Query 010356
Match_columns 512
No_of_seqs 261 out of 2139
Neff 7.8
Searched_HMMs 46136
Date Thu Mar 28 23:34:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010356.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010356hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02286 arginine-tRNA ligase 100.0 2E-117 4E-122 960.9 55.4 506 5-512 37-542 (576)
2 COG0018 ArgS Arginyl-tRNA synt 100.0 7E-115 1E-119 928.6 51.1 488 5-512 41-540 (577)
3 PRK12451 arginyl-tRNA syntheta 100.0 4E-108 9E-113 887.5 52.3 484 5-512 40-527 (562)
4 KOG4426 Arginyl-tRNA synthetas 100.0 1E-106 3E-111 798.1 44.2 501 5-512 111-615 (656)
5 TIGR00456 argS arginyl-tRNA sy 100.0 4E-101 8E-106 836.2 53.4 484 5-512 38-529 (566)
6 PRK01611 argS arginyl-tRNA syn 100.0 4.3E-92 9.3E-97 757.4 46.6 421 5-510 42-469 (507)
7 KOG1195 Arginyl-tRNA synthetas 100.0 1.4E-87 3E-92 677.9 37.4 476 24-512 48-531 (567)
8 PF00750 tRNA-synt_1d: tRNA sy 100.0 5.9E-75 1.3E-79 597.2 24.8 340 67-417 2-354 (354)
9 cd00671 ArgRS_core catalytic c 100.0 1.6E-53 3.5E-58 409.0 24.1 209 86-354 1-212 (212)
10 PTZ00399 cysteinyl-tRNA-synthe 100.0 3.1E-39 6.7E-44 353.0 27.4 327 82-507 56-437 (651)
11 PLN02946 cysteine-tRNA ligase 100.0 1.6E-38 3.5E-43 337.8 25.9 323 83-506 77-442 (557)
12 COG0215 CysS Cysteinyl-tRNA sy 100.0 8.4E-38 1.8E-42 320.9 23.5 267 83-445 19-328 (464)
13 PRK00260 cysS cysteinyl-tRNA s 100.0 1.6E-36 3.4E-41 322.6 25.2 314 83-508 20-376 (463)
14 PRK14536 cysS cysteinyl-tRNA s 100.0 9.3E-36 2E-40 313.8 24.7 338 83-504 20-404 (490)
15 PRK14534 cysS cysteinyl-tRNA s 100.0 2.1E-35 4.7E-40 309.5 25.5 261 85-424 20-327 (481)
16 PRK14535 cysS cysteinyl-tRNA s 100.0 9.1E-35 2E-39 310.6 25.2 313 83-504 245-612 (699)
17 PF01406 tRNA-synt_1e: tRNA sy 100.0 1.2E-35 2.5E-40 291.5 15.4 249 82-422 4-297 (300)
18 TIGR00435 cysS cysteinyl-tRNA 100.0 1.6E-34 3.5E-39 306.5 25.1 252 83-424 18-312 (465)
19 PRK12418 cysteinyl-tRNA synthe 100.0 4.6E-34 9.9E-39 293.0 24.0 305 84-506 7-362 (384)
20 PRK11893 methionyl-tRNA synthe 100.0 3.8E-33 8.3E-38 302.2 28.7 329 85-510 1-429 (511)
21 TIGR03447 mycothiol_MshC cyste 100.0 1.7E-33 3.6E-38 290.0 22.3 252 84-423 34-335 (411)
22 TIGR00398 metG methionyl-tRNA 100.0 2.4E-32 5.2E-37 296.9 30.1 328 88-510 2-457 (530)
23 COG0143 MetG Methionyl-tRNA sy 100.0 2.1E-31 4.6E-36 283.6 29.3 338 84-509 4-463 (558)
24 PRK00133 metG methionyl-tRNA s 100.0 1.1E-30 2.3E-35 290.2 29.1 327 85-510 2-456 (673)
25 PLN02224 methionine-tRNA ligas 100.0 2.1E-29 4.6E-34 273.8 28.6 330 82-509 66-495 (616)
26 PRK12268 methionyl-tRNA synthe 100.0 1.4E-29 3.1E-34 276.7 26.8 332 85-510 3-463 (556)
27 KOG2007 Cysteinyl-tRNA synthet 100.0 7.1E-30 1.5E-34 258.8 19.6 329 82-508 51-426 (586)
28 PRK12267 methionyl-tRNA synthe 100.0 5.8E-29 1.3E-33 275.8 28.8 327 85-510 4-429 (648)
29 PLN02610 probable methionyl-tR 100.0 3.4E-27 7.4E-32 263.7 28.4 335 84-510 16-485 (801)
30 cd00668 Ile_Leu_Val_MetRS_core 99.9 1E-26 2.2E-31 236.5 21.8 253 86-415 1-312 (312)
31 cd00672 CysRS_core catalytic c 99.9 1.2E-26 2.6E-31 221.8 16.8 192 83-416 17-213 (213)
32 cd00812 LeuRS_core catalytic c 99.9 1.8E-26 3.9E-31 234.4 17.4 242 86-417 1-314 (314)
33 cd00814 MetRS_core catalytic c 99.9 7.3E-26 1.6E-30 230.7 20.0 240 86-415 1-319 (319)
34 cd00674 LysRS_core_class_I cat 99.9 7.4E-25 1.6E-29 223.0 22.0 258 85-420 19-319 (353)
35 cd00818 IleRS_core catalytic c 99.9 1.5E-24 3.4E-29 222.3 20.6 256 86-415 2-338 (338)
36 cd00817 ValRS_core catalytic c 99.9 4E-24 8.7E-29 222.7 21.4 133 86-255 2-139 (382)
37 PRK13208 valS valyl-tRNA synth 99.9 4.2E-23 9E-28 234.0 30.7 155 58-252 10-170 (800)
38 KOG0436 Methionyl-tRNA synthet 99.9 1.3E-23 2.7E-28 209.1 21.2 316 95-508 49-475 (578)
39 PRK05729 valS valyl-tRNA synth 99.9 1.6E-22 3.4E-27 230.9 30.2 136 335-506 507-645 (874)
40 PF09334 tRNA-synt_1g: tRNA sy 99.9 9.4E-24 2E-28 219.9 16.7 262 87-438 1-390 (391)
41 TIGR00422 valS valyl-tRNA synt 99.9 4.4E-22 9.6E-27 227.3 31.2 156 59-251 6-167 (861)
42 cd00802 class_I_aaRS_core cata 99.9 1.6E-22 3.5E-27 182.3 13.8 143 89-353 1-143 (143)
43 COG0525 ValS Valyl-tRNA synthe 99.9 1.6E-20 3.4E-25 206.3 31.5 137 328-506 508-649 (877)
44 TIGR00464 gltX_bact glutamyl-t 99.9 2.8E-22 6.1E-27 212.8 17.3 140 265-425 172-313 (470)
45 PRK00750 lysK lysyl-tRNA synth 99.9 3.1E-21 6.6E-26 207.0 23.5 255 86-417 24-321 (510)
46 PRK06039 ileS isoleucyl-tRNA s 99.9 2.5E-20 5.4E-25 214.5 32.0 132 84-251 40-176 (975)
47 TIGR00392 ileS isoleucyl-tRNA 99.9 1.6E-20 3.5E-25 214.7 29.3 138 336-506 599-739 (861)
48 PRK14900 valS valyl-tRNA synth 99.9 3.8E-20 8.2E-25 213.5 30.8 158 58-251 19-183 (1052)
49 PRK01406 gltX glutamyl-tRNA sy 99.9 1.8E-21 3.9E-26 206.8 15.6 136 265-425 182-322 (476)
50 cd07956 Anticodon_Ia_Arg Antic 99.9 5.5E-22 1.2E-26 181.4 10.0 118 395-512 3-120 (156)
51 PLN02943 aminoacyl-tRNA ligase 99.8 6E-19 1.3E-23 202.2 30.6 132 83-251 86-222 (958)
52 PRK05743 ileS isoleucyl-tRNA s 99.8 4.3E-19 9.3E-24 202.9 28.9 128 84-251 48-180 (912)
53 PRK14895 gltX glutamyl-tRNA sy 99.8 4.6E-20 1E-24 194.7 17.6 241 91-425 8-311 (513)
54 TIGR00467 lysS_arch lysyl-tRNA 99.8 2.7E-19 5.8E-24 190.8 20.7 254 86-420 19-317 (515)
55 PLN02843 isoleucyl-tRNA synthe 99.8 4.1E-18 8.8E-23 195.5 30.4 129 84-251 31-164 (974)
56 PRK13804 ileS isoleucyl-tRNA s 99.8 4.2E-18 9.1E-23 195.3 30.0 136 337-506 619-755 (961)
57 PRK12558 glutamyl-tRNA synthet 99.8 6E-20 1.3E-24 191.8 13.6 241 91-425 6-311 (445)
58 PTZ00419 valyl-tRNA synthetase 99.8 9.3E-18 2E-22 194.1 30.7 133 83-251 58-195 (995)
59 TIGR00395 leuS_arch leucyl-tRN 99.8 1.7E-17 3.8E-22 190.3 32.4 139 84-251 24-167 (938)
60 PLN02882 aminoacyl-tRNA ligase 99.8 1.8E-17 3.9E-22 192.4 32.1 132 84-251 37-173 (1159)
61 TIGR00396 leuS_bact leucyl-tRN 99.8 5.2E-18 1.1E-22 192.2 26.5 120 348-505 604-725 (842)
62 PLN02381 valyl-tRNA synthetase 99.8 1.7E-17 3.7E-22 191.4 30.6 157 59-251 101-263 (1066)
63 PRK00390 leuS leucyl-tRNA synt 99.8 2.3E-17 4.9E-22 186.6 27.6 125 332-506 562-687 (805)
64 PTZ00427 isoleucine-tRNA ligas 99.8 2.9E-16 6.3E-21 181.9 32.8 157 59-251 73-237 (1205)
65 COG0495 LeuS Leucyl-tRNA synth 99.8 1.1E-16 2.4E-21 176.7 27.8 114 85-251 34-152 (814)
66 PLN02563 aminoacyl-tRNA ligase 99.7 2.1E-16 4.5E-21 180.0 26.3 140 59-251 81-229 (963)
67 PLN02627 glutamyl-tRNA synthet 99.7 4.5E-18 9.8E-23 179.9 11.3 247 85-425 44-365 (535)
68 PRK12410 glutamylglutaminyl-tR 99.7 2.3E-17 5E-22 171.7 14.6 239 93-425 5-305 (433)
69 PF00133 tRNA-synt_1: tRNA syn 99.7 4E-17 8.7E-22 179.6 17.3 133 83-251 21-158 (601)
70 COG0060 IleS Isoleucyl-tRNA sy 99.7 5.6E-16 1.2E-20 172.6 23.6 131 337-506 591-727 (933)
71 cd00808 GluRS_core catalytic c 99.7 1E-16 2.2E-21 155.1 14.1 216 91-424 5-233 (239)
72 PRK04156 gltX glutamyl-tRNA sy 99.7 1.3E-16 2.8E-21 170.8 14.0 231 84-424 99-402 (567)
73 cd09287 GluRS_non_core catalyt 99.7 1.6E-16 3.4E-21 153.1 11.2 209 90-423 4-229 (240)
74 PF01921 tRNA-synt_1f: tRNA sy 99.7 9E-17 2E-21 162.2 9.9 260 84-420 22-326 (360)
75 PF00749 tRNA-synt_1c: tRNA sy 99.7 8.9E-16 1.9E-20 155.5 15.7 240 91-421 5-313 (314)
76 cd00418 GlxRS_core catalytic c 99.7 4.5E-16 9.7E-21 149.4 12.5 217 91-425 5-225 (230)
77 COG1384 LysS Lysyl-tRNA synthe 99.6 6.1E-15 1.3E-19 152.8 17.8 265 85-422 19-323 (521)
78 COG0008 GlnS Glutamyl- and glu 99.6 3.7E-15 8E-20 156.9 15.0 246 88-425 10-323 (472)
79 TIGR03838 queuosine_YadB gluta 99.6 1.6E-14 3.5E-19 142.4 12.5 185 92-362 5-242 (272)
80 PF05746 DALR_1: DALR anticodo 99.6 4.9E-15 1.1E-19 129.0 6.8 82 431-512 1-82 (119)
81 PRK05710 glutamyl-Q tRNA(Asp) 99.5 6.5E-14 1.4E-18 139.6 13.8 186 90-361 8-248 (299)
82 KOG0432 Valyl-tRNA synthetase 99.5 5.7E-12 1.2E-16 136.5 27.0 136 83-254 73-213 (995)
83 KOG1247 Methionyl-tRNA synthet 99.5 2.1E-13 4.5E-18 136.4 14.2 335 82-509 11-472 (567)
84 KOG1149 Glutamyl-tRNA syntheta 99.4 7.7E-13 1.7E-17 133.3 12.6 150 254-425 201-353 (524)
85 PLN03233 putative glutamate-tR 99.4 6.3E-13 1.4E-17 141.0 12.7 234 85-423 10-309 (523)
86 PTZ00402 glutamyl-tRNA synthet 99.4 1.5E-12 3.3E-17 139.5 14.1 233 85-425 51-353 (601)
87 TIGR00463 gltX_arch glutamyl-t 99.4 1E-12 2.3E-17 140.8 12.1 239 85-423 92-392 (560)
88 cd00807 GlnRS_core catalytic c 99.4 1E-12 2.2E-17 126.5 10.2 218 91-424 5-228 (238)
89 smart00836 DALR_1 DALR anticod 99.4 1.1E-12 2.4E-17 114.7 7.6 82 431-512 1-85 (122)
90 PLN02907 glutamate-tRNA ligase 99.4 3.8E-12 8.3E-17 141.3 12.6 237 88-424 214-512 (722)
91 PRK05347 glutaminyl-tRNA synth 99.3 2.2E-11 4.7E-16 129.8 17.1 117 265-423 189-333 (554)
92 PF03485 Arg_tRNA_synt_N: Argi 99.3 1.2E-12 2.6E-17 107.1 5.3 48 5-58 38-85 (85)
93 TIGR00440 glnS glutaminyl-tRNA 99.3 9.7E-11 2.1E-15 124.6 15.9 122 283-420 187-325 (522)
94 PRK12300 leuS leucyl-tRNA synt 99.3 5.7E-11 1.2E-15 136.3 15.2 162 299-509 533-696 (897)
95 KOG0433 Isoleucyl-tRNA synthet 99.2 1.7E-09 3.8E-14 115.4 23.2 171 302-507 572-745 (937)
96 PRK14703 glutaminyl-tRNA synth 99.2 2.8E-10 6.1E-15 126.3 16.5 247 59-423 12-336 (771)
97 PLN02859 glutamine-tRNA ligase 99.2 1.8E-10 4E-15 126.6 13.2 107 278-424 441-564 (788)
98 PLN02959 aminoacyl-tRNA ligase 99.0 4.3E-09 9.3E-14 122.7 15.4 166 85-251 45-239 (1084)
99 KOG0435 Leucyl-tRNA synthetase 99.0 5E-10 1.1E-14 118.5 6.5 115 83-251 56-175 (876)
100 PTZ00437 glutaminyl-tRNA synth 98.9 1E-08 2.3E-13 109.4 13.7 40 85-127 50-89 (574)
101 PLN02959 aminoacyl-tRNA ligase 98.8 5.9E-08 1.3E-12 113.3 15.6 146 299-494 674-825 (1084)
102 KOG0434 Isoleucyl-tRNA synthet 98.8 7.1E-07 1.5E-11 95.1 20.6 134 337-506 590-733 (1070)
103 PRK12300 leuS leucyl-tRNA synt 98.7 5.3E-08 1.2E-12 112.1 9.4 124 100-252 1-129 (897)
104 PRK13354 tyrosyl-tRNA syntheta 97.5 0.00026 5.7E-09 74.6 8.6 61 292-362 184-244 (410)
105 KOG1147 Glutamyl-tRNA syntheta 97.5 0.00066 1.4E-08 71.3 10.4 42 211-252 253-295 (712)
106 PRK05912 tyrosyl-tRNA syntheta 97.5 0.00033 7E-09 73.9 8.1 60 292-361 186-245 (408)
107 TIGR00233 trpS tryptophanyl-tR 97.4 0.0018 4E-08 66.3 12.2 67 293-361 138-206 (328)
108 PTZ00126 tyrosyl-tRNA syntheta 97.3 0.0031 6.8E-08 65.8 13.2 60 293-361 209-271 (383)
109 PRK12285 tryptophanyl-tRNA syn 97.3 0.0026 5.6E-08 66.1 12.3 56 299-362 206-266 (368)
110 cd00806 TrpRS_core catalytic c 97.3 0.0047 1E-07 61.9 13.3 67 293-361 136-205 (280)
111 PRK08560 tyrosyl-tRNA syntheta 97.3 0.0019 4.2E-08 66.2 10.7 63 293-365 167-232 (329)
112 cd00395 Tyr_Trp_RS_core cataly 97.1 0.0044 9.5E-08 61.9 11.6 64 293-365 152-215 (273)
113 KOG0437 Leucyl-tRNA synthetase 97.0 0.0036 7.8E-08 68.2 9.8 165 83-250 42-232 (1080)
114 PLN02486 aminoacyl-tRNA ligase 96.9 0.074 1.6E-06 55.5 18.9 53 301-361 224-279 (383)
115 COG0162 TyrS Tyrosyl-tRNA synt 96.8 0.002 4.4E-08 67.2 5.8 51 299-357 183-233 (401)
116 TIGR00234 tyrS tyrosyl-tRNA sy 96.7 0.015 3.2E-07 60.8 11.2 58 294-361 177-234 (377)
117 KOG0435 Leucyl-tRNA synthetase 96.5 0.012 2.5E-07 63.9 9.5 123 348-506 617-743 (876)
118 PTZ00348 tyrosyl-tRNA syntheta 95.9 0.041 8.9E-07 61.3 10.0 61 293-362 174-237 (682)
119 cd07375 Anticodon_Ia_like Anti 95.3 0.097 2.1E-06 44.1 8.1 76 431-509 10-85 (117)
120 COG0180 TrpS Tryptophanyl-tRNA 95.0 0.061 1.3E-06 54.4 6.9 62 301-362 150-213 (314)
121 cd00805 TyrRS_core catalytic c 94.5 0.027 6E-07 56.1 3.2 52 299-358 154-205 (269)
122 KOG0437 Leucyl-tRNA synthetase 94.4 0.14 3.1E-06 56.3 8.3 61 328-420 693-754 (1080)
123 PRK12556 tryptophanyl-tRNA syn 94.1 0.041 8.9E-07 56.5 3.3 65 293-361 148-215 (332)
124 PRK12284 tryptophanyl-tRNA syn 93.6 0.08 1.7E-06 55.7 4.5 67 293-361 147-215 (431)
125 PF00579 tRNA-synt_1b: tRNA sy 92.7 0.086 1.9E-06 53.2 3.0 67 293-365 148-216 (292)
126 cd07957 Anticodon_Ia_Met Antic 91.4 1.3 2.8E-05 38.1 8.7 73 432-509 10-82 (129)
127 PRK00927 tryptophanyl-tRNA syn 91.3 0.23 5E-06 51.1 4.3 68 293-362 137-210 (333)
128 cd07958 Anticodon_Ia_Leu_BEm A 89.7 2.4 5.1E-05 35.7 8.7 73 434-509 12-84 (117)
129 PRK12282 tryptophanyl-tRNA syn 89.6 0.37 8E-06 49.5 4.1 65 293-361 141-209 (333)
130 PRK01233 glyS glycyl-tRNA synt 88.4 2.6 5.6E-05 47.4 9.9 83 427-511 567-649 (682)
131 PRK12283 tryptophanyl-tRNA syn 88.1 0.48 1E-05 49.5 3.7 37 91-134 6-43 (398)
132 cd07959 Anticodon_Ia_Leu_AEc A 86.1 4.2 9E-05 34.3 8.0 69 435-509 13-82 (117)
133 TIGR00211 glyS glycyl-tRNA syn 85.4 5.5 0.00012 45.0 10.4 82 428-511 578-659 (691)
134 KOG1148 Glutaminyl-tRNA synthe 83.4 1.7 3.6E-05 47.1 4.9 60 84-144 246-333 (764)
135 PLN02886 aminoacyl-tRNA ligase 78.1 2.8 6E-05 43.9 4.4 38 91-134 50-87 (389)
136 PRK14908 glycyl-tRNA synthetas 77.0 13 0.00029 43.5 9.8 77 428-511 893-969 (1000)
137 COG0751 GlyS Glycyl-tRNA synth 75.7 16 0.00034 40.9 9.5 82 428-511 577-658 (691)
138 cd07962 Anticodon_Ia_Val Antic 71.8 9.7 0.00021 33.3 5.8 48 462-509 41-90 (135)
139 cd00805 TyrRS_core catalytic c 71.6 3.4 7.5E-05 41.1 3.1 38 91-134 4-42 (269)
140 PF00579 tRNA-synt_1b: tRNA sy 71.5 3.3 7.1E-05 41.7 3.0 43 85-134 4-46 (292)
141 cd07960 Anticodon_Ia_Ile_BEm A 56.5 28 0.00061 32.0 6.0 47 462-508 43-91 (180)
142 cd07961 Anticodon_Ia_Ile_ABEc 53.4 31 0.00066 31.9 5.7 45 462-506 46-90 (183)
143 PRK12284 tryptophanyl-tRNA syn 52.0 15 0.00033 39.0 3.7 40 91-134 6-45 (431)
144 PLN02886 aminoacyl-tRNA ligase 46.0 14 0.0003 38.8 2.3 28 293-322 183-210 (389)
145 COG1656 Uncharacterized conser 45.6 15 0.00033 33.5 2.2 21 113-133 17-37 (165)
146 cd01134 V_A-ATPase_A V/A-type 45.1 3E+02 0.0064 28.8 11.6 104 58-171 193-302 (369)
147 PRK12282 tryptophanyl-tRNA syn 42.0 24 0.00052 36.3 3.3 38 91-134 6-43 (333)
148 PF01927 Mut7-C: Mut7-C RNAse 40.7 21 0.00046 32.0 2.4 21 113-133 11-31 (147)
149 PRK00927 tryptophanyl-tRNA syn 39.1 24 0.00052 36.3 2.8 39 91-135 5-43 (333)
150 PF08373 RAP: RAP domain; Int 39.1 24 0.00052 25.9 2.1 21 111-131 18-40 (58)
151 KOG2623 Tyrosyl-tRNA synthetas 35.5 70 0.0015 33.4 5.3 57 297-360 228-285 (467)
152 COG1832 Predicted CoA-binding 33.6 60 0.0013 28.9 3.9 36 84-130 16-51 (140)
153 TIGR02855 spore_yabG sporulati 32.5 2.6E+02 0.0056 27.9 8.5 63 294-365 197-260 (283)
154 PF15540 Toxin_62: Putative to 32.4 40 0.00086 28.3 2.4 16 80-95 47-62 (113)
155 PRK12556 tryptophanyl-tRNA syn 32.2 33 0.00072 35.3 2.5 40 91-134 7-46 (332)
156 KOG2713 Mitochondrial tryptoph 30.5 18 0.00038 36.1 0.1 56 293-355 154-218 (347)
157 PF03464 eRF1_2: eRF1 domain 2 29.7 1.5E+02 0.0033 25.8 6.0 28 27-54 57-85 (133)
158 cd02156 nt_trans nucleotidyl t 29.6 24 0.00052 29.4 0.8 14 92-106 4-17 (105)
159 PRK04192 V-type ATP synthase s 27.9 5.2E+02 0.011 28.8 10.8 81 84-171 289-372 (586)
160 PRK09620 hypothetical protein; 26.6 1.2E+02 0.0026 29.4 5.2 45 83-130 2-51 (229)
161 COG0180 TrpS Tryptophanyl-tRNA 26.3 35 0.00076 34.7 1.5 37 91-133 9-46 (314)
162 PF10079 DUF2317: Uncharacteri 26.2 9.2E+02 0.02 26.7 19.8 27 297-323 346-372 (542)
163 PF09456 RcsC: RcsC Alpha-Beta 24.5 56 0.0012 27.0 2.0 25 105-129 6-30 (92)
164 KOG2144 Tyrosyl-tRNA synthetas 23.6 53 0.0011 32.9 2.0 54 302-365 183-237 (360)
165 PF04028 DUF374: Domain of unk 22.1 82 0.0018 24.8 2.5 19 111-129 22-40 (74)
166 PF07454 SpoIIP: Stage II spor 22.0 2E+02 0.0044 28.6 5.9 52 82-133 71-135 (268)
167 PF09840 DUF2067: Uncharacteri 21.6 5.4E+02 0.012 24.2 8.3 22 107-128 84-105 (190)
168 PF02525 Flavodoxin_2: Flavodo 20.9 1.8E+02 0.004 26.9 5.2 39 85-129 1-40 (199)
169 COG2945 Predicted hydrolase of 20.4 1.6E+02 0.0036 27.9 4.5 35 97-132 36-70 (210)
No 1
>PLN02286 arginine-tRNA ligase
Probab=100.00 E-value=1.9e-117 Score=960.91 Aligned_cols=506 Identities=81% Similarity=1.286 Sum_probs=462.8
Q ss_pred ccHHHHHHHHhhcCCCCCCCChHHHHHHHHHhCCCCCCceeeEeccCCeEEEEeCHHHHHHHHHHHHHcCCCCCCCcCCC
Q 010356 5 CSNNAMGLWSKIKGKGTEFKGPQPVGQAIMKNLPPSEMIESCSVAGPGFVNVVLSKNWMAKNIQKMLVDGIETWAPKLRV 84 (512)
Q Consensus 5 ~~n~a~~~ak~~~~~~~~~~~p~~iA~~i~~~l~~~~~i~~v~~~g~GfiN~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (512)
|||+||.|||.++|+|+++++|++||++|++.|...++|++|+++|||||||+|++.++.+.+.+++..+..++.+...+
T Consensus 37 a~n~a~~lak~~~~~~~~~k~P~~iA~~i~~~l~~~~~i~~v~vagpGfiNf~l~~~~l~~~l~~~~~~~~~~g~~~~~~ 116 (576)
T PLN02286 37 QCNNAMGLWSKLKGKGTSFKNPRAVAQAIVKNLPASEMIESTSVAGPGFVNVRLSASWLAKRIERMLVDGIDTWAPTLPV 116 (576)
T ss_pred ccchHHHHHHHhCccccccCCHHHHHHHHHHhCccccceeeEEEcCCCeEEEEECHHHHHHHHHHHHHcCcccCCCCCCC
Confidence 79999999999999999999999999999999987778999999999999999999999999988887654433333356
Q ss_pred ceEEEEeeCCCCCCCCcccchhhhhHHHHHHHHHHHCCCeEEEeeccCccchHHHHHHHHHHhhCCCCCccCcccHHHHH
Q 010356 85 KKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQ 164 (512)
Q Consensus 85 ~~v~Ve~~spNp~~~lHvGH~R~~iiGD~lar~l~~~G~~V~~~~~i~D~G~qi~~l~~~~~~~~~~~~~~~~~~i~~l~ 164 (512)
++|+||||||||+|||||||+||+||||+|||+|+++||+|+++|||||||+||++++.++...+|+.....+.++.++.
T Consensus 117 ~~v~VEfsSpNp~kplHvGHlRsaiiGdsLaril~~~G~~V~r~nyinD~G~Qi~~l~~~~~~~~~~~~~~~~~~i~~l~ 196 (576)
T PLN02286 117 KRAVVDFSSPNIAKEMHVGHLRSTIIGDTLARMLEFSGVEVLRRNHVGDWGTQFGMLIEHLFEKFPNWESVSDQAIGDLQ 196 (576)
T ss_pred ceEEEEecCCCCCCCCccccccchhhHHHHHHHHHHcCCceEEEEeecchHHHHHHHHHHHHHhcCcccccCcccHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999998876677765444667899998
Q ss_pred HHHHHHhcccCCChHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHcCCeEeeeccccccCchHHHHHHHH
Q 010356 165 EFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKGESFYNPYIPGVIDELS 244 (512)
Q Consensus 165 ~~y~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~L~I~f~~~~es~~~~~v~~~~~~L~ 244 (512)
.+|+++++.++.+|++.+++++.+.+||+||+++..+|++++++++++|+++|++|||+||..+||+|.+.+.++++.|+
T Consensus 197 ~~Y~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~lw~~~~~~~~~~~~~~y~~l~V~fd~~ges~y~~~~~~vi~~L~ 276 (576)
T PLN02286 197 EFYKAAKKRFDEDEEFKARAQQAVVRLQGGDPEYRAAWAKICEISRREFEKVYQRLRVELEEKGESFYNPYIPGVIEELE 276 (576)
T ss_pred HHHHHhhhhccCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhCCeeeecCchhhhhhHHHHHHHHH
Confidence 99999999998899999999999999999999999999999999999999999999999987788999888899999999
Q ss_pred hCCCeeeeCceEEEEecCCCCCeEEEecCCccccccchHHHHHHHHhhcCCceEEEEeeCcccchHHHHHHHHHHcCCCC
Q 010356 245 KQGLVEESQGARVIFIEGVNIPLIIVKSDGGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLS 324 (512)
Q Consensus 245 ~~g~~~~~dGa~~~~~~g~~~d~vl~ksDG~~~Y~~~DiA~~~~k~~~~~~d~~iyV~g~~q~~hf~~l~~~~~~~g~~~ 324 (512)
++|++|++||++|+++++.+.++||+||||++||+|+|||||+||++.+++|++|||||++|++||+|++++++++|+.+
T Consensus 277 ~~g~~~e~dGa~~v~l~~~~~~~vl~ksDGt~tY~t~DIA~~~~k~~~~~~d~~IyVvg~~q~~hf~~v~~~l~~lG~~~ 356 (576)
T PLN02286 277 SKGLVVESDGARVIFVEGFDIPLIVVKSDGGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQQHFDMVFKAAKRAGWLP 356 (576)
T ss_pred HCCCEEeeCCceEeeccCCCCceEEEECCCchhhHHHHHHHHHHHHhccCCCEEEEEEeCcHHHHHHHHHHHHHHcCCCc
Confidence 99999999999999987766789999999999999999999999998889999999999999999999999999999842
Q ss_pred CCCCCCCceEEEEeEEEECCCCcceeeecCCeecHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhchhhHHHHh
Q 010356 325 ADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFD 404 (512)
Q Consensus 325 ~~~~~~~~~~Hv~~g~V~~~~g~kmSkR~G~~v~l~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~airy~~ 404 (512)
+ +++.++.|+.||||++.+|+|||||+|++|+++||++++.++|.+.+.+|+..+++++++.+++|+.+|++|+||++
T Consensus 357 ~--~~~~~l~h~~~g~V~~~~g~kmStR~G~~v~L~dlldea~~~a~~~~~~~~~~~~~~~~~~~~~a~~vg~~Airy~~ 434 (576)
T PLN02286 357 E--DTYPRLEHVGFGLVLGEDGKRFRTRSGEVVRLVDLLDEAKSRSKAALIERGKDSEWTPEELEQAAEAVGYGAVKYAD 434 (576)
T ss_pred c--ccCCceEEEeeccEECCCCCcccCCCCCeeEHHHHHHHHHHHHHHHHHhccCccccchhhHHHHHHHhhhhhhhhhh
Confidence 1 12357999999999878888999999999999999999999999999998766778999999999999999999999
Q ss_pred hccCCCCCccccccccccccCCchHHHHHHHHHHHHHHHhhcCChhhhhhcCCCCCCCHHHHHHHHHHHhhHHHHHHHHH
Q 010356 405 LKNNRLTNYTFSFDQMLNDKGNTAVYLLYAHARICSIIRKSGKDIEELKKTGSLVLDHADERALGLHLLHFSEVIEEALT 484 (512)
Q Consensus 405 L~~~~~~~~~Fd~~~~~~~~~~~g~ylqY~~aR~~sil~k~~~~~~~~~~~~~~~l~~~~e~~L~~~l~~~~~~v~~a~~ 484 (512)
|++++.++++|||+++++++|||||||||||||+||||||++.........+...+.++.|++|+..|++||++|.+|++
T Consensus 435 L~~~~~~~~~Fd~d~~l~~~g~t~pYlQYahAR~~SIlrKa~~~~~~~~~~~~~~l~~~~E~~L~~~l~~fp~vv~~a~~ 514 (576)
T PLN02286 435 LKNNRLTNYTFSFDQMLDLKGNTAVYLLYAHARICSIIRKSGKDIDELKKTGKIVLDHPDERALGLHLLQFPEVVEEACT 514 (576)
T ss_pred hhcCCCCCCccCHHHHHhhcCCChHHHHHHHHHHHHHHHhccCccccccccccccCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999743211111112345689999999999999999999999
Q ss_pred hcChHHHHHHHHHHHHHHhcchhcccCC
Q 010356 485 NLLPNVVCEYLYNLSEYFTRFYSNCQVQ 512 (512)
Q Consensus 485 ~~~p~~l~~yl~~La~~fn~fY~~~~vl 512 (512)
+++||.||+||++||+.||+||++||||
T Consensus 515 ~~~P~~l~~Yl~~LA~~F~~fY~~~~Vl 542 (576)
T PLN02286 515 DLLPNRLCEYLYNLSEKFTKFYSNCKVN 542 (576)
T ss_pred hcCchHHHHHHHHHHHHHHHHHhcCccC
Confidence 9999999999999999999999999996
No 2
>COG0018 ArgS Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=6.7e-115 Score=928.61 Aligned_cols=488 Identities=37% Similarity=0.609 Sum_probs=437.5
Q ss_pred ccHHHHHHHHhhcCCCCCCCChHHHHHHHHHhCCCCCCceeeEeccCCeEEEEeCHHHHHHHHHHHHHcCCC-C-CCCcC
Q 010356 5 CSNNAMGLWSKIKGKGTEFKGPQPVGQAIMKNLPPSEMIESCSVAGPGFVNVVLSKNWMAKNIQKMLVDGIE-T-WAPKL 82 (512)
Q Consensus 5 ~~n~a~~~ak~~~~~~~~~~~p~~iA~~i~~~l~~~~~i~~v~~~g~GfiN~~l~~~~~~~~~~~~~~~~~~-~-~~~~~ 82 (512)
|||+||.+||.++ +||++||++|++.|+.++.|++|+++|||||||++++.++.+.+.+++..+.. + ....+
T Consensus 41 a~n~a~~laK~~~------~~P~eiA~~i~~~l~~~~~~~~veiaGpgfINf~l~~~~~~~~~~~~l~~~~~~~G~~~~~ 114 (577)
T COG0018 41 ATNIAFQLAKKLG------KNPREIAEEIAEKLDTDEIIEKVEIAGPGFINFFLSPEFLAELLLEILEKGDDRYGRSKLG 114 (577)
T ss_pred cchHHHHHhhhcC------CCHHHHHHHHHHhccccCcEeEEEEcCCCEEEEEECHHHHHHHHHHHHHhcccccCccccC
Confidence 7999999999999 99999999999999987889999999999999999999999999999876333 3 33446
Q ss_pred CCceEEEEeeCCCCCCCCcccchhhhhHHHHHHHHHHHCCCeEEEeeccCccchHHHHHHHHHHhhCCCCCccCcccHHH
Q 010356 83 RVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGE 162 (512)
Q Consensus 83 ~~~~v~Ve~~spNp~~~lHvGH~R~~iiGD~lar~l~~~G~~V~~~~~i~D~G~qi~~l~~~~~~~~~~~~~~~~~~i~~ 162 (512)
++++|+||||||||||||||||+||+||||+|||+|+++||+|+++|||||||+||++++.++.....+......+++.+
T Consensus 115 ~~~kV~iE~sSaNptkplHiGHlR~aiiGDsLaril~~~Gy~V~r~~yvnD~G~Q~~~l~~~~~~~~~e~~~~~~~~~~~ 194 (577)
T COG0018 115 KGKKVVIEYSSANPTGPLHIGHLRNAIIGDSLARILEFLGYDVTRENYVNDWGTQIGMLALSYEKRGREALGLTPEPDGY 194 (577)
T ss_pred CCCEEEEEEeCCCCCCCcccchhhhhHHHHHHHHHHHHcCCCeeEEeeECcHHHHHHHHHHHHHHhccccccCCCCcchH
Confidence 78999999999999999999999999999999999999999999999999999999999988765544322112345677
Q ss_pred HHHHHHHHhcccCCChHHH-HHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHcCCeEe-e--eccccccCchHH
Q 010356 163 LQEFYRRSKNRFDSDPAFK-ERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLE-E--KGESFYNPYIPG 238 (512)
Q Consensus 163 l~~~y~~~~~~~~~~~~~~-~~~~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~L~I~f~-~--~~es~~~~~v~~ 238 (512)
+.+.|+++++.++.+++.. +++++.+.++|.||+++ .+|+++++.++.+++++|++|||+|| | ++|++|++.+.+
T Consensus 195 lg~~y~~i~~~~~~~~~~~~~~~~~~~~k~e~~d~~~-~lw~~~v~~~l~~~k~~l~~l~V~fD~~~~E~e~~~~~~~~~ 273 (577)
T COG0018 195 LGEYYVKIAKDLEEDPGNDEEEAREEVEKLESGDEEA-ELWRKFVDLSLEGIKETLDRLGVKFDVYDSEGESFYNGKVEK 273 (577)
T ss_pred HHHHHHHHHHHHHhCcccchHHHHHHHHHHhcCChHH-HHHHHHHHHHHHHHHHHHHHhCcccceeeccchhhhcccHHH
Confidence 7788999888877766533 78899999999999999 99999999999999999999999995 4 477889999999
Q ss_pred HHHHHHhCCCeeeeCceEEEEec-----CCCCCeEEEecCCccccccchHHHHHHHHhhcCCceEEEEeeCcccchHHHH
Q 010356 239 VIDELSKQGLVEESQGARVIFIE-----GVNIPLIIVKSDGGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMV 313 (512)
Q Consensus 239 ~~~~L~~~g~~~~~dGa~~~~~~-----g~~~d~vl~ksDG~~~Y~~~DiA~~~~k~~~~~~d~~iyV~g~~q~~hf~~l 313 (512)
+++.|+++|++|+++||+|+++. |+++|+||+||||+++|+|+|||||.||++ +++|++|||||+||++||+|+
T Consensus 274 vv~~L~~~~~~~e~~GA~~vdl~~~~~~gd~~~~vl~KSDGt~lY~t~DIAy~~~K~~-~~~d~~IyV~gadq~~~~~ql 352 (577)
T COG0018 274 VVEDLEEKGLLYEDDGALVVDLLKFKKFGDDKDRVLQKSDGTYLYFTRDIAYHLYKFE-RGFDKLIYVLGADQHGHFKQL 352 (577)
T ss_pred HHHHHHhcCCEeeeCCeEEEehhhhhhcCCCCCeEEEEcCCCeeeehhHHHHHHHHHh-cCCCEEEEEeCCcchhHHHHH
Confidence 99999999999999999988774 678899999999999999999999999995 899999999999999999999
Q ss_pred HHHHHHcCCCCCCCCCCCceEEEEeEEEECCCCcceeeecCCeecHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHH
Q 010356 314 FSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAKNRSKAVLIERGKDKEWTEEELEQTAE 393 (512)
Q Consensus 314 ~~~~~~~g~~~~~~~~~~~~~Hv~~g~V~~~~g~kmSkR~G~~v~l~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 393 (512)
+.+++++|+.++ ...+.|.+||+|++.+|+|||||.|++|+++|+++++.+++.+.+.++ .... +++|+
T Consensus 353 ~~~l~~~g~~~~----~~~~~h~~~~l~~~~~g~kmStR~G~~vtl~dllde~~era~~~~~~~-~~~~------~~iA~ 421 (577)
T COG0018 353 KAVLELLGYGPD----KEVLLHQGVGLVRGGEGVKMSTRAGNVVTLDDLLDEAGERAPEEMEEK-EEKN------EEIAE 421 (577)
T ss_pred HHHHHHhcCCCc----cceEEEEEEeeeECCCCccccccCCceEEHHHHHHHHHHHhhhHhhhh-hhhh------HHHHH
Confidence 999999999641 247899999999999999999999999999999999999999999875 3221 89999
Q ss_pred hhchhhHHHHhhccCCCCCccccccccccccCCchHHHHHHHHHHHHHHHhhcCChhhhh-hcCCCCCCCHHHHHHHHHH
Q 010356 394 AVGYGAAKYFDLKNNRLTNYTFSFDQMLNDKGNTAVYLLYAHARICSIIRKSGKDIEELK-KTGSLVLDHADERALGLHL 472 (512)
Q Consensus 394 ~~~~~airy~~L~~~~~~~~~Fd~~~~~~~~~~~g~ylqY~~aR~~sil~k~~~~~~~~~-~~~~~~l~~~~e~~L~~~l 472 (512)
.+|++||||++|++++.++++|||+++++++|||+|||||||||+||||||++....... ..+ ..+.++.|++|+..|
T Consensus 422 ~vgi~Avry~~l~~~~~~~~~Fd~d~~lsfegNt~pYvQYA~ARi~SIlrka~e~~~~~~~~~~-~~l~~~~E~~L~~~L 500 (577)
T COG0018 422 VVGIDAVRYADLSRSRDKDYVFDWDKALSFEGNTAPYVQYAHARICSILRKAGEDELDLSTEAD-ALLTELEERELVKKL 500 (577)
T ss_pred HhhhhhHHHHHHhcCCCCCcEeeHHHHHhccCCCchhHHHHHHHHHHHHHhccccccccccccc-hhccChHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999975321111 111 245677899999999
Q ss_pred HhhHHHHHHHHHhcChHHHHHHHHHHHHHHhcchhcccCC
Q 010356 473 LHFSEVIEEALTNLLPNVVCEYLYNLSEYFTRFYSNCQVQ 512 (512)
Q Consensus 473 ~~~~~~v~~a~~~~~p~~l~~yl~~La~~fn~fY~~~~vl 512 (512)
++||++|++|++.++||.+|.||++||+.||+||++||||
T Consensus 501 ~~fp~vl~~aa~~~~Ph~la~YL~~LA~~Fn~fY~~~~Vl 540 (577)
T COG0018 501 LEFPEVLEEAAEELEPHRLANYLYDLAGSFNSFYNACPVL 540 (577)
T ss_pred HHhHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhCCcC
Confidence 9999999999999999999999999999999999999997
No 3
>PRK12451 arginyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=4.2e-108 Score=887.54 Aligned_cols=484 Identities=34% Similarity=0.552 Sum_probs=435.0
Q ss_pred ccHHHHHHHHhhcCCCCCCCChHHHHHHHHHhCCCCCCceeeEeccCCeEEEEeCHHHHHHHHH-HHHHcCCCCCC-CcC
Q 010356 5 CSNNAMGLWSKIKGKGTEFKGPQPVGQAIMKNLPPSEMIESCSVAGPGFVNVVLSKNWMAKNIQ-KMLVDGIETWA-PKL 82 (512)
Q Consensus 5 ~~n~a~~~ak~~~~~~~~~~~p~~iA~~i~~~l~~~~~i~~v~~~g~GfiN~~l~~~~~~~~~~-~~~~~~~~~~~-~~~ 82 (512)
||| +|.|||.++ ++|++||++|++.|.. +.|++++++|| ||||+|+++++.+.+. +++..+..++. +..
T Consensus 40 ~~~-~~~lak~~~------~~P~~iA~~i~~~l~~-~~i~~ve~~g~-fiN~~l~~~~~~~~~~~~~~~~~~~~g~~~~~ 110 (562)
T PRK12451 40 AFP-CFSLAKQYK------KAPAIIAKEVAEKLSD-PFFTKVEAVGP-YVNVFFNRETVSDAVLKTILAEKEEYGQNHFG 110 (562)
T ss_pred cch-HHHHHHHcC------CCHHHHHHHHHHhccc-cccceeEeeCC-EEEEEECHHHHHHHHHHHHHhhHhhcCCCccC
Confidence 689 699999999 9999999999999965 46899999996 9999999999977754 66655443222 224
Q ss_pred CCceEEEEeeCCCCCCCCcccchhhhhHHHHHHHHHHHCCCeEEEeeccCccchHHHHHHHHHHhhCCCCCccCcccHHH
Q 010356 83 RVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGE 162 (512)
Q Consensus 83 ~~~~v~Ve~~spNp~~~lHvGH~R~~iiGD~lar~l~~~G~~V~~~~~i~D~G~qi~~l~~~~~~~~~~~~~~~~~~i~~ 162 (512)
++++|+||||||||+|||||||+||++|||+|||+|+++||+|+++|||||||+||++++.++ .++++.....+.++.+
T Consensus 111 ~~~~v~vE~sSpNp~kplHvGH~R~aiiGd~l~ril~~~G~~V~r~nyinD~G~Q~~~l~~~~-~~~~~~~~~~~~~~~~ 189 (562)
T PRK12451 111 CEKTVVIDYSSPNIAKPFSMGHLRSTMIGNALKHIAEKCGYEVVGINYIGDWGTQFGKLITAY-KKWGNEAVVKEDPIRE 189 (562)
T ss_pred CCCEEEEEecCCCCCCCcccchhhhHHHHHHHHHHHHHCCCCeEEEeeecCchHHHHHHHHHH-HHhCCccccccCchHH
Confidence 578999999999999999999999999999999999999999999999999999999998766 4455433234568899
Q ss_pred HHHHHHHHhcccCCChHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHcCCeEee-eccccccCchHHHHH
Q 010356 163 LQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEE-KGESFYNPYIPGVID 241 (512)
Q Consensus 163 l~~~y~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~L~I~f~~-~~es~~~~~v~~~~~ 241 (512)
+..+|+++++.++.+|++.+++++.+.+||+||+++.++|+.++++++++|+++|++|||+||+ .+||+|.+.++++++
T Consensus 190 l~~~Y~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~w~~~~~~~l~~~~~~~~~l~V~fD~~~~es~~~~~~~~v~~ 269 (562)
T PRK12451 190 LFKLYVQFHEEVKDDEELEEEGRAWFKKLEEGDEEAVELWNWFRHESLKEFSRIYELLGVEFTNFQGEAFYNDLMEDFIG 269 (562)
T ss_pred HHHHHHHHHHhhccChhHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCceeecchHhhhhhHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999985 478999888899999
Q ss_pred HHHhCCCeeeeCceEEEEecCCC-CCeEEEecCCccccccchHHHHHHHHhhcCCceEEEEeeCcccchHHHHHHHHHHc
Q 010356 242 ELSKQGLVEESQGARVIFIEGVN-IPLIIVKSDGGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRA 320 (512)
Q Consensus 242 ~L~~~g~~~~~dGa~~~~~~g~~-~d~vl~ksDG~~~Y~~~DiA~~~~k~~~~~~d~~iyV~g~~q~~hf~~l~~~~~~~ 320 (512)
+|+++|++|++||++|+++++.+ +|+||+||||++||+|+|||||.||++++++|++|||||++|++||+|++++++++
T Consensus 270 ~L~~~g~~~e~dGa~~~~~~~~g~~~~vl~ksDGt~~Y~t~DiA~~~~k~~~~~~d~~IyV~g~dq~~h~~~l~~~~~~l 349 (562)
T PRK12451 270 ILEEHDLLEESEGALVVNLEEEGMPPCLIRKSDGATIYATRDLTAALYRQNTFGFDKALYVVGPEQSLHFNQFFTVLKKL 349 (562)
T ss_pred HHHHCCCEEecCCeEEEEecccCCCceEEEeCCCccccchhHHHHHHHHhhccCCCEEEEEeCCcHHHHHHHHHHHHHHc
Confidence 99999999999999999987432 68999999999999999999999999888999999999999999999999999999
Q ss_pred CCCCCCCCCCCceEEEEeEEEECCCCcceeeecCCeecHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhchhhH
Q 010356 321 GWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAA 400 (512)
Q Consensus 321 g~~~~~~~~~~~~~Hv~~g~V~~~~g~kmSkR~G~~v~l~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ai 400 (512)
|+. ++.++.|+.||+|.. +|+|||||+|++|+++||++++.++|.+.+.+|+.. + ++.+++++.+|++|+
T Consensus 350 g~~-----~~~~l~h~~~g~V~~-~g~kmStR~G~~v~l~dLldea~~~a~~~~~~~~~~--l--~~~~~~a~~vg~~Ai 419 (562)
T PRK12451 350 GYT-----WVDGMEHVPFGLILK-DGKKMSTRKGRVVLLEEVLEEAIELAKQNIEEKNPN--L--KQKEEVAKQVGVGAV 419 (562)
T ss_pred CCC-----cccCeEEEeeeeEec-CCCCCcCCCCCeeEHHHHHHHHHHHHHHHHHhhccc--c--ccHHHHHHHhcccee
Confidence 984 345799999999985 677999999999999999999999999999888543 4 346789999999999
Q ss_pred HHHhhccCCCCCccccccccccccCCchHHHHHHHHHHHHHHHhhcCChhhhhhcCCCCCCCHHHHHHHHHHHhhHHHHH
Q 010356 401 KYFDLKNNRLTNYTFSFDQMLNDKGNTAVYLLYAHARICSIIRKSGKDIEELKKTGSLVLDHADERALGLHLLHFSEVIE 480 (512)
Q Consensus 401 ry~~L~~~~~~~~~Fd~~~~~~~~~~~g~ylqY~~aR~~sil~k~~~~~~~~~~~~~~~l~~~~e~~L~~~l~~~~~~v~ 480 (512)
||++|++++.++++|||+++++++|||+|||||||||+|||+||++.+.. ..+ ..+.++.|++|+..+..||+++.
T Consensus 420 ry~~l~~~~~~~~~Fd~d~~l~~~g~t~pYiQYa~AR~~SIlrka~~~~~---~~~-~~l~~~~E~~Ll~~L~~~~~~v~ 495 (562)
T PRK12451 420 IFHDLKNERMHNIEFSLENMLKFEGETGPYVQYTHARACSILRKESVEFE---TCT-FALKDDYSWSVVKLLNKFPQVIE 495 (562)
T ss_pred eeHHhhcCCCCCceECHHHHhCcCCCccHHHHHHHHHHHHHHHhcCCCcc---ccc-cCCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999864221 112 23568999999999999999999
Q ss_pred HHHHhcChHHHHHHHHHHHHHHhcchhcccCC
Q 010356 481 EALTNLLPNVVCEYLYNLSEYFTRFYSNCQVQ 512 (512)
Q Consensus 481 ~a~~~~~p~~l~~yl~~La~~fn~fY~~~~vl 512 (512)
+++++++||.+|+|+++||..||+||+.|+||
T Consensus 496 ~a~e~~ep~~~~~yl~~LA~~fN~fy~~~~Vl 527 (562)
T PRK12451 496 AAFNKNEPSVISKYVLDVAQSFNKYYGNVRIL 527 (562)
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 99999999999999999999999999999996
No 4
>KOG4426 consensus Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.4e-106 Score=798.13 Aligned_cols=501 Identities=63% Similarity=1.063 Sum_probs=474.2
Q ss_pred ccHHHHHHHHhhcCCCCCCCChHHHHHHHHHhCCCCCCceeeEeccCCeEEEEeCHHHHHHHHHHHHHcCCCCCCCcCCC
Q 010356 5 CSNNAMGLWSKIKGKGTEFKGPQPVGQAIMKNLPPSEMIESCSVAGPGFVNVVLSKNWMAKNIQKMLVDGIETWAPKLRV 84 (512)
Q Consensus 5 ~~n~a~~~ak~~~~~~~~~~~p~~iA~~i~~~l~~~~~i~~v~~~g~GfiN~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (512)
+||.||.+++.+|+||.+++ |++||++|...+|.+++||+|+|+||||||++|+.+|+.+.+..++.+|-. .+....
T Consensus 111 QCNnAMgl~~~lK~kg~~~~-P~~va~~l~~~lP~se~vEk~~iagpGFiNv~Ls~d~~~~~i~nll~~GV~--~P~l~~ 187 (656)
T KOG4426|consen 111 QCNNAMGLSSKLKGKGINKR-PRDVAQELQKHLPTSEMVEKCEIAGPGFINVFLSKDYMSKQISNLLVNGVK--LPTLSV 187 (656)
T ss_pred cccchhhHHHHHhhcCCccC-cHHHHHHHHhhCCchhhhhhhcccCCceEEEEechHHHHHHHHHHHHcCCC--Ccccce
Confidence 79999999999999999984 999999999999998999999999999999999999999999999887643 344567
Q ss_pred ceEEEEeeCCCCCCCCcccchhhhhHHHHHHHHHHHCCCeEEEeeccCccchHHHHHHHHHHhhCCCCCccCcccHHHHH
Q 010356 85 KKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQ 164 (512)
Q Consensus 85 ~~v~Ve~~spNp~~~lHvGH~R~~iiGD~lar~l~~~G~~V~~~~~i~D~G~qi~~l~~~~~~~~~~~~~~~~~~i~~l~ 164 (512)
++|+|+|+|||++|.|||||+||+||||+|||+|++.|++|.|+||+||||+|+|||++++++++|+... ..++|+||.
T Consensus 188 KrvlVDFSSPNIAKeMHVGHLRSTIIGdsl~RllE~~~~dVlR~NHvGDWGTQFGMLIahL~dkFPd~l~-vsp~IgDLQ 266 (656)
T KOG4426|consen 188 KRVLVDFSSPNIAKEMHVGHLRSTIIGDSLCRLLEFSGVDVLRRNHVGDWGTQFGMLIAHLFDKFPDYLS-VSPPIGDLQ 266 (656)
T ss_pred eeEEEecCCCcHHHHhhhhhhhhhhHhHHHHHHHHhcCcceEeeccccchHHHHHHHHHHHHHhCCchhc-cCCCchhHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999998664 346999999
Q ss_pred HHHHHHhcccCCChHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHcCCeEeeeccccccCchHHHHHHHH
Q 010356 165 EFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKGESFYNPYIPGVIDELS 244 (512)
Q Consensus 165 ~~y~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~L~I~f~~~~es~~~~~v~~~~~~L~ 244 (512)
-.|++++.+++.+++|+++|.+.+++|+.|||..++.|..+|+.|.++|.+.|++|+|+....|||+|.+.+.++++.|.
T Consensus 267 vFYkeSKkrFD~deeFKkrAyq~VV~LQggdp~~~kAW~~ICdvSr~ef~kvY~rLdi~l~e~GESFYq~~m~~vveel~ 346 (656)
T KOG4426|consen 267 VFYKESKKRFDEDEEFKKRAYQAVVRLQGGDPDIRKAWALICDVSRKEFQKVYNRLDISLKERGESFYQDRMAEVVEELK 346 (656)
T ss_pred HHHHHHHhccCcCHHHHHHHHHHeeecccCCChHHHHHHHHHHhhHHHHHHHHHHhcchHhhcchhhhhhHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999988999999999999999999
Q ss_pred hCCCeeeeCceEEEEecCCCCCeEEEecCCccccccchHHHHHHHHhhcCCceEEEEeeCcccchHHHHHHHHHHcCCCC
Q 010356 245 KQGLVEESQGARVIFIEGVNIPLIIVKSDGGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLS 324 (512)
Q Consensus 245 ~~g~~~~~dGa~~~~~~g~~~d~vl~ksDG~~~Y~~~DiA~~~~k~~~~~~d~~iyV~g~~q~~hf~~l~~~~~~~g~~~ 324 (512)
.+|++.++||+-+++.+|.+.|..++||||..||.|+|+|+.++|+.+..+||+|||+|.+|+.||..+|++++..||..
T Consensus 347 ~kglvee~~Gr~i~f~~g~~IPLtvVKSDGGftYdtsDlaAl~yRl~EEkadwiIYVvD~GQs~Hf~t~fkAar~~gwld 426 (656)
T KOG4426|consen 347 SKGLVEEDDGRRIMFPEGCDIPLTVVKSDGGFTYDTSDLAALKYRLNEEKADWIIYVVDSGQSQHFNTIFKAARKAGWLD 426 (656)
T ss_pred cCCceeecCCceEeccCCCCcceEEEecCCCcccccchHHHHHHHHHHhhcCeEEEEeeCchhHHHHHHHHHHHHcCccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999963
Q ss_pred CCCCCCCceEEEEeEEEECCCCcceeeecCCeecHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhchhhHHHHh
Q 010356 325 ADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFD 404 (512)
Q Consensus 325 ~~~~~~~~~~Hv~~g~V~~~~g~kmSkR~G~~v~l~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~airy~~ 404 (512)
+..++..|++||+|++.||+|+.||.|.+|.|.|||+++..++.+.+.+||+...|+|+|+...++.+|-++|+|.+
T Consensus 427 ---~~~~RV~HvgFGlVLGeD~KkFkTRsgetVrL~DLLdEg~kRs~~~Liergrdk~~tpeeL~~a~eavayGciKYaD 503 (656)
T KOG4426|consen 427 ---PTYPRVEHVGFGLVLGEDKKKFKTRSGETVRLLDLLDEGKKRSKEKLIERGRDKVLTPEELDAAQEAVAYGCIKYAD 503 (656)
T ss_pred ---CCccceeeeeeeeEEccCcccccccccceeeHHHHHHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHhcchhHhh
Confidence 56788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCCCCCccccccccccccCCchHHHHHHHHHHHHHHHhhcCCh----hhhhhcCCCCCCCHHHHHHHHHHHhhHHHHH
Q 010356 405 LKNNRLTNYTFSFDQMLNDKGNTAVYLLYAHARICSIIRKSGKDI----EELKKTGSLVLDHADERALGLHLLHFSEVIE 480 (512)
Q Consensus 405 L~~~~~~~~~Fd~~~~~~~~~~~g~ylqY~~aR~~sil~k~~~~~----~~~~~~~~~~l~~~~e~~L~~~l~~~~~~v~ 480 (512)
|+..+.++|.|++|++++-.|||++|+.|||+|||||.||.+.+. ..+.......|.++.||+|.++|++|++.++
T Consensus 504 L~hnR~~dY~FSFDkML~DrGnTAvYLLYa~tRIcSI~rksg~d~~~l~~~lkkT~ki~LDH~~E~kLg~~lLkf~e~v~ 583 (656)
T KOG4426|consen 504 LSHNRITDYIFSFDKMLEDRGNTAVYLLYAYTRICSIARKSGKDNVDLIKELKKTGKIALDHEKEWKLGKHLLKFAEIVE 583 (656)
T ss_pred hccccccceeeeHHHHhhccCcceehhHHHHHHHHHHHHHcCCchhhHHHHHHhcCccccCCHHHHHHHHHHHhHHHHHH
Confidence 999999999999999999999999999999999999999998762 2233333356789999999999999999999
Q ss_pred HHHHhcChHHHHHHHHHHHHHHhcchhcccCC
Q 010356 481 EALTNLLPNVVCEYLYNLSEYFTRFYSNCQVQ 512 (512)
Q Consensus 481 ~a~~~~~p~~l~~yl~~La~~fn~fY~~~~vl 512 (512)
.+.+++-||.+|+|+++||..|+.||++|.|.
T Consensus 584 ~~~~~L~lh~lC~y~y~l~t~Ft~FY~~Cyv~ 615 (656)
T KOG4426|consen 584 KALDSLFLHVLCDYLYELATLFTEFYDSCYVI 615 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccEEe
Confidence 99999999999999999999999999999763
No 5
>TIGR00456 argS arginyl-tRNA synthetase. This model recognizes arginyl-tRNA synthetase in every completed genome to date. An interesting feature of the alignment of all arginyl-tRNA synthetases is a fairly deep split between two families. One family includes archaeal, eukaryotic and organellar, spirochete, E. coli, and Synechocystis sp. The second, sharing a deletion of about 25 residues in the central region relative to the first, includes Bacillus subtilis, Aquifex aeolicus, the Mycoplasmas and Mycobacteria, and the Gram-negative bacterium Helicobacter pylori.
Probab=100.00 E-value=3.9e-101 Score=836.21 Aligned_cols=484 Identities=37% Similarity=0.585 Sum_probs=428.1
Q ss_pred ccHHHHHHHHhhcCCCCCCCChHHHHHHHHHhCCCCCCceeeEeccCCeEEEEeCHHHHHHHHH-HHHHcCCCCCCCcCC
Q 010356 5 CSNNAMGLWSKIKGKGTEFKGPQPVGQAIMKNLPPSEMIESCSVAGPGFVNVVLSKNWMAKNIQ-KMLVDGIETWAPKLR 83 (512)
Q Consensus 5 ~~n~a~~~ak~~~~~~~~~~~p~~iA~~i~~~l~~~~~i~~v~~~g~GfiN~~l~~~~~~~~~~-~~~~~~~~~~~~~~~ 83 (512)
|||+||.+||.++ ++|++||++|++.|...++|++|+++|| ||||+|+++++...+. .++..+..++.....
T Consensus 38 ~~~~a~~lak~~~------~~P~~iA~~i~~~l~~~~~i~~ve~~gp-fiN~~l~~~~~~~~~~~~~~~~~~~~g~~~~~ 110 (566)
T TIGR00456 38 ASNIAFPLAKVLK------KNPRAIAEEIVLKLKTGEIIEKVEAAGP-FINFFLSPQKLLERLIQKILTQKEDYGSKKLK 110 (566)
T ss_pred ccHHHHHHHHHcC------CCHHHHHHHHHHhCCCcCcEeEEEEeCC-EEEEEEcHHHHHHHHHHHHHhcccccCCCCCC
Confidence 7999999999999 9999999999999987788999999998 9999999987777754 666555442222122
Q ss_pred CceEEEEeeCCCCCCCCcccchhhhhHHHHHHHHHHHCCCeEEEeeccCccchHHHHHHHHHHhhCCCCC-ccCcccHHH
Q 010356 84 VKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSE-DANETAIGE 162 (512)
Q Consensus 84 ~~~v~Ve~~spNp~~~lHvGH~R~~iiGD~lar~l~~~G~~V~~~~~i~D~G~qi~~l~~~~~~~~~~~~-~~~~~~i~~ 162 (512)
+++|+||||||||+||+||||+|++++||+|+|+|+++||+|.++|||||||+||++++.++.....+.. .....++.+
T Consensus 111 ~~~v~ve~~spn~~~~~hiGh~r~~~~gd~l~r~~~~~g~~v~r~~yinD~G~Q~~~l~~~~~~~~~~~~~~~~~~~~~~ 190 (566)
T TIGR00456 111 NKKIIIEFSSANPAGPLHIGHLRNAIIGDSLARILEFLGYDVIREYYVNDWGRQFGLLALGVEKFGNEKLNEAVKKPDHG 190 (566)
T ss_pred CCeEEEEecCCCCCCCCchhhhHHHHHHHHHHHHHHHCCCCeeEEeeecchHHHHHHHHHHHHHhCCccccCcccCChHH
Confidence 6799999999999999999999999999999999999999999999999999999999987754333211 113456778
Q ss_pred HHHHHHHHhcccCCChHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHcCCeEe-ee--ccccccCchHHH
Q 010356 163 LQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLE-EK--GESFYNPYIPGV 239 (512)
Q Consensus 163 l~~~y~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~L~I~f~-~~--~es~~~~~v~~~ 239 (512)
+...|+.+++.++.++++.+++++.+.+||.||+++..+|+.+++++++.|+++|++|||+|| |+ +|+.|.+.++++
T Consensus 191 ~~~~Y~~~~~~~~~~~~~~~~~~~~~~~le~~d~~~~~~w~~~~~~~l~~~~~~~~~l~V~fD~~~~E~e~~~~~~~~~v 270 (566)
T TIGR00456 191 LEGFYVEINKRLEENEELEEEARELFVKLESGDEEAIKLWKRLVEYSLEGIKETLARLNIHFDSFVWEGESVKNGMVPKV 270 (566)
T ss_pred HHHHHHHHHHHHhhCccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCceeeeeccccccccccHHHH
Confidence 888999999989899999999999999999999999999999999999999999999999997 65 567788899999
Q ss_pred HHHHHhCCCeeeeCceEEEEec--CCC-CCeEEEecCCccccccchHHHHHHHHhhcCCceEEEEeeCcccchHHHHHHH
Q 010356 240 IDELSKQGLVEESQGARVIFIE--GVN-IPLIIVKSDGGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSA 316 (512)
Q Consensus 240 ~~~L~~~g~~~~~dGa~~~~~~--g~~-~d~vl~ksDG~~~Y~~~DiA~~~~k~~~~~~d~~iyV~g~~q~~hf~~l~~~ 316 (512)
++.|+++|++|++ |++|++++ |++ +|+||+||||++||+|+|||||.+|+++ ++|++|||||++|++||++++++
T Consensus 271 ~~~L~~~g~~~~~-Ga~~~~~~~~~d~~~~~vl~ksDGt~~Y~t~DiA~~~~k~~~-~~d~iI~V~g~~q~~h~~~v~~~ 348 (566)
T TIGR00456 271 LEDLKEKGLVVED-GALWLDLTLFGDKDKDRVLQKSDGTYLYLTRDIAYHLDKLER-GFDKMIYVWGSDHHLHIAQFFAI 348 (566)
T ss_pred HHHHHHCCCEEEc-CCEEEEcccccCCCCCeEEEECCCCceechhhHHHHHHHHhc-CCCEEEEEecCcHHHHHHHHHHH
Confidence 9999999999977 99999987 455 6999999999999999999999999965 99999999999999999999999
Q ss_pred HHHcCCCCCCCCCCCceEEEEeEEEECCCCcceeeecCCeecHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhc
Q 010356 317 AKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVG 396 (512)
Q Consensus 317 ~~~~g~~~~~~~~~~~~~Hv~~g~V~~~~g~kmSkR~G~~v~l~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 396 (512)
++++|+. .+.++.|++||+|.+ .|||||+||+|+++|+++++.+++.+.+.+++.. +.+++++.+|
T Consensus 349 l~~lG~~-----~~~~l~h~~~~~V~~---~kmSkr~Gn~V~~~dll~~~~~ra~~~i~~~~~~------~~~~~~~~vg 414 (566)
T TIGR00456 349 LEKLGFY-----KKKELIHLNFGMVPL---GSMKTRRGNVISLDNLLDEASKRAGNVITIKNDL------EEEDVADAVG 414 (566)
T ss_pred HHHcCCC-----CCCceEEEEEEEEEC---CCCCccCCceeeHHHHHHHHHHHHHHHHHhcCCc------cHHHHHHHhc
Confidence 9999983 346899999999985 4799999999999999999999999999887542 5678899999
Q ss_pred hhhHHHHhhccCCCCCccccccccccccCCchHHHHHHHHHHHHHHHhhcCChhhhhhcCCCCCCCHHHHHHHHHHHhhH
Q 010356 397 YGAAKYFDLKNNRLTNYTFSFDQMLNDKGNTAVYLLYAHARICSIIRKSGKDIEELKKTGSLVLDHADERALGLHLLHFS 476 (512)
Q Consensus 397 ~~airy~~L~~~~~~~~~Fd~~~~~~~~~~~g~ylqY~~aR~~sil~k~~~~~~~~~~~~~~~l~~~~e~~L~~~l~~~~ 476 (512)
++|+||++|+..+.++++|||+.++++++|+++||||+|+|+|||++|++.+.......+ ..+.++.|+.|+..+.+||
T Consensus 415 ~dAvRy~~L~~~~~~d~~Fd~d~~~~~~~n~~~yiqYa~aR~~SIlrK~~~~~~~~~~~~-~~~~~~~e~~Ll~~l~~~~ 493 (566)
T TIGR00456 415 IGAVRYFDLSQNRETHYVFDWDAMLSFEGNTAPYIQYAHARICSILRKADIDGEKLIADD-FSLLEEKEKELLKLLLQFP 493 (566)
T ss_pred ccceeeHHhhcCCCCCceecHHHHhccCCCCchhHHHHHHHHHHHHHhcccccccccccc-cCCCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999864321111111 1234788999999999999
Q ss_pred HHHHHHHHhcChHHHHHHHHHHHHHHhcchhcccCC
Q 010356 477 EVIEEALTNLLPNVVCEYLYNLSEYFTRFYSNCQVQ 512 (512)
Q Consensus 477 ~~v~~a~~~~~p~~l~~yl~~La~~fn~fY~~~~vl 512 (512)
+++.+++++++||.+|+|+++||..||+||+.||||
T Consensus 494 ~~v~~a~~~~~p~~~~~~l~~La~~~N~yy~~~~Vl 529 (566)
T TIGR00456 494 DVLEEAAEELEPHVLTNYLYELASLFSSFYKACPVL 529 (566)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhcCccC
Confidence 999999999999999999999999999999999996
No 6
>PRK01611 argS arginyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=4.3e-92 Score=757.40 Aligned_cols=421 Identities=37% Similarity=0.578 Sum_probs=376.3
Q ss_pred ccHHHHHHHHhhcCCCCCCCChHHHHHHHHHhCCCCCCceeeEeccCCeEEEEeCHHHHHHHHHHHHHcCCCCC-CCcCC
Q 010356 5 CSNNAMGLWSKIKGKGTEFKGPQPVGQAIMKNLPPSEMIESCSVAGPGFVNVVLSKNWMAKNIQKMLVDGIETW-APKLR 83 (512)
Q Consensus 5 ~~n~a~~~ak~~~~~~~~~~~p~~iA~~i~~~l~~~~~i~~v~~~g~GfiN~~l~~~~~~~~~~~~~~~~~~~~-~~~~~ 83 (512)
|||+||.+||.++ ++|++||++|++. |++++++|||||||+|+++++.+.+.+++..+..++ .+...
T Consensus 42 ~~~~a~~lak~~~------~~p~~ia~~i~~~------i~~v~~~~~gfiN~~l~~~~~~~~~~~~~~~~~~~g~~~~~~ 109 (507)
T PRK01611 42 ATNVAMQLAKKLK------KNPREIAEEIVEA------IEKVEIAGPGFINFFLDPAALAELVLAILEAGERYGRSDIGK 109 (507)
T ss_pred ecHHHHHHHHHcC------CCHHHHHHHHHhh------eeEEEEeCCCEEEEEECHHHHHHHHHHHHhchhhcCCCcCCC
Confidence 6999999999999 9999999999985 789999999999999999999999988876554422 23346
Q ss_pred CceEEEEeeCCCCCCCCcccchhhhhHHHHHHHHHHHCCCeEEEeeccCccchHHHHHHHHHHhhCCCCCccCcccHHHH
Q 010356 84 VKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGEL 163 (512)
Q Consensus 84 ~~~v~Ve~~spNp~~~lHvGH~R~~iiGD~lar~l~~~G~~V~~~~~i~D~G~qi~~l~~~~~~~~~~~~~~~~~~i~~l 163 (512)
+++|+||||||||+||+||||+|++++||+|+|+|+++||+|++++|+||||+|+++++...
T Consensus 110 ~~~v~Ie~~spnp~g~lHiGH~R~~iigD~laR~lr~~G~~V~~~~~i~D~G~qi~~~a~~~------------------ 171 (507)
T PRK01611 110 GKKVVVEYVSANPTGPLHVGHLRSAVIGDALARILEFAGYDVTREYYVNDAGTQIGMLIASL------------------ 171 (507)
T ss_pred CCEEEEEecCCCCCCCCcCCchHHHHHHHHHHHHHHHcCCcEEEEeeeCCccHHHHHHHHHH------------------
Confidence 78999999999999999999999999999999999999999999999999999999775321
Q ss_pred HHHHHHHhcccCCChHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHcCCeEe-eecc--ccccCchHHHH
Q 010356 164 QEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLE-EKGE--SFYNPYIPGVI 240 (512)
Q Consensus 164 ~~~y~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~L~I~f~-~~~e--s~~~~~v~~~~ 240 (512)
...|+++++.+++.|+++|++|||+|| |.++ +.+.+.+++++
T Consensus 172 -----------------------------------~~~~~~~~~~~~~~~~~~l~~LgI~~D~~~~es~~~~~~~~~~~~ 216 (507)
T PRK01611 172 -----------------------------------ELLWRKAVDISLDEIKEDLDRLGVHFDVWFSESELYYNGKVDEVV 216 (507)
T ss_pred -----------------------------------HHHHHHHHHHHHHHHHHHHHHcCCeeeEEeecCcchhcchHHHHH
Confidence 026888999999999999999999996 5544 45678899999
Q ss_pred HHHHhCCCee-eeCceEEEEec--CCCCCeEEEecCCccccccchHHHHHHHHhhcCCceEEEEeeCcccchHHHHHHHH
Q 010356 241 DELSKQGLVE-ESQGARVIFIE--GVNIPLIIVKSDGGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAA 317 (512)
Q Consensus 241 ~~L~~~g~~~-~~dGa~~~~~~--g~~~d~vl~ksDG~~~Y~~~DiA~~~~k~~~~~~d~~iyV~g~~q~~hf~~l~~~~ 317 (512)
+.|+++|++| +++|++||+++ |+++|+||+||||++||+|+|||||.+|+++ +|++|||||++|++||+|+++++
T Consensus 217 ~~L~~~G~~y~~~~Ga~~~~~~~~~~~~~~vl~ksdG~~~Y~t~Dia~~~~k~~~--~d~~i~V~g~~q~~hf~~~~~~~ 294 (507)
T PRK01611 217 EDLKEKGLLYVESDGALWVRLTEFGDDKDRVLIKSDGTYTYFTRDIAYHLYKFER--FDRVIYVVGADHHGHFKRLKAAL 294 (507)
T ss_pred HHHHHCCCEEEeeCCcEEEEchhhCCCCCeEEEECCCCccchHHHHHHHHHHHhh--cCEEEEEECCChHHHHHHHHHHH
Confidence 9999999999 99999999987 5567999999999999999999999999965 89999999999999999999999
Q ss_pred HHcCCCCCCCCCCCceEEEEeEEEECCCCcceeeecCCeecHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhch
Q 010356 318 KRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGY 397 (512)
Q Consensus 318 ~~~g~~~~~~~~~~~~~Hv~~g~V~~~~g~kmSkR~G~~v~l~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 397 (512)
+++|+.+ +....+.|+.||+|++++|+|||||+||+|+++||++++..++.+.+.++ ++|+++|+
T Consensus 295 ~~lg~~~---~~~~~~~h~~~glv~~~~g~KMSkR~Gn~i~l~dll~~a~g~~~~~~~~~------------~~a~~vgi 359 (507)
T PRK01611 295 KALGYDP---DALEVLLHQMVGLVRGGEGVKMSTRAGNVVTLDDLLDEAVGRARELIEEK------------EIAEAVGI 359 (507)
T ss_pred HHcCCCc---ccceEEEEEEEEeeECCCCCcccCCCCceeEHHHHHHHHHHHHHHHHHhh------------hhhhhhcc
Confidence 9999853 12245899999999999999999999999999999999999988888764 78999999
Q ss_pred hhHHHHhhccCCCCCccccccccccccCCchHHHHHHHHHHHHHHHhhcCChhhhhhcCCCCCCCHHHHHHHHHHHhhHH
Q 010356 398 GAAKYFDLKNNRLTNYTFSFDQMLNDKGNTAVYLLYAHARICSIIRKSGKDIEELKKTGSLVLDHADERALGLHLLHFSE 477 (512)
Q Consensus 398 ~airy~~L~~~~~~~~~Fd~~~~~~~~~~~g~ylqY~~aR~~sil~k~~~~~~~~~~~~~~~l~~~~e~~L~~~l~~~~~ 477 (512)
+|+||++|+.++.++++|||++++++++++++|+||+|+|+|||++|++..... ... ..+.++.|++|+..|.+||+
T Consensus 360 dAiR~~~L~~~~~~~~~Fd~~~~~~~~~~~~~yvqYa~aR~~sil~k~~~~~~~--~~~-~~l~~~~e~~Ll~~L~~~~~ 436 (507)
T PRK01611 360 DAVRYFDLSRSRDKDLDFDLDLALSFEGNNPPYVQYAHARICSILRKAAEAGID--LLL-ALLTEEEEKELIKKLAEFPE 436 (507)
T ss_pred ceeEehhhhcCCCCCCccCHHHHHhhcCCCcHHHHHHHHHHHHHHHhhhccCcc--ccc-cccCCHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999998532110 001 12447899999999999999
Q ss_pred HHHHHHHhcChHHHHHHHHHHHHHHhcchhccc
Q 010356 478 VIEEALTNLLPNVVCEYLYNLSEYFTRFYSNCQ 510 (512)
Q Consensus 478 ~v~~a~~~~~p~~l~~yl~~La~~fn~fY~~~~ 510 (512)
++.+|+++++||.+|+||++||+.||+||++||
T Consensus 437 ~v~~a~~~~~p~~l~~yl~~la~~f~~fY~~~~ 469 (507)
T PRK01611 437 VVESAAEELEPHRIANYLYELAGAFHSFYNRVL 469 (507)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHCC
Confidence 999999999999999999999999999999887
No 7
>KOG1195 consensus Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.4e-87 Score=677.87 Aligned_cols=476 Identities=32% Similarity=0.488 Sum_probs=426.7
Q ss_pred CChHHHHHHHHHhCCCCCCceeeEeccCCeEEEEeCHHHHHHHHHHHHH-cCCC-CCCCcCCCceEEEEeeCCCCCCCCc
Q 010356 24 KGPQPVGQAIMKNLPPSEMIESCSVAGPGFVNVVLSKNWMAKNIQKMLV-DGIE-TWAPKLRVKKAVVDFSSPNIAKEMH 101 (512)
Q Consensus 24 ~~p~~iA~~i~~~l~~~~~i~~v~~~g~GfiN~~l~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~v~Ve~~spNp~~~lH 101 (512)
..|.+.|.+.++.++....|+++...|| |++|+|++..+.+.+...+. +.+. |..+.+++++|+|||||||++||+|
T Consensus 48 ~~~~~~a~~~~e~~~~~~~v~~~~~~~~-~~~f~ln~~~~~k~~l~~i~~~~~~~g~~~~~~~k~iVVefSSPNIAK~FH 126 (567)
T KOG1195|consen 48 VQGKEDALRWAEALPCNRIVEEVGASGP-FVQFFLNRRRLIKSVLPIIEEQREKYGKNELGSGKKIVVEFSSPNIAKPFH 126 (567)
T ss_pred cCCHHHHHHHHHhcccccchHHHhcCCC-eEEEEecHHHHHHHHHHHHHHHhcccCccccccCceEEEEecCCCcccccc
Confidence 3455999999999998888999999997 99999999998888875554 4444 3333467899999999999999999
Q ss_pred ccchhhhhHHHHHHHHHHHCCCeEEEeeccCccchHHHHHHHHHHhhCCCCCccCcccHHHHHHHHHHHhcccCCChHHH
Q 010356 102 VGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQEFYRRSKNRFDSDPAFK 181 (512)
Q Consensus 102 vGH~R~~iiGD~lar~l~~~G~~V~~~~~i~D~G~qi~~l~~~~~~~~~~~~~~~~~~i~~l~~~y~~~~~~~~~~~~~~ 181 (512)
|||+|+++||.+++|+.+.+||+|+++||+||||+|||+++..+ .++++.+...-+||.+|.+.|+++++....+++..
T Consensus 127 vGhLRsTiiG~flanl~e~~G~~Vtr~NYLGDWGkQFgll~~g~-~~~g~e~~L~~~pI~hL~dvYVk~nk~~~~~~~~~ 205 (567)
T KOG1195|consen 127 VGHLRSTIIGNFLANLHEALGWEVTRVNYLGDWGKQFGLLALGF-QLYGDEEELQLNPIKHLFDVYVKINKDAEKDPDTA 205 (567)
T ss_pred cchhhhhhhhhHhhhhHHhhCCceeehhhhhHHHHHhhHHhccH-HhhCchhhhccchHHHHHHHHHHhhhhhhhCcchH
Confidence 99999999999999999999999999999999999999987554 55666454567999999999999998888788889
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHcCCeEe-eeccc-cccCchHHHHHHHHhCCCeeeeCceEEEE
Q 010356 182 ERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLE-EKGES-FYNPYIPGVIDELSKQGLVEESQGARVIF 259 (512)
Q Consensus 182 ~~~~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~L~I~f~-~~~es-~~~~~v~~~~~~L~~~g~~~~~dGa~~~~ 259 (512)
+.+++.+.+||.||.+++.+|++|++.++.++.++|+||||+|| |.+|| .+.+.++.+++.+++.|++.+.||+.||+
T Consensus 206 ~~are~f~rlE~~d~e~~k~Wqrfr~lsIe~l~~~Y~Rl~v~FD~y~gESqv~~e~~~~~~d~~rs~~l~~e~dG~~vid 285 (567)
T KOG1195|consen 206 EEAREFFKRLEDGDEEHLKLWQRFRDLSIEKLIKTYNRLNVKFDEYSGESQVSNEKMQEALDLLRSANLTEEIDGTIVID 285 (567)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHhhhhhHHHHHHHHHHhceeeeeccchHHHHHHHHHHHHHHHHhcCCcccCCCcEEEE
Confidence 99999999999999999999999999999999999999999996 78898 56788999999999999888999999999
Q ss_pred ecCCCC---CeEEEecCCccccccchHHHHHHHHhhcCCceEEEEeeCcccchHHHHHHHHHHcCCCCCCCCCCCceEEE
Q 010356 260 IEGVNI---PLIIVKSDGGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHV 336 (512)
Q Consensus 260 ~~g~~~---d~vl~ksDG~~~Y~~~DiA~~~~k~~~~~~d~~iyV~g~~q~~hf~~l~~~~~~~g~~~~~~~~~~~~~Hv 336 (512)
+++.++ ..++.||||+++|.|||||+++.|+.++.+|++|||++..|+.||.++|.+++++|+ +|+.+++||
T Consensus 286 L~~~~~~~~~~~V~ksdgttLYltRdiaaal~Rl~~y~fdr~iYVvd~~Q~~hf~~lf~ilk~mg~-----~~a~~~qHV 360 (567)
T KOG1195|consen 286 LSKIDKKAGKAVVQKSDGTTLYLTRDIAAALDRLEKYSFDRLIYVVDSQQKDHFCQLFEILKKMGF-----DWAKKLQHV 360 (567)
T ss_pred ecccCcccceEEEEcCCCceehHHHHHHHHHHHHHhcCcceEEEEechHHHHHHHHHHHHHHHhCc-----hhhhhccee
Confidence 985443 456889999999999999999999999999999999999999999999999999999 578999999
Q ss_pred EeEEEECCCCcceeeecCCeecHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhchhhHHHHhhccCCCCCcccc
Q 010356 337 GFGLVLGEDGKRLRTRFSEVVRLVDLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNRLTNYTFS 416 (512)
Q Consensus 337 ~~g~V~~~~g~kmSkR~G~~v~l~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~airy~~L~~~~~~~~~Fd 416 (512)
+||+|.+ ||||+|+++.++|+++++.+.|++.|....+. ....++.+++|+.+|++||++.+++..+.++|.|+
T Consensus 361 ~~G~v~G-----msTRkG~~~fl~dil~e~re~m~e~M~s~~t~-~~~~~~~~~vad~lg~sAviv~d~k~rr~s~yeF~ 434 (567)
T KOG1195|consen 361 NFGRVQG-----MSTRKGKVVFLDDILEEAREQMLEVMASNKTK-PVQMANPDEVADRLGLSAVIVQDFKGRRISNYEFS 434 (567)
T ss_pred ccccccc-----ccccCCceeeHHHHHHHHHHHHHHHHHhccCC-CCCCCCHHHHHHHHhhHHHHHHHHHHHhcccceEE
Confidence 9999874 99999999999999999999999999876332 55668889999999999999999999999999999
Q ss_pred ccccccccCCchHHHHHHHHHHHHHHHhhcC-ChhhhhhcCCCCCCCHHHHHHHHHHHhhHHHHHHHHHhcChHHHHHHH
Q 010356 417 FDQMLNDKGNTAVYLLYAHARICSIIRKSGK-DIEELKKTGSLVLDHADERALGLHLLHFSEVIEEALTNLLPNVVCEYL 495 (512)
Q Consensus 417 ~~~~~~~~~~~g~ylqY~~aR~~sil~k~~~-~~~~~~~~~~~~l~~~~e~~L~~~l~~~~~~v~~a~~~~~p~~l~~yl 495 (512)
|+.+.+++|+||+|+||+|+|+.|++||++. ..+.+...+++.+.+|....|+..|++||++++.++++++|+.++.||
T Consensus 435 w~~~~~~~gdtg~yLQY~HsRL~Slerk~~~~~~~~l~~~d~~~l~ep~~~~Lv~~L~~fp~vve~s~e~lE~~~lV~YL 514 (567)
T KOG1195|consen 435 WNRVLSFEGDTGPYLQYTHSRLRSLERKFSDVTLDDLDEIDFSLLTEPDALLLVRLLLQFPEVVEKSMEQLEPCTLVTYL 514 (567)
T ss_pred hhhhheecCCchHHHHHHHHHHHHHHHhccccCchhhhccchhhcCChhHHHHHHHHhhhHHHHHHHHHhhcchhHHHHH
Confidence 9999999999999999999999999999874 222233445566777887789999999999999999999999999999
Q ss_pred HHHHHHHhcchhcccCC
Q 010356 496 YNLSEYFTRFYSNCQVQ 512 (512)
Q Consensus 496 ~~La~~fn~fY~~~~vl 512 (512)
+.||++++++|..-+|+
T Consensus 515 ~~La~a~s~~yk~l~V~ 531 (567)
T KOG1195|consen 515 FKLAHAVSSAYKILWVK 531 (567)
T ss_pred HHHHHHHHhHHhheeec
Confidence 99999999999987774
No 8
>PF00750 tRNA-synt_1d: tRNA synthetases class I (R); InterPro: IPR015945 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the core region of arginyl-tRNA synthetase (6.1.1.19 from EC), which has been crystallized and preliminary X-ray crystallographic analysis of yeast arginyl-tRNA synthetase-yeast tRNAArg complexes is available []. ; GO: 0000166 nucleotide binding, 0004814 arginine-tRNA ligase activity, 0005524 ATP binding, 0006420 arginyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 2ZUE_A 2ZUF_A 3FNR_A 1IQ0_A 1F7V_A 1F7U_A 1BS2_A 3GDZ_B.
Probab=100.00 E-value=5.9e-75 Score=597.17 Aligned_cols=340 Identities=38% Similarity=0.584 Sum_probs=280.7
Q ss_pred HHHHHHcCCCCCCCcCCCceEEEEeeCCCCCCCCcccchhhhhHHHHHHHHHHHCCCeEEEeeccCccchHHHHHHHHHH
Q 010356 67 IQKMLVDGIETWAPKLRVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLF 146 (512)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~v~Ve~~spNp~~~lHvGH~R~~iiGD~lar~l~~~G~~V~~~~~i~D~G~qi~~l~~~~~ 146 (512)
|.+++.+++.+....+++++|+||||||||+|||||||+||++|||+|||+|+++||+|+++||+||||+||++++.++.
T Consensus 2 i~~il~~~~~y~~~~~~~~kv~VE~sSpNp~kplHvGHlR~~iiGd~laril~~~G~~V~r~nyigD~G~Q~~~l~~~~~ 81 (354)
T PF00750_consen 2 INEILEKGEEYGSEKGKGKKVVVEFSSPNPTKPLHVGHLRNTIIGDSLARILEAAGYDVTRENYIGDWGTQIGLLAASYK 81 (354)
T ss_dssp HHHHHHHGGGTT--TTTSEEEEEEE---BTTSS-BHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEBTTSHHHHHHHHHHH
T ss_pred HHHHHhcchhcccccCCCCEEEEEecCCCCCCCCcCCcchhhhhhHHHHHHHHHcCCeeeeEEEECCCCHHHHHHHHHHH
Confidence 45677767664333467999999999999999999999999999999999999999999999999999999999987765
Q ss_pred hhCCCCCccCcccHHHHHHHHHHHhcccCC-------ChHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHH
Q 010356 147 EKFPNSEDANETAIGELQEFYRRSKNRFDS-------DPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKR 219 (512)
Q Consensus 147 ~~~~~~~~~~~~~i~~l~~~y~~~~~~~~~-------~~~~~~~~~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~ 219 (512)
....+.. ...+++.++.+.|...+..... .+.+.+++++.+.++|+|+++..+.|+. .+++..+++|++
T Consensus 82 ~~~~~~~-~~~~~~~~l~~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~~~~---~~~~~~k~~l~~ 157 (354)
T PF00750_consen 82 KFGDEEL-LEEDPIKHLEDLYVGANKRDEADEIAEKEPEELEEEAREYLKKLEQGDEEFRELWQK---YILEWSKETLQR 157 (354)
T ss_dssp HHHHHHT-SHSSCHHHHHHHHHHHHHHHHHTTCSSGCCCCHHHHHHHHHHHHHHCCTTHHHHHHH---HHHHHHHHHHHH
T ss_pred hhhhhhh-cccccccchhhhhhhhhhhhhhhhhccccccccccccceeeeecccccHHHHHHHHH---HHHHHHHHHHHH
Confidence 3322111 1346788888888876543221 2348899999999999999999999977 134455668889
Q ss_pred cCCeEe-ee--ccccccCchHHHHHHHHhCCCeeeeCceEEEEec--CCCCCeEEEecCCccccccchHHHHHHHHhhcC
Q 010356 220 LRVDLE-EK--GESFYNPYIPGVIDELSKQGLVEESQGARVIFIE--GVNIPLIIVKSDGGFNYASTDLAALWYRLNEEK 294 (512)
Q Consensus 220 L~I~f~-~~--~es~~~~~v~~~~~~L~~~g~~~~~dGa~~~~~~--g~~~d~vl~ksDG~~~Y~~~DiA~~~~k~~~~~ 294 (512)
|+|.|| |+ +||.+.+.+++++++|+++|+++++||++|++++ |+++|+||+||||++||+|+|||||++|++.++
T Consensus 158 l~i~fDv~~~E~Es~~~~~v~~vl~~L~e~g~~~~~dGa~~i~~~~~g~~k~~Vl~ksDGt~~Y~trDiA~~~~r~~~~~ 237 (354)
T PF00750_consen 158 LYIRFDVWFDESESFYSGKVDEVLERLKEKGLLYESDGALWIDLTKFGDDKDRVLRKSDGTSTYLTRDIAYHLYRFEEYG 237 (354)
T ss_dssp TT---SEEEEHCHHHHTTHHHHHHHHHHCTTTEEEETTEEEEEGCCTSTSS-EEEEETTSEB-HHHHHHHHHHHHHCCSS
T ss_pred HHHHhCcCcccchhhhhhHHHHHHHHHHhCCcEEecCCcEEEechhcCCCCcceEEcCCCceEEEcchHHHHHHHHhhhc
Confidence 999985 55 6788899999999999999999999999999998 788899999999999999999999999998899
Q ss_pred CceEEEEeeCcccchHHHHHHHHHHcCCCCCCCCCCCceEEEEeEEEECCCCc-ceeeecCCeecHHHHHHHHHHHHHHH
Q 010356 295 AEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGK-RLRTRFSEVVRLVDLLDEAKNRSKAV 373 (512)
Q Consensus 295 ~d~~iyV~g~~q~~hf~~l~~~~~~~g~~~~~~~~~~~~~Hv~~g~V~~~~g~-kmSkR~G~~v~l~dll~~~~~~~~~~ 373 (512)
+|++|||||.+|++||+|++++++++|+.+ .+.++.|++||+|++++|+ |||||+|++|+++|||+++.++|.+
T Consensus 238 ~d~~iyV~~~~q~~hf~~l~~~l~~lg~~~----~~~~~~H~~~g~vl~~~gk~~mstR~G~~i~l~dllde~~~~a~~- 312 (354)
T PF00750_consen 238 FDKIIYVVGADQKGHFKQLFAILEALGYDP----EAVKLQHVSFGVVLLKDGKVKMSTRKGNVITLDDLLDEAVERALE- 312 (354)
T ss_dssp -SEEEEEEEGGGHHHHHHHHHHHHHTT-HH----HHCTEEEEEE-EEEETTBEESS-TTTTSSTBHHHHHHHHHHHHHH-
T ss_pred cccEEEEecCchhhHHHHHHHHHHHhCCCC----CCCEEEEEEEEEEEcCCCCccccCCCCCceEHHHHHHHHHHHHHH-
Confidence 999999999999999999999999999843 3678999999999999997 9999999999999999999999999
Q ss_pred HHHhcCCCCCCHHHHHHHHHhhchhhHHHHhhccCCCCCccccc
Q 010356 374 LIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNRLTNYTFSF 417 (512)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~a~~~~~~airy~~L~~~~~~~~~Fd~ 417 (512)
+.++.+ ++++++.+++|+++|++||||++|+.++.++|+|||
T Consensus 313 ~~~~~~--~~~~~~~~~~a~~vg~~Ai~y~~l~~~~~~~~~Fdw 354 (354)
T PF00750_consen 313 IMEKNP--DLSEEEREEIAEQVGVGAIRYFDLSQKRNKDYVFDW 354 (354)
T ss_dssp HHHHHT--TCTHCHHHHHHHHHHHHHHHHHHHSS-TTS-EEEEC
T ss_pred HHhccc--CCChhhHHHHHHHhhhhHHHHHHHhccCCCCceecC
Confidence 666533 389999999999999999999999999999999998
No 9
>cd00671 ArgRS_core catalytic core domain of arginyl-tRNA synthetases. Arginyl tRNA synthetase (ArgRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. There are at least three subgroups of ArgRS. One type contains both characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The second subtype lacks the KMSKS motif; however, it has a lysine N-terminal to the HIGH motif, which serves as the functional counterpart to the second lysine of the KMSKS motif. A third group, which is found primarily in archaea and a few bacteria, lacks both the KMSKS motif and the HIGH loop lysine.
Probab=100.00 E-value=1.6e-53 Score=408.97 Aligned_cols=209 Identities=36% Similarity=0.551 Sum_probs=192.8
Q ss_pred eEEEEeeCCCCCCCCcccchhhhhHHHHHHHHHHHCCCeEEEeeccCccchHHHHHHHHHHhhCCCCCccCcccHHHHHH
Q 010356 86 KAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQE 165 (512)
Q Consensus 86 ~v~Ve~~spNp~~~lHvGH~R~~iiGD~lar~l~~~G~~V~~~~~i~D~G~qi~~l~~~~~~~~~~~~~~~~~~i~~l~~ 165 (512)
+|+||||||||+||+||||+||+++||+|+|+|+++||+|+++||+||||.||++++...
T Consensus 1 ~v~ve~~spN~~~~~HiGH~R~~vigD~l~R~l~~~G~~V~~~~~~~D~G~qi~~~a~~~-------------------- 60 (212)
T cd00671 1 KILVEFVSANPTGPLHVGHLRNAIIGDSLARILEFLGYDVTREYYINDWGRQIGLLILSL-------------------- 60 (212)
T ss_pred CeEEEecCCCCCCCccccccHHHHHHHHHHHHHHHCCCcEEEEeccCCcHHHHHHHHHHH--------------------
Confidence 589999999999999999999999999999999999999999999999999998764221
Q ss_pred HHHHHhcccCCChHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHcCCeEe-eeccccccCchHHHHHHHH
Q 010356 166 FYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLE-EKGESFYNPYIPGVIDELS 244 (512)
Q Consensus 166 ~y~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~L~I~f~-~~~es~~~~~v~~~~~~L~ 244 (512)
..|+++++.+.+.|+++|++|||.|| |.+||.+.+.+.++++.|+
T Consensus 61 ----------------------------------~~~~~~~~~~~~~~~~~~~~L~i~~d~~~~es~~~~~~~~~i~~L~ 106 (212)
T cd00671 61 ----------------------------------EKWRKLVEESIKADLETYGRLDVRFDVWFGESSYLGLMGKVVELLE 106 (212)
T ss_pred ----------------------------------HHHHHHHHHHHHHHHHHHHHhCCcCceecchhhhhhHHHHHHHHHH
Confidence 12788999999999999999999996 7788888889999999999
Q ss_pred hCCCeeeeCceEEEEec--CCCCCeEEEecCCccccccchHHHHHHHHhhcCCceEEEEeeCcccchHHHHHHHHHHcCC
Q 010356 245 KQGLVEESQGARVIFIE--GVNIPLIIVKSDGGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGW 322 (512)
Q Consensus 245 ~~g~~~~~dGa~~~~~~--g~~~d~vl~ksDG~~~Y~~~DiA~~~~k~~~~~~d~~iyV~g~~q~~hf~~l~~~~~~~g~ 322 (512)
++|++|+.+|++|++++ ++.+|+||+||||+++|.++|||++++|+. +++|++|||+|++|..||++++.+++++|+
T Consensus 107 ~~g~~~~~~g~~~~~~~~~~~~~d~vl~rsdG~~~Y~~~DlA~~~~~~~-~~~~~~i~v~g~~~~~~~~~~~~~~~~lg~ 185 (212)
T cd00671 107 ELGLLYEEDGALWLDLTEFGDDKDRVLVRSDGTYTYFTRDIAYHLDKFE-RGADKIIYVVGADHHGHFKRLFAALELLGY 185 (212)
T ss_pred HCCCEEEeCCcEEEechhhCCCCCeEEEECCCCccchHHHHHHHHHHHh-cCCCEEEEEECCCHHHHHHHHHHHHHHcCC
Confidence 99999999999999987 345799999999999999999999999995 899999999999999999999999999998
Q ss_pred CCCCCCCCCceEEEEeEEEECCCCcceeeecC
Q 010356 323 LSADDSTYPKASHVGFGLVLGEDGKRLRTRFS 354 (512)
Q Consensus 323 ~~~~~~~~~~~~Hv~~g~V~~~~g~kmSkR~G 354 (512)
. +++++.|++||+|++++|+|||||+|
T Consensus 186 ~-----~~~~~~h~~~~~v~~~~~~kmS~R~G 212 (212)
T cd00671 186 D-----EAKKLEHLLYGMVNLPKEGKMSTRAG 212 (212)
T ss_pred C-----CCCCeEEEEEEeEEcCCCCCCCCCCC
Confidence 4 35789999999999888999999997
No 10
>PTZ00399 cysteinyl-tRNA-synthetase; Provisional
Probab=100.00 E-value=3.1e-39 Score=352.96 Aligned_cols=327 Identities=16% Similarity=0.149 Sum_probs=257.5
Q ss_pred CCCceEEEEeeCCCCCCCCcccchhhhhHHHHHHHHHH-HCCCeEEEeeccCccchHHHHHHHHHHhhCCCCCccCcccH
Q 010356 82 LRVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLE-FSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAI 160 (512)
Q Consensus 82 ~~~~~v~Ve~~spNp~~~lHvGH~R~~iiGD~lar~l~-~~G~~V~~~~~i~D~G~qi~~l~~~~~~~~~~~~~~~~~~i 160 (512)
..+.+|.++.|+|+|++++||||+|++|..|+|+|+|+ +.||+|.++.+++|+|-
T Consensus 56 ~~~~~v~~Y~CGPTvYd~~HiGhart~v~~Dil~R~l~~~~Gy~V~~v~nitDidD------------------------ 111 (651)
T PTZ00399 56 QNGRQVRWYTCGPTVYDSSHLGHARTYVTFDIIRRILEDYFGYDVFYVMNITDIDD------------------------ 111 (651)
T ss_pred CCCCeeEEEEeCCCccCCcccccchHHHHHHHHHHHHHHhcCCceEEEeCCCCcch------------------------
Confidence 35678999999999999999999999999999999999 99999999999999643
Q ss_pred HHHHHHHHHHhcccCCChHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHcCCeE-eeecc-ccccCchHH
Q 010356 161 GELQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDL-EEKGE-SFYNPYIPG 238 (512)
Q Consensus 161 ~~l~~~y~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~L~I~f-~~~~e-s~~~~~v~~ 238 (512)
+|..+|.+..- ..|+++++.+.+.|.+++++|||.+ +..+. +.|.+.|.+
T Consensus 112 ----KIi~~A~~~g~------------------------~~~~el~~~~~~~f~~d~~~Lni~~p~~~~r~tehi~~ii~ 163 (651)
T PTZ00399 112 ----KIIKRAREEKL------------------------SIFLELARKWEKEFFEDMKALNVRPPDVITRVSEYVPEIVD 163 (651)
T ss_pred ----HHHHHHHHhCC------------------------CcHHHHHHHHHHHHHHHHHHcCCCCCccccCcCccHHHHHH
Confidence 44444443211 1146788899999999999999998 65544 888899999
Q ss_pred HHHHHHhCCCeeeeCceEEEEecCC-------------------------------------CCCeEEEec--CCccccc
Q 010356 239 VIDELSKQGLVEESQGARVIFIEGV-------------------------------------NIPLIIVKS--DGGFNYA 279 (512)
Q Consensus 239 ~~~~L~~~g~~~~~dGa~~~~~~g~-------------------------------------~~d~vl~ks--DG~~~Y~ 279 (512)
+++.|+++|++|+.+|.|||+++.. ..|++|||. .|.|.|.
T Consensus 164 ~i~~Li~~G~aY~~~gsvyFd~~~f~~~~~~Yg~L~p~~~~~~~~~~~g~~~l~~~~~~Kr~~~DFaLWk~~kpgep~W~ 243 (651)
T PTZ00399 164 FIQKIIDNGFAYESNGSVYFDVEAFRKAGHVYPKLEPESVADEDRIAEGEGALGKVSGEKRSPNDFALWKASKPGEPSWD 243 (651)
T ss_pred HHHHHHHCCCEEEECCeEEEEchhcccchhhHHhhChhhcCCHHHHhcccCCccccCcCCCCCccHHhhCCCCCCCCCCC
Confidence 9999999999999999999977410 124555653 4556666
Q ss_pred cch----HHHHHHHH----hhcCCceEEEEeeCcccchHHHH---HHHHHH-cCCCCCCCCCCCceEEEEeEEEECCCCc
Q 010356 280 STD----LAALWYRL----NEEKAEWIIYVTDVGQQLHFDMV---FSAAKR-AGWLSADDSTYPKASHVGFGLVLGEDGK 347 (512)
Q Consensus 280 ~~D----iA~~~~k~----~~~~~d~~iyV~g~~q~~hf~~l---~~~~~~-~g~~~~~~~~~~~~~Hv~~g~V~~~~g~ 347 (512)
++. .+||+.+. ...+ ..++|++++.++.||+. .+..++ .|- .+|+..|+|. |+|. .+|+
T Consensus 244 SpwG~GrPGWHiECsam~~~~lg--~~~DIh~gG~DL~FPHHeNEiAQseA~~~~----~~~v~y~~H~--G~L~-i~G~ 314 (651)
T PTZ00399 244 SPWGKGRPGWHIECSAMASNILG--DPIDIHSGGIDLKFPHHDNELAQSEAYFDK----HQWVNYFLHS--GHLH-IKGL 314 (651)
T ss_pred CCCCCCCCCchHHHHHHHHHHcC--CcceeeccCCCCCCCcchhHHHHHHHhhCC----CCCCcEEEEE--EEEE-eccc
Confidence 643 33444321 1122 35789999999988863 233333 333 2678899999 5576 5789
Q ss_pred ceeeecCCeecHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhchhhHHHHhhccCCCCCccccccccccccCCc
Q 010356 348 RLRTRFSEVVRLVDLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNRLTNYTFSFDQMLNDKGNT 427 (512)
Q Consensus 348 kmSkR~G~~v~l~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~airy~~L~~~~~~~~~Fd~~~~~~~~~~~ 427 (512)
|||||+||+|++.|+|++ +|++++||++|+.+++++++||++.+.+..+..
T Consensus 315 KMSKSLGNfItp~dlLek-----------------------------ygaDaLR~~lLs~~~~~dldFS~e~l~~a~~~~ 365 (651)
T PTZ00399 315 KMSKSLKNFITIRQALSK-----------------------------YTARQIRLLFLLHKWDKPMNYSDESMDEAIEKD 365 (651)
T ss_pred hhhhcCCCcccHHHHHHH-----------------------------cChHHHHHHHHhcCCCCCCccCHHHHHHHHHHH
Confidence 999999999999999998 799999999999999999999999988776666
Q ss_pred hHHHHHHHHHHHHHHHhhcCChhhhhhcCCCCCCCHHHHHHHHHHHhhHHHHHHHH-HhcChHHHHHHHHHHHHHHhcch
Q 010356 428 AVYLLYAHARICSIIRKSGKDIEELKKTGSLVLDHADERALGLHLLHFSEVIEEAL-TNLLPNVVCEYLYNLSEYFTRFY 506 (512)
Q Consensus 428 g~ylqY~~aR~~sil~k~~~~~~~~~~~~~~~l~~~~e~~L~~~l~~~~~~v~~a~-~~~~p~~l~~yl~~La~~fn~fY 506 (512)
..+.+| ++|+++++++.... . ...+ ++.+++|+..+..+++.+.+|+ ++++|+.++.+|++|+..+|+||
T Consensus 366 ~~l~n~-~~rl~s~l~~~~~~-----~--~~~~-~~~d~~Ll~~l~~~~~~v~~Am~Ddfnt~~Al~~L~eLv~~~N~yi 436 (651)
T PTZ00399 366 KVFFNF-FANVKIKLRESELT-----S--PQKW-TQHDFELNELFEETKSAVHAALLDNFDTPEALQALQKLISATNTYL 436 (651)
T ss_pred HHHHHH-HHHHHHHHhhcccc-----c--cccC-CHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHH
Confidence 667777 89999988764311 0 1112 4667889999999999999998 77999999999999999999999
Q ss_pred h
Q 010356 507 S 507 (512)
Q Consensus 507 ~ 507 (512)
+
T Consensus 437 ~ 437 (651)
T PTZ00399 437 N 437 (651)
T ss_pred h
Confidence 6
No 11
>PLN02946 cysteine-tRNA ligase
Probab=100.00 E-value=1.6e-38 Score=337.82 Aligned_cols=323 Identities=15% Similarity=0.077 Sum_probs=248.3
Q ss_pred CCceEEEEeeCCCCCCCCcccchhhhhHHHHHHHHHHHCCCeEEEeeccCccchHHHHHHHHHHhhCCCCCccCcccHHH
Q 010356 83 RVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGE 162 (512)
Q Consensus 83 ~~~~v~Ve~~spNp~~~lHvGH~R~~iiGD~lar~l~~~G~~V~~~~~i~D~G~qi~~l~~~~~~~~~~~~~~~~~~i~~ 162 (512)
.+.+|.++.|+|+|++++||||+|++|..|+|+|+|++.||+|.++.+++|+|..|
T Consensus 77 ~~~~v~~Y~CGpTvYd~~HIGhaR~~V~~Dvl~R~Lr~~Gy~V~~V~niTDiDDKI------------------------ 132 (557)
T PLN02946 77 VEGKVGMYVCGVTAYDLSHIGHARVYVTFDVLYRYLKHLGYEVRYVRNFTDVDDKI------------------------ 132 (557)
T ss_pred CCCceeEEEeCCccCCCCccccchhhHHHHHHHHHHHhcCCcEEEEECCCCccCHH------------------------
Confidence 46789999999999999999999999999999999999999999999999965433
Q ss_pred HHHHHHHHhcccCCChHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHcCCeE-eeec-cccccCchHHHH
Q 010356 163 LQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDL-EEKG-ESFYNPYIPGVI 240 (512)
Q Consensus 163 l~~~y~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~L~I~f-~~~~-es~~~~~v~~~~ 240 (512)
..+|.+. +. .|+++++.+.+.|.+++++|||.. +..+ .+.|.+.+.+++
T Consensus 133 ----i~~A~~~-g~------------------------~~~ela~~y~~~f~~d~~~LnI~~p~~~pratehi~~ii~~i 183 (557)
T PLN02946 133 ----IARANEL-GE------------------------DPISLSRRYCEEFLSDMAYLHCLPPSVEPRVSDHIPQIIDMI 183 (557)
T ss_pred ----HHHHHHc-CC------------------------CHHHHHHHHHHHHHHHHHHCCCCCCCeecCcchhHHHHHHHH
Confidence 3333321 11 236788999999999999999985 4444 488899999999
Q ss_pred HHHHhCCCeeeeCceEEEEec------------------C----------CCCCeEEEec--CCccccccch----HHHH
Q 010356 241 DELSKQGLVEESQGARVIFIE------------------G----------VNIPLIIVKS--DGGFNYASTD----LAAL 286 (512)
Q Consensus 241 ~~L~~~g~~~~~dGa~~~~~~------------------g----------~~~d~vl~ks--DG~~~Y~~~D----iA~~ 286 (512)
++|+++|++|+.+|.+||++. | +..|++|||. .|.+.|.+++ .+||
T Consensus 184 ~~Li~kG~aY~~~g~VYFdv~~f~~YG~Ls~~~l~~l~~g~rv~~~~~K~np~DFaLWK~~k~ge~~W~SPWG~GRPGWH 263 (557)
T PLN02946 184 KQILDNGCAYRVDGDVYFSVDKFPEYGKLSGRKLEDNRAGERVAVDSRKKNPADFALWKAAKEGEPFWDSPWGPGRPGWH 263 (557)
T ss_pred HHHHHCCCEEEECCeEEEecCcchhhhhcCCCChhHhhcCCCCCcccccCCccccceeccCCCCCCCccCCCCCCCCcHH
Confidence 999999999999999999875 1 1247999985 6778888876 5777
Q ss_pred HHHH--hhcCCceEEEEeeCcccchHHHH---HHHHHH-cCCCCCCCCCCCceEEEEeEEEECCCCcceeeecCCeecHH
Q 010356 287 WYRL--NEEKAEWIIYVTDVGQQLHFDMV---FSAAKR-AGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLV 360 (512)
Q Consensus 287 ~~k~--~~~~~d~~iyV~g~~q~~hf~~l---~~~~~~-~g~~~~~~~~~~~~~Hv~~g~V~~~~g~kmSkR~G~~v~l~ 360 (512)
+.+- ..-.....++|+|++.++.||+. .+..++ .|. +++..|+|. |+|+ .+|+|||||+||+++++
T Consensus 264 IECSaMs~~~lG~~~DIH~GG~DL~FPHHENEiAQsea~~g~-----~~a~yW~H~--G~v~-~~G~KMSKSlGN~itl~ 335 (557)
T PLN02946 264 IECSAMSAAYLGHSFDIHGGGMDLVFPHHENEIAQSCAACCD-----SNISYWIHN--GFVT-VDSEKMSKSLGNFFTIR 335 (557)
T ss_pred HHHHHHHHHHcCCCeeEeccccccCCCcccchHHHHHHHhCC-----CCCceeeEe--eEEE-eCCCCcCCcCCCcCCHH
Confidence 7652 11223456899999999988854 233343 343 578899996 8888 68999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhchhhHHHHhhccCCCCCccccccccccccCCchHHHHHHHHHHHH
Q 010356 361 DLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNRLTNYTFSFDQMLNDKGNTAVYLLYAHARICS 440 (512)
Q Consensus 361 dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~airy~~L~~~~~~~~~Fd~~~~~~~~~~~g~ylqY~~aR~~s 440 (512)
|++++ ++++++|||+|+.+++++++|+++.+... .+.-.|++|+++|+++
T Consensus 336 dll~~-----------------------------y~~dalR~~lLs~hyr~~l~fs~e~L~~a-~~~l~~l~~~~~~~~~ 385 (557)
T PLN02946 336 QVIDL-----------------------------YHPLALRLFLLGTHYRSPINYSDVQLESA-SERIFYIYQTLHDCEE 385 (557)
T ss_pred HHHHh-----------------------------cCccceeeeeeccCCCCCcEecHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 99998 79999999999999999999999986544 3344589999999999
Q ss_pred HHHhhcCChhhhhhcCCCCCCCHHHHHHHHHHHhhHHHHHHHHH-hcChHHHHHHHHHHHHHHhcch
Q 010356 441 IIRKSGKDIEELKKTGSLVLDHADERALGLHLLHFSEVIEEALT-NLLPNVVCEYLYNLSEYFTRFY 506 (512)
Q Consensus 441 il~k~~~~~~~~~~~~~~~l~~~~e~~L~~~l~~~~~~v~~a~~-~~~p~~l~~yl~~La~~fn~fY 506 (512)
++++...... . .. .+ ..+...+..+.+.+.+|++ .++-..++..|++++...|++.
T Consensus 386 ~l~~~~~~~~---~---~~--~~--~~~~~~~~~~~~~f~~Al~DDlntp~Al~~l~~~vk~~N~~~ 442 (557)
T PLN02946 386 SLQQHDSTFE---K---DS--VP--PDTLNCINKFHDEFVTSMSDDLHTPVALAALSEPLKTINDLL 442 (557)
T ss_pred Hhhhhccccc---c---cc--cc--hhhHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHh
Confidence 8875321100 0 00 00 1122233445556666664 5788888888888888888765
No 12
>COG0215 CysS Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=8.4e-38 Score=320.87 Aligned_cols=267 Identities=17% Similarity=0.181 Sum_probs=217.1
Q ss_pred CCceEEEEeeCCCCCCCCcccchhhhhHHHHHHHHHHHCCCeEEEeeccCccchHHHHHHHHHHhhCCCCCccCcccHHH
Q 010356 83 RVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGE 162 (512)
Q Consensus 83 ~~~~v~Ve~~spNp~~~lHvGH~R~~iiGD~lar~l~~~G~~V~~~~~i~D~G~qi~~l~~~~~~~~~~~~~~~~~~i~~ 162 (512)
.+.+|.++.|+|+|+...||||+|++|..|+|.|+|++.||.|.++.+|+|. +|
T Consensus 19 ~~~~V~mYvCGpTVYd~~HIGhaRt~V~fDvl~R~L~~~Gy~V~yV~NiTDI----------------------DD---- 72 (464)
T COG0215 19 DPGKVKMYVCGPTVYDYAHIGHARTYVVFDVLRRYLRYLGYKVTYVRNITDI----------------------DD---- 72 (464)
T ss_pred CCCeEEEEecCCccCCccccccCcceehHHHHHHHHHHhCCeEEEEeccccc----------------------cH----
Confidence 4556999999999999999999999999999999999999999999999993 34
Q ss_pred HHHHHHHHhcccCCChHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHcCCeE-eeecc-ccccCchHHHH
Q 010356 163 LQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDL-EEKGE-SFYNPYIPGVI 240 (512)
Q Consensus 163 l~~~y~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~L~I~f-~~~~e-s~~~~~v~~~~ 240 (512)
||+.+|.+.. ..|+++++.+.+.|.++++.|||.. +.++. +.|.+.|.++|
T Consensus 73 --KIi~rA~~~g-------------------------~~~~ev~~~~i~~f~~D~~aL~v~~p~~~PraTe~I~~iI~~I 125 (464)
T COG0215 73 --KIINRAREEG-------------------------LSIREVAERYIAAFFEDMDALNVLPPDIEPRATEHIDEIIEFI 125 (464)
T ss_pred --HHHHHHHHhC-------------------------CCHHHHHHHHHHHHHHHHHHhCCCCCcccCcHhhCHHHHHHHH
Confidence 5566666421 1467889999999999999999975 87776 88999999999
Q ss_pred HHHHhCCCeeee-CceEEEEec---------C--------------------CCCCeEEEec--CCccccccch----HH
Q 010356 241 DELSKQGLVEES-QGARVIFIE---------G--------------------VNIPLIIVKS--DGGFNYASTD----LA 284 (512)
Q Consensus 241 ~~L~~~g~~~~~-dGa~~~~~~---------g--------------------~~~d~vl~ks--DG~~~Y~~~D----iA 284 (512)
++|+++|++|+. +|.|||++. + +..|+||||+ .|.|.|.+++ .+
T Consensus 126 ~~LiekG~AY~~~~G~VYFdv~~f~~YG~LS~~~~le~l~~gar~~~~~~Krnp~DFvLWK~sk~gEp~W~SPWG~GRPG 205 (464)
T COG0215 126 EKLIEKGYAYVADDGDVYFDVSKFKDYGKLSGRDSLEELQAGARVEVDEEKRNPLDFVLWKAAKPGEPSWDSPWGKGRPG 205 (464)
T ss_pred HHHHHCCceEEecCCcEEEecccchhhHhhcCCCChhHHhhccccccccccCCchhheeeccCCCCCCCCCCCCCCCCCc
Confidence 999999999997 789999874 1 1248999996 6889999886 57
Q ss_pred HHHHHH--hhcCCceEEEEeeCcccchHHHH---HHHHHHcCCCCCCCCCCCceEEEEeEEEECCCCcceeeecCCeecH
Q 010356 285 ALWYRL--NEEKAEWIIYVTDVGQQLHFDMV---FSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRL 359 (512)
Q Consensus 285 ~~~~k~--~~~~~d~~iyV~g~~q~~hf~~l---~~~~~~~g~~~~~~~~~~~~~Hv~~g~V~~~~g~kmSkR~G~~v~l 359 (512)
||+.+- .....+..++|+|++.++-||+. .+..+++.-. ++|+..|+|. |||. -+|+|||||.||++++
T Consensus 206 WHIECSaM~~~~LG~~~DIHgGG~DLiFPHHENEiAQsea~~g~---~~~a~yWmH~--G~l~-i~geKMSKSLGNfiti 279 (464)
T COG0215 206 WHIECSAMSTKYLGETFDIHGGGSDLIFPHHENEIAQSEAATGV---KPFAKYWMHN--GFLN-IDGEKMSKSLGNFITV 279 (464)
T ss_pred hhHHHHHHHHHHhCCCcceecCcccccCCCcccHHHHHHhhhCC---CcceeEeEEc--ceee-ecCcCcccccCCeeEH
Confidence 787662 22234566899999999988853 2333443221 2689999999 7787 6899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhchhhHHHHhhccCCCCCccccccccccccCCchHHHHHHHHHHH
Q 010356 360 VDLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNRLTNYTFSFDQMLNDKGNTAVYLLYAHARIC 439 (512)
Q Consensus 360 ~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~airy~~L~~~~~~~~~Fd~~~~~~~~~~~g~ylqY~~aR~~ 439 (512)
.|+|++ +++.++||++|+.+++++++|+.+.+.+... ++.|+.
T Consensus 280 ~d~l~~-----------------------------~~p~~lR~~lls~HYR~pl~fsee~L~~A~~--------~l~rl~ 322 (464)
T COG0215 280 RDLLKK-----------------------------YDPEVLRLFLLSSHYRSPLDFSEELLEEAKK--------ALERLY 322 (464)
T ss_pred HHHHhh-----------------------------cCHHHHHHHHHHHHhCCccccCHHHHHHHHH--------HHHHHH
Confidence 999998 7899999999999999999999998765432 345565
Q ss_pred HHHHhh
Q 010356 440 SIIRKS 445 (512)
Q Consensus 440 sil~k~ 445 (512)
..+++.
T Consensus 323 ~~~~~~ 328 (464)
T COG0215 323 NALRRL 328 (464)
T ss_pred HHHHHH
Confidence 555543
No 13
>PRK00260 cysS cysteinyl-tRNA synthetase; Validated
Probab=100.00 E-value=1.6e-36 Score=322.57 Aligned_cols=314 Identities=19% Similarity=0.216 Sum_probs=243.4
Q ss_pred CCceEEEEeeCCCCCCCCcccchhhhhHHHHHHHHHHHCCCeEEEeeccCccchHHHHHHHHHHhhCCCCCccCcccHHH
Q 010356 83 RVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGE 162 (512)
Q Consensus 83 ~~~~v~Ve~~spNp~~~lHvGH~R~~iiGD~lar~l~~~G~~V~~~~~i~D~G~qi~~l~~~~~~~~~~~~~~~~~~i~~ 162 (512)
.+++|.++.|+|+|+|++||||+|+++++|+|+|+||+.||+|.++.+++|+|..+.
T Consensus 20 ~~~~v~~yvcgPtvy~~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~tD~ddki~----------------------- 76 (463)
T PRK00260 20 EPGKVKMYVCGPTVYDYAHIGHARSFVVFDVLRRYLRYLGYKVTYVRNITDIDDKII----------------------- 76 (463)
T ss_pred CCCcceEEEeCCccCCCcccccchhHHHHHHHHHHHHhcCCceEEeecCCCCcHHHH-----------------------
Confidence 457799999999999999999999999999999999999999999999999765442
Q ss_pred HHHHHHHHhcccCCChHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHcCCeE-eeecc-ccccCchHHHH
Q 010356 163 LQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDL-EEKGE-SFYNPYIPGVI 240 (512)
Q Consensus 163 l~~~y~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~L~I~f-~~~~e-s~~~~~v~~~~ 240 (512)
.++.+. | ..|+++++.+.+.|.+++++|||.+ ++++. +.|.+.+.+++
T Consensus 77 -----~~A~~~--------------------g-----~~~~e~~~~~~~~f~~~~~~Lgi~~~d~~~r~t~~~~~~~~~i 126 (463)
T PRK00260 77 -----KRANEE--------------------G-----ESIKELTERYIAAFHEDMDALNVLPPDIEPRATEHIPEIIELI 126 (463)
T ss_pred -----HHHHHc--------------------C-----CCHHHHHHHHHHHHHHHHHHcCCCCCCccccccccHHHHHHHH
Confidence 122211 1 2357789999999999999999965 77654 77888899999
Q ss_pred HHHHhCCCeeeeCceEEEEec-----C-----------------------CCCCeEEEec--CCccccccch----HHHH
Q 010356 241 DELSKQGLVEESQGARVIFIE-----G-----------------------VNIPLIIVKS--DGGFNYASTD----LAAL 286 (512)
Q Consensus 241 ~~L~~~g~~~~~dGa~~~~~~-----g-----------------------~~~d~vl~ks--DG~~~Y~~~D----iA~~ 286 (512)
++|.++|++|+.+|.++|+++ | +..|++|||. .|.+.|.++. .+||
T Consensus 127 ~~L~~kG~aY~~~~~Vyfdv~~~~~yg~ls~~~~~~~~~~~~~~~~~~K~~~~DF~Lwk~~~~~~~~w~s~~g~grpgWh 206 (463)
T PRK00260 127 ERLIDKGHAYEADGDVYFDVRKFPDYGKLSGRNLDELQAGARVEVAEEKRDPLDFALWKAAKPGEPSWESPWGKGRPGWH 206 (463)
T ss_pred HHHHHCCCEEEecCeEEEecccccccccCCCCCHHHHhccCcCCcccCCCCccccceecCCCCCCCCCCCCCCCCCCChh
Confidence 999999999999999999874 1 1248999986 5777777654 4455
Q ss_pred HHHH--hhcCCceEEEEeeCcccchHHHHH-HHHH---HcCCCCCCCCCCCceEEEEeEEEECCCCcceeeecCCeecHH
Q 010356 287 WYRL--NEEKAEWIIYVTDVGQQLHFDMVF-SAAK---RAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLV 360 (512)
Q Consensus 287 ~~k~--~~~~~d~~iyV~g~~q~~hf~~l~-~~~~---~~g~~~~~~~~~~~~~Hv~~g~V~~~~g~kmSkR~G~~v~l~ 360 (512)
+.+. ....+...++|++++.++.|+++. .++. ..| . +|+..|+|. |+|. .+|+|||||+||+|++.
T Consensus 207 iecsam~~~~lg~~~Dih~gG~DlifpHh~neiaqs~a~~g-~----p~~~~w~H~--g~v~-~~G~KMSKS~GN~i~~~ 278 (463)
T PRK00260 207 IECSAMSTKYLGETFDIHGGGADLIFPHHENEIAQSEAATG-K----PFANYWMHN--GFVT-VNGEKMSKSLGNFFTIR 278 (463)
T ss_pred HHHHHHHHHhcCCCcceecCccccCCCchHhHHHHHHHhcC-C----CcceEEEEc--cEEc-cCCCcccCcCCCCCCHH
Confidence 5431 111233457889888887777542 3332 345 2 688899998 7777 68999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhchhhHHHHhhccCCCCCccccccccccccCCchHHHHHHHHHHHH
Q 010356 361 DLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNRLTNYTFSFDQMLNDKGNTAVYLLYAHARICS 440 (512)
Q Consensus 361 dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~airy~~L~~~~~~~~~Fd~~~~~~~~~~~g~ylqY~~aR~~s 440 (512)
|++++ +|++++||++|+.+++++++|+++.+... +..+.|+.+
T Consensus 279 dll~~-----------------------------~~~d~lR~~ll~~~~~~~~~fs~~~l~~a--------~~~~~rl~~ 321 (463)
T PRK00260 279 DLLKK-----------------------------YDPEVLRFFLLSAHYRSPLNFSEEALEQA--------KKALERLYN 321 (463)
T ss_pred HHHHH-----------------------------cCchHhHHHHHhCCCCCCCccCHHHHHHH--------HHHHHHHHH
Confidence 99998 79999999999999999999999876443 234567766
Q ss_pred HHHhhcCChhhhhhcCCCCCCCHHHHHHHHHHHhhHHHHHHHHH-hcChHHHHHHHHHHHHHHhcchhc
Q 010356 441 IIRKSGKDIEELKKTGSLVLDHADERALGLHLLHFSEVIEEALT-NLLPNVVCEYLYNLSEYFTRFYSN 508 (512)
Q Consensus 441 il~k~~~~~~~~~~~~~~~l~~~~e~~L~~~l~~~~~~v~~a~~-~~~p~~l~~yl~~La~~fn~fY~~ 508 (512)
+++.... .+.+..+...+..+.+.+.+|++ .++...++..|++++..+|.+.+.
T Consensus 322 ~~~~~~~--------------~~~d~~~~~~l~~~~~~~~~al~ddln~~~Al~~l~~lv~~~n~~~~~ 376 (463)
T PRK00260 322 ALAETAL--------------GEDDEALLAELEEFKERFIEAMDDDFNTPEALAVLFELAREINRALET 376 (463)
T ss_pred HHHHhhh--------------ccchhhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhc
Confidence 6665420 01112455667778888899995 899999999999999999987643
No 14
>PRK14536 cysS cysteinyl-tRNA synthetase; Provisional
Probab=100.00 E-value=9.3e-36 Score=313.82 Aligned_cols=338 Identities=13% Similarity=0.083 Sum_probs=235.4
Q ss_pred CCceEEEEeeCCCCCCCCcccchhhhhHHHHHHHHHHHCCCeEEEeeccCccchHHHHHHHHHHhhCCCCCccCcccHHH
Q 010356 83 RVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGE 162 (512)
Q Consensus 83 ~~~~v~Ve~~spNp~~~lHvGH~R~~iiGD~lar~l~~~G~~V~~~~~i~D~G~qi~~l~~~~~~~~~~~~~~~~~~i~~ 162 (512)
.+++|.++.|+|+|++++||||+|++|..|+|+|+|++.||+|.++.+|+|.|+..+ +.+ .+++
T Consensus 20 ~~~~v~mYvCGpTvy~~~HiGhar~~v~~Dvl~R~l~~~G~~V~~v~NiTDv~hl~~----------~~D--e~dd---- 83 (490)
T PRK14536 20 EHGHVRLYGCGPTVYNYAHIGNLRTYVFQDTLRRTLHFLGYRVTHVMNITDVGHLTD----------DAD--SGED---- 83 (490)
T ss_pred CCCceEEEeeCCccCCCcccchhHHHHHHHHHHHHHHhcCCceEEEEeecccccccc----------CCc--CCCh----
Confidence 467899999999999999999999999999999999999999999999999885432 111 2455
Q ss_pred HHHHHHHHhcccCCChHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHcCCeE-eeecc-ccccCchHHHH
Q 010356 163 LQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDL-EEKGE-SFYNPYIPGVI 240 (512)
Q Consensus 163 l~~~y~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~L~I~f-~~~~e-s~~~~~v~~~~ 240 (512)
++..+|.+. | ..++++++.+.+.|.+++++|||.+ ++++. +.|.+.+.+++
T Consensus 84 --Kii~~A~~~--------------------g-----~~~~e~a~~~~~~f~~d~~~Lni~~~~~~~rat~hi~~ii~~i 136 (490)
T PRK14536 84 --KMVKSAQEH--------------------G-----KSVLEIAAHYTAAFFRDTARLNIERPSIVCNATEHIQDMIALI 136 (490)
T ss_pred --HHHHHHHHc--------------------C-----CCHHHHHHHHHHHHHHHHHHcCCCCCceecCcccHHHHHHHHH
Confidence 334444331 1 1236789999999999999999998 66654 78889999999
Q ss_pred HHHHhCCCeeeeCceEEEEec------------------C----------CCCCeEEEec----CC-ccccccch----H
Q 010356 241 DELSKQGLVEESQGARVIFIE------------------G----------VNIPLIIVKS----DG-GFNYASTD----L 283 (512)
Q Consensus 241 ~~L~~~g~~~~~dGa~~~~~~------------------g----------~~~d~vl~ks----DG-~~~Y~~~D----i 283 (512)
++|.++|++|+.+|.+||++. | +..|++|||. .| .+.|.+++ .
T Consensus 137 ~~L~~kG~aY~~~~~vyFdv~~~~~YG~Ls~~~~~~l~~g~~v~~~~~K~np~DFaLWK~~~~~~~~~~~W~SpWG~GRP 216 (490)
T PRK14536 137 KRLEARGHTYCAGGNVYFDIRTFPSYGSLASAAVEDLQAGARIEHDTNKRNPHDFVLWFTRSKFENHALTWDSPWGRGYP 216 (490)
T ss_pred HHHHHCCCEEEECCeEEEeCCcccchhhhcCCCHHHhhcCCcCCCCCCCCCchhchhcccccCCCCCCCcccCCCCCCCC
Confidence 999999999999999999874 1 1247899864 22 36777765 4
Q ss_pred HHHHHHHh--hcCCceEEEEeeCcccchHHHHH---HHHHHc-CCCCCCCCCCCceEEEEeEEEECCCCcceeeecCCee
Q 010356 284 AALWYRLN--EEKAEWIIYVTDVGQQLHFDMVF---SAAKRA-GWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVV 357 (512)
Q Consensus 284 A~~~~k~~--~~~~d~~iyV~g~~q~~hf~~l~---~~~~~~-g~~~~~~~~~~~~~Hv~~g~V~~~~g~kmSkR~G~~v 357 (512)
+||+.+.. .......++|+|++.++.||+.. +..+++ |. +|+..|+|. |+|. .+|+|||||.||++
T Consensus 217 GWHIECsaMs~~~lg~~~DIH~GG~DliFPHHeneiAqs~a~~g~-----~~~~~w~h~--g~l~-~~g~KMSKSlGN~i 288 (490)
T PRK14536 217 GWHIECSAMSMKYLGEQCDIHIGGVDHIRVHHTNEIAQCEAATGK-----PWVRYWLHH--EFLL-MNKGKMSKSAGQFL 288 (490)
T ss_pred ChHHHHHHHHHHHcCCceeEEeccccCCCcchhhHHHHHHHhcCC-----CcceEEEEc--CEEe-ecCccccccCCCcc
Confidence 56665421 11123357999999998888642 333443 43 678899998 6676 57889999999999
Q ss_pred cHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhchhhHHHHhhccCCCCCccccccccccccCCchHHHHHHHHH
Q 010356 358 RLVDLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNRLTNYTFSFDQMLNDKGNTAVYLLYAHAR 437 (512)
Q Consensus 358 ~l~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~airy~~L~~~~~~~~~Fd~~~~~~~~~~~g~ylqY~~aR 437 (512)
+++|+++++ ++++++||++|+.+++++++||++.+.+... +--.++.++.+
T Consensus 289 tl~dll~~g----------------------------~~~~alR~~lls~~yr~~l~Fs~e~l~~a~~-~~~rl~~~~~~ 339 (490)
T PRK14536 289 TLSSLQEKG----------------------------FQPLDYRFFLLGGHYRSQLAFSWEALKTAKA-ARRSLVRRVAR 339 (490)
T ss_pred cHHHHHhcC----------------------------CCHHHHHHHHHhCCCCCCCCCCHHHHHHHHH-HHHHHHHHHHH
Confidence 999999975 6789999999999999999999999876543 11233333333
Q ss_pred HHHHHHhhcCChhhhhhcCC-CCCCCHHHHHHHHHHHhhHHHHHHHHH-hcChHHHHHHHHHHHHHHhc
Q 010356 438 ICSIIRKSGKDIEELKKTGS-LVLDHADERALGLHLLHFSEVIEEALT-NLLPNVVCEYLYNLSEYFTR 504 (512)
Q Consensus 438 ~~sil~k~~~~~~~~~~~~~-~~l~~~~e~~L~~~l~~~~~~v~~a~~-~~~p~~l~~yl~~La~~fn~ 504 (512)
+...+ ...... ..... ....+.....+...+..+...+.+|+. .++...++..|++++...|.
T Consensus 340 ~~~~~---~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~al~dDlntp~Al~~l~~~~~~~n~ 404 (490)
T PRK14536 340 VVDAA---RATTGS-VRGTLAECAAERVAESRASESELLLTDFRAALEDDFSTPKALSELQKLVKDTSV 404 (490)
T ss_pred HHHhh---hccccc-ccccccccccccccchhhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhhh
Confidence 32211 100000 00000 000000000011123345555555554 57888888888888888774
No 15
>PRK14534 cysS cysteinyl-tRNA synthetase; Provisional
Probab=100.00 E-value=2.1e-35 Score=309.55 Aligned_cols=261 Identities=17% Similarity=0.165 Sum_probs=205.9
Q ss_pred ceEEEEeeCCCCCCCCcccchhhhhHHHHHHHHHHHCCCeEEEeeccCccchHHHHHHHHHHhhCCCCCccCcccHHHHH
Q 010356 85 KKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQ 164 (512)
Q Consensus 85 ~~v~Ve~~spNp~~~lHvGH~R~~iiGD~lar~l~~~G~~V~~~~~i~D~G~qi~~l~~~~~~~~~~~~~~~~~~i~~l~ 164 (512)
++|.++.|+|+|+.++||||+|++|..|+|+|+|+..||+|.++.+|+|.|+..+ ++. .+++
T Consensus 20 ~~v~mY~CGpTVYd~~HiGh~r~~v~~Dvl~R~l~~~G~~V~~v~NiTDIghltg-----------~~D-~gdd------ 81 (481)
T PRK14534 20 SDVKVYACGPTVYNYAHIGNFRTYIFEDLLIKSLRLLKYNVNYAMNITDIGHLTG-----------DFD-DGED------ 81 (481)
T ss_pred CceEEEeCCCCCCCCCCccchhHHHHHHHHHHHHHHcCCceEEEEeccccccccC-----------Ccc-CCCc------
Confidence 5899999999999999999999999999999999999999999999999886332 211 2455
Q ss_pred HHHHHHhcccCCChHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHcCCeE-eeec-cccccCchHHHHHH
Q 010356 165 EFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDL-EEKG-ESFYNPYIPGVIDE 242 (512)
Q Consensus 165 ~~y~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~L~I~f-~~~~-es~~~~~v~~~~~~ 242 (512)
+|..+|.+. | ..|+++++.+.+.|.+++++|||.+ ++.+ .+.|.+.+.++++.
T Consensus 82 KIi~~A~~~--------------------g-----~~~~e~a~~~~~~f~~d~~~Lni~~~~~~p~atehi~~~i~~i~~ 136 (481)
T PRK14534 82 KVVKAARER--------------------G-----LTVYEISRFFTEAFFDDCKKLNIVYPDKVLVASEYIPIMIEVVKV 136 (481)
T ss_pred HHHHHHHHc--------------------C-----CCHHHHHHHHHHHHHHHHHHcCCCCCceecCccchHHHHHHHHHH
Confidence 344444432 1 1236789999999999999999998 4554 47888899999999
Q ss_pred HHhCCCeeeeCceEEEEec---------C---------------------CCCCeEEEe-----cCCccccccch----H
Q 010356 243 LSKQGLVEESQGARVIFIE---------G---------------------VNIPLIIVK-----SDGGFNYASTD----L 283 (512)
Q Consensus 243 L~~~g~~~~~dGa~~~~~~---------g---------------------~~~d~vl~k-----sDG~~~Y~~~D----i 283 (512)
|.++|++|+.+|.+||++. | +..|++||| .+|.++|.+++ +
T Consensus 137 L~~kG~aY~~~~~vyFdv~~~~~YG~ls~~~l~~l~~~~~~~v~~~~~K~np~DFaLWK~~~~~~~~~~~w~spWG~GrP 216 (481)
T PRK14534 137 LEENGFTYFVNGNVYFDTSCFKSYGQMAGINLNDFKDMSVSRVEIDKSKRNKSDFVLWFTNSKFKDQEMKWDSPWGFGYP 216 (481)
T ss_pred HHHCCCEEEECCeEEEecccccchhhhcCCCHHHHhhhccCcCCcccCCCCcccchhcCcCCcCCCCCCeecCCCCCcCC
Confidence 9999999999999999764 0 124789997 36778888875 5
Q ss_pred HHHHHHHh--hcCCceEEEEeeCcccchHHHH---HHHHHH-cCCCCCCCCCCCceEEEEeEEEECCCCcceeeecCCee
Q 010356 284 AALWYRLN--EEKAEWIIYVTDVGQQLHFDMV---FSAAKR-AGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVV 357 (512)
Q Consensus 284 A~~~~k~~--~~~~d~~iyV~g~~q~~hf~~l---~~~~~~-~g~~~~~~~~~~~~~Hv~~g~V~~~~g~kmSkR~G~~v 357 (512)
+||+.+.. ...+...++|+|++.++.||+. .++.++ .|. +++..|+|. |+|+ .+|+|||||.||++
T Consensus 217 gWHiECsam~~~~lg~~~DIH~GG~DliFPHHene~Aqs~a~~g~-----~~~~~W~H~--g~l~-~~g~KMSKSlGN~i 288 (481)
T PRK14534 217 SWHLECAAMNLEYFKSTLDIHLGGVDHIGVHHINEIAIAECYLNK-----KWCDMFVHG--EFLI-MEYEKMSKSNNNFI 288 (481)
T ss_pred cHHHHHHHHHHHHcCCcceEEecccccCCCcchhHHHHHhhhcCC-----CcceEEEEe--cEEE-ecCceecccCCCcc
Confidence 66665421 1122346789999988888753 233333 343 578899998 6777 46889999999999
Q ss_pred cHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhchhhHHHHhhccCCCCCcccccccccccc
Q 010356 358 RLVDLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNRLTNYTFSFDQMLNDK 424 (512)
Q Consensus 358 ~l~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~airy~~L~~~~~~~~~Fd~~~~~~~~ 424 (512)
+++|+++++ ++++++||++|+.+++++++||++.+.+..
T Consensus 289 ~l~dll~~~----------------------------~~~~alR~~lls~~yr~~l~Fs~e~l~~a~ 327 (481)
T PRK14534 289 TIKDLEDQG----------------------------FSPLDFRYFCLTAHYRTQLKFTFNNLKACK 327 (481)
T ss_pred cHHHHHhcC----------------------------CChhHHHHHHHhCCCCCCCCCCHHHHHHHH
Confidence 999999874 578999999999999999999999987653
No 16
>PRK14535 cysS cysteinyl-tRNA synthetase; Provisional
Probab=100.00 E-value=9.1e-35 Score=310.59 Aligned_cols=313 Identities=14% Similarity=0.176 Sum_probs=229.1
Q ss_pred CCceEEEEeeCCCCCCCCcccchhhhhHHHHHHHHHHHCCCeEEEeeccCccchHHHHHHHHHHhhCCCCCccCcccHHH
Q 010356 83 RVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGE 162 (512)
Q Consensus 83 ~~~~v~Ve~~spNp~~~lHvGH~R~~iiGD~lar~l~~~G~~V~~~~~i~D~G~qi~~l~~~~~~~~~~~~~~~~~~i~~ 162 (512)
.+++|.++.|+|+|++++||||+|++|..|+|+|+|+..||+|.++.+++|+|..|
T Consensus 245 ~~~~V~mYvCGPTVYd~~HIGHaRt~V~~DVL~R~Lr~~Gy~V~fV~NiTD~DDKI------------------------ 300 (699)
T PRK14535 245 DPENVRMYVCGMTVYDYCHLGHARVMVVFDMIARWLRECGYPLTYVRNITDIDDKI------------------------ 300 (699)
T ss_pred CCCceEEEecCCcCCCCCcccchhHHHHHHHHHHHHHHcCCceEEEeCCcccchHH------------------------
Confidence 35789999999999999999999999999999999999999999999999966433
Q ss_pred HHHHHHHHhcccCCChHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHcCCeE-eeec-cccccCchHHHH
Q 010356 163 LQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDL-EEKG-ESFYNPYIPGVI 240 (512)
Q Consensus 163 l~~~y~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~L~I~f-~~~~-es~~~~~v~~~~ 240 (512)
..+|.+. +. .|+++++.+.+.|.+++++|||.+ ++.+ .+.|.+.+.+++
T Consensus 301 ----I~~A~e~-G~------------------------sp~ela~~y~~~F~~d~~~LnI~~p~~~praTeHI~~ii~lI 351 (699)
T PRK14535 301 ----IARAAEN-GE------------------------TIGELTARFIQAMHEDADALGVLRPDIEPKATENIPQMIAMI 351 (699)
T ss_pred ----HHHHHHc-CC------------------------CHHHHHHHHHHHHHHHHHHcCCCCCcEeeCccchHHHHHHHH
Confidence 3333321 11 235788899999999999999998 5544 488889999999
Q ss_pred HHHHhCCCeeee-CceEEEEec-----C-----------------------CCCCeEEEec--CCccccccch----HHH
Q 010356 241 DELSKQGLVEES-QGARVIFIE-----G-----------------------VNIPLIIVKS--DGGFNYASTD----LAA 285 (512)
Q Consensus 241 ~~L~~~g~~~~~-dGa~~~~~~-----g-----------------------~~~d~vl~ks--DG~~~Y~~~D----iA~ 285 (512)
+.|.++|++|+. +|.+||++. | +..|++|||+ .|.|.|.+++ .+|
T Consensus 352 ~~LidkG~AYe~~~gsVYFdV~~f~~YG~LS~~~~~~l~~g~rve~d~~Krnp~DFaLWK~sk~Gep~W~SPWG~GRPGW 431 (699)
T PRK14535 352 ETLIQNGKAYPAANGDVYYAVREFAAYGQLSGKSLDDLRAGERVEVDGFKRDPLDFVLWKAAKAGEPAWESPWGNGRPGW 431 (699)
T ss_pred HHHHHCCCEEEeCCCCEEEecccccccccccCCChHHhcCCCccccccccCCccccceeccCCCCCCCccCCCCCCCCch
Confidence 999999999986 688999874 1 1258999985 6778888875 567
Q ss_pred HHHHH--hhcCCceEEEEeeCcccchHHHH---HHHHHH-cCCCC-----------CCCCCCCceEEEEeEEEECCCCcc
Q 010356 286 LWYRL--NEEKAEWIIYVTDVGQQLHFDMV---FSAAKR-AGWLS-----------ADDSTYPKASHVGFGLVLGEDGKR 348 (512)
Q Consensus 286 ~~~k~--~~~~~d~~iyV~g~~q~~hf~~l---~~~~~~-~g~~~-----------~~~~~~~~~~Hv~~g~V~~~~g~k 348 (512)
|+.+. ........++|+|++.++.||+. .+..++ .|... ..++|+..|+|. |+|+ .+|+|
T Consensus 432 HIECSAMs~~~LG~~~DIHgGG~DLiFPHHENEiAQseA~~g~~~~~~~~~~~~~~~~~~~aryWmHn--G~V~-vdGeK 508 (699)
T PRK14535 432 HIECSAMSENLFGDTFDIHGGGADLQFPHHENEIAQSVGATGHTCGHHHAQTHHGQSIASHVKYWLHN--GFIR-VDGEK 508 (699)
T ss_pred HHHHHHHHHHHcCCcceeECCccccCCCCCccHHHHHHHhhCCCcccccccccccccccccccEEEEC--CeEe-eCCCc
Confidence 76552 11223456899999999988853 333344 34310 001478899998 7787 68999
Q ss_pred eeeecCCeecHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhchhhHHHHhhccCCCCCccccccccccccCCch
Q 010356 349 LRTRFSEVVRLVDLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNRLTNYTFSFDQMLNDKGNTA 428 (512)
Q Consensus 349 mSkR~G~~v~l~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~airy~~L~~~~~~~~~Fd~~~~~~~~~~~g 428 (512)
||||.||++++.|++++ ++++++||++|+.+++++++|+++.+.+...
T Consensus 509 MSKSLGN~it~~dlLe~-----------------------------ygpdalRl~lLsshYRspL~fS~e~Le~Ak~--- 556 (699)
T PRK14535 509 MSKSLGNFFTIREVLKQ-----------------------------YDPEVVRFFILRAHYRSPLNYSDAHLDDAKG--- 556 (699)
T ss_pred cCCCCCCcCCHHHHHHh-----------------------------CCHHHHHHHHHcCCCCCCCCcCHHHHHHHHH---
Confidence 99999999999999998 7999999999999999999999998765432
Q ss_pred HHHHHHHHHHHHHHHhhcCChhhhhhcCCCCCCCHHHHHHHHHHHhhHHHHHHHHH-hcChHHHHHHHHHHHHHHhc
Q 010356 429 VYLLYAHARICSIIRKSGKDIEELKKTGSLVLDHADERALGLHLLHFSEVIEEALT-NLLPNVVCEYLYNLSEYFTR 504 (512)
Q Consensus 429 ~ylqY~~aR~~sil~k~~~~~~~~~~~~~~~l~~~~e~~L~~~l~~~~~~v~~a~~-~~~p~~l~~yl~~La~~fn~ 504 (512)
.+.|+...++.... . . .. +...+..+++.+.+|+. .+....++..|++++...|+
T Consensus 557 -----~l~Rl~~~l~~~~~-~------~-~~--------~~~~l~~~~~~f~~AL~DDlntp~Ala~L~~lvk~iN~ 612 (699)
T PRK14535 557 -----ALTRLYTTLKNTPA-A------E-FM--------LSENVNDYTRRFYAAMNDDFGTVEAVAVLFELAGEVNK 612 (699)
T ss_pred -----HHHHHHHHHHhhhh-c------c-ch--------hhhhHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHH
Confidence 33444444443210 0 0 00 00122334444545543 46666777777777776664
No 17
>PF01406 tRNA-synt_1e: tRNA synthetases class I (C) catalytic domain; InterPro: IPR015803 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Cysteinyl-tRNA synthetase (6.1.1.16 from EC) is an alpha monomer and belongs to class Ia.; GO: 0000166 nucleotide binding, 0004817 cysteine-tRNA ligase activity, 0005524 ATP binding, 0006423 cysteinyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3SP1_B 3TQO_A 3C8Z_B 1LI5_B 1LI7_B 1U0B_B.
Probab=100.00 E-value=1.2e-35 Score=291.49 Aligned_cols=249 Identities=20% Similarity=0.196 Sum_probs=182.1
Q ss_pred CCCceEEEEeeCCCCCCCCcccchhhhhHHHHHHHHHHHCCCeEEEeeccCccchHHHHHHHHHHhhCCCCCccCcccHH
Q 010356 82 LRVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIG 161 (512)
Q Consensus 82 ~~~~~v~Ve~~spNp~~~lHvGH~R~~iiGD~lar~l~~~G~~V~~~~~i~D~G~qi~~l~~~~~~~~~~~~~~~~~~i~ 161 (512)
..+++|.++.|+|+|+..+||||+|++|..|+|.|+|++.||+|..+.+|+|. +|
T Consensus 4 ~~~~~v~~Y~CGPTVYd~~HiGhaR~~v~~D~l~R~L~~~g~~V~~V~NiTDi----------------------DD--- 58 (300)
T PF01406_consen 4 LNPGKVRMYVCGPTVYDYAHIGHARTYVFFDVLRRYLEYLGYDVTYVMNITDI----------------------DD--- 58 (300)
T ss_dssp SCTTEEEEEEEEEBTTS--BHHHHHHHHHHHHHHHHHHHTT-EEEEEEEEB-S----------------------SH---
T ss_pred CCCCeEEEEcCCCCCCCCCCCcceeeeeeHHHHHHHHHHcCCeEEEEEecccc----------------------ch---
Confidence 46789999999999999999999999999999999999999999999999994 33
Q ss_pred HHHHHHHHHhcccCCChHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHcCCeE-eeecc-ccccCchHHH
Q 010356 162 ELQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDL-EEKGE-SFYNPYIPGV 239 (512)
Q Consensus 162 ~l~~~y~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~L~I~f-~~~~e-s~~~~~v~~~ 239 (512)
+|+.+|.+.- ..|+++++.+.+.|.+++++|||.. +.++. |.|.+.+.++
T Consensus 59 ---Kii~~A~~~g-------------------------~~~~ela~~y~~~f~~dm~~Lnv~~p~~~prate~i~~ii~~ 110 (300)
T PF01406_consen 59 ---KIIKRAREEG-------------------------VSPQELARRYEEEFFEDMKALNVLPPDHYPRATEHIPEIIEL 110 (300)
T ss_dssp ---HHHHHHHHTT-------------------------S-HHHHHHHHHHHHHHHHHHTT----SEEEEGGGGHHHHHHH
T ss_pred ---HHHHHHHhcc-------------------------CCHHHHHHHHHHHHHHHHHHcCCCCCccccchhccHHHHHHH
Confidence 5556665421 2357889999999999999999997 66654 8898999999
Q ss_pred HHHHHhCCCeeeeC-ceEEEEec-----C-----------------------CCCCeEEEec--CCccccccch----HH
Q 010356 240 IDELSKQGLVEESQ-GARVIFIE-----G-----------------------VNIPLIIVKS--DGGFNYASTD----LA 284 (512)
Q Consensus 240 ~~~L~~~g~~~~~d-Ga~~~~~~-----g-----------------------~~~d~vl~ks--DG~~~Y~~~D----iA 284 (512)
++.|+++|++|+.+ |.|||+++ | +..|++|||. .|.+.|.++. .+
T Consensus 111 i~~Li~~G~AY~~~~g~VYFdv~~~~~YG~Ls~~~~~~l~~~~~~~~~~~K~~p~DFaLWK~~~~~e~~w~spwG~GRPG 190 (300)
T PF01406_consen 111 IEKLIDKGHAYESEDGSVYFDVSKFPDYGKLSNQDLEDLEAGARVEVDYEKRNPRDFALWKAAKPGEPSWDSPWGKGRPG 190 (300)
T ss_dssp HHHHHHTTSEEEETTSEEEE-CCGSTTTTTTTT-SHHHHHHCHHHTT-TTSSSTT-EEEEEE--TTS--B--TTSSEEE-
T ss_pred HHHHHHCCCeEEcCCCcEEEeeccccccccccccchhhHHhhhhcccccccCCCcceeeeecccccCCcccCCCccCcCc
Confidence 99999999999988 99999875 1 1358999986 4667777765 45
Q ss_pred HHHHHHh----hcCCceEEEEeeCcccchHHHH---HHHHHHc-CCCCCCCCCCCceEEEEeEEEECCCCcceeeecCCe
Q 010356 285 ALWYRLN----EEKAEWIIYVTDVGQQLHFDMV---FSAAKRA-GWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEV 356 (512)
Q Consensus 285 ~~~~k~~----~~~~d~~iyV~g~~q~~hf~~l---~~~~~~~-g~~~~~~~~~~~~~Hv~~g~V~~~~g~kmSkR~G~~ 356 (512)
||+.+.. .++ ..++|+|++.++.||+. .+..+++ |. +|+..|+|. |+|. .+|+|||||.||+
T Consensus 191 WHiECsam~~~~lG--~~~DIH~GG~DL~FPHHENEiAqs~a~~g~-----~~a~~W~H~--g~l~-~~g~KMSKSlgN~ 260 (300)
T PF01406_consen 191 WHIECSAMSMKYLG--DTFDIHGGGIDLIFPHHENEIAQSEAATGK-----PFANYWMHN--GHLN-VDGEKMSKSLGNF 260 (300)
T ss_dssp HHHHHHHHHHHHHT--TSEEEEEEEGGGTTTHHHHHHHHHHHHHSS------SEEEEEEE----EE-ETTCE--TTTT--
T ss_pred eeeehHHHHHHHcC--CCceEEccccccCCCCccchHHHHHHhhCc-----hHHHHHHHH--HHHh-hcCccccccCCCE
Confidence 6655421 133 34899999999988864 3344444 42 689999999 7777 4789999999999
Q ss_pred ecHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhchhhHHHHhhccCCCCCcccccccccc
Q 010356 357 VRLVDLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNRLTNYTFSFDQMLN 422 (512)
Q Consensus 357 v~l~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~airy~~L~~~~~~~~~Fd~~~~~~ 422 (512)
+++.|+++. ++++++||++|+.+++++++|+++.+.+
T Consensus 261 ~~i~dll~~-----------------------------~~~~~lR~~~l~~hYr~~l~~s~~~l~~ 297 (300)
T PF01406_consen 261 ITIRDLLKK-----------------------------YSPDALRLFLLSTHYRKPLNFSEENLEE 297 (300)
T ss_dssp -BHHHHHTT-----------------------------S-HHHHHHHHHTS-TTS-EEE-HHHHHH
T ss_pred EEHHHHhhc-----------------------------CCHHHHHHHHhcCCCCCccccCHHHHHH
Confidence 999999987 7899999999999999999999997754
No 18
>TIGR00435 cysS cysteinyl-tRNA synthetase. This model finds the cysteinyl-tRNA synthetase from most but not from all species. The enzyme from one archaeal species, Archaeoglobus fulgidus, is found but the equivalent enzymes from some other Archaea, including Methanococcus jannaschii, are not found, although biochemical evidence suggests that tRNA(Cys) in these species are charged directly with Cys rather than through a misacylation and correction pathway as for tRNA(Gln).
Probab=100.00 E-value=1.6e-34 Score=306.53 Aligned_cols=252 Identities=18% Similarity=0.182 Sum_probs=198.0
Q ss_pred CCceEEEEeeCCCCCCCCcccchhhhhHHHHHHHHHHHCCCeEEEeeccCccchHHHHHHHHHHhhCCCCCccCcccHHH
Q 010356 83 RVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGE 162 (512)
Q Consensus 83 ~~~~v~Ve~~spNp~~~lHvGH~R~~iiGD~lar~l~~~G~~V~~~~~i~D~G~qi~~l~~~~~~~~~~~~~~~~~~i~~ 162 (512)
.+++|.++.|+|+|++++||||+|+++.+|+++|+|++.||+|.++.+++|+|..|-
T Consensus 18 ~~~~v~~yvcgptvy~~~HiGhar~~v~~Dvl~R~lr~~G~~V~~v~n~tD~ddkIi----------------------- 74 (465)
T TIGR00435 18 VQGKVKMYVCGPTVYDYCHIGHARTAIVFDVLRRYLRYLGYKVQYVQNITDIDDKII----------------------- 74 (465)
T ss_pred CCCcceEEEecCccCCCcccccchHHHHHHHHHHHHHHcCCcEEEEEeeCCccHHHH-----------------------
Confidence 456899999999999999999999999999999999999999999999999766442
Q ss_pred HHHHHHHHhcccCCChHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHcCCeEe-ee-ccccccCchHHHH
Q 010356 163 LQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLE-EK-GESFYNPYIPGVI 240 (512)
Q Consensus 163 l~~~y~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~L~I~f~-~~-~es~~~~~v~~~~ 240 (512)
.+|.+. ..+ ++++++.+.+.|.++|++|||.++ +. ..|.|.+.+.+++
T Consensus 75 -----~~A~~~-g~~------------------------~~e~a~~~~~~f~~dl~~LgI~~d~~~~raT~hi~~i~~~i 124 (465)
T TIGR00435 75 -----KRAREN-GES------------------------VYEVSERFIEAYFEDMKALNVLPPDLEPRATEHIDEIIEFI 124 (465)
T ss_pred -----HHHHHc-CCC------------------------HHHHHHHHHHHHHHHHHHhCCCCCcCCccccccHHHHHHHH
Confidence 222211 111 256789999999999999999995 44 4588889999999
Q ss_pred HHHHhCCCeeeeC-ceEEEEec-----C-----------------------CCCCeEEEec--CCccccccch----HHH
Q 010356 241 DELSKQGLVEESQ-GARVIFIE-----G-----------------------VNIPLIIVKS--DGGFNYASTD----LAA 285 (512)
Q Consensus 241 ~~L~~~g~~~~~d-Ga~~~~~~-----g-----------------------~~~d~vl~ks--DG~~~Y~~~D----iA~ 285 (512)
++|+++|++|+.+ |++||++. | +..|++|||+ .|.+.|.+++ .+|
T Consensus 125 ~~L~ekG~aY~~~~g~vyfdv~~~~~yG~ls~~~~~~~~~~~~~~~~~~K~~p~DF~Lwk~~~~~~~~w~spwG~grpgW 204 (465)
T TIGR00435 125 EQLIEKGYAYVSDNGDVYFDVSKFKDYGKLSKQDLDQLEAGARVDVDEAKRNKLDFVLWKSSKEGEPKWDSPWGKGRPGW 204 (465)
T ss_pred HHHHHCCCEEEecCCcEEEeccccchhccCCCCCHHHHhcccccCcccccCCCCCceeeCCCCCCCCCCcCCCCCCCCCc
Confidence 9999999999998 99999864 1 1258999985 5777777754 344
Q ss_pred HHHHH--hhcCCceEEEEeeCcccchHHHHH---HHHHH-cCCCCCCCCCCCceEEEEeEEEECCCCcceeeecCCeecH
Q 010356 286 LWYRL--NEEKAEWIIYVTDVGQQLHFDMVF---SAAKR-AGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRL 359 (512)
Q Consensus 286 ~~~k~--~~~~~d~~iyV~g~~q~~hf~~l~---~~~~~-~g~~~~~~~~~~~~~Hv~~g~V~~~~g~kmSkR~G~~v~l 359 (512)
|+.+- .....+..++|++++.++.|++.. ++.++ .|. +++..|+|. |+|. .+|+|||||+||+|++
T Consensus 205 hiecsam~~~~lg~~~Dih~gG~Dl~fpHhene~aqs~a~~g~-----~~~~~~~h~--g~v~-~~g~KMSKS~GN~i~~ 276 (465)
T TIGR00435 205 HIECSAMNDKYLGDQIDIHGGGVDLIFPHHENEIAQSEAAFGK-----QLAKYWMHN--GFLM-IDNEKMSKSLGNFFTV 276 (465)
T ss_pred HhHHHHHHHHhcCCCceeeccccccccchHHHHHHHHHHhcCC-----CCCcEEEEe--eEEE-ecCccccccCCCcCCH
Confidence 44331 011123346788888887777542 23233 343 578889996 7887 6899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhchhhHHHHhhccCCCCCcccccccccccc
Q 010356 360 VDLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNRLTNYTFSFDQMLNDK 424 (512)
Q Consensus 360 ~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~airy~~L~~~~~~~~~Fd~~~~~~~~ 424 (512)
.|++++ ++++++||++|+.+++++++|+++.+.+..
T Consensus 277 ~dll~~-----------------------------~~~dalR~~ll~~~~~~~l~fs~~~l~~a~ 312 (465)
T TIGR00435 277 RDVLKN-----------------------------YDPEILRYFLLSVHYRSPLDFSEELLEAAK 312 (465)
T ss_pred HHHHHH-----------------------------CCHHHHHHHHHhCCCCCCCccCHHHHHHHH
Confidence 999998 799999999999999999999999876654
No 19
>PRK12418 cysteinyl-tRNA synthetase; Provisional
Probab=100.00 E-value=4.6e-34 Score=292.97 Aligned_cols=305 Identities=14% Similarity=0.072 Sum_probs=227.8
Q ss_pred CceEEEEeeCCCCCCCCcccchhhhhHHHHHHHHHHHCCCeEEEeeccCccchHHHHHHHHHHhhCCCCCccCcccHHHH
Q 010356 84 VKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGEL 163 (512)
Q Consensus 84 ~~~v~Ve~~spNp~~~lHvGH~R~~iiGD~lar~l~~~G~~V~~~~~i~D~G~qi~~l~~~~~~~~~~~~~~~~~~i~~l 163 (512)
+.+|.++.|+|+|++++||||+|++|..|+|+|+||.+||+|.++.+++|+|..|-
T Consensus 7 ~~~v~~YvCGpTvY~~~HIGh~r~~V~~Dvl~R~lr~~G~~V~~V~nitD~ddKIi------------------------ 62 (384)
T PRK12418 7 GGTATMYVCGITPYDATHLGHAATYLAFDLVNRVWRDAGHDVHYVQNVTDVDDPLL------------------------ 62 (384)
T ss_pred CCeeEEEecCCCCCCCCccchhHHHHHHHHHHHHHHHcCCceEEEEecCCcchHHH------------------------
Confidence 44899999999999999999999999999999999999999999999999775443
Q ss_pred HHHHHHHhcccCCChHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHcCCe-Eeeec-cccccCchHHHHH
Q 010356 164 QEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVD-LEEKG-ESFYNPYIPGVID 241 (512)
Q Consensus 164 ~~~y~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~L~I~-f~~~~-es~~~~~v~~~~~ 241 (512)
.+|.+. .. .++++++.+.+.|.+++++|||. ++.++ -|.+.+.++++++
T Consensus 63 ----~~A~~~-G~------------------------~~~e~a~~~~~~f~~d~~~Lni~~~~~~~raTe~i~~~~~~i~ 113 (384)
T PRK12418 63 ----ERAARD-GV------------------------DWRDLAEREIALFREDMEALRVLPPRDYVGAVESIPEVVELVE 113 (384)
T ss_pred ----HHHHHc-CC------------------------CHHHHHHHHHHHHHHHHHHhCCCCCCccccCCCCHHHHHHHHH
Confidence 233221 11 13578889999999999999984 55444 4677889999999
Q ss_pred HHHhCCCeeeeCc----eEEEEec-----C-------------------C--------CCCeEEEec--CCccccccch-
Q 010356 242 ELSKQGLVEESQG----ARVIFIE-----G-------------------V--------NIPLIIVKS--DGGFNYASTD- 282 (512)
Q Consensus 242 ~L~~~g~~~~~dG----a~~~~~~-----g-------------------~--------~~d~vl~ks--DG~~~Y~~~D- 282 (512)
.|.++|++|+.+| .|||++. | + ..|++|||+ .|.+.|.+++
T Consensus 114 ~L~~kG~aY~~~~~~~~~VYFdv~~~~~YG~ls~~~~~~~~~~~~~~~~~~~~~~K~~p~DFaLWK~~~~~~~~w~spwG 193 (384)
T PRK12418 114 KLLASGAAYVVDDEEYPDVYFSVDATPQFGYESGYDRATMLELFAERGGDPDRPGKRDPLDALLWRAARPGEPSWPSPFG 193 (384)
T ss_pred HHHHCCCEEEeCCCCCccEEEecCchhhcccccCCCHHHHHhhhcccccCcccccCCCcccceeeccCCCCCCcccCCCC
Confidence 9999999999888 8999864 1 0 137889985 5678888765
Q ss_pred ---HHHHHHHH--hhcCCceEEEEeeCcccchHHHHH-HHH--HH-cCCCCCCCCCCCceEEEEeEEEECCCCcceeeec
Q 010356 283 ---LAALWYRL--NEEKAEWIIYVTDVGQQLHFDMVF-SAA--KR-AGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRF 353 (512)
Q Consensus 283 ---iA~~~~k~--~~~~~d~~iyV~g~~q~~hf~~l~-~~~--~~-~g~~~~~~~~~~~~~Hv~~g~V~~~~g~kmSkR~ 353 (512)
.+||+.+- ........++|++++.++.|+++- .++ ++ .|-. +|+..|+|. |+|. .+|+|||||+
T Consensus 194 ~GRPGWHiECsam~~~~lg~~~DIH~GG~DL~FPHHeneiaq~~a~~g~~----~~~~~w~H~--g~l~-~~G~KMSKSl 266 (384)
T PRK12418 194 PGRPGWHIECSAIALNRLGSGFDIQGGGSDLIFPHHEFSAAHAEAATGER----RFARHYVHA--GMIG-LDGEKMSKSR 266 (384)
T ss_pred CCCChhHHHHHHHHHHHcCCCcccccCccccccchhHhHHHHHHHhcCCC----CcceEEEEC--CEEC-CCCCcccCcC
Confidence 56666552 111233567899999998888652 333 33 3432 688899997 6665 7899999999
Q ss_pred CCeecHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhchhhHHHHhhccCCCCCccccccccccccCCchHHHHH
Q 010356 354 SEVVRLVDLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNRLTNYTFSFDQMLNDKGNTAVYLLY 433 (512)
Q Consensus 354 G~~v~l~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~airy~~L~~~~~~~~~Fd~~~~~~~~~~~g~ylqY 433 (512)
||+|++.|+++.+ ..++++||++|+.+++++++|+++.+.+...
T Consensus 267 GN~i~~~ell~~G----------------------------~d~~~lR~~lls~~yr~~l~fs~e~l~~a~~-------- 310 (384)
T PRK12418 267 GNLVFVSRLRAAG----------------------------VDPAAIRLALLAGHYRADREWTDAVLAEAEA-------- 310 (384)
T ss_pred CCcCCHHHHHhcc----------------------------CChhheeEEEeccCCCCCcccCHHHHHHHHH--------
Confidence 9999999987642 3455999999999999999999998765322
Q ss_pred HHHHHHHHHHhhcCChhhhhhcCCCCCCCHHHHHHHHHHHhhHHHHHHHHH-hcChHHHHHHHHHHHHHHhcch
Q 010356 434 AHARICSIIRKSGKDIEELKKTGSLVLDHADERALGLHLLHFSEVIEEALT-NLLPNVVCEYLYNLSEYFTRFY 506 (512)
Q Consensus 434 ~~aR~~sil~k~~~~~~~~~~~~~~~l~~~~e~~L~~~l~~~~~~v~~a~~-~~~p~~l~~yl~~La~~fn~fY 506 (512)
.+.|+.+.++... .+ .+..+++.+.+|+. .++...++..|++++...|.+-
T Consensus 311 ~l~r~~~~~~~~~---------------~~-------~~~~~~~~f~~al~dDlnt~~a~~~l~~~~~~~n~~~ 362 (384)
T PRK12418 311 RLARWRAAAALPA---------------GP-------DAADVVARVRAALADDLDTPGALAAVDGWATDALEGG 362 (384)
T ss_pred HHHHHHHHHhccc---------------cc-------hHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhcc
Confidence 3344444433210 00 11233455566654 5899999999999999999875
No 20
>PRK11893 methionyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=3.8e-33 Score=302.25 Aligned_cols=329 Identities=18% Similarity=0.190 Sum_probs=234.9
Q ss_pred ceEEEEeeCCCCCCCCcccchhhhhHHHHHHHHHHHCCCeEEEeeccCccchHHHHHHHHHHhhCCCCCccCcccHHHHH
Q 010356 85 KKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQ 164 (512)
Q Consensus 85 ~~v~Ve~~spNp~~~lHvGH~R~~iiGD~lar~l~~~G~~V~~~~~i~D~G~qi~~l~~~~~~~~~~~~~~~~~~i~~l~ 164 (512)
++++|.-+-|+|+|++||||+|+.++.|+++|++++.|++|.++.+++|+|.+|...+
T Consensus 1 ~~~~i~~~~P~~~g~~HiGh~~~~~~~Dv~~R~~r~~G~~v~~v~g~dd~g~~i~~~a---------------------- 58 (511)
T PRK11893 1 KKFYITTPIYYPNGKPHIGHAYTTLAADVLARFKRLRGYDVFFLTGTDEHGQKIQRKA---------------------- 58 (511)
T ss_pred CCEEEecCCCCCCCCcccchhHHHHHHHHHHHHHHhcCCcEEecCCCCCCChHHHHHH----------------------
Confidence 4688999999999999999999999999999999999999999999999987664221
Q ss_pred HHHHHHhcccCCChHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHcCCeEeee-cc--ccccCchHHHHH
Q 010356 165 EFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEK-GE--SFYNPYIPGVID 241 (512)
Q Consensus 165 ~~y~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~L~I~f~~~-~e--s~~~~~v~~~~~ 241 (512)
.+ .+.++ +++++.+...|++++++|||.+|.+ .. ..|.+.++++++
T Consensus 59 ------~~-~g~~~------------------------~~~~~~~~~~~~~~l~~l~I~~D~~~~t~~~~~~~~v~~~~~ 107 (511)
T PRK11893 59 ------EE-AGISP------------------------QELADRNSAAFKRLWEALNISYDDFIRTTDPRHKEAVQEIFQ 107 (511)
T ss_pred ------HH-cCCCH------------------------HHHHHHHHHHHHHHHHHhCCCcCCceeCCCHHHHHHHHHHHH
Confidence 10 01111 3568888899999999999999743 33 347889999999
Q ss_pred HHHhCCCeeeeCceEEEEecC--C--------------------------------------------------------
Q 010356 242 ELSKQGLVEESQGARVIFIEG--V-------------------------------------------------------- 263 (512)
Q Consensus 242 ~L~~~g~~~~~dGa~~~~~~g--~-------------------------------------------------------- 263 (512)
+|.++|++|+.++.+++...- .
T Consensus 108 ~L~~~G~iY~~~~~~~~~~~~~~~l~~~~l~~~~p~~~~~~~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~p~~~~ 187 (511)
T PRK11893 108 RLLANGDIYLGKYEGWYCVRCEEFYTESELIEDGYRCPPTGAPVEWVEEESYFFRLSKYQDKLLELYEANPDFIQPASRR 187 (511)
T ss_pred HHHHCCCEEEeeeeeeccccccccCCHHHhcCCCCCCCCCCCcceEEecCeEEEEcHHHHHHHHHHHHhCCCccCCHHHH
Confidence 999999999876655443210 0
Q ss_pred ----------CCCeEEEecC---C--------ccccccch--HHHH---HH---------HHhh-cCCceEEEEeeCccc
Q 010356 264 ----------NIPLIIVKSD---G--------GFNYASTD--LAAL---WY---------RLNE-EKAEWIIYVTDVGQQ 307 (512)
Q Consensus 264 ----------~~d~vl~ksD---G--------~~~Y~~~D--iA~~---~~---------k~~~-~~~d~~iyV~g~~q~ 307 (512)
..|..|.|++ | ...|..-| ++|. -+ .+.. +..| +++.|.|+.
T Consensus 188 ~~~~~~l~~~~~D~~isR~~~~WGipiP~~~~~~~~vWfda~~~y~s~~~~p~~~~~~~~~~~~~~~~D--~~~~G~D~~ 265 (511)
T PRK11893 188 NEVISFVKSGLKDLSISRTNFDWGIPVPGDPKHVIYVWFDALTNYLTALGYPDDEELLAELFNKYWPAD--VHLIGKDIL 265 (511)
T ss_pred HHHHHHHHCCCCCcccCCCCCCCCccCCCCCCceEEEEecCcHHHHhHhccccccccchhHHHhcCCCc--ceEeccccc
Confidence 0122233311 0 01111111 1110 00 0100 1222 244455554
Q ss_pred ch-HHHHHHHHHHcCCCCCCCCCCCceEEEEeEEEECCCCcceeeecCCeecHHHHHHHHHHHHHHHHHHhcCCCCCCHH
Q 010356 308 LH-FDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAKNRSKAVLIERGKDKEWTEE 386 (512)
Q Consensus 308 ~h-f~~l~~~~~~~g~~~~~~~~~~~~~Hv~~g~V~~~~g~kmSkR~G~~v~l~dll~~~~~~~~~~~~~~~~~~~~~~~ 386 (512)
.. .....+++.++|+ +++..+.| +|+|+. +|+|||||+||+|++.|++++
T Consensus 266 ~~h~~~~~a~~~a~~~-----~~p~~~~~--~g~v~~-~G~KMSKS~GN~i~~~dll~~--------------------- 316 (511)
T PRK11893 266 RFHAVYWPAFLMAAGL-----PLPKRVFA--HGFLTL-DGEKMSKSLGNVIDPFDLVDE--------------------- 316 (511)
T ss_pred ccchhHHHHHHHhCCC-----CCCCEEEe--eccEEE-CCeeecccCCcEEcHHHHHHH---------------------
Confidence 32 1122244455554 23444444 588885 799999999999999999998
Q ss_pred HHHHHHHhhchhhHHHHhhccCC-CCCcccccccccc-ccCCchHHHHHHHHHHHHHHHhhcCChhhhhhcCCCCCCCHH
Q 010356 387 ELEQTAEAVGYGAAKYFDLKNNR-LTNYTFSFDQMLN-DKGNTAVYLLYAHARICSIIRKSGKDIEELKKTGSLVLDHAD 464 (512)
Q Consensus 387 ~~~~~a~~~~~~airy~~L~~~~-~~~~~Fd~~~~~~-~~~~~g~ylqY~~aR~~sil~k~~~~~~~~~~~~~~~l~~~~ 464 (512)
+|+|++||++++..+ .++++||++.+.. .+++..++++|.++|+.+++++...+. ++.. ..+ .+.
T Consensus 317 --------~g~DalR~~ll~~~~~~~d~~Fs~~~~~~~~~~~l~~~l~n~~~r~~~~~~~~~~~~--~~~~--~~~-~~~ 383 (511)
T PRK11893 317 --------YGVDAVRYFLLREIPFGQDGDFSREAFINRINADLANDLGNLAQRTLSMIAKNFDGK--VPEP--GAL-TEA 383 (511)
T ss_pred --------cCcHHHHHHHHhcCCCCcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--CCCC--ccc-chh
Confidence 799999999999855 8999999999865 567788999999999999998764321 1111 112 455
Q ss_pred HHHHHHHHHhhHHHHHHHHHhcChHHHHHHHHHHHHHHhcchhccc
Q 010356 465 ERALGLHLLHFSEVIEEALTNLLPNVVCEYLYNLSEYFTRFYSNCQ 510 (512)
Q Consensus 465 e~~L~~~l~~~~~~v~~a~~~~~p~~l~~yl~~La~~fn~fY~~~~ 510 (512)
++.|+..+.++++.+.+++++++|+.+++++++++..+|.|++.++
T Consensus 384 d~~l~~~l~~~~~~v~~~~~~~~~~~a~~~l~~l~~~~n~y~~~~~ 429 (511)
T PRK11893 384 DEALLEAAAALLERVRAAMDNLAFDKALEAILALVRAANKYIDEQA 429 (511)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhCC
Confidence 6789999999999999999999999999999999999999998653
No 21
>TIGR03447 mycothiol_MshC cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase. Members of this protein family are MshC, l-cysteine:1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase, an enzyme that uses ATP to ligate a Cys residue to a mycothiol precursor molecule, in the second to last step in mycothiol biosynthesis. This enzyme shows considerable homology to Cys--tRNA ligases, and many instances are misannotated as such. Mycothiol is found in Mycobacterium tuberculosis, Corynebacterium glutamicum, Streptomyces coelicolor, and various other members of the Actinobacteria. Mycothiol is an analog to glutathione.
Probab=100.00 E-value=1.7e-33 Score=290.04 Aligned_cols=252 Identities=16% Similarity=0.134 Sum_probs=198.3
Q ss_pred CceEEEEeeCCCCCCCCcccchhhhhHHHHHHHHHHHCCCeEEEeeccCccchHHHHHHHHHHhhCCCCCccCcccHHHH
Q 010356 84 VKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGEL 163 (512)
Q Consensus 84 ~~~v~Ve~~spNp~~~lHvGH~R~~iiGD~lar~l~~~G~~V~~~~~i~D~G~qi~~l~~~~~~~~~~~~~~~~~~i~~l 163 (512)
+++|.|+.|+|+|++++||||+|++|..|+|+|+|+..||+|.++.+++|+|..|-
T Consensus 34 ~~~v~~YvCGpTvY~~~HIGhart~V~~Dvl~R~lr~~G~~V~fV~nitD~dDKIi------------------------ 89 (411)
T TIGR03447 34 GPEAGMYVCGITPYDATHLGHAATYLTFDLVNRVWRDAGHRVHYVQNVTDVDDPLF------------------------ 89 (411)
T ss_pred CCcceEEEeCCccCCCcccccchHHHHHHHHHHHHHhcCCceEEeeCCCchhHHHH------------------------
Confidence 56899999999999999999999999999999999999999999999999775443
Q ss_pred HHHHHHHhcccCCChHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHcCCe-Eeee-ccccccCchHHHHH
Q 010356 164 QEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVD-LEEK-GESFYNPYIPGVID 241 (512)
Q Consensus 164 ~~~y~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~L~I~-f~~~-~es~~~~~v~~~~~ 241 (512)
.+|.+. .. .++++++.+...|.+++++|||. ++.+ .-|.+.+.+.++++
T Consensus 90 ----~~A~~~-g~------------------------t~~ela~~y~~~f~~d~~~Lni~~~d~~~RaTe~i~~ii~~i~ 140 (411)
T TIGR03447 90 ----ERAERD-GV------------------------DWRELGTSQIDLFREDMEALRVLPPRDYIGAVESIDEVIEMVE 140 (411)
T ss_pred ----HHHHHc-CC------------------------CHHHHHHHHHHHHHHHHHHcCCCCCCcccCCCCCHHHHHHHHH
Confidence 333321 11 13567889999999999999987 4543 34777888999999
Q ss_pred HHHhCCCeeeeCc----eEEEEec-----C----------------------C-----CCCeEEEec--CCccccccch-
Q 010356 242 ELSKQGLVEESQG----ARVIFIE-----G----------------------V-----NIPLIIVKS--DGGFNYASTD- 282 (512)
Q Consensus 242 ~L~~~g~~~~~dG----a~~~~~~-----g----------------------~-----~~d~vl~ks--DG~~~Y~~~D- 282 (512)
+|.++|++|+.+| .|||++. | + ..|++|||. .|.+.|.+++
T Consensus 141 ~L~~kG~aY~~~~~~~~~VYFdv~~~~~YG~Ls~~~~~~~~~~~~~~~~~~~~~~K~~p~DFaLWK~~~~~e~~w~spwG 220 (411)
T TIGR03447 141 KLLAAGAAYEVEGPEYPDVYFSIEATEQFGYESGYDRATMLELFAERGGDPDRPGKRDPLDALLWRAAREGEPSWDSPFG 220 (411)
T ss_pred HHHHCCCEEecCCCCcCcEEEeccchhccccccCCCHHHHHhhhcccccCcccccCCCCcccceeCCCCCCCCCccCCCC
Confidence 9999999998876 7999864 1 0 137889985 6777788765
Q ss_pred ---HHHHHHHH--hhcCCceEEEEeeCcccchHHHHH-HHH--HH-cCCCCCCCCCCCceEEEEeEEEECCCCcceeeec
Q 010356 283 ---LAALWYRL--NEEKAEWIIYVTDVGQQLHFDMVF-SAA--KR-AGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRF 353 (512)
Q Consensus 283 ---iA~~~~k~--~~~~~d~~iyV~g~~q~~hf~~l~-~~~--~~-~g~~~~~~~~~~~~~Hv~~g~V~~~~g~kmSkR~ 353 (512)
.+||+.+- ....+...++|++++.++.|+++. .++ ++ .|.. +|+..|+|. |+|. .+|+|||||+
T Consensus 221 ~GRPGWHiECsam~~~~lg~~~Dih~GG~DLifpHheneiaq~~A~~g~~----~~~~~w~H~--g~l~-~~G~KMSKSl 293 (411)
T TIGR03447 221 PGRPGWHIECSAIATNRLGAGFDIQGGGSDLIFPHHEFSAAHAEAATGVR----RMARHYVHA--GMIG-LDGEKMSKSL 293 (411)
T ss_pred CCCChhHHHHHHHHHHHcCCceecccCcccccccchHhHHHHHHHhcCCC----CcceEEEEC--CEEC-cCCCCccCcC
Confidence 56666542 111233568999999988888653 333 33 3432 688999998 6676 6899999999
Q ss_pred CCeecHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhchhhHHHHhhccCCCCCccccccccccc
Q 010356 354 SEVVRLVDLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNRLTNYTFSFDQMLND 423 (512)
Q Consensus 354 G~~v~l~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~airy~~L~~~~~~~~~Fd~~~~~~~ 423 (512)
||++++.|+++.+ .+++++||++++.+++++++|+.+.+.+.
T Consensus 294 GN~i~~~dl~~~g----------------------------~dp~~lRl~lls~~Yr~pl~fs~e~l~~a 335 (411)
T TIGR03447 294 GNLVFVSKLRAAG----------------------------VDPAAIRLGLLAGHYRQDRDWTDAVLAEA 335 (411)
T ss_pred CCCCCHHHHHhcC----------------------------CCcccEEEEEecCCCCCCCccCHHHHHHH
Confidence 9999999987653 46789999999999999999999988654
No 22
>TIGR00398 metG methionyl-tRNA synthetase. The methionyl-tRNA synthetase (metG) is a class I amino acyl-tRNA ligase. This model appears to recognize the methionyl-tRNA synthetase of every species, including eukaryotic cytosolic and mitochondrial forms. The UPGMA difference tree calculated after search and alignment according to this model shows an unusual deep split between two families of MetG. One family contains forms from the Archaea, yeast cytosol, spirochetes, and E. coli, among others. The other family includes forms from yeast mitochondrion, Synechocystis sp., Bacillus subtilis, the Mycoplasmas, Aquifex aeolicus, and Helicobacter pylori. The E. coli enzyme is homodimeric, although monomeric forms can be prepared that are fully active. Activity of this enzyme in bacteria includes aminoacylation of fMet-tRNA with Met; subsequent formylation of the Met to fMet is catalyzed by a separate enzyme. Note that the protein from Aquifex aeolicus is split into an alpha (large) and beta (sma
Probab=100.00 E-value=2.4e-32 Score=296.91 Aligned_cols=328 Identities=18% Similarity=0.209 Sum_probs=232.1
Q ss_pred EEEeeCCCCCCCCcccchhhhhHHHHHHHHHHHCCCeEEEeeccCccchHHHHHHHHHHhhCCCCCccCcccHHHHHHHH
Q 010356 88 VVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQEFY 167 (512)
Q Consensus 88 ~Ve~~spNp~~~lHvGH~R~~iiGD~lar~l~~~G~~V~~~~~i~D~G~qi~~l~~~~~~~~~~~~~~~~~~i~~l~~~y 167 (512)
+|.-+-|||+|++||||+|+.++.|+|+|++|+.|++|.++.+++|+|..+...+
T Consensus 2 ~it~~~P~~ng~lHiGH~~~~~~aDvl~R~~r~~G~~V~~v~g~D~~g~~i~~~a------------------------- 56 (530)
T TIGR00398 2 LITTALPYANGKPHLGHAYTTILADVYARYKRLRGYEVLFVCGTDEHGTKIELKA------------------------- 56 (530)
T ss_pred EEecCCCCCCCCcccchhHHHHHHHHHHHHHHhcCCeEEEecccCCCCcHHHHHH-------------------------
Confidence 5677889999999999999999999999999999999999999999887664221
Q ss_pred HHHhcccCCChHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHcCCeEeeec---cccccCchHHHHHHHH
Q 010356 168 RRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKG---ESFYNPYIPGVIDELS 244 (512)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~L~I~f~~~~---es~~~~~v~~~~~~L~ 244 (512)
.+. +.+ ++++++.+.+.|+++|++|||.+|++. ++.|.+.+++++++|.
T Consensus 57 ---~~~-g~~------------------------~~e~~~~~~~~~~~~l~~LgI~~D~~~~t~~~~~~~~v~~~~~~L~ 108 (530)
T TIGR00398 57 ---EQE-GLT------------------------PKELVDKYHEEFKDDWKWLNISFDRFIRTTDEEHKEIVQKIFQKLK 108 (530)
T ss_pred ---HHc-CCC------------------------HHHHHHHHHHHHHHHHHHhCCCCCCCccCCCHHHHHHHHHHHHHHH
Confidence 110 111 246788999999999999999997543 4568888999999999
Q ss_pred hCCCeeeeCceEEEEec-----------CCCC----------------------CeEE--EecCCcc-------ccccc-
Q 010356 245 KQGLVEESQGARVIFIE-----------GVNI----------------------PLII--VKSDGGF-------NYAST- 281 (512)
Q Consensus 245 ~~g~~~~~dGa~~~~~~-----------g~~~----------------------d~vl--~ksDG~~-------~Y~~~- 281 (512)
++|++|+.++.+++... |.-+ +.+. -...|++ -|+.+
T Consensus 109 ~kG~iY~~~~~v~~~~~~~~~l~~~~v~g~cp~c~~~~~~g~~ce~cg~~~~~~~l~~p~~~~~~~~~e~~~~~~~f~~l 188 (530)
T TIGR00398 109 ENGYIYEKEIKQLYCPECEMFLPDRYVEGTCPKCGSEDARGDHCEVCGRHLEPTELINPRCKICGAKPELRDSEHYFFRL 188 (530)
T ss_pred HCCCEEEeeeEEEecCCCCcCCchhhhcCCCCCCCCcccccchhhhccccCCHHHhcCCccccCCCcceEEecceEEEEh
Confidence 99999987765555321 1000 0000 0000111 11100
Q ss_pred -hH---------------------HHHHHH-H------------hh-cC------CceEEEE------------------
Q 010356 282 -DL---------------------AALWYR-L------------NE-EK------AEWIIYV------------------ 301 (512)
Q Consensus 282 -Di---------------------A~~~~k-~------------~~-~~------~d~~iyV------------------ 301 (512)
++ .....+ + .. || .++++||
T Consensus 189 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~d~~iSR~~~~WGipvP~~~~~~~yvW~da~~~y~~~~~~~~~~ 268 (530)
T TIGR00398 189 SAFEKELEEWIRKNPESGSPASNVKNKAQNWLKGGLKDLAITRDLVYWGIPVPNDPNKVVYVWFDALIGYISSLGILSGD 268 (530)
T ss_pred HHHHHHHHHHHHhCCccCCCcHHHHHHHHHHHhCCCCCccccCcCCCCCeeCCCCCCcEEEEeecchHHhHhhhccccCC
Confidence 00 000000 0 00 11 1344444
Q ss_pred -------------------eeCcccchHHHHH-HHHHHcCCCCCCCCCCCceEEEEeEEEECCCCcceeeecCCeecHHH
Q 010356 302 -------------------TDVGQQLHFDMVF-SAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVD 361 (512)
Q Consensus 302 -------------------~g~~q~~hf~~l~-~~~~~~g~~~~~~~~~~~~~Hv~~g~V~~~~g~kmSkR~G~~v~l~d 361 (512)
.|.|...+.--.+ +++.++|+. +.. .|+.+|+|+.+ |+|||||+||+|+++|
T Consensus 269 ~~~~~~~w~~~~~~~~v~~~G~Di~~~h~~~~~a~l~~~~~~-----~~~--~~~~~g~v~~~-g~KmSKS~Gn~i~~~d 340 (530)
T TIGR00398 269 TEDWKKWWNNDEDAELIHFIGKDIVRFHTIYWPAMLMGLGLP-----LPT--QVFSHGYLTVE-GGKMSKSLGNVVDPSD 340 (530)
T ss_pred hhhHHHhCCCCCCceEEEEEecccchhHHHHHHHHHHhCCCC-----CCC--EEEeeccEEEC-CceecccCCceecHHH
Confidence 4444432211222 455667753 222 45567999965 9999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhchhhHHHHhhccC-CCCCccccccccccc-cCCchHHHHHHHHHHH
Q 010356 362 LLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNN-RLTNYTFSFDQMLND-KGNTAVYLLYAHARIC 439 (512)
Q Consensus 362 ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~airy~~L~~~-~~~~~~Fd~~~~~~~-~~~~g~ylqY~~aR~~ 439 (512)
++++ +|+|++||++++.. ..++++||++.+... +.+...+++|+++|+.
T Consensus 341 ~i~~-----------------------------~g~D~lR~~l~~~~~~~~d~~f~~~~l~~~~n~~l~~~l~n~~~r~~ 391 (530)
T TIGR00398 341 LLAR-----------------------------FGADILRYYLLKERPLGKDGDFSWEDFVERVNADLANKLGNLLNRTL 391 (530)
T ss_pred HHHH-----------------------------cCchHHHHHHhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9998 79999999999976 589999999997664 3455679999999999
Q ss_pred HHHHhhcCChhhhhhcCCCCCCCHHHHHHHHHHHhhHHHHHHHHHhcChHHHHHHHHHHHHHHhcchhccc
Q 010356 440 SIIRKSGKDIEELKKTGSLVLDHADERALGLHLLHFSEVIEEALTNLLPNVVCEYLYNLSEYFTRFYSNCQ 510 (512)
Q Consensus 440 sil~k~~~~~~~~~~~~~~~l~~~~e~~L~~~l~~~~~~v~~a~~~~~p~~l~~yl~~La~~fn~fY~~~~ 510 (512)
+++.+...+. ++. ....++.++.|+..+.++++.+.+++++++|+.+++++++++..+|.||+.++
T Consensus 392 ~~~~~~~~~~--~~~---~~~~~~~d~~ll~~l~~~~~~v~~a~e~~~~~~a~~~l~~l~~~~n~Yi~~~k 457 (530)
T TIGR00398 392 GFIKKYFNGV--LPS---EDITDEEDKKLLKLINEALEQIDEAIESFEFRKALREIMKLADRGNKYIDENK 457 (530)
T ss_pred HHHHHhcCCc--CCC---CcccchhhHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHhcCC
Confidence 9988753221 111 11224668899999999999999999999999999999999999999998764
No 23
>COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.1e-31 Score=283.61 Aligned_cols=338 Identities=18% Similarity=0.210 Sum_probs=242.2
Q ss_pred CceEEEEeeCCCCCCCCcccchhhhhHHHHHHHHHHHCCCeEEEeeccCccchHHHHHHHHHHhhCCCCCccCcccHHHH
Q 010356 84 VKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGEL 163 (512)
Q Consensus 84 ~~~v~Ve~~spNp~~~lHvGH~R~~iiGD~lar~l~~~G~~V~~~~~i~D~G~qi~~l~~~~~~~~~~~~~~~~~~i~~l 163 (512)
.++++|.-.=|.|||++||||+++++.+|++||++|.+|++|.++...+++|++|..-|..
T Consensus 4 ~~~~~VTtalpY~Ng~~HlGH~~~~l~ADv~aRy~Rl~G~~v~fvtGtDeHGt~I~~~A~~------------------- 64 (558)
T COG0143 4 MKKILVTTALPYPNGPPHLGHLYTYLAADVYARYLRLRGYEVFFLTGTDEHGTKIELKAEK------------------- 64 (558)
T ss_pred CCcEEEecCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCCeEEEEeccCCCCCHHHHHHHH-------------------
Confidence 4789999999999999999999999999999999999999999999999999987643311
Q ss_pred HHHHHHHhcccCCChHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHcCCeEeeec---cccccCchHHHH
Q 010356 164 QEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKG---ESFYNPYIPGVI 240 (512)
Q Consensus 164 ~~~y~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~L~I~f~~~~---es~~~~~v~~~~ 240 (512)
. +.+| +++++.+.+.|+++++.|||+||.+. ++.|.+.+++++
T Consensus 65 ---------~-g~tP------------------------~el~d~~~~~~~~~~~~l~IsfD~F~rTt~~~h~~~vq~~f 110 (558)
T COG0143 65 ---------E-GITP------------------------QELVDKNHEEFKELFKALNISFDNFIRTTSPEHKELVQEFF 110 (558)
T ss_pred ---------c-CCCH------------------------HHHHHHHHHHHHHHHHHhCCcccccccCCCHHHHHHHHHHH
Confidence 0 1222 56888999999999999999998653 356788999999
Q ss_pred HHHHhCCCeeee--CceEEEEec---------C------------C---------CC----CeEEEecCC------cccc
Q 010356 241 DELSKQGLVEES--QGARVIFIE---------G------------V---------NI----PLIIVKSDG------GFNY 278 (512)
Q Consensus 241 ~~L~~~g~~~~~--dGa~~~~~~---------g------------~---------~~----d~vl~ksDG------~~~Y 278 (512)
++|.++|++|.. .|.+|...+ | | .+ +-+-+.+.+ +..|
T Consensus 111 ~~L~~~G~I~~~~~~~~Yc~~~e~fl~dr~v~g~cp~cg~~~arGD~Ce~Cg~~~~P~~l~~p~~~i~g~~p~~r~~~hy 190 (558)
T COG0143 111 LKLYENGDIYLREYEGLYCVSCERFLPDRYVEGTCPKCGGEDARGDQCENCGRTLDPTELINPVCVISGATPEVREEEHY 190 (558)
T ss_pred HHHHHCCCEeccceeeeEcccccccccchheeccCCCcCccccCcchhhhccCcCCchhcCCCeeEeeCCCcccccceeE
Confidence 999999999964 577776542 1 0 00 111111222 2234
Q ss_pred ccc--hHHHH---HH-----------------HH----------h----h------cCCceEEEEeeCcccchHHHHHHH
Q 010356 279 AST--DLAAL---WY-----------------RL----------N----E------EKAEWIIYVTDVGQQLHFDMVFSA 316 (512)
Q Consensus 279 ~~~--DiA~~---~~-----------------k~----------~----~------~~~d~~iyV~g~~q~~hf~~l~~~ 316 (512)
+.+ ..... ++ .+ . . ...++++|||-....+|...+...
T Consensus 191 Ff~L~~~~~~L~~~~~~~~~~~~p~~~~ne~~~~i~~GL~d~~IsR~~~~WGipvP~~p~kv~YVWfDAligYisa~~~~ 270 (558)
T COG0143 191 FFRLSKFQDKLLEWYESNPDFIWPANRRNEVLNFLKEGLKDLSITRTDLDWGIPVPGDPGKVIYVWFDALIGYISALGEL 270 (558)
T ss_pred EEEHHHhHHHHHHHHHhCccccCChHHHHHHHHHHHccCcccceecCCCCCCccCCCCCCCEEEEeeccHHHHHHHhcch
Confidence 321 00000 00 00 0 0 234677777755444443333222
Q ss_pred HHHcCCCCCC-CCC---CCceEE-----------------------------EEeEEEECCCCcceeeecCCeecHHHHH
Q 010356 317 AKRAGWLSAD-DST---YPKASH-----------------------------VGFGLVLGEDGKRLRTRFSEVVRLVDLL 363 (512)
Q Consensus 317 ~~~~g~~~~~-~~~---~~~~~H-----------------------------v~~g~V~~~~g~kmSkR~G~~v~l~dll 363 (512)
.+ .|...++ +.| ..+++| +++|+++ .+|+|||||+||+|.+.+++
T Consensus 271 ~~-~~~~~~~~~~W~~~~~e~vhfIGKDii~FHav~wPamL~~~~~~lP~~i~ahg~l~-~~G~KmSKSrG~~V~~~~~~ 348 (558)
T COG0143 271 AE-IGDDEDFKKFWPADDTELVHFIGKDIIRFHAVYWPAMLMAAGLPLPTRIFAHGFLT-LEGQKMSKSRGNVVDPDELL 348 (558)
T ss_pred hc-cCChHHHHhhCCCCCceEEEEeccccCcchhhHHHHHHHhCCCCCCCEEEeeeeEE-ECCccccccCCcEEeHHHHH
Confidence 10 0110000 001 112233 2678888 56889999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhchhhHHHHhhccCC-CCCccccccccccc-cCCchHHHHHHHHHHHHH
Q 010356 364 DEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNR-LTNYTFSFDQMLND-KGNTAVYLLYAHARICSI 441 (512)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~airy~~L~~~~-~~~~~Fd~~~~~~~-~~~~g~ylqY~~aR~~si 441 (512)
++ +|+|++|||+++..| .+|.+|+|+.+.+. |.+..+-+++-.+|+.++
T Consensus 349 ~~-----------------------------~~~D~lRYyL~~~~p~~~D~dFs~~~f~~rvN~dL~n~lgNl~~R~~~f 399 (558)
T COG0143 349 EQ-----------------------------YGVDALRYYLARELPEGSDGDFSWEDFVERVNADLANKLGNLANRTLGF 399 (558)
T ss_pred HH-----------------------------cCchHhHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 98 799999999999987 78999999999884 777777777777999999
Q ss_pred HHhhcCChhhhhhcCCCCCCCHHHHHHHHHHHhhHHHHHHHHHhcChHHHHHHHHHHHHHHhcchhcc
Q 010356 442 IRKSGKDIEELKKTGSLVLDHADERALGLHLLHFSEVIEEALTNLLPNVVCEYLYNLSEYFTRFYSNC 509 (512)
Q Consensus 442 l~k~~~~~~~~~~~~~~~l~~~~e~~L~~~l~~~~~~v~~a~~~~~p~~l~~yl~~La~~fn~fY~~~ 509 (512)
..|...+.. +... ... .+.+.+++..+....+.+.++++.++.+++++-+++|+...|+|+++.
T Consensus 400 i~k~~~g~v--p~~~-~~~-~~~d~~~~~~~~~~~~~~~~~~e~~~~~~Al~~i~~l~~~~N~Yi~~~ 463 (558)
T COG0143 400 INKYFDGVV--PAAG-APD-LEEDEELLALAREALEAVAEAMEKYEFRKALEEIMALASRANKYIDEQ 463 (558)
T ss_pred HHhccCCcC--Cccc-ccc-chhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhcC
Confidence 999865532 2211 111 256778999999999999999999999999999999999999999865
No 24
>PRK00133 metG methionyl-tRNA synthetase; Reviewed
Probab=99.98 E-value=1.1e-30 Score=290.20 Aligned_cols=327 Identities=15% Similarity=0.167 Sum_probs=228.3
Q ss_pred ceEEEEeeCCCCCCCCcccchhhhhHHHHHHHHHHHCCCeEEEeeccCccchHHHHHHHHHHhhCCCCCccCcccHHHHH
Q 010356 85 KKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQ 164 (512)
Q Consensus 85 ~~v~Ve~~spNp~~~lHvGH~R~~iiGD~lar~l~~~G~~V~~~~~i~D~G~qi~~l~~~~~~~~~~~~~~~~~~i~~l~ 164 (512)
++++|.-.=|+|||++||||+|+++++|+++|++|..|++|.++.+.+|+|.++...+..
T Consensus 2 ~~~~itt~~py~ng~~HiGH~~~~l~aDv~aR~~r~~G~~V~~~~g~D~hG~~i~~~A~~-------------------- 61 (673)
T PRK00133 2 RKILVTCALPYANGPIHLGHLVEYIQADIWVRYQRMRGHEVLFVCADDAHGTPIMLKAEK-------------------- 61 (673)
T ss_pred CCEEEeCCCCCCCCcccccchHHHHHHHHHHHHHHhcCCeeEEeCccCCCChHHHHHHHH--------------------
Confidence 468898888999999999999999999999999999999999999999988877533211
Q ss_pred HHHHHHhcccCCChHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHcCCeEeeec---cccccCchHHHHH
Q 010356 165 EFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKG---ESFYNPYIPGVID 241 (512)
Q Consensus 165 ~~y~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~L~I~f~~~~---es~~~~~v~~~~~ 241 (512)
.+.+| +++++.+.+.|++++++|||.+|++. +..|.+.++++++
T Consensus 62 ---------~g~~p------------------------~e~~~~~~~~~~~~~~~l~i~~d~f~rtt~~~h~~~v~~~~~ 108 (673)
T PRK00133 62 ---------EGITP------------------------EELIARYHAEHKRDFAGFGISFDNYGSTHSEENRELAQEIYL 108 (673)
T ss_pred ---------cCCCH------------------------HHHHHHHHHHHHHHHHHhCCCCCCCccCCcHHHHHHHHHHHH
Confidence 01121 45788899999999999999997653 3458889999999
Q ss_pred HHHhCCCeeeeCceEEEEec-----------------------CCCCC--------eEEE----ecCCc-------cccc
Q 010356 242 ELSKQGLVEESQGARVIFIE-----------------------GVNIP--------LIIV----KSDGG-------FNYA 279 (512)
Q Consensus 242 ~L~~~g~~~~~dGa~~~~~~-----------------------g~~~d--------~vl~----ksDG~-------~~Y~ 279 (512)
+|.++|++|+.++.+|+... |+.-+ .-|+ ...|+ ..|+
T Consensus 109 ~L~~~G~iy~~~~~~~y~~~~~~~l~~~~v~g~cp~C~~~d~~g~~ce~cg~~~~~~~l~~~~~~~~g~~~e~~~~~~~f 188 (673)
T PRK00133 109 KLKENGYIYEKTIEQLYDPEKGMFLPDRFVKGTCPKCGAEDQYGDNCEVCGATYSPTELINPKSAISGATPVLKESEHFF 188 (673)
T ss_pred HHHHCCCEEEeeeEEEEeCCCCCCccchheecccCCCCCcccCCchhhhccccCChHhhcCCccccCCCcceEEecceEE
Confidence 99999999987766665421 10000 0000 00010 0111
Q ss_pred cc--hHH----HHHH---------------------------HHhhc-------CCceEEEEe-----------------
Q 010356 280 ST--DLA----ALWY---------------------------RLNEE-------KAEWIIYVT----------------- 302 (512)
Q Consensus 280 ~~--DiA----~~~~---------------------------k~~~~-------~~d~~iyV~----------------- 302 (512)
.+ +.+ -++. |-..| ..+++||||
T Consensus 189 ~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~d~~ISR~~~W~GipvP~~~~~~iyVW~dal~~Yl~~~~~~~~~ 268 (673)
T PRK00133 189 FKLPRFEEFLKEWITRSGELQPNVANKMKEWLEEGLQDWDISRDAPYFGFEIPGAPGKVFYVWLDAPIGYISSTKNLCDK 268 (673)
T ss_pred EEHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhCCCcccceeeeCCccceECCCCCCeEEEEcccchhhhhHHHhhhccc
Confidence 10 000 0000 00012 123455554
Q ss_pred ----------------------eCcccchHHHHH-HHHHHcCCCCCCCCCCCceEEEEeEEEECCCCcceeeecCCeecH
Q 010356 303 ----------------------DVGQQLHFDMVF-SAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRL 359 (512)
Q Consensus 303 ----------------------g~~q~~hf~~l~-~~~~~~g~~~~~~~~~~~~~Hv~~g~V~~~~g~kmSkR~G~~v~l 359 (512)
|.|...++...+ +++.++|+. +.. ..+.+|+|+. +|+|||||+||+|++
T Consensus 269 ~~~~~~~~~w~~~~~~~~v~~iGkDi~~fH~i~wpa~l~a~g~~-----lP~--~v~~hg~v~~-~G~KMSKS~GNvV~p 340 (673)
T PRK00133 269 RGGLDWDEYWKKDSDTELYHFIGKDIIYFHTLFWPAMLEGAGYR-----LPT--NVFAHGFLTV-EGAKMSKSRGTFIWA 340 (673)
T ss_pred ccchhHHHhcCCCCCceEEEEEeecchhHHHHHHHHHHHhCCCC-----CCC--EEeeeccEEe-cCCcccccCCcccCH
Confidence 443322111222 345556663 222 2346799996 899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhchhhHHHHhhccCC-C-CCcccccccccc-ccCCchHHHHHHHH
Q 010356 360 VDLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNR-L-TNYTFSFDQMLN-DKGNTAVYLLYAHA 436 (512)
Q Consensus 360 ~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~airy~~L~~~~-~-~~~~Fd~~~~~~-~~~~~g~ylqY~~a 436 (512)
.|++++ +|+|++|||+++..+ . +|.+|||+.+.. .+.+...-+.+...
T Consensus 341 ~dlie~-----------------------------ygaDalR~~ll~~~~~~~~D~~Fs~~~~~~~~n~~l~~~l~Nl~~ 391 (673)
T PRK00133 341 RTYLDH-----------------------------LDPDYLRYYLAAKLPETIDDLDFNWEDFQQRVNSELVGKVVNFAS 391 (673)
T ss_pred HHHHHH-----------------------------cCchHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999998 799999999998876 4 699999998754 34444544444445
Q ss_pred HHHHHHHhhcCChhhhhhcCCCCCCCHHHHHHHHHHHhhHHHHHHHHHhcChHHHHHHHHHHHHHHhcchhccc
Q 010356 437 RICSIIRKSGKDIEELKKTGSLVLDHADERALGLHLLHFSEVIEEALTNLLPNVVCEYLYNLSEYFTRFYSNCQ 510 (512)
Q Consensus 437 R~~sil~k~~~~~~~~~~~~~~~l~~~~e~~L~~~l~~~~~~v~~a~~~~~p~~l~~yl~~La~~fn~fY~~~~ 510 (512)
|+.+++++...+. ++ ..+.+++|+..+.++++.+.+++++++|+.+++++++++..+|.|++.++
T Consensus 392 R~~~~~~k~~~~~--~~-------~~~~d~~ll~~l~~~~~~v~~a~e~~~~~~a~~~l~~l~~~~N~yi~~~k 456 (673)
T PRK00133 392 RTAGFINKRFDGK--LP-------DALADPELLEEFEAAAEKIAEAYEAREFRKALREIMALADFANKYVDDNE 456 (673)
T ss_pred HHHHHHHHhcCCC--CC-------CCcccHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999988754221 11 13447889999999999999999999999999999999999999998764
No 25
>PLN02224 methionine-tRNA ligase
Probab=99.97 E-value=2.1e-29 Score=273.84 Aligned_cols=330 Identities=15% Similarity=0.203 Sum_probs=230.2
Q ss_pred CCCceEEEEeeCCCCCCCCcccchhhhhHHHHHHHHHHHCCCeEEEeeccCccchHHHHHHHHHHhhCCCCCccCcccHH
Q 010356 82 LRVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIG 161 (512)
Q Consensus 82 ~~~~~v~Ve~~spNp~~~lHvGH~R~~iiGD~lar~l~~~G~~V~~~~~i~D~G~qi~~l~~~~~~~~~~~~~~~~~~i~ 161 (512)
+++++++|.-.-|+|||++||||+|+++++|+++|++|++||+|.++.+++|+|.+|..-+..
T Consensus 66 ~~~~~~~ittp~pY~NG~~HiGHa~~~~~aDviaR~~r~~G~~V~fv~G~DehG~kI~~~A~~----------------- 128 (616)
T PLN02224 66 DEADTFVLTTPLYYVNAPPHMGSAYTTIAADSIARFQRLLGKKVIFITGTDEHGEKIATSAAA----------------- 128 (616)
T ss_pred CCCCeEEEeCCCCCCCCCCchhccHHHHHHHHHHHHHHhcCCceEEecCcCCcchHHHHHHHH-----------------
Confidence 456789998888899999999999999999999999999999999999999999887633210
Q ss_pred HHHHHHHHHhcccCCChHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHcCCeEeee---ccccccCchHH
Q 010356 162 ELQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEK---GESFYNPYIPG 238 (512)
Q Consensus 162 ~l~~~y~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~L~I~f~~~---~es~~~~~v~~ 238 (512)
. +.+| +++|+.+...|++.+++|||.+|.+ .+..|.+.+++
T Consensus 129 -----------~-g~~p------------------------~e~~~~~~~~~~~~~~~l~I~~D~f~rTt~~~h~~~vq~ 172 (616)
T PLN02224 129 -----------N-GRNP------------------------PEHCDIISQSYRTLWKDLDIAYDKFIRTTDPKHEAIVKE 172 (616)
T ss_pred -----------c-CCCh------------------------HHHHHHHHHHHHHHHHHcCCCCCcCeeCCCHHHHHHHHH
Confidence 0 0111 3467777788999999999999744 24567889999
Q ss_pred HHHHHHhCCCeeee--CceEEEEecC--CCCC------------eEEEecCCccccccc---------------------
Q 010356 239 VIDELSKQGLVEES--QGARVIFIEG--VNIP------------LIIVKSDGGFNYAST--------------------- 281 (512)
Q Consensus 239 ~~~~L~~~g~~~~~--dGa~~~~~~g--~~~d------------~vl~ksDG~~~Y~~~--------------------- 281 (512)
++.+|.++|++|+. .|.+|..++- ++.+ .+.+++. ..|+.+
T Consensus 173 ~f~~L~~~G~Iy~~~~~~~yc~~ce~f~~~~~l~~~~~~~~~~~~~~~~~e--~~~ff~Ls~~~~~L~~~~~~~~~~~~p 250 (616)
T PLN02224 173 FYARVFANGDIYRADYEGLYCVNCEEYKDEKELLENNCCPVHQMPCVARKE--DNYFFALSKYQKPLEDILAQNPRFVQP 250 (616)
T ss_pred HHHHHHHCCCEEEeeeeeeecCCCCCCCCHHHHcCCCCCCCCCCcceEEec--ceEEEEhHHHHHHHHHHHHhCCCccCC
Confidence 99999999999975 4566654430 0000 0001110 111110
Q ss_pred ----------------hHHHHHHHHhhc------CCceEEEEe-----------------------------------eC
Q 010356 282 ----------------DLAALWYRLNEE------KAEWIIYVT-----------------------------------DV 304 (512)
Q Consensus 282 ----------------DiA~~~~k~~~~------~~d~~iyV~-----------------------------------g~ 304 (512)
|++-.+... .| ..+++|||| |.
T Consensus 251 ~~~~~~~~~~l~~gL~d~~ISR~~~-~WGIpvP~~~~~viYVWfDAl~~Yls~~~~~~~~~~~~~~~~~~w~~~v~~iGK 329 (616)
T PLN02224 251 SYRLNEVQSWIKSGLRDFSISRALV-DWGIPVPDDDKQTIYVWFDALLGYISALTEDNKQQNLETAVSFGWPASLHLIGK 329 (616)
T ss_pred HHHHHHHHHHHhcCCCCccccCCCC-CCceECCCCCCcEEEEehhhHHHHHHHhcccccccccchhhccCCCcceEEEee
Confidence 000000000 01 123555554 33
Q ss_pred cccchHHHHH-HHHHHcCCCCCCCCCCCceEEEEeEEEECCCCcceeeecCCeecHHHHHHHHHHHHHHHHHHhcCCCCC
Q 010356 305 GQQLHFDMVF-SAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAKNRSKAVLIERGKDKEW 383 (512)
Q Consensus 305 ~q~~hf~~l~-~~~~~~g~~~~~~~~~~~~~Hv~~g~V~~~~g~kmSkR~G~~v~l~dll~~~~~~~~~~~~~~~~~~~~ 383 (512)
|...+...++ +++.++|+. +...+ +.+|++. .+|+|||||+||+|++.|++++
T Consensus 330 Dii~fH~i~wpa~l~~~g~~-----~P~~i--~~~g~l~-~eG~KMSKS~GN~i~p~e~l~~------------------ 383 (616)
T PLN02224 330 DILRFHAVYWPAMLMSAGLE-----LPKMV--FGHGFLT-KDGMKMGKSLGNTLEPFELVQK------------------ 383 (616)
T ss_pred cccccHHHHHHHHHHHCCCC-----CCcEE--EecccEe-cCCccccccCCccCCHHHHHHH------------------
Confidence 3322112222 333445552 33333 3457776 6899999999999999999988
Q ss_pred CHHHHHHHHHhhchhhHHHHhhccCC-CCCcccccccccc-ccCCchHHHHHHHHHHHHHHHhhcCChhhhhhcCCCCCC
Q 010356 384 TEEELEQTAEAVGYGAAKYFDLKNNR-LTNYTFSFDQMLN-DKGNTAVYLLYAHARICSIIRKSGKDIEELKKTGSLVLD 461 (512)
Q Consensus 384 ~~~~~~~~a~~~~~~airy~~L~~~~-~~~~~Fd~~~~~~-~~~~~g~ylqY~~aR~~sil~k~~~~~~~~~~~~~~~l~ 461 (512)
+|+|++|||+++..+ .++.+|+++.+.. .+.+...-+++.+.|+.++..+...+.. +. + ...
T Consensus 384 -----------ygaD~~R~yLl~~~p~~~d~~fs~~~~~~~~NseLan~lgNll~R~l~~~~k~~~~~~--~~-~-~~~- 447 (616)
T PLN02224 384 -----------FGPDAVRYFFLREVEFGNDGDYSEDRFIKIVNAHLANTIGNLLNRTLGLLKKNCESTL--VE-D-STV- 447 (616)
T ss_pred -----------cCcHHHHHHHHhcCCCcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcC--CC-c-ccc-
Confidence 799999999999865 7889999998765 3556666777778899988887643321 11 1 111
Q ss_pred CHHHHHHHHHHHhhHHHHHHHHHhcChHHHHHHHHHHHHHHhcchhcc
Q 010356 462 HADERALGLHLLHFSEVIEEALTNLLPNVVCEYLYNLSEYFTRFYSNC 509 (512)
Q Consensus 462 ~~~e~~L~~~l~~~~~~v~~a~~~~~p~~l~~yl~~La~~fn~fY~~~ 509 (512)
.+.+..|+..+.+..+.+.+++++++++.+++.+++++...|.|++.+
T Consensus 448 ~~~d~~l~~~l~~li~~v~~~me~~~~~~Al~~i~el~~~~N~Yi~~~ 495 (616)
T PLN02224 448 AAEGVPLKDTVEKLVEKAQTNYENLSLSSACEAVLEIGNAGNTYMDQR 495 (616)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhC
Confidence 233457889999999999999999999999999999999999998865
No 26
>PRK12268 methionyl-tRNA synthetase; Reviewed
Probab=99.97 E-value=1.4e-29 Score=276.68 Aligned_cols=332 Identities=14% Similarity=0.111 Sum_probs=227.6
Q ss_pred ceEEEEeeCCCCCCCCcccchhhh-hHHHHHHHHHHHCCCeEEEeeccCccchHHHHHHHHHHhhCCCCCccCcccHHHH
Q 010356 85 KKAVVDFSSPNIAKEMHVGHLRST-IIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGEL 163 (512)
Q Consensus 85 ~~v~Ve~~spNp~~~lHvGH~R~~-iiGD~lar~l~~~G~~V~~~~~i~D~G~qi~~l~~~~~~~~~~~~~~~~~~i~~l 163 (512)
++++|.-.-|+|||.+||||+|+. ++.|+++|++|+.|++|.++.+++|+|..+..-+
T Consensus 3 ~~~~i~~~~py~ng~~HiGH~~~~~~~~D~~~R~~r~~G~~v~~~~g~d~~g~~i~~~a--------------------- 61 (556)
T PRK12268 3 MRILITSAWPYANGPLHLGHLAGSGLPADVFARYQRLKGNEVLFVSGSDEHGTPIELAA--------------------- 61 (556)
T ss_pred CcEEEecCCCCCCCCccccccccchhHHHHHHHHHHhcCCceEecCcCCCcccHHHHHH---------------------
Confidence 468899999999999999999999 9999999999999999999999999887664322
Q ss_pred HHHHHHHhcccCCChHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHcCCeEeeecc---ccccCchHHHH
Q 010356 164 QEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKGE---SFYNPYIPGVI 240 (512)
Q Consensus 164 ~~~y~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~L~I~f~~~~e---s~~~~~v~~~~ 240 (512)
.+. ..+ ++++++.+.+.|++++++|||.+|++.. ..|.+.+++++
T Consensus 62 -------~~~-g~~------------------------~~~~~~~~~~~~~~~~~~l~i~~d~~~~t~~~~~~~~~~~~~ 109 (556)
T PRK12268 62 -------KKE-GVT------------------------PQELADKYHEEHKEDFKKLGISYDLFTRTTSPNHHEVVQEFF 109 (556)
T ss_pred -------HHc-CCC------------------------HHHHHHHHHHHHHHHHHHcCCcCCCCcCCCCHHHHHHHHHHH
Confidence 110 111 1356788889999999999999976532 36788899999
Q ss_pred HHHHhCCCeeeeCceEEEEec-----------C------------CC----------------------CCeE-------
Q 010356 241 DELSKQGLVEESQGARVIFIE-----------G------------VN----------------------IPLI------- 268 (512)
Q Consensus 241 ~~L~~~g~~~~~dGa~~~~~~-----------g------------~~----------------------~d~v------- 268 (512)
++|.++|++|+.++.+++... | +. .+.+
T Consensus 110 ~~L~~~G~~y~~~~~~~~~~~~~~~l~~~~v~g~cp~c~~~~~~G~~ce~cg~~~~~~~l~~p~~~~~~~~~e~~~~~qw 189 (556)
T PRK12268 110 LKLYENGYIYKKTIEQAYCPSDGRFLPDRYVEGTCPYCGYEGARGDQCDNCGALLDPTDLINPRSKISGSTPEFRETEHF 189 (556)
T ss_pred HHHHHCCCeEEeeeEEEecCCCCcCcCccceeccCCCCCCcccCCchhhhccccCChHHhcCCccccCCCcCeEEecceE
Confidence 999999999987665555321 1 00 0000
Q ss_pred -----------------------------------------EEe------------cCCccccccchH--HHH---HH--
Q 010356 269 -----------------------------------------IVK------------SDGGFNYASTDL--AAL---WY-- 288 (512)
Q Consensus 269 -----------------------------------------l~k------------sDG~~~Y~~~Di--A~~---~~-- 288 (512)
+-| .+|.+.|..-|- ++. ..
T Consensus 190 F~~l~~~~~~l~~~~~~~~~~p~~~~~~~~~~l~~~l~Dw~ISR~~~WGipiP~~~~~~~~iyvW~da~~~y~~~~~~~~ 269 (556)
T PRK12268 190 FLDLPAFAERLRAWIESSGDWPPNVLNFTLNWLKEGLKPRAITRDLDWGIPVPWPGFEGKVFYVWFDAVIGYISASKEWA 269 (556)
T ss_pred EEEhHHHHHHHHHHHhhccCCCHHHHHHHHHHHhCCCCCcCceeeCCCCeeCCCCCCCCcEEEEeehHhhHHHHHHHHHH
Confidence 000 011112222120 000 00
Q ss_pred H-------Hh-hc-CC-ceEEEEeeCcccchHHHHH-HHHHHcCCCCCCCCCCCceEEEEeEEEECCCCcceeeecCCee
Q 010356 289 R-------LN-EE-KA-EWIIYVTDVGQQLHFDMVF-SAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVV 357 (512)
Q Consensus 289 k-------~~-~~-~~-d~~iyV~g~~q~~hf~~l~-~~~~~~g~~~~~~~~~~~~~Hv~~g~V~~~~g~kmSkR~G~~v 357 (512)
+ +. -| .. ...+.+.|.|+..++..++ .++.+.|... .++ ..++.+|+|+. +|+|||||+||+|
T Consensus 270 ~~~g~~~~~~~~w~ds~~~~~~~~G~D~~~Fh~~~~p~~l~~~~~~~---~~P--~~v~~~G~v~~-~G~KMSKS~GN~I 343 (556)
T PRK12268 270 ERTGDPEAWKEFWLDPETKSYYFIGKDNIPFHSIIWPAMLLGSGEPL---KLP--DEIVSSEYLTL-EGGKFSKSRGWGI 343 (556)
T ss_pred HhcCCchHHHHHhCCCCCeEEEEEeeccCcchHHHHHHHHHhcCCCC---CCC--CEeeccCCEEE-CCeeeccCCCccc
Confidence 0 00 00 00 0123444554433222233 3445555210 122 25667799884 7999999999999
Q ss_pred cHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhchhhHHHHhhccCC-CCCccccccccccc-cCCchHHHHHHH
Q 010356 358 RLVDLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNR-LTNYTFSFDQMLND-KGNTAVYLLYAH 435 (512)
Q Consensus 358 ~l~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~airy~~L~~~~-~~~~~Fd~~~~~~~-~~~~g~ylqY~~ 435 (512)
++.|++++ +|+||+||++++..+ ..+++||++.+... +.+....+.+..
T Consensus 344 ~p~dli~~-----------------------------yGaDalR~~ll~~~~~~~d~~f~~~~~~~~~~~~~~~~l~n~~ 394 (556)
T PRK12268 344 WVDDALER-----------------------------YPPDYLRYYLAANAPENSDTDFTWEEFVRRVNSELADKYGNLV 394 (556)
T ss_pred CHHHHHHH-----------------------------cCcHHHHHHHHhcCCCCCCCCCCHHHHHHHHhHHhhhhHHHHH
Confidence 99999998 799999999998865 68999999987543 333333344444
Q ss_pred HHHHHHHHhhcCChhhhhhcCCCCCCCHHHHHHHHHHHhhHHHHHHHHHhcChHHHHHHHHHHHHHHhcchhccc
Q 010356 436 ARICSIIRKSGKDIEELKKTGSLVLDHADERALGLHLLHFSEVIEEALTNLLPNVVCEYLYNLSEYFTRFYSNCQ 510 (512)
Q Consensus 436 aR~~sil~k~~~~~~~~~~~~~~~l~~~~e~~L~~~l~~~~~~v~~a~~~~~p~~l~~yl~~La~~fn~fY~~~~ 510 (512)
+|+.+++++...+. ++ ... .++.++.|+..+..+++.+.+++++++++.++++++++++.+|.|++..+
T Consensus 395 ~r~~~~~~~~~~~~--~~---~~~-~~~~d~~ll~~l~~~~~~v~~~~~~~~~~~a~~~l~~~~~~~n~yi~~~k 463 (556)
T PRK12268 395 NRVLSFIEKYFGGI--VP---PGE-LGDEDRELIAEAEALFKEVGELLEAGEFKKALEEIMELAREANKYLDEKA 463 (556)
T ss_pred HHHHHHHHHhcCCc--CC---CCc-CCcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHcCC
Confidence 79999988753221 11 111 24567899999999999999999999999999999999999999998654
No 27
>KOG2007 consensus Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=7.1e-30 Score=258.76 Aligned_cols=329 Identities=15% Similarity=0.140 Sum_probs=237.0
Q ss_pred CCCceEEEEeeCCCCCCCCcccchhhhhHHHHHHHHHH-HCCCeEEEeeccCccchHHHHHHHHHHhhCCCCCccCcccH
Q 010356 82 LRVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLE-FSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAI 160 (512)
Q Consensus 82 ~~~~~v~Ve~~spNp~~~lHvGH~R~~iiGD~lar~l~-~~G~~V~~~~~i~D~G~qi~~l~~~~~~~~~~~~~~~~~~i 160 (512)
..+++|-.+.|+|+++...||||+|++|-.|+|.|+|+ +.||+|+++.+|+|. +|
T Consensus 51 ~~~~~v~wY~CGpTvYD~SHmGHArsYVsfDIlrRiL~dyfgy~V~~vmNiTDV----------------------DD-- 106 (586)
T KOG2007|consen 51 NNGNKVTWYICGPTVYDSSHMGHARSYVSFDILRRILRDYFGYDVTFVMNITDV----------------------DD-- 106 (586)
T ss_pred CCCCeEEEEEecCcccchhhhhhhhhhhhHHHHHHHHHHHcCcceEEEecccch----------------------hH--
Confidence 35778999999999999999999999999999999999 999999999999993 23
Q ss_pred HHHHHHHHHHhc-ccCCChHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHcCCeE-eeecc-ccccCchH
Q 010356 161 GELQEFYRRSKN-RFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDL-EEKGE-SFYNPYIP 237 (512)
Q Consensus 161 ~~l~~~y~~~~~-~~~~~~~~~~~~~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~L~I~f-~~~~e-s~~~~~v~ 237 (512)
+|+.+|++ .+.+.| ..|.+.-..+.++|.+++.+|+|-. +..+. |.|.+.|.
T Consensus 107 ----KII~RAr~~~m~e~~---------------------~~l~~~F~~~e~eF~~DM~~LnvLpPtv~tRVSeyvp~II 161 (586)
T KOG2007|consen 107 ----KIIKRARKEEMGEKP---------------------LSLSERFCYYEEEFLQDMAALNVLPPTVQTRVSEYVPQII 161 (586)
T ss_pred ----HHHHHhhhhhhccch---------------------hhHHHHHHHHHHHHHHHHHHhCCCCCcccchhhhchHHHH
Confidence 55566642 122222 2333322266689999999999997 66555 88999999
Q ss_pred HHHHHHHhCCCeeeeCceEEEEec----------CC------------------CCCeEEEec--CCccccccch----H
Q 010356 238 GVIDELSKQGLVEESQGARVIFIE----------GV------------------NIPLIIVKS--DGGFNYASTD----L 283 (512)
Q Consensus 238 ~~~~~L~~~g~~~~~dGa~~~~~~----------g~------------------~~d~vl~ks--DG~~~Y~~~D----i 283 (512)
..|++++++|++|..||.|||++. |+ ..|+.|||+ .|.|.|.+++ .
T Consensus 162 ~fIqkIIdnG~aY~~dGsVYFdv~kf~~~YgKL~G~~~~~~~gEg~l~ds~KR~p~DFALWKAsK~gEP~WeSPWG~GRP 241 (586)
T KOG2007|consen 162 KFIQKIIDNGYAYAVDGSVYFDVDKFPHSYGKLVGQRKNLQEGEGVLSDSRKRSPADFALWKASKPGEPSWESPWGKGRP 241 (586)
T ss_pred HHHHHHHhCCceeeeCCcEEEecccccchhhhhcCchhhcccCcCccccccCCChhhhhhhhhcCCCCCCCCCCCCCCCC
Confidence 999999999999999999999875 10 136778875 7888888875 4
Q ss_pred HHHHHHH--hhcCCceEEEEeeCcccchHHHH---HHHHHHcCCCCCCCCCCCceEEEEeEEEECCCCcceeeecCCeec
Q 010356 284 AALWYRL--NEEKAEWIIYVTDVGQQLHFDMV---FSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVR 358 (512)
Q Consensus 284 A~~~~k~--~~~~~d~~iyV~g~~q~~hf~~l---~~~~~~~g~~~~~~~~~~~~~Hv~~g~V~~~~g~kmSkR~G~~v~ 358 (512)
+||+.+- ..--+...++|+|++-++-||+. .+..++. +.. +.|...|.|. |.|. -+|.|||||.+|+++
T Consensus 242 GWHIECSaMas~~lG~~lDIH~GG~DL~FPHHeNEiAQ~eA~-~~~--~~wVnYflHt--GhL~-i~g~KMSKSLkNFiT 315 (586)
T KOG2007|consen 242 GWHIECSAMASAILGSQLDIHGGGIDLAFPHHENEIAQSEAA-FDD--SQWVNYFLHT--GHLT-INGEKMSKSLKNFIT 315 (586)
T ss_pred CceeeeHHHHHHhhccccceecCcccccCCCcccHHHHHHHH-hcC--CccceeEEEc--Ceee-eccchhhhhhcccee
Confidence 5555431 11112345789999999888853 2223332 211 2589999999 6677 468999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhchhhHHHHhhccCCCCCcccccccccc---ccCCchHHHHHHH
Q 010356 359 LVDLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNRLTNYTFSFDQMLN---DKGNTAVYLLYAH 435 (512)
Q Consensus 359 l~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~airy~~L~~~~~~~~~Fd~~~~~~---~~~~~g~ylqY~~ 435 (512)
+.|+|+. +.+.++|.++|..+.+++++|+-..+.. ++.-...|. +
T Consensus 316 Ike~Lk~-----------------------------~sp~qLRl~fl~~~wr~~ldYs~s~m~~a~q~e~~~~~ff-~-- 363 (586)
T KOG2007|consen 316 IKEALKK-----------------------------YSPRQLRLAFLLHQWRSPLDYSDSTMEQALQLEKSLNNFF-L-- 363 (586)
T ss_pred HHHHHHh-----------------------------cCHHHHHHHHHHHHhcCcCCchHHHHHHHHHHHHHHHHHH-H--
Confidence 9999998 7999999999999999999998774432 222111111 0
Q ss_pred HHHHHHHHhhcCChhhhhhcCCCCCCCHHHHHHHHHHHhhHHHHHHHH-HhcChHHHHHHHHHHHHHHhcchhc
Q 010356 436 ARICSIIRKSGKDIEELKKTGSLVLDHADERALGLHLLHFSEVIEEAL-TNLLPNVVCEYLYNLSEYFTRFYSN 508 (512)
Q Consensus 436 aR~~sil~k~~~~~~~~~~~~~~~l~~~~e~~L~~~l~~~~~~v~~a~-~~~~p~~l~~yl~~La~~fn~fY~~ 508 (512)
-+..+.+.. . .+.. ..+.|.+|...+..-...+..|. +++.-..+.+.+.+|.+..|.|...
T Consensus 364 -~~~al~~~~--~-------~~~~-~~~~e~~l~~~~~~t~~~vh~al~d~~dT~~v~~~~~~lvs~~N~~i~~ 426 (586)
T KOG2007|consen 364 -DVKALLRGA--K-------PFEK-LSEKEAELLEDFGKTQTAVHAALCDNFDTPRVMEAIRELVSQGNAYIRE 426 (586)
T ss_pred -HHHHHHhcc--c-------hhhc-cChHHHHHHHhhhhHHHHHHHHHHhccccHHHHHHHHHHHhhhhHHHHH
Confidence 011111110 0 0111 25677788888877777776654 5677788888888888888877643
No 28
>PRK12267 methionyl-tRNA synthetase; Reviewed
Probab=99.97 E-value=5.8e-29 Score=275.82 Aligned_cols=327 Identities=17% Similarity=0.162 Sum_probs=230.6
Q ss_pred ceEEEEeeCCCCCCCCcccchhhhhHHHHHHHHHHHCCCeEEEeeccCccchHHHHHHHHHHhhCCCCCccCcccHHHHH
Q 010356 85 KKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQ 164 (512)
Q Consensus 85 ~~v~Ve~~spNp~~~lHvGH~R~~iiGD~lar~l~~~G~~V~~~~~i~D~G~qi~~l~~~~~~~~~~~~~~~~~~i~~l~ 164 (512)
+++.|.-.-|+|||++||||+|+++++|+++|++|.+|++|.++.+.+|+|..|..-+.
T Consensus 4 ~~~~it~~~py~ng~~HiGH~~~~~~aDv~~R~~r~~G~~v~~~~g~D~~g~~i~~~A~--------------------- 62 (648)
T PRK12267 4 KTFYITTPIYYPNGKPHIGHAYTTIAADALARYKRLQGYDVFFLTGTDEHGQKIQQAAE--------------------- 62 (648)
T ss_pred CCEEEeeCCCCCCCCcccccchHHHHHHHHHHHHHhcCCceEeecCCCCcchHHHHHHH---------------------
Confidence 47889999999999999999999999999999999999999999999999887643221
Q ss_pred HHHHHHhcccCCChHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHcCCeEeee-cc--ccccCchHHHHH
Q 010356 165 EFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEK-GE--SFYNPYIPGVID 241 (512)
Q Consensus 165 ~~y~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~L~I~f~~~-~e--s~~~~~v~~~~~ 241 (512)
+ .+.+| +++++.+.+.|+++|++|||.||++ ++ ..|.+.++++++
T Consensus 63 -------~-~g~~~------------------------~e~~d~~~~~fk~~l~~lgI~~D~f~rTt~~~h~~~v~~~~~ 110 (648)
T PRK12267 63 -------K-AGKTP------------------------QEYVDEISAGFKELWKKLDISYDKFIRTTDERHKKVVQKIFE 110 (648)
T ss_pred -------H-cCCCH------------------------HHHHHHHHHHHHHHHHHcCCCCCCCeeCCCHHHHHHHHHHHH
Confidence 1 01111 4578899999999999999999743 33 346788999999
Q ss_pred HHHhCCCeeee--CceEEEEecCC---------------CCCeEEEecCCcccccc------------------------
Q 010356 242 ELSKQGLVEES--QGARVIFIEGV---------------NIPLIIVKSDGGFNYAS------------------------ 280 (512)
Q Consensus 242 ~L~~~g~~~~~--dGa~~~~~~g~---------------~~d~vl~ksDG~~~Y~~------------------------ 280 (512)
+|.++|++|.. .|.+|..++.. ..+.+++.. ..|+.
T Consensus 111 ~L~~kG~IY~~~~~~~yc~~~~~~l~~~~l~~~~~c~~cg~~~e~~~~---~~~f~~l~~~~~~l~~~~~~~~~~~~p~~ 187 (648)
T PRK12267 111 KLYEQGDIYKGEYEGWYCVSCETFFTESQLVDGGKCPDCGREVELVKE---ESYFFRMSKYQDRLLEYYEENPDFIQPES 187 (648)
T ss_pred HHHHCCCEEEeeEEEeecCCCCccCChHHhccCCcCCCCCCcCeEEec---ceEEEEcHHHHHHHHHHHhhCCcccCCHH
Confidence 99999999975 46665543210 001111000 01110
Q ss_pred --------------chHHHHHHHHhhc------CCceEEEEe--------------------------------eCcccc
Q 010356 281 --------------TDLAALWYRLNEE------KAEWIIYVT--------------------------------DVGQQL 308 (512)
Q Consensus 281 --------------~DiA~~~~k~~~~------~~d~~iyV~--------------------------------g~~q~~ 308 (512)
+|++-.+.++ .| ..++++||| |.|+..
T Consensus 188 ~~~~~~~~~l~~~l~D~~ISR~~~-~WGipvP~~~~~v~yVWfDA~~~y~s~~~~~~~~~~~~~~~wp~~~~~~GkDii~ 266 (648)
T PRK12267 188 RKNEMINNFIKPGLEDLSISRTSF-DWGIPVPFDPKHVVYVWIDALLNYITALGYGSDDDELFKKFWPADVHLVGKDILR 266 (648)
T ss_pred HHHHHHHHHhhCCCCCcccCCCCC-CcceECCCCCCCEEEEcccchHHHHHHcCCCCCCchHHHhhcccceEEEeeeecc
Confidence 0111000000 01 124566664 333332
Q ss_pred hHHHHH-HHHHHcCCCCCCCCCCCceEEEEeEEEECCCCcceeeecCCeecHHHHHHHHHHHHHHHHHHhcCCCCCCHHH
Q 010356 309 HFDMVF-SAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAKNRSKAVLIERGKDKEWTEEE 387 (512)
Q Consensus 309 hf~~l~-~~~~~~g~~~~~~~~~~~~~Hv~~g~V~~~~g~kmSkR~G~~v~l~dll~~~~~~~~~~~~~~~~~~~~~~~~ 387 (512)
++--.+ +++.++|+.+ ...+ +.+|+++. +|+|||||+||+|++.|+++.
T Consensus 267 fH~i~wpa~l~~~~~~~-----p~~v--~~hg~l~~-eg~KMSKS~GN~i~p~d~l~~---------------------- 316 (648)
T PRK12267 267 FHAIYWPIMLMALGLPL-----PKKV--FAHGWWLM-KDGKMSKSKGNVVDPEELVDR---------------------- 316 (648)
T ss_pred hhHHHHHHHHHhCCCCC-----CcEE--EecceEEE-CCceecccCCcccCHHHHHHH----------------------
Confidence 111222 4455667632 2222 35688884 689999999999999999998
Q ss_pred HHHHHHhhchhhHHHHhhccC-CCCCcccccccccc-ccCCchHHHHHHHHHHHHHHHhhcCChhhhhhcCCCCCCCHHH
Q 010356 388 LEQTAEAVGYGAAKYFDLKNN-RLTNYTFSFDQMLN-DKGNTAVYLLYAHARICSIIRKSGKDIEELKKTGSLVLDHADE 465 (512)
Q Consensus 388 ~~~~a~~~~~~airy~~L~~~-~~~~~~Fd~~~~~~-~~~~~g~ylqY~~aR~~sil~k~~~~~~~~~~~~~~~l~~~~e 465 (512)
+|+|++|||+++.. ..+|.+|+++.+.+ .+.+...-+.+..+|+.+++.+...+. ++.. .. .++.+
T Consensus 317 -------ygaD~lR~~L~~~~~~~~D~~fs~~~~~~~~n~~l~~~lgNl~~R~~~~~~~~~~~~--~p~~--~~-~~~~D 384 (648)
T PRK12267 317 -------YGLDALRYYLLREVPFGSDGDFSPEALVERINSDLANDLGNLLNRTVAMINKYFDGE--IPAP--GN-VTEFD 384 (648)
T ss_pred -------cCCcHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCc--CCCC--CC-Cchhh
Confidence 79999999999764 58999999999866 355556667778899998887754321 1110 11 13456
Q ss_pred HHHHHHHHhhHHHHHHHHHhcChHHHHHHHHHHHHHHhcchhccc
Q 010356 466 RALGLHLLHFSEVIEEALTNLLPNVVCEYLYNLSEYFTRFYSNCQ 510 (512)
Q Consensus 466 ~~L~~~l~~~~~~v~~a~~~~~p~~l~~yl~~La~~fn~fY~~~~ 510 (512)
..|+..+..+.+.+.+++++++++.+++.+++++...|.|++.++
T Consensus 385 ~~ll~~l~~~~~~v~~~~e~~~~~~al~~i~~~~~~~N~Yi~~~k 429 (648)
T PRK12267 385 EELIALAEETLKNYEELMEELQFSRALEEVWKLISRANKYIDETA 429 (648)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhCC
Confidence 789999999999999999999999999999999999999998653
No 29
>PLN02610 probable methionyl-tRNA synthetase
Probab=99.96 E-value=3.4e-27 Score=263.70 Aligned_cols=335 Identities=14% Similarity=0.132 Sum_probs=230.2
Q ss_pred CceEEEEeeCCCCCCCCcccchhhh-hHHHHHHHHHHHCCCeEEEeeccCccchHHHHHHHHHHhhCCCCCccCcccHHH
Q 010356 84 VKKAVVDFSSPNIAKEMHVGHLRST-IIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGE 162 (512)
Q Consensus 84 ~~~v~Ve~~spNp~~~lHvGH~R~~-iiGD~lar~l~~~G~~V~~~~~i~D~G~qi~~l~~~~~~~~~~~~~~~~~~i~~ 162 (512)
.++++|.-.=|+|||++||||++++ +..|++||++|..|++|.+....+++|+++..-+..
T Consensus 16 ~~~~~ITt~~pY~Ng~~HlGH~~~~~l~aDv~aRy~r~~G~~v~f~~GtDehG~~i~~~A~~------------------ 77 (801)
T PLN02610 16 KRNILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNAIYICGTDEYGTATETKALE------------------ 77 (801)
T ss_pred CCCEEEeCCCCCCCCCcccchhhhhHHHHHHHHHHHHhCCCceEecccccCCcHHHHHHHHH------------------
Confidence 3579999999999999999999975 668999999999999999999999999987533210
Q ss_pred HHHHHHHHhcccCCChHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHcCCeEeeec---cccccCchHHH
Q 010356 163 LQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKG---ESFYNPYIPGV 239 (512)
Q Consensus 163 l~~~y~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~L~I~f~~~~---es~~~~~v~~~ 239 (512)
....| +++++.+.+.|+++|++|||+||.+. +..|...++++
T Consensus 78 -----------~g~~p------------------------~e~~d~~~~~~~~~~~~l~i~~D~f~rT~~~~h~~~vq~~ 122 (801)
T PLN02610 78 -----------ENCTP------------------------KEICDKYHAIHKEVYDWFDISFDKFGRTSTPQQTEICQAI 122 (801)
T ss_pred -----------cCCCH------------------------HHHHHHHHHHHHHHHHHcCCccccCccCCCHHHHHHHHHH
Confidence 01122 56788888999999999999997542 24578899999
Q ss_pred HHHHHhCCCeeee--CceEEEEec---------C--------------C---------------CC------CeEEEecC
Q 010356 240 IDELSKQGLVEES--QGARVIFIE---------G--------------V---------------NI------PLIIVKSD 273 (512)
Q Consensus 240 ~~~L~~~g~~~~~--dGa~~~~~~---------g--------------~---------------~~------d~vl~ksD 273 (512)
+.+|.++|++|+. .|.+|..++ | + ++ ..+.+++
T Consensus 123 f~~L~~~G~Iy~~~~~~~yc~~~e~fl~d~~v~G~CP~~~C~~~~a~Gd~Ce~Cg~~~~p~eLi~p~c~~~g~~~~~~~- 201 (801)
T PLN02610 123 FKKLMENNWLSENTMQQLYCDTCQKFLADRLVEGTCPTEGCNYDSARGDQCEKCGKLLNPTELIDPKCKVCKNTPRIRD- 201 (801)
T ss_pred HHHHHHCCCEEEeeEEEeecCCCCCCcchHHhcCcCCccccCccccccchhhhccccCChhhhcCCcccCCCCcceEEE-
Confidence 9999999999974 355554321 1 0 00 0000000
Q ss_pred Cccccccc-----h-HHHHH--------H---------HH-------------hhcC--------CceEEEEe-------
Q 010356 274 GGFNYAST-----D-LAALW--------Y---------RL-------------NEEK--------AEWIIYVT------- 302 (512)
Q Consensus 274 G~~~Y~~~-----D-iA~~~--------~---------k~-------------~~~~--------~d~~iyV~------- 302 (512)
+..|+.+ | +.-++ | .+ ..|| .+++||||
T Consensus 202 -~~~~ff~Ls~~~~~L~~~~~~~~~~~~~~~n~~~~~~~~l~~gL~d~~IsR~~~WGipvP~~~~~~~v~YVWfDAl~~Y 280 (801)
T PLN02610 202 -TDHLFLELPLLKDKLVEYINETSVAGGWSQNAIQTTNAWLRDGLKPRCITRDLKWGVPVPLEKYKDKVFYVWFDAPIGY 280 (801)
T ss_pred -cceEEEEhHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHhCCCCCcceeeecCCcccCCCCCCCCcEEEEehhhHHHH
Confidence 0112110 0 00000 0 00 0010 23555554
Q ss_pred ---------------------------eCcccchHHHHH-HHHHHcCCCCCCCCCCCceEEEEeEEEECCCCcceeeecC
Q 010356 303 ---------------------------DVGQQLHFDMVF-SAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFS 354 (512)
Q Consensus 303 ---------------------------g~~q~~hf~~l~-~~~~~~g~~~~~~~~~~~~~Hv~~g~V~~~~g~kmSkR~G 354 (512)
|.|...++.-++ +++.++|... +. ++ ..+.+|+++ .+|+|||||+|
T Consensus 281 is~~~~~~~~~~~~W~~~~~~~~~hfiGKDi~~fH~i~wPa~L~a~g~~~---~~-p~-~i~~~g~l~-~eG~KMSKS~G 354 (801)
T PLN02610 281 VSITACYTPEWEKWWKNPENVELYQFMGKDNVPFHTVMFPSTLLGTGENW---TM-MK-TISVTEYLN-YEGGKFSKSKG 354 (801)
T ss_pred HHHHhhhhhHHHHhcCCcccceEEEEEeeecchhHHHHHHHHHHhCCCCc---CC-CC-EEEeccCEe-cCCceecCcCC
Confidence 444322222233 3445555310 11 12 123568877 68999999999
Q ss_pred CeecHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhchhhHHHHhhccCC-CCCccccccccccc-cCCchHHHH
Q 010356 355 EVVRLVDLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNR-LTNYTFSFDQMLND-KGNTAVYLL 432 (512)
Q Consensus 355 ~~v~l~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~airy~~L~~~~-~~~~~Fd~~~~~~~-~~~~g~ylq 432 (512)
|+|++.++++.. +|+|++|||+++..+ .+|.+|+|+.+... |.+..+-++
T Consensus 355 NvV~p~~~i~~~----------------------------yg~D~lRyyLl~~~p~~~D~dFs~~~f~~~~NsdL~n~lG 406 (801)
T PLN02610 355 VGVFGNDAKDTN----------------------------IPVEVWRYYLLTNRPEVSDTLFTWADLQAKLNSELLNNLG 406 (801)
T ss_pred cccCHHHHHhcc----------------------------CCchHhHHHhhhcCCCCCCCcCCHHHHHHHHHHHHHHHHH
Confidence 999999998842 799999999999866 79999999999884 667777778
Q ss_pred HHHHHHHHHHHh----hcCChhhhhhcCCCCCCCHHHHHHHHHHHhhHHHHHHHHHhcChHHHHHHHHHHHHHHhcchhc
Q 010356 433 YAHARICSIIRK----SGKDIEELKKTGSLVLDHADERALGLHLLHFSEVIEEALTNLLPNVVCEYLYNLSEYFTRFYSN 508 (512)
Q Consensus 433 Y~~aR~~sil~k----~~~~~~~~~~~~~~~l~~~~e~~L~~~l~~~~~~v~~a~~~~~p~~l~~yl~~La~~fn~fY~~ 508 (512)
+..+|+.+++.+ +..+. ++... ....++.+.+|+..+.+..+.+.+++++++++.+++.+++++...|.|++.
T Consensus 407 Nlv~R~~~~i~~~~~k~~~g~--vp~~~-~~~~~~~d~~Ll~~~~~~i~~v~~~me~~~~~~Al~~I~~l~~~~NkYIe~ 483 (801)
T PLN02610 407 NFINRVLSFIAKPPGAGYGSV--IPDAP-GAESHPLTKKLAEKVGKLVEQYVEAMEKVKLKQGLKTAMSISSEGNAYLQE 483 (801)
T ss_pred HHHHHHHHHHHhhhhhccCCc--CCCcc-ccccchhhHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHh
Confidence 888999999884 33222 11110 100123456799999999999999999999999999999999999999986
Q ss_pred cc
Q 010356 509 CQ 510 (512)
Q Consensus 509 ~~ 510 (512)
.+
T Consensus 484 ~k 485 (801)
T PLN02610 484 SQ 485 (801)
T ss_pred cC
Confidence 53
No 30
>cd00668 Ile_Leu_Val_MetRS_core catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. Catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. These class I enzymes are all monomers. However, in some species, MetRS functions as a homodimer, as a result of an additional C-terminal domain. These enzymes aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. Enzymes in this subfamily share an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. MetRS has a significantly shorter insertion, which lacks the editing function.
Probab=99.95 E-value=1e-26 Score=236.51 Aligned_cols=253 Identities=16% Similarity=0.135 Sum_probs=179.1
Q ss_pred eEEEEeeCCCCCCCCcccchhhhhHHHHHHHHHHHCCCeEEEeeccCccchHHHHHHHHHHhhCCCCCccCcccHHHHHH
Q 010356 86 KAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQE 165 (512)
Q Consensus 86 ~v~Ve~~spNp~~~lHvGH~R~~iiGD~lar~l~~~G~~V~~~~~i~D~G~qi~~l~~~~~~~~~~~~~~~~~~i~~l~~ 165 (512)
|.+|...-|||+|++||||+|+.++.|+++|++++.||+|.++..++|+|.++...+... +...
T Consensus 1 ~~~i~~~pP~~~g~~HiGH~~~~i~~D~i~R~~r~~G~~v~~~~g~D~~g~~i~~~a~~~----~~~~------------ 64 (312)
T cd00668 1 KFYVTTPPPYANGSLHLGHALTHIIADFIARYKRMRGYEVPFLPGWDTHGLPIELKAERK----GGRK------------ 64 (312)
T ss_pred CEEEecCCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCCCCCccCCCCHHHHHHHHHh----cCcc------------
Confidence 367888999999999999999999999999999999999999999999998876544221 0000
Q ss_pred HHHHHhcccCCChHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHcCCeEeee----c-cccccCchHHHH
Q 010356 166 FYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEK----G-ESFYNPYIPGVI 240 (512)
Q Consensus 166 ~y~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~L~I~f~~~----~-es~~~~~v~~~~ 240 (512)
....+ ..+..+.++++++.+.+.|++++++|||.+||. + +..|.+.+.+++
T Consensus 65 --------~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~l~~lgI~~Dw~~~~~T~~~~~~~~v~~~f 120 (312)
T cd00668 65 --------KKTIW----------------IEEFREDPKEFVEEMSGEHKEDFRRLGISYDWSDEYITTEPEYSKAVELIF 120 (312)
T ss_pred --------ccccc----------------HHHHHHHHHHHHHHHHHHHHHHHHHhCccccCCCCeECCCHHHHHHHHHHH
Confidence 00011 001234557789999999999999999999843 1 245678899999
Q ss_pred HHHHhCCCeee------eCceEEEEec------------C----------------CCCCeEEEecC--Cc-----cccc
Q 010356 241 DELSKQGLVEE------SQGARVIFIE------------G----------------VNIPLIIVKSD--GG-----FNYA 279 (512)
Q Consensus 241 ~~L~~~g~~~~------~dGa~~~~~~------------g----------------~~~d~vl~ksD--G~-----~~Y~ 279 (512)
++|.++|++|+ .+..++++++ + ...|..|.|.- |. .+|.
T Consensus 121 ~~L~~~G~iY~~~~~v~~~~~~f~~~~~l~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~d~~isR~~~WG~~~P~~~i~~ 200 (312)
T cd00668 121 SRLYEKGLIYRGTHPVRITEQWFFDMPKFKEKLLKALRRGKIVPEHVKNRMEAWLESLLDWAISRQRYWGTPLPEDVFDV 200 (312)
T ss_pred HHHHHCCCEEeecceeEeeeeEEEEcHHHHHHHHHHHhcCCcCChHHHHHHHHHHhCCCCeEEeccCCCCCcCCcccccc
Confidence 99999999998 4455666553 1 11255555431 22 2233
Q ss_pred cchHH--HHHH-H-------Hhh-cCCceEEEEeeCccc-chHHHHHHHHHHcCCCCCCCCCCCceEEEEeEEEECCCCc
Q 010356 280 STDLA--ALWY-R-------LNE-EKAEWIIYVTDVGQQ-LHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGK 347 (512)
Q Consensus 280 ~~DiA--~~~~-k-------~~~-~~~d~~iyV~g~~q~-~hf~~l~~~~~~~g~~~~~~~~~~~~~Hv~~g~V~~~~g~ 347 (512)
.-|-+ +... . +.. +.. -|++.|.||. .|+....+++.+++... ++. .|+.+|+|+..+|+
T Consensus 201 Wfds~~~~~~~~~~~~~~~~~~~~~~~--di~~~G~D~~~~h~~~~~~~~~~~~~~~---~~~---~~~~~g~~~~~~g~ 272 (312)
T cd00668 201 WFDSGIGPLGSLGYPEEKEWFKDSYPA--DWHLIGKDILRGWANFWITMLVALFGEI---PPK---NLLVHGFVLDEGGQ 272 (312)
T ss_pred hhhccHHHHHHcCCCccchhhhhcCCc--eEEEEecchhhhHHHHHHHHHHHhcCCC---Ccc---eeEECcEEEcCCCc
Confidence 22211 1110 0 000 122 4889999997 78888877777777531 222 34456889987779
Q ss_pred ceeeecCCeecHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhchhhHHHHhhccCC-CCCccc
Q 010356 348 RLRTRFSEVVRLVDLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNR-LTNYTF 415 (512)
Q Consensus 348 kmSkR~G~~v~l~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~airy~~L~~~~-~~~~~F 415 (512)
|||||+||+|+++|++++ +|++|+||++++..+ .+|.+|
T Consensus 273 KmSKS~gn~v~~~d~~~~-----------------------------~~~da~R~~l~~~~~~~~d~~~ 312 (312)
T cd00668 273 KMSKSKGNVIDPSDVVEK-----------------------------YGADALRYYLTSLAPYGDDIRL 312 (312)
T ss_pred cccccCCCcCCHHHHHHH-----------------------------cCcHHHHHHHHhcCCccCCCCC
Confidence 999999999999999998 799999999998874 666655
No 31
>cd00672 CysRS_core catalytic core domain of cysteinyl tRNA synthetase. Cysteinyl tRNA synthetase (CysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=99.94 E-value=1.2e-26 Score=221.80 Aligned_cols=192 Identities=17% Similarity=0.186 Sum_probs=148.1
Q ss_pred CCceEEEEeeCCCCCCCCcccchhhhhHHHHHHHHHHHCCCeEEEeeccCccchHHHHHHHHHHhhCCCCCccCcccHHH
Q 010356 83 RVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGE 162 (512)
Q Consensus 83 ~~~~v~Ve~~spNp~~~lHvGH~R~~iiGD~lar~l~~~G~~V~~~~~i~D~G~qi~~l~~~~~~~~~~~~~~~~~~i~~ 162 (512)
.++++.++-|+|+|++++||||+|++++.|+++|++|..|++|.++.+++|+|.++..-+
T Consensus 17 ~~~~~~~y~~gpt~y~~~HiGH~r~~v~~Dvl~R~lr~~G~~V~~~~g~dd~g~ki~~~A-------------------- 76 (213)
T cd00672 17 NPGLVTMYVCGPTVYDYAHIGHARTYVVFDVLRRYLEDLGYKVRYVQNITDIDDKIIKRA-------------------- 76 (213)
T ss_pred CCCCceEEEeCCccCCCcccccchhHHHHHHHHHHHHhcCCeeEEEeecCCCCCHHHHHH--------------------
Confidence 457789999999999999999999999999999999999999999999999887664222
Q ss_pred HHHHHHHHhcccCCChHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHcCCeE-eeeccccccCchHHHHH
Q 010356 163 LQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDL-EEKGESFYNPYIPGVID 241 (512)
Q Consensus 163 l~~~y~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~L~I~f-~~~~es~~~~~v~~~~~ 241 (512)
.+. ..+ |+++++.+.+.|++++++|||++ +.++.+
T Consensus 77 --------~~~-g~~------------------------p~e~~~~~~~~f~~~~~~l~i~~~d~~~rt----------- 112 (213)
T cd00672 77 --------REE-GLS------------------------WKEVADYYTKEFFEDMKALNVLPPDVVPRV----------- 112 (213)
T ss_pred --------HHc-CCC------------------------HHHHHHHHHHHHHHHHHHcCCCCCCcceee-----------
Confidence 111 111 35778889999999999999998 655443
Q ss_pred HHHhCCCeeeeCceEEEEecCCCCCeEEEecCCccccccchHHHHHHHHhhcCCceEEEEeeCcccchHHHHH---HHHH
Q 010356 242 ELSKQGLVEESQGARVIFIEGVNIPLIIVKSDGGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVF---SAAK 318 (512)
Q Consensus 242 ~L~~~g~~~~~dGa~~~~~~g~~~d~vl~ksDG~~~Y~~~DiA~~~~k~~~~~~d~~iyV~g~~q~~hf~~l~---~~~~ 318 (512)
|... +++...+. .+ ..++|++++.+..|+++. ....
T Consensus 113 ------------------------------------Wh~e-c~am~~~~--lg--~~~dih~~G~Dl~fpH~~~~~a~~~ 151 (213)
T cd00672 113 ------------------------------------WHIE-CSAMAMKY--LG--ETFDIHGGGVDLIFPHHENEIAQSE 151 (213)
T ss_pred ------------------------------------hhHH-HHHHHHHH--cC--CCccEEeecCCCCcChHHHHHHHHH
Confidence 3333 22222232 22 335677777777666542 2223
Q ss_pred H-cCCCCCCCCCCCceEEEEeEEEECCCCcceeeecCCeecHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhch
Q 010356 319 R-AGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGY 397 (512)
Q Consensus 319 ~-~g~~~~~~~~~~~~~Hv~~g~V~~~~g~kmSkR~G~~v~l~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 397 (512)
+ .|. +++..|.|. |+|. .+|+|||||+||+|+++|++++ +|+
T Consensus 152 a~~g~-----~~~~~~~h~--~~v~-~~g~KMSKs~Gn~v~~~dll~~-----------------------------~~~ 194 (213)
T cd00672 152 AATGK-----PFARYWLHT--GHLT-IDGEKMSKSLGNFITVRDALKK-----------------------------YDP 194 (213)
T ss_pred HHhCC-----CCCcEEEEE--EEEe-ccCcchhhcCCCccCHHHHHHH-----------------------------cCH
Confidence 3 343 467889998 7787 6788999999999999999998 799
Q ss_pred hhHHHHhhccCCCCCcccc
Q 010356 398 GAAKYFDLKNNRLTNYTFS 416 (512)
Q Consensus 398 ~airy~~L~~~~~~~~~Fd 416 (512)
+++||++|+.+++++++||
T Consensus 195 da~R~~~l~~~~~~~l~f~ 213 (213)
T cd00672 195 EVLRLALLSSHYRSPLDFS 213 (213)
T ss_pred HHHHHHHHhCCcCCCCCCC
Confidence 9999999999999999996
No 32
>cd00812 LeuRS_core catalytic core domain of leucyl-tRNA synthetases. Leucyl tRNA synthetase (LeuRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. In Aquifex aeolicus, the gene encoding LeuRS is split in two, just before the KMSKS motif. Consequently, LeuRS is a heterodimer, which likely superimposes with the LeuRS monomer found in most other organisms. LeuRS has an insertion in the core domain, which is subject to both deletions and rearrangements and thus differs between prokaryotic LeuRS and archaeal/eukaryotic LeuRS. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=99.94 E-value=1.8e-26 Score=234.42 Aligned_cols=242 Identities=18% Similarity=0.170 Sum_probs=170.5
Q ss_pred eEEEEeeCCCCCCCCcccchhhhhHHHHHHHHHHHCCCeEEEeeccCccchHHHHHHHHHHhhCCCCCccCcccHHHHHH
Q 010356 86 KAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQE 165 (512)
Q Consensus 86 ~v~Ve~~spNp~~~lHvGH~R~~iiGD~lar~l~~~G~~V~~~~~i~D~G~qi~~l~~~~~~~~~~~~~~~~~~i~~l~~ 165 (512)
|++|...-|+|+|++||||+|+.+++|+++|+++..|++|.++.+++|+|.++...+..
T Consensus 1 k~~it~~~Py~ng~~HiGH~~~~v~~Dv~~R~lr~~G~~V~~v~g~Dd~g~~i~~~a~~--------------------- 59 (314)
T cd00812 1 KFYILVMFPYPSGALHVGHVRTYTIGDIIARYKRMQGYNVLFPMGFDAFGLPAENAAIK--------------------- 59 (314)
T ss_pred CeEEecCCCCCCCCccccchHHHHHHHHHHHHHHHcCCCcCCCCCcCCCCCHHHHHHHH---------------------
Confidence 46788999999999999999999999999999999999999999999998776432211
Q ss_pred HHHHHhcccCCChHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHcCCeEeeec-----cccccCchHHHH
Q 010356 166 FYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKG-----ESFYNPYIPGVI 240 (512)
Q Consensus 166 ~y~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~L~I~f~~~~-----es~~~~~v~~~~ 240 (512)
...+ ++++++.+.+.|++++++|||.+|+.. ...|.+.+++++
T Consensus 60 --------~g~~------------------------~~e~~~~~~~~~~~~~~~lgi~~d~~~~~~t~~~~~~~~v~~~f 107 (314)
T cd00812 60 --------IGRD------------------------PEDWTEYNIKKMKEQLKRMGFSYDWRREFTTCDPEYYKFTQWLF 107 (314)
T ss_pred --------cCCC------------------------HHHHHHHHHHHHHHHHHHhccceecccccccCCHHHHHHHHHHH
Confidence 0011 246788889999999999999998532 234567788899
Q ss_pred HHHHhCCCeeeeCceEEEE---------e--cC---------CCCCe-------------EEEec--CCccc------cc
Q 010356 241 DELSKQGLVEESQGARVIF---------I--EG---------VNIPL-------------IIVKS--DGGFN------YA 279 (512)
Q Consensus 241 ~~L~~~g~~~~~dGa~~~~---------~--~g---------~~~d~-------------vl~ks--DG~~~------Y~ 279 (512)
..|.++|++|+.++.+++. + +. ...+. -+.|. =|.|. |.
T Consensus 108 ~~L~~~G~iy~~~~~v~~~~~~~~~f~~l~~~~~~~~l~~~l~~~~~~p~~~~~~~~~~l~isR~~~wGipvP~~~~i~~ 187 (314)
T cd00812 108 LKLYEKGLAYKKEAPVNWCKLLDQWFLKYSETEWKEKLLKDLEKLDGWPEEVRAMQENWIGCSRQRYWGTPIPWTDTMES 187 (314)
T ss_pred HHHHHCCCEEecCceeeeeCccceEEEEcCcHHHHHHHHHHHHhcCcCCHHHHHHHHHHheeeeecCCcCCcCccccccc
Confidence 9999999999887766553 2 10 00000 01111 13221 22
Q ss_pred cchHH-----HH----------------HHHHhhc-CCceEEEEeeCccc----chHHHHHHHHHHcCCCCCCCCCCCce
Q 010356 280 STDLA-----AL----------------WYRLNEE-KAEWIIYVTDVGQQ----LHFDMVFSAAKRAGWLSADDSTYPKA 333 (512)
Q Consensus 280 ~~DiA-----~~----------------~~k~~~~-~~d~~iyV~g~~q~----~hf~~l~~~~~~~g~~~~~~~~~~~~ 333 (512)
..|-. |. ...+..+ +.| |+|+|.||. .|+....+++..+|+.. ..++..+
T Consensus 188 w~ds~~y~~~y~~~~~~~~~~~~~~~~~~~~~~~w~p~d--i~v~G~D~i~~h~~~~~~~~~~l~~~g~~~--~~~~~~~ 263 (314)
T cd00812 188 LSDSTWYYARYTDAHNLEQPYEGDLEFDREEFEYWYPVD--IYIGGKEHAPNHLLYSRFNHKALFDEGLVT--DEPPKGL 263 (314)
T ss_pred ccccHHHHHHHHhcccccCcchhhhhhhHHHHHHhCCCe--eeecchhHHHHHHHHHHHHHHHHcCccccc--ccCcHHh
Confidence 22211 11 0011122 334 899999983 33345557777777510 0123344
Q ss_pred EEEEeEEEECCCCcceeeecCCeecHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhchhhHHHHhhccCCCCCc
Q 010356 334 SHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNRLTNY 413 (512)
Q Consensus 334 ~Hv~~g~V~~~~g~kmSkR~G~~v~l~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~airy~~L~~~~~~~~ 413 (512)
. .+|+|+. +|+|||||+||+|+++|++++ +|+||+||++++..+ +++
T Consensus 264 ~--~~g~v~~-~g~KmSkS~Gn~v~~~dll~~-----------------------------~~~Da~R~~ll~~~~-~~~ 310 (314)
T cd00812 264 I--VQGMVLL-EGEKMSKSKGNVVTPDEAIKK-----------------------------YGADAARLYILFAAP-PDA 310 (314)
T ss_pred e--ecceEec-CccccCCcCCCCCCHHHHHHH-----------------------------hCcHHHHHHHHhcCC-cCC
Confidence 4 4688985 789999999999999999998 699999999999988 999
Q ss_pred cccc
Q 010356 414 TFSF 417 (512)
Q Consensus 414 ~Fd~ 417 (512)
+|||
T Consensus 311 ~f~~ 314 (314)
T cd00812 311 DFDW 314 (314)
T ss_pred CCCC
Confidence 9997
No 33
>cd00814 MetRS_core catalytic core domain of methioninyl-tRNA synthetases. Methionine tRNA synthetase (MetRS) catalytic core domain. This class I enzyme aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. MetRS, which consists of the core domain and an anti-codon binding domain, functions as a monomer. However, in some species the anti-codon binding domain is followed by an EMAP domain. In this case, MetRS functions as a homodimer. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. As a result of a deletion event, MetRS has a significantly shorter core domain insertion than IleRS, ValRS, and LeuR. Consequently, the MetRS insertion lacks the editing function.
Probab=99.94 E-value=7.3e-26 Score=230.69 Aligned_cols=240 Identities=18% Similarity=0.248 Sum_probs=167.9
Q ss_pred eEEEEeeCCCCCCCCcccchhhhhHHHHHHHHHHHCCCeEEEeeccCccchHHHHHHHHHHhhCCCCCccCcccHHHHHH
Q 010356 86 KAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQE 165 (512)
Q Consensus 86 ~v~Ve~~spNp~~~lHvGH~R~~iiGD~lar~l~~~G~~V~~~~~i~D~G~qi~~l~~~~~~~~~~~~~~~~~~i~~l~~ 165 (512)
+++|--+-|+|||++||||+|+.++.|+++|++|+.|++|..+.+++|+|.++..-+
T Consensus 1 ~~~it~~~Py~ng~~HlGH~~~~~~~Dv~~R~~r~~G~~V~~~~g~Dd~g~~i~~~a----------------------- 57 (319)
T cd00814 1 KVLITTALPYVNGVPHLGHLYGTVLADVFARYQRLRGYDVLFVTGTDEHGTKIEQKA----------------------- 57 (319)
T ss_pred CEEEEeCCCCCCCCcchhhHHHHHHHHHHHHHHHhCCCcccccCccCCCCcHHHHHH-----------------------
Confidence 467888999999999999999999999999999999999999999999887664322
Q ss_pred HHHHHhcccCCChHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHcCCeEeee---ccccccCchHHHHHH
Q 010356 166 FYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEK---GESFYNPYIPGVIDE 242 (512)
Q Consensus 166 ~y~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~L~I~f~~~---~es~~~~~v~~~~~~ 242 (512)
.+. +.+ ++++++.+.+.|+++|++|||.||.+ +++.|.+.+.+++++
T Consensus 58 -----~~~-g~~------------------------~~e~~~~~~~~~~~~l~~LgI~~D~~~~tt~~~~~~~v~~i~~~ 107 (319)
T cd00814 58 -----EEE-GVT------------------------PQELCDKYHEIFKDLFKWLNISFDYFIRTTSPRHKEIVQEFFKK 107 (319)
T ss_pred -----HHc-CCC------------------------HHHHHHHHHHHHHHHHHHcCCcCCCCeeCCCHHHHHHHHHHHHH
Confidence 110 111 24678999999999999999999743 234577889999999
Q ss_pred HHhCCCeeeeC--ce-----------------EEEEec------------CC-------------------CCCeEEEec
Q 010356 243 LSKQGLVEESQ--GA-----------------RVIFIE------------GV-------------------NIPLIIVKS 272 (512)
Q Consensus 243 L~~~g~~~~~d--Ga-----------------~~~~~~------------g~-------------------~~d~vl~ks 272 (512)
|.++|++|+.+ |. ++|+++ +. -.|.-+.|.
T Consensus 108 L~ekG~iY~~~~~~~yc~~~~~~l~e~~~~~~~ff~l~~~~~~l~~~~~~~~~~~~p~~~~~~~~~~l~~~l~d~~isR~ 187 (319)
T cd00814 108 LYENGYIYEGEYEGLYCVSCERFLPEWREEEHYFFRLSKFQDRLLEWLEKNPDFIWPENARNEVLSWLKEGLKDLSITRD 187 (319)
T ss_pred HHHCCCEEeeeeeeeECCCCCcEeeEEEeeeeEEEEhHHHHHHHHHHHHhCCccCCCHHHHHHHHHHHhCCCcccCCCcc
Confidence 99999999754 33 334432 00 011112121
Q ss_pred -----------CCccccccchH--HHHH------HHH-----hhcCCceEEEEeeCcccchHHHHH-HHHHHcCCCCCCC
Q 010356 273 -----------DGGFNYASTDL--AALW------YRL-----NEEKAEWIIYVTDVGQQLHFDMVF-SAAKRAGWLSADD 327 (512)
Q Consensus 273 -----------DG~~~Y~~~Di--A~~~------~k~-----~~~~~d~~iyV~g~~q~~hf~~l~-~~~~~~g~~~~~~ 327 (512)
.|...|..-|- +|.- ++. -.......+++.|.|+..++...+ +++.++|+.
T Consensus 188 ~~~WGipvp~~~~~~~yvWfda~~~y~~~~~~~~~~~~~~~~~~~~~~~~v~~~G~D~~~fh~~~~pa~l~~~~~~---- 263 (319)
T cd00814 188 LFDWGIPVPLDPGKVIYVWFDALIGYISATGYYNEEWGNSWWWKDGWPELVHFIGKDIIRFHAIYWPAMLLGAGLP---- 263 (319)
T ss_pred CcccCeeCCCCCCcEEEEehhhHHHHHHHcccccccccchhhhhcCCCceEEEEeechhhhhHHHHHHHHHhCCCC----
Confidence 12334544442 1110 000 001123468888998876544444 456677763
Q ss_pred CCCCceEEEEeEEEECCCCcceeeecCCeecHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhchhhHHHHhhcc
Q 010356 328 STYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKN 407 (512)
Q Consensus 328 ~~~~~~~Hv~~g~V~~~~g~kmSkR~G~~v~l~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~airy~~L~~ 407 (512)
+...+. .+|+++. +|+|||||+||+|++.|++++ +|+|++||++++.
T Consensus 264 -~~~~~~--~~~~~~~-~g~kmSkS~gn~i~~~~~l~~-----------------------------~~~d~~R~~l~~~ 310 (319)
T cd00814 264 -LPTRIV--AHGYLTV-EGKKMSKSRGNVVDPDDLLER-----------------------------YGADALRYYLLRE 310 (319)
T ss_pred -CCcEee--eeeeEEE-CCeeecccCCcccCHHHHHHH-----------------------------cCchHHHHHHHhc
Confidence 234443 3588885 599999999999999999998 7999999999998
Q ss_pred CC-CCCccc
Q 010356 408 NR-LTNYTF 415 (512)
Q Consensus 408 ~~-~~~~~F 415 (512)
.+ .++.+|
T Consensus 311 ~~~~~d~~f 319 (319)
T cd00814 311 RPEGKDSDF 319 (319)
T ss_pred CCCCCCCCC
Confidence 76 566655
No 34
>cd00674 LysRS_core_class_I catalytic core domain of class I lysyl tRNA synthetase. Class I lysyl tRNA synthetase (LysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The class I LysRS is found only in archaea and some bacteria and has evolved separately from class II LysRS, as the two do not share structural or sequence similarity.
Probab=99.93 E-value=7.4e-25 Score=223.02 Aligned_cols=258 Identities=19% Similarity=0.262 Sum_probs=173.5
Q ss_pred ceEEEEeeCCCCCCCCcccchhhhhHHHHHHHHHHHCCCeEEEeeccCccchHHHHHHHHHHhhCCC-CCccCcccHHHH
Q 010356 85 KKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPN-SEDANETAIGEL 163 (512)
Q Consensus 85 ~~v~Ve~~spNp~~~lHvGH~R~~iiGD~lar~l~~~G~~V~~~~~i~D~G~qi~~l~~~~~~~~~~-~~~~~~~~i~~l 163 (512)
.+++| -|++.|+|++||||+|..+.+|+++|.||.+|++|.+++..+|+|. +..+-.. .|+ .+.+.|.++..+
T Consensus 19 ~~~~v-~tgi~psG~~HIG~~~e~i~~D~i~R~lr~~G~~v~~v~~~Dd~d~-lrKvp~~----l~~~~~~~~G~pi~~i 92 (353)
T cd00674 19 EKYVV-ASGISPSGHIHIGNFREVITADLVARALRDLGFEVRLIYSWDDYDR-LRKVPPN----VPESYEQYIGMPLSSV 92 (353)
T ss_pred CeEEE-ecCCCCCCCcccCccHHHHHHHHHHHHHHHcCCCEEEEEEEcCCCc-ccccccc----hhhHHHHhcCccchhc
Confidence 45777 5667799999999999999999999999999999999999999865 2111000 000 000112222211
Q ss_pred HHHHHHHhcccCCChHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHcCCeEeeecc-ccc-cC-chHHHH
Q 010356 164 QEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKGE-SFY-NP-YIPGVI 240 (512)
Q Consensus 164 ~~~y~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~L~I~f~~~~e-s~~-~~-~v~~~~ 240 (512)
. +| .|- ...+++.+...|++.+++|||++++.+. ..| ++ ..+.+.
T Consensus 93 p------------~p--------------~g~------~~~~~d~~~~~f~~~l~~lgi~~d~~~~T~~y~~g~~~~~i~ 140 (353)
T cd00674 93 P------------DP--------------FGC------CESYAEHFERPFEESLEKLGIEVEFISQSQMYKSGLYDENIL 140 (353)
T ss_pred h------------hh--------------cCC------CHHHHHHHHHHHHHHHHHcCCeeeeeecCCchhhchHHHHHH
Confidence 0 11 011 1256889999999999999999986543 334 33 456677
Q ss_pred HHHHhCCCeee---------eCceEEEEe---c--CCCCCeEEEecC---Cccccccc-------hHH----HHHHHHh-
Q 010356 241 DELSKQGLVEE---------SQGARVIFI---E--GVNIPLIIVKSD---GGFNYAST-------DLA----ALWYRLN- 291 (512)
Q Consensus 241 ~~L~~~g~~~~---------~dGa~~~~~---~--g~~~d~vl~ksD---G~~~Y~~~-------DiA----~~~~k~~- 291 (512)
..|.+++.+.+ ....++-.. + |... ..+..-| |+.+|.+. |+- =.-||++
T Consensus 141 ~~L~~~~~I~~i~~~~~~~~~~~~~~P~~p~c~~cg~~~-~~v~~~d~~~~~v~y~c~cG~~g~~~~~~g~~KL~Wr~dW 219 (353)
T cd00674 141 IALEKRDEIMAILNEYRGRELQETWYPFMPYCEKCGKDT-TTVEAYDAKAGTVTYKCECGHEETVDIRTGRGKLTWRVDW 219 (353)
T ss_pred HHHHHCChHHHHHHHhcCCccCCCceeeeeecCCcCcce-eEEEEEeCCCCeEEEEcCCCCEEEEeecCCCcccCCCCCc
Confidence 77888886652 112222111 1 4221 2222222 45667642 121 0123321
Q ss_pred -----hcCCceEEEEeeCcccch---HHHHHHHHH-HcCCCCCCCCCCCceEEEEeEEEECCCCcceeeecCCeecHHHH
Q 010356 292 -----EEKAEWIIYVTDVGQQLH---FDMVFSAAK-RAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDL 362 (512)
Q Consensus 292 -----~~~~d~~iyV~g~~q~~h---f~~l~~~~~-~~g~~~~~~~~~~~~~Hv~~g~V~~~~g~kmSkR~G~~v~l~dl 362 (512)
-.+.| +=++|.||..+ |+++..+++ .+|+.+ + .|+.||||+..+|+|||||+||+|+++|+
T Consensus 220 ~~rW~~l~Vd--~E~~GkDh~~~ggs~~~~~~i~~~ilg~~~------P--~~~~ye~V~l~gg~KMSKSkGnvI~~~dl 289 (353)
T cd00674 220 PMRWAILGVD--FEPFGKDHASAGGSYDTGKEIAREIFGGEP------P--VPVMYEFIGLKGGGKMSSSKGNVITPSDW 289 (353)
T ss_pred hhhhhhcCCC--EEeeCccccccccHHHHHHHHHHHHhCCCC------C--eEEEeeeEEeCCCCccCCCCCCcCCHHHH
Confidence 12233 45799999999 999999998 999852 2 56789999977777999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhchhhHHHHhhccC-CCCCcccccccc
Q 010356 363 LDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNN-RLTNYTFSFDQM 420 (512)
Q Consensus 363 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~airy~~L~~~-~~~~~~Fd~~~~ 420 (512)
|++ ++++++||++++.. +.+++.||++..
T Consensus 290 l~~-----------------------------~~~dalR~~~l~~~~~~~~i~Fd~~~~ 319 (353)
T cd00674 290 LEV-----------------------------APPEVLRYLYARRKNPEKHIGFDLDIL 319 (353)
T ss_pred HHH-----------------------------hChHHHHHHHHhCCCCCCCCCcChhHH
Confidence 998 68999999999988 789999998643
No 35
>cd00818 IleRS_core catalytic core domain of isoleucyl-tRNA synthetases. Isoleucine amino-acyl tRNA synthetases (IleRS) catalytic core domain . This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. IleRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=99.93 E-value=1.5e-24 Score=222.27 Aligned_cols=256 Identities=16% Similarity=0.146 Sum_probs=169.5
Q ss_pred eEEEEeeCCCCCCCCcccchhhhhHHHHHHHHHHHCCCeEEEeeccCccchHHHHHHHHHHhhCCCCCccCcccHHHHHH
Q 010356 86 KAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQE 165 (512)
Q Consensus 86 ~v~Ve~~spNp~~~lHvGH~R~~iiGD~lar~l~~~G~~V~~~~~i~D~G~qi~~l~~~~~~~~~~~~~~~~~~i~~l~~ 165 (512)
+..|--.-|||+|++||||+|+.++.|+++|+++++||+|..+.+++|+|.++...+... .+-.. ...+.+
T Consensus 2 ~f~i~~~pP~vnG~lHiGHa~~~~~~Dvl~Ry~r~~G~~V~~~~g~D~hG~~ie~ka~k~---lg~~~---~~~~~~--- 72 (338)
T cd00818 2 EFVFHDGPPYANGLPHYGHALNKILKDIINRYKTMQGYYVPRRPGWDCHGLPIELKVEKE---LGISG---KKDIEK--- 72 (338)
T ss_pred CeEEecCCCCCCCCchHHHHHHHHHHHHHHHHHHhcCCccCCcCCcCCCCchhHHHHHHH---hCCCC---Ccchhh---
Confidence 456767889999999999999999999999999999999999999999999887543211 11000 000000
Q ss_pred HHHHHhcccCCChHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHcCCeEeee-----ccccccCchHHHH
Q 010356 166 FYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEK-----GESFYNPYIPGVI 240 (512)
Q Consensus 166 ~y~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~L~I~f~~~-----~es~~~~~v~~~~ 240 (512)
.. ..+..+.++++++.+.+.|.+++++|||.++|. .++.|.+.+.+++
T Consensus 73 ----------~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~lgi~~~~~~~~~T~~~~~~~~v~~~f 125 (338)
T cd00818 73 ----------MG-----------------IAEFNAKCREFALRYVDEQEEQFQRLGVWVDWENPYKTMDPEYMESVWWVF 125 (338)
T ss_pred ----------cC-----------------HHHHHHHHHHHHHHHHHHHHHHHHHhCceecCCCCeECCCHHHHHHHHHHH
Confidence 00 112234567889999999999999999977532 2457788899999
Q ss_pred HHHHhCCCeeeeCceEEEEec-----------------------C-----------------CCCCeE------------
Q 010356 241 DELSKQGLVEESQGARVIFIE-----------------------G-----------------VNIPLI------------ 268 (512)
Q Consensus 241 ~~L~~~g~~~~~dGa~~~~~~-----------------------g-----------------~~~d~v------------ 268 (512)
++|.++|++|+.++.+++.+. . .-.|..
T Consensus 126 ~~L~~~G~iY~~~~~v~~~v~~~~~~qwf~~l~~~~~~l~~~~~~~~~~P~~~~~~~~~~l~~l~dw~iSR~~~WGip~P 205 (338)
T cd00818 126 KQLHEKGLLYRGYKVVPWPLIYRATPQWFIRVTKIKDRLLEANDKVNWIPEWVKNRFGNWLENRRDWCISRQRYWGTPIP 205 (338)
T ss_pred HHHHHCCCEeccCCeeeeEEEEEecCeEEEEcHHHHHHHHHHHhcCcEECHHHHHHHHHHHhcchhcceeeecccCceee
Confidence 999999999987776554321 0 001111
Q ss_pred EE--ecC--------CccccccchH--HHHH---H-----HHhh-cCCceEEEEeeCcccc-hHHHHH-HHHHHcCCCCC
Q 010356 269 IV--KSD--------GGFNYASTDL--AALW---Y-----RLNE-EKAEWIIYVTDVGQQL-HFDMVF-SAAKRAGWLSA 325 (512)
Q Consensus 269 l~--ksD--------G~~~Y~~~Di--A~~~---~-----k~~~-~~~d~~iyV~g~~q~~-hf~~l~-~~~~~~g~~~~ 325 (512)
++ .++ ....|.--|- .+.. + .++. +..| +.+.|.|+.. +|..+. .++...|..
T Consensus 206 ~~~~~~~~~~~~~~~~~v~~vWfda~~~~~~~~~~~~~~~~~~~~~p~d--~~~~GkDii~~wf~~~~~~~~~~~~~~-- 281 (338)
T cd00818 206 VWYCEDCGEVLVRRVPDVLDVWFDSGSMPYAQLHYPFENEDFEELFPAD--FILEGSDQTRGWFYSLLLLSTALFGKA-- 281 (338)
T ss_pred EEEecCCCeEEEecCCceEEEEEeCCCCHHHHcCCCCcchhhhccCCCe--EEeecchHHhHHHHHHHHHHHHhcCCC--
Confidence 11 112 1123332221 1111 1 1111 2333 4577988864 555543 333334442
Q ss_pred CCCCCCceEEEEeEEEECCCCcceeeecCCeecHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhchhhHHHHhh
Q 010356 326 DDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDL 405 (512)
Q Consensus 326 ~~~~~~~~~Hv~~g~V~~~~g~kmSkR~G~~v~l~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~airy~~L 405 (512)
++..-+ .+|++++.+|+|||||+||+|+++|++++ +|+|++||+++
T Consensus 282 --p~~~~~---~hg~~~~~~g~KmSKS~gn~i~~~~~~~~-----------------------------~~~D~~R~~l~ 327 (338)
T cd00818 282 --PYKNVI---VHGFVLDEDGRKMSKSLGNYVDPQEVVDK-----------------------------YGADALRLWVA 327 (338)
T ss_pred --ccceEE---EEeeEECCCCCCCCCCCCCcCCHHHHHHH-----------------------------cCcHHHHHHHH
Confidence 233333 35788877899999999999999999998 79999999999
Q ss_pred ccCC-CCCccc
Q 010356 406 KNNR-LTNYTF 415 (512)
Q Consensus 406 ~~~~-~~~~~F 415 (512)
+..+ .+|+.|
T Consensus 328 ~~~~~~~d~~~ 338 (338)
T cd00818 328 SSDVYAEDLRF 338 (338)
T ss_pred hCCCccCCCCC
Confidence 8874 677655
No 36
>cd00817 ValRS_core catalytic core domain of valyl-tRNA synthetases. Valine amino-acyl tRNA synthetase (ValRS) catalytic core domain. This enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. ValRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=99.92 E-value=4e-24 Score=222.75 Aligned_cols=133 Identities=19% Similarity=0.209 Sum_probs=101.8
Q ss_pred eEEEEeeCCCCCCCCcccchhhhhHHHHHHHHHHHCCCeEEEeeccCccchHHHHHHHHHHhhCCCCCccCcccHHHHHH
Q 010356 86 KAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQE 165 (512)
Q Consensus 86 ~v~Ve~~spNp~~~lHvGH~R~~iiGD~lar~l~~~G~~V~~~~~i~D~G~qi~~l~~~~~~~~~~~~~~~~~~i~~l~~ 165 (512)
+.+|...-|||||++||||+|+.+++|+++|++|+.|++|.+....+|+|.++...+.... +. .+..+.
T Consensus 2 ~f~i~~~pPy~nG~lHiGH~~~~~~~Dv~~Ry~r~~G~~V~~~~G~D~hG~pie~~a~k~~---~~----~~~~~~---- 70 (382)
T cd00817 2 VFVIDTPPPNVTGSLHMGHALNNTIQDIIARYKRMKGYNVLWPPGTDHAGIATQVVVEKKL---GI----EGKTRH---- 70 (382)
T ss_pred cEEEecCCCCCCCcchHHHHHHHHHHHHHHHHHHhcCCcccccCccCCCCChHHHHHHHHh---cc----cccchh----
Confidence 5778899999999999999999999999999999999999999999999999875542210 00 000000
Q ss_pred HHHHHhcccCCChHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHcCCeEeee-----ccccccCchHHHH
Q 010356 166 FYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEK-----GESFYNPYIPGVI 240 (512)
Q Consensus 166 ~y~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~L~I~f~~~-----~es~~~~~v~~~~ 240 (512)
+.++ .+.++.++++++.+.+.+++++++|||.+||. .+..|.+.+++++
T Consensus 71 ---------~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~lgi~~Dw~~~~~T~~~~~~~~v~~~f 124 (382)
T cd00817 71 ---------DLGR-----------------EEFLEKCWEWKEESGGKIREQLKRLGASVDWSREYFTMDPGLSRAVQEAF 124 (382)
T ss_pred ---------cCCH-----------------HHHHHHHHHHHHHHHHHHHHHHHHhCceeecCCCcCCCCHHHHHHHHHHH
Confidence 0111 12234557789999999999999999999852 2345677899999
Q ss_pred HHHHhCCCeeeeCce
Q 010356 241 DELSKQGLVEESQGA 255 (512)
Q Consensus 241 ~~L~~~g~~~~~dGa 255 (512)
.+|.++|++|+....
T Consensus 125 ~~L~~~G~iy~~~~~ 139 (382)
T cd00817 125 VRLYEKGLIYRDNRL 139 (382)
T ss_pred HHHHHCCCEEeeeeE
Confidence 999999999975543
No 37
>PRK13208 valS valyl-tRNA synthetase; Reviewed
Probab=99.92 E-value=4.2e-23 Score=234.04 Aligned_cols=155 Identities=17% Similarity=0.221 Sum_probs=110.5
Q ss_pred eCHHHHHHHHHHHHHcCCCCCCC-cCCCceEEEEeeCCCCCCCCcccchhhhhHHHHHHHHHHHCCCeEEEeeccCccch
Q 010356 58 LSKNWMAKNIQKMLVDGIETWAP-KLRVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGT 136 (512)
Q Consensus 58 l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~Ve~~spNp~~~lHvGH~R~~iiGD~lar~l~~~G~~V~~~~~i~D~G~ 136 (512)
.++..+.+...+...+....... ....++.+|...-|||||++||||+++.+++|+++|++|+.||+|.+....+.+|.
T Consensus 10 ~~~~~~E~~~~~~W~~~~~f~~~~~~~~~~f~i~~ppPy~nG~lHiGH~~~~~~~D~~~R~~r~~G~~v~~~~G~D~~Gl 89 (800)
T PRK13208 10 YDPEELEEKWQKIWEEEGTYKFDPDERKPVYSIDTPPPTVSGSLHIGHVFSYTHTDFIARYQRMRGYNVFFPQGWDDNGL 89 (800)
T ss_pred CCHHHHHHHHHHHHHHCCCcccccccCCCcEEEecCcCCCCCCccHHHHHhHHHHHHHHHHHHcCCCcccCCCCcCCCcc
Confidence 34444555555444433321111 12246789989999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhCCCCCccCcccHHHHHHHHHHHhcccCCChHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHH
Q 010356 137 QFGMLIEYLFEKFPNSEDANETAIGELQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKV 216 (512)
Q Consensus 137 qi~~l~~~~~~~~~~~~~~~~~~i~~l~~~y~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~ 216 (512)
++...+... .+- ....+ |..+..+..+++++.+.+.+++.
T Consensus 90 pie~~~ek~---~g~----~~~~~---------------------------------~~~~f~~~~~~~~~~~~~~~~~~ 129 (800)
T PRK13208 90 PTERKVEKY---YGI----RKDDI---------------------------------SREEFIELCRELTDEDEKKFREL 129 (800)
T ss_pred hHHHHHHHH---hCC----CcccC---------------------------------CHHHHHHHHHHHHHHHHHHHHHH
Confidence 987544221 110 00000 00112234456788899999999
Q ss_pred HHHcCCeEeeec-----cccccCchHHHHHHHHhCCCeeee
Q 010356 217 YKRLRVDLEEKG-----ESFYNPYIPGVIDELSKQGLVEES 252 (512)
Q Consensus 217 ~~~L~I~f~~~~-----es~~~~~v~~~~~~L~~~g~~~~~ 252 (512)
+++||+.+||.. +..|...++.++.+|.++|++|+.
T Consensus 130 ~~~lg~s~Dw~~~~~T~d~~~~~~v~~~f~~L~~~Gliy~~ 170 (800)
T PRK13208 130 WRRLGLSVDWSLEYQTISPEYRRISQKSFLDLYKKGLIYRA 170 (800)
T ss_pred HHHhCeeeccCCCcccCCHHHHHHHHHHHHHHHHCCCeeec
Confidence 999999999743 345677899999999999999963
No 38
>KOG0436 consensus Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.92 E-value=1.3e-23 Score=209.08 Aligned_cols=316 Identities=17% Similarity=0.219 Sum_probs=222.8
Q ss_pred CCCCCCcccchhhhhHHHHHHHHHHHCCCeEEEeeccCccchHHHHHHHHHHhhCCCCCccCcccHHHHHHHHHHHhccc
Q 010356 95 NIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQEFYRRSKNRF 174 (512)
Q Consensus 95 Np~~~lHvGH~R~~iiGD~lar~l~~~G~~V~~~~~i~D~G~qi~~l~~~~~~~~~~~~~~~~~~i~~l~~~y~~~~~~~ 174 (512)
.|+.++|+||+.++++.|+|||.-+..|-.|++....+.+|..|...++. .
T Consensus 49 YvNAaPHlGhlYS~llaDai~R~q~lkg~~v~fsTGTDEHGlKIqtaaat-----------n------------------ 99 (578)
T KOG0436|consen 49 YVNAAPHLGHLYSTLLADAIARFQRLKGKKVIFSTGTDEHGLKIQTAAAT-----------N------------------ 99 (578)
T ss_pred ecCCCcchhHHHHHHHHHHHHHHHhhcCCceEeecCCCccchhhhhhHhh-----------c------------------
Confidence 67789999999999999999999999999999999888887766543321 0
Q ss_pred CCChHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHcCCeEee---eccccccCchHHHHHHHHhCCCeee
Q 010356 175 DSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEE---KGESFYNPYIPGVIDELSKQGLVEE 251 (512)
Q Consensus 175 ~~~~~~~~~~~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~L~I~f~~---~~es~~~~~v~~~~~~L~~~g~~~~ 251 (512)
.-+| .++||...+.|.+.++..||.++. .++..|...|++....+.++|++|.
T Consensus 100 G~~P------------------------~e~cDr~s~~f~qL~k~~gi~yt~FIRTTdpkH~a~Vqefw~~~~knG~iy~ 155 (578)
T KOG0436|consen 100 GRNP------------------------PELCDRISQSFRQLWKDAGIAYTKFIRTTDPKHEAIVQEFWARVFKNGDIYR 155 (578)
T ss_pred CCCh------------------------HHHHhhhhHHHHHHHHHhCcchhheeecCCchHHHHHHHHHHHHHhCCceee
Confidence 1122 357888889999999999999842 3567888899999999999999996
Q ss_pred e--CceEEEEecC------------CC--------CCeEEEecCCccccccc----------------------------
Q 010356 252 S--QGARVIFIEG------------VN--------IPLIIVKSDGGFNYAST---------------------------- 281 (512)
Q Consensus 252 ~--dGa~~~~~~g------------~~--------~d~vl~ksDG~~~Y~~~---------------------------- 281 (512)
. +|.+|+..+. .+ +.-|++++. ..|+.+
T Consensus 156 g~~eGwYcvsdEtf~pEskv~k~p~~~gk~vsmEsg~~vv~~kE--~NY~FrLSkfqk~l~d~lrkNP~fvqPs~~~~qV 233 (578)
T KOG0436|consen 156 GDYEGWYCVSDETFYPESKVLKNPCPPGKVVSMESGNPVVWRKE--DNYFFRLSKFQKPLEDHLRKNPRFVQPSYFHNQV 233 (578)
T ss_pred ecccceEeccccccCCHHHHhcCCCCCCceeeeccCCceeEecc--cceeeeHHhhhhHHHHHHhcCCCccCchHHHHHH
Confidence 4 6999886541 00 112333332 233321
Q ss_pred ---------hHHHHH--HHHhhc------CCceEEEEeeCcccchHHHHHHHHHHcCCCCCCC--------CCCCceEEE
Q 010356 282 ---------DLAALW--YRLNEE------KAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADD--------STYPKASHV 336 (512)
Q Consensus 282 ---------DiA~~~--~k~~~~------~~d~~iyV~g~~q~~hf~~l~~~~~~~g~~~~~~--------~~~~~~~Hv 336 (512)
|+.... -++ .| +....|||| |..+...+..+|++++.. +|+ .-.|+
T Consensus 234 l~~lktglpDlSISRpsarl-~WGIPvP~ddsQtIYVW-------fDAL~nYiSvig~~~~~~N~k~~ls~~wP-at~Hv 304 (578)
T KOG0436|consen 234 LSWLKTGLPDLSISRPSARL-DWGIPVPGDDSQTIYVW-------FDALLNYISVIGYPNKQQNLKTALSFGWP-ATLHV 304 (578)
T ss_pred HHHHHcCCCcccccChhhhc-ccCCCCCCCCcceEEEe-------HHHHhhHHHhhcCCchhccccceeecCCC-ceeee
Confidence 111000 001 12 234677887 555555555566543200 111 11232
Q ss_pred -----------------------------EeEEEECCCCcceeeecCCeecHHHHHHHHHHHHHHHHHHhcCCCCCCHHH
Q 010356 337 -----------------------------GFGLVLGEDGKRLRTRFSEVVRLVDLLDEAKNRSKAVLIERGKDKEWTEEE 387 (512)
Q Consensus 337 -----------------------------~~g~V~~~~g~kmSkR~G~~v~l~dll~~~~~~~~~~~~~~~~~~~~~~~~ 387 (512)
.+|+.+ .+|.|||||.||+|.+.++++.
T Consensus 305 IGKDIlrFHavYWPafLmaAGlplP~~I~vHghwt-~ngmKMsKSLGNvvdP~~l~~k---------------------- 361 (578)
T KOG0436|consen 305 IGKDILRFHAVYWPAFLMAAGLPLPKMIFVHGHWT-KNGMKMSKSLGNVVDPFELVQK---------------------- 361 (578)
T ss_pred hhhhhhhhhhhhhHHHHHhcCCCCccEEEEeeeee-ecceecchhhccccCHHHHHHH----------------------
Confidence 345555 6799999999999999999998
Q ss_pred HHHHHHhhchhhHHHHhhccC-CCCCccccccccccc-cCCchHHHHHHHHHHHH--HHHhhcCChhhhhhcCCCCCCCH
Q 010356 388 LEQTAEAVGYGAAKYFDLKNN-RLTNYTFSFDQMLND-KGNTAVYLLYAHARICS--IIRKSGKDIEELKKTGSLVLDHA 463 (512)
Q Consensus 388 ~~~~a~~~~~~airy~~L~~~-~~~~~~Fd~~~~~~~-~~~~g~ylqY~~aR~~s--il~k~~~~~~~~~~~~~~~l~~~ 463 (512)
+|+|++|||+|++. ...|-+|+.+++... |.....-++...+|+++ ++-+........+ +.....
T Consensus 362 -------ygvD~vRyflLr~~~l~~Dgdy~eekl~k~~n~~La~~lG~LlnRc~gkkln~sn~e~~l~~~----s~~v~a 430 (578)
T KOG0436|consen 362 -------YGVDAVRYFLLREGELGNDGDYSEEKLIKIVNAHLANTLGNLLNRCLGKKLNISNCESTLVVD----SPTVAA 430 (578)
T ss_pred -------hCccceeeEeeeccccCCCCCccHHHHHHHHHHHHHHHHHHHHHHHhhcccChhccccccccC----Ccchhh
Confidence 89999999999985 589999999999875 46667788888899987 3322211100000 111122
Q ss_pred HHHHHHHHHHhhHHHHHHHHHhcChHHHHHHHHHHHHHHhcchhc
Q 010356 464 DERALGLHLLHFSEVIEEALTNLLPNVVCEYLYNLSEYFTRFYSN 508 (512)
Q Consensus 464 ~e~~L~~~l~~~~~~v~~a~~~~~p~~l~~yl~~La~~fn~fY~~ 508 (512)
+...|...+...|+++.+.++.+....+|+.+.++..+.|.|.+.
T Consensus 431 e~~~lv~~v~kl~ev~a~~~d~f~~~~ale~V~si~n~~ntlvq~ 475 (578)
T KOG0436|consen 431 EGEPLVDTVEKLPEVAATNYDNFSLYSALEAVLSIGNAGNTLVQQ 475 (578)
T ss_pred ccchHHHHHHHhHHHHHhhcccccHHHHHHHHHHHHHhhhhhhhh
Confidence 334699999999999999999999999999999999999999865
No 39
>PRK05729 valS valyl-tRNA synthetase; Reviewed
Probab=99.91 E-value=1.6e-22 Score=230.94 Aligned_cols=136 Identities=20% Similarity=0.210 Sum_probs=102.8
Q ss_pred EEEeEEEECCCCcceeeecCCeecHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhchhhHHHHhhcc-CCCCCc
Q 010356 335 HVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKN-NRLTNY 413 (512)
Q Consensus 335 Hv~~g~V~~~~g~kmSkR~G~~v~l~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~airy~~L~~-~~~~~~ 413 (512)
++.+|+|++.+|+|||||+||+|++.|++++ +|+||+||++++. .+.+|+
T Consensus 507 v~~hG~v~d~~G~KMSKSlGNvIdP~dvi~~-----------------------------yGaDalR~~ll~~~~~~~Di 557 (874)
T PRK05729 507 VYIHGLVRDEQGRKMSKSKGNVIDPLDLIDK-----------------------------YGADALRFTLAALASPGRDI 557 (874)
T ss_pred eEEeeeEECCCCCCcccCCCCCCCHHHHHHH-----------------------------hChHHHHHHHHhCCCCCCCc
Confidence 3456999988999999999999999999998 7999999999988 568999
Q ss_pred cccccccccccCCchHHHHHHHHHHHHHH-HhhcCChhhhhhcCCCCCCCHHHHHHHHHHHhhHHHHHHHHHhcChHHHH
Q 010356 414 TFSFDQMLNDKGNTAVYLLYAHARICSII-RKSGKDIEELKKTGSLVLDHADERALGLHLLHFSEVIEEALTNLLPNVVC 492 (512)
Q Consensus 414 ~Fd~~~~~~~~~~~g~ylqY~~aR~~sil-~k~~~~~~~~~~~~~~~l~~~~e~~L~~~l~~~~~~v~~a~~~~~p~~l~ 492 (512)
+||++.+.... +..+-+- ..+|..++. .+.... ..+. ... .++.++.++..+..+.+.+.+++++++++.++
T Consensus 558 ~fs~~~l~~~~-~~~nkl~-N~~Rf~~~~~~~~~~~--~~~~--~~~-~~~~D~wil~~l~~~~~~v~~~~e~y~f~~a~ 630 (874)
T PRK05729 558 RFDEERVEGYR-NFANKLW-NASRFVLMNLEGADVG--ELPD--PEE-LSLADRWILSRLNRTVAEVTEALDKYRFDEAA 630 (874)
T ss_pred eeCHHHHHHHH-HHHHHHH-HHHHHHHHhcccCCcc--cccc--ccc-CCHHHHHHHHHHHHHHHHHHHHHHccCHHHHH
Confidence 99999976543 2233332 346665432 111111 1110 011 24667889999999999999999999999999
Q ss_pred HHHHHHH-HHHhcch
Q 010356 493 EYLYNLS-EYFTRFY 506 (512)
Q Consensus 493 ~yl~~La-~~fn~fY 506 (512)
+.+++++ ..|.++|
T Consensus 631 ~~l~~f~~~~~~~~Y 645 (874)
T PRK05729 631 RALYEFIWNEFCDWY 645 (874)
T ss_pred HHHHHHHHHHHHHHH
Confidence 9999998 5677766
No 40
>PF09334 tRNA-synt_1g: tRNA synthetases class I (M); InterPro: IPR015413 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found in methionyl and leucyl tRNA synthetases. ; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2D5B_A 1A8H_A 1WOY_A 2D54_A 4DLP_A 2CT8_B 2CSX_A 1MED_A 1PFU_A 1PFW_A ....
Probab=99.91 E-value=9.4e-24 Score=219.87 Aligned_cols=262 Identities=20% Similarity=0.258 Sum_probs=164.5
Q ss_pred EEEEeeCCCCCCCCcccchhhhhHHHHHHHHHHHCCCeEEEeeccCccchHHHHHHHHHHhhCCCCCccCcccHHHHHHH
Q 010356 87 AVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQEF 166 (512)
Q Consensus 87 v~Ve~~spNp~~~lHvGH~R~~iiGD~lar~l~~~G~~V~~~~~i~D~G~qi~~l~~~~~~~~~~~~~~~~~~i~~l~~~ 166 (512)
++|.-.=|+|||++||||+.+++.+|++||++|..|++|.++...+++|+.|..-|..
T Consensus 1 ~~ITt~~pY~Ng~lHlGH~~~~l~ADv~aR~~r~~G~~v~~~tGtDehG~~i~~~A~~---------------------- 58 (391)
T PF09334_consen 1 FYITTPIPYPNGDLHLGHLYPYLAADVLARYLRLRGHDVLFVTGTDEHGSKIETAAEK---------------------- 58 (391)
T ss_dssp EEEEEEEEETSSS-BHHHHHHHHHHHHHHHHHHHTT-EEEEEEEEE-SSHHHHHHHHH----------------------
T ss_pred CEEecCCCCCCCCCCCChhHHHHHHHHHHHHHhhcccceeeEEecchhhHHHHHHHHH----------------------
Confidence 4577778999999999999999999999999999999999999999999877543211
Q ss_pred HHHHhcccCCChHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHcCCeEeeec---cccccCchHHHHHHH
Q 010356 167 YRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKG---ESFYNPYIPGVIDEL 243 (512)
Q Consensus 167 y~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~L~I~f~~~~---es~~~~~v~~~~~~L 243 (512)
.+.+| +++++...+.|++++++|||++|.+. +..|.+.+++++++|
T Consensus 59 -------~g~~p------------------------~~~~~~~~~~~~~~~~~~~I~~D~F~rTt~~~h~~~v~~i~~~L 107 (391)
T PF09334_consen 59 -------QGIDP------------------------EEFCDKYSAKFKELLEALNISYDRFIRTTDDRHKEFVQEIFKRL 107 (391)
T ss_dssp -------TTS-H------------------------HHHHHHHHHHHHHHHHHTT---SEEEETTSHHHHHHHHHHHHHH
T ss_pred -------cCCCH------------------------HHHHHHHHHHHHHHHHHcCCCCcceeCCCCHHHHHHHHHHHHHH
Confidence 11222 46788888999999999999997553 356778899999999
Q ss_pred HhCCCeeeeC--ceEEEEec---------C------------C-----CCCeE-------EEecCCc-------cccc--
Q 010356 244 SKQGLVEESQ--GARVIFIE---------G------------V-----NIPLI-------IVKSDGG-------FNYA-- 279 (512)
Q Consensus 244 ~~~g~~~~~d--Ga~~~~~~---------g------------~-----~~d~v-------l~ksDG~-------~~Y~-- 279 (512)
.++|++|+.+ |.+|...+ | + ....- .-+..|+ ..|+
T Consensus 108 ~~~G~I~~~~~~~~Yc~~~e~fl~e~~v~g~CP~C~~~~a~g~~Ce~cG~~~~~~~l~~p~~~~~g~~~~~r~e~~~ff~ 187 (391)
T PF09334_consen 108 YDNGYIYKREYEGWYCPSCERFLPESFVEGTCPYCGSDKARGDQCENCGRPLEPEELINPVCKICGSPPEVREEENYFFK 187 (391)
T ss_dssp HHTTSEEEEEEEEEEETTTTEEE-GGGETCEETTT--SSCTTTEETTTSSBEECCCSECEEETTTS-B-EEEEEEEEEE-
T ss_pred HhcCceeecccceeEecCcCcccccceeeccccCcCccccCCCcccCCCCCcccccccCCccccccccCccccceEEEEe
Confidence 9999999754 44443211 1 0 00000 0001111 1111
Q ss_pred ------------------------------------------------------------cchH--HHH------HHH--
Q 010356 280 ------------------------------------------------------------STDL--AAL------WYR-- 289 (512)
Q Consensus 280 ------------------------------------------------------------~~Di--A~~------~~k-- 289 (512)
.-|. +|. ..+
T Consensus 188 L~~~~~~L~~~l~~~~~~~~~~~~~~~~~~l~~~L~d~~Is~~~~WGI~vP~~~~~~iyVWfdal~~Ylt~~~~~~~~~~ 267 (391)
T PF09334_consen 188 LSKFRDQLREWLESNPDFPPPRVREIVRNWLKEGLPDLSISRPLDWGIPVPGDPGQVIYVWFDALIGYLTATGYLAEKRG 267 (391)
T ss_dssp GGGGHHHHHHHHHHSTTSSHHHHHHHHHHHHHT----EE-ECTTSSSEEETTEEEEEE-HHHHHHTHHHHTTTTTHHHTT
T ss_pred hHHhHHHHHHHHhcCCCCCChhHHHHHHHHhhcccCceeeecCCCCcceeeccCCceEEEcchHHHHHHHHhcccccccc
Confidence 1110 000 000
Q ss_pred ----Hh-hc---CCceEEEEeeCcccchHHHHH-HHHHHcCCCCCCCCCCCceEEEEeEEEECCCCcceeeecCCeecHH
Q 010356 290 ----LN-EE---KAEWIIYVTDVGQQLHFDMVF-SAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLV 360 (512)
Q Consensus 290 ----~~-~~---~~d~~iyV~g~~q~~hf~~l~-~~~~~~g~~~~~~~~~~~~~Hv~~g~V~~~~g~kmSkR~G~~v~l~ 360 (512)
+. -| .-..++++.|.|...++.-++ +++.++|+. ++.. .+.+|+++ .+|+|||||+||+|.++
T Consensus 268 ~~~~~~~~w~~~~~~~~v~~iGkDi~~fH~i~~pa~l~a~~~~-----lP~~--i~~~~~~~-~~g~K~SkS~gn~i~~~ 339 (391)
T PF09334_consen 268 DPEEFKKWWANDSDVEIVHFIGKDIIRFHAIYWPAMLLAAGLP-----LPRR--IVVHGFLT-LDGEKMSKSRGNVIWPD 339 (391)
T ss_dssp TSHHHHHHHCST--SEEEEEEEGGGHHHHHTHHHHHHHHCTB--------SE--EEEE--EE-ETTCCEETTTTESSBHH
T ss_pred ccchhhhhccccCCceEEEEEccchhHHHHHHhHHHHhcccCC-----CCCE--EEeeeeEE-ECCeeccccCCcccCHH
Confidence 00 01 112466777777544333333 445667763 2233 23568888 47899999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhchhhHHHHhhccCC-CCCcccccccccc-ccCCchHHHHHHHHHH
Q 010356 361 DLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNR-LTNYTFSFDQMLN-DKGNTAVYLLYAHARI 438 (512)
Q Consensus 361 dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~airy~~L~~~~-~~~~~Fd~~~~~~-~~~~~g~ylqY~~aR~ 438 (512)
|++++ +|+|++|||+++..+ .++.+|+++.+.+ .|++...-+++...|+
T Consensus 340 ~~~~~-----------------------------~~~D~~R~~L~~~~~~~~d~~F~~~~~~~~~n~~L~~~~gNl~~R~ 390 (391)
T PF09334_consen 340 DLLEE-----------------------------YGADALRYYLAREGPEGQDSDFSWEDFIERVNNELANTLGNLVNRV 390 (391)
T ss_dssp HHHHH-----------------------------H-HHHHHHHHHHHSSTTS-EEE-HHHHHHHHHHCCCCCHHHHHHHH
T ss_pred HHHHh-----------------------------CChHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHhhhhHHhcc
Confidence 99998 799999999999876 7899999999877 3545444444444665
No 41
>TIGR00422 valS valyl-tRNA synthetase. The valyl-tRNA synthetase (ValS) is a class I amino acyl-tRNA ligase and is particularly closely related to the isoleucyl tRNA synthetase.
Probab=99.91 E-value=4.4e-22 Score=227.34 Aligned_cols=156 Identities=17% Similarity=0.150 Sum_probs=110.7
Q ss_pred CHHHHHHHHHHHHHcCCCCCCC-cCCCceEEEEeeCCCCCCCCcccchhhhhHHHHHHHHHHHCCCeEEEeeccCccchH
Q 010356 59 SKNWMAKNIQKMLVDGIETWAP-KLRVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQ 137 (512)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~Ve~~spNp~~~lHvGH~R~~iiGD~lar~l~~~G~~V~~~~~i~D~G~q 137 (512)
++..+.....+..++....... ....++..|...-||+||+|||||+++.++.|+++|+.|++|++|.+....+.+|.+
T Consensus 6 ~~~~iE~~~~~~W~~~~~f~~~~~~~~~~f~i~~ppPy~nG~lHiGH~~~~~~~D~~~Ry~rm~G~~vl~~~G~D~~Glp 85 (861)
T TIGR00422 6 DPHEVEKKWYKKWEKSGFFKPDGNSNKPPFCIDIPPPNVTGSLHIGHALNWSIQDIIARYKRMKGYNVLWLPGTDHAGIA 85 (861)
T ss_pred CHHHHHHHHHHHHHHCCCcccCcccCCCeEEEEeCCCCCCCCCcHHHhHHHHHHHHHHHHHHhcCCcccCCCCcCcCCCc
Confidence 3444555555555443321111 123467889899999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHhhCCCCCccCcccHHHHHHHHHHHhcccCCChHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHH
Q 010356 138 FGMLIEYLFEKFPNSEDANETAIGELQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVY 217 (512)
Q Consensus 138 i~~l~~~~~~~~~~~~~~~~~~i~~l~~~y~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~ 217 (512)
+...+.... +.. +....+ -|..+..+..+++++.+...+++.+
T Consensus 86 ~e~~vek~~---~~~----g~~~~~------------------------------~~~e~f~~~~~~~~~~~~~~~~~~~ 128 (861)
T TIGR00422 86 TQVKVEKKL---GAE----GKTKHD------------------------------LGREEFREKIWEWKEESGGTIKNQI 128 (861)
T ss_pred HHHHHHHHh---ccc----CCchhh------------------------------CCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 875543211 100 000000 0111223344566888899999999
Q ss_pred HHcCCeEeeec-----cccccCchHHHHHHHHhCCCeee
Q 010356 218 KRLRVDLEEKG-----ESFYNPYIPGVIDELSKQGLVEE 251 (512)
Q Consensus 218 ~~L~I~f~~~~-----es~~~~~v~~~~~~L~~~g~~~~ 251 (512)
++||+.+||.. +..|...+.+++.+|.++|++|+
T Consensus 129 ~~lG~s~Dw~r~~~T~d~~~~~~v~~~F~~L~~~GlIy~ 167 (861)
T TIGR00422 129 KRLGASLDWSRERFTMDEGLSKAVKEAFVRLYEKGLIYR 167 (861)
T ss_pred HHhCeeeecCCCcCcCCHHHHHHHHHHHHHHHHCCCeee
Confidence 99999999853 23466789999999999999996
No 42
>cd00802 class_I_aaRS_core catalytic core domain of class I amino acyl-tRNA synthetase. Class I amino acyl-tRNA synthetase (aaRS) catalytic core domain. These enzymes are mostly monomers which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=99.89 E-value=1.6e-22 Score=182.32 Aligned_cols=143 Identities=22% Similarity=0.223 Sum_probs=118.2
Q ss_pred EEeeCCCCCCCCcccchhhhhHHHHHHHHHHHCCCeEEEeeccCccchHHHHHHHHHHhhCCCCCccCcccHHHHHHHHH
Q 010356 89 VDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQEFYR 168 (512)
Q Consensus 89 Ve~~spNp~~~lHvGH~R~~iiGD~lar~l~~~G~~V~~~~~i~D~G~qi~~l~~~~~~~~~~~~~~~~~~i~~l~~~y~ 168 (512)
|++|+|||+|++||||+|+++++|+++|+||.+|++|..+++++|+|.|++..+...
T Consensus 1 ~~~~~p~~~~~~HlGh~~~~~~~d~~~r~lr~~G~~v~~~~~~dd~~~~~~~~a~~~----------------------- 57 (143)
T cd00802 1 TTFSGITPNGYLHIGHLRTIVTFDFLAQAYRKLGYKVRCIALIDDAGGLIGDPANKK----------------------- 57 (143)
T ss_pred CEecCCCCCCCccHhHHHHHHHHHHHHHHHHHcCCCeEEEeeeCCCchHHHHHHHhc-----------------------
Confidence 579999999999999999999999999999999999999999999999987543110
Q ss_pred HHhcccCCChHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHcCCeEeeeccccccCchHHHHHHHHhCCC
Q 010356 169 RSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKGESFYNPYIPGVIDELSKQGL 248 (512)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~L~I~f~~~~es~~~~~v~~~~~~L~~~g~ 248 (512)
. ..|+++++.+.+.|++.|+
T Consensus 58 ------~------------------------~~~~~~~~~~~~~~~~~~~------------------------------ 77 (143)
T cd00802 58 ------G------------------------ENAKAFVERWIERIKEDVE------------------------------ 77 (143)
T ss_pred ------C------------------------CCHHHHHHHHHHHHHHHHH------------------------------
Confidence 0 2356778888888888877
Q ss_pred eeeeCceEEEEecCCCCCeEEEecCCccccccchHHHHHHHHhhcCCceEEEEeeCcccchHHHHHHHHHHcCCCCCCCC
Q 010356 249 VEESQGARVIFIEGVNIPLIIVKSDGGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDS 328 (512)
Q Consensus 249 ~~~~dGa~~~~~~g~~~d~vl~ksDG~~~Y~~~DiA~~~~k~~~~~~d~~iyV~g~~q~~hf~~l~~~~~~~g~~~~~~~ 328 (512)
|.+.++|...++...+ ..+++.|.||..|+++.+.+++++|..
T Consensus 78 -----------------------------y~~~~~a~~~~~~~~~---~~i~~~G~Dq~~h~~~~~~i~~~~~~~----- 120 (143)
T cd00802 78 -----------------------------YMFLQAADFLLLYETE---CDIHLGGSDQLGHIELGLELLKKAGGP----- 120 (143)
T ss_pred -----------------------------HHHHHHHHHHHHhhCC---cEEEEechhHHHHHHHHHHHHHHhCCC-----
Confidence 9999988777665322 678899999999999999999999852
Q ss_pred CCCceEEEEeEEEECCCCcceeeec
Q 010356 329 TYPKASHVGFGLVLGEDGKRLRTRF 353 (512)
Q Consensus 329 ~~~~~~Hv~~g~V~~~~g~kmSkR~ 353 (512)
..+ .|+.||+|.+.+|+|||||+
T Consensus 121 ~~p--~~~~~~~l~~~~g~KmSks~ 143 (143)
T cd00802 121 ARP--FGLTFGRVMGADGTKMSKSK 143 (143)
T ss_pred CCc--eEEEeCCeECCCCCcCCCCC
Confidence 234 45556999988889999985
No 43
>COG0525 ValS Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.89 E-value=1.6e-20 Score=206.25 Aligned_cols=137 Identities=18% Similarity=0.241 Sum_probs=103.7
Q ss_pred CCCCceEEEEeEEEECCCCcceeeecCCeecHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhchhhHHHHhhcc
Q 010356 328 STYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKN 407 (512)
Q Consensus 328 ~~~~~~~Hv~~g~V~~~~g~kmSkR~G~~v~l~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~airy~~L~~ 407 (512)
||...++| |+|.+++|+|||||+||+|++.|++++ +|.||+||++.+.
T Consensus 508 PFk~V~ih---GLVrDe~G~KMSKS~GNvIDP~d~I~~-----------------------------yGaDAlRf~la~~ 555 (877)
T COG0525 508 PFKDVYIH---GLVRDEQGRKMSKSKGNVIDPLDVIDK-----------------------------YGADALRFTLASL 555 (877)
T ss_pred CccEEEEe---eeEEcCCCCCCcccCCCcCCHHHHHHH-----------------------------hChHHHHHHHHhc
Confidence 45444544 999999999999999999999999998 8999999999988
Q ss_pred -CCCCCccccccccccccCCchHHHH--HHHHHHHHHH-HhhcCChhhhhhcCCCCCCCHHHHHHHHHHHhhHHHHHHHH
Q 010356 408 -NRLTNYTFSFDQMLNDKGNTAVYLL--YAHARICSII-RKSGKDIEELKKTGSLVLDHADERALGLHLLHFSEVIEEAL 483 (512)
Q Consensus 408 -~~~~~~~Fd~~~~~~~~~~~g~ylq--Y~~aR~~sil-~k~~~~~~~~~~~~~~~l~~~~e~~L~~~l~~~~~~v~~a~ 483 (512)
++..|+.||++++.... +|++ +..+|...+. .+.+. .+ ... ...++.++.++..+.+....+.+++
T Consensus 556 ~~~G~Di~~~~~~~~~~r----nF~nKlWNa~Rfv~~~~~~~~~--~~---~~~-~~~~~~drWIls~l~~~v~~v~~~l 625 (877)
T COG0525 556 ASPGRDINFDEKRVEGYR----NFLNKLWNATRFVLMNLDDLGP--DD---LDL-LALSLADRWILSRLNETVKEVTEAL 625 (877)
T ss_pred cCCCcccCcCHHHHHHHH----HHHHHHHhHHHHHHhcccccCc--cc---ccc-cccchHHHHHHHHHHHHHHHHHHHH
Confidence 67899999999886421 2332 3444544332 11111 00 000 1115778999999999999999999
Q ss_pred HhcChHHHHHHHHHHH-HHHhcch
Q 010356 484 TNLLPNVVCEYLYNLS-EYFTRFY 506 (512)
Q Consensus 484 ~~~~p~~l~~yl~~La-~~fn~fY 506 (512)
++|+...+++.|+++. ..|-.+|
T Consensus 626 d~y~f~~a~~~ly~F~W~~fcD~Y 649 (877)
T COG0525 626 DNYRFDEAARALYEFIWNDFCDWY 649 (877)
T ss_pred HhhhHHHHHHHHHHHhHHHHHHHH
Confidence 9999999999999977 7776666
No 44
>TIGR00464 gltX_bact glutamyl-tRNA synthetase, bacterial family. The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the bacterial and mitochondrial forms of the enzyme. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu). This model is highly specific. Proteins with positive scores below the trusted cutoff may be fragments rather than full-length sequences.
Probab=99.89 E-value=2.8e-22 Score=212.77 Aligned_cols=140 Identities=17% Similarity=0.233 Sum_probs=110.8
Q ss_pred CCeEEEecCCccccccchHHHHHHHHhhcCCceEEEEeeCcccchHHHHHHHHHHcCCCCCCCCCCCceEEEEeEEEECC
Q 010356 265 IPLIIVKSDGGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGE 344 (512)
Q Consensus 265 ~d~vl~ksDG~~~Y~~~DiA~~~~k~~~~~~d~~iyV~g~~q~~hf~~l~~~~~~~g~~~~~~~~~~~~~Hv~~g~V~~~ 344 (512)
.|+||+|+||+|||. +|++.+++ ..+++|+| +|.||..+++++..+++++|+. .+.+.|+++ + .+.
T Consensus 172 ~D~Vl~RsdG~ptY~---~A~~vdD~-~~~ithvI--rG~d~~~~t~~~~~l~~aLg~~------~p~~~H~p~-l-~~~ 237 (470)
T TIGR00464 172 DDFVILRSDGSPTYN---FAVVVDDY-LMKITHVI--RGEDHISNTPKQILIYQALGWK------IPVFAHLPM-I-LDE 237 (470)
T ss_pred CCeEEEecCCCcccc---cHHHHHHH-hCCCCEEE--ECchhhcCHHHHHHHHHHcCCC------CCeEEEEee-e-ecC
Confidence 589999999999999 89999998 46899997 9999999999999999999973 578999977 4 447
Q ss_pred CCcceeeecCCeecHHHHHHHHH--HHHHHHHHHhcCCCCCCHHHHHHHHHhhchhhHHHHhhccCCCCCcccccccccc
Q 010356 345 DGKRLRTRFSEVVRLVDLLDEAK--NRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNRLTNYTFSFDQMLN 422 (512)
Q Consensus 345 ~g~kmSkR~G~~v~l~dll~~~~--~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~airy~~L~~~~~~~~~Fd~~~~~~ 422 (512)
+|+|||||+| .+++++++++++ +...+++... +|++....++. -..+++++|+|+..+.+++.|||+++..
T Consensus 238 ~g~kLSKR~g-~~~l~~l~~~g~~p~a~~~~~~~l----G~~~~~~~e~~--~~~~~i~~f~l~~~~~~~~~fd~~kL~~ 310 (470)
T TIGR00464 238 DGKKLSKRDG-ATSIMQFKEQGYLPEALINYLALL----GWSPPDDQEFF--SLEELIEIFSLNRVSKSPAKFDWKKLQW 310 (470)
T ss_pred CCccccccCC-CccHHHHHHCCCCHHHHHHHHHHc----CCCCCCccccC--CHHHHHHhcCcccCCCCCCeecHHHHHH
Confidence 8999999999 789999999984 3345555432 33221000000 0137899999999999999999999877
Q ss_pred ccC
Q 010356 423 DKG 425 (512)
Q Consensus 423 ~~~ 425 (512)
+|+
T Consensus 311 ~N~ 313 (470)
T TIGR00464 311 LNA 313 (470)
T ss_pred HHH
Confidence 775
No 45
>PRK00750 lysK lysyl-tRNA synthetase; Reviewed
Probab=99.88 E-value=3.1e-21 Score=207.04 Aligned_cols=255 Identities=16% Similarity=0.214 Sum_probs=165.1
Q ss_pred eEEEEeeCCCCCCCCcccchhhhhHHHHHHHHHHHCCCeEEEeeccCccchHHHHHHHHHHhhCCCC---CccCcccHHH
Q 010356 86 KAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNS---EDANETAIGE 162 (512)
Q Consensus 86 ~v~Ve~~spNp~~~lHvGH~R~~iiGD~lar~l~~~G~~V~~~~~i~D~G~qi~~l~~~~~~~~~~~---~~~~~~~i~~ 162 (512)
.++| -|+..|+|++||||+|..+.+|+++|.||..|++|..++..+|+|. +..+ ....|+. ..+.|.++..
T Consensus 24 ~~~~-~~g~~psG~~HiG~~~e~~~~d~v~r~lr~~G~~v~~i~~~Dd~d~-lRkv----p~~~p~~~~~~~~~G~pl~~ 97 (510)
T PRK00750 24 PVVV-ETGIGPSGLPHIGNFREVARTDMVRRALRDLGIKTRLIFFSDDMDG-LRKV----PDNVPNQEMLEEYLGKPLTE 97 (510)
T ss_pred cEEE-EeCCCCCCCcccccccchhhHHHHHHHHHHcCCcEEEEEEEecCCc-cccc----CCCCCchHHHHHhcCccccc
Confidence 3666 6677899999999999999999999999999999999999999985 1100 0000100 0001222211
Q ss_pred HHHHHHHHhcccCCChHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHcCCeEeeecc-ccc-cCc-hHHH
Q 010356 163 LQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKGE-SFY-NPY-IPGV 239 (512)
Q Consensus 163 l~~~y~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~L~I~f~~~~e-s~~-~~~-v~~~ 239 (512)
+ .+| .|. .+.+++.+...|.+.+++|||+++.++. ..| ++. .+.+
T Consensus 98 ~------------p~p--------------~G~------~~~~~~~~~~~~~~~~~~~gi~~d~~~~t~~y~~g~~~~~i 145 (510)
T PRK00750 98 I------------PDP--------------FGC------HESYAEHFNAPLREFLDRFGIEYEFISATECYKSGRYDEAI 145 (510)
T ss_pred C------------CCC--------------CCC------chHHHHHHHHHHHHHHHHcCCceEEEehhhhhccCchHHHH
Confidence 0 111 111 2457889999999999999999986543 344 433 4445
Q ss_pred HHHHHhCCCeee--------eCceEEEEe----c--CCCCCeEEEecC---Cccccccc-------hHHH----HHHHH-
Q 010356 240 IDELSKQGLVEE--------SQGARVIFI----E--GVNIPLIIVKSD---GGFNYAST-------DLAA----LWYRL- 290 (512)
Q Consensus 240 ~~~L~~~g~~~~--------~dGa~~~~~----~--g~~~d~vl~ksD---G~~~Y~~~-------DiA~----~~~k~- 290 (512)
...|.+++.+.+ +-..-|+.. + |.....++..-| |+.+|.+. |+-- .-||+
T Consensus 146 ~~~l~~~~~i~~il~~~~~~~~~~~~~P~~pic~~cg~~~~~~~~~~d~~~~~v~y~~~cG~~~~~~~~~g~~KL~Wr~d 225 (510)
T PRK00750 146 LTALENRDEIMEILLPYLGEERQATYSPFLPICPKCGKVLTTPVISYDAEAGTVTYDCECGHEGEVPVTGGHGKLQWKVD 225 (510)
T ss_pred HHHHHhHHHHHHHHHHhcCCccCCCeeeeeeeCCCCCccceEEEEEEeCCCCEEEEEcCCCCEEEEecCCCCcccCCCCC
Confidence 555555565442 111122222 1 433222332222 34566542 1100 11222
Q ss_pred -----hhcCCceEEEEeeCcccc-hHHHHHHHHH-HcCCCCCCCCCCCceEEEEeEEEECCCCcceeeecCCeecHHHHH
Q 010356 291 -----NEEKAEWIIYVTDVGQQL-HFDMVFSAAK-RAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLL 363 (512)
Q Consensus 291 -----~~~~~d~~iyV~g~~q~~-hf~~l~~~~~-~~g~~~~~~~~~~~~~Hv~~g~V~~~~g~kmSkR~G~~v~l~dll 363 (512)
.-.+.| +-+.|.||.. ++.....+++ .+|+.+ + .|+.||+|++.+|+|||||+||+|+++|++
T Consensus 226 W~~rW~~l~Vd--~e~~GkDh~~~s~~~~~~i~~~ilg~~~------P--~~~~y~~v~~~~G~KMSKSkGN~i~~~d~l 295 (510)
T PRK00750 226 WPMRWAALGVD--FEPFGKDHASASYDTSKKIAREILGGEP------P--EPFVYELFLDKKGEKISKSKGNVITIEDWL 295 (510)
T ss_pred cHHHHHHcCCC--EEeeCcccCcchHHHHHHHHHHHcCCCC------C--eeeeeeeEEeCCCCcccccCCCccCHHHHH
Confidence 112334 5679999999 9999999998 999853 2 345679999777999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhchhhHHHHhh-ccCCCCCccccc
Q 010356 364 DEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDL-KNNRLTNYTFSF 417 (512)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~airy~~L-~~~~~~~~~Fd~ 417 (512)
+. ++++++|||++ +.++.++++|++
T Consensus 296 ~~-----------------------------~~pd~lR~~l~~~~~~~~~~~f~~ 321 (510)
T PRK00750 296 EY-----------------------------APPESLRLFMFARPKPAKRLDFDV 321 (510)
T ss_pred HH-----------------------------CCHHHHHHHHHhCCCCCCCCcccH
Confidence 88 69999997777 557789999998
No 46
>PRK06039 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=99.88 E-value=2.5e-20 Score=214.55 Aligned_cols=132 Identities=20% Similarity=0.211 Sum_probs=101.2
Q ss_pred CceEEEEeeCCCCCCCCcccchhhhhHHHHHHHHHHHCCCeEEEeeccCccchHHHHHHHHHHhhCCCCCccCcccHHHH
Q 010356 84 VKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGEL 163 (512)
Q Consensus 84 ~~~v~Ve~~spNp~~~lHvGH~R~~iiGD~lar~l~~~G~~V~~~~~i~D~G~qi~~l~~~~~~~~~~~~~~~~~~i~~l 163 (512)
+++..|.-.-||+||.+|+||+++.++.|+++|+.++.||+|.+....+-+|.++...+... ++-. ....+.+
T Consensus 40 ~~~f~i~~~PPy~nG~lH~GH~l~~t~kD~i~Ry~rm~G~~v~~~~GwD~~GlPie~~vek~---l~~~---~~~~i~~- 112 (975)
T PRK06039 40 GPEFVFYDGPPTANGLPHYGHLLTRTIKDVVPRYKTMKGYKVERRAGWDTHGLPVELEVEKE---LGIS---GKKDIEE- 112 (975)
T ss_pred CCCEEEeCCCCCCCCCccHhhhHhhHHHHHHHHHHHhCCCcccCcCCcCCCccHHHHHHHHH---hCcc---cccchhh-
Confidence 45688889999999999999999999999999999999999999999999999998654221 1100 0011111
Q ss_pred HHHHHHHhcccCCChHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHcCCeEeeecc-----ccccCchHH
Q 010356 164 QEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKGE-----SFYNPYIPG 238 (512)
Q Consensus 164 ~~~y~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~L~I~f~~~~e-----s~~~~~v~~ 238 (512)
+ |.++..+.+++++..+.+.+++.+++||+.+||..+ ..|.+.+..
T Consensus 113 ----------~-------------------g~~~f~~~c~~~~~~~~~~~~~~~~rlG~~~Dw~~~y~T~d~~y~~~v~~ 163 (975)
T PRK06039 113 ----------Y-------------------GIEKFNEKCRESVLRYTDEWEEYTERLGRWVDFDNPYKTLDNEYMESVWW 163 (975)
T ss_pred ----------c-------------------CHHHHHHHHHHHHHHHHHHHHHHHHHhCceeecCCCcCcCCHHHHHHHHH
Confidence 0 122233444566778889999999999999988543 346678999
Q ss_pred HHHHHHhCCCeee
Q 010356 239 VIDELSKQGLVEE 251 (512)
Q Consensus 239 ~~~~L~~~g~~~~ 251 (512)
++.+|.++|++|+
T Consensus 164 ~F~~l~~kGliyr 176 (975)
T PRK06039 164 ALKQLYDKGLLYK 176 (975)
T ss_pred HHHHHHHCCCEEe
Confidence 9999999999885
No 47
>TIGR00392 ileS isoleucyl-tRNA synthetase. The isoleucyl tRNA synthetase (IleS) is a class I amino acyl-tRNA ligase and is particularly closely related to the valyl tRNA synthetase. This model may recognize IleS from every species, including eukaryotic cytosolic and mitochondrial forms.
Probab=99.88 E-value=1.6e-20 Score=214.71 Aligned_cols=138 Identities=14% Similarity=0.180 Sum_probs=104.4
Q ss_pred EEeEEEECCCCcceeeecCCeecHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhchhhHHHHhhccCCCCCccc
Q 010356 336 VGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNRLTNYTF 415 (512)
Q Consensus 336 v~~g~V~~~~g~kmSkR~G~~v~l~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~airy~~L~~~~~~~~~F 415 (512)
+.+|+|++.+|+|||||+||+|++.|++++ +|+|++||++++..+.+|++|
T Consensus 599 ~~hG~vl~~~G~KMSKSkGNvI~p~d~i~~-----------------------------yGaDalR~~ll~~~~~~D~~f 649 (861)
T TIGR00392 599 ITHGFTLDEKGRKMSKSLGNVVDPLKVINK-----------------------------YGADILRLYVASSDPWEDLRF 649 (861)
T ss_pred EecceEECCCCCCcCCCCCCCCCHHHHHHH-----------------------------cCHHHHHHHHHhCCCCCCceE
Confidence 356899977899999999999999999998 799999999999977999999
Q ss_pred cccccccccCCchHHHHHHHHHHH--HHHHhhcCChhhhhhcCCCCCCCHHHHHHHHHHHhhHHHHHHHHHhcChHHHHH
Q 010356 416 SFDQMLNDKGNTAVYLLYAHARIC--SIIRKSGKDIEELKKTGSLVLDHADERALGLHLLHFSEVIEEALTNLLPNVVCE 493 (512)
Q Consensus 416 d~~~~~~~~~~~g~ylqY~~aR~~--sil~k~~~~~~~~~~~~~~~l~~~~e~~L~~~l~~~~~~v~~a~~~~~p~~l~~ 493 (512)
+++.+....++..+.+.++..++. +.+.++......++ ...+ ++.++.|+..+..+.+.+.+++++++++.+++
T Consensus 650 s~~~l~~~~~~~~n~l~N~~~~~~~~~~l~~~~~~~~~~~---~~~l-~~~d~~ll~~l~~~~~~v~~~~e~~~~~~a~~ 725 (861)
T TIGR00392 650 SDEILKQVVEKYRKIRWNTYRFLLTYANLDKFDPLFNSVA---VEKF-PEEDRWILSRLNSLVEEVNEALEKYNFHKVLR 725 (861)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCccccccc---cccC-CHHHHHHHHHHHHHHHHHHHHHHhccHHHHHH
Confidence 999986654433433333333433 44444321100000 0112 46678899999999999999999999999999
Q ss_pred HHHHHHHH-Hhcch
Q 010356 494 YLYNLSEY-FTRFY 506 (512)
Q Consensus 494 yl~~La~~-fn~fY 506 (512)
++++++.. ++++|
T Consensus 726 ~l~~f~~~~l~n~Y 739 (861)
T TIGR00392 726 ALQDFIVEELSNWY 739 (861)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999876 76666
No 48
>PRK14900 valS valyl-tRNA synthetase; Provisional
Probab=99.87 E-value=3.8e-20 Score=213.54 Aligned_cols=158 Identities=16% Similarity=0.158 Sum_probs=110.9
Q ss_pred eCHHHHHHHHHHHHHcCCCCCCC--cCCCceEEEEeeCCCCCCCCcccchhhhhHHHHHHHHHHHCCCeEEEeeccCccc
Q 010356 58 LSKNWMAKNIQKMLVDGIETWAP--KLRVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWG 135 (512)
Q Consensus 58 l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~v~Ve~~spNp~~~lHvGH~R~~iiGD~lar~l~~~G~~V~~~~~i~D~G 135 (512)
.++..+.....+...+...+... ....++..|.-.-|||||.|||||+++.++.|+++|+.|+.||+|.+....+++|
T Consensus 19 y~~~~iE~~~~~~W~~~~~f~~~~~~~~~~~f~i~~pPP~~nG~lHiGH~~~~~~~Di~~Ry~rm~G~~vl~~~G~D~~G 98 (1052)
T PRK14900 19 YEHREVEARWYPFWQERGYFHGDEHDRTRPPFSIVLPPPNVTGSLHLGHALTATLQDVLIRWKRMSGFNTLWLPGTDHAG 98 (1052)
T ss_pred CCHHHHHHHHHHHHHHCCCccCCcccCCCCCEEEecCCCCCCCcchHHHHHhhHHHHHHHHHHHhcCCcccCCCCCCccc
Confidence 45555666666555443321111 1234568888999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhhCCCCCccCcccHHHHHHHHHHHhcccCCChHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHH
Q 010356 136 TQFGMLIEYLFEKFPNSEDANETAIGELQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDK 215 (512)
Q Consensus 136 ~qi~~l~~~~~~~~~~~~~~~~~~i~~l~~~y~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~ 215 (512)
.++...+..- .+... +....+ + |..+.++..+++++.+.+.+.+
T Consensus 99 lp~e~~ve~~---l~~~~---~~~~~~-----------~-------------------~~e~f~~~~~~~~~~~~~~~~~ 142 (1052)
T PRK14900 99 IATQMIVEKE---LKKTE---KKSRHD-----------L-------------------GREAFLERVWAWKEQYGSRIGE 142 (1052)
T ss_pred hHHHHHHHHH---hhhcc---CCChhh-----------C-------------------CHHHHHHHHHHHHHHHHHHHHH
Confidence 9886543211 00000 000000 0 1111223345567888899999
Q ss_pred HHHHcCCeEeeecc-----ccccCchHHHHHHHHhCCCeee
Q 010356 216 VYKRLRVDLEEKGE-----SFYNPYIPGVIDELSKQGLVEE 251 (512)
Q Consensus 216 ~~~~L~I~f~~~~e-----s~~~~~v~~~~~~L~~~g~~~~ 251 (512)
.+++||+.+||..+ ..|...+.+++.+|.++|++|+
T Consensus 143 ~~~~lG~s~Dw~~~~~T~d~~~~~~v~~~F~~L~~~Gliyr 183 (1052)
T PRK14900 143 QHKALGASLDWQRERFTMDEGLSRAVREVFVRLHEEGLIYR 183 (1052)
T ss_pred HHHHhchheecCCCcCcCCHHHHHHHHHHHHHHHHCCCEEe
Confidence 99999999998644 3456789999999999999985
No 49
>PRK01406 gltX glutamyl-tRNA synthetase; Reviewed
Probab=99.86 E-value=1.8e-21 Score=206.75 Aligned_cols=136 Identities=19% Similarity=0.245 Sum_probs=109.5
Q ss_pred CCeEEEecCCccccccchH-HHHHHHHhhcCCceEEEEeeCcccchHHHHHHHHHHcCCCCCCCCCCCceEEEEeEEEEC
Q 010356 265 IPLIIVKSDGGFNYASTDL-AALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLG 343 (512)
Q Consensus 265 ~d~vl~ksDG~~~Y~~~Di-A~~~~k~~~~~~d~~iyV~g~~q~~hf~~l~~~~~~~g~~~~~~~~~~~~~Hv~~g~V~~ 343 (512)
.|+||+|+||+|||.+.|+ +.|.++ .+|+| +|.||..+++++..+++++|+. .+.+.|+++ +.+
T Consensus 182 ~D~Vl~RsDG~ptY~~a~vVdD~~~~-----ithvI--rG~d~~~~t~~q~~l~~alG~~------~p~~~H~pl--i~~ 246 (476)
T PRK01406 182 DDFVILRSDGTPTYNFAVVVDDHLMG-----ITHVI--RGEDHLSNTPKQILLYEALGWE------VPVFAHLPL--ILG 246 (476)
T ss_pred CCcEEEecCCCccccchHHHHHHHcC-----CCEEE--ECchhhcCHHHHHHHHHHhCCC------CCeEEEeee--eeC
Confidence 5899999999999999998 666654 47996 9999999999999999999984 478999976 555
Q ss_pred CCCcceeeecCCeecHHHHHHHHH--HHHHHHHHHhcCCCCCCHH--HHHHHHHhhchhhHHHHhhccCCCCCccccccc
Q 010356 344 EDGKRLRTRFSEVVRLVDLLDEAK--NRSKAVLIERGKDKEWTEE--ELEQTAEAVGYGAAKYFDLKNNRLTNYTFSFDQ 419 (512)
Q Consensus 344 ~~g~kmSkR~G~~v~l~dll~~~~--~~~~~~~~~~~~~~~~~~~--~~~~~a~~~~~~airy~~L~~~~~~~~~Fd~~~ 419 (512)
.+|+|||||+| .+++++++++++ ++..+++..- +|++. ++.. -.+++++|+|+..+.+++.||+++
T Consensus 247 ~~g~klSKR~g-~~~l~~l~~~G~~p~Ai~n~l~~l----G~s~~~~e~~~-----~~~~i~~f~l~~~~~s~~~fd~~k 316 (476)
T PRK01406 247 PDGKKLSKRHG-ATSVEQYRDMGYLPEALLNYLALL----GWSHGDQEIFS-----LEELIELFDLERVSKSPARFDIKK 316 (476)
T ss_pred CCCCcccCcCC-ccCHHHHHHCCCCHHHHHHHHHHh----CCCCCccccCC-----HHHHHHhcChhhCCCCCccccHHH
Confidence 88999999999 789999999975 3455555543 34321 1111 137899999999999999999999
Q ss_pred cccccC
Q 010356 420 MLNDKG 425 (512)
Q Consensus 420 ~~~~~~ 425 (512)
+..+|+
T Consensus 317 L~~~N~ 322 (476)
T PRK01406 317 LDWLNG 322 (476)
T ss_pred HHHHHH
Confidence 999875
No 50
>cd07956 Anticodon_Ia_Arg Anticodon-binding domain of arginyl tRNA synthetases. This domain is found in arginyl tRNA synthetases (ArgRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. ArgRS catalyzes the transfer of arginine to the 3'-end of its tRNA.
Probab=99.86 E-value=5.5e-22 Score=181.43 Aligned_cols=118 Identities=45% Similarity=0.809 Sum_probs=104.2
Q ss_pred hchhhHHHHhhccCCCCCccccccccccccCCchHHHHHHHHHHHHHHHhhcCChhhhhhcCCCCCCCHHHHHHHHHHHh
Q 010356 395 VGYGAAKYFDLKNNRLTNYTFSFDQMLNDKGNTAVYLLYAHARICSIIRKSGKDIEELKKTGSLVLDHADERALGLHLLH 474 (512)
Q Consensus 395 ~~~~airy~~L~~~~~~~~~Fd~~~~~~~~~~~g~ylqY~~aR~~sil~k~~~~~~~~~~~~~~~l~~~~e~~L~~~l~~ 474 (512)
+|++|+||++|++.+.++++|||+++++++|++++|+||+|+|+++|++|+..........+...+.++.|++|+..+..
T Consensus 3 i~~~a~~~~~l~~~~~~~~~fd~~~~~~~~~~~~~yi~ya~aRi~nIl~k~~~~~~~~~~~~~~ll~~~~E~~L~~~l~~ 82 (156)
T cd07956 3 VGVGAVKYQDLSNKRIKDYTFDWERMLSFEGDTGPYLQYAHARLCSILRKAGETIEAEADADLSLLPEPDERDLILLLAK 82 (156)
T ss_pred cchhHHHHHHHhcCCCCCceecHHHHHhhcCCCchhHHHHHHHHHHHHHhCCCcCccccccchhhcCCHHHHHHHHHHHH
Confidence 79999999999999999999999999999999999999999999999999863111001122234567899999999999
Q ss_pred hHHHHHHHHHhcChHHHHHHHHHHHHHHhcchhcccCC
Q 010356 475 FSEVIEEALTNLLPNVVCEYLYNLSEYFTRFYSNCQVQ 512 (512)
Q Consensus 475 ~~~~v~~a~~~~~p~~l~~yl~~La~~fn~fY~~~~vl 512 (512)
+|+++.+++++.+|+.+|+|+.+|+..||+||++|+|+
T Consensus 83 ~~~~i~~~~~~~~~~~l~~~l~~L~~~~~~ffd~v~V~ 120 (156)
T cd07956 83 FPEVVKNAAETLEPHTIATYLFDLAHAFSKFYNACPVL 120 (156)
T ss_pred hHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHhcCccc
Confidence 99999999999999999999999999999999999985
No 51
>PLN02943 aminoacyl-tRNA ligase
Probab=99.85 E-value=6e-19 Score=202.22 Aligned_cols=132 Identities=15% Similarity=0.183 Sum_probs=99.4
Q ss_pred CCceEEEEeeCCCCCCCCcccchhhhhHHHHHHHHHHHCCCeEEEeeccCccchHHHHHHHHHHhhCCCCCccCcccHHH
Q 010356 83 RVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGE 162 (512)
Q Consensus 83 ~~~~v~Ve~~spNp~~~lHvGH~R~~iiGD~lar~l~~~G~~V~~~~~i~D~G~qi~~l~~~~~~~~~~~~~~~~~~i~~ 162 (512)
.+++.+|.-.-|||||+|||||+++.++.|+++|+.|+.||+|.+....+.+|.++...+.......+
T Consensus 86 ~~~~f~i~~pPP~~tG~lHiGHa~~~~~~D~~~Ry~rm~G~~vl~~~G~D~~Gl~~e~~vek~l~~~~------------ 153 (958)
T PLN02943 86 GGDPFVIPMPPPNVTGSLHMGHAMFVTLEDIMVRYNRMKGRPTLWIPGTDHAGIATQLVVEKMLASEG------------ 153 (958)
T ss_pred CCCCEEEecCCCCCCCchhHHHHHHHHHHHHHHHHHHhcCCeeecCCCCCcccchhHHHHHHHHHHcC------------
Confidence 34568888888999999999999999999999999999999999999999999877654321100000
Q ss_pred HHHHHHHHhcccCCChHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHcCCeEeeecc-----ccccCchH
Q 010356 163 LQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKGE-----SFYNPYIP 237 (512)
Q Consensus 163 l~~~y~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~L~I~f~~~~e-----s~~~~~v~ 237 (512)
.++ .+ -|..+.++..+++++.+...+++.+++||+.+||..+ ..|...++
T Consensus 154 -------------~~~--~~----------~~re~f~~~~~~~~~~~~~~~~~~~~~lG~s~Dw~~~~~T~d~~~~~~v~ 208 (958)
T PLN02943 154 -------------IKR--TD----------LGRDEFTKRVWEWKEKYGGTITNQIKRLGASCDWSRERFTLDEQLSRAVV 208 (958)
T ss_pred -------------CCh--hh----------CCHHHHHHHHHHHHHHHHHHHHHHHHHhCcceecCCCcccCCHHHHHHHH
Confidence 000 00 0111223344566888889999999999999998644 34567899
Q ss_pred HHHHHHHhCCCeee
Q 010356 238 GVIDELSKQGLVEE 251 (512)
Q Consensus 238 ~~~~~L~~~g~~~~ 251 (512)
+++.+|.++|++|+
T Consensus 209 ~~F~~l~~~Gliyr 222 (958)
T PLN02943 209 EAFVRLHEKGLIYQ 222 (958)
T ss_pred HHHHHHHHCCCEEe
Confidence 99999999999885
No 52
>PRK05743 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=99.84 E-value=4.3e-19 Score=202.95 Aligned_cols=128 Identities=14% Similarity=0.172 Sum_probs=99.3
Q ss_pred CceEEEEeeCCCCCCCCcccchhhhhHHHHHHHHHHHCCCeEEEeeccCccchHHHHHHHHHHhhCCCCCccCcccHHHH
Q 010356 84 VKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGEL 163 (512)
Q Consensus 84 ~~~v~Ve~~spNp~~~lHvGH~R~~iiGD~lar~l~~~G~~V~~~~~i~D~G~qi~~l~~~~~~~~~~~~~~~~~~i~~l 163 (512)
.++.+|...-||+||++||||++|.++.|+++|+.++.||+|.+....+.+|.++...+... ++. .
T Consensus 48 ~~~f~i~~~pPyanG~lHiGHa~~~~~~Dii~Ry~rm~G~~v~~~~G~D~~Glpie~~~ek~---l~~----~------- 113 (912)
T PRK05743 48 KPKFILHDGPPYANGDIHIGHALNKILKDIIVKSKTMSGFDAPYVPGWDCHGLPIELKVEKK---LGK----K------- 113 (912)
T ss_pred CCcEEEeCCCCCCCCCccHHHHHHHHHHHHHHHHHHccCCcccCCCCcCCCccHhHHHHHHH---cCC----c-------
Confidence 45688989999999999999999999999999999999999999999999999997654221 110 0
Q ss_pred HHHHHHHhcccCCChHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHcCCeEeeec-----cccccCchHH
Q 010356 164 QEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKG-----ESFYNPYIPG 238 (512)
Q Consensus 164 ~~~y~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~L~I~f~~~~-----es~~~~~v~~ 238 (512)
..+.++ .+.++..+++++.+.+.+++.+++||+.+||.. +..|...+.+
T Consensus 114 ---------~~~~~~-----------------~~f~~~c~~~~~~~~~~~~~~~~~lG~~~dw~~~~~T~~~~~~~~v~~ 167 (912)
T PRK05743 114 ---------GKKLSA-----------------AEFRKKCREYALEQVDIQREDFKRLGVLGDWDNPYLTMDFKYEANIIR 167 (912)
T ss_pred ---------cccCCH-----------------HHHHHHHHHHHHHHHHHHHHHHHHhCCcccCCCCcCCCCHHHHHHHHH
Confidence 000111 112334456788888899999999999887643 2356678999
Q ss_pred HHHHHHhCCCeee
Q 010356 239 VIDELSKQGLVEE 251 (512)
Q Consensus 239 ~~~~L~~~g~~~~ 251 (512)
++.+|.++|++|+
T Consensus 168 ~f~~l~~~Gliy~ 180 (912)
T PRK05743 168 ALGKMAKKGYLYK 180 (912)
T ss_pred HHHHHHHCCCEEe
Confidence 9999999998885
No 53
>PRK14895 gltX glutamyl-tRNA synthetase; Provisional
Probab=99.84 E-value=4.6e-20 Score=194.68 Aligned_cols=241 Identities=16% Similarity=0.207 Sum_probs=174.6
Q ss_pred eeCCCCCCCCcccchhhhhHHHHHHHHHHHCCCeEEEeeccCccchHHHHHHHHHHhhCCCCCccCcccHHHHHHHHHHH
Q 010356 91 FSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQEFYRRS 170 (512)
Q Consensus 91 ~~spNp~~~lHvGH~R~~iiGD~lar~l~~~G~~V~~~~~i~D~G~qi~~l~~~~~~~~~~~~~~~~~~i~~l~~~y~~~ 170 (512)
=-.|.|||+|||||+|++++--.+|| +.-|-=+.| |.|..
T Consensus 8 RFAPSPTG~lHiG~artAL~n~l~Ar--~~gG~fiLR---IEDTD----------------------------------- 47 (513)
T PRK14895 8 RFAPSPTGFLHIGSARTALFNYLFAR--HHNGKFLLR---IEDTD----------------------------------- 47 (513)
T ss_pred eeCCCCCCCccHHHHHHHHHHHHHHH--HcCCEEEEE---ECCCC-----------------------------------
Confidence 45799999999999999999999998 345554444 23310
Q ss_pred hcccCCChHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHcCCeEee--eccccccCchHHHHHHHHhCCC
Q 010356 171 KNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEE--KGESFYNPYIPGVIDELSKQGL 248 (512)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~L~I~f~~--~~es~~~~~v~~~~~~L~~~g~ 248 (512)
+ .+....+.+.+.++++.||+..|. +..|...+.-.+++++|.++|.
T Consensus 48 -------~------------------------~R~~~~~~~~i~~~L~WLGl~wDe~py~QSeR~~~Y~~~a~~Li~~G~ 96 (513)
T PRK14895 48 -------K------------------------ERSTKEAVEAIFSGLKWLGLDWNGEVIFQSKRNNLYKEAALKLLQNGK 96 (513)
T ss_pred -------c------------------------cccChHHHHHHHHHHHHcCCCCCCCceeEeCcHHHHHHHHHHHHHcCC
Confidence 0 011223445667788999998762 2245555566788888999998
Q ss_pred eeee-------------------------------------Cce--EEEEec------------C-------CCCCeEEE
Q 010356 249 VEES-------------------------------------QGA--RVIFIE------------G-------VNIPLIIV 270 (512)
Q Consensus 249 ~~~~-------------------------------------dGa--~~~~~~------------g-------~~~d~vl~ 270 (512)
+|.. ++. +-|+++ | .-.|+||+
T Consensus 97 AY~CfCt~eel~~~r~~~~~~~~~~~Y~~~cr~~~~~~~~~~~~~~iR~k~p~~~~~~~~D~v~G~~~~~~~~~~D~Vi~ 176 (513)
T PRK14895 97 AYYCFTRQEEIERQRQQALENKQHFIFNSEWRDKDPSIYPTDIKPVIRLKTPREGSITIHDTLQGEVVIENSHIDDMVLL 176 (513)
T ss_pred eEEecCcHHHHHHHHHhhhccCCCCCCChhhcccChhhhhcCCCeeEEEEcCCCCceEEEeecccceecccccCCCcEEE
Confidence 8730 011 112221 1 12589999
Q ss_pred ecCCccccccchHHHHHHHHhhcCCceEEEEeeCcccchHHHHHHHHHHcCCCCCCCCCCCceEEEEeEEEECCCCccee
Q 010356 271 KSDGGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLR 350 (512)
Q Consensus 271 ksDG~~~Y~~~DiA~~~~k~~~~~~d~~iyV~g~~q~~hf~~l~~~~~~~g~~~~~~~~~~~~~Hv~~g~V~~~~g~kmS 350 (512)
|+||+|||.+. ++.+++ ..+++|+| +|.||..+++++..+++++|+. .+.+.|+++ |.+.+|+|||
T Consensus 177 RsDG~ptY~~a---~vVDD~-~m~ithVI--RG~d~~~~t~~q~~l~~aLG~~------~p~~~H~pl--v~~~~g~KLS 242 (513)
T PRK14895 177 RADGTATYMLA---VVVDDH-DMGITHII--RGDDHLTNAARQLAIYQAFGYA------VPSMTHIPL--IHGADGAKLS 242 (513)
T ss_pred EeCCCcchhhH---HHHHHH-hcCCCEEE--ECchHhhhHHHHHHHHHHcCCC------CCeEEEEEe--EEcCCCCccc
Confidence 99999999975 668887 46899997 9999999999999999999974 478999965 8889999999
Q ss_pred eecCCeecHHHHHHHHH--HHHHHHHHHhcCCCCCCHHHHHHHHHhhch-hhHHHHhhccCCCCCccccccccccccC
Q 010356 351 TRFSEVVRLVDLLDEAK--NRSKAVLIERGKDKEWTEEELEQTAEAVGY-GAAKYFDLKNNRLTNYTFSFDQMLNDKG 425 (512)
Q Consensus 351 kR~G~~v~l~dll~~~~--~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~-~airy~~L~~~~~~~~~Fd~~~~~~~~~ 425 (512)
||.|.. ++.++.+.++ ++..+++..-| |+..+ .+ .+.. +.+..|.+..-..++..||++++..+|+
T Consensus 243 KR~g~~-~i~~~r~~G~~Peai~n~la~LG----~s~~~-~e---~~~~~el~~~F~~~~v~~s~~~FD~~KL~wlN~ 311 (513)
T PRK14895 243 KRHGAL-GIEAYKDMGYLPESLCNYLLRLG----WSHGD-DE---IISMTQAIDWFNLDSLGKSPSKLDFAKMNSLNA 311 (513)
T ss_pred cccCch-hHHHHHHCCCCHHHHHHHHHHhC----CCCCC-cC---CCCHHHHHhhCCHHhCcCCcCcCCHHHHHHHHH
Confidence 999965 8999999887 45677777533 33211 01 1222 4578899999889999999999998875
No 54
>TIGR00467 lysS_arch lysyl-tRNA synthetase, archaeal and spirochete. This model represents the lysyl-tRNA synthetases that are class I amino-acyl tRNA synthetases. It includes archaeal and spirochete examples of the enzyme. All other known examples are class IIc amino-acyl tRNA synthetases and seem to form a separate orthologous set.
Probab=99.83 E-value=2.7e-19 Score=190.82 Aligned_cols=254 Identities=16% Similarity=0.184 Sum_probs=149.2
Q ss_pred eEEEEeeCCCCCCCCcccchhhhhHHHHHHHHHHHCCCeEEEeeccCccchHHHHHHHHHHhhCCCCC-----ccCcccH
Q 010356 86 KAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSE-----DANETAI 160 (512)
Q Consensus 86 ~v~Ve~~spNp~~~lHvGH~R~~iiGD~lar~l~~~G~~V~~~~~i~D~G~qi~~l~~~~~~~~~~~~-----~~~~~~i 160 (512)
+++|+ |+-.|+|++||||+|..+.+|+++|.+|.+|++|..++..+|+.. +. +.|+.- .+-|.||
T Consensus 19 ~~~~~-tg~~psG~~HiG~~~e~~~~d~v~r~~r~~g~~~~~i~~~Dd~D~-lR--------Kvp~~~p~~~~~ylG~Pl 88 (515)
T TIGR00467 19 LYTVA-SGITPSGHIHIGNFREVITADAIARALRDSGSEARFIYIADNYDP-LR--------KVYPFLPEELETYLGMPL 88 (515)
T ss_pred eEEEe-cCCCCCCCccccchhhhhHHHHHHHHHHHcCCCEEEEEEEcCCcc-cc--------cccccccHHHHHhCCCcc
Confidence 67885 555599999999999999999999999999999999999999743 11 111100 0111222
Q ss_pred HHHHHHHHHHhcccCCChHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHcCCeEeeecc-ccc-cCchHH
Q 010356 161 GELQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKGE-SFY-NPYIPG 238 (512)
Q Consensus 161 ~~l~~~y~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~L~I~f~~~~e-s~~-~~~v~~ 238 (512)
.. -.+|. | +. ..+++++...|.+.++.|||+++..+. ..| ++...+
T Consensus 89 ~~------------vpdp~--------------g---~~---~s~~~h~~~~~~~~l~~~gi~~e~~s~te~Y~sG~~~~ 136 (515)
T TIGR00467 89 TR------------IPDPE--------------G---CK---TSYAEHFLIPFLESLPVLGINPEFIRASKQYTSGLYAS 136 (515)
T ss_pred ee------------cCCCC--------------C---Cc---HHHHHHHHHHHHHHHHHcCCeEEEEEHHHhhhcCChHH
Confidence 11 01221 1 11 456888999999999999999965433 344 333222
Q ss_pred HHH-HHHhCCCee----------eeCceEEEEe---c--CCCCCeEE-EecCCccccccc-------hHH----HHHHHH
Q 010356 239 VID-ELSKQGLVE----------ESQGARVIFI---E--GVNIPLII-VKSDGGFNYAST-------DLA----ALWYRL 290 (512)
Q Consensus 239 ~~~-~L~~~g~~~----------~~dGa~~~~~---~--g~~~d~vl-~ksDG~~~Y~~~-------DiA----~~~~k~ 290 (512)
.+. .|.+..-+. ..++ ++-.. + |.....++ +..+.+.+|.+. |+- =.-||+
T Consensus 137 ~i~~~L~~~~~I~~il~~~~~~~~~~~-~~P~~pic~~cGrv~~~~~~~~~~~~v~Y~c~cG~~g~~~~~~g~~KL~Wkv 215 (515)
T TIGR00467 137 QIKIALDHRKEISEILNEYRTSKLEEN-WYPISVFCENCGRDTTTVNNYDNEYSIEYSCECGNQESVDIYTGAIKLPWRV 215 (515)
T ss_pred HHHHHHHhHHHHHHHHHHhcCCccCCC-ceeeeeecCCcCccCceEEEecCCceEEEEcCCCCEEEEeecCCCcccCCCC
Confidence 222 222222111 1122 22111 1 32211222 111234455431 110 011222
Q ss_pred hhcCCce-----EEEEeeCcccc----hHHHHHHHHHHcCCCCCCCCCCCceEEEEeEEE-ECCCCcceeeecCCeecHH
Q 010356 291 NEEKAEW-----IIYVTDVGQQL----HFDMVFSAAKRAGWLSADDSTYPKASHVGFGLV-LGEDGKRLRTRFSEVVRLV 360 (512)
Q Consensus 291 ~~~~~d~-----~iyV~g~~q~~----hf~~l~~~~~~~g~~~~~~~~~~~~~Hv~~g~V-~~~~g~kmSkR~G~~v~l~ 360 (512)
.|...| .+=-+|.||.. +-.....+.+++|..| | .++.|+|| +..+|+|||||+||+|+++
T Consensus 216 -dW~~RW~~lgV~~Ep~GkDH~~~ggsy~~~~~ia~~~l~~~~---P-----~~~~ye~v~L~~~g~KMSKS~Gn~itl~ 286 (515)
T TIGR00467 216 -DWPARWKIEKVTFEPAGKDHAAAGGSYDTGVNIAKEIFQYSP---P-----VTVQYEWISLKGKGGKMSSSKGDVISVK 286 (515)
T ss_pred -CcHhhHhhhCcccccCCCCccCccCCchhHHHHHHHHhCCCC---C-----cCcEEEEEEEcCCCccccCCCCCCccHH
Confidence 111111 11235666654 4445544446887642 1 12345665 3346789999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhchhhHHHHhhccCCCCCcccccccc
Q 010356 361 DLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNRLTNYTFSFDQM 420 (512)
Q Consensus 361 dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~airy~~L~~~~~~~~~Fd~~~~ 420 (512)
|+++. ++++++||++++.++.++++||++.+
T Consensus 287 dll~~-----------------------------~~pdalR~~~l~~~~~~~ldFd~~~l 317 (515)
T TIGR00467 287 DVLEV-----------------------------YTPEITRFLFARTKPEFHISFDLDVI 317 (515)
T ss_pred HHHHH-----------------------------cCHHHHHHHHhccCCCCCCcCCHHHH
Confidence 99998 69999999999999999999999955
No 55
>PLN02843 isoleucyl-tRNA synthetase
Probab=99.82 E-value=4.1e-18 Score=195.47 Aligned_cols=129 Identities=14% Similarity=0.156 Sum_probs=98.3
Q ss_pred CceEEEEeeCCCCCCCCcccchhhhhHHHHHHHHHHHCCCeEEEeeccCccchHHHHHHHHHHhhCCCCCccCcccHHHH
Q 010356 84 VKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGEL 163 (512)
Q Consensus 84 ~~~v~Ve~~spNp~~~lHvGH~R~~iiGD~lar~l~~~G~~V~~~~~i~D~G~qi~~l~~~~~~~~~~~~~~~~~~i~~l 163 (512)
+++.+|.-.-||+||.+||||++|.++.|+++|+.++.||+|.+....+.+|.++..-+.. +.+.
T Consensus 31 ~~~f~i~~~PPy~nG~lHiGHa~~~~lkDii~Ry~rm~G~~v~~~pG~D~hGlpie~~vek---~l~~------------ 95 (974)
T PLN02843 31 GESFTLHDGPPYANGDLHIGHALNKILKDFINRYQLLQGKKVHYVPGWDCHGLPIELKVLQ---SLDQ------------ 95 (974)
T ss_pred CCCEEEeCCCCCCCCCcchhHHHHHHHHHHHHHHHHhcCCccccCCccCCCCcHHHHHHHH---Hhch------------
Confidence 4668888999999999999999999999999999999999999999999999998743211 1110
Q ss_pred HHHHHHHhcccCCChHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHcCCeEeeec-----cccccCchHH
Q 010356 164 QEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKG-----ESFYNPYIPG 238 (512)
Q Consensus 164 ~~~y~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~L~I~f~~~~-----es~~~~~v~~ 238 (512)
+.... .++ .+.++..+++++.+.+.+++.+++||+..||.. +..|...+.+
T Consensus 96 -----~~~~~--~~~-----------------~~f~~~c~~~~~~~~~~~~~~~~~lG~~~Dw~~~y~T~d~~~~~~v~~ 151 (974)
T PLN02843 96 -----EARKE--LTP-----------------IKLRAKAAKFAKKTVDTQRESFKRYGVWGDWENPYLTLDPEYEAAQIE 151 (974)
T ss_pred -----hhhcc--CCH-----------------HHHHHHHHHHHHHHHHHHHHHHHHhCCceecCCCCccCCHHHHHHHHH
Confidence 00000 111 122344556777788888999999999887643 2356678999
Q ss_pred HHHHHHhCCCeee
Q 010356 239 VIDELSKQGLVEE 251 (512)
Q Consensus 239 ~~~~L~~~g~~~~ 251 (512)
++.+|.++|++|+
T Consensus 152 ~f~~l~~~GlIyr 164 (974)
T PLN02843 152 VFGQMFLNGYIYR 164 (974)
T ss_pred HHHHHHHCCCEEe
Confidence 9999999998885
No 56
>PRK13804 ileS isoleucyl-tRNA synthetase; Provisional
Probab=99.82 E-value=4.2e-18 Score=195.35 Aligned_cols=136 Identities=14% Similarity=0.140 Sum_probs=99.7
Q ss_pred EeEEEECCCCcceeeecCCeecHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhchhhHHHHhhccCCCCCcccc
Q 010356 337 GFGLVLGEDGKRLRTRFSEVVRLVDLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNRLTNYTFS 416 (512)
Q Consensus 337 ~~g~V~~~~g~kmSkR~G~~v~l~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~airy~~L~~~~~~~~~Fd 416 (512)
.+|+|++.+|+|||||+||+|++.+++++ +|+|++||++++..+.+|++|+
T Consensus 619 ~HG~vld~~G~KMSKSlGNvIdP~~ii~~-----------------------------yGaD~lRl~lls~~~~~D~~fs 669 (961)
T PRK13804 619 THGFTLDEKGEKMSKSLGNTVSPQDVIKQ-----------------------------SGADILRLWVASVDYSDDQRIG 669 (961)
T ss_pred EeccEECCCCCCccCCCCCcCCHHHHHHh-----------------------------cCHHHHHHHHHhCCCCCCcccC
Confidence 35889988999999999999999999998 8999999999998889999999
Q ss_pred ccccccccCCchHHHHHHHHHHHHHHHhhcCChhhhhhcCCCCCCCHHHHHHHHHHHhhHHHHHHHHHhcChHHHHHHHH
Q 010356 417 FDQMLNDKGNTAVYLLYAHARICSIIRKSGKDIEELKKTGSLVLDHADERALGLHLLHFSEVIEEALTNLLPNVVCEYLY 496 (512)
Q Consensus 417 ~~~~~~~~~~~g~ylqY~~aR~~sil~k~~~~~~~~~~~~~~~l~~~~e~~L~~~l~~~~~~v~~a~~~~~p~~l~~yl~ 496 (512)
++.+... .+....+.++..++.+.+.+.......++ ...+ .+.++.|+..+.++.+.+.+++++++++.+++.++
T Consensus 670 ~~~l~~~-~~~~~kL~N~~rf~l~nl~~~~~~~~~~~---~~~~-~~~D~wil~~l~~~~~~v~~~~e~y~f~~a~~~l~ 744 (961)
T PRK13804 670 KEILKQV-SETYRKLRNTLRWLLGNLAHFDPGEDVVA---YADL-PELERYMLHRLNELDGLVREAYDAYDFKRIYKALV 744 (961)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHhccccCCcccccCC---hhhc-CHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 9976542 22222344444333222222111100000 0112 34578899999999999999999999999999999
Q ss_pred HHH-HHHhcch
Q 010356 497 NLS-EYFTRFY 506 (512)
Q Consensus 497 ~La-~~fn~fY 506 (512)
+++ ..++++|
T Consensus 745 ~f~~~~lsn~Y 755 (961)
T PRK13804 745 NFVNVDLSAFY 755 (961)
T ss_pred HHHHHHHHHHH
Confidence 998 6776666
No 57
>PRK12558 glutamyl-tRNA synthetase; Provisional
Probab=99.82 E-value=6e-20 Score=191.81 Aligned_cols=241 Identities=16% Similarity=0.163 Sum_probs=174.1
Q ss_pred eeCCCCCCCCcccchhhhhHHHHHHHHHHHCCCeEEEeeccCccchHHHHHHHHHHhhCCCCCccCcccHHHHHHHHHHH
Q 010356 91 FSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQEFYRRS 170 (512)
Q Consensus 91 ~~spNp~~~lHvGH~R~~iiGD~lar~l~~~G~~V~~~~~i~D~G~qi~~l~~~~~~~~~~~~~~~~~~i~~l~~~y~~~ 170 (512)
=-.|.|||+|||||+|++++--..|| .+.-.++--|.|...
T Consensus 6 RFAPSPTG~lHiG~artAL~n~l~Ar-----~~gG~fiLRIEDTD~---------------------------------- 46 (445)
T PRK12558 6 RFAPSPTGYLHVGNARTALLNWLYAR-----KHGGKFILRIDDTDL---------------------------------- 46 (445)
T ss_pred EeCCCCCCcccHHHHHHHHHHHHHHH-----HhCCEEEEEeccCCc----------------------------------
Confidence 45799999999999999986666655 344444444445210
Q ss_pred hcccCCChHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHcCCeEe-eeccccccCchHHHHHHHHhCCCe
Q 010356 171 KNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLE-EKGESFYNPYIPGVIDELSKQGLV 249 (512)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~L~I~f~-~~~es~~~~~v~~~~~~L~~~g~~ 249 (512)
.+..+.+.+.+.++|++|||.+| ++.+|...+.+.+++++|.++|++
T Consensus 47 --------------------------------~Rs~~~~~~~I~e~L~wLGI~~De~y~QSer~~~y~~~~e~L~e~G~A 94 (445)
T PRK12558 47 --------------------------------ERSKQEYADAIAEDLKWLGINWDRTFRQSDRFDRYDEAAEKLKAAGRL 94 (445)
T ss_pred --------------------------------ccchHHHHHHHHHHHHHcCCCCCccccHHHHHHHHHHHHHHHHHCCCE
Confidence 01134556788999999999996 666766556789999999999998
Q ss_pred ee-----------------------eCc--------------------eEEEEec-----------C-------CCCCeE
Q 010356 250 EE-----------------------SQG--------------------ARVIFIE-----------G-------VNIPLI 268 (512)
Q Consensus 250 ~~-----------------------~dG--------------------a~~~~~~-----------g-------~~~d~v 268 (512)
|. .+| ++-++++ | .-.|+|
T Consensus 95 Y~C~Ct~eel~~~r~~~~~~~~~~~y~~~cr~l~~~~~~~~~~~g~~~~iR~k~~~~~~~~~D~i~G~~~~~~~~~~D~V 174 (445)
T PRK12558 95 YPCYETPEELELKRKIQLSRGLPPIYDRAALKLTEEEKAALEAEGRKPHWRFKLDDEPISWDDLIRGEQSIDAASLSDPV 174 (445)
T ss_pred EEecCchHHHHHHHHHHHhCCCCCCCCcccccCCHHHHHhHHhcCCCceEEEecCCCceEEEEEeeeEeecccccCCCeE
Confidence 83 011 1112221 1 125889
Q ss_pred EEecCCccccccchHHHHHHHHhhcCCceEEEEeeCcccchHHHHHHHHHHcCCCCCCCCCCCceEEEEeEEEECCCCcc
Q 010356 269 IVKSDGGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKR 348 (512)
Q Consensus 269 l~ksDG~~~Y~~~DiA~~~~k~~~~~~d~~iyV~g~~q~~hf~~l~~~~~~~g~~~~~~~~~~~~~Hv~~g~V~~~~g~k 348 (512)
|.|+||.|||.. |..++.. ..+.+||| .|.||...-+....+.+++|+. .+.+.|+ .++++++|+|
T Consensus 175 i~R~dg~PtY~f---A~vVDD~-~m~ITHVi--RG~d~l~~t~~q~~l~~alg~~------~P~f~H~--pli~~~~g~K 240 (445)
T PRK12558 175 LIRADGSYLYTL---PSVVDDI-DMGITHII--RGEDHVTNTAVQIQIFEALGAK------PPVFAHL--SLLTGADGKG 240 (445)
T ss_pred EEecCCCccccc---cceeccc-cCCCCEEE--echhhhhCCHHHHHHHHHhCCC------CCeEEEc--ccccCCCccc
Confidence 999999999985 4445554 35778885 9999987777666888999984 4789999 6689899999
Q ss_pred eeeecCCeecHHHHHHHHH--HHHHHHHHHhcCCCCCCHHHHHHHHHhhch-hhHHHHhhccCCCCCccccccccccccC
Q 010356 349 LRTRFSEVVRLVDLLDEAK--NRSKAVLIERGKDKEWTEEELEQTAEAVGY-GAAKYFDLKNNRLTNYTFSFDQMLNDKG 425 (512)
Q Consensus 349 mSkR~G~~v~l~dll~~~~--~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~-~airy~~L~~~~~~~~~Fd~~~~~~~~~ 425 (512)
||||.|. +++.++.+.++ ++..+++..-| |++.+ +++ +.. +.+..|++.+-..++..||.+++..+|+
T Consensus 241 LSKR~g~-~sv~~~r~~G~~Peai~n~la~lG----~s~~~-~e~---~~~~eli~~F~l~~~~~~~~~fd~~KL~w~N~ 311 (445)
T PRK12558 241 LSKRLGG-LSIRSLREDGIEPMAIASLLARLG----TSDPV-EPY---TSMEELAESFDLSSFSRAPAKFDPEDLERLNA 311 (445)
T ss_pred ccccCCC-cCHHHHHHCCCCHHHHHHHHHHHc----CCCCC-ccc---CCHHHHHHhCCHhhCCCccccCCHHHHHHHHH
Confidence 9999996 58999999888 55788887544 33211 011 222 4578899999888999999999999875
No 58
>PTZ00419 valyl-tRNA synthetase-like protein; Provisional
Probab=99.81 E-value=9.3e-18 Score=194.10 Aligned_cols=133 Identities=19% Similarity=0.219 Sum_probs=99.6
Q ss_pred CCceEEEEeeCCCCCCCCcccchhhhhHHHHHHHHHHHCCCeEEEeeccCccchHHHHHHHHHHhhCCCCCccCcccHHH
Q 010356 83 RVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGE 162 (512)
Q Consensus 83 ~~~~v~Ve~~spNp~~~lHvGH~R~~iiGD~lar~l~~~G~~V~~~~~i~D~G~qi~~l~~~~~~~~~~~~~~~~~~i~~ 162 (512)
..++.+|...-|||||.|||||+++.++.|+++|+.|+.|++|.+....+.+|.++...+..-.. .. .+....+
T Consensus 58 ~~~~f~i~~ppP~~~G~lHiGHa~~~~~~D~~~Ry~rm~G~~v~~~~G~D~~Gl~~~~~vE~~l~--~~----~~~~~~~ 131 (995)
T PTZ00419 58 SGKKFVIVLPPPNVTGYLHIGHALTGAIQDSLIRYHRMKGDETLWVPGTDHAGIATQVVVEKKLM--KE----ENKTRHD 131 (995)
T ss_pred CCCeEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHhcCCcccCCCCCCCCchhhHHHHHHHHH--Hh----cCCChHH
Confidence 35678999999999999999999999999999999999999999999999999876533321100 00 0000000
Q ss_pred HHHHHHHHhcccCCChHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHcCCeEeeecc-----ccccCchH
Q 010356 163 LQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKGE-----SFYNPYIP 237 (512)
Q Consensus 163 l~~~y~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~L~I~f~~~~e-----s~~~~~v~ 237 (512)
-|..+.++..+++++.+...+++.+++||+.+||..+ ..|...+.
T Consensus 132 ------------------------------~~~e~f~~~~~~w~~~~~~~~~~~~~~lG~~~DW~~~~~T~d~~~~~~v~ 181 (995)
T PTZ00419 132 ------------------------------LGREEFLKKVWEWKDKHGNNICNQLRRLGSSLDWSREVFTMDEQRSKAVK 181 (995)
T ss_pred ------------------------------cCHHHHHHHHHHHHHHHHHHHHHHHHHhCceeeCCCCcCcCCHHHHHHHH
Confidence 0111233444566888889999999999999998543 34556899
Q ss_pred HHHHHHHhCCCeee
Q 010356 238 GVIDELSKQGLVEE 251 (512)
Q Consensus 238 ~~~~~L~~~g~~~~ 251 (512)
+++.+|.++|++|+
T Consensus 182 ~~F~~l~~~Gliyr 195 (995)
T PTZ00419 182 EAFVRLYEDGLIYR 195 (995)
T ss_pred HHHHHHHHCCCEEe
Confidence 99999999999885
No 59
>TIGR00395 leuS_arch leucyl-tRNA synthetase, archaeal and cytosolic family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both archaeal and cytosolic eukaryotic leucyl-tRNA synthetases; the eubacterial and mitochondrial forms differ so substantially that some other tRNA ligases score higher by this model than does any eubacterial LeuS.
Probab=99.81 E-value=1.7e-17 Score=190.26 Aligned_cols=139 Identities=20% Similarity=0.272 Sum_probs=101.6
Q ss_pred CceEEEEeeCCCCCCCCcccchhhhhHHHHHHHHHHHCCCeEEEeeccCccchHHHHHHHHHHhhCCCCCccCcccHHHH
Q 010356 84 VKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGEL 163 (512)
Q Consensus 84 ~~~v~Ve~~spNp~~~lHvGH~R~~iiGD~lar~l~~~G~~V~~~~~i~D~G~qi~~l~~~~~~~~~~~~~~~~~~i~~l 163 (512)
.++..|...-|||||+||+||+++.++.|+++|+.|++|++|.+....+..|+++...+..+..+.+. . +
T Consensus 24 ~~kf~i~~ppPy~nG~lH~GH~~~~~~~D~~aRy~Rm~G~~vl~p~G~d~~G~pi~~~aek~~~~~~~----~---~--- 93 (938)
T TIGR00395 24 REKFFLTMAYPYLNGVMHAGHCRTFTIPEVSARFERMKGKNVLFPLGFHVTGTPILGLAELIKRRDEL----T---I--- 93 (938)
T ss_pred CCceEEecCCCCCCCCcccchhhhhhHHHHHHHHHHhcCCccCCCCccCCCCCchHHHHHHhhhhhhh----c---c---
Confidence 56799999999999999999999999999999999999999999999999999998765443211000 0 0
Q ss_pred HHHHHHHhcccCCChHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHcCCeEeeecc-----ccccCchHH
Q 010356 164 QEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKGE-----SFYNPYIPG 238 (512)
Q Consensus 164 ~~~y~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~L~I~f~~~~e-----s~~~~~v~~ 238 (512)
+.|.... .. ...+|.+.+ || +.+++.+...+++.+++||+.+||..+ ..|...++.
T Consensus 94 -~~~~~~~-~i-~~~~i~~~~----------~~------~~~~~~~~~~~~~~~~~lG~s~DW~r~~~T~dp~y~~~v~~ 154 (938)
T TIGR00395 94 -KNYTEVH-AI-PREELLKFT----------DP------EYIVEYFSREAESACKSMGYSIDWRRSFKTTDPYYDRFIEW 154 (938)
T ss_pred -ccchhhc-cC-CHHHHHhhc----------CH------HHHHHHHHHHHHHHHHHhCceEECCCCccCCChhHHHHHHH
Confidence 0000000 00 011111111 22 356778888999999999999998643 356678999
Q ss_pred HHHHHHhCCCeee
Q 010356 239 VIDELSKQGLVEE 251 (512)
Q Consensus 239 ~~~~L~~~g~~~~ 251 (512)
++.+|.++|++|.
T Consensus 155 ~f~~L~e~G~iy~ 167 (938)
T TIGR00395 155 QMNKLKELGLIVK 167 (938)
T ss_pred HHHHHHHCCCEec
Confidence 9999999999885
No 60
>PLN02882 aminoacyl-tRNA ligase
Probab=99.81 E-value=1.8e-17 Score=192.39 Aligned_cols=132 Identities=20% Similarity=0.214 Sum_probs=100.6
Q ss_pred CceEEEEeeCCCCCCCCcccchhhhhHHHHHHHHHHHCCCeEEEeeccCccchHHHHHHHHHHhhCCCCCccCcccHHHH
Q 010356 84 VKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGEL 163 (512)
Q Consensus 84 ~~~v~Ve~~spNp~~~lHvGH~R~~iiGD~lar~l~~~G~~V~~~~~i~D~G~qi~~l~~~~~~~~~~~~~~~~~~i~~l 163 (512)
.++.++.-.-||+||++|+||+++.++.|+++|+.++.||+|.+....+.+|.++...+.. ..+-. ..+.|.++
T Consensus 37 ~~~f~~~dgPPyanG~~HiGH~~~~~ikDii~Ry~rm~G~~V~~~~GwD~hGlPiE~~vek---~lgi~---~~~~i~~~ 110 (1159)
T PLN02882 37 LPEYIFYDGPPFATGLPHYGHILAGTIKDIVTRYQSMTGHHVTRRFGWDCHGLPVEYEIDK---KLGIK---RRDDVLKM 110 (1159)
T ss_pred CCCEEEeCCCCCCCCcchhhHHHHHHHHHHHHHHHHcCCCcccccCccCCCCcHHHHHHHH---HcCCC---Cccchhhc
Confidence 4568888999999999999999999999999999999999999999999999998765421 11100 01111110
Q ss_pred HHHHHHHhcccCCChHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHcCCeEeeec-----cccccCchHH
Q 010356 164 QEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKG-----ESFYNPYIPG 238 (512)
Q Consensus 164 ~~~y~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~L~I~f~~~~-----es~~~~~v~~ 238 (512)
|-.+..+.++.++..+.+.+++.+++||+..||.. +..|.+.+..
T Consensus 111 ------------------------------g~~~f~~~c~~~~~~~~~~~~~~~~rlG~~~D~~~~y~T~d~~~~~~v~~ 160 (1159)
T PLN02882 111 ------------------------------GIDKYNEECRSIVTRYSKEWEKTVTRTGRWIDFENDYKTMDPKFMESVWW 160 (1159)
T ss_pred ------------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHcCcEEECCCCcCcCCHHHHHHHHH
Confidence 11122344567788899999999999998887642 2456778999
Q ss_pred HHHHHHhCCCeee
Q 010356 239 VIDELSKQGLVEE 251 (512)
Q Consensus 239 ~~~~L~~~g~~~~ 251 (512)
++.+|.++|++|+
T Consensus 161 ~f~~l~~kGliyr 173 (1159)
T PLN02882 161 VFKQLFEKGLVYK 173 (1159)
T ss_pred HHHHHHHCCCEEe
Confidence 9999999999885
No 61
>TIGR00396 leuS_bact leucyl-tRNA synthetase, eubacterial and mitochondrial family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both eubacterial and mitochondrial leucyl-tRNA synthetases. It generates higher scores for some valyl-tRNA synthetases than for any archaeal or eukaryotic cytosolic leucyl-tRNA synthetase. Note that the enzyme from Aquifex aeolicus is split into alpha and beta chains; neither chain is long enough to score above the trusted cutoff, but the alpha chain scores well above the noise cutoff. The beta chain must be found by a model and search designed for partial length matches.
Probab=99.81 E-value=5.2e-18 Score=192.25 Aligned_cols=120 Identities=9% Similarity=0.107 Sum_probs=87.6
Q ss_pred ceeeecCCeecHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhchhhHHHHhhcc-CCCCCccccccccccccCC
Q 010356 348 RLRTRFSEVVRLVDLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKN-NRLTNYTFSFDQMLNDKGN 426 (512)
Q Consensus 348 kmSkR~G~~v~l~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~airy~~L~~-~~~~~~~Fd~~~~~~~~~~ 426 (512)
|||||+||+|++.|++++ +|+|++|+++++. .+.++++|+.+.+.....
T Consensus 604 KMSKS~GN~v~p~~ii~~-----------------------------ygaDalRl~~l~~~~~~~d~~~~~~~l~~~~~- 653 (842)
T TIGR00396 604 KMSKSKGNGIDPQEIVKK-----------------------------HGADALRLYIMFMGPIAASLEWNDSGLEGARR- 653 (842)
T ss_pred hhhhcCCCcCCHHHHHHH-----------------------------cCchHHHHHHHhcCCcCCCCccCHHHHHHHHH-
Confidence 999999999999999998 7999999999965 678999999887643221
Q ss_pred chHHHHHHHHHHHHHHHhhcCChhhhhhcCCCCCCCHHHHHHHHHHHhhHHHHHHHHHhcC-hHHHHHHHHHHHHHHhcc
Q 010356 427 TAVYLLYAHARICSIIRKSGKDIEELKKTGSLVLDHADERALGLHLLHFSEVIEEALTNLL-PNVVCEYLYNLSEYFTRF 505 (512)
Q Consensus 427 ~g~ylqY~~aR~~sil~k~~~~~~~~~~~~~~~l~~~~e~~L~~~l~~~~~~v~~a~~~~~-p~~l~~yl~~La~~fn~f 505 (512)
.+.|+.++++............+...+ ++.++.|+..+.++...+.++++++. .+.++..++++...++++
T Consensus 654 -------~l~kl~~~~~~~~~~~~~~~~~~~~~l-~~~d~~il~~l~~~i~~v~~~~e~y~~fn~ai~~l~~f~n~L~~~ 725 (842)
T TIGR00396 654 -------FLDRVWNLFYNILGELDGKTYLTPTIL-EEAQKELRRDVHKFLKKVTEDLEKLESFNTAISAMMILLNALYKA 725 (842)
T ss_pred -------HHHHHHHHHHHHHhhhcccccCCcccC-CHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhh
Confidence 234555554432110000000000112 45678899999999999999999988 999999999999887764
No 62
>PLN02381 valyl-tRNA synthetase
Probab=99.80 E-value=1.7e-17 Score=191.43 Aligned_cols=157 Identities=17% Similarity=0.150 Sum_probs=109.6
Q ss_pred CHHHHHHHHHHHHHcCCCCCCC-cCCCceEEEEeeCCCCCCCCcccchhhhhHHHHHHHHHHHCCCeEEEeeccCccchH
Q 010356 59 SKNWMAKNIQKMLVDGIETWAP-KLRVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQ 137 (512)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~Ve~~spNp~~~lHvGH~R~~iiGD~lar~l~~~G~~V~~~~~i~D~G~q 137 (512)
++..+.....+..++....... ....++..|...-||+||+|||||+++.++.|+++|+.|+.||+|.+....+.+|.+
T Consensus 101 d~~~iE~~w~~~W~~~~~f~~~~~~~~~~f~i~~ppPy~nG~lHiGHa~~~ti~Dii~Ry~rm~G~~vl~~~G~D~~Glp 180 (1066)
T PLN02381 101 SPSAVEKSWYAWWEKSGYFGADAKSSKPPFVIVLPPPNVTGALHIGHALTAAIEDTIIRWKRMSGYNALWVPGVDHAGIA 180 (1066)
T ss_pred CHHHHHHHHHHHHHHCCCccCCccCCCCcEEEEeCCCCCCCCccHHHHHHHHHHHHHHHHHHhCCCcccccCCCCCCcCh
Confidence 4445555555555443321111 123466889999999999999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHhhCCCCCccCcccHHHHHHHHHHHhcccCCChHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHH
Q 010356 138 FGMLIEYLFEKFPNSEDANETAIGELQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVY 217 (512)
Q Consensus 138 i~~l~~~~~~~~~~~~~~~~~~i~~l~~~y~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~ 217 (512)
+...+..- .... .+....+ -|..+.++..+++++.+...+++.+
T Consensus 181 ~e~~vek~---l~~~---~~~~~~~------------------------------~~re~f~~~~~~~~~~~~~~~~~q~ 224 (1066)
T PLN02381 181 TQVVVEKK---LMRE---RHLTRHD------------------------------IGREEFVSEVWKWKDEYGGTILNQL 224 (1066)
T ss_pred HHHHHHHH---hHhh---cCCChhh------------------------------CCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 86443210 0000 0000000 0111223344566888889999999
Q ss_pred HHcCCeEeeecc-----ccccCchHHHHHHHHhCCCeee
Q 010356 218 KRLRVDLEEKGE-----SFYNPYIPGVIDELSKQGLVEE 251 (512)
Q Consensus 218 ~~L~I~f~~~~e-----s~~~~~v~~~~~~L~~~g~~~~ 251 (512)
++||+.+||..+ ..|...+.+++.+|.++|++|+
T Consensus 225 ~~lG~s~Dw~~~~~T~d~~~~~~v~~~F~~L~~~GlIyr 263 (1066)
T PLN02381 225 RRLGASLDWSRECFTMDEQRSKAVTEAFVRLYKEGLIYR 263 (1066)
T ss_pred HHhCchhccCCccccCCHHHHHHHHHHHHHHHHCCCEEe
Confidence 999999998543 3456789999999999999985
No 63
>PRK00390 leuS leucyl-tRNA synthetase; Validated
Probab=99.79 E-value=2.3e-17 Score=186.60 Aligned_cols=125 Identities=14% Similarity=0.178 Sum_probs=95.4
Q ss_pred ceEEEEeEEEECCCCcceeeecCCeecHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhchhhHHHHhhcc-CCC
Q 010356 332 KASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKN-NRL 410 (512)
Q Consensus 332 ~~~Hv~~g~V~~~~g~kmSkR~G~~v~l~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~airy~~L~~-~~~ 410 (512)
.+.|. ||| |||||+||+|++.|++++ +|+|++|+++++. ++.
T Consensus 562 ~v~~~--G~v------KMSKS~GN~i~p~~~i~~-----------------------------ygaD~lRl~l~~~~~~~ 604 (805)
T PRK00390 562 KLLTQ--GMV------KMSKSKGNVVDPDDIIEK-----------------------------YGADTARLFEMFAGPPE 604 (805)
T ss_pred hheec--CcE------EeCCCCCCCCCHHHHHHH-----------------------------cChHHHHHHHHhcCCcc
Confidence 45555 777 899999999999999998 8999999999985 689
Q ss_pred CCccccccccccccCCchHHHHHHHHHHHHHHHhhcCChhhhhhcCCCCCCCHHHHHHHHHHHhhHHHHHHHHHhcChHH
Q 010356 411 TNYTFSFDQMLNDKGNTAVYLLYAHARICSIIRKSGKDIEELKKTGSLVLDHADERALGLHLLHFSEVIEEALTNLLPNV 490 (512)
Q Consensus 411 ~~~~Fd~~~~~~~~~~~g~ylqY~~aR~~sil~k~~~~~~~~~~~~~~~l~~~~e~~L~~~l~~~~~~v~~a~~~~~p~~ 490 (512)
++++|+.+.+.... -.+.|+.+.++........ .+ ... .+.++.|+..+.++...+.+++++++.+.
T Consensus 605 ~d~~~s~~~l~~~~--------~~l~kl~~~~~~~~~~~~~---~~-~~~-~~~D~~il~~l~~~i~~v~~~~e~~~f~~ 671 (805)
T PRK00390 605 KDLEWSDSGVEGAY--------RFLQRVWRLVVDAKGEAGA---LD-VAA-LSEDKELRRKLHKTIKKVTEDIERLRFNT 671 (805)
T ss_pred CCcccCHHHHHHHH--------HHHHHHHHHHHHhhhcccc---cC-ccc-ChhhHHHHHHHHHHHHHHHHHHHcCCHHH
Confidence 99999988764321 2234555555542111100 00 111 34568899999999999999999999999
Q ss_pred HHHHHHHHHHHHhcch
Q 010356 491 VCEYLYNLSEYFTRFY 506 (512)
Q Consensus 491 l~~yl~~La~~fn~fY 506 (512)
++..++++...+++||
T Consensus 672 ai~~l~~f~n~lsk~~ 687 (805)
T PRK00390 672 AIAALMELVNALYKAE 687 (805)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999999987
No 64
>PTZ00427 isoleucine-tRNA ligase, putative; Provisional
Probab=99.77 E-value=2.9e-16 Score=181.90 Aligned_cols=157 Identities=19% Similarity=0.102 Sum_probs=110.2
Q ss_pred CHHHHHHHHHHHHHcCCCCCCCc---CCCceEEEEeeCCCCCCCCcccchhhhhHHHHHHHHHHHCCCeEEEeeccCccc
Q 010356 59 SKNWMAKNIQKMLVDGIETWAPK---LRVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWG 135 (512)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~v~Ve~~spNp~~~lHvGH~R~~iiGD~lar~l~~~G~~V~~~~~i~D~G 135 (512)
+.......+.+..++...+.... ..+++.++.-.-||+||.+|+||+++.++.|+++|+.++.||+|.+....+.+|
T Consensus 73 ~~~~~E~~~~~~W~e~~~f~~~~~~~~~~~~Fv~~~gPPyanG~lHiGHal~~tikDii~Ry~rm~G~~V~~~~GwD~hG 152 (1205)
T PTZ00427 73 NIVEEEEKVLKYWKSIDAFNTSNKLAKNKKAYIFYDGPPFATGLPHYGHLLAGIIKDCVTRYFYQCGFSVERKFGWDCHG 152 (1205)
T ss_pred CHHHHHHHHHHHHHhCCCcccCccccCCCCcEEEecCCCCCCCCcchhHHHHHHHHHHHHHHHHcCCCeeccCCccCCCC
Confidence 44455555655655443211111 224568888999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhhCCCCCccCcccHHHHHHHHHHHhcccCCChHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHH
Q 010356 136 TQFGMLIEYLFEKFPNSEDANETAIGELQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDK 215 (512)
Q Consensus 136 ~qi~~l~~~~~~~~~~~~~~~~~~i~~l~~~y~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~ 215 (512)
.++...+.. +++-. ....+.+ + |-.+..+.+++++..+.+.+++
T Consensus 153 lPiE~~vEk---~lg~~---~k~~i~~-----------~-------------------g~~~f~e~c~~~~~~~~~~~~~ 196 (1205)
T PTZ00427 153 LPIEYEIEK---ENNIN---KKEDILK-----------M-------------------GIDVYNEKCRGIVLKYSNEWVK 196 (1205)
T ss_pred cHHHHHHHH---HhCCC---cccchhh-----------c-------------------CHHHHHHHHHHHHHHHHHHHHH
Confidence 999855422 11100 0011110 0 1112233456678888899999
Q ss_pred HHHHcCCeEeeec-----cccccCchHHHHHHHHhCCCeee
Q 010356 216 VYKRLRVDLEEKG-----ESFYNPYIPGVIDELSKQGLVEE 251 (512)
Q Consensus 216 ~~~~L~I~f~~~~-----es~~~~~v~~~~~~L~~~g~~~~ 251 (512)
.+++||+..||.. +..|.+.+..++.+|.++|++|+
T Consensus 197 ~~~rlG~~iDw~~~y~T~d~~~~~~v~~~f~~L~ekGlIYr 237 (1205)
T PTZ00427 197 TVERIGRWIDFKNDYKTMDKTFMESVWWVFSELYKNNYVYK 237 (1205)
T ss_pred HHHHhCcEEecCCCcCcCCHHHHHHHHHHHHHHHHCCCEEe
Confidence 9999998877643 34567789999999999998884
No 65
>COG0495 LeuS Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.77 E-value=1.1e-16 Score=176.69 Aligned_cols=114 Identities=25% Similarity=0.278 Sum_probs=96.0
Q ss_pred ceEEEEeeCCCCCCCCcccchhhhhHHHHHHHHHHHCCCeEEEeeccCccchHHHHHHHHHHhhCCCCCccCcccHHHHH
Q 010356 85 KKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQ 164 (512)
Q Consensus 85 ~~v~Ve~~spNp~~~lHvGH~R~~iiGD~lar~l~~~G~~V~~~~~i~D~G~qi~~l~~~~~~~~~~~~~~~~~~i~~l~ 164 (512)
+|..|-..=|.|+|.|||||+|++++||++||+.|+.||+|..-...+=+|.++...|...
T Consensus 34 ~Kfyvl~mfPYpSG~LHvGH~r~Yti~Dv~aRykRm~GyNVL~PMGwdafGlPae~~A~~~------------------- 94 (814)
T COG0495 34 EKFYVLVMFPYPSGALHVGHVRNYTIGDVIARYKRMQGYNVLHPMGWDAFGLPAENAAIKI------------------- 94 (814)
T ss_pred CceEEEeCCCCCCCCcccCccccccHHHHHHHHHHhcCCeecccCcccccCchHHHHHHHh-------------------
Confidence 5788888999999999999999999999999999999999999999988888775433111
Q ss_pred HHHHHHhcccCCChHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHcCCeEeeecc-----ccccCchHHH
Q 010356 165 EFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKGE-----SFYNPYIPGV 239 (512)
Q Consensus 165 ~~y~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~L~I~f~~~~e-----s~~~~~v~~~ 239 (512)
..+| +.+++...+.+++.+++||.++||..| ..|...++.+
T Consensus 95 ----------~~~P------------------------~~wt~~ni~~~k~qlk~lG~siDW~Ref~T~Dp~Yyk~~QW~ 140 (814)
T COG0495 95 ----------GTDP------------------------AKWTYYNIAYMKKQLKSLGFSIDWRREFATCDPEYYKWIQWQ 140 (814)
T ss_pred ----------CCCh------------------------HHHHHHHHHHHHHHHHHhCCccccccceecCCccHHHHHHHH
Confidence 1233 345778889999999999999999755 3677889999
Q ss_pred HHHHHhCCCeee
Q 010356 240 IDELSKQGLVEE 251 (512)
Q Consensus 240 ~~~L~~~g~~~~ 251 (512)
+.+|.++|++|.
T Consensus 141 F~kL~ekGL~y~ 152 (814)
T COG0495 141 FLKLYEKGLAYR 152 (814)
T ss_pred HHHHHHCCCEEe
Confidence 999999999986
No 66
>PLN02563 aminoacyl-tRNA ligase
Probab=99.75 E-value=2.1e-16 Score=179.97 Aligned_cols=140 Identities=19% Similarity=0.142 Sum_probs=96.3
Q ss_pred CHHHHHHHHHHHHHcCCCCCCC---cCCCceEEEEeeCCCCCCC-CcccchhhhhHHHHHHHHHHHCCCeEEEeeccCcc
Q 010356 59 SKNWMAKNIQKMLVDGIETWAP---KLRVKKAVVDFSSPNIAKE-MHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDW 134 (512)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~v~Ve~~spNp~~~-lHvGH~R~~iiGD~lar~l~~~G~~V~~~~~i~D~ 134 (512)
++..+.....+..++...+... ....++..|--.=|+|+|. |||||+|+.+++|+++|+.|+.||+|.+....+.+
T Consensus 81 ~~~~iE~kwq~~W~e~~~f~~~~~~~~~k~k~~v~~~~PYpnG~~lHiGH~~~y~~~DviaRy~Rm~G~~Vl~~~G~D~~ 160 (963)
T PLN02563 81 PFHEIEPKWQRYWEENRTFRTPDDVDTSKPKFYVLDMFPYPSGAGLHVGHPEGYTATDILARYKRMQGYNVLHPMGWDAF 160 (963)
T ss_pred CHHHHHHHHHHHHHhCCCccccccccCCCCCEEEEeCCCCCCCcccchhhHHHHHHHHHHHHHHHhcCCeeccccccccc
Confidence 3445555555555443321111 1123344444445999996 99999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHhhCCCCCccCcccHHHHHHHHHHHhcccCCChHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHH
Q 010356 135 GTQFGMLIEYLFEKFPNSEDANETAIGELQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFD 214 (512)
Q Consensus 135 G~qi~~l~~~~~~~~~~~~~~~~~~i~~l~~~y~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~w~~~~~~~~~~~~ 214 (512)
|.++...+.. . +..| +..++.....++
T Consensus 161 GlPiE~~a~~-----------~------------------g~~p------------------------~~~~~~~i~~~~ 187 (963)
T PLN02563 161 GLPAEQYAIE-----------T------------------GTHP------------------------KITTLKNIARFR 187 (963)
T ss_pred CcHHHHHHHH-----------c------------------CCCh------------------------HHhHHHHHHHHH
Confidence 9988643210 0 0111 122455667788
Q ss_pred HHHHHcCCeEeeecc-----ccccCchHHHHHHHHhCCCeee
Q 010356 215 KVYKRLRVDLEEKGE-----SFYNPYIPGVIDELSKQGLVEE 251 (512)
Q Consensus 215 ~~~~~L~I~f~~~~e-----s~~~~~v~~~~~~L~~~g~~~~ 251 (512)
+.+++||+.+||..+ ..|...++.++.+|.++|++|+
T Consensus 188 ~q~~~lG~s~DW~r~~~T~dp~y~~~~q~~F~~L~~~GliY~ 229 (963)
T PLN02563 188 SQLKSLGFSYDWDREISTTEPEYYKWTQWIFLQLLKRGLAYQ 229 (963)
T ss_pred HHHHHhCcEeeCCCCeecCCHHHHHHHHHHHHHHHHCCCEEe
Confidence 888999999887432 3566778888999999998875
No 67
>PLN02627 glutamyl-tRNA synthetase
Probab=99.75 E-value=4.5e-18 Score=179.90 Aligned_cols=247 Identities=18% Similarity=0.174 Sum_probs=168.6
Q ss_pred ceEEEEeeCCCCCCCCcccchhhhhHHHHHHHHHHHCCCeEEEeeccCccchHHHHHHHHHHhhCCCCCccCcccHHHHH
Q 010356 85 KKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQ 164 (512)
Q Consensus 85 ~~v~Ve~~spNp~~~lHvGH~R~~iiGD~lar~l~~~G~~V~~~~~i~D~G~qi~~l~~~~~~~~~~~~~~~~~~i~~l~ 164 (512)
.+|.+ =-.|.|||+|||||+|++++....|| ++-|-=+.| |.|...
T Consensus 44 ~~vr~-RFAPSPTG~LHiG~aRtAL~n~l~Ar--~~gG~fiLR---IEDTD~---------------------------- 89 (535)
T PLN02627 44 GPVRV-RFAPSPTGNLHVGGARTALFNYLFAR--SKGGKFVLR---IEDTDL---------------------------- 89 (535)
T ss_pred CceEE-EeCCCCCCCccHHHHHHHHHHHHHHH--HhCCEEEEE---eCcCCC----------------------------
Confidence 45666 55689999999999999999999998 445655555 333110
Q ss_pred HHHHHHhcccCCChHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHcCCeEeee----------ccccccC
Q 010356 165 EFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEK----------GESFYNP 234 (512)
Q Consensus 165 ~~y~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~L~I~f~~~----------~es~~~~ 234 (512)
.+.+..+.+.+.++++.||+..|.- ..|.+.+
T Consensus 90 --------------------------------------~R~~~e~~~~I~~~L~WLGl~wDegp~~gg~~gpy~QSeR~~ 131 (535)
T PLN02627 90 --------------------------------------ARSTKESEEAVLRDLKWLGLDWDEGPDVGGEYGPYRQSERNA 131 (535)
T ss_pred --------------------------------------CCCChHHHHHHHHHHHHcCCCCCcCcccCCCCCCeeeeccHH
Confidence 0011223355667888888877632 1233334
Q ss_pred chHHHHHHHHhCCCeee----------------e-------Cc--------------------eEEEEec----------
Q 010356 235 YIPGVIDELSKQGLVEE----------------S-------QG--------------------ARVIFIE---------- 261 (512)
Q Consensus 235 ~v~~~~~~L~~~g~~~~----------------~-------dG--------------------a~~~~~~---------- 261 (512)
.-.+++++|.++|.+|. . +| ++-|++.
T Consensus 132 ~Y~~~a~~Li~~G~AY~CfCs~eel~~~r~~~~~~~~~~~Yd~~cr~l~~ee~~~~~~~g~~~~iR~k~p~~~~~~~~D~ 211 (535)
T PLN02627 132 IYKQYAEKLLESGHVYPCFCTDEELEAMKEEAELKKLPPRYTGKWATASDEEVQAELAKGTPYTYRFRVPKEGSVKIDDL 211 (535)
T ss_pred HHHHHHHHHHHcCCeeeccCChHHHHHHHHHHHhcCCCcCCCCccccCCHHHHHHHHhCCCCceEEEEcCCCCceEEEee
Confidence 55678888888887772 0 00 1111111
Q ss_pred --C-------CCCCeEEEecCCccccccchHHHHHHHHhhcCCceEEEEeeCcccchHHHHHHHHHHcCCCCCCCCCCCc
Q 010356 262 --G-------VNIPLIIVKSDGGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPK 332 (512)
Q Consensus 262 --g-------~~~d~vl~ksDG~~~Y~~~DiA~~~~k~~~~~~d~~iyV~g~~q~~hf~~l~~~~~~~g~~~~~~~~~~~ 332 (512)
| .-.|.||.|+||.|||.. |..++.. ..+.+||| .|.||...-++...+.+++|+. .+.
T Consensus 212 i~G~i~~~~~~~~D~Vi~R~DG~PtY~f---A~vVDD~-~mgITHVi--RG~D~l~nTpkQi~ly~aLg~~------~P~ 279 (535)
T PLN02627 212 IRGEVSWNTDTLGDFVLLRSNGQPVYNF---CVAVDDA-TMGITHVI--RAEEHLPNTLRQALIYKALGFP------MPR 279 (535)
T ss_pred eeeeeeeccccCCCeEEEecCCCccccc---cceeccc-ccCCcEEE--echhhhcChHHHHHHHHHcCCC------CCe
Confidence 1 125899999999999985 4445554 35778884 9999987777666888999995 367
Q ss_pred eEEEEeEEEECCCCcceeeecCCeecHHHHHHHHH--HHHHHHHHHhcCCCCCCHHHHHHHHHhhc-hhhHHHHhhccCC
Q 010356 333 ASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAK--NRSKAVLIERGKDKEWTEEELEQTAEAVG-YGAAKYFDLKNNR 409 (512)
Q Consensus 333 ~~Hv~~g~V~~~~g~kmSkR~G~~v~l~dll~~~~--~~~~~~~~~~~~~~~~~~~~~~~~a~~~~-~~airy~~L~~~~ 409 (512)
+.|+ .+|++++|+|||||+|. +++.++.+.++ ++..+++.. .+|++.+-.++ +. .+.+..|++..-.
T Consensus 280 f~Hl--pli~~~~g~KLSKR~~~-~~v~~~r~~G~~PeAi~nyla~----LGws~~~~~e~---~~~~eli~~F~l~~v~ 349 (535)
T PLN02627 280 FAHV--SLILAPDRSKLSKRHGA-TSVGQFREMGYLPDAMVNYLAL----LGWNDGTENEI---FTLEELVEKFSIDRIN 349 (535)
T ss_pred EEEc--cceeCCCCCccccccCC-ccHHHHHHCCCCHHHHHHHHHH----hCCCCCCCCCc---CCHHHHHHhCCHhhCC
Confidence 8999 56888999999999985 58999999887 456777764 33432110011 22 2457889999888
Q ss_pred CCCccccccccccccC
Q 010356 410 LTNYTFSFDQMLNDKG 425 (512)
Q Consensus 410 ~~~~~Fd~~~~~~~~~ 425 (512)
.++..||.+++.++|+
T Consensus 350 ~s~~~fD~~KL~wlN~ 365 (535)
T PLN02627 350 KSGAVFDSTKLKWMNG 365 (535)
T ss_pred CcccccCHHHHHHHHH
Confidence 9999999999999875
No 68
>PRK12410 glutamylglutaminyl-tRNA synthetase; Provisional
Probab=99.74 E-value=2.3e-17 Score=171.69 Aligned_cols=239 Identities=17% Similarity=0.202 Sum_probs=165.3
Q ss_pred CCCCCCCCcccchhhhhHHHHHHHHHHHCCCeEEEeeccCccchHHHHHHHHHHhhCCCCCccCcccHHHHHHHHHHHhc
Q 010356 93 SPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQEFYRRSKN 172 (512)
Q Consensus 93 spNp~~~lHvGH~R~~iiGD~lar~l~~~G~~V~~~~~i~D~G~qi~~l~~~~~~~~~~~~~~~~~~i~~l~~~y~~~~~ 172 (512)
.|+|||+|||||+|++++--.+||-. -|-=+.| |.|...
T Consensus 5 APSPTG~LHiG~artAL~n~l~Ar~~--gG~fiLR---iEDTD~------------------------------------ 43 (433)
T PRK12410 5 APSPTGDMHIGNLRAAIFNYIVAKQQ--NEDFLIR---IEDTDK------------------------------------ 43 (433)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHHHc--CCEEEEE---eCcCCC------------------------------------
Confidence 59999999999999999999988853 4554555 233110
Q ss_pred ccCCChHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHcCCeEee-eccccccCchHHHHHHHHhCCCeee
Q 010356 173 RFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEE-KGESFYNPYIPGVIDELSKQGLVEE 251 (512)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~L~I~f~~-~~es~~~~~v~~~~~~L~~~g~~~~ 251 (512)
.+....+.+.+.++++.||+..|. +..|.+.+.-.+++++|.++|.+|.
T Consensus 44 ------------------------------~R~~~e~~~~I~~~L~WlGl~wDe~y~QSeR~~~Y~~~a~~Li~~G~AY~ 93 (433)
T PRK12410 44 ------------------------------ERNIEGKDKEILEILNLFGISWDKLVYQSENLKFHRQMAEKLLSEKKAFA 93 (433)
T ss_pred ------------------------------CcCChHHHHHHHHHHHHcCCCCCCCeehhccHHHHHHHHHHHHHcCCeee
Confidence 001122335567788888888752 2234444556678888888887772
Q ss_pred ------------e----Cc----------------------eEEEEec-------------C-------CCCCeEEEecC
Q 010356 252 ------------S----QG----------------------ARVIFIE-------------G-------VNIPLIIVKSD 273 (512)
Q Consensus 252 ------------~----dG----------------------a~~~~~~-------------g-------~~~d~vl~ksD 273 (512)
. .| ..++++. | .-.|+||.|+|
T Consensus 94 C~cs~eel~~~r~~~~~~g~~~~Y~g~cr~l~~~e~~~~g~~~~iR~k~p~~~~~f~D~v~G~i~~~~~~~~D~Vi~R~D 173 (433)
T PRK12410 94 CFCSEEELEAKKEKAKNEKKPYRYDGTCENLEDDEVLNCNKPFVVRLKKPNHTMSFTDAIKGEVSFEPDEIDSFVILRAD 173 (433)
T ss_pred ecCCHHHHHHHHHHHhhcCCCCCCCchhhCCCHhHHHhcCCCeEEEEEcCCCceeeeeccceeEEeccccCCCeEEEcCC
Confidence 0 01 1122221 1 12478999999
Q ss_pred CccccccchHHHHHHHHhhcCCceEEEEeeCcccchHHHHHHHHHHcCCCCCCCCCCCceEEEEeEEEECCCCcceeeec
Q 010356 274 GGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRF 353 (512)
Q Consensus 274 G~~~Y~~~DiA~~~~k~~~~~~d~~iyV~g~~q~~hf~~l~~~~~~~g~~~~~~~~~~~~~Hv~~g~V~~~~g~kmSkR~ 353 (512)
|.|||.. |...+.. ..+.+||| .|.||...-+....+.+++|+.+ ++.+.|+ .++.+.+|+|||||+
T Consensus 174 g~PtY~f---A~vVDD~-~mgIThVi--RG~d~l~~tp~Qi~Ly~aLg~~~-----pp~f~Hl--pli~~~~g~KLSKR~ 240 (433)
T PRK12410 174 KTPTYNF---ACAVDDM-LYDISLII--RGEDHVSNTPKQILIREALGYNK-----EITYAHL--PIILNEEGKKMSKRD 240 (433)
T ss_pred CCccccc---cchhchh-hcCCCEEE--echhhhhCcHHHHHHHHHcCCCC-----CCeEEEe--eeeeCCCCCeeeccc
Confidence 9999985 4445655 36788884 99999877666668889999942 3578999 568889999999999
Q ss_pred CCeecHHHHHHHHH--HHHHHHHHHhcCCCCCCHHHHHHHHHhhc-hhhHHHHhhccCCCCCccccccccccccC
Q 010356 354 SEVVRLVDLLDEAK--NRSKAVLIERGKDKEWTEEELEQTAEAVG-YGAAKYFDLKNNRLTNYTFSFDQMLNDKG 425 (512)
Q Consensus 354 G~~v~l~dll~~~~--~~~~~~~~~~~~~~~~~~~~~~~~a~~~~-~~airy~~L~~~~~~~~~Fd~~~~~~~~~ 425 (512)
|. .++.++.+.++ ++..+++..-|...+ +|+ +. .+.+..|.+.....++..||++++..+|+
T Consensus 241 ~~-~~v~~~r~~G~~PeAi~n~l~~lG~~~~---~e~------~~~~eli~~F~~~~i~~~~~~~d~~kL~~~N~ 305 (433)
T PRK12410 241 NA-SSVKWLLEQGFLPSAIANYLILLGNKTP---KEI------FTLEEAIEWFDIEKISKSPAKFDLKKLRFINR 305 (433)
T ss_pred Ch-hhHHHHHHCCCCHHHHHHHHHHhCCCCc---ccc------cCHHHHHHhCCHhhCCCccccCCHHHHHHHHH
Confidence 95 48999999887 456777775442211 221 22 24577899998889999999999998875
No 69
>PF00133 tRNA-synt_1: tRNA synthetases class I (I, L, M and V); InterPro: IPR002300 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1OBC_A 2AJH_B 4ARI_A 2AJG_B 4AQ7_D 2AJI_B 4ARC_A 4AS1_A 1QU3_A 1QU2_A ....
Probab=99.74 E-value=4e-17 Score=179.65 Aligned_cols=133 Identities=21% Similarity=0.290 Sum_probs=94.3
Q ss_pred CCceEEEEeeCCCCCCCCcccchhhhhHHHHHHHHHHHCCCeEEEeeccCccchHHHHHHHHHHhhCCCCCccCcccHHH
Q 010356 83 RVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGE 162 (512)
Q Consensus 83 ~~~~v~Ve~~spNp~~~lHvGH~R~~iiGD~lar~l~~~G~~V~~~~~i~D~G~qi~~l~~~~~~~~~~~~~~~~~~i~~ 162 (512)
+.++..|-..-||+||+||+||++|.++.|+++|+.++.||+|.+....+-+|.++...+.. .++... +.
T Consensus 21 ~~~~f~i~~~PPy~nG~lH~GH~~~~~~~D~i~Ry~rm~G~~v~~~~G~D~~Glpie~~vek---~l~~~~---~~---- 90 (601)
T PF00133_consen 21 NKPKFFIHDPPPYANGDLHIGHALNKTIKDIIARYKRMQGYNVLFPPGWDCHGLPIEAKVEK---KLGIKE---KK---- 90 (601)
T ss_dssp TSGEEEEEE---BTSSS-BHHHHHHHHHHHHHHHHHHCTTSEEEEEEEEB--SHHHHHHHHH---HTTTTS---HH----
T ss_pred CCCcEEEEeCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCcEeCCCCCcCCCCcchhhhHHH---hhcccc---cc----
Confidence 36778888999999999999999999999999999999999999999999999999765422 122110 00
Q ss_pred HHHHHHHHhcccCCChHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHcCCeEeeecc-----ccccCchH
Q 010356 163 LQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKGE-----SFYNPYIP 237 (512)
Q Consensus 163 l~~~y~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~L~I~f~~~~e-----s~~~~~v~ 237 (512)
....+ |.++.++..+++++.+.+.+++.+++||+.+||..+ ..|...+.
T Consensus 91 -------~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~Dw~~~y~T~d~~y~~~v~ 144 (601)
T PF00133_consen 91 -------DRKDL-------------------GREEFREECREWAEEFIEEQKEQFKRLGVSIDWDREYFTMDPEYEKFVW 144 (601)
T ss_dssp -------HCSCS-------------------THHHHHHHHHHHHHHHHHHHHHHHHHTT--SECTCEEETTSHHHHHHHH
T ss_pred -------ccccc-------------------ccccchhhhcchhhhhhhhhhhhhhheeeecccCCceEECCccHhHHHH
Confidence 00000 112233444567888899999999999999987533 34667899
Q ss_pred HHHHHHHhCCCeee
Q 010356 238 GVIDELSKQGLVEE 251 (512)
Q Consensus 238 ~~~~~L~~~g~~~~ 251 (512)
+++.+|.++|++|.
T Consensus 145 ~~F~~l~~kglIyr 158 (601)
T PF00133_consen 145 WQFKKLYEKGLIYR 158 (601)
T ss_dssp HHHHHHHHTTSEEE
T ss_pred HHHHHHHhcCcEEe
Confidence 99999999999885
No 70
>COG0060 IleS Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.72 E-value=5.6e-16 Score=172.57 Aligned_cols=131 Identities=20% Similarity=0.244 Sum_probs=100.5
Q ss_pred EeEEEECCCCcceeeecCCeecHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhchhhHHHHhhccCCCCCcccc
Q 010356 337 GFGLVLGEDGKRLRTRFSEVVRLVDLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNRLTNYTFS 416 (512)
Q Consensus 337 ~~g~V~~~~g~kmSkR~G~~v~l~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~airy~~L~~~~~~~~~Fd 416 (512)
.+|++++++|+|||||.||+|++.|++++ +|+|++|++.++..+..++.|+
T Consensus 591 tHGfvlDe~GrKMSKSlGN~v~P~~V~~~-----------------------------yGADiLRLwv~ssd~~~dl~~s 641 (933)
T COG0060 591 THGFVLDEKGRKMSKSLGNVVDPQDVIDK-----------------------------YGADILRLWVASSDYWEDLRFS 641 (933)
T ss_pred hcccEECCCCCCccccCCCcCCHHHHHHh-----------------------------hCchheeeeeeecCchhccccC
Confidence 45899999999999999999999999998 8999999999999999999999
Q ss_pred ccccccccCCchHHHHHHHHHHHHHHHhh-----cCChhhhhhcCCCCCCCHHHHHHHHHHHhhHHHHHHHHHhcChHHH
Q 010356 417 FDQMLNDKGNTAVYLLYAHARICSIIRKS-----GKDIEELKKTGSLVLDHADERALGLHLLHFSEVIEEALTNLLPNVV 491 (512)
Q Consensus 417 ~~~~~~~~~~~g~ylqY~~aR~~sil~k~-----~~~~~~~~~~~~~~l~~~~e~~L~~~l~~~~~~v~~a~~~~~p~~l 491 (512)
++.+.... + ++.|+...+|=+ +.++.. .......+ .+.++.++.++..+...+.+++++|+.|.+
T Consensus 642 ~~il~~~~-~-------~~r~irNt~rF~l~nl~~fdp~~-~~~~~~~~-~~~Drwil~rl~~l~~~v~eaye~y~f~~v 711 (933)
T COG0060 642 DEILKQVR-E-------VYRKIRNTYRFLLGNLDDFDPKK-DAVLPEEL-RELDRWILSRLNSLVKEVREAYENYDFHKV 711 (933)
T ss_pred HHHHHHHH-H-------HHHHHHHHHHHHHHhccCCCccc-cccchhhc-chhHHHHHHHHHHHHHHHHHHHHhcCHHHH
Confidence 99843322 1 222333322221 111110 00000112 356788999999999999999999999999
Q ss_pred HHHHHHHH-HHHhcch
Q 010356 492 CEYLYNLS-EYFTRFY 506 (512)
Q Consensus 492 ~~yl~~La-~~fn~fY 506 (512)
++.|++++ ..+++||
T Consensus 712 ~~~l~~F~~~dLS~~Y 727 (933)
T COG0060 712 VRALMNFVSEDLSNWY 727 (933)
T ss_pred HHHHHHHHHhhhhHHH
Confidence 99999999 9999999
No 71
>cd00808 GluRS_core catalytic core domain of discriminating glutamyl-tRNA synthetase. Discriminating Glutamyl-tRNA synthetase (GluRS) catalytic core domain . The discriminating form of GluRS is only found in bacteria and cellular organelles. GluRS is a monomer that attaches Glu to the appropriate tRNA. Like other class I tRNA synthetases, GluRS aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=99.71 E-value=1e-16 Score=155.05 Aligned_cols=216 Identities=19% Similarity=0.161 Sum_probs=149.8
Q ss_pred eeCCCCCCCCcccchhhhhHHHHHHHHHHHCCCeEEEeeccCccchHHHHHHHHHHhhCCCCCccCcccHHHHHHHHHHH
Q 010356 91 FSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQEFYRRS 170 (512)
Q Consensus 91 ~~spNp~~~lHvGH~R~~iiGD~lar~l~~~G~~V~~~~~i~D~G~qi~~l~~~~~~~~~~~~~~~~~~i~~l~~~y~~~ 170 (512)
=-.|+|||+||+||+|++++....||- ..| ...--|.|... . .
T Consensus 5 RfAPsPtG~LHlG~~~~al~n~l~ar~--~~G---~~ilRieDtd~---------------------~--r--------- 47 (239)
T cd00808 5 RFAPSPTGFLHIGGARTALFNYLFARK--HGG---KFILRIEDTDQ---------------------E--R--------- 47 (239)
T ss_pred EeCCCCCCcccHHHHHHHHHHHHHHHH--cCC---eEEEEECcCCC---------------------C--C---------
Confidence 347999999999999999999999985 344 33333444110 0 0
Q ss_pred hcccCCChHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHcCCeEee----------eccccccCchHHHH
Q 010356 171 KNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEE----------KGESFYNPYIPGVI 240 (512)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~L~I~f~~----------~~es~~~~~v~~~~ 240 (512)
. ...+.+.+.++++.||+..|. +..|...+...+++
T Consensus 48 -----~-----------------------------~~~~~~~i~~dL~wlGl~~d~~~~~~g~~~~~~QS~r~~~y~~~~ 93 (239)
T cd00808 48 -----S-----------------------------VPEAEEAILEALKWLGLDWDEGPDVGGPYGPYRQSERLEIYRKYA 93 (239)
T ss_pred -----C-----------------------------chHHHHHHHHHHHHcCCCCCcCCccCCCCCCEeeeCCHHHHHHHH
Confidence 0 112235567789999999864 23455555677888
Q ss_pred HHHHhCCCeeeeCceEEEEecCCCCCeEEEecCCccccccchHHHHHHHHhhcCCceEEEEeeCcccchHHHHHHHHHHc
Q 010356 241 DELSKQGLVEESQGARVIFIEGVNIPLIIVKSDGGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRA 320 (512)
Q Consensus 241 ~~L~~~g~~~~~dGa~~~~~~g~~~d~vl~ksDG~~~Y~~~DiA~~~~k~~~~~~d~~iyV~g~~q~~hf~~l~~~~~~~ 320 (512)
++|+++| ||.|+|.... ..+.. ..+.+++ |+|.||..+.+++..+++++
T Consensus 94 ~~L~~~g-------------------------dg~ptY~~a~---~vDD~-~~~ithV--iRG~D~~~~t~~q~~l~~aL 142 (239)
T cd00808 94 EKLLEKG-------------------------DGFPTYHLAN---VVDDH-LMGITHV--IRGEEHLSSTPKQILLYEAL 142 (239)
T ss_pred HHHHHcC-------------------------CCCcccccHH---HHhHH-hcCCCEE--EEChhhhhChHHHHHHHHHc
Confidence 9998877 7999998644 34555 4678888 59999999999998999999
Q ss_pred CCCCCCCCCCCceEEEEeEEEECCCCcceeeecCCeecHHHHHHHHHH--HHHHHHHHhcCCCCCCHHHHHHHHHhhch-
Q 010356 321 GWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAKN--RSKAVLIERGKDKEWTEEELEQTAEAVGY- 397 (512)
Q Consensus 321 g~~~~~~~~~~~~~Hv~~g~V~~~~g~kmSkR~G~~v~l~dll~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~- 397 (512)
|+. .+.+.|+ .++.+.+|+|||||.|+ .++..+.+++.. ...+++..-|....-. .+. ..+
T Consensus 143 g~~------~p~~~h~--pll~~~~g~KLSKR~~~-~~l~~lr~~G~~p~ai~~~l~~lG~~~~~~-~~~------~~~~ 206 (239)
T cd00808 143 GWE------PPKFAHL--PLILNPDGKKLSKRKGD-TSISDYREEGYLPEALLNYLALLGWSPPDG-EEF------FTLE 206 (239)
T ss_pred CCC------CCceEee--ccccCCCCCcccCCCCC-ccHHHHHHCCCCHHHHHHHHHHcCCCCCCC-CCc------CCHH
Confidence 984 3577888 56777899999999998 589998887663 3445554322211000 000 111
Q ss_pred hhHHHHhhccCCCCCcccccccccccc
Q 010356 398 GAAKYFDLKNNRLTNYTFSFDQMLNDK 424 (512)
Q Consensus 398 ~airy~~L~~~~~~~~~Fd~~~~~~~~ 424 (512)
+.+..|.+..-..++..||++++..+|
T Consensus 207 ~l~~~f~~~~~~~~~~~~d~~kL~~~n 233 (239)
T cd00808 207 ELIELFDLERVSKSPAIFDPEKLDWLN 233 (239)
T ss_pred HHHhcCCHhhCCcCcCcCCHHHHHHHH
Confidence 246677887777889999999887665
No 72
>PRK04156 gltX glutamyl-tRNA synthetase; Provisional
Probab=99.70 E-value=1.3e-16 Score=170.78 Aligned_cols=231 Identities=16% Similarity=0.072 Sum_probs=157.6
Q ss_pred CceEEEEeeCCCCCCCCcccchhhhhHHHHHHHHHHHCCCeEEEeeccCccchHHHHHHHHHHhhCCCCCccCcccHHHH
Q 010356 84 VKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGEL 163 (512)
Q Consensus 84 ~~~v~Ve~~spNp~~~lHvGH~R~~iiGD~lar~l~~~G~~V~~~~~i~D~G~qi~~l~~~~~~~~~~~~~~~~~~i~~l 163 (512)
+.+|+. .+.|+|||+|||||+|++++-+.+|| +|+..++--++|... .+..
T Consensus 99 ~g~V~t-RFaPsPtG~LHIGharaalln~~~Ar-----~~~G~~iLRidDTDp----------------------k~~R- 149 (567)
T PRK04156 99 KGKVVM-RFAPNPSGPLHLGHARAAILNDEYAK-----MYGGKFILRFEDTDP----------------------RTKR- 149 (567)
T ss_pred CCeEEE-EeCCCCCCCccHHHHHHHHHHHHHHH-----HcCCEEEEeEccCCC----------------------Cccc-
Confidence 445666 68999999999999999999999999 566666666667311 0000
Q ss_pred HHHHHHHhcccCCChHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHcCCeEe-eeccccccCchHHHHHH
Q 010356 164 QEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLE-EKGESFYNPYIPGVIDE 242 (512)
Q Consensus 164 ~~~y~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~L~I~f~-~~~es~~~~~v~~~~~~ 242 (512)
. ...+.+.+.++++.||+..| ....|.|.+...+.+++
T Consensus 150 ------------~-----------------------------~~e~~~~I~edL~wLGl~wD~~~~qSdr~~~y~~~a~~ 188 (567)
T PRK04156 150 ------------P-----------------------------DPEAYDMILEDLKWLGVKWDEVVIQSDRLEIYYEYARK 188 (567)
T ss_pred ------------c-----------------------------hHHHHHHHHHHHHHcCCCCCCccCcccCHHHHHHHHHH
Confidence 0 11223567789999999875 23357777778889999
Q ss_pred HHhCCCeeee------------C----------------------------ceEEEEecCC-------CCCeEEEecCCc
Q 010356 243 LSKQGLVEES------------Q----------------------------GARVIFIEGV-------NIPLIIVKSDGG 275 (512)
Q Consensus 243 L~~~g~~~~~------------d----------------------------Ga~~~~~~g~-------~~d~vl~ksDG~ 275 (512)
|+++|++|.. . |..++++..+ -.|+|+.|.+..
T Consensus 189 Li~~G~AY~C~cs~ee~~~~r~~g~~~~~R~~~~ee~l~~~e~m~~G~~~~g~~vlR~k~d~~~~n~~~rD~v~~R~~~~ 268 (567)
T PRK04156 189 LIEMGGAYVCTCDPEEFKELRDAGKPCPHRDKSPEENLELWEKMLDGEYKEGEAVVRVKTDLEHPNPSVRDWVAFRIVKT 268 (567)
T ss_pred HHHcCCCccCCCCHHHHHHHHhcCCCCCCcCCCHHHHHHHHHHhhcCccccCCeEEEEECcccCCCCCccccEEEEEcCC
Confidence 9999988841 0 1123333211 146777776332
Q ss_pred ---------cccccchHHHHHHHHhhcCCceEEEEeeCcccchHHHHHHHHHHcCCCCCCCCCCCceEEEEeEEEECCCC
Q 010356 276 ---------FNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDG 346 (512)
Q Consensus 276 ---------~~Y~~~DiA~~~~k~~~~~~d~~iyV~g~~q~~hf~~l~~~~~~~g~~~~~~~~~~~~~Hv~~g~V~~~~g 346 (512)
..|.+=|+|..++.. ..+.+|+| .|.++...-++...+++++|+. .+.+.|+ ++++ .+|
T Consensus 269 ~h~~~Gd~~~i~PtY~fA~~VDD~-l~GITHVi--Rg~d~~~~t~~Q~~l~~~Lg~~------~P~~~H~--~~L~-~~g 336 (567)
T PRK04156 269 PHPRVGDKYRVWPTYNFAVAVDDH-LLGVTHVL--RGKDHIDNTEKQRYIYDYFGWE------YPETIHY--GRLK-IEG 336 (567)
T ss_pred CccccCCCeEEEEEeccCceeeec-CCCCCeEE--cccccccChHHHHHHHHHcCCC------CceEEEc--ceec-CCC
Confidence 223333566555554 36788884 8999988777777888999984 3788898 6676 578
Q ss_pred cceeeec-------C--------CeecHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhchhhHHHHhhccCC-C
Q 010356 347 KRLRTRF-------S--------EVVRLVDLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNR-L 410 (512)
Q Consensus 347 ~kmSkR~-------G--------~~v~l~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~airy~~L~~~~-~ 410 (512)
.|||||+ | +..++..|.+.+ +.++|||.|++.... .
T Consensus 337 ~kLSKR~~~~~i~~g~~~gWDDpr~~Tl~~lrrrG----------------------------~~PeAi~~fl~~lG~s~ 388 (567)
T PRK04156 337 FVLSTSKIRKGIEEGEYSGWDDPRLPTLRALRRRG----------------------------ILPEAIRELIIEVGVKE 388 (567)
T ss_pred ceeecccchhccccCccccccCCchHHHHHHHHcC----------------------------CCHHHHHHHHHHhCCCC
Confidence 8999998 3 223455444443 678999999998765 4
Q ss_pred CCcccccccccccc
Q 010356 411 TNYTFSFDQMLNDK 424 (512)
Q Consensus 411 ~~~~Fd~~~~~~~~ 424 (512)
++..|+|+.+.+.|
T Consensus 389 ~~~~~~~~~L~~~n 402 (567)
T PRK04156 389 TDATISWENLYAIN 402 (567)
T ss_pred CCcccCHHHHHHHH
Confidence 89999999876544
No 73
>cd09287 GluRS_non_core catalytic core domain of non-discriminating glutamyl-tRNA synthetase. Non-discriminating Glutamyl-tRNA synthetase (GluRS) cataytic core domain. These enzymes attach Glu to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.
Probab=99.68 E-value=1.6e-16 Score=153.14 Aligned_cols=209 Identities=15% Similarity=0.060 Sum_probs=143.0
Q ss_pred EeeCCCCCCCCcccchhhhhHHHHHHHHHHHCCCeEEEeeccCccchHHHHHHHHHHhhCCCCCccCcccHHHHHHHHHH
Q 010356 90 DFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQEFYRR 169 (512)
Q Consensus 90 e~~spNp~~~lHvGH~R~~iiGD~lar~l~~~G~~V~~~~~i~D~G~qi~~l~~~~~~~~~~~~~~~~~~i~~l~~~y~~ 169 (512)
-=|.|+|||++||||+|++++.+.+|| ++++..+-.++|... . ..
T Consensus 4 ~RfaPsPtG~lHiG~~rtal~~~l~Ar-----~~~G~~ilRieDtD~---------------------~-r~-------- 48 (240)
T cd09287 4 MRFAPNPNGPLHLGHARAAILNGEYAK-----MYGGKFILRFDDTDP---------------------R-TK-------- 48 (240)
T ss_pred EeCCCCCCCCccHHHHHHHHHHHHHHH-----HcCCEEEEeeCcCCC---------------------C-cc--------
Confidence 368999999999999999999999999 788888888888321 0 00
Q ss_pred HhcccCCChHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHcCCeEee-eccccccCchHHHHHHHHhCCC
Q 010356 170 SKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEE-KGESFYNPYIPGVIDELSKQGL 248 (512)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~L~I~f~~-~~es~~~~~v~~~~~~L~~~g~ 248 (512)
. ....+.+.+.++++.||+..|. ...|.+.+...+++++|.++|.
T Consensus 49 -----~-----------------------------~~~~~~~~i~~dL~wLGl~~d~~~~qS~r~~~y~~~~~~Li~~G~ 94 (240)
T cd09287 49 -----R-----------------------------PDPEAYDMIPEDLEWLGVKWDEVVIASDRIELYYEYARKLIEMGG 94 (240)
T ss_pred -----c-----------------------------chHHHHHHHHHHHHHcCCCCCCccchhccHHHHHHHHHHHHHcCC
Confidence 0 0112334578899999997763 2346777778899999999999
Q ss_pred eeeeCceEEEEecCCCCCeEEEecCCccccccchHHHHHHHHhhcCCceEEEEeeCcccchHHHHHHHHHHcCCCCCCCC
Q 010356 249 VEESQGARVIFIEGVNIPLIIVKSDGGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDS 328 (512)
Q Consensus 249 ~~~~dGa~~~~~~g~~~d~vl~ksDG~~~Y~~~DiA~~~~k~~~~~~d~~iyV~g~~q~~hf~~l~~~~~~~g~~~~~~~ 328 (512)
+|.. .....++++ .|+|. +|..++.. ..+.+++| .|.|+....++...+.+++|+.
T Consensus 95 aY~~--------~~~~~~~~i-----~ptY~---la~vVDD~-~~gIThVi--Rg~d~~~~t~~q~~l~~~Lg~~----- 150 (240)
T cd09287 95 AYVH--------PRTGSKYRV-----WPTLN---FAVAVDDH-LLGVTHVL--RGKDHIDNTEKQRYIYEYFGWE----- 150 (240)
T ss_pred cccC--------cccCCcEEE-----EEccc---cceeeecc-ccCCCeEE--echhhhhCCHHHHHHHHHcCCC-----
Confidence 9951 001124444 26775 34445554 35778884 8999987777666888999984
Q ss_pred CCCceEEEEeEEEECCCCcceeeecCCe---------------ecHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHH
Q 010356 329 TYPKASHVGFGLVLGEDGKRLRTRFSEV---------------VRLVDLLDEAKNRSKAVLIERGKDKEWTEEELEQTAE 393 (512)
Q Consensus 329 ~~~~~~Hv~~g~V~~~~g~kmSkR~G~~---------------v~l~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 393 (512)
.+.+.|+ .++.+ +|+|||||++.. .++..+.+.+
T Consensus 151 -~P~~~H~--pll~~-~~~kLSKR~~~~~i~~~~~~~w~dp~~~~~~~lr~~G--------------------------- 199 (240)
T cd09287 151 -YPETIHW--GRLKI-EGGKLSTSKIRKGIESGEYEGWDDPRLPTLRALRRRG--------------------------- 199 (240)
T ss_pred -CCcEEee--eeecC-CCCeeccccccccccccccccccCcchHHHHHHHHCC---------------------------
Confidence 3678898 55764 579999998531 2333333332
Q ss_pred hhchhhHHHHhhccC-CCCCccccccccccc
Q 010356 394 AVGYGAAKYFDLKNN-RLTNYTFSFDQMLND 423 (512)
Q Consensus 394 ~~~~~airy~~L~~~-~~~~~~Fd~~~~~~~ 423 (512)
+-++||+-|+..-- ..++..|+|+.+..+
T Consensus 200 -~~p~ai~~~~~~lG~s~~~~~~~~~~l~~~ 229 (240)
T cd09287 200 -IRPEAIRDFIIEVGVKQTDATISWENLYAI 229 (240)
T ss_pred -CCHHHHHHHHHHhCCCCCCCccCHHHHHHH
Confidence 45677776665543 356778888876543
No 74
>PF01921 tRNA-synt_1f: tRNA synthetases class I (K); InterPro: IPR002904 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Lysyl-tRNA synthetase (6.1.1.6 from EC) is an alpha 2 homodimer that belong to both class I and class II. In eubacteria and eukaryota lysyl-tRNA synthetases belong to class II in the same family as aspartyl tRNA synthetase. The class Ic lysyl-tRNA synthetase family is present in archaea and in a number of bacterial groups that include the alphaproteobacteria and spirochaetes[]. A refined crystal structures shows that the active site of LysU is shaped to position the substrates for the nucleophilic attack of the lysine carboxylate on the ATP alpha-phosphate. No residues are directly involved in catalysis, but a number of highly conserved amino acids and three metal ions coordinate the substrates and stabilise the pentavalent transition state. A loop close to the catalytic pocket, disordered in the lysine-bound structure, becomes ordered upon adenine binding [].; GO: 0000166 nucleotide binding, 0004824 lysine-tRNA ligase activity, 0005524 ATP binding, 0006430 lysyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IRX_A.
Probab=99.68 E-value=9e-17 Score=162.18 Aligned_cols=260 Identities=15% Similarity=0.206 Sum_probs=126.7
Q ss_pred CceEEEEeeCCCCCCCCcccchhhhhHHHHHHHHHHHCCCeEEEeeccCccchHHHHHHHHHHhhCCCC--CccCcccHH
Q 010356 84 VKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNS--EDANETAIG 161 (512)
Q Consensus 84 ~~~v~Ve~~spNp~~~lHvGH~R~~iiGD~lar~l~~~G~~V~~~~~i~D~G~qi~~l~~~~~~~~~~~--~~~~~~~i~ 161 (512)
...+++ -++-.|.|..|||++|..+.+|+++|.|+.+|++|..++..+|... +.. +....|+. +.+-+.|+.
T Consensus 22 ~~~~v~-~sG~sPSG~~HIGn~rEv~~~~~V~~al~~~g~~~r~i~~~DD~D~-lRK----vP~~~p~~~~~~ylg~Plt 95 (360)
T PF01921_consen 22 KEPYVF-ASGISPSGLPHIGNFREVLRADMVARALRDRGKDVRLIYFSDDMDP-LRK----VPPNVPNPELEKYLGKPLT 95 (360)
T ss_dssp -SEEEE-EEEE--SS---HHHHHHHHHHHHHHHHHHTTT-EEEEEEEE-TTSB----------TTS-CC-CCCCTTSBTT
T ss_pred CccEEE-ecCCCCCCCcccccccchhhHHHHHHHHHHcCCCEEEEEEeecCCc-ccC----CCCCCChHHHHHhcCCccc
Confidence 445666 8999999999999999999999999999999999999999999765 211 11222332 222333343
Q ss_pred HHHHHHHHHhcccCCChHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHcCCeEeeecc-cccc-CchHHH
Q 010356 162 ELQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKGE-SFYN-PYIPGV 239 (512)
Q Consensus 162 ~l~~~y~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~L~I~f~~~~e-s~~~-~~v~~~ 239 (512)
++ .||. | +. ..+++++...|.+.++.|||+++..+. ..|. +...+.
T Consensus 96 ~V------------PdP~--------------G---~~---~SyaeH~~~~~~~~L~~~gie~e~~s~te~Y~sG~y~~~ 143 (360)
T PF01921_consen 96 RV------------PDPF--------------G---CH---ESYAEHFNAPFEEFLDEFGIEYEFISQTEMYRSGRYDEQ 143 (360)
T ss_dssp TS------------B-TT--------------S---SS---SCHHHHHHHHHHHHHHTTT---EEEECCCCCCTTTTHHH
T ss_pred cC------------CCCC--------------C---CC---ccHHHHHHHHHHHHHHHcCCceEEEeHHHhhhCCchHHH
Confidence 21 2221 1 11 224788889999999999999864332 4453 322221
Q ss_pred H-HHHHhCCCee----------eeCceEEE--Eec--CCCCCeEEEec---CCccccccchHHHH------------HHH
Q 010356 240 I-DELSKQGLVE----------ESQGARVI--FIE--GVNIPLIIVKS---DGGFNYASTDLAAL------------WYR 289 (512)
Q Consensus 240 ~-~~L~~~g~~~----------~~dGa~~~--~~~--g~~~d~vl~ks---DG~~~Y~~~DiA~~------------~~k 289 (512)
+ ..|.+..-+. ..++.+-| .++ |.-....+..- .++.+|.++.++.. -||
T Consensus 144 i~~aL~~~~~I~~Il~~~~~~~~~~~y~Pf~piC~~cGri~tt~v~~~d~~~~~v~Y~c~~cG~~g~~~i~~g~gKL~Wk 223 (360)
T PF01921_consen 144 IRTALENRDEIREILNEYRGRERPETYSPFLPICEKCGRIDTTEVTEYDPEGGTVTYRCEECGHEGEVDITGGNGKLQWK 223 (360)
T ss_dssp HCHHHHTHHHHHHHHHHHHHHT--TT--SEEEEETTTEE--EEEEEEE--SSSEEEEE--TTS---EEETTTT-EEE-HH
T ss_pred HHHHHHhHHHHHHHHHHhcCcCCCCCeeeeeeeccccCCcccceeeEeecCCCEEEEEecCCCCEEEEecCCCcccccCC
Confidence 1 1121111111 11221111 122 22111112221 34566665322211 122
Q ss_pred H------hhcCCceEEEEeeCcccc---hHHHHHHHH-HHcCCCCCCCCCCCceEEEEeEEEECCCCcceeeecCCeecH
Q 010356 290 L------NEEKAEWIIYVTDVGQQL---HFDMVFSAA-KRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRL 359 (512)
Q Consensus 290 ~------~~~~~d~~iyV~g~~q~~---hf~~l~~~~-~~~g~~~~~~~~~~~~~Hv~~g~V~~~~g~kmSkR~G~~v~l 359 (512)
+ ...+.| +=--|.||.. -+..-..++ +.+|+.| + .|+.|+|++..+|.|||||+||++++
T Consensus 224 vDW~mRW~~lgVd--fEp~GKDH~~~GGS~d~~~~I~~~i~g~~p------P--~~~~YE~~~~~g~~kmSsSkG~~~t~ 293 (360)
T PF01921_consen 224 VDWPMRWAALGVD--FEPFGKDHASPGGSYDTSKRIAREILGYEP------P--VPFPYEFFLDKGGGKMSSSKGNGITP 293 (360)
T ss_dssp HHHHHHHHHTT-S--EEEEEHHHHCTTSHHHHHHHHHHHCC-------------EEEEE--EEES--------------H
T ss_pred CcChhhhhhcCce--eccCCCccCCCCCChhhHHHHHHHHhCCCC------C--CCCCeeEEEeCCCcccccCCCCccCH
Confidence 2 123433 2235777766 677666777 6788853 2 67899999987777999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhchhhHHHHhhccCCCCCcccccc-cc
Q 010356 360 VDLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNRLTNYTFSFD-QM 420 (512)
Q Consensus 360 ~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~airy~~L~~~~~~~~~Fd~~-~~ 420 (512)
+|+|+- ..++.+||++++..|.+..+|+++ .+
T Consensus 294 ~e~L~~-----------------------------~~PE~lr~l~~~~~P~~~~~~~~~~~i 326 (360)
T PF01921_consen 294 EEWLEY-----------------------------APPESLRYLMARTKPNKAKDFSFDLVI 326 (360)
T ss_dssp HHHHTT-----------------------------S-HHHHHHHHHCS-TTS-EEE--STTH
T ss_pred HHHHHh-----------------------------cCHHHHHHHHcccCCCcceEeccCcch
Confidence 999997 478999999999999999999988 44
No 75
>PF00749 tRNA-synt_1c: tRNA synthetases class I (E and Q), catalytic domain; InterPro: IPR020058 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Glutamyl-tRNA synthetase (6.1.1.17 from EC) is a class Ic synthetase and shows several similarities with glutaminyl-tRNA synthetase concerning structure and catalytic properties. It is an alpha2 dimer. To date one crystal structure of a glutamyl-tRNA synthetase (Thermus thermophilus) has been solved. The molecule has the form of a bent cylinder and consists of four domains. The N-terminal half (domains 1 and 2) contains the 'Rossman fold' typical for class I synthetases and resembles the corresponding part of Escherichia coli GlnRS, whereas the C-terminal half exhibits a GluRS-specific structure []. ; GO: 0000166 nucleotide binding, 0005524 ATP binding, 0016876 ligase activity, forming aminoacyl-tRNA and related compounds, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 2HZ7_A 2CFO_A 4A91_A 1NZJ_A 1N78_A 1G59_C 2CV2_A 2CV1_A 2CV0_B 1GLN_A ....
Probab=99.67 E-value=8.9e-16 Score=155.53 Aligned_cols=240 Identities=20% Similarity=0.217 Sum_probs=157.4
Q ss_pred eeCCCCCCCCcccchhhhhHHHHHHHHHHHCCCeEEEeeccCccchHHHHHHHHHHhhCCCCCccCcccHHHHHHHHHHH
Q 010356 91 FSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQEFYRRS 170 (512)
Q Consensus 91 ~~spNp~~~lHvGH~R~~iiGD~lar~l~~~G~~V~~~~~i~D~G~qi~~l~~~~~~~~~~~~~~~~~~i~~l~~~y~~~ 170 (512)
=-.|+|||+|||||+|++++-..+|| +..|-=+.|+ .|..
T Consensus 5 RFAPsPtG~lHiG~~r~al~n~~~Ar--~~~G~~iLRi---eDtD----------------------------------- 44 (314)
T PF00749_consen 5 RFAPSPTGYLHIGHARTALLNYLFAR--KYGGKFILRI---EDTD----------------------------------- 44 (314)
T ss_dssp EE---SSSS-BHHHHHHHHHHHHHHH--HTTSEEEEEE---ETSS-----------------------------------
T ss_pred eeCCCCCCCcccchhHHHHHHHHHHh--ccCceEEEec---cccc-----------------------------------
Confidence 45799999999999999999999999 5567666662 3310
Q ss_pred hcccCCChHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHcCCeEee--eccccccCchHHHHHHHHhCCC
Q 010356 171 KNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEE--KGESFYNPYIPGVIDELSKQGL 248 (512)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~L~I~f~~--~~es~~~~~v~~~~~~L~~~g~ 248 (512)
+. +....+.+.+.++|+.||+..|+ +..|.+.+...+++++|+++|.
T Consensus 45 -------~~------------------------R~~~~~~~~i~~~L~wlGl~~D~~~~~QS~r~~~Y~~~~~~L~~~g~ 93 (314)
T PF00749_consen 45 -------PE------------------------RCRPEFYDAILEDLRWLGLEWDYGPYYQSDRLEIYQEAAEKLIDKGK 93 (314)
T ss_dssp -------TT------------------------TCHHHHHHHHHHHHHHHT---STCEEEGGGGHHHHHHHHHHHHHTTS
T ss_pred -------cc------------------------cchhhHHHHHHhheeEEEEecCCeEEeHHHHHHHHHHHHHHHhhcCC
Confidence 00 00123345567788899998862 3346666667788888888888
Q ss_pred eee----------------e---------------------------CceEEEEec--------------C-------CC
Q 010356 249 VEE----------------S---------------------------QGARVIFIE--------------G-------VN 264 (512)
Q Consensus 249 ~~~----------------~---------------------------dGa~~~~~~--------------g-------~~ 264 (512)
+|. . ++..++++. | ..
T Consensus 94 aY~C~Csr~~l~~~r~~~~~~~~~~~~~y~~~c~~~~~~~~~~~~~~~~~~~iRlk~~~~~~~~~~D~v~g~i~~~~~~~ 173 (314)
T PF00749_consen 94 AYPCFCSREELKAAREAQEGAGCPHRPRYPGTCRELTEEEMRAGLAKGGPAVIRLKVPMESPIAFRDLVRGRIIFDPSDL 173 (314)
T ss_dssp EEEEESEHHHHHHHHHHHHHTTSTTTTSBHHHHHCHHHHHHHHHHHTTTSEEEEE-SSSTCCEEEEETTTEEEEEEGGGS
T ss_pred CccccCCHHHHHHHHHHhhccCCCccccchhhhhhhhHHHHHhhhccCCceeeeeecccccccccccCcceeeeeccccC
Confidence 774 0 112233322 0 12
Q ss_pred CCeEEEecCCccccccchHHHHHHHHhhcCCceEEEEeeCcccchHHHHHHHHHHcCCCCCCCCCCCceEEEEeEEEECC
Q 010356 265 IPLIIVKSDGGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGE 344 (512)
Q Consensus 265 ~d~vl~ksDG~~~Y~~~DiA~~~~k~~~~~~d~~iyV~g~~q~~hf~~l~~~~~~~g~~~~~~~~~~~~~Hv~~g~V~~~ 344 (512)
.|+|+.|+||.|+|. +|..++.. ..+.+|| |.|.|+...-++...+.+++|+. .+.+.|+ .++++.
T Consensus 174 ~D~vi~r~dg~ptY~---fA~vVDD~-~~gITHV--iRG~D~l~~t~~Q~~L~~~Lg~~------~P~~~H~--pl~l~~ 239 (314)
T PF00749_consen 174 GDFVIRRSDGYPTYH---FAVVVDDH-LMGITHV--IRGEDLLSSTPRQILLYEALGWP------PPPYAHL--PLILNE 239 (314)
T ss_dssp BTEEEESTTSEB-HH---HHHHHHHH-HTT-SEE--EEEGGGTTCHHHHHHHHHHCTSS------S-EEEEE--EEEEET
T ss_pred CchhccccccCcccc---cceeeccc-ccccCeE--EEccccccccHHHHHHHHHhCCC------CcceEee--eeeecC
Confidence 589999999999997 56667776 4678899 49999977666666788999985 3778998 456778
Q ss_pred CCcceeeecCCee-cHHHHHHHHH--HHHHHHHHHhcCCCCCCHHHHHHHHHhhchhhHHHHhhccCCCCCccccccccc
Q 010356 345 DGKRLRTRFSEVV-RLVDLLDEAK--NRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNRLTNYTFSFDQML 421 (512)
Q Consensus 345 ~g~kmSkR~G~~v-~l~dll~~~~--~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~airy~~L~~~~~~~~~Fd~~~~~ 421 (512)
+|+|+|||+|... .+.++.+.+. +...+.+..+| |+++...++.. -.+.++.|+++....++..||.+++.
T Consensus 240 ~g~kLSKR~~~~~i~~~~~r~~g~~~~~~l~~L~~lG----~~~~~~~e~~~--~~~~~~~f~~~~~~~~~~~fd~~kL~ 313 (314)
T PF00749_consen 240 DGKKLSKRKGAKSIELGDYREWGDPPEATLNYLARLG----WSPEAIREFFS--LDELIKQFDLSKISKSPAVFDRKKLD 313 (314)
T ss_dssp TSSBSSTTCSHHBHHHHHHHHTT-THHHHHHHHHHTT----B-HCTHHCHHH--HHHHHHHC-GGGBHSSHEEHHHHHHH
T ss_pred CCcEechhhccccccccccccCCCCHHHHHHHHHHhc----CCcchhhhhcC--HHHHHHHhhHhhccCchHHhCHHHhC
Confidence 9999999999663 3777877776 44778887654 55433333322 24567888888888888899887753
No 76
>cd00418 GlxRS_core catalytic core domain of glutamyl-tRNA and glutaminyl-tRNA synthetase. Glutamyl-tRNA synthetase(GluRS)/Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Glu or Gln, respectively, to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea, cellular organelles, and some bacteria lack GlnRS. In these cases, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme. The discriminating form of GluRS differs from GlnRS and the non-discriminating form of GluRS in their C-terminal anti-codon bind
Probab=99.67 E-value=4.5e-16 Score=149.44 Aligned_cols=217 Identities=19% Similarity=0.128 Sum_probs=152.9
Q ss_pred eeCCCCCCCCcccchhhhhHHHHHHHHHHHCCCeEEEeeccCccchHHHHHHHHHHhhCCCCCccCcccHHHHHHHHHHH
Q 010356 91 FSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQEFYRRS 170 (512)
Q Consensus 91 ~~spNp~~~lHvGH~R~~iiGD~lar~l~~~G~~V~~~~~i~D~G~qi~~l~~~~~~~~~~~~~~~~~~i~~l~~~y~~~ 170 (512)
=-.|+|||+||+||+|++++...+||-. .|-=+.| |.|... -
T Consensus 5 RFAPsPtG~lHlG~~r~al~n~l~Ar~~--~G~~iLR---ieDtD~-----------------------~---------- 46 (230)
T cd00418 5 RFAPSPTGYLHIGHARTALFNFAFARKY--GGKFILR---IEDTDP-----------------------E---------- 46 (230)
T ss_pred EeCCCCCCcccHHHHHHHHHHHHHHHHc--CCeEEEE---eCcCCC-----------------------C----------
Confidence 3579999999999999999999999864 4554544 333100 0
Q ss_pred hcccCCChHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHcCCeEee--eccccccCchHHHHHHHHhCCC
Q 010356 171 KNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEE--KGESFYNPYIPGVIDELSKQGL 248 (512)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~L~I~f~~--~~es~~~~~v~~~~~~L~~~g~ 248 (512)
+....+.+.+.++++.||+..|. ...|.+.+...+.+++|.++|
T Consensus 47 ---------------------------------R~~~~~~~~I~~dL~wlGl~wd~~~~~QS~r~~~y~~~~~~L~~~g- 92 (230)
T cd00418 47 ---------------------------------RSRPEYVESILEDLKWLGLDWDEGPYRQSDRFDLYRAYAEELIKKG- 92 (230)
T ss_pred ---------------------------------CCChHHHHHHHHHHHHcCCCCCCCeeehhcCHHHHHHHHHHHHHcC-
Confidence 01122345677899999999863 335666677789999999988
Q ss_pred eeeeCceEEEEecCCCCCeEEEecCCccccccchHHHHHHHHhhcCCceEEEEeeCcccchHHHHHHHHHHcCCCCCCCC
Q 010356 249 VEESQGARVIFIEGVNIPLIIVKSDGGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDS 328 (512)
Q Consensus 249 ~~~~dGa~~~~~~g~~~d~vl~ksDG~~~Y~~~DiA~~~~k~~~~~~d~~iyV~g~~q~~hf~~l~~~~~~~g~~~~~~~ 328 (512)
|.|+|.. |..++.. ..+.+++ |.|.|+...-++...+++++|+.
T Consensus 93 -------------------------g~p~Y~l---a~vvDD~-~~gIThV--iRG~D~l~st~~q~~l~~~Lg~~----- 136 (230)
T cd00418 93 -------------------------GYPLYNF---VHPVDDA-LMGITHV--LRGEDHLDNTPIQDWLYEALGWE----- 136 (230)
T ss_pred -------------------------CCccccc---ccccccc-ccCCCEE--EECHhhhhchHHHHHHHHHcCCC-----
Confidence 7788874 5555655 3678888 49999988777777888999984
Q ss_pred CCCceEEEEeEEEECCCCcceeeecCCeecHHHHHHHHHH--HHHHHHHHhcCCCCCCHHHHHHHHHhhchhhHHHHhhc
Q 010356 329 TYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAKN--RSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLK 406 (512)
Q Consensus 329 ~~~~~~Hv~~g~V~~~~g~kmSkR~G~~v~l~dll~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~airy~~L~ 406 (512)
.+.+.|+ .++.+.+|+|||||+|+ +++.++.+++.. ...+.+..-|-... ++.++... .+++..|.+.
T Consensus 137 -~P~~~H~--pll~~~~g~KLSKr~~~-~~i~~~r~~G~~p~ai~~~l~~lG~~~~-~~~~~~~~-----~~li~~f~~~ 206 (230)
T cd00418 137 -PPRFYHF--PRLLLEDGTKLSKRKLN-TTLRALRRRGYLPEALRNYLALIGWSKP-DGHELFTL-----EEMIAAFSVE 206 (230)
T ss_pred -CCeEEEe--eeeeCCCCCCccCcCCC-cCHHHHHHCCCcHHHHHHHHHHcCCCCC-CCccccCH-----HHHHHhcCHh
Confidence 4678898 66888899999999997 589998886663 34555553232111 01122111 1357778888
Q ss_pred cCCCCCccccccccccccC
Q 010356 407 NNRLTNYTFSFDQMLNDKG 425 (512)
Q Consensus 407 ~~~~~~~~Fd~~~~~~~~~ 425 (512)
.-..++..||++++..+|.
T Consensus 207 ~~~~~~~~~d~~kL~~~N~ 225 (230)
T cd00418 207 RVNSADATFDWAKLEWLNR 225 (230)
T ss_pred hCCCCCcccCHHHHHHHHH
Confidence 8888999999999877653
No 77
>COG1384 LysS Lysyl-tRNA synthetase (class I) [Translation, ribosomal structure and biogenesis]
Probab=99.64 E-value=6.1e-15 Score=152.79 Aligned_cols=265 Identities=18% Similarity=0.241 Sum_probs=159.2
Q ss_pred ceEEEEeeCCCCCCCCcccchhhhhHHHHHHHHHHHCCCeEEEeeccCccchHHHHHHHHHHhhCCCCCccCcccHHHHH
Q 010356 85 KKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQ 164 (512)
Q Consensus 85 ~~v~Ve~~spNp~~~lHvGH~R~~iiGD~lar~l~~~G~~V~~~~~i~D~G~qi~~l~~~~~~~~~~~~~~~~~~i~~l~ 164 (512)
..++| -++.+|.|..|||++|-.+.||.++|.|+.+|++|..++..+|+.. +. +.|..- ++. +..
T Consensus 19 ~~~~v-~tGisPSG~~HIGn~rEv~t~d~V~ralr~~g~~~r~I~~~DD~D~-lR--------kvp~~l--p~~---~~~ 83 (521)
T COG1384 19 DEYVV-ATGISPSGLIHIGNFREVLTADAVRRALRDRGDEVRLIYISDDYDP-LR--------KVPRNL--PDP---EEL 83 (521)
T ss_pred CcEEE-ecCcCCCCCcccccHHHHHHHHHHHHHHHHcCCceEEEEEccCCcc-cc--------cCCCCC--CCh---HHH
Confidence 55777 7899999999999999999999999999999999999999999754 11 112100 000 000
Q ss_pred HHHHHHhcccCCChHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHcCCeEeeecc-cccc-CchHHHHHH
Q 010356 165 EFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKGE-SFYN-PYIPGVIDE 242 (512)
Q Consensus 165 ~~y~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~L~I~f~~~~e-s~~~-~~v~~~~~~ 242 (512)
+-|...--.--.+|. | +. ..+++++...|.+.+++|||..++.+. ..|. +.-.+++..
T Consensus 84 e~Ylg~Plt~IPdP~--------------G---~~---~Sya~hf~~~f~~~l~~~Gi~~E~~s~se~Yk~G~~~~~i~~ 143 (521)
T COG1384 84 EQYLGMPLTEIPDPF--------------G---CC---DSYAEHFLRPFEEFLDEFGIEVEFVSATELYKSGLYDEAIRI 143 (521)
T ss_pred HHHcCCccccCCCCc--------------c---cc---chHHHHHHHHHHHHHHhcCCceEEEEhHHhhhcccHHHHHHH
Confidence 111100000002221 1 12 235788899999999999999865433 3442 322222222
Q ss_pred HHhC-C--------Cee-eeCceEEEEe---c--CC-CCCeEE-EecCCccccccch-------HH-H---HHHHHhhcC
Q 010356 243 LSKQ-G--------LVE-ESQGARVIFI---E--GV-NIPLII-VKSDGGFNYASTD-------LA-A---LWYRLNEEK 294 (512)
Q Consensus 243 L~~~-g--------~~~-~~dGa~~~~~---~--g~-~~d~vl-~ksDG~~~Y~~~D-------iA-~---~~~k~~~~~ 294 (512)
..++ . +.- +-.+.+|-.. + |. ....|+ +..+|+.+|.+.+ |- . .-||. .|+
T Consensus 144 ale~rdeI~~il~~~~~~~~~e~~~P~~piC~kcGri~~t~v~~~d~~~~v~Y~Ce~Gh~g~v~ir~g~~KL~WRv-dWp 222 (521)
T COG1384 144 ALERRDEIMEILNEYRGRELEEDWSPFMPICEKCGRILTTPVIEWDGEGTVEYRCECGHEGEVDIRGGEGKLPWRV-DWP 222 (521)
T ss_pred HHhhHHHHHHHHHHhcCCcccCCceeccccccccCCcceeEEEEecCCceEEEEecCCccceeeccccCcccccCc-Ccc
Confidence 2111 0 000 1123333221 1 33 111221 2334566776642 21 0 12333 233
Q ss_pred CceEEE-----EeeCccc---chHHHHHHHHH-HcCCCCCCCCCCCceEEEEeEEEECCCCcceeeecCCeecHHHHHHH
Q 010356 295 AEWIIY-----VTDVGQQ---LHFDMVFSAAK-RAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDE 365 (512)
Q Consensus 295 ~d~~iy-----V~g~~q~---~hf~~l~~~~~-~~g~~~~~~~~~~~~~Hv~~g~V~~~~g~kmSkR~G~~v~l~dll~~ 365 (512)
..|..- --|.||. +-+.....|+. .+|+.| | .++.|+++.+.+|.|||||+||+|+++|+|+-
T Consensus 223 ~RW~~lgVd~EPfGKDH~a~ggSydtg~~I~~ei~g~~p---P-----~~~~YE~i~lkg~~~mSsSkG~~i~~~dwlev 294 (521)
T COG1384 223 MRWAALGVDFEPFGKDHAAAGGSYDTGKRIAREIFGYEP---P-----VPFVYEWILLKGGGKMSSSKGNVISLSDWLEV 294 (521)
T ss_pred chhhccCcccccCCcccccccCchHHHHHHHHHhcCCCC---C-----CCCceEEEEecCCcccccCCCcEEcHHHHHHh
Confidence 222211 1244442 34666677775 778753 2 45678999877778999999999999999998
Q ss_pred HHHHHHHHHHHhcCCCCCCHHHHHHHHHhhchhhHHHHhhccCCCCCccccccc-ccc
Q 010356 366 AKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNRLTNYTFSFDQ-MLN 422 (512)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~airy~~L~~~~~~~~~Fd~~~-~~~ 422 (512)
..++.+||++++..|.+.++||++. +++
T Consensus 295 -----------------------------~~pE~lry~~~r~kP~r~~~~d~~~~il~ 323 (521)
T COG1384 295 -----------------------------APPEVLRYLIARTKPNRHIDFDFDLGILK 323 (521)
T ss_pred -----------------------------cCHhHeeeeeeecCCCcceecCCCCChhH
Confidence 4789999999999999999999887 554
No 78
>COG0008 GlnS Glutamyl- and glutaminyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]
Probab=99.63 E-value=3.7e-15 Score=156.86 Aligned_cols=246 Identities=20% Similarity=0.186 Sum_probs=168.4
Q ss_pred EEEeeCCCCCCCCcccchhhhhHHHHHHHHHHHCCCeEEEeeccCccchHHHHHHHHHHhhCCCCCccCcccHHHHHHHH
Q 010356 88 VVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQEFY 167 (512)
Q Consensus 88 ~Ve~~spNp~~~lHvGH~R~~iiGD~lar~l~~~G~~V~~~~~i~D~G~qi~~l~~~~~~~~~~~~~~~~~~i~~l~~~y 167 (512)
++-=.-|+|||+|||||+|++++-..+||-. .|-=+.| |.|... + .
T Consensus 10 v~tRFAPsPtG~LHiG~artAl~N~~~Ar~~--~G~fiLR---iEDTD~--------------~---------R------ 55 (472)
T COG0008 10 VRTRFAPSPTGYLHIGHARTALLNYLYARKY--GGKFILR---IEDTDP--------------E---------R------ 55 (472)
T ss_pred eEEEECcCCCCccchHHHHHHHHHHHHHHHh--CCEEEEE---ecCCCC--------------C---------C------
Confidence 4557789999999999999999999999864 5666666 223100 0 0
Q ss_pred HHHhcccCCChHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHcCCeEee--eccccccCchHHHHHHHHh
Q 010356 168 RRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEE--KGESFYNPYIPGVIDELSK 245 (512)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~L~I~f~~--~~es~~~~~v~~~~~~L~~ 245 (512)
.. ..+.+.+.++++.||++.|. +..|.+.+...+++++|++
T Consensus 56 --------~~-----------------------------~e~~~~I~~~L~WLGl~wde~~~~QS~r~~~Y~~~~~~Li~ 98 (472)
T COG0008 56 --------ET-----------------------------PEAEDAILEDLEWLGLDWDEGPYYQSERFDIYYEYAEKLIE 98 (472)
T ss_pred --------CC-----------------------------HHHHHHHHHHHHhcCCCCCCceeehhhhHHHHHHHHHHHHH
Confidence 01 12234556678888888753 3346665666777777877
Q ss_pred CCCeeee----------------Cc--------------------------eEEEEec------C---------------
Q 010356 246 QGLVEES----------------QG--------------------------ARVIFIE------G--------------- 262 (512)
Q Consensus 246 ~g~~~~~----------------dG--------------------------a~~~~~~------g--------------- 262 (512)
+|.+|.. .| ..++++. +
T Consensus 99 ~G~AY~c~ct~eele~~R~~~~~~g~~p~~y~r~~~~L~~~~~~~~~~~~~~~viR~k~~~~~~~~~~~D~v~g~i~~~~ 178 (472)
T COG0008 99 KGKAYVCYCTPEELEEMRELRGALGEPPPSYDRDERNLTLFEKMADLGEGGPAVVRLKIPMAHPGPVFRDLVRGRIVFAP 178 (472)
T ss_pred CCCeEEecCCHHHHHHHHHHHhhcCCCCCCCCchhhccchHHHHhhcccCCCeEEEEeCCCCCCCCccccceeeeEecCc
Confidence 7777620 01 0122111 0
Q ss_pred -CCCCeEEEecCCccccccchHHHHHHHHhhcCCceEEEEeeCcccchHHHHHHHHHHcCCCCCCCCCCCceEEEEeEEE
Q 010356 263 -VNIPLIIVKSDGGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLV 341 (512)
Q Consensus 263 -~~~d~vl~ksDG~~~Y~~~DiA~~~~k~~~~~~d~~iyV~g~~q~~hf~~l~~~~~~~g~~~~~~~~~~~~~Hv~~g~V 341 (512)
...| |+.|+||.|||.. |..++.. ..+.+|+| .|.||...-++...+.+++|+. .+.+.|+ ++|
T Consensus 179 ~~~~d-v~~r~dg~ptY~f---avvvDD~-~mgITHvi--RG~d~~~nt~~q~~l~~~lg~~------~P~~~H~--~li 243 (472)
T COG0008 179 KHPDF-VILRYDGYPTYNF---AVVVDDH-LMGITHVL--RGEDHLDNTPRQIWLYEALGWP------PPVYAHL--PLL 243 (472)
T ss_pred cCCcc-eeecCCCCcccce---eeeechh-hcCCceEE--echhhccCCHHHHHHHHHcCCC------CCcEEEe--eee
Confidence 1234 8999999999975 3334444 35788985 9999988888887889999995 3788898 778
Q ss_pred ECCCCcceeeecCCeecHHHHHHHHH--HHHHHHHHHhcCCCCCCHHHHHHHHHhhchhhHHHHhhccCCCCCccccccc
Q 010356 342 LGEDGKRLRTRFSEVVRLVDLLDEAK--NRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNRLTNYTFSFDQ 419 (512)
Q Consensus 342 ~~~~g~kmSkR~G~~v~l~dll~~~~--~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~airy~~L~~~~~~~~~Fd~~~ 419 (512)
++.+|+|||||+| .+++.++.+.+. +++.+.+..++. +++++..+..... ..+..|+++....++..||.++
T Consensus 244 ~~~~g~kLSKr~~-~~~~~~~~~~G~~~~al~~~~allg~--~~~~~~~e~f~~~---~~~~~fd~~~~~~~~~~fd~~k 317 (472)
T COG0008 244 LNEDGKKLSKRKG-AVSIGEYRVEGWLPPALPNLLALLGR--GYPPEAIEIFSLE---EGIKWFDLTIVSKSPAAFDRKK 317 (472)
T ss_pred ecCCCCeecCccC-ccccchhhhcCCCcHHHHHHHHHhcC--CCChhhHHHHHHH---HHHhhhhhhhhhcccccccHHH
Confidence 8888999999999 778888877776 345566554431 2334444443332 4578899999999999999999
Q ss_pred cccccC
Q 010356 420 MLNDKG 425 (512)
Q Consensus 420 ~~~~~~ 425 (512)
+...++
T Consensus 318 L~~~n~ 323 (472)
T COG0008 318 LDWLNP 323 (472)
T ss_pred hHhhhH
Confidence 887764
No 79
>TIGR03838 queuosine_YadB glutamyl-queuosine tRNA(Asp) synthetase. This protein resembles a shortened glutamyl-tRNA ligase, but its purpose is to modify tRNA(Asp) at a queuosine position in the anticodon rather than to charge a tRNA with its cognate amino acid.
Probab=99.57 E-value=1.6e-14 Score=142.40 Aligned_cols=185 Identities=17% Similarity=0.189 Sum_probs=131.5
Q ss_pred eCCCCCCCCcccchhhhhHHHHHHHHHHHCCCeEEEeeccCccchHHHHHHHHHHhhCCCCCccCcccHHHHHHHHHHHh
Q 010356 92 SSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQEFYRRSK 171 (512)
Q Consensus 92 ~spNp~~~lHvGH~R~~iiGD~lar~l~~~G~~V~~~~~i~D~G~qi~~l~~~~~~~~~~~~~~~~~~i~~l~~~y~~~~ 171 (512)
-.|+|||+|||||+|++++-..+|| ++-|-=+.| |.|..
T Consensus 5 FAPSPtG~lHiG~~rtAL~n~l~Ar--~~gG~~iLR---iEDtD------------------------------------ 43 (272)
T TIGR03838 5 FAPSPSGPLHFGSLVAALGSYLDAR--AHGGRWLVR---IEDLD------------------------------------ 43 (272)
T ss_pred eCCCCCCcccHHHHHHHHHHHHHHH--HhCCEEEEE---eCcCC------------------------------------
Confidence 3699999999999999999999999 445665555 33310
Q ss_pred cccCCChHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHcCCeEee--eccccccCchHHHHHHHHhCCCe
Q 010356 172 NRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEE--KGESFYNPYIPGVIDELSKQGLV 249 (512)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~L~I~f~~--~~es~~~~~v~~~~~~L~~~g~~ 249 (512)
+ .+....+.+.+.++++.||+..|. ...|.+.+.-.+++++|+++|.+
T Consensus 44 ------~------------------------~R~~~~~~~~I~~dL~wLGl~wDe~~~~QS~r~~~Y~~~~~~L~~~G~a 93 (272)
T TIGR03838 44 ------P------------------------PREVPGAADDILRTLEAYGLHWDGEVVYQSQRHALYQAALDRLLAAGLA 93 (272)
T ss_pred ------C------------------------CCCChHHHHHHHHHHHHcCCCCCCCeeeeeCCHHHHHHHHHHHHHcCCE
Confidence 0 000122335677899999999863 23566666778899999999988
Q ss_pred ee-------------e-----Cc--------------eEEEEec-----------C--------CCCCeEEEecCCcccc
Q 010356 250 EE-------------S-----QG--------------ARVIFIE-----------G--------VNIPLIIVKSDGGFNY 278 (512)
Q Consensus 250 ~~-------------~-----dG--------------a~~~~~~-----------g--------~~~d~vl~ksDG~~~Y 278 (512)
|. . +| ++-++++ | ...|+||.|+||.|||
T Consensus 94 Y~C~Ct~eel~~~~~~~~~~y~~~cr~~~~~~~~~~~~~Rlk~~~~~~~~~D~~~g~~~~~~~~~~~D~vi~R~Dg~ptY 173 (272)
T TIGR03838 94 YPCQCTRKEIAAAAGDGGGIYPGTCRNGLLGRPARPAAWRLRVPDGVIAFDDRLQGPQQQDLAAAVGDFVLRRADGLFAY 173 (272)
T ss_pred EecCCCHHHHHHHhcCCCCCCCchhhcccccccCCCceEEEecCCCCceEEEeeeeEEEecCcccCCCEEEEecCCCccc
Confidence 82 0 11 1112211 1 1257899999999999
Q ss_pred ccchHHHHHHHHhhcCCceEEEEeeCcccchHHHHHHHHHHcCCCCCCCCCCCceEEEEeEEEECCCCcceeeecCCeec
Q 010356 279 ASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVR 358 (512)
Q Consensus 279 ~~~DiA~~~~k~~~~~~d~~iyV~g~~q~~hf~~l~~~~~~~g~~~~~~~~~~~~~Hv~~g~V~~~~g~kmSkR~G~~v~ 358 (512)
.. |..++.. ..+.+|| |.|.|+....++...+.+++|+. .+.+.|+ ++|++.+|+|||||+|.. +
T Consensus 174 ~f---A~vVDD~-~~gIThV--iRG~D~l~~t~~q~~l~~aLg~~------~P~y~H~--pll~~~~g~kLSKR~~~~-~ 238 (272)
T TIGR03838 174 QL---AVVVDDA-AQGITHV--VRGADLLDSTPRQIYLQRLLGLP------PPRYLHL--PLVVNADGEKLSKQNGAP-A 238 (272)
T ss_pred cC---hhhhhcc-cCCCCEE--EeCHhhhhccHHHHHHHHHhCCC------CCeEEec--hhhhCCCCCeeeccCCcc-c
Confidence 85 5556665 4678888 49999987777666888999985 3678998 668889999999999964 5
Q ss_pred HHHH
Q 010356 359 LVDL 362 (512)
Q Consensus 359 l~dl 362 (512)
++++
T Consensus 239 i~~~ 242 (272)
T TIGR03838 239 LDLS 242 (272)
T ss_pred hhcC
Confidence 5543
No 80
>PF05746 DALR_1: DALR anticodon binding domain; InterPro: IPR008909 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This all alpha helical domain is the anticodon binding domain of Arginyl tRNA synthetase. This domain is known as the DALR domain after characteristic conserved amino acids [].; GO: 0004814 arginine-tRNA ligase activity, 0005524 ATP binding, 0006420 arginyl-tRNA aminoacylation; PDB: 2ZUE_A 2ZUF_A 3FNR_A 1F7V_A 1F7U_A 1BS2_A 1IQ0_A.
Probab=99.56 E-value=4.9e-15 Score=129.03 Aligned_cols=82 Identities=35% Similarity=0.631 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHHHhhcCChhhhhhcCCCCCCCHHHHHHHHHHHhhHHHHHHHHHhcChHHHHHHHHHHHHHHhcchhccc
Q 010356 431 LLYAHARICSIIRKSGKDIEELKKTGSLVLDHADERALGLHLLHFSEVIEEALTNLLPNVVCEYLYNLSEYFTRFYSNCQ 510 (512)
Q Consensus 431 lqY~~aR~~sil~k~~~~~~~~~~~~~~~l~~~~e~~L~~~l~~~~~~v~~a~~~~~p~~l~~yl~~La~~fn~fY~~~~ 510 (512)
|||||+|++||++|++.............+.+++|++|+..+.+||+++++++++++|+.+|+||++||..||+||++|+
T Consensus 1 v~Ya~aRi~sIl~k~~~~~~~~~~~~~~~~~~~~e~~L~~~l~~~~~~l~~a~~~~~p~~l~~yL~~La~~f~~fy~~~~ 80 (119)
T PF05746_consen 1 VQYAYARISSILRKAEESGINDEYDDDFLLEEEEERELLKQLARFPDVLEKAAKDLEPHKLCDYLYELAQAFNSFYDNVR 80 (119)
T ss_dssp HHHHHHHHHHHHHHCTCTTCCCCHCCHHHS-SHHHHHHHHHHCTHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHHS-
T ss_pred ChHHHHHHHHHHHcCCCcCCccccchhhhcCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 79999999999999975421100001111358899999999999999999999999999999999999999999999999
Q ss_pred CC
Q 010356 511 VQ 512 (512)
Q Consensus 511 vl 512 (512)
|+
T Consensus 81 I~ 82 (119)
T PF05746_consen 81 IL 82 (119)
T ss_dssp ST
T ss_pred cc
Confidence 85
No 81
>PRK05710 glutamyl-Q tRNA(Asp) synthetase; Reviewed
Probab=99.54 E-value=6.5e-14 Score=139.65 Aligned_cols=186 Identities=19% Similarity=0.171 Sum_probs=129.2
Q ss_pred EeeCCCCCCCCcccchhhhhHHHHHHHHHHHCCCeEEEeeccCccchHHHHHHHHHHhhCCCCCccCcccHHHHHHHHHH
Q 010356 90 DFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQEFYRR 169 (512)
Q Consensus 90 e~~spNp~~~lHvGH~R~~iiGD~lar~l~~~G~~V~~~~~i~D~G~qi~~l~~~~~~~~~~~~~~~~~~i~~l~~~y~~ 169 (512)
-=..|+|||+|||||+|++++-...||-. .|-=+.| |.|... .
T Consensus 8 ~RFAPSPTG~LHlG~~rtAL~n~l~Ar~~--~G~~iLR---iEDtD~---------------------~----------- 50 (299)
T PRK05710 8 GRFAPSPSGPLHFGSLVAALGSWLDARAH--GGRWLLR---IEDIDP---------------------P----------- 50 (299)
T ss_pred EEeCcCCCCcccHHHHHHHHHHHHHHHHc--CCEEEEE---ECcCCC---------------------C-----------
Confidence 36689999999999999999988888754 2433333 334110 0
Q ss_pred HhcccCCChHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHcCCeEee--eccccccCchHHHHHHHHhCC
Q 010356 170 SKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEE--KGESFYNPYIPGVIDELSKQG 247 (512)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~L~I~f~~--~~es~~~~~v~~~~~~L~~~g 247 (512)
+....+.+.+.++++.||+..|. ...|.+.+...+++++|.++|
T Consensus 51 ----------------------------------R~~~~~~~~I~~dL~wlGl~wDe~~~~QS~r~~~Y~~~~~~L~~~G 96 (299)
T PRK05710 51 ----------------------------------REVPGAADAILADLEWLGLHWDGPVLYQSQRHDAYRAALDRLRAQG 96 (299)
T ss_pred ----------------------------------ccchHHHHHHHHHHHHCCCCCCCCceEeeccHHHHHHHHHHHHHCC
Confidence 00112335667799999999862 235666666788899999999
Q ss_pred Ceee-----------e----------Cc-------------eEEEEec-----------C--------CCCCeEEEecCC
Q 010356 248 LVEE-----------S----------QG-------------ARVIFIE-----------G--------VNIPLIIVKSDG 274 (512)
Q Consensus 248 ~~~~-----------~----------dG-------------a~~~~~~-----------g--------~~~d~vl~ksDG 274 (512)
.+|. . +| ++-++++ | .-.|+||.|+||
T Consensus 97 ~aY~C~Ctr~el~~~~~~~~~~~~~y~g~cr~~~~~~~~~~~iRlk~~~~~~~~~D~~~G~~~~~~~~~~~D~Vi~R~dg 176 (299)
T PRK05710 97 LVYPCFCSRKEIAAAAPAPPDGGGIYPGTCRDLLHGPRNPPAWRLRVPDAVIAFDDRLQGRQHQDLALAVGDFVLRRADG 176 (299)
T ss_pred CceecCCCHHHHHHHhhhccCCCCcCCCccccCCccccCCceEEEEcCCCceEEEEecceeEeeCCCCCCCCEEEEecCC
Confidence 8882 0 11 1111221 1 125899999999
Q ss_pred ccccccchHHHHHHHHhhcCCceEEEEeeCcccchHHHHHHHHHHcCCCCCCCCCCCceEEEEeEEEECCCCcceeeecC
Q 010356 275 GFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFS 354 (512)
Q Consensus 275 ~~~Y~~~DiA~~~~k~~~~~~d~~iyV~g~~q~~hf~~l~~~~~~~g~~~~~~~~~~~~~Hv~~g~V~~~~g~kmSkR~G 354 (512)
.|+|.. |..++.. ..+.+|| |.|.|+...-++...+.+++|+. .+.+.|+ .+|.+.+|+|||||.|
T Consensus 177 ~ptY~l---A~vVDD~-~~gIThV--vRG~D~l~~t~~Q~~l~~aLg~~------~P~y~H~--pll~~~~g~kLSKr~~ 242 (299)
T PRK05710 177 LFAYQL---AVVVDDA-LQGVTHV--VRGADLLDSTPRQIYLQQLLGLP------TPRYLHL--PLVLNADGQKLSKQNG 242 (299)
T ss_pred Cccccc---hhHHhcc-cCCCCEE--EeChhhhhcCHHHHHHHHHcCCC------CCeEEEe--ecccCCCCCcccccCC
Confidence 999985 5556665 4678888 49999977666666788999995 4788998 5688899999999998
Q ss_pred CeecHHH
Q 010356 355 EVVRLVD 361 (512)
Q Consensus 355 ~~v~l~d 361 (512)
.. ++++
T Consensus 243 ~~-~i~~ 248 (299)
T PRK05710 243 AP-ALDA 248 (299)
T ss_pred cc-chhh
Confidence 65 5554
No 82
>KOG0432 consensus Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.52 E-value=5.7e-12 Score=136.50 Aligned_cols=136 Identities=21% Similarity=0.296 Sum_probs=92.7
Q ss_pred CCceEEEEeeCCCCCCCCcccchhhhhHHHHHHHHHHHCCCeEEEeeccCccchHHHHHHHHHHhhCCCCCccCcccHHH
Q 010356 83 RVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGE 162 (512)
Q Consensus 83 ~~~~v~Ve~~spNp~~~lHvGH~R~~iiGD~lar~l~~~G~~V~~~~~i~D~G~qi~~l~~~~~~~~~~~~~~~~~~i~~ 162 (512)
.+...+|--.-||+||.|||||+-+..|-|+|+|+-|+.||.|..+=..+-+|--...+......+.+. ...+.+
T Consensus 73 ~~~~f~i~~PPPNVTG~LHiGHALt~aiqD~i~R~~rm~G~~vlw~PG~DHAGIATQ~VVEK~l~~~~~---~~Rh~l-- 147 (995)
T KOG0432|consen 73 PGGVFVIPLPPPNVTGSLHIGHALTVAIQDALARYNRMHGYQVLWVPGTDHAGIATQVVVEKQLAREGG---KTRHDL-- 147 (995)
T ss_pred CCCcceeecCCCCcccccchhHHHHHHHHHHHHHHHHhcCCeeeecCCccccchhHHHHHHHHHHHhcC---cchhhc--
Confidence 356777889999999999999999999999999999999999999998888874333222111111000 000000
Q ss_pred HHHHHHHHhcccCCChHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHcCCeEeeecccc-----ccCchH
Q 010356 163 LQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKGESF-----YNPYIP 237 (512)
Q Consensus 163 l~~~y~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~L~I~f~~~~es~-----~~~~v~ 237 (512)
. .++|. .+.|+ ..+..-..+.+.+++||.++||..|-+ ....|.
T Consensus 148 ------------g-Re~F~-----------------~~vw~-Wk~e~g~~I~~Qlk~lGas~DW~re~fTmD~~~s~AV~ 196 (995)
T KOG0432|consen 148 ------------G-REEFL-----------------KEVWE-WKEEYGGRIYNQLKRLGASLDWDREAFTMDPKLSRAVT 196 (995)
T ss_pred ------------C-HHHHH-----------------HHHHH-HHHHhCccHHHHHHHhcCcccccHhhcccCHHHHHHHH
Confidence 0 01111 12332 244555677889999999999876532 234688
Q ss_pred HHHHHHHhCCCeeeeCc
Q 010356 238 GVIDELSKQGLVEESQG 254 (512)
Q Consensus 238 ~~~~~L~~~g~~~~~dG 254 (512)
+.+-+|.++|++|....
T Consensus 197 eAFvrL~eeglIyR~~r 213 (995)
T KOG0432|consen 197 EAFVRLHEEGLIYRANR 213 (995)
T ss_pred HHHHHHHhcCceEecCc
Confidence 99999999999997544
No 83
>KOG1247 consensus Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.51 E-value=2.1e-13 Score=136.44 Aligned_cols=335 Identities=15% Similarity=0.149 Sum_probs=215.3
Q ss_pred CCCceEEEEeeCCCCCCCCcccchh-hhhHHHHHHHHHHHCCCeEEEeeccCccchHHHHHHHHHHhhCCCCCccCcccH
Q 010356 82 LRVKKAVVDFSSPNIAKEMHVGHLR-STIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAI 160 (512)
Q Consensus 82 ~~~~~v~Ve~~spNp~~~lHvGH~R-~~iiGD~lar~l~~~G~~V~~~~~i~D~G~qi~~l~~~~~~~~~~~~~~~~~~i 160 (512)
.+...++|.-+-|.++..+|+|+.= +...+|+.||+.+..|++..++...+..|+....-+
T Consensus 11 ~n~rnilitsalpyvnnvphlgNIIg~vlsAdV~Aryc~~r~~~~~yicGTDEYgtatetka------------------ 72 (567)
T KOG1247|consen 11 PNERNILITSALPYVNNVPHLGNIIGSVLSADVFARYCPLRGPNTLYICGTDEYGTATETKA------------------ 72 (567)
T ss_pred CCccceeeecccceecccccccceeeEEeehhhhcccccCCCCceEEeccccccchhhHHHH------------------
Confidence 3456799999999999999999976 555599999999999999999999888887543211
Q ss_pred HHHHHHHHHHhcccCCChHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHcCCeEeeeccc---cccCchH
Q 010356 161 GELQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKGES---FYNPYIP 237 (512)
Q Consensus 161 ~~l~~~y~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~L~I~f~~~~es---~~~~~v~ 237 (512)
+|+|- ..+++|+.+...++..|+.++|.||+++.+ ...+..+
T Consensus 73 ------------------------------leeg~-----tP~elcdKyh~ihk~vy~Wf~IdfD~fgrtTT~~qT~i~Q 117 (567)
T KOG1247|consen 73 ------------------------------LEEGL-----TPQELCDKYHGIHKVVYDWFKIDFDEFGRTTTKTQTEICQ 117 (567)
T ss_pred ------------------------------HHccC-----CHHHHHHhcchhHHHHHHhhcccccccCcccCcchhHHHH
Confidence 11110 115678888889999999999999988752 2356789
Q ss_pred HHHHHHHhCCCeeee--CceEEEEec---------------------CC---------------CCCeEEEecCCcccc-
Q 010356 238 GVIDELSKQGLVEES--QGARVIFIE---------------------GV---------------NIPLIIVKSDGGFNY- 278 (512)
Q Consensus 238 ~~~~~L~~~g~~~~~--dGa~~~~~~---------------------g~---------------~~d~vl~ksDG~~~Y- 278 (512)
.++.+|.++|+.-+. +.-.|-.+. |+ ++.+.+.++ +|+|
T Consensus 118 ~iF~kl~~ng~~se~tv~qLyC~vc~~fladr~veg~cp~C~yd~ARGDqcd~cG~l~N~~el~~pkc~ic~~--~p~~~ 195 (567)
T KOG1247|consen 118 DIFSKLYDNGYLSEQTVKQLYCEVCDTFLADRFVEGKCPFCGYDDARGDQCDKCGKLVNAAELKIPKCKICQA--GPVVR 195 (567)
T ss_pred HHhhchhhcCCcccceeeeEEehhhcccccchhhhccCCCCCCccccchhhhhhhhhcCHHHhcCcchheecc--CCeee
Confidence 999999999987653 222222110 11 011111111 1111
Q ss_pred -------------------------------------------------ccchHHHHH-HHHhhcCCceEEEEeeCcccc
Q 010356 279 -------------------------------------------------ASTDLAALW-YRLNEEKAEWIIYVTDVGQQL 308 (512)
Q Consensus 279 -------------------------------------------------~~~DiA~~~-~k~~~~~~d~~iyV~g~~q~~ 308 (512)
+|||+-|-. --++ ..-|+++|||-+...+
T Consensus 196 ~t~h~Fl~L~kl~~~lee~~~~~~~~~~WS~Na~~it~sWlk~gl~pRCiTRDLkWGtpVPle-~fk~KVfYVWFDA~IG 274 (567)
T KOG1247|consen 196 QTQHLFLSLDKLEPRLEEWLRRTLVEGDWSQNAQNITRSWLKDGLKPRCITRDLKWGTPVPLE-KFKDKVFYVWFDAPIG 274 (567)
T ss_pred eeeEEEEEhHHhHHHHHHHHHhccccCCCccchHHHHHHHHHccccccccccccccCCCcChh-hhcccEEEEEEcCcce
Confidence 122221100 0001 1237999999776554
Q ss_pred hHHH----------------HHHHHHHcCCCCCCCCC---------------CCceEEEE-eEEEECCCCcceeeecCCe
Q 010356 309 HFDM----------------VFSAAKRAGWLSADDST---------------YPKASHVG-FGLVLGEDGKRLRTRFSEV 356 (512)
Q Consensus 309 hf~~----------------l~~~~~~~g~~~~~~~~---------------~~~~~Hv~-~g~V~~~~g~kmSkR~G~~ 356 (512)
+..- .....+.||...- ++ -....|++ -+.++-++| |+|||+|-.
T Consensus 275 Ylsit~~yt~ew~kWwknpE~v~LyqFmgKDNV--pFHtviFP~s~lgt~en~t~v~~l~aTeYLnyE~g-KFSKSrgvG 351 (567)
T KOG1247|consen 275 YLSITKNYTDEWEKWWKNPENVELYQFMGKDNV--PFHTVIFPCSQLGTEENYTVVHHLSATEYLNYEDG-KFSKSRGVG 351 (567)
T ss_pred EEEeehhhhHHHHHHhcCHhhhhHHHHhccCCC--cceeeecchhhhcCCCCchhheeechhhhhccccC-ccccccccc
Confidence 3221 1133455554210 00 00011111 011233344 799999999
Q ss_pred ecHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhchhhHHHHhhccCC-CCCccccccccccc-cCCchHHHHHH
Q 010356 357 VRLVDLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNR-LTNYTFSFDQMLND-KGNTAVYLLYA 434 (512)
Q Consensus 357 v~l~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~airy~~L~~~~-~~~~~Fd~~~~~~~-~~~~g~ylqY~ 434 (512)
|.=.++.+.+ ++++.-||++|+.+| .+|..|+|+++... +++..+-+++-
T Consensus 352 vFG~~aqd~g----------------------------i~~~vWRyYLl~~RPEssDs~Fsw~df~~k~nseLl~NLGNF 403 (567)
T KOG1247|consen 352 VFGNDAQDTG----------------------------IPASVWRYYLLYIRPESSDSAFSWDDFVLKVNSELLNNLGNF 403 (567)
T ss_pred ccccccccCC----------------------------CCHHHHHHHHhhccCcccCCcCcHHHHHHHhhHHHHHHHHHH
Confidence 9887776653 788999999999988 67999999998763 44333333333
Q ss_pred HHHHHHHHHhhcCChhhhhhcCCCCCCCHHHHHHHHHHHhhHHHHHHHHHhcChHHHHHHHHHHHHHHhcchhcc
Q 010356 435 HARICSIIRKSGKDIEELKKTGSLVLDHADERALGLHLLHFSEVIEEALTNLLPNVVCEYLYNLSEYFTRFYSNC 509 (512)
Q Consensus 435 ~aR~~sil~k~~~~~~~~~~~~~~~l~~~~e~~L~~~l~~~~~~v~~a~~~~~p~~l~~yl~~La~~fn~fY~~~ 509 (512)
.+|+.+.......+. +|. ..+. .....|+..+..+-....++++.-.....++-+|+++...|.|..+.
T Consensus 404 vNR~l~fv~~~~~g~--Vp~---~~~~-~~~~~~~~dv~~~~~~y~~~me~vklr~~l~~~m~is~~GNqylQ~~ 472 (567)
T KOG1247|consen 404 VNRVLKFVAAKYNGV--VPE---MELT-SGDKKLLEDVNELLAKYVAAMEKVKLREALKTAMEISRRGNQYLQEN 472 (567)
T ss_pred HHHHHHHHHHhhCCc--ccc---eeec-CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhcc
Confidence 378888776443332 122 1222 23667888888888888889999999999999999999999998654
No 84
>KOG1149 consensus Glutamyl-tRNA synthetase (mitochondrial) [Translation, ribosomal structure and biogenesis]
Probab=99.44 E-value=7.7e-13 Score=133.30 Aligned_cols=150 Identities=15% Similarity=0.142 Sum_probs=103.2
Q ss_pred ceEEEEecCCCCCeEEEecCCccccccchHHHHHHHHhhcCCceEEEEeeCcccchHHHHHHHHHHcCCCCCCCCCCCce
Q 010356 254 GARVIFIEGVNIPLIIVKSDGGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKA 333 (512)
Q Consensus 254 Ga~~~~~~g~~~d~vl~ksDG~~~Y~~~DiA~~~~k~~~~~~d~~iyV~g~~q~~hf~~l~~~~~~~g~~~~~~~~~~~~ 333 (512)
|.++..++....|.|+.||||-|||.... ..+.. ..+..||| .|.++-.-......+.+|+||. .+++
T Consensus 201 G~v~~~~d~~~gD~VvmKSDgfPTYHfAn---VVDDh-~M~IsHVi--RGeEWlpST~KH~lLYkAfgW~------pPkF 268 (524)
T KOG1149|consen 201 GKVNHNVDSNEGDPVVMKSDGFPTYHFAN---VVDDH-LMGISHVI--RGEEWLPSTLKHILLYKAFGWQ------PPKF 268 (524)
T ss_pred hhhhccccccCCCcEEEecCCCcceeeee---eecch-hcchhhee--ecchhccccHHHHHHHHHhCCC------CCce
Confidence 33443333335789999999999998643 33433 24667885 8999865444445778999996 3789
Q ss_pred EEEEeEEEECCCCcceeeecCCeecHHHHHHHHH--HHHHHHHHHhcCCCCCCHHHHHHHHHhhch-hhHHHHhhccCCC
Q 010356 334 SHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAK--NRSKAVLIERGKDKEWTEEELEQTAEAVGY-GAAKYFDLKNNRL 410 (512)
Q Consensus 334 ~Hv~~g~V~~~~g~kmSkR~G~~v~l~dll~~~~--~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~-~airy~~L~~~~~ 410 (512)
.|++ ++.+++|+|+|||.|.+ ++.++.++++ +...|++..-| |+..+..+ =+.. +-+--|.+.+...
T Consensus 269 aHlp--Ll~n~d~sKLSKRqgD~-~vs~~~e~G~LPeallN~ial~G----wg~~~~~~---f~sl~eLieqF~i~~ltk 338 (524)
T KOG1149|consen 269 AHLP--LLLNPDGSKLSKRQGDA-SVSHYREQGYLPEALLNYIALLG----WGFRTENE---FFSLEELIEQFSIERLTK 338 (524)
T ss_pred eeee--eeecCCcchhhhhcCcc-hHHHHHHcCCChHHHHHHHHHcC----CCcccccc---cccHHHHHHHhchhhhcc
Confidence 9995 57789999999999976 8999999988 66888887643 32211110 0121 2344567777777
Q ss_pred CCccccccccccccC
Q 010356 411 TNYTFSFDQMLNDKG 425 (512)
Q Consensus 411 ~~~~Fd~~~~~~~~~ 425 (512)
++..+|.+++..+|+
T Consensus 339 ~~a~ld~ekL~~~Nr 353 (524)
T KOG1149|consen 339 SNAILDSEKLRFLNR 353 (524)
T ss_pred cccccCHHHHHHHHH
Confidence 888888888776654
No 85
>PLN03233 putative glutamate-tRNA ligase; Provisional
Probab=99.44 E-value=6.3e-13 Score=140.97 Aligned_cols=234 Identities=17% Similarity=0.154 Sum_probs=145.1
Q ss_pred ceEEEEeeCCCCCCCCcccchhhhhHHHHHHHHHHHCCCeEEEeeccCccchHHHHHHHHHHhhCCCCCccCcccHHHHH
Q 010356 85 KKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQ 164 (512)
Q Consensus 85 ~~v~Ve~~spNp~~~lHvGH~R~~iiGD~lar~l~~~G~~V~~~~~i~D~G~qi~~l~~~~~~~~~~~~~~~~~~i~~l~ 164 (512)
++|+ -=-.|+|||+|||||+|++++-..+||- +.|-=+.| ++|.
T Consensus 10 g~v~-tRFAPsPtG~LHiGharaAlln~l~Ar~--~gG~~iLR---iEDT------------------------------ 53 (523)
T PLN03233 10 GQIV-TRFPPEPSGYLHIGHAKAALLNDYYARR--YKGRLILR---FDDT------------------------------ 53 (523)
T ss_pred CeEE-EeeCCCCCCcccHHHHHHHHHHHHHHHH--hCCEEEEE---ECCC------------------------------
Confidence 3454 4678999999999999999999999985 45655555 3331
Q ss_pred HHHHHHhcccCCChHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHcCCeEee-eccccccCchHHHHHHH
Q 010356 165 EFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEE-KGESFYNPYIPGVIDEL 243 (512)
Q Consensus 165 ~~y~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~L~I~f~~-~~es~~~~~v~~~~~~L 243 (512)
||+ +-...+.+.+.++++.||+..|. ...|.|.+...+..++|
T Consensus 54 ------------Dp~------------------------R~~~e~~~~I~~dL~WLGl~wD~~~~qSdr~~~y~~~a~~L 97 (523)
T PLN03233 54 ------------NPS------------------------KEKAEFEESIIEDLGKIEIKPDSVSFTSDYFEPIRCYAIIL 97 (523)
T ss_pred ------------CCC------------------------ccchHHHHHHHHHHHHhCCCCCCCccccccHHHHHHHHHHH
Confidence 110 00122335566777888887752 23455556667777777
Q ss_pred HhCCCeee----------------------------------------eCceEEEEecCC-------CCCeEEEecCCcc
Q 010356 244 SKQGLVEE----------------------------------------SQGARVIFIEGV-------NIPLIIVKSDGGF 276 (512)
Q Consensus 244 ~~~g~~~~----------------------------------------~dGa~~~~~~g~-------~~d~vl~ksDG~~ 276 (512)
+++|.+|. .+|..++++..+ -.|.|+.|+||++
T Consensus 98 i~~G~AY~C~cs~eel~~~r~~~~~~~~R~~s~ee~l~~~~~m~~G~~~~~~~~lR~K~d~~~~n~~~~D~Vi~R~d~~~ 177 (523)
T PLN03233 98 IEEGLAYMDDTPQEEMKKERADRAESKHRNQSPEEALEMFKEMCSGKEEGGAWCLRAKIDMQSDNGTLRDPVLFRQNTTP 177 (523)
T ss_pred HHcCCeEecCCCHHHHHHHHhhhccCccccCCHHHHHHHHHHHhcccccCCCeEEEEeCcccCCCCCCcCCEEEEEcCCc
Confidence 77777763 123344444321 1478999999863
Q ss_pred c---------cccchHHHHHHHHhhcCCceEEEEeeCcccchHHHHHHHHHHcCCCCCCCCCCCceEEEEeEEEECCCCc
Q 010356 277 N---------YASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGK 347 (512)
Q Consensus 277 ~---------Y~~~DiA~~~~k~~~~~~d~~iyV~g~~q~~hf~~l~~~~~~~g~~~~~~~~~~~~~Hv~~g~V~~~~g~ 347 (512)
- |.+=|+|..+... ..+.+|+| .|.|+..+-++...+++++|+. .+.+ |. |+.+. ..|.
T Consensus 178 h~~~Gd~~~~~PtY~fA~~VDD~-l~gITHvi--Rg~E~~~~t~~q~~l~~aLg~~------~P~~-~~-f~rln-~~~~ 245 (523)
T PLN03233 178 HHRSGTAYKAYPTYDLACPIVDS-IEGVTHAL--RTTEYDDRDAQFFWIQKALGLR------RPRI-HA-FARMN-FMNT 245 (523)
T ss_pred ccccCCcccceeccCCceeeecc-ccCCCeEE--echhhhcCCHHHHHHHHHhCCC------CCee-ee-eEEEC-CCCC
Confidence 2 2222345445544 35778884 8999988877777888999984 3455 44 66655 6788
Q ss_pred ceeeecCCeecHHHHHHHHHH--------HHHHHHHHhcCCCCCCHHHHHHHHHhhchhhHHHHhhccCC-CCCcccccc
Q 010356 348 RLRTRFSEVVRLVDLLDEAKN--------RSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNR-LTNYTFSFD 418 (512)
Q Consensus 348 kmSkR~G~~v~l~dll~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~airy~~L~~~~-~~~~~Fd~~ 418 (512)
|||||+. ..|++++.. ....-+..|| +-++|||-|++..-. .++..++|+
T Consensus 246 kLSKR~l-----~~lV~~g~v~GWDDPRlpTi~~lrrrG----------------~~peAi~~f~~~~G~s~~~~~i~~~ 304 (523)
T PLN03233 246 VLSKRKL-----TWFVDNGHVTGWDDARFPTIRGISRRG----------------IDIDALKMFMCSQGASRRVVNLDWA 304 (523)
T ss_pred cccccCc-----hhhhccCcccCccCCchHhHHHHHHCC----------------CCHHHHHHHHHHhCCCCCCceecHH
Confidence 9999972 222222211 0122233333 567788888877643 567788888
Q ss_pred ccccc
Q 010356 419 QMLND 423 (512)
Q Consensus 419 ~~~~~ 423 (512)
.+-++
T Consensus 305 ~l~~~ 309 (523)
T PLN03233 305 KFWAE 309 (523)
T ss_pred HHHHH
Confidence 76544
No 86
>PTZ00402 glutamyl-tRNA synthetase; Provisional
Probab=99.42 E-value=1.5e-12 Score=139.50 Aligned_cols=233 Identities=17% Similarity=0.133 Sum_probs=148.3
Q ss_pred ceEEEEeeCCCCCCCCcccchhhhhHHHHHHHHHHHCCCeEEEeeccCccchHHHHHHHHHHhhCCCCCccCcccHHHHH
Q 010356 85 KKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQ 164 (512)
Q Consensus 85 ~~v~Ve~~spNp~~~lHvGH~R~~iiGD~lar~l~~~G~~V~~~~~i~D~G~qi~~l~~~~~~~~~~~~~~~~~~i~~l~ 164 (512)
.+|+. =-.|+|||+|||||+|++++-..+||- +.|-=+.| ++|..
T Consensus 51 ~~v~t-RFAPsPtGyLHIGharaAllN~l~Ar~--~gG~~iLR---iEDTD----------------------------- 95 (601)
T PTZ00402 51 GKVVT-RFPPEASGFLHIGHAKAALINSMLADK--YKGKLVFR---FDDTN----------------------------- 95 (601)
T ss_pred CeeEE-eeCCCCCCcccHHHHHHHHHHHHHHHH--hCCEEEEE---EcCCC-----------------------------
Confidence 44544 678999999999999999999999984 45655544 33311
Q ss_pred HHHHHHhcccCCChHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHcCCeEee--eccccccCchHHHHHH
Q 010356 165 EFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEE--KGESFYNPYIPGVIDE 242 (512)
Q Consensus 165 ~~y~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~L~I~f~~--~~es~~~~~v~~~~~~ 242 (512)
|. +....+.+.+.++++.||+..|. ...|.|.+...+.+++
T Consensus 96 -------------p~------------------------R~~~e~~d~IleDL~WLGl~wDe~~~~QSdr~d~y~e~a~~ 138 (601)
T PTZ00402 96 -------------PS------------------------KEKEHFEQAILDDLATLGVSWDVGPTYSSDYMDLMYEKAEE 138 (601)
T ss_pred -------------Cc------------------------ccCHHHHHHHHHHHHHCCCCCCCceeeccccHHHHHHHHHH
Confidence 10 00112335566677888887642 2346665666777777
Q ss_pred HHhCCCeeee----------------------------------------CceEEEEecC-------CCCCeEEEecC--
Q 010356 243 LSKQGLVEES----------------------------------------QGARVIFIEG-------VNIPLIIVKSD-- 273 (512)
Q Consensus 243 L~~~g~~~~~----------------------------------------dGa~~~~~~g-------~~~d~vl~ksD-- 273 (512)
|+++|.+|.. +|..+++..- .-.|.|+.|.+
T Consensus 139 Li~~G~AY~c~cs~eei~~~r~~g~p~~~R~~s~ee~l~~~~~m~~g~~~~~~~~lR~kid~~~~n~~~rD~Vl~R~~~~ 218 (601)
T PTZ00402 139 LIKKGLAYCDKTPREEMQKCRFDGVPTKYRDISVEETKRLWNEMKKGSAEGQETCLRAKISVDNENKAMRDPVIYRVNLT 218 (601)
T ss_pred HHHcCCEEEecCCHHHHHHHHhCCCCCCCCCCCHHHHHHHHHhccccccCCCceEEEEecccCCCCCCccCCEEEEEcCC
Confidence 7777777620 1222332210 11367777754
Q ss_pred ----------CccccccchHHHHHHHHhhcCCceEEEEeeCcccchHHHHHHHHHHcCCCCCCCCCCCceEEEEeEEEEC
Q 010356 274 ----------GGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLG 343 (512)
Q Consensus 274 ----------G~~~Y~~~DiA~~~~k~~~~~~d~~iyV~g~~q~~hf~~l~~~~~~~g~~~~~~~~~~~~~Hv~~g~V~~ 343 (512)
|-|+|. +|..++.. ..+.+|+| .|.|+..+-++...+++++|+. .+.+.|+ ++ ++
T Consensus 219 ~h~rtGdk~dgyPtYd---fA~vVDD~-l~gITHvl--Rg~E~l~~tp~q~~L~~aLg~~------~P~~~h~--~r-Ln 283 (601)
T PTZ00402 219 PHARQGTKYKAYPTYD---FCCPIIDS-VEGVTHAL--RTNEYHDRNDQYYWFCDALGIR------KPIVEDF--SR-LN 283 (601)
T ss_pred cccccCCCCceeeccC---cceeeEcc-ccCCceEe--echhhhhCcHHHHHHHHHhCCC------CceEEEE--ee-Ec
Confidence 556664 44444443 35778884 8999988887777888999984 4678888 45 45
Q ss_pred CCCcceeeecCCeecHHHHHHHHH--------HHHHHHHHHhcCCCCCCHHHHHHHHHhhchhhHHHHhhcc-CCCCCcc
Q 010356 344 EDGKRLRTRFSEVVRLVDLLDEAK--------NRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKN-NRLTNYT 414 (512)
Q Consensus 344 ~~g~kmSkR~G~~v~l~dll~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~airy~~L~~-~~~~~~~ 414 (512)
.+|.|||||++ ..+++++. ....+.+..|| +.+++||=|+... ...++..
T Consensus 284 ~~g~kLSKRkl-----~~lv~~g~v~GWdDprlpTi~glrRrG----------------~~peai~~f~~~~Gvsk~~~~ 342 (601)
T PTZ00402 284 MEYSVMSKRKL-----TQLVDTHVVDGWDDPRFPTVRALVRRG----------------LKMEALRQFVQEQGMSKTVNF 342 (601)
T ss_pred CCCCcccccCC-----hhhhhcCcccccCCCccHhHHHHHHcC----------------CCHHHHHHHHHHhCCCCCCcc
Confidence 88999999987 44555432 11233333333 4566777666655 4578899
Q ss_pred ccccccccccC
Q 010356 415 FSFDQMLNDKG 425 (512)
Q Consensus 415 Fd~~~~~~~~~ 425 (512)
|||+.+.+++.
T Consensus 343 ~d~~~L~~~nr 353 (601)
T PTZ00402 343 MEWSKLWYFNT 353 (601)
T ss_pred cCHHHHHHHHH
Confidence 99999877654
No 87
>TIGR00463 gltX_arch glutamyl-tRNA synthetase, archaeal and eukaryotic family. The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the eukaryotic cytosolic and archaeal forms of the enzyme. In some eukaryotes, the glutamyl-tRNA synthetase is part of a longer, multifunctional aminoacyl-tRNA ligase. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu).
Probab=99.41 E-value=1e-12 Score=140.77 Aligned_cols=239 Identities=15% Similarity=0.068 Sum_probs=148.2
Q ss_pred ceEEEEeeCCCCCCCCcccchhhhhHHHHHHHHHHHCCCeEEEeeccCccchHHHHHHHHHHhhCCCCCccCcccHHHHH
Q 010356 85 KKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQ 164 (512)
Q Consensus 85 ~~v~Ve~~spNp~~~lHvGH~R~~iiGD~lar~l~~~G~~V~~~~~i~D~G~qi~~l~~~~~~~~~~~~~~~~~~i~~l~ 164 (512)
.+| +-=..|+|||+|||||+|++++-+.+|| .|+...+--++|... -.
T Consensus 92 ~~v-vtRFaPsPtG~LHiGharaalln~~~Ar-----~~~G~~iLRidDTDp-----------------------~R--- 139 (560)
T TIGR00463 92 GEV-VMRFAPNPSGPLHIGHARAAILNQYFAK-----KYKGKLIIRFDDTDP-----------------------RR--- 139 (560)
T ss_pred Cee-EEEeCCCCCCCccHHHHHHHHHHHHHHH-----hcCCEEEEEeCcCCc-----------------------cc---
Confidence 345 4477899999999999999999999997 334444444555210 00
Q ss_pred HHHHHHhcccCCChHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHcCCeEe-eeccccccCchHHHHHHH
Q 010356 165 EFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLE-EKGESFYNPYIPGVIDEL 243 (512)
Q Consensus 165 ~~y~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~L~I~f~-~~~es~~~~~v~~~~~~L 243 (512)
. ...+.+.+.++++.||+.+| ....|.|.+...+++++|
T Consensus 140 -----------~-----------------------------~~e~~~~I~edL~wLGi~~d~~~~qSd~~~~y~~~a~~L 179 (560)
T TIGR00463 140 -----------V-----------------------------KPEAYDMILEDLDWLGVKGDEVVYQSDRIEEYYDYCRKL 179 (560)
T ss_pred -----------c-----------------------------cHHHHHHHHHHHHHcCCCCCccccccccHHHHHHHHHHH
Confidence 0 11234567789999999985 334577777888999999
Q ss_pred HhCCCeeee----------------------------------------CceEEEEecC-------CCCCeEEEecCCcc
Q 010356 244 SKQGLVEES----------------------------------------QGARVIFIEG-------VNIPLIIVKSDGGF 276 (512)
Q Consensus 244 ~~~g~~~~~----------------------------------------dGa~~~~~~g-------~~~d~vl~ksDG~~ 276 (512)
+++|++|.. +|..++++.- .-.|.|+.|.++++
T Consensus 180 i~~G~AY~C~cs~eei~~~r~~g~~~~cR~~s~eenl~~fe~m~~g~~~~~~~~lR~K~d~~~~n~~~rD~V~~R~~~~~ 259 (560)
T TIGR00463 180 IEMGKAYVCDCPPEEFRELRNDGVACACRDRSVEENLEIWEEMLNGTEEGGKVVVRAKTDYKHKNPAIRDWVIFRINKTP 259 (560)
T ss_pred HHcCCceeecCCHHHHHHHHhCCCCCCccCCCHHHHHHHHHHHhcccccCCCeEEEEECCCcCCCccccCcEEEEecCCC
Confidence 999988831 1222333321 11467888887653
Q ss_pred c---------cccchHHHHHHHHhhcCCceEEEEeeCcccchHHHHHHHHHHcCCCCCCCCCCCceEEEEeEEEECCCCc
Q 010356 277 N---------YASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGK 347 (512)
Q Consensus 277 ~---------Y~~~DiA~~~~k~~~~~~d~~iyV~g~~q~~hf~~l~~~~~~~g~~~~~~~~~~~~~Hv~~g~V~~~~g~ 347 (512)
. |.|=|+|..+... ..+.+|+| .|.|+...-.+...+..++|+. .+.+.|. +++.+.+|.
T Consensus 260 h~~~Gd~~~~~PtYdfA~~VDD~-l~gITHvi--Rg~E~~~nT~rq~yl~~~lg~~------~P~~~h~--~~l~~~~~~ 328 (560)
T TIGR00463 260 HPRTGDKYKVYPTMDFSVPIDDH-LLGVTHVL--RGKDHIDNERKQQYIYMYFGWE------LPEFIHW--GRLKINDVR 328 (560)
T ss_pred ccccCCEEEEEeccccceEeecc-cCCCCeEE--echhhhcCCHHHHHHHHHcCCC------CCeEEEE--cceecCCCc
Confidence 2 3344455545544 35778884 8888866444444556778884 3677888 568878888
Q ss_pred ceeeecCCeecHHH-HH---HHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhchhhHHHHhhccCC-CCCcccccccccc
Q 010356 348 RLRTRFSEVVRLVD-LL---DEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNR-LTNYTFSFDQMLN 422 (512)
Q Consensus 348 kmSkR~G~~v~l~d-ll---~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~airy~~L~~~~-~~~~~Fd~~~~~~ 422 (512)
|+|||+.--. +.+ .+ +.-.......+..|| +.++|||-|++..-. .++..++|+.+-+
T Consensus 329 kLskk~k~~~-l~~g~~~gWdDPr~~ti~~lrrrG----------------~~peAi~~f~~~~G~s~~~~~i~~~~l~~ 391 (560)
T TIGR00463 329 TLSTSSKLKG-IVRGDYSGWDDPRLPTLRAVRRRG----------------ITPEAIRNFMLSIGVKRNDVNLSWKNIYA 391 (560)
T ss_pred Eecchhhhhh-hhccCccCcCCccHHHHHHHHHCC----------------CCHHHHHHHHHHhCCCCCCceeeHHHHHH
Confidence 9998763210 000 00 000011223333443 567888888887754 5677888887654
Q ss_pred c
Q 010356 423 D 423 (512)
Q Consensus 423 ~ 423 (512)
+
T Consensus 392 ~ 392 (560)
T TIGR00463 392 F 392 (560)
T ss_pred H
Confidence 4
No 88
>cd00807 GlnRS_core catalytic core domain of glutaminyl-tRNA synthetase. Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Gln to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. GlnRS contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.
Probab=99.40 E-value=1e-12 Score=126.46 Aligned_cols=218 Identities=16% Similarity=0.077 Sum_probs=137.6
Q ss_pred eeCCCCCCCCcccchhhhhHHHHHHHHHHHCCCeEEEeeccCccchHHHHHHHHHHhhCCCCCccCcccHHHHHHHHHHH
Q 010356 91 FSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQEFYRRS 170 (512)
Q Consensus 91 ~~spNp~~~lHvGH~R~~iiGD~lar~l~~~G~~V~~~~~i~D~G~qi~~l~~~~~~~~~~~~~~~~~~i~~l~~~y~~~ 170 (512)
=-.|+|||+||+||+|++++....||-. .|-=+.| |.|.
T Consensus 5 RFAPsPtG~lHlG~~~~al~~~l~Ar~~--~G~~iLR---ieDt------------------------------------ 43 (238)
T cd00807 5 RFPPEPNGYLHIGHAKAILLNFGYAKKY--GGRCNLR---FDDT------------------------------------ 43 (238)
T ss_pred ecCCCCCCcccHHHHHHHHHHHHHHHHh--CCEEEEE---ecCC------------------------------------
Confidence 4579999999999999999999999863 4554444 3331
Q ss_pred hcccCCChHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHcCCeEe-eeccccccCchHHHHHHHHhCCCe
Q 010356 171 KNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLE-EKGESFYNPYIPGVIDELSKQGLV 249 (512)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~L~I~f~-~~~es~~~~~v~~~~~~L~~~g~~ 249 (512)
|+. +....+.+.+.++++.||+..| ....|.+.+...+++++|.++|.+
T Consensus 44 ------D~~------------------------R~~~~~~~~I~~dL~wlGl~wD~~~~QS~r~~~Y~~~~~~L~~~g~a 93 (238)
T cd00807 44 ------NPE------------------------KEEEEYVDSIKEDVKWLGIKPYKVTYASDYFDQLYEYAEQLIKKGKA 93 (238)
T ss_pred ------CCc------------------------ccchHHHHHHHHHHHHcCCCCCCceecccCHHHHHHHHHHHHHcCCe
Confidence 100 0112334567889999999986 223466666788999999999999
Q ss_pred eeeCceEEEEecCCCCCeEEEecCCccccccchHHHHHHHHhhcCCceEEEEeeCcccchHHHHHHHHHHcCCCCCCCCC
Q 010356 250 EESQGARVIFIEGVNIPLIIVKSDGGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDST 329 (512)
Q Consensus 250 ~~~dGa~~~~~~g~~~d~vl~ksDG~~~Y~~~DiA~~~~k~~~~~~d~~iyV~g~~q~~hf~~l~~~~~~~g~~~~~~~~ 329 (512)
|..- ..| .+.++ .|+|. +|..++.. ..+.+++ |.|.|+...-++...+.+++|+.+
T Consensus 94 Y~~~------~~~--~~~~i-----~ptY~---lA~vVDD~-~~gIThV--vRG~D~l~~t~~Q~~l~~aLg~~~----- 149 (238)
T cd00807 94 YVHH------RTG--DKWCI-----YPTYD---FAHPIVDS-IEGITHS--LCTLEFEDRRPSYYWLCDALRLYR----- 149 (238)
T ss_pred ecCC------CCC--CCEEE-----Eeccc---cceEeecc-ccCCCeE--EechhhhcCCHHHHHHHHHcCCCC-----
Confidence 9721 011 12222 36665 45555555 3678888 499999776666667889999842
Q ss_pred CCceEEEEeEEEECCCCcceeeecCCeecHHHHH----HHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhchhhHHHHhh
Q 010356 330 YPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLL----DEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDL 405 (512)
Q Consensus 330 ~~~~~Hv~~g~V~~~~g~kmSkR~G~~v~l~dll----~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~airy~~L 405 (512)
+.+.|. +.+ +.+|+|||||.|.. .+++.. +.........+..+| +-++|++-|+.
T Consensus 150 -P~~~~~--~hl-n~~g~kLSKR~~~~-~i~~g~~~~wddpr~~~~~~l~~~G----------------~~peal~~~l~ 208 (238)
T cd00807 150 -PHQWEF--SRL-NLTYTVMSKRKLLQ-LVDEGYVDGWDDPRLPTLRGLRRRG----------------VTPEAIRQFIL 208 (238)
T ss_pred -CceeEE--EEE-CCCCCCccCcCchh-ccccCCcccccCcchHHHHHHHHcC----------------CCHHHHHHHHH
Confidence 443333 344 58899999999632 111100 000000111122222 44677777777
Q ss_pred ccC-CCCCcccccccccccc
Q 010356 406 KNN-RLTNYTFSFDQMLNDK 424 (512)
Q Consensus 406 ~~~-~~~~~~Fd~~~~~~~~ 424 (512)
.-- ..++..|||+++.++|
T Consensus 209 ~lG~s~~~~~~~~~~l~~~n 228 (238)
T cd00807 209 RQGVSKADSTIDWDKLEACV 228 (238)
T ss_pred HhCCCCCCcccCHHHHHHHH
Confidence 553 5789999999886654
No 89
>smart00836 DALR_1 DALR anticodon binding domain. This all alpha helical domain is the anticodon binding domain of Arginyl tRNA synthetase. This domain is known as the DALR domain after characteristic conserved amino acids PUBMED:10447505.
Probab=99.37 E-value=1.1e-12 Score=114.71 Aligned_cols=82 Identities=40% Similarity=0.720 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHHHhhcCC---hhhhhhcCCCCCCCHHHHHHHHHHHhhHHHHHHHHHhcChHHHHHHHHHHHHHHhcchh
Q 010356 431 LLYAHARICSIIRKSGKD---IEELKKTGSLVLDHADERALGLHLLHFSEVIEEALTNLLPNVVCEYLYNLSEYFTRFYS 507 (512)
Q Consensus 431 lqY~~aR~~sil~k~~~~---~~~~~~~~~~~l~~~~e~~L~~~l~~~~~~v~~a~~~~~p~~l~~yl~~La~~fn~fY~ 507 (512)
+||+|+|++||++|++.. .+.....+...+.++.|++|+..+..||+++..++.+.+|+.+|+|+++|+..||+||+
T Consensus 1 iqY~~~Ri~nIl~k~~~~~~~~~~~~~~~~~l~~~~~E~~L~~~i~~~~~~i~~~~~~~~~~~l~~~l~~L~~~~~~fy~ 80 (122)
T smart00836 1 VQYAHARICSILRKAGEAGLTLPDIADADLSLLTEPEELALLRLLARFPEVLEAAAETLEPHRLANYLYDLASAFHSFYN 80 (122)
T ss_pred CcHHHHHHHHHHHHHHhcCCCccccccchhhhcCCHHHHHHHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHc
Confidence 599999999999998631 11101122234567899999999999999999999999999999999999999999999
Q ss_pred cccCC
Q 010356 508 NCQVQ 512 (512)
Q Consensus 508 ~~~vl 512 (512)
+|+|+
T Consensus 81 ~v~V~ 85 (122)
T smart00836 81 KCRVL 85 (122)
T ss_pred cCccc
Confidence 99985
No 90
>PLN02907 glutamate-tRNA ligase
Probab=99.36 E-value=3.8e-12 Score=141.26 Aligned_cols=237 Identities=15% Similarity=0.149 Sum_probs=150.2
Q ss_pred EEEeeCCCCCCCCcccchhhhhHHHHHHHHHHHCCCeEEEeeccCccchHHHHHHHHHHhhCCCCCccCcccHHHHHHHH
Q 010356 88 VVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQEFY 167 (512)
Q Consensus 88 ~Ve~~spNp~~~lHvGH~R~~iiGD~lar~l~~~G~~V~~~~~i~D~G~qi~~l~~~~~~~~~~~~~~~~~~i~~l~~~y 167 (512)
++-=-.|+|||+|||||+|++++...+|| ++.|-=+.| ++|.
T Consensus 214 v~tRFaPsPtG~LHiG~ar~al~n~~~Ar--~~~G~~iLR---~eDT--------------------------------- 255 (722)
T PLN02907 214 VCTRFPPEPSGYLHIGHAKAALLNQYFAR--RYKGKLIVR---FDDT--------------------------------- 255 (722)
T ss_pred eEEeeCCCCCCcccHHHHHHHHHHHHHHH--HhCCEEEEE---ecCC---------------------------------
Confidence 34577899999999999999999999999 455655555 2331
Q ss_pred HHHhcccCCChHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHcCCeEee-eccccccCchHHHHHHHHhC
Q 010356 168 RRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEE-KGESFYNPYIPGVIDELSKQ 246 (512)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~L~I~f~~-~~es~~~~~v~~~~~~L~~~ 246 (512)
||. +....+.+.+.++++.||+..|. ...|.|.+...+..++|+++
T Consensus 256 ---------dp~------------------------r~~~e~~~~I~~dl~wLG~~~d~~~~qS~r~~~y~~~a~~Li~~ 302 (722)
T PLN02907 256 ---------NPS------------------------KESDEFVENILKDIETLGIKYDAVTYTSDYFPQLMEMAEKLIKE 302 (722)
T ss_pred ---------CCC------------------------cCChHHHHHHHHHHHHcCCCCCCcccccccHHHHHHHHHHHHHc
Confidence 110 00122345667788888888752 33566666777888888888
Q ss_pred CCeeee----------------------------------------CceEEEEecC-------CCCCeEEEecCCccc--
Q 010356 247 GLVEES----------------------------------------QGARVIFIEG-------VNIPLIIVKSDGGFN-- 277 (512)
Q Consensus 247 g~~~~~----------------------------------------dGa~~~~~~g-------~~~d~vl~ksDG~~~-- 277 (512)
|.+|.. +|..++++.- .-.|.|+.|.+|++-
T Consensus 303 G~aY~~~~~~~~~~~~~~~~~~~~~R~~~~ee~~~~~~~m~~g~~~~~~~~lR~k~d~~~~n~~~~D~v~~R~~~~~h~~ 382 (722)
T PLN02907 303 GKAYVDDTPREQMRKERMDGIESKCRNNSVEENLRLWKEMIAGSERGLQCCVRGKLDMQDPNKSLRDPVYYRCNPTPHHR 382 (722)
T ss_pred CCeeecCCCHHHHHHHHhcCCCCCccCCCHHHHHHHHHHHhcccccCCCeEEEEEcccCCCCCCcccCEEEEecCCcccc
Confidence 888731 1122332221 113778899987432
Q ss_pred -------cccchHHHHHHHHhhcCCceEEEEeeCcccchHHHHHHHHHHcCCCCCCCCCCCceEEEEeEEEECCCCccee
Q 010356 278 -------YASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLR 350 (512)
Q Consensus 278 -------Y~~~DiA~~~~k~~~~~~d~~iyV~g~~q~~hf~~l~~~~~~~g~~~~~~~~~~~~~Hv~~g~V~~~~g~kmS 350 (512)
|.|=|+|..+... ..+.+|+| .|.|+..+-++...+++++|+.. +...| |+.+. .+|.+||
T Consensus 383 ~gd~~~~~PtY~fa~~vdD~-~~gIThvl--Rg~e~~~~t~~q~~l~~~lg~~~------p~~~~--f~~l~-~~~~~lS 450 (722)
T PLN02907 383 IGSKYKVYPTYDFACPFVDA-LEGVTHAL--RSSEYHDRNAQYYRILEDMGLRK------VHIWE--FSRLN-FVYTLLS 450 (722)
T ss_pred cCCccceeeccCCceEEEcc-cCCCceEe--ecHhhhhChHHHHHHHHHcCCCC------CeeEE--EEEEc-CCCcccc
Confidence 2222334433333 35677884 89999888777778889999842 33333 35554 6788999
Q ss_pred eecCCeecHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHh----hchhhHHHHhhccC-CCCCcccccccccccc
Q 010356 351 TRFSEVVRLVDLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEA----VGYGAAKYFDLKNN-RLTNYTFSFDQMLNDK 424 (512)
Q Consensus 351 kR~G~~v~l~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~----~~~~airy~~L~~~-~~~~~~Fd~~~~~~~~ 424 (512)
||+ +..+++++. -.+|++..+-.+... +-++||+=|++... ..++..|||+++.++|
T Consensus 451 KR~-----l~~~v~~g~------------v~Gwddpr~pt~~~~rrrG~~~eai~~f~~~~g~s~~~~~~~~~~l~~~n 512 (722)
T PLN02907 451 KRK-----LQWFVDNGK------------VEGWDDPRFPTVQGIVRRGLKIEALKQFILSQGASKNLNLMEWDKLWTIN 512 (722)
T ss_pred ccc-----hHhHhhcCc------------ccCCCCCCcccHHHHHHcCCCHHHHHHHHHHhCCCcCCccccHHHHHHHH
Confidence 998 566666542 224443222222222 56788888887765 4678899999887665
No 91
>PRK05347 glutaminyl-tRNA synthetase; Provisional
Probab=99.35 E-value=2.2e-11 Score=129.76 Aligned_cols=117 Identities=9% Similarity=-0.031 Sum_probs=77.2
Q ss_pred CCeEEEec-------CC-----ccccccchHHHHHHHHhhcCCceEEEEeeCcccchHHHHHHHHHHcCCCCCCCCCCCc
Q 010356 265 IPLIIVKS-------DG-----GFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPK 332 (512)
Q Consensus 265 ~d~vl~ks-------DG-----~~~Y~~~DiA~~~~k~~~~~~d~~iyV~g~~q~~hf~~l~~~~~~~g~~~~~~~~~~~ 332 (512)
.|.|+.|+ +| .|||. +|..+... ..+.+|+| .|.++..+-++...+++++|+.. .+.
T Consensus 189 rD~Vi~R~~~~~H~r~G~k~~iyPtYd---fA~~vdD~-l~gITHvl--Rg~E~~~~t~~~~~i~~alg~~~-----~P~ 257 (554)
T PRK05347 189 RDPVLYRIRHAHHHRTGDKWCIYPMYD---FAHCISDA-IEGITHSL--CTLEFEDHRPLYDWVLDNLPIPP-----HPR 257 (554)
T ss_pred CCCEEEEecCCCCCccCCceeeecCcC---ccceeecc-ccCCceEE--eccccccChHHHHHHHHHcCCCC-----CCc
Confidence 37788887 46 55664 45545444 35788885 89999888888878889998621 232
Q ss_pred eEEEEeEEEECCCCcceeeecCCe------e---------cHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhch
Q 010356 333 ASHVGFGLVLGEDGKRLRTRFSEV------V---------RLVDLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGY 397 (512)
Q Consensus 333 ~~Hv~~g~V~~~~g~kmSkR~G~~------v---------~l~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 397 (512)
..+ |+.+. .+|.|||||++.. | ++..+.+.+ +-+
T Consensus 258 ~~~--F~rln-~~~~~LSKRkl~~lV~~g~v~GWDDPRl~Ti~~lrrrG----------------------------~~P 306 (554)
T PRK05347 258 QYE--FSRLN-LTYTVMSKRKLKQLVEEKHVDGWDDPRMPTISGLRRRG----------------------------YTP 306 (554)
T ss_pred eEE--EEEEC-CCCCccccccchhccccCcccCccCCcchhHHHHHHCC----------------------------CCH
Confidence 222 45554 6889999999642 2 466665554 556
Q ss_pred hhHHHHhhccCC-CCCccccccccccc
Q 010356 398 GAAKYFDLKNNR-LTNYTFSFDQMLND 423 (512)
Q Consensus 398 ~airy~~L~~~~-~~~~~Fd~~~~~~~ 423 (512)
+||+=|++..-. .++..++|+.+-++
T Consensus 307 eAi~nf~~~lG~s~~~~~i~~~~L~~~ 333 (554)
T PRK05347 307 ESIREFCERIGVTKQDSVIDMSMLESC 333 (554)
T ss_pred HHHHHHHHHhCCCCCCCeecHHHHHHH
Confidence 777777776643 56667777766544
No 92
>PF03485 Arg_tRNA_synt_N: Arginyl tRNA synthetase N terminal domain; InterPro: IPR005148 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found at the N terminus of Arginyl tRNA synthetase, also called additional domain 1 (Add-1). It is about 140 residues long and it has been suggested that this domain will be involved in tRNA recognition [].; GO: 0000166 nucleotide binding, 0004814 arginine-tRNA ligase activity, 0005524 ATP binding, 0006420 arginyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1F7V_A 1F7U_A 1BS2_A 2ZUE_A 2ZUF_A 1IQ0_A 3GDZ_B.
Probab=99.34 E-value=1.2e-12 Score=107.12 Aligned_cols=48 Identities=42% Similarity=0.662 Sum_probs=45.3
Q ss_pred ccHHHHHHHHhhcCCCCCCCChHHHHHHHHHhCCCCCCceeeEeccCCeEEEEe
Q 010356 5 CSNNAMGLWSKIKGKGTEFKGPQPVGQAIMKNLPPSEMIESCSVAGPGFVNVVL 58 (512)
Q Consensus 5 ~~n~a~~~ak~~~~~~~~~~~p~~iA~~i~~~l~~~~~i~~v~~~g~GfiN~~l 58 (512)
|||+||.+||.+| ++|++||++|++.|...+.|++++++|||||||+|
T Consensus 38 ~~n~a~~lak~~k------~~P~~iA~~i~~~l~~~~~i~~vev~gpGFiN~~L 85 (85)
T PF03485_consen 38 QTNIAFRLAKKLK------KNPREIAEEIAEKLEKSPIIEKVEVAGPGFINFFL 85 (85)
T ss_dssp EEEHHHHHHHHTT------S-HHHHHHHHHHCHCTTTTEEEEEEETTTEEEEEE
T ss_pred eccchHHHHHHcC------CCHHHHHHHHHHhcCCCCCEEEEEEcCCcEEEEeC
Confidence 7999999999999 99999999999999988889999999999999997
No 93
>TIGR00440 glnS glutaminyl-tRNA synthetase. This protein is a relatively rare aminoacyl-tRNA synthetase, found in the cytosolic compartment of eukaryotes, in E. coli and a number of other Gram-negative Bacteria, and in Deinococcus radiodurans. In contrast, the pathway to Gln-tRNA in mitochondria, Archaea, Gram-positive Bacteria, and a number of other lineages is by misacylation with Glu followed by transamidation to correct the aminoacylation to Gln. This enzyme is a class I tRNA synthetase (hit by the pfam model tRNA-synt_1c) and is quite closely related to glutamyl-tRNA synthetases.
Probab=99.26 E-value=9.7e-11 Score=124.60 Aligned_cols=122 Identities=10% Similarity=-0.054 Sum_probs=78.6
Q ss_pred HHHHHHHHhhcCCceEEEEeeCcccchHHHHHHHHHHcCCCCCCCCCCCceEEEEeEEEECCCCcceeeecCCe------
Q 010356 283 LAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEV------ 356 (512)
Q Consensus 283 iA~~~~k~~~~~~d~~iyV~g~~q~~hf~~l~~~~~~~g~~~~~~~~~~~~~Hv~~g~V~~~~g~kmSkR~G~~------ 356 (512)
+|..+... ..+.+|+| .|.+|..+-.+...+.+.+++.. .+... .|+.+. .+|.|||||++..
T Consensus 187 fa~~vdD~-l~gITHvi--Rg~E~~~nt~~Y~~~~~~l~~~~-----~P~~~--~F~rln-~~~~kLSKRk~~~~V~~g~ 255 (522)
T TIGR00440 187 FTHCISDA-MENITHSL--CTLEFQDNRRLYDWVLDNIHIFP-----RPAQY--EFSRLN-LEGTVLSKRKLAQLVDDKF 255 (522)
T ss_pred Cceeehhc-cCCCceEe--ecHhhhhcHHHHHHHHHhcCccC-----CCceE--EEEEEC-CCCCCcccccchhccccCc
Confidence 45444443 35778885 89888777665555566677631 13222 456544 6899999999875
Q ss_pred ---------ecHHHHHHHHH--HHHHHHHHHhcCCCCCCHHHHHHHHHhhchhhHHHHhhccCCCCCcccccccc
Q 010356 357 ---------VRLVDLLDEAK--NRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNRLTNYTFSFDQM 420 (512)
Q Consensus 357 ---------v~l~dll~~~~--~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~airy~~L~~~~~~~~~Fd~~~~ 420 (512)
.++..+.+.++ ++..+++..-|-...-+..++..+ .+.+|-|++...++.+.+||..++
T Consensus 256 v~GWdDPRl~Ti~~lrrrG~~PeAi~nfl~~lG~s~~~~~~e~~~l-----~~~~r~f~~~~~~r~~av~d~~kl 325 (522)
T TIGR00440 256 VRGWDDPRMPTISGLRRRGYTPASIREFCNRIGVTKQDNNIEVVRL-----ESCIREDLNENAPRAMAVIDPVEV 325 (522)
T ss_pred ccCCCCCccccHHHHHHCCCCHHHHHHHHHHhCCCCCCCceehhhH-----HHHHHHhhhhcCcccccccccceE
Confidence 37889998887 456777776442211111122211 245889999999999999999987
No 94
>PRK12300 leuS leucyl-tRNA synthetase; Reviewed
Probab=99.26 E-value=5.7e-11 Score=136.31 Aligned_cols=162 Identities=11% Similarity=0.040 Sum_probs=113.3
Q ss_pred EEEeeCcccchHHHHHHHHHHcCCCCCCCCCCCceEEEEeEEEECCCCcceeeecCCeecHHHHHHHHHHHHHHHHHHhc
Q 010356 299 IYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAKNRSKAVLIERG 378 (512)
Q Consensus 299 iyV~g~~q~~hf~~l~~~~~~~g~~~~~~~~~~~~~Hv~~g~V~~~~g~kmSkR~G~~v~l~dll~~~~~~~~~~~~~~~ 378 (512)
+++.|.||...+--.+.....+.+.. .+++..+.+ +|+|+. +|+|||||+||+|++.|++++
T Consensus 533 ~~~~GkDii~~Hl~~~~~~~~a~~~~--~~~Pk~v~~--hG~vl~-~G~KMSKS~GNvVdp~eii~~------------- 594 (897)
T PRK12300 533 WRHSGKDLIPNHLTFFIFNHVAIFPE--EKWPRGIVV--NGFVLL-EGKKMSKSKGNVIPLRKAIEE------------- 594 (897)
T ss_pred EEEeeeccCccHHHHHHHHHHHhcCC--CccCcEEEE--cceEEE-CCccccCcCCCCCCHHHHHHH-------------
Confidence 56788888432111111112222211 134445544 488986 799999999999999999998
Q ss_pred CCCCCCHHHHHHHHHhhchhhHHHHhhcc-CCCCCccccccccccccCCchHHHHHHHHHHHHHHHhhcCChhhhhhcCC
Q 010356 379 KDKEWTEEELEQTAEAVGYGAAKYFDLKN-NRLTNYTFSFDQMLNDKGNTAVYLLYAHARICSIIRKSGKDIEELKKTGS 457 (512)
Q Consensus 379 ~~~~~~~~~~~~~a~~~~~~airy~~L~~-~~~~~~~Fd~~~~~~~~~~~g~ylqY~~aR~~sil~k~~~~~~~~~~~~~ 457 (512)
+|+|++||++++. .+..|.+|+++.+... .....|+.++.++...... .
T Consensus 595 ----------------yGaDalRl~L~~~~~~~~D~~fs~~~v~~~--------~~~l~r~~~~~~~~~~~~~---~--- 644 (897)
T PRK12300 595 ----------------YGADVVRLYLTSSAELLQDADWREKEVESV--------RRQLERFYELAKELIEIGG---E--- 644 (897)
T ss_pred ----------------cChHHHHHHHHhCCCCCCCCccCHHHHHHH--------HHHHHHHHHHHHHHhcCCC---c---
Confidence 8999999999985 6789999999876433 2223577777766432110 0
Q ss_pred CCCCCHHHHHHHHHHHhhHHHHHHHHHhcChHHHHHHHH-HHHHHHhcchhcc
Q 010356 458 LVLDHADERALGLHLLHFSEVIEEALTNLLPNVVCEYLY-NLSEYFTRFYSNC 509 (512)
Q Consensus 458 ~~l~~~~e~~L~~~l~~~~~~v~~a~~~~~p~~l~~yl~-~La~~fn~fY~~~ 509 (512)
.. ....++.++..+....+.+.+++++++++.+++.++ .+...+|.|.+.+
T Consensus 645 ~~-~~~~D~wils~l~~~i~~v~~~~e~~~~~~A~~~i~~~l~~~~n~Yi~~~ 696 (897)
T PRK12300 645 EE-LRFIDKWLLSRLNRIIKETTEAMESFQTRDAVQEAFYELLNDLRWYLRRV 696 (897)
T ss_pred cc-cCHhHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 11 235577899999999999999999999999998875 7888888776654
No 95
>KOG0433 consensus Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.23 E-value=1.7e-09 Score=115.44 Aligned_cols=171 Identities=13% Similarity=0.084 Sum_probs=101.1
Q ss_pred eeCccc-chHHHHHHHH-HHcCCCCCCCCCCCceEEEEeEEEECCCCcceeeecCCeecHHHHHHHHHHHHHHHHHHhcC
Q 010356 302 TDVGQQ-LHFDMVFSAA-KRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAKNRSKAVLIERGK 379 (512)
Q Consensus 302 ~g~~q~-~hf~~l~~~~-~~~g~~~~~~~~~~~~~Hv~~g~V~~~~g~kmSkR~G~~v~l~dll~~~~~~~~~~~~~~~~ 379 (512)
-|.||. +-|+...... ..-+.. |...-++| ||+.+++|.|||||.||+|+++.+++- .++
T Consensus 572 EG~DQ~rGWFQSsLLTsvA~q~kA----PYk~vivH---GFtlDE~G~KMSKSlGNVidP~~v~~G-----------~~k 633 (937)
T KOG0433|consen 572 EGVDQFRGWFQSSLLTSVAVQNKA----PYKKVIVH---GFTLDENGNKMSKSLGNVVDPTMVTDG-----------SLK 633 (937)
T ss_pred ecchhcchHHHHHHHHHHHHhccC----Cchheeee---eeEecCCccchhhcccCcCCHHHHhCC-----------ccc
Confidence 366664 4666432111 111222 23344444 889999999999999999999988775 111
Q ss_pred CCCCCHHHHHHHHHhhchhhHHHHhhccCCCCCccccccccccccCCchHHHHHHHHHHHHHHHhhcCChhhhhhcCCCC
Q 010356 380 DKEWTEEELEQTAEAVGYGAAKYFDLKNNRLTNYTFSFDQMLNDKGNTAVYLLYAHARICSIIRKSGKDIEELKKTGSLV 459 (512)
Q Consensus 380 ~~~~~~~~~~~~a~~~~~~airy~~L~~~~~~~~~Fd~~~~~~~~~~~g~ylqY~~aR~~sil~k~~~~~~~~~~~~~~~ 459 (512)
.+. +|+|++||+........++.....-+.+... ..--+..+..=+.+-+.........+|- ..
T Consensus 634 ~pa------------yGaD~LR~WVA~~~~t~d~~iGp~il~qv~e-~l~K~R~T~RfllGnl~d~~~~~~~~p~---~d 697 (937)
T KOG0433|consen 634 QPA------------YGADGLRFWVAGSENTGESKIGPKILDQVDE-KLIKFRNTFRFLLGNLQDFDGKQVKFPL---KD 697 (937)
T ss_pred CCC------------ccccceeeeeecccccCceecCHHHHHHHHH-HHHHHHhHHHHHhhcccccCCccccccc---hh
Confidence 111 7999999999866666666666654433211 1000100110001111111111001110 11
Q ss_pred CCCHHHHHHHHHHHhhHHHHHHHHHhcChHHHHHHHHH-HHHHHhcchh
Q 010356 460 LDHADERALGLHLLHFSEVIEEALTNLLPNVVCEYLYN-LSEYFTRFYS 507 (512)
Q Consensus 460 l~~~~e~~L~~~l~~~~~~v~~a~~~~~p~~l~~yl~~-La~~fn~fY~ 507 (512)
+ .--++-++.+|..+...+++.+++|+..+++.-|-. +...++.||-
T Consensus 698 l-~~iDq~~L~ql~~~~~~i~e~Y~~Y~f~kVv~~lq~F~~~~lSa~Yf 745 (937)
T KOG0433|consen 698 L-RYIDQYMLQQLDAIVKRIIELYNDYKFRKVVNDLQQFLQRNLSAFYF 745 (937)
T ss_pred h-hhhhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhHHHH
Confidence 1 122566888999999999999999999999998877 6678888883
No 96
>PRK14703 glutaminyl-tRNA synthetase/YqeY domain fusion protein; Provisional
Probab=99.20 E-value=2.8e-10 Score=126.33 Aligned_cols=247 Identities=18% Similarity=0.113 Sum_probs=142.1
Q ss_pred CHHHHHHHHHHHHHcCCCCCCCcCCCceEEEEeeCCCCCCCCcccchhhhhHHHHHHHHHHHCCCeEEEeeccCccchHH
Q 010356 59 SKNWMAKNIQKMLVDGIETWAPKLRVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQF 138 (512)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~Ve~~spNp~~~lHvGH~R~~iiGD~lar~l~~~G~~V~~~~~i~D~G~qi 138 (512)
++.|+...+.+-+..+.. .+| +-=..|+|||+|||||+|++++-..+||- +.|-=+.| ++|...
T Consensus 12 ~~~f~~~~~~~~l~~g~~--------~~v-~tRFaPsPtG~lHiGhar~alln~~~A~~--~~G~~~LR---~eDTd~-- 75 (771)
T PRK14703 12 SPNFITEIIEEDLEAGRY--------PRV-VTRFPPEPNGYLHIGHAKSILLNFGIARD--YGGRCHLR---MDDTNP-- 75 (771)
T ss_pred chhHHHHHHHHHHhcCCC--------Cce-EEEeCcCCCCcccHHHHHHHHHHHHHHHH--hCCEEEEE---eCCCCC--
Confidence 345677777655544321 234 45778999999999999999999999985 45644444 344211
Q ss_pred HHHHHHHHhhCCCCCccCcccHHHHHHHHHHHhcccCCChHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHH
Q 010356 139 GMLIEYLFEKFPNSEDANETAIGELQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYK 218 (512)
Q Consensus 139 ~~l~~~~~~~~~~~~~~~~~~i~~l~~~y~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~ 218 (512)
+ . . ...+.+.+.++++
T Consensus 76 ------------~---------r--------------~-----------------------------~~e~~~~I~~dl~ 91 (771)
T PRK14703 76 ------------E---------T--------------E-----------------------------DTEYVEAIKDDVR 91 (771)
T ss_pred ------------C---------c--------------C-----------------------------ChHHHHHHHHHHH
Confidence 0 0 0 1122344555666
Q ss_pred HcCCeEee--eccccccCchHHHHHHHHhCCCeee--------------------------------------------e
Q 010356 219 RLRVDLEE--KGESFYNPYIPGVIDELSKQGLVEE--------------------------------------------S 252 (512)
Q Consensus 219 ~L~I~f~~--~~es~~~~~v~~~~~~L~~~g~~~~--------------------------------------------~ 252 (512)
.||+..|. ...|.|.+...+..++|+++|.+|. .
T Consensus 92 wLG~~wd~~~~~qS~~~~~y~~~a~~Li~~G~aY~c~cs~eei~~~r~~~~~~g~~~~~R~~s~ee~l~~~~~m~~G~~~ 171 (771)
T PRK14703 92 WLGFDWGEHLYYASDYFERMYAYAEQLIKMGLAYVDSVSEEEIRELRGTVTEPGTPSPYRDRSVEENLDLFRRMRAGEFP 171 (771)
T ss_pred HcCCCCCCCceEeecCHHHHHHHHHHHHHcCCcccCcCCHHHHHHHHhhhhhcCCCCCCCCCCHHHHHHHHHHHhCCCCc
Confidence 66666532 2245555555566666666665552 1
Q ss_pred CceEEEEecC-------CCCCeEEEecCCccc---------cccchHHHHHHHHhhcCCceEEEEeeCcccchHHHHHHH
Q 010356 253 QGARVIFIEG-------VNIPLIIVKSDGGFN---------YASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSA 316 (512)
Q Consensus 253 dGa~~~~~~g-------~~~d~vl~ksDG~~~---------Y~~~DiA~~~~k~~~~~~d~~iyV~g~~q~~hf~~l~~~ 316 (512)
+|..+++... .-.|.|+.|.++++. |.|=|+|..+... ..+.+|+| .|.++..+-+....+
T Consensus 172 ~g~~vlR~Kid~~~~n~~~rD~v~~R~~~~~H~~~Gd~~~i~PtYdfa~~vdD~-l~gITHvl--Rg~E~~~~~~~~~~l 248 (771)
T PRK14703 172 DGAHVLRAKIDMSSPNMKLRDPLLYRIRHAHHYRTGDEWCIYPMYDFAHPLEDA-IEGVTHSI--CTLEFENNRAIYDWV 248 (771)
T ss_pred CCCeEEEEEeeccCCcccCCCCEEEEEcCCCCCCcCCCCCcCCCccccceeecc-ccCCcEEE--ecHhhhhccHHHHHH
Confidence 2333444321 113778888754332 2333344444433 35677885 899987777766677
Q ss_pred HHHcCCCCCCCCCCCceEEEEeEEEECCCCcceeeec-------CCee--------cHHHHHHHHHHHHHHHHHHhcCCC
Q 010356 317 AKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRF-------SEVV--------RLVDLLDEAKNRSKAVLIERGKDK 381 (512)
Q Consensus 317 ~~~~g~~~~~~~~~~~~~Hv~~g~V~~~~g~kmSkR~-------G~~v--------~l~dll~~~~~~~~~~~~~~~~~~ 381 (512)
++++|..+ ..+... .||.+.. .|.+||||+ |-+- ++..+.+.+
T Consensus 249 ~~~l~~~~----~~P~~~--~f~rl~l-~~~~lSKRkl~~lV~~g~v~GWDDPRlpti~~lrrrG--------------- 306 (771)
T PRK14703 249 LDHLGPWP----PRPRQY--EFARLAL-GYTVMSKRKLRELVEEGYVSGWDDPRMPTIAGQRRRG--------------- 306 (771)
T ss_pred HHHhCCCC----CCccee--EEEEecc-CCCcccccCchhccccCcccCCCCCchhhHHHHHHCC---------------
Confidence 88996421 113222 2455553 578999998 4321 344444433
Q ss_pred CCCHHHHHHHHHhhchhhHHHHhhccC-CCCCccccccccccc
Q 010356 382 EWTEEELEQTAEAVGYGAAKYFDLKNN-RLTNYTFSFDQMLND 423 (512)
Q Consensus 382 ~~~~~~~~~~a~~~~~~airy~~L~~~-~~~~~~Fd~~~~~~~ 423 (512)
+-++|||-|++..- ..++..++|+.+-+.
T Consensus 307 -------------~~peAi~~f~~~lG~s~~~~~i~~~~L~~~ 336 (771)
T PRK14703 307 -------------VTPEAIRDFADQIGVAKTNSTVDIGVLEFA 336 (771)
T ss_pred -------------CCHHHHHHHHHHhCCCccCceecHHHHHHH
Confidence 56778887777664 356677888766443
No 97
>PLN02859 glutamine-tRNA ligase
Probab=99.17 E-value=1.8e-10 Score=126.57 Aligned_cols=107 Identities=14% Similarity=0.050 Sum_probs=69.0
Q ss_pred cccchHHHHHHHHhhcCCceEEEEeeCcccchHHHHHHHHHHcCCCCCCCCCCCceEEEEeEEEECCCCcceeeecCCe-
Q 010356 278 YASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEV- 356 (512)
Q Consensus 278 Y~~~DiA~~~~k~~~~~~d~~iyV~g~~q~~hf~~l~~~~~~~g~~~~~~~~~~~~~Hv~~g~V~~~~g~kmSkR~G~~- 356 (512)
|.|=|+|..+... ..+.+|+| .|.++..+-++..-+++++|+. .+.+.|. +. ++.+|.+||||++..
T Consensus 441 yPtYdFA~~vdD~-legITHvL--Rg~E~~~~~~~y~wl~~aLg~~------~P~~~~f--~r-Ln~~~t~LSKRkl~~l 508 (788)
T PLN02859 441 YPSYDYAHCIVDS-LENITHSL--CTLEFETRRASYYWLLDSLGLY------QPYVWEY--SR-LNVTNTVMSKRKLNRL 508 (788)
T ss_pred Eeccccccccccc-ccCCceEe--echhhhcCCHHHHHHHHHcCCC------CCcEEee--ee-ECCCCCcccCcCchhc
Confidence 3333455444443 35677885 8888887777766788999984 3666777 54 568899999999764
Q ss_pred --------------ecHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhchhhHHHHhhccCC-CCCc-ccccccc
Q 010356 357 --------------VRLVDLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNR-LTNY-TFSFDQM 420 (512)
Q Consensus 357 --------------v~l~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~airy~~L~~~~-~~~~-~Fd~~~~ 420 (512)
.++..+.+.+ +-++||+=|+...-. ..+- .|+|+.+
T Consensus 509 V~~g~V~GWDDPRl~Tl~glRrrG----------------------------~~PeAi~nFi~~lG~s~~~~e~i~~~~L 560 (788)
T PLN02859 509 VTEKYVDGWDDPRLLTLAGLRRRG----------------------------VTPTAINAFCRGIGITRSDNSLIRMDRL 560 (788)
T ss_pred cccCcccCCCCCcchhHHHHHHCC----------------------------CCHHHHHHHHHHhCCCCCCCceecHHHH
Confidence 2445555543 456777777776543 2344 5777777
Q ss_pred cccc
Q 010356 421 LNDK 424 (512)
Q Consensus 421 ~~~~ 424 (512)
.+++
T Consensus 561 e~~~ 564 (788)
T PLN02859 561 EHHI 564 (788)
T ss_pred HhhC
Confidence 4443
No 98
>PLN02959 aminoacyl-tRNA ligase
Probab=99.00 E-value=4.3e-09 Score=122.69 Aligned_cols=166 Identities=14% Similarity=0.134 Sum_probs=105.0
Q ss_pred ceEEEEeeCCCCCCCCcccchhhhhHHHHHHHHHHHCCCeEEEeeccCccchHHHHHHHHHH---hhCCCCCccC--ccc
Q 010356 85 KKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLF---EKFPNSEDAN--ETA 159 (512)
Q Consensus 85 ~~v~Ve~~spNp~~~lHvGH~R~~iiGD~lar~l~~~G~~V~~~~~i~D~G~qi~~l~~~~~---~~~~~~~~~~--~~~ 159 (512)
++..|.+.-|++||+|||||++|.++.|+++|+.|+.||+|.+....+..|.+|...+..+. +.++...... +..
T Consensus 45 ~kf~i~~ppPY~NG~lHiGHa~t~t~~D~i~Rykrm~G~~vlfp~G~d~tGlPIe~~aek~~~ei~~~g~~~~~~~~~~~ 124 (1084)
T PLN02959 45 EKFFGNFPYPYMNGLLHLGHAFSLSKLEFAAAYHRLRGANVLLPFAFHCTGMPIKASADKLAREIQQYGNPPVFPEEDED 124 (1084)
T ss_pred CcEEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHHcCCCccCCCCCcCCCCccHHHHHHHHHHHHHHcCCCccccccccc
Confidence 66889899999999999999999999999999999999999999999999999998875542 2333211000 000
Q ss_pred HHHHHHHHH--HHhcccCCChHHHHHHHHHHHHhcc-----------CChH-HH---HHHHHHHHHHHHHHHHHHHHcCC
Q 010356 160 IGELQEFYR--RSKNRFDSDPAFKERAQQAVVRLQS-----------GEPK-YH---EAWAQICEISRKEFDKVYKRLRV 222 (512)
Q Consensus 160 i~~l~~~y~--~~~~~~~~~~~~~~~~~~~~~~le~-----------gd~~-~~---~~w~~~~~~~~~~~~~~~~~L~I 222 (512)
..+....-. ...+. ....+|.+.+++...+... |-|+ .+ ..-..+++.+-..+++++++||+
T Consensus 125 ~~~~~~~~~~~~~~~~-~~~~~f~~~~~k~~~k~~~~~~~~~~~~~~~~~~~~i~~f~dp~~~~~yF~~~~~~~~k~lG~ 203 (1084)
T PLN02959 125 EAAAVAAAKAEAEAAA-APPDKFKGKKSKAVAKSGTQKYQWEIMRSFGLPDSEIAKFQDPYHWLSYFPPLAKEDLKAFGL 203 (1084)
T ss_pred cccccccccccccccc-ccHHHHHHHHHHHHHHhCCchHHHHHHhhcCCchhhhhhccCHHHHHHhccHHHHHHHHHhCc
Confidence 000000000 00000 0112344443333222110 1111 11 11122455566778999999999
Q ss_pred eEeeecc-------ccccCchHHHHHHHHhCCCeee
Q 010356 223 DLEEKGE-------SFYNPYIPGVIDELSKQGLVEE 251 (512)
Q Consensus 223 ~f~~~~e-------s~~~~~v~~~~~~L~~~g~~~~ 251 (512)
..||..+ ..|...+...+.+|.++|++|.
T Consensus 204 ~iDW~r~f~T~d~np~y~~~v~wqf~~L~ekG~I~~ 239 (1084)
T PLN02959 204 GCDWRRSFITTDVNPYYDAFVRWQFRKLKKKGKIVK 239 (1084)
T ss_pred eEeCCCCcCCCCCChhHHHHHHHHHHHHHHCCCEEe
Confidence 9998543 2366779999999999999985
No 99
>KOG0435 consensus Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=98.99 E-value=5e-10 Score=118.50 Aligned_cols=115 Identities=22% Similarity=0.311 Sum_probs=88.8
Q ss_pred CCceEEEEeeCCCCCCCCcccchhhhhHHHHHHHHHHHCCCeEEEeeccCccchHHHHHHHHHHhhCCCCCccCcccHHH
Q 010356 83 RVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGE 162 (512)
Q Consensus 83 ~~~~v~Ve~~spNp~~~lHvGH~R~~iiGD~lar~l~~~G~~V~~~~~i~D~G~qi~~l~~~~~~~~~~~~~~~~~~i~~ 162 (512)
+++|.++ --=|.|.|.|||||.|-+.|.|+|||+.|++||+|+.-...+-+|.+-..-|
T Consensus 56 sk~KYiL-sMFPYPSG~LHiGHvRVYTIsD~laRf~rm~GynVihPMGWDaFGLPAENAA-------------------- 114 (876)
T KOG0435|consen 56 SKKKYIL-SMFPYPSGALHIGHVRVYTISDILARFYRMKGYNVIHPMGWDAFGLPAENAA-------------------- 114 (876)
T ss_pred CCCceEE-EecCCCCCcccccceEEEEehHHHHHHHHhcCceeecCCcccccCCchhhHH--------------------
Confidence 3455544 5679999999999999999999999999999999999998888876543211
Q ss_pred HHHHHHHHhcccCCChHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHcCCeEeeecc-c----cccCchH
Q 010356 163 LQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKGE-S----FYNPYIP 237 (512)
Q Consensus 163 l~~~y~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~L~I~f~~~~e-s----~~~~~v~ 237 (512)
.++ ..+| +.| ...-++.+++.+.+||+.|||..| | .|-...+
T Consensus 115 --------ier-gv~P---------------------~sW---T~~NI~~Mk~Ql~~lg~~FDWdrEiSTC~PdYYKWTQ 161 (876)
T KOG0435|consen 115 --------IER-GVHP---------------------ASW---TINNIAKMKQQLKSLGISFDWDREISTCEPDYYKWTQ 161 (876)
T ss_pred --------Hhc-CCCc---------------------hhh---hHHHHHHHHHHHHHcCcccccccccccCCcchhHHHH
Confidence 111 1122 233 344567889999999999999766 3 5667789
Q ss_pred HHHHHHHhCCCeee
Q 010356 238 GVIDELSKQGLVEE 251 (512)
Q Consensus 238 ~~~~~L~~~g~~~~ 251 (512)
.++-+|.++|++|.
T Consensus 162 wiFlkLfe~GLAYq 175 (876)
T KOG0435|consen 162 WIFLKLFEKGLAYQ 175 (876)
T ss_pred HHHHHHHHhhhhhc
Confidence 99999999999996
No 100
>PTZ00437 glutaminyl-tRNA synthetase; Provisional
Probab=98.93 E-value=1e-08 Score=109.40 Aligned_cols=40 Identities=25% Similarity=0.237 Sum_probs=31.7
Q ss_pred ceEEEEeeCCCCCCCCcccchhhhhHHHHHHHHHHHCCCeEEE
Q 010356 85 KKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLR 127 (512)
Q Consensus 85 ~~v~Ve~~spNp~~~lHvGH~R~~iiGD~lar~l~~~G~~V~~ 127 (512)
.+|+. =..|+|||+|||||+|++++-..+||. +-|-=+.|
T Consensus 50 gkv~t-RFaPsPtG~LHiGharaalln~~~Ar~--~gG~~iLR 89 (574)
T PTZ00437 50 GKPYF-RFPPEPNGFLHIGHAKSMNLNFGSARA--HGGKCYLR 89 (574)
T ss_pred CcEEE-EeCCCCCCcccHHHHHHHHHHHHHHHH--hCCEEEEE
Confidence 45554 668999999999999999999999985 34554444
No 101
>PLN02959 aminoacyl-tRNA ligase
Probab=98.81 E-value=5.9e-08 Score=113.31 Aligned_cols=146 Identities=10% Similarity=0.067 Sum_probs=95.0
Q ss_pred EEEeeCcccc-hHHHH-HHHHHHcCCCCCCCCCCCceEEEEeEEEECCCCcceeeecCCeecHHHHHHHHHHHHHHHHHH
Q 010356 299 IYVTDVGQQL-HFDMV-FSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAKNRSKAVLIE 376 (512)
Q Consensus 299 iyV~g~~q~~-hf~~l-~~~~~~~g~~~~~~~~~~~~~Hv~~g~V~~~~g~kmSkR~G~~v~l~dll~~~~~~~~~~~~~ 376 (512)
+++.|.||.. ||... +......|-. +|...+.. +|+|+ .+|+|||||+||+|++.|++++
T Consensus 674 l~~sG~Dii~~wl~~~l~~~~al~~~~----P~p~~v~v--~G~V~-~~G~KMSKSkGNvI~p~diI~k----------- 735 (1084)
T PLN02959 674 LRVSGKDLIQNHLTFAIYNHTAIWAEE----HWPRGFRC--NGHLM-LNSEKMSKSTGNFLTLRQAIEE----------- 735 (1084)
T ss_pred EEEecccHHHHHHHHHHHHHHHhcCCC----CCCceEEE--ccEEe-cCCcCccccCCCcCCHHHHHHH-----------
Confidence 5677888743 44322 1111123322 45444443 48888 7899999999999999999998
Q ss_pred hcCCCCCCHHHHHHHHHhhchhhHHHHhhccC-CCCCccccccccccccCCchHHHHHHHHHHHHHHH---hhcCChhhh
Q 010356 377 RGKDKEWTEEELEQTAEAVGYGAAKYFDLKNN-RLTNYTFSFDQMLNDKGNTAVYLLYAHARICSIIR---KSGKDIEEL 452 (512)
Q Consensus 377 ~~~~~~~~~~~~~~~a~~~~~~airy~~L~~~-~~~~~~Fd~~~~~~~~~~~g~ylqY~~aR~~sil~---k~~~~~~~~ 452 (512)
+|+|++||++++.. ...|.+|+++.+.. +..|+.+.++ ..-......
T Consensus 736 ------------------yGADalRl~la~~~~~~~D~nF~~k~~n~-----------~~~~l~n~~~~~~~~~~~~~~~ 786 (1084)
T PLN02959 736 ------------------FSADATRFALADAGDGVDDANFVFETANA-----------AILRLTKEIAWMEEVLAAESSL 786 (1084)
T ss_pred ------------------hCchHHHHHHhhcCCccCCCCccHHHHHH-----------HHHHHHHHHHHHHHhhhhhccc
Confidence 89999999999874 46889998875432 1122222221 100000000
Q ss_pred hhcCCCCCCCHHHHHHHHHHHhhHHHHHHHHHhcChHHHHHH
Q 010356 453 KKTGSLVLDHADERALGLHLLHFSEVIEEALTNLLPNVVCEY 494 (512)
Q Consensus 453 ~~~~~~~l~~~~e~~L~~~l~~~~~~v~~a~~~~~p~~l~~y 494 (512)
.. ... ....++.++..+......+.+++++++++.+++.
T Consensus 787 ~~--~~~-~~~~D~wils~l~~~i~~v~~a~e~y~f~~A~~~ 825 (1084)
T PLN02959 787 RT--GPP-STYADRVFENEINIAIAETEKNYEAMMFREALKS 825 (1084)
T ss_pred CC--ccc-CCHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHH
Confidence 00 011 2456788999999999999999999999999986
No 102
>KOG0434 consensus Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=98.77 E-value=7.1e-07 Score=95.07 Aligned_cols=134 Identities=17% Similarity=0.238 Sum_probs=95.4
Q ss_pred EeEEEECCCCcceeeecCCeecHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhchhhHHHHhhccC--CCCCcc
Q 010356 337 GFGLVLGEDGKRLRTRFSEVVRLVDLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNN--RLTNYT 414 (512)
Q Consensus 337 ~~g~V~~~~g~kmSkR~G~~v~l~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~airy~~L~~~--~~~~~~ 414 (512)
..|+|+-.||+|||||+.|+-.+..++++ +|.||+|.+++... +..++.
T Consensus 590 vnGlVLAeDG~KMSKrlkNYPdP~~iink-----------------------------YGADalRlYLInSPVvraE~Lk 640 (1070)
T KOG0434|consen 590 VNGLVLAEDGKKMSKRLKNYPDPSLIINK-----------------------------YGADALRLYLINSPVVRAENLK 640 (1070)
T ss_pred EeeeEEecccHHHhhhhhcCCCHHHHHHh-----------------------------hcchheeeeeecCccccccccc
Confidence 45999999999999999999999988888 89999999999764 457889
Q ss_pred ccccccccccCCc--------hHHHHHHHHHHHHHHHhhcCChhhhhhcCCCCCCCHHHHHHHHHHHhhHHHHHHHHHhc
Q 010356 415 FSFDQMLNDKGNT--------AVYLLYAHARICSIIRKSGKDIEELKKTGSLVLDHADERALGLHLLHFSEVIEEALTNL 486 (512)
Q Consensus 415 Fd~~~~~~~~~~~--------g~ylqY~~aR~~sil~k~~~~~~~~~~~~~~~l~~~~e~~L~~~l~~~~~~v~~a~~~~ 486 (512)
|.-+-++..-.+- .+|+|++. .+.+-. +.+-... +.....+--++.++.....+..-+++-+++|
T Consensus 641 FkeeGVrevvk~v~lPW~NsyrF~~qn~~-----~~~~~~-g~~f~~~-~~~~S~NvmDrWI~a~~qslv~fv~~eM~~Y 713 (1070)
T KOG0434|consen 641 FKEEGVREVVKDVLLPWYNSYRFLVQNAA-----LLKKET-GKDFVFD-DSVTSSNVMDRWILASTQSLVGFVREEMDQY 713 (1070)
T ss_pred cchhhHHHHHHhhhhhhhHHHHHHHHHHH-----Hhcccc-CCccccc-cccccchhHHHHHHHHHHHHHHHHHHHHHhe
Confidence 9888777643321 23444322 122221 1110000 1111123346778888888889999999999
Q ss_pred ChHHHHHHHHHHHHHHhcch
Q 010356 487 LPNVVCEYLYNLSEYFTRFY 506 (512)
Q Consensus 487 ~p~~l~~yl~~La~~fn~fY 506 (512)
+...++--|..+...+.+||
T Consensus 714 rLytVvp~llkfiD~LTNwY 733 (1070)
T KOG0434|consen 714 RLYTVVPRLLKFIDELTNWY 733 (1070)
T ss_pred ehhhhHHHHHHHHHHhhhhh
Confidence 99999988888888888888
No 103
>PRK12300 leuS leucyl-tRNA synthetase; Reviewed
Probab=98.67 E-value=5.3e-08 Score=112.06 Aligned_cols=124 Identities=23% Similarity=0.339 Sum_probs=88.6
Q ss_pred CcccchhhhhHHHHHHHHHHHCCCeEEEeeccCccchHHHHHHHHHHhhCCCCCccCcccHHHHHHHHHHHhcccCCChH
Q 010356 100 MHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQEFYRRSKNRFDSDPA 179 (512)
Q Consensus 100 lHvGH~R~~iiGD~lar~l~~~G~~V~~~~~i~D~G~qi~~l~~~~~~~~~~~~~~~~~~i~~l~~~y~~~~~~~~~~~~ 179 (512)
||+||+|+.++.|+++|+.|++||+|.+....+-+|.++...+..+.. .+.+.. +.++. .++..+
T Consensus 1 lHiGH~~~~t~~D~i~Ry~rm~G~~Vl~~~G~d~~GlPie~~ae~~~~--------~~~~~~---~~~~~---~~gi~~- 65 (897)
T PRK12300 1 LHVGHGRTYTIGDVIARYKRMRGYNVLFPMAFHVTGTPILGIAERIAR--------GDPETI---ELYKS---LYGIPE- 65 (897)
T ss_pred CccchhHHHHHHHHHHHHHHcCCCcCCCCCCCCCCCcCHHHHHHHhhc--------cchhHH---HHHHH---HcCCCH-
Confidence 799999999999999999999999999999999999999866533210 011111 11111 111111
Q ss_pred HHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHcCCeEeeecc-----ccccCchHHHHHHHHhCCCeeee
Q 010356 180 FKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKGE-----SFYNPYIPGVIDELSKQGLVEES 252 (512)
Q Consensus 180 ~~~~~~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~L~I~f~~~~e-----s~~~~~v~~~~~~L~~~g~~~~~ 252 (512)
+.+.++ +++ +.+++.+...+++++++||+.+||..+ ..|...+..++.+|.++|++|..
T Consensus 66 ------~~i~~f--~~~------~~~~~~~~~~~~~~~~~lG~~~DW~r~y~T~dp~y~~~v~w~F~~L~ekGliyrg 129 (897)
T PRK12300 66 ------EELEKF--KDP------EYIVEYFSEEAKEDMKRIGYSIDWRREFTTTDPEYSKFIEWQFRKLKEKGLIVKG 129 (897)
T ss_pred ------HHHHHh--cCH------HHHHHHhHHHHHHHHHHhCcEEeCCCCeECCChhHHHHHHHHHHHHHHCCCEecC
Confidence 111111 122 467888999999999999999998643 45677899999999999999963
No 104
>PRK13354 tyrosyl-tRNA synthetase; Provisional
Probab=97.54 E-value=0.00026 Score=74.55 Aligned_cols=61 Identities=13% Similarity=0.076 Sum_probs=45.4
Q ss_pred hcCCceEEEEeeCcccchHHHHHHHHHHcCCCCCCCCCCCceEEEEeEEEECCCCcceeeecCCeecHHHH
Q 010356 292 EEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDL 362 (512)
Q Consensus 292 ~~~~d~~iyV~g~~q~~hf~~l~~~~~~~g~~~~~~~~~~~~~Hv~~g~V~~~~g~kmSkR~G~~v~l~dl 362 (512)
.++++.. +.|.||..|+..-..+++.+|... + .++..-++.+.+|.|||||.||+|.|+|=
T Consensus 184 ~~~~~iq--~gG~DQ~~ni~~grdl~~r~~~~~------~--~~lt~PlL~g~dG~KMsKS~~naI~L~d~ 244 (410)
T PRK13354 184 KEDVDLQ--IGGTDQWGNILMGRDLQRKLEGEE------Q--FGLTMPLLEGADGTKMGKSAGGAIWLDPE 244 (410)
T ss_pred cCCCCEE--EecHHHHHHHHHHHHHHHHhCCCC------c--eEeccCCccCCCCCccCCCCCCceeccCC
Confidence 3455533 589999999998888888888631 2 22233467788899999999999988764
No 105
>KOG1147 consensus Glutamyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=97.49 E-value=0.00066 Score=71.29 Aligned_cols=42 Identities=17% Similarity=-0.019 Sum_probs=30.3
Q ss_pred HHHHHHHHHcCCeEe-eeccccccCchHHHHHHHHhCCCeeee
Q 010356 211 KEFDKVYKRLRVDLE-EKGESFYNPYIPGVIDELSKQGLVEES 252 (512)
Q Consensus 211 ~~~~~~~~~L~I~f~-~~~es~~~~~v~~~~~~L~~~g~~~~~ 252 (512)
+.+.+++..|||..| +...|.|-+.+-..-.+|+..|.+|.+
T Consensus 253 ~~IleDl~~LgIkpd~~TyTSDyF~~i~dycv~likeGKAYvD 295 (712)
T KOG1147|consen 253 DVILEDLSLLGIKPDRVTYTSDYFDEIMDYCVKLIKEGKAYVD 295 (712)
T ss_pred HHHHHHHHHhCcCcceeeechhhHHHHHHHHHHHHhcCccccc
Confidence 456678888999885 334577777777777788888888753
No 106
>PRK05912 tyrosyl-tRNA synthetase; Validated
Probab=97.46 E-value=0.00033 Score=73.88 Aligned_cols=60 Identities=17% Similarity=0.085 Sum_probs=44.5
Q ss_pred hcCCceEEEEeeCcccchHHHHHHHHHHcCCCCCCCCCCCceEEEEeEEEECCCCcceeeecCCeecHHH
Q 010356 292 EEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVD 361 (512)
Q Consensus 292 ~~~~d~~iyV~g~~q~~hf~~l~~~~~~~g~~~~~~~~~~~~~Hv~~g~V~~~~g~kmSkR~G~~v~l~d 361 (512)
.++++.. +.|.||..|+..-..+++.+|..+ ..++..-++.+.+|+|||||.||.|.++|
T Consensus 186 ~~~~~i~--~gG~DQ~~ni~~grdla~r~~~~~--------~~~l~~plL~~~~G~KMsKS~~naI~L~d 245 (408)
T PRK05912 186 RYGCDLQ--LGGSDQWGNILSGRDLQRRYGGKP--------QFGLTMPLLTGLDGKKMGKSEGNAVWLDE 245 (408)
T ss_pred cCCCCEE--eccHHHHHHHHHHHHHHHHhCCCC--------eEEEecCCcCCCCCCcccCCCCCceeCCC
Confidence 3455544 589999999998778888887531 12233346778889999999999999886
No 107
>TIGR00233 trpS tryptophanyl-tRNA synthetase. This model represents tryptophanyl-tRNA synthetase. Some members of the family have a pfam00458 domain amino-terminal to the region described by this model.
Probab=97.39 E-value=0.0018 Score=66.31 Aligned_cols=67 Identities=18% Similarity=0.231 Sum_probs=42.4
Q ss_pred cCCceEEEEeeCcccchHHHHHHHHHHcCCCCCCCCCCCceEEEEe-EEEECCCCcceeeecCC-eecHHH
Q 010356 293 EKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGF-GLVLGEDGKRLRTRFSE-VVRLVD 361 (512)
Q Consensus 293 ~~~d~~iyV~g~~q~~hf~~l~~~~~~~g~~~~~~~~~~~~~Hv~~-g~V~~~~g~kmSkR~G~-~v~l~d 361 (512)
+++|.+ .+|.||..|+.--..++..+|..-+..-..+...|..+ --|.+.+|+|||||.+| .|.+.|
T Consensus 138 ~~~d~v--pvG~DQ~~h~elaRdia~r~n~~~~~~f~~P~~l~~~~~~~l~gl~~~KMSKS~~~s~I~L~D 206 (328)
T TIGR00233 138 YQADLV--PVGIDQDQHLELTRDLAERFNKKFKNFFPKPESLISKFFPRLMGLSGKKMSKSDPNSAIFLTD 206 (328)
T ss_pred cCCCee--ecccccHHHHHHHHHHHHHhhhhcCcccCCChhhhccccCCCCCCCCCcCCCCCCCCeEeecC
Confidence 456655 58999999999888889888821000000233333222 12455557899999997 888765
No 108
>PTZ00126 tyrosyl-tRNA synthetase; Provisional
Probab=97.32 E-value=0.0031 Score=65.77 Aligned_cols=60 Identities=12% Similarity=0.073 Sum_probs=41.7
Q ss_pred cCCceEEEEeeCcccchHHHHHHHHHHcCCCCCCCCCCCceEEEEeEEEECC-CC-cceeeecCC-eecHHH
Q 010356 293 EKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGE-DG-KRLRTRFSE-VVRLVD 361 (512)
Q Consensus 293 ~~~d~~iyV~g~~q~~hf~~l~~~~~~~g~~~~~~~~~~~~~Hv~~g~V~~~-~g-~kmSkR~G~-~v~l~d 361 (512)
+++|.+ .+|.||..|+.-...++..+|+.+ .+.+.|. .+|.+- +| +|||||.+| .|.+.|
T Consensus 209 l~adiv--pvG~DQ~~~~~LaRdia~~~~~~~-----~~~~~~~--~~lpgL~dg~~KMSKS~~ns~I~L~D 271 (383)
T PTZ00126 209 LKADIC--QLGMDQRKVNMLAREYCDKKKIKK-----KPIILSH--HMLPGLLEGQEKMSKSDPNSAIFMED 271 (383)
T ss_pred cCCCEE--EeCccHHHHHHHHHHHHHHhCCCC-----Cceeecc--cccccCCCCCCCCCcCCCCCeecCCC
Confidence 466755 489999999987778888898632 2223343 456554 44 799999987 587765
No 109
>PRK12285 tryptophanyl-tRNA synthetase; Reviewed
Probab=97.30 E-value=0.0026 Score=66.07 Aligned_cols=56 Identities=18% Similarity=0.322 Sum_probs=41.3
Q ss_pred EEEeeCcccchHHHHHHHHHHc----CCCCCCCCCCCceEEEEeEEEECCCCcceeeec-CCeecHHHH
Q 010356 299 IYVTDVGQQLHFDMVFSAAKRA----GWLSADDSTYPKASHVGFGLVLGEDGKRLRTRF-SEVVRLVDL 362 (512)
Q Consensus 299 iyV~g~~q~~hf~~l~~~~~~~----g~~~~~~~~~~~~~Hv~~g~V~~~~g~kmSkR~-G~~v~l~dl 362 (512)
+-.+|.||+.|+.--..++..+ |+. .+...|. -++.+-+|+|||||. ++.|.+.|=
T Consensus 206 lvPvG~DQ~~h~~ltRdiA~r~n~~~gf~------~P~~l~~--~~lpgL~G~KMSkS~~~s~I~L~D~ 266 (368)
T PRK12285 206 LVPVGIDQDPHIRLTRDIAERLHGGYGFI------KPSSTYH--KFMPGLTGGKMSSSKPESAIYLTDD 266 (368)
T ss_pred EEEeccchHHHHHHHHHHHHHHhhhcCCC------CchhHhh--hcccCCCCCcCCCCCCCCeeeccCC
Confidence 3368999999999888888888 763 2333443 356666788999998 678887653
No 110
>cd00806 TrpRS_core catalytic core domain of tryptophanyl-tRNA synthetase. Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. TrpRS is a homodimer which attaches Tyr to the appropriate tRNA. TrpRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding
Probab=97.26 E-value=0.0047 Score=61.92 Aligned_cols=67 Identities=21% Similarity=0.209 Sum_probs=42.1
Q ss_pred cCCceEEEEeeCcccchHHHHHHHHHHcCCCCCCCCCCCceEEEEeEEEECCCC--cceeeecC-CeecHHH
Q 010356 293 EKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDG--KRLRTRFS-EVVRLVD 361 (512)
Q Consensus 293 ~~~d~~iyV~g~~q~~hf~~l~~~~~~~g~~~~~~~~~~~~~Hv~~g~V~~~~g--~kmSkR~G-~~v~l~d 361 (512)
++++.+ .+|.||..|+.....++..++...+..-..+...|....+|.+-+| +|||||.| |.|.|.|
T Consensus 136 ~~~~~v--pvG~DQ~~h~~l~Rdia~r~n~~~~~~~~~P~~l~~~~~~i~~l~g~~~KMSKS~~~~~I~L~d 205 (280)
T cd00806 136 YKACLV--PVGIDQDPHLELTRDIARRFNKLYGEIFPKPAALLSKGAFLPGLQGPSKKMSKSDPNNAIFLTD 205 (280)
T ss_pred ccCCEE--eeccccHHHHHHHHHHHHHhccccccccCCCeeeccCCCccccCCCCCCcccCCCCCCeEEeeC
Confidence 345544 4699999999998899988882100000123334431234544444 59999999 9998875
No 111
>PRK08560 tyrosyl-tRNA synthetase; Validated
Probab=97.25 E-value=0.0019 Score=66.21 Aligned_cols=63 Identities=17% Similarity=0.209 Sum_probs=45.4
Q ss_pred cCCceEEEEeeCcccchHHHHHHHHHHcCCCCCCCCCCCceEEEEeEEEECCCCc--ceeeec-CCeecHHHHHHH
Q 010356 293 EKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGK--RLRTRF-SEVVRLVDLLDE 365 (512)
Q Consensus 293 ~~~d~~iyV~g~~q~~hf~~l~~~~~~~g~~~~~~~~~~~~~Hv~~g~V~~~~g~--kmSkR~-G~~v~l~dll~~ 365 (512)
+++|.+ .+|.||..|+..-..++..+|+. .+...+ ..+|.+-+|. |||||. ||+|.+.|=-++
T Consensus 167 ~~ad~v--pvG~DQ~~h~~l~Rdia~~~n~~------~p~~l~--~~~l~~L~g~~~KMSKS~p~~~I~L~D~~~~ 232 (329)
T PRK08560 167 LDVDIA--VGGMDQRKIHMLAREVLPKLGYK------KPVCIH--TPLLTGLDGGGIKMSKSKPGSAIFVHDSPEE 232 (329)
T ss_pred hCCCEE--EechhHHHHHHHHHHhhHhcCCC------CceEEE--cCccCCCCCCCCCCcCCCCCCeecccCCHHH
Confidence 456755 48999999998888888888873 122233 3456666665 999999 999988764444
No 112
>cd00395 Tyr_Trp_RS_core catalytic core domain of tyrosinyl-tRNA and tryptophanyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS)/Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. These enzymes attach Tyr or Trp, respectively, to the appropriate tRNA. These class I enzymes are homodimers, which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=97.13 E-value=0.0044 Score=61.91 Aligned_cols=64 Identities=16% Similarity=0.026 Sum_probs=45.7
Q ss_pred cCCceEEEEeeCcccchHHHHHHHHHHcCCCCCCCCCCCceEEEEeEEEECCCCcceeeecCCeecHHHHHHH
Q 010356 293 EKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDE 365 (512)
Q Consensus 293 ~~~d~~iyV~g~~q~~hf~~l~~~~~~~g~~~~~~~~~~~~~Hv~~g~V~~~~g~kmSkR~G~~v~l~dll~~ 365 (512)
.+++.+ .+|.||..|+..-..++..++..+ .+.-.+. -+|.+.+|.|||||.||.+.++.+.+.
T Consensus 152 ~~~~~v--p~G~DQ~~~i~l~rdla~r~n~~~-----~p~~l~~--p~l~~l~G~KMSKS~~~~i~l~~~~ds 215 (273)
T cd00395 152 EGCDIQ--PGGSDQWGNITLGRELARRFNGFT-----IAEGLTI--PLVTKLDGPKFGKSESGPKWLDTEKTS 215 (273)
T ss_pred cCCcEE--EecHHHHHHHHHHHHHHHHhCCCC-----CCeEEee--ccccCCCCCcCCCCCCCCccccccCCC
Confidence 444544 589999999998888888885311 1333343 467888899999999999877655443
No 113
>KOG0437 consensus Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=96.98 E-value=0.0036 Score=68.18 Aligned_cols=165 Identities=16% Similarity=0.163 Sum_probs=102.3
Q ss_pred CCceEEEEeeCCCCCCCCcccchhhhhHHHHHHHHHHHCCCeEEEeeccCccchHHHHHHHHHHh---hCCCCCccCccc
Q 010356 83 RVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFE---KFPNSEDANETA 159 (512)
Q Consensus 83 ~~~~v~Ve~~spNp~~~lHvGH~R~~iiGD~lar~l~~~G~~V~~~~~i~D~G~qi~~l~~~~~~---~~~~~~~~~~~~ 159 (512)
...|..+.|.-|..||.||+||+.|..=.|+-+-+-|..|++|.+-+...-.|.+|.-.+..+.. .+|.......+.
T Consensus 42 ~~~Kff~tfpyPYMNG~LHlGH~FslSK~eFa~~y~rL~Gk~vLfPfgFHCTGMPI~A~AdKLkrEie~fG~ppdf~~e~ 121 (1080)
T KOG0437|consen 42 SKPKFFVTFPYPYMNGRLHLGHAFSLSKVEFASGYERLQGKNVLFPFGFHCTGMPIKASADKLKREIELFGCPPDFPEEE 121 (1080)
T ss_pred ccCceeEeccccccCceeeccceeehhhhHHHHHHHHhcCceEEeecccccCCCccHHhHHHHHHHHHHhCCCCCCchhh
Confidence 35689999999999999999999999999999999999999999999999999999866655432 232211111111
Q ss_pred HHHHHHHHHHHhcc-cCCChHH-----HHHHH--------HHHHHhccCChHHHHH--HHHHHHHHHHHHHHHHHHcCCe
Q 010356 160 IGELQEFYRRSKNR-FDSDPAF-----KERAQ--------QAVVRLQSGEPKYHEA--WAQICEISRKEFDKVYKRLRVD 223 (512)
Q Consensus 160 i~~l~~~y~~~~~~-~~~~~~~-----~~~~~--------~~~~~le~gd~~~~~~--w~~~~~~~~~~~~~~~~~L~I~ 223 (512)
..++. .+.+.. .-.++.+ +..|+ +++..|---|.|+... -......+--.-.+++.++|..
T Consensus 122 eeEv~---eev~~~~~~~~~k~kgKKsk~aaK~g~~kYQw~IM~slGl~deEI~~F~d~~~WL~yFPpLc~~dlk~~gl~ 198 (1080)
T KOG0437|consen 122 EEEVE---EEVKTEDAIEDVKFKGKKSKAAAKTGGQKYQWEIMESLGLPDEEIKKFADPKHWLYYFPPLCERDLKRFGLG 198 (1080)
T ss_pred hhhhh---hcccccccccccccccchhhHHHhhcccchhHHHHHHcCCCHHHhhcccChhHHHHhCChHHHHHHHHhCCC
Confidence 11110 000000 0000000 11111 3444443334332210 1112334445557899999999
Q ss_pred Eeeecc-------ccccCchHHHHHHHHhCCCee
Q 010356 224 LEEKGE-------SFYNPYIPGVIDELSKQGLVE 250 (512)
Q Consensus 224 f~~~~e-------s~~~~~v~~~~~~L~~~g~~~ 250 (512)
.||... ..|...|...+..|.+.|.+.
T Consensus 199 iDWRRSFITTDvNpYyDsFVRWQ~n~L~~~gkI~ 232 (1080)
T KOG0437|consen 199 IDWRRSFITTDVNPYYDSFVRWQFNKLKEAGKIK 232 (1080)
T ss_pred cceeeeeeecccchhHHHHHHHHHHHHHhcCCcc
Confidence 998632 245567899999999999764
No 114
>PLN02486 aminoacyl-tRNA ligase
Probab=96.94 E-value=0.074 Score=55.54 Aligned_cols=53 Identities=17% Similarity=0.246 Sum_probs=37.8
Q ss_pred EeeCcccchHHHHHHHHHHcCCCCCCCCCCCceEEEEeEEEECCCC--cceeeecCC-eecHHH
Q 010356 301 VTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDG--KRLRTRFSE-VVRLVD 361 (512)
Q Consensus 301 V~g~~q~~hf~~l~~~~~~~g~~~~~~~~~~~~~Hv~~g~V~~~~g--~kmSkR~G~-~v~l~d 361 (512)
=+|.||+.||.....++..+|+. .+...|.. ++-+-+| .|||||.+| +|.|.|
T Consensus 224 PvG~DQd~~~~ltRdia~r~~~~------kp~~~~~~--~lp~L~g~~~KMSkS~~nsaI~L~D 279 (383)
T PLN02486 224 PCAIDQDPYFRMTRDVAPRLGYY------KPALIESR--FFPALQGESGKMSASDPNSAIYVTD 279 (383)
T ss_pred ecccchHHHHHHHHHHHHHhCCC------Ccceeccc--cccCCCCCCCcCcCcCCCCeeeccC
Confidence 36999999999988999999873 23344532 2333333 599999987 688876
No 115
>COG0162 TyrS Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=96.78 E-value=0.002 Score=67.18 Aligned_cols=51 Identities=18% Similarity=0.077 Sum_probs=36.7
Q ss_pred EEEeeCcccchHHHHHHHHHHcCCCCCCCCCCCceEEEEeEEEECCCCcceeeecCCee
Q 010356 299 IYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVV 357 (512)
Q Consensus 299 iyV~g~~q~~hf~~l~~~~~~~g~~~~~~~~~~~~~Hv~~g~V~~~~g~kmSkR~G~~v 357 (512)
+=+-|.||...+..-...+..+|+. .+...|+ -++.+.+|+|||||.|+.+
T Consensus 183 lq~GG~DQ~~ni~~grdl~rr~g~~------~~~~lt~--PLL~~ldG~KmgKs~~~a~ 233 (401)
T COG0162 183 LQLGGSDQWGNILAGRDLIRRLGQK------KVVGLTT--PLLTGLDGKKMGKSEGGAV 233 (401)
T ss_pred hhcCChHHHHHHHHHHHHHHHhCCC------CeEEEEe--ccccCCCCCcccccCCCce
Confidence 4457888876666555777888873 2344555 5688889999999999944
No 116
>TIGR00234 tyrS tyrosyl-tRNA synthetase. This tyrosyl-tRNA synthetase model starts picking up tryptophanyl-tRNA synthetases at scores of 0 and below. The proteins found by this model have a deep split between two groups. One group contains bacterial and organellar eukaryotic examples. The other contains archaeal and cytosolic eukaryotic examples.
Probab=96.65 E-value=0.015 Score=60.82 Aligned_cols=58 Identities=12% Similarity=0.012 Sum_probs=40.6
Q ss_pred CCceEEEEeeCcccchHHHHHHHHHHcCCCCCCCCCCCceEEEEeEEEECCCCcceeeecCCeecHHH
Q 010356 294 KAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVD 361 (512)
Q Consensus 294 ~~d~~iyV~g~~q~~hf~~l~~~~~~~g~~~~~~~~~~~~~Hv~~g~V~~~~g~kmSkR~G~~v~l~d 361 (512)
+.| +-+.|.||..|+.....+++..+... .. -+...++.+.+|.|||||.||.|++++
T Consensus 177 ~~d--i~~gG~DQ~~ni~~g~dLar~~~~~~------~~--~~t~pLl~~~dg~KmgKS~~~~i~l~~ 234 (377)
T TIGR00234 177 NVD--LQIGGSDQWGNIRKGRDLIRRNLPSL------GF--GLTVPLLTPADGEKMGKSGGGAVSLDE 234 (377)
T ss_pred cCC--eeEecchhHHHHHHHHHHHHHhcCCC------ce--eeceeeecCCCCCCccCCCCCcccCCc
Confidence 445 44689999999998877777765321 11 122245666789999999999888764
No 117
>KOG0435 consensus Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=96.54 E-value=0.012 Score=63.86 Aligned_cols=123 Identities=13% Similarity=0.103 Sum_probs=70.0
Q ss_pred ceeeecCCeecHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhchhhHHHHhhccCC-CCCccccccccccccCC
Q 010356 348 RLRTRFSEVVRLVDLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNR-LTNYTFSFDQMLNDKGN 426 (512)
Q Consensus 348 kmSkR~G~~v~l~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~airy~~L~~~~-~~~~~Fd~~~~~~~~~~ 426 (512)
|||||++|+|.+.|++++ +|+|++|.+.|-..+ ..+++.+-..+
T Consensus 617 KMSKSK~NGVdP~~~v~~-----------------------------yG~D~tRl~ilf~ap~~~~~nW~es~i------ 661 (876)
T KOG0435|consen 617 KMSKSKHNGVDPADVVLE-----------------------------YGVDTTRLYILFAAPPRDPINWNESAI------ 661 (876)
T ss_pred HhhhcccCCCCHHHHHHH-----------------------------hCchHHHHHHHhhCCcccccccccccc------
Confidence 899999999999999998 799999999997754 77777764333
Q ss_pred ch--HHHHHHHHHHHHHHHhhcCChhhhhhcCCCCCCCHHHHHHHHHHHhhHHHHHHHHHhcC-hHHHHHHHHHHHHHHh
Q 010356 427 TA--VYLLYAHARICSIIRKSGKDIEELKKTGSLVLDHADERALGLHLLHFSEVIEEALTNLL-PNVVCEYLYNLSEYFT 503 (512)
Q Consensus 427 ~g--~ylqY~~aR~~sil~k~~~~~~~~~~~~~~~l~~~~e~~L~~~l~~~~~~v~~a~~~~~-p~~l~~yl~~La~~fn 503 (512)
.| -++|-..+=...|++.-..+.. ............+.++|......|..-+...++... .+.+..-++.|...+.
T Consensus 662 ~Gi~rwl~riw~l~~~~~~ar~~g~~-~d~~~~td~~dae~~kl~~~~n~fi~~vt~~~e~~~slNtaIS~~m~ltN~l~ 740 (876)
T KOG0435|consen 662 PGIKRWLQRIWALVSQILQARDDGKA-KDLKKLTDGFDAETRKLKETYNFFIKQVTEHYEVLFSLNTAISDMMGLTNALK 740 (876)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhcCCc-ccccccccccchhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23 2555444333344332111110 000001111122334566666666555555555433 4555566666666555
Q ss_pred cch
Q 010356 504 RFY 506 (512)
Q Consensus 504 ~fY 506 (512)
+-+
T Consensus 741 ~a~ 743 (876)
T KOG0435|consen 741 KAL 743 (876)
T ss_pred Hhh
Confidence 444
No 118
>PTZ00348 tyrosyl-tRNA synthetase; Provisional
Probab=95.89 E-value=0.041 Score=61.35 Aligned_cols=61 Identities=13% Similarity=0.053 Sum_probs=40.8
Q ss_pred cCCceEEEEeeCcccchHHHHHHHHHHcCCCCCCCCCCCceEEEEeEEEECCC-C-cceeeec-CCeecHHHH
Q 010356 293 EKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGED-G-KRLRTRF-SEVVRLVDL 362 (512)
Q Consensus 293 ~~~d~~iyV~g~~q~~hf~~l~~~~~~~g~~~~~~~~~~~~~Hv~~g~V~~~~-g-~kmSkR~-G~~v~l~dl 362 (512)
+++|.+ .+|.||..|+.-...++..+|..+ .+...|. .+|.+-+ | .|||||. +|+|.+.|=
T Consensus 174 l~adiv--pvG~DQ~qh~eLaRdia~~~g~~~-----kpvil~~--~~LpGL~gg~~KMSKS~p~naI~L~Ds 237 (682)
T PTZ00348 174 LKADIC--QLGLDQRKVNMLAREYCDLIGRKL-----KPVILSH--HMLAGLKQGQAKMSKSDPDSAIFMEDT 237 (682)
T ss_pred cCCCEE--EeCccHHHHHHHHHHHHHHhCCCC-----Cceeccc--ccCcCCCCCCCcCCCCCCCCeecccCC
Confidence 456755 489999999987777888888532 1223343 3454332 3 6999999 689988763
No 119
>cd07375 Anticodon_Ia_like Anticodon-binding domain of class Ia aminoacyl tRNA synthetases and similar domains. This domain is found in a variety of class Ia aminoacyl tRNA synthetases, C-terminal to the catalytic core domain. It recognizes and specifically binds to the anticodon of the tRNA. Aminoacyl tRNA synthetases catalyze the transfer of cognate amino acids to the 3'-end of their tRNAs by specifically recognizing cognate from non-cognate amino acids. Members include valyl-, leucyl-, isoleucyl-, cysteinyl-, arginyl-, and methionyl-tRNA synthethases. This superfamily also includes a domain from MshC, an enzyme in the mycothiol biosynthetic pathway.
Probab=95.25 E-value=0.097 Score=44.15 Aligned_cols=76 Identities=20% Similarity=0.241 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHHHhhcCChhhhhhcCCCCCCCHHHHHHHHHHHhhHHHHHHHHHhcChHHHHHHHHHHHHHHhcchhcc
Q 010356 431 LLYAHARICSIIRKSGKDIEELKKTGSLVLDHADERALGLHLLHFSEVIEEALTNLLPNVVCEYLYNLSEYFTRFYSNC 509 (512)
Q Consensus 431 lqY~~aR~~sil~k~~~~~~~~~~~~~~~l~~~~e~~L~~~l~~~~~~v~~a~~~~~p~~l~~yl~~La~~fn~fY~~~ 509 (512)
.++.+.|+++.+.+...+.. +..+... ..+.+.+|+..+..+++.+.+++++++++.++..+++++...|.|++..
T Consensus 10 ~~n~~~r~~~~~~~~~~~~~--~~~~~~~-~~~~d~~l~~~~~~~~~~~~~~~e~~~~~~a~~~i~~~~~~~n~y~~~~ 85 (117)
T cd07375 10 FLNRLYRLLSFFRKALGGTQ--PKWDNEL-LEEADRELLARLQEFIKRTTNALEALDPTTAVQELFKFTNELNWYLDEL 85 (117)
T ss_pred HHHHHHHHHHHHHHhcCCCC--CCcChhh-cCHhhHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccHHHHHh
Confidence 56777888888776543221 1100001 2456788999999999999999999999999999999999999888643
No 120
>COG0180 TrpS Tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=94.99 E-value=0.061 Score=54.35 Aligned_cols=62 Identities=19% Similarity=0.220 Sum_probs=39.0
Q ss_pred EeeCcccchHHHHHHHHHHcCCCCCCCCCCCceEEEEeEEEECCCC-cceeeecCC-eecHHHH
Q 010356 301 VTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDG-KRLRTRFSE-VVRLVDL 362 (512)
Q Consensus 301 V~g~~q~~hf~~l~~~~~~~g~~~~~~~~~~~~~Hv~~g~V~~~~g-~kmSkR~G~-~v~l~dl 362 (512)
=+|.||+.|+..-..+++.++..-...-..+...+..-.+|.+-+| +|||||.+| +|.|.|=
T Consensus 150 PVG~DQ~qHleLtRDiA~rfn~~y~~~f~~P~~~~~~~~~i~gL~g~~KMSkS~~ns~I~L~D~ 213 (314)
T COG0180 150 PVGEDQDQHLELTRDIARRFNHLYGEVFPLPEALISKVARLPGLDGPGKMSKSDPNSAIFLLDD 213 (314)
T ss_pred ccCCCchHHHHHHHHHHHHHHhhcCCccCCccccccCCCcccCCCCCCcccccCCCCeeeccCC
Confidence 4899999999998889988872100000012222221135555566 799999999 8877543
No 121
>cd00805 TyrRS_core catalytic core domain of tyrosinyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS) catalytic core domain. TyrRS is a homodimer which attaches Tyr to the appropriate tRNA. TyrRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formationof the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=94.54 E-value=0.027 Score=56.11 Aligned_cols=52 Identities=12% Similarity=0.169 Sum_probs=41.2
Q ss_pred EEEeeCcccchHHHHHHHHHHcCCCCCCCCCCCceEEEEeEEEECCCCcceeeecCCeec
Q 010356 299 IYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVR 358 (512)
Q Consensus 299 iyV~g~~q~~hf~~l~~~~~~~g~~~~~~~~~~~~~Hv~~g~V~~~~g~kmSkR~G~~v~ 358 (512)
+-++|.||..|+..-..+++.+++.. + .++...++.+.+|+|||||.||.++
T Consensus 154 l~~~G~DQ~~~i~~~rd~a~r~~~~~------~--~~l~~~ll~~l~G~KMSKS~~~~~~ 205 (269)
T cd00805 154 LQLGGSDQRGNITLGRDLIRKLGYKK------V--VGLTTPLLTGLDGGKMSKSEGNAIW 205 (269)
T ss_pred eeEecHHHHHHHHHHHHHHHHhCCCC------c--EEEeeccccCCCCCcccCCCCCccc
Confidence 33689999999998889999888731 2 3344467888899999999999985
No 122
>KOG0437 consensus Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=94.42 E-value=0.14 Score=56.25 Aligned_cols=61 Identities=7% Similarity=0.096 Sum_probs=43.4
Q ss_pred CCCCceEEEEeEEEECCCCcceeeecCCeecHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhchhhHHHHhhcc
Q 010356 328 STYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKN 407 (512)
Q Consensus 328 ~~~~~~~Hv~~g~V~~~~g~kmSkR~G~~v~l~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~airy~~L~~ 407 (512)
.|+..+... |.++. +++|||||.||+.+|++-+++ +|+++.|+.+.-.
T Consensus 693 ~WPkgiraN--GHLmL-NsEKMSKSTGNfmTL~qaieK-----------------------------Fgad~tRlalAda 740 (1080)
T KOG0437|consen 693 KWPKGIRAN--GHLML-NSEKMSKSTGNFMTLEQAIEK-----------------------------FGADGTRLALADA 740 (1080)
T ss_pred cCccceeeC--ceEEe-cchhhccccCCeeeHHHHHHH-----------------------------hCccceeeeeecc
Confidence 344444433 44442 467999999999999998888 8999999987754
Q ss_pred -CCCCCcccccccc
Q 010356 408 -NRLTNYTFSFDQM 420 (512)
Q Consensus 408 -~~~~~~~Fd~~~~ 420 (512)
....|.+|....+
T Consensus 741 GD~veDANF~ea~A 754 (1080)
T KOG0437|consen 741 GDGVEDANFVEANA 754 (1080)
T ss_pred cCCcccchhHHhcc
Confidence 3456777765543
No 123
>PRK12556 tryptophanyl-tRNA synthetase; Provisional
Probab=94.06 E-value=0.041 Score=56.48 Aligned_cols=65 Identities=18% Similarity=0.258 Sum_probs=41.8
Q ss_pred cCCceEEEEeeCcccchHHHHHHHHHHcCCCCCCCCCCCceE---EEEeEEEECCCCcceeeecCCeecHHH
Q 010356 293 EKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKAS---HVGFGLVLGEDGKRLRTRFSEVVRLVD 361 (512)
Q Consensus 293 ~~~d~~iyV~g~~q~~hf~~l~~~~~~~g~~~~~~~~~~~~~---Hv~~g~V~~~~g~kmSkR~G~~v~l~d 361 (512)
+++|.+ .+|.||..|+.--..++..++...+..-..+... |. -++.+-+|+|||||.+|.|.+.|
T Consensus 148 ~~~d~V--pvG~DQ~qhleLtRdiA~rfn~~yg~~f~~P~~~~~~~~--~~l~gLdg~KMSKS~~n~I~L~D 215 (332)
T PRK12556 148 FQATHV--PVGKDQIQHIEIARDIATYFNHTFGDTFTLPEYVIQEEG--AILPGLDGRKMSKSYGNVIPLFA 215 (332)
T ss_pred ccCCEE--EeccccHHHHHHHHHHHHHHHHhccccCCCceecccccc--ccccCCCCCCCCCCCCCcccccC
Confidence 456655 4899999999988888887762100000012111 33 34556678899999999887654
No 124
>PRK12284 tryptophanyl-tRNA synthetase; Reviewed
Probab=93.61 E-value=0.08 Score=55.74 Aligned_cols=67 Identities=16% Similarity=0.152 Sum_probs=42.8
Q ss_pred cCCceEEEEeeCcccchHHHHHHHHHHcCCCCC--CCCCCCceEEEEeEEEECCCCcceeeecCCeecHHH
Q 010356 293 EKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSA--DDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVD 361 (512)
Q Consensus 293 ~~~d~~iyV~g~~q~~hf~~l~~~~~~~g~~~~--~~~~~~~~~Hv~~g~V~~~~g~kmSkR~G~~v~l~d 361 (512)
+++|.+ -+|.||..|..--..++..++...+ .-+.+....+...-+|.+-+|+|||||.||.|.+.|
T Consensus 147 y~ad~V--PVG~DQ~qHlELaRdIA~rFN~~yg~~~F~~Pe~~i~~~~~~I~gLdg~KMSKS~~n~I~L~D 215 (431)
T PRK12284 147 FNAHKV--PVGRDQIQHIEMARDIAQRFNHLYGGEFFVLPEAVIEESVATLPGLDGRKMSKSYDNTIPLFA 215 (431)
T ss_pred cCCCEE--EEcchhHHHHHHHHHHHHHHhhhcCCcccCCCccccccccccccCCCCccccCCCCCEeeecC
Confidence 456666 4899999999988888888763210 000111122111134666678999999999997765
No 125
>PF00579 tRNA-synt_1b: tRNA synthetases class I (W and Y); InterPro: IPR002305 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2JAN_A 3P0J_B 3P0I_B 3P0H_B 1YID_C 2A4M_C 1YIA_C 1YI8_C 2EL7_A 3PRH_A ....
Probab=92.67 E-value=0.086 Score=53.19 Aligned_cols=67 Identities=19% Similarity=0.256 Sum_probs=45.6
Q ss_pred cCCceEEEEeeCcccchHHHHHHHHHHcCCCCCCCCCCCceEEEEeEEEECCCCc-ceeeecCC-eecHHHHHHH
Q 010356 293 EKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGK-RLRTRFSE-VVRLVDLLDE 365 (512)
Q Consensus 293 ~~~d~~iyV~g~~q~~hf~~l~~~~~~~g~~~~~~~~~~~~~Hv~~g~V~~~~g~-kmSkR~G~-~v~l~dll~~ 365 (512)
.++| +=+.|.||..|+..-..++..+|.... -..+...|. .++.+.+|. |||||.|| .|.+.|=-+.
T Consensus 148 l~~~--~~~~G~DQ~~~~~l~rd~a~k~~~~~~--~~~p~~l~~--~~l~~l~G~~KMSKS~~ns~I~L~d~~~~ 216 (292)
T PF00579_consen 148 LKAD--LVPGGIDQRGHIELARDLARKFNYKEI--FPKPAGLTS--PLLPGLDGQKKMSKSDPNSAIFLDDSPEE 216 (292)
T ss_dssp TTHS--EEEEEGGGHHHHHHHHHHHHHHTHHST--SSS-EEEEE--TCBBSTTSSSBTTTTTTGGS-BTTTTHHH
T ss_pred eccc--cccccchHHHHHHHHHHHHhhhccccc--ccCchheee--ccccccCCccccCccCCccEEEEeccchh
Confidence 3445 336899999999988888888887300 002333343 467778888 99999999 8888765444
No 126
>cd07957 Anticodon_Ia_Met Anticodon-binding domain of methionyl tRNA synthetases. This domain is found in methionyl tRNA synthetases (MetRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon (CAU). MetRS catalyzes the transfer of methionine to the 3'-end of its tRNA.
Probab=91.38 E-value=1.3 Score=38.07 Aligned_cols=73 Identities=12% Similarity=0.003 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHhhcCChhhhhhcCCCCCCCHHHHHHHHHHHhhHHHHHHHHHhcChHHHHHHHHHHHHHHhcchhcc
Q 010356 432 LYAHARICSIIRKSGKDIEELKKTGSLVLDHADERALGLHLLHFSEVIEEALTNLLPNVVCEYLYNLSEYFTRFYSNC 509 (512)
Q Consensus 432 qY~~aR~~sil~k~~~~~~~~~~~~~~~l~~~~e~~L~~~l~~~~~~v~~a~~~~~p~~l~~yl~~La~~fn~fY~~~ 509 (512)
+.-..|+.++..+...+.. +. ... .++.+.+++..+.+....+.+++++++++.++.-+++++...|.|.+..
T Consensus 10 gnll~r~~~~~~~~~~~~~--~~--~~~-~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~n~y~~~~ 82 (129)
T cd07957 10 GNLVNRTLNMASKYFGGVV--PE--FGG-LTEEDEELLEEAEELLEEVAEAMEELEFRKALEEIMELARAANKYIDET 82 (129)
T ss_pred hhHHHHHHHHHHHHcCCcC--CC--CCC-CCcccHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhhccC
Confidence 3344788888877643321 11 111 2345677999999999999999999999999999999999999988743
No 127
>PRK00927 tryptophanyl-tRNA synthetase; Reviewed
Probab=91.30 E-value=0.23 Score=51.08 Aligned_cols=68 Identities=21% Similarity=0.261 Sum_probs=43.4
Q ss_pred cCCceEEEEeeCcccchHHHHHHHHHHcCCCCCCCCCCCceEEEEe-EEEECCCCc--ceeeecC---CeecHHHH
Q 010356 293 EKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGF-GLVLGEDGK--RLRTRFS---EVVRLVDL 362 (512)
Q Consensus 293 ~~~d~~iyV~g~~q~~hf~~l~~~~~~~g~~~~~~~~~~~~~Hv~~-g~V~~~~g~--kmSkR~G---~~v~l~dl 362 (512)
+++|.+ .+|.||..|+..-..++..++...+..-..+...|..+ .+|.+-+|. |||||.+ |.|.+.|=
T Consensus 137 ~~~div--pvG~DQ~~h~elaRdia~~~n~~~~~~f~~P~~i~~~~~~~l~gL~g~~~KMSKS~~~~~~~I~l~D~ 210 (333)
T PRK00927 137 YKADLV--PVGEDQKQHLELTRDIARRFNNLYGEVFPVPEPLIPKVGARVMGLDGPTKKMSKSDPNDNNTINLLDD 210 (333)
T ss_pred cCCCEE--eeccchHHHHHHHHHHHHHhhhhccccCCCChhhhccccccccCCCCCCCCCCCCCCCCCCeEEeeCC
Confidence 456655 48999999999888888887742100000223333322 345555554 9999999 89988763
No 128
>cd07958 Anticodon_Ia_Leu_BEm Anticodon-binding domain of bacterial and eukaryotic mitochondrial leucyl tRNA synthetases. This domain is found in leucyl tRNA synthetases (LeuRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain. In contrast to other class Ia enzymes, the anticodon is not used as an identity element in LeuRS (with exceptions such as Saccharomyces cerevisiae and some other eukaryotes). No anticodon-binding site can be defined for this family, which includes bacterial and eukaryotic mitochondrial members, as well as LeuRS from the archaeal Halobacteria. LeuRS catalyzes the transfer of leucine to the 3'-end of its tRNA.
Probab=89.71 E-value=2.4 Score=35.75 Aligned_cols=73 Identities=12% Similarity=0.172 Sum_probs=53.9
Q ss_pred HHHHHHHHHHhhcCChhhhhhcCCCCCCCHHHHHHHHHHHhhHHHHHHHHHhcChHHHHHHHHHHHHHHhcchhcc
Q 010356 434 AHARICSIIRKSGKDIEELKKTGSLVLDHADERALGLHLLHFSEVIEEALTNLLPNVVCEYLYNLSEYFTRFYSNC 509 (512)
Q Consensus 434 ~~aR~~sil~k~~~~~~~~~~~~~~~l~~~~e~~L~~~l~~~~~~v~~a~~~~~p~~l~~yl~~La~~fn~fY~~~ 509 (512)
-..|+-++.++...+. .+......+ .+.++.++..+.+..+.+.+++++++++.+++-+++++..+|+|++..
T Consensus 12 ~l~R~~~~~~~~~~~~--~~~~~~~~~-~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~i~~~~~~~n~~~~~~ 84 (117)
T cd07958 12 FLNRVWRLVTELAEAL--AAPAAAAEL-SEEDKELRRKLHKTIKKVTEDIERLRFNTAIAALMELVNALYKYKKKD 84 (117)
T ss_pred HHHHHHHHHHHHHhhc--ccccccccc-chhhHHHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHhhccc
Confidence 3468888877653221 111000112 345678999999999999999999999999999999999999998753
No 129
>PRK12282 tryptophanyl-tRNA synthetase II; Reviewed
Probab=89.57 E-value=0.37 Score=49.54 Aligned_cols=65 Identities=20% Similarity=0.229 Sum_probs=41.1
Q ss_pred cCCceEEEEeeCcccchHHHHHHHHHHcCCCCCCCCCC-Cc--eEEEEeEEEECCCC-cceeeecCCeecHHH
Q 010356 293 EKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTY-PK--ASHVGFGLVLGEDG-KRLRTRFSEVVRLVD 361 (512)
Q Consensus 293 ~~~d~~iyV~g~~q~~hf~~l~~~~~~~g~~~~~~~~~-~~--~~Hv~~g~V~~~~g-~kmSkR~G~~v~l~d 361 (512)
+++|.+ .+|.||..|+.-...++..+|...+.+-+. +. ..| ..+|.+-+| +|||||.++.|.+.|
T Consensus 141 ~~~d~v--pvG~DQ~~h~~laRdiA~~~n~~~~~~~~~~p~~~~~~--~~~i~~L~g~~KMSKS~~~~I~L~D 209 (333)
T PRK12282 141 FKATLV--PVGDDQLPMIEQTREIVRRFNSLYGTDVLVEPEALLPE--AGRLPGLDGKAKMSKSLGNAIYLSD 209 (333)
T ss_pred hCCCEE--EeccccHHHHHHHHHHHHHHhhhcCCccccCchhcccC--CCcccCCCCCCcCCCCCCCeeeeeC
Confidence 356655 589999999999888888887311000000 11 112 124544455 799999999998765
No 130
>PRK01233 glyS glycyl-tRNA synthetase subunit beta; Validated
Probab=88.39 E-value=2.6 Score=47.43 Aligned_cols=83 Identities=22% Similarity=0.237 Sum_probs=65.8
Q ss_pred chHHHHHHHHHHHHHHHhhcCChhhhhhcCCCCCCCHHHHHHHHHHHhhHHHHHHHHHhcChHHHHHHHHHHHHHHhcch
Q 010356 427 TAVYLLYAHARICSIIRKSGKDIEELKKTGSLVLDHADERALGLHLLHFSEVIEEALTNLLPNVVCEYLYNLSEYFTRFY 506 (512)
Q Consensus 427 ~g~ylqY~~aR~~sil~k~~~~~~~~~~~~~~~l~~~~e~~L~~~l~~~~~~v~~a~~~~~p~~l~~yl~~La~~fn~fY 506 (512)
.+.-+.-++.|+..|++|...... ...+...+.+++|++|...+......+..+....+...+.+.|.+|....+.||
T Consensus 567 ~~~~l~~~~kRv~NIl~k~~~~~~--~~v~~~l~~~~~E~~L~~~~~~~~~~~~~~~~~~~y~~~l~~l~~L~~~Id~FF 644 (682)
T PRK01233 567 EFKALAAANKRVSNILKKAEGKVS--GEVDPALFEEPAEKALYAALEELKPKVEPALAAGDYQAALEALAALRPPVDAFF 644 (682)
T ss_pred hHHHHHHHHHHHHHHHhccccccC--CccChhHcCCHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHhhhhHHHHHh
Confidence 344566799999999998753211 012234567899999999999988888888888899999999999999999999
Q ss_pred hcccC
Q 010356 507 SNCQV 511 (512)
Q Consensus 507 ~~~~v 511 (512)
++.-|
T Consensus 645 D~VmV 649 (682)
T PRK01233 645 DNVMV 649 (682)
T ss_pred CCCee
Confidence 98655
No 131
>PRK12283 tryptophanyl-tRNA synthetase; Reviewed
Probab=88.07 E-value=0.48 Score=49.53 Aligned_cols=37 Identities=22% Similarity=0.460 Sum_probs=25.2
Q ss_pred eeCCCCCCCCcccchhhhhHHHHHHHHHH-HCCCeEEEeeccCcc
Q 010356 91 FSSPNIAKEMHVGHLRSTIIGDSLARMLE-FSNVEVLRRNHVGDW 134 (512)
Q Consensus 91 ~~spNp~~~lHvGH~R~~iiGD~lar~l~-~~G~~V~~~~~i~D~ 134 (512)
+++--|+|.+|+||.-+++ .++.+ ..|+++. ..|-||
T Consensus 6 ~sGiqPSG~~HLGnylG~i-----k~wv~lq~~~~~~--~~IADl 43 (398)
T PRK12283 6 LSGMRPTGRLHLGHYHGVL-----KNWVKLQHEYECF--FFVADW 43 (398)
T ss_pred EEEeCCCCcchHHHHHHHH-----HHHHHHhcCCcEE--EEeecH
Confidence 7889999999999976543 34443 2367654 556664
No 132
>cd07959 Anticodon_Ia_Leu_AEc Anticodon-binding domain of archaeal and eukaryotic cytoplasmic leucyl tRNA synthetases. This domain is found in leucyl tRNA synthetases (LeuRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain. In contrast to other class Ia enzymes, the anticodon is not used as an identity element in LeuRS (with exceptions such as Saccharomyces cerevisiae and some other eukaryotes). No anticodon-binding site can be defined for this family, which includes archaeal and eukaryotic cytoplasmic members. LeuRS catalyzes the transfer of leucine to the 3'-end of its tRNA.
Probab=86.11 E-value=4.2 Score=34.33 Aligned_cols=69 Identities=14% Similarity=0.004 Sum_probs=51.8
Q ss_pred HHHHHHHHHhhcCChhhhhhcCCCCCCCHHHHHHHHHHHhhHHHHHHHHHhcChHHHHHHH-HHHHHHHhcchhcc
Q 010356 435 HARICSIIRKSGKDIEELKKTGSLVLDHADERALGLHLLHFSEVIEEALTNLLPNVVCEYL-YNLSEYFTRFYSNC 509 (512)
Q Consensus 435 ~aR~~sil~k~~~~~~~~~~~~~~~l~~~~e~~L~~~l~~~~~~v~~a~~~~~p~~l~~yl-~~La~~fn~fY~~~ 509 (512)
..|+-++.++...+. .+. ..+ ++.++.++..+......+.+++++++++.++..+ +++....|.|.+.+
T Consensus 13 l~R~~~~~~~~~~~~--~~~---~~~-~~~d~~~~~~~~~~i~~v~~~~~~~~f~~a~~~~~~~~~~~~~~Y~~~~ 82 (117)
T cd07959 13 LERFYELAEELIETE--GEL---EEL-TFIDRWLLSRLNRLIKETTEAYENMQFREALKEGLYELQNDLDWYRERG 82 (117)
T ss_pred HHHHHHHHHHHHhcc--CCc---ccc-chhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 368888877742221 111 112 4567889999999999999999999999999997 99999888776643
No 133
>TIGR00211 glyS glycyl-tRNA synthetase, tetrameric type, beta subunit. The glycyl-tRNA synthetases differ even among the eubacteria in oligomeric structure. In Escherichia coli and most others, it is a heterodimer of two alpha chains and two beta chains, encoded by tandem genes. The genes are similar, but fused, in Chlamydia trachomatis. By contrast, the glycyl-tRNA synthetases of Thermus thermophilus and of archaea and eukaryotes differ considerably; they are homodimeric, mutually similar, and not detected by this model.
Probab=85.41 E-value=5.5 Score=44.99 Aligned_cols=82 Identities=20% Similarity=0.209 Sum_probs=64.6
Q ss_pred hHHHHHHHHHHHHHHHhhcCChhhhhhcCCCCCCCHHHHHHHHHHHhhHHHHHHHHHhcChHHHHHHHHHHHHHHhcchh
Q 010356 428 AVYLLYAHARICSIIRKSGKDIEELKKTGSLVLDHADERALGLHLLHFSEVIEEALTNLLPNVVCEYLYNLSEYFTRFYS 507 (512)
Q Consensus 428 g~ylqY~~aR~~sil~k~~~~~~~~~~~~~~~l~~~~e~~L~~~l~~~~~~v~~a~~~~~p~~l~~yl~~La~~fn~fY~ 507 (512)
+.-+.-++.|+..|++|...... ...+...+.+++|+.|...+..+...+...+..-+...+...|.+|....+.||+
T Consensus 578 ~~~l~~a~kRv~NIl~k~~~~~~--~~v~~~l~~~~~E~~L~~~~~~~~~~~~~~~~~~~y~~~l~~l~~L~~~Id~FFD 655 (691)
T TIGR00211 578 AEALAAANKRVANILKKGNPVLS--SEIQANLFKEPKEKALFEAVLAIKMNAQESFESGDYETALEALAELRAPVDEFFD 655 (691)
T ss_pred HHHHHHHHHHHHHHHhccccccc--CccChhHcCCHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHhhhHHHHHhC
Confidence 44677799999999999753211 0122345678999999999999877777777777889999999999999999999
Q ss_pred cccC
Q 010356 508 NCQV 511 (512)
Q Consensus 508 ~~~v 511 (512)
+.-|
T Consensus 656 ~VmV 659 (691)
T TIGR00211 656 SVMV 659 (691)
T ss_pred CCEe
Confidence 8755
No 134
>KOG1148 consensus Glutaminyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=83.41 E-value=1.7 Score=47.11 Aligned_cols=60 Identities=20% Similarity=0.186 Sum_probs=48.2
Q ss_pred CceEEEEeeCCCCCCCCcccchhhhh----------------------------HHHHHHHHHHHCCCeEEEeeccCccc
Q 010356 84 VKKAVVDFSSPNIAKEMHVGHLRSTI----------------------------IGDSLARMLEFSNVEVLRRNHVGDWG 135 (512)
Q Consensus 84 ~~~v~Ve~~spNp~~~lHvGH~R~~i----------------------------iGD~lar~l~~~G~~V~~~~~i~D~G 135 (512)
|++| +.---|-|||.|||||+...- ..++|.++.+++||+-.++.|.-|.-
T Consensus 246 GGkV-~TRFPPEPNG~LHIGHaKAInvNFgyAk~~~G~cyLRfDDTNPEkEee~yf~sI~e~V~WLG~~P~kvTysSDyF 324 (764)
T KOG1148|consen 246 GGKV-VTRFPPEPNGILHIGHAKAINVNFGYAKAHGGVCYLRFDDTNPEKEEEEYFESIKEMVAWLGFEPYKVTYSSDYF 324 (764)
T ss_pred CCee-EEeCCCCCCceeeecchhheeechhhhhhhCCeEEEecCCCCcchhhHHHHHHHHHHHHHhCCCceeeecchhHH
Confidence 4555 456689999999999986332 46789999999999999999999998
Q ss_pred hHHHHHHHH
Q 010356 136 TQFGMLIEY 144 (512)
Q Consensus 136 ~qi~~l~~~ 144 (512)
-|+-.++..
T Consensus 325 dqLy~~av~ 333 (764)
T KOG1148|consen 325 DQLYELAVE 333 (764)
T ss_pred HHHHHHHHH
Confidence 777666543
No 135
>PLN02886 aminoacyl-tRNA ligase
Probab=78.12 E-value=2.8 Score=43.92 Aligned_cols=38 Identities=18% Similarity=0.251 Sum_probs=26.5
Q ss_pred eeCCCCCCCCcccchhhhhHHHHHHHHHHHCCCeEEEeeccCcc
Q 010356 91 FSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDW 134 (512)
Q Consensus 91 ~~spNp~~~lHvGH~R~~iiGD~lar~l~~~G~~V~~~~~i~D~ 134 (512)
|++--|+|.+|+||.-.++ .-...+.+ |+++. +.|-||
T Consensus 50 ~sGiqPSG~lHLGnylGai--~~~v~lQ~--~~~~~--~~IADl 87 (389)
T PLN02886 50 VSGVQPTGSIHLGNYLGAI--KNWVALQE--TYDTF--FCVVDL 87 (389)
T ss_pred EEEECCCCccHHHHHHHHH--HHHHHHhc--cCCEE--EEEecH
Confidence 8999999999999966555 33333333 88764 556664
No 136
>PRK14908 glycyl-tRNA synthetase; Provisional
Probab=77.05 E-value=13 Score=43.48 Aligned_cols=77 Identities=18% Similarity=0.109 Sum_probs=59.4
Q ss_pred hHHHHHHHHHHHHHHHhhcCChhhhhhcCCCCCCCHHHHHHHHHHHhhHHHHHHHHHhcChHHHHHHHHHHHHHHhcchh
Q 010356 428 AVYLLYAHARICSIIRKSGKDIEELKKTGSLVLDHADERALGLHLLHFSEVIEEALTNLLPNVVCEYLYNLSEYFTRFYS 507 (512)
Q Consensus 428 g~ylqY~~aR~~sil~k~~~~~~~~~~~~~~~l~~~~e~~L~~~l~~~~~~v~~a~~~~~p~~l~~yl~~La~~fn~fY~ 507 (512)
..-+.-++.|+..|++|.... . .+...+.+++|++|...+......+..+ .-+...+...|.+|....+.||+
T Consensus 893 ~~~l~~a~kRv~NIl~k~~~~--~---vd~~Lf~~~~E~~L~~a~~~~~~~~~~~--~~dy~~al~~La~L~~~Id~FFD 965 (1000)
T PRK14908 893 FAEIAAALNRLKRILASLSFS--V---TDASLLLEPAELNLKQALDAFREELTEL--PIDLKDYVAAAAELPQAVNTFFD 965 (1000)
T ss_pred HHHHHHHHHHHHHHHhhcCCC--c---cChhhcCCHHHHHHHHHHHHHHHHHHHh--hhhHHHHHHHHHhhhhHHHHHhC
Confidence 445777999999999997521 1 1234567899999999998886666655 34777888999999999999999
Q ss_pred cccC
Q 010356 508 NCQV 511 (512)
Q Consensus 508 ~~~v 511 (512)
+.-|
T Consensus 966 ~VmV 969 (1000)
T PRK14908 966 EVLV 969 (1000)
T ss_pred CCEe
Confidence 8655
No 137
>COG0751 GlyS Glycyl-tRNA synthetase, beta subunit [Translation, ribosomal structure and biogenesis]
Probab=75.68 E-value=16 Score=40.93 Aligned_cols=82 Identities=23% Similarity=0.243 Sum_probs=65.6
Q ss_pred hHHHHHHHHHHHHHHHhhcCChhhhhhcCCCCCCCHHHHHHHHHHHhhHHHHHHHHHhcChHHHHHHHHHHHHHHhcchh
Q 010356 428 AVYLLYAHARICSIIRKSGKDIEELKKTGSLVLDHADERALGLHLLHFSEVIEEALTNLLPNVVCEYLYNLSEYFTRFYS 507 (512)
Q Consensus 428 g~ylqY~~aR~~sil~k~~~~~~~~~~~~~~~l~~~~e~~L~~~l~~~~~~v~~a~~~~~p~~l~~yl~~La~~fn~fY~ 507 (512)
+--+--++.|+..|+.|...... ...+...+.++.|+.|...+..+...+..+...-+...+...|.+|..-...||+
T Consensus 577 ~~~l~~a~kRv~nIl~k~~~~~~--~~v~~~Lf~~~~E~~L~~a~~~~~~~~~~a~a~~~y~~al~~L~~L~~pId~FFd 654 (691)
T COG0751 577 AKALAAANKRVSNILAKAEKKLS--GTVDPSLFEEDAEKALFEALQALKPKVAEALAEKDYQDALAALAELRPPIDEFFD 654 (691)
T ss_pred hHHHHHHHHHHHHHHHhcccccC--CccChHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhHHHHhc
Confidence 33444789999999998763211 1122345678999999999999999999999999999999999999999999999
Q ss_pred cccC
Q 010356 508 NCQV 511 (512)
Q Consensus 508 ~~~v 511 (512)
+.-|
T Consensus 655 ~VmV 658 (691)
T COG0751 655 NVMV 658 (691)
T ss_pred Ccee
Confidence 8654
No 138
>cd07962 Anticodon_Ia_Val Anticodon-binding domain of valyl tRNA synthetases. This domain is found in valyl tRNA synthetases (ValRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. ValRS catalyzes the transfer of valine to the 3'-end of its tRNA.
Probab=71.80 E-value=9.7 Score=33.30 Aligned_cols=48 Identities=19% Similarity=0.139 Sum_probs=42.4
Q ss_pred CHHHHHHHHHHHhhHHHHHHHHHhcChHHHHHHHHHHHH--HHhcchhcc
Q 010356 462 HADERALGLHLLHFSEVIEEALTNLLPNVVCEYLYNLSE--YFTRFYSNC 509 (512)
Q Consensus 462 ~~~e~~L~~~l~~~~~~v~~a~~~~~p~~l~~yl~~La~--~fn~fY~~~ 509 (512)
++.+..++..+...++.+.+++++++.+.+++.+++++. ..|.|.+.+
T Consensus 41 ~~~d~~l~~~~~~~~~~~~~~~e~~~~~~al~~i~~~~~~~~~N~Yi~~~ 90 (135)
T cd07962 41 SLADRWILSRLNKTVEEVTEALENYRFSEAATALYEFFWNDFCDWYLELV 90 (135)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhHHHHHHh
Confidence 355678999999999999999999999999999999986 789888764
No 139
>cd00805 TyrRS_core catalytic core domain of tyrosinyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS) catalytic core domain. TyrRS is a homodimer which attaches Tyr to the appropriate tRNA. TyrRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formationof the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=71.59 E-value=3.4 Score=41.13 Aligned_cols=38 Identities=24% Similarity=0.372 Sum_probs=28.3
Q ss_pred eeCCCCCC-CCcccchhhhhHHHHHHHHHHHCCCeEEEeeccCcc
Q 010356 91 FSSPNIAK-EMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDW 134 (512)
Q Consensus 91 ~~spNp~~-~lHvGH~R~~iiGD~lar~l~~~G~~V~~~~~i~D~ 134 (512)
|++--||| .+|+||+-.+ ..+.++.+ +|++|+. .|+|+
T Consensus 4 y~G~~PTg~~lHLG~~~~~---~~~~~lq~-~g~~~~i--lI~D~ 42 (269)
T cd00805 4 YIGFDPTAPSLHLGHLVPL---MKLRDFQQ-AGHEVIV--LIGDA 42 (269)
T ss_pred EEeeCCCCCcccHHHHHHH---HHHHHHHH-CCCeEEE--EECCC
Confidence 78899999 8999997643 35666666 5998754 66775
No 140
>PF00579 tRNA-synt_1b: tRNA synthetases class I (W and Y); InterPro: IPR002305 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2JAN_A 3P0J_B 3P0I_B 3P0H_B 1YID_C 2A4M_C 1YIA_C 1YI8_C 2EL7_A 3PRH_A ....
Probab=71.54 E-value=3.3 Score=41.67 Aligned_cols=43 Identities=21% Similarity=0.360 Sum_probs=29.4
Q ss_pred ceEEEEeeCCCCCCCCcccchhhhhHHHHHHHHHHHCCCeEEEeeccCcc
Q 010356 85 KKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDW 134 (512)
Q Consensus 85 ~~v~Ve~~spNp~~~lHvGH~R~~iiGD~lar~l~~~G~~V~~~~~i~D~ 134 (512)
++..| |++--|+|++|+||+-.. ..+.++.+ .|++|.. -|+|+
T Consensus 4 ~~~~~-y~G~~PTg~lHlG~l~~~---~~~~~lq~-~g~~~~i--~iaD~ 46 (292)
T PF00579_consen 4 KPFRV-YTGIDPTGDLHLGHLVPI---MKLIWLQK-AGFKVII--LIADL 46 (292)
T ss_dssp SSEEE-EEEEESSSS-BHHHHHHH---HHHHHHHH-TTSEEEE--EEEHH
T ss_pred CCcEE-EEeECCCCcccchHHHHH---HHHHHHHh-cCCccce--Eecch
Confidence 44555 899999999999986544 33444444 8998877 45664
No 141
>cd07960 Anticodon_Ia_Ile_BEm Anticodon-binding domain of bacterial and eukaryotic mitochondrial isoleucyl tRNA synthetases. This domain is found in isoleucyl tRNA synthetases (IleRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. This family includes bacterial and eukaryotic mitochondrial members. IleRS catalyzes the transfer of isoleucine to the 3'-end of its tRNA.
Probab=56.54 E-value=28 Score=32.02 Aligned_cols=47 Identities=17% Similarity=0.070 Sum_probs=39.9
Q ss_pred CHHHHHHHHHHHhhHHHHHHHHHhcChHHHHHHHHHHHH-HH-hcchhc
Q 010356 462 HADERALGLHLLHFSEVIEEALTNLLPNVVCEYLYNLSE-YF-TRFYSN 508 (512)
Q Consensus 462 ~~~e~~L~~~l~~~~~~v~~a~~~~~p~~l~~yl~~La~-~f-n~fY~~ 508 (512)
...++.++..+..+...+.+++++++++.++..+++++. .+ |.|++.
T Consensus 43 ~~~D~~il~~l~~~i~~~~~~~e~~~f~~a~~~i~~f~~~~l~n~Yi~~ 91 (180)
T cd07960 43 LELDRYALHRLNELIKEVREAYENYEFHKVYQALNNFCTVDLSAFYLDI 91 (180)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456678999999999999999999999999999999985 35 666554
No 142
>cd07961 Anticodon_Ia_Ile_ABEc Anticodon-binding domain of archaeal, bacterial, and eukaryotic cytoplasmic isoleucyl tRNA synthetases. This domain is found in isoleucyl tRNA synthetases (IleRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. This family includes bacterial, archaeal, and eukaryotic cytoplasmic members. IleRS catalyzes the transfer of isoleucine to the 3'-end of its tRNA.
Probab=53.40 E-value=31 Score=31.87 Aligned_cols=45 Identities=13% Similarity=0.144 Sum_probs=40.5
Q ss_pred CHHHHHHHHHHHhhHHHHHHHHHhcChHHHHHHHHHHHHHHhcch
Q 010356 462 HADERALGLHLLHFSEVIEEALTNLLPNVVCEYLYNLSEYFTRFY 506 (512)
Q Consensus 462 ~~~e~~L~~~l~~~~~~v~~a~~~~~p~~l~~yl~~La~~fn~fY 506 (512)
+..++.++..+.+....+.+++++++++.++..++++...+.++|
T Consensus 46 ~~~D~wil~~l~~~i~~~~~~~e~~~f~~a~~~l~~f~~~~~~~Y 90 (183)
T cd07961 46 NVLDRWILSRLNSLIKEVTEEMEAYDLYTAVRALLEFIDELTNWY 90 (183)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhH
Confidence 466788999999999999999999999999999999998776766
No 143
>PRK12284 tryptophanyl-tRNA synthetase; Reviewed
Probab=52.03 E-value=15 Score=38.96 Aligned_cols=40 Identities=15% Similarity=0.214 Sum_probs=26.5
Q ss_pred eeCCCCCCCCcccchhhhhHHHHHHHHHHHCCCeEEEeeccCcc
Q 010356 91 FSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDW 134 (512)
Q Consensus 91 ~~spNp~~~lHvGH~R~~iiGD~lar~l~~~G~~V~~~~~i~D~ 134 (512)
|++--|+|.+|+||.-+++- . ..++....||++.+ .|-||
T Consensus 6 lSGiqPTG~lHLGNylGaik-~-~v~lq~q~~~~~~~--~IADl 45 (431)
T PRK12284 6 LTGITTTGTPHLGNYAGAIR-P-AIAASRQPGVESFY--FLADY 45 (431)
T ss_pred EEEecCCCcchHHHHHHHHH-H-HHHHHHhCCCcEEE--Eeech
Confidence 89999999999999544432 1 23344456888644 46664
No 144
>PLN02886 aminoacyl-tRNA ligase
Probab=45.99 E-value=14 Score=38.81 Aligned_cols=28 Identities=18% Similarity=0.247 Sum_probs=22.2
Q ss_pred cCCceEEEEeeCcccchHHHHHHHHHHcCC
Q 010356 293 EKAEWIIYVTDVGQQLHFDMVFSAAKRAGW 322 (512)
Q Consensus 293 ~~~d~~iyV~g~~q~~hf~~l~~~~~~~g~ 322 (512)
+++|.+ -+|.||..|+.....++..++.
T Consensus 183 ~~a~~V--PVG~DQ~qH~eLtRdiA~rfN~ 210 (389)
T PLN02886 183 YQADLV--PVGEDQKQHLELTRDIAERVNN 210 (389)
T ss_pred cCCCeE--EEccchHHHHHHHHHHHHHHhh
Confidence 456655 4899999999988888887764
No 145
>COG1656 Uncharacterized conserved protein [Function unknown]
Probab=45.60 E-value=15 Score=33.47 Aligned_cols=21 Identities=24% Similarity=0.344 Sum_probs=17.8
Q ss_pred HHHHHHHHCCCeEEEeeccCc
Q 010356 113 SLARMLEFSNVEVLRRNHVGD 133 (512)
Q Consensus 113 ~lar~l~~~G~~V~~~~~i~D 133 (512)
-|||+||.+||++.+.+...|
T Consensus 17 ~LARwLRllGydt~~~~~~~d 37 (165)
T COG1656 17 KLARWLRLLGYDTVYSSNESD 37 (165)
T ss_pred HHHHHHHHcCCceeeeccCCc
Confidence 489999999999999875444
No 146
>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.
Probab=45.10 E-value=3e+02 Score=28.77 Aligned_cols=104 Identities=16% Similarity=0.079 Sum_probs=60.5
Q ss_pred eCHHHHHHHHHHHHHcCCCCCCCcCCCceEEEEeeCCCCCCCCcccchhhhhHHHHHHHHHHHCCCeEEEeeccCccchH
Q 010356 58 LSKNWMAKNIQKMLVDGIETWAPKLRVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQ 137 (512)
Q Consensus 58 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~Ve~~spNp~~~lHvGH~R~~iiGD~lar~l~~~G~~V~~~~~i~D~G~q 137 (512)
-......+++.++-+..........-.++|+|--+| ..+-.-+.++.-.|=++|.++|.+|++|... .+|.
T Consensus 193 ERg~Ev~e~l~ef~~l~~~~~~~~~m~rtvlV~nts----~~p~~~R~~s~yta~tiAEYfrd~G~dVll~--~Ds~--- 263 (369)
T cd01134 193 ERGNEMTEVLEEFPELTDPVTGEPLMKRTVLIANTS----NMPVAAREASIYTGITIAEYFRDMGYNVALM--ADST--- 263 (369)
T ss_pred CChHHHHHHHHHHHhhccccccCCccceEEEEEECC----CCCHHHHHHHHHHHHHHHHHHHHcCCCEEEE--EcCh---
Confidence 444566666655432221111111235778886666 3445567788888999999999999999997 4552
Q ss_pred HHHHHHHHH------hhCCCCCccCcccHHHHHHHHHHHh
Q 010356 138 FGMLIEYLF------EKFPNSEDANETAIGELQEFYRRSK 171 (512)
Q Consensus 138 i~~l~~~~~------~~~~~~~~~~~~~i~~l~~~y~~~~ 171 (512)
-..+..+. .+.|..+.++..-..+|.++|.++.
T Consensus 264 -tR~A~A~REIs~~l~E~P~~~GYP~yl~s~La~~yERAG 302 (369)
T cd01134 264 -SRWAEALREISGRLEEMPGEEGYPAYLGARLASFYERAG 302 (369)
T ss_pred -hHHHHHHHHHHHhcCCCCCccCcCccHHHHHHHHHHhcc
Confidence 22222221 2334444455544556777777765
No 147
>PRK12282 tryptophanyl-tRNA synthetase II; Reviewed
Probab=41.97 E-value=24 Score=36.32 Aligned_cols=38 Identities=13% Similarity=0.160 Sum_probs=26.0
Q ss_pred eeCCCCCCCCcccchhhhhHHHHHHHHHHHCCCeEEEeeccCcc
Q 010356 91 FSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDW 134 (512)
Q Consensus 91 ~~spNp~~~lHvGH~R~~iiGD~lar~l~~~G~~V~~~~~i~D~ 134 (512)
|++--|+|++|+||.-.++. -.+.|+..|. | ...|.||
T Consensus 6 ~sG~~PTG~~HLGn~l~~~~---~~~~lQ~~~~-~--~i~IaD~ 43 (333)
T PRK12282 6 LTGDRPTGKLHLGHYVGSLK---NRVALQNEHE-Q--FVLIADQ 43 (333)
T ss_pred EEeeCCCCcchHHHHHHHHH---HHHHHHhCCC-E--EEEEccc
Confidence 88999999999999544332 2335666675 5 4567776
No 148
>PF01927 Mut7-C: Mut7-C RNAse domain; InterPro: IPR002782 This prokaryotic family of proteins have no known function. The proteins contain four conserved cysteines that may be involved in metal binding or disulphide bridges.
Probab=40.70 E-value=21 Score=32.01 Aligned_cols=21 Identities=29% Similarity=0.426 Sum_probs=17.9
Q ss_pred HHHHHHHHCCCeEEEeeccCc
Q 010356 113 SLARMLEFSNVEVLRRNHVGD 133 (512)
Q Consensus 113 ~lar~l~~~G~~V~~~~~i~D 133 (512)
-|||.||.+||||.....+.|
T Consensus 11 ~Lar~LR~lG~Dt~~~~~~~D 31 (147)
T PF01927_consen 11 RLARWLRLLGYDTLYSRDIDD 31 (147)
T ss_pred HHHHHHHHCCCcEEEeCCCCh
Confidence 489999999999998776655
No 149
>PRK00927 tryptophanyl-tRNA synthetase; Reviewed
Probab=39.14 E-value=24 Score=36.29 Aligned_cols=39 Identities=15% Similarity=0.295 Sum_probs=26.1
Q ss_pred eeCCCCCCCCcccchhhhhHHHHHHHHHHHCCCeEEEeeccCccc
Q 010356 91 FSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWG 135 (512)
Q Consensus 91 ~~spNp~~~lHvGH~R~~iiGD~lar~l~~~G~~V~~~~~i~D~G 135 (512)
|++--|+|++|+||.-.++ --+.++-+ +++|. ..|.||=
T Consensus 5 ~~G~~PTG~lHLG~~~g~~--~~~~~lQ~--~~~~~--~~IaD~h 43 (333)
T PRK00927 5 LSGIQPTGKLHLGNYLGAI--KNWVELQD--EYECF--FCIADLH 43 (333)
T ss_pred EEeeCCCccchHHhHHHHH--HHHHHHHh--cCCeE--EEEecHH
Confidence 7889999999999976554 22334433 36654 4578863
No 150
>PF08373 RAP: RAP domain; InterPro: IPR013584 The ~60-residue RAP (an acronym for RNA-binding domain abundant in Apicomplexans) domain is found in various proteins in eukaryotes. It is particularly abundant in apicomplexans and might mediate a range of cellular functions through its potential interactions with RNA []. The RAP domain consists of multiple blocks of charged and aromatics residues and is predicted to be composed of alpha helical and beta strand structures. Two predicted loop regions that are dominated by glycine and tryptophan residues are found before and after the central beta sheet []. Some proteins known to contain a RAP domain are listed below: Human hypothetical protein MGC5297, Mammalian FAST kinase domain-containing proteins (FASTKDs), Chlamydomonas reinhardtii chloroplastic trans-splicing factor Raa3.
Probab=39.13 E-value=24 Score=25.87 Aligned_cols=21 Identities=19% Similarity=0.157 Sum_probs=16.8
Q ss_pred HHHH--HHHHHHCCCeEEEeecc
Q 010356 111 GDSL--ARMLEFSNVEVLRRNHV 131 (512)
Q Consensus 111 GD~l--ar~l~~~G~~V~~~~~i 131 (512)
|-+. .|+|+.+||+|+.+.|.
T Consensus 18 g~t~lk~r~L~~~G~~Vi~Ip~~ 40 (58)
T PF08373_consen 18 GSTKLKHRHLKALGYKVISIPYY 40 (58)
T ss_pred hHHHHHHHHHHHCCCEEEEecHH
Confidence 5444 57899999999999874
No 151
>KOG2623 consensus Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=35.46 E-value=70 Score=33.43 Aligned_cols=57 Identities=12% Similarity=0.022 Sum_probs=37.4
Q ss_pred eEEEEeeCcccchHHHHHHHHHHc-CCCCCCCCCCCceEEEEeEEEECCCCcceeeecCCeecHH
Q 010356 297 WIIYVTDVGQQLHFDMVFSAAKRA-GWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLV 360 (512)
Q Consensus 297 ~~iyV~g~~q~~hf~~l~~~~~~~-g~~~~~~~~~~~~~Hv~~g~V~~~~g~kmSkR~G~~v~l~ 360 (512)
.-+-+-|.||-++...-......+ +.. ....-+.+-+++..+|.|+-||.||.|+++
T Consensus 228 ~~~QlGGsDQwGNitaG~dlI~ki~~~~-------~~vfGlT~PLlTsstG~KlGKSaGnAvWLd 285 (467)
T KOG2623|consen 228 CRFQLGGSDQWGNITAGTDLIRKIMPIQ-------AFVFGLTFPLLTSSTGAKLGKSAGNAVWLD 285 (467)
T ss_pred eeEEecccccccccchHHHHHHHhcccc-------cceeeeeeeeEecCcchhhccCCCceEEec
Confidence 445678999988777544444332 210 111223456788889999999999999875
No 152
>COG1832 Predicted CoA-binding protein [General function prediction only]
Probab=33.60 E-value=60 Score=28.88 Aligned_cols=36 Identities=19% Similarity=0.118 Sum_probs=30.6
Q ss_pred CceEEEEeeCCCCCCCCcccchhhhhHHHHHHHHHHHCCCeEEEeec
Q 010356 84 VKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNH 130 (512)
Q Consensus 84 ~~~v~Ve~~spNp~~~lHvGH~R~~iiGD~lar~l~~~G~~V~~~~~ 130 (512)
.++|-|==.||||.+|.| -++.+|...||+|+-+|=
T Consensus 16 ~K~IAvVG~S~~P~r~sy-----------~V~kyL~~~GY~ViPVNP 51 (140)
T COG1832 16 AKTIAVVGASDKPDRPSY-----------RVAKYLQQKGYRVIPVNP 51 (140)
T ss_pred CceEEEEecCCCCCccHH-----------HHHHHHHHCCCEEEeeCc
Confidence 456777789999999976 478999999999999883
No 153
>TIGR02855 spore_yabG sporulation peptidase YabG. Members of this family are the protein YabG, demonstrated for Bacillus subtilis to be an endopeptidase able to release N-terminal peptides from a number of sporulation proteins, including CotT, CotF, and SpoIVA. It appears to be expressed under control of sigma-K.
Probab=32.45 E-value=2.6e+02 Score=27.92 Aligned_cols=63 Identities=22% Similarity=0.292 Sum_probs=34.0
Q ss_pred CCceEEEEeeCcccchHHHHHHHHHHcCCCCCCCCCCCceEEEEeEEEECCCCccee-eecCCeecHHHHHHH
Q 010356 294 KAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLR-TRFSEVVRLVDLLDE 365 (512)
Q Consensus 294 ~~d~~iyV~g~~q~~hf~~l~~~~~~~g~~~~~~~~~~~~~Hv~~g~V~~~~g~kmS-kR~G~~v~l~dll~~ 365 (512)
+.|..+-+-|+=| +||..+.++ .+++.+ ......+|. +--|.- -.|.| |+-.++|++.|+++.
T Consensus 197 ~~D~LVIFAGACQ-S~yEall~A--GANFAS---SP~RVlIHa-lDPV~i--~eKia~T~i~~~V~i~dvi~n 260 (283)
T TIGR02855 197 SLDQLVIFAGACQ-SHFESLIRA--GANFAS---SPSRVNIHA-LDPVYI--VEKISFTPFMERVNIWEVLRN 260 (283)
T ss_pred CcccEEEEcchhH-HHHHHHHHc--CccccC---CccceEEec-cCccee--EEeeeeccccceecHHHHHhh
Confidence 5566663445544 566666443 223432 122345663 332221 12454 788889999999886
No 154
>PF15540 Toxin_62: Putative toxin 62
Probab=32.40 E-value=40 Score=28.30 Aligned_cols=16 Identities=25% Similarity=0.320 Sum_probs=13.0
Q ss_pred CcCCCceEEEEeeCCC
Q 010356 80 PKLRVKKAVVDFSSPN 95 (512)
Q Consensus 80 ~~~~~~~v~Ve~~spN 95 (512)
+...++.+.|||.+||
T Consensus 47 kd~~gks~pvE~~gpN 62 (113)
T PF15540_consen 47 KDKNGKSFPVEWRGPN 62 (113)
T ss_pred ccCCCccceEEEeCCC
Confidence 3345788999999999
No 155
>PRK12556 tryptophanyl-tRNA synthetase; Provisional
Probab=32.24 E-value=33 Score=35.27 Aligned_cols=40 Identities=13% Similarity=0.122 Sum_probs=24.7
Q ss_pred eeCCCCCCCCcccchhhhhHHHHHHHHHHHCCCeEEEeeccCcc
Q 010356 91 FSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDW 134 (512)
Q Consensus 91 ~~spNp~~~lHvGH~R~~iiGD~lar~l~~~G~~V~~~~~i~D~ 134 (512)
|++--|+|.+|+||.-+++-- ..++.+..|.++ .+.|-||
T Consensus 7 ~sGiqPTG~~HLGnylga~k~--~~~lq~~~~~~~--~~~IADl 46 (332)
T PRK12556 7 LTGIKPTGYPHLGNYIGAIKP--ALQMAKNYEGKA--LYFIADY 46 (332)
T ss_pred EEEECCCCcchHHHHHHHHHH--HHHHHHhcCCeE--EEEEech
Confidence 899999999999995443321 123334445444 4456664
No 156
>KOG2713 consensus Mitochondrial tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=30.48 E-value=18 Score=36.09 Aligned_cols=56 Identities=11% Similarity=0.030 Sum_probs=0.0
Q ss_pred cCCceEEEEeeCcccchHHHHHHHHHHcCCCCCCCCCCCceEEEEeEEEEC---------CCCcceeeecCC
Q 010356 293 EKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLG---------EDGKRLRTRFSE 355 (512)
Q Consensus 293 ~~~d~~iyV~g~~q~~hf~~l~~~~~~~g~~~~~~~~~~~~~Hv~~g~V~~---------~~g~kmSkR~G~ 355 (512)
|+.+|+= +|.||..|..-...++++++. .....+.-++--++.. ...+|||||.+|
T Consensus 154 YksThVP--VGeDQsQHleL~r~lA~~fN~-----~Y~~~~fpvP~~il~~~~~rV~SL~dpekKMSKSd~n 218 (347)
T KOG2713|consen 154 YKSTHVP--VGEDQSQHLELARHLAQAFNK-----TYGTEIFPVPEQILRQSHARVMSLRDPEKKMSKSDPN 218 (347)
T ss_pred hcccccc--CCccHHHHHHHHHHHHHHHhh-----hccCeeecCcHHHHhhhhhhhhhccChhhhcccCCCC
No 157
>PF03464 eRF1_2: eRF1 domain 2; InterPro: IPR005141 This domain is found in the release factor eRF1 which terminates protein biosynthesis by recognizing stop codons at the A site of the ribosome and stimulating peptidyl-tRNA bond hydrolysis at the peptidyl transferase centre. The crystal structure of human eRF1 is known []. The overall shape and dimensions of eRF1 resemble a tRNA molecule with domains 1, 2, and 3 of eRF1 corresponding to the anticodon loop, aminoacyl acceptor stem, and T stem of a tRNA molecule, respectively. The position of the essential GGQ motif at an exposed tip of domain 2 suggests that the Gln residue coordinates a water molecule to mediate the hydrolytic activity at the peptidyl transferase centre. A conserved groove on domain 1, 80 A from the GGQ motif, is proposed to form the codon recognition site []. This domain is also found in other proteins which may also be involved in translation termination ; PDB: 3AGK_A 2VGN_A 2VGM_A 3J16_A 3IZQ 3IR9_A 3OBW_A 3MCA_B 2QI2_A 3E1Y_D ....
Probab=29.65 E-value=1.5e+02 Score=25.79 Aligned_cols=28 Identities=25% Similarity=0.506 Sum_probs=19.8
Q ss_pred HHHHHHHHHhCC-CCCCceeeEeccCCeE
Q 010356 27 QPVGQAIMKNLP-PSEMIESCSVAGPGFV 54 (512)
Q Consensus 27 ~~iA~~i~~~l~-~~~~i~~v~~~g~Gfi 54 (512)
.+|++.|.+.+- ..+-+..+-++||||.
T Consensus 57 ~~i~~~l~~~f~~~~~~~~~iIiaGPGf~ 85 (133)
T PF03464_consen 57 KEIAEALKKYFLVNFDDVKCIIIAGPGFT 85 (133)
T ss_dssp HHHHHHHHHHCCCHTTTCSEEEEEESTTH
T ss_pred HHHHHHHHHHhhhccccccEEEEECCHHH
Confidence 468888887732 2245688999999963
No 158
>cd02156 nt_trans nucleotidyl transferase superfamily. nt_trans (nucleotidyl transferase) This superfamily includes the class I amino-acyl tRNA synthetases, pantothenate synthetase (PanC), ATP sulfurylase, and the cytidylyltransferases, all of which have a conserved dinucleotide-binding domain.
Probab=29.58 E-value=24 Score=29.41 Aligned_cols=14 Identities=21% Similarity=0.394 Sum_probs=11.1
Q ss_pred eCCCCCCCCcccchh
Q 010356 92 SSPNIAKEMHVGHLR 106 (512)
Q Consensus 92 ~spNp~~~lHvGH~R 106 (512)
.+.++ +|+|.||..
T Consensus 4 ~~G~F-dp~H~GH~~ 17 (105)
T cd02156 4 FPGEP-GYLHIGHAK 17 (105)
T ss_pred eCCCC-CCCCHHHHH
Confidence 35566 999999987
No 159
>PRK04192 V-type ATP synthase subunit A; Provisional
Probab=27.85 E-value=5.2e+02 Score=28.82 Aligned_cols=81 Identities=17% Similarity=0.233 Sum_probs=50.3
Q ss_pred CceEEEEeeCCCCCCCCcccchhhhhHHHHHHHHHHHCCCeEEEeeccCccchHHHHHHHHH---HhhCCCCCccCcccH
Q 010356 84 VKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYL---FEKFPNSEDANETAI 160 (512)
Q Consensus 84 ~~~v~Ve~~spNp~~~lHvGH~R~~iiGD~lar~l~~~G~~V~~~~~i~D~G~qi~~l~~~~---~~~~~~~~~~~~~~i 160 (512)
.++|+|--+| ..+-.-..++.-.|=++|.++|.+||+|.-.. ++ =+.++.-.+-+ ..+.|..+.++..--
T Consensus 289 ~RTvlVanTS----n~Pv~aR~~s~ytgiTiAEYfRd~G~~Vllm~--DS-tSR~AeAlREIS~~l~E~P~~eGYP~yL~ 361 (586)
T PRK04192 289 ERTVLIANTS----NMPVAAREASIYTGITIAEYYRDMGYDVLLMA--DS-TSRWAEALREISGRLEEMPGEEGYPAYLA 361 (586)
T ss_pred eeEEEEEECC----CCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEe--cC-hHHHHHHHHHHHHhcCCCCccCCcCccHH
Confidence 5778886665 44455667788889999999999999999843 33 12222211111 123344444555555
Q ss_pred HHHHHHHHHHh
Q 010356 161 GELQEFYRRSK 171 (512)
Q Consensus 161 ~~l~~~y~~~~ 171 (512)
.+|+.+|.+|.
T Consensus 362 S~La~~yERAG 372 (586)
T PRK04192 362 SRLAEFYERAG 372 (586)
T ss_pred HHHHHHHHhhc
Confidence 55677777665
No 160
>PRK09620 hypothetical protein; Provisional
Probab=26.64 E-value=1.2e+02 Score=29.37 Aligned_cols=45 Identities=20% Similarity=0.141 Sum_probs=34.2
Q ss_pred CCceEEEEeeCCCCCCCC-----cccchhhhhHHHHHHHHHHHCCCeEEEeec
Q 010356 83 RVKKAVVDFSSPNIAKEM-----HVGHLRSTIIGDSLARMLEFSNVEVLRRNH 130 (512)
Q Consensus 83 ~~~~v~Ve~~spNp~~~l-----HvGH~R~~iiGD~lar~l~~~G~~V~~~~~ 130 (512)
.+++|+| -++|+ -.. .|.+.-|.-+|-.||+.|..+|++|+.+..
T Consensus 2 ~gk~vlI-TaG~T--~E~iD~VR~itN~SSGfiGs~LA~~L~~~Ga~V~li~g 51 (229)
T PRK09620 2 KGKKVLI-TSGGC--LEKWDQVRGHTNMAKGTIGRIIAEELISKGAHVIYLHG 51 (229)
T ss_pred CCCEEEE-eCCCc--cCCcCCeeEecCCCcCHHHHHHHHHHHHCCCeEEEEeC
Confidence 3667777 44543 222 677878899999999999999999998753
No 161
>COG0180 TrpS Tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=26.34 E-value=35 Score=34.73 Aligned_cols=37 Identities=19% Similarity=0.261 Sum_probs=25.4
Q ss_pred eeCCCCCCCCcccchhhhhHHHHHHHHHHHCCC-eEEEeeccCc
Q 010356 91 FSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNV-EVLRRNHVGD 133 (512)
Q Consensus 91 ~~spNp~~~lHvGH~R~~iiGD~lar~l~~~G~-~V~~~~~i~D 133 (512)
+|+--|+|.+|+||.- |-.-.++....++ ++. +.|-|
T Consensus 9 lSG~~PSG~lHLGny~----ga~~~~v~~q~~~~~~f--~~IaD 46 (314)
T COG0180 9 LSGIQPSGKLHLGNYL----GAIRNWVLLQEEYYECF--FFIAD 46 (314)
T ss_pred EecCCCCCCcchhHhH----HHHHHHHHHhcccCceE--EEEec
Confidence 8999999999999964 4344555555664 444 35555
No 162
>PF10079 DUF2317: Uncharacterized protein conserved in bacteria (DUF2317); InterPro: IPR011199 Members of this protein family include BshC, which is an enzyme required for bacillithiol biosynthesis and described as a cysteine-adding enzyme. Bacillithiol is a low-molecular-weight thiol, an analog of glutathione and mycothiol, and is found largely in the Firmicutes.
Probab=26.23 E-value=9.2e+02 Score=26.67 Aligned_cols=27 Identities=15% Similarity=0.138 Sum_probs=23.5
Q ss_pred eEEEEeeCcccchHHHHHHHHHHcCCC
Q 010356 297 WIIYVTDVGQQLHFDMVFSAAKRAGWL 323 (512)
Q Consensus 297 ~~iyV~g~~q~~hf~~l~~~~~~~g~~ 323 (512)
.+-||-|.+-..|+.++..+.+.+|..
T Consensus 346 tlAyVgGPGEIaYwaqLk~~F~~~g~~ 372 (542)
T PF10079_consen 346 TLAYVGGPGEIAYWAQLKDVFEHFGIP 372 (542)
T ss_pred ceeEecCcHHHHHHHHHHHHHHHhCCC
Confidence 355899999999999999999999984
No 163
>PF09456 RcsC: RcsC Alpha-Beta-Loop (ABL); InterPro: IPR019017 This domain is found in the C terminus of the signal transduction response regulator (phospho-relay) kinase RcsC, between the ATP-binding region (IPR003594 from INTERPRO) and the receiver region (IPR001789 from INTERPRO). This domain forms a discrete alpha/beta/loop structure []. The Rcs signalling pathway controls a variety of physiological functions like capsule synthesis, cell division or motility in prokaryotes. The Rcs regulation cascade, involving a multi-step phosphorelay between the two membrane-bound hybrid sensor kinases RcsC and RcsD and the global regulator RcsB, is, up to now, one of the most complicated regulatory systems in bacteria []. ; GO: 0004673 protein histidine kinase activity, 0004871 signal transducer activity, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent, 0018106 peptidyl-histidine phosphorylation, 0005886 plasma membrane, 0016021 integral to membrane; PDB: 2AYY_A 2AYX_A.
Probab=24.49 E-value=56 Score=26.97 Aligned_cols=25 Identities=24% Similarity=0.495 Sum_probs=19.8
Q ss_pred hhhhhHHHHHHHHHHHCCCeEEEee
Q 010356 105 LRSTIIGDSLARMLEFSNVEVLRRN 129 (512)
Q Consensus 105 ~R~~iiGD~lar~l~~~G~~V~~~~ 129 (512)
.||+-+..+|-|+|++.|.+|.+-.
T Consensus 6 irNa~Le~yL~~lL~~~G~~v~~y~ 30 (92)
T PF09456_consen 6 IRNAYLESYLQRLLSYHGFQVQRYE 30 (92)
T ss_dssp ---HHHHHHHHHHHCTTTEEEEE-S
T ss_pred ehhHHHHHHHHHHHHHCCcEEEEec
Confidence 6999999999999999999998844
No 164
>KOG2144 consensus Tyrosyl-tRNA synthetase, cytoplasmic [Translation, ribosomal structure and biogenesis]
Probab=23.57 E-value=53 Score=32.93 Aligned_cols=54 Identities=26% Similarity=0.280 Sum_probs=37.2
Q ss_pred eeCcccchHHHHHHHHHHcCCCCCCCCCCCceEEEEeEEEECCC-CcceeeecCCeecHHHHHHH
Q 010356 302 TDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGED-GKRLRTRFSEVVRLVDLLDE 365 (512)
Q Consensus 302 ~g~~q~~hf~~l~~~~~~~g~~~~~~~~~~~~~Hv~~g~V~~~~-g~kmSkR~G~~v~l~dll~~ 365 (512)
-|.||.-.|.--.+.+-.+||. +-.|+.+.||-+-. |.|||+|.-+. -.||+|+
T Consensus 183 gGvDQRKIf~~A~eylp~l~yk--------KrihLmnpMvPGL~q~~KMSsSd~~S--kIdllD~ 237 (360)
T KOG2144|consen 183 GGVDQRKIFVLAEEYLPDLGYK--------KRIHLMNPMVPGLAQGEKMSSSDPLS--KIDLLDE 237 (360)
T ss_pred cCccHHHHHHHHHHhhhhhCcc--------cceeecCCCCccccccCccccCCccc--ccccccC
Confidence 5778877777666777788883 23677777775443 88999998653 4566665
No 165
>PF04028 DUF374: Domain of unknown function (DUF374); InterPro: IPR007172 This is a bacterial domain of unknown function.
Probab=22.06 E-value=82 Score=24.82 Aligned_cols=19 Identities=32% Similarity=0.503 Sum_probs=17.8
Q ss_pred HHHHHHHHHHCCCeEEEee
Q 010356 111 GDSLARMLEFSNVEVLRRN 129 (512)
Q Consensus 111 GD~lar~l~~~G~~V~~~~ 129 (512)
|+.++++++..|++++|-.
T Consensus 22 Ge~ia~~~~~~G~~~iRGS 40 (74)
T PF04028_consen 22 GELIARVLERFGFRTIRGS 40 (74)
T ss_pred HHHHHHHHHHcCCCeEEeC
Confidence 8999999999999999966
No 166
>PF07454 SpoIIP: Stage II sporulation protein P (SpoIIP); InterPro: IPR010897 This family contains the bacterial stage II sporulation protein P (SpoIIP) (approximately 350 residues long). It has been shown that a block in polar cytokinesis in Bacillus subtilis is mediated partly by transcription of spoIID, spoIIM and spoIIP. This inhibition of polar division is involved in the locking in of asymmetry after the formation of a polar septum during sporulation []. SpoIIP is one of the three genes (spoIID, spoIIM and spoIIP, [, , ]), under the control of sigma E, that have been shown to be essential for the engulfment of the forespore by the mother cell. Their products are involved in degradation of the septal peptidoglycan and mutations in spoIID, spoIIM or spoIIP block sporulation at morphological stage II, prior to the stage of engulfment. These three genes are absolutely conserved (sometimes even duplicated) in all endospore formers [].
Probab=22.03 E-value=2e+02 Score=28.60 Aligned_cols=52 Identities=15% Similarity=0.195 Sum_probs=34.2
Q ss_pred CCCceEEEEeeCC-----------CCCCCCcccchhh--hhHHHHHHHHHHHCCCeEEEeeccCc
Q 010356 82 LRVKKAVVDFSSP-----------NIAKEMHVGHLRS--TIIGDSLARMLEFSNVEVLRRNHVGD 133 (512)
Q Consensus 82 ~~~~~v~Ve~~sp-----------Np~~~lHvGH~R~--~iiGD~lar~l~~~G~~V~~~~~i~D 133 (512)
...+.|+|+|+=. .+.++-.--|... .-+|+.|++.|+..|+.|....-+.|
T Consensus 71 ~~~~~V~IYhTH~~EsY~p~~~~~~~~~~~~~~~~~~nV~~VG~~L~~~Le~~Gi~v~h~~t~~d 135 (268)
T PF07454_consen 71 SGKPQVLIYHTHSTESYLPSDGLKSVPGPGGATDEEVNVVKVGDRLAQELEKYGIGVIHDKTIHD 135 (268)
T ss_pred CCCCEEEEEeCCCccccccccccccCCCCCccccccchHHHHHHHHHHHHHHCCCcEEEeCCCCC
Confidence 4467899988722 1223322223332 33599999999999999999766555
No 167
>PF09840 DUF2067: Uncharacterized protein conserved in archaea (DUF2067); InterPro: IPR019202 This family of archaeal proteins, have no known function.
Probab=21.59 E-value=5.4e+02 Score=24.18 Aligned_cols=22 Identities=18% Similarity=0.132 Sum_probs=18.5
Q ss_pred hhhHHHHHHHHHHHCCCeEEEe
Q 010356 107 STIIGDSLARMLEFSNVEVLRR 128 (512)
Q Consensus 107 ~~iiGD~lar~l~~~G~~V~~~ 128 (512)
.++-=|+|+..|+.+||+|...
T Consensus 84 ~~vp~d~L~~~L~~~G~~ae~~ 105 (190)
T PF09840_consen 84 YPVPPDLLVDALKLLGYKAEYR 105 (190)
T ss_pred CCCCHHHHHHHHHhCCCeeEEe
Confidence 4556799999999999999874
No 168
>PF02525 Flavodoxin_2: Flavodoxin-like fold; InterPro: IPR003680 This family consists of a domain with a flavodoxin-like fold. The family includes bacterial and eukaryotic NAD(P)H dehydrogenase (quinone) 1.6.99.2 from EC. These enzymes catalyse the NAD(P)H-dependent two-electron reductions of quinones and protect cells against damage by free radicals and reactive oxygen species []. This enzyme uses a FAD cofactor. The equation for this reaction is NAD(P)H + acceptor = NAD(P)(+) + reduced acceptor. This enzyme is also involved in the bioactivation of prodrugs used in chemotherapy []. The family also includes acyl carrier protein phosphodiesterase 3.1.4.14 from EC. This enzyme converts holo-ACP to apo-ACP by hydrolytic cleavage of the phosphopantetheine residue from ACP []. This family is related to FMN_red IPR005025 from INTERPRO and Flavodoxin_1 IPR008254 from INTERPRO.; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0050662 coenzyme binding; PDB: 1T5B_B 1DXQ_B 2B3D_A 2Z9D_B 2Z9C_A 2Z98_A 2D5I_A 2Z9B_A 1TIK_A 1V4B_A ....
Probab=20.95 E-value=1.8e+02 Score=26.94 Aligned_cols=39 Identities=26% Similarity=0.169 Sum_probs=31.0
Q ss_pred ceEEEEeeCCCCCCCCcccchhhhhHHHHHHHHHHHCC-CeEEEee
Q 010356 85 KKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSN-VEVLRRN 129 (512)
Q Consensus 85 ~~v~Ve~~spNp~~~lHvGH~R~~iiGD~lar~l~~~G-~~V~~~~ 129 (512)
+||+|=++||++.+ ..|..+.+.+..-++..| ++|...+
T Consensus 1 mkiLvI~asp~~~~------S~s~~l~~~~~~~~~~~~~~~v~~~d 40 (199)
T PF02525_consen 1 MKILVINASPRPEG------SFSRALADAFLEGLQEAGPHEVEIRD 40 (199)
T ss_dssp EEEEEEE--SSTTT------SHHHHHHHHHHHHHHHHTTSEEEEEE
T ss_pred CEEEEEEcCCCCcc------CHHHHHHHHHHHHHHHcCCCEEEEEE
Confidence 47888899998765 567889999999999999 8888876
No 169
>COG2945 Predicted hydrolase of the alpha/beta superfamily [General function prediction only]
Probab=20.40 E-value=1.6e+02 Score=27.87 Aligned_cols=35 Identities=26% Similarity=0.402 Sum_probs=27.9
Q ss_pred CCCCcccchhhhhHHHHHHHHHHHCCCeEEEeeccC
Q 010356 97 AKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVG 132 (512)
Q Consensus 97 ~~~lHvGH~R~~iiGD~lar~l~~~G~~V~~~~~i~ 132 (512)
-.|+|=||.-|-++ -.++|.|+..|+-+.|-||=+
T Consensus 36 PHPl~gGtm~nkvv-~~la~~l~~~G~atlRfNfRg 70 (210)
T COG2945 36 PHPLFGGTMNNKVV-QTLARALVKRGFATLRFNFRG 70 (210)
T ss_pred CCccccCccCCHHH-HHHHHHHHhCCceEEeecccc
Confidence 36778888665554 578999999999999999844
Done!