIQGQIADKLGLKFYEESESGRARKLCERL 245 (512)
Q Consensus 216 ~ll~~i~~~l~~~~~~~~~~~~~~~l~~~l 245 (512)
++-..+...++......-.......|.+..
T Consensus 136 ~~r~~~~~~~~~~i~g~l~p~~~~~L~~~y 165 (358)
T PF08298_consen 136 ELRREFEDELGIRIEGELCPWCRKRLLEEY 165 (358)
T ss_pred hHHHHHHHHhCcccCCCcCHHHHHHHHHHh
Confidence 555666777776544433333333444444
No 389
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=95.72 E-value=0.0079 Score=54.98 Aligned_cols=23 Identities=39% Similarity=0.616 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhh
Q 010355 172 MIGAYGMAGVGKTMLVKEVARQA 194 (512)
Q Consensus 172 vi~I~G~gGiGKTtLa~~v~~~~ 194 (512)
+|+|.|++|+|||||++.+....
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998875
No 390
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=95.71 E-value=0.0083 Score=51.69 Aligned_cols=24 Identities=33% Similarity=0.483 Sum_probs=21.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhh
Q 010355 172 MIGAYGMAGVGKTMLVKEVARQAK 195 (512)
Q Consensus 172 vi~I~G~gGiGKTtLa~~v~~~~~ 195 (512)
+|.|.|++|+||||+|+.+.....
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~~ 24 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKLG 24 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999998764
No 391
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=95.71 E-value=0.014 Score=57.75 Aligned_cols=49 Identities=14% Similarity=0.215 Sum_probs=42.4
Q ss_pred CccccccchHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHhhh
Q 010355 147 GYEAFESRMSTLNDVINALKNPDVHMIGAYGMAGVGKTMLVKEVARQAK 195 (512)
Q Consensus 147 ~~~~~~gR~~~l~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 195 (512)
+...++|.++.+..|+..+.++...-|.|.|..|+||||+|+.++....
T Consensus 15 pf~~ivGq~~~k~al~~~~~~p~~~~vli~G~~GtGKs~~ar~~~~~l~ 63 (350)
T CHL00081 15 PFTAIVGQEEMKLALILNVIDPKIGGVMIMGDRGTGKSTTIRALVDLLP 63 (350)
T ss_pred CHHHHhChHHHHHHHHHhccCCCCCeEEEEcCCCCCHHHHHHHHHHHHh
Confidence 4567899999988888888888888888999999999999999987654
No 392
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=95.70 E-value=0.036 Score=54.64 Aligned_cols=23 Identities=17% Similarity=0.374 Sum_probs=21.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHhhh
Q 010355 173 IGAYGMAGVGKTMLVKEVARQAK 195 (512)
Q Consensus 173 i~I~G~gGiGKTtLa~~v~~~~~ 195 (512)
+++.|++|+||||+++.+.....
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~~l~ 24 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSATLR 24 (340)
T ss_pred eEEECCCCCCHHHHHHHHHHHHH
Confidence 67899999999999999998875
No 393
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=95.70 E-value=0.021 Score=48.07 Aligned_cols=27 Identities=26% Similarity=0.252 Sum_probs=24.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhhhh
Q 010355 170 VHMIGAYGMAGVGKTMLVKEVARQAKA 196 (512)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~v~~~~~~ 196 (512)
..+|.+.|.-|+|||||++.++.....
T Consensus 22 ~~~i~l~G~lGaGKTtl~~~l~~~lg~ 48 (133)
T TIGR00150 22 GTVVLLKGDLGAGKTTLVQGLLQGLGI 48 (133)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHcCC
Confidence 468999999999999999999998754
No 394
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=95.69 E-value=0.017 Score=56.70 Aligned_cols=53 Identities=21% Similarity=0.300 Sum_probs=37.0
Q ss_pred ccccccchHHHHH---HHHHhcCCC--ceEEEEEcCCCCcHHHHHHHHHHhhhhcCCC
Q 010355 148 YEAFESRMSTLND---VINALKNPD--VHMIGAYGMAGVGKTMLVKEVARQAKADKLF 200 (512)
Q Consensus 148 ~~~~~gR~~~l~~---l~~~L~~~~--~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f 200 (512)
..++||..+..+. +++++...+ -+.|.|.|++|.|||+||..+++.....-.|
T Consensus 23 ~~GlVGQ~~AReAagiiv~mIk~~K~aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF 80 (398)
T PF06068_consen 23 ADGLVGQEKAREAAGIIVDMIKEGKIAGRAILIAGPPGTGKTALAMAIAKELGEDVPF 80 (398)
T ss_dssp ETTEES-HHHHHHHHHHHHHHHTT--TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-E
T ss_pred cccccChHHHHHHHHHHHHHHhcccccCcEEEEeCCCCCCchHHHHHHHHHhCCCCCe
Confidence 4589998765543 455555443 5899999999999999999999998755444
No 395
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=95.68 E-value=0.23 Score=47.86 Aligned_cols=36 Identities=14% Similarity=0.066 Sum_probs=28.5
Q ss_pred HHHHHHhcCCC-ceEEEEEcCCCCcHHHHHHHHHHhh
Q 010355 159 NDVINALKNPD-VHMIGAYGMAGVGKTMLVKEVARQA 194 (512)
Q Consensus 159 ~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~ 194 (512)
++|...+..++ .+...++|+.|+||+++|..++...
T Consensus 7 ~~L~~~i~~~rl~HAyLf~G~~G~Gk~~lA~~~A~~l 43 (290)
T PRK05917 7 EALIQRVRDQKVPSAIILHGQDLSNLSARAYELASLI 43 (290)
T ss_pred HHHHHHHHcCCcCeeEeeECCCCCcHHHHHHHHHHHH
Confidence 45666666544 5678899999999999999988765
No 396
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=95.67 E-value=0.15 Score=55.58 Aligned_cols=48 Identities=15% Similarity=0.320 Sum_probs=35.5
Q ss_pred ccccccchHHHHHHHHHhc--CCCceEEEEEcCCCCcHHHHHHHHHHhhh
Q 010355 148 YEAFESRMSTLNDVINALK--NPDVHMIGAYGMAGVGKTMLVKEVARQAK 195 (512)
Q Consensus 148 ~~~~~gR~~~l~~l~~~L~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 195 (512)
...++|....+.++...+. ......|.|+|..|+||+++|+.+.+...
T Consensus 324 ~~~l~g~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~~A~~ih~~s~ 373 (638)
T PRK11388 324 FDHMPQDSPQMRRLIHFGRQAAKSSFPVLLCGEEGVGKALLAQAIHNESE 373 (638)
T ss_pred ccceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCcCHHHHHHHHHHhCC
Confidence 3457788877777766554 12334578999999999999999987643
No 397
>PF11868 DUF3388: Protein of unknown function (DUF3388); InterPro: IPR024514 This domain is found in a family of bacterial proteins that are functionally uncharacterised. Proteins in this family are typically between 261 to 275 amino acids in length and have a N-terminal ACT domain.
Probab=95.66 E-value=0.027 Score=47.95 Aligned_cols=47 Identities=26% Similarity=0.333 Sum_probs=31.8
Q ss_pred HHHHHHHHH----hcCCCceEEEEEcCCCCcHHHH--HHHHHHhhhhcCCCCeEEEEEeCCC
Q 010355 156 STLNDVINA----LKNPDVHMIGAYGMAGVGKTML--VKEVARQAKADKLFDEVVYAEVSQR 211 (512)
Q Consensus 156 ~~l~~l~~~----L~~~~~~vi~I~G~gGiGKTtL--a~~v~~~~~~~~~f~~~~wv~~~~~ 211 (512)
+++.-|++. +...+.++|+|-||+-+|||.- |..||... -|+-+|..
T Consensus 36 eeLGlLVDFmaEl~K~~Gh~lIGiRGmPRVGKTEsivAasVcAnK---------rW~f~SST 88 (192)
T PF11868_consen 36 EELGLLVDFMAELFKEEGHKLIGIRGMPRVGKTESIVAASVCANK---------RWLFLSST 88 (192)
T ss_pred hHhccHHHHHHHHHHhcCceEEeecCCCccCchhHHHHHhhhcCc---------eEEEeeHH
Confidence 344444444 4477889999999999999954 44444333 38888763
No 398
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=95.65 E-value=0.036 Score=56.48 Aligned_cols=88 Identities=20% Similarity=0.268 Sum_probs=49.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHh-----CCCCCC-CCch------HH
Q 010355 170 VHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIADKL-----GLKFYE-ESES------GR 237 (512)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~i~~~l-----~~~~~~-~~~~------~~ 237 (512)
-..++|+|..|+|||||++.++.... ...+++++.-.....+..+....+... +.-... .+.. ..
T Consensus 165 Gqri~I~G~SGsGKTTLL~~Ia~l~~---pd~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~qsd~~~~~r~~~~~~ 241 (450)
T PRK06002 165 GQRIGIFAGSGVGKSTLLAMLARADA---FDTVVIALVGERGREVREFLEDTLADNLKKAVAVVATSDESPMMRRLAPLT 241 (450)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCC---CCeeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEcCCCCHHHHHHHHHH
Confidence 36789999999999999988876543 223445443323334444444333322 111111 1111 12
Q ss_pred HHHHHHHHh-CCCeEEEEEeCCCC
Q 010355 238 ARKLCERLK-KEKKILVILDDIWT 260 (512)
Q Consensus 238 ~~~l~~~l~-~~k~~LlVlDdv~~ 260 (512)
...+.++++ +++.+||++|++..
T Consensus 242 a~~iAEyfrd~G~~Vll~~DslTr 265 (450)
T PRK06002 242 ATAIAEYFRDRGENVLLIVDSVTR 265 (450)
T ss_pred HHHHHHHHHHcCCCEEEeccchHH
Confidence 234455553 47899999999854
No 399
>PRK00279 adk adenylate kinase; Reviewed
Probab=95.65 E-value=0.052 Score=50.29 Aligned_cols=24 Identities=25% Similarity=0.232 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhh
Q 010355 172 MIGAYGMAGVGKTMLVKEVARQAK 195 (512)
Q Consensus 172 vi~I~G~gGiGKTtLa~~v~~~~~ 195 (512)
.|.|.|++|+||||+|+.++....
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~~ 25 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKYG 25 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999987654
No 400
>TIGR01041 ATP_syn_B_arch ATP synthase archaeal, B subunit. Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.
Probab=95.64 E-value=0.045 Score=56.20 Aligned_cols=91 Identities=21% Similarity=0.227 Sum_probs=57.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhhhhcCCC--CeEEEEEeCCCC-CHHHHHHHHHHHhCCCC-------CCCCc-----
Q 010355 170 VHMIGAYGMAGVGKTMLVKEVARQAKADKLF--DEVVYAEVSQRP-DVKKIQGQIADKLGLKF-------YEESE----- 234 (512)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f--~~~~wv~~~~~~-~~~~ll~~i~~~l~~~~-------~~~~~----- 234 (512)
-.-++|.|..|+|||+|+..+++.......+ ..++++-+++.. ...+++..+...-.+.. ...+.
T Consensus 141 GQR~gIfgg~G~GKs~L~~~ia~~~~ad~~~~~~v~V~~~iGERgrEv~efi~~~~~~~~l~rtvvv~atsd~p~~~R~~ 220 (458)
T TIGR01041 141 GQKLPIFSGSGLPHNELAAQIARQATVRGEESEFAVVFAAMGITYEEANFFMKDFEETGALERAVVFLNLADDPAVERIV 220 (458)
T ss_pred CCEEEeeCCCCCCHHHHHHHHHHhhcccCCCCceEEEEEEccccchHHHHHHHHHHhcCCcceEEEEEECCCCCHHHHHH
Confidence 4568899999999999999998876532111 155666666554 55666666654322211 11111
Q ss_pred -hHHHHHHHHHHh--CCCeEEEEEeCCCC
Q 010355 235 -SGRARKLCERLK--KEKKILVILDDIWT 260 (512)
Q Consensus 235 -~~~~~~l~~~l~--~~k~~LlVlDdv~~ 260 (512)
......+.++++ +++++||++|++..
T Consensus 221 a~~~a~tiAEyfr~d~G~~VLli~DslTR 249 (458)
T TIGR01041 221 TPRMALTAAEYLAFEKDMHVLVILTDMTN 249 (458)
T ss_pred HHHHHHHHHHHHHHccCCcEEEEEcChhH
Confidence 112345777776 58999999999954
No 401
>PRK14527 adenylate kinase; Provisional
Probab=95.62 E-value=0.012 Score=53.37 Aligned_cols=27 Identities=19% Similarity=0.265 Sum_probs=24.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhh
Q 010355 169 DVHMIGAYGMAGVGKTMLVKEVARQAK 195 (512)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 195 (512)
...+|.|+|++|+||||+|+.++....
T Consensus 5 ~~~~i~i~G~pGsGKsT~a~~La~~~~ 31 (191)
T PRK14527 5 KNKVVIFLGPPGAGKGTQAERLAQELG 31 (191)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 457899999999999999999987765
No 402
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=95.61 E-value=0.019 Score=50.05 Aligned_cols=34 Identities=26% Similarity=0.446 Sum_probs=28.1
Q ss_pred HHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHhh
Q 010355 158 LNDVINALKNPDVHMIGAYGMAGVGKTMLVKEVARQA 194 (512)
Q Consensus 158 l~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 194 (512)
++.|..+|.+ ++++++|..|+|||||+..+....
T Consensus 26 ~~~l~~~l~~---k~~vl~G~SGvGKSSLiN~L~~~~ 59 (161)
T PF03193_consen 26 IEELKELLKG---KTSVLLGQSGVGKSSLINALLPEA 59 (161)
T ss_dssp HHHHHHHHTT---SEEEEECSTTSSHHHHHHHHHTSS
T ss_pred HHHHHHHhcC---CEEEEECCCCCCHHHHHHHHHhhc
Confidence 5667777764 789999999999999999987653
No 403
>PRK13947 shikimate kinase; Provisional
Probab=95.60 E-value=0.01 Score=52.71 Aligned_cols=24 Identities=38% Similarity=0.404 Sum_probs=22.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhh
Q 010355 172 MIGAYGMAGVGKTMLVKEVARQAK 195 (512)
Q Consensus 172 vi~I~G~gGiGKTtLa~~v~~~~~ 195 (512)
.|.|+|++|+||||+|+.+++...
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg 26 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLS 26 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhC
Confidence 488999999999999999998875
No 404
>PRK14529 adenylate kinase; Provisional
Probab=95.60 E-value=0.048 Score=50.53 Aligned_cols=83 Identities=18% Similarity=0.175 Sum_probs=46.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHhhhhcCCCCe--EEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHhCCCe
Q 010355 173 IGAYGMAGVGKTMLVKEVARQAKADKLFDE--VVYAEVSQRPDVKKIQGQIADKLGLKFYEESESGRARKLCERLKKEKK 250 (512)
Q Consensus 173 i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~--~~wv~~~~~~~~~~ll~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~ 250 (512)
|.|.|++|+||||+++.++...... +.+. .+.-.+..........+.++..-.. ....-....+.+++.....
T Consensus 3 I~l~G~PGsGK~T~a~~La~~~~~~-~is~gdllr~~i~~~t~lg~~i~~~i~~G~l----vpdei~~~lv~~~l~~~~~ 77 (223)
T PRK14529 3 ILIFGPNGSGKGTQGALVKKKYDLA-HIESGAIFREHIGGGTELGKKAKEYIDRGDL----VPDDITIPMILETLKQDGK 77 (223)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCC-CcccchhhhhhccCCChHHHHHHHHHhccCc----chHHHHHHHHHHHHhccCC
Confidence 7889999999999999999887632 2211 1111222223333444444433211 1222334455666653224
Q ss_pred EEEEEeCCCC
Q 010355 251 ILVILDDIWT 260 (512)
Q Consensus 251 ~LlVlDdv~~ 260 (512)
.-+|||.+-.
T Consensus 78 ~g~iLDGfPR 87 (223)
T PRK14529 78 NGWLLDGFPR 87 (223)
T ss_pred CcEEEeCCCC
Confidence 5689999853
No 405
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=95.59 E-value=0.014 Score=53.77 Aligned_cols=32 Identities=22% Similarity=0.369 Sum_probs=27.5
Q ss_pred HhcCCCceEEEEEcCCCCcHHHHHHHHHHhhh
Q 010355 164 ALKNPDVHMIGAYGMAGVGKTMLVKEVARQAK 195 (512)
Q Consensus 164 ~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 195 (512)
.+...++++|+|+|..|+|||||..++.+...
T Consensus 16 ~~~~~~~~~i~~~G~~gsGKTTli~~l~~~~~ 47 (207)
T TIGR00073 16 RLDKHGLVVLNFMSSPGSGKTTLIEKLIDNLK 47 (207)
T ss_pred HhhhcCcEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 34467899999999999999999999988754
No 406
>PHA02774 E1; Provisional
Probab=95.59 E-value=0.037 Score=57.68 Aligned_cols=49 Identities=20% Similarity=0.322 Sum_probs=35.7
Q ss_pred HHHHHHHHhcC-CCceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeC
Q 010355 157 TLNDVINALKN-PDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVS 209 (512)
Q Consensus 157 ~l~~l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~ 209 (512)
.+..|..+|.. ++...+.|+|++|+|||.+|..+++-.. ...+.|++..
T Consensus 420 fl~~lk~~l~~~PKknciv~~GPP~TGKS~fa~sL~~~L~----G~vi~fvN~~ 469 (613)
T PHA02774 420 FLTALKDFLKGIPKKNCLVIYGPPDTGKSMFCMSLIKFLK----GKVISFVNSK 469 (613)
T ss_pred HHHHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHHhC----CCEEEEEECc
Confidence 45666666663 3346899999999999999999998764 2345667653
No 407
>COG3598 RepA RecA-family ATPase [DNA replication, recombination, and repair]
Probab=95.58 E-value=0.054 Score=51.80 Aligned_cols=67 Identities=24% Similarity=0.354 Sum_probs=41.4
Q ss_pred HHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHhhhh-cCCCC-------eEEEEEeCCC-CCHHHHHHHHHHHhCCCC
Q 010355 161 VINALKNPDVHMIGAYGMAGVGKTMLVKEVARQAKA-DKLFD-------EVVYAEVSQR-PDVKKIQGQIADKLGLKF 229 (512)
Q Consensus 161 l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~-~~~f~-------~~~wv~~~~~-~~~~~ll~~i~~~l~~~~ 229 (512)
|-.++..+ .++.|+|.||+|||||+..++-.... ++.|. .+++|++... .++..-++.++.++++++
T Consensus 82 Id~~fr~g--~~~~~~gdsg~GKttllL~l~IalaaG~~lfG~~v~epGkvlyvslEl~re~~L~Rl~~v~a~mgLsP 157 (402)
T COG3598 82 IDEFFRKG--YVSILYGDSGVGKTTLLLYLCIALAAGKNLFGNKVKEPGKVLYVSLELYREDILERLEPVRARMGLSP 157 (402)
T ss_pred hhHHhhcC--eeEEEecCCcccHhHHHHHHHHHHHhhHHHhcccccCCCeEEEEEeccChHHHHHHHHHHHHHcCCCh
Confidence 33444433 45567799999999998877654322 23333 5777776532 344455566677887654
No 408
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=95.57 E-value=0.11 Score=50.94 Aligned_cols=28 Identities=36% Similarity=0.477 Sum_probs=25.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhhh
Q 010355 169 DVHMIGAYGMAGVGKTMLVKEVARQAKA 196 (512)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 196 (512)
+..+++|+|++|+||||++..++.....
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~ 140 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKA 140 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHh
Confidence 4689999999999999999999988764
No 409
>PRK14530 adenylate kinase; Provisional
Probab=95.56 E-value=0.011 Score=54.72 Aligned_cols=25 Identities=24% Similarity=0.240 Sum_probs=22.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhhh
Q 010355 171 HMIGAYGMAGVGKTMLVKEVARQAK 195 (512)
Q Consensus 171 ~vi~I~G~gGiGKTtLa~~v~~~~~ 195 (512)
+.|+|+|++|+||||+|+.++....
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~~~~ 28 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAEEFG 28 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4689999999999999999988764
No 410
>COG4240 Predicted kinase [General function prediction only]
Probab=95.55 E-value=0.097 Score=47.59 Aligned_cols=82 Identities=12% Similarity=0.123 Sum_probs=51.5
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhC-----CCCCCCCchHHHHHH
Q 010355 167 NPDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIADKLG-----LKFYEESESGRARKL 241 (512)
Q Consensus 167 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~i~~~l~-----~~~~~~~~~~~~~~l 241 (512)
.++.-+++|.|+-|+||||++..+++....+.- ..+...++..-+-...-.-.++++.. -..+...+......+
T Consensus 47 ~grPli~gisGpQGSGKStls~~i~~~L~~kg~-ert~~lSLDDlYlthadrl~La~q~npllq~RGlpGTHD~tlglnV 125 (300)
T COG4240 47 RGRPLIVGISGPQGSGKSTLSALIVRLLAAKGL-ERTATLSLDDLYLTHADRLRLARQVNPLLQTRGLPGTHDPTLGLNV 125 (300)
T ss_pred cCCceEEEeecCCCCchhhHHHHHHHHHHHhcc-cceEEeehhhhhcchHHHHHHHHhcCchhcccCCCCCCchHHHHHH
Confidence 445678999999999999999999998875532 45666655443333333334444431 112233445566677
Q ss_pred HHHHhCCC
Q 010355 242 CERLKKEK 249 (512)
Q Consensus 242 ~~~l~~~k 249 (512)
.+.+.+++
T Consensus 126 Lnai~~g~ 133 (300)
T COG4240 126 LNAIARGG 133 (300)
T ss_pred HHHHhcCC
Confidence 77777655
No 411
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=95.54 E-value=0.012 Score=48.59 Aligned_cols=23 Identities=35% Similarity=0.488 Sum_probs=20.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHhhh
Q 010355 173 IGAYGMAGVGKTMLVKEVARQAK 195 (512)
Q Consensus 173 i~I~G~gGiGKTtLa~~v~~~~~ 195 (512)
|.|+|..|+|||||.+.++....
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~~~ 24 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGGEF 24 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS-
T ss_pred EEEECcCCCCHHHHHHHHhcCCC
Confidence 78999999999999999997654
No 412
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=95.52 E-value=0.039 Score=50.16 Aligned_cols=26 Identities=23% Similarity=0.309 Sum_probs=23.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhhhh
Q 010355 171 HMIGAYGMAGVGKTMLVKEVARQAKA 196 (512)
Q Consensus 171 ~vi~I~G~gGiGKTtLa~~v~~~~~~ 196 (512)
..|+|.|..|+||||+++.++.....
T Consensus 4 ~~IvieG~~GsGKsT~~~~L~~~l~~ 29 (195)
T TIGR00041 4 MFIVIEGIDGAGKTTQANLLKKLLQE 29 (195)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 57999999999999999999988764
No 413
>PF12780 AAA_8: P-loop containing dynein motor region D4; InterPro: IPR024317 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four (D1 - D4) correspond to the ATP binding sites with P-loop signatures described previously, and two (D5, D6) are modules in which the P loop has been lost in evolution. This particular entry represents the D4 ATP-binding domain of the motor [].; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=95.50 E-value=0.044 Score=52.35 Aligned_cols=78 Identities=21% Similarity=0.285 Sum_probs=45.6
Q ss_pred HHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCCCHHHH---HHHHHHHhCCCCCCCC
Q 010355 157 TLNDVINALKNPDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKI---QGQIADKLGLKFYEES 233 (512)
Q Consensus 157 ~l~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~l---l~~i~~~l~~~~~~~~ 233 (512)
.+-+|...|..++ +-..++|.||+||+||++.++.-...+ ++-+.++..++..++ ++.++...|.
T Consensus 19 hi~ri~RvL~~~~-Gh~LLvG~~GsGr~sl~rLaa~i~~~~-----~~~i~~~~~y~~~~f~~dLk~~~~~ag~------ 86 (268)
T PF12780_consen 19 HIARISRVLSQPR-GHALLVGVGGSGRQSLARLAAFICGYE-----VFQIEITKGYSIKDFKEDLKKALQKAGI------ 86 (268)
T ss_dssp HHHHHHHHHCSTT-EEEEEECTTTSCHHHHHHHHHHHTTEE-----EE-TTTSTTTHHHHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHHcCCC-CCeEEecCCCccHHHHHHHHHHHhccc-----eEEEEeeCCcCHHHHHHHHHHHHHHHhc------
Confidence 3455566666544 556699999999999999888755421 223334555555443 3333333332
Q ss_pred chHHHHHHHHHHhCCCeEEEEEeCCC
Q 010355 234 ESGRARKLCERLKKEKKILVILDDIW 259 (512)
Q Consensus 234 ~~~~~~~l~~~l~~~k~~LlVlDdv~ 259 (512)
.+++..+++.|-+
T Consensus 87 -------------~~~~~vfll~d~q 99 (268)
T PF12780_consen 87 -------------KGKPTVFLLTDSQ 99 (268)
T ss_dssp -------------S-S-EEEEEECCC
T ss_pred -------------cCCCeEEEecCcc
Confidence 3577888887753
No 414
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=95.50 E-value=0.079 Score=56.04 Aligned_cols=85 Identities=15% Similarity=0.144 Sum_probs=54.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCC----------------CCC
Q 010355 170 VHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIADKLGLKFY----------------EES 233 (512)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~i~~~l~~~~~----------------~~~ 233 (512)
..++.|.|.+|+|||+|+.+++..... .-..++|++.... +..+.+.+ ..+|.+.. ...
T Consensus 273 g~~~li~G~~G~GKT~l~~~~~~~~~~--~g~~~~yis~e~~--~~~i~~~~-~~~g~~~~~~~~~g~l~i~~~~~~~~~ 347 (509)
T PRK09302 273 GSIILVSGATGTGKTLLASKFAEAACR--RGERCLLFAFEES--RAQLIRNA-RSWGIDLEKMEEKGLLKIICARPESYG 347 (509)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHh--CCCcEEEEEecCC--HHHHHHHH-HHcCCChHHHhhcCCceeecCCcccCC
Confidence 468889999999999999999876643 2467888877653 55555443 44543211 011
Q ss_pred chHHHHHHHHHHhCCCeEEEEEeCCC
Q 010355 234 ESGRARKLCERLKKEKKILVILDDIW 259 (512)
Q Consensus 234 ~~~~~~~l~~~l~~~k~~LlVlDdv~ 259 (512)
.......+...+...+.-++|+|.+.
T Consensus 348 ~~~~~~~i~~~i~~~~~~~vVIDslt 373 (509)
T PRK09302 348 LEDHLIIIKREIEEFKPSRVAIDPLS 373 (509)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEcCHH
Confidence 12334455555554456689999984
No 415
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=95.49 E-value=0.036 Score=55.82 Aligned_cols=40 Identities=28% Similarity=0.424 Sum_probs=32.1
Q ss_pred HHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHhhhh
Q 010355 157 TLNDVINALKNPDVHMIGAYGMAGVGKTMLVKEVARQAKA 196 (512)
Q Consensus 157 ~l~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 196 (512)
.++.+++.+.......+.|.|.||+|||+|.+.+.+..+.
T Consensus 9 ~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~~~i~~~~~~ 48 (364)
T PF05970_consen 9 VFDTVIEAIENEEGLNFFVTGPAGTGKSFLIKAIIDYLRS 48 (364)
T ss_pred HHHHHHHHHHccCCcEEEEEcCCCCChhHHHHHHHHHhcc
Confidence 3455666666566688999999999999999999988764
No 416
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=95.49 E-value=0.038 Score=50.22 Aligned_cols=24 Identities=33% Similarity=0.502 Sum_probs=22.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhh
Q 010355 172 MIGAYGMAGVGKTMLVKEVARQAK 195 (512)
Q Consensus 172 vi~I~G~gGiGKTtLa~~v~~~~~ 195 (512)
+|+|.|+.|+||||+++.++....
T Consensus 2 ~I~ieG~~GsGKtT~~~~L~~~l~ 25 (200)
T cd01672 2 FIVFEGIDGAGKTTLIELLAERLE 25 (200)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999998875
No 417
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=95.49 E-value=0.049 Score=48.31 Aligned_cols=49 Identities=27% Similarity=0.344 Sum_probs=31.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHh
Q 010355 171 HMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIADKL 225 (512)
Q Consensus 171 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~i~~~l 225 (512)
.++.|.|.+|+||||+|..++..... .++++.-.. ..-.+....|....
T Consensus 2 ~~ili~G~~~sGKS~~a~~l~~~~~~-----~~~~iat~~-~~~~e~~~ri~~h~ 50 (170)
T PRK05800 2 MLILVTGGARSGKSRFAERLAAQSGL-----QVLYIATAQ-PFDDEMAARIAHHR 50 (170)
T ss_pred CEEEEECCCCccHHHHHHHHHHHcCC-----CcEeCcCCC-CChHHHHHHHHHHH
Confidence 36899999999999999999876431 233444333 33345556664443
No 418
>PRK12678 transcription termination factor Rho; Provisional
Probab=95.49 E-value=0.057 Score=56.16 Aligned_cols=100 Identities=18% Similarity=0.179 Sum_probs=53.8
Q ss_pred HHHHhc-CCCceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeE-EEEEeCCCCCHH-HHHHHHHHHhCCCCCCCC----
Q 010355 161 VINALK-NPDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEV-VYAEVSQRPDVK-KIQGQIADKLGLKFYEES---- 233 (512)
Q Consensus 161 l~~~L~-~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~-~wv~~~~~~~~~-~ll~~i~~~l~~~~~~~~---- 233 (512)
++++|. -..-.-.+|+|++|+|||||++.+++.... ++-++. +.+-+...+... ++.+.+-..+-......+
T Consensus 406 vIDll~PIGkGQR~LIvgpp~aGKTtLL~~IAn~i~~-n~~~~~~ivvLIgERpeEVtdm~rsVkgeVVasT~D~p~~~~ 484 (672)
T PRK12678 406 VIDLIMPIGKGQRGLIVSPPKAGKTTILQNIANAITT-NNPECHLMVVLVDERPEEVTDMQRSVKGEVIASTFDRPPSDH 484 (672)
T ss_pred eeeeecccccCCEeEEeCCCCCCHHHHHHHHHHHHhh-cCCCeEEEEEEEeCchhhHHHHHHhccceEEEECCCCCHHHH
Confidence 344444 223456789999999999999999987754 233333 344555544322 222222000100000111
Q ss_pred --chHHHHHHHHHHh-CCCeEEEEEeCCCCh
Q 010355 234 --ESGRARKLCERLK-KEKKILVILDDIWTN 261 (512)
Q Consensus 234 --~~~~~~~l~~~l~-~~k~~LlVlDdv~~~ 261 (512)
.......+.+++. .++.+||++|++...
T Consensus 485 ~~~a~~ai~~Ae~fre~G~dVlillDSlTR~ 515 (672)
T PRK12678 485 TTVAELAIERAKRLVELGKDVVVLLDSITRL 515 (672)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEEeCchHH
Confidence 1122334445553 589999999999543
No 419
>PRK13949 shikimate kinase; Provisional
Probab=95.49 E-value=0.013 Score=52.01 Aligned_cols=25 Identities=40% Similarity=0.405 Sum_probs=22.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhhh
Q 010355 171 HMIGAYGMAGVGKTMLVKEVARQAK 195 (512)
Q Consensus 171 ~vi~I~G~gGiGKTtLa~~v~~~~~ 195 (512)
+.|.|+|++|+|||||++.++....
T Consensus 2 ~~I~liG~~GsGKstl~~~La~~l~ 26 (169)
T PRK13949 2 ARIFLVGYMGAGKTTLGKALARELG 26 (169)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 3589999999999999999998875
No 420
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=95.48 E-value=0.051 Score=55.65 Aligned_cols=91 Identities=23% Similarity=0.382 Sum_probs=58.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCC-CHHHHHHHHHHHhCCCC-------CCCCch-----
Q 010355 169 DVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRP-DVKKIQGQIADKLGLKF-------YEESES----- 235 (512)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~ll~~i~~~l~~~~-------~~~~~~----- 235 (512)
.-.-++|.|.+|+|||||+..++....... -..++++-++... ...+++..+...-.... ...+..
T Consensus 143 kGQR~gIfa~~GvGKt~Ll~~i~~~~~~~~-~~v~V~~liGER~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~~a 221 (463)
T PRK09280 143 KGGKIGLFGGAGVGKTVLIQELINNIAKEH-GGYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARLRV 221 (463)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHHhcC-CCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHH
Confidence 346789999999999999999887765322 2456777776554 45666666655322210 111111
Q ss_pred -HHHHHHHHHHh--CCCeEEEEEeCCCC
Q 010355 236 -GRARKLCERLK--KEKKILVILDDIWT 260 (512)
Q Consensus 236 -~~~~~l~~~l~--~~k~~LlVlDdv~~ 260 (512)
.....+.++++ +++++||++|++..
T Consensus 222 ~~~a~tiAEyfrd~~G~~VLll~DslTR 249 (463)
T PRK09280 222 ALTGLTMAEYFRDVEGQDVLLFIDNIFR 249 (463)
T ss_pred HHHHHHHHHHHHHhcCCceEEEecchHH
Confidence 12334566663 57999999999954
No 421
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=95.48 E-value=0.011 Score=53.10 Aligned_cols=24 Identities=38% Similarity=0.527 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhh
Q 010355 171 HMIGAYGMAGVGKTMLVKEVARQA 194 (512)
Q Consensus 171 ~vi~I~G~gGiGKTtLa~~v~~~~ 194 (512)
++|+|+|+.|+|||||++.++...
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccC
Confidence 578999999999999999998754
No 422
>PRK15453 phosphoribulokinase; Provisional
Probab=95.48 E-value=0.093 Score=50.00 Aligned_cols=28 Identities=18% Similarity=0.342 Sum_probs=24.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHhhh
Q 010355 168 PDVHMIGAYGMAGVGKTMLVKEVARQAK 195 (512)
Q Consensus 168 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 195 (512)
....+|+|.|.+|+||||+++.+...+.
T Consensus 3 ~k~piI~ItG~SGsGKTTva~~l~~if~ 30 (290)
T PRK15453 3 AKHPIIAVTGSSGAGTTTVKRAFEKIFR 30 (290)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3468999999999999999999987664
No 423
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=95.48 E-value=0.068 Score=50.50 Aligned_cols=25 Identities=20% Similarity=0.324 Sum_probs=22.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhhh
Q 010355 172 MIGAYGMAGVGKTMLVKEVARQAKA 196 (512)
Q Consensus 172 vi~I~G~gGiGKTtLa~~v~~~~~~ 196 (512)
+|+|.|.+|+||||+++.+....+.
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l~~ 25 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIFAR 25 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHh
Confidence 5899999999999999999987753
No 424
>TIGR01040 V-ATPase_V1_B V-type (H+)-ATPase V1, B subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=95.47 E-value=0.046 Score=55.65 Aligned_cols=92 Identities=22% Similarity=0.229 Sum_probs=59.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhhhc-----------CCCCeEEEEEeCCCCCHHHHHHHHHHHhC-CCC-------
Q 010355 169 DVHMIGAYGMAGVGKTMLVKEVARQAKAD-----------KLFDEVVYAEVSQRPDVKKIQGQIADKLG-LKF------- 229 (512)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-----------~~f~~~~wv~~~~~~~~~~ll~~i~~~l~-~~~------- 229 (512)
.-.-++|.|-+|+|||||+..++++.... ..-..++++-++......+.+...+..-+ +..
T Consensus 140 ~GQRigIfagsGvGKs~L~~~i~~~~~~~~~~~aD~~~~~~~~~v~V~a~IGerre~~efi~~~l~~~g~l~rtvvv~at 219 (466)
T TIGR01040 140 RGQKIPIFSAAGLPHNEIAAQICRQAGLVKLPTKDVHDGHEDNFAIVFAAMGVNMETARFFKQDFEENGSMERVCLFLNL 219 (466)
T ss_pred cCCeeeeecCCCCCHHHHHHHHHHhhccccccccccccccCCceEEEEEEeeeehHHHHHHHHHHHhcCCcceEEEEEEC
Confidence 34568899999999999999998876510 01115677777877666666666665544 221
Q ss_pred CCCCch------HHHHHHHHHHh--CCCeEEEEEeCCCC
Q 010355 230 YEESES------GRARKLCERLK--KEKKILVILDDIWT 260 (512)
Q Consensus 230 ~~~~~~------~~~~~l~~~l~--~~k~~LlVlDdv~~ 260 (512)
...+.. .....+.++++ +++++||++||+..
T Consensus 220 sd~p~~~R~~a~~~a~tiAEyfr~~~G~~VLl~~DslTr 258 (466)
T TIGR01040 220 ANDPTIERIITPRLALTTAEYLAYQCEKHVLVILTDMSS 258 (466)
T ss_pred CCCCHHHHHHHHhhhHHHHHHHHHhcCCcEEEeccChHH
Confidence 111111 12345667776 47999999999953
No 425
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=95.46 E-value=0.028 Score=49.02 Aligned_cols=33 Identities=24% Similarity=0.343 Sum_probs=27.6
Q ss_pred hcCCCceEEEEEcCCCCcHHHHHHHHHHhhhhc
Q 010355 165 LKNPDVHMIGAYGMAGVGKTMLVKEVARQAKAD 197 (512)
Q Consensus 165 L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~ 197 (512)
+...+..+|-+.|.+|+||||||..+.......
T Consensus 18 ~~~~~~~viW~TGLSGsGKSTiA~ale~~L~~~ 50 (197)
T COG0529 18 LKGQKGAVIWFTGLSGSGKSTIANALEEKLFAK 50 (197)
T ss_pred HhCCCCeEEEeecCCCCCHHHHHHHHHHHHHHc
Confidence 344566799999999999999999999988643
No 426
>PRK03846 adenylylsulfate kinase; Provisional
Probab=95.46 E-value=0.023 Score=51.95 Aligned_cols=28 Identities=14% Similarity=0.232 Sum_probs=24.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHhhh
Q 010355 168 PDVHMIGAYGMAGVGKTMLVKEVARQAK 195 (512)
Q Consensus 168 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 195 (512)
.+..+|+|+|++|+||||||+.+.....
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l~ 49 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEALH 49 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4568999999999999999999998764
No 427
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=95.44 E-value=0.042 Score=55.95 Aligned_cols=89 Identities=17% Similarity=0.271 Sum_probs=53.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCC-CCHHHHHHHHHHHhCCC-------CCCCCch-----
Q 010355 169 DVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQR-PDVKKIQGQIADKLGLK-------FYEESES----- 235 (512)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-~~~~~ll~~i~~~l~~~-------~~~~~~~----- 235 (512)
.-..++|.|..|+|||||++.++.... .+..+++.++.. ....+++.+....-... ....+..
T Consensus 154 ~GqrigI~G~sG~GKSTLL~~I~~~~~----~d~~vi~~iGeRgrEv~efl~~~~~~~~~~rtv~vv~tsd~p~~~r~~a 229 (433)
T PRK07594 154 EGQRVGIFSAPGVGKSTLLAMLCNAPD----ADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRA 229 (433)
T ss_pred CCCEEEEECCCCCCccHHHHHhcCCCC----CCEEEEEEECCCchHHHHHHHHhhccCCcceEEEEEECCCCCHHHHHHH
Confidence 446889999999999999998886543 444555555554 34445566553211110 0011111
Q ss_pred -HHHHHHHHHHh-CCCeEEEEEeCCCCh
Q 010355 236 -GRARKLCERLK-KEKKILVILDDIWTN 261 (512)
Q Consensus 236 -~~~~~l~~~l~-~~k~~LlVlDdv~~~ 261 (512)
.....+.++++ +++++||++||+...
T Consensus 230 ~~~a~tiAEyfrd~G~~VLl~~Dsltr~ 257 (433)
T PRK07594 230 LFVATTIAEFFRDNGKRVVLLADSLTRY 257 (433)
T ss_pred HHHHHHHHHHHHHCCCcEEEEEeCHHHH
Confidence 12334555554 578999999999543
No 428
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.44 E-value=0.1 Score=49.84 Aligned_cols=89 Identities=16% Similarity=0.234 Sum_probs=51.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCC-CHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHhC
Q 010355 169 DVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRP-DVKKIQGQIADKLGLKFYEESESGRARKLCERLKK 247 (512)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~ll~~i~~~l~~~~~~~~~~~~~~~l~~~l~~ 247 (512)
...+++++|.+|+||||++..+......+ -..+.+++..... ....-++..+..++.+.........+......+..
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~l~~~--~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~ 151 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQFHGK--KKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKE 151 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHHHc--CCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHh
Confidence 44799999999999999999988776432 2245556554321 22233334444555443332223333344444432
Q ss_pred -CCeEEEEEeCCC
Q 010355 248 -EKKILVILDDIW 259 (512)
Q Consensus 248 -~k~~LlVlDdv~ 259 (512)
.+.=++++|..-
T Consensus 152 ~~~~D~ViIDt~G 164 (270)
T PRK06731 152 EARVDYILIDTAG 164 (270)
T ss_pred cCCCCEEEEECCC
Confidence 244688888874
No 429
>PRK06936 type III secretion system ATPase; Provisional
Probab=95.44 E-value=0.088 Score=53.61 Aligned_cols=89 Identities=22% Similarity=0.384 Sum_probs=55.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCC-CHHHHHHHHHHHhCCCC-------CCCCchH----
Q 010355 169 DVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRP-DVKKIQGQIADKLGLKF-------YEESESG---- 236 (512)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~ll~~i~~~l~~~~-------~~~~~~~---- 236 (512)
+-..++|.|..|+|||||.+.+++... .+.++++-++... ...+++...+..-+... ...+...
T Consensus 161 ~Gq~~~I~G~sG~GKStLl~~Ia~~~~----~dv~V~~liGERgrEv~ef~~~~l~~~~l~rtvvv~atsd~p~~~R~~a 236 (439)
T PRK06936 161 EGQRMGIFAAAGGGKSTLLASLIRSAE----VDVTVLALIGERGREVREFIESDLGEEGLRKAVLVVATSDRPSMERAKA 236 (439)
T ss_pred CCCEEEEECCCCCChHHHHHHHhcCCC----CCEEEEEEEccCcHHHHHHHHHHhcccccceeEEEEECCCCCHHHHHHH
Confidence 446889999999999999999988754 3567777776654 44455544333222111 1111111
Q ss_pred --HHHHHHHHHh-CCCeEEEEEeCCCCh
Q 010355 237 --RARKLCERLK-KEKKILVILDDIWTN 261 (512)
Q Consensus 237 --~~~~l~~~l~-~~k~~LlVlDdv~~~ 261 (512)
....+.++++ .++++||++|++...
T Consensus 237 ~~~a~tiAEyfrd~G~~Vll~~DslTR~ 264 (439)
T PRK06936 237 GFVATSIAEYFRDQGKRVLLLMDSVTRF 264 (439)
T ss_pred HHHHHHHHHHHHHcCCCEEEeccchhHH
Confidence 1234555554 579999999999543
No 430
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=95.43 E-value=0.015 Score=52.89 Aligned_cols=26 Identities=31% Similarity=0.356 Sum_probs=23.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhhh
Q 010355 170 VHMIGAYGMAGVGKTMLVKEVARQAK 195 (512)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 195 (512)
..+|.|.|.+|+||||+|+.++....
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~~~ 28 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARHRA 28 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 46899999999999999999988753
No 431
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=95.43 E-value=0.011 Score=52.22 Aligned_cols=22 Identities=27% Similarity=0.475 Sum_probs=19.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHhh
Q 010355 173 IGAYGMAGVGKTMLVKEVARQA 194 (512)
Q Consensus 173 i~I~G~gGiGKTtLa~~v~~~~ 194 (512)
|.|+|++|+||||+|+.+....
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l 22 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRL 22 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999998775
No 432
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=95.41 E-value=0.014 Score=50.85 Aligned_cols=23 Identities=35% Similarity=0.439 Sum_probs=20.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHhhh
Q 010355 173 IGAYGMAGVGKTMLVKEVARQAK 195 (512)
Q Consensus 173 i~I~G~gGiGKTtLa~~v~~~~~ 195 (512)
|.|+|++|+||||+|+.++....
T Consensus 2 i~l~G~~GsGKstla~~la~~l~ 24 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKALG 24 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhC
Confidence 78999999999999999988764
No 433
>TIGR01039 atpD ATP synthase, F1 beta subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit.
Probab=95.40 E-value=0.12 Score=52.71 Aligned_cols=92 Identities=22% Similarity=0.354 Sum_probs=59.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCC-CHHHHHHHHHHHhCCCC-------CCCCch-----
Q 010355 169 DVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRP-DVKKIQGQIADKLGLKF-------YEESES----- 235 (512)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~ll~~i~~~l~~~~-------~~~~~~----- 235 (512)
.-.-++|.|.+|+|||||+..++...... +-..++++-++... ...+++..+...-.... ...+..
T Consensus 142 ~GQr~~If~~~G~GKt~L~~~~~~~~~~~-~~~v~V~alIGER~rEv~ef~~~~~~~~~l~rtvvV~atsd~p~~~R~~a 220 (461)
T TIGR01039 142 KGGKIGLFGGAGVGKTVLIQELINNIAKE-HGGYSVFAGVGERTREGNDLYHEMKESGVIDKTALVYGQMNEPPGARMRV 220 (461)
T ss_pred cCCEEEeecCCCCChHHHHHHHHHHHHhc-CCCeEEEEEecCCchHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHH
Confidence 34678999999999999999998776532 23467777776654 45667766654322211 111111
Q ss_pred -HHHHHHHHHHh--CCCeEEEEEeCCCCh
Q 010355 236 -GRARKLCERLK--KEKKILVILDDIWTN 261 (512)
Q Consensus 236 -~~~~~l~~~l~--~~k~~LlVlDdv~~~ 261 (512)
.....+.++++ +++++||++|++...
T Consensus 221 ~~~a~tiAEyfrd~~G~~VLll~DslTR~ 249 (461)
T TIGR01039 221 ALTGLTMAEYFRDEQGQDVLLFIDNIFRF 249 (461)
T ss_pred HHHHHHHHHHHHHhcCCeeEEEecchhHH
Confidence 12345666774 378999999999543
No 434
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=95.39 E-value=0.19 Score=52.91 Aligned_cols=118 Identities=22% Similarity=0.236 Sum_probs=64.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhhhhc-C-----CCCeEEEEEeCC-----C----------C-C-HHHHHHHHHHHhC
Q 010355 170 VHMIGAYGMAGVGKTMLVKEVARQAKAD-K-----LFDEVVYAEVSQ-----R----------P-D-VKKIQGQIADKLG 226 (512)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~-----~f~~~~wv~~~~-----~----------~-~-~~~ll~~i~~~l~ 226 (512)
-..|+|+|+.|+|||||.+.+....... . .--.+.|+.-.. . + . ...-.+..+..++
T Consensus 348 g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~v~igyf~Q~~~~l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f~ 427 (530)
T COG0488 348 GDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIGYFDQHRDELDPDKTVLEELSEGFPDGDEQEVRAYLGRFG 427 (530)
T ss_pred CCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCceEEEEEEehhhhcCccCcHHHHHHhhCccccHHHHHHHHHHcC
Confidence 3578999999999999999996654321 0 001122221111 0 0 1 1445555666666
Q ss_pred CCCCC-------CCchHHHHHHHHHHhCCCeEEEEEeCCCChhhhh---hhCCCCC-CCCeEEEEEeCCcchh
Q 010355 227 LKFYE-------ESESGRARKLCERLKKEKKILVILDDIWTNLDLE---NVGIPFG-VRGCRVLMTARSQDVL 288 (512)
Q Consensus 227 ~~~~~-------~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~~~---~l~~~~~-~~gs~iivTtR~~~v~ 288 (512)
.+... .+..+....++..+.-.++-+||||.-.+..++. .+...+. -+| .||+.|.++...
T Consensus 428 F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f~G-tvl~VSHDr~Fl 499 (530)
T COG0488 428 FTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDFEG-TVLLVSHDRYFL 499 (530)
T ss_pred CChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhCCC-eEEEEeCCHHHH
Confidence 55332 1222334444444444588999999875543322 2211122 234 488888887654
No 435
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=95.39 E-value=0.073 Score=55.79 Aligned_cols=86 Identities=16% Similarity=0.163 Sum_probs=52.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCC------------------
Q 010355 169 DVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIADKLGLKFY------------------ 230 (512)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~i~~~l~~~~~------------------ 230 (512)
.-+++.|.|.+|+||||||.+++..-.. +.-..++||+... ++.++.+. +..+|....
T Consensus 20 ~g~~~Li~G~pGsGKT~la~qfl~~g~~-~~ge~~lyvs~eE--~~~~l~~~-~~~~G~~~~~~~~~g~l~~~~~~~~~~ 95 (484)
T TIGR02655 20 IGRSTLVSGTSGTGKTLFSIQFLYNGII-HFDEPGVFVTFEE--SPQDIIKN-ARSFGWDLQKLVDEGKLFILDASPDPE 95 (484)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHH-hCCCCEEEEEEec--CHHHHHHH-HHHcCCCHHHHhhcCceEEEecCchhc
Confidence 3579999999999999999999765322 1125678888764 44454444 333443211
Q ss_pred ------CCCchHHHHHHHHHHhCCCeEEEEEeCC
Q 010355 231 ------EESESGRARKLCERLKKEKKILVILDDI 258 (512)
Q Consensus 231 ------~~~~~~~~~~l~~~l~~~k~~LlVlDdv 258 (512)
..........+...+..+++-.+|||-+
T Consensus 96 ~~~~~~~~~l~~~l~~i~~~ls~g~~qRVvIDSl 129 (484)
T TIGR02655 96 GQDVVGGFDLSALIERINYAIRKYKAKRVSIDSV 129 (484)
T ss_pred cccccccCCHHHHHHHHHHHHHHhCCcEEEEeeh
Confidence 0111234455556666666778899954
No 436
>PRK00300 gmk guanylate kinase; Provisional
Probab=95.37 E-value=0.015 Score=53.39 Aligned_cols=27 Identities=30% Similarity=0.369 Sum_probs=23.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhh
Q 010355 169 DVHMIGAYGMAGVGKTMLVKEVARQAK 195 (512)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 195 (512)
...+|+|+|++|+|||||++.++....
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 346899999999999999999988653
No 437
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=95.37 E-value=0.013 Score=50.80 Aligned_cols=24 Identities=21% Similarity=0.419 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhh
Q 010355 172 MIGAYGMAGVGKTMLVKEVARQAK 195 (512)
Q Consensus 172 vi~I~G~gGiGKTtLa~~v~~~~~ 195 (512)
+|.|+|.+|+||||||+.+.....
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l~ 24 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKLF 24 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHH
Confidence 478999999999999999998764
No 438
>PRK09099 type III secretion system ATPase; Provisional
Probab=95.37 E-value=0.047 Score=55.74 Aligned_cols=90 Identities=20% Similarity=0.272 Sum_probs=53.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCC-------CCCCch------
Q 010355 169 DVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIADKLGLKF-------YEESES------ 235 (512)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~i~~~l~~~~-------~~~~~~------ 235 (512)
.-..++|.|..|+|||||++.++..... -.++++..-.......++...+...-++.. ...+..
T Consensus 162 ~Gq~~~I~G~sG~GKTtLl~~ia~~~~~---d~~vi~~iGer~~ev~ef~~~~~~~~~l~rtvvv~~tsd~p~~~r~~a~ 238 (441)
T PRK09099 162 EGQRMGIFAPAGVGKSTLMGMFARGTQC---DVNVIALIGERGREVREFIELILGEDGMARSVVVCATSDRSSIERAKAA 238 (441)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCC---CeEEEEEEccChHHHHHHHHHHhhcCCcceEEEEEECCCCCHHHHHHHH
Confidence 4578899999999999999998875542 123444333333455555555544322211 111111
Q ss_pred HHHHHHHHHHh-CCCeEEEEEeCCCCh
Q 010355 236 GRARKLCERLK-KEKKILVILDDIWTN 261 (512)
Q Consensus 236 ~~~~~l~~~l~-~~k~~LlVlDdv~~~ 261 (512)
.....+.++++ +++++||++|++...
T Consensus 239 ~~a~tiAEyfrd~G~~VLl~~DslTr~ 265 (441)
T PRK09099 239 YVATAIAEYFRDRGLRVLLMMDSLTRF 265 (441)
T ss_pred HHHHHHHHHHHHcCCCEEEeccchhHH
Confidence 12334555554 578999999999543
No 439
>PTZ00185 ATPase alpha subunit; Provisional
Probab=95.36 E-value=0.099 Score=53.82 Aligned_cols=92 Identities=17% Similarity=0.198 Sum_probs=55.3
Q ss_pred CceEEEEEcCCCCcHHHHH-HHHHHhhhhc-----CCCCeEEEEEeCCCCCHHHHHHHHHHHhC-CCCC-------CCCc
Q 010355 169 DVHMIGAYGMAGVGKTMLV-KEVARQAKAD-----KLFDEVVYAEVSQRPDVKKIQGQIADKLG-LKFY-------EESE 234 (512)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa-~~v~~~~~~~-----~~f~~~~wv~~~~~~~~~~ll~~i~~~l~-~~~~-------~~~~ 234 (512)
.-.-++|.|..|+|||+|| ..+.++.... ..-..++++-+++..+...-+...+..-+ +... ..+.
T Consensus 188 RGQR~lIfGd~GtGKTtLAld~IinQ~~~~~~~~~~~~~v~VyvaIGeR~rEV~ei~~~L~e~GaL~~TvVV~AtAdep~ 267 (574)
T PTZ00185 188 RGQRELIVGDRQTGKTSIAVSTIINQVRINQQILSKNAVISIYVSIGQRCSNVARIHRLLRSYGALRYTTVMAATAAEPA 267 (574)
T ss_pred CCCEEEeecCCCCChHHHHHHHHHhhhhhccccccCCCCEEEEEEeccchHHHHHHHHHHHhcCCccceEEEEECCCCCH
Confidence 3456889999999999997 6667765321 23456788888887644333444444433 2110 1111
Q ss_pred hH------HHHHHHHHHh-CCCeEEEEEeCCCC
Q 010355 235 SG------RARKLCERLK-KEKKILVILDDIWT 260 (512)
Q Consensus 235 ~~------~~~~l~~~l~-~~k~~LlVlDdv~~ 260 (512)
.. ....+.+++. +++.+|||+||+..
T Consensus 268 ~~r~~Apy~a~tiAEYFrd~GkdVLiv~DDLTr 300 (574)
T PTZ00185 268 GLQYLAPYSGVTMGEYFMNRGRHCLCVYDDLSK 300 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCEEEEEcCchH
Confidence 11 1234555553 47899999999953
No 440
>PRK06851 hypothetical protein; Provisional
Probab=95.35 E-value=0.17 Score=50.47 Aligned_cols=43 Identities=26% Similarity=0.261 Sum_probs=31.8
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCC
Q 010355 167 NPDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQ 210 (512)
Q Consensus 167 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~ 210 (512)
.+-.+++.|.|.+|+|||||+++++.....+ -+...++-|...
T Consensus 211 ~~~~~~~~i~G~pG~GKstl~~~i~~~a~~~-G~~v~~~hC~~d 253 (367)
T PRK06851 211 EGVKNRYFLKGRPGTGKSTMLKKIAKAAEER-GFDVEVYHCGFD 253 (367)
T ss_pred cccceEEEEeCCCCCcHHHHHHHHHHHHHhC-CCeEEEEeCCCC
Confidence 3445889999999999999999999988654 355444444333
No 441
>PRK14737 gmk guanylate kinase; Provisional
Probab=95.35 E-value=0.016 Score=52.38 Aligned_cols=26 Identities=15% Similarity=0.304 Sum_probs=23.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhh
Q 010355 169 DVHMIGAYGMAGVGKTMLVKEVARQA 194 (512)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 194 (512)
+..+|.|+|++|+|||||++.+....
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcC
Confidence 45789999999999999999998764
No 442
>PRK13975 thymidylate kinase; Provisional
Probab=95.31 E-value=0.016 Score=52.69 Aligned_cols=25 Identities=32% Similarity=0.383 Sum_probs=23.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhhh
Q 010355 171 HMIGAYGMAGVGKTMLVKEVARQAK 195 (512)
Q Consensus 171 ~vi~I~G~gGiGKTtLa~~v~~~~~ 195 (512)
..|+|.|+.|+||||+++.++....
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~l~ 27 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEKLN 27 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5799999999999999999998876
No 443
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.31 E-value=0.037 Score=48.40 Aligned_cols=109 Identities=17% Similarity=0.228 Sum_probs=57.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCC--CHHHHHHHHHHHhCCCCCCCCc-hHHHHHHHHHHhC
Q 010355 171 HMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRP--DVKKIQGQIADKLGLKFYEESE-SGRARKLCERLKK 247 (512)
Q Consensus 171 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~--~~~~ll~~i~~~l~~~~~~~~~-~~~~~~l~~~l~~ 247 (512)
.+++|+|..|.|||||++.++.... ...+.+++.-.... ..... ...++.-.. .+. ....-.+...+..
T Consensus 26 ~~~~i~G~nGsGKStll~~l~g~~~---~~~G~i~~~~~~~~~~~~~~~----~~~i~~~~q-lS~G~~~r~~l~~~l~~ 97 (157)
T cd00267 26 EIVALVGPNGSGKSTLLRAIAGLLK---PTSGEILIDGKDIAKLPLEEL----RRRIGYVPQ-LSGGQRQRVALARALLL 97 (157)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC---CCccEEEECCEEcccCCHHHH----HhceEEEee-CCHHHHHHHHHHHHHhc
Confidence 6899999999999999999987653 24455554332111 11111 111221111 111 1122234444543
Q ss_pred CCeEEEEEeCCCChh---hhhhh---CCCCCCCCeEEEEEeCCcchh
Q 010355 248 EKKILVILDDIWTNL---DLENV---GIPFGVRGCRVLMTARSQDVL 288 (512)
Q Consensus 248 ~k~~LlVlDdv~~~~---~~~~l---~~~~~~~gs~iivTtR~~~v~ 288 (512)
.+-++++|...... ....+ .......+..+|++|......
T Consensus 98 -~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~ 143 (157)
T cd00267 98 -NPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELA 143 (157)
T ss_pred -CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHH
Confidence 57899999985332 11111 111112356788888876554
No 444
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=95.30 E-value=0.013 Score=49.98 Aligned_cols=24 Identities=33% Similarity=0.510 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhh
Q 010355 172 MIGAYGMAGVGKTMLVKEVARQAK 195 (512)
Q Consensus 172 vi~I~G~gGiGKTtLa~~v~~~~~ 195 (512)
.|+|+|+.|+|||||++.++....
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~~ 24 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEFD 24 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcCC
Confidence 378999999999999999987653
No 445
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=95.30 E-value=0.045 Score=55.10 Aligned_cols=46 Identities=28% Similarity=0.286 Sum_probs=35.7
Q ss_pred ccccchHHHHHHHHHhcC--------------CCceEEEEEcCCCCcHHHHHHHHHHhhh
Q 010355 150 AFESRMSTLNDVINALKN--------------PDVHMIGAYGMAGVGKTMLVKEVARQAK 195 (512)
Q Consensus 150 ~~~gR~~~l~~l~~~L~~--------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 195 (512)
.++|.+..+..+..++.+ ...+.|.++|++|+|||+||+.++....
T Consensus 16 ~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~ 75 (443)
T PRK05201 16 YIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLAN 75 (443)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 467888877777666532 0146789999999999999999998865
No 446
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=95.29 E-value=0.015 Score=50.65 Aligned_cols=20 Identities=40% Similarity=0.600 Sum_probs=18.7
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 010355 172 MIGAYGMAGVGKTMLVKEVA 191 (512)
Q Consensus 172 vi~I~G~gGiGKTtLa~~v~ 191 (512)
.|+|.|.||+||||++..+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 58999999999999999987
No 447
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=95.25 E-value=0.018 Score=50.24 Aligned_cols=28 Identities=32% Similarity=0.608 Sum_probs=25.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhhhhc
Q 010355 170 VHMIGAYGMAGVGKTMLVKEVARQAKAD 197 (512)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~ 197 (512)
.++++|+|..|+|||||+..+....+.+
T Consensus 2 ~~Il~ivG~k~SGKTTLie~lv~~L~~~ 29 (161)
T COG1763 2 MKILGIVGYKNSGKTTLIEKLVRKLKAR 29 (161)
T ss_pred CcEEEEEecCCCChhhHHHHHHHHHHhC
Confidence 4799999999999999999999998865
No 448
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=95.24 E-value=0.021 Score=52.57 Aligned_cols=27 Identities=30% Similarity=0.427 Sum_probs=23.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhh
Q 010355 169 DVHMIGAYGMAGVGKTMLVKEVARQAK 195 (512)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 195 (512)
.-.+++|+|.+|+|||||++.++-..+
T Consensus 32 ~Ge~lgivGeSGsGKSTL~r~l~Gl~~ 58 (252)
T COG1124 32 RGETLGIVGESGSGKSTLARLLAGLEK 58 (252)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhcccC
Confidence 346899999999999999999986543
No 449
>PRK04196 V-type ATP synthase subunit B; Provisional
Probab=95.24 E-value=0.063 Score=55.25 Aligned_cols=90 Identities=23% Similarity=0.277 Sum_probs=58.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhhhhc---CCCCeEEEEEeCCCC-CHHHHHHHHHHHhCCCC-------CCCCc----
Q 010355 170 VHMIGAYGMAGVGKTMLVKEVARQAKAD---KLFDEVVYAEVSQRP-DVKKIQGQIADKLGLKF-------YEESE---- 234 (512)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~---~~f~~~~wv~~~~~~-~~~~ll~~i~~~l~~~~-------~~~~~---- 234 (512)
-.-++|.|..|+|||+|+..+++..... ..+ .++++-+++.. ...+++..+...-.+.. ...+.
T Consensus 143 GQR~gIfgg~G~GKs~L~~~ia~~~~~d~~~~~~-v~V~~~iGeRgrEv~e~~~~~~~~~~l~rtvvV~atsd~p~~~R~ 221 (460)
T PRK04196 143 GQKLPIFSGSGLPHNELAAQIARQAKVLGEEENF-AVVFAAMGITFEEANFFMEDFEETGALERSVVFLNLADDPAIERI 221 (460)
T ss_pred CCEEEeeCCCCCCccHHHHHHHHhhhhccCCCce-EEEEEEeccccHHHHHHHHHHHhcCCcceEEEEEEcCCCCHHHHH
Confidence 4568899999999999999998876532 111 56677776654 55667776655422211 11111
Q ss_pred --hHHHHHHHHHHh--CCCeEEEEEeCCCC
Q 010355 235 --SGRARKLCERLK--KEKKILVILDDIWT 260 (512)
Q Consensus 235 --~~~~~~l~~~l~--~~k~~LlVlDdv~~ 260 (512)
......+.++++ +++++||++|++..
T Consensus 222 ~a~~~a~tiAEyfr~d~G~~VLli~DslTR 251 (460)
T PRK04196 222 LTPRMALTAAEYLAFEKGMHVLVILTDMTN 251 (460)
T ss_pred HHHHHHHHHHHHHHHhcCCcEEEEEcChHH
Confidence 112446677776 57999999999854
No 450
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=95.24 E-value=0.058 Score=51.61 Aligned_cols=116 Identities=19% Similarity=0.202 Sum_probs=58.2
Q ss_pred HHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCchHH
Q 010355 158 LNDVINALKNPDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIADKLGLKFYEESESGR 237 (512)
Q Consensus 158 l~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~i~~~l~~~~~~~~~~~~ 237 (512)
++.|..++ .....+|.|.|..|+||||++..+...... .-..++.+ ..+.... +..+ .++... .......
T Consensus 69 ~~~l~~~~-~~~~GlilisG~tGSGKTT~l~all~~i~~--~~~~iiti--Edp~E~~--~~~~-~q~~v~--~~~~~~~ 138 (264)
T cd01129 69 LEIFRKLL-EKPHGIILVTGPTGSGKTTTLYSALSELNT--PEKNIITV--EDPVEYQ--IPGI-NQVQVN--EKAGLTF 138 (264)
T ss_pred HHHHHHHH-hcCCCEEEEECCCCCcHHHHHHHHHhhhCC--CCCeEEEE--CCCceec--CCCc-eEEEeC--CcCCcCH
Confidence 33343443 344578999999999999999988776532 11223333 2221100 0000 111111 1111122
Q ss_pred HHHHHHHHhCCCeEEEEEeCCCChhhhhh-hCCCCCCCCeEEEEEeCCcc
Q 010355 238 ARKLCERLKKEKKILVILDDIWTNLDLEN-VGIPFGVRGCRVLMTARSQD 286 (512)
Q Consensus 238 ~~~l~~~l~~~k~~LlVlDdv~~~~~~~~-l~~~~~~~gs~iivTtR~~~ 286 (512)
...+...++ ..+=.|++..+.+...... +... ..|..++-|.....
T Consensus 139 ~~~l~~~lR-~~PD~i~vgEiR~~e~a~~~~~aa--~tGh~v~tTlHa~~ 185 (264)
T cd01129 139 ARGLRAILR-QDPDIIMVGEIRDAETAEIAVQAA--LTGHLVLSTLHTND 185 (264)
T ss_pred HHHHHHHhc-cCCCEEEeccCCCHHHHHHHHHHH--HcCCcEEEEeccCC
Confidence 334444454 4678899999988765443 3222 23434555555443
No 451
>PRK00698 tmk thymidylate kinase; Validated
Probab=95.23 E-value=0.055 Score=49.55 Aligned_cols=26 Identities=19% Similarity=0.332 Sum_probs=23.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhhhh
Q 010355 171 HMIGAYGMAGVGKTMLVKEVARQAKA 196 (512)
Q Consensus 171 ~vi~I~G~gGiGKTtLa~~v~~~~~~ 196 (512)
.+|+|.|+.|+||||+++.+.+....
T Consensus 4 ~~I~ieG~~gsGKsT~~~~L~~~l~~ 29 (205)
T PRK00698 4 MFITIEGIDGAGKSTQIELLKELLEQ 29 (205)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 68999999999999999999987753
No 452
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=95.22 E-value=0.025 Score=54.64 Aligned_cols=37 Identities=22% Similarity=0.355 Sum_probs=27.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeC
Q 010355 171 HMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVS 209 (512)
Q Consensus 171 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~ 209 (512)
+.|+|+|-||+||||++..++.....++ + .++-|+..
T Consensus 1 ~~ia~~gKGGVGKTT~a~nLA~~La~~G-~-~VlliD~D 37 (275)
T TIGR01287 1 RQIAIYGKGGIGKSTTTQNIAAALAEMG-K-KVMIVGCD 37 (275)
T ss_pred CeeEEeCCCcCcHHHHHHHHHHHHHHCC-C-eEEEEeCC
Confidence 4689999999999999999988776542 2 34444443
No 453
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=95.21 E-value=0.018 Score=50.28 Aligned_cols=25 Identities=28% Similarity=0.453 Sum_probs=22.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhhh
Q 010355 172 MIGAYGMAGVGKTMLVKEVARQAKA 196 (512)
Q Consensus 172 vi~I~G~gGiGKTtLa~~v~~~~~~ 196 (512)
+++|+|+.|+|||||+..+....+.
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~l~~ 25 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKALKA 25 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHh
Confidence 5789999999999999999998764
No 454
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=95.21 E-value=0.019 Score=51.19 Aligned_cols=26 Identities=27% Similarity=0.335 Sum_probs=22.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhhh
Q 010355 170 VHMIGAYGMAGVGKTMLVKEVARQAK 195 (512)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 195 (512)
...|+|+|+.|+|||||++.++....
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l~ 29 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQLN 29 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHcC
Confidence 35699999999999999999998754
No 455
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=95.21 E-value=0.018 Score=46.40 Aligned_cols=22 Identities=32% Similarity=0.306 Sum_probs=19.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHH
Q 010355 170 VHMIGAYGMAGVGKTMLVKEVA 191 (512)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~v~ 191 (512)
-..++|.|++|+|||||++.+.
T Consensus 15 ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 15 KVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CEEEEEEcCCCCCHHHHHHHhh
Confidence 3688999999999999999976
No 456
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=95.20 E-value=0.023 Score=53.40 Aligned_cols=33 Identities=24% Similarity=0.342 Sum_probs=23.0
Q ss_pred EEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeC
Q 010355 175 AYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVS 209 (512)
Q Consensus 175 I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~ 209 (512)
|+|++|+||||+++.+.+..... -..++-|++.
T Consensus 1 ViGpaGSGKTT~~~~~~~~~~~~--~~~~~~vNLD 33 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWLESN--GRDVYIVNLD 33 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHHTTT---S-EEEEE--
T ss_pred CCCCCCCCHHHHHHHHHHHHHhc--cCCceEEEcc
Confidence 68999999999999999988743 3345555554
No 457
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=95.19 E-value=0.016 Score=52.43 Aligned_cols=24 Identities=25% Similarity=0.430 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhh
Q 010355 171 HMIGAYGMAGVGKTMLVKEVARQA 194 (512)
Q Consensus 171 ~vi~I~G~gGiGKTtLa~~v~~~~ 194 (512)
.+++|+|+.|+|||||++.++...
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~~ 26 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQRE 26 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhccC
Confidence 478999999999999999997654
No 458
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=95.19 E-value=0.0098 Score=54.57 Aligned_cols=22 Identities=14% Similarity=0.199 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHH
Q 010355 171 HMIGAYGMAGVGKTMLVKEVAR 192 (512)
Q Consensus 171 ~vi~I~G~gGiGKTtLa~~v~~ 192 (512)
.+++|+|+.|.|||||.+.++.
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~~ 51 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIGL 51 (202)
T ss_pred eEEEEECCCCCccHHHHHHHHH
Confidence 7899999999999999999984
No 459
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=95.18 E-value=0.016 Score=51.03 Aligned_cols=21 Identities=33% Similarity=0.428 Sum_probs=17.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHh
Q 010355 173 IGAYGMAGVGKTMLVKEVARQ 193 (512)
Q Consensus 173 i~I~G~gGiGKTtLa~~v~~~ 193 (512)
|+|+|..|+|||||++.+...
T Consensus 2 I~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHc
Confidence 789999999999999999876
No 460
>PLN02200 adenylate kinase family protein
Probab=95.17 E-value=0.02 Score=53.67 Aligned_cols=27 Identities=15% Similarity=0.162 Sum_probs=23.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhh
Q 010355 169 DVHMIGAYGMAGVGKTMLVKEVARQAK 195 (512)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 195 (512)
...+|.|.|++|+||||+|+.++....
T Consensus 42 ~~~ii~I~G~PGSGKsT~a~~La~~~g 68 (234)
T PLN02200 42 TPFITFVLGGPGSGKGTQCEKIVETFG 68 (234)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 346889999999999999999987654
No 461
>PRK05688 fliI flagellum-specific ATP synthase; Validated
Probab=95.15 E-value=0.066 Score=54.69 Aligned_cols=89 Identities=24% Similarity=0.387 Sum_probs=52.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCC-CHHHHHHHHHHHhCCCCC-------CCCch-----
Q 010355 169 DVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRP-DVKKIQGQIADKLGLKFY-------EESES----- 235 (512)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~ll~~i~~~l~~~~~-------~~~~~----- 235 (512)
.-..++|+|..|+|||||++.++.... .+.++...++... ....+...+...-++... ..+..
T Consensus 167 ~GqrigI~G~sG~GKSTLl~~I~g~~~----~dv~V~g~Ig~rg~ev~~~~~~~~~~~~l~rsvvv~atsd~~p~~r~~a 242 (451)
T PRK05688 167 RGQRLGLFAGTGVGKSVLLGMMTRFTE----ADIIVVGLIGERGREVKEFIEHILGEEGLKRSVVVASPADDAPLMRLRA 242 (451)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC----CCEEEEEEeCcCcHhHHHHHHHHhhcCCccEEEEEEECCCCCHHHHHHH
Confidence 346789999999999999998876432 3344444444332 455555555544332210 11111
Q ss_pred -HHHHHHHHHHh-CCCeEEEEEeCCCCh
Q 010355 236 -GRARKLCERLK-KEKKILVILDDIWTN 261 (512)
Q Consensus 236 -~~~~~l~~~l~-~~k~~LlVlDdv~~~ 261 (512)
.....+.++++ +++++||++|++...
T Consensus 243 ~~~a~aiAEyfrd~G~~VLl~~DslTR~ 270 (451)
T PRK05688 243 AMYCTRIAEYFRDKGKNVLLLMDSLTRF 270 (451)
T ss_pred HHHHHHHHHHHHHCCCCEEEEecchhHH
Confidence 12234555554 579999999999543
No 462
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=95.13 E-value=0.031 Score=48.95 Aligned_cols=27 Identities=33% Similarity=0.535 Sum_probs=24.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhhhhc
Q 010355 171 HMIGAYGMAGVGKTMLVKEVARQAKAD 197 (512)
Q Consensus 171 ~vi~I~G~gGiGKTtLa~~v~~~~~~~ 197 (512)
+++.|+|..|+|||||+..+......+
T Consensus 2 ~vi~i~G~~gsGKTTli~~L~~~l~~~ 28 (159)
T cd03116 2 KVIGFVGYSGSGKTTLLEKLIPALSAR 28 (159)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 689999999999999999999887643
No 463
>PRK13946 shikimate kinase; Provisional
Probab=95.13 E-value=0.02 Score=51.67 Aligned_cols=26 Identities=19% Similarity=0.312 Sum_probs=23.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhhh
Q 010355 170 VHMIGAYGMAGVGKTMLVKEVARQAK 195 (512)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 195 (512)
.+.|.++|++|+||||+++.++....
T Consensus 10 ~~~I~l~G~~GsGKsti~~~LA~~Lg 35 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTVGRRLATMLG 35 (184)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 36799999999999999999998875
No 464
>PLN02348 phosphoribulokinase
Probab=95.10 E-value=0.046 Score=54.53 Aligned_cols=29 Identities=17% Similarity=0.327 Sum_probs=25.7
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHHHhhh
Q 010355 167 NPDVHMIGAYGMAGVGKTMLVKEVARQAK 195 (512)
Q Consensus 167 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 195 (512)
.+...+|+|.|.+|+||||||+.+...+.
T Consensus 46 ~~~p~IIGIaG~SGSGKSTfA~~L~~~Lg 74 (395)
T PLN02348 46 DDGTVVIGLAADSGCGKSTFMRRLTSVFG 74 (395)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 34678999999999999999999998875
No 465
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=95.08 E-value=2.6 Score=43.41 Aligned_cols=53 Identities=13% Similarity=0.160 Sum_probs=38.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHh
Q 010355 170 VHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIADKL 225 (512)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~i~~~l 225 (512)
..++.|.|.+|+|||++|..++.....+. -..++|++.. .+..++...++...
T Consensus 194 g~liviag~pg~GKT~~al~ia~~~a~~~-g~~v~~fSlE--m~~~~l~~Rl~~~~ 246 (421)
T TIGR03600 194 GDLIVIGARPSMGKTTLALNIAENVALRE-GKPVLFFSLE--MSAEQLGERLLASK 246 (421)
T ss_pred CceEEEEeCCCCCHHHHHHHHHHHHHHhC-CCcEEEEECC--CCHHHHHHHHHHHH
Confidence 36889999999999999999997654322 2356666543 46777777776543
No 466
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=95.08 E-value=0.071 Score=48.82 Aligned_cols=27 Identities=15% Similarity=0.337 Sum_probs=23.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHhh
Q 010355 168 PDVHMIGAYGMAGVGKTMLVKEVARQA 194 (512)
Q Consensus 168 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 194 (512)
.....|+|+|.+|+|||||...+....
T Consensus 39 ~~~~~I~iiG~~g~GKStLl~~l~~~~ 65 (204)
T cd01878 39 SGIPTVALVGYTNAGKSTLFNALTGAD 65 (204)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhcch
Confidence 445789999999999999999988753
No 467
>CHL00060 atpB ATP synthase CF1 beta subunit
Probab=95.07 E-value=0.097 Score=53.88 Aligned_cols=91 Identities=22% Similarity=0.341 Sum_probs=58.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCC-CHHHHHHHHHHHhCCCC--------------CCCC
Q 010355 169 DVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRP-DVKKIQGQIADKLGLKF--------------YEES 233 (512)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~ll~~i~~~l~~~~--------------~~~~ 233 (512)
.-.-++|.|.+|+|||+|+..+...... .+-+.++++-++... ...+++..+...-.... ...+
T Consensus 160 kGQR~gIfgg~GvGKs~L~~~~~~~~~~-~~~dv~V~~lIGERgrEv~efi~~~~~~~~~~~~~~~~~rsvvv~atsd~p 238 (494)
T CHL00060 160 RGGKIGLFGGAGVGKTVLIMELINNIAK-AHGGVSVFGGVGERTREGNDLYMEMKESGVINEQNIAESKVALVYGQMNEP 238 (494)
T ss_pred cCCEEeeecCCCCChhHHHHHHHHHHHH-hcCCeEEEEEeccCchHHHHHHHHHHhcCccccCcccccceEEEEECCCCC
Confidence 3467899999999999999998877432 112678888887664 45667766655211110 0011
Q ss_pred ch------HHHHHHHHHHhC-C-CeEEEEEeCCCC
Q 010355 234 ES------GRARKLCERLKK-E-KKILVILDDIWT 260 (512)
Q Consensus 234 ~~------~~~~~l~~~l~~-~-k~~LlVlDdv~~ 260 (512)
.. .....+.++++. + +++||++||+..
T Consensus 239 ~~~R~~a~~~A~tiAEyfrd~g~~~VLll~DslTR 273 (494)
T CHL00060 239 PGARMRVGLTALTMAEYFRDVNKQDVLLFIDNIFR 273 (494)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCEEEEcccchH
Confidence 11 223456777753 4 499999999954
No 468
>PRK14738 gmk guanylate kinase; Provisional
Probab=95.07 E-value=0.022 Score=52.42 Aligned_cols=26 Identities=19% Similarity=0.359 Sum_probs=22.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHh
Q 010355 168 PDVHMIGAYGMAGVGKTMLVKEVARQ 193 (512)
Q Consensus 168 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 193 (512)
...+.|+|+|++|+|||||++.+...
T Consensus 11 ~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 11 AKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 35688999999999999999998754
No 469
>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=95.06 E-value=0.1 Score=53.10 Aligned_cols=88 Identities=27% Similarity=0.389 Sum_probs=51.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCC-CHHHHHHHHHHHhCCC-------CCCCCch-----
Q 010355 169 DVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRP-DVKKIQGQIADKLGLK-------FYEESES----- 235 (512)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~ll~~i~~~l~~~-------~~~~~~~----- 235 (512)
.-..++|.|..|+|||||++.++.... .+..+...++... ...++...+...-... ....+..
T Consensus 136 ~Gq~~~I~G~sG~GKTtLl~~I~~~~~----~~~~vi~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~tsd~~~~~r~~a 211 (411)
T TIGR03496 136 RGQRMGIFAGSGVGKSTLLGMMARYTE----ADVVVVGLIGERGREVKEFIEDILGEEGLARSVVVAATADESPLMRLRA 211 (411)
T ss_pred cCcEEEEECCCCCCHHHHHHHHhcCCC----CCEEEEEEEecChHHHHHHHHHHhhCCCcceEEEEEECCCCCHHHHHHH
Confidence 346789999999999999988886543 2344445555433 3445555544332111 1111111
Q ss_pred -HHHHHHHHHHh-CCCeEEEEEeCCCC
Q 010355 236 -GRARKLCERLK-KEKKILVILDDIWT 260 (512)
Q Consensus 236 -~~~~~l~~~l~-~~k~~LlVlDdv~~ 260 (512)
.....+.++++ +++++||++||+..
T Consensus 212 ~~~a~tiAEyfr~~G~~Vll~~Dsltr 238 (411)
T TIGR03496 212 AFYATAIAEYFRDQGKDVLLLMDSLTR 238 (411)
T ss_pred HHHHHHHHHHHHHCCCCEEEEEeChHH
Confidence 12334555553 57899999999853
No 470
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=95.06 E-value=0.17 Score=49.58 Aligned_cols=89 Identities=25% Similarity=0.342 Sum_probs=52.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeC-CCCCHHHHHHHHHHHhCCCC-------CCCCch-----
Q 010355 169 DVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVS-QRPDVKKIQGQIADKLGLKF-------YEESES----- 235 (512)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~-~~~~~~~ll~~i~~~l~~~~-------~~~~~~----- 235 (512)
.-..++|.|..|+|||||++.++.... .+..+..-++ .......+.......-++.. ...+..
T Consensus 68 ~Gqri~I~G~sG~GKTtLl~~Ia~~~~----~~~~vi~~iGer~~ev~~~~~~~~~~~~l~rtvvv~~t~d~~~~~r~~~ 143 (326)
T cd01136 68 KGQRLGIFAGSGVGKSTLLGMIARGTT----ADVNVIALIGERGREVREFIEKDLGEEGLKRSVVVVATSDESPLLRVKA 143 (326)
T ss_pred CCcEEEEECCCCCChHHHHHHHhCCCC----CCEEEEEEEecCCccHHHHHHHHHhcCccceEEEEEcCCCCCHHHHHHH
Confidence 346789999999999999998887654 2333444444 33355555555554433211 111111
Q ss_pred -HHHHHHHHHHh-CCCeEEEEEeCCCCh
Q 010355 236 -GRARKLCERLK-KEKKILVILDDIWTN 261 (512)
Q Consensus 236 -~~~~~l~~~l~-~~k~~LlVlDdv~~~ 261 (512)
.....+.+++. +++.+||++|++...
T Consensus 144 ~~~a~~~AEyfr~~g~~Vll~~Dsltr~ 171 (326)
T cd01136 144 AYTATAIAEYFRDQGKDVLLLMDSLTRF 171 (326)
T ss_pred HHHHHHHHHHHHHcCCCeEEEeccchHH
Confidence 12234445553 578999999998543
No 471
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=95.05 E-value=0.12 Score=46.22 Aligned_cols=29 Identities=28% Similarity=0.421 Sum_probs=25.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHhhhh
Q 010355 168 PDVHMIGAYGMAGVGKTMLVKEVARQAKA 196 (512)
Q Consensus 168 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 196 (512)
..-.+++|.|+.|.||||+.+.++.-...
T Consensus 26 e~Gei~GlLG~NGAGKTT~LRmiatlL~P 54 (245)
T COG4555 26 EEGEITGLLGENGAGKTTLLRMIATLLIP 54 (245)
T ss_pred ccceEEEEEcCCCCCchhHHHHHHHhccC
Confidence 34589999999999999999999987653
No 472
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=95.04 E-value=0.042 Score=52.84 Aligned_cols=40 Identities=18% Similarity=0.328 Sum_probs=29.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCC
Q 010355 171 HMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRP 212 (512)
Q Consensus 171 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~ 212 (512)
++|+|.|-||+||||++..++...... -..++-|++....
T Consensus 2 ~~iav~~KGGvGKTT~~~nLA~~La~~--G~kVlliD~Dpq~ 41 (270)
T cd02040 2 RQIAIYGKGGIGKSTTTQNLSAALAEM--GKKVMIVGCDPKA 41 (270)
T ss_pred cEEEEEeCCcCCHHHHHHHHHHHHHhC--CCeEEEEEcCCCC
Confidence 568888999999999999998887643 2245556665443
No 473
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.03 E-value=0.02 Score=51.14 Aligned_cols=27 Identities=33% Similarity=0.539 Sum_probs=23.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhhhhc
Q 010355 171 HMIGAYGMAGVGKTMLVKEVARQAKAD 197 (512)
Q Consensus 171 ~vi~I~G~gGiGKTtLa~~v~~~~~~~ 197 (512)
+.|.+.|.+|+||||+|++++...+.+
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L~~~ 28 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKELRQE 28 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHh
Confidence 568899999999999999999887653
No 474
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=95.03 E-value=0.052 Score=49.46 Aligned_cols=107 Identities=20% Similarity=0.243 Sum_probs=53.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHh-
Q 010355 168 PDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIADKLGLKFYEESESGRARKLCERLK- 246 (512)
Q Consensus 168 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~i~~~l~~~~~~~~~~~~~~~l~~~l~- 246 (512)
++-+++.|.|++|+||||+++.+........ ..++++ ........ .+....+.... .+..+.....
T Consensus 16 ~~~~~~~l~G~aGtGKT~~l~~~~~~~~~~g--~~v~~~-apT~~Aa~----~L~~~~~~~a~------Ti~~~l~~~~~ 82 (196)
T PF13604_consen 16 SGDRVSVLQGPAGTGKTTLLKALAEALEAAG--KRVIGL-APTNKAAK----ELREKTGIEAQ------TIHSFLYRIPN 82 (196)
T ss_dssp CTCSEEEEEESTTSTHHHHHHHHHHHHHHTT----EEEE-ESSHHHHH----HHHHHHTS-EE------EHHHHTTEECC
T ss_pred cCCeEEEEEECCCCCHHHHHHHHHHHHHhCC--CeEEEE-CCcHHHHH----HHHHhhCcchh------hHHHHHhcCCc
Confidence 3457899999999999999999888776532 233333 33322222 23333332110 0000000000
Q ss_pred --------CCCeEEEEEeCCCCh--hhhhhhCCCCCCCCeEEEEEeCCcch
Q 010355 247 --------KEKKILVILDDIWTN--LDLENVGIPFGVRGCRVLMTARSQDV 287 (512)
Q Consensus 247 --------~~k~~LlVlDdv~~~--~~~~~l~~~~~~~gs~iivTtR~~~v 287 (512)
..++-+||+|.+... ..+..+.......|+++|+.-=..+.
T Consensus 83 ~~~~~~~~~~~~~vliVDEasmv~~~~~~~ll~~~~~~~~klilvGD~~QL 133 (196)
T PF13604_consen 83 GDDEGRPELPKKDVLIVDEASMVDSRQLARLLRLAKKSGAKLILVGDPNQL 133 (196)
T ss_dssp EECCSSCC-TSTSEEEESSGGG-BHHHHHHHHHHS-T-T-EEEEEE-TTSH
T ss_pred ccccccccCCcccEEEEecccccCHHHHHHHHHHHHhcCCEEEEECCcchh
Confidence 023459999999754 34444422223457888887655443
No 475
>PF02456 Adeno_IVa2: Adenovirus IVa2 protein; InterPro: IPR003389 Va2 protein can interact with the adenoviral packaging signal and this interaction involves DNA sequences that have previously been demonstrated to be required for packaging []. During the course of lytic infection, the adenovirus major late promoter (MLP) is induced to high levels after replication of viral DNA has started. IVa2 is a transcriptional activator of the major late promoter [].; GO: 0019083 viral transcription
Probab=95.03 E-value=0.46 Score=45.42 Aligned_cols=41 Identities=17% Similarity=0.245 Sum_probs=31.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeC
Q 010355 169 DVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVS 209 (512)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~ 209 (512)
+.-+.+|+|+.|+|||.|.+.+.......-....|+||.-.
T Consensus 86 qP~I~~VYGPTG~GKSqLlRNLis~~lI~P~PETVfFItP~ 126 (369)
T PF02456_consen 86 QPFIGVVYGPTGSGKSQLLRNLISCQLIQPPPETVFFITPQ 126 (369)
T ss_pred CceEEEEECCCCCCHHHHHHHhhhcCcccCCCCceEEECCC
Confidence 34566789999999999999998876665556778888643
No 476
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=95.02 E-value=0.048 Score=45.24 Aligned_cols=35 Identities=34% Similarity=0.392 Sum_probs=26.5
Q ss_pred HHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHhhhhc
Q 010355 161 VINALKNPDVHMIGAYGMAGVGKTMLVKEVARQAKAD 197 (512)
Q Consensus 161 l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~ 197 (512)
|...|. ...+|.+.|.=|+||||+++.++......
T Consensus 8 l~~~l~--~g~vi~L~GdLGaGKTtf~r~l~~~lg~~ 42 (123)
T PF02367_consen 8 LAQILK--PGDVILLSGDLGAGKTTFVRGLARALGID 42 (123)
T ss_dssp HHHHHS--S-EEEEEEESTTSSHHHHHHHHHHHTT--
T ss_pred HHHhCC--CCCEEEEECCCCCCHHHHHHHHHHHcCCC
Confidence 444443 34899999999999999999999987543
No 477
>PRK04182 cytidylate kinase; Provisional
Probab=95.02 E-value=0.022 Score=50.98 Aligned_cols=24 Identities=29% Similarity=0.419 Sum_probs=22.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhh
Q 010355 172 MIGAYGMAGVGKTMLVKEVARQAK 195 (512)
Q Consensus 172 vi~I~G~gGiGKTtLa~~v~~~~~ 195 (512)
+|+|.|+.|+||||+|+.++....
T Consensus 2 ~I~i~G~~GsGKstia~~la~~lg 25 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKLG 25 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 689999999999999999998764
No 478
>PRK05922 type III secretion system ATPase; Validated
Probab=95.01 E-value=0.17 Score=51.58 Aligned_cols=89 Identities=21% Similarity=0.315 Sum_probs=52.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCC-CCCHHHHHHHHHHHhCCCCC-------CCCch-----
Q 010355 169 DVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQ-RPDVKKIQGQIADKLGLKFY-------EESES----- 235 (512)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~-~~~~~~ll~~i~~~l~~~~~-------~~~~~----- 235 (512)
.-..++|.|..|+|||||.+.++.... .+..+++.++. .......+.+....+..... ..+..
T Consensus 156 ~GqrigI~G~nG~GKSTLL~~Ia~~~~----~d~gvi~liGerg~ev~eyl~q~~~~~~~~rTVlv~atsd~~~~~r~~a 231 (434)
T PRK05922 156 KGQRIGVFSEPGSGKSSLLSTIAKGSK----STINVIALIGERGREVREYIEQHKEGLAAQRTIIIASPAHETAPTKVIA 231 (434)
T ss_pred CCcEEEEECCCCCChHHHHHHHhccCC----CCceEEEEeCCCCchHHHHHHHHHhhccccceEEEEECCCCCHHHHHHH
Confidence 345689999999999999999887643 23334433433 23345555555443332211 11111
Q ss_pred -HHHHHHHHHHh-CCCeEEEEEeCCCCh
Q 010355 236 -GRARKLCERLK-KEKKILVILDDIWTN 261 (512)
Q Consensus 236 -~~~~~l~~~l~-~~k~~LlVlDdv~~~ 261 (512)
.....+.++++ .++++||++|++...
T Consensus 232 ~~~a~tiAEyfrd~G~~VLl~~DslTR~ 259 (434)
T PRK05922 232 GRAAMTIAEYFRDQGHRVLFIMDSLSRW 259 (434)
T ss_pred HHHHHHHHHHHHHcCCCEEEeccchhHH
Confidence 12334556664 579999999999543
No 479
>PRK14532 adenylate kinase; Provisional
Probab=95.00 E-value=0.02 Score=51.80 Aligned_cols=23 Identities=17% Similarity=0.289 Sum_probs=20.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHhhh
Q 010355 173 IGAYGMAGVGKTMLVKEVARQAK 195 (512)
Q Consensus 173 i~I~G~gGiGKTtLa~~v~~~~~ 195 (512)
|.|.|++|+||||+|+.++....
T Consensus 3 i~~~G~pGsGKsT~a~~la~~~g 25 (188)
T PRK14532 3 LILFGPPAAGKGTQAKRLVEERG 25 (188)
T ss_pred EEEECCCCCCHHHHHHHHHHHcC
Confidence 78899999999999999987653
No 480
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=95.00 E-value=0.024 Score=52.37 Aligned_cols=26 Identities=23% Similarity=0.485 Sum_probs=22.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhhhh
Q 010355 171 HMIGAYGMAGVGKTMLVKEVARQAKA 196 (512)
Q Consensus 171 ~vi~I~G~gGiGKTtLa~~v~~~~~~ 196 (512)
++|+|.|-||+||||++..++.....
T Consensus 1 ~~iav~gKGGvGKTt~~~nLA~~la~ 26 (212)
T cd02117 1 RQIAIYGKGGIGKSTTSQNLSAALAE 26 (212)
T ss_pred CEEEEECCCcCcHHHHHHHHHHHHHH
Confidence 47899999999999999988887764
No 481
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=94.99 E-value=0.13 Score=49.02 Aligned_cols=95 Identities=15% Similarity=0.206 Sum_probs=54.7
Q ss_pred ceEEEEEcCCCCcHHHHH-HHHHHhhhhcCCCCeE-EEEEeCCCC-CHHHHHHHHHHHhCCC-------CCCCCchH---
Q 010355 170 VHMIGAYGMAGVGKTMLV-KEVARQAKADKLFDEV-VYAEVSQRP-DVKKIQGQIADKLGLK-------FYEESESG--- 236 (512)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa-~~v~~~~~~~~~f~~~-~wv~~~~~~-~~~~ll~~i~~~l~~~-------~~~~~~~~--- 236 (512)
-+-++|.|.+|+|||+|| ..+.+... -+.+ +++-++... ...+++..+...-... ....+...
T Consensus 69 GQr~~Ifg~~g~GKt~L~l~~i~~~~~----~~v~~V~~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~ 144 (274)
T cd01132 69 GQRELIIGDRQTGKTAIAIDTIINQKG----KKVYCIYVAIGQKASTVAQVVKTLEEHGAMEYTIVVAATASDPAPLQYL 144 (274)
T ss_pred CCEEEeeCCCCCCccHHHHHHHHHhcC----CCeEEEEEecccchHHHHHHHHHHHhcCccceeEEEEeCCCCchhHHHH
Confidence 356889999999999996 55555432 2333 666666654 4556666665432111 01111111
Q ss_pred ---HHHHHHHHHh-CCCeEEEEEeCCCCh-hhhhhhC
Q 010355 237 ---RARKLCERLK-KEKKILVILDDIWTN-LDLENVG 268 (512)
Q Consensus 237 ---~~~~l~~~l~-~~k~~LlVlDdv~~~-~~~~~l~ 268 (512)
....+.+++. +++.+|||+||+... ..+..+.
T Consensus 145 a~~~a~aiAE~fr~~G~~Vlvl~DslTr~A~A~rEis 181 (274)
T cd01132 145 APYTGCAMGEYFMDNGKHALIIYDDLSKQAVAYRQMS 181 (274)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEEcChHHHHHHHHHHH
Confidence 1234444554 478999999999654 3455553
No 482
>PRK13948 shikimate kinase; Provisional
Probab=94.99 E-value=0.025 Score=50.70 Aligned_cols=27 Identities=26% Similarity=0.368 Sum_probs=24.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhh
Q 010355 169 DVHMIGAYGMAGVGKTMLVKEVARQAK 195 (512)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 195 (512)
..+.|.++|+.|+||||+++.++....
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~~lg 35 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSRALM 35 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHcC
Confidence 457899999999999999999998765
No 483
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=94.99 E-value=0.11 Score=52.78 Aligned_cols=89 Identities=24% Similarity=0.310 Sum_probs=51.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCC-------CCCCch------
Q 010355 169 DVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIADKLGLKF-------YEESES------ 235 (512)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~i~~~l~~~~-------~~~~~~------ 235 (512)
.-..++|.|..|+|||||++.++..... ...++.+.-.......++....+..-+... ...+..
T Consensus 139 ~Gq~i~I~G~sG~GKTtLl~~I~~~~~~---~~gvi~~iGer~~ev~~~~~~~l~~~~~~~tvvv~atsd~~~~~r~~a~ 215 (418)
T TIGR03498 139 RGQRLGIFAGSGVGKSTLLSMLARNTDA---DVVVIALVGERGREVREFLEDDLGEEGLKRSVVVVATSDESPLMRRQAA 215 (418)
T ss_pred CCcEEEEECCCCCChHHHHHHHhCCCCC---CEEEEEEEeeechHHHHHHHHhhhccccceeEEEEECCCCCHHHHHHHH
Confidence 3467899999999999999888865432 223333222233345555555444322221 111111
Q ss_pred HHHHHHHHHHh-CCCeEEEEEeCCCC
Q 010355 236 GRARKLCERLK-KEKKILVILDDIWT 260 (512)
Q Consensus 236 ~~~~~l~~~l~-~~k~~LlVlDdv~~ 260 (512)
.....+.++++ +++++||++|++..
T Consensus 216 ~~a~~iAEyfrd~G~~Vll~~DslTr 241 (418)
T TIGR03498 216 YTATAIAEYFRDQGKDVLLLMDSVTR 241 (418)
T ss_pred HHHHHHHHHHHHcCCCEEEeccchhH
Confidence 12334555554 47899999999954
No 484
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=94.98 E-value=0.087 Score=47.97 Aligned_cols=23 Identities=35% Similarity=0.512 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHH
Q 010355 170 VHMIGAYGMAGVGKTMLVKEVAR 192 (512)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~v~~ 192 (512)
..+|+|+|+.|+||||+|+.+..
T Consensus 2 ~~iIglTG~igsGKStva~~~~~ 24 (201)
T COG0237 2 MLIIGLTGGIGSGKSTVAKILAE 24 (201)
T ss_pred ceEEEEecCCCCCHHHHHHHHHH
Confidence 36899999999999999998876
No 485
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=94.96 E-value=0.08 Score=53.94 Aligned_cols=88 Identities=20% Similarity=0.329 Sum_probs=47.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCC-CCCHHHHHHHHHHHhCCC-------CCCCCc------
Q 010355 169 DVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQ-RPDVKKIQGQIADKLGLK-------FYEESE------ 234 (512)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~-~~~~~~ll~~i~~~l~~~-------~~~~~~------ 234 (512)
.-..++|.|..|+|||||++.++.... .+..+...+.. ......+....+..-+.. ....+.
T Consensus 154 ~GQ~igI~G~sGaGKSTLl~~I~g~~~----~dv~vig~IGerg~ev~ef~~~~l~~~gl~rsvvv~~~~d~s~~~rl~a 229 (434)
T PRK07196 154 KGQRVGLMAGSGVGKSVLLGMITRYTQ----ADVVVVGLIGERGREVKEFIEHSLQAAGMAKSVVVAAPADESPLMRIKA 229 (434)
T ss_pred cceEEEEECCCCCCccHHHHHHhcccC----CCeEEEEEEeeecHHHHHHHHHHhhhcccceEEEEEecCCCChhhhHHH
Confidence 447899999999999999998877543 23322232322 223333333333332221 111111
Q ss_pred hHHHHHHHHHHh-CCCeEEEEEeCCCC
Q 010355 235 SGRARKLCERLK-KEKKILVILDDIWT 260 (512)
Q Consensus 235 ~~~~~~l~~~l~-~~k~~LlVlDdv~~ 260 (512)
......+.+++. .++++||++|++..
T Consensus 230 ~e~a~~iAEyfr~~g~~Vll~~Dsltr 256 (434)
T PRK07196 230 TELCHAIATYYRDKGHDVLLLVDSLTR 256 (434)
T ss_pred HHHHHHHHHHhhhccCCEEEeecchhH
Confidence 112223333332 47899999999854
No 486
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=94.96 E-value=0.035 Score=53.75 Aligned_cols=36 Identities=22% Similarity=0.350 Sum_probs=26.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEe
Q 010355 171 HMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEV 208 (512)
Q Consensus 171 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~ 208 (512)
++|+|+|-||+||||++..++......+ ..++-|+.
T Consensus 2 ~~i~~~gKGGVGKTT~a~nLA~~La~~G--~rVLliD~ 37 (279)
T PRK13230 2 RKFCFYGKGGIGKSTTVCNIAAALAESG--KKVLVVGC 37 (279)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHhCC--CEEEEEee
Confidence 5788999999999999999888776432 23444444
No 487
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=94.96 E-value=0.026 Score=48.70 Aligned_cols=25 Identities=28% Similarity=0.450 Sum_probs=22.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhh
Q 010355 170 VHMIGAYGMAGVGKTMLVKEVARQA 194 (512)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~v~~~~ 194 (512)
..+++|+|.+|+||||+.+.+....
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~~l 28 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALKEL 28 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHHHH
Confidence 5799999999999999998877665
No 488
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=94.96 E-value=0.019 Score=54.61 Aligned_cols=25 Identities=36% Similarity=0.597 Sum_probs=22.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhhh
Q 010355 172 MIGAYGMAGVGKTMLVKEVARQAKA 196 (512)
Q Consensus 172 vi~I~G~gGiGKTtLa~~v~~~~~~ 196 (512)
.|.|+|++|+||||+|+.++.....
T Consensus 1 LIvl~G~pGSGKST~a~~La~~l~~ 25 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKKLSE 25 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 3789999999999999999987753
No 489
>PRK06761 hypothetical protein; Provisional
Probab=94.95 E-value=0.047 Score=52.35 Aligned_cols=26 Identities=23% Similarity=0.316 Sum_probs=23.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhhhh
Q 010355 171 HMIGAYGMAGVGKTMLVKEVARQAKA 196 (512)
Q Consensus 171 ~vi~I~G~gGiGKTtLa~~v~~~~~~ 196 (512)
++|.|.|++|+||||+++.++.....
T Consensus 4 ~lIvI~G~~GsGKTTla~~L~~~L~~ 29 (282)
T PRK06761 4 KLIIIEGLPGFGKSTTAKMLNDILSQ 29 (282)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCc
Confidence 58999999999999999999988763
No 490
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=94.94 E-value=0.026 Score=44.37 Aligned_cols=25 Identities=36% Similarity=0.453 Sum_probs=22.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhhh
Q 010355 172 MIGAYGMAGVGKTMLVKEVARQAKA 196 (512)
Q Consensus 172 vi~I~G~gGiGKTtLa~~v~~~~~~ 196 (512)
++.+.|.+|+||||++..++.....
T Consensus 1 ~~~~~g~~G~Gktt~~~~l~~~l~~ 25 (99)
T cd01983 1 VIVVTGKGGVGKTTLAANLAAALAK 25 (99)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4788999999999999999998764
No 491
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=94.93 E-value=0.022 Score=51.76 Aligned_cols=23 Identities=26% Similarity=0.317 Sum_probs=20.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHhhh
Q 010355 173 IGAYGMAGVGKTMLVKEVARQAK 195 (512)
Q Consensus 173 i~I~G~gGiGKTtLa~~v~~~~~ 195 (512)
|.|.|++|+||||+|+.++....
T Consensus 2 I~i~G~pGsGKst~a~~La~~~~ 24 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKYG 24 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999988753
No 492
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=94.91 E-value=0.025 Score=50.18 Aligned_cols=23 Identities=35% Similarity=0.462 Sum_probs=0.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhh
Q 010355 172 MIGAYGMAGVGKTMLVKEVARQA 194 (512)
Q Consensus 172 vi~I~G~gGiGKTtLa~~v~~~~ 194 (512)
+|.|.|+.|+||||+|+.+.+..
T Consensus 2 iI~i~G~~GSGKstia~~la~~l 24 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAEKL 24 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
No 493
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=94.90 E-value=0.022 Score=52.74 Aligned_cols=20 Identities=30% Similarity=0.637 Sum_probs=0.0
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 010355 172 MIGAYGMAGVGKTMLVKEVA 191 (512)
Q Consensus 172 vi~I~G~gGiGKTtLa~~v~ 191 (512)
.|+|+|++|+|||||.+.++
T Consensus 31 fvsilGpSGcGKSTLLriiA 50 (248)
T COG1116 31 FVAILGPSGCGKSTLLRLIA 50 (248)
T ss_pred EEEEECCCCCCHHHHHHHHh
No 494
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=94.88 E-value=0.04 Score=50.52 Aligned_cols=113 Identities=14% Similarity=0.094 Sum_probs=0.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHh----
Q 010355 171 HMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIADKLGLKFYEESESGRARKLCERLK---- 246 (512)
Q Consensus 171 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~i~~~l~~~~~~~~~~~~~~~l~~~l~---- 246 (512)
+++.|.|+.|.||||+.+.++...--.+.--.+ ......-.+...|...++..............=..++.
T Consensus 30 ~~~~l~G~n~~GKstll~~i~~~~~la~~G~~v-----pa~~~~l~~~d~I~~~~~~~d~~~~~~S~fs~e~~~~~~il~ 104 (204)
T cd03282 30 RFHIITGPNMSGKSTYLKQIALLAIMAQIGCFV-----PAEYATLPIFNRLLSRLSNDDSMERNLSTFASEMSETAYILD 104 (204)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHHHcCCCc-----chhhcCccChhheeEecCCccccchhhhHHHHHHHHHHHHHH
Q ss_pred -CCCeEEEEEeCC---CChhhhhhhCCCCC----CCCeEEEEEeCCcchh
Q 010355 247 -KEKKILVILDDI---WTNLDLENVGIPFG----VRGCRVLMTARSQDVL 288 (512)
Q Consensus 247 -~~k~~LlVlDdv---~~~~~~~~l~~~~~----~~gs~iivTtR~~~v~ 288 (512)
..++-|+++|.. .+..+...+..... ..++.+|+||.....+
T Consensus 105 ~~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~~~~~~~i~~TH~~~l~ 154 (204)
T cd03282 105 YADGDSLVLIDELGRGTSSADGFAISLAILECLIKKESTVFFATHFRDIA 154 (204)
T ss_pred hcCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCEEEEECChHHHH
No 495
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=94.86 E-value=0.034 Score=53.32 Aligned_cols=34 Identities=21% Similarity=0.295 Sum_probs=0.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEE
Q 010355 170 VHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVV 204 (512)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~ 204 (512)
.++|+|+|.+|+|||||+..+...+..+. .-+++
T Consensus 1 M~~i~i~G~~gSGKTTLi~~Li~~L~~~G-~V~~I 34 (274)
T PRK14493 1 MKVLSIVGYKATGKTTLVERLVDRLSGRG-RVGTV 34 (274)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhCC-CEEEE
No 496
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=94.85 E-value=0.026 Score=50.43 Aligned_cols=25 Identities=20% Similarity=0.312 Sum_probs=0.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhhh
Q 010355 171 HMIGAYGMAGVGKTMLVKEVARQAK 195 (512)
Q Consensus 171 ~vi~I~G~gGiGKTtLa~~v~~~~~ 195 (512)
.+++|+|++|+|||||++.++....
T Consensus 4 e~i~l~G~sGsGKSTl~~~la~~l~ 28 (176)
T PRK09825 4 ESYILMGVSGSGKSLIGSKIAALFS 28 (176)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcC
No 497
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=94.84 E-value=0.016 Score=63.38 Aligned_cols=78 Identities=26% Similarity=0.290 Sum_probs=0.0
Q ss_pred hhhhhhhhcCCCcccccchhhhccCCcCCCCCCCCCCCCCCCCCCCcccCCCCCCCcCCCCCCCCccCCCCCccccCC
Q 010355 435 TEVEYESEMSTSEEIEEEEEEENAERPMILLDTDEDEDEEYGEDDEDEEYSEYDEDEEYGEDDEDEEDDGEDDDIQSY 512 (512)
Q Consensus 435 ~~~~~~~~~~~~~e~~e~~~~e~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 512 (512)
......+++.+..+..+.+|..+.+-.+++-++++||+++.++++||++++++|.|-+-+.--++|+++|.++.+.+.
T Consensus 1711 nttndtnaDnEEregq~~ef~GEed~~Dddnddddddd~EaEdddDddDdDdeD~d~~aea~aEdEe~eEgdeheQDe 1788 (3015)
T KOG0943|consen 1711 NTTNDTNADNEEREGQEGEFAGEEDHHDDDNDDDDDDDAEAEDDDDDDDDDDEDMDLDAEAAAEDEEDEEGDEHEQDE 1788 (3015)
T ss_pred CccCccccchhhhcCCcccccCcccccccccccccccchhhccccccccccccccccchhhhhccccccccccccccc
No 498
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=94.84 E-value=0.026 Score=50.15 Aligned_cols=24 Identities=25% Similarity=0.267 Sum_probs=0.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhh
Q 010355 171 HMIGAYGMAGVGKTMLVKEVARQA 194 (512)
Q Consensus 171 ~vi~I~G~gGiGKTtLa~~v~~~~ 194 (512)
..|.|+|++|+||||+++.++...
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~l 26 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQAL 26 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
No 499
>PRK13695 putative NTPase; Provisional
Probab=94.84 E-value=0.04 Score=49.11 Aligned_cols=34 Identities=35% Similarity=0.429 Sum_probs=0.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEE
Q 010355 173 IGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAE 207 (512)
Q Consensus 173 i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~ 207 (512)
|+|+|.+|+|||||++.+++.... ..+...-|+.
T Consensus 3 i~ltG~~G~GKTTll~~i~~~l~~-~G~~~~g~~~ 36 (174)
T PRK13695 3 IGITGPPGVGKTTLVLKIAELLKE-EGYKVGGFYT 36 (174)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH-CCCeEEEEEc
No 500
>PRK13236 nitrogenase reductase; Reviewed
Probab=94.82 E-value=0.048 Score=53.26 Aligned_cols=52 Identities=13% Similarity=0.372 Sum_probs=0.0
Q ss_pred hcCCCceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCCCHHHHH
Q 010355 165 LKNPDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQ 218 (512)
Q Consensus 165 L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ll 218 (512)
+.+.+.+++++.|-||+||||++..++.... ..-..+.-+.+....+...++
T Consensus 1 ~~~~~~~~~~~~GKGGVGKTt~a~NLA~~La--~~G~rVLliD~D~q~~~~~~l 52 (296)
T PRK13236 1 MTDENIRQIAFYGKGGIGKSTTSQNTLAAMA--EMGQRILIVGCDPKADSTRLM 52 (296)
T ss_pred CCCcCceEEEEECCCcCCHHHHHHHHHHHHH--HCCCcEEEEEccCCCCccchh
Done!