Query 010355
Match_columns 512
No_of_seqs 500 out of 3563
Neff 9.4
Searched_HMMs 29240
Date Mon Mar 25 05:00:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010355.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010355hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 1.6E-40 5.4E-45 351.3 20.8 285 152-467 131-447 (549)
2 3sfz_A APAF-1, apoptotic pepti 100.0 5.8E-33 2E-37 321.8 25.1 284 143-435 118-425 (1249)
3 1vt4_I APAF-1 related killer D 100.0 9.8E-34 3.4E-38 304.8 15.8 257 151-435 130-418 (1221)
4 1z6t_A APAF-1, apoptotic prote 100.0 8.3E-32 2.8E-36 288.2 23.6 279 145-435 120-425 (591)
5 2qen_A Walker-type ATPase; unk 99.6 2.4E-15 8.2E-20 149.4 16.2 198 144-351 7-250 (350)
6 2fna_A Conserved hypothetical 99.6 2.3E-14 7.9E-19 142.6 15.6 194 145-351 9-254 (357)
7 1w5s_A Origin recognition comp 99.6 6.7E-14 2.3E-18 142.3 18.7 237 149-400 22-315 (412)
8 2qby_B CDC6 homolog 3, cell di 99.5 4.8E-13 1.6E-17 134.7 20.5 232 149-400 20-291 (384)
9 2qby_A CDC6 homolog 1, cell di 99.5 5.7E-13 2E-17 134.0 17.2 239 148-400 19-293 (386)
10 2v1u_A Cell division control p 99.4 2.6E-12 9E-17 129.2 18.1 235 149-400 19-297 (387)
11 1njg_A DNA polymerase III subu 99.4 3.3E-12 1.1E-16 119.5 16.8 199 145-351 19-232 (250)
12 2chg_A Replication factor C sm 99.4 3E-12 1E-16 118.1 16.2 189 146-350 14-207 (226)
13 3qfl_A MLA10; coiled-coil, (CC 99.4 5.7E-13 1.9E-17 108.8 7.5 66 29-94 16-82 (115)
14 1fnn_A CDC6P, cell division co 99.3 1.1E-10 3.7E-15 117.5 19.3 199 149-348 17-248 (389)
15 1sxj_B Activator 1 37 kDa subu 99.2 7.9E-11 2.7E-15 115.3 13.1 190 145-349 17-212 (323)
16 1iqp_A RFCS; clamp loader, ext 99.1 3.2E-10 1.1E-14 111.1 10.9 189 145-351 21-216 (327)
17 1hqc_A RUVB; extended AAA-ATPa 99.0 5.3E-09 1.8E-13 102.4 17.2 176 146-351 9-215 (324)
18 3te6_A Regulatory protein SIR3 99.0 1E-08 3.5E-13 99.0 17.6 168 150-317 21-212 (318)
19 2chq_A Replication factor C sm 99.0 3.8E-09 1.3E-13 103.0 14.1 187 145-350 13-207 (319)
20 1jr3_A DNA polymerase III subu 98.9 2E-08 6.7E-13 100.3 15.1 195 147-349 14-223 (373)
21 1jbk_A CLPB protein; beta barr 98.9 1.8E-09 6.2E-14 96.7 6.0 153 147-312 20-194 (195)
22 3pvs_A Replication-associated 98.8 7.1E-08 2.4E-12 98.2 15.6 182 145-349 22-217 (447)
23 2qz4_A Paraplegin; AAA+, SPG7, 98.7 6.5E-07 2.2E-11 84.5 19.7 181 148-348 5-223 (262)
24 3bos_A Putative DNA replicatio 98.7 1.6E-08 5.4E-13 94.2 7.6 175 147-349 26-219 (242)
25 3h4m_A Proteasome-activating n 98.7 2.7E-07 9.4E-12 88.3 16.5 180 146-347 14-231 (285)
26 1sxj_A Activator 1 95 kDa subu 98.7 9E-08 3.1E-12 99.7 13.0 191 145-347 35-253 (516)
27 1sxj_D Activator 1 41 kDa subu 98.7 1.2E-07 4E-12 93.8 13.0 197 145-348 33-236 (353)
28 1xwi_A SKD1 protein; VPS4B, AA 98.6 3.5E-06 1.2E-10 82.1 21.2 183 146-348 9-224 (322)
29 3u61_B DNA polymerase accessor 98.6 2.9E-07 9.9E-12 90.0 13.5 184 145-350 22-219 (324)
30 1d2n_A N-ethylmaleimide-sensit 98.6 7.9E-07 2.7E-11 84.5 16.2 194 150-368 34-264 (272)
31 3pfi_A Holliday junction ATP-d 98.6 3.8E-07 1.3E-11 89.7 13.5 176 145-349 25-229 (338)
32 3b9p_A CG5977-PA, isoform A; A 98.6 2.5E-06 8.7E-11 82.1 18.7 182 146-348 18-234 (297)
33 3d8b_A Fidgetin-like protein 1 98.6 1.5E-06 5E-11 86.2 17.1 183 146-349 81-297 (357)
34 3pxg_A Negative regulator of g 98.6 3.3E-07 1.1E-11 94.2 12.1 151 147-317 178-339 (468)
35 3eie_A Vacuolar protein sortin 98.5 1.7E-06 5.9E-11 84.4 16.3 182 146-348 15-229 (322)
36 3uk6_A RUVB-like 2; hexameric 98.5 1.2E-06 4E-11 87.2 14.8 197 148-348 43-304 (368)
37 1sxj_E Activator 1 40 kDa subu 98.5 2.2E-07 7.6E-12 92.0 9.3 197 145-350 10-240 (354)
38 3vfd_A Spastin; ATPase, microt 98.5 3.8E-06 1.3E-10 84.2 18.4 183 145-348 111-327 (389)
39 2zan_A Vacuolar protein sortin 98.5 5.8E-06 2E-10 84.3 19.6 183 146-348 131-346 (444)
40 3cf0_A Transitional endoplasmi 98.5 3.5E-06 1.2E-10 81.3 17.1 174 147-342 13-223 (301)
41 2p65_A Hypothetical protein PF 98.5 9.9E-08 3.4E-12 84.8 5.6 49 147-195 20-68 (187)
42 2z4s_A Chromosomal replication 98.5 1.1E-06 3.8E-11 89.5 13.7 200 148-365 104-332 (440)
43 4b4t_J 26S protease regulatory 98.5 4E-06 1.4E-10 82.9 17.2 172 147-340 146-354 (405)
44 2qp9_X Vacuolar protein sortin 98.5 2.9E-06 1E-10 83.8 15.9 182 146-348 48-262 (355)
45 3syl_A Protein CBBX; photosynt 98.4 5.5E-07 1.9E-11 87.3 9.9 152 150-317 32-218 (309)
46 1sxj_C Activator 1 40 kDa subu 98.4 1.6E-06 5.5E-11 85.3 13.3 183 145-344 21-209 (340)
47 1a5t_A Delta prime, HOLB; zinc 98.4 5.5E-06 1.9E-10 81.2 16.8 162 155-346 8-204 (334)
48 4b4t_L 26S protease subunit RP 98.4 5.1E-06 1.7E-10 83.5 16.1 171 148-340 180-387 (437)
49 1l8q_A Chromosomal replication 98.4 1.7E-06 5.7E-11 84.5 12.0 165 158-343 23-204 (324)
50 1qvr_A CLPB protein; coiled co 98.4 1.1E-06 3.9E-11 97.1 11.6 158 146-316 167-345 (854)
51 4b4t_H 26S protease regulatory 98.4 9.1E-06 3.1E-10 81.5 16.9 170 148-339 208-414 (467)
52 4b4t_M 26S protease regulatory 98.4 3.5E-06 1.2E-10 84.6 13.8 171 147-339 179-386 (434)
53 1r6b_X CLPA protein; AAA+, N-t 98.3 8.5E-06 2.9E-10 89.1 16.6 158 146-316 183-362 (758)
54 4b4t_I 26S protease regulatory 98.3 1.2E-05 4.2E-10 79.8 15.9 171 147-339 180-387 (437)
55 3pxi_A Negative regulator of g 98.3 2.9E-06 1E-10 92.7 12.1 151 147-317 178-339 (758)
56 1lv7_A FTSH; alpha/beta domain 98.3 2.6E-05 8.8E-10 73.3 16.4 179 146-346 9-224 (257)
57 4b4t_K 26S protease regulatory 98.3 1.2E-05 4.2E-10 80.6 14.7 171 147-339 170-378 (428)
58 2gno_A DNA polymerase III, gam 98.1 2.6E-05 8.9E-10 75.1 13.4 143 153-316 1-152 (305)
59 3hu3_A Transitional endoplasmi 98.1 5.3E-05 1.8E-09 77.8 16.1 177 148-346 203-414 (489)
60 2w58_A DNAI, primosome compone 98.1 6.6E-06 2.3E-10 74.2 8.3 112 156-285 36-159 (202)
61 3ec2_A DNA replication protein 98.0 4E-06 1.4E-10 74.2 5.6 115 154-285 19-143 (180)
62 3n70_A Transport activator; si 98.0 2.8E-06 9.7E-11 72.4 4.4 46 150-195 2-49 (145)
63 2ce7_A Cell division protein F 98.0 0.00016 5.4E-09 73.7 17.2 197 148-366 15-257 (476)
64 1in4_A RUVB, holliday junction 98.0 0.0002 6.9E-09 69.9 16.6 192 146-366 22-251 (334)
65 4fcw_A Chaperone protein CLPB; 98.0 2.8E-05 9.7E-10 75.1 10.4 105 150-261 18-131 (311)
66 1ofh_A ATP-dependent HSL prote 97.9 2.7E-05 9.2E-10 75.1 9.5 46 150-195 16-75 (310)
67 2r62_A Cell division protease 97.9 1.2E-05 4.1E-10 76.1 5.4 150 148-317 10-197 (268)
68 3cf2_A TER ATPase, transitiona 97.8 7.4E-05 2.5E-09 80.7 11.8 171 148-340 203-407 (806)
69 2c9o_A RUVB-like 1; hexameric 97.8 0.0002 6.8E-09 73.2 13.4 48 148-195 36-88 (456)
70 1ixz_A ATP-dependent metallopr 97.8 0.00032 1.1E-08 65.5 13.7 147 172-340 51-221 (254)
71 1iy2_A ATP-dependent metallopr 97.7 0.00099 3.4E-08 63.1 15.6 173 146-340 37-245 (278)
72 2x8a_A Nuclear valosin-contain 97.7 0.0012 4.1E-08 62.4 16.0 124 172-317 46-192 (274)
73 1ojl_A Transcriptional regulat 97.7 0.00024 8.1E-09 68.4 11.0 46 150-195 3-50 (304)
74 3co5_A Putative two-component 97.6 1.6E-05 5.4E-10 67.5 2.2 45 150-194 5-51 (143)
75 3pxi_A Negative regulator of g 97.6 0.00014 4.9E-09 79.3 9.3 147 149-316 491-675 (758)
76 2dhr_A FTSH; AAA+ protein, hex 97.5 0.0014 4.8E-08 67.1 14.5 198 147-366 29-272 (499)
77 3io5_A Recombination and repai 97.5 0.0007 2.4E-08 64.5 11.1 85 171-260 29-122 (333)
78 2kjq_A DNAA-related protein; s 97.5 8.3E-05 2.8E-09 63.4 4.3 40 169-210 35-74 (149)
79 1r6b_X CLPA protein; AAA+, N-t 97.4 0.0004 1.4E-08 75.8 10.0 101 150-260 459-568 (758)
80 3m6a_A ATP-dependent protease 97.4 0.00072 2.5E-08 70.5 11.4 155 150-316 82-266 (543)
81 1n0w_A DNA repair protein RAD5 97.3 0.0013 4.4E-08 60.6 11.4 90 170-260 24-130 (243)
82 1ypw_A Transitional endoplasmi 97.3 0.00054 1.8E-08 74.9 9.6 150 148-317 203-386 (806)
83 2qgz_A Helicase loader, putati 97.3 0.0003 1E-08 67.8 6.3 53 154-208 133-189 (308)
84 2w0m_A SSO2452; RECA, SSPF, un 97.3 0.00065 2.2E-08 62.2 8.4 47 171-221 24-70 (235)
85 1qvr_A CLPB protein; coiled co 97.3 0.00041 1.4E-08 76.6 8.1 46 150-195 559-613 (854)
86 2cvh_A DNA repair and recombin 97.2 0.0018 6E-08 58.7 10.9 84 170-260 20-116 (220)
87 3hr8_A Protein RECA; alpha and 97.2 0.0012 4.1E-08 64.5 10.1 84 170-260 61-150 (356)
88 2vhj_A Ntpase P4, P4; non- hyd 97.2 0.00044 1.5E-08 66.1 6.6 68 171-260 124-193 (331)
89 1v5w_A DMC1, meiotic recombina 97.2 0.0017 5.8E-08 63.5 10.8 89 170-259 122-229 (343)
90 4a74_A DNA repair and recombin 97.2 0.00069 2.4E-08 62.0 7.5 90 170-260 25-136 (231)
91 2z43_A DNA repair and recombin 97.2 0.0019 6.6E-08 62.6 10.7 90 170-260 107-214 (324)
92 3cf2_A TER ATPase, transitiona 97.2 0.00059 2E-08 73.7 7.6 170 148-339 476-682 (806)
93 3t15_A Ribulose bisphosphate c 97.1 0.00054 1.9E-08 65.5 6.3 27 169-195 35-61 (293)
94 2i1q_A DNA repair and recombin 97.1 0.0023 7.7E-08 62.0 10.2 89 170-259 98-214 (322)
95 2zr9_A Protein RECA, recombina 97.0 0.0022 7.5E-08 62.8 9.6 83 170-259 61-149 (349)
96 1xp8_A RECA protein, recombina 97.0 0.0024 8.3E-08 62.8 9.9 83 170-259 74-162 (366)
97 2ehv_A Hypothetical protein PH 97.0 0.00054 1.8E-08 63.6 4.8 23 170-192 30-52 (251)
98 3lda_A DNA repair protein RAD5 97.0 0.002 7E-08 64.1 9.1 89 170-259 178-283 (400)
99 1u94_A RECA protein, recombina 96.9 0.0027 9.2E-08 62.2 9.3 83 170-259 63-151 (356)
100 2b8t_A Thymidine kinase; deoxy 96.8 0.00079 2.7E-08 61.3 4.1 111 169-286 11-127 (223)
101 2bjv_A PSP operon transcriptio 96.8 0.0014 4.9E-08 61.5 6.0 60 149-210 6-67 (265)
102 2px0_A Flagellar biosynthesis 96.8 0.0053 1.8E-07 58.6 10.0 87 169-258 104-191 (296)
103 1jr3_D DNA polymerase III, del 96.8 0.0084 2.9E-07 58.5 11.7 157 168-346 16-184 (343)
104 3bh0_A DNAB-like replicative h 96.7 0.011 3.8E-07 56.9 11.4 51 170-224 68-118 (315)
105 1rz3_A Hypothetical protein rb 96.5 0.0026 8.9E-08 57.0 5.5 43 153-195 2-47 (201)
106 3dm5_A SRP54, signal recogniti 96.5 0.015 5.2E-07 58.3 11.1 28 169-196 99-126 (443)
107 1pzn_A RAD51, DNA repair and r 96.5 0.0079 2.7E-07 58.9 8.9 92 169-261 130-243 (349)
108 3ice_A Transcription terminati 96.4 0.0053 1.8E-07 60.0 7.3 97 160-260 163-272 (422)
109 2dr3_A UPF0273 protein PH0284; 96.4 0.011 3.9E-07 54.3 9.5 48 170-221 23-70 (247)
110 1g8p_A Magnesium-chelatase 38 96.4 0.0015 5.1E-08 64.0 3.4 50 146-195 21-70 (350)
111 1qhx_A CPT, protein (chloramph 96.3 0.0021 7.3E-08 56.1 3.6 25 171-195 4-28 (178)
112 3kl4_A SRP54, signal recogniti 96.3 0.02 6.8E-07 57.4 11.0 28 169-196 96-123 (433)
113 3c8u_A Fructokinase; YP_612366 96.3 0.0039 1.3E-07 56.1 5.4 40 156-195 6-47 (208)
114 3kb2_A SPBC2 prophage-derived 96.3 0.0023 8E-08 55.4 3.7 25 171-195 2-26 (173)
115 1sky_E F1-ATPase, F1-ATP synth 96.3 0.0096 3.3E-07 60.0 8.3 88 171-259 152-255 (473)
116 3umf_A Adenylate kinase; rossm 96.2 0.01 3.4E-07 53.7 7.5 27 169-195 28-54 (217)
117 3tqc_A Pantothenate kinase; bi 96.2 0.02 6.8E-07 55.1 10.0 44 152-195 70-117 (321)
118 2xxa_A Signal recognition part 96.2 0.022 7.6E-07 57.3 10.7 58 169-227 99-157 (433)
119 1g5t_A COB(I)alamin adenosyltr 96.2 0.0028 9.7E-08 56.0 3.5 113 171-286 29-164 (196)
120 3lw7_A Adenylate kinase relate 96.2 0.0029 9.9E-08 54.8 3.6 20 171-190 2-21 (179)
121 2r44_A Uncharacterized protein 96.2 0.0027 9.3E-08 61.7 3.7 45 149-195 27-71 (331)
122 1fx0_B ATP synthase beta chain 96.2 0.017 6E-07 58.2 9.5 97 162-259 156-276 (498)
123 1ypw_A Transitional endoplasmi 96.1 0.001 3.5E-08 72.7 0.6 150 148-317 476-662 (806)
124 3vaa_A Shikimate kinase, SK; s 96.1 0.0035 1.2E-07 56.0 3.9 27 169-195 24-50 (199)
125 2yvu_A Probable adenylyl-sulfa 96.1 0.0042 1.4E-07 54.7 4.3 29 168-196 11-39 (186)
126 3nbx_X ATPase RAVA; AAA+ ATPas 96.1 0.0027 9.4E-08 65.1 3.4 44 150-195 23-66 (500)
127 1ly1_A Polynucleotide kinase; 96.1 0.0035 1.2E-07 54.7 3.7 22 171-192 3-24 (181)
128 3cmu_A Protein RECA, recombina 96.1 0.0094 3.2E-07 70.1 8.1 84 169-259 1426-1515(2050)
129 3trf_A Shikimate kinase, SK; a 96.1 0.0036 1.2E-07 55.0 3.7 26 170-195 5-30 (185)
130 1vma_A Cell division protein F 96.0 0.028 9.4E-07 53.8 9.8 87 169-259 103-196 (306)
131 1kag_A SKI, shikimate kinase I 96.0 0.0034 1.2E-07 54.5 3.2 25 171-195 5-29 (173)
132 3uie_A Adenylyl-sulfate kinase 96.0 0.0047 1.6E-07 55.1 4.2 28 168-195 23-50 (200)
133 1nks_A Adenylate kinase; therm 96.0 0.0041 1.4E-07 54.9 3.7 25 171-195 2-26 (194)
134 3hws_A ATP-dependent CLP prote 96.0 0.0067 2.3E-07 59.8 5.6 45 151-195 17-76 (363)
135 2rhm_A Putative kinase; P-loop 95.9 0.0049 1.7E-07 54.5 4.0 26 170-195 5-30 (193)
136 1kgd_A CASK, peripheral plasma 95.9 0.0042 1.4E-07 54.5 3.5 26 170-195 5-30 (180)
137 4eun_A Thermoresistant glucoki 95.9 0.0048 1.7E-07 55.1 3.9 27 168-194 27-53 (200)
138 1zp6_A Hypothetical protein AT 95.9 0.0045 1.5E-07 54.7 3.7 24 170-193 9-32 (191)
139 1j8m_F SRP54, signal recogniti 95.9 0.038 1.3E-06 52.6 10.3 87 170-258 98-189 (297)
140 2ck3_D ATP synthase subunit be 95.9 0.035 1.2E-06 55.8 10.2 98 161-259 143-263 (482)
141 2j37_W Signal recognition part 95.9 0.073 2.5E-06 54.4 12.9 38 169-208 100-137 (504)
142 1kht_A Adenylate kinase; phosp 95.9 0.0048 1.6E-07 54.4 3.7 25 171-195 4-28 (192)
143 4a1f_A DNAB helicase, replicat 95.9 0.026 8.8E-07 54.7 9.1 51 170-224 46-96 (338)
144 3iij_A Coilin-interacting nucl 95.9 0.0044 1.5E-07 54.2 3.4 26 170-195 11-36 (180)
145 1zuh_A Shikimate kinase; alpha 95.9 0.0052 1.8E-07 53.1 3.8 27 169-195 6-32 (168)
146 3t61_A Gluconokinase; PSI-biol 95.9 0.0041 1.4E-07 55.6 3.2 26 170-195 18-43 (202)
147 3fwy_A Light-independent proto 95.8 0.011 3.6E-07 56.9 6.1 41 168-210 46-86 (314)
148 2hf9_A Probable hydrogenase ni 95.8 0.0075 2.6E-07 54.8 4.8 37 159-195 27-63 (226)
149 1ex7_A Guanylate kinase; subst 95.8 0.0043 1.5E-07 54.7 2.9 25 171-195 2-26 (186)
150 2ze6_A Isopentenyl transferase 95.8 0.0058 2E-07 56.9 3.9 25 171-195 2-26 (253)
151 1via_A Shikimate kinase; struc 95.8 0.005 1.7E-07 53.6 3.2 25 171-195 5-29 (175)
152 2q6t_A DNAB replication FORK h 95.8 0.05 1.7E-06 55.0 11.1 52 170-224 200-251 (444)
153 1um8_A ATP-dependent CLP prote 95.8 0.0093 3.2E-07 59.0 5.5 26 170-195 72-97 (376)
154 2qor_A Guanylate kinase; phosp 95.7 0.0051 1.7E-07 55.2 3.2 26 170-195 12-37 (204)
155 2ga8_A Hypothetical 39.9 kDa p 95.7 0.011 3.9E-07 57.2 5.8 40 156-195 6-49 (359)
156 1knq_A Gluconate kinase; ALFA/ 95.7 0.0078 2.7E-07 52.3 4.3 25 170-194 8-32 (175)
157 3tau_A Guanylate kinase, GMP k 95.7 0.0062 2.1E-07 54.8 3.8 27 169-195 7-33 (208)
158 3jvv_A Twitching mobility prot 95.7 0.0033 1.1E-07 61.6 2.0 111 169-288 122-234 (356)
159 1y63_A LMAJ004144AAA protein; 95.7 0.0077 2.6E-07 53.0 4.2 25 169-193 9-33 (184)
160 1ukz_A Uridylate kinase; trans 95.7 0.0075 2.6E-07 53.8 4.2 27 169-195 14-40 (203)
161 1ls1_A Signal recognition part 95.7 0.035 1.2E-06 52.8 9.1 88 169-258 97-189 (295)
162 2jaq_A Deoxyguanosine kinase; 95.7 0.0064 2.2E-07 54.2 3.7 24 172-195 2-25 (205)
163 1tev_A UMP-CMP kinase; ploop, 95.7 0.007 2.4E-07 53.5 3.9 26 170-195 3-28 (196)
164 2c95_A Adenylate kinase 1; tra 95.7 0.0068 2.3E-07 53.7 3.8 26 170-195 9-34 (196)
165 1odf_A YGR205W, hypothetical 3 95.7 0.014 4.7E-07 55.5 6.1 54 168-221 29-83 (290)
166 1gvn_B Zeta; postsegregational 95.7 0.01 3.5E-07 56.3 5.2 26 169-194 32-57 (287)
167 2iyv_A Shikimate kinase, SK; t 95.7 0.0053 1.8E-07 53.9 3.0 25 171-195 3-27 (184)
168 2wsm_A Hydrogenase expression/ 95.7 0.0072 2.5E-07 54.7 4.0 40 156-195 16-55 (221)
169 2plr_A DTMP kinase, probable t 95.6 0.0079 2.7E-07 54.0 4.1 26 171-196 5-30 (213)
170 2z0h_A DTMP kinase, thymidylat 95.6 0.019 6.5E-07 50.7 6.5 24 172-195 2-25 (197)
171 3cm0_A Adenylate kinase; ATP-b 95.6 0.0085 2.9E-07 52.6 4.1 26 170-195 4-29 (186)
172 4akg_A Glutathione S-transfera 95.6 0.038 1.3E-06 67.2 10.8 136 171-316 1268-1431(2695)
173 1xjc_A MOBB protein homolog; s 95.6 0.012 4.1E-07 50.9 4.8 28 169-196 3-30 (169)
174 2zts_A Putative uncharacterize 95.6 0.029 1E-06 51.5 8.0 49 170-221 30-78 (251)
175 3tr0_A Guanylate kinase, GMP k 95.6 0.008 2.7E-07 53.6 3.9 25 170-194 7-31 (205)
176 2bwj_A Adenylate kinase 5; pho 95.6 0.0074 2.5E-07 53.5 3.6 25 171-195 13-37 (199)
177 3a00_A Guanylate kinase, GMP k 95.6 0.0064 2.2E-07 53.6 3.1 25 171-195 2-26 (186)
178 1e6c_A Shikimate kinase; phosp 95.6 0.0066 2.3E-07 52.5 3.2 25 171-195 3-27 (173)
179 3tlx_A Adenylate kinase 2; str 95.5 0.015 5.2E-07 53.6 5.8 28 168-195 27-54 (243)
180 2bdt_A BH3686; alpha-beta prot 95.5 0.0081 2.8E-07 53.0 3.7 22 171-192 3-24 (189)
181 1tue_A Replication protein E1; 95.5 0.011 3.9E-07 52.4 4.5 38 158-195 45-83 (212)
182 3a4m_A L-seryl-tRNA(SEC) kinas 95.5 0.0086 3E-07 55.9 4.0 26 170-195 4-29 (260)
183 2vli_A Antibiotic resistance p 95.5 0.0055 1.9E-07 53.6 2.5 26 170-195 5-30 (183)
184 1uj2_A Uridine-cytidine kinase 95.5 0.0093 3.2E-07 55.4 4.2 28 168-195 20-47 (252)
185 2j41_A Guanylate kinase; GMP, 95.5 0.009 3.1E-07 53.4 3.9 25 170-194 6-30 (207)
186 2cdn_A Adenylate kinase; phosp 95.5 0.0098 3.4E-07 53.0 4.2 26 170-195 20-45 (201)
187 1uf9_A TT1252 protein; P-loop, 95.5 0.0089 3.1E-07 53.2 3.9 26 168-193 6-31 (203)
188 3asz_A Uridine kinase; cytidin 95.5 0.0094 3.2E-07 53.6 4.0 27 169-195 5-31 (211)
189 2ffh_A Protein (FFH); SRP54, s 95.5 0.054 1.9E-06 54.1 9.8 57 169-228 97-155 (425)
190 1qf9_A UMP/CMP kinase, protein 95.5 0.009 3.1E-07 52.6 3.8 26 170-195 6-31 (194)
191 3ney_A 55 kDa erythrocyte memb 95.5 0.0094 3.2E-07 53.0 3.8 27 169-195 18-44 (197)
192 1cke_A CK, MSSA, protein (cyti 95.4 0.0088 3E-07 54.4 3.7 25 171-195 6-30 (227)
193 1ye8_A Protein THEP1, hypothet 95.4 0.0098 3.4E-07 52.1 3.8 24 172-195 2-25 (178)
194 2pt5_A Shikimate kinase, SK; a 95.4 0.0099 3.4E-07 51.1 3.8 24 172-195 2-25 (168)
195 1aky_A Adenylate kinase; ATP:A 95.4 0.01 3.4E-07 53.9 3.9 26 170-195 4-29 (220)
196 3aez_A Pantothenate kinase; tr 95.4 0.038 1.3E-06 53.0 8.1 29 168-196 88-116 (312)
197 2bbw_A Adenylate kinase 4, AK4 95.4 0.01 3.5E-07 54.9 3.9 27 169-195 26-52 (246)
198 2wwf_A Thymidilate kinase, put 95.3 0.01 3.5E-07 53.3 3.8 27 170-196 10-36 (212)
199 1lvg_A Guanylate kinase, GMP k 95.3 0.0085 2.9E-07 53.4 3.1 25 171-195 5-29 (198)
200 2pbr_A DTMP kinase, thymidylat 95.3 0.011 3.6E-07 52.3 3.7 24 172-195 2-25 (195)
201 1nn5_A Similar to deoxythymidy 95.3 0.011 3.8E-07 53.1 3.9 27 170-196 9-35 (215)
202 2r6a_A DNAB helicase, replicat 95.3 0.037 1.3E-06 56.2 8.2 50 170-222 203-252 (454)
203 3l0o_A Transcription terminati 95.3 0.011 3.9E-07 57.6 4.1 52 159-211 163-216 (427)
204 2if2_A Dephospho-COA kinase; a 95.3 0.0095 3.3E-07 53.2 3.3 22 171-192 2-23 (204)
205 1q57_A DNA primase/helicase; d 95.3 0.049 1.7E-06 56.1 9.2 56 170-228 242-298 (503)
206 3end_A Light-independent proto 95.3 0.022 7.6E-07 54.5 6.1 43 167-211 38-80 (307)
207 3cmw_A Protein RECA, recombina 95.2 0.036 1.2E-06 64.5 8.6 84 170-260 732-821 (1706)
208 1zd8_A GTP:AMP phosphotransfer 95.2 0.01 3.5E-07 54.1 3.5 26 170-195 7-32 (227)
209 2p5t_B PEZT; postsegregational 95.2 0.015 5.1E-07 54.1 4.6 27 169-195 31-57 (253)
210 1zak_A Adenylate kinase; ATP:A 95.2 0.01 3.4E-07 53.9 3.3 26 170-195 5-30 (222)
211 2qt1_A Nicotinamide riboside k 95.2 0.012 4.1E-07 52.7 3.7 25 170-194 21-45 (207)
212 3cmu_A Protein RECA, recombina 95.2 0.043 1.5E-06 64.7 9.1 83 170-259 383-471 (2050)
213 4gp7_A Metallophosphoesterase; 95.2 0.0098 3.4E-07 51.6 3.0 21 170-190 9-29 (171)
214 3fb4_A Adenylate kinase; psych 95.2 0.012 4.1E-07 53.1 3.7 24 172-195 2-25 (216)
215 2f1r_A Molybdopterin-guanine d 95.2 0.01 3.5E-07 51.5 3.0 36 171-206 3-38 (171)
216 3e70_C DPA, signal recognition 95.1 0.057 2E-06 52.1 8.6 58 168-227 127-185 (328)
217 1jjv_A Dephospho-COA kinase; P 95.1 0.012 4.1E-07 52.6 3.5 22 171-192 3-24 (206)
218 1gtv_A TMK, thymidylate kinase 95.1 0.0069 2.4E-07 54.5 1.9 24 172-195 2-25 (214)
219 3upu_A ATP-dependent DNA helic 95.1 0.034 1.2E-06 56.6 7.2 43 154-197 30-72 (459)
220 2v54_A DTMP kinase, thymidylat 95.1 0.013 4.5E-07 52.1 3.7 25 170-194 4-28 (204)
221 3cmw_A Protein RECA, recombina 95.1 0.043 1.5E-06 63.8 8.6 83 170-259 1431-1519(1706)
222 3dl0_A Adenylate kinase; phosp 95.1 0.013 4.6E-07 52.8 3.6 24 172-195 2-25 (216)
223 4e22_A Cytidylate kinase; P-lo 95.1 0.015 5.2E-07 54.0 4.1 27 169-195 26-52 (252)
224 1np6_A Molybdopterin-guanine d 95.0 0.024 8.3E-07 49.3 5.1 26 170-195 6-31 (174)
225 2grj_A Dephospho-COA kinase; T 95.0 0.016 5.5E-07 51.3 4.0 26 169-194 11-36 (192)
226 3k1j_A LON protease, ATP-depen 95.0 0.014 4.7E-07 61.7 4.1 48 146-195 38-85 (604)
227 1znw_A Guanylate kinase, GMP k 95.0 0.013 4.4E-07 52.6 3.4 26 170-195 20-45 (207)
228 1m7g_A Adenylylsulfate kinase; 95.0 0.017 5.9E-07 51.9 4.2 28 168-195 23-50 (211)
229 3bgw_A DNAB-like replicative h 95.0 0.078 2.7E-06 53.5 9.4 50 170-223 197-246 (444)
230 1rj9_A FTSY, signal recognitio 95.0 0.017 5.7E-07 55.3 4.1 28 169-196 101-128 (304)
231 2yhs_A FTSY, cell division pro 94.9 0.16 5.5E-06 51.5 11.3 42 169-213 292-333 (503)
232 2pez_A Bifunctional 3'-phospho 94.9 0.019 6.5E-07 50.0 4.1 26 170-195 5-30 (179)
233 1z6g_A Guanylate kinase; struc 94.9 0.013 4.3E-07 53.2 3.0 25 170-194 23-47 (218)
234 2jeo_A Uridine-cytidine kinase 94.9 0.019 6.6E-07 53.0 4.2 26 169-194 24-49 (245)
235 1g41_A Heat shock protein HSLU 94.9 0.016 5.5E-07 58.1 3.9 46 150-195 16-75 (444)
236 3lv8_A DTMP kinase, thymidylat 94.9 0.048 1.7E-06 49.9 6.8 52 170-222 27-78 (236)
237 1htw_A HI0065; nucleotide-bind 94.9 0.018 6.2E-07 49.2 3.7 27 168-194 31-57 (158)
238 1s96_A Guanylate kinase, GMP k 94.8 0.018 6E-07 52.3 3.8 26 170-195 16-41 (219)
239 4tmk_A Protein (thymidylate ki 94.8 0.052 1.8E-06 48.8 6.7 52 171-223 4-55 (213)
240 3be4_A Adenylate kinase; malar 94.8 0.014 4.9E-07 52.7 3.0 25 171-195 6-30 (217)
241 1cr0_A DNA primase/helicase; R 94.8 0.054 1.8E-06 51.4 7.2 52 170-224 35-86 (296)
242 3iqw_A Tail-anchored protein t 94.8 0.042 1.4E-06 53.2 6.5 49 165-215 11-59 (334)
243 3sr0_A Adenylate kinase; phosp 94.7 0.019 6.5E-07 51.5 3.7 24 172-195 2-25 (206)
244 3p32_A Probable GTPase RV1496/ 94.7 0.069 2.4E-06 52.2 8.0 38 158-195 65-104 (355)
245 4eaq_A DTMP kinase, thymidylat 94.7 0.04 1.4E-06 50.3 5.9 28 169-196 25-52 (229)
246 1ak2_A Adenylate kinase isoenz 94.7 0.022 7.5E-07 52.1 4.1 26 170-195 16-41 (233)
247 4edh_A DTMP kinase, thymidylat 94.7 0.063 2.1E-06 48.3 7.1 52 170-223 6-57 (213)
248 1vht_A Dephospho-COA kinase; s 94.7 0.022 7.5E-07 51.4 4.0 23 170-192 4-26 (218)
249 3ake_A Cytidylate kinase; CMP 94.7 0.02 7E-07 51.0 3.8 25 171-195 3-27 (208)
250 3d3q_A TRNA delta(2)-isopenten 94.7 0.021 7E-07 55.2 3.9 25 171-195 8-32 (340)
251 2xb4_A Adenylate kinase; ATP-b 94.7 0.02 6.9E-07 52.0 3.7 24 172-195 2-25 (223)
252 3r20_A Cytidylate kinase; stru 94.6 0.021 7.2E-07 52.2 3.8 26 170-195 9-34 (233)
253 2i3b_A HCR-ntpase, human cance 94.6 0.018 6.1E-07 50.9 3.2 25 171-195 2-26 (189)
254 3ld9_A DTMP kinase, thymidylat 94.6 0.052 1.8E-06 49.2 6.3 57 167-223 18-74 (223)
255 3nwj_A ATSK2; P loop, shikimat 94.6 0.017 6E-07 53.4 3.2 26 170-195 48-73 (250)
256 3io3_A DEHA2D07832P; chaperone 94.6 0.048 1.6E-06 53.1 6.5 48 165-214 13-62 (348)
257 1e4v_A Adenylate kinase; trans 94.6 0.02 6.8E-07 51.6 3.5 24 172-195 2-25 (214)
258 2f6r_A COA synthase, bifunctio 94.6 0.021 7.1E-07 54.0 3.8 24 169-192 74-97 (281)
259 3crm_A TRNA delta(2)-isopenten 94.5 0.022 7.5E-07 54.6 3.8 25 171-195 6-30 (323)
260 3exa_A TRNA delta(2)-isopenten 94.5 0.023 8E-07 54.0 3.9 26 170-195 3-28 (322)
261 2c61_A A-type ATP synthase non 94.5 0.034 1.2E-06 55.8 5.2 89 171-259 153-259 (469)
262 3vr4_D V-type sodium ATPase su 94.5 0.075 2.6E-06 53.1 7.6 89 171-259 152-258 (465)
263 3b9q_A Chloroplast SRP recepto 94.5 0.026 8.9E-07 53.9 4.1 28 169-196 99-126 (302)
264 3lnc_A Guanylate kinase, GMP k 94.4 0.015 5.1E-07 53.1 2.1 25 170-194 27-52 (231)
265 3a8t_A Adenylate isopentenyltr 94.3 0.022 7.6E-07 54.8 3.3 26 170-195 40-65 (339)
266 3foz_A TRNA delta(2)-isopenten 94.3 0.031 1.1E-06 53.0 4.3 27 169-195 9-35 (316)
267 2r8r_A Sensor protein; KDPD, P 94.3 0.067 2.3E-06 48.3 6.2 39 171-211 7-45 (228)
268 1yrb_A ATP(GTP)binding protein 94.3 0.04 1.4E-06 51.1 5.0 27 169-195 13-39 (262)
269 3vr4_A V-type sodium ATPase ca 94.3 0.16 5.5E-06 52.0 9.6 95 161-259 222-339 (600)
270 1zu4_A FTSY; GTPase, signal re 94.3 0.045 1.5E-06 52.6 5.4 39 169-209 104-142 (320)
271 3mfy_A V-type ATP synthase alp 94.3 0.11 3.6E-06 53.1 8.2 95 161-259 217-334 (588)
272 1cp2_A CP2, nitrogenase iron p 94.2 0.055 1.9E-06 50.5 5.9 38 171-210 2-39 (269)
273 1sq5_A Pantothenate kinase; P- 94.2 0.03 1E-06 53.6 4.1 28 168-195 78-105 (308)
274 1u0j_A DNA replication protein 94.2 0.051 1.7E-06 50.5 5.4 37 158-194 90-128 (267)
275 2onk_A Molybdate/tungstate ABC 94.2 0.027 9.3E-07 51.8 3.5 24 171-194 25-48 (240)
276 2afh_E Nitrogenase iron protei 94.2 0.052 1.8E-06 51.4 5.6 40 170-211 2-41 (289)
277 1ltq_A Polynucleotide kinase; 94.2 0.028 9.7E-07 53.5 3.7 23 171-193 3-25 (301)
278 1a7j_A Phosphoribulokinase; tr 94.2 0.016 5.4E-07 55.1 1.9 27 169-195 4-30 (290)
279 3tif_A Uncharacterized ABC tra 94.1 0.023 7.9E-07 52.1 2.9 25 170-194 31-55 (235)
280 4gzl_A RAS-related C3 botulinu 94.1 0.03 1E-06 49.9 3.6 36 159-194 19-54 (204)
281 3hjn_A DTMP kinase, thymidylat 94.1 0.084 2.9E-06 46.8 6.4 50 172-223 2-51 (197)
282 3zvl_A Bifunctional polynucleo 94.0 0.026 8.8E-07 56.6 3.2 28 167-194 255-282 (416)
283 2og2_A Putative signal recogni 94.0 0.036 1.2E-06 54.2 4.1 28 169-196 156-183 (359)
284 2dyk_A GTP-binding protein; GT 94.0 0.036 1.2E-06 46.8 3.7 24 171-194 2-25 (161)
285 2pcj_A ABC transporter, lipopr 94.0 0.024 8.3E-07 51.5 2.7 25 170-194 30-54 (224)
286 1g8f_A Sulfate adenylyltransfe 93.9 0.053 1.8E-06 55.5 5.3 45 151-195 374-420 (511)
287 3gqb_B V-type ATP synthase bet 93.9 0.097 3.3E-06 52.3 7.0 89 171-259 148-261 (464)
288 1oix_A RAS-related protein RAB 93.9 0.033 1.1E-06 49.0 3.3 25 170-194 29-53 (191)
289 2qmh_A HPR kinase/phosphorylas 93.9 0.027 9.2E-07 49.7 2.6 25 170-194 34-58 (205)
290 3b85_A Phosphate starvation-in 93.9 0.023 8E-07 51.0 2.3 23 171-193 23-45 (208)
291 2eyu_A Twitching motility prot 93.9 0.038 1.3E-06 51.5 3.9 109 169-287 24-135 (261)
292 2wji_A Ferrous iron transport 93.8 0.04 1.4E-06 47.1 3.7 23 171-193 4-26 (165)
293 2cbz_A Multidrug resistance-as 93.8 0.029 9.8E-07 51.5 2.9 26 170-195 31-56 (237)
294 3kjh_A CO dehydrogenase/acetyl 93.8 0.073 2.5E-06 48.9 5.7 40 173-214 3-42 (254)
295 2ged_A SR-beta, signal recogni 93.8 0.049 1.7E-06 47.7 4.3 26 169-194 47-72 (193)
296 2f9l_A RAB11B, member RAS onco 93.8 0.036 1.2E-06 49.1 3.3 23 171-193 6-28 (199)
297 2d2e_A SUFC protein; ABC-ATPas 93.7 0.036 1.2E-06 51.3 3.4 24 170-193 29-52 (250)
298 3gfo_A Cobalt import ATP-bindi 93.7 0.03 1E-06 52.7 2.8 25 170-194 34-58 (275)
299 1b0u_A Histidine permease; ABC 93.7 0.03 1E-06 52.3 2.8 26 169-194 31-56 (262)
300 1nlf_A Regulatory protein REPA 93.7 0.033 1.1E-06 52.5 3.1 42 170-211 30-79 (279)
301 2orw_A Thymidine kinase; TMTK, 93.7 0.046 1.6E-06 48.0 3.9 26 171-196 4-29 (184)
302 1tf7_A KAIC; homohexamer, hexa 93.7 0.12 4E-06 53.5 7.6 37 170-208 281-317 (525)
303 2ocp_A DGK, deoxyguanosine kin 93.7 0.042 1.4E-06 50.5 3.8 26 170-195 2-27 (241)
304 2zej_A Dardarin, leucine-rich 93.7 0.03 1E-06 48.9 2.6 22 172-193 4-25 (184)
305 3v9p_A DTMP kinase, thymidylat 93.7 0.066 2.2E-06 48.7 4.9 27 170-196 25-51 (227)
306 1q3t_A Cytidylate kinase; nucl 93.7 0.047 1.6E-06 49.9 4.0 27 169-195 15-41 (236)
307 4dzz_A Plasmid partitioning pr 93.6 0.078 2.7E-06 47.0 5.4 43 171-215 2-45 (206)
308 1ji0_A ABC transporter; ATP bi 93.6 0.032 1.1E-06 51.3 2.9 25 170-194 32-56 (240)
309 2zu0_C Probable ATP-dependent 93.6 0.038 1.3E-06 51.7 3.4 24 170-193 46-69 (267)
310 2v9p_A Replication protein E1; 93.6 0.044 1.5E-06 52.2 3.8 27 168-194 124-150 (305)
311 4g1u_C Hemin import ATP-bindin 93.6 0.033 1.1E-06 52.1 2.8 25 170-194 37-61 (266)
312 1g6h_A High-affinity branched- 93.6 0.033 1.1E-06 51.8 2.9 25 170-194 33-57 (257)
313 1mv5_A LMRA, multidrug resista 93.6 0.035 1.2E-06 51.1 3.0 26 169-194 27-52 (243)
314 2pze_A Cystic fibrosis transme 93.6 0.034 1.2E-06 50.8 2.8 26 170-195 34-59 (229)
315 2olj_A Amino acid ABC transpor 93.5 0.034 1.2E-06 51.9 2.8 26 169-194 49-74 (263)
316 2ff7_A Alpha-hemolysin translo 93.5 0.035 1.2E-06 51.3 2.9 25 170-194 35-59 (247)
317 1sgw_A Putative ABC transporte 93.5 0.029 9.9E-07 50.6 2.3 24 171-194 36-59 (214)
318 1svm_A Large T antigen; AAA+ f 93.5 0.079 2.7E-06 52.1 5.5 27 168-194 167-193 (377)
319 2ce2_X GTPase HRAS; signaling 93.5 0.042 1.4E-06 46.4 3.1 23 172-194 5-27 (166)
320 1z2a_A RAS-related protein RAB 93.4 0.044 1.5E-06 46.5 3.3 24 171-194 6-29 (168)
321 3eph_A TRNA isopentenyltransfe 93.4 0.046 1.6E-06 53.9 3.7 25 171-195 3-27 (409)
322 4b3f_X DNA-binding protein smu 93.4 0.12 4E-06 55.1 7.1 63 156-223 193-255 (646)
323 1vpl_A ABC transporter, ATP-bi 93.4 0.037 1.3E-06 51.4 2.8 25 170-194 41-65 (256)
324 1zj6_A ADP-ribosylation factor 93.4 0.072 2.5E-06 46.4 4.7 34 159-193 6-39 (187)
325 2ghi_A Transport protein; mult 93.4 0.038 1.3E-06 51.5 2.9 25 170-194 46-70 (260)
326 2ixe_A Antigen peptide transpo 93.3 0.038 1.3E-06 51.8 2.9 26 169-194 44-69 (271)
327 2woo_A ATPase GET3; tail-ancho 93.3 0.13 4.3E-06 49.8 6.6 44 167-212 16-59 (329)
328 2wjg_A FEOB, ferrous iron tran 93.3 0.054 1.9E-06 47.2 3.7 24 170-193 7-30 (188)
329 3f9v_A Minichromosome maintena 93.3 0.022 7.5E-07 59.9 1.2 23 172-194 329-351 (595)
330 2qi9_C Vitamin B12 import ATP- 93.3 0.04 1.4E-06 51.0 2.8 25 170-194 26-50 (249)
331 1moz_A ARL1, ADP-ribosylation 93.2 0.049 1.7E-06 47.2 3.2 33 160-192 7-40 (183)
332 1nrj_B SR-beta, signal recogni 93.2 0.06 2E-06 48.3 3.9 26 169-194 11-36 (218)
333 2yz2_A Putative ABC transporte 93.2 0.042 1.4E-06 51.4 2.9 25 170-194 33-57 (266)
334 2nq2_C Hypothetical ABC transp 93.2 0.042 1.4E-06 51.0 2.8 25 170-194 31-55 (253)
335 1fzq_A ADP-ribosylation factor 93.2 0.07 2.4E-06 46.3 4.2 26 168-193 14-39 (181)
336 2ihy_A ABC transporter, ATP-bi 93.2 0.042 1.4E-06 51.8 2.8 25 170-194 47-71 (279)
337 3con_A GTPase NRAS; structural 93.1 0.052 1.8E-06 47.4 3.3 24 171-194 22-45 (190)
338 3oaa_A ATP synthase subunit al 93.1 0.41 1.4E-05 48.3 10.0 87 170-259 162-264 (513)
339 1u8z_A RAS-related protein RAL 93.1 0.054 1.8E-06 45.9 3.3 24 171-194 5-28 (168)
340 2nzj_A GTP-binding protein REM 93.1 0.05 1.7E-06 46.6 3.1 24 170-193 4-27 (175)
341 2www_A Methylmalonic aciduria 93.1 0.1 3.5E-06 50.9 5.6 27 169-195 73-99 (349)
342 3sop_A Neuronal-specific septi 93.1 0.054 1.9E-06 50.7 3.5 24 172-195 4-27 (270)
343 3cwq_A Para family chromosome 93.1 0.15 5.1E-06 45.6 6.3 43 172-217 2-45 (209)
344 1kao_A RAP2A; GTP-binding prot 93.1 0.055 1.9E-06 45.8 3.3 24 171-194 4-27 (167)
345 1r8s_A ADP-ribosylation factor 93.0 0.059 2E-06 45.6 3.4 22 173-194 3-24 (164)
346 1c1y_A RAS-related protein RAP 93.0 0.056 1.9E-06 45.8 3.3 22 172-193 5-26 (167)
347 1z08_A RAS-related protein RAB 93.0 0.056 1.9E-06 46.0 3.3 24 171-194 7-30 (170)
348 2lkc_A Translation initiation 93.0 0.069 2.4E-06 45.9 3.9 25 169-193 7-31 (178)
349 2v3c_C SRP54, signal recogniti 93.0 0.039 1.3E-06 55.5 2.4 27 170-196 99-125 (432)
350 1nij_A Hypothetical protein YJ 93.0 0.046 1.6E-06 52.6 2.9 26 169-194 3-28 (318)
351 1ek0_A Protein (GTP-binding pr 93.0 0.058 2E-06 45.8 3.3 23 172-194 5-27 (170)
352 3cr8_A Sulfate adenylyltranfer 92.9 0.083 2.8E-06 54.7 4.9 27 169-195 368-394 (552)
353 3ihw_A Centg3; RAS, centaurin, 92.9 0.058 2E-06 47.1 3.3 25 170-194 20-44 (184)
354 3zq6_A Putative arsenical pump 92.9 0.14 4.9E-06 49.2 6.3 45 170-216 14-58 (324)
355 3q85_A GTP-binding protein REM 92.9 0.057 2E-06 46.0 3.1 22 171-192 3-24 (169)
356 2woj_A ATPase GET3; tail-ancho 92.9 0.17 5.9E-06 49.3 6.9 48 167-216 15-64 (354)
357 1z0j_A RAB-22, RAS-related pro 92.9 0.061 2.1E-06 45.8 3.3 24 171-194 7-30 (170)
358 3kta_A Chromosome segregation 92.9 0.061 2.1E-06 46.8 3.3 24 171-194 27-50 (182)
359 1m7b_A RND3/RHOE small GTP-bin 92.8 0.057 2E-06 47.0 3.1 25 170-194 7-31 (184)
360 1ky3_A GTP-binding protein YPT 92.8 0.062 2.1E-06 46.3 3.3 26 169-194 7-32 (182)
361 3fkq_A NTRC-like two-domain pr 92.8 0.11 3.9E-06 51.1 5.5 44 168-213 141-185 (373)
362 1wms_A RAB-9, RAB9, RAS-relate 92.8 0.063 2.1E-06 46.1 3.3 25 170-194 7-31 (177)
363 2axn_A 6-phosphofructo-2-kinas 92.8 0.073 2.5E-06 54.9 4.2 27 169-195 34-60 (520)
364 2gj8_A MNME, tRNA modification 92.8 0.057 2E-06 46.5 3.0 23 171-193 5-27 (172)
365 2qe7_A ATP synthase subunit al 92.7 0.15 5E-06 51.6 6.2 95 161-259 152-264 (502)
366 3ug7_A Arsenical pump-driving 92.7 0.15 5.1E-06 49.7 6.2 41 168-210 24-64 (349)
367 2vp4_A Deoxynucleoside kinase; 92.7 0.047 1.6E-06 49.8 2.4 25 169-193 19-43 (230)
368 2erx_A GTP-binding protein DI- 92.7 0.061 2.1E-06 45.8 3.1 23 171-193 4-26 (172)
369 1r2q_A RAS-related protein RAB 92.7 0.067 2.3E-06 45.4 3.3 23 171-193 7-29 (170)
370 2pjz_A Hypothetical protein ST 92.7 0.054 1.8E-06 50.5 2.8 25 170-194 30-54 (263)
371 2fz4_A DNA repair protein RAD2 92.7 0.32 1.1E-05 44.4 8.1 39 153-194 94-132 (237)
372 3fvq_A Fe(3+) IONS import ATP- 92.7 0.059 2E-06 52.5 3.2 25 170-194 30-54 (359)
373 1f6b_A SAR1; gtpases, N-termin 92.7 0.091 3.1E-06 46.4 4.3 32 161-192 15-47 (198)
374 1g16_A RAS-related protein SEC 92.7 0.063 2.2E-06 45.7 3.1 23 171-193 4-26 (170)
375 3q72_A GTP-binding protein RAD 92.7 0.056 1.9E-06 45.9 2.8 21 172-192 4-24 (166)
376 3tqf_A HPR(Ser) kinase; transf 92.7 0.076 2.6E-06 45.7 3.5 24 170-193 16-39 (181)
377 3c5c_A RAS-like protein 12; GD 92.7 0.066 2.3E-06 46.8 3.3 25 170-194 21-45 (187)
378 3fdi_A Uncharacterized protein 92.6 0.074 2.5E-06 47.4 3.6 25 171-195 7-31 (201)
379 3gqb_A V-type ATP synthase alp 92.6 0.15 5E-06 52.1 6.0 95 161-259 211-328 (578)
380 4hlc_A DTMP kinase, thymidylat 92.6 0.24 8.2E-06 44.1 6.9 49 171-222 3-51 (205)
381 2r9v_A ATP synthase subunit al 92.6 0.15 5.2E-06 51.5 6.1 85 171-259 176-277 (515)
382 2ewv_A Twitching motility prot 92.6 0.089 3.1E-06 51.8 4.4 108 168-286 134-245 (372)
383 1svi_A GTP-binding protein YSX 92.6 0.075 2.6E-06 46.6 3.5 25 169-193 22-46 (195)
384 2h92_A Cytidylate kinase; ross 92.6 0.063 2.2E-06 48.3 3.1 25 171-195 4-28 (219)
385 2iwr_A Centaurin gamma 1; ANK 92.6 0.055 1.9E-06 46.6 2.6 23 171-193 8-30 (178)
386 1p5z_B DCK, deoxycytidine kina 92.6 0.037 1.3E-06 51.6 1.6 26 169-194 23-48 (263)
387 1upt_A ARL1, ADP-ribosylation 92.6 0.071 2.4E-06 45.4 3.3 24 170-193 7-30 (171)
388 2cjw_A GTP-binding protein GEM 92.6 0.07 2.4E-06 46.9 3.3 22 171-192 7-28 (192)
389 1z0f_A RAB14, member RAS oncog 92.5 0.071 2.4E-06 45.8 3.3 25 170-194 15-39 (179)
390 2fn4_A P23, RAS-related protei 92.5 0.087 3E-06 45.3 3.9 25 169-193 8-32 (181)
391 2ck3_A ATP synthase subunit al 92.5 0.18 6.3E-06 51.0 6.6 99 161-259 152-272 (510)
392 2yv5_A YJEQ protein; hydrolase 92.5 0.11 3.7E-06 49.5 4.8 34 158-195 156-189 (302)
393 3nh6_A ATP-binding cassette SU 92.5 0.046 1.6E-06 52.2 2.1 26 169-194 79-104 (306)
394 2hxs_A RAB-26, RAS-related pro 92.5 0.065 2.2E-06 46.1 3.0 24 170-193 6-29 (178)
395 1m2o_B GTP-binding protein SAR 92.5 0.069 2.3E-06 46.9 3.1 24 170-193 23-46 (190)
396 3gmt_A Adenylate kinase; ssgci 92.5 0.079 2.7E-06 48.1 3.5 25 171-195 9-33 (230)
397 1z47_A CYSA, putative ABC-tran 92.5 0.07 2.4E-06 52.0 3.4 25 170-194 41-65 (355)
398 1fx0_A ATP synthase alpha chai 92.4 0.11 3.6E-06 52.7 4.7 86 170-259 163-265 (507)
399 1m8p_A Sulfate adenylyltransfe 92.4 0.12 4.2E-06 53.8 5.4 27 169-195 395-421 (573)
400 3bc1_A RAS-related protein RAB 92.4 0.074 2.5E-06 46.3 3.3 25 170-194 11-35 (195)
401 1p9r_A General secretion pathw 92.4 0.14 4.6E-06 51.2 5.5 28 168-195 165-192 (418)
402 3kkq_A RAS-related protein M-R 92.4 0.076 2.6E-06 46.0 3.3 25 170-194 18-42 (183)
403 3tmk_A Thymidylate kinase; pho 92.4 0.18 6.3E-06 45.3 5.9 26 170-195 5-30 (216)
404 1ihu_A Arsenical pump-driving 92.4 0.16 5.5E-06 53.3 6.3 41 168-210 6-46 (589)
405 4dsu_A GTPase KRAS, isoform 2B 92.4 0.075 2.6E-06 46.1 3.3 24 171-194 5-28 (189)
406 1lw7_A Transcriptional regulat 92.4 0.082 2.8E-06 51.9 3.8 26 170-195 170-195 (365)
407 2oil_A CATX-8, RAS-related pro 92.4 0.077 2.6E-06 46.5 3.3 25 170-194 25-49 (193)
408 3pqc_A Probable GTP-binding pr 92.3 0.084 2.9E-06 46.1 3.6 26 169-194 22-47 (195)
409 4fp9_B Mterf domain-containing 92.3 0.026 9E-07 54.4 0.2 14 302-315 160-173 (335)
410 1tq4_A IIGP1, interferon-induc 92.3 0.085 2.9E-06 52.5 3.9 25 169-193 68-92 (413)
411 3rlf_A Maltose/maltodextrin im 92.3 0.074 2.5E-06 52.3 3.4 26 170-195 29-54 (381)
412 2y8e_A RAB-protein 6, GH09086P 92.3 0.075 2.6E-06 45.6 3.1 23 171-193 15-37 (179)
413 3t1o_A Gliding protein MGLA; G 92.3 0.077 2.6E-06 46.4 3.2 24 171-194 15-38 (198)
414 3tui_C Methionine import ATP-b 92.3 0.075 2.6E-06 51.9 3.4 26 169-194 53-78 (366)
415 2bme_A RAB4A, RAS-related prot 92.3 0.075 2.6E-06 46.1 3.1 25 170-194 10-34 (186)
416 1mh1_A RAC1; GTP-binding, GTPa 92.3 0.08 2.7E-06 45.8 3.3 23 171-193 6-28 (186)
417 2yyz_A Sugar ABC transporter, 92.3 0.076 2.6E-06 51.8 3.4 25 170-194 29-53 (359)
418 3bwd_D RAC-like GTP-binding pr 92.2 0.082 2.8E-06 45.6 3.3 24 170-193 8-31 (182)
419 2bbs_A Cystic fibrosis transme 92.2 0.063 2.1E-06 50.8 2.7 27 169-195 63-89 (290)
420 2efe_B Small GTP-binding prote 92.2 0.082 2.8E-06 45.5 3.3 24 171-194 13-36 (181)
421 3cbq_A GTP-binding protein REM 92.2 0.061 2.1E-06 47.5 2.4 23 169-191 22-44 (195)
422 2a9k_A RAS-related protein RAL 92.2 0.083 2.8E-06 45.7 3.3 25 170-194 18-42 (187)
423 2cxx_A Probable GTP-binding pr 92.2 0.071 2.4E-06 46.4 2.9 22 172-193 3-24 (190)
424 2ca6_A RAN GTPase-activating p 92.2 0.035 1.2E-06 54.9 0.9 33 158-190 83-118 (386)
425 2it1_A 362AA long hypothetical 92.2 0.078 2.7E-06 51.8 3.4 25 170-194 29-53 (362)
426 2g6b_A RAS-related protein RAB 92.1 0.085 2.9E-06 45.4 3.3 25 170-194 10-34 (180)
427 2qm8_A GTPase/ATPase; G protei 92.1 0.094 3.2E-06 50.8 3.9 29 167-195 52-80 (337)
428 3dz8_A RAS-related protein RAB 92.1 0.084 2.9E-06 46.2 3.3 24 171-194 24-47 (191)
429 1g29_1 MALK, maltose transport 92.1 0.08 2.7E-06 52.0 3.4 25 170-194 29-53 (372)
430 3t5g_A GTP-binding protein RHE 92.1 0.082 2.8E-06 45.7 3.1 25 170-194 6-30 (181)
431 3vkg_A Dynein heavy chain, cyt 92.1 0.34 1.2E-05 59.8 9.3 146 173-336 1307-1490(3245)
432 3tw8_B RAS-related protein RAB 92.1 0.078 2.7E-06 45.6 2.9 24 170-193 9-32 (181)
433 1v43_A Sugar-binding transport 92.1 0.082 2.8E-06 51.9 3.4 25 170-194 37-61 (372)
434 2bov_A RAla, RAS-related prote 92.1 0.087 3E-06 46.6 3.3 26 169-194 13-38 (206)
435 2p67_A LAO/AO transport system 92.0 0.15 5.3E-06 49.4 5.3 29 167-195 53-81 (341)
436 1zd9_A ADP-ribosylation factor 92.0 0.09 3.1E-06 45.9 3.3 24 171-194 23-46 (188)
437 2atv_A RERG, RAS-like estrogen 92.0 0.11 3.7E-06 45.7 3.9 25 169-193 27-51 (196)
438 1vg8_A RAS-related protein RAB 92.0 0.088 3E-06 46.6 3.3 26 169-194 7-32 (207)
439 2ew1_A RAS-related protein RAB 92.0 0.085 2.9E-06 46.9 3.1 25 170-194 26-50 (201)
440 2gks_A Bifunctional SAT/APS ki 92.0 0.17 5.8E-06 52.5 5.8 44 153-196 353-398 (546)
441 3clv_A RAB5 protein, putative; 92.0 0.089 3.1E-06 46.2 3.3 25 170-194 7-31 (208)
442 3d31_A Sulfate/molybdate ABC t 91.9 0.07 2.4E-06 51.9 2.7 25 170-194 26-50 (348)
443 1gwn_A RHO-related GTP-binding 91.9 0.085 2.9E-06 47.0 3.1 26 169-194 27-52 (205)
444 2b6h_A ADP-ribosylation factor 91.9 0.075 2.6E-06 46.7 2.7 26 167-192 26-51 (192)
445 2fh5_B SR-beta, signal recogni 91.9 0.091 3.1E-06 46.9 3.3 25 170-194 7-31 (214)
446 3reg_A RHO-like small GTPase; 91.9 0.093 3.2E-06 46.0 3.3 25 170-194 23-47 (194)
447 4dkx_A RAS-related protein RAB 91.9 0.093 3.2E-06 47.3 3.3 22 172-193 15-36 (216)
448 2a5j_A RAS-related protein RAB 91.9 0.095 3.2E-06 45.9 3.3 24 171-194 22-45 (191)
449 3oes_A GTPase rhebl1; small GT 91.9 0.088 3E-06 46.5 3.1 26 169-194 23-48 (201)
450 2g3y_A GTP-binding protein GEM 91.9 0.088 3E-06 47.3 3.1 23 170-192 37-59 (211)
451 2gf9_A RAS-related protein RAB 91.9 0.095 3.3E-06 45.7 3.3 25 170-194 22-46 (189)
452 3geh_A MNME, tRNA modification 91.9 1.6 5.4E-05 44.1 12.7 88 65-194 161-248 (462)
453 1bif_A 6-phosphofructo-2-kinas 91.8 0.11 3.6E-06 53.0 4.1 27 169-195 38-64 (469)
454 2fg5_A RAB-22B, RAS-related pr 91.8 0.091 3.1E-06 46.1 3.1 25 170-194 23-47 (192)
455 1ksh_A ARF-like protein 2; sma 91.8 0.11 3.7E-06 45.1 3.6 27 168-194 16-42 (186)
456 1z06_A RAS-related protein RAB 91.8 0.098 3.4E-06 45.6 3.3 24 170-193 20-43 (189)
457 3tkl_A RAS-related protein RAB 91.7 0.1 3.4E-06 45.7 3.3 25 170-194 16-40 (196)
458 3igf_A ALL4481 protein; two-do 91.7 0.12 4.2E-06 50.6 4.1 41 171-214 3-43 (374)
459 2gf0_A GTP-binding protein DI- 91.6 0.096 3.3E-06 46.0 3.1 24 170-193 8-31 (199)
460 2p5s_A RAS and EF-hand domain 91.6 0.1 3.5E-06 46.0 3.3 25 169-193 27-51 (199)
461 1oxx_K GLCV, glucose, ABC tran 91.6 0.066 2.3E-06 52.2 2.1 25 170-194 31-55 (353)
462 2gk6_A Regulator of nonsense t 91.6 0.28 9.5E-06 51.9 7.1 62 157-223 185-246 (624)
463 1x3s_A RAS-related protein RAB 91.6 0.11 3.6E-06 45.5 3.3 24 171-194 16-39 (195)
464 1pui_A ENGB, probable GTP-bind 91.6 0.069 2.3E-06 47.5 2.1 26 168-193 24-49 (210)
465 1zbd_A Rabphilin-3A; G protein 91.5 0.1 3.5E-06 46.1 3.1 24 171-194 9-32 (203)
466 2bcg_Y Protein YP2, GTP-bindin 91.4 0.1 3.6E-06 46.2 3.1 25 170-194 8-32 (206)
467 3ch4_B Pmkase, phosphomevalona 91.4 0.16 5.4E-06 45.0 4.2 51 169-229 10-61 (202)
468 1x6v_B Bifunctional 3'-phospho 91.4 0.13 4.3E-06 54.0 4.1 27 169-195 51-77 (630)
469 3gd7_A Fusion complex of cysti 91.4 0.1 3.4E-06 51.6 3.2 25 169-193 46-70 (390)
470 1ega_A Protein (GTP-binding pr 91.4 0.11 3.9E-06 49.4 3.5 25 169-193 7-31 (301)
471 1u0l_A Probable GTPase ENGC; p 91.4 0.16 5.6E-06 48.2 4.6 34 158-194 160-193 (301)
472 4bas_A ADP-ribosylation factor 91.3 0.12 4.3E-06 45.2 3.5 25 169-193 16-40 (199)
473 2qu8_A Putative nucleolar GTP- 91.3 0.12 4.1E-06 46.8 3.5 25 169-193 28-52 (228)
474 2q3h_A RAS homolog gene family 91.3 0.11 3.8E-06 45.7 3.1 24 170-193 20-43 (201)
475 3lxx_A GTPase IMAP family memb 91.3 0.13 4.4E-06 47.0 3.7 25 169-193 28-52 (239)
476 2qnr_A Septin-2, protein NEDD5 91.3 0.088 3E-06 50.2 2.6 21 172-192 20-40 (301)
477 2gza_A Type IV secretion syste 91.2 0.09 3.1E-06 51.5 2.6 34 171-207 176-209 (361)
478 3ea0_A ATPase, para family; al 91.2 0.33 1.1E-05 44.2 6.4 42 169-211 3-45 (245)
479 2fv8_A H6, RHO-related GTP-bin 91.2 0.11 3.9E-06 46.1 3.1 24 170-193 25-48 (207)
480 2o52_A RAS-related protein RAB 91.2 0.11 3.7E-06 45.9 3.0 24 170-193 25-48 (200)
481 3ez2_A Plasmid partition prote 91.1 0.47 1.6E-05 47.0 7.9 44 169-212 107-155 (398)
482 3cph_A RAS-related protein SEC 91.1 0.12 4.2E-06 45.9 3.3 25 170-194 20-44 (213)
483 2atx_A Small GTP binding prote 91.1 0.12 4E-06 45.3 3.1 23 171-193 19-41 (194)
484 1f2t_A RAD50 ABC-ATPase; DNA d 91.1 0.16 5.3E-06 42.8 3.7 25 170-194 23-47 (149)
485 3bfv_A CAPA1, CAPB2, membrane 91.1 0.37 1.3E-05 44.9 6.7 53 156-210 64-121 (271)
486 3hdt_A Putative kinase; struct 91.1 0.16 5.4E-06 46.0 4.0 46 169-228 13-58 (223)
487 2obl_A ESCN; ATPase, hydrolase 91.1 0.12 4.2E-06 50.2 3.4 27 169-195 70-96 (347)
488 3llu_A RAS-related GTP-binding 91.1 0.11 3.9E-06 45.6 3.0 24 170-193 20-43 (196)
489 1wcv_1 SOJ, segregation protei 91.1 0.16 5.6E-06 46.9 4.2 41 169-211 5-46 (257)
490 3q3j_B RHO-related GTP-binding 91.1 0.13 4.3E-06 46.2 3.3 24 171-194 28-51 (214)
491 2hup_A RAS-related protein RAB 91.1 0.12 4.1E-06 45.7 3.1 24 170-193 29-52 (201)
492 3k53_A Ferrous iron transport 91.1 0.13 4.5E-06 48.0 3.5 24 170-193 3-26 (271)
493 2rcn_A Probable GTPase ENGC; Y 91.0 0.12 4.2E-06 50.3 3.4 24 171-194 216-239 (358)
494 2j0v_A RAC-like GTP-binding pr 91.0 0.12 4.1E-06 46.0 3.1 25 170-194 9-33 (212)
495 3k9g_A PF-32 protein; ssgcid, 91.0 0.61 2.1E-05 43.2 8.1 46 168-216 25-71 (267)
496 3cio_A ETK, tyrosine-protein k 91.0 0.47 1.6E-05 45.0 7.4 42 167-210 101-143 (299)
497 1c9k_A COBU, adenosylcobinamid 91.0 0.11 3.7E-06 45.3 2.6 34 173-212 2-35 (180)
498 2gco_A H9, RHO-related GTP-bin 91.0 0.12 4.3E-06 45.6 3.1 24 171-194 26-49 (201)
499 2j1l_A RHO-related GTP-binding 91.0 0.12 3.9E-06 46.4 2.9 24 170-193 34-57 (214)
500 2fu5_C RAS-related protein RAB 90.9 0.074 2.5E-06 46.0 1.5 21 173-193 11-31 (183)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=1.6e-40 Score=351.30 Aligned_cols=285 Identities=15% Similarity=0.152 Sum_probs=216.5
Q ss_pred ccchHHHHHHHHHhcCC---CceEEEEEcCCCCcHHHHHHHHHH--hhhhcCCCCeEEEEEeCCCC--CHHHHHHHHHHH
Q 010355 152 ESRMSTLNDVINALKNP---DVHMIGAYGMAGVGKTMLVKEVAR--QAKADKLFDEVVYAEVSQRP--DVKKIQGQIADK 224 (512)
Q Consensus 152 ~gR~~~l~~l~~~L~~~---~~~vi~I~G~gGiGKTtLa~~v~~--~~~~~~~f~~~~wv~~~~~~--~~~~ll~~i~~~ 224 (512)
+||+.++++|.++|... ..++|+|+||||+||||||+++|+ +.+.+.+|++++||++++.+ ++..++..|+.+
T Consensus 131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~il~~ 210 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDILLM 210 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHHHHHHH
Confidence 39999999999999733 679999999999999999999998 45666889999999999885 789999999999
Q ss_pred hCCCCC---C-----CCchHHHHHHHHHHhCCCeEEEEEeCCCChhhhhhhCCCCCCCCeEEEEEeCCcchhccccCCcc
Q 010355 225 LGLKFY---E-----ESESGRARKLCERLKKEKKILVILDDIWTNLDLENVGIPFGVRGCRVLMTARSQDVLSSKMDCQN 296 (512)
Q Consensus 225 l~~~~~---~-----~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~~~~l~~~~~~~gs~iivTtR~~~v~~~~~~~~~ 296 (512)
++.... . .+.......+.+.|..+|||||||||||+..++ .+. ..+||+||||||+..++........
T Consensus 211 l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~-~~~---~~~gs~ilvTTR~~~v~~~~~~~~~ 286 (549)
T 2a5y_B 211 LKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETI-RWA---QELRLRCLVTTRDVEISNAASQTCE 286 (549)
T ss_dssp HTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHH-HHH---HHTTCEEEEEESBGGGGGGCCSCEE
T ss_pred HhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhh-ccc---ccCCCEEEEEcCCHHHHHHcCCCCe
Confidence 986522 1 112234567777776434999999999998765 221 1279999999999988753222446
Q ss_pred ceecCCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChhHHHHHHHHhccCCHHHHHHHHHH-hcCCCCCCCCc
Q 010355 297 NFLIGVLNESEARDLFKKLVGDKIENNDLKSLAMNIVKACRGLPIAIVTIARALRNKNTFEWKSALRE-LTRPSSGSFSG 375 (512)
Q Consensus 297 ~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~GlPLai~~ia~~L~~~~~~~w~~~l~~-l~~~~~~~~~~ 375 (512)
.|+|++|+.++||+||.+.++.....+.+.+++.+|+++|+|+||||+++|+.|+.++. .|...+.. +....
T Consensus 287 ~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~~w-~~~~~l~~~l~~~~------ 359 (549)
T 2a5y_B 287 FIEVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSGNPATLMMFFKSCEPKTF-EKMAQLNNKLESRG------ 359 (549)
T ss_dssp EEECCCCCHHHHHHHHHHTSCCCC--CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSSSH-HHHHHHHHHHHHHC------
T ss_pred EEECCCCCHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhCCChHHHHHHHHHhccchH-HHHHHhHHHhhccc------
Confidence 79999999999999999998765445778889999999999999999999999987642 33333332 21101
Q ss_pred chHHHHhHHHHHHhccchhhhhcc------------c-cccc-ccchhhhHhhcc--ccccccchhHHHHHhhhhhhhhh
Q 010355 376 VAAEAYKTSELSYNHLEGALKTAR------------L-RAVP-NWELDEEYCWAG--DLNTTLQHLNEKMAKRRMTEVEY 439 (512)
Q Consensus 376 ~~~~~~~~l~~sy~~L~~~~k~cf------------l-~~fp-~~~i~~~~~~~~--g~~~~~~~l~e~~~~~~~~~~~~ 439 (512)
...+..+|.+||+.||+++|.|| . ++|| ++.|+...|+++ ||+....
T Consensus 360 -~~~i~~~l~~Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~i~~w~a~~~G~i~~~~---------------- 422 (549)
T 2a5y_B 360 -LVGVECITPYSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIPVKLWSCVIPVDICSNE---------------- 422 (549)
T ss_dssp -SSTTCCCSSSSSSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEEHHHHHHHSCC----------------------
T ss_pred -HHHHHHHHhcccccccHHHHHHHhccchhhhhHhhheeeeCCCCeeeeeeeeeeccceeccCC----------------
Confidence 23468889999999999999997 5 8887 999999999999 8865421
Q ss_pred hhhcCCCcccccchhhhccCCcCCCCCC
Q 010355 440 ESEMSTSEEIEEEEEEENAERPMILLDT 467 (512)
Q Consensus 440 ~~~~~~~~e~~e~~~~e~~~~~~~~~~~ 467 (512)
...+.+++++ ++.++.++++.+...
T Consensus 423 --~~~~~~~~~~-~l~~L~~rsLl~~~~ 447 (549)
T 2a5y_B 423 --EEQLDDEVAD-RLKRLSKRGALLSGK 447 (549)
T ss_dssp ---CCCTHHHHH-HHHHTTTBSSCSEEE
T ss_pred --CCCCHHHHHH-HHHHHHHcCCeeEec
Confidence 1234455666 899999999888643
No 2
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=5.8e-33 Score=321.76 Aligned_cols=284 Identities=20% Similarity=0.258 Sum_probs=216.7
Q ss_pred ccccCccccccchHHHHHHHHHhc--CCCceEEEEEcCCCCcHHHHHHHHHHhhhh-cC-CCCeEEEEEeCCCCC--HHH
Q 010355 143 TSIKGYEAFESRMSTLNDVINALK--NPDVHMIGAYGMAGVGKTMLVKEVARQAKA-DK-LFDEVVYAEVSQRPD--VKK 216 (512)
Q Consensus 143 ~~~~~~~~~~gR~~~l~~l~~~L~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~-~~-~f~~~~wv~~~~~~~--~~~ 216 (512)
..|+.+..|+||+.++++|.++|. ....++|+|+||||+||||||+++|++.+. .. +|+.++|+++++... ...
T Consensus 118 ~~p~~~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 197 (1249)
T 3sfz_A 118 GVPQRPVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLM 197 (1249)
T ss_dssp TCCCCCSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHH
T ss_pred CCCCCCceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHHH
Confidence 345667789999999999999995 456899999999999999999999987543 23 457889999988543 444
Q ss_pred HHHHHHHHhCCCCCC-----CCchHHHHHHHHHHhC-CCeEEEEEeCCCChhhhhhhCCCCCCCCeEEEEEeCCcchhcc
Q 010355 217 IQGQIADKLGLKFYE-----ESESGRARKLCERLKK-EKKILVILDDIWTNLDLENVGIPFGVRGCRVLMTARSQDVLSS 290 (512)
Q Consensus 217 ll~~i~~~l~~~~~~-----~~~~~~~~~l~~~l~~-~k~~LlVlDdv~~~~~~~~l~~~~~~~gs~iivTtR~~~v~~~ 290 (512)
.+..++..++..... .........+...+.. ++|+||||||||+...|..+ ++||+||||||+..++..
T Consensus 198 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~~~~~~-----~~~~~ilvTtR~~~~~~~ 272 (1249)
T 3sfz_A 198 KLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPWVLKAF-----DNQCQILLTTRDKSVTDS 272 (1249)
T ss_dssp HHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHHHHTTT-----CSSCEEEEEESSTTTTTT
T ss_pred HHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHHHHHhh-----cCCCEEEEEcCCHHHHHh
Confidence 566677777643221 2223344455555542 24999999999999888776 468999999999988744
Q ss_pred ccCCccceecCC-CCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChhHHHHHHHHhccCCHHHHHHHHHHhcCCC
Q 010355 291 KMDCQNNFLIGV-LNESEARDLFKKLVGDKIENNDLKSLAMNIVKACRGLPIAIVTIARALRNKNTFEWKSALRELTRPS 369 (512)
Q Consensus 291 ~~~~~~~~~l~~-L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~GlPLai~~ia~~L~~~~~~~w~~~l~~l~~~~ 369 (512)
.......+.+.+ |+.++|++||...++... +.+.+.+.+|+++|+|+||||+++|++|+.++ ..|..++..+....
T Consensus 273 ~~~~~~~~~~~~~l~~~~a~~l~~~~~~~~~--~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~-~~~~~~l~~l~~~~ 349 (1249)
T 3sfz_A 273 VMGPKHVVPVESGLGREKGLEILSLFVNMKK--EDLPAEAHSIIKECKGSPLVVSLIGALLRDFP-NRWAYYLRQLQNKQ 349 (1249)
T ss_dssp CCSCBCCEECCSSCCHHHHHHHHHHHHTSCS--TTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS-SCHHHHHHHHHSCC
T ss_pred hcCCceEEEecCCCCHHHHHHHHHHhhCCCh--hhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh-hHHHHHHHHHhhhh
Confidence 456667899996 999999999999886332 33446789999999999999999999999775 46999998886554
Q ss_pred CCCC----CcchHHHHhHHHHHHhccchhhhhccc--cccc-ccchhh----hHhhccccccccchhHHHHHhhhhh
Q 010355 370 SGSF----SGVAAEAYKTSELSYNHLEGALKTARL--RAVP-NWELDE----EYCWAGDLNTTLQHLNEKMAKRRMT 435 (512)
Q Consensus 370 ~~~~----~~~~~~~~~~l~~sy~~L~~~~k~cfl--~~fp-~~~i~~----~~~~~~g~~~~~~~l~e~~~~~~~~ 435 (512)
...+ ......+..+|.+||+.||+++|.||+ ++|| ++.|++ ..|.+.+ ......+.++..+.++.
T Consensus 350 ~~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~~-~~~~~~l~~L~~~sl~~ 425 (1249)
T 3sfz_A 350 FKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLET-EEVEDILQEFVNKSLLF 425 (1249)
T ss_dssp CCCSSCTTCTTHHHHHHHHHHHHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCCH-HHHHHHHHHHHHTTSCE
T ss_pred hhhcccccccchHHHHHHHHHHHHhCCHHHHHHHHHhCccCCCCeeCHHHHHHHhCCCH-HHHHHHHHHHHhccceE
Confidence 3322 122467999999999999999999999 6687 889997 5554433 34556777777777664
No 3
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=100.00 E-value=9.8e-34 Score=304.80 Aligned_cols=257 Identities=17% Similarity=0.170 Sum_probs=196.5
Q ss_pred cccchHHHHHHHHHhcC-CCceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCe-EEEEEeCCCCCHHHHHHHHHHHhCCC
Q 010355 151 FESRMSTLNDVINALKN-PDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDE-VVYAEVSQRPDVKKIQGQIADKLGLK 228 (512)
Q Consensus 151 ~~gR~~~l~~l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~-~~wv~~~~~~~~~~ll~~i~~~l~~~ 228 (512)
.+||+.++++|.++|.. ...++|+|+||||+||||||+++|++.+.+.+|+. ++|+++++.++...++..|+..++..
T Consensus 130 ~VGRe~eLeeL~elL~~~d~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~lL~~i 209 (1221)
T 1vt4_I 130 NVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQI 209 (1221)
T ss_dssp CCCCHHHHHHHHHHHHHCCSSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHhccCCCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHHhhc
Confidence 48999999999999874 55799999999999999999999987666677875 99999999999888888887754321
Q ss_pred ---CCCC-----Cc----hHHHHHHHHHHh--CCCeEEEEEeCCCChhhhhhhCCCCCCCCeEEEEEeCCcchhccccCC
Q 010355 229 ---FYEE-----SE----SGRARKLCERLK--KEKKILVILDDIWTNLDLENVGIPFGVRGCRVLMTARSQDVLSSKMDC 294 (512)
Q Consensus 229 ---~~~~-----~~----~~~~~~l~~~l~--~~k~~LlVlDdv~~~~~~~~l~~~~~~~gs~iivTtR~~~v~~~~~~~ 294 (512)
.... .. ......+...|. .++|+||||||||+...|..+. +||+||||||+..++.. +..
T Consensus 210 ~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~eqLe~f~-----pGSRILVTTRd~~Va~~-l~g 283 (1221)
T 1vt4_I 210 DPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFN-----LSCKILLTTRFKQVTDF-LSA 283 (1221)
T ss_dssp CSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCHHHHHHHH-----SSCCEEEECSCSHHHHH-HHH
T ss_pred CcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChHHHHHhhC-----CCeEEEEeccChHHHHh-cCC
Confidence 1100 11 122334444441 4689999999999988888762 68999999999987632 222
Q ss_pred ccceecC------CCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChhHHHHHHHHhccC--CHHHHHHHHHHhc
Q 010355 295 QNNFLIG------VLNESEARDLFKKLVGDKIENNDLKSLAMNIVKACRGLPIAIVTIARALRNK--NTFEWKSALRELT 366 (512)
Q Consensus 295 ~~~~~l~------~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~GlPLai~~ia~~L~~~--~~~~w~~~l~~l~ 366 (512)
...+.|+ +|+.++|++||.+.++.. .. ++..+ .|+|+||||.++|+.|+.+ +...|...
T Consensus 284 ~~vy~LeL~d~dL~LS~eEA~eLF~~~~g~~--~e---eL~~e---ICgGLPLALkLaGs~Lr~k~~s~eeW~~~----- 350 (1221)
T 1vt4_I 284 ATTTHISLDHHSMTLTPDEVKSLLLKYLDCR--PQ---DLPRE---VLTTNPRRLSIIAESIRDGLATWDNWKHV----- 350 (1221)
T ss_dssp HSSCEEEECSSSSCCCHHHHHHHHHHHHCCC--TT---THHHH---HCCCCHHHHHHHHHHHHHSCSSHHHHHHC-----
T ss_pred CeEEEecCccccCCcCHHHHHHHHHHHcCCC--HH---HHHHH---HhCCCHHHHHHHHHHHhCCCCCHHHHhcC-----
Confidence 3356666 999999999999986533 11 23333 3999999999999999977 77888652
Q ss_pred CCCCCCCCcchHHHHhHHHHHHhccchhh-hhccc--cccc-ccchhh----hHhhccccccccchhHHHHHhhhhh
Q 010355 367 RPSSGSFSGVAAEAYKTSELSYNHLEGAL-KTARL--RAVP-NWELDE----EYCWAGDLNTTLQHLNEKMAKRRMT 435 (512)
Q Consensus 367 ~~~~~~~~~~~~~~~~~l~~sy~~L~~~~-k~cfl--~~fp-~~~i~~----~~~~~~g~~~~~~~l~e~~~~~~~~ 435 (512)
. ...+..+|.+||+.||++. |.||+ |+|| ++.|+. ..|.+.|.......+.++..+++..
T Consensus 351 -----~----~~~I~aaLelSYd~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW~aeGeedAe~~L~eLvdRSLLq 418 (1221)
T 1vt4_I 351 -----N----CDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVE 418 (1221)
T ss_dssp -----S----CHHHHHHHHHHHHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSCSHHHHHHHHHHHTSSSSS
T ss_pred -----C----hhHHHHHHHHHHHhCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCCHHHHHHHHHHHHhhCCEE
Confidence 1 3679999999999999999 99999 7787 888886 6788776444556677777666554
No 4
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=100.00 E-value=8.3e-32 Score=288.15 Aligned_cols=279 Identities=20% Similarity=0.301 Sum_probs=203.2
Q ss_pred ccCccccccchHHHHHHHHHhc--CCCceEEEEEcCCCCcHHHHHHHHHHhhhh-cCCC-CeEEEEEeCCCCCHHHHHHH
Q 010355 145 IKGYEAFESRMSTLNDVINALK--NPDVHMIGAYGMAGVGKTMLVKEVARQAKA-DKLF-DEVVYAEVSQRPDVKKIQGQ 220 (512)
Q Consensus 145 ~~~~~~~~gR~~~l~~l~~~L~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~-~~~f-~~~~wv~~~~~~~~~~ll~~ 220 (512)
|+.+..|+||+.+++.|..+|. .++.++|+|+|+||+||||||.++++.... ..+| ++++|++++.. +...++..
T Consensus 120 P~~~~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~-~~~~~~~~ 198 (591)
T 1z6t_A 120 PQRPVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ-DKSGLLMK 198 (591)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC-CHHHHHHH
T ss_pred CCCCCeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCC-chHHHHHH
Confidence 4556789999999999999997 356789999999999999999999987643 4568 58999999875 33344444
Q ss_pred H---HHHhCCCC-----CCCCchHHHHHHHHHHhC-CCeEEEEEeCCCChhhhhhhCCCCCCCCeEEEEEeCCcchhccc
Q 010355 221 I---ADKLGLKF-----YEESESGRARKLCERLKK-EKKILVILDDIWTNLDLENVGIPFGVRGCRVLMTARSQDVLSSK 291 (512)
Q Consensus 221 i---~~~l~~~~-----~~~~~~~~~~~l~~~l~~-~k~~LlVlDdv~~~~~~~~l~~~~~~~gs~iivTtR~~~v~~~~ 291 (512)
+ +..++... ...........+...+.. .+++||||||+|+...+..+ ++|++||||||...++...
T Consensus 199 l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~~l~~l-----~~~~~ilvTsR~~~~~~~~ 273 (591)
T 1z6t_A 199 LQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVLKAF-----DSQCQILLTTRDKSVTDSV 273 (591)
T ss_dssp HHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHHHHHTT-----CSSCEEEEEESCGGGGTTC
T ss_pred HHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHHHHHHh-----cCCCeEEEECCCcHHHHhc
Confidence 3 44555211 112223445556666653 37899999999998777654 4689999999999875432
Q ss_pred cCCccceec---CCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChhHHHHHHHHhccCCHHHHHHHHHHhcCC
Q 010355 292 MDCQNNFLI---GVLNESEARDLFKKLVGDKIENNDLKSLAMNIVKACRGLPIAIVTIARALRNKNTFEWKSALRELTRP 368 (512)
Q Consensus 292 ~~~~~~~~l---~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~GlPLai~~ia~~L~~~~~~~w~~~l~~l~~~ 368 (512)
.+ ..+.+ .+|+.+++++||...++... ....+.+.+|+++|+|+||||.++|++|+.+. ..|..++..+...
T Consensus 274 ~~--~~~~v~~l~~L~~~ea~~L~~~~~~~~~--~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~-~~w~~~l~~l~~~ 348 (591)
T 1z6t_A 274 MG--PKYVVPVESSLGKEKGLEILSLFVNMKK--ADLPEQAHSIIKECKGSPLVVSLIGALLRDFP-NRWEYYLKQLQNK 348 (591)
T ss_dssp CS--CEEEEECCSSCCHHHHHHHHHHHHTSCG--GGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST-TCHHHHHHHHHSC
T ss_pred CC--CceEeecCCCCCHHHHHHHHHHHhCCCc--ccccHHHHHHHHHhCCCcHHHHHHHHHHhcCc-hhHHHHHHHHHHh
Confidence 22 23343 58999999999999987421 22235788999999999999999999998763 3698888888654
Q ss_pred CCCCC----CcchHHHHhHHHHHHhccchhhhhccc--cccc-ccchhh----hHhhccccccccchhHHHHHhhhhh
Q 010355 369 SSGSF----SGVAAEAYKTSELSYNHLEGALKTARL--RAVP-NWELDE----EYCWAGDLNTTLQHLNEKMAKRRMT 435 (512)
Q Consensus 369 ~~~~~----~~~~~~~~~~l~~sy~~L~~~~k~cfl--~~fp-~~~i~~----~~~~~~g~~~~~~~l~e~~~~~~~~ 435 (512)
....+ ......+..+|.+||+.||++.|.||+ ++|| ++.|+. ..|.. ........+.++..+.++.
T Consensus 349 ~~~~~~~~~~~~~~~l~~~l~~s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~l~~~-~~~~~~~~l~~L~~~~Ll~ 425 (591)
T 1z6t_A 349 QFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDM-ETEEVEDILQEFVNKSLLF 425 (591)
T ss_dssp CCCCSSCCCSSCCHHHHHHHHHHHHTSCTTTHHHHHHGGGCCTTCCEEHHHHHHHHTC-CHHHHHHHHHHHHHTTSSE
T ss_pred HHHHhhhccccchHHHHHHHHHHHHhCCHHHHHHHHHccccCCCCccCHHHHHHHhcc-CHHHHHHHHHHHHhCcCeE
Confidence 32221 222468999999999999999999999 7777 888886 33433 3223455677777666543
No 5
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.64 E-value=2.4e-15 Score=149.40 Aligned_cols=198 Identities=12% Similarity=0.124 Sum_probs=129.9
Q ss_pred cccCccccccchHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCC------CHHHH
Q 010355 144 SIKGYEAFESRMSTLNDVINALKNPDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRP------DVKKI 217 (512)
Q Consensus 144 ~~~~~~~~~gR~~~l~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~------~~~~l 217 (512)
++..+..|+||+.+++.|..++..+ +++.|+|++|+|||||++++++... ++|+++.... +...+
T Consensus 7 ~~~~~~~~~gR~~el~~L~~~l~~~--~~v~i~G~~G~GKT~Ll~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~ 77 (350)
T 2qen_A 7 PKTRREDIFDREEESRKLEESLENY--PLTLLLGIRRVGKSSLLRAFLNERP-------GILIDCRELYAERGHITREEL 77 (350)
T ss_dssp CCCSGGGSCSCHHHHHHHHHHHHHC--SEEEEECCTTSSHHHHHHHHHHHSS-------EEEEEHHHHHHTTTCBCHHHH
T ss_pred CCCChHhcCChHHHHHHHHHHHhcC--CeEEEECCCcCCHHHHHHHHHHHcC-------cEEEEeecccccccCCCHHHH
Confidence 3455678999999999999988754 7999999999999999999987641 6788765432 56677
Q ss_pred HHHHHHHhCC-----------------CCC--CCCchHHHHHHHHHHhCCCeEEEEEeCCCChhh---------hhhhCC
Q 010355 218 QGQIADKLGL-----------------KFY--EESESGRARKLCERLKKEKKILVILDDIWTNLD---------LENVGI 269 (512)
Q Consensus 218 l~~i~~~l~~-----------------~~~--~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~---------~~~l~~ 269 (512)
+..+...+.. ... ..........+.......++++|||||++.... +..+..
T Consensus 78 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~L~~ 157 (350)
T 2qen_A 78 IKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALFAY 157 (350)
T ss_dssp HHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHHHHH
Confidence 7777665542 000 011122233333333222389999999975432 222211
Q ss_pred CCC-CCCeEEEEEeCCcchhcc----------ccCC-ccceecCCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcC
Q 010355 270 PFG-VRGCRVLMTARSQDVLSS----------KMDC-QNNFLIGVLNESEARDLFKKLVGDKIENNDLKSLAMNIVKACR 337 (512)
Q Consensus 270 ~~~-~~gs~iivTtR~~~v~~~----------~~~~-~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~ 337 (512)
... .++.++|+|++....... ..+. ...+.+.||+.+++.+++...+....... -.+.+..|+..|+
T Consensus 158 ~~~~~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~~-~~~~~~~i~~~tg 236 (350)
T 2qen_A 158 AYDSLPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLDV-PENEIEEAVELLD 236 (350)
T ss_dssp HHHHCTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTCCC-CHHHHHHHHHHHT
T ss_pred HHHhcCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHhC
Confidence 111 257889999887532110 1111 24789999999999999987653221111 1356789999999
Q ss_pred CChhHHHHHHHHhc
Q 010355 338 GLPIAIVTIARALR 351 (512)
Q Consensus 338 GlPLai~~ia~~L~ 351 (512)
|+|+++..++..+.
T Consensus 237 G~P~~l~~~~~~~~ 250 (350)
T 2qen_A 237 GIPGWLVVFGVEYL 250 (350)
T ss_dssp TCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHh
Confidence 99999999987653
No 6
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.57 E-value=2.3e-14 Score=142.61 Aligned_cols=194 Identities=11% Similarity=0.217 Sum_probs=124.7
Q ss_pred ccCccccccchHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCC-----CCHHHHHH
Q 010355 145 IKGYEAFESRMSTLNDVINALKNPDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQR-----PDVKKIQG 219 (512)
Q Consensus 145 ~~~~~~~~gR~~~l~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-----~~~~~ll~ 219 (512)
+..+..|+||+.+++.|.. +.. +++.|+|++|+|||+|++++++.... ..+|+++... .+...++.
T Consensus 9 ~~~~~~~~gR~~el~~L~~-l~~---~~v~i~G~~G~GKT~L~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~ 79 (357)
T 2fna_A 9 KDNRKDFFDREKEIEKLKG-LRA---PITLVLGLRRTGKSSIIKIGINELNL-----PYIYLDLRKFEERNYISYKDFLL 79 (357)
T ss_dssp CCSGGGSCCCHHHHHHHHH-TCS---SEEEEEESTTSSHHHHHHHHHHHHTC-----CEEEEEGGGGTTCSCCCHHHHHH
T ss_pred CCCHHHhcChHHHHHHHHH-hcC---CcEEEECCCCCCHHHHHHHHHHhcCC-----CEEEEEchhhccccCCCHHHHHH
Confidence 3456679999999999999 765 69999999999999999999987641 2578887642 34455555
Q ss_pred HHHHHhC------------------CCCCCCC--------chHHHHHHHHHHhC-C-CeEEEEEeCCCChh-----hh-h
Q 010355 220 QIADKLG------------------LKFYEES--------ESGRARKLCERLKK-E-KKILVILDDIWTNL-----DL-E 265 (512)
Q Consensus 220 ~i~~~l~------------------~~~~~~~--------~~~~~~~l~~~l~~-~-k~~LlVlDdv~~~~-----~~-~ 265 (512)
.+...+. .+.+... .......+...+.. . ++++|||||++... .+ .
T Consensus 80 ~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~~~~~~~~~~ 159 (357)
T 2fna_A 80 ELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVKLRGVNLLP 159 (357)
T ss_dssp HHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGGGCTTCCCHH
T ss_pred HHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhhccCchhHHH
Confidence 5544331 0000000 01123344444432 1 48999999996532 11 1
Q ss_pred hhCCCCC-CCCeEEEEEeCCcchhcc----------ccCC-ccceecCCCCHHHHHHHHHHHhCC-CCCCchhHHHHHHH
Q 010355 266 NVGIPFG-VRGCRVLMTARSQDVLSS----------KMDC-QNNFLIGVLNESEARDLFKKLVGD-KIENNDLKSLAMNI 332 (512)
Q Consensus 266 ~l~~~~~-~~gs~iivTtR~~~v~~~----------~~~~-~~~~~l~~L~~~ea~~Lf~~~~~~-~~~~~~~~~~~~~I 332 (512)
.+..... .++.++|+|++....... ..+. ...+.+.||+.+++.+++...+.. ...... ...|
T Consensus 160 ~l~~~~~~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~----~~~i 235 (357)
T 2fna_A 160 ALAYAYDNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADIDFKD----YEVV 235 (357)
T ss_dssp HHHHHHHHCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCCCCC----HHHH
T ss_pred HHHHHHHcCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCCCCCc----HHHH
Confidence 1111111 247889999997642110 1112 257899999999999999876531 111121 1789
Q ss_pred HHHcCCChhHHHHHHHHhc
Q 010355 333 VKACRGLPIAIVTIARALR 351 (512)
Q Consensus 333 ~~~~~GlPLai~~ia~~L~ 351 (512)
+..|+|+|+++..++..+.
T Consensus 236 ~~~t~G~P~~l~~~~~~~~ 254 (357)
T 2fna_A 236 YEKIGGIPGWLTYFGFIYL 254 (357)
T ss_dssp HHHHCSCHHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHc
Confidence 9999999999999988765
No 7
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.57 E-value=6.7e-14 Score=142.33 Aligned_cols=237 Identities=14% Similarity=0.092 Sum_probs=148.9
Q ss_pred cccccchHHHHHHHHHh-c----C--CCceEEEE--EcCCCCcHHHHHHHHHHhhhhc---CCC-CeEEEEEeCCCCCHH
Q 010355 149 EAFESRMSTLNDVINAL-K----N--PDVHMIGA--YGMAGVGKTMLVKEVARQAKAD---KLF-DEVVYAEVSQRPDVK 215 (512)
Q Consensus 149 ~~~~gR~~~l~~l~~~L-~----~--~~~~vi~I--~G~gGiGKTtLa~~v~~~~~~~---~~f-~~~~wv~~~~~~~~~ 215 (512)
..|+||+.+++.|..++ . . ...+.+.| +|++|+|||||++.+++..... ..| ..++|+++....+..
T Consensus 22 ~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (412)
T 1w5s_A 22 PELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNLY 101 (412)
T ss_dssp SSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSHH
T ss_pred CCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCCHH
Confidence 67999999999999888 4 2 34567778 9999999999999999876532 112 246788877777899
Q ss_pred HHHHHHHHHhCCCCCC--CCchHHHHHHHHHHh-CCCeEEEEEeCCCChh--------hhhhh-CCC--CC--C--CCeE
Q 010355 216 KIQGQIADKLGLKFYE--ESESGRARKLCERLK-KEKKILVILDDIWTNL--------DLENV-GIP--FG--V--RGCR 277 (512)
Q Consensus 216 ~ll~~i~~~l~~~~~~--~~~~~~~~~l~~~l~-~~k~~LlVlDdv~~~~--------~~~~l-~~~--~~--~--~gs~ 277 (512)
.++..++..++...+. .+.......+...+. .+++++|||||++... .+..+ ... .. + .+..
T Consensus 102 ~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~v~ 181 (412)
T 1w5s_A 102 TILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNRIG 181 (412)
T ss_dssp HHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCCBEE
T ss_pred HHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCCceEE
Confidence 9999999999875432 222334455555554 3579999999997532 22221 111 11 2 4456
Q ss_pred EEEEeCCcchhcc-------c-cCCccceecCCCCHHHHHHHHHHHhC---CCCCCchhHHHHHHHHHHcC------CCh
Q 010355 278 VLMTARSQDVLSS-------K-MDCQNNFLIGVLNESEARDLFKKLVG---DKIENNDLKSLAMNIVKACR------GLP 340 (512)
Q Consensus 278 iivTtR~~~v~~~-------~-~~~~~~~~l~~L~~~ea~~Lf~~~~~---~~~~~~~~~~~~~~I~~~~~------GlP 340 (512)
||+||+...+... . ......+.+.||+.++++++|...+. .... -..+....|++.|+ |+|
T Consensus 182 lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~--~~~~~~~~i~~~~~~~~~~~G~p 259 (412)
T 1w5s_A 182 FLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDTV--WEPRHLELISDVYGEDKGGDGSA 259 (412)
T ss_dssp EEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCTTS--CCHHHHHHHHHHHCGGGTSCCCH
T ss_pred EEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCC--CChHHHHHHHHHHHHhccCCCcH
Confidence 8888875542100 0 01112399999999999999976642 2111 11356788999999 999
Q ss_pred hHHHHHHHHhc------cC---CHHHHHHHHHHhcCCCCCCCCcchHHHHhHHHHHHhccchhhhhccc
Q 010355 341 IAIVTIARALR------NK---NTFEWKSALRELTRPSSGSFSGVAAEAYKTSELSYNHLEGALKTARL 400 (512)
Q Consensus 341 Lai~~ia~~L~------~~---~~~~w~~~l~~l~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~cfl 400 (512)
..+..+..... +. +...+..++..... ...+.-++..||.+.+.++.
T Consensus 260 ~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~~-------------~~~~~~~l~~l~~~~~~~l~ 315 (412)
T 1w5s_A 260 RRAIVALKMACEMAEAMGRDSLSEDLVRKAVSENEA-------------ASIQTHELEALSIHELIILR 315 (412)
T ss_dssp HHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC-------------------CCSSSSSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc-------------cchHHHHHHcCCHHHHHHHH
Confidence 76665544321 11 33444444433210 11233355678888887776
No 8
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.52 E-value=4.8e-13 Score=134.68 Aligned_cols=232 Identities=15% Similarity=0.112 Sum_probs=152.4
Q ss_pred cccccchHHHHHHHHHhc----CCCceEEEEEcCCCCcHHHHHHHHHHhhhhcC-----C-CCeEEEEEeCCCC-CHHHH
Q 010355 149 EAFESRMSTLNDVINALK----NPDVHMIGAYGMAGVGKTMLVKEVARQAKADK-----L-FDEVVYAEVSQRP-DVKKI 217 (512)
Q Consensus 149 ~~~~gR~~~l~~l~~~L~----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-----~-f~~~~wv~~~~~~-~~~~l 217 (512)
..|+||+.+++.|..++. ....+.+.|+|++|+|||+||+.+++...... . ...++|+++.... +...+
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 99 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQAV 99 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHHHH
Confidence 679999999999887665 44467899999999999999999998764321 1 3457788877766 88889
Q ss_pred HHHHHHHh-CCCCCC--CCchHHHHHHHHHHhCCCeEEEEEeCCCChhh-------hhhhCCCCCCCCeEEEEEeCCcch
Q 010355 218 QGQIADKL-GLKFYE--ESESGRARKLCERLKKEKKILVILDDIWTNLD-------LENVGIPFGVRGCRVLMTARSQDV 287 (512)
Q Consensus 218 l~~i~~~l-~~~~~~--~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~-------~~~l~~~~~~~gs~iivTtR~~~v 287 (512)
+..++..+ +..... .........+...+... +.+||||+++.... +..+... ..+..||+||+....
T Consensus 100 ~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~-~~vlilDEi~~l~~~~~~~~~l~~l~~~--~~~~~iI~~t~~~~~ 176 (384)
T 2qby_B 100 LSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNI-RAIIYLDEVDTLVKRRGGDIVLYQLLRS--DANISVIMISNDINV 176 (384)
T ss_dssp HHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSS-CEEEEEETTHHHHHSTTSHHHHHHHHTS--SSCEEEEEECSSTTT
T ss_pred HHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccC-CCEEEEECHHHhccCCCCceeHHHHhcC--CcceEEEEEECCCch
Confidence 99988887 332221 22344566667777653 44999999975421 2222111 167889999887532
Q ss_pred h----cccc-CCccceecCCCCHHHHHHHHHHHhC---C-CCCCchhHHHHHHHHHHcC---CChh-HHHHHHHHh--c-
Q 010355 288 L----SSKM-DCQNNFLIGVLNESEARDLFKKLVG---D-KIENNDLKSLAMNIVKACR---GLPI-AIVTIARAL--R- 351 (512)
Q Consensus 288 ~----~~~~-~~~~~~~l~~L~~~ea~~Lf~~~~~---~-~~~~~~~~~~~~~I~~~~~---GlPL-ai~~ia~~L--~- 351 (512)
. .... .....+.++|++.++...+|...+. . ...++ +....|++.|+ |.|. ++.++-... .
T Consensus 177 ~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~ 253 (384)
T 2qby_B 177 RDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYDD---EILSYIAAISAKEHGDARKAVNLLFRAAQLAS 253 (384)
T ss_dssp TTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCCS---HHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTT
T ss_pred HhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcCH---HHHHHHHHHHHhccCCHHHHHHHHHHHHHHhc
Confidence 1 1000 1123899999999999999998753 1 22222 45677888888 9887 443433332 1
Q ss_pred ---cCCHHHHHHHHHHhcCCCCCCCCcchHHHHhHHHHHHhccchhhhhccc
Q 010355 352 ---NKNTFEWKSALRELTRPSSGSFSGVAAEAYKTSELSYNHLEGALKTARL 400 (512)
Q Consensus 352 ---~~~~~~w~~~l~~l~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~cfl 400 (512)
..+.+.+..++.... ...+..++..|+.+.+..+.
T Consensus 254 ~~~~i~~~~v~~~~~~~~--------------~~~~~~~~~~l~~~~~~~l~ 291 (384)
T 2qby_B 254 GGGIIRKEHVDKAIVDYE--------------QERLIEAVKALPFHYKLALR 291 (384)
T ss_dssp SSSCCCHHHHHHHHHHHH--------------HHHHHHHHHSSCHHHHHHHH
T ss_pred CCCccCHHHHHHHHHHHh--------------cchHHHHHHcCCHHHHHHHH
Confidence 126677776666532 23455667788877776555
No 9
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.48 E-value=5.7e-13 Score=133.97 Aligned_cols=239 Identities=15% Similarity=0.103 Sum_probs=150.4
Q ss_pred ccccccchHHHHHHHHHhc----CCCceEEEEEcCCCCcHHHHHHHHHHhhhhcCC-CCeEEEEEeCCCCCHHHHHHHHH
Q 010355 148 YEAFESRMSTLNDVINALK----NPDVHMIGAYGMAGVGKTMLVKEVARQAKADKL-FDEVVYAEVSQRPDVKKIQGQIA 222 (512)
Q Consensus 148 ~~~~~gR~~~l~~l~~~L~----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-f~~~~wv~~~~~~~~~~ll~~i~ 222 (512)
+..|+||+.+++.|..++. ....+.+.|+|++|+|||||++.+++....... -..++|+++....+...++..++
T Consensus 19 p~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~ 98 (386)
T 2qby_A 19 PDELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPYRVLADLL 98 (386)
T ss_dssp CSCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCSHHHHHHHHT
T ss_pred CCCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCCHHHHHHHHH
Confidence 3679999999999999887 445678999999999999999999987753211 23567888777778888888888
Q ss_pred HHhCCCCCCC--CchHHHHHHHHHHhC-CCeEEEEEeCCCChh------hhhhhCCCC---CCCCeEEEEEeCCcchhcc
Q 010355 223 DKLGLKFYEE--SESGRARKLCERLKK-EKKILVILDDIWTNL------DLENVGIPF---GVRGCRVLMTARSQDVLSS 290 (512)
Q Consensus 223 ~~l~~~~~~~--~~~~~~~~l~~~l~~-~k~~LlVlDdv~~~~------~~~~l~~~~---~~~gs~iivTtR~~~v~~~ 290 (512)
..++...... +.......+...+.. +++.+||||+++... .+..+.... ...+..+|+||+.......
T Consensus 99 ~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~~~~~ 178 (386)
T 2qby_A 99 ESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVKFVDL 178 (386)
T ss_dssp TTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGGGGGG
T ss_pred HHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCChHhh
Confidence 8887653322 233345556666653 458999999996532 122221001 2345677888886543211
Q ss_pred c----cC--CccceecCCCCHHHHHHHHHHHhCC-CCCCchhHHHHHHHHHHcC---CChhHHHHHHHHhc------c--
Q 010355 291 K----MD--CQNNFLIGVLNESEARDLFKKLVGD-KIENNDLKSLAMNIVKACR---GLPIAIVTIARALR------N-- 352 (512)
Q Consensus 291 ~----~~--~~~~~~l~~L~~~ea~~Lf~~~~~~-~~~~~~~~~~~~~I~~~~~---GlPLai~~ia~~L~------~-- 352 (512)
. .. ....+.++|++.++..++|...+.. .....-...+...|++.++ |.|..+..+..... +
T Consensus 179 ~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a~~~~~~ 258 (386)
T 2qby_A 179 LDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLPDNVIKLCAALAAREHGDARRALDLLRVSGEIAERMKDT 258 (386)
T ss_dssp CTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCS
T ss_pred hCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCC
Confidence 0 01 1147999999999999999986531 0011112345677778887 99985444333221 1
Q ss_pred C-CHHHHHHHHHHhcCCCCCCCCcchHHHHhHHHHHHhccchhhhhccc
Q 010355 353 K-NTFEWKSALRELTRPSSGSFSGVAAEAYKTSELSYNHLEGALKTARL 400 (512)
Q Consensus 353 ~-~~~~w~~~l~~l~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~cfl 400 (512)
. +...+..++..+. ...+.-++..||...+..+.
T Consensus 259 ~i~~~~v~~a~~~~~--------------~~~~~~~~~~l~~~~~~il~ 293 (386)
T 2qby_A 259 KVKEEYVYMAKEEIE--------------RDRVRDIILTLPFHSKLVLM 293 (386)
T ss_dssp SCCHHHHHHHHHHHH--------------HHHHHHHHHTSCHHHHHHHH
T ss_pred ccCHHHHHHHHHHHh--------------hchHHHHHHcCCHHHHHHHH
Confidence 1 4455555544421 23455566778877765555
No 10
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.44 E-value=2.6e-12 Score=129.20 Aligned_cols=235 Identities=16% Similarity=0.167 Sum_probs=152.0
Q ss_pred cccccchHHHHHHHHHhc----CCCceEEEEEcCCCCcHHHHHHHHHHhhhhc----CCCCeEEEEEeCCCCCHHHHHHH
Q 010355 149 EAFESRMSTLNDVINALK----NPDVHMIGAYGMAGVGKTMLVKEVARQAKAD----KLFDEVVYAEVSQRPDVKKIQGQ 220 (512)
Q Consensus 149 ~~~~gR~~~l~~l~~~L~----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~----~~f~~~~wv~~~~~~~~~~ll~~ 220 (512)
..|+||+.+++.|..++. ....+.+.|+|++|+||||||+.+++..... ..-..++|+++....+...++..
T Consensus 19 ~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 98 (387)
T 2v1u_A 19 DVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVASA 98 (387)
T ss_dssp SCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHHHHH
Confidence 679999999999999884 3456789999999999999999999876432 11234678888888899999999
Q ss_pred HHHHhCCCCCCC--CchHHHHHHHHHHh-CCCeEEEEEeCCCChhh-------hhhh-CCCC--C-CCCeEEEEEeCCcc
Q 010355 221 IADKLGLKFYEE--SESGRARKLCERLK-KEKKILVILDDIWTNLD-------LENV-GIPF--G-VRGCRVLMTARSQD 286 (512)
Q Consensus 221 i~~~l~~~~~~~--~~~~~~~~l~~~l~-~~k~~LlVlDdv~~~~~-------~~~l-~~~~--~-~~gs~iivTtR~~~ 286 (512)
++..++...+.. +.......+...+. .+++++||||+++.... +..+ ..+. . ..+..+|+||+...
T Consensus 99 l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t~~~~ 178 (387)
T 2v1u_A 99 IAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGITNSLG 178 (387)
T ss_dssp HHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEECSCST
T ss_pred HHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEECCCc
Confidence 999997654332 23344556666664 35689999999975432 1111 1111 1 34567788877653
Q ss_pred hh----ccccCCc--cceecCCCCHHHHHHHHHHHhCC----CCCCchhHHHHHHHHHHcC---CChhHHH-HHHHHhc-
Q 010355 287 VL----SSKMDCQ--NNFLIGVLNESEARDLFKKLVGD----KIENNDLKSLAMNIVKACR---GLPIAIV-TIARALR- 351 (512)
Q Consensus 287 v~----~~~~~~~--~~~~l~~L~~~ea~~Lf~~~~~~----~~~~~~~~~~~~~I~~~~~---GlPLai~-~ia~~L~- 351 (512)
.. ....... ..+.++|++.++...++...+.. ....+ +....|++.++ |.|..+. ++.....
T Consensus 179 ~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~G~~r~~~~~l~~a~~~ 255 (387)
T 2v1u_A 179 FVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLDP---DVVPLCAALAAREHGDARRALDLLRVAGEI 255 (387)
T ss_dssp TSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBCS---SHHHHHHHHHHSSSCCHHHHHHHHHHHHHH
T ss_pred hHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCCH---HHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Confidence 21 0111111 47899999999999999887531 12222 35677888888 9994333 3322221
Q ss_pred ----c--C-CHHHHHHHHHHhcCCCCCCCCcchHHHHhHHHHHHhccchhhhhccc
Q 010355 352 ----N--K-NTFEWKSALRELTRPSSGSFSGVAAEAYKTSELSYNHLEGALKTARL 400 (512)
Q Consensus 352 ----~--~-~~~~w~~~l~~l~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~cfl 400 (512)
+ . +...+..++..+. ...+.-++..||.+.+..++
T Consensus 256 a~~~~~~~i~~~~v~~a~~~~~--------------~~~~~~~~~~l~~~~~~~l~ 297 (387)
T 2v1u_A 256 AERRREERVRREHVYSARAEIE--------------RDRVSEVVRTLPLHAKLVLL 297 (387)
T ss_dssp HHHTTCSCBCHHHHHHHHHHHH--------------HHHHHHHHHSSCHHHHHHHH
T ss_pred HHHcCCCCcCHHHHHHHHHHHh--------------hchHHHHHHcCCHHHHHHHH
Confidence 1 1 5566666665531 22355667888888876655
No 11
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.43 E-value=3.3e-12 Score=119.48 Aligned_cols=199 Identities=11% Similarity=0.129 Sum_probs=117.1
Q ss_pred ccCccccccchHHHHHHHHHhcCCC-ceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCCCHHHHHHHHHH
Q 010355 145 IKGYEAFESRMSTLNDVINALKNPD-VHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIAD 223 (512)
Q Consensus 145 ~~~~~~~~gR~~~l~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~i~~ 223 (512)
|.....|+||...++.|..++.... .+.+.|+|++|+||||||+.+++.......+.. ........ ...+..
T Consensus 19 p~~~~~~~g~~~~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~------~~~~~~~~-~~~~~~ 91 (250)
T 1njg_A 19 PQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITA------TPCGVCDN-CREIEQ 91 (250)
T ss_dssp CCSGGGCCSCHHHHHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCS------SCCSCSHH-HHHHHT
T ss_pred CccHHHHhCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCC------CCCcccHH-HHHHhc
Confidence 3445679999999999999887443 458999999999999999999987653211100 00000000 000100
Q ss_pred HhC-----CCCCCCCchHHHHHHHHHHh----CCCeEEEEEeCCCCh--hhhhhhCCC--CCCCCeEEEEEeCCcchh-c
Q 010355 224 KLG-----LKFYEESESGRARKLCERLK----KEKKILVILDDIWTN--LDLENVGIP--FGVRGCRVLMTARSQDVL-S 289 (512)
Q Consensus 224 ~l~-----~~~~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~--~~~~~l~~~--~~~~gs~iivTtR~~~v~-~ 289 (512)
... ..............+...+. .+++.+||||+++.. ..+..+... ....++.+|+||+..... .
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~~~ 171 (250)
T 1njg_A 92 GRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPV 171 (250)
T ss_dssp TCCSSEEEEETTCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGGSCH
T ss_pred cCCcceEEecCcccccHHHHHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChHhCCH
Confidence 000 00000011111222222221 246799999999642 333333111 114578888888765432 1
Q ss_pred cccCCccceecCCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChhHHHHHHHHhc
Q 010355 290 SKMDCQNNFLIGVLNESEARDLFKKLVGDKIENNDLKSLAMNIVKACRGLPIAIVTIARALR 351 (512)
Q Consensus 290 ~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~GlPLai~~ia~~L~ 351 (512)
........+.+.+++.++..+++...+...... --.+....|++.|+|+|..+..+...+.
T Consensus 172 ~l~~r~~~i~l~~l~~~e~~~~l~~~~~~~~~~-~~~~~~~~l~~~~~G~~~~~~~~~~~~~ 232 (250)
T 1njg_A 172 TILSRCLQFHLKALDVEQIRHQLEHILNEEHIA-HEPRALQLLARAAEGSLRDALSLTDQAI 232 (250)
T ss_dssp HHHTTSEEEECCCCCHHHHHHHHHHHHHHTTCC-BCHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhhhccCCCCCHHHHHHHHHHHHHhcCCC-CCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 112234689999999999999999877422111 1135678999999999999988776543
No 12
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.42 E-value=3e-12 Score=118.05 Aligned_cols=189 Identities=8% Similarity=0.074 Sum_probs=118.7
Q ss_pred cCccccccchHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHh
Q 010355 146 KGYEAFESRMSTLNDVINALKNPDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIADKL 225 (512)
Q Consensus 146 ~~~~~~~gR~~~l~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~i~~~l 225 (512)
.....|+||...+..|..++.....+.+.|+|++|+|||+||+.+++.......-...+.++.+.......+...+....
T Consensus 14 ~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (226)
T 2chg_A 14 RTLDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGIDVVRHKIKEFA 93 (226)
T ss_dssp SSGGGCCSCHHHHHHHHHHHHTTCCCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTCTTCHHHHHHHHHHHH
T ss_pred CCHHHHcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEeccccccChHHHHHHHHHHh
Confidence 44567899999999999999876666699999999999999999998764322112344455444444333322221111
Q ss_pred CCCCCCCCchHHHHHHHHHHhCCCeEEEEEeCCCCh--hhhhhhCCCC--CCCCeEEEEEeCCcchh-ccccCCccceec
Q 010355 226 GLKFYEESESGRARKLCERLKKEKKILVILDDIWTN--LDLENVGIPF--GVRGCRVLMTARSQDVL-SSKMDCQNNFLI 300 (512)
Q Consensus 226 ~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~--~~~~~l~~~~--~~~gs~iivTtR~~~v~-~~~~~~~~~~~l 300 (512)
.... +..+++.+||||+++.. .....+...+ ...++++|+||+..... .........+.+
T Consensus 94 ~~~~---------------~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~r~~~i~~ 158 (226)
T 2chg_A 94 RTAP---------------IGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRF 158 (226)
T ss_dssp TSCC---------------STTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEEC
T ss_pred cccC---------------CCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHHhCceeec
Confidence 1100 11246899999999653 2222221111 14567889888765422 111223348899
Q ss_pred CCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChhHHHHHHHHh
Q 010355 301 GVLNESEARDLFKKLVGDKIENNDLKSLAMNIVKACRGLPIAIVTIARAL 350 (512)
Q Consensus 301 ~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~GlPLai~~ia~~L 350 (512)
.+++.++...++.+.+...... --.+....|++.++|+|..+..+...+
T Consensus 159 ~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~l~~~~~g~~r~l~~~l~~~ 207 (226)
T 2chg_A 159 KPVPKEAMKKRLLEICEKEGVK-ITEDGLEALIYISGGDFRKAINALQGA 207 (226)
T ss_dssp CCCCHHHHHHHHHHHHHHHTCC-BCHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 9999999999999876421111 113567789999999999765554443
No 13
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=99.39 E-value=5.7e-13 Score=108.83 Aligned_cols=66 Identities=11% Similarity=0.109 Sum_probs=58.4
Q ss_pred chHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CcchHHHHHHHHHHHHHHHHHHHHhccccccc
Q 010355 29 NYKSNLEKLKNEVQKLRGAKESVQQKIDDAKRSG-EDIEQRVENWLITADEILDAAARIIEGTEDTT 94 (512)
Q Consensus 29 ~~~~~~~~l~~~~~~L~~~l~~i~~~l~~a~~~~-~~~~~~~~~wl~~vr~~~~d~ed~ld~~~~~~ 94 (512)
..+..+.++++++++|+.+|.+|++||.+++.+. ...++.++.|+.+||+++||+|||||+|.++.
T Consensus 16 ~E~~l~~gv~~~i~~Lk~eL~~m~a~L~da~~~~~~~~d~~vk~W~~~vrdlaYD~ED~iD~f~~~~ 82 (115)
T 3qfl_A 16 EEFKLHKGVKKNIEDLGKELESMNAALIKIGEVPREQLDSQDKLWADEVRELSYVIEDVVDKFLVQV 82 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455688999999999999999999999999873 23588999999999999999999999998765
No 14
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.29 E-value=1.1e-10 Score=117.49 Aligned_cols=199 Identities=18% Similarity=0.176 Sum_probs=132.9
Q ss_pred cccccchHHHHHHHHHhcC----CCce--EEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCCCHHHHHHHHH
Q 010355 149 EAFESRMSTLNDVINALKN----PDVH--MIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIA 222 (512)
Q Consensus 149 ~~~~gR~~~l~~l~~~L~~----~~~~--vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~i~ 222 (512)
..|+||+.+++.|..++.. .... .+.|+|++|+|||||++.+++...... -..++|++++...+...++..++
T Consensus 17 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~l~ 95 (389)
T 1fnn_A 17 KRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKT-TARFVYINGFIYRNFTAIIGEIA 95 (389)
T ss_dssp SCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSC-CCEEEEEETTTCCSHHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhc-CeeEEEEeCccCCCHHHHHHHHH
Confidence 5799999999999888863 3334 899999999999999999998875321 13567888878788899999999
Q ss_pred HHhCCCCCCC--CchHHHHHHHHHHh-CCCeEEEEEeCCCCh--hhhhhhCCCC---CC---CCeEEEEEeCCcchhccc
Q 010355 223 DKLGLKFYEE--SESGRARKLCERLK-KEKKILVILDDIWTN--LDLENVGIPF---GV---RGCRVLMTARSQDVLSSK 291 (512)
Q Consensus 223 ~~l~~~~~~~--~~~~~~~~l~~~l~-~~k~~LlVlDdv~~~--~~~~~l~~~~---~~---~gs~iivTtR~~~v~~~~ 291 (512)
..++...... ........+...+. .+++.+||||+++.. ..+..+.... .. .+..||+||+........
T Consensus 96 ~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~~l 175 (389)
T 1fnn_A 96 RSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNNL 175 (389)
T ss_dssp HHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHTS
T ss_pred HHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHHHh
Confidence 9987653322 23334445555553 356899999999653 2233321111 12 477888888876332111
Q ss_pred c----C--CccceecCCCCHHHHHHHHHHHhCC-CCCCchhHHHHHHHHHHc---------CCChhHHHHHHH
Q 010355 292 M----D--CQNNFLIGVLNESEARDLFKKLVGD-KIENNDLKSLAMNIVKAC---------RGLPIAIVTIAR 348 (512)
Q Consensus 292 ~----~--~~~~~~l~~L~~~ea~~Lf~~~~~~-~~~~~~~~~~~~~I~~~~---------~GlPLai~~ia~ 348 (512)
. . ....+.+.|++.++...++...+.. .....--.+....|++.+ +|.|..+..+..
T Consensus 176 ~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~ 248 (389)
T 1fnn_A 176 DPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILY 248 (389)
T ss_dssp CHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHH
T ss_pred CHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHH
Confidence 0 1 1236999999999999999887632 000111235778899999 788765554443
No 15
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.21 E-value=7.9e-11 Score=115.31 Aligned_cols=190 Identities=13% Similarity=0.100 Sum_probs=116.0
Q ss_pred ccCccccccchHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHH
Q 010355 145 IKGYEAFESRMSTLNDVINALKNPDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIADK 224 (512)
Q Consensus 145 ~~~~~~~~gR~~~l~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~i~~~ 224 (512)
|.....|+||+..++.|..++..+..+.+.|+|++|+|||++|+.+++..........+++++.+...+...+ +.++..
T Consensus 17 p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i-~~~~~~ 95 (323)
T 1sxj_B 17 PQVLSDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDDRGIDVV-RNQIKH 95 (323)
T ss_dssp CSSGGGCCSCTHHHHHHHHHHHSCCCCCEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTSCCSHHHH-HTHHHH
T ss_pred CCCHHHHHCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCccccChHHH-HHHHHH
Confidence 3445679999999999999998766656999999999999999999987642211122444444433332222 222221
Q ss_pred hCCCCCCCCchHHHHHHHHHHhCCCeEEEEEeCCCCh--hhhhhhCCCC--CCCCeEEEEEeCCcchh-ccccCCcccee
Q 010355 225 LGLKFYEESESGRARKLCERLKKEKKILVILDDIWTN--LDLENVGIPF--GVRGCRVLMTARSQDVL-SSKMDCQNNFL 299 (512)
Q Consensus 225 l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~--~~~~~l~~~~--~~~gs~iivTtR~~~v~-~~~~~~~~~~~ 299 (512)
+..... .+..+++.+||||+++.. ..+..+...+ +..++++|+||+..... .........+.
T Consensus 96 ~~~~~~-------------~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~sr~~~i~ 162 (323)
T 1sxj_B 96 FAQKKL-------------HLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQCAILR 162 (323)
T ss_dssp HHHBCC-------------CCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEE
T ss_pred HHhccc-------------cCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHHhhceEEe
Confidence 110000 000245899999999753 2222221111 14567888888764321 11123345899
Q ss_pred cCCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChhH-HHHHHHH
Q 010355 300 IGVLNESEARDLFKKLVGDKIENNDLKSLAMNIVKACRGLPIA-IVTIARA 349 (512)
Q Consensus 300 l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~GlPLa-i~~ia~~ 349 (512)
+.+++.++...++...+...... --.+....|++.|+|.|.. +..+...
T Consensus 163 ~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~l~~~~~G~~r~a~~~l~~~ 212 (323)
T 1sxj_B 163 YSKLSDEDVLKRLLQIIKLEDVK-YTNDGLEAIIFTAEGDMRQAINNLQST 212 (323)
T ss_dssp CCCCCHHHHHHHHHHHHHHHTCC-BCHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ecCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 99999999999998876321111 1135678899999999954 4444433
No 16
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.09 E-value=3.2e-10 Score=111.14 Aligned_cols=189 Identities=10% Similarity=0.072 Sum_probs=115.0
Q ss_pred ccCccccccchHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHH
Q 010355 145 IKGYEAFESRMSTLNDVINALKNPDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIADK 224 (512)
Q Consensus 145 ~~~~~~~~gR~~~l~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~i~~~ 224 (512)
|.....++|++..+..|..++..+..+.+.|+|++|+||||+|+.+++.......-...+.+..+....... ++..+..
T Consensus 21 p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 99 (327)
T 1iqp_A 21 PQRLDDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASDERGINV-IREKVKE 99 (327)
T ss_dssp CCSTTTCCSCHHHHHHHHHHHHHTCCCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTCHHHHHT-THHHHHH
T ss_pred CCCHHHhhCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeeccccCchHH-HHHHHHH
Confidence 344567899999999999998876666699999999999999999998754211111233444332111111 1111100
Q ss_pred hCCCCCCCCchHHHHHHHHH--HhCCCeEEEEEeCCCCh--hhhhhhCCCC--CCCCeEEEEEeCCcchh-ccccCCccc
Q 010355 225 LGLKFYEESESGRARKLCER--LKKEKKILVILDDIWTN--LDLENVGIPF--GVRGCRVLMTARSQDVL-SSKMDCQNN 297 (512)
Q Consensus 225 l~~~~~~~~~~~~~~~l~~~--l~~~k~~LlVlDdv~~~--~~~~~l~~~~--~~~gs~iivTtR~~~v~-~~~~~~~~~ 297 (512)
.... +..+++.+||+|+++.. .....+...+ ...++++|+||...... .........
T Consensus 100 ----------------~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~~ 163 (327)
T 1iqp_A 100 ----------------FARTKPIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAI 163 (327)
T ss_dssp ----------------HHHSCCGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHTEEE
T ss_pred ----------------HHhhCCcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHHhhCcE
Confidence 0000 11146789999999753 2233221111 14568888888765421 111122347
Q ss_pred eecCCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChhHHHHHHHHhc
Q 010355 298 FLIGVLNESEARDLFKKLVGDKIENNDLKSLAMNIVKACRGLPIAIVTIARALR 351 (512)
Q Consensus 298 ~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~GlPLai~~ia~~L~ 351 (512)
+.+.+++.++...++...+...... --.+....|++.++|.|..+..+...+.
T Consensus 164 ~~~~~l~~~~~~~~l~~~~~~~~~~-~~~~~~~~l~~~~~g~~r~~~~~l~~~~ 216 (327)
T 1iqp_A 164 FRFRPLRDEDIAKRLRYIAENEGLE-LTEEGLQAILYIAEGDMRRAINILQAAA 216 (327)
T ss_dssp EECCCCCHHHHHHHHHHHHHTTTCE-ECHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred EEecCCCHHHHHHHHHHHHHhcCCC-CCHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 8999999999999998876432211 1235678899999999997665544443
No 17
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.04 E-value=5.3e-09 Score=102.37 Aligned_cols=176 Identities=13% Similarity=0.094 Sum_probs=109.3
Q ss_pred cCccccccchHHHHHHHHHhc-----CCCceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCCCHHHHHHH
Q 010355 146 KGYEAFESRMSTLNDVINALK-----NPDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQ 220 (512)
Q Consensus 146 ~~~~~~~gR~~~l~~l~~~L~-----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~ 220 (512)
.....|+|+...+..+..++. ....+.+.|+|++|+|||+||+.+++.... ..++++.+.......+..
T Consensus 9 ~~~~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~~~-----~~~~~~~~~~~~~~~l~~- 82 (324)
T 1hqc_A 9 KTLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGV-----NLRVTSGPAIEKPGDLAA- 82 (324)
T ss_dssp CSTTTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHHTC-----CEEEECTTTCCSHHHHHH-
T ss_pred ccHHHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHhCC-----CEEEEeccccCChHHHHH-
Confidence 345679999998888887765 234467899999999999999999987641 234454433323222221
Q ss_pred HHHHhCCCCCCCCchHHHHHHHHHHhC--CCeEEEEEeCCCChh--hhhhh-------C--CCC-----------CCCCe
Q 010355 221 IADKLGLKFYEESESGRARKLCERLKK--EKKILVILDDIWTNL--DLENV-------G--IPF-----------GVRGC 276 (512)
Q Consensus 221 i~~~l~~~~~~~~~~~~~~~l~~~l~~--~k~~LlVlDdv~~~~--~~~~l-------~--~~~-----------~~~gs 276 (512)
.+.. .++.+|+||++.... ....+ . ... ..++.
T Consensus 83 -----------------------~l~~~~~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~ 139 (324)
T 1hqc_A 83 -----------------------ILANSLEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRF 139 (324)
T ss_dssp -----------------------HHTTTCCTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCC
T ss_pred -----------------------HHHHhccCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCE
Confidence 1111 356788999986532 11111 0 000 01245
Q ss_pred EEEEEeCCcchh-ccccCCc-cceecCCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChhHHHHHHHHhc
Q 010355 277 RVLMTARSQDVL-SSKMDCQ-NNFLIGVLNESEARDLFKKLVGDKIENNDLKSLAMNIVKACRGLPIAIVTIARALR 351 (512)
Q Consensus 277 ~iivTtR~~~v~-~~~~~~~-~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~GlPLai~~ia~~L~ 351 (512)
++|.||...... ....... ..+.+.+++.++...++.+.+...... --.+....|++.|+|+|..+..+...+.
T Consensus 140 ~~i~~t~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~-~~~~~~~~l~~~~~G~~r~l~~~l~~~~ 215 (324)
T 1hqc_A 140 TLIGATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGVR-ITEEAALEIGRRSRGTMRVAKRLFRRVR 215 (324)
T ss_dssp EEEEEESCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTTCC-CCHHHHHHHHHHSCSCHHHHHHHHHHHT
T ss_pred EEEEeCCCcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcCCC-CCHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 677777654322 1112222 578999999999999998877422211 1135678899999999988877666553
No 18
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.01 E-value=1e-08 Score=98.95 Aligned_cols=168 Identities=7% Similarity=0.061 Sum_probs=106.8
Q ss_pred ccccchHHHHHHHHHhc----CCCceEEEEEcCCCCcHHHHHHHHHHhhhhcCC---C--CeEEEEEeCCCCCHHHHHHH
Q 010355 150 AFESRMSTLNDVINALK----NPDVHMIGAYGMAGVGKTMLVKEVARQAKADKL---F--DEVVYAEVSQRPDVKKIQGQ 220 (512)
Q Consensus 150 ~~~gR~~~l~~l~~~L~----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~---f--~~~~wv~~~~~~~~~~ll~~ 220 (512)
.+.||++++..|...|. ....+.+.|+|++|+|||++++.+++....... . -.++++++....+...++..
T Consensus 21 ~L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~ 100 (318)
T 3te6_A 21 LLKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEK 100 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHH
Confidence 47899999999887765 567788999999999999999999998754211 1 13567777777888999999
Q ss_pred HHHHhCCCC-CCCCchHHHHHHHHHH--hCCCeEEEEEeCCCChhh---hhhh-CCC-CCCCCeEEEEEeCCcchhc---
Q 010355 221 IADKLGLKF-YEESESGRARKLCERL--KKEKKILVILDDIWTNLD---LENV-GIP-FGVRGCRVLMTARSQDVLS--- 289 (512)
Q Consensus 221 i~~~l~~~~-~~~~~~~~~~~l~~~l--~~~k~~LlVlDdv~~~~~---~~~l-~~~-~~~~gs~iivTtR~~~v~~--- 289 (512)
|++++.... ........+..++..+ ..+++++|+||.++.... +-.+ ..+ .......||.++.......
T Consensus 101 I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~~q~~L~~l~~~~~~~~s~~~vI~i~n~~d~~~~~L 180 (318)
T 3te6_A 101 IWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLLSEKILQYFEKWISSKNSKLSIICVGGHNVTIREQI 180 (318)
T ss_dssp HHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSCCTHHHHHHHHHHHCSSCCEEEEEECCSSCCCHHHH
T ss_pred HHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhhcchHHHHHHhcccccCCcEEEEEEecCcccchhhc
Confidence 999985432 1122233445555554 235789999999975431 1111 111 1122233444444332211
Q ss_pred --ccc--CCccceecCCCCHHHHHHHHHHHhC
Q 010355 290 --SKM--DCQNNFLIGVLNESEARDLFKKLVG 317 (512)
Q Consensus 290 --~~~--~~~~~~~l~~L~~~ea~~Lf~~~~~ 317 (512)
... -....+.+.|++.++-..++.+++.
T Consensus 181 ~~~v~SR~~~~~i~F~pYt~~el~~Il~~Rl~ 212 (318)
T 3te6_A 181 NIMPSLKAHFTEIKLNKVDKNELQQMIITRLK 212 (318)
T ss_dssp HTCHHHHTTEEEEECCCCCHHHHHHHHHHHHH
T ss_pred chhhhccCCceEEEeCCCCHHHHHHHHHHHHH
Confidence 000 1124689999999999999988763
No 19
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.99 E-value=3.8e-09 Score=103.02 Aligned_cols=187 Identities=9% Similarity=0.080 Sum_probs=114.6
Q ss_pred ccCccccccchHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCCCH---HHHHHHH
Q 010355 145 IKGYEAFESRMSTLNDVINALKNPDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDV---KKIQGQI 221 (512)
Q Consensus 145 ~~~~~~~~gR~~~l~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~---~~ll~~i 221 (512)
|.....++|+...+..|..++..+..+.+.|+|++|+|||++|+.+++.......-...+.++.+..... ...+..+
T Consensus 13 p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (319)
T 2chq_A 13 PRTLDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGIDVVRHKIKEF 92 (319)
T ss_dssp CSSGGGSCSCHHHHHHHHTTTTTTCCCCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETTSTTCTTTSSHHHHHH
T ss_pred CCCHHHHhCCHHHHHHHHHHHhCCCCCeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeCccccChHHHHHHHHHH
Confidence 3445678999999999999888766666999999999999999999987532111112233444332111 1111111
Q ss_pred HHHhCCCCCCCCchHHHHHHHHHHhCCCeEEEEEeCCCCh--hhhhhhCCCCC--CCCeEEEEEeCCcchh-ccccCCcc
Q 010355 222 ADKLGLKFYEESESGRARKLCERLKKEKKILVILDDIWTN--LDLENVGIPFG--VRGCRVLMTARSQDVL-SSKMDCQN 296 (512)
Q Consensus 222 ~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~--~~~~~l~~~~~--~~gs~iivTtR~~~v~-~~~~~~~~ 296 (512)
.... .+..+++.+||||++... .....+...+. ..++++|+||...... ........
T Consensus 93 ~~~~------------------~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~ 154 (319)
T 2chq_A 93 ARTA------------------PIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCA 154 (319)
T ss_dssp HHSC------------------CSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHHHTTCE
T ss_pred HhcC------------------CCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHHHhhCe
Confidence 1000 011246789999999643 22333321111 4567888888665421 11123345
Q ss_pred ceecCCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChhHHHHHHHHh
Q 010355 297 NFLIGVLNESEARDLFKKLVGDKIENNDLKSLAMNIVKACRGLPIAIVTIARAL 350 (512)
Q Consensus 297 ~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~GlPLai~~ia~~L 350 (512)
.+.+.+++.++...++...+...... --.+....|+..++|.|..+..+...+
T Consensus 155 ~i~~~~~~~~~~~~~l~~~~~~~~~~-i~~~~l~~l~~~~~G~~r~~~~~l~~~ 207 (319)
T 2chq_A 155 VFRFKPVPKEAMKKRLLEICEKEGVK-ITEDGLEALIYISGGDFRKAINALQGA 207 (319)
T ss_dssp EEECCCCCHHHHHHHHHHHHHTTCCC-BCHHHHHHHHHTTTTCHHHHHHHHHHH
T ss_pred EEEecCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 89999999999999998877432221 113567789999999998765544433
No 20
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.89 E-value=2e-08 Score=100.30 Aligned_cols=195 Identities=12% Similarity=0.136 Sum_probs=111.5
Q ss_pred CccccccchHHHHHHHHHhcCCC-ceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHh
Q 010355 147 GYEAFESRMSTLNDVINALKNPD-VHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIADKL 225 (512)
Q Consensus 147 ~~~~~~gR~~~l~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~i~~~l 225 (512)
....++||+..++.|..++..+. .+.+.|+|++|+||||+|+.+++.......+.. ..+........+....
T Consensus 14 ~~~~~vg~~~~~~~L~~~l~~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~-------~~~~~~~~~~~~~~~~ 86 (373)
T 1jr3_A 14 TFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITA-------TPCGVCDNCREIEQGR 86 (373)
T ss_dssp STTTSCSCHHHHHHHHHHHHHTCCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCS-------SCCSSSHHHHHHHTSC
T ss_pred chhhccCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCC-------CCCcccHHHHHHhccC
Confidence 44568999999999999887543 467899999999999999999987643211100 0000000011111000
Q ss_pred C-----CCCCCCCchHHHHHHHHHHh----CCCeEEEEEeCCCCh--hhhhhhCC--CCCCCCeEEEEEeCCcchh-ccc
Q 010355 226 G-----LKFYEESESGRARKLCERLK----KEKKILVILDDIWTN--LDLENVGI--PFGVRGCRVLMTARSQDVL-SSK 291 (512)
Q Consensus 226 ~-----~~~~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~--~~~~~l~~--~~~~~gs~iivTtR~~~v~-~~~ 291 (512)
. ..............+...+. .+++.+||||++... ..+..+.. .....++.+|++|....-. ...
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l 166 (373)
T 1jr3_A 87 FVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTI 166 (373)
T ss_dssp CSSCEEEETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGGGSCHHH
T ss_pred CCceEEecccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChHhCcHHH
Confidence 0 00000001111233333332 246789999999643 22222211 1113467777777654321 112
Q ss_pred cCCccceecCCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChhHHHHHHHH
Q 010355 292 MDCQNNFLIGVLNESEARDLFKKLVGDKIENNDLKSLAMNIVKACRGLPIAIVTIARA 349 (512)
Q Consensus 292 ~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~GlPLai~~ia~~ 349 (512)
......+.+.+++.++...++.+.+...... --.+....|++.++|.|..+..+...
T Consensus 167 ~sr~~~i~~~~l~~~~~~~~l~~~~~~~~~~-~~~~a~~~l~~~~~G~~r~~~~~l~~ 223 (373)
T 1jr3_A 167 LSRCLQFHLKALDVEQIRHQLEHILNEEHIA-HEPRALQLLARAAEGSLRDALSLTDQ 223 (373)
T ss_dssp HTTSEEEECCCCCHHHHHHHHHHHHHHHTCC-BCHHHHHHHHHHSSSCHHHHHHHHHH
T ss_pred HhheeEeeCCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 2334689999999999999998776321111 11346778999999999988766543
No 21
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.87 E-value=1.8e-09 Score=96.73 Aligned_cols=153 Identities=14% Similarity=0.194 Sum_probs=87.8
Q ss_pred CccccccchHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHhhhhcC-----CCCeEEEEEeCCCCCHHHHHHHH
Q 010355 147 GYEAFESRMSTLNDVINALKNPDVHMIGAYGMAGVGKTMLVKEVARQAKADK-----LFDEVVYAEVSQRPDVKKIQGQI 221 (512)
Q Consensus 147 ~~~~~~gR~~~l~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-----~f~~~~wv~~~~~~~~~~ll~~i 221 (512)
....|+||+..+..+..++.....+.+.|+|++|+|||+||+.+++...... ....+++++++. +.
T Consensus 20 ~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~--- 90 (195)
T 1jbk_A 20 KLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGA------LV--- 90 (195)
T ss_dssp CSCCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHH------HH---
T ss_pred cccccccchHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeHHH------Hh---
Confidence 4556899999999999999877677889999999999999999998764311 112344443321 10
Q ss_pred HHHhCCCCCCCCchHHHHHHHHHH-hCCCeEEEEEeCCCChh---------h-hhhhCCCCCCCCeEEEEEeCCcchh--
Q 010355 222 ADKLGLKFYEESESGRARKLCERL-KKEKKILVILDDIWTNL---------D-LENVGIPFGVRGCRVLMTARSQDVL-- 288 (512)
Q Consensus 222 ~~~l~~~~~~~~~~~~~~~l~~~l-~~~k~~LlVlDdv~~~~---------~-~~~l~~~~~~~gs~iivTtR~~~v~-- 288 (512)
. +.. ...........+...+ ..+++.+||||++.... . ...+.......+..+|+||......
T Consensus 91 -~--~~~-~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~ 166 (195)
T 1jbk_A 91 -A--GAK-YRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALARGELHCVGATTLDEYRQY 166 (195)
T ss_dssp -T--TTC-SHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT------CCCCHHHHHHHHHTTSCCEEEEECHHHHHHH
T ss_pred -c--cCC-ccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCcccchHHHHHHHHHhhccCCeEEEEeCCHHHHHHH
Confidence 0 000 0000111222333333 24568899999996542 1 1111111113345677777654311
Q ss_pred ----ccccCCccceecCCCCHHHHHHHH
Q 010355 289 ----SSKMDCQNNFLIGVLNESEARDLF 312 (512)
Q Consensus 289 ----~~~~~~~~~~~l~~L~~~ea~~Lf 312 (512)
.........+.+.+++.++..+++
T Consensus 167 ~~~~~~l~~r~~~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 167 IEKDAALERRFQKVFVAEPSVEDTIAIL 194 (195)
T ss_dssp TTTCHHHHTTEEEEECCCCCHHHHHTTC
T ss_pred HhcCHHHHHHhceeecCCCCHHHHHHHh
Confidence 111222336888888888776553
No 22
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.80 E-value=7.1e-08 Score=98.23 Aligned_cols=182 Identities=13% Similarity=0.154 Sum_probs=107.5
Q ss_pred ccCccccccchHHH---HHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCCCHHHHHHHH
Q 010355 145 IKGYEAFESRMSTL---NDVINALKNPDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQI 221 (512)
Q Consensus 145 ~~~~~~~~gR~~~l---~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~i 221 (512)
|.....++|....+ ..|...+.....+.+.|+|++|+||||||+.+++.... .| +.++.. ......+ +.+
T Consensus 22 P~~l~~ivGq~~~~~~~~~L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~~~--~f---~~l~a~-~~~~~~i-r~~ 94 (447)
T 3pvs_A 22 PENLAQYIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYANA--DV---ERISAV-TSGVKEI-REA 94 (447)
T ss_dssp CCSTTTCCSCHHHHSTTSHHHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHTTC--EE---EEEETT-TCCHHHH-HHH
T ss_pred CCCHHHhCCcHHHHhchHHHHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHhCC--Ce---EEEEec-cCCHHHH-HHH
Confidence 34566789998888 67777777777788999999999999999999987642 12 222221 1222222 222
Q ss_pred HHHhCCCCCCCCchHHHHHHHHHHhCCCeEEEEEeCCCChh--hhhhhCCCCCCCCeEEEEEe-CCcc--hhccccCCcc
Q 010355 222 ADKLGLKFYEESESGRARKLCERLKKEKKILVILDDIWTNL--DLENVGIPFGVRGCRVLMTA-RSQD--VLSSKMDCQN 296 (512)
Q Consensus 222 ~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~--~~~~l~~~~~~~gs~iivTt-R~~~--v~~~~~~~~~ 296 (512)
+ .........+++.+|+||++.... ....+...+......+|.+| .+.. +.........
T Consensus 95 ~----------------~~a~~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~~~v~lI~att~n~~~~l~~aL~sR~~ 158 (447)
T 3pvs_A 95 I----------------ERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTITFIGATTENPSFELNSALLSRAR 158 (447)
T ss_dssp H----------------HHHHHHHHTTCCEEEEEETTTCC------CCHHHHHTTSCEEEEEESSCGGGSSCHHHHTTEE
T ss_pred H----------------HHHHHhhhcCCCcEEEEeChhhhCHHHHHHHHHHHhcCceEEEecCCCCcccccCHHHhCcee
Confidence 1 111112223578999999997542 22222111112234444444 4432 1111223445
Q ss_pred ceecCCCCHHHHHHHHHHHhCCC------CCCchhHHHHHHHHHHcCCChhHHHHHHHH
Q 010355 297 NFLIGVLNESEARDLFKKLVGDK------IENNDLKSLAMNIVKACRGLPIAIVTIARA 349 (512)
Q Consensus 297 ~~~l~~L~~~ea~~Lf~~~~~~~------~~~~~~~~~~~~I~~~~~GlPLai~~ia~~ 349 (512)
++.+.+++.++...++.+.+... ....--.+....|++.++|.+-.+..+...
T Consensus 159 v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~lln~Le~ 217 (447)
T 3pvs_A 159 VYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNTLEM 217 (447)
T ss_dssp EEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHHHHHHH
T ss_pred EEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 88899999999999998876421 111112456778888999988766554443
No 23
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.75 E-value=6.5e-07 Score=84.49 Aligned_cols=181 Identities=18% Similarity=0.189 Sum_probs=99.9
Q ss_pred ccccccchHHHHHHHHHh---cC---------CCceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCCCHH
Q 010355 148 YEAFESRMSTLNDVINAL---KN---------PDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVK 215 (512)
Q Consensus 148 ~~~~~gR~~~l~~l~~~L---~~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 215 (512)
...++|.+..++.|.+++ .. ...+.+.|+|++|+|||+||+.+++.... ..+.++.+.-...
T Consensus 5 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~-----~~~~~~~~~~~~~- 78 (262)
T 2qz4_A 5 FKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQV-----PFLAMAGAEFVEV- 78 (262)
T ss_dssp TTSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTC-----CEEEEETTTTSSS-
T ss_pred HHHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCC-----CEEEechHHHHhh-
Confidence 445778877666665443 21 23467889999999999999999987642 2334444332110
Q ss_pred HHHHHHHHHhCCCCCCCCchHHHHHHHHHHhCCCeEEEEEeCCCChh-----------------hhhhh----CCCCCCC
Q 010355 216 KIQGQIADKLGLKFYEESESGRARKLCERLKKEKKILVILDDIWTNL-----------------DLENV----GIPFGVR 274 (512)
Q Consensus 216 ~ll~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~-----------------~~~~l----~~~~~~~ 274 (512)
...........+........+.+|+||++.... .+..+ .......
T Consensus 79 --------------~~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~ 144 (262)
T 2qz4_A 79 --------------IGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTD 144 (262)
T ss_dssp --------------STTHHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTC
T ss_pred --------------ccChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCC
Confidence 000111223334444444468999999997531 11111 1111134
Q ss_pred CeEEEEEeCCcchhc-ccc---CCccceecCCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChh-HHHHHHH
Q 010355 275 GCRVLMTARSQDVLS-SKM---DCQNNFLIGVLNESEARDLFKKLVGDKIENNDLKSLAMNIVKACRGLPI-AIVTIAR 348 (512)
Q Consensus 275 gs~iivTtR~~~v~~-~~~---~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~GlPL-ai~~ia~ 348 (512)
+..||.||....... ... .....+.+.+.+.++..+++...+...............|++.+.|.+- .|..+..
T Consensus 145 ~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~l~~l~~ 223 (262)
T 2qz4_A 145 HVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIANICN 223 (262)
T ss_dssp CEEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCCBTHHHHHHHHHHTCTTCCHHHHHHHHH
T ss_pred CEEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHCCCCCHHHHHHHHH
Confidence 567777776544221 111 1225678889999999999988774322222222234678888888754 4544443
No 24
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.73 E-value=1.6e-08 Score=94.23 Aligned_cols=175 Identities=11% Similarity=0.110 Sum_probs=104.4
Q ss_pred Cccccccc---hHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCCCHHHHHHHHHH
Q 010355 147 GYEAFESR---MSTLNDVINALKNPDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIAD 223 (512)
Q Consensus 147 ~~~~~~gR---~~~l~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~i~~ 223 (512)
....|+|+ ...+..+..++.....+.+.|+|++|+||||||+.+++..... ...++|++++..... +.
T Consensus 26 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~la~~l~~~~~~~--~~~~~~~~~~~~~~~------~~- 96 (242)
T 3bos_A 26 TFTSYYPAAGNDELIGALKSAASGDGVQAIYLWGPVKSGRTHLIHAACARANEL--ERRSFYIPLGIHASI------ST- 96 (242)
T ss_dssp STTTSCC--CCHHHHHHHHHHHHTCSCSEEEEECSTTSSHHHHHHHHHHHHHHT--TCCEEEEEGGGGGGS------CG-
T ss_pred ChhhccCCCCCHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEEEHHHHHHH------HH-
Confidence 34556663 3556666666665567889999999999999999999887643 345667765432110 00
Q ss_pred HhCCCCCCCCchHHHHHHHHHHhCCCeEEEEEeCCCChhh----hhhhCCCC---CCCC-eEEEEEeCCcchh-----cc
Q 010355 224 KLGLKFYEESESGRARKLCERLKKEKKILVILDDIWTNLD----LENVGIPF---GVRG-CRVLMTARSQDVL-----SS 290 (512)
Q Consensus 224 ~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~----~~~l~~~~---~~~g-s~iivTtR~~~v~-----~~ 290 (512)
.....+ .++.+||||+++.... ...+...+ ...+ .++|+||+...-. ..
T Consensus 97 ----------------~~~~~~--~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~~~~~ 158 (242)
T 3bos_A 97 ----------------ALLEGL--EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGFVLPD 158 (242)
T ss_dssp ----------------GGGTTG--GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTCCCHH
T ss_pred ----------------HHHHhc--cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHhhhh
Confidence 000111 2467999999864321 11111100 1122 2478887754310 00
Q ss_pred cc---CCccceecCCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChhHHHHHHHH
Q 010355 291 KM---DCQNNFLIGVLNESEARDLFKKLVGDKIENNDLKSLAMNIVKACRGLPIAIVTIARA 349 (512)
Q Consensus 291 ~~---~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~GlPLai~~ia~~ 349 (512)
.. .....+.+.+++.++..+++.+.+..... .-..+....|++.++|.+..+..+...
T Consensus 159 l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~l~~~~~g~~r~l~~~l~~ 219 (242)
T 3bos_A 159 LVSRMHWGLTYQLQPMMDDEKLAALQRRAAMRGL-QLPEDVGRFLLNRMARDLRTLFDVLDR 219 (242)
T ss_dssp HHHHHHHSEEEECCCCCGGGHHHHHHHHHHHTTC-CCCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred hhhHhhcCceEEeCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHccCCHHHHHHHHHH
Confidence 11 11267899999999999999987642111 111356778999999998777655443
No 25
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.73 E-value=2.7e-07 Score=88.35 Aligned_cols=180 Identities=16% Similarity=0.186 Sum_probs=106.0
Q ss_pred cCccccccchHHHHHHHHHhcC-------------CCceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCC
Q 010355 146 KGYEAFESRMSTLNDVINALKN-------------PDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRP 212 (512)
Q Consensus 146 ~~~~~~~gR~~~l~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~ 212 (512)
.....++|.+..++.|...+.. ...+.+.|+|++|+|||+||+.+++.... ..+.+..+.-.
T Consensus 14 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~-----~~~~v~~~~~~ 88 (285)
T 3h4m_A 14 VRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNA-----TFIRVVGSELV 88 (285)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTC-----EEEEEEGGGGC
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCC-----CEEEEehHHHH
Confidence 3456788999999888877641 34567999999999999999999987642 12333322111
Q ss_pred CHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHhCCCeEEEEEeCCCChh----------------hhhhh----CCCCC
Q 010355 213 DVKKIQGQIADKLGLKFYEESESGRARKLCERLKKEKKILVILDDIWTNL----------------DLENV----GIPFG 272 (512)
Q Consensus 213 ~~~~ll~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~----------------~~~~l----~~~~~ 272 (512)
. . ...........+.......++.+|+||++.... .+..+ .....
T Consensus 89 ~--------------~-~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~ 153 (285)
T 3h4m_A 89 K--------------K-FIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDA 153 (285)
T ss_dssp C--------------C-STTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCS
T ss_pred H--------------h-ccchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCC
Confidence 0 0 000111223344444444567999999995431 11111 11112
Q ss_pred CCCeEEEEEeCCcchhcc-cc---CCccceecCCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCC-ChhHHHHHH
Q 010355 273 VRGCRVLMTARSQDVLSS-KM---DCQNNFLIGVLNESEARDLFKKLVGDKIENNDLKSLAMNIVKACRG-LPIAIVTIA 347 (512)
Q Consensus 273 ~~gs~iivTtR~~~v~~~-~~---~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~G-lPLai~~ia 347 (512)
..+..||.||........ .. .....+.+.+.+.++..++|...+........ .....|+..+.| .|-.|..+.
T Consensus 154 ~~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~--~~~~~l~~~~~g~~~~~i~~l~ 231 (285)
T 3h4m_A 154 RGDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAED--VNLEEIAKMTEGCVGAELKAIC 231 (285)
T ss_dssp SSSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCTT--CCHHHHHHHCTTCCHHHHHHHH
T ss_pred CCCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCCc--CCHHHHHHHcCCCCHHHHHHHH
Confidence 346778888875533210 01 12247899999999999999988753322111 124567788877 454555443
No 26
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.70 E-value=9e-08 Score=99.74 Aligned_cols=191 Identities=10% Similarity=0.074 Sum_probs=108.5
Q ss_pred ccCccccccchHHHHHHHHHhcC-----------------CCceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEE
Q 010355 145 IKGYEAFESRMSTLNDVINALKN-----------------PDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAE 207 (512)
Q Consensus 145 ~~~~~~~~gR~~~l~~l~~~L~~-----------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~ 207 (512)
|.....++|++..++.|..|+.. ...+.+.|+|++|+|||+||+.+++... + .++.++
T Consensus 35 P~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~----~-~~i~in 109 (516)
T 1sxj_A 35 PTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELG----Y-DILEQN 109 (516)
T ss_dssp CSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTT----C-EEEEEC
T ss_pred CCCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcC----C-CEEEEe
Confidence 44567799999999999999874 1347899999999999999999998763 1 244555
Q ss_pred eCCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHH-HhCCCeEEEEEeCCCChhh-----hhhhCCCCCCCCeEEEEE
Q 010355 208 VSQRPDVKKIQGQIADKLGLKFYEESESGRARKLCER-LKKEKKILVILDDIWTNLD-----LENVGIPFGVRGCRVLMT 281 (512)
Q Consensus 208 ~~~~~~~~~ll~~i~~~l~~~~~~~~~~~~~~~l~~~-l~~~k~~LlVlDdv~~~~~-----~~~l~~~~~~~gs~iivT 281 (512)
++...... ++...+........... ........ ...+++.+||||++..... +..+.......+..||++
T Consensus 110 ~s~~~~~~-~~~~~i~~~~~~~~~~~---~~~~~~~~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~~~~~~iIli 185 (516)
T 1sxj_A 110 ASDVRSKT-LLNAGVKNALDNMSVVG---YFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRKTSTPLILI 185 (516)
T ss_dssp TTSCCCHH-HHHHTGGGGTTBCCSTT---TTTC----CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHHCSSCEEEE
T ss_pred CCCcchHH-HHHHHHHHHhccccHHH---HHhhhhhhhhccCCCeEEEEECCCccchhhHHHHHHHHHHHHhcCCCEEEE
Confidence 55444433 33332222111000000 00000000 1235789999999964311 122211111223446665
Q ss_pred eCCcch--hccccCCccceecCCCCHHHHHHHHHHHhC--CCCCCchhHHHHHHHHHHcCCCh-hHHHHHH
Q 010355 282 ARSQDV--LSSKMDCQNNFLIGVLNESEARDLFKKLVG--DKIENNDLKSLAMNIVKACRGLP-IAIVTIA 347 (512)
Q Consensus 282 tR~~~v--~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~--~~~~~~~~~~~~~~I~~~~~GlP-Lai~~ia 347 (512)
+..... ..........+.+.+++.++...++...+. .....+ +....|++.++|.+ .++..+.
T Consensus 186 ~~~~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~~---~~l~~la~~s~GdiR~~i~~L~ 253 (516)
T 1sxj_A 186 CNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFKLDP---NVIDRLIQTTRGDIRQVINLLS 253 (516)
T ss_dssp ESCTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTCCCCT---THHHHHHHHTTTCHHHHHHHHT
T ss_pred EcCCCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHcCCcHHHHHHHHH
Confidence 544321 111223345789999999999999887663 111222 35678899999954 4455443
No 27
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.69 E-value=1.2e-07 Score=93.84 Aligned_cols=197 Identities=13% Similarity=0.123 Sum_probs=112.6
Q ss_pred ccCccccccchHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHhhhhcCCC-CeEEEEEeCCCCCHHHHHHHHHH
Q 010355 145 IKGYEAFESRMSTLNDVINALKNPDVHMIGAYGMAGVGKTMLVKEVARQAKADKLF-DEVVYAEVSQRPDVKKIQGQIAD 223 (512)
Q Consensus 145 ~~~~~~~~gR~~~l~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f-~~~~wv~~~~~~~~~~ll~~i~~ 223 (512)
|.....++|++..++.|..++.....+.+.|+|++|+||||||+.+++.......+ ..++.++.+.......+ ...+.
T Consensus 33 p~~~~~i~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 111 (353)
T 1sxj_D 33 PKNLDEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGISIV-REKVK 111 (353)
T ss_dssp CSSTTTCCSCCTTHHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCCHHHH-TTHHH
T ss_pred CCCHHHhhCCHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccccccchHHH-HHHHH
Confidence 34456789999999999999987655558999999999999999999875421111 12333444433333222 22211
Q ss_pred HhC-CCCCCCCchHHHHHHHHHHhCCCeEEEEEeCCCCh--hhhhhhCCCC--CCCCeEEEEEeCCcchh-ccccCCccc
Q 010355 224 KLG-LKFYEESESGRARKLCERLKKEKKILVILDDIWTN--LDLENVGIPF--GVRGCRVLMTARSQDVL-SSKMDCQNN 297 (512)
Q Consensus 224 ~l~-~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~--~~~~~l~~~~--~~~gs~iivTtR~~~v~-~~~~~~~~~ 297 (512)
.+. ......... .......+++-+|++|++... .....+...+ .....++|++|...... .........
T Consensus 112 ~~~~~~~~~~~~~-----~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~sR~~~ 186 (353)
T 1sxj_D 112 NFARLTVSKPSKH-----DLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQCSK 186 (353)
T ss_dssp HHHHSCCCCCCTT-----HHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHHSEE
T ss_pred HHhhhcccccchh-----hcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhhccCce
Confidence 110 000000000 000111235679999998643 2222221100 13456777777554321 111122347
Q ss_pred eecCCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChhHHHHHHH
Q 010355 298 FLIGVLNESEARDLFKKLVGDKIENNDLKSLAMNIVKACRGLPIAIVTIAR 348 (512)
Q Consensus 298 ~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~GlPLai~~ia~ 348 (512)
+.+.+++.++...++...+...... --.+....|++.++|.|..+..+..
T Consensus 187 i~~~~~~~~~~~~~l~~~~~~~~~~-i~~~~l~~l~~~~~G~~r~~~~~l~ 236 (353)
T 1sxj_D 187 FRFKALDASNAIDRLRFISEQENVK-CDDGVLERILDISAGDLRRGITLLQ 236 (353)
T ss_dssp EECCCCCHHHHHHHHHHHHHTTTCC-CCHHHHHHHHHHTSSCHHHHHHHHH
T ss_pred EEeCCCCHHHHHHHHHHHHHHhCCC-CCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 8999999999999998876422111 1135778999999999987554433
No 28
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=98.63 E-value=3.5e-06 Score=82.07 Aligned_cols=183 Identities=17% Similarity=0.176 Sum_probs=106.2
Q ss_pred cCccccccchHHHHHHHHHhc------------CCCceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCCC
Q 010355 146 KGYEAFESRMSTLNDVINALK------------NPDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPD 213 (512)
Q Consensus 146 ~~~~~~~gR~~~l~~l~~~L~------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~ 213 (512)
.....+.|.+..++.|.+.+. ....+.|.|+|++|+|||+||+.+++.... ...+.++.+.-.+
T Consensus 9 ~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~----~~~~~i~~~~l~~ 84 (322)
T 1xwi_A 9 VKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANN----STFFSISSSDLVS 84 (322)
T ss_dssp CCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTTS----CEEEEEECCSSCC
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcCC----CcEEEEEhHHHHh
Confidence 345567888877777766542 123468999999999999999999987621 1223344332110
Q ss_pred HHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHhCCCeEEEEEeCCCChhh-----------------hhhhC-CCCCCCC
Q 010355 214 VKKIQGQIADKLGLKFYEESESGRARKLCERLKKEKKILVILDDIWTNLD-----------------LENVG-IPFGVRG 275 (512)
Q Consensus 214 ~~~ll~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~-----------------~~~l~-~~~~~~g 275 (512)
. ...........++......++.+|+||++..... +..+. ......+
T Consensus 85 --------------~-~~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~ 149 (322)
T 1xwi_A 85 --------------K-WLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDG 149 (322)
T ss_dssp --------------S-SCCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTT
T ss_pred --------------h-hhhHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCC
Confidence 0 0011223344455555445789999999965410 11111 1111345
Q ss_pred eEEEEEeCCcchhc-cc-cCCccceecCCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCC-hhHHHHHHH
Q 010355 276 CRVLMTARSQDVLS-SK-MDCQNNFLIGVLNESEARDLFKKLVGDKIENNDLKSLAMNIVKACRGL-PIAIVTIAR 348 (512)
Q Consensus 276 s~iivTtR~~~v~~-~~-~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~Gl-PLai~~ia~ 348 (512)
..||.||....... .. ......+.+.+.+.++-..+|..++....... .......|++.+.|. +-.|..+..
T Consensus 150 v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l-~~~~l~~la~~t~G~sgadl~~l~~ 224 (322)
T 1xwi_A 150 ILVLGATNIPWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQNSL-TEADFRELGRKTDGYSGADISIIVR 224 (322)
T ss_dssp EEEEEEESCTTTSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTCCBCC-CHHHHHHHHHTCTTCCHHHHHHHHH
T ss_pred EEEEEecCCcccCCHHHHhhcCeEEEeCCcCHHHHHHHHHHHHhcCCCCC-CHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 66666775543221 00 12235678888999999999988875432211 134567888999887 444555544
No 29
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=98.63 E-value=2.9e-07 Score=89.97 Aligned_cols=184 Identities=9% Similarity=0.070 Sum_probs=105.6
Q ss_pred ccCccccccchHHHHHHHHHhcCCC-ceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCCCHHHHHHHHHH
Q 010355 145 IKGYEAFESRMSTLNDVINALKNPD-VHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIAD 223 (512)
Q Consensus 145 ~~~~~~~~gR~~~l~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~i~~ 223 (512)
|.....++|+...+..|..++..+. .+++.++|++|+|||++|+.+++... ..++.++.+.. ... .++.++.
T Consensus 22 P~~~~~ivg~~~~~~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~la~~l~-----~~~~~i~~~~~-~~~-~i~~~~~ 94 (324)
T 3u61_B 22 PSTIDECILPAFDKETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDVN-----ADMMFVNGSDC-KID-FVRGPLT 94 (324)
T ss_dssp CCSTTTSCCCHHHHHHHHHHHHTTCCCSEEEECSSTTSSHHHHHHHHHHHTT-----EEEEEEETTTC-CHH-HHHTHHH
T ss_pred CCCHHHHhCcHHHHHHHHHHHHcCCCCeEEEeeCcCCCCHHHHHHHHHHHhC-----CCEEEEccccc-CHH-HHHHHHH
Confidence 4456779999999999999998554 36778889999999999999988763 22445554432 222 2222211
Q ss_pred HhCCCCCCCCchHHHHHHHHHHhCCCeEEEEEeCCCChh---hhhhhCCCCC--CCCeEEEEEeCCcchh-ccccCCccc
Q 010355 224 KLGLKFYEESESGRARKLCERLKKEKKILVILDDIWTNL---DLENVGIPFG--VRGCRVLMTARSQDVL-SSKMDCQNN 297 (512)
Q Consensus 224 ~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~---~~~~l~~~~~--~~gs~iivTtR~~~v~-~~~~~~~~~ 297 (512)
....... ..+++.+||||++.... ....+...+. ..++++|+||....-. .........
T Consensus 95 ~~~~~~~---------------~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~sR~~~ 159 (324)
T 3u61_B 95 NFASAAS---------------FDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQSRCRV 159 (324)
T ss_dssp HHHHBCC---------------CSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHHHSEE
T ss_pred HHHhhcc---------------cCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHhhCcE
Confidence 1100000 01367899999998654 2222211111 3456788888765421 111122357
Q ss_pred eecCCCCHHHHHHHHH-------HHhCCCCCCchhHHHHHHHHHHcCCChhHHHHHHHHh
Q 010355 298 FLIGVLNESEARDLFK-------KLVGDKIENNDLKSLAMNIVKACRGLPIAIVTIARAL 350 (512)
Q Consensus 298 ~~l~~L~~~ea~~Lf~-------~~~~~~~~~~~~~~~~~~I~~~~~GlPLai~~ia~~L 350 (512)
+.+.+++.++-..++. ..+......-.-.+....|++.++|.+..+......+
T Consensus 160 i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~gd~R~a~~~L~~~ 219 (324)
T 3u61_B 160 ITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIADMKVVAALVKKNFPDFRKTIGELDSY 219 (324)
T ss_dssp EECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBSCHHHHHHHHHHTCSCTTHHHHHHHHH
T ss_pred EEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 8999999887443332 2221111111002567788899998877544443333
No 30
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.62 E-value=7.9e-07 Score=84.53 Aligned_cols=194 Identities=15% Similarity=0.170 Sum_probs=102.3
Q ss_pred ccccchHHHHHHHH-------Hhc---CCCceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCCCHHHHHH
Q 010355 150 AFESRMSTLNDVIN-------ALK---NPDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQG 219 (512)
Q Consensus 150 ~~~gR~~~l~~l~~-------~L~---~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ll~ 219 (512)
.++|+...+..++. .+. ....+.+.|+|++|+|||+||+.+++.... . .+.+..+...
T Consensus 34 ~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~~----~-~~~i~~~~~~------- 101 (272)
T 1d2n_A 34 GIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNF----P-FIKICSPDKM------- 101 (272)
T ss_dssp CCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHTC----S-EEEEECGGGC-------
T ss_pred CCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCC----C-EEEEeCHHHh-------
Confidence 45666555554444 332 455688999999999999999999987531 1 2223322100
Q ss_pred HHHHHhCCCCCCCCchHHHHHHHHHHhCCCeEEEEEeCCCCh------------hhhhhh---CCCC--CCCCeEEEEEe
Q 010355 220 QIADKLGLKFYEESESGRARKLCERLKKEKKILVILDDIWTN------------LDLENV---GIPF--GVRGCRVLMTA 282 (512)
Q Consensus 220 ~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~------------~~~~~l---~~~~--~~~gs~iivTt 282 (512)
++. ...........+.......++.+|+||++... ..+..+ .... ......||.||
T Consensus 102 -----~g~--~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ii~tt 174 (272)
T 1d2n_A 102 -----IGF--SETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIGTT 174 (272)
T ss_dssp -----TTC--CHHHHHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEEEEE
T ss_pred -----cCC--chHHHHHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEEEEec
Confidence 010 00000112233333333356899999998532 111222 1111 12334566677
Q ss_pred CCcchhcc--ccCC-ccceecCCCCH-HHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCC------hhHHHHHHHHhcc
Q 010355 283 RSQDVLSS--KMDC-QNNFLIGVLNE-SEARDLFKKLVGDKIENNDLKSLAMNIVKACRGL------PIAIVTIARALRN 352 (512)
Q Consensus 283 R~~~v~~~--~~~~-~~~~~l~~L~~-~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~Gl------PLai~~ia~~L~~ 352 (512)
........ .... ...+.+++++. ++...++.+... .. ......|++.+.|. +-++.++-.....
T Consensus 175 n~~~~l~~~~l~~rf~~~i~~p~l~~r~~i~~i~~~~~~---~~---~~~~~~l~~~~~g~~~~g~ir~l~~~l~~a~~~ 248 (272)
T 1d2n_A 175 SRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEALELLGN---FK---DKERTTIAQQVKGKKVWIGIKKLLMLIEMSLQM 248 (272)
T ss_dssp SCHHHHHHTTCTTTSSEEEECCCEEEHHHHHHHHHHHTC---SC---HHHHHHHHHHHTTSEEEECHHHHHHHHHHHTTS
T ss_pred CChhhcchhhhhcccceEEcCCCccHHHHHHHHHHhcCC---CC---HHHHHHHHHHhcCCCccccHHHHHHHHHHHhhh
Confidence 66533211 1122 35688899988 666666655321 11 34567888888883 3333333333222
Q ss_pred CCHHHHHHHHHHhcCC
Q 010355 353 KNTFEWKSALRELTRP 368 (512)
Q Consensus 353 ~~~~~w~~~l~~l~~~ 368 (512)
.....+..+++.+...
T Consensus 249 ~~~~~~~~~~~~l~~~ 264 (272)
T 1d2n_A 249 DPEYRVRKFLALLREE 264 (272)
T ss_dssp CGGGHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHHHHc
Confidence 3455666666665543
No 31
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.60 E-value=3.8e-07 Score=89.72 Aligned_cols=176 Identities=15% Similarity=0.153 Sum_probs=105.2
Q ss_pred ccCccccccchHHHHHHHHHhc-----CCCceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCCCHHHHHH
Q 010355 145 IKGYEAFESRMSTLNDVINALK-----NPDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQG 219 (512)
Q Consensus 145 ~~~~~~~~gR~~~l~~l~~~L~-----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ll~ 219 (512)
|.....|+|+...+..+..++. ....+.+.|+|++|+|||+||+.+++.... . .+.++.+.......+
T Consensus 25 p~~~~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~~~--~---~~~~~~~~~~~~~~~-- 97 (338)
T 3pfi_A 25 PSNFDGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEMSA--N---IKTTAAPMIEKSGDL-- 97 (338)
T ss_dssp CCSGGGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHTTC--C---EEEEEGGGCCSHHHH--
T ss_pred CCCHHHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHhCC--C---eEEecchhccchhHH--
Confidence 3456679999999998888776 234567899999999999999999887542 1 233333222111111
Q ss_pred HHHHHhCCCCCCCCchHHHHHHHHHHhCCCeEEEEEeCCCChh--hh-------hhhCC-------------CCCCCCeE
Q 010355 220 QIADKLGLKFYEESESGRARKLCERLKKEKKILVILDDIWTNL--DL-------ENVGI-------------PFGVRGCR 277 (512)
Q Consensus 220 ~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~--~~-------~~l~~-------------~~~~~gs~ 277 (512)
..+... ..++.+|+||++.... .. +.... ....++..
T Consensus 98 -------------------~~~~~~--~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (338)
T 3pfi_A 98 -------------------AAILTN--LSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFT 156 (338)
T ss_dssp -------------------HHHHHT--CCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCCE
T ss_pred -------------------HHHHHh--ccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCeE
Confidence 111111 1356788999986431 11 11100 00012356
Q ss_pred EEEEeCCcchhc-cccCC-ccceecCCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChhHHHHHHHH
Q 010355 278 VLMTARSQDVLS-SKMDC-QNNFLIGVLNESEARDLFKKLVGDKIENNDLKSLAMNIVKACRGLPIAIVTIARA 349 (512)
Q Consensus 278 iivTtR~~~v~~-~~~~~-~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~GlPLai~~ia~~ 349 (512)
+|.||....... ..... ...+.+.+++.++...++.+.+..... .--.+....|++.+.|+|-.+..+...
T Consensus 157 ~i~atn~~~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~~~-~~~~~~~~~l~~~~~G~~r~l~~~l~~ 229 (338)
T 3pfi_A 157 LIGATTRAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLNK-TCEEKAALEIAKRSRSTPRIALRLLKR 229 (338)
T ss_dssp EEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTC-EECHHHHHHHHHTTTTCHHHHHHHHHH
T ss_pred EEEeCCCccccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhcCC-CCCHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 666666543221 11122 267999999999999999887642211 112356778899999999666554443
No 32
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=98.58 E-value=2.5e-06 Score=82.06 Aligned_cols=182 Identities=15% Similarity=0.200 Sum_probs=104.0
Q ss_pred cCccccccchHHHHHHHHHhcC------------CCceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCCC
Q 010355 146 KGYEAFESRMSTLNDVINALKN------------PDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPD 213 (512)
Q Consensus 146 ~~~~~~~gR~~~l~~l~~~L~~------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~ 213 (512)
.....++|.+..++.|..++.. ...+.+.|+|++|+|||+||+.++..... ..+.++.+.-..
T Consensus 18 ~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~~~-----~~~~i~~~~l~~ 92 (297)
T 3b9p_A 18 VEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATECSA-----TFLNISAASLTS 92 (297)
T ss_dssp CCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHTTC-----EEEEEESTTTSS
T ss_pred CCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHhCC-----CeEEeeHHHHhh
Confidence 3456789999988888877631 23578999999999999999999987641 223344332110
Q ss_pred HHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHhCCCeEEEEEeCCCChhh-----------------hhhh-CCCCC--C
Q 010355 214 VKKIQGQIADKLGLKFYEESESGRARKLCERLKKEKKILVILDDIWTNLD-----------------LENV-GIPFG--V 273 (512)
Q Consensus 214 ~~~ll~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~-----------------~~~l-~~~~~--~ 273 (512)
. ...........+.......++.+|+||++..... +..+ ..+.. +
T Consensus 93 --------------~-~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~ 157 (297)
T 3b9p_A 93 --------------K-YVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDG 157 (297)
T ss_dssp --------------S-SCSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC-----
T ss_pred --------------c-ccchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCC
Confidence 0 0011122233344444445689999999954310 1111 11111 2
Q ss_pred CCeEEEEEeCCcchhc-ccc-CCccceecCCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChh-HHHHHHH
Q 010355 274 RGCRVLMTARSQDVLS-SKM-DCQNNFLIGVLNESEARDLFKKLVGDKIENNDLKSLAMNIVKACRGLPI-AIVTIAR 348 (512)
Q Consensus 274 ~gs~iivTtR~~~v~~-~~~-~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~GlPL-ai~~ia~ 348 (512)
.+..||.||....... ... .....+.+...+.++...++...+...... -.......|++.+.|.+- +|..+..
T Consensus 158 ~~v~vi~~tn~~~~l~~~l~~R~~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~~la~~~~g~~~~~l~~l~~ 234 (297)
T 3b9p_A 158 DRIVVLAATNRPQELDEAALRRFTKRVYVSLPDEQTRELLLNRLLQKQGSP-LDTEALRRLAKITDGYSGSDLTALAK 234 (297)
T ss_dssp -CEEEEEEESCGGGBCHHHHHHCCEEEECCCCCHHHHHHHHHHHHGGGSCC-SCHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred CcEEEEeecCChhhCCHHHHhhCCeEEEeCCcCHHHHHHHHHHHHHhcCCC-CCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 3466777777643211 000 122467777788888888888776422111 113456788999999876 5544443
No 33
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=98.58 E-value=1.5e-06 Score=86.16 Aligned_cols=183 Identities=13% Similarity=0.103 Sum_probs=105.8
Q ss_pred cCccccccchHHHHHHHHHhc------------CCCceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCCC
Q 010355 146 KGYEAFESRMSTLNDVINALK------------NPDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPD 213 (512)
Q Consensus 146 ~~~~~~~gR~~~l~~l~~~L~------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~ 213 (512)
.....++|.+..++.|.+.+. ....+.|.|+|++|+|||+||+.+++.... ..+.++++.-..
T Consensus 81 ~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~-----~~~~i~~~~l~~ 155 (357)
T 3d8b_A 81 VNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQSGA-----TFFSISASSLTS 155 (357)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHTTC-----EEEEEEGGGGCC
T ss_pred CCHHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHcCC-----eEEEEehHHhhc
Confidence 345678999998888887663 234578999999999999999999887531 234444432111
Q ss_pred HHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHhCCCeEEEEEeCCCCh-------------h----hhhhhC-CCC-CCC
Q 010355 214 VKKIQGQIADKLGLKFYEESESGRARKLCERLKKEKKILVILDDIWTN-------------L----DLENVG-IPF-GVR 274 (512)
Q Consensus 214 ~~~ll~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~-------------~----~~~~l~-~~~-~~~ 274 (512)
. . ..........+.......++.+|+||++... . .+..+. ... ...
T Consensus 156 ~--------------~-~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~ 220 (357)
T 3d8b_A 156 K--------------W-VGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSED 220 (357)
T ss_dssp S--------------S-TTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CCC
T ss_pred c--------------c-cchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCCC
Confidence 0 0 0001122233344443456899999998432 0 111111 111 134
Q ss_pred CeEEEEEeCCcchh-cccc-CCccceecCCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCC-ChhHHHHHHHH
Q 010355 275 GCRVLMTARSQDVL-SSKM-DCQNNFLIGVLNESEARDLFKKLVGDKIENNDLKSLAMNIVKACRG-LPIAIVTIARA 349 (512)
Q Consensus 275 gs~iivTtR~~~v~-~~~~-~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~G-lPLai~~ia~~ 349 (512)
+..||.||...... .... .....+.+...+.++...++...+...... -.......|++.+.| .|-.|..+...
T Consensus 221 ~v~vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~-l~~~~l~~la~~t~G~s~~dl~~l~~~ 297 (357)
T 3d8b_A 221 RILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQCC-LSEEEIEQIVQQSDAFSGADMTQLCRE 297 (357)
T ss_dssp CEEEEEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSCBC-CCHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred CEEEEEecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcCCC-ccHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 55666677654321 1111 222467888899999999998776422111 113467789999988 55566665543
No 34
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=98.55 E-value=3.3e-07 Score=94.15 Aligned_cols=151 Identities=14% Similarity=0.172 Sum_probs=88.3
Q ss_pred CccccccchHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHhhhhcCCC----C-eEEEEEeCCCCCHHHHHHHH
Q 010355 147 GYEAFESRMSTLNDVINALKNPDVHMIGAYGMAGVGKTMLVKEVARQAKADKLF----D-EVVYAEVSQRPDVKKIQGQI 221 (512)
Q Consensus 147 ~~~~~~gR~~~l~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f----~-~~~wv~~~~~~~~~~ll~~i 221 (512)
...+++||+.++..+...|.......+.|+|++|+|||+||+.++......... . .++.++++..
T Consensus 178 ~ld~iiGr~~~i~~l~~~l~r~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~~---------- 247 (468)
T 3pxg_A 178 SLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMGTK---------- 247 (468)
T ss_dssp CSCCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC---------------
T ss_pred CCCCccCcHHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCCcc----------
Confidence 356799999999999999986666778899999999999999999886422111 1 1223333200
Q ss_pred HHHhCCCCCCCCchHHHHHHHHHHhCCCeEEEEEeCCCChhhhhhhCCCCCCCCeEEEEEeCCcc------hhccccCCc
Q 010355 222 ADKLGLKFYEESESGRARKLCERLKKEKKILVILDDIWTNLDLENVGIPFGVRGCRVLMTARSQD------VLSSKMDCQ 295 (512)
Q Consensus 222 ~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~~~~l~~~~~~~gs~iivTtR~~~------v~~~~~~~~ 295 (512)
..| ........+...+...++.+|++| ........+...+.....++|.+|.... .........
T Consensus 248 --~~g------~~e~~~~~~~~~~~~~~~~iLfiD--~~~~a~~~L~~~L~~g~v~vI~at~~~e~~~~~~~~~al~~Rf 317 (468)
T 3pxg_A 248 --YRG------EFEDRLKKVMDEIRQAGNIILFID--AAIDASNILKPSLARGELQCIGATTLDEYRKYIEKDAALERRF 317 (468)
T ss_dssp -------------CTTHHHHHHHHHTCCCCEEEEC--C--------CCCTTSSSCEEEEECCTTTTHHHHTTCSHHHHSE
T ss_pred --ccc------hHHHHHHHHHHHHHhcCCeEEEEe--CchhHHHHHHHhhcCCCEEEEecCCHHHHHHHhhcCHHHHHhC
Confidence 000 001123345555555567899999 2222222232222233456666665443 111112233
Q ss_pred cceecCCCCHHHHHHHHHHHhC
Q 010355 296 NNFLIGVLNESEARDLFKKLVG 317 (512)
Q Consensus 296 ~~~~l~~L~~~ea~~Lf~~~~~ 317 (512)
..+.+.+.+.++...++...+.
T Consensus 318 ~~i~v~~p~~e~~~~iL~~~~~ 339 (468)
T 3pxg_A 318 QPIQVDQPSVDESIQILQGLRD 339 (468)
T ss_dssp EEEECCCCCHHHHHHHHHHTTT
T ss_pred ccceeCCCCHHHHHHHHHHHHH
Confidence 4699999999999999987664
No 35
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=98.54 E-value=1.7e-06 Score=84.37 Aligned_cols=182 Identities=17% Similarity=0.153 Sum_probs=107.4
Q ss_pred cCccccccchHHHHHHHHHhc------------CCCceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCCC
Q 010355 146 KGYEAFESRMSTLNDVINALK------------NPDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPD 213 (512)
Q Consensus 146 ~~~~~~~gR~~~l~~l~~~L~------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~ 213 (512)
.....++|.+..++.|..++. ....+.+.|+|++|+|||+||+.+++.... ..+.++.+
T Consensus 15 ~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~-----~~~~v~~~---- 85 (322)
T 3eie_A 15 VKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANS-----TFFSVSSS---- 85 (322)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHHTC-----EEEEEEHH----
T ss_pred CCHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHHCC-----CEEEEchH----
Confidence 446678999999888887762 122467999999999999999999987642 12333321
Q ss_pred HHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHhCCCeEEEEEeCCCChhh-------------hh----hhCCC-CCCCC
Q 010355 214 VKKIQGQIADKLGLKFYEESESGRARKLCERLKKEKKILVILDDIWTNLD-------------LE----NVGIP-FGVRG 275 (512)
Q Consensus 214 ~~~ll~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~-------------~~----~l~~~-~~~~g 275 (512)
.+. ... ..........+.......++.+|+||++..... .. .+... ....+
T Consensus 86 --~l~----~~~-----~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~ 154 (322)
T 3eie_A 86 --DLV----SKW-----MGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQG 154 (322)
T ss_dssp --HHH----TTT-----GGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCCC
T ss_pred --HHh----hcc-----cchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCCc
Confidence 111 100 011122344455555555789999999964311 11 11111 12445
Q ss_pred eEEEEEeCCcchhcc--ccCCccceecCCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCC-ChhHHHHHHH
Q 010355 276 CRVLMTARSQDVLSS--KMDCQNNFLIGVLNESEARDLFKKLVGDKIENNDLKSLAMNIVKACRG-LPIAIVTIAR 348 (512)
Q Consensus 276 s~iivTtR~~~v~~~--~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~G-lPLai~~ia~ 348 (512)
..||.||........ .......+.+...+.++-.++|..++....... .......|++.+.| .+-.|..+..
T Consensus 155 v~vi~atn~~~~ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~-~~~~l~~la~~t~g~sg~di~~l~~ 229 (322)
T 3eie_A 155 VLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPCVL-TKEDYRTLGAMTEGYSGSDIAVVVK 229 (322)
T ss_dssp EEEEEEESCGGGSCHHHHHHCCEEEECCCCCHHHHHHHHHHHHTTCCCCC-CHHHHHHHHHTTTTCCHHHHHHHHH
T ss_pred eEEEEecCChhhCCHHHHcccCeEEEeCCCCHHHHHHHHHHHhccCCCCC-CHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 667777765433210 011235678888999999999998886433211 12456788888887 4545554443
No 36
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.52 E-value=1.2e-06 Score=87.22 Aligned_cols=197 Identities=10% Similarity=0.079 Sum_probs=102.9
Q ss_pred ccccccchHHHHH---HHHHhcCCCc--eEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEe----CCCCCHHHHH
Q 010355 148 YEAFESRMSTLND---VINALKNPDV--HMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEV----SQRPDVKKIQ 218 (512)
Q Consensus 148 ~~~~~gR~~~l~~---l~~~L~~~~~--~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~----~~~~~~~~ll 218 (512)
...|+|++..+.. +...+..... +.+.|+|++|+|||+||+.+++.......| +.+.. +........+
T Consensus 43 ~~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~---~~~~~~~~~~~~~~~~~~~ 119 (368)
T 3uk6_A 43 SQGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPF---TAIAGSEIFSLEMSKTEAL 119 (368)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCE---EEEEGGGGSCSSSCHHHHH
T ss_pred hhhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHhcccCCc---ccccchhhhhcccchhHHH
Confidence 5679999988665 4455554433 589999999999999999999987532122 22221 1223334444
Q ss_pred HHHHHHh-CCC--------------------C--------C--CCCchH---HHHHHHHH-HhCCC----eEEEEEeCCC
Q 010355 219 GQIADKL-GLK--------------------F--------Y--EESESG---RARKLCER-LKKEK----KILVILDDIW 259 (512)
Q Consensus 219 ~~i~~~l-~~~--------------------~--------~--~~~~~~---~~~~l~~~-l~~~k----~~LlVlDdv~ 259 (512)
...+... +.. . . ...... .+...... ...++ +.+|+||++.
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl~IDEi~ 199 (368)
T 3uk6_A 120 TQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFIDEVH 199 (368)
T ss_dssp HHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCEEEEESGG
T ss_pred HHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCceEEEhhcc
Confidence 4433321 100 0 0 000111 11111111 11233 4599999996
Q ss_pred Ch--hhhhhhCCCCC-CCCeEEEEEeCCc-------------chhccccCCccceecCCCCHHHHHHHHHHHhCCCCCCc
Q 010355 260 TN--LDLENVGIPFG-VRGCRVLMTARSQ-------------DVLSSKMDCQNNFLIGVLNESEARDLFKKLVGDKIENN 323 (512)
Q Consensus 260 ~~--~~~~~l~~~~~-~~gs~iivTtR~~-------------~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~ 323 (512)
.. .....+...+. .....++++|... .+..........+.+.+++.++...++...+..... .
T Consensus 200 ~l~~~~~~~L~~~le~~~~~~~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~il~~~~~~~~~-~ 278 (368)
T 3uk6_A 200 MLDIESFSFLNRALESDMAPVLIMATNRGITRIRGTSYQSPHGIPIDLLDRLLIVSTTPYSEKDTKQILRIRCEEEDV-E 278 (368)
T ss_dssp GSBHHHHHHHHHHTTCTTCCEEEEEESCSEEECBTSSCEEETTCCHHHHTTEEEEEECCCCHHHHHHHHHHHHHHTTC-C
T ss_pred ccChHHHHHHHHHhhCcCCCeeeeecccceeeeeccCCCCcccCCHHHHhhccEEEecCCCHHHHHHHHHHHHHHcCC-C
Confidence 53 22222211111 1122344444310 011111223345899999999999999987642211 1
Q ss_pred hhHHHHHHHHHHcC-CChhHHHHHHH
Q 010355 324 DLKSLAMNIVKACR-GLPIAIVTIAR 348 (512)
Q Consensus 324 ~~~~~~~~I~~~~~-GlPLai~~ia~ 348 (512)
--.+....|++.+. |.|..+..+..
T Consensus 279 ~~~~~l~~l~~~~~~G~~r~~~~ll~ 304 (368)
T 3uk6_A 279 MSEDAYTVLTRIGLETSLRYAIQLIT 304 (368)
T ss_dssp BCHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred CCHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 12356788899997 87776554443
No 37
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.52 E-value=2.2e-07 Score=91.98 Aligned_cols=197 Identities=12% Similarity=0.078 Sum_probs=107.9
Q ss_pred ccCccccccchHHHHHHHHHh-cCCCceEEEEEcCCCCcHHHHHHHHHHhhhhcCC----CCe-----------------
Q 010355 145 IKGYEAFESRMSTLNDVINAL-KNPDVHMIGAYGMAGVGKTMLVKEVARQAKADKL----FDE----------------- 202 (512)
Q Consensus 145 ~~~~~~~~gR~~~l~~l~~~L-~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----f~~----------------- 202 (512)
|.....++|++..+..|..++ ..+..+.+.|+|++|+|||||++.++........ +++
T Consensus 10 P~~~~~~vg~~~~~~~l~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~~~ 89 (354)
T 1sxj_E 10 PKSLNALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVS 89 (354)
T ss_dssp CCSGGGCCSCHHHHHHHHTTTTCTTCCCCEEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCEE
T ss_pred CCCHHHhcCCHHHHHHHHHHHhhCCCCCeEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeeeec
Confidence 344567899999999999988 6555445999999999999999999885321100 000
Q ss_pred ---EEEEEeCCCC-CHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHhCCCeEEEEEeCCCChh--hhhh----hCCCCC
Q 010355 203 ---VVYAEVSQRP-DVKKIQGQIADKLGLKFYEESESGRARKLCERLKKEKKILVILDDIWTNL--DLEN----VGIPFG 272 (512)
Q Consensus 203 ---~~wv~~~~~~-~~~~ll~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~--~~~~----l~~~~~ 272 (512)
.+.+..+... ......+.++..+.....-... . .+ ..+. +++-+||||++.... .... +..+
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~---~-~l-s~l~-~~~~vlilDE~~~L~~~~~~~L~~~le~~-- 161 (354)
T 1sxj_E 90 SPYHLEITPSDMGNNDRIVIQELLKEVAQMEQVDFQ---D-SK-DGLA-HRYKCVIINEANSLTKDAQAALRRTMEKY-- 161 (354)
T ss_dssp CSSEEEECCC----CCHHHHHHHHHHHTTTTC------------------CCEEEEEECTTSSCHHHHHHHHHHHHHS--
T ss_pred ccceEEecHhhcCCcchHHHHHHHHHHHHhcccccc---c-cc-cccC-CCCeEEEEeCccccCHHHHHHHHHHHHhh--
Confidence 1111111100 0000122222222111000000 0 00 0011 357799999997531 1121 2111
Q ss_pred CCCeEEEEEeCCcch-hccccCCccceecCCCCHHHHHHHHHHHhCCCCCCchh-HHHHHHHHHHcCCChhHHHHHHHHh
Q 010355 273 VRGCRVLMTARSQDV-LSSKMDCQNNFLIGVLNESEARDLFKKLVGDKIENNDL-KSLAMNIVKACRGLPIAIVTIARAL 350 (512)
Q Consensus 273 ~~gs~iivTtR~~~v-~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~-~~~~~~I~~~~~GlPLai~~ia~~L 350 (512)
..++.+|++|..... ..........+.+.+++.++...++.+.+...... -- .+.+..|++.++|.+..+..+...+
T Consensus 162 ~~~~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~l~~i~~~~~G~~r~a~~~l~~~ 240 (354)
T 1sxj_E 162 SKNIRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERIQ-LETKDILKRIAQASNGNLRVSLLMLESM 240 (354)
T ss_dssp TTTEEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCE-ECCSHHHHHHHHHHTTCHHHHHHHHTHH
T ss_pred cCCCEEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCCC-CCcHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 346788888876432 22122334689999999999999998876321110 00 2456789999999988766555443
No 38
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=98.51 E-value=3.8e-06 Score=84.24 Aligned_cols=183 Identities=14% Similarity=0.146 Sum_probs=105.3
Q ss_pred ccCccccccchHHHHHHHHHhc------------CCCceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCC
Q 010355 145 IKGYEAFESRMSTLNDVINALK------------NPDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRP 212 (512)
Q Consensus 145 ~~~~~~~~gR~~~l~~l~~~L~------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~ 212 (512)
+.....++|....++.|..++. ....+.|.|+|++|+|||+||+.+++.... ..+.++++.-.
T Consensus 111 ~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~~~-----~~~~v~~~~l~ 185 (389)
T 3vfd_A 111 AVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESNA-----TFFNISAASLT 185 (389)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHTTC-----EEEEECSCCC-
T ss_pred CCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhhcC-----cEEEeeHHHhh
Confidence 3456678999999999888772 123478999999999999999999877541 23334333211
Q ss_pred CHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHhCCCeEEEEEeCCCChh-------------hhhhhC-----CCC-CC
Q 010355 213 DVKKIQGQIADKLGLKFYEESESGRARKLCERLKKEKKILVILDDIWTNL-------------DLENVG-----IPF-GV 273 (512)
Q Consensus 213 ~~~~ll~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~-------------~~~~l~-----~~~-~~ 273 (512)
.. . . .........++.......+.+|+||++.... ....+. ... ..
T Consensus 186 ~~--~-------~------g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~ 250 (389)
T 3vfd_A 186 SK--Y-------V------GEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGD 250 (389)
T ss_dssp ---------------------CHHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC----
T ss_pred cc--c-------c------chHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCC
Confidence 10 0 0 0111223344444444467899999996430 011110 000 12
Q ss_pred CCeEEEEEeCCcchh-ccccC-CccceecCCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChh-HHHHHHH
Q 010355 274 RGCRVLMTARSQDVL-SSKMD-CQNNFLIGVLNESEARDLFKKLVGDKIENNDLKSLAMNIVKACRGLPI-AIVTIAR 348 (512)
Q Consensus 274 ~gs~iivTtR~~~v~-~~~~~-~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~GlPL-ai~~ia~ 348 (512)
....||.||...... ..... ....+.+...+.++...++...+...... -.......|++.+.|..- +|..+..
T Consensus 251 ~~v~vI~atn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~-l~~~~~~~la~~~~g~~~~~l~~L~~ 327 (389)
T 3vfd_A 251 DRVLVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGSP-LTQKELAQLARMTDGYSGSDLTALAK 327 (389)
T ss_dssp -CEEEEEEESCGGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCCC-SCHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred CCEEEEEecCCchhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcCCC-CCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 345666677653322 11111 22468888999999999998887532221 113466789999988544 5555543
No 39
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=98.50 E-value=5.8e-06 Score=84.26 Aligned_cols=183 Identities=16% Similarity=0.188 Sum_probs=104.8
Q ss_pred cCccccccchHHHHHHHHHhc------------CCCceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCCC
Q 010355 146 KGYEAFESRMSTLNDVINALK------------NPDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPD 213 (512)
Q Consensus 146 ~~~~~~~gR~~~l~~l~~~L~------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~ 213 (512)
.....++|.+..++.|...+. ....+.|.|+|++|+|||+||+.+++.... .-++.++...
T Consensus 131 ~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~~------~~~~~v~~~~- 203 (444)
T 2zan_A 131 VKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANN------STFFSISSSD- 203 (444)
T ss_dssp CCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCCS------SEEEEECCC--
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHcCC------CCEEEEeHHH-
Confidence 445678899988888887662 123478999999999999999999987621 1123333221
Q ss_pred HHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHhCCCeEEEEEeCCCChh-------------hhhhhCCCC-----CCCC
Q 010355 214 VKKIQGQIADKLGLKFYEESESGRARKLCERLKKEKKILVILDDIWTNL-------------DLENVGIPF-----GVRG 275 (512)
Q Consensus 214 ~~~ll~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~-------------~~~~l~~~~-----~~~g 275 (512)
+.... .+. ....+..++......++.+|+||++.... ....+...+ ...+
T Consensus 204 ---l~~~~---~g~------~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~ 271 (444)
T 2zan_A 204 ---LVSKW---LGE------SEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDG 271 (444)
T ss_dssp --------------------CCCTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSS
T ss_pred ---HHhhh---cch------HHHHHHHHHHHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCC
Confidence 11110 111 01123344444444578999999997541 111121111 1345
Q ss_pred eEEEEEeCCcchhc-ccc-CCccceecCCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCC-hhHHHHHHH
Q 010355 276 CRVLMTARSQDVLS-SKM-DCQNNFLIGVLNESEARDLFKKLVGDKIENNDLKSLAMNIVKACRGL-PIAIVTIAR 348 (512)
Q Consensus 276 s~iivTtR~~~v~~-~~~-~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~Gl-PLai~~ia~ 348 (512)
..||.||....... ... .....+.+...+.++...+|..++....... .......|++.+.|. +-.|..+..
T Consensus 272 v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l-~~~~l~~la~~t~G~sgadl~~l~~ 346 (444)
T 2zan_A 272 ILVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQNSL-TEADFQELGRKTDGYSGADISIIVR 346 (444)
T ss_dssp CEEEEEESCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCEEC-CHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred EEEEecCCCccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCCCCC-CHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 66777776543221 111 2224677888888989999988875432111 124567888999884 545555443
No 40
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=98.50 E-value=3.5e-06 Score=81.31 Aligned_cols=174 Identities=13% Similarity=0.196 Sum_probs=100.5
Q ss_pred CccccccchHHHHHHHHHhc-------------CCCceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCCC
Q 010355 147 GYEAFESRMSTLNDVINALK-------------NPDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPD 213 (512)
Q Consensus 147 ~~~~~~gR~~~l~~l~~~L~-------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~ 213 (512)
....++|.+..++.|..++. -...+.+.|+|++|+|||+||+.+++.... ..+.++
T Consensus 13 ~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~-----~~i~v~------ 81 (301)
T 3cf0_A 13 TWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQA-----NFISIK------ 81 (301)
T ss_dssp CGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTC-----EEEEEC------
T ss_pred CHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCC-----CEEEEE------
Confidence 34567888887777766553 134567999999999999999999987641 122222
Q ss_pred HHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHhCCCeEEEEEeCCCChhh--------------------hhhhCCCCCC
Q 010355 214 VKKIQGQIADKLGLKFYEESESGRARKLCERLKKEKKILVILDDIWTNLD--------------------LENVGIPFGV 273 (512)
Q Consensus 214 ~~~ll~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~--------------------~~~l~~~~~~ 273 (512)
...+.... ++.. ......++.......+.+|+||++..... +..+......
T Consensus 82 ~~~l~~~~---~g~~------~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~ 152 (301)
T 3cf0_A 82 GPELLTMW---FGES------EANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTK 152 (301)
T ss_dssp HHHHHHHH---HTTC------TTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTT
T ss_pred hHHHHhhh---cCch------HHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCC
Confidence 22333222 1211 11233444444445789999999964210 1111111123
Q ss_pred CCeEEEEEeCCcchh-cccc---CCccceecCCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChhH
Q 010355 274 RGCRVLMTARSQDVL-SSKM---DCQNNFLIGVLNESEARDLFKKLVGDKIENNDLKSLAMNIVKACRGLPIA 342 (512)
Q Consensus 274 ~gs~iivTtR~~~v~-~~~~---~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~GlPLa 342 (512)
.+..||.||...... .... .-...+.+.+.+.++-.++|...+......... ....++..+.|.|-+
T Consensus 153 ~~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~~~~--~~~~la~~~~g~sg~ 223 (301)
T 3cf0_A 153 KNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDV--DLEFLAKMTNGFSGA 223 (301)
T ss_dssp SSEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCSSC--CHHHHHHTCSSCCHH
T ss_pred CCEEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCCccc--hHHHHHHHcCCCCHH
Confidence 467777788665322 1111 122578899999999999998887532211111 123566677777654
No 41
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.50 E-value=9.9e-08 Score=84.82 Aligned_cols=49 Identities=22% Similarity=0.240 Sum_probs=43.3
Q ss_pred CccccccchHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHhhh
Q 010355 147 GYEAFESRMSTLNDVINALKNPDVHMIGAYGMAGVGKTMLVKEVARQAK 195 (512)
Q Consensus 147 ~~~~~~gR~~~l~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 195 (512)
....|+||+.++..+..++.....+.+.|+|++|+|||+||+.+++...
T Consensus 20 ~~~~~~g~~~~~~~l~~~l~~~~~~~vll~G~~G~GKT~la~~~~~~~~ 68 (187)
T 2p65_A 20 KLDPVIGRDTEIRRAIQILSRRTKNNPILLGDPGVGKTAIVEGLAIKIV 68 (187)
T ss_dssp CSCCCCSCHHHHHHHHHHHTSSSSCEEEEESCGGGCHHHHHHHHHHHHH
T ss_pred ccchhhcchHHHHHHHHHHhCCCCCceEEECCCCCCHHHHHHHHHHHHH
Confidence 4557899999999999999877677889999999999999999998764
No 42
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.48 E-value=1.1e-06 Score=89.46 Aligned_cols=200 Identities=14% Similarity=0.178 Sum_probs=114.3
Q ss_pred ccccc-cchH--HHHHHHHHhcCCC-ceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCCCHHHHHHHHHH
Q 010355 148 YEAFE-SRMS--TLNDVINALKNPD-VHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIAD 223 (512)
Q Consensus 148 ~~~~~-gR~~--~l~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~i~~ 223 (512)
...|+ |... ....+.......+ ...+.|+|++|+||||||+.+++.......-..+++++.. .+...+..
T Consensus 104 fd~fv~g~~n~~a~~~~~~~a~~~~~~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~------~~~~~~~~ 177 (440)
T 2z4s_A 104 FENFVVGPGNSFAYHAALEVAKHPGRYNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSE------KFLNDLVD 177 (440)
T ss_dssp GGGCCCCTTTHHHHHHHHHHHHSTTSSCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHH------HHHHHHHH
T ss_pred hhhcCCCCchHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHH------HHHHHHHH
Confidence 34565 5433 3334444444333 6789999999999999999999877533112234555443 23344444
Q ss_pred HhCCCCCCCCchHHHHHHHHHHhCCCeEEEEEeCCCChh----hhhhhCCCC---CCCCeEEEEEeCCcchh--------
Q 010355 224 KLGLKFYEESESGRARKLCERLKKEKKILVILDDIWTNL----DLENVGIPF---GVRGCRVLMTARSQDVL-------- 288 (512)
Q Consensus 224 ~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~----~~~~l~~~~---~~~gs~iivTtR~~~v~-------- 288 (512)
.+... ....+...+. .++.+|+||+++... ....+...+ ...|..||+||......
T Consensus 178 ~~~~~--------~~~~~~~~~~-~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L 248 (440)
T 2z4s_A 178 SMKEG--------KLNEFREKYR-KKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRL 248 (440)
T ss_dssp HHHTT--------CHHHHHHHHT-TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHH
T ss_pred HHHcc--------cHHHHHHHhc-CCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHH
Confidence 33211 0122333332 256799999996432 111121111 14567888988864221
Q ss_pred ccccCCccceecCCCCHHHHHHHHHHHhC--CCCCCchhHHHHHHHHHHcCCChhHHHHHHHHhc------cC--CHHHH
Q 010355 289 SSKMDCQNNFLIGVLNESEARDLFKKLVG--DKIENNDLKSLAMNIVKACRGLPIAIVTIARALR------NK--NTFEW 358 (512)
Q Consensus 289 ~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~--~~~~~~~~~~~~~~I~~~~~GlPLai~~ia~~L~------~~--~~~~w 358 (512)
...+.....+.+.+++.++...++.+.+. +...++ ++...|++.++|.+-.+.-+...+. ++ +.+.+
T Consensus 249 ~sR~~~g~~i~l~~p~~e~r~~iL~~~~~~~~~~i~~---e~l~~la~~~~gn~R~l~~~L~~~~~~a~~~~~~It~~~~ 325 (440)
T 2z4s_A 249 VSRFQMGLVAKLEPPDEETRKSIARKMLEIEHGELPE---EVLNFVAENVDDNLRRLRGAIIKLLVYKETTGKEVDLKEA 325 (440)
T ss_dssp HHHHHSSBCCBCCCCCHHHHHHHHHHHHHHHTCCCCT---THHHHHHHHCCSCHHHHHHHHHHHHHHHHHSSSCCCHHHH
T ss_pred HhhccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCH---HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence 00112235789999999999999988763 111222 3567888999999876554433221 22 66666
Q ss_pred HHHHHHh
Q 010355 359 KSALREL 365 (512)
Q Consensus 359 ~~~l~~l 365 (512)
..++..+
T Consensus 326 ~~~l~~~ 332 (440)
T 2z4s_A 326 ILLLKDF 332 (440)
T ss_dssp HHHTSTT
T ss_pred HHHHHHH
Confidence 6666654
No 43
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.48 E-value=4e-06 Score=82.94 Aligned_cols=172 Identities=13% Similarity=0.179 Sum_probs=100.9
Q ss_pred CccccccchHHHHHHHHHhc-------------CCCceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCCC
Q 010355 147 GYEAFESRMSTLNDVINALK-------------NPDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPD 213 (512)
Q Consensus 147 ~~~~~~gR~~~l~~l~~~L~-------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~ 213 (512)
.+..+.|-+..++.|.+.+. -...+-|.++|++|+|||.||+++++..... .+.++.+.-.+
T Consensus 146 ~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~-----f~~v~~s~l~s 220 (405)
T 4b4t_J 146 TYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCK-----FIRVSGAELVQ 220 (405)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCE-----EEEEEGGGGSC
T ss_pred CHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCC-----ceEEEhHHhhc
Confidence 34566677776666655432 1235778999999999999999999987632 23344332111
Q ss_pred HHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHhCCCeEEEEEeCCCChh----------------h----hhhhCCCCCC
Q 010355 214 VKKIQGQIADKLGLKFYEESESGRARKLCERLKKEKKILVILDDIWTNL----------------D----LENVGIPFGV 273 (512)
Q Consensus 214 ~~~ll~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~----------------~----~~~l~~~~~~ 273 (512)
. ........+..++...+...+++|+||+++... . +..+......
T Consensus 221 --------------k-~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~ 285 (405)
T 4b4t_J 221 --------------K-YIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETS 285 (405)
T ss_dssp --------------S-STTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCC
T ss_pred --------------c-ccchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCC
Confidence 0 001112234455555555679999999986421 0 1111111124
Q ss_pred CCeEEEEEeCCcchh----ccccCCccceecCCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCCh
Q 010355 274 RGCRVLMTARSQDVL----SSKMDCQNNFLIGVLNESEARDLFKKLVGDKIENNDLKSLAMNIVKACRGLP 340 (512)
Q Consensus 274 ~gs~iivTtR~~~v~----~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~GlP 340 (512)
.+..||.||...... .+...-...+.++.-+.++-.++|+.++......+.. -...|++.|.|.-
T Consensus 286 ~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dv--dl~~lA~~t~G~S 354 (405)
T 4b4t_J 286 KNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGI--NLRKVAEKMNGCS 354 (405)
T ss_dssp CCEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSC--CHHHHHHHCCSCC
T ss_pred CCeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCccC--CHHHHHHHCCCCC
Confidence 456677777665433 1111234678888889999999998877543222221 1456778887753
No 44
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=98.46 E-value=2.9e-06 Score=83.83 Aligned_cols=182 Identities=16% Similarity=0.175 Sum_probs=105.2
Q ss_pred cCccccccchHHHHHHHHHhc------------CCCceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCCC
Q 010355 146 KGYEAFESRMSTLNDVINALK------------NPDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPD 213 (512)
Q Consensus 146 ~~~~~~~gR~~~l~~l~~~L~------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~ 213 (512)
.....++|.+..++.|...+. ....+.|.|+|++|+|||+||+.+++.... ..+.++.+
T Consensus 48 ~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~-----~~~~v~~~---- 118 (355)
T 2qp9_X 48 VKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANS-----TFFSVSSS---- 118 (355)
T ss_dssp CCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHHTC-----EEEEEEHH----
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCC-----CEEEeeHH----
Confidence 345678899988888887662 122356889999999999999999988742 12233222
Q ss_pred HHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHhCCCeEEEEEeCCCChhh-------------hhhh----C-CCCCCCC
Q 010355 214 VKKIQGQIADKLGLKFYEESESGRARKLCERLKKEKKILVILDDIWTNLD-------------LENV----G-IPFGVRG 275 (512)
Q Consensus 214 ~~~ll~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~-------------~~~l----~-~~~~~~g 275 (512)
.+. ... . .........++......++.+|+||++..... ...+ . ......+
T Consensus 119 --~l~----~~~----~-g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~ 187 (355)
T 2qp9_X 119 --DLV----SKW----M-GESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQG 187 (355)
T ss_dssp --HHH----SCC--------CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CC
T ss_pred --HHh----hhh----c-chHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCC
Confidence 111 110 0 11122344444444445789999999964320 1111 1 1111345
Q ss_pred eEEEEEeCCcchhc-c-ccCCccceecCCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCC-ChhHHHHHHH
Q 010355 276 CRVLMTARSQDVLS-S-KMDCQNNFLIGVLNESEARDLFKKLVGDKIENNDLKSLAMNIVKACRG-LPIAIVTIAR 348 (512)
Q Consensus 276 s~iivTtR~~~v~~-~-~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~G-lPLai~~ia~ 348 (512)
..||.||....... . .......+.+.+.+.++-..+|..++....... -......|++.+.| .|-.|..+..
T Consensus 188 v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~~-~~~~l~~la~~t~G~sg~dl~~l~~ 262 (355)
T 2qp9_X 188 VLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPSVL-TKEDYRTLGAMTEGYSGSDIAVVVK 262 (355)
T ss_dssp EEEEEEESCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTSCBCC-CHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred eEEEeecCCcccCCHHHHcccCEEEEeCCcCHHHHHHHHHHHHhhCCCCC-CHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 66776776543211 0 112235678888999999999998876432111 13456788899988 4545555443
No 45
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=98.45 E-value=5.5e-07 Score=87.26 Aligned_cols=152 Identities=9% Similarity=0.078 Sum_probs=83.4
Q ss_pred ccccchHHHHHHHHHhc---------------CCCceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCCCH
Q 010355 150 AFESRMSTLNDVINALK---------------NPDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDV 214 (512)
Q Consensus 150 ~~~gR~~~l~~l~~~L~---------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~ 214 (512)
.++|.+..++.|..++. ......+.|+|++|+|||+||+.+++...........-++.++..
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~--- 108 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRD--- 108 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGG---
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHH---
Confidence 46788777776665443 234557999999999999999999887754322221123333211
Q ss_pred HHHHHHHHHHhCCCCCCCCchHHHHHHHHHHhCCCeEEEEEeCCCCh-----------hhhhhhCCCC--CCCCeEEEEE
Q 010355 215 KKIQGQIADKLGLKFYEESESGRARKLCERLKKEKKILVILDDIWTN-----------LDLENVGIPF--GVRGCRVLMT 281 (512)
Q Consensus 215 ~~ll~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~-----------~~~~~l~~~~--~~~gs~iivT 281 (512)
.+...... ........++... ++.+|+||++... ..+..+...+ ...+..||+|
T Consensus 109 ---------~l~~~~~g-~~~~~~~~~~~~~---~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~~ 175 (309)
T 3syl_A 109 ---------DLVGQYIG-HTAPKTKEVLKRA---MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVILA 175 (309)
T ss_dssp ---------GTCCSSTT-CHHHHHHHHHHHH---TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEEEE
T ss_pred ---------Hhhhhccc-ccHHHHHHHHHhc---CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEEEEe
Confidence 11000000 1111122222222 3469999999732 2222221111 1345677788
Q ss_pred eCCcchh------cccc-CCccceecCCCCHHHHHHHHHHHhC
Q 010355 282 ARSQDVL------SSKM-DCQNNFLIGVLNESEARDLFKKLVG 317 (512)
Q Consensus 282 tR~~~v~------~~~~-~~~~~~~l~~L~~~ea~~Lf~~~~~ 317 (512)
|...... .... .....+.+++++.++...++...+.
T Consensus 176 ~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~ 218 (309)
T 3syl_A 176 GYADRMENFFQSNPGFRSRIAHHIEFPDYSDEELFEIAGHMLD 218 (309)
T ss_dssp ECHHHHHHHHHHSTTHHHHEEEEEEECCCCHHHHHHHHHHHHH
T ss_pred CChHHHHHHHhhCHHHHHhCCeEEEcCCcCHHHHHHHHHHHHH
Confidence 7543210 0001 1226889999999999999988764
No 46
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.44 E-value=1.6e-06 Score=85.28 Aligned_cols=183 Identities=11% Similarity=0.085 Sum_probs=104.9
Q ss_pred ccCccccccchHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCC-eEEEEEeCCCCCHHHHHHHHHH
Q 010355 145 IKGYEAFESRMSTLNDVINALKNPDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFD-EVVYAEVSQRPDVKKIQGQIAD 223 (512)
Q Consensus 145 ~~~~~~~~gR~~~l~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~-~~~wv~~~~~~~~~~ll~~i~~ 223 (512)
|.....++|....+..|..++..+..+.+.++|++|+||||+|+.++...... .+. .+..++.+.......+. .++.
T Consensus 21 p~~~~~~~g~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~-~~~~~~~~~~~~~~~~~~~ir-~~i~ 98 (340)
T 1sxj_C 21 PETLDEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGK-NYSNMVLELNASDDRGIDVVR-NQIK 98 (340)
T ss_dssp CSSGGGCCSCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTT-SHHHHEEEECTTSCCSHHHHH-THHH
T ss_pred CCcHHHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCC-CccceEEEEcCcccccHHHHH-HHHH
Confidence 34456678999889999888887766559999999999999999999876421 111 12233333222222221 1111
Q ss_pred HhCCCCCCCCchHHHHHHHHHHhCCCeEEEEEeCCCCh--hhhhhhCCC--CCCCCeEEEEEeCCcch-hccccCCccce
Q 010355 224 KLGLKFYEESESGRARKLCERLKKEKKILVILDDIWTN--LDLENVGIP--FGVRGCRVLMTARSQDV-LSSKMDCQNNF 298 (512)
Q Consensus 224 ~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~--~~~~~l~~~--~~~~gs~iivTtR~~~v-~~~~~~~~~~~ 298 (512)
.+..... ...+.+-++|+|++... .....+... .+...+++|++|....- ..........+
T Consensus 99 ~~~~~~~--------------~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~i~sR~~~~ 164 (340)
T 1sxj_C 99 DFASTRQ--------------IFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSQCTRF 164 (340)
T ss_dssp HHHHBCC--------------SSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEE
T ss_pred HHHhhcc--------------cCCCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchhHHhhceeE
Confidence 1100000 00124688999998542 222222100 01345677777754431 11112233478
Q ss_pred ecCCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChhHHH
Q 010355 299 LIGVLNESEARDLFKKLVGDKIENNDLKSLAMNIVKACRGLPIAIV 344 (512)
Q Consensus 299 ~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~GlPLai~ 344 (512)
.+.+++.++....+...+...... --......|++.++|.+--+.
T Consensus 165 ~~~~l~~~~~~~~l~~~~~~~~~~-i~~~~~~~i~~~s~G~~r~~~ 209 (340)
T 1sxj_C 165 RFQPLPQEAIERRIANVLVHEKLK-LSPNAEKALIELSNGDMRRVL 209 (340)
T ss_dssp ECCCCCHHHHHHHHHHHHHTTTCC-BCHHHHHHHHHHHTTCHHHHH
T ss_pred eccCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHH
Confidence 899999999999888776321111 113467788899999887443
No 47
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=98.43 E-value=5.5e-06 Score=81.20 Aligned_cols=162 Identities=13% Similarity=0.151 Sum_probs=100.3
Q ss_pred hHHHHHHHHHhcCCC-ceEEEEEcCCCCcHHHHHHHHHHhhhhcC--------------------CCCeEEEEEeC---C
Q 010355 155 MSTLNDVINALKNPD-VHMIGAYGMAGVGKTMLVKEVARQAKADK--------------------LFDEVVYAEVS---Q 210 (512)
Q Consensus 155 ~~~l~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~--------------------~f~~~~wv~~~---~ 210 (512)
....+.|...+..++ .+.+.++|++|+|||++|+.+++...... +++ ..++... .
T Consensus 8 ~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d-~~~~~~~~~~~ 86 (334)
T 1a5t_A 8 RPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPD-YYTLAPEKGKN 86 (334)
T ss_dssp HHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTT-EEEECCCTTCS
T ss_pred HHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCC-EEEEeccccCC
Confidence 455667777777555 46799999999999999999998764221 112 2233221 1
Q ss_pred CCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHh----CCCeEEEEEeCCCCh--hhhhh----hCCCCCCCCeEEEE
Q 010355 211 RPDVKKIQGQIADKLGLKFYEESESGRARKLCERLK----KEKKILVILDDIWTN--LDLEN----VGIPFGVRGCRVLM 280 (512)
Q Consensus 211 ~~~~~~ll~~i~~~l~~~~~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~--~~~~~----l~~~~~~~gs~iiv 280 (512)
..... .+..+.+.+. .+++-++|+|++... ...+. +..| ..++.+|+
T Consensus 87 ~~~i~---------------------~ir~l~~~~~~~~~~~~~kvviIdead~l~~~a~naLLk~lEep--~~~~~~Il 143 (334)
T 1a5t_A 87 TLGVD---------------------AVREVTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEEP--PAETWFFL 143 (334)
T ss_dssp SBCHH---------------------HHHHHHHHTTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTSC--CTTEEEEE
T ss_pred CCCHH---------------------HHHHHHHHHhhccccCCcEEEEECchhhcCHHHHHHHHHHhcCC--CCCeEEEE
Confidence 11221 2223333332 246789999999753 22222 2222 45677777
Q ss_pred EeCCcc-hhccccCCccceecCCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChhHHHHH
Q 010355 281 TARSQD-VLSSKMDCQNNFLIGVLNESEARDLFKKLVGDKIENNDLKSLAMNIVKACRGLPIAIVTI 346 (512)
Q Consensus 281 TtR~~~-v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~GlPLai~~i 346 (512)
+|.... +..........+.+.+++.++...++.+... .. .+.+..+++.++|.|..+..+
T Consensus 144 ~t~~~~~l~~ti~SRc~~~~~~~~~~~~~~~~L~~~~~---~~---~~~~~~l~~~s~G~~r~a~~~ 204 (334)
T 1a5t_A 144 ATREPERLLATLRSRCRLHYLAPPPEQYAVTWLSREVT---MS---QDALLAALRLSAGSPGAALAL 204 (334)
T ss_dssp EESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHCC---CC---HHHHHHHHHHTTTCHHHHHHT
T ss_pred EeCChHhCcHHHhhcceeeeCCCCCHHHHHHHHHHhcC---CC---HHHHHHHHHHcCCCHHHHHHH
Confidence 776653 2222233446899999999999999988751 11 245678999999999866543
No 48
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.41 E-value=5.1e-06 Score=83.51 Aligned_cols=171 Identities=18% Similarity=0.255 Sum_probs=98.2
Q ss_pred ccccccchHHHHHHHHHhc-------------CCCceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCCCH
Q 010355 148 YEAFESRMSTLNDVINALK-------------NPDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDV 214 (512)
Q Consensus 148 ~~~~~gR~~~l~~l~~~L~-------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~ 214 (512)
+..+.|-+..++.|.+.+. -...+-|.++|++|+|||+||+++++..... .+.++.+.-.+
T Consensus 180 ~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~-----~~~v~~s~l~s- 253 (437)
T 4b4t_L 180 FDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGAN-----FIFSPASGIVD- 253 (437)
T ss_dssp SGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCE-----EEEEEGGGTCC-
T ss_pred hhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCC-----EEEEehhhhcc-
Confidence 4556677776666655432 2345789999999999999999999987632 23344332111
Q ss_pred HHHHHHHHHHhCCCCCCCCchHHHHHHHHHHhCCCeEEEEEeCCCChh----------------h----hhhhCCCCCCC
Q 010355 215 KKIQGQIADKLGLKFYEESESGRARKLCERLKKEKKILVILDDIWTNL----------------D----LENVGIPFGVR 274 (512)
Q Consensus 215 ~~ll~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~----------------~----~~~l~~~~~~~ 274 (512)
. ........+..++.......+++|+||+++... . +..+.......
T Consensus 254 -------------k-~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~ 319 (437)
T 4b4t_L 254 -------------K-YIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLG 319 (437)
T ss_dssp -------------S-SSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTT
T ss_pred -------------c-cchHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCC
Confidence 0 001112234444544545679999999996321 0 11111111134
Q ss_pred CeEEEEEeCCcchhc-cccC---CccceecCCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCCh
Q 010355 275 GCRVLMTARSQDVLS-SKMD---CQNNFLIGVLNESEARDLFKKLVGDKIENNDLKSLAMNIVKACRGLP 340 (512)
Q Consensus 275 gs~iivTtR~~~v~~-~~~~---~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~GlP 340 (512)
+..||.||....... .... -...+.++..+.++-.++|+.++......... -...|++.+.|+-
T Consensus 320 ~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~--dl~~lA~~t~G~s 387 (437)
T 4b4t_L 320 QTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEF--DFEAAVKMSDGFN 387 (437)
T ss_dssp SSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCC--CHHHHHHTCCSCC
T ss_pred CeEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCCccc--CHHHHHHhCCCCC
Confidence 567777876654331 1111 23578888888888888888776432222211 1356778887753
No 49
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=98.40 E-value=1.7e-06 Score=84.55 Aligned_cols=165 Identities=17% Similarity=0.135 Sum_probs=93.3
Q ss_pred HHHHHHHhcCC--CceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCch
Q 010355 158 LNDVINALKNP--DVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIADKLGLKFYEESES 235 (512)
Q Consensus 158 l~~l~~~L~~~--~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~i~~~l~~~~~~~~~~ 235 (512)
...+..++... ....+.|+|++|+||||||+.+++..... -..++++++. .+...+...+...
T Consensus 23 ~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~~~~--~~~~~~i~~~------~~~~~~~~~~~~~------- 87 (324)
T 1l8q_A 23 YEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKR--GYRVIYSSAD------DFAQAMVEHLKKG------- 87 (324)
T ss_dssp HHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHHHT--TCCEEEEEHH------HHHHHHHHHHHHT-------
T ss_pred HHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHHHHC--CCEEEEEEHH------HHHHHHHHHHHcC-------
Confidence 34444444433 34678999999999999999999887532 2234555432 3333333332110
Q ss_pred HHHHHHHHHHhCCCeEEEEEeCCCChh---h-hhhhCCCC---CCCCeEEEEEeCCcchh-----c---cccCCccceec
Q 010355 236 GRARKLCERLKKEKKILVILDDIWTNL---D-LENVGIPF---GVRGCRVLMTARSQDVL-----S---SKMDCQNNFLI 300 (512)
Q Consensus 236 ~~~~~l~~~l~~~k~~LlVlDdv~~~~---~-~~~l~~~~---~~~gs~iivTtR~~~v~-----~---~~~~~~~~~~l 300 (512)
....+...+. ++.+|+||++.... . ...+...+ ...+..||+||...... . ........+.+
T Consensus 88 -~~~~~~~~~~--~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~~~L~sR~~~~~~i~l 164 (324)
T 1l8q_A 88 -TINEFRNMYK--SVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSRFEGGILVEI 164 (324)
T ss_dssp -CHHHHHHHHH--TCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHHHHHTSEEEEC
T ss_pred -cHHHHHHHhc--CCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhhhHhhhcccCceEEEe
Confidence 0122233333 36799999996532 1 11121111 13456788888654221 0 01122256899
Q ss_pred CCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChhHH
Q 010355 301 GVLNESEARDLFKKLVGDKIENNDLKSLAMNIVKACRGLPIAI 343 (512)
Q Consensus 301 ~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~GlPLai 343 (512)
.| +.++...++...+..... .--.+....|++.+ |.+-.+
T Consensus 165 ~~-~~~e~~~il~~~~~~~~~-~l~~~~l~~l~~~~-g~~r~l 204 (324)
T 1l8q_A 165 EL-DNKTRFKIIKEKLKEFNL-ELRKEVIDYLLENT-KNVREI 204 (324)
T ss_dssp CC-CHHHHHHHHHHHHHHTTC-CCCHHHHHHHHHHC-SSHHHH
T ss_pred CC-CHHHHHHHHHHHHHhcCC-CCCHHHHHHHHHhC-CCHHHH
Confidence 99 999999999887642111 11135677888888 776543
No 50
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=98.38 E-value=1.1e-06 Score=97.12 Aligned_cols=158 Identities=14% Similarity=0.192 Sum_probs=90.0
Q ss_pred cCccccccchHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHhhhhcCC-----CCeEEEEEeCCCCCHHHHHHH
Q 010355 146 KGYEAFESRMSTLNDVINALKNPDVHMIGAYGMAGVGKTMLVKEVARQAKADKL-----FDEVVYAEVSQRPDVKKIQGQ 220 (512)
Q Consensus 146 ~~~~~~~gR~~~l~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-----f~~~~wv~~~~~~~~~~ll~~ 220 (512)
....+++||+.++..++..|.....+.+.|+|++|+|||+||+.+++....... -..+++++++.-..
T Consensus 167 ~~ld~viGr~~~i~~l~~~l~~~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~------- 239 (854)
T 1qvr_A 167 GKLDPVIGRDEEIRRVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLA------- 239 (854)
T ss_dssp TCSCCCCSCHHHHHHHHHHHHCSSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC------------
T ss_pred CCCcccCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhc-------
Confidence 445678999999999999998766667899999999999999999988643111 12334443322110
Q ss_pred HHHHhCCCCCCCCchHHHHHHHHHHhC-CCeEEEEEeCCCChhh-------hhh---hCCCCCCCCeEEEEEeCCcch--
Q 010355 221 IADKLGLKFYEESESGRARKLCERLKK-EKKILVILDDIWTNLD-------LEN---VGIPFGVRGCRVLMTARSQDV-- 287 (512)
Q Consensus 221 i~~~l~~~~~~~~~~~~~~~l~~~l~~-~k~~LlVlDdv~~~~~-------~~~---l~~~~~~~gs~iivTtR~~~v-- 287 (512)
+.. ........+..+...+.. +++.+|+||++..... +.. +...+...+..+|.||.....
T Consensus 240 -----g~~-~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~~~~i~~I~at~~~~~~~ 313 (854)
T 1qvr_A 240 -----GAK-YRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALARGELRLIGATTLDEYRE 313 (854)
T ss_dssp ------------CHHHHHHHHHHHHHTTCSSEEEEECCC-------------------HHHHHTTCCCEEEEECHHHHHH
T ss_pred -----cCc-cchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccchHHHHHHHHHHHhCCCeEEEEecCchHHhh
Confidence 000 001112233444455543 3689999999975420 111 100011334556666553321
Q ss_pred ---hccccCCccceecCCCCHHHHHHHHHHHh
Q 010355 288 ---LSSKMDCQNNFLIGVLNESEARDLFKKLV 316 (512)
Q Consensus 288 ---~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~ 316 (512)
..........+.+.+++.++...++....
T Consensus 314 ~~~d~aL~rRf~~i~l~~p~~~e~~~iL~~~~ 345 (854)
T 1qvr_A 314 IEKDPALERRFQPVYVDEPTVEETISILRGLK 345 (854)
T ss_dssp HTTCTTTCSCCCCEEECCCCHHHHHHHHHHHH
T ss_pred hccCHHHHhCCceEEeCCCCHHHHHHHHHhhh
Confidence 11122333468999999999999997543
No 51
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.38 E-value=9.1e-06 Score=81.53 Aligned_cols=170 Identities=15% Similarity=0.165 Sum_probs=98.8
Q ss_pred ccccccchHHHHHHHHHhc-------------CCCceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCCCH
Q 010355 148 YEAFESRMSTLNDVINALK-------------NPDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDV 214 (512)
Q Consensus 148 ~~~~~gR~~~l~~l~~~L~-------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~ 214 (512)
...+.|-+..++.|.+.+. -...+-|.++|++|+|||+||+++++..... .+.++.+.-.+
T Consensus 208 ~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~-----fi~vs~s~L~s- 281 (467)
T 4b4t_H 208 YSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDAT-----FIRVIGSELVQ- 281 (467)
T ss_dssp CSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCE-----EEEEEGGGGCC-
T ss_pred HHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCC-----eEEEEhHHhhc-
Confidence 3456677777766655432 2356789999999999999999999987632 23343332110
Q ss_pred HHHHHHHHHHhCCCCCCCCchHHHHHHHHHHhCCCeEEEEEeCCCChh----------------h----hhhhCCCCCCC
Q 010355 215 KKIQGQIADKLGLKFYEESESGRARKLCERLKKEKKILVILDDIWTNL----------------D----LENVGIPFGVR 274 (512)
Q Consensus 215 ~~ll~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~----------------~----~~~l~~~~~~~ 274 (512)
. ........+..++.......+++|++|++.... . +..+.......
T Consensus 282 -------------k-~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~ 347 (467)
T 4b4t_H 282 -------------K-YVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRG 347 (467)
T ss_dssp -------------C-SSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTT
T ss_pred -------------c-cCCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCC
Confidence 0 001112234445555555679999999986331 0 11121111234
Q ss_pred CeEEEEEeCCcchhc----cccCCccceecCCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCC
Q 010355 275 GCRVLMTARSQDVLS----SKMDCQNNFLIGVLNESEARDLFKKLVGDKIENNDLKSLAMNIVKACRGL 339 (512)
Q Consensus 275 gs~iivTtR~~~v~~----~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~Gl 339 (512)
+..||.||....... +...-...+.++..+.++-.++|+.++......... -...|++.|.|.
T Consensus 348 ~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dv--dl~~LA~~T~Gf 414 (467)
T 4b4t_H 348 NIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGI--RWELISRLCPNS 414 (467)
T ss_dssp TEEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSC--CHHHHHHHCCSC
T ss_pred cEEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCCCC--CHHHHHHHCCCC
Confidence 556677776544321 111234678888888898899998877543322221 135677888875
No 52
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.37 E-value=3.5e-06 Score=84.57 Aligned_cols=171 Identities=15% Similarity=0.175 Sum_probs=97.3
Q ss_pred CccccccchHHHHHHHHHhc-------------CCCceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCCC
Q 010355 147 GYEAFESRMSTLNDVINALK-------------NPDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPD 213 (512)
Q Consensus 147 ~~~~~~gR~~~l~~l~~~L~-------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~ 213 (512)
.+..+.|-+..++.|.+.+. -...+-|.++|++|+|||.||+++++..... .+.++.+.-.+
T Consensus 179 t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~-----f~~v~~s~l~~ 253 (434)
T 4b4t_M 179 TYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNAT-----FLKLAAPQLVQ 253 (434)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCE-----EEEEEGGGGCS
T ss_pred ChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCC-----EEEEehhhhhh
Confidence 45667788877777765432 1346789999999999999999999987632 23343332110
Q ss_pred HHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHhCCCeEEEEEeCCCChh--------------------hhhhhCCCCCC
Q 010355 214 VKKIQGQIADKLGLKFYEESESGRARKLCERLKKEKKILVILDDIWTNL--------------------DLENVGIPFGV 273 (512)
Q Consensus 214 ~~~ll~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~--------------------~~~~l~~~~~~ 273 (512)
. ........+..++.......+++|++|++.... -+..+......
T Consensus 254 --------------~-~vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~ 318 (434)
T 4b4t_M 254 --------------M-YIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSD 318 (434)
T ss_dssp --------------S-CSSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSS
T ss_pred --------------c-ccchHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCC
Confidence 0 001112233444444444578999999984220 01112111113
Q ss_pred CCeEEEEEeCCcchhccc-c---CCccceecCCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCC
Q 010355 274 RGCRVLMTARSQDVLSSK-M---DCQNNFLIGVLNESEARDLFKKLVGDKIENNDLKSLAMNIVKACRGL 339 (512)
Q Consensus 274 ~gs~iivTtR~~~v~~~~-~---~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~Gl 339 (512)
.+..||.||......... . .-...+.++..+.++-.++|+.++......+.. -...|++.|.|.
T Consensus 319 ~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dv--dl~~lA~~t~G~ 386 (434)
T 4b4t_M 319 DRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDI--NWQELARSTDEF 386 (434)
T ss_dssp CSSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCC--CHHHHHHHCSSC
T ss_pred CCEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcC--CHHHHHHhCCCC
Confidence 455666677665433111 1 223578888888888888887766422211111 135677888775
No 53
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=98.32 E-value=8.5e-06 Score=89.07 Aligned_cols=158 Identities=18% Similarity=0.212 Sum_probs=95.5
Q ss_pred cCccccccchHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHhhhhcCC----CCeEEE-EEeCCCCCHHHHHHH
Q 010355 146 KGYEAFESRMSTLNDVINALKNPDVHMIGAYGMAGVGKTMLVKEVARQAKADKL----FDEVVY-AEVSQRPDVKKIQGQ 220 (512)
Q Consensus 146 ~~~~~~~gR~~~l~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----f~~~~w-v~~~~~~~~~~ll~~ 220 (512)
.....++||+.++..+...|.......+.|+|++|+|||+||+.++........ ....+| +.++.-
T Consensus 183 ~~~d~~iGr~~~i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l--------- 253 (758)
T 1r6b_X 183 GGIDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSL--------- 253 (758)
T ss_dssp TCSCCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC-----------
T ss_pred CCCCCccCCHHHHHHHHHHHhccCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHH---------
Confidence 345678999999999999998767778899999999999999999987643211 122222 221110
Q ss_pred HHHHhCCCCCCCCchHHHHHHHHHHhCCCeEEEEEeCCCCh----------hh-hhhhCCCCCCCCeEEEEEeCCcchh-
Q 010355 221 IADKLGLKFYEESESGRARKLCERLKKEKKILVILDDIWTN----------LD-LENVGIPFGVRGCRVLMTARSQDVL- 288 (512)
Q Consensus 221 i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~----------~~-~~~l~~~~~~~gs~iivTtR~~~v~- 288 (512)
+...............+...+...++.+|+||++... .. ...+...+...+.++|.+|......
T Consensus 254 ----~~~~~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~~~~~~~I~at~~~~~~~ 329 (758)
T 1r6b_X 254 ----LAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVIGSTTYQEFSN 329 (758)
T ss_dssp -----CCCCCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSSSCCCEEEEEECHHHHHC
T ss_pred ----hccccccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHhCCCeEEEEEeCchHHhh
Confidence 0000011122233445555555556799999999754 11 2223222234456677766543211
Q ss_pred -----ccccCCccceecCCCCHHHHHHHHHHHh
Q 010355 289 -----SSKMDCQNNFLIGVLNESEARDLFKKLV 316 (512)
Q Consensus 289 -----~~~~~~~~~~~l~~L~~~ea~~Lf~~~~ 316 (512)
.........+.+.+.+.++..+++....
T Consensus 330 ~~~~d~aL~~Rf~~i~v~~p~~~e~~~il~~l~ 362 (758)
T 1r6b_X 330 IFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_dssp CCCCTTSSGGGEEEEECCCCCHHHHHHHHHHHH
T ss_pred hhhcCHHHHhCceEEEcCCCCHHHHHHHHHHHH
Confidence 1111223468899999999988887654
No 54
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.32 E-value=1.2e-05 Score=79.82 Aligned_cols=171 Identities=18% Similarity=0.188 Sum_probs=97.7
Q ss_pred CccccccchHHHHHHHHHhc-------------CCCceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCCC
Q 010355 147 GYEAFESRMSTLNDVINALK-------------NPDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPD 213 (512)
Q Consensus 147 ~~~~~~gR~~~l~~l~~~L~-------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~ 213 (512)
.+..+.|-+..++.|.+.+. -...+-|.++|++|+|||.||+++++..... .+.++.+.-.
T Consensus 180 ~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~-----fi~v~~s~l~- 253 (437)
T 4b4t_I 180 SYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSAT-----FLRIVGSELI- 253 (437)
T ss_dssp CGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCE-----EEEEESGGGC-
T ss_pred cceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCC-----EEEEEHHHhh-
Confidence 35556677776666655432 1345789999999999999999999987632 2333332211
Q ss_pred HHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHhCCCeEEEEEeCCCChh----------------h----hhhhCCCCCC
Q 010355 214 VKKIQGQIADKLGLKFYEESESGRARKLCERLKKEKKILVILDDIWTNL----------------D----LENVGIPFGV 273 (512)
Q Consensus 214 ~~~ll~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~----------------~----~~~l~~~~~~ 273 (512)
.. ........+..++.......+++|+||+++... . +..+......
T Consensus 254 -------------sk-~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~ 319 (437)
T 4b4t_I 254 -------------QK-YLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDR 319 (437)
T ss_dssp -------------CS-SSSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCS
T ss_pred -------------hc-cCchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCC
Confidence 00 011112234445555555678999999985321 0 1111111113
Q ss_pred CCeEEEEEeCCcchhcc-cc---CCccceecCCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCC
Q 010355 274 RGCRVLMTARSQDVLSS-KM---DCQNNFLIGVLNESEARDLFKKLVGDKIENNDLKSLAMNIVKACRGL 339 (512)
Q Consensus 274 ~gs~iivTtR~~~v~~~-~~---~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~Gl 339 (512)
.+..||.||........ .. .-...+.++.-+.++-.++|..++......... -...|++.+.|.
T Consensus 320 ~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dv--dl~~LA~~T~Gf 387 (437)
T 4b4t_I 320 GDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDV--NLETLVTTKDDL 387 (437)
T ss_dssp SSEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSCC--CHHHHHHHCCSC
T ss_pred CCEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCCCcC--CHHHHHHhCCCC
Confidence 45667777766554311 11 122467888888888889998877543222211 135677788775
No 55
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=98.29 E-value=2.9e-06 Score=92.66 Aligned_cols=151 Identities=15% Similarity=0.200 Sum_probs=88.6
Q ss_pred CccccccchHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHhhhhcCC---C-Ce-EEEEEeCCCCCHHHHHHHH
Q 010355 147 GYEAFESRMSTLNDVINALKNPDVHMIGAYGMAGVGKTMLVKEVARQAKADKL---F-DE-VVYAEVSQRPDVKKIQGQI 221 (512)
Q Consensus 147 ~~~~~~gR~~~l~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~---f-~~-~~wv~~~~~~~~~~ll~~i 221 (512)
...+++||+.++..+...|......-+.|+|++|+|||++|+.+++....... . .+ ++.++.
T Consensus 178 ~ld~iiG~~~~i~~l~~~l~~~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~------------- 244 (758)
T 3pxi_A 178 SLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM------------- 244 (758)
T ss_dssp CSCCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC---------------
T ss_pred CCCCccCchHHHHHHHHHHhCCCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecc-------------
Confidence 45679999999999999998766677899999999999999999988632110 0 11 222222
Q ss_pred HHHhCCCCCCCCchHHHHHHHHHHhCCCeEEEEEeCCCChhhhhhhCCCCCCCCeEEEEEeCCcch------hccccCCc
Q 010355 222 ADKLGLKFYEESESGRARKLCERLKKEKKILVILDDIWTNLDLENVGIPFGVRGCRVLMTARSQDV------LSSKMDCQ 295 (512)
Q Consensus 222 ~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~~~~l~~~~~~~gs~iivTtR~~~v------~~~~~~~~ 295 (512)
+..... .....+..+...+...++.+|++| ........+...+.....++|.||..... ........
T Consensus 245 ----g~~~~G-~~e~~l~~~~~~~~~~~~~iLfiD--~~~~~~~~L~~~l~~~~v~~I~at~~~~~~~~~~~d~al~rRf 317 (758)
T 3pxi_A 245 ----GTKYRG-EFEDRLKKVMDEIRQAGNIILFID--AAIDASNILKPSLARGELQCIGATTLDEYRKYIEKDAALERRF 317 (758)
T ss_dssp -------------CTTHHHHHHHHHTCCCCEEEEC--C--------CCCTTSSSCEEEEECCTTTTHHHHTTCSHHHHSE
T ss_pred ----cccccc-hHHHHHHHHHHHHHhcCCEEEEEc--CchhHHHHHHHHHhcCCEEEEeCCChHHHHHHhhccHHHHhhC
Confidence 000000 011123444555555678999999 22222222322222445667766665441 11111233
Q ss_pred cceecCCCCHHHHHHHHHHHhC
Q 010355 296 NNFLIGVLNESEARDLFKKLVG 317 (512)
Q Consensus 296 ~~~~l~~L~~~ea~~Lf~~~~~ 317 (512)
..+.+.+.+.++...++.....
T Consensus 318 ~~i~v~~p~~~~~~~il~~~~~ 339 (758)
T 3pxi_A 318 QPIQVDQPSVDESIQILQGLRD 339 (758)
T ss_dssp EEEECCCCCHHHHHHHHHHTTT
T ss_pred cEEEeCCCCHHHHHHHHHHHHH
Confidence 5689999999999999987653
No 56
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=98.26 E-value=2.6e-05 Score=73.27 Aligned_cols=179 Identities=19% Similarity=0.224 Sum_probs=96.5
Q ss_pred cCccccccchHHHHHHHHH---hcC---------CCceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCCC
Q 010355 146 KGYEAFESRMSTLNDVINA---LKN---------PDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPD 213 (512)
Q Consensus 146 ~~~~~~~gR~~~l~~l~~~---L~~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~ 213 (512)
.....++|.+..++.|... +.. ...+-+.|+|++|+||||||+.+++.... . .+.++.+.-..
T Consensus 9 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~--~---~~~i~~~~~~~ 83 (257)
T 1lv7_A 9 TTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKV--P---FFTISGSDFVE 83 (257)
T ss_dssp CCGGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTC--C---EEEECSCSSTT
T ss_pred CCHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCC--C---EEEEeHHHHHH
Confidence 3455678887766655443 321 12356889999999999999999987642 2 23333222110
Q ss_pred HHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHhCCCeEEEEEeCCCChh----------------hhhh----hCCCCCC
Q 010355 214 VKKIQGQIADKLGLKFYEESESGRARKLCERLKKEKKILVILDDIWTNL----------------DLEN----VGIPFGV 273 (512)
Q Consensus 214 ~~~ll~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~----------------~~~~----l~~~~~~ 273 (512)
... .........+.+......+.++++|++.... .+.. +......
T Consensus 84 --------------~~~-~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~ 148 (257)
T 1lv7_A 84 --------------MFV-GVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGN 148 (257)
T ss_dssp --------------SCC-CCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSS
T ss_pred --------------Hhh-hhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccC
Confidence 000 1112233444444444567899999983210 0111 1111123
Q ss_pred CCeEEEEEeCCcchh-cccc---CCccceecCCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCC-ChhHHHHH
Q 010355 274 RGCRVLMTARSQDVL-SSKM---DCQNNFLIGVLNESEARDLFKKLVGDKIENNDLKSLAMNIVKACRG-LPIAIVTI 346 (512)
Q Consensus 274 ~gs~iivTtR~~~v~-~~~~---~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~G-lPLai~~i 346 (512)
.+..||.||...... .... .-...+.+.+.+.++-.+++..++......+.. ....++..+.| .+--|..+
T Consensus 149 ~~~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l~~~~--~~~~la~~~~G~~~~dl~~l 224 (257)
T 1lv7_A 149 EGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDI--DAAIIARGTPGFSGADLANL 224 (257)
T ss_dssp SCEEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTC--CHHHHHHTCTTCCHHHHHHH
T ss_pred CCEEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCCCccc--cHHHHHHHcCCCCHHHHHHH
Confidence 456677777655422 1111 112467777888888888888776432221111 13456777777 66555443
No 57
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.26 E-value=1.2e-05 Score=80.58 Aligned_cols=171 Identities=18% Similarity=0.194 Sum_probs=93.0
Q ss_pred CccccccchHHHHHHHHHhc-------------CCCceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCCC
Q 010355 147 GYEAFESRMSTLNDVINALK-------------NPDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPD 213 (512)
Q Consensus 147 ~~~~~~gR~~~l~~l~~~L~-------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~ 213 (512)
....+.|-+..++.|.+.+. -...+-|.++|++|+|||+||+++++..... .+.++.+.-.+
T Consensus 170 ~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~-----~~~v~~~~l~~ 244 (428)
T 4b4t_K 170 TYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAA-----FIRVNGSEFVH 244 (428)
T ss_dssp CGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCE-----EEEEEGGGTCC
T ss_pred CHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCC-----eEEEecchhhc
Confidence 34566777777766665442 1345779999999999999999999987632 23344332111
Q ss_pred HHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHhCCCeEEEEEeCCCChh----------------hhh----hhCCCCCC
Q 010355 214 VKKIQGQIADKLGLKFYEESESGRARKLCERLKKEKKILVILDDIWTNL----------------DLE----NVGIPFGV 273 (512)
Q Consensus 214 ~~~ll~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~----------------~~~----~l~~~~~~ 273 (512)
. ........+..++...+...+++|++|++.... .+. .+......
T Consensus 245 --------------~-~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~ 309 (428)
T 4b4t_K 245 --------------K-YLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQS 309 (428)
T ss_dssp --------------S-SCSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSS
T ss_pred --------------c-ccchhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCC
Confidence 0 001112234445555555678999999984210 011 11111124
Q ss_pred CCeEEEEEeCCcchhc-ccc---CCccceecCCCCH-HHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCC
Q 010355 274 RGCRVLMTARSQDVLS-SKM---DCQNNFLIGVLNE-SEARDLFKKLVGDKIENNDLKSLAMNIVKACRGL 339 (512)
Q Consensus 274 ~gs~iivTtR~~~v~~-~~~---~~~~~~~l~~L~~-~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~Gl 339 (512)
.+..||.||....... ... .-...+.+..++. .+-..+|..++......++. -...|++.|.|.
T Consensus 310 ~~v~vI~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~~~~--dl~~lA~~t~G~ 378 (428)
T 4b4t_K 310 TNVKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPEA--DLDSLIIRNDSL 378 (428)
T ss_dssp CSEEEEEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBCTTC--CHHHHHHHTTTC
T ss_pred CCEEEEEecCChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCCccc--CHHHHHHHCCCC
Confidence 4567777886654321 111 1224677765654 44555666555322211111 135677788775
No 58
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=98.12 E-value=2.6e-05 Score=75.07 Aligned_cols=143 Identities=15% Similarity=0.086 Sum_probs=87.1
Q ss_pred cchHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHhhhhc-CCCCeEEEEEeCC-CCCHHHHHHHHHHHhCCCCC
Q 010355 153 SRMSTLNDVINALKNPDVHMIGAYGMAGVGKTMLVKEVARQAKAD-KLFDEVVYAEVSQ-RPDVKKIQGQIADKLGLKFY 230 (512)
Q Consensus 153 gR~~~l~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~~f~~~~wv~~~~-~~~~~~ll~~i~~~l~~~~~ 230 (512)
|.+..+..|...+..+..+.+.++|++|+||||+|..+++..... .....+.++..+. ..+... .+.++..+...+.
T Consensus 1 g~~~~~~~L~~~i~~~~~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~~~~id~-ir~li~~~~~~p~ 79 (305)
T 2gno_A 1 GAKDQLETLKRIIEKSEGISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGENIGIDD-IRTIKDFLNYSPE 79 (305)
T ss_dssp ---CHHHHHHHHHHTCSSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSSCBCHHH-HHHHHHHHTSCCS
T ss_pred ChHHHHHHHHHHHHCCCCcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcCCCCHHH-HHHHHHHHhhccc
Confidence 344566777777776667899999999999999999998753211 1122335555442 233333 2334444332111
Q ss_pred CCCchHHHHHHHHHHhCCCeEEEEEeCCCCh--hhhhhh----CCCCCCCCeEEEEEeCCcc-hhccccCCccceecCCC
Q 010355 231 EESESGRARKLCERLKKEKKILVILDDIWTN--LDLENV----GIPFGVRGCRVLMTARSQD-VLSSKMDCQNNFLIGVL 303 (512)
Q Consensus 231 ~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~--~~~~~l----~~~~~~~gs~iivTtR~~~-v~~~~~~~~~~~~l~~L 303 (512)
.+++-++|+|++... ...+.+ -.| .+.+.+|++|.+.. +... .... .+++.++
T Consensus 80 ----------------~~~~kvviIdead~lt~~a~naLLk~LEep--~~~t~fIl~t~~~~kl~~t-I~SR-~~~f~~l 139 (305)
T 2gno_A 80 ----------------LYTRKYVIVHDCERMTQQAANAFLKALEEP--PEYAVIVLNTRRWHYLLPT-IKSR-VFRVVVN 139 (305)
T ss_dssp ----------------SSSSEEEEETTGGGBCHHHHHHTHHHHHSC--CTTEEEEEEESCGGGSCHH-HHTT-SEEEECC
T ss_pred ----------------cCCceEEEeccHHHhCHHHHHHHHHHHhCC--CCCeEEEEEECChHhChHH-HHce-eEeCCCC
Confidence 145678999999643 223322 222 45677777775543 2222 2223 8999999
Q ss_pred CHHHHHHHHHHHh
Q 010355 304 NESEARDLFKKLV 316 (512)
Q Consensus 304 ~~~ea~~Lf~~~~ 316 (512)
+.++....+.+.+
T Consensus 140 ~~~~i~~~L~~~~ 152 (305)
T 2gno_A 140 VPKEFRDLVKEKI 152 (305)
T ss_dssp CCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHh
Confidence 9999999998876
No 59
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=98.11 E-value=5.3e-05 Score=77.80 Aligned_cols=177 Identities=14% Similarity=0.177 Sum_probs=101.1
Q ss_pred ccccccchHHHHHHHHHhc-------------CCCceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCCCH
Q 010355 148 YEAFESRMSTLNDVINALK-------------NPDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDV 214 (512)
Q Consensus 148 ~~~~~gR~~~l~~l~~~L~-------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~ 214 (512)
...++|....+++|.+++. ....+.|.|+|++|+|||+||+.+++... . ..+.++++
T Consensus 203 ~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~--~---~fv~vn~~----- 272 (489)
T 3hu3_A 203 YDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETG--A---FFFLINGP----- 272 (489)
T ss_dssp GGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCS--S---EEEEEEHH-----
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhC--C---CEEEEEch-----
Confidence 4568899988888877664 23456799999999999999999988753 1 22334321
Q ss_pred HHHHHHHHHHhCCCCCCCCchHHHHHHHHHHhCCCeEEEEEeCCCChh----------------h-hhhhCCCCCCCCeE
Q 010355 215 KKIQGQIADKLGLKFYEESESGRARKLCERLKKEKKILVILDDIWTNL----------------D-LENVGIPFGVRGCR 277 (512)
Q Consensus 215 ~~ll~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~----------------~-~~~l~~~~~~~gs~ 277 (512)
.+ ...+ . .........++.....+++.+|+||++.... . +..+.......+.+
T Consensus 273 -~l----~~~~----~-g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~ 342 (489)
T 3hu3_A 273 -EI----MSKL----A-GESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVI 342 (489)
T ss_dssp -HH----HTSC----T-THHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEE
T ss_pred -Hh----hhhh----c-chhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceE
Confidence 11 1111 0 0111223334444444678999999983210 0 11111111134566
Q ss_pred EEEEeCCcchh-cccc---CCccceecCCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCC-hhHHHHH
Q 010355 278 VLMTARSQDVL-SSKM---DCQNNFLIGVLNESEARDLFKKLVGDKIENNDLKSLAMNIVKACRGL-PIAIVTI 346 (512)
Q Consensus 278 iivTtR~~~v~-~~~~---~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~Gl-PLai~~i 346 (512)
||.||...... .... .-...+.+.+.+.++-.++|..++........ .....++..+.|. +-.|..+
T Consensus 343 vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~~~--~~l~~la~~t~g~s~~dL~~L 414 (489)
T 3hu3_A 343 VMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADD--VDLEQVANETHGHVGADLAAL 414 (489)
T ss_dssp EEEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBCTT--CCHHHHHHTCTTCCHHHHHHH
T ss_pred EEEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCcch--hhHHHHHHHccCCcHHHHHHH
Confidence 77777655321 1111 12246889999999999999988753322111 1134677777775 5445444
No 60
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.10 E-value=6.6e-06 Score=74.23 Aligned_cols=112 Identities=14% Similarity=0.108 Sum_probs=62.4
Q ss_pred HHHHHHHHHhcCC----CceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCC
Q 010355 156 STLNDVINALKNP----DVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIADKLGLKFYE 231 (512)
Q Consensus 156 ~~l~~l~~~L~~~----~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~i~~~l~~~~~~ 231 (512)
..+..+..++... ..+.+.|+|++|+|||+||+.+++..... ...++|++++ .+...+...+..
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~--~~~~~~~~~~------~~~~~~~~~~~~---- 103 (202)
T 2w58_A 36 KAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANELAKR--NVSSLIVYVP------ELFRELKHSLQD---- 103 (202)
T ss_dssp HHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHHHTT--TCCEEEEEHH------HHHHHHHHC-------
T ss_pred HHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEEEhH------HHHHHHHHHhcc----
Confidence 3445555555522 12789999999999999999999887632 3456666543 444444433211
Q ss_pred CCchHHHHHHHHHHhCCCeEEEEEeCCCCh--hhhhhh--CC-CCC---CCCeEEEEEeCCc
Q 010355 232 ESESGRARKLCERLKKEKKILVILDDIWTN--LDLENV--GI-PFG---VRGCRVLMTARSQ 285 (512)
Q Consensus 232 ~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~--~~~~~l--~~-~~~---~~gs~iivTtR~~ 285 (512)
.. ...+...+.. .-+||||+++.. ..|..- .. .+. ..+.++|+||...
T Consensus 104 ~~----~~~~~~~~~~--~~~lilDei~~~~~~~~~~~~ll~~~l~~~~~~~~~~i~tsn~~ 159 (202)
T 2w58_A 104 QT----MNEKLDYIKK--VPVLMLDDLGAEAMSSWVRDDVFGPILQYRMFENLPTFFTSNFD 159 (202)
T ss_dssp CC----CHHHHHHHHH--SSEEEEEEECCC---CCGGGTTHHHHHHHHHHTTCCEEEEESSC
T ss_pred ch----HHHHHHHhcC--CCEEEEcCCCCCcCCHHHHHHHHHHHHHHHHhCCCCEEEEcCCC
Confidence 11 1223334432 249999999542 222211 00 011 2456788888754
No 61
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.05 E-value=4e-06 Score=74.24 Aligned_cols=115 Identities=15% Similarity=0.090 Sum_probs=64.1
Q ss_pred chHHHHHHHHHhcC---CCceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCC
Q 010355 154 RMSTLNDVINALKN---PDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIADKLGLKFY 230 (512)
Q Consensus 154 R~~~l~~l~~~L~~---~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~i~~~l~~~~~ 230 (512)
+...+..+..++.+ .....+.|+|++|+|||||++.++........+ .+++++ ..+++..+.........
T Consensus 19 ~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~-~~~~~~------~~~~~~~~~~~~~~~~~ 91 (180)
T 3ec2_A 19 QNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGI-RGYFFD------TKDLIFRLKHLMDEGKD 91 (180)
T ss_dssp HHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCC-CCCEEE------HHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCC-eEEEEE------HHHHHHHHHHHhcCchH
Confidence 44455555555542 234789999999999999999999887522222 233443 34445444433321110
Q ss_pred CCCchHHHHHHHHHHhCCCeEEEEEeCCCC--hhhhh-----hhCCCCCCCCeEEEEEeCCc
Q 010355 231 EESESGRARKLCERLKKEKKILVILDDIWT--NLDLE-----NVGIPFGVRGCRVLMTARSQ 285 (512)
Q Consensus 231 ~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~--~~~~~-----~l~~~~~~~gs~iivTtR~~ 285 (512)
. .+...+. ++-+||||+++. ...|. .+.......|..+|+||...
T Consensus 92 ----~----~~~~~~~--~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~ 143 (180)
T 3ec2_A 92 ----T----KFLKTVL--NSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYS 143 (180)
T ss_dssp ----S----HHHHHHH--TCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCC
T ss_pred ----H----HHHHHhc--CCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 0 2333343 467999999973 22222 11111113567888888754
No 62
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=98.05 E-value=2.8e-06 Score=72.39 Aligned_cols=46 Identities=15% Similarity=0.211 Sum_probs=35.5
Q ss_pred ccccchHHHHHHHHHhc--CCCceEEEEEcCCCCcHHHHHHHHHHhhh
Q 010355 150 AFESRMSTLNDVINALK--NPDVHMIGAYGMAGVGKTMLVKEVARQAK 195 (512)
Q Consensus 150 ~~~gR~~~l~~l~~~L~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 195 (512)
.++|+...+.++...+. ......|.|+|.+|+|||+||+.+++...
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~~ 49 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFGR 49 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSST
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhCC
Confidence 47888888888887764 23335578999999999999999988653
No 63
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=98.01 E-value=0.00016 Score=73.73 Aligned_cols=197 Identities=17% Similarity=0.233 Sum_probs=106.7
Q ss_pred ccccccchHHHHHHHHH---hcC---------CCceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCCCHH
Q 010355 148 YEAFESRMSTLNDVINA---LKN---------PDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVK 215 (512)
Q Consensus 148 ~~~~~gR~~~l~~l~~~---L~~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 215 (512)
...++|.+..+.+|.+. +.. .-.+-|.|+|++|+|||+||+.++..... . .+.++.+.....
T Consensus 15 f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~--~---f~~is~~~~~~~- 88 (476)
T 2ce7_A 15 FKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANV--P---FFHISGSDFVEL- 88 (476)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTC--C---EEEEEGGGTTTC-
T ss_pred HHHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCC--C---eeeCCHHHHHHH-
Confidence 45677877765555443 322 12345889999999999999999987642 1 233443322110
Q ss_pred HHHHHHHHHhCCCCCCCCchHHHHHHHHHHhCCCeEEEEEeCCCChh----------------hhhhhCCC---C-CCCC
Q 010355 216 KIQGQIADKLGLKFYEESESGRARKLCERLKKEKKILVILDDIWTNL----------------DLENVGIP---F-GVRG 275 (512)
Q Consensus 216 ~ll~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~----------------~~~~l~~~---~-~~~g 275 (512)
+ . .........++.......+++|+||++.... .+..+... + ...+
T Consensus 89 ---------~----~-g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~ 154 (476)
T 2ce7_A 89 ---------F----V-GVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEG 154 (476)
T ss_dssp ---------C----T-THHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGT
T ss_pred ---------H----h-cccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCC
Confidence 0 0 0011223344444444578999999985320 11222110 1 1346
Q ss_pred eEEEEEeCCcchhc-cccC---CccceecCCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChh-HHHHHHH--
Q 010355 276 CRVLMTARSQDVLS-SKMD---CQNNFLIGVLNESEARDLFKKLVGDKIENNDLKSLAMNIVKACRGLPI-AIVTIAR-- 348 (512)
Q Consensus 276 s~iivTtR~~~v~~-~~~~---~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~GlPL-ai~~ia~-- 348 (512)
..||.||....... .... -...+.+.+.+..+-.++|..++......+.. ....|++.+.|+.- -|..+..
T Consensus 155 viVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~~~v--~l~~la~~t~G~sgadL~~lv~~A 232 (476)
T 2ce7_A 155 IIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDV--NLEIIAKRTPGFVGADLENLVNEA 232 (476)
T ss_dssp EEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTC--CHHHHHHTCTTCCHHHHHHHHHHH
T ss_pred EEEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCcchh--hHHHHHHhcCCCcHHHHHHHHHHH
Confidence 67777777654331 1111 22377888888888888888777533222211 13457888888772 2322211
Q ss_pred -Hhc---cC---CHHHHHHHHHHhc
Q 010355 349 -ALR---NK---NTFEWKSALRELT 366 (512)
Q Consensus 349 -~L~---~~---~~~~w~~~l~~l~ 366 (512)
.+. ++ +...+...+....
T Consensus 233 al~A~~~~~~~I~~~dl~~al~~v~ 257 (476)
T 2ce7_A 233 ALLAAREGRDKITMKDFEEAIDRVI 257 (476)
T ss_dssp HHHHHHTTCSSBCHHHHHHHHHHHC
T ss_pred HHHHHHcCCCeecHHHHHHHHHHHh
Confidence 111 11 5666777776654
No 64
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.97 E-value=0.0002 Score=69.94 Aligned_cols=192 Identities=17% Similarity=0.146 Sum_probs=103.3
Q ss_pred cCccccccchHHHHHHHHHhcC-----CCceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCCCHHHHHHH
Q 010355 146 KGYEAFESRMSTLNDVINALKN-----PDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQ 220 (512)
Q Consensus 146 ~~~~~~~gR~~~l~~l~~~L~~-----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~ 220 (512)
.....++|+...+..+...+.. .....++|+|++|+||||||+.++...... | ...+.+-......
T Consensus 22 ~~l~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~--~---~~~sg~~~~~~~~---- 92 (334)
T 1in4_A 22 KSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTN--I---HVTSGPVLVKQGD---- 92 (334)
T ss_dssp SSGGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCC--E---EEEETTTCCSHHH----
T ss_pred ccHHHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCC--E---EEEechHhcCHHH----
Confidence 4456678888777777665542 234679999999999999999999876421 1 1111111111111
Q ss_pred HHHHhCCCCCCCCchHHHHHHHHHHhCCCeEEEEEeCCCChh--hhhhh-------CCC----CC---------CCCeEE
Q 010355 221 IADKLGLKFYEESESGRARKLCERLKKEKKILVILDDIWTNL--DLENV-------GIP----FG---------VRGCRV 278 (512)
Q Consensus 221 i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~--~~~~l-------~~~----~~---------~~gs~i 278 (512)
+..+...+ .++.++++|++.... ..+.+ ... .. .+...+
T Consensus 93 -----------------l~~~~~~~--~~~~v~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~l 153 (334)
T 1in4_A 93 -----------------MAAILTSL--ERGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTL 153 (334)
T ss_dssp -----------------HHHHHHHC--CTTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------CCCEE
T ss_pred -----------------HHHHHHHc--cCCCEEEEcchhhcCHHHHHHHHHHHHhcccceeeccCcccccccccCCCeEE
Confidence 11111122 134567778775321 11111 000 00 011223
Q ss_pred EE-EeCCcchhccccC-CccceecCCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChhHHHHHHHHh------
Q 010355 279 LM-TARSQDVLSSKMD-CQNNFLIGVLNESEARDLFKKLVGDKIENNDLKSLAMNIVKACRGLPIAIVTIARAL------ 350 (512)
Q Consensus 279 iv-TtR~~~v~~~~~~-~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~GlPLai~~ia~~L------ 350 (512)
+. |++...+...... ....+.+++.+.++..+++.+.+..... .--.+.+..|++.+.|.|-.+..+...+
T Consensus 154 i~at~~~~~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~~~~-~~~~~~~~~ia~~~~G~~R~a~~ll~~~~~~a~~ 232 (334)
T 1in4_A 154 VGATTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMDV-EIEDAAAEMIAKRSRGTPRIAIRLTKRVRDMLTV 232 (334)
T ss_dssp EEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTC-CBCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHH
T ss_pred EEecCCcccCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHHcCC-CcCHHHHHHHHHhcCCChHHHHHHHHHHHHHHHH
Confidence 33 3333222111111 1235789999999999999887632111 1124568899999999997654443322
Q ss_pred cc--C-CHHHHHHHHHHhc
Q 010355 351 RN--K-NTFEWKSALRELT 366 (512)
Q Consensus 351 ~~--~-~~~~w~~~l~~l~ 366 (512)
.+ . +......++..+.
T Consensus 233 ~~~~~It~~~v~~al~~~~ 251 (334)
T 1in4_A 233 VKADRINTDIVLKTMEVLN 251 (334)
T ss_dssp HTCSSBCHHHHHHHHHHHT
T ss_pred cCCCCcCHHHHHHHHHHhC
Confidence 11 2 6666777777764
No 65
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.97 E-value=2.8e-05 Score=75.10 Aligned_cols=105 Identities=15% Similarity=0.206 Sum_probs=59.8
Q ss_pred ccccchHHHHHHHHHhcCC---------CceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCCCHHHHHHH
Q 010355 150 AFESRMSTLNDVINALKNP---------DVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQ 220 (512)
Q Consensus 150 ~~~gR~~~l~~l~~~L~~~---------~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~ 220 (512)
.++|....++.|...+... ....+.|+|++|+|||+||+.++...... -...+.++++...... ....
T Consensus 18 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~--~~~~~~~~~~~~~~~~-~~~~ 94 (311)
T 4fcw_A 18 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDT--EEAMIRIDMTEYMEKH-AVSR 94 (311)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSC--GGGEEEEEGGGCCSTT-HHHH
T ss_pred hcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCC--CcceEEeecccccccc-cHHH
Confidence 4678888888777766521 23589999999999999999999876421 2234556655432221 1112
Q ss_pred HHHHhCCCCCCCCchHHHHHHHHHHhCCCeEEEEEeCCCCh
Q 010355 221 IADKLGLKFYEESESGRARKLCERLKKEKKILVILDDIWTN 261 (512)
Q Consensus 221 i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~ 261 (512)
+ +|......... ....+...+......+|+||++...
T Consensus 95 l---~g~~~~~~~~~-~~~~~~~~~~~~~~~vl~lDEi~~l 131 (311)
T 4fcw_A 95 L---IGAPPGYVGYE-EGGQLTEAVRRRPYSVILFDAIEKA 131 (311)
T ss_dssp H---HCCCTTSTTTT-TCCHHHHHHHHCSSEEEEEETGGGS
T ss_pred h---cCCCCcccccc-ccchHHHHHHhCCCeEEEEeChhhc
Confidence 2 22221111000 0012333444345579999999643
No 66
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.93 E-value=2.7e-05 Score=75.13 Aligned_cols=46 Identities=28% Similarity=0.313 Sum_probs=36.9
Q ss_pred ccccchHHHHHHHHHhcC--------------CCceEEEEEcCCCCcHHHHHHHHHHhhh
Q 010355 150 AFESRMSTLNDVINALKN--------------PDVHMIGAYGMAGVGKTMLVKEVARQAK 195 (512)
Q Consensus 150 ~~~gR~~~l~~l~~~L~~--------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 195 (512)
.++|++..+..|...+.. ...+.+.|+|++|+|||+||+.+++...
T Consensus 16 ~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~ 75 (310)
T 1ofh_A 16 HIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLAN 75 (310)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred hcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 478998888888766642 2346788999999999999999998764
No 67
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=97.86 E-value=1.2e-05 Score=76.07 Aligned_cols=150 Identities=19% Similarity=0.227 Sum_probs=79.3
Q ss_pred ccccccchHHHHHHHHHhc---C---------CCceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCCCHH
Q 010355 148 YEAFESRMSTLNDVINALK---N---------PDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVK 215 (512)
Q Consensus 148 ~~~~~gR~~~l~~l~~~L~---~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 215 (512)
...++|.+..++.|...+. . ...+.+.|+|++|+|||+||+.+++.... .|- .+..+.-...
T Consensus 10 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~--~~~---~v~~~~~~~~- 83 (268)
T 2r62_A 10 FKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHV--PFF---SMGGSSFIEM- 83 (268)
T ss_dssp STTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTC--CCC---CCCSCTTTTS-
T ss_pred HHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCC--CEE---EechHHHHHh-
Confidence 4567787766655554432 1 22345789999999999999999987652 221 1111111000
Q ss_pred HHHHHHHHHhCCCCCCCCchHHHHHHHHHHhCCCeEEEEEeCCCChh-----------------hhhhhCCCCC-----C
Q 010355 216 KIQGQIADKLGLKFYEESESGRARKLCERLKKEKKILVILDDIWTNL-----------------DLENVGIPFG-----V 273 (512)
Q Consensus 216 ~ll~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~-----------------~~~~l~~~~~-----~ 273 (512)
..+.. ... ...++......++.+|+||++.... .+..+...+. .
T Consensus 84 --------~~~~~--~~~----~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~ 149 (268)
T 2r62_A 84 --------FVGLG--ASR----VRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSEN 149 (268)
T ss_dssp --------CSSSC--SSS----SSTTHHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSCSC
T ss_pred --------hcchH--HHH----HHHHHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcccCC
Confidence 00110 000 1112222222467899999995321 1222211111 1
Q ss_pred CCeEEEEEeCCcchhc-ccc---CCccceecCCCCHHHHHHHHHHHhC
Q 010355 274 RGCRVLMTARSQDVLS-SKM---DCQNNFLIGVLNESEARDLFKKLVG 317 (512)
Q Consensus 274 ~gs~iivTtR~~~v~~-~~~---~~~~~~~l~~L~~~ea~~Lf~~~~~ 317 (512)
....||.||....... ... .-...+.+.+.+.++-.+++...+.
T Consensus 150 ~~v~vi~ttn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~ 197 (268)
T 2r62_A 150 APVIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIK 197 (268)
T ss_dssp SCCEEEECBSCCTTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTS
T ss_pred CCEEEEEecCCchhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHh
Confidence 2245666776553221 111 1225678888899999999987764
No 68
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.84 E-value=7.4e-05 Score=80.67 Aligned_cols=171 Identities=14% Similarity=0.195 Sum_probs=94.8
Q ss_pred ccccccchHHHHHHHHHh----cC---------CCceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCCCH
Q 010355 148 YEAFESRMSTLNDVINAL----KN---------PDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDV 214 (512)
Q Consensus 148 ~~~~~gR~~~l~~l~~~L----~~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~ 214 (512)
...+.|-+..+++|.+++ .. ...+-|.++|++|+|||+||+.+++.... ..+.|+.+.
T Consensus 203 ~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~-----~~~~v~~~~---- 273 (806)
T 3cf2_A 203 YDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGA-----FFFLINGPE---- 273 (806)
T ss_dssp GGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTC-----EEEEEEHHH----
T ss_pred hhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCC-----eEEEEEhHH----
Confidence 344556665555555443 21 23578999999999999999999987652 233443321
Q ss_pred HHHHHHHHHHhCCCCCCCCchHHHHHHHHHHhCCCeEEEEEeCCCChh-------------hhhhhCC---CCC-CCCeE
Q 010355 215 KKIQGQIADKLGLKFYEESESGRARKLCERLKKEKKILVILDDIWTNL-------------DLENVGI---PFG-VRGCR 277 (512)
Q Consensus 215 ~~ll~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~-------------~~~~l~~---~~~-~~gs~ 277 (512)
+... ........+..++.......+++|+||++.... ....+.. .+. ..+..
T Consensus 274 ------l~sk-----~~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~ 342 (806)
T 3cf2_A 274 ------IMSK-----LAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVI 342 (806)
T ss_dssp ------HHSS-----CTTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEE
T ss_pred ------hhcc-----cchHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEE
Confidence 1110 011122234455555555679999999985321 0111110 011 33455
Q ss_pred EEEEeCCcchhcc-cc---CCccceecCCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCCh
Q 010355 278 VLMTARSQDVLSS-KM---DCQNNFLIGVLNESEARDLFKKLVGDKIENNDLKSLAMNIVKACRGLP 340 (512)
Q Consensus 278 iivTtR~~~v~~~-~~---~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~GlP 340 (512)
||.||........ .. .-...+.+...+..+-.++|..++......... -...|++++.|.-
T Consensus 343 VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~dv--dl~~lA~~T~Gfs 407 (806)
T 3cf2_A 343 VMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDV--DLEQVANETHGHV 407 (806)
T ss_dssp EEEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECTTC--CHHHHHHHCCSCC
T ss_pred EEEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCCccc--CHHHHHHhcCCCC
Confidence 6666665433211 11 223578888888888888988776532222111 1456778888764
No 69
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=97.78 E-value=0.0002 Score=73.18 Aligned_cols=48 Identities=17% Similarity=0.138 Sum_probs=36.5
Q ss_pred ccccccchHHHHHHHH---HhcCC--CceEEEEEcCCCCcHHHHHHHHHHhhh
Q 010355 148 YEAFESRMSTLNDVIN---ALKNP--DVHMIGAYGMAGVGKTMLVKEVARQAK 195 (512)
Q Consensus 148 ~~~~~gR~~~l~~l~~---~L~~~--~~~vi~I~G~gGiGKTtLa~~v~~~~~ 195 (512)
...++|.+..++.+.. ++..+ ..+.+.++|++|+|||+||+.+++...
T Consensus 36 ~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~l~ 88 (456)
T 2c9o_A 36 ASGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQELG 88 (456)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred hhhccCHHHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHHHHHHHhC
Confidence 4678899887765444 33332 235789999999999999999998765
No 70
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.77 E-value=0.00032 Score=65.50 Aligned_cols=147 Identities=20% Similarity=0.212 Sum_probs=76.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHhCCCeE
Q 010355 172 MIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIADKLGLKFYEESESGRARKLCERLKKEKKI 251 (512)
Q Consensus 172 vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~ 251 (512)
-+.|+|++|+|||||++.++.... ...+.++.. .+ .... . ......+..+.+......+.
T Consensus 51 g~ll~G~~G~GKTtl~~~i~~~~~-----~~~i~~~~~------~~----~~~~-~----~~~~~~i~~~~~~~~~~~~~ 110 (254)
T 1ixz_A 51 GVLLVGPPGVGKTHLARAVAGEAR-----VPFITASGS------DF----VEMF-V----GVGAARVRDLFETAKRHAPC 110 (254)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTT-----CCEEEEEHH------HH----HHSC-T----THHHHHHHHHHHHHTTSSSE
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC-----CCEEEeeHH------HH----HHHH-h----hHHHHHHHHHHHHHHhcCCe
Confidence 389999999999999999998764 123333321 11 1100 0 00111233444444334578
Q ss_pred EEEEeCCCChh----------------hhhhh----CCCCCCCCeEEEEEeCCcchhcc-cc---CCccceecCCCCHHH
Q 010355 252 LVILDDIWTNL----------------DLENV----GIPFGVRGCRVLMTARSQDVLSS-KM---DCQNNFLIGVLNESE 307 (512)
Q Consensus 252 LlVlDdv~~~~----------------~~~~l----~~~~~~~gs~iivTtR~~~v~~~-~~---~~~~~~~l~~L~~~e 307 (512)
++++|++.... ....+ ..........++.||........ .. .-...+.+...+.++
T Consensus 111 i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~ 190 (254)
T 1ixz_A 111 IVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKG 190 (254)
T ss_dssp EEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTTCCEEEEEEESCGGGSCGGGGSTTSSCEEEECCSCCHHH
T ss_pred EEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCCCCCEEEEEccCCchhCCHHHcCCCcCCeEEeeCCcCHHH
Confidence 99999984211 01111 00001223445556665544311 11 123467888888888
Q ss_pred HHHHHHHHhCCCCCCchhHHHHHHHHHHcCCCh
Q 010355 308 ARDLFKKLVGDKIENNDLKSLAMNIVKACRGLP 340 (512)
Q Consensus 308 a~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~GlP 340 (512)
-.+++...+......... ....|++.+.|+-
T Consensus 191 r~~il~~~~~~~~~~~~~--~~~~la~~~~G~~ 221 (254)
T 1ixz_A 191 REQILRIHARGKPLAEDV--DLALLAKRTPGFV 221 (254)
T ss_dssp HHHHHHHHHTTSCBCTTC--CHHHHHHTCTTCC
T ss_pred HHHHHHHHHcCCCCCccc--CHHHHHHHcCCCC
Confidence 888887766432211111 1345667777653
No 71
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=97.67 E-value=0.00099 Score=63.11 Aligned_cols=173 Identities=18% Similarity=0.181 Sum_probs=89.1
Q ss_pred cCccccccchHHHHHHHH---HhcC---------CCceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCCC
Q 010355 146 KGYEAFESRMSTLNDVIN---ALKN---------PDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPD 213 (512)
Q Consensus 146 ~~~~~~~gR~~~l~~l~~---~L~~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~ 213 (512)
.....++|.+..+..+.+ .+.. .-.+-+.|+|++|+|||||++.++.... ...+.+...
T Consensus 37 ~~~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~-----~~~i~~~~~---- 107 (278)
T 1iy2_A 37 VTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR-----VPFITASGS---- 107 (278)
T ss_dssp CCGGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTT-----CCEEEEEHH----
T ss_pred CCHHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcC-----CCEEEecHH----
Confidence 345567787765554443 3221 1112389999999999999999998764 223333321
Q ss_pred HHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHhCCCeEEEEEeCCCChh----------------hhhhh----CCCCCC
Q 010355 214 VKKIQGQIADKLGLKFYEESESGRARKLCERLKKEKKILVILDDIWTNL----------------DLENV----GIPFGV 273 (512)
Q Consensus 214 ~~~ll~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~----------------~~~~l----~~~~~~ 273 (512)
.+. ... . ......+..+.+......+.++++|++.... .+..+ ......
T Consensus 108 --~~~----~~~-~----~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~~ 176 (278)
T 1iy2_A 108 --DFV----EMF-V----GVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKD 176 (278)
T ss_dssp --HHH----HST-T----THHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCTT
T ss_pred --HHH----HHH-h----hHHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCCC
Confidence 111 100 0 0011123344444443457899999984210 01111 000012
Q ss_pred CCeEEEEEeCCcchhcc----ccCCccceecCCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCCh
Q 010355 274 RGCRVLMTARSQDVLSS----KMDCQNNFLIGVLNESEARDLFKKLVGDKIENNDLKSLAMNIVKACRGLP 340 (512)
Q Consensus 274 ~gs~iivTtR~~~v~~~----~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~GlP 340 (512)
....++.||........ ...-...+.+.+.+.++-.+++...+......... ....|+..+.|+.
T Consensus 177 ~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~--~~~~la~~~~G~~ 245 (278)
T 1iy2_A 177 TAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDV--DLALLAKRTPGFV 245 (278)
T ss_dssp CCEEEEEEESCTTSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSCBCTTC--CHHHHHHTCTTCC
T ss_pred CCEEEEEecCCchhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHccCCCCccc--CHHHHHHHcCCCC
Confidence 23445556665544311 01223478888888888888888776432211111 1345677777754
No 72
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.67 E-value=0.0012 Score=62.40 Aligned_cols=124 Identities=14% Similarity=0.223 Sum_probs=70.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCCC--HHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHhCCC
Q 010355 172 MIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPD--VKKIQGQIADKLGLKFYEESESGRARKLCERLKKEK 249 (512)
Q Consensus 172 vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~--~~~ll~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k 249 (512)
-++|+|++|+||||||+.++..... ..+++....-.+ .... ...+..+.+......
T Consensus 46 GvlL~Gp~GtGKTtLakala~~~~~-----~~i~i~g~~l~~~~~~~~-----------------~~~i~~vf~~a~~~~ 103 (274)
T 2x8a_A 46 GVLLAGPPGCGKTLLAKAVANESGL-----NFISVKGPELLNMYVGES-----------------ERAVRQVFQRAKNSA 103 (274)
T ss_dssp EEEEESSTTSCHHHHHHHHHHHTTC-----EEEEEETTTTCSSTTHHH-----------------HHHHHHHHHHHHHTC
T ss_pred eEEEECCCCCcHHHHHHHHHHHcCC-----CEEEEEcHHHHhhhhhHH-----------------HHHHHHHHHHHHhcC
Confidence 3999999999999999999987642 244444332111 0000 112333444432346
Q ss_pred eEEEEEeCCCChhh-------------hh----hhCCCCCCCCeEEEEEeCCcchhccc----cCCccceecCCCCHHHH
Q 010355 250 KILVILDDIWTNLD-------------LE----NVGIPFGVRGCRVLMTARSQDVLSSK----MDCQNNFLIGVLNESEA 308 (512)
Q Consensus 250 ~~LlVlDdv~~~~~-------------~~----~l~~~~~~~gs~iivTtR~~~v~~~~----~~~~~~~~l~~L~~~ea 308 (512)
++++++|++..... .. .+..........++.+|....+.... ..-...+.++..+.++-
T Consensus 104 p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r 183 (274)
T 2x8a_A 104 PCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADR 183 (274)
T ss_dssp SEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGSCHHHHSTTSSCEEEECCSCCHHHH
T ss_pred CCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCCEEEEeecCChhhCCHhhcCcccCCeEEEeCCcCHHHH
Confidence 79999999964210 01 11000012345566677666543111 12235678888888888
Q ss_pred HHHHHHHhC
Q 010355 309 RDLFKKLVG 317 (512)
Q Consensus 309 ~~Lf~~~~~ 317 (512)
.++|+....
T Consensus 184 ~~il~~~~~ 192 (274)
T 2x8a_A 184 LAILKTITK 192 (274)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHHh
Confidence 899987764
No 73
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=97.65 E-value=0.00024 Score=68.43 Aligned_cols=46 Identities=13% Similarity=0.283 Sum_probs=36.5
Q ss_pred ccccchHHHHHHHHHhc--CCCceEEEEEcCCCCcHHHHHHHHHHhhh
Q 010355 150 AFESRMSTLNDVINALK--NPDVHMIGAYGMAGVGKTMLVKEVARQAK 195 (512)
Q Consensus 150 ~~~gR~~~l~~l~~~L~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 195 (512)
.++|+...+..+...+. ......|.|+|.+|+|||++|+.+++...
T Consensus 3 ~iig~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~~~ 50 (304)
T 1ojl_A 3 HMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHACSA 50 (304)
T ss_dssp CCCCCSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHHSS
T ss_pred CcEECCHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHhCc
Confidence 47888888888877665 23445678999999999999999998653
No 74
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.64 E-value=1.6e-05 Score=67.49 Aligned_cols=45 Identities=7% Similarity=0.047 Sum_probs=32.4
Q ss_pred ccccchHHHHHHHHHhc--CCCceEEEEEcCCCCcHHHHHHHHHHhh
Q 010355 150 AFESRMSTLNDVINALK--NPDVHMIGAYGMAGVGKTMLVKEVARQA 194 (512)
Q Consensus 150 ~~~gR~~~l~~l~~~L~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 194 (512)
.++|+...+.++.+.+. ......|.|+|.+|+|||++|+.+++..
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~~ 51 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKNG 51 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCTT
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhC
Confidence 46788888888777665 1233457899999999999999987653
No 75
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.58 E-value=0.00014 Score=79.31 Aligned_cols=147 Identities=15% Similarity=0.191 Sum_probs=81.7
Q ss_pred cccccchHHHHHHHHHhcC---------CCceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCCCHHHHHH
Q 010355 149 EAFESRMSTLNDVINALKN---------PDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQG 219 (512)
Q Consensus 149 ~~~~gR~~~l~~l~~~L~~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ll~ 219 (512)
..++|....+..|...+.. .....+.++|++|+|||+||+.+++.... .-...+.++++......
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~--~~~~~i~i~~s~~~~~~---- 564 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIFG--DEESMIRIDMSEYMEKH---- 564 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHS--CTTCEEEEEGGGGCSSC----
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcC--CCcceEEEechhccccc----
Confidence 3578999888887776651 11237999999999999999999988642 12344556654322100
Q ss_pred HHHHHhCCCCCCCCchHHHHHHHHHHhCCCeEEEEEeCCCCh--hhhhhh-------CCC------CCCCCeEEEEEeCC
Q 010355 220 QIADKLGLKFYEESESGRARKLCERLKKEKKILVILDDIWTN--LDLENV-------GIP------FGVRGCRVLMTARS 284 (512)
Q Consensus 220 ~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~--~~~~~l-------~~~------~~~~gs~iivTtR~ 284 (512)
. .. ...+...+......+|+||++... .....+ .+. ....+++||+||..
T Consensus 565 ----------~-~~----~~~l~~~~~~~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~ 629 (758)
T 3pxi_A 565 ----------S-TS----GGQLTEKVRRKPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNV 629 (758)
T ss_dssp ----------C-CC-------CHHHHHHCSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEESS
T ss_pred ----------c-cc----cchhhHHHHhCCCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCC
Confidence 0 00 111122232234469999999643 111111 110 01345688888873
Q ss_pred cch-------------hccccCC-ccceecCCCCHHHHHHHHHHHh
Q 010355 285 QDV-------------LSSKMDC-QNNFLIGVLNESEARDLFKKLV 316 (512)
Q Consensus 285 ~~v-------------~~~~~~~-~~~~~l~~L~~~ea~~Lf~~~~ 316 (512)
..- ....... ...+.+.||+.++...++...+
T Consensus 630 ~~~~~~~~~~~~~~~f~p~l~~Rl~~~i~~~~l~~~~~~~i~~~~l 675 (758)
T 3pxi_A 630 GASEKDKVMGELKRAFRPEFINRIDEIIVFHSLEKKHLTEIVSLMS 675 (758)
T ss_dssp STTCCHHHHHHHHHHSCHHHHTTSSEEEECC--CHHHHHHHHHHHH
T ss_pred ChhhHHHHHHHHHhhCCHHHHhhCCeEEecCCCCHHHHHHHHHHHH
Confidence 210 0001111 2478899999988888877654
No 76
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.48 E-value=0.0014 Score=67.14 Aligned_cols=198 Identities=19% Similarity=0.223 Sum_probs=100.3
Q ss_pred CccccccchHHHHHHHH---HhcCC---------CceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCCCH
Q 010355 147 GYEAFESRMSTLNDVIN---ALKNP---------DVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDV 214 (512)
Q Consensus 147 ~~~~~~gR~~~l~~l~~---~L~~~---------~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~ 214 (512)
....++|.+..+..+.+ .+... -.+-+.|+|++|+|||+||+.++.... ...+.++.+.-...
T Consensus 29 ~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~-----~~~i~i~g~~~~~~ 103 (499)
T 2dhr_A 29 TFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR-----VPFITASGSDFVEM 103 (499)
T ss_dssp CTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTT-----CCEEEEEGGGGTSS
T ss_pred CHHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhC-----CCEEEEehhHHHHh
Confidence 34567787766555444 33221 123489999999999999999998764 12344443321100
Q ss_pred HHHHHHHHHHhCCCCCCCCchHHHHHHHHHHhCCCeEEEEEeCCCChh----------------hhhhhC---CCCC-CC
Q 010355 215 KKIQGQIADKLGLKFYEESESGRARKLCERLKKEKKILVILDDIWTNL----------------DLENVG---IPFG-VR 274 (512)
Q Consensus 215 ~~ll~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~----------------~~~~l~---~~~~-~~ 274 (512)
.. ......+..+++......+.++++|++.... .+..+. .... ..
T Consensus 104 --------------~~-g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~~~ 168 (499)
T 2dhr_A 104 --------------FV-GVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDT 168 (499)
T ss_dssp --------------CT-THHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCSSC
T ss_pred --------------hh-hhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccccCc
Confidence 00 0000111122222112246899999984220 111211 0011 23
Q ss_pred CeEEEEEeCCcchhcc-cc---CCccceecCCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCCh-hHHHHH---
Q 010355 275 GCRVLMTARSQDVLSS-KM---DCQNNFLIGVLNESEARDLFKKLVGDKIENNDLKSLAMNIVKACRGLP-IAIVTI--- 346 (512)
Q Consensus 275 gs~iivTtR~~~v~~~-~~---~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~GlP-Lai~~i--- 346 (512)
+..|+.||........ .. .-...+.+...+..+-.++|..++......+.. ....|+..+.|+. --|..+
T Consensus 169 ~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~l~~dv--~l~~lA~~t~G~~gadL~~lv~~ 246 (499)
T 2dhr_A 169 AIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDV--DLALLAKRTPGFVGADLENLLNE 246 (499)
T ss_dssp CCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSCCCCSS--TTHHHHTTSCSCCHHHHHHHHHH
T ss_pred cEEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHhcCCCChHH--HHHHHHHhcCCCCHHHHHHHHHH
Confidence 4456666665544311 11 123477888888888888888766432221111 1345777788875 222222
Q ss_pred HHHhc---cC---CHHHHHHHHHHhc
Q 010355 347 ARALR---NK---NTFEWKSALRELT 366 (512)
Q Consensus 347 a~~L~---~~---~~~~w~~~l~~l~ 366 (512)
+..+. ++ +......++....
T Consensus 247 Aa~~A~~~~~~~It~~dl~~al~~v~ 272 (499)
T 2dhr_A 247 AALLAAREGRRKITMKDLEEAADRVM 272 (499)
T ss_dssp HHHHHTTTCCSSCCSHHHHHHHHHHT
T ss_pred HHHHHHHhCCCccCHHHHHHHHHHHh
Confidence 11111 11 5566677776654
No 77
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=97.47 E-value=0.0007 Score=64.46 Aligned_cols=85 Identities=8% Similarity=0.040 Sum_probs=57.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCC-----CCchHHH-HHHHHH
Q 010355 171 HMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIADKLGLKFYE-----ESESGRA-RKLCER 244 (512)
Q Consensus 171 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~i~~~l~~~~~~-----~~~~~~~-~~l~~~ 244 (512)
.++.|+|++|+|||||+.+++........-..++|++....+... .++++|..... ....+.+ ..+.+.
T Consensus 29 GiteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~-----ra~~lGvd~d~llv~~~~~~E~~~l~i~~~ 103 (333)
T 3io5_A 29 GLLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPA-----YLRSMGVDPERVIHTPVQSLEQLRIDMVNQ 103 (333)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHH-----HHHHTTCCGGGEEEEECSBHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHH-----HHHHhCCCHHHeEEEcCCCHHHHHHHHHHH
Confidence 378999999999999999988776532113468899988777653 36777765432 1222222 333344
Q ss_pred H---hCCCeEEEEEeCCCC
Q 010355 245 L---KKEKKILVILDDIWT 260 (512)
Q Consensus 245 l---~~~k~~LlVlDdv~~ 260 (512)
+ ..+++-|||+|-+..
T Consensus 104 l~~i~~~~~~lvVIDSI~a 122 (333)
T 3io5_A 104 LDAIERGEKVVVFIDSLGN 122 (333)
T ss_dssp HHTCCTTCCEEEEEECSTT
T ss_pred HHHhhccCceEEEEecccc
Confidence 3 456789999999854
No 78
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.46 E-value=8.3e-05 Score=63.44 Aligned_cols=40 Identities=23% Similarity=0.333 Sum_probs=30.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCC
Q 010355 169 DVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQ 210 (512)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~ 210 (512)
....++|+|+.|+|||||++.++...... -..++++....
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~--g~~~~~~~~~~ 74 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEA--GKNAAYIDAAS 74 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTT--TCCEEEEETTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhc--CCcEEEEcHHH
Confidence 45789999999999999999999877532 11256665543
No 79
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.41 E-value=0.0004 Score=75.81 Aligned_cols=101 Identities=17% Similarity=0.182 Sum_probs=56.9
Q ss_pred ccccchHHHHHHHHHhcC---------CCceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCCCHHHHHHH
Q 010355 150 AFESRMSTLNDVINALKN---------PDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQ 220 (512)
Q Consensus 150 ~~~gR~~~l~~l~~~L~~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~ 220 (512)
.++|....+..|...+.. .....+.|+|++|+|||+||+.+++... ...+.++++...... .
T Consensus 459 ~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l~-----~~~~~i~~s~~~~~~----~ 529 (758)
T 1r6b_X 459 LVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALG-----IELLRFDMSEYMERH----T 529 (758)
T ss_dssp TSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHT-----CEEEEEEGGGCSSSS----C
T ss_pred hccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHhc-----CCEEEEechhhcchh----h
Confidence 467888888777766541 1234799999999999999999998763 234455554322110 0
Q ss_pred HHHHhCCCCCCCCchHHHHHHHHHHhCCCeEEEEEeCCCC
Q 010355 221 IADKLGLKFYEESESGRARKLCERLKKEKKILVILDDIWT 260 (512)
Q Consensus 221 i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~ 260 (512)
+...+|.+. .-........+...+......+|+||++..
T Consensus 530 ~~~l~g~~~-g~~g~~~~~~l~~~~~~~~~~vl~lDEi~~ 568 (758)
T 1r6b_X 530 VSRLIGAPP-GYVGFDQGGLLTDAVIKHPHAVLLLDEIEK 568 (758)
T ss_dssp CSSSCCCCS-CSHHHHHTTHHHHHHHHCSSEEEEEETGGG
T ss_pred HhhhcCCCC-CCcCccccchHHHHHHhCCCcEEEEeCccc
Confidence 001112111 100001111233444444568999999964
No 80
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.40 E-value=0.00072 Score=70.49 Aligned_cols=155 Identities=19% Similarity=0.183 Sum_probs=74.2
Q ss_pred ccccchHHHHHHHHHhc------CCCceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCCCHHHHHHHHHH
Q 010355 150 AFESRMSTLNDVINALK------NPDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIAD 223 (512)
Q Consensus 150 ~~~gR~~~l~~l~~~L~------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~i~~ 223 (512)
.++|-+.....+...+. .....+++|+|++|+||||||+.++..... .| ..+.++.......+......
T Consensus 82 di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l~~--~~---~~i~~~~~~~~~~~~g~~~~ 156 (543)
T 3m6a_A 82 EHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSLGR--KF---VRISLGGVRDESEIRGHRRT 156 (543)
T ss_dssp HCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHHTC--EE---EEECCCC-------------
T ss_pred HhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhcCC--Ce---EEEEecccchhhhhhhHHHH
Confidence 35566655555443322 224568999999999999999999987742 12 22333322221111111111
Q ss_pred HhCCCCCCCCchHHHHHHHHHHhCCCeEEEEEeCCCChhh------hhhhCCCC--------C---------CCCeEEEE
Q 010355 224 KLGLKFYEESESGRARKLCERLKKEKKILVILDDIWTNLD------LENVGIPF--------G---------VRGCRVLM 280 (512)
Q Consensus 224 ~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~------~~~l~~~~--------~---------~~gs~iiv 280 (512)
..+.. ............. ..-+|+||.+..... ...+...+ . ..+..||.
T Consensus 157 ~ig~~------~~~~~~~~~~a~~-~~~vl~lDEid~l~~~~~~~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v~iI~ 229 (543)
T 3m6a_A 157 YVGAM------PGRIIQGMKKAGK-LNPVFLLDEIDKMSSDFRGDPSSAMLEVLDPEQNSSFSDHYIEETFDLSKVLFIA 229 (543)
T ss_dssp -------------CHHHHHHTTCS-SSEEEEEEESSSCC---------CCGGGTCTTTTTBCCCSSSCCCCBCSSCEEEE
T ss_pred HhccC------chHHHHHHHHhhc-cCCEEEEhhhhhhhhhhccCHHHHHHHHHhhhhcceeecccCCeeecccceEEEe
Confidence 11110 0011112222222 234888999864311 11110000 0 13456666
Q ss_pred EeCCcchhc-cccCCccceecCCCCHHHHHHHHHHHh
Q 010355 281 TARSQDVLS-SKMDCQNNFLIGVLNESEARDLFKKLV 316 (512)
Q Consensus 281 TtR~~~v~~-~~~~~~~~~~l~~L~~~ea~~Lf~~~~ 316 (512)
||....... ........+.+.+++.++-..++..++
T Consensus 230 ttN~~~~l~~aL~~R~~vi~~~~~~~~e~~~Il~~~l 266 (543)
T 3m6a_A 230 TANNLATIPGPLRDRMEIINIAGYTEIEKLEIVKDHL 266 (543)
T ss_dssp ECSSTTTSCHHHHHHEEEEECCCCCHHHHHHHHHHTH
T ss_pred ccCccccCCHHHHhhcceeeeCCCCHHHHHHHHHHHH
Confidence 666543221 111223478999999999888887754
No 81
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.34 E-value=0.0013 Score=60.65 Aligned_cols=90 Identities=13% Similarity=0.150 Sum_probs=55.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhhhhcC----CCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCC----------CCCch
Q 010355 170 VHMIGAYGMAGVGKTMLVKEVARQAKADK----LFDEVVYAEVSQRPDVKKIQGQIADKLGLKFY----------EESES 235 (512)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~f~~~~wv~~~~~~~~~~ll~~i~~~l~~~~~----------~~~~~ 235 (512)
-.++.|+|++|+|||||+..++....... .-..++|++....+....+. .++..++.... ..+..
T Consensus 24 G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~ 102 (243)
T 1n0w_A 24 GSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLL-AVAERYGLSGSDVLDNVAYARAFNTD 102 (243)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCSHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHH-HHHHHcCCCHHHHhhCeEEEecCCHH
Confidence 36899999999999999999988532211 13578898877655554443 34555554321 11111
Q ss_pred H---HHHHHHHHHhCCCeEEEEEeCCCC
Q 010355 236 G---RARKLCERLKKEKKILVILDDIWT 260 (512)
Q Consensus 236 ~---~~~~l~~~l~~~k~~LlVlDdv~~ 260 (512)
. ....+...+...++-+||||.+..
T Consensus 103 ~~~~~~~~~~~~~~~~~~~lliiD~~~~ 130 (243)
T 1n0w_A 103 HQTQLLYQASAMMVESRYALLIVDSATA 130 (243)
T ss_dssp HHHHHHHHHHHHHHHSCEEEEEEETSSG
T ss_pred HHHHHHHHHHHHHhcCCceEEEEeCchH
Confidence 1 123344444445788999999853
No 82
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.32 E-value=0.00054 Score=74.93 Aligned_cols=150 Identities=15% Similarity=0.219 Sum_probs=83.2
Q ss_pred ccccccchHHHHHHHHHhc-------------CCCceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCCCH
Q 010355 148 YEAFESRMSTLNDVINALK-------------NPDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDV 214 (512)
Q Consensus 148 ~~~~~gR~~~l~~l~~~L~-------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~ 214 (512)
...++|.+..+++|.+++. -.....|.|+|++|+||||||+.++..... . .+.++.+.
T Consensus 203 ~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~--~---~i~v~~~~---- 273 (806)
T 1ypw_A 203 YDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGA--F---FFLINGPE---- 273 (806)
T ss_dssp GGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTC--E---EEEEEHHH----
T ss_pred HHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCC--c---EEEEEchH----
Confidence 4567888877777766653 123467999999999999999999886542 1 23333211
Q ss_pred HHHHHHHHHHhCCCCCCCCchHHHHHHHHHHhCCCeEEEEEeCCCChh----------------hh-hhhCCCCCCCCeE
Q 010355 215 KKIQGQIADKLGLKFYEESESGRARKLCERLKKEKKILVILDDIWTNL----------------DL-ENVGIPFGVRGCR 277 (512)
Q Consensus 215 ~~ll~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~----------------~~-~~l~~~~~~~gs~ 277 (512)
+. + . ........+..+++......+.++++|++.... .+ ..+.......+..
T Consensus 274 ------l~---~-~-~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~~~~v~ 342 (806)
T 1ypw_A 274 ------IM---S-K-LAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVI 342 (806)
T ss_dssp ------HS---S-S-STTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCTTSCCE
T ss_pred ------hh---h-h-hhhhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhcccccEE
Confidence 10 0 0 001111223334444433467999999984221 01 1111111123455
Q ss_pred EEEEeCCcchhcccc----CCccceecCCCCHHHHHHHHHHHhC
Q 010355 278 VLMTARSQDVLSSKM----DCQNNFLIGVLNESEARDLFKKLVG 317 (512)
Q Consensus 278 iivTtR~~~v~~~~~----~~~~~~~l~~L~~~ea~~Lf~~~~~ 317 (512)
+|.||.......... .-...+.+...+.++-.+++...+.
T Consensus 343 vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~ 386 (806)
T 1ypw_A 343 VMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTK 386 (806)
T ss_dssp EEEECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTTT
T ss_pred EecccCCchhcCHHHhcccccccccccCCCCHHHHHHHHHHHHh
Confidence 666665543221111 1224577888888998899887764
No 83
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=97.28 E-value=0.0003 Score=67.81 Aligned_cols=53 Identities=17% Similarity=0.305 Sum_probs=35.9
Q ss_pred chHHHHHHHHHhcCC---CceEEEEEcCCCCcHHHHHHHHHHhhh-hcCCCCeEEEEEe
Q 010355 154 RMSTLNDVINALKNP---DVHMIGAYGMAGVGKTMLVKEVARQAK-ADKLFDEVVYAEV 208 (512)
Q Consensus 154 R~~~l~~l~~~L~~~---~~~vi~I~G~gGiGKTtLa~~v~~~~~-~~~~f~~~~wv~~ 208 (512)
+...+..+..++... ....+.|+|++|+|||+||..+++... .. ...++++++
T Consensus 133 ~~~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~~~~~~--g~~v~~~~~ 189 (308)
T 2qgz_A 133 RMEAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHELSEKK--GVSTTLLHF 189 (308)
T ss_dssp HHHHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHHHHHHS--CCCEEEEEH
T ss_pred HHHHHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHHHHHhc--CCcEEEEEH
Confidence 334455555565521 247889999999999999999998776 43 234555554
No 84
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.27 E-value=0.00065 Score=62.17 Aligned_cols=47 Identities=23% Similarity=0.321 Sum_probs=32.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCCCHHHHHHHH
Q 010355 171 HMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQI 221 (512)
Q Consensus 171 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~i 221 (512)
.+++|+|++|+|||||++.++...... -..++|+.... ....+...+
T Consensus 24 ~~~~i~G~~GsGKTtl~~~l~~~~~~~--~~~v~~~~~~~--~~~~~~~~~ 70 (235)
T 2w0m_A 24 FFIALTGEPGTGKTIFSLHFIAKGLRD--GDPCIYVTTEE--SRDSIIRQA 70 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHHH--TCCEEEEESSS--CHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHHC--CCeEEEEEccc--CHHHHHHHH
Confidence 689999999999999999998665432 23466665443 344444433
No 85
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.27 E-value=0.00041 Score=76.64 Aligned_cols=46 Identities=24% Similarity=0.273 Sum_probs=36.6
Q ss_pred ccccchHHHHHHHHHhcC---------CCceEEEEEcCCCCcHHHHHHHHHHhhh
Q 010355 150 AFESRMSTLNDVINALKN---------PDVHMIGAYGMAGVGKTMLVKEVARQAK 195 (512)
Q Consensus 150 ~~~gR~~~l~~l~~~L~~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 195 (512)
.++|....+..+...+.. .....+.|+|++|+|||+||+.+++...
T Consensus 559 ~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~ 613 (854)
T 1qvr_A 559 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLF 613 (854)
T ss_dssp HSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHH
T ss_pred ccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhc
Confidence 468998888887776641 1235899999999999999999998764
No 86
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.25 E-value=0.0018 Score=58.71 Aligned_cols=84 Identities=19% Similarity=0.211 Sum_probs=50.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCC---------CC-CCc---hH
Q 010355 170 VHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIADKLGLKF---------YE-ESE---SG 236 (512)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~i~~~l~~~~---------~~-~~~---~~ 236 (512)
-.++.|+|++|+|||||+..++. .. -..++|++.....+...+.. ++..++... .. ... ..
T Consensus 20 G~~~~i~G~~GsGKTtl~~~l~~-~~----~~~v~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (220)
T 2cvh_A 20 GVLTQVYGPYASGKTTLALQTGL-LS----GKKVAYVDTEGGFSPERLVQ-MAETRGLNPEEALSRFILFTPSDFKEQRR 93 (220)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHH-HH----CSEEEEEESSCCCCHHHHHH-HHHTTTCCHHHHHHHEEEECCTTTSHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH-Hc----CCcEEEEECCCCCCHHHHHH-HHHhcCCChHHHhhcEEEEecCCHHHHHH
Confidence 36899999999999999999988 21 34688888776556555443 444333210 01 111 11
Q ss_pred HHHHHHHHHhCCCeEEEEEeCCCC
Q 010355 237 RARKLCERLKKEKKILVILDDIWT 260 (512)
Q Consensus 237 ~~~~l~~~l~~~k~~LlVlDdv~~ 260 (512)
.+..+. .+...++-+||||.+..
T Consensus 94 ~~~~~~-~l~~~~~~lliiD~~~~ 116 (220)
T 2cvh_A 94 VIGSLK-KTVDSNFALVVVDSITA 116 (220)
T ss_dssp HHHHHH-HHCCTTEEEEEEECCCC
T ss_pred HHHHHH-HHhhcCCCEEEEcCcHH
Confidence 222222 33322578999999854
No 87
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.24 E-value=0.0012 Score=64.51 Aligned_cols=84 Identities=15% Similarity=0.215 Sum_probs=54.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCC------CCchHHHHHHHH
Q 010355 170 VHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIADKLGLKFYE------ESESGRARKLCE 243 (512)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~i~~~l~~~~~~------~~~~~~~~~l~~ 243 (512)
-.++.|+|++|+|||||+.+++...... -..++|++....+... .++.++..... .+.......+..
T Consensus 61 G~i~~I~GppGsGKSTLal~la~~~~~~--gg~VlyId~E~s~~~~-----ra~rlgv~~~~l~i~~~~~~e~~l~~~~~ 133 (356)
T 3hr8_A 61 GRIVEIFGQESSGKTTLALHAIAEAQKM--GGVAAFIDAEHALDPV-----YAKNLGVDLKSLLISQPDHGEQALEIVDE 133 (356)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHHHHT--TCCEEEEESSCCCCHH-----HHHHHTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhc--CCeEEEEecccccchH-----HHHHcCCchhhhhhhhccCHHHHHHHHHH
Confidence 4699999999999999999999876532 2357888877766654 45556654321 122223333333
Q ss_pred HHhCCCeEEEEEeCCCC
Q 010355 244 RLKKEKKILVILDDIWT 260 (512)
Q Consensus 244 ~l~~~k~~LlVlDdv~~ 260 (512)
.+...+.-++|+|.+..
T Consensus 134 l~~~~~~dlvVIDSi~~ 150 (356)
T 3hr8_A 134 LVRSGVVDLIVVDSVAA 150 (356)
T ss_dssp HHHTSCCSEEEEECTTT
T ss_pred HhhhcCCCeEEehHhhh
Confidence 33345667999999843
No 88
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=97.22 E-value=0.00044 Score=66.10 Aligned_cols=68 Identities=18% Similarity=0.244 Sum_probs=42.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEe--CCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHhCC
Q 010355 171 HMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEV--SQRPDVKKIQGQIADKLGLKFYEESESGRARKLCERLKKE 248 (512)
Q Consensus 171 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~--~~~~~~~~ll~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 248 (512)
+++.|+|++|+|||+||.+++... ...++|+++ ....+. ...........+.+.+.+
T Consensus 124 sviLI~GpPGsGKTtLAlqlA~~~-----G~~VlyIs~~~eE~v~~---------------~~~~le~~l~~i~~~l~~- 182 (331)
T 2vhj_A 124 GMVIVTGKGNSGKTPLVHALGEAL-----GGKDKYATVRFGEPLSG---------------YNTDFNVFVDDIARAMLQ- 182 (331)
T ss_dssp EEEEEECSCSSSHHHHHHHHHHHH-----HTTSCCEEEEBSCSSTT---------------CBCCHHHHHHHHHHHHHH-
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhC-----CCCEEEEEecchhhhhh---------------hhcCHHHHHHHHHHHHhh-
Confidence 567899999999999999998762 123456666 222110 001223334455556654
Q ss_pred CeEEEEEeCCCC
Q 010355 249 KKILVILDDIWT 260 (512)
Q Consensus 249 k~~LlVlDdv~~ 260 (512)
.+ +||+|++..
T Consensus 183 ~~-LLVIDsI~a 193 (331)
T 2vhj_A 183 HR-VIVIDSLKN 193 (331)
T ss_dssp CS-EEEEECCTT
T ss_pred CC-EEEEecccc
Confidence 34 999999864
No 89
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.20 E-value=0.0017 Score=63.55 Aligned_cols=89 Identities=16% Similarity=0.247 Sum_probs=56.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhhhhcC----CCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCC----------CCCch
Q 010355 170 VHMIGAYGMAGVGKTMLVKEVARQAKADK----LFDEVVYAEVSQRPDVKKIQGQIADKLGLKFY----------EESES 235 (512)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~f~~~~wv~~~~~~~~~~ll~~i~~~l~~~~~----------~~~~~ 235 (512)
..++.|+|.+|+|||+||.+++....... .-..++|++....++...+.. ++..++.... ..+..
T Consensus 122 G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~-~~~~~g~~~~~~l~~l~~~~~~~~e 200 (343)
T 1v5w_A 122 MAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRD-IADRFNVDHDAVLDNVLYARAYTSE 200 (343)
T ss_dssp SEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHH-HHHHTTCCHHHHHHTEEEEECCSTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHH-HHHHcCCCHHHHHhceeEeecCCHH
Confidence 47899999999999999999988643211 234788999888777766543 4455554321 11111
Q ss_pred ---HHHHHHHHHHhC--CCeEEEEEeCCC
Q 010355 236 ---GRARKLCERLKK--EKKILVILDDIW 259 (512)
Q Consensus 236 ---~~~~~l~~~l~~--~k~~LlVlDdv~ 259 (512)
..+..+...+.. .+.-+||+|.+.
T Consensus 201 ~~~~ll~~l~~~i~~~~~~~~lvVIDsl~ 229 (343)
T 1v5w_A 201 HQMELLDYVAAKFHEEAGIFKLLIIDSIM 229 (343)
T ss_dssp HHHHHHHHHHHHHHHSCSSEEEEEEETSG
T ss_pred HHHHHHHHHHHHHHhcCCCccEEEEechH
Confidence 222333344443 467789999884
No 90
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.19 E-value=0.00069 Score=61.96 Aligned_cols=90 Identities=19% Similarity=0.234 Sum_probs=53.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhhhhc----CCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCC----------CCCc-
Q 010355 170 VHMIGAYGMAGVGKTMLVKEVARQAKAD----KLFDEVVYAEVSQRPDVKKIQGQIADKLGLKFY----------EESE- 234 (512)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~----~~f~~~~wv~~~~~~~~~~ll~~i~~~l~~~~~----------~~~~- 234 (512)
-.+++|+|++|+|||||++.++...... .....++|+.......... +..+++.++.... ....
T Consensus 25 G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (231)
T 4a74_A 25 QAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPER-IREIAQNRGLDPDEVLKHIYVARAFNSN 103 (231)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHH-HHHHHHHTTSCHHHHHHTEEEEECCSHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCHHH-HHHHHHHcCCCHHHHhhcEEEEecCChH
Confidence 3799999999999999999998754321 0134578887655444333 3344444443311 0011
Q ss_pred --hHHHHHHHHHHh-----CCCeEEEEEeCCCC
Q 010355 235 --SGRARKLCERLK-----KEKKILVILDDIWT 260 (512)
Q Consensus 235 --~~~~~~l~~~l~-----~~k~~LlVlDdv~~ 260 (512)
......+...+. ..++-+||||....
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~ 136 (231)
T 4a74_A 104 HQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTS 136 (231)
T ss_dssp HHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSH
T ss_pred HHHHHHHHHHHHHHHhcccCCceeEEEECChHH
Confidence 111233344444 45788999999854
No 91
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.16 E-value=0.0019 Score=62.62 Aligned_cols=90 Identities=21% Similarity=0.291 Sum_probs=58.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhhhhcCC----CCeEEEEEeCCCCCHHHHHHHHHHHhCCCCC----------CCCch
Q 010355 170 VHMIGAYGMAGVGKTMLVKEVARQAKADKL----FDEVVYAEVSQRPDVKKIQGQIADKLGLKFY----------EESES 235 (512)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----f~~~~wv~~~~~~~~~~ll~~i~~~l~~~~~----------~~~~~ 235 (512)
..++.|+|.+|+|||+||.+++........ -..++|++....++...+. +++..++.... ..+..
T Consensus 107 G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~-~~~~~~g~~~~~~~~~l~~~~~~~~~ 185 (324)
T 2z43_A 107 RTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIE-NMAKALGLDIDNVMNNIYYIRAINTD 185 (324)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCSHH
T ss_pred CcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHH-HHHHHhCCCHHHHhccEEEEeCCCHH
Confidence 468999999999999999999876532110 2478999988877766655 34566665421 11111
Q ss_pred ---HHHHHHHHHHhC-CCeEEEEEeCCCC
Q 010355 236 ---GRARKLCERLKK-EKKILVILDDIWT 260 (512)
Q Consensus 236 ---~~~~~l~~~l~~-~k~~LlVlDdv~~ 260 (512)
..+..+...+.. .+.-+||+|.+..
T Consensus 186 ~~~~~l~~l~~~~~~~~~~~lvVIDsl~~ 214 (324)
T 2z43_A 186 HQIAIVDDLQELVSKDPSIKLIVVDSVTS 214 (324)
T ss_dssp HHHHHHHHHHHHHHHCTTEEEEEETTTTH
T ss_pred HHHHHHHHHHHHHHhccCCCEEEEeCcHH
Confidence 123344444444 5678999999853
No 92
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.15 E-value=0.00059 Score=73.67 Aligned_cols=170 Identities=12% Similarity=0.198 Sum_probs=80.3
Q ss_pred ccccccchHHHHHHHHHhc-------------CCCceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCCCH
Q 010355 148 YEAFESRMSTLNDVINALK-------------NPDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDV 214 (512)
Q Consensus 148 ~~~~~gR~~~l~~l~~~L~-------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~ 214 (512)
+..+.|-+...+.|.+.+. ....+-|.++|++|+|||.||+++++..... ++.++ .
T Consensus 476 w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~-------f~~v~----~ 544 (806)
T 3cf2_A 476 WEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQAN-------FISIK----G 544 (806)
T ss_dssp STTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCE-------EEECC----H
T ss_pred HHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCCc-------eEEec----c
Confidence 4455566666666555432 1234568899999999999999999887521 23332 1
Q ss_pred HHHHHHHHHHhCCCCCCCCchHHHHHHHHHHhCCCeEEEEEeCCCChh----------------hhhh----hCCCCCCC
Q 010355 215 KKIQGQIADKLGLKFYEESESGRARKLCERLKKEKKILVILDDIWTNL----------------DLEN----VGIPFGVR 274 (512)
Q Consensus 215 ~~ll~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~----------------~~~~----l~~~~~~~ 274 (512)
.+ ++... . ......+..++...+...+++|+||+++... .... +.......
T Consensus 545 ~~----l~s~~----v-Gese~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~~~ 615 (806)
T 3cf2_A 545 PE----LLTMW----F-GESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKK 615 (806)
T ss_dssp HH----HHTTT----C-SSCHHHHHHHHHHHHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSCSSS
T ss_pred ch----hhccc----c-chHHHHHHHHHHHHHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCCCC
Confidence 12 21111 1 1223456667777766689999999985321 0111 11111133
Q ss_pred CeEEEEEeCCcchh----ccccCCccceecCCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCC
Q 010355 275 GCRVLMTARSQDVL----SSKMDCQNNFLIGVLNESEARDLFKKLVGDKIENNDLKSLAMNIVKACRGL 339 (512)
Q Consensus 275 gs~iivTtR~~~v~----~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~Gl 339 (512)
+.-||.||...... .+...-...+.++.-+.++-.++|+.++......++. -...|++.+.|+
T Consensus 616 ~V~vi~aTN~p~~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~~~~~~~~~--dl~~la~~t~g~ 682 (806)
T 3cf2_A 616 NVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDV--DLEFLAKMTNGF 682 (806)
T ss_dssp SEEEECC-CCSSSSCHHHHSTTTSCCEEEC-----CHHHHTTTTTSSCC--CCC---------------
T ss_pred CEEEEEeCCCchhCCHhHcCCCcceEEEEECCcCHHHHHHHHHHHhcCCCCCCCC--CHHHHHHhCCCC
Confidence 44455455544332 1111223567777666666677777666433222221 134566666654
No 93
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=97.12 E-value=0.00054 Score=65.50 Aligned_cols=27 Identities=26% Similarity=0.391 Sum_probs=23.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhh
Q 010355 169 DVHMIGAYGMAGVGKTMLVKEVARQAK 195 (512)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 195 (512)
..+.+.|+|++|+|||+||+.+++...
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~l~ 61 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRKMG 61 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 346788999999999999999999875
No 94
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=97.07 E-value=0.0023 Score=62.04 Aligned_cols=89 Identities=17% Similarity=0.220 Sum_probs=57.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhhhhcC---------CC-----CeEEEEEeCCCCCHHHHHHHHHHHhCCCCC-----
Q 010355 170 VHMIGAYGMAGVGKTMLVKEVARQAKADK---------LF-----DEVVYAEVSQRPDVKKIQGQIADKLGLKFY----- 230 (512)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~---------~f-----~~~~wv~~~~~~~~~~ll~~i~~~l~~~~~----- 230 (512)
..++.|+|.+|+|||+||.+++....... .. ..++|++....++...+.. ++..++....
T Consensus 98 g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~-~~~~~g~~~~~~~~~ 176 (322)
T 2i1q_A 98 QSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQ-MAEHAGIDGQTVLDN 176 (322)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHH-HHHHHTCCHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHH-HHHHcCCCHHHHhcC
Confidence 47899999999999999999987632110 11 4788999888777766654 4556665421
Q ss_pred ----C-CCch---HHHHHHHHHHhC-CCeEEEEEeCCC
Q 010355 231 ----E-ESES---GRARKLCERLKK-EKKILVILDDIW 259 (512)
Q Consensus 231 ----~-~~~~---~~~~~l~~~l~~-~k~~LlVlDdv~ 259 (512)
. .+.. ..+..+...+.. .+.-+||+|.+.
T Consensus 177 l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~ 214 (322)
T 2i1q_A 177 TFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLT 214 (322)
T ss_dssp EEEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECSS
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECcH
Confidence 0 1111 123344445554 566799999985
No 95
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.02 E-value=0.0022 Score=62.76 Aligned_cols=83 Identities=19% Similarity=0.280 Sum_probs=53.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCC-----CCchHHHHHHHHH
Q 010355 170 VHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIADKLGLKFYE-----ESESGRARKLCER 244 (512)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~i~~~l~~~~~~-----~~~~~~~~~l~~~ 244 (512)
-.++.|+|.+|+||||||.+++...... -..++|++....+... .++.++..... .........+...
T Consensus 61 G~iv~I~G~pGsGKTtLal~la~~~~~~--g~~vlyi~~E~~~~~~-----~a~~lG~~~~~l~i~~~~~~e~~l~~~~~ 133 (349)
T 2zr9_A 61 GRVIEIYGPESSGKTTVALHAVANAQAA--GGIAAFIDAEHALDPE-----YAKKLGVDTDSLLVSQPDTGEQALEIADM 133 (349)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHT--TCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhC--CCeEEEEECCCCcCHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHHH
Confidence 4789999999999999999998766532 3468899887766543 24556654221 1112222223333
Q ss_pred H-hCCCeEEEEEeCCC
Q 010355 245 L-KKEKKILVILDDIW 259 (512)
Q Consensus 245 l-~~~k~~LlVlDdv~ 259 (512)
+ ...+.-+||+|.+.
T Consensus 134 l~~~~~~~lIVIDsl~ 149 (349)
T 2zr9_A 134 LVRSGALDIIVIDSVA 149 (349)
T ss_dssp HHTTTCCSEEEEECGG
T ss_pred HHhcCCCCEEEEcChH
Confidence 3 34457799999984
No 96
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.01 E-value=0.0024 Score=62.78 Aligned_cols=83 Identities=18% Similarity=0.199 Sum_probs=53.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCC------CCchHHHHHHHH
Q 010355 170 VHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIADKLGLKFYE------ESESGRARKLCE 243 (512)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~i~~~l~~~~~~------~~~~~~~~~l~~ 243 (512)
..++.|+|.+|+||||||.+++...... -..++|++....+... .+..++..... .+.......+..
T Consensus 74 G~li~I~G~pGsGKTtlal~la~~~~~~--g~~vlyi~~E~s~~~~-----~a~~~g~d~~~l~i~~~~~~e~~l~~l~~ 146 (366)
T 1xp8_A 74 GRITEIYGPESGGKTTLALAIVAQAQKA--GGTCAFIDAEHALDPV-----YARALGVNTDELLVSQPDNGEQALEIMEL 146 (366)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHT--TCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHHHHC--CCeEEEEECCCChhHH-----HHHHcCCCHHHceeecCCcHHHHHHHHHH
Confidence 3688999999999999999998776532 3478999988766543 24555554221 122222333333
Q ss_pred HHhCCCeEEEEEeCCC
Q 010355 244 RLKKEKKILVILDDIW 259 (512)
Q Consensus 244 ~l~~~k~~LlVlDdv~ 259 (512)
.+...+.-+||+|.+.
T Consensus 147 l~~~~~~~lVVIDsl~ 162 (366)
T 1xp8_A 147 LVRSGAIDVVVVDSVA 162 (366)
T ss_dssp HHTTTCCSEEEEECTT
T ss_pred HHhcCCCCEEEEeChH
Confidence 3333456699999984
No 97
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=96.99 E-value=0.00054 Score=63.60 Aligned_cols=23 Identities=22% Similarity=0.209 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHH
Q 010355 170 VHMIGAYGMAGVGKTMLVKEVAR 192 (512)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~v~~ 192 (512)
-.+++|+|+.|+|||||++.++.
T Consensus 30 G~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 30 GTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHH
Confidence 47899999999999999999884
No 98
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=96.98 E-value=0.002 Score=64.08 Aligned_cols=89 Identities=13% Similarity=0.169 Sum_probs=54.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhhhhcC----CCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCC----------CCCc-
Q 010355 170 VHMIGAYGMAGVGKTMLVKEVARQAKADK----LFDEVVYAEVSQRPDVKKIQGQIADKLGLKFY----------EESE- 234 (512)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~f~~~~wv~~~~~~~~~~ll~~i~~~l~~~~~----------~~~~- 234 (512)
-.++.|+|++|+|||||+..++-...... .-..++|++....+....+ ..+++.++.... ....
T Consensus 178 Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl-~~~a~~~gl~~~~vleni~~~~~~~~~ 256 (400)
T 3lda_A 178 GSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRL-VSIAQRFGLDPDDALNNVAYARAYNAD 256 (400)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHH-HHHHHHTTCCHHHHHHTEEEEECCSHH
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHH-HHHHHHcCCChHhHhhcEEEeccCChH
Confidence 36899999999999999998764432211 2346889887766655543 346666665321 0111
Q ss_pred --hHHHHHHHHHHhCCCeEEEEEeCCC
Q 010355 235 --SGRARKLCERLKKEKKILVILDDIW 259 (512)
Q Consensus 235 --~~~~~~l~~~l~~~k~~LlVlDdv~ 259 (512)
......+...+...+.-+||+|.+.
T Consensus 257 ~~~~~l~~~~~~l~~~~~~llVIDs~t 283 (400)
T 3lda_A 257 HQLRLLDAAAQMMSESRFSLIVVDSVM 283 (400)
T ss_dssp HHHHHHHHHHHHHHHSCEEEEEEETGG
T ss_pred HHHHHHHHHHHHHHhcCCceEEecchh
Confidence 1122333444444567899999873
No 99
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.92 E-value=0.0027 Score=62.22 Aligned_cols=83 Identities=20% Similarity=0.353 Sum_probs=52.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCC-----CCchHHHHHHHHH
Q 010355 170 VHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIADKLGLKFYE-----ESESGRARKLCER 244 (512)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~i~~~l~~~~~~-----~~~~~~~~~l~~~ 244 (512)
.+++.|+|.+|+||||||.+++...... -..++|++....++.. .+..++..... .........+...
T Consensus 63 G~ii~I~G~pGsGKTtLal~la~~~~~~--g~~vlyid~E~s~~~~-----~a~~~g~~~~~l~i~~~~~~e~~~~~~~~ 135 (356)
T 1u94_A 63 GRIVEIYGPESSGKTTLTLQVIAAAQRE--GKTCAFIDAEHALDPI-----YARKLGVDIDNLLCSQPDTGEQALEICDA 135 (356)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHHT--TCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHC--CCeEEEEeCCCCccHH-----HHHHcCCChhheeeeCCCCHHHHHHHHHH
Confidence 4689999999999999999998776532 3468899987766643 24555554221 1112222233333
Q ss_pred H-hCCCeEEEEEeCCC
Q 010355 245 L-KKEKKILVILDDIW 259 (512)
Q Consensus 245 l-~~~k~~LlVlDdv~ 259 (512)
+ ...+.-+||+|.+.
T Consensus 136 l~~~~~~~lVVIDsl~ 151 (356)
T 1u94_A 136 LARSGAVDVIVVDSVA 151 (356)
T ss_dssp HHHHTCCSEEEEECGG
T ss_pred HHhccCCCEEEEcCHH
Confidence 3 23456699999974
No 100
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.81 E-value=0.00079 Score=61.30 Aligned_cols=111 Identities=11% Similarity=0.028 Sum_probs=62.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHhC-
Q 010355 169 DVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIADKLGLKFYEESESGRARKLCERLKK- 247 (512)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~i~~~l~~~~~~~~~~~~~~~l~~~l~~- 247 (512)
...++.|+|..|+||||++..++++.... -..++.+...... . ....+++.+|........ .....++..+..
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r~~~~--g~kVli~~~~~d~--r-~~~~i~srlG~~~~~~~~-~~~~~i~~~i~~~ 84 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHRLEYA--DVKYLVFKPKIDT--R-SIRNIQSRTGTSLPSVEV-ESAPEILNYIMSN 84 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHHHHHT--TCCEEEEEECCCG--G-GCSSCCCCCCCSSCCEEE-SSTHHHHHHHHST
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHHHHhc--CCEEEEEEeccCc--h-HHHHHHHhcCCCcccccc-CCHHHHHHHHHHH
Confidence 34789999999999999999998887643 2234444333221 1 223455666654332111 112234444432
Q ss_pred ---CCeEEEEEeCCCCh--hhhhhhCCCCCCCCeEEEEEeCCcc
Q 010355 248 ---EKKILVILDDIWTN--LDLENVGIPFGVRGCRVLMTARSQD 286 (512)
Q Consensus 248 ---~k~~LlVlDdv~~~--~~~~~l~~~~~~~gs~iivTtR~~~ 286 (512)
++.-+||+|.+... ..+..+.. +...|..||+|.+...
T Consensus 85 ~~~~~~dvViIDEaQ~l~~~~ve~l~~-L~~~gi~Vil~Gl~~d 127 (223)
T 2b8t_A 85 SFNDETKVIGIDEVQFFDDRICEVANI-LAENGFVVIISGLDKN 127 (223)
T ss_dssp TSCTTCCEEEECSGGGSCTHHHHHHHH-HHHTTCEEEEECCSBC
T ss_pred hhCCCCCEEEEecCccCcHHHHHHHHH-HHhCCCeEEEEecccc
Confidence 34559999998532 23333311 1123788999998543
No 101
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=96.79 E-value=0.0014 Score=61.45 Aligned_cols=60 Identities=10% Similarity=0.162 Sum_probs=39.3
Q ss_pred cccccchHHHHHHHHHhc--CCCceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCC
Q 010355 149 EAFESRMSTLNDVINALK--NPDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQ 210 (512)
Q Consensus 149 ~~~~gR~~~l~~l~~~L~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~ 210 (512)
..|+|+...+..+.+.+. ......|.|+|.+|+|||+||+.+++..... -...+.++++.
T Consensus 6 ~~~ig~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~~~~~--~~~~~~v~~~~ 67 (265)
T 2bjv_A 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRW--QGPFISLNCAA 67 (265)
T ss_dssp ----CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHTSTTT--TSCEEEEEGGG
T ss_pred ccceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhcCcc--CCCeEEEecCC
Confidence 457888888887776554 2233568899999999999999999875422 12345555554
No 102
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.79 E-value=0.0053 Score=58.55 Aligned_cols=87 Identities=16% Similarity=0.161 Sum_probs=49.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCC-CCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHhC
Q 010355 169 DVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQ-RPDVKKIQGQIADKLGLKFYEESESGRARKLCERLKK 247 (512)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~-~~~~~~ll~~i~~~l~~~~~~~~~~~~~~~l~~~l~~ 247 (512)
...+++|+|++|+||||++..++....... -..+..+.... .....+.+......++.+.........+......+ .
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~-G~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~al~~~-~ 181 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEK-HKKIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKELF-S 181 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTT-CCCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHHHHHG-G
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhc-CCEEEEEecCcccchHHHHHHHHHHhcCCCeEecCCHHHHHHHHHHh-c
Confidence 357999999999999999999998776321 12455555432 23344445555555555432222222222233333 2
Q ss_pred CCeEEEEEeCC
Q 010355 248 EKKILVILDDI 258 (512)
Q Consensus 248 ~k~~LlVlDdv 258 (512)
+.=++|+|-.
T Consensus 182 -~~dlvIiDT~ 191 (296)
T 2px0_A 182 -EYDHVFVDTA 191 (296)
T ss_dssp -GSSEEEEECC
T ss_pred -CCCEEEEeCC
Confidence 3457888843
No 103
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=96.79 E-value=0.0084 Score=58.48 Aligned_cols=157 Identities=8% Similarity=-0.094 Sum_probs=93.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHhC
Q 010355 168 PDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIADKLGLKFYEESESGRARKLCERLKK 247 (512)
Q Consensus 168 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~i~~~l~~~~~~~~~~~~~~~l~~~l~~ 247 (512)
.-.++..++|+.|.||++.+..+....... .|.....+.+....++.++...+.. .-+ -
T Consensus 16 ~~~~~yl~~G~e~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~-------------------~pl-f 74 (343)
T 1jr3_D 16 GLRAAYLLLGNDPLLLQESQDAVRQVAAAQ-GFEEHHTFSIDPNTDWNAIFSLCQA-------------------MSL-F 74 (343)
T ss_dssp CCCSEEEEEESCHHHHHHHHHHHHHHHHHH-TCCEEEEEECCTTCCHHHHHHHHHH-------------------HHH-C
T ss_pred CCCcEEEEECCcHHHHHHHHHHHHHHHHhC-CCCeeEEEEecCCCCHHHHHHHhcC-------------------cCC-c
Confidence 446899999999999999999998876432 2433222233333444444333210 011 1
Q ss_pred CCeEEEEEeCCCC-h--hhhhhhC--CCCCCCCeEEEEEeCCc-------chhccccCCccceecCCCCHHHHHHHHHHH
Q 010355 248 EKKILVILDDIWT-N--LDLENVG--IPFGVRGCRVLMTARSQ-------DVLSSKMDCQNNFLIGVLNESEARDLFKKL 315 (512)
Q Consensus 248 ~k~~LlVlDdv~~-~--~~~~~l~--~~~~~~gs~iivTtR~~-------~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~ 315 (512)
+++-++|+|++.. . ..++.+. ...+.+++.+|++|... .+..........+...+++..+....+.+.
T Consensus 75 ~~~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~~~~l~~~l~~~ 154 (343)
T 1jr3_D 75 ASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAAR 154 (343)
T ss_dssp CSCEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCTTHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCCHHHHHHHHHHH
Confidence 4567888999865 2 3333331 11124577777776431 222222344568899999999999888877
Q ss_pred hCCCCCCchhHHHHHHHHHHcCCChhHHHHH
Q 010355 316 VGDKIENNDLKSLAMNIVKACRGLPIAIVTI 346 (512)
Q Consensus 316 ~~~~~~~~~~~~~~~~I~~~~~GlPLai~~i 346 (512)
+..... .--.+.+..|++.++|.+..+...
T Consensus 155 ~~~~g~-~i~~~a~~~l~~~~~gdl~~~~~e 184 (343)
T 1jr3_D 155 AKQLNL-ELDDAANQVLCYCYEGNLLALAQA 184 (343)
T ss_dssp HHHTTC-EECHHHHHHHHHSSTTCHHHHHHH
T ss_pred HHHcCC-CCCHHHHHHHHHHhchHHHHHHHH
Confidence 642221 111356778889999988877653
No 104
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=96.67 E-value=0.011 Score=56.94 Aligned_cols=51 Identities=14% Similarity=0.115 Sum_probs=39.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHH
Q 010355 170 VHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIADK 224 (512)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~i~~~ 224 (512)
-.++.|.|.+|+||||||.+++.....+. ..++|++.. .+..++...++..
T Consensus 68 G~l~li~G~pG~GKTtl~l~ia~~~a~~g--~~vl~~slE--~s~~~l~~R~~~~ 118 (315)
T 3bh0_A 68 RNFVLIAARPSMGKTAFALKQAKNMSDND--DVVNLHSLE--MGKKENIKRLIVT 118 (315)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHTTT--CEEEEEESS--SCHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHcC--CeEEEEECC--CCHHHHHHHHHHH
Confidence 36899999999999999999987765432 577887765 4667777776654
No 105
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.54 E-value=0.0026 Score=56.96 Aligned_cols=43 Identities=14% Similarity=0.282 Sum_probs=33.8
Q ss_pred cchHHHHHHHHHhcC---CCceEEEEEcCCCCcHHHHHHHHHHhhh
Q 010355 153 SRMSTLNDVINALKN---PDVHMIGAYGMAGVGKTMLVKEVARQAK 195 (512)
Q Consensus 153 gR~~~l~~l~~~L~~---~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 195 (512)
.|.+.++.|.+.+.. ....+|+|.|..|+|||||++.+.....
T Consensus 2 ~~~~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~~~~ 47 (201)
T 1rz3_A 2 ELRDRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTLR 47 (201)
T ss_dssp CHHHHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 355667777776653 3457999999999999999999988764
No 106
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.47 E-value=0.015 Score=58.30 Aligned_cols=28 Identities=29% Similarity=0.389 Sum_probs=24.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhhh
Q 010355 169 DVHMIGAYGMAGVGKTMLVKEVARQAKA 196 (512)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 196 (512)
...+|.|+|.+|+||||++..++.....
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~ 126 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQK 126 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHH
Confidence 4689999999999999999999987764
No 107
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=96.46 E-value=0.0079 Score=58.85 Aligned_cols=92 Identities=17% Similarity=0.216 Sum_probs=53.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhhhcCCC----CeEEEEEeCCCCCHHHHHHHHHHHhCCCCC----------CCC-
Q 010355 169 DVHMIGAYGMAGVGKTMLVKEVARQAKADKLF----DEVVYAEVSQRPDVKKIQGQIADKLGLKFY----------EES- 233 (512)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f----~~~~wv~~~~~~~~~~ll~~i~~~l~~~~~----------~~~- 233 (512)
.-.++.|+|++|+|||||+.+++......... ..++|++....+.... +..+++.++.... ...
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~-i~~i~q~~~~~~~~v~~ni~~~~~~~~ 208 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPER-IREIAQNRGLDPDEVLKHIYVARAFNS 208 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHH-HHHHHHTTTCCHHHHGGGEEEEECCSH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHH-HHHHHHHcCCCHHHHhhCEEEEecCCh
Confidence 34799999999999999999998875311111 2458888766544333 3345555443211 000
Q ss_pred --chHHHHHHHHHHhC-----CCeEEEEEeCCCCh
Q 010355 234 --ESGRARKLCERLKK-----EKKILVILDDIWTN 261 (512)
Q Consensus 234 --~~~~~~~l~~~l~~-----~k~~LlVlDdv~~~ 261 (512)
....+..+...+.. .++-|||||.+...
T Consensus 209 ~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ 243 (349)
T 1pzn_A 209 NHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSH 243 (349)
T ss_dssp HHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTT
T ss_pred HHHHHHHHHHHHHHHHhccccCCCCEEEEeCchHh
Confidence 01122233333332 46889999998643
No 108
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=96.44 E-value=0.0053 Score=59.98 Aligned_cols=97 Identities=18% Similarity=0.215 Sum_probs=53.8
Q ss_pred HHHHHhc-CCCceEEEEEcCCCCcHHHHHHHHHHhhhhcC-CCCeEEEEEeCCCCCHHHHHHHHHHHhCC----CCCCCC
Q 010355 160 DVINALK-NPDVHMIGAYGMAGVGKTMLVKEVARQAKADK-LFDEVVYAEVSQRPDVKKIQGQIADKLGL----KFYEES 233 (512)
Q Consensus 160 ~l~~~L~-~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-~f~~~~wv~~~~~~~~~~ll~~i~~~l~~----~~~~~~ 233 (512)
++++.+. -..-..++|+|.+|+|||||++.+++....++ .+. ++++-+++...... .+.+.+.. .....+
T Consensus 163 raID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~~~~~~v~-~I~~lIGER~~Ev~---~~~~~~~~~vV~atadep 238 (422)
T 3ice_A 163 RVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCV-LMVLLIDERPEEVT---EMQRLVKGEVVASTFDEP 238 (422)
T ss_dssp HHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHHHHHCTTSE-EEEEEESSCHHHHH---HHHTTCSSEEEEECTTSC
T ss_pred eeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHHhhcCCCee-EEEEEecCChHHHH---HHHHHhCeEEEEeCCCCC
Confidence 3444444 23346899999999999999999988765422 222 44577776542221 22222210 000111
Q ss_pred chH------HHHHHHHHHh-CCCeEEEEEeCCCC
Q 010355 234 ESG------RARKLCERLK-KEKKILVILDDIWT 260 (512)
Q Consensus 234 ~~~------~~~~l~~~l~-~~k~~LlVlDdv~~ 260 (512)
... ....+.+++. .++.+||++|++..
T Consensus 239 ~~~r~~~a~~alt~AEyfrd~G~dVLil~DslTR 272 (422)
T 3ice_A 239 ASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITR 272 (422)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSCEEEEEEECHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCEEEEEeCchH
Confidence 111 1112333343 57999999999854
No 109
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.44 E-value=0.011 Score=54.27 Aligned_cols=48 Identities=13% Similarity=0.224 Sum_probs=33.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCCCHHHHHHHH
Q 010355 170 VHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQI 221 (512)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~i 221 (512)
-.++.|.|++|+|||||+.+++...... -..++|++... +...+...+
T Consensus 23 G~~~~i~G~~GsGKTtl~~~~~~~~~~~--~~~v~~~~~e~--~~~~~~~~~ 70 (247)
T 2dr3_A 23 RNVVLLSGGPGTGKTIFSQQFLWNGLKM--GEPGIYVALEE--HPVQVRQNM 70 (247)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHHHHT--TCCEEEEESSS--CHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhc--CCeEEEEEccC--CHHHHHHHH
Confidence 3689999999999999999887765432 34677777554 344444433
No 110
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=96.42 E-value=0.0015 Score=63.97 Aligned_cols=50 Identities=16% Similarity=0.222 Sum_probs=36.8
Q ss_pred cCccccccchHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHhhh
Q 010355 146 KGYEAFESRMSTLNDVINALKNPDVHMIGAYGMAGVGKTMLVKEVARQAK 195 (512)
Q Consensus 146 ~~~~~~~gR~~~l~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 195 (512)
.....++|....+..+...+.......+.|+|++|+|||+||+.+++...
T Consensus 21 ~~f~~i~G~~~~~~~l~~~~~~~~~~~vLl~G~~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 21 FPFSAIVGQEDMKLALLLTAVDPGIGGVLVFGDRGTGKSTAVRALAALLP 70 (350)
T ss_dssp CCGGGSCSCHHHHHHHHHHHHCGGGCCEEEECCGGGCTTHHHHHHHHHSC
T ss_pred CCchhccChHHHHHHHHHHhhCCCCceEEEECCCCccHHHHHHHHHHhCc
Confidence 34556889888666554444333344589999999999999999998764
No 111
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.33 E-value=0.0021 Score=56.09 Aligned_cols=25 Identities=24% Similarity=0.246 Sum_probs=22.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhhh
Q 010355 171 HMIGAYGMAGVGKTMLVKEVARQAK 195 (512)
Q Consensus 171 ~vi~I~G~gGiGKTtLa~~v~~~~~ 195 (512)
.+|.|+|++|+||||+|+.+.....
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 5799999999999999999998764
No 112
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.33 E-value=0.02 Score=57.39 Aligned_cols=28 Identities=29% Similarity=0.233 Sum_probs=24.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhhh
Q 010355 169 DVHMIGAYGMAGVGKTMLVKEVARQAKA 196 (512)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 196 (512)
...+|.++|++|+||||++..++.....
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~ 123 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKK 123 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4689999999999999999999987764
No 113
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.32 E-value=0.0039 Score=56.12 Aligned_cols=40 Identities=23% Similarity=0.397 Sum_probs=31.3
Q ss_pred HHHHHHHHHhcC--CCceEEEEEcCCCCcHHHHHHHHHHhhh
Q 010355 156 STLNDVINALKN--PDVHMIGAYGMAGVGKTMLVKEVARQAK 195 (512)
Q Consensus 156 ~~l~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 195 (512)
..+++|.+.+.. ....+|+|+|+.|+|||||++.++....
T Consensus 6 ~~~~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 6 ALCQGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp HHHHHHHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 345566666552 4567999999999999999999988765
No 114
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.30 E-value=0.0023 Score=55.37 Aligned_cols=25 Identities=16% Similarity=0.147 Sum_probs=22.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhhh
Q 010355 171 HMIGAYGMAGVGKTMLVKEVARQAK 195 (512)
Q Consensus 171 ~vi~I~G~gGiGKTtLa~~v~~~~~ 195 (512)
.+|+|.|++|+||||+++.++....
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4789999999999999999988764
No 115
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=96.27 E-value=0.0096 Score=59.96 Aligned_cols=88 Identities=24% Similarity=0.403 Sum_probs=52.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCC-CHHHHHHHHHHHhCCC-------CCCCCchH------
Q 010355 171 HMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRP-DVKKIQGQIADKLGLK-------FYEESESG------ 236 (512)
Q Consensus 171 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~ll~~i~~~l~~~-------~~~~~~~~------ 236 (512)
+.++|+|.+|+|||||++.+........ ...++++.++... ...+++..+...-... ....+...
T Consensus 152 q~~~i~G~sGvGKTtL~~~l~~~~~~~~-~~i~V~~~iGerttev~el~~~l~~~~~l~~tvvv~~~~~d~pg~r~~~~~ 230 (473)
T 1sky_E 152 GKIGLFGGAGVGKTVLIQELIHNIAQEH-GGISVFAGVGERTREGNDLYHEMKDSGVISKTAMVFGQMNEPPGARMRVAL 230 (473)
T ss_dssp CEEEEECCSSSCHHHHHHHHHHHHHHHT-CCCEEEEEESSCHHHHHHHHHHHHHTSGGGGEEEEEECTTSCHHHHHHHHH
T ss_pred CEEEEECCCCCCccHHHHHHHhhhhhcc-CcEEEEeeeccCchHHHHHHHHhhhcCCcceeEEEEEcCCCCHHHHHHHHH
Confidence 4588999999999999999988765432 2345666676654 3445555554321000 00011110
Q ss_pred HHHHHHHHHh--CCCeEEEEEeCCC
Q 010355 237 RARKLCERLK--KEKKILVILDDIW 259 (512)
Q Consensus 237 ~~~~l~~~l~--~~k~~LlVlDdv~ 259 (512)
....+.+++. ++++.||++|++.
T Consensus 231 ~~ltiAEyFrd~~G~~VLl~~D~it 255 (473)
T 1sky_E 231 TGLTMAEYFRDEQGQDGLLFIDNIF 255 (473)
T ss_dssp HHHHHHHHHHHHSCCEEEEEEECTH
T ss_pred HHHHHHHHHHHhcCCcEEEEeccHH
Confidence 1224455554 4899999999994
No 116
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.23 E-value=0.01 Score=53.70 Aligned_cols=27 Identities=19% Similarity=0.283 Sum_probs=24.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhh
Q 010355 169 DVHMIGAYGMAGVGKTMLVKEVARQAK 195 (512)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 195 (512)
..++|.|.|++|+||||.|+.++..+.
T Consensus 28 k~kiI~llGpPGsGKgTqa~~L~~~~g 54 (217)
T 3umf_A 28 KAKVIFVLGGPGSGKGTQCEKLVQKFH 54 (217)
T ss_dssp SCEEEEEECCTTCCHHHHHHHHHHHHC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHC
Confidence 568999999999999999999998764
No 117
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=96.22 E-value=0.02 Score=55.07 Aligned_cols=44 Identities=18% Similarity=0.178 Sum_probs=30.8
Q ss_pred ccchHHHHHHHHHhc-C---CCceEEEEEcCCCCcHHHHHHHHHHhhh
Q 010355 152 ESRMSTLNDVINALK-N---PDVHMIGAYGMAGVGKTMLVKEVARQAK 195 (512)
Q Consensus 152 ~gR~~~l~~l~~~L~-~---~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 195 (512)
+|....+..+...+. . ....+|+|.|+.|+|||||++.+.....
T Consensus 70 ~~~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 70 VTARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp HHHHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred hcchHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 344444554443333 2 2456999999999999999999987765
No 118
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=96.22 E-value=0.022 Score=57.26 Aligned_cols=58 Identities=21% Similarity=0.338 Sum_probs=36.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCC-CCCHHHHHHHHHHHhCC
Q 010355 169 DVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQ-RPDVKKIQGQIADKLGL 227 (512)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~-~~~~~~ll~~i~~~l~~ 227 (512)
..++|.|+|.+|+||||++..++.....+. -..+..+++.. .......+.......++
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~-G~kVllvd~D~~r~~a~~ql~~~~~~~~l 157 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLREKH-KKKVLVVSADVYRPAAIKQLETLAEQVGV 157 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHHHTS-CCCEEEEECCCSSTTHHHHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhc-CCeEEEEecCCCCccHHHHHHhhcccCCe
Confidence 467999999999999999999998876431 22445555543 22333333333444444
No 119
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=96.19 E-value=0.0028 Score=56.01 Aligned_cols=113 Identities=13% Similarity=0.026 Sum_probs=59.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCC---CCCHHHHHHHHH---HHhCC--CCCCCC-------ch
Q 010355 171 HMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQ---RPDVKKIQGQIA---DKLGL--KFYEES-------ES 235 (512)
Q Consensus 171 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~---~~~~~~ll~~i~---~~l~~--~~~~~~-------~~ 235 (512)
..|.|++-.|.||||+|...+-+... +-..+.++..-. ......++..+. ..++. ...... ..
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g--~G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a~ 106 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVG--HGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAACM 106 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHH--TTCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHH--CCCeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHHH
Confidence 55667777779999999988877653 233555564433 233444444431 00011 111111 01
Q ss_pred HHHHHHHHHHhCCCeEEEEEeCCCCh--------hhhhhhCCCCCCCCeEEEEEeCCcc
Q 010355 236 GRARKLCERLKKEKKILVILDDIWTN--------LDLENVGIPFGVRGCRVLMTARSQD 286 (512)
Q Consensus 236 ~~~~~l~~~l~~~k~~LlVlDdv~~~--------~~~~~l~~~~~~~gs~iivTtR~~~ 286 (512)
.....+.+.+..++-=|||||.+... ..+-.+.. .......||+|+|...
T Consensus 107 ~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~-~Rp~~~~vIlTGr~ap 164 (196)
T 1g5t_A 107 AVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALN-ARPGHQTVIITGRGCH 164 (196)
T ss_dssp HHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHH-TSCTTCEEEEECSSCC
T ss_pred HHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHH-hCcCCCEEEEECCCCc
Confidence 12334455555555569999998432 11111111 1135678999999874
No 120
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.17 E-value=0.0029 Score=54.82 Aligned_cols=20 Identities=35% Similarity=0.493 Sum_probs=18.9
Q ss_pred eEEEEEcCCCCcHHHHHHHH
Q 010355 171 HMIGAYGMAGVGKTMLVKEV 190 (512)
Q Consensus 171 ~vi~I~G~gGiGKTtLa~~v 190 (512)
.+|+|.|++|+||||+|+.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 47899999999999999999
No 121
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=96.17 E-value=0.0027 Score=61.66 Aligned_cols=45 Identities=18% Similarity=0.243 Sum_probs=37.4
Q ss_pred cccccchHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHhhh
Q 010355 149 EAFESRMSTLNDVINALKNPDVHMIGAYGMAGVGKTMLVKEVARQAK 195 (512)
Q Consensus 149 ~~~~gR~~~l~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 195 (512)
..++|++..+..+...+..+ ..+.|+|++|+|||+||+.+++...
T Consensus 27 ~~i~g~~~~~~~l~~~l~~~--~~vll~G~pGtGKT~la~~la~~~~ 71 (331)
T 2r44_A 27 KVVVGQKYMINRLLIGICTG--GHILLEGVPGLAKTLSVNTLAKTMD 71 (331)
T ss_dssp TTCCSCHHHHHHHHHHHHHT--CCEEEESCCCHHHHHHHHHHHHHTT
T ss_pred cceeCcHHHHHHHHHHHHcC--CeEEEECCCCCcHHHHHHHHHHHhC
Confidence 35789999888888777643 4688999999999999999998764
No 122
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=96.17 E-value=0.017 Score=58.23 Aligned_cols=97 Identities=24% Similarity=0.353 Sum_probs=62.8
Q ss_pred HHHhc-CCCceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCC-CHHHHHHHHHHHhCCC-------CC--
Q 010355 162 INALK-NPDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRP-DVKKIQGQIADKLGLK-------FY-- 230 (512)
Q Consensus 162 ~~~L~-~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~ll~~i~~~l~~~-------~~-- 230 (512)
++.|. -.+-.-++|.|.+|+|||+|+..+++.... .+-+.++++-++... ...+++..+...-... ..
T Consensus 156 ID~l~pigkGqr~gIfgg~GvGKT~L~~~l~~~~a~-~~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~l~~~rtvv 234 (498)
T 1fx0_B 156 VNLLAPYRRGGKIGLFGGAGVGKTVLIMELINNIAK-AHGGVSVFGGVGERTREGNDLYMEMKESGVINEQNIAESKVAL 234 (498)
T ss_dssp HHHHSCCCTTCCEEEEECSSSSHHHHHHHHHHHTTT-TCSSCEEEEEESCCSHHHHHHHHHHHHTTSSCSSTTCCCCEEE
T ss_pred eeeecccccCCeEEeecCCCCCchHHHHHHHHHHHh-hCCCEEEEEEcccCcHHHHHHHHhhhcccccccccccccceEE
Confidence 44444 223456899999999999999999987643 345678888888766 4566777776542221 00
Q ss_pred ---CCCc--------hHHHHHHHHHHhC--CCeEEEEEeCCC
Q 010355 231 ---EESE--------SGRARKLCERLKK--EKKILVILDDIW 259 (512)
Q Consensus 231 ---~~~~--------~~~~~~l~~~l~~--~k~~LlVlDdv~ 259 (512)
..+. ......+.++++. ++.+||++||+.
T Consensus 235 V~~t~d~p~~~R~~~~~~altiAEyfrd~~G~dVLl~~Dsit 276 (498)
T 1fx0_B 235 VYGQMNEPPGARMRVGLTALTMAEYFRDVNEQDVLLFIDNIF 276 (498)
T ss_dssp EEECTTSCHHHHTTHHHHHHHTHHHHTTTSCCEEEEEEECSH
T ss_pred EEeCCCCCHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccHH
Confidence 0011 1223455666664 799999999984
No 123
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.14 E-value=0.001 Score=72.66 Aligned_cols=150 Identities=12% Similarity=0.221 Sum_probs=81.1
Q ss_pred ccccccchHHHHHHHHHhcC-------------CCceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCCCH
Q 010355 148 YEAFESRMSTLNDVINALKN-------------PDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDV 214 (512)
Q Consensus 148 ~~~~~gR~~~l~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~ 214 (512)
...+.|.+...+.|...+.- ...+.+.++|++|+|||+||+.++..... .|- .++.+.-.+
T Consensus 476 ~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~--~~i---~v~~~~l~~- 549 (806)
T 1ypw_A 476 WEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQA--NFI---SIKGPELLT- 549 (806)
T ss_dssp SCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTC--CCC---CCCCSSSTT-
T ss_pred ccccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhCC--CEE---EEechHhhh-
Confidence 44566777777777665531 13456889999999999999999988752 221 112111100
Q ss_pred HHHHHHHHHHhCCCCCCCCchHHHHHHHHHHhCCCeEEEEEeCCCCh----------------hhhhhhCCCCC----CC
Q 010355 215 KKIQGQIADKLGLKFYEESESGRARKLCERLKKEKKILVILDDIWTN----------------LDLENVGIPFG----VR 274 (512)
Q Consensus 215 ~~ll~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~----------------~~~~~l~~~~~----~~ 274 (512)
... ......+..+++......+++|+||++... ..+..+...+. ..
T Consensus 550 -------------~~~-g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~v~~~LL~~ld~~~~~~ 615 (806)
T 1ypw_A 550 -------------MWF-GESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKK 615 (806)
T ss_dssp -------------CCT-TTSSHHHHHHHHHHHHHCSBCCCCSSHHHHCCTTTTCCSHHHHHHHHHHHHHHTTCC------
T ss_pred -------------hhc-CccHHHHHHHHHHHHhcCCeEEEEEChhhhhhhccCCCCCcchhHHHHHHHHHHHHhcccccC
Confidence 000 111223344444444345678999997431 01122212221 23
Q ss_pred CeEEEEEeCCcchh-cccc---CCccceecCCCCHHHHHHHHHHHhC
Q 010355 275 GCRVLMTARSQDVL-SSKM---DCQNNFLIGVLNESEARDLFKKLVG 317 (512)
Q Consensus 275 gs~iivTtR~~~v~-~~~~---~~~~~~~l~~L~~~ea~~Lf~~~~~ 317 (512)
+..||.||...... .... .....+.+.+.+.++-..+|+.++.
T Consensus 616 ~v~vI~tTN~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~ 662 (806)
T 1ypw_A 616 NVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLR 662 (806)
T ss_dssp CCBCCCCCBSCGGGSCTTSSGGGTTSCCCCCCCCCSHHHHHTTTTTS
T ss_pred CeEEEEecCCcccCCHHHhCccccCceeecCCCCHHHHHHHHHHHhc
Confidence 44566666544322 1111 1224677888888888888887764
No 124
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=96.12 E-value=0.0035 Score=55.97 Aligned_cols=27 Identities=37% Similarity=0.367 Sum_probs=23.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhh
Q 010355 169 DVHMIGAYGMAGVGKTMLVKEVARQAK 195 (512)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 195 (512)
...+|+|+|++|+||||+++.++....
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~~l~ 50 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFARKLN 50 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 346899999999999999999998764
No 125
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.11 E-value=0.0042 Score=54.74 Aligned_cols=29 Identities=21% Similarity=0.286 Sum_probs=25.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHhhhh
Q 010355 168 PDVHMIGAYGMAGVGKTMLVKEVARQAKA 196 (512)
Q Consensus 168 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 196 (512)
....+|.|.|++|+||||+++.++.....
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~~l~~ 39 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLADLLQK 39 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 34578999999999999999999988764
No 126
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=96.10 E-value=0.0027 Score=65.08 Aligned_cols=44 Identities=11% Similarity=0.169 Sum_probs=36.8
Q ss_pred ccccchHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHhhh
Q 010355 150 AFESRMSTLNDVINALKNPDVHMIGAYGMAGVGKTMLVKEVARQAK 195 (512)
Q Consensus 150 ~~~gR~~~l~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 195 (512)
.++|++..+..+...+..+ ..|.|+|++|+|||+||+.+++...
T Consensus 23 ~ivGq~~~i~~l~~al~~~--~~VLL~GpPGtGKT~LAraLa~~l~ 66 (500)
T 3nbx_X 23 GLYERSHAIRLCLLAALSG--ESVFLLGPPGIAKSLIARRLKFAFQ 66 (500)
T ss_dssp TCSSCHHHHHHHHHHHHHT--CEEEEECCSSSSHHHHHHHGGGGBS
T ss_pred hhHHHHHHHHHHHHHHhcC--CeeEeecCchHHHHHHHHHHHHHHh
Confidence 4789999888888777644 4688999999999999999988764
No 127
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.10 E-value=0.0035 Score=54.68 Aligned_cols=22 Identities=27% Similarity=0.445 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHH
Q 010355 171 HMIGAYGMAGVGKTMLVKEVAR 192 (512)
Q Consensus 171 ~vi~I~G~gGiGKTtLa~~v~~ 192 (512)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5789999999999999999987
No 128
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=96.09 E-value=0.0094 Score=70.13 Aligned_cols=84 Identities=17% Similarity=0.184 Sum_probs=56.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCC------CCchHHHHHHH
Q 010355 169 DVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIADKLGLKFYE------ESESGRARKLC 242 (512)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~i~~~l~~~~~~------~~~~~~~~~l~ 242 (512)
..+++.|+|++|+|||+||.+++..... .-..++|+++...+.... ++.+|.+... .+.......+.
T Consensus 1426 ~g~~vll~GppGtGKT~LA~ala~ea~~--~G~~v~Fi~~e~~~~~l~-----a~~~G~dl~~l~v~~~~~~E~~l~~~~ 1498 (2050)
T 3cmu_A 1426 MGRIVEIYGPESSGKTTLTLQVIAAAQR--EGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD 1498 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHHT--TTCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH--cCCcEEEEEcccccCHHH-----HHHcCCCchhceeecCChHHHHHHHHH
Confidence 4579999999999999999999887653 234678888877766554 4555643221 11223333444
Q ss_pred HHHhCCCeEEEEEeCCC
Q 010355 243 ERLKKEKKILVILDDIW 259 (512)
Q Consensus 243 ~~l~~~k~~LlVlDdv~ 259 (512)
....+.+..+||+|.+.
T Consensus 1499 ~lvr~~~~~lVVIDsi~ 1515 (2050)
T 3cmu_A 1499 ALARSGAVDVIVVDSVA 1515 (2050)
T ss_dssp HHHHHTCCSEEEESCGG
T ss_pred HHHhcCCCCEEEEcChh
Confidence 44455678899999984
No 129
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.07 E-value=0.0036 Score=54.99 Aligned_cols=26 Identities=31% Similarity=0.426 Sum_probs=23.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhhh
Q 010355 170 VHMIGAYGMAGVGKTMLVKEVARQAK 195 (512)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 195 (512)
.+.|.|+|++|+||||+|+.++....
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~ 30 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTK 30 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46789999999999999999998764
No 130
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.01 E-value=0.028 Score=53.75 Aligned_cols=87 Identities=18% Similarity=0.203 Sum_probs=49.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCCCH--HHHHHHHHHHhCCCCCCC---Cch-HH-HHHH
Q 010355 169 DVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDV--KKIQGQIADKLGLKFYEE---SES-GR-ARKL 241 (512)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~--~~ll~~i~~~l~~~~~~~---~~~-~~-~~~l 241 (512)
...+++|+|++|+||||++..++...... -..+.++.... +.. .+-+...+..++++.... ... .. ...+
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l~~~--g~kV~lv~~D~-~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~al 179 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMFVDE--GKSVVLAAADT-FRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAV 179 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHT--TCCEEEEEECT-TCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHHHhc--CCEEEEEcccc-ccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHH
Confidence 45799999999999999999999887642 23455555432 222 222344455555442211 111 11 1233
Q ss_pred HHHHhCCCeEEEEEeCCC
Q 010355 242 CERLKKEKKILVILDDIW 259 (512)
Q Consensus 242 ~~~l~~~k~~LlVlDdv~ 259 (512)
...+.. .+-++|+|-.-
T Consensus 180 ~~a~~~-~~dvvIiDtpg 196 (306)
T 1vma_A 180 AHALAR-NKDVVIIDTAG 196 (306)
T ss_dssp HHHHHT-TCSEEEEEECC
T ss_pred HHHHhc-CCCEEEEECCC
Confidence 333443 44578888663
No 131
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.00 E-value=0.0034 Score=54.45 Aligned_cols=25 Identities=28% Similarity=0.371 Sum_probs=22.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhhh
Q 010355 171 HMIGAYGMAGVGKTMLVKEVARQAK 195 (512)
Q Consensus 171 ~vi~I~G~gGiGKTtLa~~v~~~~~ 195 (512)
.+|+|+|++|+|||||++.++....
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC
Confidence 5799999999999999999988754
No 132
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=95.99 E-value=0.0047 Score=55.15 Aligned_cols=28 Identities=21% Similarity=0.267 Sum_probs=25.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHhhh
Q 010355 168 PDVHMIGAYGMAGVGKTMLVKEVARQAK 195 (512)
Q Consensus 168 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 195 (512)
....+|+|+|++|+|||||++.++....
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4568999999999999999999998775
No 133
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=95.99 E-value=0.0041 Score=54.88 Aligned_cols=25 Identities=24% Similarity=0.369 Sum_probs=22.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhhh
Q 010355 171 HMIGAYGMAGVGKTMLVKEVARQAK 195 (512)
Q Consensus 171 ~vi~I~G~gGiGKTtLa~~v~~~~~ 195 (512)
.+|+|.|++|+||||+++.++....
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5789999999999999999998775
No 134
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=95.98 E-value=0.0067 Score=59.76 Aligned_cols=45 Identities=22% Similarity=0.179 Sum_probs=35.5
Q ss_pred cccchHHHHHHHHHhc-------------C--CCceEEEEEcCCCCcHHHHHHHHHHhhh
Q 010355 151 FESRMSTLNDVINALK-------------N--PDVHMIGAYGMAGVGKTMLVKEVARQAK 195 (512)
Q Consensus 151 ~~gR~~~l~~l~~~L~-------------~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 195 (512)
++|....++.|...+. . ...+.+.|+|++|+|||++|+.+++...
T Consensus 17 i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~ 76 (363)
T 3hws_A 17 VIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLD 76 (363)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred ccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 5788888887777662 1 1346789999999999999999998764
No 135
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=95.95 E-value=0.0049 Score=54.45 Aligned_cols=26 Identities=27% Similarity=0.318 Sum_probs=23.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhhh
Q 010355 170 VHMIGAYGMAGVGKTMLVKEVARQAK 195 (512)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 195 (512)
..+|.|.|++|+||||+++.+.....
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l~ 30 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGLR 30 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcC
Confidence 46899999999999999999987663
No 136
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=95.94 E-value=0.0042 Score=54.48 Aligned_cols=26 Identities=15% Similarity=0.282 Sum_probs=22.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhhh
Q 010355 170 VHMIGAYGMAGVGKTMLVKEVARQAK 195 (512)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 195 (512)
.++++|+|++|+|||||++.+.....
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 36899999999999999999987653
No 137
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=95.93 E-value=0.0048 Score=55.09 Aligned_cols=27 Identities=26% Similarity=0.432 Sum_probs=23.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHhh
Q 010355 168 PDVHMIGAYGMAGVGKTMLVKEVARQA 194 (512)
Q Consensus 168 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 194 (512)
....+|+|.|+.|+|||||++.++...
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 345799999999999999999998765
No 138
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=95.93 E-value=0.0045 Score=54.68 Aligned_cols=24 Identities=21% Similarity=0.343 Sum_probs=21.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHh
Q 010355 170 VHMIGAYGMAGVGKTMLVKEVARQ 193 (512)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~v~~~ 193 (512)
..+++|+|++|+|||||++.++..
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHhc
Confidence 468999999999999999999765
No 139
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=95.92 E-value=0.038 Score=52.60 Aligned_cols=87 Identities=23% Similarity=0.267 Sum_probs=51.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCC-CCHHHHHHHHHHHhCCCCCC----CCchHHHHHHHHH
Q 010355 170 VHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQR-PDVKKIQGQIADKLGLKFYE----ESESGRARKLCER 244 (512)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-~~~~~ll~~i~~~l~~~~~~----~~~~~~~~~l~~~ 244 (512)
..+++|+|.+|+||||++..++...... -..+.++..... +.....+.......+.+... .+...........
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~--g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~ 175 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKK--GFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEK 175 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHT--TCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHC--CCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHH
Confidence 5789999999999999999999877643 234566665432 22333344555556654222 1222333344555
Q ss_pred HhCCCeEEEEEeCC
Q 010355 245 LKKEKKILVILDDI 258 (512)
Q Consensus 245 l~~~k~~LlVlDdv 258 (512)
+.....=++|+|-.
T Consensus 176 ~~~~~~D~ViIDTp 189 (297)
T 1j8m_F 176 FLSEKMEIIIVDTA 189 (297)
T ss_dssp HHHTTCSEEEEECC
T ss_pred HHhCCCCEEEEeCC
Confidence 54222237888875
No 140
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=95.90 E-value=0.035 Score=55.82 Aligned_cols=98 Identities=22% Similarity=0.342 Sum_probs=62.0
Q ss_pred HHHHhc-CCCceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCC-CHHHHHHHHHHHhCCC------C---
Q 010355 161 VINALK-NPDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRP-DVKKIQGQIADKLGLK------F--- 229 (512)
Q Consensus 161 l~~~L~-~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~ll~~i~~~l~~~------~--- 229 (512)
.++.|. -.+-.-++|.|.+|+|||+|+..+++.... .+-+.++++-++... ...++++.+...-... .
T Consensus 143 ~ID~l~pigkGQr~~Ifgg~G~GKT~L~~~i~~~~~~-~~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~~~~rtvv 221 (482)
T 2ck3_D 143 VVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAK-AHGGYSVFAGVGERTREGNDLYHEMIESGVINLKDATSKVAL 221 (482)
T ss_dssp HHHHHSCEETTCEEEEEECTTSSHHHHHHHHHHHTTT-TCSSEEEEEEESCCHHHHHHHHHHHHHHTSSCSSSSCCCEEE
T ss_pred EEecccccccCCeeeeecCCCCChHHHHHHHHHhhHh-hCCCEEEEEECCCcchHHHHHHHHhhhccccccccCCceEEE
Confidence 444444 123367899999999999999999987642 234667788887765 4556667776542221 0
Q ss_pred --CCCCc--h------HHHHHHHHHHh--CCCeEEEEEeCCC
Q 010355 230 --YEESE--S------GRARKLCERLK--KEKKILVILDDIW 259 (512)
Q Consensus 230 --~~~~~--~------~~~~~l~~~l~--~~k~~LlVlDdv~ 259 (512)
...+. . .....+.++++ .++.+||++|++.
T Consensus 222 V~~t~d~p~~~r~~~~~~a~tiAEyfrd~~G~dVLll~Dsit 263 (482)
T 2ck3_D 222 VYGQMNEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIF 263 (482)
T ss_dssp EEECTTSCHHHHHHHHHHHHHHHHHHHHTTCSCEEEEEECTH
T ss_pred EEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccHH
Confidence 00111 1 12334555665 4799999999984
No 141
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=95.90 E-value=0.073 Score=54.43 Aligned_cols=38 Identities=18% Similarity=0.111 Sum_probs=27.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEe
Q 010355 169 DVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEV 208 (512)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~ 208 (512)
..++|+|+|.+|+||||++..++.....+ -..+..|+.
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~--G~kVllVd~ 137 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRK--GWKTCLICA 137 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHT--TCCEEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhC--CCeEEEEec
Confidence 45799999999999999999999877643 123444544
No 142
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=95.90 E-value=0.0048 Score=54.37 Aligned_cols=25 Identities=20% Similarity=0.324 Sum_probs=22.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhhh
Q 010355 171 HMIGAYGMAGVGKTMLVKEVARQAK 195 (512)
Q Consensus 171 ~vi~I~G~gGiGKTtLa~~v~~~~~ 195 (512)
.+|+|.|++|+||||+++.++....
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5799999999999999999998765
No 143
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=95.89 E-value=0.026 Score=54.65 Aligned_cols=51 Identities=12% Similarity=0.017 Sum_probs=38.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHH
Q 010355 170 VHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIADK 224 (512)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~i~~~ 224 (512)
..++.|.|.+|+||||||..++..... .-..++|++.. .+..++...++..
T Consensus 46 G~LiiIaG~pG~GKTt~al~ia~~~a~--~g~~Vl~fSlE--ms~~ql~~Rlls~ 96 (338)
T 4a1f_A 46 GSLVIIGARPSMGKTSLMMNMVLSALN--DDRGVAVFSLE--MSAEQLALRALSD 96 (338)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHHHH--TTCEEEEEESS--SCHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHH--cCCeEEEEeCC--CCHHHHHHHHHHH
Confidence 368999999999999999999887664 23466776653 4667777776554
No 144
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=95.88 E-value=0.0044 Score=54.23 Aligned_cols=26 Identities=42% Similarity=0.463 Sum_probs=22.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhhh
Q 010355 170 VHMIGAYGMAGVGKTMLVKEVARQAK 195 (512)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 195 (512)
.++|.|+|++|+||||+++.++....
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~~ 36 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKSG 36 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHhC
Confidence 46789999999999999999987764
No 145
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=95.87 E-value=0.0052 Score=53.05 Aligned_cols=27 Identities=26% Similarity=0.416 Sum_probs=23.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhh
Q 010355 169 DVHMIGAYGMAGVGKTMLVKEVARQAK 195 (512)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 195 (512)
...+|+|.|+.|+||||+++.++....
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~~lg 32 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGLALK 32 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ccceEEEECCCCCCHHHHHHHHHHHhC
Confidence 457899999999999999999998765
No 146
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=95.87 E-value=0.0041 Score=55.61 Aligned_cols=26 Identities=23% Similarity=0.330 Sum_probs=23.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhhh
Q 010355 170 VHMIGAYGMAGVGKTMLVKEVARQAK 195 (512)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 195 (512)
..+|+|.|++|+||||||+.++....
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg 43 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACG 43 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999988763
No 147
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=95.85 E-value=0.011 Score=56.94 Aligned_cols=41 Identities=15% Similarity=0.243 Sum_probs=32.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCC
Q 010355 168 PDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQ 210 (512)
Q Consensus 168 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~ 210 (512)
.+.++|+|+|-|||||||.+..++..+... -..+.-|.+..
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNLA~aLA~~--GkkVllID~Dp 86 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNLSAAFSIL--GKRVLQIGCDP 86 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHHT--TCCEEEEEESS
T ss_pred CCceEEEEECCCccCHHHHHHHHHHHHHHC--CCeEEEEecCC
Confidence 467999999999999999999988877643 23566677654
No 148
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=95.83 E-value=0.0075 Score=54.79 Aligned_cols=37 Identities=24% Similarity=0.364 Sum_probs=28.5
Q ss_pred HHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHhhh
Q 010355 159 NDVINALKNPDVHMIGAYGMAGVGKTMLVKEVARQAK 195 (512)
Q Consensus 159 ~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 195 (512)
..+...+.....+.|+|+|.+|+|||||+..++....
T Consensus 27 ~~~r~~~~~~~~~~i~ivG~~gvGKTtl~~~l~~~~~ 63 (226)
T 2hf9_A 27 DKNRKLLNKHGVVAFDFMGAIGSGKTLLIEKLIDNLK 63 (226)
T ss_dssp HHHHHHHHHTTCEEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCCeEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 3444444445678899999999999999999988754
No 149
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=95.80 E-value=0.0043 Score=54.71 Aligned_cols=25 Identities=28% Similarity=0.359 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhhh
Q 010355 171 HMIGAYGMAGVGKTMLVKEVARQAK 195 (512)
Q Consensus 171 ~vi~I~G~gGiGKTtLa~~v~~~~~ 195 (512)
+.|+|+|++|+|||||++.+.....
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~~ 26 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCC
Confidence 5688999999999999999987654
No 150
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=95.77 E-value=0.0058 Score=56.88 Aligned_cols=25 Identities=24% Similarity=0.309 Sum_probs=22.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhhh
Q 010355 171 HMIGAYGMAGVGKTMLVKEVARQAK 195 (512)
Q Consensus 171 ~vi~I~G~gGiGKTtLa~~v~~~~~ 195 (512)
++|+|.|++|+||||||+.++....
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~ 26 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETG 26 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCC
Confidence 5789999999999999999988754
No 151
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=95.76 E-value=0.005 Score=53.59 Aligned_cols=25 Identities=28% Similarity=0.452 Sum_probs=22.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhhh
Q 010355 171 HMIGAYGMAGVGKTMLVKEVARQAK 195 (512)
Q Consensus 171 ~vi~I~G~gGiGKTtLa~~v~~~~~ 195 (512)
+.|.|.|++|+||||+|+.++....
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~~l~ 29 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAKDLD 29 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 3689999999999999999988764
No 152
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=95.75 E-value=0.05 Score=55.02 Aligned_cols=52 Identities=12% Similarity=-0.029 Sum_probs=38.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHH
Q 010355 170 VHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIADK 224 (512)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~i~~~ 224 (512)
..++.|.|.+|+||||||.+++...... .-..++|++.. .+..++...++..
T Consensus 200 G~l~ii~G~pg~GKT~lal~ia~~~a~~-~g~~vl~~slE--~~~~~l~~R~~~~ 251 (444)
T 2q6t_A 200 GSLNIIAARPAMGKTAFALTIAQNAALK-EGVGVGIYSLE--MPAAQLTLRMMCS 251 (444)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHHHHT-TCCCEEEEESS--SCHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHh-CCCeEEEEECC--CCHHHHHHHHHHH
Confidence 3689999999999999999999876532 12357777664 4566777776543
No 153
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=95.75 E-value=0.0093 Score=59.00 Aligned_cols=26 Identities=27% Similarity=0.396 Sum_probs=22.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhhh
Q 010355 170 VHMIGAYGMAGVGKTMLVKEVARQAK 195 (512)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 195 (512)
...+.|+|++|+|||+||+.+++...
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~~l~ 97 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAKHLD 97 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhC
Confidence 45688999999999999999998763
No 154
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=95.74 E-value=0.0051 Score=55.16 Aligned_cols=26 Identities=31% Similarity=0.442 Sum_probs=23.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhhh
Q 010355 170 VHMIGAYGMAGVGKTMLVKEVARQAK 195 (512)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 195 (512)
.++|+|+|++|+|||||++.+.....
T Consensus 12 ~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 12 IPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 46899999999999999999988763
No 155
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=95.74 E-value=0.011 Score=57.24 Aligned_cols=40 Identities=20% Similarity=0.302 Sum_probs=29.9
Q ss_pred HHHHHHHHHhc----CCCceEEEEEcCCCCcHHHHHHHHHHhhh
Q 010355 156 STLNDVINALK----NPDVHMIGAYGMAGVGKTMLVKEVARQAK 195 (512)
Q Consensus 156 ~~l~~l~~~L~----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 195 (512)
...+.++..+. .+....|.|+|++|+||||+++.++....
T Consensus 6 ~L~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~ 49 (359)
T 2ga8_A 6 KLADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIIN 49 (359)
T ss_dssp HHHHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 33444444443 45567799999999999999999988765
No 156
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=95.73 E-value=0.0078 Score=52.29 Aligned_cols=25 Identities=36% Similarity=0.535 Sum_probs=22.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhh
Q 010355 170 VHMIGAYGMAGVGKTMLVKEVARQA 194 (512)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~v~~~~ 194 (512)
..+|+|+|++|+|||||++.++...
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 4689999999999999999998764
No 157
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=95.73 E-value=0.0062 Score=54.82 Aligned_cols=27 Identities=26% Similarity=0.316 Sum_probs=23.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhh
Q 010355 169 DVHMIGAYGMAGVGKTMLVKEVARQAK 195 (512)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 195 (512)
...+|+|+|+.|+|||||++.++....
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 457899999999999999999988754
No 158
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=95.73 E-value=0.0033 Score=61.63 Aligned_cols=111 Identities=9% Similarity=0.091 Sum_probs=59.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCCCHH--HHHHHHHHHhCCCCCCCCchHHHHHHHHHHh
Q 010355 169 DVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVK--KIQGQIADKLGLKFYEESESGRARKLCERLK 246 (512)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~--~ll~~i~~~l~~~~~~~~~~~~~~~l~~~l~ 246 (512)
...+++|+|+.|+|||||.+.++...... ....+ +.+..+.... .. ..++.+... ..........+...|.
T Consensus 122 ~~g~i~I~GptGSGKTTlL~~l~g~~~~~--~~~~i-~t~ed~~e~~~~~~-~~~v~q~~~---~~~~~~~~~~La~aL~ 194 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTTLAAMLDYLNNT--KYHHI-LTIEDPIEFVHESK-KCLVNQREV---HRDTLGFSEALRSALR 194 (356)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHHHHH--CCCEE-EEEESSCCSCCCCS-SSEEEEEEB---TTTBSCHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcccCC--CCcEE-EEccCcHHhhhhcc-ccceeeeee---ccccCCHHHHHHHHhh
Confidence 33599999999999999999988766432 11222 1222211100 00 000000000 0011122335566666
Q ss_pred CCCeEEEEEeCCCChhhhhhhCCCCCCCCeEEEEEeCCcchh
Q 010355 247 KEKKILVILDDIWTNLDLENVGIPFGVRGCRVLMTARSQDVL 288 (512)
Q Consensus 247 ~~k~~LlVlDdv~~~~~~~~l~~~~~~~gs~iivTtR~~~v~ 288 (512)
. .+=+|++|.+.+...+..+... ...|..||+|+.....+
T Consensus 195 ~-~PdvillDEp~d~e~~~~~~~~-~~~G~~vl~t~H~~~~~ 234 (356)
T 3jvv_A 195 E-DPDIILVGEMRDLETIRLALTA-AETGHLVFGTLHTTSAA 234 (356)
T ss_dssp S-CCSEEEESCCCSHHHHHHHHHH-HHTTCEEEEEESCSSHH
T ss_pred h-CcCEEecCCCCCHHHHHHHHHH-HhcCCEEEEEEccChHH
Confidence 4 6788999999876655543111 23466689999876543
No 159
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=95.71 E-value=0.0077 Score=52.98 Aligned_cols=25 Identities=28% Similarity=0.298 Sum_probs=22.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHh
Q 010355 169 DVHMIGAYGMAGVGKTMLVKEVARQ 193 (512)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~v~~~ 193 (512)
....|+|+|++|+||||+++.+...
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3468999999999999999999876
No 160
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=95.70 E-value=0.0075 Score=53.83 Aligned_cols=27 Identities=22% Similarity=0.335 Sum_probs=23.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhh
Q 010355 169 DVHMIGAYGMAGVGKTMLVKEVARQAK 195 (512)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 195 (512)
...+|+|.|++|+||||+++.++....
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~~g 40 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKDYS 40 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 457899999999999999999987653
No 161
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=95.70 E-value=0.035 Score=52.81 Aligned_cols=88 Identities=20% Similarity=0.283 Sum_probs=48.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCCC-HHHHHHHHHHHhCCCCCC----CCchHHHHHHHH
Q 010355 169 DVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPD-VKKIQGQIADKLGLKFYE----ESESGRARKLCE 243 (512)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~-~~~ll~~i~~~l~~~~~~----~~~~~~~~~l~~ 243 (512)
...+++|+|.+|+||||++..++...... -..+.++....... ....+..+....+++... ............
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~--~~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~~~~~~~~~p~~l~~~~l~ 174 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGK--GRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEE 174 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHT--TCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEecCCcccHhHHHHHHHhcccCCeEEEEcCCCCCHHHHHHHHHH
Confidence 34789999999999999999999887642 23455555432221 112233445555554321 122223233344
Q ss_pred HHhCCCeEEEEEeCC
Q 010355 244 RLKKEKKILVILDDI 258 (512)
Q Consensus 244 ~l~~~k~~LlVlDdv 258 (512)
.+.....=+||+|--
T Consensus 175 ~~~~~~~D~viiDtp 189 (295)
T 1ls1_A 175 KARLEARDLILVDTA 189 (295)
T ss_dssp HHHHHTCCEEEEECC
T ss_pred HHHhCCCCEEEEeCC
Confidence 442123457888976
No 162
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=95.69 E-value=0.0064 Score=54.21 Aligned_cols=24 Identities=25% Similarity=0.584 Sum_probs=21.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhh
Q 010355 172 MIGAYGMAGVGKTMLVKEVARQAK 195 (512)
Q Consensus 172 vi~I~G~gGiGKTtLa~~v~~~~~ 195 (512)
.|+|.|+.|+||||+++.++....
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 689999999999999999998765
No 163
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=95.69 E-value=0.007 Score=53.45 Aligned_cols=26 Identities=15% Similarity=0.185 Sum_probs=22.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhhh
Q 010355 170 VHMIGAYGMAGVGKTMLVKEVARQAK 195 (512)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 195 (512)
..+|+|.|++|+||||+|+.++....
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~~ 28 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKYG 28 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhC
Confidence 36899999999999999999987653
No 164
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=95.69 E-value=0.0068 Score=53.66 Aligned_cols=26 Identities=19% Similarity=0.287 Sum_probs=23.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhhh
Q 010355 170 VHMIGAYGMAGVGKTMLVKEVARQAK 195 (512)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 195 (512)
..+|+|.|++|+||||+|+.++....
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~l~ 34 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQKYG 34 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999987654
No 165
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=95.68 E-value=0.014 Score=55.46 Aligned_cols=54 Identities=15% Similarity=0.028 Sum_probs=34.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHhhhhcC-CCCeEEEEEeCCCCCHHHHHHHH
Q 010355 168 PDVHMIGAYGMAGVGKTMLVKEVARQAKADK-LFDEVVYAEVSQRPDVKKIQGQI 221 (512)
Q Consensus 168 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-~f~~~~wv~~~~~~~~~~ll~~i 221 (512)
....+|+|+|..|+||||||+.+........ ....+..|+...-.-.......+
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~f~~~~~~~~~l 83 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFYLTHEDQLKL 83 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGGBCCHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhhcCCCCceEEEeccccccCChHHHHHH
Confidence 4567999999999999999999988765321 12233443544433333444444
No 166
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=95.67 E-value=0.01 Score=56.29 Aligned_cols=26 Identities=23% Similarity=0.221 Sum_probs=22.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhh
Q 010355 169 DVHMIGAYGMAGVGKTMLVKEVARQA 194 (512)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 194 (512)
...+|.|.|++|+||||||+.+....
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45789999999999999999998764
No 167
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=95.67 E-value=0.0053 Score=53.92 Aligned_cols=25 Identities=20% Similarity=0.323 Sum_probs=22.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhhh
Q 010355 171 HMIGAYGMAGVGKTMLVKEVARQAK 195 (512)
Q Consensus 171 ~vi~I~G~gGiGKTtLa~~v~~~~~ 195 (512)
++|+|.|++|+||||+|+.++....
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALG 27 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcC
Confidence 4689999999999999999988764
No 168
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=95.66 E-value=0.0072 Score=54.68 Aligned_cols=40 Identities=20% Similarity=0.326 Sum_probs=30.1
Q ss_pred HHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHhhh
Q 010355 156 STLNDVINALKNPDVHMIGAYGMAGVGKTMLVKEVARQAK 195 (512)
Q Consensus 156 ~~l~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 195 (512)
.....+...+.....++|+|+|.+|+|||||+..+.....
T Consensus 16 ~~~~~~~~~~~~~~~~~i~i~G~~g~GKTTl~~~l~~~~~ 55 (221)
T 2wsm_A 16 RLAEKNREALRESGTVAVNIMGAIGSGKTLLIERTIERIG 55 (221)
T ss_dssp HHHHHHHHHHHHHTCEEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhcccCceEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 3344444444445678999999999999999999988754
No 169
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=95.64 E-value=0.0079 Score=53.96 Aligned_cols=26 Identities=19% Similarity=0.233 Sum_probs=23.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhhhh
Q 010355 171 HMIGAYGMAGVGKTMLVKEVARQAKA 196 (512)
Q Consensus 171 ~vi~I~G~gGiGKTtLa~~v~~~~~~ 196 (512)
.+|+|.|++|+||||+|+.++.....
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l~~ 30 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWIEL 30 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 68999999999999999999987753
No 170
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=95.61 E-value=0.019 Score=50.74 Aligned_cols=24 Identities=25% Similarity=0.401 Sum_probs=22.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhh
Q 010355 172 MIGAYGMAGVGKTMLVKEVARQAK 195 (512)
Q Consensus 172 vi~I~G~gGiGKTtLa~~v~~~~~ 195 (512)
.|+|.|+.|+||||+++.+.....
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~ 25 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLE 25 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 589999999999999999998774
No 171
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=95.60 E-value=0.0085 Score=52.59 Aligned_cols=26 Identities=19% Similarity=0.218 Sum_probs=22.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhhh
Q 010355 170 VHMIGAYGMAGVGKTMLVKEVARQAK 195 (512)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 195 (512)
...|+|.|++|+||||+++.++....
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~~l~ 29 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQELG 29 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35789999999999999999987653
No 172
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=95.60 E-value=0.038 Score=67.23 Aligned_cols=136 Identities=13% Similarity=0.100 Sum_probs=74.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHhCCCe
Q 010355 171 HMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIADKLGLKFYEESESGRARKLCERLKKEKK 250 (512)
Q Consensus 171 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~ 250 (512)
+-|.++|++|+|||+||+.+..... . ...+.++.+...+...+.+.+-..+.......... ..-...+++
T Consensus 1268 ~~vLL~GPpGtGKT~la~~~l~~~~---~-~~~~~infsa~ts~~~~~~~i~~~~~~~~~~~g~~------~~P~~~gk~ 1337 (2695)
T 4akg_A 1268 RGIILCGPPGSGKTMIMNNALRNSS---L-YDVVGINFSKDTTTEHILSALHRHTNYVTTSKGLT------LLPKSDIKN 1337 (2695)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSCS---S-CEEEEEECCTTCCHHHHHHHHHHHBCCEEETTTEE------EEEBSSSSC
T ss_pred CeEEEECCCCCCHHHHHHHHHhcCC---C-CceEEEEeecCCCHHHHHHHHHHHhhhccccCCcc------ccCCCCCce
Confidence 5788999999999999988776532 1 24556778877777777766665543211000000 000002578
Q ss_pred EEEEEeCCCCh--h------h---hhhh---CC-CCCC-------CCeEEEEEeCCcc------hhccccCCccceecCC
Q 010355 251 ILVILDDIWTN--L------D---LENV---GI-PFGV-------RGCRVLMTARSQD------VLSSKMDCQNNFLIGV 302 (512)
Q Consensus 251 ~LlVlDdv~~~--~------~---~~~l---~~-~~~~-------~gs~iivTtR~~~------v~~~~~~~~~~~~l~~ 302 (512)
++|++|++... . . +..+ +. .... .+..+|.++.... +..........+.+..
T Consensus 1338 ~VlFiDEinmp~~d~yg~q~~lelLRq~le~gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rllRrf~vi~i~~ 1417 (2695)
T 4akg_A 1338 LVLFCDEINLPKLDKYGSQNVVLFLRQLMEKQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFTRHAAILYLGY 1417 (2695)
T ss_dssp EEEEEETTTCSCCCSSSCCHHHHHHHHHHHTSSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHHHTTEEEEECCC
T ss_pred EEEEecccccccccccCchhHHHHHHHHHhcCCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhhhheeeEEEeCC
Confidence 99999997432 1 1 1111 00 0001 1234455553321 1112223346788888
Q ss_pred CCHHHHHHHHHHHh
Q 010355 303 LNESEARDLFKKLV 316 (512)
Q Consensus 303 L~~~ea~~Lf~~~~ 316 (512)
.+.+.-..+|...+
T Consensus 1418 P~~~~l~~I~~~il 1431 (2695)
T 4akg_A 1418 PSGKSLSQIYEIYY 1431 (2695)
T ss_dssp CTTTHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 88888888877654
No 173
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=95.59 E-value=0.012 Score=50.87 Aligned_cols=28 Identities=21% Similarity=0.245 Sum_probs=24.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhhh
Q 010355 169 DVHMIGAYGMAGVGKTMLVKEVARQAKA 196 (512)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 196 (512)
..++++|.|..|+|||||+..++.....
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~l~~ 30 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAAAVR 30 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhhHh
Confidence 4578999999999999999999987764
No 174
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=95.59 E-value=0.029 Score=51.52 Aligned_cols=49 Identities=12% Similarity=0.240 Sum_probs=32.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCCCHHHHHHHH
Q 010355 170 VHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQI 221 (512)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~i 221 (512)
-.++.|.|.+|+|||+||.+++.....+ .-..++|++... +...+...+
T Consensus 30 G~l~~i~G~pG~GKT~l~l~~~~~~~~~-~~~~v~~~s~E~--~~~~~~~~~ 78 (251)
T 2zts_A 30 GTTVLLTGGTGTGKTTFAAQFIYKGAEE-YGEPGVFVTLEE--RARDLRREM 78 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHHH-HCCCEEEEESSS--CHHHHHHHH
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHh-cCCCceeecccC--CHHHHHHHH
Confidence 3689999999999999999987553221 123566666543 455555554
No 175
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=95.57 E-value=0.008 Score=53.65 Aligned_cols=25 Identities=24% Similarity=0.375 Sum_probs=22.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhh
Q 010355 170 VHMIGAYGMAGVGKTMLVKEVARQA 194 (512)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~v~~~~ 194 (512)
..+++|+|+.|+|||||++.++...
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhC
Confidence 3689999999999999999998764
No 176
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=95.57 E-value=0.0074 Score=53.55 Aligned_cols=25 Identities=20% Similarity=0.252 Sum_probs=22.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhhh
Q 010355 171 HMIGAYGMAGVGKTMLVKEVARQAK 195 (512)
Q Consensus 171 ~vi~I~G~gGiGKTtLa~~v~~~~~ 195 (512)
.+|+|.|++|+||||+|+.++....
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~l~ 37 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEKYG 37 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhC
Confidence 6899999999999999999988764
No 177
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=95.56 E-value=0.0064 Score=53.60 Aligned_cols=25 Identities=28% Similarity=0.359 Sum_probs=22.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhhh
Q 010355 171 HMIGAYGMAGVGKTMLVKEVARQAK 195 (512)
Q Consensus 171 ~vi~I~G~gGiGKTtLa~~v~~~~~ 195 (512)
++++|.|+.|+|||||++.+.....
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 5789999999999999999998764
No 178
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=95.56 E-value=0.0066 Score=52.55 Aligned_cols=25 Identities=32% Similarity=0.337 Sum_probs=22.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhhh
Q 010355 171 HMIGAYGMAGVGKTMLVKEVARQAK 195 (512)
Q Consensus 171 ~vi~I~G~gGiGKTtLa~~v~~~~~ 195 (512)
.+|.|.|++|+||||+|+.+.....
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALG 27 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC
Confidence 4689999999999999999988764
No 179
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=95.54 E-value=0.015 Score=53.62 Aligned_cols=28 Identities=14% Similarity=0.026 Sum_probs=24.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHhhh
Q 010355 168 PDVHMIGAYGMAGVGKTMLVKEVARQAK 195 (512)
Q Consensus 168 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 195 (512)
.....|+|.|++|+||||+|+.+.....
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~g 54 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKSHC 54 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3557899999999999999999987653
No 180
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=95.54 E-value=0.0081 Score=52.98 Aligned_cols=22 Identities=36% Similarity=0.436 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHH
Q 010355 171 HMIGAYGMAGVGKTMLVKEVAR 192 (512)
Q Consensus 171 ~vi~I~G~gGiGKTtLa~~v~~ 192 (512)
.+++|+|+.|+|||||++.++.
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 5789999999999999999975
No 181
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=95.53 E-value=0.011 Score=52.44 Aligned_cols=38 Identities=21% Similarity=0.238 Sum_probs=28.2
Q ss_pred HHHHHHHhcC-CCceEEEEEcCCCCcHHHHHHHHHHhhh
Q 010355 158 LNDVINALKN-PDVHMIGAYGMAGVGKTMLVKEVARQAK 195 (512)
Q Consensus 158 l~~l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 195 (512)
+..|..++.. +....+.|+|++|+||||+|..+++...
T Consensus 45 ~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a~ala~~l~ 83 (212)
T 1tue_A 45 LGALKSFLKGTPKKNCLVFCGPANTGKSYFGMSFIHFIQ 83 (212)
T ss_dssp HHHHHHHHHTCTTCSEEEEESCGGGCHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4455555543 2234799999999999999999988764
No 182
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=95.51 E-value=0.0086 Score=55.94 Aligned_cols=26 Identities=31% Similarity=0.519 Sum_probs=23.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhhh
Q 010355 170 VHMIGAYGMAGVGKTMLVKEVARQAK 195 (512)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 195 (512)
..+|.|.|++|+||||+|+.++....
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~ 29 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILS 29 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 46899999999999999999998754
No 183
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=95.51 E-value=0.0055 Score=53.61 Aligned_cols=26 Identities=27% Similarity=0.277 Sum_probs=19.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhhh
Q 010355 170 VHMIGAYGMAGVGKTMLVKEVARQAK 195 (512)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 195 (512)
..+|.|.|++|+||||+|+.+.....
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l~ 30 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERLP 30 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHST
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 46899999999999999999987754
No 184
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=95.50 E-value=0.0093 Score=55.40 Aligned_cols=28 Identities=18% Similarity=0.326 Sum_probs=23.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHhhh
Q 010355 168 PDVHMIGAYGMAGVGKTMLVKEVARQAK 195 (512)
Q Consensus 168 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 195 (512)
....+|+|.|++|+||||+|+.+.....
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~~lg 47 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQLLG 47 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 3567899999999999999999988654
No 185
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=95.49 E-value=0.009 Score=53.37 Aligned_cols=25 Identities=28% Similarity=0.327 Sum_probs=22.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhh
Q 010355 170 VHMIGAYGMAGVGKTMLVKEVARQA 194 (512)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~v~~~~ 194 (512)
..+++|+|+.|+|||||++.+....
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 3689999999999999999998765
No 186
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=95.49 E-value=0.0098 Score=53.02 Aligned_cols=26 Identities=19% Similarity=0.176 Sum_probs=22.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhhh
Q 010355 170 VHMIGAYGMAGVGKTMLVKEVARQAK 195 (512)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 195 (512)
...|+|.|++|+||||+|+.+.....
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l~ 45 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKLG 45 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45899999999999999999988764
No 187
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=95.49 E-value=0.0089 Score=53.21 Aligned_cols=26 Identities=23% Similarity=0.298 Sum_probs=23.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHh
Q 010355 168 PDVHMIGAYGMAGVGKTMLVKEVARQ 193 (512)
Q Consensus 168 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 193 (512)
.+..+|+|.|+.|+||||+++.+...
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC
Confidence 34678999999999999999999875
No 188
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=95.49 E-value=0.0094 Score=53.57 Aligned_cols=27 Identities=33% Similarity=0.432 Sum_probs=23.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhh
Q 010355 169 DVHMIGAYGMAGVGKTMLVKEVARQAK 195 (512)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 195 (512)
...+|+|+|+.|+|||||++.+.....
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 446899999999999999999988654
No 189
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=95.46 E-value=0.054 Score=54.12 Aligned_cols=57 Identities=18% Similarity=0.182 Sum_probs=35.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCCCHHH--HHHHHHHHhCCC
Q 010355 169 DVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKK--IQGQIADKLGLK 228 (512)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~--ll~~i~~~l~~~ 228 (512)
...+++|+|++|+||||++..++...... -..+..+... ...+.. .+.......+++
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~--g~~Vllvd~D-~~r~aa~~qL~~~~~~~gv~ 155 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGK--GRRPLLVAAD-TQRPAAREQLRLLGEKVGVP 155 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTT--TCCEEEEECC-SSCHHHHHHHHHHHHHHTCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEeecc-ccCchhHHHHHHhcccCCcc
Confidence 34789999999999999999999887643 2234444442 233222 233444455543
No 190
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=95.46 E-value=0.009 Score=52.62 Aligned_cols=26 Identities=19% Similarity=0.263 Sum_probs=22.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhhh
Q 010355 170 VHMIGAYGMAGVGKTMLVKEVARQAK 195 (512)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 195 (512)
..+|+|.|++|+||||+|+.++....
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l~ 31 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDFG 31 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999987654
No 191
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=95.46 E-value=0.0094 Score=52.96 Aligned_cols=27 Identities=19% Similarity=0.326 Sum_probs=23.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhh
Q 010355 169 DVHMIGAYGMAGVGKTMLVKEVARQAK 195 (512)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 195 (512)
..++|+|+|+.|+|||||++.+.....
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 457899999999999999999987654
No 192
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=95.43 E-value=0.0088 Score=54.37 Aligned_cols=25 Identities=32% Similarity=0.422 Sum_probs=22.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhhh
Q 010355 171 HMIGAYGMAGVGKTMLVKEVARQAK 195 (512)
Q Consensus 171 ~vi~I~G~gGiGKTtLa~~v~~~~~ 195 (512)
.+|+|+|++|+||||+++.+.....
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~g 30 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEALQ 30 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5899999999999999999987653
No 193
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=95.43 E-value=0.0098 Score=52.05 Aligned_cols=24 Identities=42% Similarity=0.509 Sum_probs=21.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhh
Q 010355 172 MIGAYGMAGVGKTMLVKEVARQAK 195 (512)
Q Consensus 172 vi~I~G~gGiGKTtLa~~v~~~~~ 195 (512)
.++|+|+.|+|||||++.++....
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 578999999999999999998765
No 194
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=95.41 E-value=0.0099 Score=51.15 Aligned_cols=24 Identities=21% Similarity=0.207 Sum_probs=21.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhh
Q 010355 172 MIGAYGMAGVGKTMLVKEVARQAK 195 (512)
Q Consensus 172 vi~I~G~gGiGKTtLa~~v~~~~~ 195 (512)
.|+|.|++|+||||+|+.+.....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~ 25 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLN 25 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999988764
No 195
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=95.39 E-value=0.01 Score=53.86 Aligned_cols=26 Identities=15% Similarity=0.160 Sum_probs=23.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhhh
Q 010355 170 VHMIGAYGMAGVGKTMLVKEVARQAK 195 (512)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 195 (512)
...|+|.|++|+||||+|+.++....
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l~ 29 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERFH 29 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 46799999999999999999988764
No 196
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=95.36 E-value=0.038 Score=52.95 Aligned_cols=29 Identities=24% Similarity=0.352 Sum_probs=24.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHhhhh
Q 010355 168 PDVHMIGAYGMAGVGKTMLVKEVARQAKA 196 (512)
Q Consensus 168 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 196 (512)
....+|+|.|+.|+|||||++.++.....
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll~~ 116 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALLAR 116 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhccc
Confidence 34579999999999999999999887653
No 197
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=95.35 E-value=0.01 Score=54.85 Aligned_cols=27 Identities=19% Similarity=0.249 Sum_probs=23.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhh
Q 010355 169 DVHMIGAYGMAGVGKTMLVKEVARQAK 195 (512)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 195 (512)
...+|+|+|++|+|||||++.++....
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg 52 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFG 52 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 357899999999999999999997654
No 198
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=95.35 E-value=0.01 Score=53.28 Aligned_cols=27 Identities=22% Similarity=0.156 Sum_probs=23.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhhhh
Q 010355 170 VHMIGAYGMAGVGKTMLVKEVARQAKA 196 (512)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~v~~~~~~ 196 (512)
..+|+|.|+.|+||||+++.+......
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~~ 36 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLKN 36 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 468999999999999999999987653
No 199
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=95.33 E-value=0.0085 Score=53.45 Aligned_cols=25 Identities=24% Similarity=0.398 Sum_probs=22.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhhh
Q 010355 171 HMIGAYGMAGVGKTMLVKEVARQAK 195 (512)
Q Consensus 171 ~vi~I~G~gGiGKTtLa~~v~~~~~ 195 (512)
+.++|+|+.|+|||||++.+.....
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCc
Confidence 5789999999999999999987653
No 200
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=95.32 E-value=0.011 Score=52.25 Aligned_cols=24 Identities=33% Similarity=0.440 Sum_probs=21.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhh
Q 010355 172 MIGAYGMAGVGKTMLVKEVARQAK 195 (512)
Q Consensus 172 vi~I~G~gGiGKTtLa~~v~~~~~ 195 (512)
+|+|.|+.|+||||+++.+.....
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~ 25 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLK 25 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999998764
No 201
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=95.31 E-value=0.011 Score=53.12 Aligned_cols=27 Identities=19% Similarity=0.187 Sum_probs=24.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhhhh
Q 010355 170 VHMIGAYGMAGVGKTMLVKEVARQAKA 196 (512)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~v~~~~~~ 196 (512)
..+|+|.|+.|+||||+++.+......
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l~~ 35 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEALCA 35 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 468999999999999999999988753
No 202
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=95.31 E-value=0.037 Score=56.21 Aligned_cols=50 Identities=14% Similarity=0.193 Sum_probs=36.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCCCHHHHHHHHH
Q 010355 170 VHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIA 222 (512)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~i~ 222 (512)
..++.|.|.+|+|||||+.+++...... .-..++|++... +...+...++
T Consensus 203 G~liiI~G~pG~GKTtl~l~ia~~~~~~-~g~~Vl~~s~E~--s~~~l~~r~~ 252 (454)
T 2r6a_A 203 SDLIIVAARPSVGKTAFALNIAQNVATK-TNENVAIFSLEM--SAQQLVMRML 252 (454)
T ss_dssp TCEEEEECCTTSCHHHHHHHHHHHHHHH-SSCCEEEEESSS--CHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHh-CCCcEEEEECCC--CHHHHHHHHH
Confidence 3689999999999999999999876542 123577776543 4566666654
No 203
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=95.30 E-value=0.011 Score=57.60 Aligned_cols=52 Identities=15% Similarity=0.106 Sum_probs=35.3
Q ss_pred HHHHHHhcC-CCceEEEEEcCCCCcHHHHHHHHHHhhhhcC-CCCeEEEEEeCCC
Q 010355 159 NDVINALKN-PDVHMIGAYGMAGVGKTMLVKEVARQAKADK-LFDEVVYAEVSQR 211 (512)
Q Consensus 159 ~~l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-~f~~~~wv~~~~~ 211 (512)
-++++.+.. ..-.-++|+|.+|+|||+|+..+++.....+ .+. ++++-+++.
T Consensus 163 iraID~l~PigrGQR~lIfg~~g~GKT~Ll~~Ia~~i~~~~~dv~-~V~~lIGER 216 (427)
T 3l0o_A 163 TRLIDLFAPIGKGQRGMIVAPPKAGKTTILKEIANGIAENHPDTI-RIILLIDER 216 (427)
T ss_dssp HHHHHHHSCCBTTCEEEEEECTTCCHHHHHHHHHHHHHHHCTTSE-EEEEECSCC
T ss_pred chhhhhcccccCCceEEEecCCCCChhHHHHHHHHHHhhcCCCeE-EEEEEeccC
Confidence 345566652 3346789999999999999999998765321 222 355666654
No 204
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=95.29 E-value=0.0095 Score=53.20 Aligned_cols=22 Identities=27% Similarity=0.434 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHH
Q 010355 171 HMIGAYGMAGVGKTMLVKEVAR 192 (512)
Q Consensus 171 ~vi~I~G~gGiGKTtLa~~v~~ 192 (512)
.+|+|+|+.|+||||+++.++.
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 4799999999999999999987
No 205
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=95.28 E-value=0.049 Score=56.10 Aligned_cols=56 Identities=14% Similarity=0.099 Sum_probs=39.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHH-hCCC
Q 010355 170 VHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIADK-LGLK 228 (512)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~i~~~-l~~~ 228 (512)
-.++.|.|.+|+||||||.+++...... +-..++|++... +..++...++.. .+.+
T Consensus 242 G~l~li~G~pG~GKT~lal~~a~~~a~~-~g~~vl~~s~E~--s~~~l~~r~~~~~~~~~ 298 (503)
T 1q57_A 242 GEVIMVTSGSGMVMSTFVRQQALQWGTA-MGKKVGLAMLEE--SVEETAEDLIGLHNRVR 298 (503)
T ss_dssp TCEEEEEESSCHHHHHHHHHHHHHHTTT-SCCCEEEEESSS--CHHHHHHHHHHHHTTSC
T ss_pred CeEEEEeecCCCCchHHHHHHHHHHHHh-cCCcEEEEeccC--CHHHHHHHHHHHHcCCC
Confidence 3688999999999999999999876532 123577776644 566777776543 4443
No 206
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=95.27 E-value=0.022 Score=54.48 Aligned_cols=43 Identities=14% Similarity=0.231 Sum_probs=32.1
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCC
Q 010355 167 NPDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQR 211 (512)
Q Consensus 167 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~ 211 (512)
....++|+|+|-||+||||+|..++...... -..++-|++...
T Consensus 38 ~~~~~vI~v~~KGGvGKTT~a~nLA~~La~~--G~~VlliD~D~~ 80 (307)
T 3end_A 38 ITGAKVFAVYGKGGIGKSTTSSNLSAAFSIL--GKRVLQIGCDPK 80 (307)
T ss_dssp --CCEEEEEECSTTSSHHHHHHHHHHHHHHT--TCCEEEEEESSS
T ss_pred cCCceEEEEECCCCccHHHHHHHHHHHHHHC--CCeEEEEeCCCC
Confidence 4467899999999999999999999887643 235666776543
No 207
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=95.25 E-value=0.036 Score=64.47 Aligned_cols=84 Identities=17% Similarity=0.221 Sum_probs=53.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCC------CCchHHHHHHHH
Q 010355 170 VHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIADKLGLKFYE------ESESGRARKLCE 243 (512)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~i~~~l~~~~~~------~~~~~~~~~l~~ 243 (512)
..++.|.|.+|+||||||.+++...... -..++|++........ . ++.++..... .+.......+..
T Consensus 732 G~lVlI~G~PG~GKTtLal~lA~~aa~~--g~~VlyiS~Ees~~ql--~---A~~lGvd~~~L~i~~~~~leei~~~l~~ 804 (1706)
T 3cmw_A 732 GRIVEIYGPESSGKTTLTLQVIAAAQRE--GKTCAFIDAEHALDPI--Y---ARKLGVDIDNLLCSQPDTGEQALEICDA 804 (1706)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHHT--TCCEEEECTTSCCCHH--H---HHHTTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCcHHHHHHHHHHHHHc--CCCeEEEeccchHHHH--H---HHHcCCChhheEEecCCcHHHHHHHHHH
Confidence 4689999999999999999999877642 2367888776665442 2 5666654221 122223333333
Q ss_pred HHhCCCeEEEEEeCCCC
Q 010355 244 RLKKEKKILVILDDIWT 260 (512)
Q Consensus 244 ~l~~~k~~LlVlDdv~~ 260 (512)
.....+.-+||+|.+..
T Consensus 805 lv~~~~~~lVVIDsLq~ 821 (1706)
T 3cmw_A 805 LARSGAVDVIVVDSVAA 821 (1706)
T ss_dssp HHHHTCCSEEEESCSTT
T ss_pred HHHccCCCEEEEechhh
Confidence 33335677999999853
No 208
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=95.24 E-value=0.01 Score=54.06 Aligned_cols=26 Identities=15% Similarity=0.231 Sum_probs=22.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhhh
Q 010355 170 VHMIGAYGMAGVGKTMLVKEVARQAK 195 (512)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 195 (512)
...|+|.|++|+||||+|+.++....
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l~ 32 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHFE 32 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHSS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 46799999999999999999987653
No 209
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=95.22 E-value=0.015 Score=54.06 Aligned_cols=27 Identities=22% Similarity=0.226 Sum_probs=23.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhh
Q 010355 169 DVHMIGAYGMAGVGKTMLVKEVARQAK 195 (512)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 195 (512)
...+|.|+|++|+||||+|+.+.....
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 357899999999999999999987653
No 210
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=95.21 E-value=0.01 Score=53.92 Aligned_cols=26 Identities=12% Similarity=0.075 Sum_probs=23.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhhh
Q 010355 170 VHMIGAYGMAGVGKTMLVKEVARQAK 195 (512)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 195 (512)
...|+|.|++|+||||+++.++....
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46789999999999999999998764
No 211
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=95.20 E-value=0.012 Score=52.74 Aligned_cols=25 Identities=32% Similarity=0.570 Sum_probs=22.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhh
Q 010355 170 VHMIGAYGMAGVGKTMLVKEVARQA 194 (512)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~v~~~~ 194 (512)
..+|+|+|++|+|||||++.+....
T Consensus 21 ~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 21 TFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhc
Confidence 4789999999999999999987653
No 212
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=95.20 E-value=0.043 Score=64.68 Aligned_cols=83 Identities=17% Similarity=0.225 Sum_probs=54.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCC------CCchHHHHHHHH
Q 010355 170 VHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIADKLGLKFYE------ESESGRARKLCE 243 (512)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~i~~~l~~~~~~------~~~~~~~~~l~~ 243 (512)
..++.|+|++|+||||||.+++...... -..++|++.....+.. .++.++.+... .+.......+..
T Consensus 383 G~lilI~G~pGsGKTtLaLqia~~~a~~--G~~vlyis~E~s~~~~-----~a~~lGvd~~~L~I~~~~~~e~il~~~~~ 455 (2050)
T 3cmu_A 383 GRIVEIYGPESSGKTTLTLQVIAAAQRE--GKTCAFIDAEHALDPI-----YARKLGVDIDNLLCSQPDTGEQALEICDA 455 (2050)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHHHTT--TCCEEEECTTSCCCHH-----HHHHTTCCTTTCEEECCSSHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHhc--CCeEEEEEcCCCHHHH-----HHHHcCCCHHHeEEeCCCCHHHHHHHHHH
Confidence 4799999999999999999999877632 3468888887766653 25666654321 122222333332
Q ss_pred HHhCCCeEEEEEeCCC
Q 010355 244 RLKKEKKILVILDDIW 259 (512)
Q Consensus 244 ~l~~~k~~LlVlDdv~ 259 (512)
.....+.-+||+|.+.
T Consensus 456 lv~~~~~~lIVIDSL~ 471 (2050)
T 3cmu_A 456 LARSGAVDVIVVDSVA 471 (2050)
T ss_dssp HHHHTCCSEEEESCGG
T ss_pred HHHhcCCcEEEECCHH
Confidence 2334567799999984
No 213
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=95.18 E-value=0.0098 Score=51.62 Aligned_cols=21 Identities=24% Similarity=0.468 Sum_probs=18.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHH
Q 010355 170 VHMIGAYGMAGVGKTMLVKEV 190 (512)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~v 190 (512)
..+++|+|+.|+|||||++.+
T Consensus 9 gei~~l~G~nGsGKSTl~~~~ 29 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKKH 29 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHH
Confidence 468999999999999999963
No 214
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=95.18 E-value=0.012 Score=53.06 Aligned_cols=24 Identities=21% Similarity=0.365 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhh
Q 010355 172 MIGAYGMAGVGKTMLVKEVARQAK 195 (512)
Q Consensus 172 vi~I~G~gGiGKTtLa~~v~~~~~ 195 (512)
.|+|.|++|+||||+|+.++....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~ 25 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYE 25 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999987653
No 215
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=95.16 E-value=0.01 Score=51.50 Aligned_cols=36 Identities=22% Similarity=0.257 Sum_probs=27.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEE
Q 010355 171 HMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYA 206 (512)
Q Consensus 171 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv 206 (512)
++++|+|..|+|||||++.+.........-.+.+.+
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~ 38 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKR 38 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEE
Confidence 689999999999999999999877643222344443
No 216
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=95.14 E-value=0.057 Score=52.07 Aligned_cols=58 Identities=24% Similarity=0.239 Sum_probs=37.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCC-CCCHHHHHHHHHHHhCC
Q 010355 168 PDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQ-RPDVKKIQGQIADKLGL 227 (512)
Q Consensus 168 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~-~~~~~~ll~~i~~~l~~ 227 (512)
....+++|+|+.|+|||||++.++...... -..+.++.... .....+-+......++.
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~--~g~V~l~g~D~~r~~a~eql~~~~~~~gv 185 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNH--GFSVVIAASDTFRAGAIEQLEEHAKRIGV 185 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHHT--TCCEEEEEECCSSTTHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhc--CCEEEEEeecccccchHHHHHHHHHHcCc
Confidence 456899999999999999999999877642 12344443322 22344445555566654
No 217
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=95.13 E-value=0.012 Score=52.62 Aligned_cols=22 Identities=27% Similarity=0.422 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHH
Q 010355 171 HMIGAYGMAGVGKTMLVKEVAR 192 (512)
Q Consensus 171 ~vi~I~G~gGiGKTtLa~~v~~ 192 (512)
.+|+|.|+.|+||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999975
No 218
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=95.12 E-value=0.0069 Score=54.51 Aligned_cols=24 Identities=29% Similarity=0.547 Sum_probs=22.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhh
Q 010355 172 MIGAYGMAGVGKTMLVKEVARQAK 195 (512)
Q Consensus 172 vi~I~G~gGiGKTtLa~~v~~~~~ 195 (512)
+|+|.|+.|+||||+++.+.....
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999998765
No 219
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=95.10 E-value=0.034 Score=56.55 Aligned_cols=43 Identities=28% Similarity=0.380 Sum_probs=32.2
Q ss_pred chHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHhhhhc
Q 010355 154 RMSTLNDVINALKNPDVHMIGAYGMAGVGKTMLVKEVARQAKAD 197 (512)
Q Consensus 154 R~~~l~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~ 197 (512)
....+..+..++.... +.+.|.|.+|+|||+++..++......
T Consensus 30 Q~~av~~~~~~i~~~~-~~~li~G~aGTGKT~ll~~~~~~l~~~ 72 (459)
T 3upu_A 30 QKNAFNIVMKAIKEKK-HHVTINGPAGTGATTLTKFIIEALIST 72 (459)
T ss_dssp HHHHHHHHHHHHHSSS-CEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcCC-CEEEEEeCCCCCHHHHHHHHHHHHHhc
Confidence 4445566666665443 489999999999999999998877643
No 220
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=95.08 E-value=0.013 Score=52.14 Aligned_cols=25 Identities=20% Similarity=0.178 Sum_probs=22.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhh
Q 010355 170 VHMIGAYGMAGVGKTMLVKEVARQA 194 (512)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~v~~~~ 194 (512)
...|+|.|+.|+||||+++.+....
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3689999999999999999998865
No 221
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=95.08 E-value=0.043 Score=63.80 Aligned_cols=83 Identities=17% Similarity=0.198 Sum_probs=60.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCC------CCchHHHHHHHH
Q 010355 170 VHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIADKLGLKFYE------ESESGRARKLCE 243 (512)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~i~~~l~~~~~~------~~~~~~~~~l~~ 243 (512)
-++|-|+|+.|+||||||.++...... .-..++|+.+....++.. ++.+|..... ......+..+..
T Consensus 1431 g~~iei~g~~~sGkttl~~~~~a~~~~--~g~~~~~i~~e~~~~~~~-----~~~~Gv~~~~l~~~~p~~~e~~l~~~~~ 1503 (1706)
T 3cmw_A 1431 GRIVEIYGPESSGKTTLTLQVIAAAQR--EGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICDA 1503 (1706)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHH--TTCCEEEECTTSCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHh--cCCeEEEEecCCCCCHHH-----HHHcCCCHHHeEEeCCCcHHHHHHHHHH
Confidence 479999999999999999999876553 356788998887777653 7778876443 222334444555
Q ss_pred HHhCCCeEEEEEeCCC
Q 010355 244 RLKKEKKILVILDDIW 259 (512)
Q Consensus 244 ~l~~~k~~LlVlDdv~ 259 (512)
.++.+..-+||+|-|-
T Consensus 1504 ~~~s~~~~~vvvDsv~ 1519 (1706)
T 3cmw_A 1504 LARSGAVDVIVVDSVA 1519 (1706)
T ss_dssp HHHHTCCSEEEESCST
T ss_pred HHHcCCCCEEEEccHH
Confidence 5566778899999883
No 222
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=95.06 E-value=0.013 Score=52.77 Aligned_cols=24 Identities=17% Similarity=0.264 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhh
Q 010355 172 MIGAYGMAGVGKTMLVKEVARQAK 195 (512)
Q Consensus 172 vi~I~G~gGiGKTtLa~~v~~~~~ 195 (512)
.|+|.|++|+||||+|+.++....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~ 25 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYG 25 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999987653
No 223
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=95.05 E-value=0.015 Score=53.99 Aligned_cols=27 Identities=30% Similarity=0.356 Sum_probs=23.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhh
Q 010355 169 DVHMIGAYGMAGVGKTMLVKEVARQAK 195 (512)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 195 (512)
...+|+|.|+.|+|||||++.++....
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La~~Lg 52 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALAESLN 52 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcC
Confidence 346899999999999999999997764
No 224
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=95.04 E-value=0.024 Score=49.26 Aligned_cols=26 Identities=23% Similarity=0.368 Sum_probs=23.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhhh
Q 010355 170 VHMIGAYGMAGVGKTMLVKEVARQAK 195 (512)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 195 (512)
.++++|+|..|+|||||+..+.....
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~ 31 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALC 31 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhcc
Confidence 57899999999999999999988765
No 225
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=95.03 E-value=0.016 Score=51.33 Aligned_cols=26 Identities=23% Similarity=0.392 Sum_probs=23.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhh
Q 010355 169 DVHMIGAYGMAGVGKTMLVKEVARQA 194 (512)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 194 (512)
...+|+|+|+.|+||||+++.+....
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNKY 36 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHhc
Confidence 45789999999999999999998764
No 226
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=95.02 E-value=0.014 Score=61.74 Aligned_cols=48 Identities=19% Similarity=0.197 Sum_probs=40.1
Q ss_pred cCccccccchHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHhhh
Q 010355 146 KGYEAFESRMSTLNDVINALKNPDVHMIGAYGMAGVGKTMLVKEVARQAK 195 (512)
Q Consensus 146 ~~~~~~~gR~~~l~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 195 (512)
.....++|....++.+...+..+ ..+.|+|++|+||||||+.++....
T Consensus 38 ~~l~~i~G~~~~l~~l~~~i~~g--~~vll~Gp~GtGKTtlar~ia~~l~ 85 (604)
T 3k1j_A 38 KLIDQVIGQEHAVEVIKTAANQK--RHVLLIGEPGTGKSMLGQAMAELLP 85 (604)
T ss_dssp SHHHHCCSCHHHHHHHHHHHHTT--CCEEEECCTTSSHHHHHHHHHHTSC
T ss_pred cccceEECchhhHhhccccccCC--CEEEEEeCCCCCHHHHHHHHhccCC
Confidence 34567889998888888777755 5789999999999999999998764
No 227
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=95.01 E-value=0.013 Score=52.58 Aligned_cols=26 Identities=19% Similarity=0.285 Sum_probs=23.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhhh
Q 010355 170 VHMIGAYGMAGVGKTMLVKEVARQAK 195 (512)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 195 (512)
-.+++|+|+.|+|||||++.+.....
T Consensus 20 Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 20 GRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 46899999999999999999987653
No 228
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=94.99 E-value=0.017 Score=51.91 Aligned_cols=28 Identities=25% Similarity=0.234 Sum_probs=24.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHhhh
Q 010355 168 PDVHMIGAYGMAGVGKTMLVKEVARQAK 195 (512)
Q Consensus 168 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 195 (512)
....+|+|.|+.|+||||+++.+.....
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3457899999999999999999988765
No 229
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=94.98 E-value=0.078 Score=53.52 Aligned_cols=50 Identities=14% Similarity=0.092 Sum_probs=36.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCCCHHHHHHHHHH
Q 010355 170 VHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIAD 223 (512)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~i~~ 223 (512)
..++.|.|.+|+||||||.+++.....+ -..++|++... +..++...++.
T Consensus 197 G~liiIaG~pG~GKTtlal~ia~~~a~~--g~~vl~fSlEm--s~~ql~~R~~~ 246 (444)
T 3bgw_A 197 RNFVLIAARPSMGKTAFALKQAKNMSDN--DDVVNLHSLEM--GKKENIKRLIV 246 (444)
T ss_dssp SCEEEEEECSSSSHHHHHHHHHHHHHHT--TCEEEEECSSS--CTTHHHHHHHH
T ss_pred CcEEEEEeCCCCChHHHHHHHHHHHHHc--CCEEEEEECCC--CHHHHHHHHHH
Confidence 3689999999999999999999887643 23577776543 44455555544
No 230
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=94.96 E-value=0.017 Score=55.29 Aligned_cols=28 Identities=25% Similarity=0.401 Sum_probs=24.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhhh
Q 010355 169 DVHMIGAYGMAGVGKTMLVKEVARQAKA 196 (512)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 196 (512)
...+++|+|++|+|||||++.++.....
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~ 128 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQN 128 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHh
Confidence 4579999999999999999999987764
No 231
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=94.91 E-value=0.16 Score=51.49 Aligned_cols=42 Identities=26% Similarity=0.313 Sum_probs=30.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCCC
Q 010355 169 DVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPD 213 (512)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~ 213 (512)
...+++|+|..|+|||||++.++...... .+.+++.....+.
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll~~~---~G~V~l~g~D~~r 333 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQFEQQ---GKSVMLAAGDTFR 333 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHHHHT---TCCEEEECCCTTC
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHhhhc---CCeEEEecCcccc
Confidence 45799999999999999999999877532 3445554444443
No 232
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=94.89 E-value=0.019 Score=50.02 Aligned_cols=26 Identities=19% Similarity=0.216 Sum_probs=23.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhhh
Q 010355 170 VHMIGAYGMAGVGKTMLVKEVARQAK 195 (512)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 195 (512)
..+|+|.|+.|+||||+++.+.....
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~l~ 30 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEYLV 30 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 46889999999999999999988764
No 233
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=94.89 E-value=0.013 Score=53.19 Aligned_cols=25 Identities=28% Similarity=0.426 Sum_probs=22.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhh
Q 010355 170 VHMIGAYGMAGVGKTMLVKEVARQA 194 (512)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~v~~~~ 194 (512)
..+++|+|+.|+|||||++.++...
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3689999999999999999998765
No 234
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=94.88 E-value=0.019 Score=52.97 Aligned_cols=26 Identities=19% Similarity=0.354 Sum_probs=23.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhh
Q 010355 169 DVHMIGAYGMAGVGKTMLVKEVARQA 194 (512)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 194 (512)
...+|+|.|+.|+|||||++.++...
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 44789999999999999999998765
No 235
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=94.86 E-value=0.016 Score=58.14 Aligned_cols=46 Identities=28% Similarity=0.313 Sum_probs=34.2
Q ss_pred ccccchHHHHHHHHHhcC--------------CCceEEEEEcCCCCcHHHHHHHHHHhhh
Q 010355 150 AFESRMSTLNDVINALKN--------------PDVHMIGAYGMAGVGKTMLVKEVARQAK 195 (512)
Q Consensus 150 ~~~gR~~~l~~l~~~L~~--------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 195 (512)
.++|.+..+..|..++.. ...+-|.++|++|+|||++|+.++....
T Consensus 16 ~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~ 75 (444)
T 1g41_A 16 HIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLAN 75 (444)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred HhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcC
Confidence 457777766666554421 1346689999999999999999998775
No 236
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=94.86 E-value=0.048 Score=49.89 Aligned_cols=52 Identities=13% Similarity=0.202 Sum_probs=35.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCCCHHHHHHHHH
Q 010355 170 VHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIA 222 (512)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~i~ 222 (512)
...|+|.|+.|+||||+++.++...... .+..+....-+........++.++
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l~~~-~~~~~~~~rep~~t~~g~~ir~~l 78 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETLQQN-GIDHITRTREPGGTLLAEKLRALV 78 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHHHHT-TCCCEEEEESSCSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhc-CCCeeeeecCCCCCHHHHHHHHHH
Confidence 4689999999999999999999987653 455344444333333344444444
No 237
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=94.85 E-value=0.018 Score=49.20 Aligned_cols=27 Identities=26% Similarity=0.316 Sum_probs=23.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHhh
Q 010355 168 PDVHMIGAYGMAGVGKTMLVKEVARQA 194 (512)
Q Consensus 168 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 194 (512)
..-.+++|.|+.|+|||||++.++...
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 344789999999999999999999876
No 238
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=94.84 E-value=0.018 Score=52.26 Aligned_cols=26 Identities=15% Similarity=0.247 Sum_probs=23.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhhh
Q 010355 170 VHMIGAYGMAGVGKTMLVKEVARQAK 195 (512)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 195 (512)
..+++|+|+.|+|||||++.++....
T Consensus 16 G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 16 GTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCC
Confidence 46899999999999999999988654
No 239
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=94.78 E-value=0.052 Score=48.83 Aligned_cols=52 Identities=15% Similarity=0.157 Sum_probs=36.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCCCHHHHHHHHHH
Q 010355 171 HMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIAD 223 (512)
Q Consensus 171 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~i~~ 223 (512)
..|+|.|+.|+||||+++.++...... .+..+++..-+....+...++.++.
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~l~~~-~~~~v~~~rep~~t~~g~~ir~~l~ 55 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVETLEQL-GIRDMVFTREPGGTQLAEKLRSLLL 55 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHHT-TCCCEEEEESSCSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHc-CCCcceeeeCCCCCHHHHHHHHHHh
Confidence 578999999999999999999988653 3434444444333345555666654
No 240
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=94.77 E-value=0.014 Score=52.73 Aligned_cols=25 Identities=20% Similarity=0.263 Sum_probs=22.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhhh
Q 010355 171 HMIGAYGMAGVGKTMLVKEVARQAK 195 (512)
Q Consensus 171 ~vi~I~G~gGiGKTtLa~~v~~~~~ 195 (512)
..|+|.|++|+||||+|+.++....
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l~ 30 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEYG 30 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5789999999999999999988764
No 241
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=94.77 E-value=0.054 Score=51.44 Aligned_cols=52 Identities=19% Similarity=0.169 Sum_probs=35.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHH
Q 010355 170 VHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIADK 224 (512)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~i~~~ 224 (512)
-.+++|.|++|+|||||++.++....... -..++|+.... +...+...+...
T Consensus 35 G~~~~i~G~~G~GKTTl~~~ia~~~~~~~-G~~v~~~~~e~--~~~~~~~r~~~~ 86 (296)
T 1cr0_A 35 GEVIMVTSGSGMGKSTFVRQQALQWGTAM-GKKVGLAMLEE--SVEETAEDLIGL 86 (296)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHHHHHHTS-CCCEEEEESSS--CHHHHHHHHHHH
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHHc-CCeEEEEeCcC--CHHHHHHHHHHH
Confidence 36899999999999999999988765421 11466666543 445555555443
No 242
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=94.77 E-value=0.042 Score=53.21 Aligned_cols=49 Identities=22% Similarity=0.184 Sum_probs=36.0
Q ss_pred hcCCCceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCCCHH
Q 010355 165 LKNPDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVK 215 (512)
Q Consensus 165 L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 215 (512)
+.....+++.+.|.||+||||+|..++...... -..++-|+.....++.
T Consensus 11 l~~~~~~i~~~sgkGGvGKTt~a~~lA~~la~~--g~~vllid~D~~~~l~ 59 (334)
T 3iqw_A 11 LDQRSLRWIFVGGKGGVGKTTTSCSLAIQLAKV--RRSVLLLSTDPAHNLS 59 (334)
T ss_dssp HHCTTCCEEEEECSTTSSHHHHHHHHHHHHTTS--SSCEEEEECCSSCHHH
T ss_pred hcCCCeEEEEEeCCCCccHHHHHHHHHHHHHhC--CCcEEEEECCCCCChh
Confidence 344557889999999999999999999887643 3456677776554433
No 243
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=94.75 E-value=0.019 Score=51.46 Aligned_cols=24 Identities=25% Similarity=0.393 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhh
Q 010355 172 MIGAYGMAGVGKTMLVKEVARQAK 195 (512)
Q Consensus 172 vi~I~G~gGiGKTtLa~~v~~~~~ 195 (512)
+|.|.|++|+||||.|+.++..+.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g 25 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKG 25 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
Confidence 578999999999999999998764
No 244
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=94.71 E-value=0.069 Score=52.23 Aligned_cols=38 Identities=21% Similarity=0.413 Sum_probs=29.6
Q ss_pred HHHHHHHhc--CCCceEEEEEcCCCCcHHHHHHHHHHhhh
Q 010355 158 LNDVINALK--NPDVHMIGAYGMAGVGKTMLVKEVARQAK 195 (512)
Q Consensus 158 l~~l~~~L~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 195 (512)
...++..+. .....+|+|+|.+|+|||||+..++....
T Consensus 65 ~~~~~~~~~~~~~~~~~I~i~G~~G~GKSTl~~~L~~~l~ 104 (355)
T 3p32_A 65 AQQLLLRLLPDSGNAHRVGITGVPGVGKSTAIEALGMHLI 104 (355)
T ss_dssp HHHHHHHHGGGCCCSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHhHhhcCCceEEEEECCCCCCHHHHHHHHHHHHH
Confidence 344454444 45678999999999999999999987764
No 245
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=94.71 E-value=0.04 Score=50.27 Aligned_cols=28 Identities=29% Similarity=0.305 Sum_probs=24.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhhh
Q 010355 169 DVHMIGAYGMAGVGKTMLVKEVARQAKA 196 (512)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 196 (512)
....|+|.|+.|+||||+++.++.....
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~~ 52 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRLVK 52 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 3478999999999999999999988763
No 246
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=94.71 E-value=0.022 Score=52.13 Aligned_cols=26 Identities=19% Similarity=0.112 Sum_probs=23.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhhh
Q 010355 170 VHMIGAYGMAGVGKTMLVKEVARQAK 195 (512)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 195 (512)
...|+|.|++|+||||+|+.++....
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l~ 41 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNFC 41 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35789999999999999999998764
No 247
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=94.71 E-value=0.063 Score=48.33 Aligned_cols=52 Identities=10% Similarity=0.038 Sum_probs=33.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCCCHHHHHHHHHH
Q 010355 170 VHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIAD 223 (512)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~i~~ 223 (512)
...|+|.|+.|+||||+++.+....... .+.. +...-+........++.++.
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~l~~~-~~~v-~~~~~p~~~~~g~~i~~~l~ 57 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAERLRER-GIEV-QLTREPGGTPLAERIRELLL 57 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHTT-TCCE-EEEESSCSSHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHHHc-CCCc-ccccCCCCCHHHHHHHHHHh
Confidence 3689999999999999999999887643 2433 33333322223344555443
No 248
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=94.69 E-value=0.022 Score=51.43 Aligned_cols=23 Identities=22% Similarity=0.325 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHH
Q 010355 170 VHMIGAYGMAGVGKTMLVKEVAR 192 (512)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~v~~ 192 (512)
..+|+|.|+.|+||||+++.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999976
No 249
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=94.68 E-value=0.02 Score=51.01 Aligned_cols=25 Identities=20% Similarity=0.294 Sum_probs=22.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhhh
Q 010355 171 HMIGAYGMAGVGKTMLVKEVARQAK 195 (512)
Q Consensus 171 ~vi~I~G~gGiGKTtLa~~v~~~~~ 195 (512)
++|+|.|+.|+||||+++.++....
T Consensus 3 ~~i~i~G~~GsGKst~~~~la~~lg 27 (208)
T 3ake_A 3 GIVTIDGPSASGKSSVARRVAAALG 27 (208)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 3899999999999999999988654
No 250
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=94.67 E-value=0.021 Score=55.20 Aligned_cols=25 Identities=36% Similarity=0.389 Sum_probs=22.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhhh
Q 010355 171 HMIGAYGMAGVGKTMLVKEVARQAK 195 (512)
Q Consensus 171 ~vi~I~G~gGiGKTtLa~~v~~~~~ 195 (512)
.+|+|.|+.|+||||||..++....
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 5899999999999999999988754
No 251
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=94.65 E-value=0.02 Score=51.99 Aligned_cols=24 Identities=25% Similarity=0.203 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhh
Q 010355 172 MIGAYGMAGVGKTMLVKEVARQAK 195 (512)
Q Consensus 172 vi~I~G~gGiGKTtLa~~v~~~~~ 195 (512)
.|+|.|++|+||||+++.++....
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg 25 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYS 25 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 588999999999999999987653
No 252
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=94.65 E-value=0.021 Score=52.16 Aligned_cols=26 Identities=27% Similarity=0.409 Sum_probs=23.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhhh
Q 010355 170 VHMIGAYGMAGVGKTMLVKEVARQAK 195 (512)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 195 (512)
..+|+|.|++|+||||+++.++....
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg 34 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALG 34 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 36899999999999999999988764
No 253
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=94.64 E-value=0.018 Score=50.90 Aligned_cols=25 Identities=32% Similarity=0.418 Sum_probs=22.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhhh
Q 010355 171 HMIGAYGMAGVGKTMLVKEVARQAK 195 (512)
Q Consensus 171 ~vi~I~G~gGiGKTtLa~~v~~~~~ 195 (512)
.+++|+|+.|+|||||++.++....
T Consensus 2 ~~i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHHH
T ss_pred CEEEEECCCCChHHHHHHHHHhhcc
Confidence 3689999999999999999988764
No 254
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=94.62 E-value=0.052 Score=49.16 Aligned_cols=57 Identities=18% Similarity=0.113 Sum_probs=35.7
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCCCHHHHHHHHHH
Q 010355 167 NPDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIAD 223 (512)
Q Consensus 167 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~i~~ 223 (512)
......|+|.|+.|+||||+++.+.........+..++...-+........++.++.
T Consensus 18 ~~~~~~i~~~G~~g~GKst~~~~l~~~l~~~~g~~v~~~treP~~t~~g~~ir~~l~ 74 (223)
T 3ld9_A 18 GPGSMFITFEGIDGSGKTTQSHLLAEYLSEIYGVNNVVLTREPGGTLLNESVRNLLF 74 (223)
T ss_dssp -CCCEEEEEECSTTSSHHHHHHHHHHHHHHHHCGGGEEEEESSCSSHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhccCceeeEeeeCCCCChHHHHHHHHHh
Confidence 345678999999999999999999988764112333331333333334455555554
No 255
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=94.62 E-value=0.017 Score=53.41 Aligned_cols=26 Identities=35% Similarity=0.325 Sum_probs=23.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhhh
Q 010355 170 VHMIGAYGMAGVGKTMLVKEVARQAK 195 (512)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 195 (512)
..+|+|+|+.|+||||+++.++....
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 36799999999999999999998764
No 256
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=94.61 E-value=0.048 Score=53.13 Aligned_cols=48 Identities=21% Similarity=0.246 Sum_probs=34.9
Q ss_pred hcCCCceEEEEEcCCCCcHHHHHHHHHHhhh--hcCCCCeEEEEEeCCCCCH
Q 010355 165 LKNPDVHMIGAYGMAGVGKTMLVKEVARQAK--ADKLFDEVVYAEVSQRPDV 214 (512)
Q Consensus 165 L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~--~~~~f~~~~wv~~~~~~~~ 214 (512)
+.....+++.+.|.||+||||+|..++.... .. -..++-|+.....++
T Consensus 13 l~~~~~~i~~~~gkGGvGKTt~a~~lA~~la~~~~--g~~vllid~D~~~~l 62 (348)
T 3io3_A 13 VQHDSLKWIFVGGKGGVGKTTTSSSVAVQLALAQP--NEQFLLISTDPAHNL 62 (348)
T ss_dssp HTCTTCSEEEEECSTTSSHHHHHHHHHHHHHHHCT--TSCEEEEECCSSCHH
T ss_pred hcCCCcEEEEEeCCCCCcHHHHHHHHHHHHHHhcC--CCeEEEEECCCCCCh
Confidence 3455678999999999999999999988776 32 235666666644433
No 257
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=94.61 E-value=0.02 Score=51.60 Aligned_cols=24 Identities=17% Similarity=0.069 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhh
Q 010355 172 MIGAYGMAGVGKTMLVKEVARQAK 195 (512)
Q Consensus 172 vi~I~G~gGiGKTtLa~~v~~~~~ 195 (512)
.|+|.|++|+||||+|+.++....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g 25 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYG 25 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999988653
No 258
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=94.61 E-value=0.021 Score=54.00 Aligned_cols=24 Identities=21% Similarity=0.540 Sum_probs=21.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHH
Q 010355 169 DVHMIGAYGMAGVGKTMLVKEVAR 192 (512)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~v~~ 192 (512)
...+|+|.|+.|+||||+|+.+..
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999983
No 259
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=94.55 E-value=0.022 Score=54.65 Aligned_cols=25 Identities=28% Similarity=0.200 Sum_probs=22.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhhh
Q 010355 171 HMIGAYGMAGVGKTMLVKEVARQAK 195 (512)
Q Consensus 171 ~vi~I~G~gGiGKTtLa~~v~~~~~ 195 (512)
++|+|+|+.|+||||||..++....
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~ 30 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALP 30 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 5899999999999999999988653
No 260
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=94.54 E-value=0.023 Score=53.99 Aligned_cols=26 Identities=23% Similarity=0.319 Sum_probs=22.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhhh
Q 010355 170 VHMIGAYGMAGVGKTMLVKEVARQAK 195 (512)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 195 (512)
.++|+|.|+.|+||||||..++....
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~~ 28 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRLN 28 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhCc
Confidence 36899999999999999999987653
No 261
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=94.51 E-value=0.034 Score=55.85 Aligned_cols=89 Identities=20% Similarity=0.259 Sum_probs=55.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhhhhcCC--CCeEEEEEeCCCC-CHHHHHHHHHHHhCCC-------CCCCCch-----
Q 010355 171 HMIGAYGMAGVGKTMLVKEVARQAKADKL--FDEVVYAEVSQRP-DVKKIQGQIADKLGLK-------FYEESES----- 235 (512)
Q Consensus 171 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~--f~~~~wv~~~~~~-~~~~ll~~i~~~l~~~-------~~~~~~~----- 235 (512)
.-++|.|.+|+|||+|+.++++.....+. -+.++++-+++.. ...+++..+...-.+. ....+..
T Consensus 153 Qr~~Ifgg~G~GKt~Ll~~Ia~~~~~n~~~~~~~~V~~~iGER~~Ev~e~~~~~~~~g~m~rtvvV~~tsd~p~~~r~~~ 232 (469)
T 2c61_A 153 QKLPIFSASGLPHNEIALQIARQASVPGSESAFAVVFAAMGITNEEAQYFMSDFEKTGALERAVVFLNLADDPAVERIVT 232 (469)
T ss_dssp CBCCEEECTTSCHHHHHHHHHHHCBCTTCSSCEEEEEEEEEECHHHHHHHHHHHHHHSGGGGEEEEEEETTSCHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhhccCCCCcEEEEEEccCCcHHHHHHHHHHHhccCccceEEEEECCCCCHHHHHHH
Confidence 45678899999999999999988764221 1356677776554 4556666665432111 0111111
Q ss_pred -HHHHHHHHHHh--CCCeEEEEEeCCC
Q 010355 236 -GRARKLCERLK--KEKKILVILDDIW 259 (512)
Q Consensus 236 -~~~~~l~~~l~--~~k~~LlVlDdv~ 259 (512)
.....+.++++ +++.+||++||+.
T Consensus 233 ~~~a~tiAEyfrdd~G~dVLl~~Dslt 259 (469)
T 2c61_A 233 PRMALTAAEYLAYEHGMHVLVILTDIT 259 (469)
T ss_dssp HHHHHHHHHHHHHHHCCEEEEEEECHH
T ss_pred HHHHHHHHHHHHHhcCCeEEEEEeCHH
Confidence 12335566665 5899999999973
No 262
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=94.51 E-value=0.075 Score=53.11 Aligned_cols=89 Identities=19% Similarity=0.213 Sum_probs=54.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhhhhcC-CC-CeEEEEEeCCCC-CHHHHHHHHHHHhCCC-------CCCCCch-----
Q 010355 171 HMIGAYGMAGVGKTMLVKEVARQAKADK-LF-DEVVYAEVSQRP-DVKKIQGQIADKLGLK-------FYEESES----- 235 (512)
Q Consensus 171 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~-~f-~~~~wv~~~~~~-~~~~ll~~i~~~l~~~-------~~~~~~~----- 235 (512)
.-++|.|.+|+|||+|+.++++...... +- -.++++-+++.. ...+++..+...-... ....+..
T Consensus 152 Qr~~Ifgg~G~GKt~L~~~Ia~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~~~~~g~~~rtvvV~atsd~p~~~r~~a 231 (465)
T 3vr4_D 152 QKLPVFSGSGLPHKELAAQIARQATVLDSSDDFAVVFAAIGITFEEAEFFMEDFRQTGAIDRSVMFMNLANDPAIERIAT 231 (465)
T ss_dssp CBCCEEECTTSCHHHHHHHHHHHCBCSSCSSCEEEEEEEEEECHHHHHHHHHHHHHHTGGGGEEEEEEETTSCHHHHHHH
T ss_pred CEEEEeCCCCcChHHHHHHHHHHHHhccCCCceEEEEEEecCCcHHHHHHHHHHhhcCCccceEEEEECCCCCHHHHHHH
Confidence 4468899999999999999998765311 11 156677776554 4556666654421111 1111111
Q ss_pred -HHHHHHHHHHh--CCCeEEEEEeCCC
Q 010355 236 -GRARKLCERLK--KEKKILVILDDIW 259 (512)
Q Consensus 236 -~~~~~l~~~l~--~~k~~LlVlDdv~ 259 (512)
.....+.++++ .++.+||++||+.
T Consensus 232 ~~~a~tiAEyfrd~~G~~VLl~~DslT 258 (465)
T 3vr4_D 232 PRMALTAAEYLAYEKGMHVLVIMTDMT 258 (465)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEEECHH
T ss_pred HHHHHHHHHHHHHhcCCeEEEEEcChH
Confidence 12335667776 3899999999984
No 263
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=94.47 E-value=0.026 Score=53.88 Aligned_cols=28 Identities=29% Similarity=0.344 Sum_probs=24.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhhh
Q 010355 169 DVHMIGAYGMAGVGKTMLVKEVARQAKA 196 (512)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 196 (512)
...+++|+|+.|+|||||++.++.....
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~l~~ 126 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHRLKN 126 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 3479999999999999999999987653
No 264
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=94.37 E-value=0.015 Score=53.14 Aligned_cols=25 Identities=20% Similarity=0.275 Sum_probs=16.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHH-Hhh
Q 010355 170 VHMIGAYGMAGVGKTMLVKEVA-RQA 194 (512)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~v~-~~~ 194 (512)
..+++|+|+.|+|||||++.++ ...
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC---
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 3689999999999999999998 654
No 265
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=94.34 E-value=0.022 Score=54.82 Aligned_cols=26 Identities=23% Similarity=0.358 Sum_probs=22.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhhh
Q 010355 170 VHMIGAYGMAGVGKTMLVKEVARQAK 195 (512)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 195 (512)
.++|+|+|+.|+|||||+..++....
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~l~ 65 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAHFP 65 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTTSC
T ss_pred CceEEEECCCCCCHHHHHHHHHHHCC
Confidence 46899999999999999999987653
No 266
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=94.33 E-value=0.031 Score=53.02 Aligned_cols=27 Identities=26% Similarity=0.165 Sum_probs=23.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhh
Q 010355 169 DVHMIGAYGMAGVGKTMLVKEVARQAK 195 (512)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 195 (512)
..++|+|.|+.|+||||||..++....
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~~~~ 35 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRKILP 35 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCcEEEEECCCccCHHHHHHHHHHhCC
Confidence 347899999999999999999987653
No 267
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=94.30 E-value=0.067 Score=48.29 Aligned_cols=39 Identities=21% Similarity=0.152 Sum_probs=28.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCC
Q 010355 171 HMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQR 211 (512)
Q Consensus 171 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~ 211 (512)
-.|.+.|.||+||||+|..++.....+. + .++.+.+...
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l~~~G-~-~V~v~d~D~q 45 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQLRQG-V-RVMAGVVETH 45 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTT-C-CEEEEECCCT
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCC-C-CEEEEEeCCC
Confidence 4578899999999999999988876432 2 3455555443
No 268
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=94.29 E-value=0.04 Score=51.14 Aligned_cols=27 Identities=33% Similarity=0.397 Sum_probs=23.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhh
Q 010355 169 DVHMIGAYGMAGVGKTMLVKEVARQAK 195 (512)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 195 (512)
...++.+.|.||+|||||+..++....
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~~l~ 39 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGRYLE 39 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 357889999999999999999987765
No 269
>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*
Probab=94.28 E-value=0.16 Score=52.00 Aligned_cols=95 Identities=17% Similarity=0.277 Sum_probs=56.9
Q ss_pred HHHHhc-CCCceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCC-CHHHHHHHHHH----HhCCCC-----
Q 010355 161 VINALK-NPDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRP-DVKKIQGQIAD----KLGLKF----- 229 (512)
Q Consensus 161 l~~~L~-~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~ll~~i~~----~l~~~~----- 229 (512)
+++.|. -.+-.-++|.|..|+|||+|+.++++... -+.++++-++... ...+++..+-+ .+|...
T Consensus 222 vID~l~PigrGqr~~Ifgg~g~GKT~L~~~ia~~~~----~~v~V~~~iGER~~Ev~e~~~~~~el~d~~~G~~~m~rtv 297 (600)
T 3vr4_A 222 VIDTFFPVTKGGAAAVPGPFGAGKTVVQHQIAKWSD----VDLVVYVGCGERGNEMTDVVNEFPELIDPNTGESLMERTV 297 (600)
T ss_dssp HHHHHSCCBTTCEEEEECCTTSCHHHHHHHHHHHSS----CSEEEEEEEEECHHHHHHHHHHTTTCBCTTTCSBGGGGEE
T ss_pred hhhccCCccCCCEEeeecCCCccHHHHHHHHHhccC----CCEEEEEEecccHHHHHHHHHHHHhhcccccccccccceE
Confidence 445554 23346789999999999999999988643 3567888887663 34445444322 122110
Q ss_pred -----CCCCchH------HHHHHHHHHh-CCCeEEEEEeCCC
Q 010355 230 -----YEESESG------RARKLCERLK-KEKKILVILDDIW 259 (512)
Q Consensus 230 -----~~~~~~~------~~~~l~~~l~-~~k~~LlVlDdv~ 259 (512)
...+... ....+.++++ .++.+||++|++.
T Consensus 298 vV~~tsd~p~~~R~~~~~~altiAEyfrd~G~dVLl~~Ds~t 339 (600)
T 3vr4_A 298 LIANTSNMPVAAREASIYTGITIAEYFRDMGYDVAIMADSTS 339 (600)
T ss_dssp EEEEETTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECHH
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEecchH
Confidence 0011111 1234455554 4789999999984
No 270
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=94.28 E-value=0.045 Score=52.65 Aligned_cols=39 Identities=21% Similarity=0.205 Sum_probs=29.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeC
Q 010355 169 DVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVS 209 (512)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~ 209 (512)
...+|+|+|.+|+||||++..++...... -..+.++...
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~l~~~--g~kVllid~D 142 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANYYAEL--GYKVLIAAAD 142 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHHHHHT--TCCEEEEECC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHC--CCeEEEEeCC
Confidence 45799999999999999999999877642 2345555443
No 271
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=94.28 E-value=0.11 Score=53.14 Aligned_cols=95 Identities=17% Similarity=0.240 Sum_probs=57.2
Q ss_pred HHHHhc-CCCceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCCC-HHHHHHHHHH----HhCC-------
Q 010355 161 VINALK-NPDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPD-VKKIQGQIAD----KLGL------- 227 (512)
Q Consensus 161 l~~~L~-~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~-~~~ll~~i~~----~l~~------- 227 (512)
+++.|. -.+-.-++|.|..|+|||+|+.++++... -+.++++-+++... ..+++..+-+ .++.
T Consensus 217 vID~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~~----~~~~V~~~iGER~~Ev~e~~~~~~el~d~~~g~~~m~rtv 292 (588)
T 3mfy_A 217 VIDTFFPQAKGGTAAIPGPAGSGKTVTQHQLAKWSD----AQVVIYIGCGERGNEMTDVLEEFPKLKDPKTGKPLMERTV 292 (588)
T ss_dssp HHHHHSCEETTCEEEECSCCSHHHHHHHHHHHHHSS----CSEEEEEECCSSSSHHHHHHHHTTTCEETTTTEEGGGGEE
T ss_pred hhhccCCcccCCeEEeecCCCCCHHHHHHHHHhccC----CCEEEEEEecccHHHHHHHHHHHHHhcccccccccccceE
Confidence 445554 12346789999999999999999877633 35778888887664 4455555422 1110
Q ss_pred ---CCCCCCchH------HHHHHHHHHh-CCCeEEEEEeCCC
Q 010355 228 ---KFYEESESG------RARKLCERLK-KEKKILVILDDIW 259 (512)
Q Consensus 228 ---~~~~~~~~~------~~~~l~~~l~-~~k~~LlVlDdv~ 259 (512)
.....+... ....+.++++ .++.+||++|++.
T Consensus 293 vV~~tsd~p~~~r~~~~~~a~tiAEyfrd~G~dVLl~~Dslt 334 (588)
T 3mfy_A 293 LIANTSNMPVAAREASIYTGITIAEYFRDMGYDVALMADSTS 334 (588)
T ss_dssp EEECCTTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECTT
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEeecchH
Confidence 000111111 1223444554 4799999999995
No 272
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=94.24 E-value=0.055 Score=50.46 Aligned_cols=38 Identities=16% Similarity=0.315 Sum_probs=29.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCC
Q 010355 171 HMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQ 210 (512)
Q Consensus 171 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~ 210 (512)
++|+|.|.||+||||+|..++...... -..++-|+...
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~la~~--G~~VlliD~D~ 39 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSGLHAM--GKTIMVVGCDP 39 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHTT--TCCEEEEEECT
T ss_pred cEEEEecCCCCcHHHHHHHHHHHHHHC--CCcEEEEcCCC
Confidence 578889999999999999999887643 23566676653
No 273
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=94.24 E-value=0.03 Score=53.61 Aligned_cols=28 Identities=18% Similarity=0.157 Sum_probs=24.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHhhh
Q 010355 168 PDVHMIGAYGMAGVGKTMLVKEVARQAK 195 (512)
Q Consensus 168 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 195 (512)
....+|+|.|+.|+|||||++.+.....
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3457999999999999999999988654
No 274
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=94.24 E-value=0.051 Score=50.49 Aligned_cols=37 Identities=19% Similarity=0.222 Sum_probs=29.1
Q ss_pred HHHHHHHhcCC--CceEEEEEcCCCCcHHHHHHHHHHhh
Q 010355 158 LNDVINALKNP--DVHMIGAYGMAGVGKTMLVKEVARQA 194 (512)
Q Consensus 158 l~~l~~~L~~~--~~~vi~I~G~gGiGKTtLa~~v~~~~ 194 (512)
+..+..||... ....|.|+|++|+|||.||..+++..
T Consensus 90 ~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~~ 128 (267)
T 1u0j_A 90 ASVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHTV 128 (267)
T ss_dssp HHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred HHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhhh
Confidence 44566777743 24579999999999999999999864
No 275
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=94.22 E-value=0.027 Score=51.80 Aligned_cols=24 Identities=21% Similarity=0.333 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhh
Q 010355 171 HMIGAYGMAGVGKTMLVKEVARQA 194 (512)
Q Consensus 171 ~vi~I~G~gGiGKTtLa~~v~~~~ 194 (512)
.+++|+|+.|+|||||.+.++...
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 789999999999999999988654
No 276
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=94.20 E-value=0.052 Score=51.36 Aligned_cols=40 Identities=15% Similarity=0.288 Sum_probs=30.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCC
Q 010355 170 VHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQR 211 (512)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~ 211 (512)
.++|+|.|.||+||||+|..++...... -..++-|++...
T Consensus 2 MkvIavs~KGGvGKTT~a~nLA~~La~~--G~rVlliD~D~q 41 (289)
T 2afh_E 2 MRQCAIYGKGGIGKSTTTQNLVAALAEM--GKKVMIVGCDPK 41 (289)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHHHT--TCCEEEEEECSS
T ss_pred ceEEEEeCCCcCcHHHHHHHHHHHHHHC--CCeEEEEecCCC
Confidence 4688889999999999999999887643 235666666543
No 277
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=94.16 E-value=0.028 Score=53.50 Aligned_cols=23 Identities=26% Similarity=0.447 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHh
Q 010355 171 HMIGAYGMAGVGKTMLVKEVARQ 193 (512)
Q Consensus 171 ~vi~I~G~gGiGKTtLa~~v~~~ 193 (512)
.+|.|.|++|+||||+|+.+...
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 57899999999999999999874
No 278
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=94.15 E-value=0.016 Score=55.06 Aligned_cols=27 Identities=15% Similarity=0.292 Sum_probs=20.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhh
Q 010355 169 DVHMIGAYGMAGVGKTMLVKEVARQAK 195 (512)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 195 (512)
+..+|+|.|..|+||||+|+.+.....
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg 30 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFR 30 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHh
Confidence 456899999999999999999988654
No 279
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=94.12 E-value=0.023 Score=52.09 Aligned_cols=25 Identities=16% Similarity=0.335 Sum_probs=21.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhh
Q 010355 170 VHMIGAYGMAGVGKTMLVKEVARQA 194 (512)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~v~~~~ 194 (512)
-.+++|+|+.|+|||||++.++.-.
T Consensus 31 Ge~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 31 GEFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCC
Confidence 4689999999999999999987654
No 280
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=94.11 E-value=0.03 Score=49.85 Aligned_cols=36 Identities=22% Similarity=0.153 Sum_probs=21.6
Q ss_pred HHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHhh
Q 010355 159 NDVINALKNPDVHMIGAYGMAGVGKTMLVKEVARQA 194 (512)
Q Consensus 159 ~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 194 (512)
+.+.........--|+|+|.+|+|||||+..+....
T Consensus 19 ~~m~~~~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~ 54 (204)
T 4gzl_A 19 SHMENLYFQGQAIKCVVVGDGAVGKTCLLISYTTNA 54 (204)
T ss_dssp -----------CEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred hHHHhHhhcCCeEEEEEECcCCCCHHHHHHHHHhCC
Confidence 333333344455678899999999999999988653
No 281
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=94.07 E-value=0.084 Score=46.84 Aligned_cols=50 Identities=16% Similarity=0.174 Sum_probs=35.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCCCHHHHHHHHHH
Q 010355 172 MIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIAD 223 (512)
Q Consensus 172 vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~i~~ 223 (512)
.|+|-|.-|+||||.++.+++..... ...+++..-+......+.++.++.
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L~~~--g~~v~~treP~~t~~~~~ir~~l~ 51 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYLEKR--GKKVILKREPGGTETGEKIRKILL 51 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHT--TCCEEEEESSCSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC--CCcEEEEECCCCCcHHHHHHHHhh
Confidence 47889999999999999999988753 334555554444455555555554
No 282
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=94.04 E-value=0.026 Score=56.64 Aligned_cols=28 Identities=29% Similarity=0.542 Sum_probs=23.9
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHHHhh
Q 010355 167 NPDVHMIGAYGMAGVGKTMLVKEVARQA 194 (512)
Q Consensus 167 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 194 (512)
.....+|.|+|++|+||||+|+.++...
T Consensus 255 ~~~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 255 SPNPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp CSSCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 3456899999999999999999987654
No 283
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=94.04 E-value=0.036 Score=54.18 Aligned_cols=28 Identities=29% Similarity=0.344 Sum_probs=24.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhhh
Q 010355 169 DVHMIGAYGMAGVGKTMLVKEVARQAKA 196 (512)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 196 (512)
...+++|+|+.|+|||||++.++.....
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l~~ 183 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRLKN 183 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhccc
Confidence 3479999999999999999999987753
No 284
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=94.03 E-value=0.036 Score=46.81 Aligned_cols=24 Identities=25% Similarity=0.430 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhh
Q 010355 171 HMIGAYGMAGVGKTMLVKEVARQA 194 (512)
Q Consensus 171 ~vi~I~G~gGiGKTtLa~~v~~~~ 194 (512)
+-|+|+|.+|+|||||+..+....
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 568999999999999999998653
No 285
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=93.97 E-value=0.024 Score=51.54 Aligned_cols=25 Identities=20% Similarity=0.311 Sum_probs=21.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhh
Q 010355 170 VHMIGAYGMAGVGKTMLVKEVARQA 194 (512)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~v~~~~ 194 (512)
-.+++|+|+.|+|||||++.++...
T Consensus 30 Ge~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 30 GEFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp TCEEEEEECTTSCHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3689999999999999999987654
No 286
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=93.92 E-value=0.053 Score=55.46 Aligned_cols=45 Identities=9% Similarity=-0.119 Sum_probs=32.8
Q ss_pred cccchHHHHHHHHHhc--CCCceEEEEEcCCCCcHHHHHHHHHHhhh
Q 010355 151 FESRMSTLNDVINALK--NPDVHMIGAYGMAGVGKTMLVKEVARQAK 195 (512)
Q Consensus 151 ~~gR~~~l~~l~~~L~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 195 (512)
...|.+..+.+.+... ..+..+|.|.|++|+||||+|+.++....
T Consensus 374 ~f~rpeV~~vLr~~~~~~~~~~~~I~l~GlsGsGKSTIa~~La~~L~ 420 (511)
T 1g8f_A 374 WFSYPEVVKILRESNPPRPKQGFSIVLGNSLTVSREQLSIALLSTFL 420 (511)
T ss_dssp TTSCHHHHHHHHHHSCCGGGCCEEEEECTTCCSCHHHHHHHHHHHHT
T ss_pred cccChhhHHHHHHhcccccccceEEEecccCCCCHHHHHHHHHHHHH
Confidence 3355555455555442 23457899999999999999999999886
No 287
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=93.90 E-value=0.097 Score=52.28 Aligned_cols=89 Identities=20% Similarity=0.258 Sum_probs=54.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhhhhc--------CCCC-eEEEEEeCCCC-CHHHHHHHHHHHhCCC-------CCCCC
Q 010355 171 HMIGAYGMAGVGKTMLVKEVARQAKAD--------KLFD-EVVYAEVSQRP-DVKKIQGQIADKLGLK-------FYEES 233 (512)
Q Consensus 171 ~vi~I~G~gGiGKTtLa~~v~~~~~~~--------~~f~-~~~wv~~~~~~-~~~~ll~~i~~~l~~~-------~~~~~ 233 (512)
.-++|.|.+|+|||+|+.++++..... .+-+ .++++-+++.. ...+++..+...-... ....+
T Consensus 148 Qr~~Ifgg~G~GKt~L~~~Ia~~~~a~~~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~l~~~g~~~rtvvv~~t~d~p 227 (464)
T 3gqb_B 148 QKLPIFSGSGLPANEIAAQIARQATVRPDLSGEGEKEEPFAVVFAAMGITQRELSYFIQEFERTGALSRSVLFLNKADDP 227 (464)
T ss_dssp CBCCEEEETTSCHHHHHHHHHHHCBCCHHHHCCCSTTCCEEEEEEEEEECHHHHHHHHHHHHHTSGGGGEEEEEEETTSC
T ss_pred CEEEEecCCCCCchHHHHHHHHHHHhcccccccccCCCceEEEEEEecCchHHHHHHHHHhhhcccccceEEEEECCCCC
Confidence 456788999999999999998876531 1111 56677776554 4555666554321011 01111
Q ss_pred ch------HHHHHHHHHHh--CCCeEEEEEeCCC
Q 010355 234 ES------GRARKLCERLK--KEKKILVILDDIW 259 (512)
Q Consensus 234 ~~------~~~~~l~~~l~--~~k~~LlVlDdv~ 259 (512)
.. .....+.++++ .++.+||++||+.
T Consensus 228 ~~~r~~~~~~a~tiAEyfrd~~G~~VLl~~DdlT 261 (464)
T 3gqb_B 228 TIERILTPRMALTVAEYLAFEHDYHVLVILTDMT 261 (464)
T ss_dssp THHHHHHHHHHHHHHHHHHHTTCCEEEEEEETHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCeEEEEEcChH
Confidence 11 12335666776 3899999999984
No 288
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=93.89 E-value=0.033 Score=49.04 Aligned_cols=25 Identities=28% Similarity=0.460 Sum_probs=21.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhh
Q 010355 170 VHMIGAYGMAGVGKTMLVKEVARQA 194 (512)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~v~~~~ 194 (512)
.-.|+|+|.+|+|||||++.+....
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCC
Confidence 4578999999999999999998754
No 289
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=93.88 E-value=0.027 Score=49.75 Aligned_cols=25 Identities=24% Similarity=0.229 Sum_probs=22.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhh
Q 010355 170 VHMIGAYGMAGVGKTMLVKEVARQA 194 (512)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~v~~~~ 194 (512)
.+.|.|.|++|+||||||..++...
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhC
Confidence 3678999999999999999998764
No 290
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=93.88 E-value=0.023 Score=50.99 Aligned_cols=23 Identities=39% Similarity=0.421 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHh
Q 010355 171 HMIGAYGMAGVGKTMLVKEVARQ 193 (512)
Q Consensus 171 ~vi~I~G~gGiGKTtLa~~v~~~ 193 (512)
.+++|+|+.|+|||||++.++..
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 68999999999999999999876
No 291
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=93.88 E-value=0.038 Score=51.50 Aligned_cols=109 Identities=14% Similarity=0.115 Sum_probs=56.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCC-CCCHHHHHHHHH--HHhCCCCCCCCchHHHHHHHHHH
Q 010355 169 DVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQ-RPDVKKIQGQIA--DKLGLKFYEESESGRARKLCERL 245 (512)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~-~~~~~~ll~~i~--~~l~~~~~~~~~~~~~~~l~~~l 245 (512)
...+++|+|+.|+|||||++.++...... +.+.+++.-.. .+-.... ..++ ..++.. .......+...|
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~~l~g~~~~~--~~G~I~~~g~~i~~~~~~~-~~~v~q~~~gl~-----~~~l~~~la~aL 95 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIASMIDYINQT--KSYHIITIEDPIEYVFKHK-KSIVNQREVGED-----TKSFADALRAAL 95 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHHHHHHHHHHH--CCCEEEEEESSCCSCCCCS-SSEEEEEEBTTT-----BSCHHHHHHHHH
T ss_pred CCCEEEEECCCCccHHHHHHHHHHhCCCC--CCCEEEEcCCcceeecCCc-ceeeeHHHhCCC-----HHHHHHHHHHHH
Confidence 44789999999999999999998765431 23333332111 0000000 0000 011111 112234555556
Q ss_pred hCCCeEEEEEeCCCChhhhhhhCCCCCCCCeEEEEEeCCcch
Q 010355 246 KKEKKILVILDDIWTNLDLENVGIPFGVRGCRVLMTARSQDV 287 (512)
Q Consensus 246 ~~~k~~LlVlDdv~~~~~~~~l~~~~~~~gs~iivTtR~~~v 287 (512)
.. ++=+|++|...+......+... ...|..||+||.....
T Consensus 96 ~~-~p~illlDEp~D~~~~~~~l~~-~~~g~~vl~t~H~~~~ 135 (261)
T 2eyu_A 96 RE-DPDVIFVGEMRDLETVETALRA-AETGHLVFGTLHTNTA 135 (261)
T ss_dssp HH-CCSEEEESCCCSHHHHHHHHHH-HHTTCEEEEEECCSSH
T ss_pred hh-CCCEEEeCCCCCHHHHHHHHHH-HccCCEEEEEeCcchH
Confidence 54 5668888998755443322111 1346668888887653
No 292
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=93.82 E-value=0.04 Score=47.08 Aligned_cols=23 Identities=22% Similarity=0.355 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHh
Q 010355 171 HMIGAYGMAGVGKTMLVKEVARQ 193 (512)
Q Consensus 171 ~vi~I~G~gGiGKTtLa~~v~~~ 193 (512)
..|+|+|.+|+|||||...+...
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 56899999999999999998753
No 293
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=93.82 E-value=0.029 Score=51.55 Aligned_cols=26 Identities=19% Similarity=0.397 Sum_probs=22.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhhh
Q 010355 170 VHMIGAYGMAGVGKTMLVKEVARQAK 195 (512)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 195 (512)
-.+++|+|+.|+|||||++.++....
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 56 (237)
T 2cbz_A 31 GALVAVVGQVGCGKSSLLSALLAEMD 56 (237)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTCSE
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 46899999999999999999986543
No 294
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=93.80 E-value=0.073 Score=48.86 Aligned_cols=40 Identities=20% Similarity=0.377 Sum_probs=30.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCCCH
Q 010355 173 IGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDV 214 (512)
Q Consensus 173 i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~ 214 (512)
|+|.|.||+||||+|..++...... -..++-|+.....+.
T Consensus 3 I~vs~kGGvGKTt~a~~LA~~la~~--g~~VlliD~D~~~~l 42 (254)
T 3kjh_A 3 LAVAGKGGVGKTTVAAGLIKIMASD--YDKIYAVDGDPDSCL 42 (254)
T ss_dssp EEEECSSSHHHHHHHHHHHHHHTTT--CSCEEEEEECTTSCH
T ss_pred EEEecCCCCCHHHHHHHHHHHHHHC--CCeEEEEeCCCCcCh
Confidence 5669999999999999999888743 245777777655443
No 295
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=93.79 E-value=0.049 Score=47.74 Aligned_cols=26 Identities=23% Similarity=0.147 Sum_probs=22.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhh
Q 010355 169 DVHMIGAYGMAGVGKTMLVKEVARQA 194 (512)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 194 (512)
....|+|+|.+|+|||||+..+....
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45688999999999999999988653
No 296
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=93.75 E-value=0.036 Score=49.11 Aligned_cols=23 Identities=30% Similarity=0.473 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHh
Q 010355 171 HMIGAYGMAGVGKTMLVKEVARQ 193 (512)
Q Consensus 171 ~vi~I~G~gGiGKTtLa~~v~~~ 193 (512)
..|+|+|.+|+|||||.+.+...
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHhcC
Confidence 46889999999999999999875
No 297
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=93.73 E-value=0.036 Score=51.35 Aligned_cols=24 Identities=29% Similarity=0.310 Sum_probs=21.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHh
Q 010355 170 VHMIGAYGMAGVGKTMLVKEVARQ 193 (512)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~v~~~ 193 (512)
-.+++|+|+.|+|||||++.++..
T Consensus 29 Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 29 GEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 368999999999999999999874
No 298
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=93.73 E-value=0.03 Score=52.65 Aligned_cols=25 Identities=24% Similarity=0.315 Sum_probs=21.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhh
Q 010355 170 VHMIGAYGMAGVGKTMLVKEVARQA 194 (512)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~v~~~~ 194 (512)
-.+++|+|+.|+|||||++.++.-.
T Consensus 34 Ge~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 34 GEVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp TSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHHcCC
Confidence 3689999999999999999987654
No 299
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=93.71 E-value=0.03 Score=52.26 Aligned_cols=26 Identities=19% Similarity=0.327 Sum_probs=22.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhh
Q 010355 169 DVHMIGAYGMAGVGKTMLVKEVARQA 194 (512)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 194 (512)
.-.+++|+|+.|+|||||++.++...
T Consensus 31 ~Ge~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34689999999999999999987654
No 300
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=93.71 E-value=0.033 Score=52.49 Aligned_cols=42 Identities=21% Similarity=0.221 Sum_probs=29.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhhhhcCC--------CCeEEEEEeCCC
Q 010355 170 VHMIGAYGMAGVGKTMLVKEVARQAKADKL--------FDEVVYAEVSQR 211 (512)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~--------f~~~~wv~~~~~ 211 (512)
-.++.|+|++|+|||||+..++........ -..++|++....
T Consensus 30 G~i~~i~G~~GsGKTtl~~~l~~~~~~g~~~~g~~~~~~~~v~~~~~e~~ 79 (279)
T 1nlf_A 30 GTVGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPAEDP 79 (279)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHTCCCTTCCCCCCCCCEEEEESSSC
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHhcCCCcCCCccCCCccEEEEECCCC
Confidence 378999999999999999999875542110 134667766543
No 301
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=93.70 E-value=0.046 Score=47.98 Aligned_cols=26 Identities=19% Similarity=0.036 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhhhh
Q 010355 171 HMIGAYGMAGVGKTMLVKEVARQAKA 196 (512)
Q Consensus 171 ~vi~I~G~gGiGKTtLa~~v~~~~~~ 196 (512)
.++.|+|+.|+||||++.+++.....
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~~~ 29 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIYKL 29 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 57889999999999999877776543
No 302
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=93.69 E-value=0.12 Score=53.51 Aligned_cols=37 Identities=30% Similarity=0.368 Sum_probs=27.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEe
Q 010355 170 VHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEV 208 (512)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~ 208 (512)
-.+++|.|.+|+|||||++.++...... -..++++..
T Consensus 281 G~i~~i~G~~GsGKSTLl~~l~g~~~~~--G~~vi~~~~ 317 (525)
T 1tf7_A 281 DSIILATGATGTGKTLLVSRFVENACAN--KERAILFAY 317 (525)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHHTT--TCCEEEEES
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHhC--CCCEEEEEE
Confidence 3689999999999999999999776532 123455543
No 303
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=93.68 E-value=0.042 Score=50.46 Aligned_cols=26 Identities=23% Similarity=0.298 Sum_probs=23.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhhh
Q 010355 170 VHMIGAYGMAGVGKTMLVKEVARQAK 195 (512)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 195 (512)
...|+|.|..|+||||+++.++....
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 36799999999999999999998763
No 304
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=93.66 E-value=0.03 Score=48.91 Aligned_cols=22 Identities=27% Similarity=0.472 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHh
Q 010355 172 MIGAYGMAGVGKTMLVKEVARQ 193 (512)
Q Consensus 172 vi~I~G~gGiGKTtLa~~v~~~ 193 (512)
-|+|+|.+|+|||||++.++..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999998763
No 305
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=93.66 E-value=0.066 Score=48.68 Aligned_cols=27 Identities=22% Similarity=0.288 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhhhh
Q 010355 170 VHMIGAYGMAGVGKTMLVKEVARQAKA 196 (512)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~v~~~~~~ 196 (512)
...|+|.|+.|+||||+++.++.....
T Consensus 25 g~~I~~eG~~GsGKsT~~~~l~~~l~~ 51 (227)
T 3v9p_A 25 GKFITFEGIDGAGKTTHLQWFCDRLQE 51 (227)
T ss_dssp CCEEEEECCC---CHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 468999999999999999999988764
No 306
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=93.65 E-value=0.047 Score=49.94 Aligned_cols=27 Identities=26% Similarity=0.286 Sum_probs=23.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhh
Q 010355 169 DVHMIGAYGMAGVGKTMLVKEVARQAK 195 (512)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 195 (512)
...+|+|.|+.|+||||+++.++....
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~~lg 41 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAKDFG 41 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHHHHC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 456899999999999999999987653
No 307
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=93.62 E-value=0.078 Score=47.01 Aligned_cols=43 Identities=16% Similarity=0.185 Sum_probs=31.6
Q ss_pred eEEEEE-cCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCCCHH
Q 010355 171 HMIGAY-GMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVK 215 (512)
Q Consensus 171 ~vi~I~-G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 215 (512)
++|+|+ +.||+||||+|..++...... -..++.++.....+..
T Consensus 2 ~vi~v~s~kgG~GKTt~a~~la~~la~~--g~~vlliD~D~~~~~~ 45 (206)
T 4dzz_A 2 KVISFLNPKGGSGKTTAVINIATALSRS--GYNIAVVDTDPQMSLT 45 (206)
T ss_dssp EEEEECCSSTTSSHHHHHHHHHHHHHHT--TCCEEEEECCTTCHHH
T ss_pred eEEEEEeCCCCccHHHHHHHHHHHHHHC--CCeEEEEECCCCCCHH
Confidence 577777 789999999999999887643 3357777776554443
No 308
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=93.62 E-value=0.032 Score=51.29 Aligned_cols=25 Identities=24% Similarity=0.376 Sum_probs=21.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhh
Q 010355 170 VHMIGAYGMAGVGKTMLVKEVARQA 194 (512)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~v~~~~ 194 (512)
-.+++|+|+.|+|||||.+.++...
T Consensus 32 Ge~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 32 GQIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3689999999999999999987654
No 309
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=93.61 E-value=0.038 Score=51.71 Aligned_cols=24 Identities=25% Similarity=0.326 Sum_probs=21.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHh
Q 010355 170 VHMIGAYGMAGVGKTMLVKEVARQ 193 (512)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~v~~~ 193 (512)
-.+++|+|+.|+|||||++.++..
T Consensus 46 Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 46 GEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999875
No 310
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=93.60 E-value=0.044 Score=52.19 Aligned_cols=27 Identities=22% Similarity=0.375 Sum_probs=23.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHhh
Q 010355 168 PDVHMIGAYGMAGVGKTMLVKEVARQA 194 (512)
Q Consensus 168 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 194 (512)
..-.+++|+|+.|+|||||++.+....
T Consensus 124 ~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 124 PKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp TTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 344789999999999999999998765
No 311
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=93.57 E-value=0.033 Score=52.09 Aligned_cols=25 Identities=24% Similarity=0.388 Sum_probs=22.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhh
Q 010355 170 VHMIGAYGMAGVGKTMLVKEVARQA 194 (512)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~v~~~~ 194 (512)
-.+++|+|+.|+|||||++.++.-.
T Consensus 37 Ge~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 37 GEMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp TCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCC
Confidence 4689999999999999999987654
No 312
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=93.57 E-value=0.033 Score=51.80 Aligned_cols=25 Identities=20% Similarity=0.232 Sum_probs=21.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhh
Q 010355 170 VHMIGAYGMAGVGKTMLVKEVARQA 194 (512)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~v~~~~ 194 (512)
-.+++|+|+.|+|||||.+.++...
T Consensus 33 Ge~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 33 GDVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3689999999999999999987654
No 313
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=93.55 E-value=0.035 Score=51.14 Aligned_cols=26 Identities=23% Similarity=0.266 Sum_probs=22.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhh
Q 010355 169 DVHMIGAYGMAGVGKTMLVKEVARQA 194 (512)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 194 (512)
.-.+++|+|+.|+|||||++.++...
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34689999999999999999987654
No 314
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=93.55 E-value=0.034 Score=50.76 Aligned_cols=26 Identities=23% Similarity=0.396 Sum_probs=22.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhhh
Q 010355 170 VHMIGAYGMAGVGKTMLVKEVARQAK 195 (512)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 195 (512)
-.+++|+|+.|+|||||.+.++....
T Consensus 34 Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 59 (229)
T 2pze_A 34 GQLLAVAGSTGAGKTSLLMMIMGELE 59 (229)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCc
Confidence 36899999999999999999987643
No 315
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=93.51 E-value=0.034 Score=51.87 Aligned_cols=26 Identities=15% Similarity=0.301 Sum_probs=22.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhh
Q 010355 169 DVHMIGAYGMAGVGKTMLVKEVARQA 194 (512)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 194 (512)
.-.+++|+|+.|+|||||++.++...
T Consensus 49 ~Gei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHcCC
Confidence 34689999999999999999987654
No 316
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=93.51 E-value=0.035 Score=51.32 Aligned_cols=25 Identities=36% Similarity=0.493 Sum_probs=21.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhh
Q 010355 170 VHMIGAYGMAGVGKTMLVKEVARQA 194 (512)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~v~~~~ 194 (512)
-.+++|+|+.|+|||||++.++...
T Consensus 35 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 35 GEVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3689999999999999999987654
No 317
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=93.50 E-value=0.029 Score=50.59 Aligned_cols=24 Identities=29% Similarity=0.516 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhh
Q 010355 171 HMIGAYGMAGVGKTMLVKEVARQA 194 (512)
Q Consensus 171 ~vi~I~G~gGiGKTtLa~~v~~~~ 194 (512)
.+++|+|+.|+|||||++.++...
T Consensus 36 e~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp CCEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 578999999999999999987654
No 318
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=93.49 E-value=0.079 Score=52.12 Aligned_cols=27 Identities=22% Similarity=0.175 Sum_probs=23.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHhh
Q 010355 168 PDVHMIGAYGMAGVGKTMLVKEVARQA 194 (512)
Q Consensus 168 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 194 (512)
....+++|+|++|+|||||++.++...
T Consensus 167 ~~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 167 PKKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 445799999999999999999998754
No 319
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=93.45 E-value=0.042 Score=46.44 Aligned_cols=23 Identities=26% Similarity=0.437 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhh
Q 010355 172 MIGAYGMAGVGKTMLVKEVARQA 194 (512)
Q Consensus 172 vi~I~G~gGiGKTtLa~~v~~~~ 194 (512)
-|+|+|.+|+|||||+..+....
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 47899999999999999998653
No 320
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=93.45 E-value=0.044 Score=46.53 Aligned_cols=24 Identities=17% Similarity=0.299 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhh
Q 010355 171 HMIGAYGMAGVGKTMLVKEVARQA 194 (512)
Q Consensus 171 ~vi~I~G~gGiGKTtLa~~v~~~~ 194 (512)
--|+|+|.+|+|||||+..+....
T Consensus 6 ~~i~v~G~~~~GKssl~~~l~~~~ 29 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMIQRYCKGI 29 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEEECcCCCCHHHHHHHHHcCC
Confidence 457899999999999999998753
No 321
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=93.41 E-value=0.046 Score=53.89 Aligned_cols=25 Identities=32% Similarity=0.469 Sum_probs=22.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhhh
Q 010355 171 HMIGAYGMAGVGKTMLVKEVARQAK 195 (512)
Q Consensus 171 ~vi~I~G~gGiGKTtLa~~v~~~~~ 195 (512)
++|+|.|+.|+||||||..++....
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~~ 27 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKFN 27 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHHT
T ss_pred cEEEEECcchhhHHHHHHHHHHHCC
Confidence 6899999999999999999998754
No 322
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=93.40 E-value=0.12 Score=55.09 Aligned_cols=63 Identities=25% Similarity=0.206 Sum_probs=40.7
Q ss_pred HHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCCCHHHHHHHHHH
Q 010355 156 STLNDVINALKNPDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIAD 223 (512)
Q Consensus 156 ~~l~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~i~~ 223 (512)
...+.+...|... .+..|+||+|+|||+.+.++....-.. ...+.++...+..+..++..+..
T Consensus 193 ~Q~~AV~~al~~~--~~~lI~GPPGTGKT~ti~~~I~~l~~~---~~~ILv~a~TN~AvD~i~erL~~ 255 (646)
T 4b3f_X 193 SQKEAVLFALSQK--ELAIIHGPPGTGKTTTVVEIILQAVKQ---GLKVLCCAPSNIAVDNLVERLAL 255 (646)
T ss_dssp HHHHHHHHHHHCS--SEEEEECCTTSCHHHHHHHHHHHHHHT---TCCEEEEESSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCC--CceEEECCCCCCHHHHHHHHHHHHHhC---CCeEEEEcCchHHHHHHHHHHHh
Confidence 3455566666533 477899999999997665555443322 23567777777667777766643
No 323
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=93.39 E-value=0.037 Score=51.43 Aligned_cols=25 Identities=24% Similarity=0.397 Sum_probs=22.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhh
Q 010355 170 VHMIGAYGMAGVGKTMLVKEVARQA 194 (512)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~v~~~~ 194 (512)
-.+++|+|+.|+|||||.+.++...
T Consensus 41 Gei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 41 GEIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCC
Confidence 4689999999999999999987654
No 324
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=93.38 E-value=0.072 Score=46.41 Aligned_cols=34 Identities=21% Similarity=0.307 Sum_probs=25.8
Q ss_pred HHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHh
Q 010355 159 NDVINALKNPDVHMIGAYGMAGVGKTMLVKEVARQ 193 (512)
Q Consensus 159 ~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 193 (512)
..+.. +......-|+|+|.+|+|||||...+...
T Consensus 6 ~~~~~-~~~~~~~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 6 TRIWR-LFNHQEHKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp HHHHH-HHTTSCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred HHHHH-hcCCCccEEEEECCCCCCHHHHHHHHhcC
Confidence 34555 33445577899999999999999998853
No 325
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=93.36 E-value=0.038 Score=51.52 Aligned_cols=25 Identities=24% Similarity=0.240 Sum_probs=22.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhh
Q 010355 170 VHMIGAYGMAGVGKTMLVKEVARQA 194 (512)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~v~~~~ 194 (512)
-.+++|+|+.|+|||||++.++...
T Consensus 46 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 46 GTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhccC
Confidence 3689999999999999999987654
No 326
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=93.33 E-value=0.038 Score=51.82 Aligned_cols=26 Identities=15% Similarity=0.166 Sum_probs=22.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhh
Q 010355 169 DVHMIGAYGMAGVGKTMLVKEVARQA 194 (512)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 194 (512)
.-.+++|+|+.|+|||||++.++...
T Consensus 44 ~Ge~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 44 PGKVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34689999999999999999987654
No 327
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=93.30 E-value=0.13 Score=49.76 Aligned_cols=44 Identities=23% Similarity=0.164 Sum_probs=32.2
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCC
Q 010355 167 NPDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRP 212 (512)
Q Consensus 167 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~ 212 (512)
....+++.+.|.||+||||+|..++...... -..+.-++.....
T Consensus 16 ~~~~~i~v~sgkGGvGKTTva~~LA~~lA~~--G~rVllvD~D~~~ 59 (329)
T 2woo_A 16 QTSLKWIFVGGKGGVGKTTTSCSLAIQMSKV--RSSVLLISTDPAH 59 (329)
T ss_dssp CTTCCEEEEECSSSSSHHHHHHHHHHHHHTS--SSCEEEEECCTTC
T ss_pred CCCCEEEEEeCCCCCcHHHHHHHHHHHHHHC--CCeEEEEECCCCc
Confidence 3445778889999999999999999887643 3356666665443
No 328
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=93.29 E-value=0.054 Score=47.15 Aligned_cols=24 Identities=21% Similarity=0.326 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHh
Q 010355 170 VHMIGAYGMAGVGKTMLVKEVARQ 193 (512)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~v~~~ 193 (512)
...|+|+|.+|+|||||+..+...
T Consensus 7 ~~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 7 SYEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 357899999999999999999864
No 329
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=93.28 E-value=0.022 Score=59.87 Aligned_cols=23 Identities=26% Similarity=0.342 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhh
Q 010355 172 MIGAYGMAGVGKTMLVKEVARQA 194 (512)
Q Consensus 172 vi~I~G~gGiGKTtLa~~v~~~~ 194 (512)
.|.|+|++|+|||+||+.+++..
T Consensus 329 ~vLL~GppGtGKT~LAr~la~~~ 351 (595)
T 3f9v_A 329 HILIIGDPGTAKSQMLQFISRVA 351 (595)
T ss_dssp CEEEEESSCCTHHHHHHSSSTTC
T ss_pred ceEEECCCchHHHHHHHHHHHhC
Confidence 58899999999999999987665
No 330
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=93.27 E-value=0.04 Score=50.98 Aligned_cols=25 Identities=24% Similarity=0.380 Sum_probs=21.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhh
Q 010355 170 VHMIGAYGMAGVGKTMLVKEVARQA 194 (512)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~v~~~~ 194 (512)
-.+++|+|+.|+|||||.+.++...
T Consensus 26 Ge~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 26 GEILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Confidence 3689999999999999999987654
No 331
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.22 E-value=0.049 Score=47.18 Aligned_cols=33 Identities=21% Similarity=0.287 Sum_probs=24.6
Q ss_pred HHHHHhcC-CCceEEEEEcCCCCcHHHHHHHHHH
Q 010355 160 DVINALKN-PDVHMIGAYGMAGVGKTMLVKEVAR 192 (512)
Q Consensus 160 ~l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~ 192 (512)
++...+.. ....-|+|+|.+|+|||||...+..
T Consensus 7 ~~~~~~~~~~~~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 7 SMFDKLWGSNKELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp HHHGGGTTCSSCEEEEEEEETTSSHHHHHHHTCC
T ss_pred HHHHHhcCCCCccEEEEECCCCCCHHHHHHHHhc
Confidence 34443444 4567789999999999999988763
No 332
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.20 E-value=0.06 Score=48.29 Aligned_cols=26 Identities=23% Similarity=0.147 Sum_probs=22.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhh
Q 010355 169 DVHMIGAYGMAGVGKTMLVKEVARQA 194 (512)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 194 (512)
....|+|+|.+|+|||||+..+....
T Consensus 11 ~~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 11 YQPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45678999999999999999998754
No 333
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=93.18 E-value=0.042 Score=51.42 Aligned_cols=25 Identities=28% Similarity=0.279 Sum_probs=21.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhh
Q 010355 170 VHMIGAYGMAGVGKTMLVKEVARQA 194 (512)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~v~~~~ 194 (512)
-.+++|+|+.|+|||||++.++...
T Consensus 33 Ge~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 33 GECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Confidence 3689999999999999999987654
No 334
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=93.18 E-value=0.042 Score=50.99 Aligned_cols=25 Identities=20% Similarity=0.348 Sum_probs=22.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhh
Q 010355 170 VHMIGAYGMAGVGKTMLVKEVARQA 194 (512)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~v~~~~ 194 (512)
-.+++|+|+.|+|||||.+.++...
T Consensus 31 Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 31 GDILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp TCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3689999999999999999988654
No 335
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=93.16 E-value=0.07 Score=46.34 Aligned_cols=26 Identities=31% Similarity=0.395 Sum_probs=22.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHh
Q 010355 168 PDVHMIGAYGMAGVGKTMLVKEVARQ 193 (512)
Q Consensus 168 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 193 (512)
....-|+|+|.+|+|||||...+...
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcC
Confidence 34567899999999999999998754
No 336
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=93.16 E-value=0.042 Score=51.79 Aligned_cols=25 Identities=28% Similarity=0.356 Sum_probs=21.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhh
Q 010355 170 VHMIGAYGMAGVGKTMLVKEVARQA 194 (512)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~v~~~~ 194 (512)
-.+++|+|+.|+|||||++.++...
T Consensus 47 Ge~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 47 GDKWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Confidence 3689999999999999999987654
No 337
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=93.15 E-value=0.052 Score=47.44 Aligned_cols=24 Identities=25% Similarity=0.389 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhh
Q 010355 171 HMIGAYGMAGVGKTMLVKEVARQA 194 (512)
Q Consensus 171 ~vi~I~G~gGiGKTtLa~~v~~~~ 194 (512)
--|+|+|.+|+|||||+..+....
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSS
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 467899999999999999998753
No 338
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=93.13 E-value=0.41 Score=48.30 Aligned_cols=87 Identities=18% Similarity=0.224 Sum_probs=51.7
Q ss_pred ceEEEEEcCCCCcHHHHH-HHHHHhhhhcCCCCeEEEEEeCCCC-CHHHHHHHHHHHhCCCC-------CCCCchH----
Q 010355 170 VHMIGAYGMAGVGKTMLV-KEVARQAKADKLFDEVVYAEVSQRP-DVKKIQGQIADKLGLKF-------YEESESG---- 236 (512)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa-~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~ll~~i~~~l~~~~-------~~~~~~~---- 236 (512)
-.-++|.|..|+|||+|+ ..++++.. .-..++++-+++.. ...+++..+...-.+.. ...+...
T Consensus 162 GQR~~Ifg~~g~GKT~l~l~~I~n~~~---~dv~~V~~~IGeR~~ev~e~~~~l~~~g~m~~tvvV~atad~p~~~r~~a 238 (513)
T 3oaa_A 162 GQRELIIGDRQTGKTALAIDAIINQRD---SGIKCIYVAIGQKASTISNVVRKLEEHGALANTIVVVATASESAALQYLA 238 (513)
T ss_dssp TCBCEEEESSSSSHHHHHHHHHHTTSS---SSCEEEEEEESCCHHHHHHHHHHHHHHSCSTTEEEEEECTTSCHHHHHHH
T ss_pred CCEEEeecCCCCCcchHHHHHHHhhcc---CCceEEEEEecCChHHHHHHHHHHhhcCcccceEEEEECCCCChHHHHHH
Confidence 356789999999999996 45555421 22246788888765 45566666544322211 0111111
Q ss_pred --HHHHHHHHHh-CCCeEEEEEeCCC
Q 010355 237 --RARKLCERLK-KEKKILVILDDIW 259 (512)
Q Consensus 237 --~~~~l~~~l~-~~k~~LlVlDdv~ 259 (512)
....+.++++ +++..||++||+.
T Consensus 239 ~~~a~tiAEyfrd~G~dVLli~Dslt 264 (513)
T 3oaa_A 239 PYAGCAMGEYFRDRGEDALIIYDDLS 264 (513)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEETHH
T ss_pred HHHHHHHHHHHHhcCCCEEEEecChH
Confidence 1223444554 5799999999984
No 339
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=93.13 E-value=0.054 Score=45.91 Aligned_cols=24 Identities=29% Similarity=0.415 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhh
Q 010355 171 HMIGAYGMAGVGKTMLVKEVARQA 194 (512)
Q Consensus 171 ~vi~I~G~gGiGKTtLa~~v~~~~ 194 (512)
.-|+|+|.+|+|||||+..+....
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~~ 28 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYDE 28 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHHhCc
Confidence 458899999999999999998753
No 340
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=93.12 E-value=0.05 Score=46.63 Aligned_cols=24 Identities=33% Similarity=0.358 Sum_probs=20.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHh
Q 010355 170 VHMIGAYGMAGVGKTMLVKEVARQ 193 (512)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~v~~~ 193 (512)
..-|+|+|.+|+|||||+..+...
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEEEECCCCccHHHHHHHHhcC
Confidence 346889999999999999998754
No 341
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=93.11 E-value=0.1 Score=50.88 Aligned_cols=27 Identities=19% Similarity=0.342 Sum_probs=23.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhh
Q 010355 169 DVHMIGAYGMAGVGKTMLVKEVARQAK 195 (512)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 195 (512)
...+|+|+|.+|+|||||...+.....
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~~~ 99 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKMLT 99 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhh
Confidence 468999999999999999999987654
No 342
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=93.08 E-value=0.054 Score=50.72 Aligned_cols=24 Identities=29% Similarity=0.441 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhh
Q 010355 172 MIGAYGMAGVGKTMLVKEVARQAK 195 (512)
Q Consensus 172 vi~I~G~gGiGKTtLa~~v~~~~~ 195 (512)
.++|+|+.|+|||||.+.++....
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~ 27 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQV 27 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 578999999999999999987653
No 343
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=93.06 E-value=0.15 Score=45.62 Aligned_cols=43 Identities=16% Similarity=0.093 Sum_probs=31.7
Q ss_pred EEEE-EcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCCCHHHH
Q 010355 172 MIGA-YGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKI 217 (512)
Q Consensus 172 vi~I-~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~l 217 (512)
+|+| .+.||+||||+|..++...... - .++-++.....+....
T Consensus 2 vI~v~s~KGGvGKTT~a~~LA~~la~~--g-~VlliD~D~q~~~~~~ 45 (209)
T 3cwq_A 2 IITVASFKGGVGKTTTAVHLSAYLALQ--G-ETLLIDGDPNRSATGW 45 (209)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHTT--S-CEEEEEECTTCHHHHH
T ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHhc--C-CEEEEECCCCCCHHHH
Confidence 4555 5889999999999999888743 3 6778888766544433
No 344
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=93.06 E-value=0.055 Score=45.77 Aligned_cols=24 Identities=25% Similarity=0.365 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhh
Q 010355 171 HMIGAYGMAGVGKTMLVKEVARQA 194 (512)
Q Consensus 171 ~vi~I~G~gGiGKTtLa~~v~~~~ 194 (512)
--|+|+|.+|+|||||+..+....
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~~ 27 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHHcCC
Confidence 358899999999999999988653
No 345
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=93.04 E-value=0.059 Score=45.63 Aligned_cols=22 Identities=23% Similarity=0.321 Sum_probs=19.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHhh
Q 010355 173 IGAYGMAGVGKTMLVKEVARQA 194 (512)
Q Consensus 173 i~I~G~gGiGKTtLa~~v~~~~ 194 (512)
|+|+|.+|+|||||+..+....
T Consensus 3 i~~~G~~~~GKssl~~~l~~~~ 24 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLGE 24 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHcCC
Confidence 7899999999999999997653
No 346
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=93.03 E-value=0.056 Score=45.81 Aligned_cols=22 Identities=27% Similarity=0.444 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHh
Q 010355 172 MIGAYGMAGVGKTMLVKEVARQ 193 (512)
Q Consensus 172 vi~I~G~gGiGKTtLa~~v~~~ 193 (512)
-|+|+|.+|+|||||+..+...
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5789999999999999999875
No 347
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=93.01 E-value=0.056 Score=46.02 Aligned_cols=24 Identities=29% Similarity=0.284 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhh
Q 010355 171 HMIGAYGMAGVGKTMLVKEVARQA 194 (512)
Q Consensus 171 ~vi~I~G~gGiGKTtLa~~v~~~~ 194 (512)
--|+|+|.+|+|||||+..+....
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~~ 30 (170)
T 1z08_A 7 FKVVLLGEGCVGKTSLVLRYCENK 30 (170)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHCC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 468899999999999999998653
No 348
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=92.99 E-value=0.069 Score=45.89 Aligned_cols=25 Identities=20% Similarity=0.324 Sum_probs=21.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHh
Q 010355 169 DVHMIGAYGMAGVGKTMLVKEVARQ 193 (512)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~v~~~ 193 (512)
+...|+|+|.+|+|||||+..+...
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4567899999999999999998764
No 349
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=92.98 E-value=0.039 Score=55.46 Aligned_cols=27 Identities=30% Similarity=0.395 Sum_probs=23.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhhhh
Q 010355 170 VHMIGAYGMAGVGKTMLVKEVARQAKA 196 (512)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~v~~~~~~ 196 (512)
.++|+|+|.+|+||||++..++.....
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~ 125 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQK 125 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 468999999999999999999887653
No 350
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=92.97 E-value=0.046 Score=52.63 Aligned_cols=26 Identities=23% Similarity=0.425 Sum_probs=23.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhh
Q 010355 169 DVHMIGAYGMAGVGKTMLVKEVARQA 194 (512)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 194 (512)
..++++|+|+.|+|||||.+.+....
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHSC
T ss_pred cccEEEEEecCCCCHHHHHHHHHhhc
Confidence 46899999999999999999998754
No 351
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=92.96 E-value=0.058 Score=45.82 Aligned_cols=23 Identities=26% Similarity=0.329 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhh
Q 010355 172 MIGAYGMAGVGKTMLVKEVARQA 194 (512)
Q Consensus 172 vi~I~G~gGiGKTtLa~~v~~~~ 194 (512)
-|+|+|.+|+|||||+..+....
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998654
No 352
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=92.94 E-value=0.083 Score=54.73 Aligned_cols=27 Identities=22% Similarity=0.345 Sum_probs=24.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhh
Q 010355 169 DVHMIGAYGMAGVGKTMLVKEVARQAK 195 (512)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 195 (512)
...+++|+|+.|+|||||++.++....
T Consensus 368 ~G~iI~LiG~sGSGKSTLar~La~~L~ 394 (552)
T 3cr8_A 368 QGFTVFFTGLSGAGKSTLARALAARLM 394 (552)
T ss_dssp SCEEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred cceEEEEECCCCChHHHHHHHHHHhhc
Confidence 347899999999999999999998875
No 353
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=92.92 E-value=0.058 Score=47.08 Aligned_cols=25 Identities=24% Similarity=0.286 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhh
Q 010355 170 VHMIGAYGMAGVGKTMLVKEVARQA 194 (512)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~v~~~~ 194 (512)
.--|+|+|.+|+|||||+..+....
T Consensus 20 ~~ki~ivG~~~vGKSsL~~~~~~~~ 44 (184)
T 3ihw_A 20 ELKVGIVGNLSSGKSALVHRYLTGT 44 (184)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHSS
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCC
Confidence 3568899999999999999887653
No 354
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=92.89 E-value=0.14 Score=49.23 Aligned_cols=45 Identities=16% Similarity=0.132 Sum_probs=32.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCCCHHH
Q 010355 170 VHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKK 216 (512)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 216 (512)
..++.+.|.||+||||+|..++...... -..++-|+.....++..
T Consensus 14 ~~i~v~sgKGGvGKTTvA~~LA~~lA~~--G~rVLlvD~D~~~~l~~ 58 (324)
T 3zq6_A 14 TTFVFIGGKGGVGKTTISAATALWMARS--GKKTLVISTDPAHSLSD 58 (324)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHHHT--TCCEEEEECCSSCCHHH
T ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHHC--CCcEEEEeCCCCcCHHH
Confidence 4677788999999999999998887643 33566677665555443
No 355
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=92.89 E-value=0.057 Score=45.98 Aligned_cols=22 Identities=27% Similarity=0.376 Sum_probs=19.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHH
Q 010355 171 HMIGAYGMAGVGKTMLVKEVAR 192 (512)
Q Consensus 171 ~vi~I~G~gGiGKTtLa~~v~~ 192 (512)
--|+|+|.+|+|||||+..+..
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHHh
Confidence 3578999999999999999863
No 356
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*
Probab=92.89 E-value=0.17 Score=49.31 Aligned_cols=48 Identities=19% Similarity=0.159 Sum_probs=33.2
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHHHhhh--hcCCCCeEEEEEeCCCCCHHH
Q 010355 167 NPDVHMIGAYGMAGVGKTMLVKEVARQAK--ADKLFDEVVYAEVSQRPDVKK 216 (512)
Q Consensus 167 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~~--~~~~f~~~~wv~~~~~~~~~~ 216 (512)
.....++.+.|.||+||||+|..++.... .. -..++-|+.....++..
T Consensus 15 ~~~~~i~v~sgKGGvGKTTvaanLA~~lA~~~~--G~rVLLvD~D~~~~l~~ 64 (354)
T 2woj_A 15 STTHKWIFVGGKGGVGKTTSSCSIAIQMALSQP--NKQFLLISTDPAHNLSD 64 (354)
T ss_dssp CSSCCEEEEEESTTSSHHHHHHHHHHHHHHHCT--TSCEEEEECCSSCCHHH
T ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHHHHhcC--CCeEEEEECCCCCCHHH
Confidence 34456777889999999999999988776 32 23466666655444443
No 357
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=92.87 E-value=0.061 Score=45.77 Aligned_cols=24 Identities=21% Similarity=0.343 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhh
Q 010355 171 HMIGAYGMAGVGKTMLVKEVARQA 194 (512)
Q Consensus 171 ~vi~I~G~gGiGKTtLa~~v~~~~ 194 (512)
--|+|+|.+|+|||||+..+....
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 357899999999999999998754
No 358
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=92.86 E-value=0.061 Score=46.81 Aligned_cols=24 Identities=17% Similarity=0.203 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhh
Q 010355 171 HMIGAYGMAGVGKTMLVKEVARQA 194 (512)
Q Consensus 171 ~vi~I~G~gGiGKTtLa~~v~~~~ 194 (512)
.+.+|+|+.|+|||||+..++.-.
T Consensus 27 g~~~i~G~NGsGKStll~ai~~~l 50 (182)
T 3kta_A 27 GFTAIVGANGSGKSNIGDAILFVL 50 (182)
T ss_dssp SEEEEEECTTSSHHHHHHHHHHHT
T ss_pred CcEEEECCCCCCHHHHHHHHHHHH
Confidence 488999999999999999987754
No 359
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=92.85 E-value=0.057 Score=46.98 Aligned_cols=25 Identities=28% Similarity=0.291 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhh
Q 010355 170 VHMIGAYGMAGVGKTMLVKEVARQA 194 (512)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~v~~~~ 194 (512)
.--|+|+|.+|+|||||+..+....
T Consensus 7 ~~ki~v~G~~~vGKSsli~~l~~~~ 31 (184)
T 1m7b_A 7 KCKIVVVGDSQCGKTALLHVFAKDC 31 (184)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEEEECCCCCCHHHHHHHHhcCC
Confidence 3457899999999999999998753
No 360
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=92.81 E-value=0.062 Score=46.31 Aligned_cols=26 Identities=27% Similarity=0.409 Sum_probs=22.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhh
Q 010355 169 DVHMIGAYGMAGVGKTMLVKEVARQA 194 (512)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 194 (512)
...-|+|+|.+|+|||||+..+....
T Consensus 7 ~~~~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 7 NILKVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCc
Confidence 34568999999999999999988753
No 361
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=92.80 E-value=0.11 Score=51.06 Aligned_cols=44 Identities=16% Similarity=0.144 Sum_probs=32.7
Q ss_pred CCceEEEEEc-CCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCCC
Q 010355 168 PDVHMIGAYG-MAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPD 213 (512)
Q Consensus 168 ~~~~vi~I~G-~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~ 213 (512)
.+.++|+|+| .||+||||+|..++...... -..++.+++....+
T Consensus 141 ~~~kvIav~s~KGGvGKTT~a~nLA~~La~~--g~rVlliD~D~~~~ 185 (373)
T 3fkq_A 141 DKSSVVIFTSPCGGVGTSTVAAACAIAHANM--GKKVFYLNIEQCGT 185 (373)
T ss_dssp TSCEEEEEECSSTTSSHHHHHHHHHHHHHHH--TCCEEEEECCTTCC
T ss_pred CCceEEEEECCCCCChHHHHHHHHHHHHHhC--CCCEEEEECCCCCC
Confidence 3568888885 99999999999998877643 34577788764333
No 362
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=92.80 E-value=0.063 Score=46.13 Aligned_cols=25 Identities=24% Similarity=0.369 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhh
Q 010355 170 VHMIGAYGMAGVGKTMLVKEVARQA 194 (512)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~v~~~~ 194 (512)
..-|+|+|.+|+|||||+..+....
T Consensus 7 ~~~i~v~G~~~~GKSsli~~l~~~~ 31 (177)
T 1wms_A 7 LFKVILLGDGGVGKSSLMNRYVTNK 31 (177)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCC
Confidence 3468899999999999999998653
No 363
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=92.75 E-value=0.073 Score=54.88 Aligned_cols=27 Identities=26% Similarity=0.377 Sum_probs=23.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhh
Q 010355 169 DVHMIGAYGMAGVGKTMLVKEVARQAK 195 (512)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 195 (512)
...+|.++|++|+||||+|+.++....
T Consensus 34 ~~~lIvlvGlpGSGKSTia~~La~~L~ 60 (520)
T 2axn_A 34 SPTVIVMVGLPARGKTYISKKLTRYLN 60 (520)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 457899999999999999999988765
No 364
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=92.75 E-value=0.057 Score=46.54 Aligned_cols=23 Identities=22% Similarity=0.306 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHh
Q 010355 171 HMIGAYGMAGVGKTMLVKEVARQ 193 (512)
Q Consensus 171 ~vi~I~G~gGiGKTtLa~~v~~~ 193 (512)
..|+|+|.+|+|||||...+...
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46889999999999999999864
No 365
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=92.74 E-value=0.15 Score=51.59 Aligned_cols=95 Identities=20% Similarity=0.227 Sum_probs=56.0
Q ss_pred HHHHhc-CCCceEEEEEcCCCCcHHHHHH-HHHHhhhhcCCCC-eEEEEEeCCCC-CHHHHHHHHHHHhCCCC-------
Q 010355 161 VINALK-NPDVHMIGAYGMAGVGKTMLVK-EVARQAKADKLFD-EVVYAEVSQRP-DVKKIQGQIADKLGLKF------- 229 (512)
Q Consensus 161 l~~~L~-~~~~~vi~I~G~gGiGKTtLa~-~v~~~~~~~~~f~-~~~wv~~~~~~-~~~~ll~~i~~~l~~~~------- 229 (512)
.++.|. -..-.-++|.|.+|+|||+||. .+++... .+ .++++-+++.. ...++++.+...-....
T Consensus 152 aID~l~PigrGQR~~Ifg~~g~GKT~Lal~~I~~~~~----~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~~tvvV~at 227 (502)
T 2qe7_A 152 AIDSMIPIGRGQRELIIGDRQTGKTTIAIDTIINQKG----QDVICIYVAIGQKQSTVAGVVETLRQHDALDYTIVVTAS 227 (502)
T ss_dssp HHHHSSCCBTTCBCEEEECSSSCHHHHHHHHHHGGGS----CSEEEEEEEESCCHHHHHHHHHHHHHTTCSTTEEEEEEC
T ss_pred ecccccccccCCEEEEECCCCCCchHHHHHHHHHhhc----CCcEEEEEECCCcchHHHHHHHHHhhCCCcceeEEEEEC
Confidence 344444 2233567899999999999964 6666542 34 35777777665 45566666654322211
Q ss_pred CCCCchH------HHHHHHHHHh-CCCeEEEEEeCCC
Q 010355 230 YEESESG------RARKLCERLK-KEKKILVILDDIW 259 (512)
Q Consensus 230 ~~~~~~~------~~~~l~~~l~-~~k~~LlVlDdv~ 259 (512)
...+... ....+.+++. +++.+||++||+.
T Consensus 228 ad~p~~~r~~a~~~a~tiAEyfrd~G~dVLl~~Dslt 264 (502)
T 2qe7_A 228 ASEPAPLLYLAPYAGCAMGEYFMYKGKHALVVYDDLS 264 (502)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEEecHH
Confidence 1111111 1234455554 4799999999984
No 366
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=92.73 E-value=0.15 Score=49.71 Aligned_cols=41 Identities=22% Similarity=0.142 Sum_probs=29.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCC
Q 010355 168 PDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQ 210 (512)
Q Consensus 168 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~ 210 (512)
....++.+.|.||+||||+|..++...... -..++-|+...
T Consensus 24 ~~~~i~v~sgKGGvGKTTvA~~LA~~lA~~--G~rVLlvD~D~ 64 (349)
T 3ug7_A 24 DGTKYIMFGGKGGVGKTTMSAATGVYLAEK--GLKVVIVSTDP 64 (349)
T ss_dssp CSCEEEEEECSSSTTHHHHHHHHHHHHHHS--SCCEEEEECCT
T ss_pred CCCEEEEEeCCCCccHHHHHHHHHHHHHHC--CCeEEEEeCCC
Confidence 445677778999999999999998887643 23455666544
No 367
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=92.73 E-value=0.047 Score=49.80 Aligned_cols=25 Identities=20% Similarity=0.250 Sum_probs=21.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHh
Q 010355 169 DVHMIGAYGMAGVGKTMLVKEVARQ 193 (512)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~v~~~ 193 (512)
...+|+|.|+.|+|||||++.++..
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhc
Confidence 3478999999999999999988765
No 368
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=92.73 E-value=0.061 Score=45.79 Aligned_cols=23 Identities=30% Similarity=0.563 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHh
Q 010355 171 HMIGAYGMAGVGKTMLVKEVARQ 193 (512)
Q Consensus 171 ~vi~I~G~gGiGKTtLa~~v~~~ 193 (512)
--|+|+|.+|+|||||+..+...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35789999999999999998864
No 369
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=92.70 E-value=0.067 Score=45.44 Aligned_cols=23 Identities=26% Similarity=0.348 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHh
Q 010355 171 HMIGAYGMAGVGKTMLVKEVARQ 193 (512)
Q Consensus 171 ~vi~I~G~gGiGKTtLa~~v~~~ 193 (512)
--|+|+|.+|+|||||+..+...
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 45789999999999999999864
No 370
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=92.69 E-value=0.054 Score=50.53 Aligned_cols=25 Identities=24% Similarity=0.316 Sum_probs=21.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhh
Q 010355 170 VHMIGAYGMAGVGKTMLVKEVARQA 194 (512)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~v~~~~ 194 (512)
-.+++|+|+.|+|||||.+.++...
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEEECCCCCCHHHHHHHHhCCC
Confidence 3689999999999999999987653
No 371
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=92.69 E-value=0.32 Score=44.37 Aligned_cols=39 Identities=15% Similarity=-0.032 Sum_probs=26.8
Q ss_pred cchHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHhh
Q 010355 153 SRMSTLNDVINALKNPDVHMIGAYGMAGVGKTMLVKEVARQA 194 (512)
Q Consensus 153 gR~~~l~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 194 (512)
-|.-....+..++... -+.|+|+.|.|||.+|..++...
T Consensus 94 l~~~Q~~ai~~~~~~~---~~ll~~~tG~GKT~~a~~~~~~~ 132 (237)
T 2fz4_A 94 LRDYQEKALERWLVDK---RGCIVLPTGSGKTHVAMAAINEL 132 (237)
T ss_dssp CCHHHHHHHHHHTTTS---EEEEEESSSTTHHHHHHHHHHHS
T ss_pred cCHHHHHHHHHHHhCC---CEEEEeCCCCCHHHHHHHHHHHc
Confidence 3444444444454432 37889999999999998887664
No 372
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=92.69 E-value=0.059 Score=52.54 Aligned_cols=25 Identities=28% Similarity=0.363 Sum_probs=22.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhh
Q 010355 170 VHMIGAYGMAGVGKTMLVKEVARQA 194 (512)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~v~~~~ 194 (512)
-.+++|.|+.|+|||||.+.++--.
T Consensus 30 Ge~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 30 GEILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCchHHHHHHHHhcCC
Confidence 3689999999999999999998754
No 373
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=92.68 E-value=0.091 Score=46.42 Aligned_cols=32 Identities=22% Similarity=0.285 Sum_probs=23.4
Q ss_pred HHHHhc-CCCceEEEEEcCCCCcHHHHHHHHHH
Q 010355 161 VINALK-NPDVHMIGAYGMAGVGKTMLVKEVAR 192 (512)
Q Consensus 161 l~~~L~-~~~~~vi~I~G~gGiGKTtLa~~v~~ 192 (512)
+++.+. .....-|+|+|.+|+|||||+..+..
T Consensus 15 ~l~~~~~~~~~~ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 15 VLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp HHHHHTCTTCCEEEEEEEETTSSHHHHHHHHSC
T ss_pred HHHHhhccCCCcEEEEECCCCCCHHHHHHHHhc
Confidence 344442 33345688999999999999998864
No 374
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=92.68 E-value=0.063 Score=45.65 Aligned_cols=23 Identities=30% Similarity=0.379 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHh
Q 010355 171 HMIGAYGMAGVGKTMLVKEVARQ 193 (512)
Q Consensus 171 ~vi~I~G~gGiGKTtLa~~v~~~ 193 (512)
--|+|+|.+|+|||||+..+...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 45789999999999999998864
No 375
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=92.68 E-value=0.056 Score=45.87 Aligned_cols=21 Identities=29% Similarity=0.423 Sum_probs=18.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHH
Q 010355 172 MIGAYGMAGVGKTMLVKEVAR 192 (512)
Q Consensus 172 vi~I~G~gGiGKTtLa~~v~~ 192 (512)
-|+|+|.+|+|||||+..+..
T Consensus 4 ki~~vG~~~~GKSsli~~l~~ 24 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGG 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHcC
Confidence 478999999999999998853
No 376
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=92.68 E-value=0.076 Score=45.65 Aligned_cols=24 Identities=21% Similarity=0.174 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHh
Q 010355 170 VHMIGAYGMAGVGKTMLVKEVARQ 193 (512)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~v~~~ 193 (512)
-+-|.|.|.+|+||||||..+..+
T Consensus 16 G~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 16 KMGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHHT
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHc
Confidence 357889999999999999999875
No 377
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=92.65 E-value=0.066 Score=46.79 Aligned_cols=25 Identities=20% Similarity=0.283 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhh
Q 010355 170 VHMIGAYGMAGVGKTMLVKEVARQA 194 (512)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~v~~~~ 194 (512)
.--|+|+|.+|+|||||+..+....
T Consensus 21 ~~ki~vvG~~~vGKTsLi~~l~~~~ 45 (187)
T 3c5c_A 21 EVNLAILGRRGAGKSALTVKFLTKR 45 (187)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSS
T ss_pred eEEEEEECCCCCcHHHHHHHHHhCC
Confidence 3568899999999999999988753
No 378
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=92.64 E-value=0.074 Score=47.38 Aligned_cols=25 Identities=20% Similarity=0.255 Sum_probs=23.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhhh
Q 010355 171 HMIGAYGMAGVGKTMLVKEVARQAK 195 (512)
Q Consensus 171 ~vi~I~G~gGiGKTtLa~~v~~~~~ 195 (512)
.+|+|.|+.|+||||+++.++....
T Consensus 7 ~iI~i~g~~GsGk~ti~~~la~~lg 31 (201)
T 3fdi_A 7 IIIAIGREFGSGGHLVAKKLAEHYN 31 (201)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHTT
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHhC
Confidence 6899999999999999999999876
No 379
>3gqb_A V-type ATP synthase alpha chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_A* 3a5d_A 3j0j_A* 1um2_C
Probab=92.62 E-value=0.15 Score=52.09 Aligned_cols=95 Identities=16% Similarity=0.217 Sum_probs=55.3
Q ss_pred HHHHhcC-CCceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCC-CHHHHHHHHHH----HhCCCC-----
Q 010355 161 VINALKN-PDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRP-DVKKIQGQIAD----KLGLKF----- 229 (512)
Q Consensus 161 l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~ll~~i~~----~l~~~~----- 229 (512)
+++.|.. .+-.-++|.|..|+|||+|+.++++... -+.++++-++... ...+++..+-+ .+|...
T Consensus 211 vID~l~PigrGqr~~Ifg~~g~GKT~l~~~ia~~~~----~~v~V~~~iGER~~Ev~e~~~~~~el~d~~~G~~~~~rtv 286 (578)
T 3gqb_A 211 ILDVLFPVAMGGTAAIPGPFGSGKSVTQQSLAKWSN----ADVVVYVGSGERGNEMTDVLVEFPELTDPKTGGPLMHRTV 286 (578)
T ss_dssp HHHTTSCEETTCEEEECCCTTSCHHHHHHHHHHHSS----CSEEEEEEEEECHHHHHHHHTTGGGCBCTTTSSBSGGGEE
T ss_pred hhhhcccccCCCEEeeeCCCCccHHHHHHHHHhccC----CCEEEEEEecccHHHHHHHHHHHHhhcccccccccccceE
Confidence 4444441 2336789999999999999999987743 3567788887653 33444433321 112110
Q ss_pred -----CCCCchH------HHHHHHHHHh-CCCeEEEEEeCCC
Q 010355 230 -----YEESESG------RARKLCERLK-KEKKILVILDDIW 259 (512)
Q Consensus 230 -----~~~~~~~------~~~~l~~~l~-~~k~~LlVlDdv~ 259 (512)
...+... ....+.++++ .++.+||++|++.
T Consensus 287 vv~~tsd~p~~~R~~~~~~altiAEyfrd~G~dVLl~~Ds~t 328 (578)
T 3gqb_A 287 LIANTSNMPVAAREASIYVGVTIAEYFRDQGFSVALMADSTS 328 (578)
T ss_dssp EEEEETTSCHHHHHHHHHHHHHHHHHHHHTTCEEEECCSCHH
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEecChH
Confidence 0011111 1223444443 4789999999984
No 380
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=92.61 E-value=0.24 Score=44.15 Aligned_cols=49 Identities=22% Similarity=0.251 Sum_probs=32.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCCCHHHHHHHHH
Q 010355 171 HMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIA 222 (512)
Q Consensus 171 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~i~ 222 (512)
..|+|-|.-|+||||+++.++..... .+. +++..-+........++.++
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~~L~~--~~~-v~~~~eP~~t~~g~~ir~~l 51 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYHRLVK--DYD-VIMTREPGGVPTGEEIRKIV 51 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHTT--TSC-EEEEESSTTCHHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHC--CCC-EEEeeCCCCChHHHHHHHHH
Confidence 46889999999999999999998752 233 33333333333444455544
No 381
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=92.61 E-value=0.15 Score=51.54 Aligned_cols=85 Identities=16% Similarity=0.205 Sum_probs=51.7
Q ss_pred eEEEEEcCCCCcHHHHHH-HHHHhhhhcCCCC-eEEEEEeCCCC-CHHHHHHHHHHHhCCC-------CCCCCchH----
Q 010355 171 HMIGAYGMAGVGKTMLVK-EVARQAKADKLFD-EVVYAEVSQRP-DVKKIQGQIADKLGLK-------FYEESESG---- 236 (512)
Q Consensus 171 ~vi~I~G~gGiGKTtLa~-~v~~~~~~~~~f~-~~~wv~~~~~~-~~~~ll~~i~~~l~~~-------~~~~~~~~---- 236 (512)
.-++|.|.+|+|||+||. .+++... .+ .++++-+++.. ...++++.+...-.+. ....+...
T Consensus 176 QR~~I~g~~g~GKT~Lal~~I~~~~~----~dv~~V~~~IGeR~~Ev~e~~~~~~~~g~m~rtvvV~atad~p~~~r~~a 251 (515)
T 2r9v_A 176 QRELIIGDRQTGKTAIAIDTIINQKG----QGVYCIYVAIGQKKSAIARIIDKLRQYGAMEYTTVVVASASDPASLQYIA 251 (515)
T ss_dssp CBEEEEEETTSSHHHHHHHHHHTTTT----TTEEEEEEEESCCHHHHHHHHHHHHHTTGGGGEEEEEECTTSCHHHHHHH
T ss_pred CEEEEEcCCCCCccHHHHHHHHHhhc----CCcEEEEEEcCCCcHHHHHHHHHHHhCCCcceeEEEEECCCCCHHHHHHH
Confidence 568899999999999964 6666542 44 35777777665 4556666665421111 11111111
Q ss_pred --HHHHHHHHHh-CCCeEEEEEeCCC
Q 010355 237 --RARKLCERLK-KEKKILVILDDIW 259 (512)
Q Consensus 237 --~~~~l~~~l~-~~k~~LlVlDdv~ 259 (512)
....+.+++. +++.+||++||+.
T Consensus 252 ~~~a~tiAEyfrd~G~dVLli~DslT 277 (515)
T 2r9v_A 252 PYAGCAMGEYFAYSGRDALVVYDDLS 277 (515)
T ss_dssp HHHHHHHHHHHHTTTCEEEEEEETHH
T ss_pred HHHHHHHHHHHHHcCCcEEEEeccHH
Confidence 1234455554 4799999999984
No 382
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=92.59 E-value=0.089 Score=51.76 Aligned_cols=108 Identities=15% Similarity=0.144 Sum_probs=56.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEE-EEEeCCCCCHHHHHHHHHHH--hCCCCCCCCchHHHHHHHHH
Q 010355 168 PDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVV-YAEVSQRPDVKKIQGQIADK--LGLKFYEESESGRARKLCER 244 (512)
Q Consensus 168 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~-wv~~~~~~~~~~ll~~i~~~--l~~~~~~~~~~~~~~~l~~~ 244 (512)
....+++|+|+.|+|||||++.++...... ..+.+ ++.-.-......- ..++.+ ++.. .......+...
T Consensus 134 ~~g~~i~ivG~~GsGKTTll~~l~~~~~~~--~~g~I~~~e~~~e~~~~~~-~~~v~Q~~~g~~-----~~~~~~~l~~~ 205 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTTIASMIDYINQT--KSYHIITIEDPIEYVFKHK-KSIVNQREVGED-----TKSFADALRAA 205 (372)
T ss_dssp SSSEEEEEECSSSSSHHHHHHHHHHHHHHH--SCCEEEEEESSCCSCCCCS-SSEEEEEEBTTT-----BSCSHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhcCcC--CCcEEEEecccHhhhhccC-ceEEEeeecCCC-----HHHHHHHHHHH
Confidence 345789999999999999999998866532 12333 3321110000000 000000 1111 11123355556
Q ss_pred HhCCCeEEEEEeCCCChhhhhh-hCCCCCCCCeEEEEEeCCcc
Q 010355 245 LKKEKKILVILDDIWTNLDLEN-VGIPFGVRGCRVLMTARSQD 286 (512)
Q Consensus 245 l~~~k~~LlVlDdv~~~~~~~~-l~~~~~~~gs~iivTtR~~~ 286 (512)
|.. .+-+|++|.+.+...+.. +... ..|..||.|+....
T Consensus 206 L~~-~pd~illdE~~d~e~~~~~l~~~--~~g~~vi~t~H~~~ 245 (372)
T 2ewv_A 206 LRE-DPDVIFVGEMRDLETVETALRAA--ETGHLVFGTLHTNT 245 (372)
T ss_dssp TTS-CCSEEEESCCCSHHHHHHHHHHH--TTTCEEEECCCCCS
T ss_pred hhh-CcCEEEECCCCCHHHHHHHHHHH--hcCCEEEEEECcch
Confidence 654 567889999976554433 2211 34556777777654
No 383
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=92.58 E-value=0.075 Score=46.55 Aligned_cols=25 Identities=20% Similarity=0.381 Sum_probs=21.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHh
Q 010355 169 DVHMIGAYGMAGVGKTMLVKEVARQ 193 (512)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~v~~~ 193 (512)
+...|+|+|.+|+|||||+..+...
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4577899999999999999998764
No 384
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=92.58 E-value=0.063 Score=48.29 Aligned_cols=25 Identities=32% Similarity=0.357 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhhh
Q 010355 171 HMIGAYGMAGVGKTMLVKEVARQAK 195 (512)
Q Consensus 171 ~vi~I~G~gGiGKTtLa~~v~~~~~ 195 (512)
.+|+|.|+.|+||||+++.+.....
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~~g 28 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASELS 28 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4789999999999999999987653
No 385
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=92.56 E-value=0.055 Score=46.64 Aligned_cols=23 Identities=26% Similarity=0.372 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHh
Q 010355 171 HMIGAYGMAGVGKTMLVKEVARQ 193 (512)
Q Consensus 171 ~vi~I~G~gGiGKTtLa~~v~~~ 193 (512)
--|+|+|.+|+|||||+..+...
T Consensus 8 ~ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 8 LRLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEEECCGGGCHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 45789999999999999999875
No 386
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=92.56 E-value=0.037 Score=51.61 Aligned_cols=26 Identities=19% Similarity=0.298 Sum_probs=22.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhh
Q 010355 169 DVHMIGAYGMAGVGKTMLVKEVARQA 194 (512)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 194 (512)
+...|+|.|..|+||||+++.++...
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQLC 48 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhc
Confidence 45789999999999999999987765
No 387
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=92.56 E-value=0.071 Score=45.41 Aligned_cols=24 Identities=25% Similarity=0.319 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHh
Q 010355 170 VHMIGAYGMAGVGKTMLVKEVARQ 193 (512)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~v~~~ 193 (512)
..-|+|+|.+|+|||||+..+...
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 356889999999999999999764
No 388
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=92.55 E-value=0.07 Score=46.95 Aligned_cols=22 Identities=32% Similarity=0.347 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHH
Q 010355 171 HMIGAYGMAGVGKTMLVKEVAR 192 (512)
Q Consensus 171 ~vi~I~G~gGiGKTtLa~~v~~ 192 (512)
--|+|+|.+|+|||||...+..
T Consensus 7 ~kv~lvG~~~vGKSsL~~~~~~ 28 (192)
T 2cjw_A 7 YRVVLIGEQGVGKSTLANIFAG 28 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhc
Confidence 4588999999999999999875
No 389
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=92.55 E-value=0.071 Score=45.77 Aligned_cols=25 Identities=24% Similarity=0.381 Sum_probs=21.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhh
Q 010355 170 VHMIGAYGMAGVGKTMLVKEVARQA 194 (512)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~v~~~~ 194 (512)
..-|+|+|.+|+|||||+..+....
T Consensus 15 ~~~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 15 IFKYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCC
Confidence 4568899999999999999998754
No 390
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=92.53 E-value=0.087 Score=45.30 Aligned_cols=25 Identities=28% Similarity=0.462 Sum_probs=21.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHh
Q 010355 169 DVHMIGAYGMAGVGKTMLVKEVARQ 193 (512)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~v~~~ 193 (512)
...-|+|+|.+|+|||||+..+...
T Consensus 8 ~~~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 8 ETHKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 3457899999999999999999876
No 391
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=92.52 E-value=0.18 Score=50.99 Aligned_cols=99 Identities=18% Similarity=0.241 Sum_probs=57.2
Q ss_pred HHHHhc-CCCceEEEEEcCCCCcHHHHH-HHHHHhhhh----cCCCC-eEEEEEeCCCC-CHHHHHHHHHHHhCCC----
Q 010355 161 VINALK-NPDVHMIGAYGMAGVGKTMLV-KEVARQAKA----DKLFD-EVVYAEVSQRP-DVKKIQGQIADKLGLK---- 228 (512)
Q Consensus 161 l~~~L~-~~~~~vi~I~G~gGiGKTtLa-~~v~~~~~~----~~~f~-~~~wv~~~~~~-~~~~ll~~i~~~l~~~---- 228 (512)
.++.|. -..-.-++|.|.+|+|||+|| ..+++.... .++.+ .++++-+++.. ...++++.+...-.+.
T Consensus 152 aID~l~PigrGQR~~I~g~~g~GKT~Lal~~I~~q~~~~~~~~~~~d~~~V~~~IGeR~~Ev~~~~~~~~~~g~m~~tvv 231 (510)
T 2ck3_A 152 AVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTIV 231 (510)
T ss_dssp HHHHHSCCBTTCBCEEEESTTSSHHHHHHHHHHHTHHHHTSCCTTTCCEEEEEEESCCHHHHHHHHHHHHHTTCGGGEEE
T ss_pred eeccccccccCCEEEEecCCCCCchHHHHHHHHHHHhhccccccCCCeEEEEEECCCCcHHHHHHHHHHHhcCCcccceE
Confidence 344444 223356789999999999995 566666542 11233 46778887765 4556666665432211
Q ss_pred ---CCCCCchH------HHHHHHHHHh-CCCeEEEEEeCCC
Q 010355 229 ---FYEESESG------RARKLCERLK-KEKKILVILDDIW 259 (512)
Q Consensus 229 ---~~~~~~~~------~~~~l~~~l~-~~k~~LlVlDdv~ 259 (512)
....+... ....+.+++. +++.+||++||+.
T Consensus 232 V~atad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~Dslt 272 (510)
T 2ck3_A 232 VSATASDAAPLQYLAPYSGCSMGEYFRDNGKHALIIYDDLS 272 (510)
T ss_dssp EEECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEETHH
T ss_pred EEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEEcCHH
Confidence 01111111 1224445554 4799999999984
No 392
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=92.51 E-value=0.11 Score=49.53 Aligned_cols=34 Identities=18% Similarity=0.437 Sum_probs=26.5
Q ss_pred HHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHhhh
Q 010355 158 LNDVINALKNPDVHMIGAYGMAGVGKTMLVKEVARQAK 195 (512)
Q Consensus 158 l~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 195 (512)
++.|...+.. .+++|+|+.|+|||||++.+. ...
T Consensus 156 i~~L~~~l~G---~i~~l~G~sG~GKSTLln~l~-~~~ 189 (302)
T 2yv5_A 156 IDELVDYLEG---FICILAGPSGVGKSSILSRLT-GEE 189 (302)
T ss_dssp HHHHHHHTTT---CEEEEECSTTSSHHHHHHHHH-SCC
T ss_pred HHHHHhhccC---cEEEEECCCCCCHHHHHHHHH-Hhh
Confidence 4556665542 588999999999999999998 543
No 393
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=92.50 E-value=0.046 Score=52.15 Aligned_cols=26 Identities=19% Similarity=0.312 Sum_probs=22.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhh
Q 010355 169 DVHMIGAYGMAGVGKTMLVKEVARQA 194 (512)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 194 (512)
.-.+++|+|+.|+|||||++.++...
T Consensus 79 ~Ge~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 79 PGQTLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp TTCEEEEESSSCHHHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCchHHHHHHHHHcCC
Confidence 34789999999999999999987654
No 394
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=92.47 E-value=0.065 Score=46.05 Aligned_cols=24 Identities=29% Similarity=0.242 Sum_probs=20.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHh
Q 010355 170 VHMIGAYGMAGVGKTMLVKEVARQ 193 (512)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~v~~~ 193 (512)
.--|+|+|.+|+|||||+..+...
T Consensus 6 ~~ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 6 QLKIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHGG
T ss_pred eEEEEEECcCCCCHHHHHHHHHhC
Confidence 345889999999999999998754
No 395
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=92.47 E-value=0.069 Score=46.87 Aligned_cols=24 Identities=21% Similarity=0.274 Sum_probs=20.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHh
Q 010355 170 VHMIGAYGMAGVGKTMLVKEVARQ 193 (512)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~v~~~ 193 (512)
...|+|+|.+|+|||||+..+...
T Consensus 23 ~~ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 23 HGKLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp -CEEEEEESTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 356889999999999999998864
No 396
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=92.46 E-value=0.079 Score=48.10 Aligned_cols=25 Identities=16% Similarity=0.158 Sum_probs=22.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhhh
Q 010355 171 HMIGAYGMAGVGKTMLVKEVARQAK 195 (512)
Q Consensus 171 ~vi~I~G~gGiGKTtLa~~v~~~~~ 195 (512)
..++|.|++|+||||+|+.++....
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~~~g 33 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKEKFG 33 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred cceeeECCCCCCHHHHHHHHHHHhC
Confidence 4689999999999999999988764
No 397
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=92.45 E-value=0.07 Score=51.99 Aligned_cols=25 Identities=32% Similarity=0.533 Sum_probs=22.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhh
Q 010355 170 VHMIGAYGMAGVGKTMLVKEVARQA 194 (512)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~v~~~~ 194 (512)
-.+++|.|+.|+|||||.+.++--.
T Consensus 41 Ge~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 41 GEMVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Confidence 3689999999999999999998654
No 398
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=92.43 E-value=0.11 Score=52.68 Aligned_cols=86 Identities=19% Similarity=0.262 Sum_probs=50.8
Q ss_pred ceEEEEEcCCCCcHHHHHH-HHHHhhhhcCCCC-eEEEEEeCCCC-CHHHHHHHHHHHhCCC-------CCCCC------
Q 010355 170 VHMIGAYGMAGVGKTMLVK-EVARQAKADKLFD-EVVYAEVSQRP-DVKKIQGQIADKLGLK-------FYEES------ 233 (512)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~-~v~~~~~~~~~f~-~~~wv~~~~~~-~~~~ll~~i~~~l~~~-------~~~~~------ 233 (512)
-.-++|.|.+|+|||+||. .+++... .+ .++++-+++.. ...++++.+...-... ....+
T Consensus 163 GQR~~Ifg~~g~GKT~Lal~~I~~~~~----~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~rtvvV~atad~p~~~r~~ 238 (507)
T 1fx0_A 163 GQRELIIGDRQTGKTAVATDTILNQQG----QNVICVYVAIGQKASSVAQVVTNFQERGAMEYTIVVAETADSPATLQYL 238 (507)
T ss_dssp TCBCBEEESSSSSHHHHHHHHHHTCCT----TTCEEEEEEESCCHHHHHHHHHHTGGGTGGGSEEEEEECTTSCGGGTTH
T ss_pred CCEEEEecCCCCCccHHHHHHHHHhhc----CCcEEEEEEcCCCchHHHHHHHHHHhcCccccceEEEECCCCCHHHHHH
Confidence 3567899999999999964 6666542 34 45777777765 3445555554321111 00011
Q ss_pred chHHHHHHHHHHh-CCCeEEEEEeCCC
Q 010355 234 ESGRARKLCERLK-KEKKILVILDDIW 259 (512)
Q Consensus 234 ~~~~~~~l~~~l~-~~k~~LlVlDdv~ 259 (512)
.......+.+++. +++.+||++||+.
T Consensus 239 a~~~a~tiAEyfrd~G~dVLli~Dslt 265 (507)
T 1fx0_A 239 APYTGAALAEYFMYRERHTLIIYDDLS 265 (507)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEEECHH
T ss_pred HHHHHHHHHHHHHHcCCcEEEEEecHH
Confidence 1112334445554 4799999999984
No 399
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=92.42 E-value=0.12 Score=53.85 Aligned_cols=27 Identities=15% Similarity=0.145 Sum_probs=24.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhh
Q 010355 169 DVHMIGAYGMAGVGKTMLVKEVARQAK 195 (512)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 195 (512)
...+|.|.|++|+||||+|+.+.....
T Consensus 395 ~~~~I~l~GlsGSGKSTiA~~La~~L~ 421 (573)
T 1m8p_A 395 QGFTIFLTGYMNSGKDAIARALQVTLN 421 (573)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred cceEEEeecCCCCCHHHHHHHHHHHhc
Confidence 457899999999999999999998865
No 400
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=92.42 E-value=0.074 Score=46.33 Aligned_cols=25 Identities=28% Similarity=0.319 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhh
Q 010355 170 VHMIGAYGMAGVGKTMLVKEVARQA 194 (512)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~v~~~~ 194 (512)
..-|+|+|.+|+|||||+..+....
T Consensus 11 ~~ki~v~G~~~~GKSsli~~l~~~~ 35 (195)
T 3bc1_A 11 LIKFLALGDSGVGKTSVLYQYTDGK 35 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCC
Confidence 3568899999999999999998743
No 401
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=92.40 E-value=0.14 Score=51.20 Aligned_cols=28 Identities=18% Similarity=0.158 Sum_probs=24.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHhhh
Q 010355 168 PDVHMIGAYGMAGVGKTMLVKEVARQAK 195 (512)
Q Consensus 168 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 195 (512)
....+++|+|+.|+|||||++.++....
T Consensus 165 ~~ggii~I~GpnGSGKTTlL~allg~l~ 192 (418)
T 1p9r_A 165 RPHGIILVTGPTGSGKSTTLYAGLQELN 192 (418)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred hcCCeEEEECCCCCCHHHHHHHHHhhcC
Confidence 4557899999999999999999988764
No 402
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=92.39 E-value=0.076 Score=45.95 Aligned_cols=25 Identities=24% Similarity=0.311 Sum_probs=21.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhh
Q 010355 170 VHMIGAYGMAGVGKTMLVKEVARQA 194 (512)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~v~~~~ 194 (512)
.--|+|+|.+|+|||||+..+....
T Consensus 18 ~~ki~v~G~~~~GKSsl~~~l~~~~ 42 (183)
T 3kkq_A 18 TYKLVVVGDGGVGKSALTIQFFQKI 42 (183)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCC
Confidence 4567899999999999999998653
No 403
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=92.39 E-value=0.18 Score=45.30 Aligned_cols=26 Identities=19% Similarity=0.215 Sum_probs=23.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhhh
Q 010355 170 VHMIGAYGMAGVGKTMLVKEVARQAK 195 (512)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 195 (512)
...|+|.|+.|+||||+++.++....
T Consensus 5 g~~i~~eG~~g~GKst~~~~l~~~l~ 30 (216)
T 3tmk_A 5 GKLILIEGLDRTGKTTQCNILYKKLQ 30 (216)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHHHC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 46899999999999999999999876
No 404
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=92.38 E-value=0.16 Score=53.35 Aligned_cols=41 Identities=20% Similarity=0.112 Sum_probs=31.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCC
Q 010355 168 PDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQ 210 (512)
Q Consensus 168 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~ 210 (512)
...+++.+.|.||+||||+|..++...... -..++.|+...
T Consensus 6 ~~~~i~~~sgkGGvGKTT~a~~lA~~lA~~--G~rVLlvd~D~ 46 (589)
T 1ihu_A 6 NIPPYLFFTGKGGVGKTSISCATAIRLAEQ--GKRVLLVSTDP 46 (589)
T ss_dssp SCCSEEEEECSTTSSHHHHHHHHHHHHHHT--TCCEEEEECCT
T ss_pred CCCEEEEEeCCCcCHHHHHHHHHHHHHHHC--CCcEEEEECCC
Confidence 456789999999999999999998877643 23466666553
No 405
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=92.38 E-value=0.075 Score=46.12 Aligned_cols=24 Identities=25% Similarity=0.378 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhh
Q 010355 171 HMIGAYGMAGVGKTMLVKEVARQA 194 (512)
Q Consensus 171 ~vi~I~G~gGiGKTtLa~~v~~~~ 194 (512)
--|+|+|.+|+|||||+..+....
T Consensus 5 ~ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 5 YKLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEEECCCCCCHHHHHHHHHhCC
Confidence 357899999999999999998654
No 406
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=92.36 E-value=0.082 Score=51.91 Aligned_cols=26 Identities=23% Similarity=0.364 Sum_probs=23.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhhh
Q 010355 170 VHMIGAYGMAGVGKTMLVKEVARQAK 195 (512)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 195 (512)
...++|+|..|+|||||++.++....
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~ 195 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFN 195 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 46889999999999999999988764
No 407
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=92.36 E-value=0.077 Score=46.47 Aligned_cols=25 Identities=36% Similarity=0.508 Sum_probs=21.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhh
Q 010355 170 VHMIGAYGMAGVGKTMLVKEVARQA 194 (512)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~v~~~~ 194 (512)
.--|+|+|.+|+|||||+..+....
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~~~ 49 (193)
T 2oil_A 25 VFKVVLIGESGVGKTNLLSRFTRNE 49 (193)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCC
Confidence 3568899999999999999988753
No 408
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=92.34 E-value=0.084 Score=46.08 Aligned_cols=26 Identities=19% Similarity=0.236 Sum_probs=22.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhh
Q 010355 169 DVHMIGAYGMAGVGKTMLVKEVARQA 194 (512)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 194 (512)
....|+|+|.+|+|||||+..+....
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 22 LKGEVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp TTCEEEEEEBTTSSHHHHHHHHHTSC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCc
Confidence 34578899999999999999988753
No 409
>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens}
Probab=92.32 E-value=0.026 Score=54.38 Aligned_cols=14 Identities=0% Similarity=0.209 Sum_probs=8.5
Q ss_pred CCCHHHHHHHHHHH
Q 010355 302 VLNESEARDLFKKL 315 (512)
Q Consensus 302 ~L~~~ea~~Lf~~~ 315 (512)
+++.++...++.+.
T Consensus 160 GfS~~ev~~mv~r~ 173 (335)
T 4fp9_B 160 LFTVQQVTKILHSC 173 (335)
T ss_dssp CCCHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHhC
Confidence 46666666666654
No 410
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=92.30 E-value=0.085 Score=52.50 Aligned_cols=25 Identities=20% Similarity=0.353 Sum_probs=22.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHh
Q 010355 169 DVHMIGAYGMAGVGKTMLVKEVARQ 193 (512)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~v~~~ 193 (512)
...+++|+|+.|+|||||.+.+...
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~Gl 92 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRGI 92 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCcHHHHHHHHhCC
Confidence 4569999999999999999999874
No 411
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=92.30 E-value=0.074 Score=52.26 Aligned_cols=26 Identities=23% Similarity=0.350 Sum_probs=22.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhhh
Q 010355 170 VHMIGAYGMAGVGKTMLVKEVARQAK 195 (512)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 195 (512)
-.+++|+|+.|+|||||.+.++--..
T Consensus 29 Ge~~~llGpsGsGKSTLLr~iaGl~~ 54 (381)
T 3rlf_A 29 GEFVVFVGPSGCGKSTLLRMIAGLET 54 (381)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CCEEEEEcCCCchHHHHHHHHHcCCC
Confidence 36899999999999999999987543
No 412
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=92.30 E-value=0.075 Score=45.61 Aligned_cols=23 Identities=26% Similarity=0.304 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHh
Q 010355 171 HMIGAYGMAGVGKTMLVKEVARQ 193 (512)
Q Consensus 171 ~vi~I~G~gGiGKTtLa~~v~~~ 193 (512)
--|+|+|.+|+|||||+..+...
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 45789999999999999999864
No 413
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=92.29 E-value=0.077 Score=46.43 Aligned_cols=24 Identities=29% Similarity=0.221 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhh
Q 010355 171 HMIGAYGMAGVGKTMLVKEVARQA 194 (512)
Q Consensus 171 ~vi~I~G~gGiGKTtLa~~v~~~~ 194 (512)
--|+|+|.+|+|||||++.+....
T Consensus 15 ~ki~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 15 FKIVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHTS
T ss_pred cEEEEECCCCCCHHHHHHHHHhhc
Confidence 467899999999999997666543
No 414
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=92.28 E-value=0.075 Score=51.87 Aligned_cols=26 Identities=27% Similarity=0.461 Sum_probs=22.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhh
Q 010355 169 DVHMIGAYGMAGVGKTMLVKEVARQA 194 (512)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 194 (512)
.-.+++|+|+.|+|||||++.++.-.
T Consensus 53 ~Gei~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 53 AGQIYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEEcCCCchHHHHHHHHhcCC
Confidence 34689999999999999999987654
No 415
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=92.28 E-value=0.075 Score=46.09 Aligned_cols=25 Identities=24% Similarity=0.388 Sum_probs=21.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhh
Q 010355 170 VHMIGAYGMAGVGKTMLVKEVARQA 194 (512)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~v~~~~ 194 (512)
..-|+|+|.+|+|||||+..+....
T Consensus 10 ~~ki~v~G~~~~GKSsli~~l~~~~ 34 (186)
T 2bme_A 10 LFKFLVIGNAGTGKSCLLHQFIEKK 34 (186)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCC
Confidence 3568899999999999999998653
No 416
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=92.27 E-value=0.08 Score=45.80 Aligned_cols=23 Identities=26% Similarity=0.209 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHh
Q 010355 171 HMIGAYGMAGVGKTMLVKEVARQ 193 (512)
Q Consensus 171 ~vi~I~G~gGiGKTtLa~~v~~~ 193 (512)
--|+|+|.+|+|||||+..+...
T Consensus 6 ~~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 6 IKCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 35789999999999999998764
No 417
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=92.26 E-value=0.076 Score=51.83 Aligned_cols=25 Identities=24% Similarity=0.271 Sum_probs=22.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhh
Q 010355 170 VHMIGAYGMAGVGKTMLVKEVARQA 194 (512)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~v~~~~ 194 (512)
-.+++|.|+.|+|||||.+.++--.
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 29 GEFVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCEEEEEcCCCchHHHHHHHHHCCC
Confidence 4689999999999999999998654
No 418
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=92.23 E-value=0.082 Score=45.60 Aligned_cols=24 Identities=25% Similarity=0.209 Sum_probs=20.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHh
Q 010355 170 VHMIGAYGMAGVGKTMLVKEVARQ 193 (512)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~v~~~ 193 (512)
.--|+|+|.+|+|||||+..+...
T Consensus 8 ~~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 8 FIKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 345789999999999999998764
No 419
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=92.23 E-value=0.063 Score=50.84 Aligned_cols=27 Identities=22% Similarity=0.378 Sum_probs=22.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhh
Q 010355 169 DVHMIGAYGMAGVGKTMLVKEVARQAK 195 (512)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 195 (512)
.-.+++|+|+.|+|||||++.++....
T Consensus 63 ~Ge~~~i~G~NGsGKSTLlk~l~Gl~~ 89 (290)
T 2bbs_A 63 RGQLLAVAGSTGAGKTSLLMMIMGELE 89 (290)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 346899999999999999999876543
No 420
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=92.22 E-value=0.082 Score=45.55 Aligned_cols=24 Identities=25% Similarity=0.358 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhh
Q 010355 171 HMIGAYGMAGVGKTMLVKEVARQA 194 (512)
Q Consensus 171 ~vi~I~G~gGiGKTtLa~~v~~~~ 194 (512)
.-|+|+|.+|+|||||+..+....
T Consensus 13 ~ki~v~G~~~~GKSsli~~l~~~~ 36 (181)
T 2efe_B 13 AKLVLLGDVGAGKSSLVLRFVKDQ 36 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHCC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 468899999999999999998753
No 421
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=92.20 E-value=0.061 Score=47.49 Aligned_cols=23 Identities=26% Similarity=0.420 Sum_probs=19.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHH
Q 010355 169 DVHMIGAYGMAGVGKTMLVKEVA 191 (512)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~v~ 191 (512)
...-|+|+|.+|+|||||+..+.
T Consensus 22 ~~~ki~vvG~~~vGKSsLi~~l~ 44 (195)
T 3cbq_A 22 GIFKVMLVGESGVGKSTLAGTFG 44 (195)
T ss_dssp CEEEEEEECSTTSSHHHHHHHTC
T ss_pred cEEEEEEECCCCCCHHHHHHHHH
Confidence 34578999999999999999885
No 422
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=92.20 E-value=0.083 Score=45.71 Aligned_cols=25 Identities=28% Similarity=0.422 Sum_probs=21.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhh
Q 010355 170 VHMIGAYGMAGVGKTMLVKEVARQA 194 (512)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~v~~~~ 194 (512)
..-|+|+|.+|+|||||+..+....
T Consensus 18 ~~ki~v~G~~~~GKSsli~~l~~~~ 42 (187)
T 2a9k_A 18 LHKVIMVGSGGVGKSALTLQFMYDE 42 (187)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCC
Confidence 3568899999999999999998753
No 423
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=92.19 E-value=0.071 Score=46.40 Aligned_cols=22 Identities=27% Similarity=0.353 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHh
Q 010355 172 MIGAYGMAGVGKTMLVKEVARQ 193 (512)
Q Consensus 172 vi~I~G~gGiGKTtLa~~v~~~ 193 (512)
-|+|+|.+|+|||||+..+...
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 4789999999999999998764
No 424
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=92.19 E-value=0.035 Score=54.88 Aligned_cols=33 Identities=18% Similarity=0.284 Sum_probs=13.5
Q ss_pred HHHHHHHhc-CCCceEEEEEc--CCCCcHHHHHHHH
Q 010355 158 LNDVINALK-NPDVHMIGAYG--MAGVGKTMLVKEV 190 (512)
Q Consensus 158 l~~l~~~L~-~~~~~vi~I~G--~gGiGKTtLa~~v 190 (512)
+..|...+. ....+.+-+.+ .++.|-..++..+
T Consensus 83 ~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l 118 (386)
T 2ca6_A 83 LRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFL 118 (386)
T ss_dssp HHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHH
T ss_pred HHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHH
Confidence 333444433 23344444433 3344444444444
No 425
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=92.18 E-value=0.078 Score=51.83 Aligned_cols=25 Identities=24% Similarity=0.349 Sum_probs=22.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhh
Q 010355 170 VHMIGAYGMAGVGKTMLVKEVARQA 194 (512)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~v~~~~ 194 (512)
-.+++|.|+.|+|||||.+.++--.
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 29 GEFMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCchHHHHHHHHhcCC
Confidence 4689999999999999999998654
No 426
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=92.15 E-value=0.085 Score=45.40 Aligned_cols=25 Identities=32% Similarity=0.365 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhh
Q 010355 170 VHMIGAYGMAGVGKTMLVKEVARQA 194 (512)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~v~~~~ 194 (512)
.--|+|+|.+|+|||||+..+....
T Consensus 10 ~~~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 10 AFKVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCC
Confidence 3467899999999999999988754
No 427
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=92.12 E-value=0.094 Score=50.84 Aligned_cols=29 Identities=21% Similarity=0.377 Sum_probs=24.8
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHHHhhh
Q 010355 167 NPDVHMIGAYGMAGVGKTMLVKEVARQAK 195 (512)
Q Consensus 167 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 195 (512)
-....+++|+|++|+|||||.+.+.....
T Consensus 52 ~~~g~~v~i~G~~GaGKSTLl~~l~g~~~ 80 (337)
T 2qm8_A 52 TGRAIRVGITGVPGVGKSTTIDALGSLLT 80 (337)
T ss_dssp CCCSEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHhhh
Confidence 34568999999999999999999987654
No 428
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=92.11 E-value=0.084 Score=46.19 Aligned_cols=24 Identities=25% Similarity=0.265 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhh
Q 010355 171 HMIGAYGMAGVGKTMLVKEVARQA 194 (512)
Q Consensus 171 ~vi~I~G~gGiGKTtLa~~v~~~~ 194 (512)
--|+|+|.+|+|||||+..+....
T Consensus 24 ~ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 24 FKLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred eEEEEECCCCcCHHHHHHHHhcCC
Confidence 457899999999999999998754
No 429
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=92.10 E-value=0.08 Score=51.97 Aligned_cols=25 Identities=24% Similarity=0.311 Sum_probs=22.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhh
Q 010355 170 VHMIGAYGMAGVGKTMLVKEVARQA 194 (512)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~v~~~~ 194 (512)
-.+++|.|+.|+|||||.+.++--.
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 29 GEFMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCcHHHHHHHHHHcCC
Confidence 3689999999999999999998654
No 430
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=92.10 E-value=0.082 Score=45.66 Aligned_cols=25 Identities=24% Similarity=0.327 Sum_probs=21.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhh
Q 010355 170 VHMIGAYGMAGVGKTMLVKEVARQA 194 (512)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~v~~~~ 194 (512)
..-|+|+|.+|+|||||+..+....
T Consensus 6 ~~ki~~~G~~~~GKSsli~~l~~~~ 30 (181)
T 3t5g_A 6 SRKIAILGYRSVGKSSLTIQFVEGQ 30 (181)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSS
T ss_pred eEEEEEECcCCCCHHHHHHHHHcCC
Confidence 4578899999999999999998643
No 431
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=92.09 E-value=0.34 Score=59.77 Aligned_cols=146 Identities=15% Similarity=0.091 Sum_probs=0.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHh--------CCCCCCCCchHHHHHHHHH
Q 010355 173 IGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIADKL--------GLKFYEESESGRARKLCER 244 (512)
Q Consensus 173 i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~i~~~l--------~~~~~~~~~~~~~~~l~~~ 244 (512)
|.++|++|+|||+++..+..... -...+.++.+...+...++..+-..+ |.-..+.
T Consensus 1307 vLL~GptGtGKT~li~~~L~~l~----~~~~~~infS~~Tta~~l~~~~e~~~e~~~~~~~G~~~~p~------------ 1370 (3245)
T 3vkg_A 1307 LILCGPPGSGKTMTLTSTLRAFP----DFEVVSLNFSSATTPELLLKTFDHHCEYKRTPSGETVLRPT------------ 1370 (3245)
T ss_dssp CEEESSTTSSHHHHHHHHGGGCT----TEEEEEECCCTTCCHHHHHHHHHHHEEEEECTTSCEEEEES------------
T ss_pred EEEECCCCCCHHHHHHHHHHhCC----CCceEEEEeeCCCCHHHHHHHHhhcceEEeccCCCcccCCC------------
Q ss_pred HhC-CCeEEEEEeCCCChh-----------------hhhhhCCCCC-----CCCeEEEEEeCCcc------hhccccCCc
Q 010355 245 LKK-EKKILVILDDIWTNL-----------------DLENVGIPFG-----VRGCRVLMTARSQD------VLSSKMDCQ 295 (512)
Q Consensus 245 l~~-~k~~LlVlDdv~~~~-----------------~~~~l~~~~~-----~~gs~iivTtR~~~------v~~~~~~~~ 295 (512)
. +|++++++||+.... +...+..+.. ..+..+|.|..... +..+.....
T Consensus 1371 --~~Gk~~VlFiDDiNmp~~D~yGtQ~~ielLrqlld~~g~yd~~~~~~~~i~d~~~vaamnPp~~gGr~~l~~Rf~r~F 1448 (3245)
T 3vkg_A 1371 --QLGKWLVVFCDEINLPSTDKYGTQRVITFIRQMVEKGGFWRTSDHTWIKLDKIQFVGACNPPTDAGRVQLTHRFLRHA 1448 (3245)
T ss_dssp --STTCEEEEEETTTTCCCCCTTSCCHHHHHHHHHHHHSEEEETTTTEEEEESSEEEEEEECCTTSTTCCCCCHHHHTTC
T ss_pred --cCCceEEEEecccCCCCccccccccHHHHHHHHHHcCCeEECCCCeEEEecCeEEEEEcCCCCCCCCccCCHHHHhhc
Q ss_pred cceecCCCCHHHHHHHHHHHhC-CCCCCchhHHHHHHHHHHc
Q 010355 296 NNFLIGVLNESEARDLFKKLVG-DKIENNDLKSLAMNIVKAC 336 (512)
Q Consensus 296 ~~~~l~~L~~~ea~~Lf~~~~~-~~~~~~~~~~~~~~I~~~~ 336 (512)
.++.+...+.+.-..+|..... -....+.+...+..|+..+
T Consensus 1449 ~vi~i~~ps~esL~~If~til~~~l~~~p~l~~~~~~lv~at 1490 (3245)
T 3vkg_A 1449 PILLVDFPSTSSLTQIYGTFNRALMKLLPNLRSFADNLTDAM 1490 (3245)
T ss_dssp CEEECCCCCHHHHHHHHHHHHHHHTTSCGGGTTSHHHHHHHH
T ss_pred eEEEeCCCCHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHH
No 432
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=92.06 E-value=0.078 Score=45.60 Aligned_cols=24 Identities=29% Similarity=0.401 Sum_probs=20.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHh
Q 010355 170 VHMIGAYGMAGVGKTMLVKEVARQ 193 (512)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~v~~~ 193 (512)
..-|+|+|.+|+|||||+..+...
T Consensus 9 ~~~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 9 LFKLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp EEEEEEECCTTSCHHHHHHHHCSC
T ss_pred ceEEEEECCCCCCHHHHHHHHhcC
Confidence 456889999999999999998654
No 433
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=92.05 E-value=0.082 Score=51.87 Aligned_cols=25 Identities=24% Similarity=0.331 Sum_probs=22.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhh
Q 010355 170 VHMIGAYGMAGVGKTMLVKEVARQA 194 (512)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~v~~~~ 194 (512)
-.+++|.|+.|+|||||.+.++--.
T Consensus 37 Ge~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 37 GEFLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCChHHHHHHHHHcCC
Confidence 4689999999999999999998654
No 434
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=92.05 E-value=0.087 Score=46.55 Aligned_cols=26 Identities=27% Similarity=0.402 Sum_probs=21.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhh
Q 010355 169 DVHMIGAYGMAGVGKTMLVKEVARQA 194 (512)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 194 (512)
...-|+|+|.+|+|||||+..+....
T Consensus 13 ~~~ki~v~G~~~~GKSsli~~l~~~~ 38 (206)
T 2bov_A 13 ALHKVIMVGSGGVGKSALTLQFMYDE 38 (206)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCC
Confidence 34578899999999999999988653
No 435
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=92.05 E-value=0.15 Score=49.41 Aligned_cols=29 Identities=17% Similarity=0.295 Sum_probs=24.9
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHHHhhh
Q 010355 167 NPDVHMIGAYGMAGVGKTMLVKEVARQAK 195 (512)
Q Consensus 167 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 195 (512)
.....+|+|+|.+|+|||||+..++....
T Consensus 53 ~~~~~~i~i~G~~g~GKSTl~~~l~~~~~ 81 (341)
T 2p67_A 53 CGNTLRLGVTGTPGAGKSTFLEAFGMLLI 81 (341)
T ss_dssp CSCSEEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred cCCCEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 45678999999999999999999987654
No 436
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=92.00 E-value=0.09 Score=45.90 Aligned_cols=24 Identities=25% Similarity=0.285 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhh
Q 010355 171 HMIGAYGMAGVGKTMLVKEVARQA 194 (512)
Q Consensus 171 ~vi~I~G~gGiGKTtLa~~v~~~~ 194 (512)
--|+|+|.+|+|||||+..+....
T Consensus 23 ~ki~v~G~~~~GKSsli~~l~~~~ 46 (188)
T 1zd9_A 23 MELTLVGLQYSGKTTFVNVIASGQ 46 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHHcCC
Confidence 468899999999999999998653
No 437
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=92.00 E-value=0.11 Score=45.65 Aligned_cols=25 Identities=32% Similarity=0.484 Sum_probs=21.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHh
Q 010355 169 DVHMIGAYGMAGVGKTMLVKEVARQ 193 (512)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~v~~~ 193 (512)
..--|+|+|.+|+|||||+..+...
T Consensus 27 ~~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 27 AEVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 4456889999999999999999875
No 438
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=91.98 E-value=0.088 Score=46.58 Aligned_cols=26 Identities=27% Similarity=0.354 Sum_probs=22.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhh
Q 010355 169 DVHMIGAYGMAGVGKTMLVKEVARQA 194 (512)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 194 (512)
...-|+|+|.+|+|||||+..+....
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 7 VLLKVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCC
Confidence 34568899999999999999998754
No 439
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=91.97 E-value=0.085 Score=46.86 Aligned_cols=25 Identities=40% Similarity=0.505 Sum_probs=21.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhh
Q 010355 170 VHMIGAYGMAGVGKTMLVKEVARQA 194 (512)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~v~~~~ 194 (512)
..-|+|+|.+|+|||||+..+....
T Consensus 26 ~~ki~lvG~~~vGKSsLi~~l~~~~ 50 (201)
T 2ew1_A 26 LFKIVLIGNAGVGKTCLVRRFTQGL 50 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSS
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCC
Confidence 4568899999999999999988653
No 440
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=91.97 E-value=0.17 Score=52.46 Aligned_cols=44 Identities=14% Similarity=0.150 Sum_probs=31.0
Q ss_pred cchHHHHHHHHHhc--CCCceEEEEEcCCCCcHHHHHHHHHHhhhh
Q 010355 153 SRMSTLNDVINALK--NPDVHMIGAYGMAGVGKTMLVKEVARQAKA 196 (512)
Q Consensus 153 gR~~~l~~l~~~L~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 196 (512)
.|.+....+..... .....+|.|.|++|+||||+|+.+......
T Consensus 353 ~r~eV~~~lr~~~~~~~~~~~~I~l~G~~GsGKSTia~~La~~L~~ 398 (546)
T 2gks_A 353 TRPEVAEILAETYVPKHKQGFCVWLTGLPCAGKSTIAEILATMLQA 398 (546)
T ss_dssp SCHHHHHHHHHHSCCGGGCCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHhhccccccceEEEccCCCCCCHHHHHHHHHHHhhh
Confidence 44444444444442 234578999999999999999999887653
No 441
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=91.96 E-value=0.089 Score=46.19 Aligned_cols=25 Identities=20% Similarity=0.279 Sum_probs=21.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhh
Q 010355 170 VHMIGAYGMAGVGKTMLVKEVARQA 194 (512)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~v~~~~ 194 (512)
.--|+|+|.+|+|||||+..+....
T Consensus 7 ~~ki~v~G~~~~GKSsli~~l~~~~ 31 (208)
T 3clv_A 7 SYKTVLLGESSVGKSSIVLRLTKDT 31 (208)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCc
Confidence 3468899999999999999998763
No 442
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=91.95 E-value=0.07 Score=51.89 Aligned_cols=25 Identities=24% Similarity=0.317 Sum_probs=22.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhh
Q 010355 170 VHMIGAYGMAGVGKTMLVKEVARQA 194 (512)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~v~~~~ 194 (512)
-.+++|.|+.|+|||||.+.++--.
T Consensus 26 Ge~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 26 GEYFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp TCEEEEECCCTHHHHHHHHHHHTSS
T ss_pred CCEEEEECCCCccHHHHHHHHHcCC
Confidence 3689999999999999999998654
No 443
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=91.94 E-value=0.085 Score=46.98 Aligned_cols=26 Identities=27% Similarity=0.243 Sum_probs=22.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhh
Q 010355 169 DVHMIGAYGMAGVGKTMLVKEVARQA 194 (512)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 194 (512)
...-|+|+|.+|+|||||+..+....
T Consensus 27 ~~~ki~vvG~~~vGKSsLi~~l~~~~ 52 (205)
T 1gwn_A 27 VKCKIVVVGDSQCGKTALLHVFAKDC 52 (205)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcCC
Confidence 34568899999999999999998753
No 444
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=91.94 E-value=0.075 Score=46.71 Aligned_cols=26 Identities=19% Similarity=0.231 Sum_probs=21.5
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHHH
Q 010355 167 NPDVHMIGAYGMAGVGKTMLVKEVAR 192 (512)
Q Consensus 167 ~~~~~vi~I~G~gGiGKTtLa~~v~~ 192 (512)
.....-|+|+|.+|+|||||+..+..
T Consensus 26 ~~~~~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 26 GKKQMRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp TTSCEEEEEEESTTSSHHHHHHHHCS
T ss_pred cCCccEEEEECCCCCCHHHHHHHHHh
Confidence 34456689999999999999998864
No 445
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=91.91 E-value=0.091 Score=46.89 Aligned_cols=25 Identities=20% Similarity=0.266 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhh
Q 010355 170 VHMIGAYGMAGVGKTMLVKEVARQA 194 (512)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~v~~~~ 194 (512)
...|+|+|.+|+|||||+..+....
T Consensus 7 ~~ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 7 QRAVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp -CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4578899999999999999998754
No 446
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=91.90 E-value=0.093 Score=45.99 Aligned_cols=25 Identities=28% Similarity=0.301 Sum_probs=21.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhh
Q 010355 170 VHMIGAYGMAGVGKTMLVKEVARQA 194 (512)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~v~~~~ 194 (512)
.--|+|+|.+|+|||||+..+....
T Consensus 23 ~~ki~~vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 23 ALKIVVVGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eeEEEEECcCCCCHHHHHHHHhcCC
Confidence 3568899999999999999998754
No 447
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=91.88 E-value=0.093 Score=47.30 Aligned_cols=22 Identities=27% Similarity=0.320 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHh
Q 010355 172 MIGAYGMAGVGKTMLVKEVARQ 193 (512)
Q Consensus 172 vi~I~G~gGiGKTtLa~~v~~~ 193 (512)
-|+|+|.+|+|||+|+..+...
T Consensus 15 KivlvGd~~VGKTsLi~r~~~~ 36 (216)
T 4dkx_A 15 KLVFLGEQSVGKTSLITRFMYD 36 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCcCHHHHHHHHHhC
Confidence 3778999999999999998764
No 448
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=91.88 E-value=0.095 Score=45.85 Aligned_cols=24 Identities=25% Similarity=0.322 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhh
Q 010355 171 HMIGAYGMAGVGKTMLVKEVARQA 194 (512)
Q Consensus 171 ~vi~I~G~gGiGKTtLa~~v~~~~ 194 (512)
--|+|+|.+|+|||||+..+....
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~~~~ 45 (191)
T 2a5j_A 22 FKYIIIGDTGVGKSCLLLQFTDKR 45 (191)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCC
Confidence 457899999999999999988643
No 449
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=91.88 E-value=0.088 Score=46.53 Aligned_cols=26 Identities=23% Similarity=0.270 Sum_probs=22.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhh
Q 010355 169 DVHMIGAYGMAGVGKTMLVKEVARQA 194 (512)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 194 (512)
...-|+|+|.+|+|||||+..+....
T Consensus 23 ~~~ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 23 RYRKVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred CcEEEEEECCCCcCHHHHHHHHHhCC
Confidence 34678999999999999999998754
No 450
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=91.86 E-value=0.088 Score=47.27 Aligned_cols=23 Identities=30% Similarity=0.316 Sum_probs=19.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHH
Q 010355 170 VHMIGAYGMAGVGKTMLVKEVAR 192 (512)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~v~~ 192 (512)
..-|+|+|.+|+|||||+..+..
T Consensus 37 ~~kVvlvG~~~vGKSSLl~r~~~ 59 (211)
T 2g3y_A 37 YYRVVLIGEQGVGKSTLANIFAG 59 (211)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 35688999999999999999873
No 451
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=91.86 E-value=0.095 Score=45.71 Aligned_cols=25 Identities=24% Similarity=0.278 Sum_probs=21.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhh
Q 010355 170 VHMIGAYGMAGVGKTMLVKEVARQA 194 (512)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~v~~~~ 194 (512)
..-|+|+|.+|+|||||+..+....
T Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 22 MFKLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCC
Confidence 3568899999999999999998754
No 452
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=91.85 E-value=1.6 Score=44.09 Aligned_cols=88 Identities=13% Similarity=0.175 Sum_probs=56.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhcccccccccCCCChhHhhhHHHHHHHHHHHHHHHHHHcCCCcccccccCCCcccccc
Q 010355 65 IEQRVENWLITADEILDAAARIIEGTEDTTNRLCPNLNTRYQVSKKAAREVKAAAELLQQEGRFDKVSYRTVPEDVWLTS 144 (512)
Q Consensus 65 ~~~~~~~wl~~vr~~~~d~ed~ld~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~ 144 (512)
.+..+..|..++.++.-.+|-.+|--. . . ....+..+..++..+..++..+....
T Consensus 161 ~~~~~~~~r~~l~~~~a~iEa~iDf~e-d-~----~~~~~~~~~~~i~~l~~~l~~~~~~~------------------- 215 (462)
T 3geh_A 161 LAHPIRQLRANCLDILAEIEARIDFEE-D-L----PPLDDEAIISDIENIAAEISQLLATK------------------- 215 (462)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHTTSSS-S-S----CCCCTTTHHHHHHHHHHHHHHHTTTH-------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccccc-c-C----ChhhHHHHHHHHHHHHHHHHHHHHHh-------------------
Confidence 467899999999999989998887432 1 1 11123345666777777776652111
Q ss_pred ccCccccccchHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHhh
Q 010355 145 IKGYEAFESRMSTLNDVINALKNPDVHMIGAYGMAGVGKTMLVKEVARQA 194 (512)
Q Consensus 145 ~~~~~~~~gR~~~l~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 194 (512)
. ..++. . .+. .|+|+|.+|+|||||...+....
T Consensus 216 --------~----~~~~~---r-~~~-kV~ivG~~nvGKSSLln~L~~~~ 248 (462)
T 3geh_A 216 --------D----KGELL---R-TGL-KVAIVGRPNVGKSSLLNAWSQSD 248 (462)
T ss_dssp --------H----HHHHH---H-HCE-EEEEEECTTSSHHHHHHHHHHHH
T ss_pred --------h----hhhhh---c-CCC-EEEEEcCCCCCHHHHHHHHhCCC
Confidence 0 00111 1 133 38899999999999999998753
No 453
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=91.84 E-value=0.11 Score=53.02 Aligned_cols=27 Identities=26% Similarity=0.346 Sum_probs=23.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhh
Q 010355 169 DVHMIGAYGMAGVGKTMLVKEVARQAK 195 (512)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 195 (512)
...+|.++|++|+||||+++.++....
T Consensus 38 ~~~~IvlvGlpGsGKSTia~~La~~l~ 64 (469)
T 1bif_A 38 CPTLIVMVGLPARGKTYISKKLTRYLN 64 (469)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 446889999999999999999998765
No 454
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=91.80 E-value=0.091 Score=46.05 Aligned_cols=25 Identities=24% Similarity=0.327 Sum_probs=21.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhh
Q 010355 170 VHMIGAYGMAGVGKTMLVKEVARQA 194 (512)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~v~~~~ 194 (512)
.--|+|+|.+|+|||||+..+....
T Consensus 23 ~~ki~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 23 ELKVCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHCC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCC
Confidence 3468899999999999999998754
No 455
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=91.79 E-value=0.11 Score=45.14 Aligned_cols=27 Identities=19% Similarity=0.272 Sum_probs=22.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHhh
Q 010355 168 PDVHMIGAYGMAGVGKTMLVKEVARQA 194 (512)
Q Consensus 168 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 194 (512)
....-|+|+|.+|+|||||+..+....
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGED 42 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCC
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCC
Confidence 445678999999999999999987654
No 456
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=91.76 E-value=0.098 Score=45.62 Aligned_cols=24 Identities=29% Similarity=0.303 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHh
Q 010355 170 VHMIGAYGMAGVGKTMLVKEVARQ 193 (512)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~v~~~ 193 (512)
..-|+|+|.+|+|||||+..+...
T Consensus 20 ~~ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 20 IFKIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHcC
Confidence 456899999999999999998864
No 457
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=91.73 E-value=0.1 Score=45.72 Aligned_cols=25 Identities=28% Similarity=0.397 Sum_probs=21.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhh
Q 010355 170 VHMIGAYGMAGVGKTMLVKEVARQA 194 (512)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~v~~~~ 194 (512)
..-|+|+|.+|+|||||+..+....
T Consensus 16 ~~ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 16 LFKLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCC
Confidence 3568999999999999999998754
No 458
>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal alpha-beta the C-terminal all beta domain., structural genomics; 2.00A {Nostoc SP}
Probab=91.67 E-value=0.12 Score=50.64 Aligned_cols=41 Identities=20% Similarity=0.297 Sum_probs=30.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCCCH
Q 010355 171 HMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDV 214 (512)
Q Consensus 171 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~ 214 (512)
+++.+.|.||+||||+|..++...... -..++-|+. ...++
T Consensus 3 ~i~~~~gkGG~GKTt~a~~la~~la~~--g~~vllvd~-~~~~l 43 (374)
T 3igf_A 3 LILTFLGKSGVARTKIAIAAAKLLASQ--GKRVLLAGL-AEPVL 43 (374)
T ss_dssp EEEEEECSBHHHHHHHHHHHHHHHHHT--TCCEEEEEC-SCSHH
T ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHC--CCCeEEEeC-CCCCh
Confidence 678899999999999999998877643 335666776 44433
No 459
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=91.64 E-value=0.096 Score=45.96 Aligned_cols=24 Identities=29% Similarity=0.447 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHh
Q 010355 170 VHMIGAYGMAGVGKTMLVKEVARQ 193 (512)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~v~~~ 193 (512)
..-|+|+|.+|+|||||+..+...
T Consensus 8 ~~ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 8 DYRVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCcHHHHHHHHHcC
Confidence 456889999999999999999874
No 460
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=91.63 E-value=0.1 Score=45.98 Aligned_cols=25 Identities=24% Similarity=0.303 Sum_probs=21.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHh
Q 010355 169 DVHMIGAYGMAGVGKTMLVKEVARQ 193 (512)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~v~~~ 193 (512)
...-|+|+|.+|+|||||+..+...
T Consensus 27 ~~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 27 KAYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp -CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhC
Confidence 4467899999999999999998764
No 461
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=91.60 E-value=0.066 Score=52.18 Aligned_cols=25 Identities=28% Similarity=0.429 Sum_probs=22.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhh
Q 010355 170 VHMIGAYGMAGVGKTMLVKEVARQA 194 (512)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~v~~~~ 194 (512)
-.+++|+|+.|+|||||.+.++--.
T Consensus 31 Ge~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 31 GERFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp TCEEEEECSCHHHHHHHHHHHHTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Confidence 4689999999999999999998654
No 462
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=91.59 E-value=0.28 Score=51.87 Aligned_cols=62 Identities=16% Similarity=0.153 Sum_probs=40.3
Q ss_pred HHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCCCHHHHHHHHHH
Q 010355 157 TLNDVINALKNPDVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIAD 223 (512)
Q Consensus 157 ~l~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~i~~ 223 (512)
....+...+. .+++.|+|++|+|||+++..+....... -...+.++...+.....+...+..
T Consensus 185 Q~~av~~~l~---~~~~li~GppGTGKT~~~~~~i~~l~~~--~~~~ilv~a~tn~A~~~l~~~l~~ 246 (624)
T 2gk6_A 185 QVYAVKTVLQ---RPLSLIQGPPGTGKTVTSATIVYHLARQ--GNGPVLVCAPSNIAVDQLTEKIHQ 246 (624)
T ss_dssp HHHHHHHHHT---CSEEEEECCTTSCHHHHHHHHHHHHHTS--SSCCEEEEESSHHHHHHHHHHHHT
T ss_pred HHHHHHHHhc---CCCeEEECCCCCCHHHHHHHHHHHHHHc--CCCeEEEEeCcHHHHHHHHHHHHh
Confidence 3444444443 2578899999999999888877665421 234566777766666666666543
No 463
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=91.59 E-value=0.11 Score=45.47 Aligned_cols=24 Identities=29% Similarity=0.368 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhh
Q 010355 171 HMIGAYGMAGVGKTMLVKEVARQA 194 (512)
Q Consensus 171 ~vi~I~G~gGiGKTtLa~~v~~~~ 194 (512)
.-|+|+|.+|+|||||+..+....
T Consensus 16 ~~i~v~G~~~~GKssli~~l~~~~ 39 (195)
T 1x3s_A 16 LKILIIGESGVGKSSLLLRFTDDT 39 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 468899999999999999998753
No 464
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=91.56 E-value=0.069 Score=47.53 Aligned_cols=26 Identities=15% Similarity=0.182 Sum_probs=21.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHh
Q 010355 168 PDVHMIGAYGMAGVGKTMLVKEVARQ 193 (512)
Q Consensus 168 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 193 (512)
.....|+|+|.+|+|||||.+.+...
T Consensus 24 ~~~~~v~lvG~~g~GKSTLl~~l~g~ 49 (210)
T 1pui_A 24 DTGIEVAFAGRSNAGKSSALNTLTNQ 49 (210)
T ss_dssp SCSEEEEEEECTTSSHHHHHTTTCCC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 34567999999999999999887643
No 465
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=91.52 E-value=0.1 Score=46.10 Aligned_cols=24 Identities=29% Similarity=0.289 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhh
Q 010355 171 HMIGAYGMAGVGKTMLVKEVARQA 194 (512)
Q Consensus 171 ~vi~I~G~gGiGKTtLa~~v~~~~ 194 (512)
.-|+|+|.+|+|||||+..+....
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~~ 32 (203)
T 1zbd_A 9 FKILIIGNSSVGKTSFLFRYADDS 32 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTCC
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC
Confidence 468899999999999999987653
No 466
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=91.42 E-value=0.1 Score=46.16 Aligned_cols=25 Identities=24% Similarity=0.390 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhh
Q 010355 170 VHMIGAYGMAGVGKTMLVKEVARQA 194 (512)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~v~~~~ 194 (512)
..-|+|+|.+|+|||||+..+....
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~ 32 (206)
T 2bcg_Y 8 LFKLLLIGNSGVGKSCLLLRFSDDT 32 (206)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCC
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCC
Confidence 3468899999999999999988753
No 467
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=91.42 E-value=0.16 Score=44.97 Aligned_cols=51 Identities=16% Similarity=0.153 Sum_probs=33.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCCCHHHHHHH-HHHHhCCCC
Q 010355 169 DVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQ-IADKLGLKF 229 (512)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~-i~~~l~~~~ 229 (512)
...+|+|+|++|+||+|+|..+..... +..+.- .++.+.++. .+...|+..
T Consensus 10 ~~~II~itGk~~SGKd~va~~l~~~~g----~~~~~v------v~msD~iK~~~a~~~gl~~ 61 (202)
T 3ch4_B 10 PRLVLLFSGKRKSGKDFVTEALQSRLG----ADVCAV------LRLSGPLKEQYAQEHGLNF 61 (202)
T ss_dssp CSEEEEEEECTTSSHHHHHHHHHHHHC----TTTEEE------ECTHHHHHHHHHHTTTCCC
T ss_pred CCEEEEEECCCCCChHHHHHHHHHHcC----CCCceE------EEccHHHHHHHHHHcCCCc
Confidence 457999999999999999999876543 111111 245566663 555666543
No 468
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=91.41 E-value=0.13 Score=54.02 Aligned_cols=27 Identities=19% Similarity=0.204 Sum_probs=24.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhh
Q 010355 169 DVHMIGAYGMAGVGKTMLVKEVARQAK 195 (512)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 195 (512)
...+|.|.|++|+||||+|+.+.....
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L~ 77 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYLV 77 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 457899999999999999999998764
No 469
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=91.41 E-value=0.1 Score=51.59 Aligned_cols=25 Identities=28% Similarity=0.450 Sum_probs=21.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHh
Q 010355 169 DVHMIGAYGMAGVGKTMLVKEVARQ 193 (512)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~v~~~ 193 (512)
.-.+++|+|+.|+|||||.+.++.-
T Consensus 46 ~Ge~~~llGpsGsGKSTLLr~iaGl 70 (390)
T 3gd7_A 46 PGQRVGLLGRTGSGKSTLLSAFLRL 70 (390)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCChHHHHHHHHhCC
Confidence 3468999999999999999998864
No 470
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=91.40 E-value=0.11 Score=49.35 Aligned_cols=25 Identities=28% Similarity=0.399 Sum_probs=22.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHh
Q 010355 169 DVHMIGAYGMAGVGKTMLVKEVARQ 193 (512)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~v~~~ 193 (512)
....|+|+|.+|+|||||...+...
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~ 31 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQ 31 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCC
Confidence 3568999999999999999999864
No 471
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=91.39 E-value=0.16 Score=48.24 Aligned_cols=34 Identities=24% Similarity=0.456 Sum_probs=26.6
Q ss_pred HHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHhh
Q 010355 158 LNDVINALKNPDVHMIGAYGMAGVGKTMLVKEVARQA 194 (512)
Q Consensus 158 l~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 194 (512)
++++..++.. .+++|+|++|+|||||.+.+....
T Consensus 160 v~~lf~~l~g---eiv~l~G~sG~GKSTll~~l~g~~ 193 (301)
T 1u0l_A 160 IEELKEYLKG---KISTMAGLSGVGKSSLLNAINPGL 193 (301)
T ss_dssp HHHHHHHHSS---SEEEEECSTTSSHHHHHHHHSTTC
T ss_pred HHHHHHHhcC---CeEEEECCCCCcHHHHHHHhcccc
Confidence 4556666543 588999999999999999987544
No 472
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=91.31 E-value=0.12 Score=45.20 Aligned_cols=25 Identities=20% Similarity=0.328 Sum_probs=21.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHh
Q 010355 169 DVHMIGAYGMAGVGKTMLVKEVARQ 193 (512)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~v~~~ 193 (512)
...-|+|+|.+|+|||||+..+...
T Consensus 16 ~~~ki~v~G~~~~GKSsl~~~l~~~ 40 (199)
T 4bas_A 16 TKLQVVMCGLDNSGKTTIINQVKPA 40 (199)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHSCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcC
Confidence 4567899999999999999998754
No 473
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=91.31 E-value=0.12 Score=46.75 Aligned_cols=25 Identities=28% Similarity=0.344 Sum_probs=21.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHh
Q 010355 169 DVHMIGAYGMAGVGKTMLVKEVARQ 193 (512)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~v~~~ 193 (512)
....|+|+|.+|+|||||+..+...
T Consensus 28 ~~~kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 28 HKKTIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp TSEEEEEECSTTSSHHHHHHHHTTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4567899999999999999998764
No 474
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=91.28 E-value=0.11 Score=45.74 Aligned_cols=24 Identities=29% Similarity=0.160 Sum_probs=20.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHh
Q 010355 170 VHMIGAYGMAGVGKTMLVKEVARQ 193 (512)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~v~~~ 193 (512)
.--|+|+|.+|+|||||+..+...
T Consensus 20 ~~ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 20 GVKCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHC-
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 356789999999999999988754
No 475
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=91.27 E-value=0.13 Score=46.98 Aligned_cols=25 Identities=20% Similarity=0.211 Sum_probs=21.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHh
Q 010355 169 DVHMIGAYGMAGVGKTMLVKEVARQ 193 (512)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~v~~~ 193 (512)
....|+|+|.+|+|||||+..+...
T Consensus 28 ~~~~i~lvG~~g~GKStlin~l~g~ 52 (239)
T 3lxx_A 28 SQLRIVLVGKTGAGKSATGNSILGR 52 (239)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTS
T ss_pred CceEEEEECCCCCCHHHHHHHHcCC
Confidence 4567899999999999999998864
No 476
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=91.27 E-value=0.088 Score=50.18 Aligned_cols=21 Identities=24% Similarity=0.444 Sum_probs=18.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHH
Q 010355 172 MIGAYGMAGVGKTMLVKEVAR 192 (512)
Q Consensus 172 vi~I~G~gGiGKTtLa~~v~~ 192 (512)
-|+|+|.+|+|||||.+.++.
T Consensus 20 ~I~lvG~nG~GKSTLl~~L~g 40 (301)
T 2qnr_A 20 TLMVVGESGLGKSTLINSLFL 40 (301)
T ss_dssp EEEEEEETTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 348999999999999999764
No 477
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=91.21 E-value=0.09 Score=51.54 Aligned_cols=34 Identities=26% Similarity=0.347 Sum_probs=26.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEE
Q 010355 171 HMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAE 207 (512)
Q Consensus 171 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~ 207 (512)
.+++|+|+.|+|||||++.++..... -.+.+.+.
T Consensus 176 ~~i~ivG~sGsGKSTll~~l~~~~~~---~~g~I~ie 209 (361)
T 2gza_A 176 RVIVVAGETGSGKTTLMKALMQEIPF---DQRLITIE 209 (361)
T ss_dssp CCEEEEESSSSCHHHHHHHHHTTSCT---TSCEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHhcCCC---CceEEEEC
Confidence 57999999999999999999876542 23455554
No 478
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=91.20 E-value=0.33 Score=44.23 Aligned_cols=42 Identities=14% Similarity=0.130 Sum_probs=29.6
Q ss_pred CceEEEEE-cCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCC
Q 010355 169 DVHMIGAY-GMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQR 211 (512)
Q Consensus 169 ~~~vi~I~-G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~ 211 (512)
..++|+|+ +.||+||||+|..++...... .-..++.|++...
T Consensus 3 ~~~vI~v~s~kGGvGKTt~a~~LA~~la~~-~g~~VlliD~D~~ 45 (245)
T 3ea0_A 3 AKRVFGFVSAKGGDGGSCIAANFAFALSQE-PDIHVLAVDISLP 45 (245)
T ss_dssp CCEEEEEEESSTTSSHHHHHHHHHHHHTTS-TTCCEEEEECCTT
T ss_pred CCeEEEEECCCCCcchHHHHHHHHHHHHhC-cCCCEEEEECCCC
Confidence 34677776 679999999999999887642 1235666766533
No 479
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=91.18 E-value=0.11 Score=46.07 Aligned_cols=24 Identities=21% Similarity=0.256 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHh
Q 010355 170 VHMIGAYGMAGVGKTMLVKEVARQ 193 (512)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~v~~~ 193 (512)
..-|+|+|.+|+|||||+..+...
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~ 48 (207)
T 2fv8_A 25 RKKLVVVGDGACGKTCLLIVFSKD 48 (207)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHhcC
Confidence 356889999999999999998864
No 480
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=91.18 E-value=0.11 Score=45.94 Aligned_cols=24 Identities=25% Similarity=0.409 Sum_probs=20.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHh
Q 010355 170 VHMIGAYGMAGVGKTMLVKEVARQ 193 (512)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~v~~~ 193 (512)
.--|+|+|.+|+|||||+..+...
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 25 LFKFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHC-
T ss_pred ceEEEEECcCCCCHHHHHHHHHhC
Confidence 456889999999999999998743
No 481
>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A
Probab=91.15 E-value=0.47 Score=46.98 Aligned_cols=44 Identities=16% Similarity=0.107 Sum_probs=30.9
Q ss_pred CceEEEEE-cCCCCcHHHHHHHHHHhhhhc----CCCCeEEEEEeCCCC
Q 010355 169 DVHMIGAY-GMAGVGKTMLVKEVARQAKAD----KLFDEVVYAEVSQRP 212 (512)
Q Consensus 169 ~~~vi~I~-G~gGiGKTtLa~~v~~~~~~~----~~f~~~~wv~~~~~~ 212 (512)
..++|+|+ |-||+||||+|..++...... ..-..++-|++....
T Consensus 107 ~~~vIav~s~KGGvGKTT~a~nLA~~La~~~~~~~~g~rVlliD~D~q~ 155 (398)
T 3ez2_A 107 EAYVIFISNLKGGVSKTVSTVSLAHAMRAHPHLLMEDLRILVIDLDPQS 155 (398)
T ss_dssp SCEEEEECCSSSSSSHHHHHHHHHHHHHHCTTTGGGCCCEEEEEECTTC
T ss_pred CCeEEEEEeCCCCccHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCCCC
Confidence 45777776 889999999999998876531 112356777776543
No 482
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=91.15 E-value=0.12 Score=45.86 Aligned_cols=25 Identities=28% Similarity=0.385 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhh
Q 010355 170 VHMIGAYGMAGVGKTMLVKEVARQA 194 (512)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~v~~~~ 194 (512)
..-|+|+|.+|+|||||+..+....
T Consensus 20 ~~~i~v~G~~~~GKSsli~~l~~~~ 44 (213)
T 3cph_A 20 IMKILLIGDSGVGKSCLLVRFVEDK 44 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCC
Confidence 3568899999999999999988643
No 483
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=91.12 E-value=0.12 Score=45.29 Aligned_cols=23 Identities=30% Similarity=0.260 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHh
Q 010355 171 HMIGAYGMAGVGKTMLVKEVARQ 193 (512)
Q Consensus 171 ~vi~I~G~gGiGKTtLa~~v~~~ 193 (512)
.-|+|+|.+|+|||||+..+...
T Consensus 19 ~ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 19 LKCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 46889999999999999999875
No 484
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=91.11 E-value=0.16 Score=42.78 Aligned_cols=25 Identities=20% Similarity=0.206 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhh
Q 010355 170 VHMIGAYGMAGVGKTMLVKEVARQA 194 (512)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~v~~~~ 194 (512)
.++.+|+|+.|+|||||..+++.-.
T Consensus 23 ~g~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 23 EGINLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 3688999999999999999887643
No 485
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=91.09 E-value=0.37 Score=44.95 Aligned_cols=53 Identities=11% Similarity=0.132 Sum_probs=36.3
Q ss_pred HHHHHHHHHhc----CCCceEEEEEcC-CCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCC
Q 010355 156 STLNDVINALK----NPDVHMIGAYGM-AGVGKTMLVKEVARQAKADKLFDEVVYAEVSQ 210 (512)
Q Consensus 156 ~~l~~l~~~L~----~~~~~vi~I~G~-gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~ 210 (512)
+.+..|...|. ....++|+|+|. ||+||||+|..++...... -..++.|++..
T Consensus 64 Ea~r~lrt~l~~~~~~~~~kvI~vts~kgG~GKTt~a~nLA~~lA~~--G~rVLLID~D~ 121 (271)
T 3bfv_A 64 EKFRGIRSNIMFANPDSAVQSIVITSEAPGAGKSTIAANLAVAYAQA--GYKTLIVDGDM 121 (271)
T ss_dssp HHHHHHHHHHHHSSTTCCCCEEEEECSSTTSSHHHHHHHHHHHHHHT--TCCEEEEECCS
T ss_pred HHHHHHHHHHHhhccCCCCeEEEEECCCCCCcHHHHHHHHHHHHHhC--CCeEEEEeCCC
Confidence 34444444333 345689999875 8999999999999887642 34567777653
No 486
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=91.08 E-value=0.16 Score=46.00 Aligned_cols=46 Identities=17% Similarity=0.195 Sum_probs=32.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCC
Q 010355 169 DVHMIGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKKIQGQIADKLGLK 228 (512)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~i~~~l~~~ 228 (512)
...+|+|.|+.|+||||+|+.++...... ++ + .+++..++...|+.
T Consensus 13 ~~~iI~i~g~~gsGk~~i~~~la~~lg~~-------~~------d-~~~~~~~a~~~g~~ 58 (223)
T 3hdt_A 13 KNLIITIEREYGSGGRIVGKKLAEELGIH-------FY------D-DDILKLASEKSAVG 58 (223)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHHHTCE-------EE------C-HHHHHHHHHCC---
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHHcCCc-------EE------c-HHHHHHHHHHcCCC
Confidence 34799999999999999999999887521 12 2 45666666666654
No 487
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=91.08 E-value=0.12 Score=50.21 Aligned_cols=27 Identities=30% Similarity=0.423 Sum_probs=23.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhh
Q 010355 169 DVHMIGAYGMAGVGKTMLVKEVARQAK 195 (512)
Q Consensus 169 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 195 (512)
.-.+++|+|..|+|||||.+.++....
T Consensus 70 ~Gq~~gIiG~nGaGKTTLl~~I~g~~~ 96 (347)
T 2obl_A 70 IGQRIGIFAGSGVGKSTLLGMICNGAS 96 (347)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 346899999999999999999998865
No 488
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=91.07 E-value=0.11 Score=45.62 Aligned_cols=24 Identities=25% Similarity=0.227 Sum_probs=20.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHh
Q 010355 170 VHMIGAYGMAGVGKTMLVKEVARQ 193 (512)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~v~~~ 193 (512)
..-|+|+|.+|+|||||++.+.+.
T Consensus 20 ~~ki~~vG~~~vGKTsLi~~l~~~ 43 (196)
T 3llu_A 20 KPRILLMGLRRSGKSSIQKVVFHK 43 (196)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhc
Confidence 356889999999999999876654
No 489
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=91.07 E-value=0.16 Score=46.90 Aligned_cols=41 Identities=22% Similarity=0.199 Sum_probs=30.7
Q ss_pred CceEEEEE-cCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCC
Q 010355 169 DVHMIGAY-GMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQR 211 (512)
Q Consensus 169 ~~~vi~I~-G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~ 211 (512)
..++|+|+ +.||+||||+|..++...... -..++-|++...
T Consensus 5 ~~~vI~v~s~kGGvGKTt~a~~LA~~la~~--g~~VlliD~D~~ 46 (257)
T 1wcv_1 5 KVRRIALANQKGGVGKTTTAINLAAYLARL--GKRVLLVDLDPQ 46 (257)
T ss_dssp CCCEEEECCSSCCHHHHHHHHHHHHHHHHT--TCCEEEEECCTT
T ss_pred CCEEEEEEeCCCCchHHHHHHHHHHHHHHC--CCCEEEEECCCC
Confidence 45788887 789999999999999887643 235666766543
No 490
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=91.07 E-value=0.13 Score=46.16 Aligned_cols=24 Identities=21% Similarity=0.297 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhh
Q 010355 171 HMIGAYGMAGVGKTMLVKEVARQA 194 (512)
Q Consensus 171 ~vi~I~G~gGiGKTtLa~~v~~~~ 194 (512)
--|+|+|.+|+|||||+..+....
T Consensus 28 ~ki~vvG~~~vGKSsL~~~l~~~~ 51 (214)
T 3q3j_B 28 CKLVLVGDVQCGKTAMLQVLAKDC 51 (214)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECcCCCCHHHHHHHHhcCC
Confidence 467899999999999999988753
No 491
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=91.05 E-value=0.12 Score=45.74 Aligned_cols=24 Identities=29% Similarity=0.339 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHh
Q 010355 170 VHMIGAYGMAGVGKTMLVKEVARQ 193 (512)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~v~~~ 193 (512)
..-|+|+|.+|+|||||+..+...
T Consensus 29 ~~ki~vvG~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 29 LFKLVLVGDASVGKTCVVQRFKTG 52 (201)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhhC
Confidence 456889999999999999998764
No 492
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=91.05 E-value=0.13 Score=48.03 Aligned_cols=24 Identities=21% Similarity=0.374 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHh
Q 010355 170 VHMIGAYGMAGVGKTMLVKEVARQ 193 (512)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~v~~~ 193 (512)
...|+|+|.+|+|||||...+...
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhCC
Confidence 357899999999999999998764
No 493
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=91.04 E-value=0.12 Score=50.25 Aligned_cols=24 Identities=25% Similarity=0.325 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhh
Q 010355 171 HMIGAYGMAGVGKTMLVKEVARQA 194 (512)
Q Consensus 171 ~vi~I~G~gGiGKTtLa~~v~~~~ 194 (512)
.+++|+|++|+|||||++.+....
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~g~~ 239 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALLGLQ 239 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHHCCS
T ss_pred CEEEEECCCCccHHHHHHHHhccc
Confidence 588999999999999999887543
No 494
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=91.04 E-value=0.12 Score=46.01 Aligned_cols=25 Identities=20% Similarity=0.137 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhh
Q 010355 170 VHMIGAYGMAGVGKTMLVKEVARQA 194 (512)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~v~~~~ 194 (512)
.--|+|+|.+|+|||||+..+....
T Consensus 9 ~~ki~i~G~~~~GKTsli~~l~~~~ 33 (212)
T 2j0v_A 9 FIKCVTVGDGAVGKTCMLICYTSNK 33 (212)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCC
Confidence 3468899999999999999988653
No 495
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=91.00 E-value=0.61 Score=43.16 Aligned_cols=46 Identities=15% Similarity=0.224 Sum_probs=33.1
Q ss_pred CCceEEEE-EcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCCCHHH
Q 010355 168 PDVHMIGA-YGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRPDVKK 216 (512)
Q Consensus 168 ~~~~vi~I-~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 216 (512)
...++|+| .|-||+||||+|..++.... +. ..++-|++....+...
T Consensus 25 ~~~~vI~v~s~kGGvGKTT~a~~LA~~la-~g--~~VlliD~D~~~~~~~ 71 (267)
T 3k9g_A 25 KKPKIITIASIKGGVGKSTSAIILATLLS-KN--NKVLLIDMDTQASITS 71 (267)
T ss_dssp -CCEEEEECCSSSSSCHHHHHHHHHHHHT-TT--SCEEEEEECTTCHHHH
T ss_pred CCCeEEEEEeCCCCchHHHHHHHHHHHHH-CC--CCEEEEECCCCCCHHH
Confidence 35677777 57899999999999998887 42 4577777766544433
No 496
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=91.00 E-value=0.47 Score=44.98 Aligned_cols=42 Identities=14% Similarity=0.254 Sum_probs=31.8
Q ss_pred CCCceEEEEEcC-CCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCC
Q 010355 167 NPDVHMIGAYGM-AGVGKTMLVKEVARQAKADKLFDEVVYAEVSQ 210 (512)
Q Consensus 167 ~~~~~vi~I~G~-gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~ 210 (512)
....++|+|+|. ||+||||+|..++...... -..++.|++..
T Consensus 101 ~~~~kvI~vts~kgG~GKTtva~nLA~~lA~~--G~rVLLID~D~ 143 (299)
T 3cio_A 101 ETENNILMITGATPDSGKTFVSSTLAAVIAQS--DQKVLFIDADL 143 (299)
T ss_dssp SCSCCEEEEEESSSSSCHHHHHHHHHHHHHHT--TCCEEEEECCT
T ss_pred CCCCeEEEEECCCCCCChHHHHHHHHHHHHhC--CCcEEEEECCC
Confidence 445689999885 8999999999999887643 34567777654
No 497
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=90.97 E-value=0.11 Score=45.25 Aligned_cols=34 Identities=26% Similarity=0.239 Sum_probs=24.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHhhhhcCCCCeEEEEEeCCCC
Q 010355 173 IGAYGMAGVGKTMLVKEVARQAKADKLFDEVVYAEVSQRP 212 (512)
Q Consensus 173 i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~ 212 (512)
+.|+|.+|+|||++|.+++.. . ..++++.-...+
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~-~-----~~~~yiaT~~~~ 35 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD-A-----PQVLYIATSQIL 35 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS-C-----SSEEEEECCCC-
T ss_pred EEEECCCCCcHHHHHHHHHhc-C-----CCeEEEecCCCC
Confidence 689999999999999998754 2 235566554433
No 498
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=90.96 E-value=0.12 Score=45.56 Aligned_cols=24 Identities=21% Similarity=0.268 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhh
Q 010355 171 HMIGAYGMAGVGKTMLVKEVARQA 194 (512)
Q Consensus 171 ~vi~I~G~gGiGKTtLa~~v~~~~ 194 (512)
.-|+|+|.+|+|||||+..+....
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~~~ 49 (201)
T 2gco_A 26 KKLVIVGDGACGKTCLLIVFSKDQ 49 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHhCc
Confidence 468899999999999999988753
No 499
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=90.95 E-value=0.12 Score=46.36 Aligned_cols=24 Identities=29% Similarity=0.257 Sum_probs=20.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHh
Q 010355 170 VHMIGAYGMAGVGKTMLVKEVARQ 193 (512)
Q Consensus 170 ~~vi~I~G~gGiGKTtLa~~v~~~ 193 (512)
.--|+|+|.+|+|||||+..+...
T Consensus 34 ~~ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 34 SVKVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHC-
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 456889999999999999998753
No 500
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=90.92 E-value=0.074 Score=46.04 Aligned_cols=21 Identities=29% Similarity=0.411 Sum_probs=0.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHh
Q 010355 173 IGAYGMAGVGKTMLVKEVARQ 193 (512)
Q Consensus 173 i~I~G~gGiGKTtLa~~v~~~ 193 (512)
|+|+|.+|+|||||+..+...
T Consensus 11 i~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 11 LLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEECCCCC------------
T ss_pred EEEECCCCCCHHHHHHHHHhC
Done!