BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010356
(512 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1BS2|A Chain A, Yeast Arginyl-Trna Synthetase
pdb|1F7U|A Chain A, Crystal Structure Of The Arginyl-trna Synthetase Complexed
With The Trna(arg) And L-arg
pdb|1F7V|A Chain A, Crystal Structure Of Yeast Arginyl-Trna Synthetase
Complexed With The Trnaarg
Length = 607
Score = 183 bits (464), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 150/500 (30%), Positives = 236/500 (47%), Gaps = 30/500 (6%)
Query: 24 KGPQPVGQAIM--KNLPPSEMIESCSVAGPGFVNVVLSKNWMAKNIQKMLVDGIETWAPK 81
KG P A+ + P + +E GP F+ + ++AK + ++ E +
Sbjct: 79 KGANPKDLAVQWAEKFPCGDFLEKVEANGP-FIQFFFNPQFLAKLVIPDILTRKEDYGSC 137
Query: 82 LRV--KKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFG 139
V KK +++FSSPNIAK H GHLRSTIIG LA + E EV+R N++GDWG QFG
Sbjct: 138 KLVENKKVIIEFSSPNIAKPFHAGHLRSTIIGGFLANLYEKLGWEVIRMNYLGDWGKQFG 197
Query: 140 MLIEYLFEKFPNSEDANETAIGELQEFYRRSKNRF----DSDP---AFKERAQQAVVRLQ 192
+L FE++ N E + I L + Y R DS P + +A++ R++
Sbjct: 198 LL-AVGFERYGNEEALVKDPIHHLFDVYVRINKDIEEEGDSIPLEQSTNGKAREYFKRME 256
Query: 193 SGEPKYHEAWAQICEISRKEFDKVYKRLRVDLE-EKGES-FYNPYIPGVIDELSKQGLVE 250
G+ + + W + E S +++ Y RL + + GES + ID ++GL
Sbjct: 257 DGDEEALKIWKRFREFSIEKYIDTYARLNIKYDVYSGESQVSKESMLKAIDLFKEKGLTH 316
Query: 251 ESQGARVIFIEGVNIPL---IIVKSDGGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQ 307
E +GA +I + N L I+ KSDG Y + D+ A R + + +IYV Q
Sbjct: 317 EDKGAVLIDLTKFNKKLGKAIVQKSDGTTLYLTRDVGAAMDRYEKYHFDKMIYVIASQQD 376
Query: 308 LHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAK 367
LH F K+ G+ A D HV FG+V G + TR VV L ++L+E K
Sbjct: 377 LHAAQFFEILKQMGFEWAKD-----LQHVNFGMVQG-----MSTRKGTVVFLDNILEETK 426
Query: 368 NRSKAVLIERGKDKXXXXXXXXXXXXXVGYGAAKYFDLKNNRLTNYTFSFDQMLNDKGNT 427
+ V+ ++ ++K VG A D++ R+ NY F +++ML+ +G+T
Sbjct: 427 EKMHEVM-KKNENKYAQIEHPEEVADLVGISAVMIQDMQGKRINNYEFKWERMLSFEGDT 485
Query: 428 AVYLLYAHARICSIIRKSGKDIEELKKTGSLVLDHADERALGLHLL-HFSEVIEEALTNL 486
YL YAH+R+ S+ R + +E L L + LL + +V+ A+
Sbjct: 486 GPYLQYAHSRLRSVERNASGITQEKWINADFSLLKEPAAKLLIRLLGQYPDVLRNAIKTH 545
Query: 487 LPNVVCEYLYNLSEYFTRFY 506
P V YL+ L+ + Y
Sbjct: 546 EPTTVVTYLFKLTHQVSSCY 565
>pdb|1IQ0|A Chain A, Thermus Thermophilus Arginyl-Trna Synthetase
Length = 592
Score = 112 bits (280), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 137/530 (25%), Positives = 234/530 (44%), Gaps = 80/530 (15%)
Query: 24 KGPQPVGQAIMKNLPPSEMIESCSVAGPGFVNVVLSKNWMAKNIQKMLVDGIETWAPKLR 83
K PQ + Q + LP E +E G G++N L + +L + + AP R
Sbjct: 49 KPPQAIAQELKDRLPLPEFVEEAVPVG-GYLNFRL-------RTEALLREALRPKAPFPR 100
Query: 84 VKKAV-VDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLI 142
V V+ +S N KE+HVGHLR+ +GD++AR+L ++ EVL N++ D G Q +
Sbjct: 101 RPGVVLVEHTSVNPNKELHVGHLRNIALGDAIARILAYAGREVLVLNYIDDTGRQAAETL 160
Query: 143 EYLFEKFPNSEDANETAIGELQEFYRRSKNRFDSDPAFKERAQQAVVR----LQSGEPKY 198
+ + + D E + F R+ R DP + ER Q A+ L+ GE +
Sbjct: 161 -FALRHYGLTWDGKE----KYDHFAGRAYVRLHQDPEY-ERLQPAIEEVLHALERGELRE 214
Query: 199 HEAWAQICEISRKE-FDKVYKRL-------RVDLEEKGESFY--NPYIPGVIDELSKQGL 248
+ +++ + Y L R L +K + +P++ + L
Sbjct: 215 EVNRILLAQMATMHALNARYDLLVWESDIVRAGLLQKALALLEQSPHVFRPREGKYAGAL 274
Query: 249 VEESQGARVIFIEGVNIPL-IIVKSDGGFNYASTDLAALWYRLN---------------- 291
V ++ I G+ P ++++S+G Y + D+A ++++
Sbjct: 275 VMDASP----VIPGLEDPFFVLLRSNGTATYYAKDIAFQFWKMGILEGLRFRPYENPYYP 330
Query: 292 ------------EEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFG 339
KAE I V DV Q +V +A AG+ + + KA H+ +
Sbjct: 331 GLRTSAPEGEAYTPKAEETINVVDVRQSHPQALVRAALALAGYPALAE----KAHHLAYE 386
Query: 340 LVLGEDGKRLRTRFSEVVRLVDLLDEAKNRSKAVLIERGKDKXXXXXXXXXXXXXVGYGA 399
VL E G+++ R V + ++L+EA R++A++ E+ D V GA
Sbjct: 387 TVLLE-GRQMSGRKGLAVSVDEVLEEATRRARAIVEEKNPDHPDKEEAARM----VALGA 441
Query: 400 AKYFDLKNNRLTNYTFSFDQMLNDKGNTAVYLLYAHARICSIIRKSGKDIEELKKTGSLV 459
++ +K F + + L+ +G+T Y+ YAHAR SI+RK+G + G+
Sbjct: 442 IRFSMVKTEPKKQIDFRYQEALSFEGDTGPYVQYAHARAHSILRKAG-------EWGAPD 494
Query: 460 LDHAD--ERALGLHLLHFSEVIEEALTNLLPNVVCEYLYNLSEYFTRFYS 507
L A ERAL L LL F E + EA P+V+ +YL +L+ + +Y+
Sbjct: 495 LSQATPYERALALDLLDFEEAVLEAAEERTPHVLAQYLLDLAASWNAYYN 544
>pdb|2ZUE|A Chain A, Crystal Structure Of Pyrococcus Horikoshii Arginyl-Trna
Synthetase Complexed With Trna(Arg) And An Atp Analog
(Anp)
pdb|2ZUF|A Chain A, Crystal Structure Of Pyrococcus Horikoshii Arginyl-Trna
Synthetase Complexed With Trna(Arg)
Length = 629
Score = 103 bits (257), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 127/529 (24%), Positives = 225/529 (42%), Gaps = 89/529 (16%)
Query: 52 GFVNVVLSKNWMAKN-IQKMLVDGIETWAPKL-RVKKAVVDFSSPNIAKEMHVGHLRSTI 109
G++NV + A+ I +L G + ++ + KK +V+ +S N K +H+GH R+ I
Sbjct: 84 GYINVFIDYPHFARILINDILAKGDRFGSSEIGKGKKVIVEHTSVNPTKPLHMGHARNAI 143
Query: 110 IGDSLARMLEFSNVEVLRRNHVGDWGTQFGML------IEYLFEKFPN-------SEDAN 156
+GD +AR+L F EV +N++ D G QF + ++ FE+ N ++
Sbjct: 144 LGDVMARILRFLGYEVEVQNYIDDLGIQFAQVYWGYLRLKEEFERIMNELRERGLKDNPI 203
Query: 157 ETAIGELQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKV 216
+ A+G L Y R + +P + + + +L+SGE Y A+ E+ R +
Sbjct: 204 DHALGLL---YVEVNRRLEDNPELENEIRDIMKKLESGE-LYGRKLAE--EVVRAQMVTT 257
Query: 217 YK--------------------RLRVDLEEKGESFYNPYIPGVIDELSKQGLVEESQGAR 256
YK + ++L K E+FY P D + V R
Sbjct: 258 YKLGVKYDLLVWESDIVRRKLFEIALELLSKNENFYIPS-----DGKYRGAFV---MDLR 309
Query: 257 VIFIEGVNIPLIIVKSDGGFNYASTDLAALWYRLNE----------EKAEWI-------- 298
+F + N L++ +SDG Y D+A ++ + + W
Sbjct: 310 KLFPDMKNPILVLRRSDGTATYTGKDIAYHLWKFGKIDVDLLYKEWDSTTWTTAPDGKSM 369
Query: 299 --------IYVTDVG-QQLHFDMVFS-AAKRAGWLSADDSTYPKASHVGFGLVLGEDGKR 348
I + +G +Q H + A + G+ A + Y H+ + V +GK
Sbjct: 370 PNKFGNANIVINVIGAEQKHPQLAIKYALQLLGFEDAAANLY----HLAYEHVERPEGKF 425
Query: 349 LRTRFSEVVRLVD-LLDEAKNRSKAVLIERGKDKXXXXXXXXXXXXXVGYGAAKYFDLKN 407
+ + V VD ++ EA R++ ++ E K+ VG GA +Y +K
Sbjct: 426 SGRKGTWVGFTVDEVIQEAVKRARELIEE--KNPALSDEEKAEVAEKVGIGAIRYNLIKY 483
Query: 408 NRLTNYTFSFDQMLNDKGNTAVYLLYAHARICSIIRKSGK-----DIEELKKTGSLVLDH 462
+ F ++ +LN +G +A Y+ YAHAR SI+RK+ + D E L K
Sbjct: 484 SPDKKIIFRWEDVLNFEGESAPYIQYAHARCSSILRKAEEEGIKVDPETLFKNADFTKLS 543
Query: 463 ADERALGLHLLHFSEVIEEALTNLLPNVVCEYLYNLSEYFTRFYSNCQV 511
ER L + L F ++E+A ++ P+++ + L+ F +FY + V
Sbjct: 544 ERERELVIMLSKFPRIVEQAGKDVKPHLIAWFANELASLFNKFYMDHPV 592
>pdb|3FNR|A Chain A, Crystal Structure Of Putative Arginyl T-Rna Synthetase
From Campylobacter Jejuni
Length = 464
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 54/118 (45%), Gaps = 2/118 (1%)
Query: 395 VGYGAAKYFDLKNNRLTNYTFSF-DQMLNDKGNTAVYLLYAHARICSIIRKSGKDIEELK 453
+G A +Y L T+ F D D N Y+ YAHARI + K+GK I+++
Sbjct: 303 IGSDALRYIFLSKKCDTHLEFDISDLQKEDSSNPVYYINYAHARIHQVFAKAGKKIDDVM 362
Query: 454 KTGSLVLDHADERALGLHLLHFSEVIEEALTNLLPNVVCEYLYNLSEYFTRFYSNCQV 511
K L+ D L L+ V+ +A + +YL NL+ F +FY+ +V
Sbjct: 363 KADLQSLNQ-DGVNLLFEALNLKAVLNDAFEARALQKIPDYLKNLAANFHKFYNENKV 419
Score = 35.4 bits (80), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 19/84 (22%), Positives = 40/84 (47%)
Query: 58 LSKNWMAKNIQKMLVDGIETWAPKLRVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARM 117
LSK ++ + + L + + + + + ++++ S N +H+GH R + GD+L R+
Sbjct: 3 LSKTFLNELANQALTNPNDFTKGEKKQESFLLEYVSANPTGPLHIGHARGAVFGDTLTRL 62
Query: 118 LEFSNVEVLRRNHVGDWGTQFGML 141
+ +V D G Q +L
Sbjct: 63 ARHLGYKFNTEYYVNDAGNQIYLL 86
>pdb|3GDZ|A Chain A, Crystal Structure Of Arginyl-Trna Synthetase From
Klebsiella Pneumoniae Subsp. Pneumoniae
pdb|3GDZ|B Chain B, Crystal Structure Of Arginyl-Trna Synthetase From
Klebsiella Pneumoniae Subsp. Pneumoniae
pdb|3GDZ|C Chain C, Crystal Structure Of Arginyl-Trna Synthetase From
Klebsiella Pneumoniae Subsp. Pneumoniae
pdb|3GDZ|D Chain D, Crystal Structure Of Arginyl-Trna Synthetase From
Klebsiella Pneumoniae Subsp. Pneumoniae
Length = 109
Score = 34.7 bits (78), Expect = 0.15, Method: Composition-based stats.
Identities = 12/47 (25%), Positives = 27/47 (57%)
Query: 25 GPQPVGQAIMKNLPPSEMIESCSVAGPGFVNVVLSKNWMAKNIQKML 71
P+ + + ++ +L + + +AGPGF+N+ L ++A N+ + L
Sbjct: 57 APRQLAEQVLSHLDLNGIANKVEIAGPGFINIFLDPAFLADNVNRAL 103
>pdb|1OBH|A Chain A, Leucyl-Trna Synthetase From Thermus Thermophilus Complexed
With A Pre-Transfer Editing Substrate Analogue In Both
Synthetic Active Site And Editing Site
pdb|2BTE|A Chain A, Thermus Thermophilus Leucyl-Trna Synthetase Complexed With
With A Trnaleu Transcript In The Post-Editing
Conformation And A Post-Transfer Editing Substrate
Analogue
pdb|2BTE|D Chain D, Thermus Thermophilus Leucyl-Trna Synthetase Complexed With
With A Trnaleu Transcript In The Post-Editing
Conformation And A Post-Transfer Editing Substrate
Analogue
pdb|2BYT|A Chain A, Thermus Thermophilus Leucyl-Trna Synthetase Complexed With
A Trnaleu Transcript In The Post-Editing Conformation
pdb|2BYT|D Chain D, Thermus Thermophilus Leucyl-Trna Synthetase Complexed With
A Trnaleu Transcript In The Post-Editing Conformation
pdb|1H3N|A Chain A, Leucyl-Trna Synthetase From Thermus Thermophilus Complexed
With A Sulphamoyl Analogue Of Leucyl-Adenylate
pdb|1OBC|A Chain A, Leucyl-Trna Synthetase From Thermus Thermophilus Complexed
With A Post-Transfer Editing Substrate Analogue
pdb|2V0G|A Chain A, Leucyl-Trna Synthetase From Thermus Thermophilus Complexed
With A Trna(Leu) Transcript With 5-Fluoro-1,3-Dihydro-1-
Hydroxy-2,1-Benzoxaborole (An2690) Forming An Adduct To
The Ribose Of Adenosine-76 In The Enzyme Editing Site.
pdb|2V0G|D Chain D, Leucyl-Trna Synthetase From Thermus Thermophilus Complexed
With A Trna(Leu) Transcript With 5-Fluoro-1,3-Dihydro-1-
Hydroxy-2,1-Benzoxaborole (An2690) Forming An Adduct To
The Ribose Of Adenosine-76 In The Enzyme Editing Site
Length = 878
Score = 32.7 bits (73), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 4/56 (7%)
Query: 94 PNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKF 149
P + ++H+GHL++ +GD LAR EVL H W FG+ E KF
Sbjct: 42 PYPSGDLHMGHLKNYTMGDVLARFRRMQGYEVL---HPMGWDA-FGLPAENAALKF 93
>pdb|2V0C|A Chain A, Leucyl-Trna Synthetase From Thermus Thermophilus Complexed
With A Sulphamoyl Analogue Of Leucyl-Adenylate In The
Synthetic Site And An Adduct Of Amp With 5-Fluoro-1,3-
Dihydro-1-Hydroxy-2,1-Benzoxaborole (An2690) In The
Editing Site
Length = 878
Score = 32.7 bits (73), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 4/56 (7%)
Query: 94 PNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKF 149
P + ++H+GHL++ +GD LAR EVL H W FG+ E KF
Sbjct: 42 PYPSGDLHMGHLKNYTMGDVLARFRRMQGYEVL---HPMGWDA-FGLPAENAALKF 93
>pdb|3EZS|A Chain A, Crystal Structure Of Aminotransferase Aspb (Np_207418.1)
From Helicobacter Pylori 26695 At 2.19 A Resolution
pdb|3EZS|B Chain B, Crystal Structure Of Aminotransferase Aspb (Np_207418.1)
From Helicobacter Pylori 26695 At 2.19 A Resolution
Length = 376
Score = 32.3 bits (72), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 5/68 (7%)
Query: 33 IMKNLPPSEMIESCSVAG-PGFVNVV----LSKNWMAKNIQKMLVDGIETWAPKLRVKKA 87
I +N PP ++E+C +AG F NV+ LSK A ++ + G K + +A
Sbjct: 199 IYENTPPPSLLEACXLAGNEAFKNVLVIHSLSKRSSAPGLRSGFIAGDSRLLEKYKAFRA 258
Query: 88 VVDFSSPN 95
+ ++S N
Sbjct: 259 YLGYTSAN 266
>pdb|1WKB|A Chain A, Crystal Structure Of Leucyl-Trna Synthetase From The
Archaeon Pyrococcus Horikoshii Reveals A Novel Editing
Domain Orientation
Length = 810
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 23/46 (50%)
Query: 81 KLRVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVL 126
K + KK + + P ++ +HVGH R+ I D +AR VL
Sbjct: 30 KPKEKKFYITVAFPYLSGHLHVGHARTYTIPDVIARFKRMQGYNVL 75
>pdb|1WZ2|A Chain A, The Crystal Structure Of Leucyl-Trna Synthetase And
Trna(Leucine) Complex
pdb|1WZ2|B Chain B, The Crystal Structure Of Leucyl-Trna Synthetase And
Trna(Leucine) Complex
Length = 967
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 23/46 (50%)
Query: 81 KLRVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVL 126
K + KK + + P ++ +HVGH R+ I D +AR VL
Sbjct: 30 KPKEKKFYITVAFPYLSGHLHVGHARTYTIPDVIARFKRMQGYNVL 75
>pdb|3MG2|A Chain A, Crystal Structure Of The Orange Carotenoid Protein Y44s
Mutant From Cyanobacteria Synechocystis Sp. Pcc 6803
pdb|3MG2|B Chain B, Crystal Structure Of The Orange Carotenoid Protein Y44s
Mutant From Cyanobacteria Synechocystis Sp. Pcc 6803
Length = 323
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 26/64 (40%)
Query: 286 LWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGED 345
WYRL E + + G QL + A G S T + + V G G+D
Sbjct: 109 FWYRLGELMEQGFVAPIPAGYQLSANANAVLATIQGLESGQQITVLRNAVVDMGFTAGKD 168
Query: 346 GKRL 349
GKR+
Sbjct: 169 GKRI 172
>pdb|3MG1|A Chain A, Crystal Structure Of The Orange Carotenoid Protein From
Cyanobacteria Synechocystis Sp. Pcc 6803
pdb|3MG1|B Chain B, Crystal Structure Of The Orange Carotenoid Protein From
Cyanobacteria Synechocystis Sp. Pcc 6803
Length = 323
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 26/64 (40%)
Query: 286 LWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGED 345
WYRL E + + G QL + A G S T + + V G G+D
Sbjct: 109 FWYRLGELMEQGFVAPIPAGYQLSANANAVLATIQGLESGQQITVLRNAVVDMGFTAGKD 168
Query: 346 GKRL 349
GKR+
Sbjct: 169 GKRI 172
>pdb|3SP1|A Chain A, Crystal Structure Of Cysteinyl-Trna Synthetase (Cyss) From
Borrelia Burgdorferi
pdb|3SP1|B Chain B, Crystal Structure Of Cysteinyl-Trna Synthetase (Cyss) From
Borrelia Burgdorferi
Length = 501
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 23/48 (47%)
Query: 94 PNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGML 141
P + H+G+ R+ I GD L + L F +V ++ D G G L
Sbjct: 50 PTVYNYAHIGNFRTYIFGDLLIKTLRFLGYKVNYAMNITDIGHLTGDL 97
>pdb|3MG3|A Chain A, Crystal Structure Of The Orange Carotenoid Protein R155l
Mutant From Cyanobacteria Synechocystis Sp. Pcc 6803
pdb|3MG3|B Chain B, Crystal Structure Of The Orange Carotenoid Protein R155l
Mutant From Cyanobacteria Synechocystis Sp. Pcc 6803
Length = 323
Score = 28.9 bits (63), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 25/64 (39%)
Query: 286 LWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGED 345
WYRL E + + G QL + A G S T + V G G+D
Sbjct: 109 FWYRLGELMEQGFVAPIPAGYQLSANANAVLATIQGLESGQQITVLLNAVVDMGFTAGKD 168
Query: 346 GKRL 349
GKR+
Sbjct: 169 GKRI 172
>pdb|2VDJ|A Chain A, Crystal Structure Of Homoserine O-acetyltransferase (meta)
From Bacillus Cereus With Homoserine
Length = 301
Score = 28.9 bits (63), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 112 DSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSE 153
+ L R++E+S V H+ WG Q G+ Y +K+P E
Sbjct: 122 EELKRIMEYSKTNVTSTLHIC-WGAQAGLYHHYGVQKYPLKE 162
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,199,782
Number of Sequences: 62578
Number of extensions: 639297
Number of successful extensions: 1695
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1671
Number of HSP's gapped (non-prelim): 23
length of query: 512
length of database: 14,973,337
effective HSP length: 103
effective length of query: 409
effective length of database: 8,527,803
effective search space: 3487871427
effective search space used: 3487871427
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)