Query 010356
Match_columns 512
No_of_seqs 261 out of 2139
Neff 7.8
Searched_HMMs 29240
Date Mon Mar 25 05:02:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010356.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010356hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1f7u_A Arginyl-tRNA synthetase 100.0 7E-106 2E-110 874.9 42.1 486 5-512 70-571 (607)
2 2zue_A Arginyl-tRNA synthetase 100.0 5E-103 2E-107 858.1 42.7 488 5-512 42-593 (629)
3 1iq0_A Arginyl-tRNA synthetase 100.0 1E-94 3.5E-99 790.1 43.0 470 5-512 37-556 (592)
4 3fnr_A Arginyl-tRNA synthetase 100.0 3E-86 1E-90 699.0 42.7 400 56-512 1-420 (464)
5 1li5_A Cysrs, cysteinyl-tRNA s 100.0 3.5E-42 1.2E-46 364.7 24.2 306 83-508 19-372 (461)
6 4dlp_A Aminoacyl-tRNA syntheta 100.0 5.2E-41 1.8E-45 363.8 29.0 329 84-510 24-451 (536)
7 3kfl_A Methionyl-tRNA syntheta 100.0 2.4E-41 8.1E-46 367.9 21.8 330 82-510 23-468 (564)
8 2csx_A Methionyl-tRNA syntheta 100.0 7.1E-39 2.4E-43 344.3 18.9 324 84-510 4-420 (497)
9 3tqo_A Cysteinyl-tRNA syntheta 100.0 4.1E-38 1.4E-42 330.5 22.7 307 83-506 22-372 (462)
10 2d5b_A Methionyl-tRNA syntheta 100.0 1.3E-38 4.3E-43 342.7 19.0 325 84-510 2-422 (500)
11 3h99_A Methionyl-tRNA syntheta 100.0 2.1E-37 7.3E-42 337.1 24.8 329 83-510 16-472 (560)
12 2x1l_A Methionyl-tRNA syntheta 100.0 3.6E-37 1.2E-41 333.1 23.7 330 83-510 10-440 (524)
13 3c8z_A Cysteinyl-tRNA syntheta 100.0 5.4E-35 1.8E-39 306.4 26.5 301 84-504 37-390 (414)
14 3sp1_A Cysteinyl-tRNA syntheta 100.0 7.6E-35 2.6E-39 307.0 23.3 327 86-503 42-416 (501)
15 1rqg_A Methionyl-tRNA syntheta 100.0 1.1E-32 3.8E-37 306.9 27.8 330 85-509 2-473 (722)
16 3u1f_A Methionyl-tRNA syntheta 100.0 1.1E-30 3.9E-35 283.4 25.6 330 82-509 6-451 (542)
17 1wkb_A Leucyl-tRNA synthetase; 100.0 2E-26 6.7E-31 260.8 30.3 137 329-510 634-772 (810)
18 1ile_A Ilers, isoleucyl-tRNA s 99.9 7.8E-26 2.7E-30 255.8 24.1 169 299-506 547-719 (821)
19 2o5r_A Glutamyl-tRNA synthetas 99.9 2.6E-26 8.8E-31 243.2 17.1 150 253-426 182-335 (481)
20 1gax_A Valrs, valyl-tRNA synth 99.9 5.3E-25 1.8E-29 248.3 27.5 156 59-252 8-169 (862)
21 1irx_A Lysyl-tRNA synthetase; 99.9 4.5E-27 1.6E-31 253.4 8.9 247 92-422 26-325 (523)
22 1ffy_A Isoleucyl-tRNA syntheta 99.9 1.9E-25 6.5E-30 253.9 21.5 164 299-507 551-721 (917)
23 2v0c_A Aminoacyl-tRNA syntheta 99.9 2.2E-24 7.6E-29 244.2 26.7 123 347-507 636-760 (878)
24 3al0_C Glutamyl-tRNA(Gln) amid 99.9 1.7E-25 5.8E-30 241.7 14.0 270 59-425 104-430 (592)
25 4arc_A Leucine--tRNA ligase; l 99.9 1E-23 3.4E-28 237.3 26.5 142 58-252 25-172 (880)
26 3afh_A Glutamyl-tRNA synthetas 99.9 6.7E-22 2.3E-26 209.1 17.4 245 86-425 25-326 (488)
27 1nzj_A Hypothetical protein YA 99.9 1.7E-22 5.7E-27 201.4 10.8 233 91-413 9-288 (298)
28 1wz2_A Leucyl-tRNA synthetase; 99.9 2.5E-20 8.6E-25 213.7 27.6 137 329-510 634-772 (967)
29 4g6z_A Glutamate-tRNA ligase; 99.8 1.9E-19 6.4E-24 189.4 18.2 246 85-425 24-335 (490)
30 2cfo_A Glutamyl-tRNA synthetas 99.8 1.3E-19 4.6E-24 191.9 16.1 242 91-425 5-320 (492)
31 1j09_A Glutamyl-tRNA synthetas 99.8 2.1E-18 7.3E-23 181.6 17.7 242 91-425 5-315 (468)
32 4gri_A Glutamate--tRNA ligase; 99.8 1.4E-18 4.8E-23 185.8 13.2 246 86-425 24-345 (512)
33 2ja2_A Glutamyl-tRNA synthetas 99.8 4.4E-18 1.5E-22 180.0 15.8 139 265-425 183-329 (498)
34 3aii_A Glutamyl-tRNA synthetas 99.7 1.2E-17 4E-22 177.2 9.9 224 85-423 95-392 (553)
35 1qtq_A GLNRS, protein (glutami 99.6 1E-15 3.5E-20 162.5 15.4 264 61-424 9-355 (553)
36 2hz7_A Glutaminyl-tRNA synthet 99.6 2.8E-15 9.5E-20 165.6 14.4 215 59-367 47-341 (851)
37 3gdz_A Arginyl-tRNA synthetase 99.6 2.2E-15 7.5E-20 127.8 8.1 65 5-75 43-107 (109)
38 2cyb_A Tyrosyl-tRNA synthetase 98.3 8.3E-06 2.8E-10 82.1 13.5 60 293-362 169-228 (323)
39 2dlc_X Tyrosyl-tRNA synthetase 98.1 1.1E-05 3.7E-10 83.3 11.4 62 293-364 181-244 (394)
40 1n3l_A Tyrosyl-tRNA synthetase 98.0 6.5E-06 2.2E-10 84.4 7.2 60 293-362 177-237 (372)
41 2g36_A Tryptophanyl-tRNA synth 97.6 7.8E-05 2.7E-09 75.3 7.0 66 293-361 152-218 (340)
42 2cya_A Tyrosyl-tRNA synthetase 97.5 0.00018 6.3E-09 73.3 8.9 60 293-362 176-253 (364)
43 2zp1_A Tyrosyl-tRNA synthetase 97.3 0.00081 2.8E-08 67.1 9.7 59 293-365 162-221 (314)
44 3p0j_A Tyrosyl-tRNA synthetase 96.9 0.0023 7.8E-08 70.3 9.8 64 293-365 182-248 (690)
45 2pid_A Tyrosyl-tRNA synthetase 95.7 0.0044 1.5E-07 62.8 2.9 59 293-361 209-267 (356)
46 2yxn_A Tyrosyl-tRNA synthetase 95.3 0.008 2.7E-07 60.1 3.3 58 294-361 191-248 (322)
47 1jil_A Tyrrs, tyrosyl-tRNA syn 95.0 0.017 5.7E-07 59.8 4.6 59 293-361 185-244 (420)
48 2jan_A Tyrosyl-tRNA synthetase 95.0 0.01 3.5E-07 61.5 3.0 60 292-361 185-245 (432)
49 2ts1_A Tyrosyl-tRNA synthetase 94.9 0.015 5.1E-07 60.1 4.0 59 293-361 184-243 (419)
50 1h3f_A Tyrosyl-tRNA synthetase 94.4 0.027 9.3E-07 58.4 4.3 59 293-361 186-245 (432)
51 2el7_A Tryptophanyl-tRNA synth 94.2 0.014 4.9E-07 58.6 1.7 63 293-361 140-208 (337)
52 2ip1_A Tryptophanyl-tRNA synth 93.9 0.031 1.1E-06 58.0 3.7 59 294-362 249-310 (432)
53 3tzl_A Tryptophanyl-tRNA synth 93.6 0.012 4E-07 58.9 -0.2 66 293-361 138-205 (322)
54 1yi8_B Tryptophanyl-tRNA synth 93.2 0.027 9.3E-07 56.9 1.7 67 293-362 161-229 (351)
55 1r6t_A Tryptophanyl-tRNA synth 92.9 0.083 2.8E-06 55.5 5.0 58 302-367 309-369 (477)
56 1y42_X Tyrosyl-tRNA synthetase 92.9 0.024 8.4E-07 58.0 0.9 65 293-361 231-306 (392)
57 3vgj_A Tyrosyl-tRNA synthetase 92.5 0.058 2E-06 54.9 3.0 61 293-362 199-262 (373)
58 3i05_A Tryptophanyl-tRNA synth 92.5 0.047 1.6E-06 55.9 2.3 53 301-361 229-283 (395)
59 1r6u_A Tryptophanyl-tRNA synth 92.3 0.037 1.3E-06 57.4 1.3 53 302-362 262-317 (437)
60 3hv0_A Tryptophanyl-tRNA synth 92.2 0.043 1.5E-06 56.2 1.6 53 301-361 225-280 (393)
61 3tze_A Tryptophanyl-tRNA synth 91.9 0.075 2.6E-06 54.6 3.0 53 301-361 248-303 (406)
62 3jxe_A Tryptophanyl-tRNA synth 91.8 0.052 1.8E-06 55.5 1.7 57 301-365 212-271 (392)
63 2yy5_A Tryptophanyl-tRNA synth 91.7 0.042 1.4E-06 55.4 0.9 68 293-362 146-219 (348)
64 2j5b_A Tyrosyl-tRNA synthetase 91.4 0.076 2.6E-06 53.5 2.3 62 294-365 186-250 (348)
65 1i6k_A TRPRS, tryptophanyl-tRN 90.9 0.09 3.1E-06 52.5 2.4 67 293-362 136-209 (328)
66 3hzr_A Tryptophanyl-tRNA synth 90.9 0.17 5.7E-06 51.6 4.4 52 302-361 230-283 (386)
67 2cyc_A Tyrosyl-tRNA synthetase 89.2 0.16 5.3E-06 51.8 2.5 66 293-362 179-266 (375)
68 3a04_A Tryptophanyl-tRNA synth 88.3 0.26 8.8E-06 50.1 3.4 57 301-361 213-270 (372)
69 3foc_A Tryptophanyl-tRNA synth 87.8 0.13 4.4E-06 53.4 0.8 53 301-361 292-347 (451)
70 2el7_A Tryptophanyl-tRNA synth 83.8 0.33 1.1E-05 48.6 1.5 39 91-134 5-44 (337)
71 3sz3_A Tryptophanyl-tRNA synth 81.7 0.22 7.5E-06 49.9 -0.8 67 293-361 142-217 (341)
72 3hzr_A Tryptophanyl-tRNA synth 81.2 1.3 4.4E-05 45.1 4.6 44 85-135 81-125 (386)
73 3prh_A Tryptophanyl-tRNA synth 80.8 0.39 1.3E-05 48.9 0.7 66 293-361 170-242 (388)
74 3n9i_A Tryptophanyl-tRNA synth 79.6 0.38 1.3E-05 48.2 0.1 64 293-361 151-223 (346)
75 3a04_A Tryptophanyl-tRNA synth 78.3 1.3 4.4E-05 44.9 3.6 44 84-134 68-111 (372)
76 1i6k_A TRPRS, tryptophanyl-tRN 75.5 1 3.6E-05 44.7 1.9 38 91-134 5-42 (328)
77 3vgj_A Tyrosyl-tRNA synthetase 74.2 2.1 7.1E-05 43.3 3.8 39 91-134 60-98 (373)
78 3jxe_A Tryptophanyl-tRNA synth 70.8 2.1 7.2E-05 43.6 2.9 41 87-134 74-115 (392)
79 1yi8_B Tryptophanyl-tRNA synth 69.9 1.7 5.9E-05 43.6 2.0 39 87-134 23-63 (351)
80 1y42_X Tyrosyl-tRNA synthetase 69.2 2.5 8.7E-05 43.0 3.1 38 91-134 68-106 (392)
81 2ts1_A Tyrosyl-tRNA synthetase 68.5 3.5 0.00012 42.3 4.0 38 91-134 34-72 (419)
82 3tzl_A Tryptophanyl-tRNA synth 68.1 1.4 4.7E-05 43.7 0.8 38 91-134 7-44 (322)
83 2jan_A Tyrosyl-tRNA synthetase 67.1 3.9 0.00013 42.2 4.0 38 91-134 36-74 (432)
84 2j5b_A Tyrosyl-tRNA synthetase 66.7 4.3 0.00015 40.6 4.1 39 91-134 44-82 (348)
85 2yxn_A Tyrosyl-tRNA synthetase 65.6 3.5 0.00012 40.8 3.2 38 91-134 37-75 (322)
86 2yy5_A Tryptophanyl-tRNA synth 65.4 1.9 6.4E-05 43.3 1.2 38 91-134 8-45 (348)
87 1jil_A Tyrrs, tyrosyl-tRNA syn 64.2 3.8 0.00013 42.1 3.2 41 87-134 33-74 (420)
88 2pid_A Tyrosyl-tRNA synthetase 64.1 4.2 0.00014 40.8 3.5 41 87-134 47-88 (356)
89 3i05_A Tryptophanyl-tRNA synth 63.6 5.9 0.0002 40.3 4.5 43 85-134 77-121 (395)
90 1h3f_A Tyrosyl-tRNA synthetase 61.1 5.4 0.00018 41.1 3.7 43 87-136 38-81 (432)
91 1r6t_A Tryptophanyl-tRNA synth 60.3 6.5 0.00022 41.0 4.2 44 84-134 153-198 (477)
92 3hv0_A Tryptophanyl-tRNA synth 60.0 5.8 0.0002 40.4 3.6 44 86-136 74-119 (393)
93 3tze_A Tryptophanyl-tRNA synth 55.5 9.9 0.00034 38.8 4.5 44 84-134 99-144 (406)
94 1r6u_A Tryptophanyl-tRNA synth 54.9 7.5 0.00026 40.1 3.5 44 84-134 106-151 (437)
95 3foc_A Tryptophanyl-tRNA synth 54.8 8.5 0.00029 39.8 3.9 44 85-135 90-135 (451)
96 3sz3_A Tryptophanyl-tRNA synth 54.0 4 0.00014 40.7 1.2 38 91-134 10-47 (341)
97 2ip1_A Tryptophanyl-tRNA synth 53.0 8.9 0.00031 39.5 3.7 42 86-134 102-145 (432)
98 3prh_A Tryptophanyl-tRNA synth 51.7 5.2 0.00018 40.6 1.7 38 91-134 39-76 (388)
99 2cyc_A Tyrosyl-tRNA synthetase 43.7 12 0.0004 37.8 2.8 39 91-134 37-75 (375)
100 2wh6_B BCL-2-like protein 11; 34.4 27 0.00093 20.3 2.1 18 490-507 7-24 (26)
101 3g5j_A Putative ATP/GTP bindin 31.1 71 0.0024 25.9 5.4 30 85-127 90-119 (134)
102 3r6u_A Choline-binding protein 29.3 39 0.0013 32.4 3.8 39 98-136 12-54 (284)
103 1vee_A Proline-rich protein fa 27.4 91 0.0031 25.7 5.5 58 51-127 46-104 (134)
104 3n9i_A Tryptophanyl-tRNA synth 27.3 16 0.00054 36.4 0.6 36 91-134 19-56 (346)
105 1qm9_A Polypyrimidine tract-bi 26.5 98 0.0034 26.9 5.8 35 97-131 120-154 (198)
106 2fsx_A RV0390, COG0607: rhodan 26.0 60 0.002 27.4 4.1 31 83-127 79-110 (148)
107 1pq1_B BCL2-like protein 11; B 22.9 50 0.0017 20.4 2.0 18 490-507 7-24 (33)
108 3kj0_B BCL-2-like protein 11; 20.9 61 0.0021 19.0 2.0 17 491-507 10-26 (27)
109 2adc_A Polypyrimidine tract-bi 20.7 1.5E+02 0.005 26.8 5.9 36 97-132 151-186 (229)
No 1
>1f7u_A Arginyl-tRNA synthetase; RNA-protein complex, aminoacylation; HET: PSU 1MG 2MG H2U M2G 5MC 5MU 1MA ARG; 2.20A {Saccharomyces cerevisiae} SCOP: a.27.1.1 c.26.1.1 d.67.2.1 PDB: 1bs2_A* 1f7v_A*
Probab=100.00 E-value=6.8e-106 Score=874.92 Aligned_cols=486 Identities=29% Similarity=0.469 Sum_probs=427.4
Q ss_pred ccHHHHHHHHhhcCCCCCCCChHHHHHHHHHhCCCCCCceeeEeccCCeEEEEeCHHHHHHHH-HHHHHcCCCCC-CCcC
Q 010356 5 CSNNAMGLWSKIKGKGTEFKGPQPVGQAIMKNLPPSEMIESCSVAGPGFVNVVLSKNWMAKNI-QKMLVDGIETW-APKL 82 (512)
Q Consensus 5 ~~n~a~~~ak~~~~~~~~~~~p~~iA~~i~~~l~~~~~i~~v~~~g~GfiN~~l~~~~~~~~~-~~~~~~~~~~~-~~~~ 82 (512)
|||+|| +|.+| ++|++||++|+++|+.+++|++++++|| ||||+|+++++.+.+ ..++..+..++ .+.+
T Consensus 70 a~~~~~--~k~~~------~~P~~iA~~i~~~l~~~~~i~~ve~ag~-fiN~~l~~~~~~~~~~~~i~~~~~~~G~~~~~ 140 (607)
T 1f7u_A 70 LIPIPR--LRIKG------ANPKDLAVQWAEKFPCGDFLEKVEANGP-FIQFFFNPQFLAKLVIPDILTRKEDYGSCKLV 140 (607)
T ss_dssp EEEGGG--GCCTT------CCHHHHHHHHHHTCCCTTTEEEEEEETT-EEEEEECHHHHHHHHHHHHHHHGGGTTCCCCS
T ss_pred hhHHHH--HHhcC------CCHHHHHHHHHHhccccCceeEEEEcCC-EEEEEECHHHHHHHHHHHHHhhhhhcCCCccc
Confidence 577766 38888 9999999999999987788999999996 999999999999755 45665554432 2345
Q ss_pred CCceEEEEeeCCCCCCCCcccchhhhhHHHHHHHHHHHCCCeEEEeeccCccchHHHHHHHHHHhhCCCCCccCcccHHH
Q 010356 83 RVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGE 162 (512)
Q Consensus 83 ~~~~v~Ve~~spNp~~~lHvGH~R~~iiGD~lar~l~~~G~~V~~~~~i~D~G~qi~~l~~~~~~~~~~~~~~~~~~i~~ 162 (512)
.+++|+||||||||+||+||||+||+|+||+|+|+|+++||+|+++||+||||+||++++.+ +.++++.+....+++.+
T Consensus 141 ~~~~V~ve~~spN~~~plHvGHlRs~iiGD~laRil~~~G~~V~~~~~i~D~G~Q~~~l~~~-~~~~g~~~~~~~~~i~~ 219 (607)
T 1f7u_A 141 ENKKVIIEFSSPNIAKPFHAGHLRSTIIGGFLANLYEKLGWEVIRMNYLGDWGKQFGLLAVG-FERYGNEEALVKDPIHH 219 (607)
T ss_dssp SCCEEEEECCCCBTTSCCBGGGHHHHHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHH-HHHHCCHHHHHHCHHHH
T ss_pred CCCeEEEEecCCCCCCCCccchHHHHHHHHHHHHHHHHcCCCeeEEEeecCcchHHHHHHHH-HHHhCchhhccCCChHH
Confidence 68899999999999999999999999999999999999999999999999999999999877 45566433223457888
Q ss_pred HHHHHHHHhcccCCC-------hHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHcCCeEe-eecccccc-
Q 010356 163 LQEFYRRSKNRFDSD-------PAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLE-EKGESFYN- 233 (512)
Q Consensus 163 l~~~y~~~~~~~~~~-------~~~~~~~~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~L~I~f~-~~~es~~~- 233 (512)
+.++|+++++.++++ +.+.++|++.+.+||+||+++.++|++++++++++|+++|++|||+|| |.+||.|.
T Consensus 220 l~~~Y~~~~~~~~~~~e~g~~~~~i~~~A~~~~~~le~gd~e~~~~w~~~~~~~~~~~~~~~~~L~V~fD~~~~ES~~~~ 299 (607)
T 1f7u_A 220 LFDVYVRINKDIEEEGDSIPLEQSTNGKAREYFKRMEDGDEEALKIWKRFREFSIEKYIDTYARLNIKYDVYSGESQVSK 299 (607)
T ss_dssp HHHHHHHHHHHHHHSTTSSCHHHHSSHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSEEEEGGGCCH
T ss_pred HHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCcceeecCcchhhh
Confidence 999999999888877 889999999999999999999999999999999999999999999995 77899887
Q ss_pred CchHHHHHHHHhCCCeeeeCceEEEEec--CCCCC-eEEEecCCccccccchHHHHHHHHhhcCCceEEEEeeCcccchH
Q 010356 234 PYIPGVIDELSKQGLVEESQGARVIFIE--GVNIP-LIIVKSDGGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHF 310 (512)
Q Consensus 234 ~~v~~~~~~L~~~g~~~~~dGa~~~~~~--g~~~d-~vl~ksDG~~~Y~~~DiA~~~~k~~~~~~d~~iyV~g~~q~~hf 310 (512)
+.++++++.|+++|++|+++|++||+++ |++.| +|++|+||+++|.++|+|+|+||+..+++|++|||||++|++||
T Consensus 300 ~~~~~vi~~L~~kG~~ye~dGa~~~~~~~~g~~~d~~v~~KsDG~~~Y~t~Dia~~~~k~~~~~~d~~IyV~g~~q~~~f 379 (607)
T 1f7u_A 300 ESMLKAIDLFKEKGLTHEDKGAVLIDLTKFNKKLGKAIVQKSDGTTLYLTRDVGAAMDRYEKYHFDKMIYVIASQQDLHA 379 (607)
T ss_dssp HHHHHHHHHHHHTTCEEEETTEEEEEGGGTCTTTCEEEEECTTSCCCHHHHHHHHHHHHHHHHCCSEEEEECCGGGHHHH
T ss_pred hHHHHHHHHHHhCCCEEEECCcEEEEecccCCCCCceeEeccCCCcCCCCCcHHHHHHHHhhcCCCcEEEEEcChHhhHH
Confidence 7899999999999999999999999988 33444 89999999999999999999999977899999999999999999
Q ss_pred HHHHHHHHHcCCCCCCCCCCCceEEEEeEEEECCCCcceeeecCCeecHHHHHHHHHHHHHHHHHHhcCCCCC-CHHHHH
Q 010356 311 DMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAKNRSKAVLIERGKDKEW-TEEELE 389 (512)
Q Consensus 311 ~~l~~~~~~~g~~~~~~~~~~~~~Hv~~g~V~~~~g~kmSkR~G~~v~l~dll~~~~~~~~~~~~~~~~~~~~-~~~~~~ 389 (512)
+|++++++++|+ +++..|+|++||+|. |||||+||+|+++||++++..+|.+.+.++. ..+ ..++..
T Consensus 380 ~q~~~~~~~lG~-----~~~~~~~Hv~fg~v~-----kMSkR~G~~v~L~dLlde~~~~a~~~~~~~~--~~~~~~~e~~ 447 (607)
T 1f7u_A 380 AQFFEILKQMGF-----EWAKDLQHVNFGMVQ-----GMSTRKGTVVFLDNILEETKEKMHEVMKKNE--NKYAQIEHPE 447 (607)
T ss_dssp HHHHHHHHHTTC-----GGGGGEEEECCCCEE-----SCCGGGTCCCBHHHHHHHHHHHHHHHHHTCH--HHHTTCSCHH
T ss_pred HHHHHHHHHcCC-----CcCcEEEEecccccc-----cccCCCCCcccHHHHHHHHHHHHHHHHHhCc--ccccchhhHH
Confidence 999999999998 346679999999986 4999999999999999999998876665321 001 135778
Q ss_pred HHHHhhchhhHHHHhhccCCCCCccccccccccccCCchHHHHHHHHHHHHHHHhh-cCChhhhhhcCCCCCCCHHHHHH
Q 010356 390 QTAEAVGYGAAKYFDLKNNRLTNYTFSFDQMLNDKGNTAVYLLYAHARICSIIRKS-GKDIEELKKTGSLVLDHADERAL 468 (512)
Q Consensus 390 ~~a~~~~~~airy~~L~~~~~~~~~Fd~~~~~~~~~~~g~ylqY~~aR~~sil~k~-~~~~~~~~~~~~~~l~~~~e~~L 468 (512)
++|+++|++|||||+|+.++.++++|||+++++++|||||||||||||+|||+||+ +.....+...+...+.++.|++|
T Consensus 448 ~~a~~vgi~avry~~Ls~~~~s~~~Fd~d~~~~~~g~t~pylqYa~aRi~SIlrka~~~~~~~~~~~~~~~l~~~~e~~L 527 (607)
T 1f7u_A 448 EVADLVGISAVMIQDMQGKRINNYEFKWERMLSFEGDTGPYLQYAHSRLRSVERNASGITQEKWINADFSLLKEPAAKLL 527 (607)
T ss_dssp HHHHHHHHHHHHHHHHSSCTTCCEECCHHHHHCCSSSSHHHHHHHHHHHHHHHHHTTTSCHHHHTTSCGGGCCSHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCCCCCcccCHHHHHHHhccchHHHHHHHHHHHHHHHHhcCCCcccccccchhhcCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999998 43322111122233568999999
Q ss_pred HHHHHhhHHHHHHHHHhcChHHHHHHHHHHHHHHhcchhcccCC
Q 010356 469 GLHLLHFSEVIEEALTNLLPNVVCEYLYNLSEYFTRFYSNCQVQ 512 (512)
Q Consensus 469 ~~~l~~~~~~v~~a~~~~~p~~l~~yl~~La~~fn~fY~~~~vl 512 (512)
++.|.+||+++++|+++++||.+|+||++||+.||+||++||||
T Consensus 528 ~~~l~~fp~vv~~a~~~~~P~~l~~Yl~~La~~fn~fY~~~~Vl 571 (607)
T 1f7u_A 528 IRLLGQYPDVLRNAIKTHEPTTVVTYLFKLTHQVSSCYDVLWVA 571 (607)
T ss_dssp HHHHTTHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCST
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 99999999999999999999999999999999999999999997
No 2
>2zue_A Arginyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding, protein biosynthesis, ligase/RNA complex; HET: ANP; 2.00A {Pyrococcus horikoshii} PDB: 2zuf_A
Probab=100.00 E-value=5.2e-103 Score=858.05 Aligned_cols=488 Identities=25% Similarity=0.351 Sum_probs=429.8
Q ss_pred ccHHHHHHHHhhcCCCCCCCChHHHHHHHHHhCCC--CCCceeeEeccCCeEEEEeCHHHHHH-HHHHHHHcCCCC-CCC
Q 010356 5 CSNNAMGLWSKIKGKGTEFKGPQPVGQAIMKNLPP--SEMIESCSVAGPGFVNVVLSKNWMAK-NIQKMLVDGIET-WAP 80 (512)
Q Consensus 5 ~~n~a~~~ak~~~~~~~~~~~p~~iA~~i~~~l~~--~~~i~~v~~~g~GfiN~~l~~~~~~~-~~~~~~~~~~~~-~~~ 80 (512)
|||+||.|||.+| ++|++||++|++.|+. ++.|++++++| |||||+|+++++.. ++..++..+..+ ..+
T Consensus 42 ~~n~a~~lak~~~------~~P~~iA~~i~~~l~~~~~~~i~~vevag-GfiN~~l~~~~~~~~~~~~i~~~~~~yG~~~ 114 (629)
T 2zue_A 42 GTPIAFKLAKLLK------RPPIEIAEKIVEKLKLNLPEGIKDVKAVN-GYINVFIDYPHFARILINDILAKGDRFGSSE 114 (629)
T ss_dssp EECHHHHHHHHHT------SCHHHHHHHHHHHHTTSCCTTEEEEEEET-TEEEEEECHHHHHHHHHHHHHHHGGGTTCCC
T ss_pred eHHHHHHHHHHcC------CCHHHHHHHHHHHhhhccCCCeEEEEEcC-CEEEEEECHHHHHHHHHHHHHhcchhcCCCc
Confidence 7999999999999 9999999999999986 67899999999 99999999995554 455666655443 233
Q ss_pred cCCCceEEEEeeCCCCCCCCcccchhhhhHHHHHHHHHHHCCCeEEEeeccCccchHHHHHHHHHHhhCCCCCcc-----
Q 010356 81 KLRVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDA----- 155 (512)
Q Consensus 81 ~~~~~~v~Ve~~spNp~~~lHvGH~R~~iiGD~lar~l~~~G~~V~~~~~i~D~G~qi~~l~~~~~~~~~~~~~~----- 155 (512)
.+.+++|+||||||||+||+||||+||+|+||+|||+|+++||+|+++|||||||+||++++.+.. +++..+..
T Consensus 115 ~~~~~~V~ve~~spN~~~~~HiGH~Rs~iigD~laR~l~~~G~~V~~~~~i~D~G~Q~~~l~~~~~-~~g~~~~~~~~~~ 193 (629)
T 2zue_A 115 IGKGKKVIVEHTSVNPTKPLHMGHARNAILGDVMARILRFLGYEVEVQNYIDDLGIQFAQVYWGYL-RLKEEFERIMNEL 193 (629)
T ss_dssp TTTTCEEEEECCCCCTTSCCBHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECTTSHHHHHHHHHHH-HCHHHHHHHHHHH
T ss_pred cCCCCEEEEEeeCCCCCCCCccchhHHHHHHHHHHHHHHHcCCCceEEecccchhHHHHHHHHHHH-HhCCcchhhhhhh
Confidence 467889999999999999999999999999999999999999999999999999999999986543 23321100
Q ss_pred -----CcccH-HHHHHHHHHHhcccCCChHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHcCCeEe-eec
Q 010356 156 -----NETAI-GELQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLE-EKG 228 (512)
Q Consensus 156 -----~~~~i-~~l~~~y~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~L~I~f~-~~~ 228 (512)
.++++ .++.+.|+++++.++.+|+|.+++++.+.++|+|| ..|+.+++.+++.|+++|++|||+|| |.+
T Consensus 194 ~~~~~~~~~~d~~~g~~y~~~a~~~~~~~~~~~~~~~~~~~~e~gd----~~~~~~~~~~~~~f~~~~~~L~I~~D~~~~ 269 (629)
T 2zue_A 194 RERGLKDNPIDHALGLLYVEVNRRLEDNPELENEIRDIMKKLESGE----LYGRKLAEEVVRAQMVTTYKLGVKYDLLVW 269 (629)
T ss_dssp HHHTSCSCCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHSS----SCCHHHHHHHHHHHHHHHHHHTCCCSEEEE
T ss_pred cccccccCcchhhHHHHHHHHHHHHhcCchHHHHHHHHHHhccccc----HHHHHHHHHHHHHHHHHHHHcCCccccccC
Confidence 23455 44678899988888889999999999999999998 79999999999999999999999995 778
Q ss_pred cccc--cCchHHHHHHHHhCCCee-----eeCceEEEEec--CCCCC---eEEEecCCccccccchHHHHHHH-------
Q 010356 229 ESFY--NPYIPGVIDELSKQGLVE-----ESQGARVIFIE--GVNIP---LIIVKSDGGFNYASTDLAALWYR------- 289 (512)
Q Consensus 229 es~~--~~~v~~~~~~L~~~g~~~-----~~dGa~~~~~~--g~~~d---~vl~ksDG~~~Y~~~DiA~~~~k------- 289 (512)
||.| .+.++++++.|+++|++| +.+|++|++++ |++++ +|++|+||+++|+++|+||++||
T Consensus 270 es~~~~~~~v~~vi~~L~~kG~~y~~~~ge~~Ga~~v~~~~~g~~~~~~~~v~~ksdG~~~Y~~~Diay~~~K~~ll~~~ 349 (629)
T 2zue_A 270 ESDIVRRKLFEIALELLSKNENFYIPSDGKYRGAFVMDLRKLFPDMKNPILVLRRSDGTATYTGKDIAYHLWKFGKIDVD 349 (629)
T ss_dssp HHHHHHTTHHHHHHHHHHTSTTEECCSSSTTTTCEEEECTTTCSSSSCCEEEEECTTSCBCHHHHHHHHHHHHTTCSCCC
T ss_pred cCccccchhHHHHHHHHHHCCCccccccCCcCCcEEEECcccCCccccCceEEEecCCccccchhhHHHHHHHhhccccc
Confidence 9887 889999999999999999 88999999998 55556 89999999999999999999995
Q ss_pred --Hhhc-------------------CCceEEEEeeCcccchHHHHHHHHHHcCCCCCCCCC-CCceEEEEeEEEECCCCc
Q 010356 290 --LNEE-------------------KAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDST-YPKASHVGFGLVLGEDGK 347 (512)
Q Consensus 290 --~~~~-------------------~~d~~iyV~g~~q~~hf~~l~~~~~~~g~~~~~~~~-~~~~~Hv~~g~V~~~~g~ 347 (512)
...+ ++|++|||||++|+.||+|++++++++|+. + +..|.|++||||+. +|+
T Consensus 350 fr~~~~~~~~~~~~~wG~~~Pg~~~~~d~~IyV~g~~q~~~~~~l~~~l~~lG~~-----~~~~~~~h~~~g~V~~-~~~ 423 (629)
T 2zue_A 350 LLYKEWDSTTWTTAPDGKSMPNKFGNANIVINVIGAEQKHPQLAIKYALQLLGFE-----DAAANLYHLAYEHVER-PEG 423 (629)
T ss_dssp CEEEECSSSCEEEEEEEEECTTSSCCCSEEEEEEEGGGHHHHHHHHHHHHHTTCH-----HHHHTEEEEEECCEEB-TTB
T ss_pred ccCCcccccccccCCCCCCCCCccCCCCcEEEEEeCcHhhHHHHHHHHHHHcCCC-----CCCCeEEEEEeeeEEc-CCC
Confidence 5444 899999999999999999999999999983 3 44799999999996 467
Q ss_pred ceeeecC--CeecHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhchhhHHHHhhccCCCCCccccccccccccC
Q 010356 348 RLRTRFS--EVVRLVDLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNRLTNYTFSFDQMLNDKG 425 (512)
Q Consensus 348 kmSkR~G--~~v~l~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~airy~~L~~~~~~~~~Fd~~~~~~~~~ 425 (512)
|||||+| |+|+++||++++.++|.+.+.++++ ++++++.+++|+++|++|+|||+|+.++.++++|||+.+++++|
T Consensus 424 KMSkr~G~~n~v~l~dLl~e~~~~a~~~~~~~~~--~~~~~~~~~~a~~vg~~AvRy~~L~~~~~~~~~Fd~d~~~~~~~ 501 (629)
T 2zue_A 424 KFSGRKGTWVGFTVDEVIQEAVKRARELIEEKNP--ALSDEEKAEVAEKVGIGAIRYNLIKYSPDKKIIFRWEDVLNFEG 501 (629)
T ss_dssp CCCTTTTTTTTCBHHHHHHHHHHHHHHHHHHHCT--TSCHHHHHHHHHHHHHHHHHHHHHSSCTTSCEECCHHHHSCCSS
T ss_pred cccCCCCCCCeeeHHHHHHHHHHHHHHHHHhcCc--ccchhhHHHHHHhcChhHhhHHHHhcCCCCCCeecHHHHHHHhc
Confidence 8999999 9999999999999999999998854 58999999999999999999999999999999999999999999
Q ss_pred CchHHHHHHHHHHHHHHHhhcCCh-----hhhhhcCCCCCCCHHHHHHHHHHHhhHHHHHHHHHhcChHHHHHHHHHHHH
Q 010356 426 NTAVYLLYAHARICSIIRKSGKDI-----EELKKTGSLVLDHADERALGLHLLHFSEVIEEALTNLLPNVVCEYLYNLSE 500 (512)
Q Consensus 426 ~~g~ylqY~~aR~~sil~k~~~~~-----~~~~~~~~~~l~~~~e~~L~~~l~~~~~~v~~a~~~~~p~~l~~yl~~La~ 500 (512)
||++||||+|+|+|||++|++... ..++......+.++.|++|+..|.+||+++++|+++++||++|+||++||+
T Consensus 502 ~t~~ylqYa~aRi~Silrka~~~~~~~~~~~~~~~~~~~l~~~~e~~L~~~l~~fp~~v~~a~~~~~p~~l~~yl~~La~ 581 (629)
T 2zue_A 502 ESAPYIQYAHARCSSILRKAEEEGIKVDPETLFKNADFTKLSERERELVIMLSKFPRIVEQAGKDVKPHLIAWFANELAS 581 (629)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHCCCSSCCHHHHHHHHHHHHHHHHHHHHHHTTCTHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHhhhccccccccccccccccccCCCHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 999999999999999999985322 000111112345789999999999999999999999999999999999999
Q ss_pred HHhcchhcccCC
Q 010356 501 YFTRFYSNCQVQ 512 (512)
Q Consensus 501 ~fn~fY~~~~vl 512 (512)
.||+||++||||
T Consensus 582 ~fn~fy~~~~vl 593 (629)
T 2zue_A 582 LFNKFYMDHPVL 593 (629)
T ss_dssp HHHHHHHHCCST
T ss_pred HHHHHHHhcccc
Confidence 999999999997
No 3
>1iq0_A Arginyl-tRNA synthetase; riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; 2.30A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 d.67.2.1
Probab=100.00 E-value=1e-94 Score=790.14 Aligned_cols=470 Identities=26% Similarity=0.350 Sum_probs=410.2
Q ss_pred ccHHHHHHHHhhcCCCCCCCChHHHHHHHHHhCCCCCCceeeEeccCCeEEEEeCHHHHHHHHHH-HHHcCCCCCCCcCC
Q 010356 5 CSNNAMGLWSKIKGKGTEFKGPQPVGQAIMKNLPPSEMIESCSVAGPGFVNVVLSKNWMAKNIQK-MLVDGIETWAPKLR 83 (512)
Q Consensus 5 ~~n~a~~~ak~~~~~~~~~~~p~~iA~~i~~~l~~~~~i~~v~~~g~GfiN~~l~~~~~~~~~~~-~~~~~~~~~~~~~~ 83 (512)
|||+ |.|||.+| ++|++||++|+++|+.+++|++++++| |||||+|+++++...+.+ ++..+.. +
T Consensus 37 ~~~~-~~lak~~~------~~P~~iA~~i~~~l~~~~~~~~~~~~g-gfiN~~l~~~~~~~~~~~~~~~~~~~-~----- 102 (592)
T 1iq0_A 37 GVPL-FALAKELR------KPPQAIAQELKDRLPLPEFVEEAVPVG-GYLNFRLRTEALLREALRPKAPFPRR-P----- 102 (592)
T ss_dssp EEEC-SHHHHHTT------SCHHHHHHHHHHTCCCCTTEEEEEEET-TEEEEEECHHHHHHHHHSCCCCCCCE-E-----
T ss_pred hhhH-HHHHHHcC------CCHHHHHHHHHHhccccCcEEEEEEcC-CEEEEEECHHHHHHHHHHHHHhcCcc-c-----
Confidence 6895 99999999 999999999999998778899999999 999999999976666543 2222222 1
Q ss_pred CceEEEEeeCCCCCCCCcccchhhhhHHHHHHHHHHHCCCeEEEeeccCccchHHHHHHHHHHhhCCCCCccCcccHHHH
Q 010356 84 VKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGEL 163 (512)
Q Consensus 84 ~~~v~Ve~~spNp~~~lHvGH~R~~iiGD~lar~l~~~G~~V~~~~~i~D~G~qi~~l~~~~~~~~~~~~~~~~~~i~~l 163 (512)
+ +|+||||||||+||+||||+|++|+||+|||+|+++||+|+++|||||||+||++++.+.. +++.++.....+..++
T Consensus 103 g-~v~ve~~spn~~~~~HiGH~R~~iigD~laR~l~~~G~~V~~~~~i~D~G~q~~~li~~~~-~~g~d~~~~~~~d~~~ 180 (592)
T 1iq0_A 103 G-VVLVEHTSVNPNKELHVGHLRNIALGDAIARILAYAGREVLVLNYIDDTGRQAAETLFALR-HYGLTWDGKEKYDHFA 180 (592)
T ss_dssp E-EEEEECCCCCTTSCCBHHHHHHHHHHHHHHHHHHHTTEEEEEEEEECTTSHHHHHHHHHHH-HTTCCCCSSSCHHHHH
T ss_pred C-eEEEEeeCCCCCCCCcchHHHHHHHHHHHHHHHHHcCCceEEEeccCCcchHHHHHHHHHH-HhCCcccCCCCcchhH
Confidence 1 8999999999999999999999999999999999999999999999999999999876654 4555432111445667
Q ss_pred HHHHHHHhcccCCChHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHcCCeEe-eeccccc--cCchHHHH
Q 010356 164 QEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLE-EKGESFY--NPYIPGVI 240 (512)
Q Consensus 164 ~~~y~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~L~I~f~-~~~es~~--~~~v~~~~ 240 (512)
.++|+++++.++.+ +|.+++++.+.++|+|+ . +++++.+++.|+++|++|||+|| |.+||.+ .+.+++++
T Consensus 181 g~~y~~~~~~~~~~-~~~~~a~~~~~~~e~g~--~----~~~~~~~~~~~~~~~~~LgI~~D~~~~es~~~~~~~v~~~~ 253 (592)
T 1iq0_A 181 GRAYVRLHQDPEYE-RLQPAIEEVLHALERGE--L----REEVNRILLAQMATMHALNARYDLLVWESDIVRAGLLQKAL 253 (592)
T ss_dssp HHHHHHHHHCTTTG-GGHHHHHHHHHHHHTTT--T----HHHHHHHHHHHHHHHHHTTCCCSEEEEHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHHHhh-hHHHHHHHHHHhCCchH--H----HHHHHHHHHHHHHHHHHcCCEeEEeccCCcccccchHHHHH
Confidence 89999998888776 89999999999999998 1 78999999999999999999995 6788877 88999999
Q ss_pred HHHHhCCCee-----eeCceEEEEec--CCCCC---eEEEecCCccccccchHHHHHHH--------Hhhc---------
Q 010356 241 DELSKQGLVE-----ESQGARVIFIE--GVNIP---LIIVKSDGGFNYASTDLAALWYR--------LNEE--------- 293 (512)
Q Consensus 241 ~~L~~~g~~~-----~~dGa~~~~~~--g~~~d---~vl~ksDG~~~Y~~~DiA~~~~k--------~~~~--------- 293 (512)
+.|+++|++| +.+|++|++++ |++++ +|++|+||+++|+++|+|+++|| ...+
T Consensus 254 ~~L~~kG~~y~~~~g~~~G~~~~~~~~~g~~~~l~~~vi~ksdG~~~Y~~~D~a~~~~Kl~l~~~~~~~~~~~~p~~r~~ 333 (592)
T 1iq0_A 254 ALLEQSPHVFRPREGKYAGALVMDASPVIPGLEDPFFVLLRSNGTATYYAKDIAFQFWKMGILEGLRFRPYENPYYPGLR 333 (592)
T ss_dssp HHHTTSTTEECCSSSTTTTCEEEECTTTSCSCSCCEEEEECTTSCBCHHHHHHHHHHHHTTSSCCCEEEECCCSSCTTCE
T ss_pred HHHHHCCCcccCcccCcCCCEEEechhcCCCCCCCceEEEecCCceEEecchHHHHHHHhhhhhhhhhhhhhcCcchhhc
Confidence 9999999999 88999999998 55556 89999999999999999999995 4434
Q ss_pred -----------CCceEEEEeeCcccchHHHHHHHHHHcCCCCCCCCC-CCceEEEEeEEEECCCCcceeeecCCeecHHH
Q 010356 294 -----------KAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDST-YPKASHVGFGLVLGEDGKRLRTRFSEVVRLVD 361 (512)
Q Consensus 294 -----------~~d~~iyV~g~~q~~hf~~l~~~~~~~g~~~~~~~~-~~~~~Hv~~g~V~~~~g~kmSkR~G~~v~l~d 361 (512)
++|++|||||++|..||++++++++++|+. + +..|.|++||||+. +|+|||||+||+|+++|
T Consensus 334 w~~~g~~~~~~~~~~~iyV~g~~h~~~~~~~~~~~~alG~~-----~~~~~~~H~~~g~v~~-~g~KMSKr~Gn~v~l~d 407 (592)
T 1iq0_A 334 TSAPEGEAYTPKAEETINVVDVRQSHPQALVRAALALAGYP-----ALAEKAHHLAYETVLL-EGRQMSGRKGLAVSVDE 407 (592)
T ss_dssp EEEEEEEECCCCCSEEEEEEESSSCCCHHHHHHHHHHTTCH-----HHHTTEEEEEECCEEE-TTBCSCC----CCBHHH
T ss_pred ccccCcccCCCCCCEEEEEEeccHHHHHHHHHHHHHHcCCC-----CCCCcEEEEEeeEEEc-CCCcccCCCCCccCHHH
Confidence 899999999999999999999999999983 3 45799999999985 67889999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhchhhHHHHhhccCCCCCccccccccccccCCchHHHHHHHHHHHHH
Q 010356 362 LLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNRLTNYTFSFDQMLNDKGNTAVYLLYAHARICSI 441 (512)
Q Consensus 362 ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~airy~~L~~~~~~~~~Fd~~~~~~~~~~~g~ylqY~~aR~~si 441 (512)
|++++.+++.+.+.+++. +|+++| ++|+++|++++|||+|+.++.++++|||++++++++++++|+||+|+|+|||
T Consensus 408 ll~~~~~~~~~~~~~~~~--~~~~~e--~~a~~vg~~aiRyf~L~~~~~~~~~Fd~d~~~~~~~~~~~ylqya~aR~~si 483 (592)
T 1iq0_A 408 VLEEATRRARAIVEEKNP--DHPDKE--EAARMVALGAIRFSMVKTEPKKQIDFRYQEALSFEGDTGPYVQYAHARAHSI 483 (592)
T ss_dssp HHHHHHHHHHHHHHHHCT--TCSCHH--HHHHHHHHHHHHHHHHHSCTTSCEEECHHHHHCSSSSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCC--CCCcHH--HHHHhhcHHHHHHHHHhcCCCCCCeecHHHHHHHhccchHHHHHHHHHHHHH
Confidence 999999999999998854 577665 8999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCChhhhhhcCCCCCCCHHHHHHHHHHHhhHHHHHHHHHhcChHHHHHHHHHHHHHHhcchhcc-------cCC
Q 010356 442 IRKSGKDIEELKKTGSLVLDHADERALGLHLLHFSEVIEEALTNLLPNVVCEYLYNLSEYFTRFYSNC-------QVQ 512 (512)
Q Consensus 442 l~k~~~~~~~~~~~~~~~l~~~~e~~L~~~l~~~~~~v~~a~~~~~p~~l~~yl~~La~~fn~fY~~~-------~vl 512 (512)
++|++.+.. + + ..+.++.|++|+..|.+||+++++|+++++||.+|+||++||+.||+||++| |||
T Consensus 484 l~k~~~~~~--~--~-~~l~~~~e~~L~~~l~~~~~~v~~a~~~~~p~~~~~yl~~La~~fn~fy~~~~~~~~~~~vl 556 (592)
T 1iq0_A 484 LRKAGEWGA--P--D-LSQATPYERALALDLLDFEEAVLEAAEERTPHVLAQYLLDLAASWNAYYNARENGQPATPVL 556 (592)
T ss_dssp HHHHCCCCC--C--C-GGGCCHHHHHHHHHHTTHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCEETTEESSCST
T ss_pred HHhhcccCC--C--c-cCCCCHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHhccccccCCcee
Confidence 999864321 1 1 1234788999999999999999999999999999999999999999999999 886
No 4
>3fnr_A Arginyl-tRNA synthetase; transferase, PSI-2, NYSGXRC, struc genomics, protein structure initiative; 2.20A {Campylobacter jejuni}
Probab=100.00 E-value=3e-86 Score=699.00 Aligned_cols=400 Identities=20% Similarity=0.302 Sum_probs=336.9
Q ss_pred EEeCHHHHHHHHHHHHHcCCCCC-CCcCCCceEEEEeeCCCCCCCCcccchhhhhHHHHHHHHHHHCCCeEEEeeccCcc
Q 010356 56 VVLSKNWMAKNIQKMLVDGIETW-APKLRVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDW 134 (512)
Q Consensus 56 ~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~Ve~~spNp~~~lHvGH~R~~iiGD~lar~l~~~G~~V~~~~~i~D~ 134 (512)
|+|+++++.+.+.+++..++.++ .+. ++++|+||||||||+|||||||+||+++||+|||+++++||+|+++||||||
T Consensus 1 ~~l~~~~~~~~l~~i~~~~~~yG~~~~-~~~~v~vE~ss~n~~~~~h~gh~r~~~~gd~~~r~~~~~G~~v~r~nyi~D~ 79 (464)
T 3fnr_A 1 MSLSKTFLNELANQALTNPNDFTKGEK-KQESFLLEYVSANPTGPLHIGHARGAVFGDTLTRLARHLGYKFNTEYYVNDA 79 (464)
T ss_dssp --CCHHHHHHHHHHHHHSGGGTTCCCC-CSCEEEEECCCCCSSSSCBGGGHHHHHHHHHHHHHHHHTTCEEEEEEEECCC
T ss_pred CEECHHHHHHHHHHHHHhHHhcCCCCC-CCCEEEEEeCCCCCCCCCccchhHHHHHHHHHHHHHHHcCCceEEEeeeCCc
Confidence 68999999999999988665533 333 7889999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHhh-----CCC-----CCccCcccHHHHHH-HHHHHhcccCCChHHHHHHHHHHHHhccCChHHHHHHH
Q 010356 135 GTQFGMLIEYLFEK-----FPN-----SEDANETAIGELQE-FYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWA 203 (512)
Q Consensus 135 G~qi~~l~~~~~~~-----~~~-----~~~~~~~~i~~l~~-~y~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~w~ 203 (512)
|+||++|+.++..+ .+. ...+.++++.++++ ++.+....+. +|++...+|+
T Consensus 80 G~Q~g~l~~~~~~~y~~~~~~~~~~~p~~~y~g~~~~~~a~~~~~~~~~~~~------------------~~~~~~~~~~ 141 (464)
T 3fnr_A 80 GNQIYLLGLSILLSVKESILHENVEYPEQYYKGEYIVDLAKEAFEKFGKEFF------------------SEENIPSLAD 141 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHTSCCCCCCCSSCCCSHHHHHHHHHHHHHHCGGGC------------------SGGGHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhcCCCCCCchhhcCccHHHHHHHHHHHhcchhhc------------------CcHHHHHHHH
Confidence 99999998776432 111 11245666766643 2222222111 1455668999
Q ss_pred HHHHHHHHHHHHHHHHcCCeEe-eecc-ccccCchHHHHHHHHhCCCeeeeCceEEEEec--CCCCCeEEEecCCccccc
Q 010356 204 QICEISRKEFDKVYKRLRVDLE-EKGE-SFYNPYIPGVIDELSKQGLVEESQGARVIFIE--GVNIPLIIVKSDGGFNYA 279 (512)
Q Consensus 204 ~~~~~~~~~~~~~~~~L~I~f~-~~~e-s~~~~~v~~~~~~L~~~g~~~~~dGa~~~~~~--g~~~d~vl~ksDG~~~Y~ 279 (512)
.++++++++|+++|++|||+|| |++| |+|. .++++++.|+++|++|++|||+|++++ |+++|+||+||||++||+
T Consensus 142 ~~~~~~l~~~~~~~~~l~V~fD~~~~Ess~~~-~~~~vv~~L~~~g~~~e~dGa~~~~~~~~g~~~~~vl~ksDG~~~Y~ 220 (464)
T 3fnr_A 142 WAKDKMLVLIKQNLEQAKIKIDSYVSERSYYD-ALNATLESLKEHKGIYEQEGKIWLASSQKGDEKDRVIIREDGRGTYL 220 (464)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCSCEEEGGGGST-THHHHHHHHHHTTCEEEETTEEEECGGGGTCSSCEEEECTTSCBCHH
T ss_pred HHHHHHHHHHHHHHHHhCCCceeecCHHHHHH-HHHHHHHHHHHCCCEEEeCCeEEEEecccCCCCceEEEeCCCceehh
Confidence 9999999999999999999995 8899 6777 999999999999999999999999987 677899999999999999
Q ss_pred cchHHHHHHHHhhcCCceEEEEeeCcccchHHHHHHHHHHcCCCCCCCCCCCceEEEEeEEE-ECCCCc--ceeeecCCe
Q 010356 280 STDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLV-LGEDGK--RLRTRFSEV 356 (512)
Q Consensus 280 ~~DiA~~~~k~~~~~~d~~iyV~g~~q~~hf~~l~~~~~~~g~~~~~~~~~~~~~Hv~~g~V-~~~~g~--kmSkR~G~~ 356 (512)
|+|||++++|++ .++|++|||+|+||++||++++++++++|+.| ..+.|+.|||| ++.+|+ |||||+||+
T Consensus 221 t~DiA~~~~r~~-~~~d~~Iyv~G~dq~~~f~~l~~~l~~lG~~~------~~~~h~~~g~V~l~~dG~~~KMSKr~Gn~ 293 (464)
T 3fnr_A 221 AADIVYHKDKMS-RGYGKCINIWGADHHGYIPRMKAAMEFLGFDS------NNLEIILAQMVSLLKDGEPYKMSKRAGNF 293 (464)
T ss_dssp HHHHHHHHHHHT-SSCSEEEEEEEGGGGGGHHHHHHHHHTTTCCG------GGEEEEEECCEEEEETTEECCC---CCSS
T ss_pred hHHHHHHHHHHH-cCCCeEEEEecCcHHHHHHHHHHHHHHcCCCc------cceEEEEeeeEEecCCCcccCCcCcCCCC
Confidence 999999999995 57999999999999999999999999999953 37789999999 456775 999999999
Q ss_pred ecHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhchhhHHHHhhccCCCCCccccccccccccC-CchHHHHHHH
Q 010356 357 VRLVDLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNRLTNYTFSFDQMLNDKG-NTAVYLLYAH 435 (512)
Q Consensus 357 v~l~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~airy~~L~~~~~~~~~Fd~~~~~~~~~-~~g~ylqY~~ 435 (512)
|+++|++++ +|++++|||+++..+.++++|||+.++++.+ |+++|+||+|
T Consensus 294 v~l~dll~~-----------------------------~g~dalRy~~l~~~~~~d~~Fd~~~~~~~~n~npv~YlqYa~ 344 (464)
T 3fnr_A 294 ILMSDVVDE-----------------------------IGSDALRYIFLSKKCDTHLEFDISDLQKEDSSNPVYYINYAH 344 (464)
T ss_dssp CBHHHHHHH-----------------------------HCHHHHHHHTTSSCTTSCEEEEGGGGGCCSTTSHHHHHHHHH
T ss_pred CCHHHHHhh-----------------------------ccHHHHHHHHHhcCCCCCCccCHHHHHHHhCCCHHHHHHHHH
Confidence 999999998 7999999999999999999999999999754 4445999999
Q ss_pred HHHHHHHHhhcCChhhhhhcCCCCCCCHHHHHHHHHHHhhHHHHHHHHHhcChHHHHHHHHHHHHHHhcchhcccCC
Q 010356 436 ARICSIIRKSGKDIEELKKTGSLVLDHADERALGLHLLHFSEVIEEALTNLLPNVVCEYLYNLSEYFTRFYSNCQVQ 512 (512)
Q Consensus 436 aR~~sil~k~~~~~~~~~~~~~~~l~~~~e~~L~~~l~~~~~~v~~a~~~~~p~~l~~yl~~La~~fn~fY~~~~vl 512 (512)
+|+|||+||++.....++..+...+.++ |++|+..|.+||+++.+|+++++||++|+||++||..||+||++||||
T Consensus 345 aRi~silrk~~~~~~~~~~~~~~~L~~~-e~~Ll~~L~~~~~~v~~a~~~~ep~~i~~yL~~La~~~n~fY~~~~vl 420 (464)
T 3fnr_A 345 ARIHQVFAKAGKKIDDVMKADLQSLNQD-GVNLLFEALNLKAVLNDAFEARALQKIPDYLKNLAANFHKFYNENKVV 420 (464)
T ss_dssp HHHHHHHHHTTCCTTTSTTCCCTTCCHH-HHHHHHHHHTHHHHHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHCCCT
T ss_pred HHHHHHHHHhhccCCCccccChhhCChH-HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhCcCC
Confidence 9999999998643211121222345445 999999999999999999999999999999999999999999999996
No 5
>1li5_A Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys; cysteine, E.coli, ligase; 2.30A {Escherichia coli} SCOP: a.27.1.1 c.26.1.1 PDB: 1li7_A 1u0b_B
Probab=100.00 E-value=3.5e-42 Score=364.67 Aligned_cols=306 Identities=14% Similarity=0.207 Sum_probs=239.7
Q ss_pred CCceEEEEeeCCCCCCCCcccchhhhhHHHHHHHHHHHCCCeEEEeeccCccchHHHHHHHHHHhhCCCCCccCcccHHH
Q 010356 83 RVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGE 162 (512)
Q Consensus 83 ~~~~v~Ve~~spNp~~~lHvGH~R~~iiGD~lar~l~~~G~~V~~~~~i~D~G~qi~~l~~~~~~~~~~~~~~~~~~i~~ 162 (512)
.+++|.+++|||||+|++||||+|++|+||+|+|+|++.||+|.++++++|+|..|
T Consensus 19 ~~~~v~~yv~gPt~y~~~HiGHar~~v~~D~l~R~lr~~G~~V~~v~~~tD~d~ki------------------------ 74 (461)
T 1li5_A 19 HAGEVGMYVCGITVYDLCHIGHGRTFVAFDVVARYLRFLGYKLKYVRNITDIDDKI------------------------ 74 (461)
T ss_dssp STTEEEEEECCCBSSSCCBHHHHHHHHHHHHHHHHHHHHTCEEEEEECBBCCSHHH------------------------
T ss_pred CCCCeeEEEcCCcCCCCCcccccHHHHHHHHHHHHHHHcCCCEEEeecCCCCcHHH------------------------
Confidence 46789999999999999999999999999999999999999999999999988543
Q ss_pred HHHHHHHHhcccCCChHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHcCCeE-eeec-cccccCchHHHH
Q 010356 163 LQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDL-EEKG-ESFYNPYIPGVI 240 (512)
Q Consensus 163 l~~~y~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~L~I~f-~~~~-es~~~~~v~~~~ 240 (512)
..++.+ .|. .|+++++.+.+.|+++|++|||.+ ++++ +|.|.+.+++++
T Consensus 75 ----~~~A~~--------------------~g~-----~~~~~~~~~~~~f~~~~~~LgI~~~d~~~r~t~~~~~~~~~i 125 (461)
T 1li5_A 75 ----IKRANE--------------------NGE-----SFVAMVDRMIAEMHKDFDALNILRPDMEPRATHHIAEIIELT 125 (461)
T ss_dssp ----HHHHHH--------------------TTC-----CHHHHHHHHHHHHHHHHHHTTCCCCSBCCBGGGCHHHHHHHH
T ss_pred ----HHHHHH--------------------cCC-----CHHHHHHHHHHHHHHHHHHcCCCCCcccccccchHHHHHHHH
Confidence 222222 121 267899999999999999999998 7654 578988999999
Q ss_pred HHHHhCCCeeee-CceEEEEecC----------------------------CCCCeEEEec--CCccccccch-------
Q 010356 241 DELSKQGLVEES-QGARVIFIEG----------------------------VNIPLIIVKS--DGGFNYASTD------- 282 (512)
Q Consensus 241 ~~L~~~g~~~~~-dGa~~~~~~g----------------------------~~~d~vl~ks--DG~~~Y~~~D------- 282 (512)
++|.++|++|+. +|++||.++. +..|++++|+ +|.++|.+++
T Consensus 126 ~~L~~~G~aY~~~~g~v~f~~~~~~~yg~lsg~~~~~l~~g~rv~~~~~k~~p~Df~lwk~~~~g~~~w~s~WG~g~PgW 205 (461)
T 1li5_A 126 EQLIAKGHAYVADNGDVMFDVPTDPTYGVLSRQDLDQLQAGARVDVVDDKRNPMDFVLWKMSKEGEPSWPSPWGAGRPGW 205 (461)
T ss_dssp HHHHHTTSEEECTTSCEEECGGGCTTTTTTTTC----------------CCSTTCEEEEEECCTTSCCBCCTTCSEEECS
T ss_pred HHHHHCCCEEEecCCCEEEecccccccccccCCCHHHhhcCCcccchhcccCccceEEEccCCCCCCcccCCCCCcCCCc
Confidence 999999999998 9999997531 1148899987 7888887642
Q ss_pred -HHH--HHHHHhhcCCceEEEEeeCcccchHHH---HHHHHHH-cCCCCCCCCCCCceEEEEeEEEECCCCcceeeecCC
Q 010356 283 -LAA--LWYRLNEEKAEWIIYVTDVGQQLHFDM---VFSAAKR-AGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSE 355 (512)
Q Consensus 283 -iA~--~~~k~~~~~~d~~iyV~g~~q~~hf~~---l~~~~~~-~g~~~~~~~~~~~~~Hv~~g~V~~~~g~kmSkR~G~ 355 (512)
+++ ..+++ ++.. ++|++.+.+..|++ ..+.+.+ +|. +++..|.|. |+|+. +|+|||||+||
T Consensus 206 hiecsam~~~~--lg~~--~dih~gG~Dl~fpH~~~~~aq~~a~~g~-----~~~~~~~h~--g~v~~-~G~KMSKS~GN 273 (461)
T 1li5_A 206 HIECSAMNCKQ--LGNH--FDIHGGGSDLMFPHHENEIAQSTCAHDG-----QYVNYWMHS--GMVMV-DREKMSKSLGN 273 (461)
T ss_dssp SHHHHHHHHHH--HCSS--EEEEECBGGGTTTHHHHHHHHHHHHSSS-----CCEEEECCB--CCEEE-TTBCCCGGGTC
T ss_pred cchhHHHHHHH--hCCC--ceEEeccCccCchHHHHHHHHHHHhcCC-----CCCcEEEEe--eEEEE-CCeEccccCCC
Confidence 111 12222 3333 45564444443332 2233344 476 456778887 77774 79999999999
Q ss_pred eecHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhchhhHHHHhhccCCCCCccccccccccccCCchHHHHHHH
Q 010356 356 VVRLVDLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNRLTNYTFSFDQMLNDKGNTAVYLLYAH 435 (512)
Q Consensus 356 ~v~l~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~airy~~L~~~~~~~~~Fd~~~~~~~~~~~g~ylqY~~ 435 (512)
+|++.|++++ +|++++|||+|+.++.++++|+++.+.+. ++++
T Consensus 274 ~v~~~dll~~-----------------------------~g~dalR~~ll~~~~~~~~~fs~~~l~~~--------~~~l 316 (461)
T 1li5_A 274 FFTVRDVLKY-----------------------------YDAETVRYFLMSGHYRSQLNYSEENLKQA--------RAAL 316 (461)
T ss_dssp CCBHHHHHTT-----------------------------SCHHHHHHHHHSSCTTSCEEECHHHHHHH--------HHHH
T ss_pred ccChhHHhhh-----------------------------CCHHHHHHHHHcCCcCCCCCCCHHHHHHH--------HHHH
Confidence 9999999997 89999999999998999999999988764 5678
Q ss_pred HHHHHHHHhhcCChhhhhhcCCCCCCCHHHHHHHHHHHhhHHHHHHHH-HhcChHHHHHHHHHHHHHHhcchhc
Q 010356 436 ARICSIIRKSGKDIEELKKTGSLVLDHADERALGLHLLHFSEVIEEAL-TNLLPNVVCEYLYNLSEYFTRFYSN 508 (512)
Q Consensus 436 aR~~sil~k~~~~~~~~~~~~~~~l~~~~e~~L~~~l~~~~~~v~~a~-~~~~p~~l~~yl~~La~~fn~fY~~ 508 (512)
.|+.+++++.... + .. + .+..+++.+.+|+ ++++++.++.+|++|+..+|+||++
T Consensus 317 ~rl~n~~~~~~~~---~--------~~--d-----~l~~~~~~~~~am~dd~n~~~Al~~l~~l~~~~N~~~~~ 372 (461)
T 1li5_A 317 ERLYTALRGTDKT---V--------AP--A-----GGEAFEARFIEAMDDDFNTPEAYSVLFDMAREVNRLKAE 372 (461)
T ss_dssp HHHHHHHTTCCTT---S--------CC--C-----SCHHHHHHHHHHHHBTSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcC---C--------CH--H-----HHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999765311 0 01 1 3556888899999 8999999999999999999999863
No 6
>4dlp_A Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA synthetase, class IA:methionyl-tRNA...; structural genomics; 2.65A {Brucella melitensis biovar abortus 230ORGANISM_TAXID}
Probab=100.00 E-value=5.2e-41 Score=363.80 Aligned_cols=329 Identities=13% Similarity=0.114 Sum_probs=240.1
Q ss_pred CceEEEEeeCCCCCCCCcccchhhhhHHHHHHHHHHHCCCeEEEeeccCccchHHHHHHHHHHhhCCCCCccCcccHHHH
Q 010356 84 VKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGEL 163 (512)
Q Consensus 84 ~~~v~Ve~~spNp~~~lHvGH~R~~iiGD~lar~l~~~G~~V~~~~~i~D~G~qi~~l~~~~~~~~~~~~~~~~~~i~~l 163 (512)
++++.|....|+|||++||||+|++++||+|+|++|++||+|.++++++|+|.||...+...
T Consensus 24 ~~~~~i~~p~pypng~lHiGH~r~~v~~D~laR~lr~~G~~V~~~~g~dd~g~ki~~~a~~~------------------ 85 (536)
T 4dlp_A 24 REKYYITTAIAYPNGKPHIGHAYELIATDAMARFQRLNGMDVYFLTGTDEHGIKMLQSARKE------------------ 85 (536)
T ss_dssp CCEEEEEECCBCCSSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCCSHHHHHHHHHH------------------
T ss_pred CCCEEEeCCCCCCCCCcCcchhHHHHHHHHHHHHHHhcCCcEEEecCcCCcchHHHHHHHHc------------------
Confidence 45788888888999999999999999999999999999999999999999999876432110
Q ss_pred HHHHHHHhcccCCChHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHcCCeEe-eecc--ccccCchHHHH
Q 010356 164 QEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLE-EKGE--SFYNPYIPGVI 240 (512)
Q Consensus 164 ~~~y~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~L~I~f~-~~~e--s~~~~~v~~~~ 240 (512)
+.+ ++++++.+.+.|++++++|||++| +..+ ..|.+.+++++
T Consensus 86 -----------g~~------------------------~~~~~~~~~~~~~~~l~~lgi~~d~~~~t~~~~~~~~v~~~~ 130 (536)
T 4dlp_A 86 -----------GIT------------------------PRDLADRNTSAFRRMAEVLNSSNDDYIRTSEERHYKASQAIW 130 (536)
T ss_dssp -----------TSC------------------------HHHHHHHHHHHHHHHHHHTTCCCSEEEETTSHHHHHHHHHHH
T ss_pred -----------CCC------------------------HHHHHHHHHHHHHHHHHHcCCCCCcceeCCCHHHHHHHHHHH
Confidence 111 245788889999999999999996 4333 35788999999
Q ss_pred HHHHhCCCeeeeCceEEEEec------------C----------------------------------------------
Q 010356 241 DELSKQGLVEESQGARVIFIE------------G---------------------------------------------- 262 (512)
Q Consensus 241 ~~L~~~g~~~~~dGa~~~~~~------------g---------------------------------------------- 262 (512)
++|.++|++|+.++.+|+... |
T Consensus 131 ~~L~~~G~iY~~~~~~~~~~~~~~~l~~~~~~~~~~g~~c~~~g~~~e~~~~~~~f~~l~~~~~~l~~~~~~~~~~i~P~ 210 (536)
T 4dlp_A 131 QAMVANGDIYKGGYAGWYSVRDEAYYGEEETEVRADGVRYGPQGTPVEWVEEESYFFRLSAYQDKLLDLYENNPGFIMPA 210 (536)
T ss_dssp HHHHHTTCEEEEEEEEEEETTTTEEECGGGCEECTTSCEECTTSSBCEEEEEEEEEECGGGGHHHHHHHHHHCTTSEESH
T ss_pred HHHHHCCCEEEeceeeeecCCcCcccCHHHhhcCCCCCcccCCCCcceEEeccceEEecHHHHHHHHHHHHhCCCccCcH
Confidence 999999999998777665331 0
Q ss_pred ------------CCCCeEEEecC-----------Cccccccch--HHHHH---H-----HHh-hcCCceEEEEeeCcccc
Q 010356 263 ------------VNIPLIIVKSD-----------GGFNYASTD--LAALW---Y-----RLN-EEKAEWIIYVTDVGQQL 308 (512)
Q Consensus 263 ------------~~~d~vl~ksD-----------G~~~Y~~~D--iA~~~---~-----k~~-~~~~d~~iyV~g~~q~~ 308 (512)
...|..|.|++ +...|+.-| ++|.- | +++ .|+.| ++|+|.||..
T Consensus 211 ~~~~~~~~~l~~~l~D~~ISR~~~~WGipiP~~~~~v~yvWfda~~~y~s~~~~~~~~~~~~~~~p~d--v~~~G~D~~~ 288 (536)
T 4dlp_A 211 ERRNEIVSFVKSGLKDLSISRTTFDWGIPVPGDEKHVMYVWVDALTNYITALGYPDTTDERWAYWPAN--AHIIGKDISR 288 (536)
T ss_dssp HHHHHHHHHHHTCCCCEECEEC--CCSCBCTTCTTSEECHHHHHHHHHHHTTTTTCTTSGGGGGCSCS--EEEEEGGGHH
T ss_pred HHHHHHHHHHhcCCCccCCccCCCcCCeeCCCCCCCceEEeeCCcHHHHHhcCCCCCchHHHhhCCcc--eEEeechHHH
Confidence 01344555542 223333323 33321 1 111 13444 8899999976
Q ss_pred hHHHHH--HHHHHcCCCCCCCCCCCceEEEEeEEEECCCCcceeeecCCeecHHHHHHHHHHHHHHHHHHhcCCCCCCHH
Q 010356 309 HFDMVF--SAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAKNRSKAVLIERGKDKEWTEE 386 (512)
Q Consensus 309 hf~~l~--~~~~~~g~~~~~~~~~~~~~Hv~~g~V~~~~g~kmSkR~G~~v~l~dll~~~~~~~~~~~~~~~~~~~~~~~ 386 (512)
|..++ +.+.++|+.+ ...+. .+|+|+. +|+|||||+||+|++.|++++
T Consensus 289 -fh~~~~~a~l~a~g~~~-----~~~v~--~hg~v~~-~G~KMSKS~GNvi~p~d~i~~--------------------- 338 (536)
T 4dlp_A 289 -FHAVYWPAFLMSAQLPL-----PKRVF--AHGFLFN-RGEKMSKSVGNVIDPFELVER--------------------- 338 (536)
T ss_dssp -HHHTHHHHHHHHTTCCC-----CSCEE--EECCEEC-------------CCHHHHHHH---------------------
T ss_pred -HHHHHHHHHHHHCCCCC-----CcEEE--eeeeEee-CCceecccCCCCCCHHHHHHH---------------------
Confidence 44433 5667788742 23332 3488885 899999999999999999998
Q ss_pred HHHHHHHhhchhhHHHHhhc-cCCCCCccccccccccc-cCCchHHHHHHHHHHHHHHHhhcCChhhhhhcCCCCCCCHH
Q 010356 387 ELEQTAEAVGYGAAKYFDLK-NNRLTNYTFSFDQMLND-KGNTAVYLLYAHARICSIIRKSGKDIEELKKTGSLVLDHAD 464 (512)
Q Consensus 387 ~~~~~a~~~~~~airy~~L~-~~~~~~~~Fd~~~~~~~-~~~~g~ylqY~~aR~~sil~k~~~~~~~~~~~~~~~l~~~~ 464 (512)
+|+|++||++++ ....++++||++.+.+. +.+....++|+++|+++++.+...+. ++. ....++.
T Consensus 339 --------~GaDalR~~ll~~~~~~~d~~fs~~~~~~~~n~~l~~~l~N~~~R~~~~~~~~~~~~--~p~---~~~~~~~ 405 (536)
T 4dlp_A 339 --------YGLDQLRYFLMREVPFGQDGSYSHEAIVNRTNADLANDLGNLAQRSLSMIAKNCEGK--VPQ---PGAFSEA 405 (536)
T ss_dssp --------HCHHHHHHHHHHHSCTTSCEECCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHSTTB--CCC---CCCCCHH
T ss_pred --------cCcHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC--CCC---cccCCHH
Confidence 799999999999 57789999999999773 55666789999999999998865332 111 1123678
Q ss_pred HHHHHHHHHhhHHHHHHHHHhcChHHHHHHHHHHHHHHhcchhccc
Q 010356 465 ERALGLHLLHFSEVIEEALTNLLPNVVCEYLYNLSEYFTRFYSNCQ 510 (512)
Q Consensus 465 e~~L~~~l~~~~~~v~~a~~~~~p~~l~~yl~~La~~fn~fY~~~~ 510 (512)
++.|+..+.++++.+.+++++++|+.+++++++++..+|.||+.++
T Consensus 406 d~~ll~~l~~~~~~v~~a~~~~~~~~a~~~l~~l~~~~n~Y~~~~k 451 (536)
T 4dlp_A 406 DKAILDQADAALETARKAMDDQALHLALGAIFAVVAEANRYFAGQE 451 (536)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhCC
Confidence 8999999999999999999999999999999999999999998775
No 7
>3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase, tRNA ligase metrs, methionine, translation, ATP-binding; HET: ME8; 2.00A {Leishmania major}
Probab=100.00 E-value=2.4e-41 Score=367.91 Aligned_cols=330 Identities=15% Similarity=0.137 Sum_probs=250.0
Q ss_pred CCCceEEEEeeCCCCCCCCcccchhhhhHHHHHHHHHHHCCCeEEEeeccCccchHHHHHHHHHHhhCCCCCccCcccHH
Q 010356 82 LRVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIG 161 (512)
Q Consensus 82 ~~~~~v~Ve~~spNp~~~lHvGH~R~~iiGD~lar~l~~~G~~V~~~~~i~D~G~qi~~l~~~~~~~~~~~~~~~~~~i~ 161 (512)
..++++.|...+|||||++||||+|++++||+|||++|++||+|.++++++|+|.+|...+..
T Consensus 23 ~~~~~~~i~~~~py~ng~lHiGH~r~~v~~D~laR~~r~~G~~V~~~~g~dd~G~ki~~~a~~----------------- 85 (564)
T 3kfl_A 23 KKQKVFFATTPIYYVNASPHIGHVYSTLIVDVLGRYHRVKGEEVFVMTGTDEHGQKVAEAAAK----------------- 85 (564)
T ss_dssp -CCCCEEEEEEEEECSSCCCHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEECCSHHHHHHHHH-----------------
T ss_pred cCCCCEEEeCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCcEEEecCcCCCCcHHHHHHHH-----------------
Confidence 346789999999999999999999999999999999999999999999999999988643211
Q ss_pred HHHHHHHHHhcccCCChHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHcCCeEeee-cc--ccccCchHH
Q 010356 162 ELQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEK-GE--SFYNPYIPG 238 (512)
Q Consensus 162 ~l~~~y~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~L~I~f~~~-~e--s~~~~~v~~ 238 (512)
.+.+| +++++.+.+.|++++++|||+||.+ .. ..|.+.+++
T Consensus 86 ------------~g~~p------------------------~~~~~~~~~~~~~~~~~lgi~~D~~~~t~~~~~~~~v~~ 129 (564)
T 3kfl_A 86 ------------QGVSP------------------------MDFTTSVSSEFKQCFQEMNYDMNYFIRTTNPTHEKLVQD 129 (564)
T ss_dssp ------------TTCCH------------------------HHHHHHHHHHHHHHHHHTTCCCSEEEETTSHHHHHHHHH
T ss_pred ------------cCCCH------------------------HHHHHHHHHHHHHHHHHcCCCCCccccCCCHHHHHHHHH
Confidence 01121 4578888999999999999999743 33 467889999
Q ss_pred HHHHHHhCCCeeeeCceEEEEec------------C--------------------------------------------
Q 010356 239 VIDELSKQGLVEESQGARVIFIE------------G-------------------------------------------- 262 (512)
Q Consensus 239 ~~~~L~~~g~~~~~dGa~~~~~~------------g-------------------------------------------- 262 (512)
++++|.++|++|+.++.+|+... |
T Consensus 130 ~~~~L~~~G~iy~~~~~~~y~~~~~~~l~~~~~~~~~~~~g~~c~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~ 209 (564)
T 3kfl_A 130 IWKKLAAKGDIYLGKYEGWYSVSDESFLTAQNVADGVDRDGKPCKVSLESGHVVTWVEEENYMFRLSAFRERLLKYFHDH 209 (564)
T ss_dssp HHHHHHHHTCEEEEEEEEEEETTTTEEECGGGEEEEECTTSCEEEEETTTSCBCEEEEEEEEEECGGGGHHHHHHHHHHC
T ss_pred HHHHHHHCCCEEEeeeeEEecCCcCCCCCHHHhccCcCCCCCEeccccCCCCccEEEecceeEEEHHHHHHHHHHHHHhC
Confidence 99999999999987655544211 0
Q ss_pred -------------------CCCCeEEEe---c-----------CCccccccch-----HHHHHH---H---------H--
Q 010356 263 -------------------VNIPLIIVK---S-----------DGGFNYASTD-----LAALWY---R---------L-- 290 (512)
Q Consensus 263 -------------------~~~d~vl~k---s-----------DG~~~Y~~~D-----iA~~~~---k---------~-- 290 (512)
.-.|..|.| + ++...|+.-| ++..-| + +
T Consensus 210 ~~~i~P~~~~~~~~~wl~~gl~D~~ISR~~~~~~~WGipiP~~~~~v~yVWfDa~~~y~s~~~~~~~~~~~~~~~~~~~~ 289 (564)
T 3kfl_A 210 PNCIVPEFRRREVIKTVEKGLFDLSISRKRESVMNWSIPVPGDERHCIYVWLDALFNYYTGALTRVATDGTETLDEDHHA 289 (564)
T ss_dssp TTSEESHHHHHHHHHHHHHCCCCEECEEEGGGGTTCSCEETTEEEEEECHHHHHHTHHHHHHHEEECTTSCEEECSSSTT
T ss_pred CCccCCHHHHHHHHHHHhCCCCCccccCcCCCCCCCCeecCCCCCCEEEEeccCcHHHHHHhCccccccccccchhcchh
Confidence 002233333 1 1222333333 121111 0 1
Q ss_pred h-hcCCceEEEEeeCcccchHHHHH--HHHHHcCCCCCCCCCCCceEEEEeEEEECCCCcceeeecCCeecHHHHHHHHH
Q 010356 291 N-EEKAEWIIYVTDVGQQLHFDMVF--SAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAK 367 (512)
Q Consensus 291 ~-~~~~d~~iyV~g~~q~~hf~~l~--~~~~~~g~~~~~~~~~~~~~Hv~~g~V~~~~g~kmSkR~G~~v~l~dll~~~~ 367 (512)
+ .|+.| ++++|.||.. |..++ +.+.++|+.+ ...+. .+|+|. .+|+|||||+||+|++.|++++
T Consensus 290 ~~~wp~d--v~~~GkDii~-FH~~~wpa~L~a~g~~~-----~~~v~--~hg~v~-~~G~KMSKS~GNvV~p~d~i~~-- 356 (564)
T 3kfl_A 290 LNRWPAD--VHVVGKDILK-FHAIYWPAFLMSAELPL-----PERLV--SHGWWT-KDHKKISKSLGNAFDPVEKAKE-- 356 (564)
T ss_dssp TTCCSCS--EEEEEGGGHH-HHHTHHHHHHHHTTCCC-----CSCEE--EECCEE-ETTEECCTTTTCCCCHHHHHHH--
T ss_pred hhcCccc--eEEEeecccc-hHHHHHHHHHHhCCCCC-----CcEEE--EcccEe-eCCccccccCCCCCCHHHHHHH--
Confidence 1 12333 8899999987 44433 6677889842 23333 458885 7899999999999999999998
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHhhchhhHHHHhhc-cCCCCCcccccccccc-ccCCchHHHHHHHHHHHHHHHhh
Q 010356 368 NRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLK-NNRLTNYTFSFDQMLN-DKGNTAVYLLYAHARICSIIRKS 445 (512)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~airy~~L~-~~~~~~~~Fd~~~~~~-~~~~~g~ylqY~~aR~~sil~k~ 445 (512)
+|+|++|||+++ ....+|++||++.+.+ .+++..++++|+++|+++++.+.
T Consensus 357 ---------------------------~G~DalR~~ll~~~~~~~D~~fs~~~~~~~~n~~l~~~l~N~~~R~~~~~~~~ 409 (564)
T 3kfl_A 357 ---------------------------FGIDALKYFLMRESNFQDDGDYSDKNMVARLNGELADTLGNLVSRCVAPKINV 409 (564)
T ss_dssp ---------------------------HCHHHHHHHHHHHCCSSCCEECCHHHHHHHHHHTTTTTHHHHHHHHHCTTTST
T ss_pred ---------------------------cCcHHHHHHHHHcCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 799999999999 6778999999999987 57788899999999999988732
Q ss_pred cCChhhhhhcCCCCCCCHHHHHHHHHHHhhHHHHHHHHHhcChHHHHHHHHHHHHHHhcchhccc
Q 010356 446 GKDIEELKKTGSLVLDHADERALGLHLLHFSEVIEEALTNLLPNVVCEYLYNLSEYFTRFYSNCQ 510 (512)
Q Consensus 446 ~~~~~~~~~~~~~~l~~~~e~~L~~~l~~~~~~v~~a~~~~~p~~l~~yl~~La~~fn~fY~~~~ 510 (512)
. +. ++. ... .++.+++|+..+.++++.+.+++++++|+.+++++++|+..+|+||+.++
T Consensus 410 ~-g~--~p~--~~~-~~~~d~~ll~~l~~~~~~v~~a~e~~~~~~a~~~i~~l~~~~n~Y~~~~k 468 (564)
T 3kfl_A 410 N-GM--WPE--PAE-YSESDKTLIASLNNLAGTVDHYYCLPDIQHALIAIFDVLRSLNAYVTENA 468 (564)
T ss_dssp T-SB--CCC--CCC-CCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred C-Cc--CCC--CCC-CCHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHhcC
Confidence 2 21 111 112 35778899999999999999999999999999999999999999998765
No 8
>2csx_A Methionyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase/RNA complex; 2.70A {Aquifex aeolicus} PDB: 2ct8_A*
Probab=100.00 E-value=7.1e-39 Score=344.28 Aligned_cols=324 Identities=17% Similarity=0.181 Sum_probs=238.8
Q ss_pred CceEEEEeeCCCCCCCCcccchhhhhHHHHHHHHHHHCCCeEEEeeccCccchHHHHHHHHHHhhCCCCCccCcccHHHH
Q 010356 84 VKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGEL 163 (512)
Q Consensus 84 ~~~v~Ve~~spNp~~~lHvGH~R~~iiGD~lar~l~~~G~~V~~~~~i~D~G~qi~~l~~~~~~~~~~~~~~~~~~i~~l 163 (512)
.+++.|...+|||||++||||+|+++++|+++|++++.||+|.++..++|+|.+|..-+
T Consensus 4 ~~~~~i~~p~py~ng~lHiGH~~~~~~~D~~~R~~r~~G~~V~~~~g~D~~G~~i~~~a--------------------- 62 (497)
T 2csx_A 4 MKKFYVTTPIYYVNDVPHLGHAYTTIAADTIARYYRLRDYDVFFLTGTDEHGLKIQKKA--------------------- 62 (497)
T ss_dssp SCEEEEEEEEEETTSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEECCSHHHHTHH---------------------
T ss_pred CCcEEEecCCCCCCCccchhhHHHHHHHHHHHHHHHhcCCceeeecccCCCcHHHHHHH---------------------
Confidence 46799999999999999999999999999999999999999999999999887664211
Q ss_pred HHHHHHHhcccCCChHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHcCCeEeee---ccccccCchHHHH
Q 010356 164 QEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEK---GESFYNPYIPGVI 240 (512)
Q Consensus 164 ~~~y~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~L~I~f~~~---~es~~~~~v~~~~ 240 (512)
.+. +.+ ++++++.+.+.|++++++|||.+|++ +++.|.+.+++++
T Consensus 63 -------~~~-g~~------------------------~~~~~~~~~~~~~~~~~~lgi~~d~~~~t~~~~~~~~~~~~~ 110 (497)
T 2csx_A 63 -------EEL-GIS------------------------PKELVDRNAERFKKLWEFLKIEYTKFIRTTDPYHVKFVQKVF 110 (497)
T ss_dssp -------HHS-SSC------------------------HHHHHHHHHHHHHHHHHHTTCCCSEEEETTSHHHHHHHHHHH
T ss_pred -------HHc-CCC------------------------HHHHHHHHHHHHHHHHHHhCCcCCCCccCCCHHHHHHHHHHH
Confidence 110 111 13568889999999999999999743 2344888999999
Q ss_pred HHHHhCCCeeee--CceEEEEecC-----------------C--------------------------------------
Q 010356 241 DELSKQGLVEES--QGARVIFIEG-----------------V-------------------------------------- 263 (512)
Q Consensus 241 ~~L~~~g~~~~~--dGa~~~~~~g-----------------~-------------------------------------- 263 (512)
++|.++|++|+. .|.+|+.++. .
T Consensus 111 ~~L~~~G~iY~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~wf~~l~~~~~~l~~~~~~~~~~~~p~~~~ 190 (497)
T 2csx_A 111 EECYKRGDIYLGEYEGWYCVGCEEFKSEAELAEDHTCPIHQKKCEYIKEPSYFFRLSKYQDKLLELYEKNPEFIQPDYRR 190 (497)
T ss_dssp HHHHHTTCEEEEEC---------------------------------CCEEEEECTTSSHHHHHHHHHHCTTSBCSHHHH
T ss_pred HHHHHCCCEEecceeeccCcccCeEccHHHhccCCCCCCCCCCCeEEecCceEEEcHHHHHHHHHHHHhCCCeeCcHHHH
Confidence 999999999976 5666654320 0
Q ss_pred ----------CCCeEEEe--cC---Cccccc--------cch-----HHHHHHH-HhhcCCceEEEEeeCcccchHHHHH
Q 010356 264 ----------NIPLIIVK--SD---GGFNYA--------STD-----LAALWYR-LNEEKAEWIIYVTDVGQQLHFDMVF 314 (512)
Q Consensus 264 ----------~~d~vl~k--sD---G~~~Y~--------~~D-----iA~~~~k-~~~~~~d~~iyV~g~~q~~hf~~l~ 314 (512)
-.|..+.| .+ |.+... .-| ++..... ...+++| +++.|.||.. |..++
T Consensus 191 ~~~~~~l~~~~~Dw~isR~~~~~~WG~~iP~~~~~~i~vW~ds~~~~~s~~~~~~~~~~p~d--i~~~G~D~~~-~H~~~ 267 (497)
T 2csx_A 191 NEIISFVKQGLKDLSVTRPRSRVKWGIPVPFDPEHTIYVWFDALFNYISALEDKVEIYWPAD--LHLVGKDILR-FHTVY 267 (497)
T ss_dssp HHHHHHHHHCCCCEECEEETTTCCSSEEETTEEEEEECSHHHHHTHHHHTTTTTHHHHCSCS--CEEEEGGGHH-HHHTH
T ss_pred HHHHHHHhcCCccccccccCCCCCCceecCCCCCceEEEecccchhhcccCCCcchhhCCce--EEEeecchhH-hHHHH
Confidence 01333333 22 332221 001 0000000 0124555 7789999866 22222
Q ss_pred --HHHHHcCCCCCCCCCCCceEEEEeEEEECCCCcceeeecCCeecHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHH
Q 010356 315 --SAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAKNRSKAVLIERGKDKEWTEEELEQTA 392 (512)
Q Consensus 315 --~~~~~~g~~~~~~~~~~~~~Hv~~g~V~~~~g~kmSkR~G~~v~l~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 392 (512)
+.+.++|+. +...+.|. |+|+. +|+|||||+||+|++.|++++
T Consensus 268 ~~a~l~~~g~~-----~~~~~~~~--G~v~~-~G~KMSKS~GN~i~~~dli~~--------------------------- 312 (497)
T 2csx_A 268 WPAFLMSLGYE-----LPKKVFAH--GWWTV-EGKKMSKTLGNVVDPYEVVQE--------------------------- 312 (497)
T ss_dssp HHHHHHHHTCC-----CCSCEEEE--CCEES-SSSBCCTTTTCCCCHHHHHHH---------------------------
T ss_pred HHHHHHHcCCC-----CCcEEEEC--cEEEe-CCceeCCcCCCCCCHHHHHHH---------------------------
Confidence 556777874 34667776 88886 899999999999999999998
Q ss_pred HhhchhhHHHHhhc-cCCCCCcccccccccccc-CCchHHHHHHHHHHHHHHHhhcCChhhhhhcCCCCCCCHHHHHHHH
Q 010356 393 EAVGYGAAKYFDLK-NNRLTNYTFSFDQMLNDK-GNTAVYLLYAHARICSIIRKSGKDIEELKKTGSLVLDHADERALGL 470 (512)
Q Consensus 393 ~~~~~~airy~~L~-~~~~~~~~Fd~~~~~~~~-~~~g~ylqY~~aR~~sil~k~~~~~~~~~~~~~~~l~~~~e~~L~~ 470 (512)
+|+|++||++++ .++.++++||++.+.... .+..++++|+++|++++++++..+. ++ ++.++.|+.
T Consensus 313 --~g~DalR~~ll~~~~~~~d~~fs~~~l~~~~~~~l~~~l~n~~~R~~~~~~~~~~~~--~~--------~~~d~~l~~ 380 (497)
T 2csx_A 313 --YGLDEVRYFLLREVPFGQDGDFSKKAILNRINGELANEIGNLYSRVVNMAHKFLGGE--VS--------GARDEEYAK 380 (497)
T ss_dssp --HCHHHHHHHHHHSSCTTSCEECCHHHHHHHHHHTCCCCCHHHHHHHHHHHHHHSTTC--BC--------CCCCTTHHH
T ss_pred --CCcHHHHHHHHhcCCcccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--CC--------chhHHHHHH
Confidence 799999999998 678999999999998754 4556899999999999998864211 10 233567899
Q ss_pred HHHhhHHHHHHHHHhcChHHHHHHHHHHHHHHhcchhccc
Q 010356 471 HLLHFSEVIEEALTNLLPNVVCEYLYNLSEYFTRFYSNCQ 510 (512)
Q Consensus 471 ~l~~~~~~v~~a~~~~~p~~l~~yl~~La~~fn~fY~~~~ 510 (512)
.+..+++.+.+++++++|+.++.++++++..+|.|++.++
T Consensus 381 ~l~~~~~~v~~~~~~~~~~~a~~~l~~l~~~~n~y~~~~k 420 (497)
T 2csx_A 381 IAQESIKNYENYMEKVNFYKAIEEILKFTSYLNKYVDEKQ 420 (497)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999998653
No 9
>3tqo_A Cysteinyl-tRNA synthetase; protein synthesis, ligase; 2.30A {Coxiella burnetii}
Probab=100.00 E-value=4.1e-38 Score=330.52 Aligned_cols=307 Identities=18% Similarity=0.191 Sum_probs=231.0
Q ss_pred CCceEEEEeeCCCCCCCCcccchhhhhHHHHHHHHHHHCCCeEEEeeccCccchHHHHHHHHHHhhCCCCCccCcccHHH
Q 010356 83 RVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGE 162 (512)
Q Consensus 83 ~~~~v~Ve~~spNp~~~lHvGH~R~~iiGD~lar~l~~~G~~V~~~~~i~D~G~qi~~l~~~~~~~~~~~~~~~~~~i~~ 162 (512)
.+++|.++.|+|||++++||||+|++|++|+|+|+|++.||+|.++.+++|+|.+|-
T Consensus 22 ~~~~v~~YvcGPtvy~~~HIGHaR~~v~~Dvl~R~lr~~Gy~V~~v~n~dD~ddKIi----------------------- 78 (462)
T 3tqo_A 22 ESGKVKLYVCGMTVYDYMHIGHGRSWIIFDMVVRYLRMRGYEVTFVRNITDIDDKII----------------------- 78 (462)
T ss_dssp STTEEEEEECCCBTTSCCBHHHHHHHHHHHHHHHHHHHTTCEEEEEECBBCCCHHHH-----------------------
T ss_pred CCCeEEEEeCCCcCCCCCchhhhHHHHHHHHHHHHHHHcCCceEEecCcCCCCcHHH-----------------------
Confidence 467899999999999999999999999999999999999999999999999876543
Q ss_pred HHHHHHHHhcccCCChHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHcCCeEe-ee-ccccccCchHHHH
Q 010356 163 LQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLE-EK-GESFYNPYIPGVI 240 (512)
Q Consensus 163 l~~~y~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~L~I~f~-~~-~es~~~~~v~~~~ 240 (512)
.++.+. | ..|+++++.+.+.|++++++|||.++ +. ..+.|.+.+.+++
T Consensus 79 -----~~A~~~--------------------g-----~~~~e~a~~~~~~f~~d~~~LgI~~d~~~praTe~i~~i~~~i 128 (462)
T 3tqo_A 79 -----KRAGEN--------------------K-----ESPAALAERFIQILHEDEKALRVLSPDQEPRATQYVPEIIKLI 128 (462)
T ss_dssp -----HHHHHT--------------------T-----SCHHHHHHHHHHHHHHHHHHHTCCCCSBCCBGGGCHHHHHHHH
T ss_pred -----HHHHHc--------------------C-----CCHHHHHHHHHHHHHHHHHHcCCCCCccccChhhHHHHHHHHH
Confidence 222211 1 12578899999999999999999994 44 4688889999999
Q ss_pred HHHHhCCCeeee-CceEEEEec-----C-----------------------CCCCeEEEec--CCccccccch----HHH
Q 010356 241 DELSKQGLVEES-QGARVIFIE-----G-----------------------VNIPLIIVKS--DGGFNYASTD----LAA 285 (512)
Q Consensus 241 ~~L~~~g~~~~~-dGa~~~~~~-----g-----------------------~~~d~vl~ks--DG~~~Y~~~D----iA~ 285 (512)
++|.++|++|+. +|.+||+++ | +..|++|||. +|.|.|.+++ .+|
T Consensus 129 ~~L~ekG~aY~~~~g~Vyfdv~~~~~yg~Ls~~~~~~~~~g~r~~~~~~K~~p~DF~LWK~~k~~ep~W~spwG~GrPGW 208 (462)
T 3tqo_A 129 QKLLDNQYAYTGQNGDVFFDVRRFKDYGKLSHRHLDELQAGARVEVSDSKRDPLDFVLWKKAKPGEPKWDSPWGEGRPGW 208 (462)
T ss_dssp HHHHHHTSEEECTTSCEEECTTTCTTTTTTTTCSCC------------CCSSTTCEEEEEECCTTSCCBCCTTCSEEECH
T ss_pred HHHHHCCCEEEecCCcEEeccccccccccccCCChHHhhccCccccccccCCccccceeeecCCCCCcccCCCCCCCCCC
Confidence 999999999998 799999764 1 1248899986 7889888875 456
Q ss_pred HHHHHh--hcCCceEEEEeeCcccchHHHHH---HHHHH-cCCCCCCCCCCCceEEEEeEEEECCCCcceeeecCCeecH
Q 010356 286 LWYRLN--EEKAEWIIYVTDVGQQLHFDMVF---SAAKR-AGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRL 359 (512)
Q Consensus 286 ~~~k~~--~~~~d~~iyV~g~~q~~hf~~l~---~~~~~-~g~~~~~~~~~~~~~Hv~~g~V~~~~g~kmSkR~G~~v~l 359 (512)
|+.+.. .......++|+|+++++.|+++. +..++ .|. +++..|+|. |+|. .+|+|||||+||+|++
T Consensus 209 HiEcsam~~~~lG~~~dih~gG~Dl~FpHheneiaqs~a~~g~-----p~~~~w~H~--g~v~-~~G~KMSKSlGN~i~~ 280 (462)
T 3tqo_A 209 HIECSAMSSSILGQPFDIHGGGLDLKFPHHENEIAQSEAGEEK-----PFVKLWMHA--GLLE-INKEKMSKSLGNIISI 280 (462)
T ss_dssp HHHHHHHHHHHHCSSEEEEEEEGGGTTTHHHHHHHHHHHHHSS-----CCEEEEEEE--CCEE-ETTEECCTTTTCCCBH
T ss_pred ceehHHHHHHhcCCCeEEEccccccccHHHHhHHHHHHHHcCC-----CcceEEEEc--cEEe-cCCcCccccCCCcccH
Confidence 665421 11112347899999998887643 22333 354 578889997 7777 5899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhchhhHHHHhhccCCCCCccccccccccccCCchHHHHHHHHHHH
Q 010356 360 VDLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNRLTNYTFSFDQMLNDKGNTAVYLLYAHARIC 439 (512)
Q Consensus 360 ~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~airy~~L~~~~~~~~~Fd~~~~~~~~~~~g~ylqY~~aR~~ 439 (512)
.|++++ +|++++||++|+.+++++++|+++.+.+.. -.+.|+.
T Consensus 281 ~dll~~-----------------------------~g~dalR~~lls~~yr~~l~fs~~~l~~a~--------~~l~rl~ 323 (462)
T 3tqo_A 281 REALKE-----------------------------SDVEVLRYFLLSGHYRNPLSYSKENLENGR--------LALERFY 323 (462)
T ss_dssp HHHHHH-----------------------------SCHHHHHHHHHHSCTTSCEEECHHHHHHHH--------HHHHHHH
T ss_pred HHHHhh-----------------------------cChHHhhhhhccCCCCCCcCcCHHHHHHHH--------HHHHHHH
Confidence 999998 899999999999999999999999876532 2345665
Q ss_pred HHHHhhcCChhhhhhcCCCCCCCHHHHHHHHHHHhhHHHHHHHHH-hcChHHHHHHHHHHHHHHhcch
Q 010356 440 SIIRKSGKDIEELKKTGSLVLDHADERALGLHLLHFSEVIEEALT-NLLPNVVCEYLYNLSEYFTRFY 506 (512)
Q Consensus 440 sil~k~~~~~~~~~~~~~~~l~~~~e~~L~~~l~~~~~~v~~a~~-~~~p~~l~~yl~~La~~fn~fY 506 (512)
+.++..... .+. .+..+.+.+.+|++ .++...++..|++++...|+..
T Consensus 324 ~~~~~~~~~-------------~~~------~~~~~~~~~~~a~~dD~nt~~a~~~l~~~~~~~n~~~ 372 (462)
T 3tqo_A 324 LALRGLPVV-------------NHE------KTSSYTDRFYEAMDDDFNTPIAFALLFEMVREINRFR 372 (462)
T ss_dssp HHHTTCCC-------------------------CHHHHHHHHHHTBTCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhc-------------cch------hHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHhhhh
Confidence 555433210 000 12234445555555 5777777777777777776653
No 10
>2d5b_A Methionyl-tRNA synthetase; rossmann fold, class 1A AARS, isomerase, structural genomics, NPPSFA; 1.80A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 PDB: 1woy_A 1a8h_A 2d54_A
Probab=100.00 E-value=1.3e-38 Score=342.70 Aligned_cols=325 Identities=16% Similarity=0.122 Sum_probs=240.0
Q ss_pred CceEEEEeeCCCCCCCCcccchhhhhHHHHHHHHHHHCCCeEEEeeccCccchHHHHHHHHHHhhCCCCCccCcccHHHH
Q 010356 84 VKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGEL 163 (512)
Q Consensus 84 ~~~v~Ve~~spNp~~~lHvGH~R~~iiGD~lar~l~~~G~~V~~~~~i~D~G~qi~~l~~~~~~~~~~~~~~~~~~i~~l 163 (512)
.+++.|...+|||||++||||+|+++++|+++|++++.||+|.++...+|+|.++...
T Consensus 2 ~~~~~i~~p~py~~g~lHiGH~r~~~~~D~~~R~~r~~G~~V~~~~g~D~~G~~i~~~---------------------- 59 (500)
T 2d5b_A 2 EKVFYVTTPIYYVNAEPHLGHAYTTVVADFLARWHRLDGYRTFFLTGTDEHGETVYRA---------------------- 59 (500)
T ss_dssp CCEEEEECCCEETTSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEECCSHHHHHH----------------------
T ss_pred CCcEEEecCCCCCCCCcchhhHHHHHHHHHHHHHHHcCCCceeeecccCCchHHHHHH----------------------
Confidence 3578999999999999999999999999999999999999999999999988655321
Q ss_pred HHHHHHHhcccCCChHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHcCCeEeee-c--cccccCchHHHH
Q 010356 164 QEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEK-G--ESFYNPYIPGVI 240 (512)
Q Consensus 164 ~~~y~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~L~I~f~~~-~--es~~~~~v~~~~ 240 (512)
+.+. +.+ ++++++.+.+.|++++++|||.+|++ . ++.|.+.+++++
T Consensus 60 ------a~~~-g~~------------------------~~~~~~~~~~~~~~~~~~lgi~~d~~~~t~~~~~~~~~~~~~ 108 (500)
T 2d5b_A 60 ------AQAA-GED------------------------PKAFVDRVSGRFKRAWDLLGIAYDDFIRTTEERHKKVVQLVL 108 (500)
T ss_dssp ------HHHH-TSC------------------------HHHHHHHHHHHHHHHHHHTTCCCSEEEETTSHHHHHHHHHHH
T ss_pred ------HHHc-CCC------------------------HHHHHHHHHHHHHHHHHHhCCcCCCCcccCCHHHHHHHHHHH
Confidence 1111 111 24568889999999999999999743 2 334888999999
Q ss_pred HHHHhCCCeeee--CceEEEEec-----CC---------C----------------------------------------
Q 010356 241 DELSKQGLVEES--QGARVIFIE-----GV---------N---------------------------------------- 264 (512)
Q Consensus 241 ~~L~~~g~~~~~--dGa~~~~~~-----g~---------~---------------------------------------- 264 (512)
++|.++|++|+. .|.+|+.++ +. +
T Consensus 109 ~~L~~~G~iy~~~~~~~~~~~~~~~~~~~~l~~g~c~~~~~~v~~~~~~~wf~~l~~~~~~l~~~~~~~~~~~~p~~~~~ 188 (500)
T 2d5b_A 109 KKVYEAGDIYYGEYEGLYCVSCERFYTEKELVEGLCPIHGRPVERRKEGNYFFRMEKYRPWLQEYIQENPDLIRPEGYRN 188 (500)
T ss_dssp HHHHHTTCEEEEEEEEEEETTTTEECCTTTSBTTBCTTTCSBCEEEEEEEEEECGGGGHHHHHHHHHTCTTSEESHHHHH
T ss_pred HHHHHCCCEEecceEEecCCCcCcccCchhccCCcCCCCCCeeeEEecCceEEEcHHHHHHHHHHHHhCCCeeCCHHHHH
Confidence 999999999976 465554321 00 0
Q ss_pred ----------CCeEEEe--cC---Cccc----------cccch------HHHHHHH-Hh-hcCCceEEEEeeCcccchHH
Q 010356 265 ----------IPLIIVK--SD---GGFN----------YASTD------LAALWYR-LN-EEKAEWIIYVTDVGQQLHFD 311 (512)
Q Consensus 265 ----------~d~vl~k--sD---G~~~----------Y~~~D------iA~~~~k-~~-~~~~d~~iyV~g~~q~~hf~ 311 (512)
.|..+.| ++ |.+. |+... ++|+..+ +. .++.| +|+.|.||.. |.
T Consensus 189 ~~~~~l~~~l~Dw~iSRp~~~~~WG~piP~~~~~v~~vWfds~~~y~~~~g~~~~~~~~~~~p~d--i~~~G~D~~~-fh 265 (500)
T 2d5b_A 189 EVLAMLAEPIGDLSISRPKSRVPWGIPLPWDENHVTFVWFDALLNYVSALDYPEGEAYRTFWPHA--WHLIGKDILK-PH 265 (500)
T ss_dssp HHHHHHTSCCCCEECEEETTTCCSSCEETTEEEEEECHHHHHHTHHHHTTTTTTCHHHHHHGGGE--EEEEEGGGHH-HH
T ss_pred HHHHHHhcCCCCeecccccccccCccccCCCCCCeeEEccccchhhHHHcCCCCCchHHHcCCCe--EEEEeechhh-hH
Confidence 1333333 22 3211 11110 1121100 11 13444 8899999976 44
Q ss_pred HHH--HHHHHcCCCCCCCCCCCceEEEEeEEEECCCCcceeeecCCeecHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHH
Q 010356 312 MVF--SAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAKNRSKAVLIERGKDKEWTEEELE 389 (512)
Q Consensus 312 ~l~--~~~~~~g~~~~~~~~~~~~~Hv~~g~V~~~~g~kmSkR~G~~v~l~dll~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (512)
+++ +.+.++|+. +...+.|. |+|+.++|+|||||+||+|++.|++++
T Consensus 266 ~~~~~a~~~~~g~~-----~~~~v~~~--G~v~~~~G~KMSKS~GN~i~p~d~i~~------------------------ 314 (500)
T 2d5b_A 266 AVFWPTMLKAAGIP-----MYRHLNVG--GFLLGPDGRKMSKTLGNVVDPFALLEK------------------------ 314 (500)
T ss_dssp HTHHHHHHHHHTCC-----CCSEEEEE--CCEECTTSSCCCTTTTCCCCHHHHHHH------------------------
T ss_pred HHHHHHHHHHcCCC-----CCcEEEEC--ceEEeCCCCcccccCCCCCCHHHHHHh------------------------
Confidence 444 556678874 34567776 889977999999999999999999998
Q ss_pred HHHHhhchhhHHHHhhc-cCCCCCccccccccccccC-CchHHHHHHHHHHHHHHHhhcCChhhhhhcCCCCCCCHHHHH
Q 010356 390 QTAEAVGYGAAKYFDLK-NNRLTNYTFSFDQMLNDKG-NTAVYLLYAHARICSIIRKSGKDIEELKKTGSLVLDHADERA 467 (512)
Q Consensus 390 ~~a~~~~~~airy~~L~-~~~~~~~~Fd~~~~~~~~~-~~g~ylqY~~aR~~sil~k~~~~~~~~~~~~~~~l~~~~e~~ 467 (512)
+|+|++||++++ .++.++++||++.+.+..+ ...+.++++++|+.+++++...+. ++ .+.++.
T Consensus 315 -----~g~DalR~~ll~~~~~~~d~~fs~~~~~~~~~~~l~~~l~n~~~r~~~~~~~~~~~~--~~--------~~~~~~ 379 (500)
T 2d5b_A 315 -----YGRDALRYYLLREIPYGQDTPVSEEALRTRYEADLADDLGNLVQRTRAMLFRFAEGR--IP--------EPVAGE 379 (500)
T ss_dssp -----HCHHHHHHHHHHHSCTTSCEECCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHSTTB--CC--------CCCCCG
T ss_pred -----cCcHHHHHHHHhcCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--CC--------chhHHH
Confidence 799999999998 6889999999999877432 233457788899999887764211 11 011256
Q ss_pred HHHHHHhhHHHHHHHHHhcChHHHHHHHHHHHHHHhcchhccc
Q 010356 468 LGLHLLHFSEVIEEALTNLLPNVVCEYLYNLSEYFTRFYSNCQ 510 (512)
Q Consensus 468 L~~~l~~~~~~v~~a~~~~~p~~l~~yl~~La~~fn~fY~~~~ 510 (512)
|+..+.++++.+.+++++++|+.++.++++++..+|.|++.++
T Consensus 380 l~~~l~~~~~~v~~a~~~~~~~~a~~~l~~l~~~~n~y~~~~k 422 (500)
T 2d5b_A 380 ELAEGTGLAGRLRPLVRELKFHVALEEAMAYVKALNRYINEKK 422 (500)
T ss_dssp GGGGGGGHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhcC
Confidence 7888999999999999999999999999999999999998654
No 11
>3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA synthetase, ATP-binding, ligas binding, nucleotide-binding, protein biosynthesis; HET: CIT; 1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A 3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A* 1pg2_A* 1qqt_A 1mea_A 1med_A
Probab=100.00 E-value=2.1e-37 Score=337.15 Aligned_cols=329 Identities=13% Similarity=0.158 Sum_probs=242.9
Q ss_pred CCceEEEEeeCCCCCCCCcccchhhhhHHHHHHHHHHHCCCeEEEeeccCccchHHHHHHHHHHhhCCCCCccCcccHHH
Q 010356 83 RVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGE 162 (512)
Q Consensus 83 ~~~~v~Ve~~spNp~~~lHvGH~R~~iiGD~lar~l~~~G~~V~~~~~i~D~G~qi~~l~~~~~~~~~~~~~~~~~~i~~ 162 (512)
..+++.|--.-|+|||++||||+|++++||+|+|+++++||+|.++.+++|+|.++...+...
T Consensus 16 ~~~~~~v~~~~py~ng~lHiGH~r~~v~~D~laR~~r~~G~~V~~~~g~D~~G~~i~~~a~~~----------------- 78 (560)
T 3h99_A 16 VAKKILVTCASPYANGSIHLGHMLEHIQADVWVRYQRMRGHEVNFICADDAHGTPIMLKAQQL----------------- 78 (560)
T ss_dssp -CCEEEEEECCCBTTSCCBHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHHH-----------------
T ss_pred CCCcEEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHHHcCCeEEEeeeecCcCcHHHHHHHHh-----------------
Confidence 345666655567777999999999999999999999999999999999999999886433110
Q ss_pred HHHHHHHHhcccCCChHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHcCCeEee-ecc--ccccCchHHH
Q 010356 163 LQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEE-KGE--SFYNPYIPGV 239 (512)
Q Consensus 163 l~~~y~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~L~I~f~~-~~e--s~~~~~v~~~ 239 (512)
+.+ ++++++.+.+.|++++++|||.+|. ... ..|.+.++++
T Consensus 79 ------------g~~------------------------~~~~~~~~~~~~~~~~~~lgi~~d~~~~t~~~~~~~~v~~~ 122 (560)
T 3h99_A 79 ------------GIT------------------------PEQMIGEMSQEHQTDFAGFNISYDNYHSTHSEENRQLSELI 122 (560)
T ss_dssp ------------TSC------------------------HHHHHHHHHHHHHHHHHHTTCCCSEEEESSSHHHHHHHHHH
T ss_pred ------------CCC------------------------HHHHHHHHHHHHHHHHHHcCCCCCCceeCCCHHHHHHHHHH
Confidence 011 1356778889999999999999963 333 3677889999
Q ss_pred HHHHHhCCCeeeeCceEEEEec-----------------------C----------------------------------
Q 010356 240 IDELSKQGLVEESQGARVIFIE-----------------------G---------------------------------- 262 (512)
Q Consensus 240 ~~~L~~~g~~~~~dGa~~~~~~-----------------------g---------------------------------- 262 (512)
+++|.++|++|+.++.+|+... |
T Consensus 123 ~~~L~~~G~iy~~~~~~~~~~~~~~~l~~~~v~g~cp~c~~~~~~gd~ce~cg~~~~~~~l~~~~~~~~g~~~~~~~~~~ 202 (560)
T 3h99_A 123 YSRLKENGFIKNRTISQLYDPEKGMFLPDRFVKGTCPKCKSPDQYGDNCEVCGATYSPTELIEPKSVVSGATPVMRDSEH 202 (560)
T ss_dssp HHHHHHTTCEEEEEEEEEEETTTTEECCGGGEEEECTTTCCSSEETTBCTTTCCBCCGGGCEEEEETTTCCCCEEEEEEE
T ss_pred HHHHHHCCCEEEeeeeEeecCccCceecchhcCCCCCCCCCcccccchhhhccccCChhhhcCCccccCCCCceEEecce
Confidence 9999999999998888876321 0
Q ss_pred -----------------------------------CCCCeEEEecC---Cc--------cccccch--HHHH--H--HH-
Q 010356 263 -----------------------------------VNIPLIIVKSD---GG--------FNYASTD--LAAL--W--YR- 289 (512)
Q Consensus 263 -----------------------------------~~~d~vl~ksD---G~--------~~Y~~~D--iA~~--~--~k- 289 (512)
...|..+.|.. |. ..|+.-| ++|. . +.
T Consensus 203 ~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~D~~IsR~~~~WG~~iP~~~~~viyvW~da~~~y~s~~~~~~~ 282 (560)
T 3h99_A 203 FFFDLPSFSEMLQAWTRSGALQEQVANKMQEWFESGLQQWDISRDAPYFGFEIPNAPGKYFYVWLDAPIGLMGSFKNLCD 282 (560)
T ss_dssp EEECGGGGHHHHHHHHHTSCSCHHHHHHHHHHHHHCCCCEECEEESSCSSCBCTTCTTEEECHHHHHHHHHHHHHHHHHH
T ss_pred EEEEHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhcCCCCCCccccCCcCCeeCCCCCCceEEeCcccchhHHHHHHHHhh
Confidence 01122333332 22 1122222 2221 0 10
Q ss_pred -------Hh-hcCCc---eEEEEeeCcccchHHHHH-HHHHHcCCCCCCCCCCCceEEEEeEEEECCCCcceeeecCCee
Q 010356 290 -------LN-EEKAE---WIIYVTDVGQQLHFDMVF-SAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVV 357 (512)
Q Consensus 290 -------~~-~~~~d---~~iyV~g~~q~~hf~~l~-~~~~~~g~~~~~~~~~~~~~Hv~~g~V~~~~g~kmSkR~G~~v 357 (512)
+. -|+.| .+++|+|.||..++...+ +++.++|+. ++..+ +.+|+|+. +|+|||||+||+|
T Consensus 283 ~~~~~~~~~~~wp~~~~~~~~~~~G~D~~~fh~~~~~a~l~~~g~~-----~p~~v--~~hg~v~~-~G~KMSKS~GNvv 354 (560)
T 3h99_A 283 KRGDSVSFDEYWKKDSTAELYHFIGKDIVYFLSLFWPAMLEGSNFR-----KPSNL--FVHGYVTV-NGAKMSKSRGTFI 354 (560)
T ss_dssp HHTCSSHHHHHHBTTCCSEEEEEEEGGGHHHHHTHHHHHHHHTTBC-----CCSEE--EEECCEEE-TTEECCTTTTCCC
T ss_pred ccCChhhHHHhCcCCCCceeEEEeccccchhHHHHHHHHHHhCCCC-----CCcEE--EEEeEEEe-CCeeccccCCCcC
Confidence 10 12233 568999999976333333 567788884 22332 34688986 8999999999999
Q ss_pred cHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhchhhHHHHhhccCC-C-CCcccccccccc-ccCCchHHHHHH
Q 010356 358 RLVDLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNR-L-TNYTFSFDQMLN-DKGNTAVYLLYA 434 (512)
Q Consensus 358 ~l~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~airy~~L~~~~-~-~~~~Fd~~~~~~-~~~~~g~ylqY~ 434 (512)
++.|++++ +|+||+|||+++..+ . ++++||++.+.+ .+.+....++|+
T Consensus 355 ~p~d~i~~-----------------------------~GaDalR~~ll~~~~~~~~d~~f~~~~~~~~~~~~l~~~l~n~ 405 (560)
T 3h99_A 355 KASTWLNH-----------------------------FDADSLRYYYTAKLSSRIDDIDLNLEDFVQRVNADIVNKVVNL 405 (560)
T ss_dssp BHHHHHHH-----------------------------SCHHHHHHHHHHHCCSSCCCEEECHHHHHHHHHHHCCCCCTHH
T ss_pred CHHHHHHH-----------------------------cCcHHHHHHHHHhCCCCCCCCCcCHHHHHHHHHHHHHHHHHHH
Confidence 99999998 899999999999866 4 799999999876 455566677888
Q ss_pred HHHHHHHHHhhcCChhhhhhcCCCCCCCHHHHHHHHHHHhhHHHHHHHHHhcChHHHHHHHHHHHHHHhcchhccc
Q 010356 435 HARICSIIRKSGKDIEELKKTGSLVLDHADERALGLHLLHFSEVIEEALTNLLPNVVCEYLYNLSEYFTRFYSNCQ 510 (512)
Q Consensus 435 ~aR~~sil~k~~~~~~~~~~~~~~~l~~~~e~~L~~~l~~~~~~v~~a~~~~~p~~l~~yl~~La~~fn~fY~~~~ 510 (512)
++|+++++++...+. ++ ..+.+++|+..+.++++.+.+++++++|+.+++++++|+..+|.||+.++
T Consensus 406 ~~R~~~~~~~~~~~~--~~-------~~~~d~~ll~~l~~~~~~v~~~~e~~~~~~a~~~l~~l~~~~n~Yi~~~k 472 (560)
T 3h99_A 406 ASRNAGFINKRFDGV--LA-------SELADPQLYKTFTDAAEVIGEAWESREFGKAVREIMALADLANRYVDEQA 472 (560)
T ss_dssp HHTTHHHHHHHSTTB--CC-------SSCSCHHHHHHHHHTHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcCCC--CC-------CccccHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhcC
Confidence 899999998864321 11 12345789999999999999999999999999999999999999998765
No 12
>2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein biosynthesis, ligase, aminoacyl- synthetase; HET: ADN CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A*
Probab=100.00 E-value=3.6e-37 Score=333.08 Aligned_cols=330 Identities=15% Similarity=0.133 Sum_probs=241.0
Q ss_pred CCceEEEEeeCCCCCCCCcccchhhhhHHHHHHHHHHHCCCeEEEeeccCccchHHHHHHHHHHhhCCCCCccCcccHHH
Q 010356 83 RVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGE 162 (512)
Q Consensus 83 ~~~~v~Ve~~spNp~~~lHvGH~R~~iiGD~lar~l~~~G~~V~~~~~i~D~G~qi~~l~~~~~~~~~~~~~~~~~~i~~ 162 (512)
..+++.|.-+-|||||++||||+|+++++|+|+|++++.||+|.++..++|+|.++...+
T Consensus 10 ~~~~~~i~t~~P~~ng~lHiGHa~~~i~~D~l~R~~r~~G~~V~~~~g~D~~G~~i~~~a-------------------- 69 (524)
T 2x1l_A 10 GSEPFYITTAIAYPNGVPHIGHAYEYIATDAIARFKRLDGYDVRYLTGTDVHGQKMAETA-------------------- 69 (524)
T ss_dssp -CCEEEEEECCBCCSSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCCSHHHHHHH--------------------
T ss_pred CCCCEEEeeCCCCCCCCcccchhHHHHHHHHHHHHHHhcCCceeeeCCcCcccHHHHHHH--------------------
Confidence 356788989999999999999999999999999999999999999999999887664221
Q ss_pred HHHHHHHHhcccCCChHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHcCCeEe-eecccc--ccCchHHH
Q 010356 163 LQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLE-EKGESF--YNPYIPGV 239 (512)
Q Consensus 163 l~~~y~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~L~I~f~-~~~es~--~~~~v~~~ 239 (512)
.+. +.+ ++++++.+.+.|++++++|||.+| +..++. |.+.++++
T Consensus 70 --------~~~-g~~------------------------~~~~~~~~~~~~~~~~~~lgi~~d~~~~t~~~~~~~~v~~~ 116 (524)
T 2x1l_A 70 --------AKE-GIP------------------------AAELARRNSDVFQRLQEKLNISFDRFIRTSDADHYEASKAI 116 (524)
T ss_dssp --------HHH-TSC------------------------HHHHHHHHHHHHHHHHHHTTCCCSEEEETTSHHHHHHHHHH
T ss_pred --------HHc-CCC------------------------HHHHHHHHHHHHHHHHHHcCCcCCCCeecCCHHHHHHHHHH
Confidence 110 011 245688899999999999999996 444444 88899999
Q ss_pred HHHHHhCCCeeeeCceEEEEec------------C--------C-CCCeEEEec--------------------------
Q 010356 240 IDELSKQGLVEESQGARVIFIE------------G--------V-NIPLIIVKS-------------------------- 272 (512)
Q Consensus 240 ~~~L~~~g~~~~~dGa~~~~~~------------g--------~-~~d~vl~ks-------------------------- 272 (512)
+++|.++|++|+.+|.+|+... | . +.+.+.+.+
T Consensus 117 ~~~L~~~G~iY~~~~~v~~~~~~~t~l~~~ev~~g~~G~~c~~~~g~~v~~~~~~qwF~~l~~~~~~l~~~~~~~~~~i~ 196 (524)
T 2x1l_A 117 WKRMADAGDIYLDAYKGWYSIRDERFFTENETTEQPDGTRIATETGAPVTWTEEQTYFFRLSAYTDRLLALYEEHPEFIG 196 (524)
T ss_dssp HHHHHHTTCEEEEEEEEEEETTTTEEECGGGEEECTTSCEEETTTCCBEEEEEEEEEEECGGGSHHHHHHHHHHCGGGEE
T ss_pred HHHHHHCCCEEeeeeeeeccCccCccccHHHhccCCCCCccccccCCcceEEecCCeEeeHHHHHHHHHHHHHhCCCeeC
Confidence 9999999999999998877432 0 0 011111110
Q ss_pred ---------------------------CCcc--------ccc--cchHHHHH---H------HHh-hcCCceEEEEeeCc
Q 010356 273 ---------------------------DGGF--------NYA--STDLAALW---Y------RLN-EEKAEWIIYVTDVG 305 (512)
Q Consensus 273 ---------------------------DG~~--------~Y~--~~DiA~~~---~------k~~-~~~~d~~iyV~g~~ 305 (512)
=|.+ .|+ .+.+++.. | .+. .+++| +++.|.|
T Consensus 197 p~~~~~~~~~~~~~~l~Dw~iSRqr~~WG~~iP~~~~~~~yvWfds~~~~~~~~g~p~~~~~~~~~~~p~d--i~~~G~D 274 (524)
T 2x1l_A 197 PDARRNEIVSFVSGGLKDLSISRTTFDWGVPVPDHPDHVMYVWVDALTNYLTGVGFPDTESESFRRYWPAD--LHMIGKD 274 (524)
T ss_dssp SHHHHHHHHHHHTTCCCCEECEESSCCSSCEETTEEEEEECHHHHHHTHHHHTTTTTCTTSHHHHHHCSCS--EEEEEGG
T ss_pred CHHHHHHHHHHHHcCCcccceECCCCCcCccCCCCCCCEEEEecCCchHHHHHcCCCCCchHHHHhhCCCe--EEEEeec
Confidence 0110 111 00011000 0 000 12344 6777888
Q ss_pred ccchHHHHH--HHHHHcCCCCCCCCCCCceEEEEeEEEECCCCcceeeecCCeecHHHHHHHHHHHHHHHHHHhcCCCCC
Q 010356 306 QQLHFDMVF--SAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAKNRSKAVLIERGKDKEW 383 (512)
Q Consensus 306 q~~hf~~l~--~~~~~~g~~~~~~~~~~~~~Hv~~g~V~~~~g~kmSkR~G~~v~l~dll~~~~~~~~~~~~~~~~~~~~ 383 (512)
|. .|.+++ +.+.++|+. +...+.+. |+|+. +|+|||||+||+|++.|++++
T Consensus 275 ~~-~fh~~~~~a~l~~~g~~-----~~~~v~~h--G~v~~-~G~KMSKS~GN~v~p~d~i~~------------------ 327 (524)
T 2x1l_A 275 II-RFHTVYWPAFLMSAGLP-----LPKRIFAH--GWLLN-RGEKMSKSIGNVVDPVNLVDT------------------ 327 (524)
T ss_dssp GH-HHHHTHHHHHHHHHTCC-----CCSCEEEE--CCEEE-CSCSEETTTEESSCHHHHHHH------------------
T ss_pred hh-HhHHHHHHHHHHHCCCC-----CCcEEEEC--cEEEe-CCcccCCcCCCCCCHHHHHHH------------------
Confidence 76 344443 456677874 22333333 78885 799999999999999999998
Q ss_pred CHHHHHHHHHhhchhhHHHHhhc-cCCCCCccccccccccc-cCCchHHHHHHHHHHHHHHHhhcCChhhhhhcCCCCCC
Q 010356 384 TEEELEQTAEAVGYGAAKYFDLK-NNRLTNYTFSFDQMLND-KGNTAVYLLYAHARICSIIRKSGKDIEELKKTGSLVLD 461 (512)
Q Consensus 384 ~~~~~~~~a~~~~~~airy~~L~-~~~~~~~~Fd~~~~~~~-~~~~g~ylqY~~aR~~sil~k~~~~~~~~~~~~~~~l~ 461 (512)
+|+|++||++++ ..+.++++||++.+.+. +.+..+.++++..|+.+++++...+. ++. ....
T Consensus 328 -----------~g~DalR~~ll~~~~~~~d~~fs~~~l~~~~~~~l~n~l~n~~~r~~~~~~~~~~~~--~~~---~~~~ 391 (524)
T 2x1l_A 328 -----------FGLDQVRYFLLREVPFGQDGSYNEDAIIGRVNADLANELGNLAQRSLSMVAKNLGAA--VPD---PGEF 391 (524)
T ss_dssp -----------HCHHHHHHHHHHHSCTTSCEEECHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHSTTB--CCC---CCCC
T ss_pred -----------cChHHHHHHHHhcCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--CCC---cccc
Confidence 799999999998 67899999999998774 34455668888899999988753221 111 1123
Q ss_pred CHHHHHHHHHHHhhHHHHHHHHHhcChHHHHHHHHHHHHHHhcchhccc
Q 010356 462 HADERALGLHLLHFSEVIEEALTNLLPNVVCEYLYNLSEYFTRFYSNCQ 510 (512)
Q Consensus 462 ~~~e~~L~~~l~~~~~~v~~a~~~~~p~~l~~yl~~La~~fn~fY~~~~ 510 (512)
++.++.|+..+.++++.+.+++++++|+.++.++++++..+|.||+.++
T Consensus 392 ~~~d~~l~~~l~~~~~~v~~a~~~~~~~~a~~~l~~l~~~~n~y~~~~k 440 (524)
T 2x1l_A 392 TDEDTALLAAADALLERVREHFDVPAMHLALEAIWSVLGAANRYFSAQE 440 (524)
T ss_dssp CHHHHHHHHHHHTHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred chhHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhcC
Confidence 5778899999999999999999999999999999999999999998764
No 13
>3c8z_A Cysteinyl-tRNA synthetase; cysteine ligase, rossmann fold, Cys-SA inhibitor, zinc binding, ATP-binding, aminoacyl-tRNA synthetase; HET: 5CA 1PE EPE; 1.60A {Mycobacterium smegmatis}
Probab=100.00 E-value=5.4e-35 Score=306.36 Aligned_cols=301 Identities=13% Similarity=0.044 Sum_probs=208.3
Q ss_pred CceEEEEeeCCCCCCCCcccchhhhhHHHHHHHHHHHCCCeEEEeeccCccchHHHHHHHHHHhhCCCCCccCcccHHHH
Q 010356 84 VKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGEL 163 (512)
Q Consensus 84 ~~~v~Ve~~spNp~~~lHvGH~R~~iiGD~lar~l~~~G~~V~~~~~i~D~G~qi~~l~~~~~~~~~~~~~~~~~~i~~l 163 (512)
+++|.++.|+|||+|++||||+|++++||+|+|+|++.||+|.++++++|+|..|...+
T Consensus 37 ~~~v~~y~~gPt~yg~~HiGHar~~v~~DvlaR~lr~~G~~V~~~~~~dd~g~ki~~~A--------------------- 95 (414)
T 3c8z_A 37 GPTATMYVCGITPYDATHLGHAATYLTFDLVHRLWLDAGHTVQYVQNVTDVDDPLFERA--------------------- 95 (414)
T ss_dssp CSEEEEEECCCCTTSCCBHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCSCHHHHHHH---------------------
T ss_pred CCCceEEeCCCcCCCCcCccccHHHHHHHHHHHHHHHcCCCEEeCCCCCCccHHHHHHH---------------------
Confidence 56799999999999999999999999999999999999999999999999886553221
Q ss_pred HHHHHHHhcccCCChHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHcCCe-Eeee-ccccccCchHHHHH
Q 010356 164 QEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVD-LEEK-GESFYNPYIPGVID 241 (512)
Q Consensus 164 ~~~y~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~L~I~-f~~~-~es~~~~~v~~~~~ 241 (512)
.+. | ..|+++++.+.+.|++++++|||. +|++ +++.|.+.++++++
T Consensus 96 -------~~~--------------------g-----~~~~~~~~~~~~~~~~~~~~Lgi~~~d~~~r~t~~~~~~~~~~~ 143 (414)
T 3c8z_A 96 -------ERD--------------------G-----IDWRTLGDRETQLFREDMAALRVLPPHDYVAATDAIAEVVEMVE 143 (414)
T ss_dssp -------HHH--------------------T-----CCHHHHHHHHHHHHHHHHHHTTCCCCSEEEEGGGCHHHHHHHHH
T ss_pred -------HHc--------------------C-----CCHHHHHHHHHHHHHHHHHHcCCCCCcceecccchHHHHHHHHH
Confidence 110 1 124567899999999999999999 8644 56778888999999
Q ss_pred HHHhCCCeeeeC----ceEEEEecCC--------------------------------CCCeEEEe--cCCccccccch-
Q 010356 242 ELSKQGLVEESQ----GARVIFIEGV--------------------------------NIPLIIVK--SDGGFNYASTD- 282 (512)
Q Consensus 242 ~L~~~g~~~~~d----Ga~~~~~~g~--------------------------------~~d~vl~k--sDG~~~Y~~~D- 282 (512)
+|.++|++|+.+ |.+||+++.. ..|++++| ..|.+.|.++.
T Consensus 144 ~L~~kG~~Y~~~~~~e~~~~f~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~k~~~~D~~lWk~~~pg~~~Wda~~g 223 (414)
T 3c8z_A 144 KLLASGAAYIVEDAEYPDVYFRADATAQFGYESGYDRDTMLTLFAERGGDPDRPGKSDQLDALLWRAERPGEPSWPSPFG 223 (414)
T ss_dssp HHHHHTSEEECSCSSCCCEEECTTSSTTTTTTTCCCHHHHHHHHHHTTCCTTCTTCSSTTCEEEEEECCTTSCCBCCTTC
T ss_pred HHHHCCCEEeccCCcCCCEEEEchhhhhhHhhcCCCHHHHHHHHhhccccccccccCCcchhhhcCCCCCCCCCCCCCCC
Confidence 999999999988 9999987510 02456666 35666654321
Q ss_pred ---HHHHHHH----HhhcCCceEEEEe--eCcccc-hHHHHHHHHHHc-CCCCCCCCCCCceEEEEeEEEECCCCcceee
Q 010356 283 ---LAALWYR----LNEEKAEWIIYVT--DVGQQL-HFDMVFSAAKRA-GWLSADDSTYPKASHVGFGLVLGEDGKRLRT 351 (512)
Q Consensus 283 ---iA~~~~k----~~~~~~d~~iyV~--g~~q~~-hf~~l~~~~~~~-g~~~~~~~~~~~~~Hv~~g~V~~~~g~kmSk 351 (512)
..||+.+ ...++ ..++|+ |.|+.. |+....+.+.++ |.. ++...+.|. |+|. .+|+||||
T Consensus 224 ~g~pgWhiec~a~~~~~~g--~~~di~~~G~D~~~~H~~~~~a~~~a~~g~~----~~~~~~~h~--g~v~-~~G~KMSK 294 (414)
T 3c8z_A 224 RGRPGWHVECSAIALTRIG--TGLDIQGGGSDLIFPHHEYSAAHAESVTGER----RFARHYVHT--GMIG-WDGHKMSK 294 (414)
T ss_dssp SEEECHHHHHHHHHHHHTC--SCEEEEEEEGGGTTTHHHHHHHHHHHHHCCS----CSEEEEEEE--CCBC---------
T ss_pred CCCCCccchhHHHHHHhcC--CCceEEEeccccccHHHHHHHHHHHHhcCCC----CcCeEEEEc--CEEe-cCCeEccc
Confidence 1222221 01122 234455 666543 444433445554 663 345566675 7787 47999999
Q ss_pred ecCCeecHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhchhhHHHHhhccCCCCCccccccccccccCCchHHH
Q 010356 352 RFSEVVRLVDLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNRLTNYTFSFDQMLNDKGNTAVYL 431 (512)
Q Consensus 352 R~G~~v~l~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~airy~~L~~~~~~~~~Fd~~~~~~~~~~~g~yl 431 (512)
|+||+|++.|+++++ +|++++|||+++.++.++++||++.+.+...
T Consensus 295 S~GN~v~~~~ll~~g----------------------------~g~D~lR~~ll~~~~~~d~~fs~~~l~~~~~------ 340 (414)
T 3c8z_A 295 SRGNLVLVSQLRAQG----------------------------VDPSAIRLGLFSGHYREDRFWSNEVLDEANA------ 340 (414)
T ss_dssp -----CBHHHHHHTT----------------------------CCHHHHHHHHHTSCTTSCBCCCHHHHHHHHH------
T ss_pred ccCCcCCHHHHhhcc----------------------------CCcchheeEEEecCcCCCCCcCHHHHHHHHH------
Confidence 999999999999974 6999999999998889999999998866432
Q ss_pred HHHHHHHHHHHHhhcCChhhhhhcCCCCCCCHHHHHHHHHHHhhHHHHHHHH-HhcChHHHHHHHHHHHHHHhc
Q 010356 432 LYAHARICSIIRKSGKDIEELKKTGSLVLDHADERALGLHLLHFSEVIEEAL-TNLLPNVVCEYLYNLSEYFTR 504 (512)
Q Consensus 432 qY~~aR~~sil~k~~~~~~~~~~~~~~~l~~~~e~~L~~~l~~~~~~v~~a~-~~~~p~~l~~yl~~La~~fn~ 504 (512)
.+.|+.+.+++.. . .. +..+.+.+.+++ ++++.+.++..+++++...|+
T Consensus 341 --~l~~l~n~~~~~~-------~---~~------------~~~~~~~v~~a~~d~~~~~~Al~~i~~~~~~~n~ 390 (414)
T 3c8z_A 341 --RLARWRSATALPE-------A---PD------------ATDVIARVRQYLADDLDTPKALAALDGWCTDALS 390 (414)
T ss_dssp --HHHHHHHHHTSSC-------B---SC------------CHHHHHHHHHHHHBTCCHHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHhcc-------c---hh------------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh
Confidence 2345555554321 0 00 123456678888 799999999999999999987
No 14
>3sp1_A Cysteinyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, LYME disease; HET: AMP; 2.55A {Borrelia burgdorferi}
Probab=100.00 E-value=7.6e-35 Score=307.04 Aligned_cols=327 Identities=15% Similarity=0.094 Sum_probs=213.5
Q ss_pred eEEEEeeCCCCCCCCcccchhhhhHHHHHHHHHHHCCCeEEEeeccCccchHHHHHHHHHHhhCCCCCccCcccHHHHHH
Q 010356 86 KAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQE 165 (512)
Q Consensus 86 ~v~Ve~~spNp~~~lHvGH~R~~iiGD~lar~l~~~G~~V~~~~~i~D~G~qi~~l~~~~~~~~~~~~~~~~~~i~~l~~ 165 (512)
+|-++.|+|||+|++||||+|++|++|+|+|+|++.||+|.++.+++|+|+|.|.- + .++++|.
T Consensus 42 ~v~~YvcgPTvYg~~HIGHar~~v~~Dvl~R~lr~~Gy~V~~v~niTDvGhltG~~----------D--ehddKI~---- 105 (501)
T 3sp1_A 42 NVKVYACGPTVYNYAHIGNFRTYIFGDLLIKTLRFLGYKVNYAMNITDIGHLTGDL----------D--DGEDKVA---- 105 (501)
T ss_dssp CEEEEECCCBCSSCCCHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEBCSCCC----------------------------
T ss_pred cceEEeCCCcCCCCcchhhhHHHHHHHHHHHHHHHcCCceeEEeeecccccccCCC----------C--CCCcHHH----
Confidence 89999999999999999999999999999999999999999999999999986520 1 1355443
Q ss_pred HHHHHhcccCCChHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHcCCeEee-e-ccccccCchHHHHHHH
Q 010356 166 FYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEE-K-GESFYNPYIPGVIDEL 243 (512)
Q Consensus 166 ~y~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~L~I~f~~-~-~es~~~~~v~~~~~~L 243 (512)
.+|.+. | ..|+++++.+.+.|++++++|||.+++ . ..+.|.+.+++++++|
T Consensus 106 --~~A~~~--------------------g-----~~~~e~a~~~~~~f~~d~~~Lgi~~d~~~~~~t~hi~~v~~~i~~L 158 (501)
T 3sp1_A 106 --KTAREK--------------------G-----LTVYEISEFFTEAFFNDCRKLNIVYPDKVLVASKHIPIMIEVVKIL 158 (501)
T ss_dssp ----------------------------------CCHHHHHHHHHHHHHHHHHHTTCCCCSEEEEGGGCHHHHHHHHHHH
T ss_pred --HHHHHc--------------------C-----CCHHHHHHHHHHHHHHHHHHcCCCCCCcccCcchHHHHHHHHHHHH
Confidence 333321 1 124778999999999999999999953 3 3578888999999999
Q ss_pred HhCCCeeeeCceEEEEec-----C------------------------CCCCeEEEec-----CCccccccch----HHH
Q 010356 244 SKQGLVEESQGARVIFIE-----G------------------------VNIPLIIVKS-----DGGFNYASTD----LAA 285 (512)
Q Consensus 244 ~~~g~~~~~dGa~~~~~~-----g------------------------~~~d~vl~ks-----DG~~~Y~~~D----iA~ 285 (512)
.++|++|+.+|.+||+++ | +..|++|||. .|.+.|.++. .+|
T Consensus 159 ~~kG~aY~~~g~Vyf~v~~f~~yG~ls~~~~~~~~~~g~r~~~~~~K~~p~Df~lWk~~p~~~~~~~~W~spwG~GrPGW 238 (501)
T 3sp1_A 159 EEKKITYFSNGNVYFDTSCFKSYGEMAGIDLIDKDMTLPRVDVDKFKRNKTDFVLWFTNSKFKDQEMKWDSPWGFGYPSW 238 (501)
T ss_dssp HHTTCEEEETTEEEECGGGCTTTTTTTC-----------------CCSSTTCEEEEEECCC-----CCBCCTTCSEEECH
T ss_pred HHCCCEEEeCCcEEecCCccCCccccCCCChhhhhccCCccCcccccCCchhhHhcCCCCCCCCCCceecCCCCCCCCCc
Confidence 999999999999999753 1 1247889986 4777787764 345
Q ss_pred HHHHH----hhcCCceEEEEeeCcccchHHHH---HHHHHHcCCCCCCCCCCCceEEEEeEEEECCCCcceeeecCCeec
Q 010356 286 LWYRL----NEEKAEWIIYVTDVGQQLHFDMV---FSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVR 358 (512)
Q Consensus 286 ~~~k~----~~~~~d~~iyV~g~~q~~hf~~l---~~~~~~~g~~~~~~~~~~~~~Hv~~g~V~~~~g~kmSkR~G~~v~ 358 (512)
|+.+- ..++. .++|++.+.+..|++. .+.++++... +++..|+|. |+|. .+|+|||||+||+|+
T Consensus 239 hiEcsam~~~~lg~--~~DIH~gG~DLifpHheneiAqs~a~~g~----~~~~~w~H~--g~v~-~~G~KMSKSlGN~it 309 (501)
T 3sp1_A 239 HLECAAMNLEYFKD--ALDIHLGGVDHIGVHHINEIAIAECFLNK----KWCDVFVHG--EFLI-MDYNKMSKSRGNFIT 309 (501)
T ss_dssp HHHHHHHHHHHTTT--CCCEEEEEGGGTTTHHHHHHHHHHHHHTS----CCCSEEEEE--CCEE-CC----------CCC
T ss_pred hHHHHHHHHHHcCC--CceEEeeccccccchHHHHHHHHHHccCC----CCCeEEEEe--eeEe-eCCeEccccCCCcCC
Confidence 55431 12332 2456666666555543 3344444322 578899998 7787 589999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhchhhHHHHhhccCCCCCccccccccccccCCchHHHHHHHHHH
Q 010356 359 LVDLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNRLTNYTFSFDQMLNDKGNTAVYLLYAHARI 438 (512)
Q Consensus 359 l~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~airy~~L~~~~~~~~~Fd~~~~~~~~~~~g~ylqY~~aR~ 438 (512)
+.|+++++ +|++++|||+|+.+++++++|+++.+.+... .+-+.+.|+
T Consensus 310 ~~dll~~g----------------------------yg~d~lR~~lls~~yr~~l~fs~~~l~~a~~----~~~~ll~rl 357 (501)
T 3sp1_A 310 VKDLEDQN----------------------------FSPLDFRYLCLTSHYRNQLKFSLDNLQASKI----ARENLINKL 357 (501)
T ss_dssp HHHHHHTT----------------------------CCHHHHHHHHHTSCTTSCEECCHHHHHHHHH----HHHHHHHHH
T ss_pred HHHHHhcC----------------------------CCHHHHHHHHHhccCCCCCccCHHHHHHHHH----hhHHHHHHH
Confidence 99999874 6999999999999999999999998765322 111225666
Q ss_pred HHHHHhhcCChhhhhhcCCCCCCCHHHHHHHHHHHhhHHHHHHHHH-hcChHHHHHHHHHHHHHHh
Q 010356 439 CSIIRKSGKDIEELKKTGSLVLDHADERALGLHLLHFSEVIEEALT-NLLPNVVCEYLYNLSEYFT 503 (512)
Q Consensus 439 ~sil~k~~~~~~~~~~~~~~~l~~~~e~~L~~~l~~~~~~v~~a~~-~~~p~~l~~yl~~La~~fn 503 (512)
...+++............... .+ ...+..+.+.+.+|++ .++-..++..|++++...|
T Consensus 358 ~~~~~~~~~~~~~~~~~~~~~--~~-----~~~~~~~~~~f~~am~dDlnt~~al~~l~~~~~~~~ 416 (501)
T 3sp1_A 358 SYFYESLDPVDLNTLNKDLKN--FG-----FSVEKEYYDSFVEKISFDLNVAQGLALLWEIIKSDN 416 (501)
T ss_dssp HHHHHTCCHHHHHHHHSCTTS--CS-----SHHHHHHHHHHHHHHHBTSCHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHhhhcccccccccc--hh-----hhhHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHhc
Confidence 666665421000000000000 00 1123345556666666 6888888888888877654
No 15
>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1
Probab=100.00 E-value=1.1e-32 Score=306.91 Aligned_cols=330 Identities=12% Similarity=0.110 Sum_probs=239.6
Q ss_pred ceEEEEeeCCCCCCCCcccchhh-hhHHHHHHHHHHHCCCeEEEeeccCccchHHHHHHHHHHhhCCCCCccCcccHHHH
Q 010356 85 KKAVVDFSSPNIAKEMHVGHLRS-TIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGEL 163 (512)
Q Consensus 85 ~~v~Ve~~spNp~~~lHvGH~R~-~iiGD~lar~l~~~G~~V~~~~~i~D~G~qi~~l~~~~~~~~~~~~~~~~~~i~~l 163 (512)
+++.|....|||||++||||+|+ ++++|+++|++|++||+|.++...+++|.++..-+..
T Consensus 2 ~~~~itt~~Py~nG~lHiGHa~~~~i~~DiiaRy~rm~G~~V~~v~G~D~hG~pie~~A~k------------------- 62 (722)
T 1rqg_A 2 VRYMVTSALPYANGPIHAGHLAGAYLPADIFVRYLRLKGEDVVFICGTDEHGTPISFRALK------------------- 62 (722)
T ss_dssp CEEEEEECCCBTTSCCBHHHHHHHTHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHH-------------------
T ss_pred CCEEEecCCCCCCCchhhchhhccHHHHHHHHHHHHhcCCceEecceeCCCCHHHHHHHHH-------------------
Confidence 47899999999999999999998 9999999999999999999999999999877533210
Q ss_pred HHHHHHHhcccCCChHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHcCCeEeeec---cccccCchHHHH
Q 010356 164 QEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKG---ESFYNPYIPGVI 240 (512)
Q Consensus 164 ~~~y~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~L~I~f~~~~---es~~~~~v~~~~ 240 (512)
. +.+ ++++++.+.+.|++++++|||++|++. +..|.+.+++++
T Consensus 63 ---------~-G~~------------------------p~e~~~~~~~~~~~~~~~lgis~D~~~rT~d~~~~~~v~~~f 108 (722)
T 1rqg_A 63 ---------E-GRS------------------------PREIVDEFHEQIKITFQRAKISFDFFGRTELPIHYKLSQEFF 108 (722)
T ss_dssp ---------H-TCC------------------------HHHHHHHHHHHHHHHHHHHTCCCSEEEETTSHHHHHHHHHHH
T ss_pred ---------c-CCC------------------------HHHHHHHHHHHHHHHHHHhCCCCCCCeeCCCHHHHHHHHHHH
Confidence 0 111 246788999999999999999998653 345778899999
Q ss_pred HHHHhCCCeeeeCceEEEEec-----------------------CC----------------------------------
Q 010356 241 DELSKQGLVEESQGARVIFIE-----------------------GV---------------------------------- 263 (512)
Q Consensus 241 ~~L~~~g~~~~~dGa~~~~~~-----------------------g~---------------------------------- 263 (512)
.+|.++|++|+....+++... |+
T Consensus 109 ~~L~~kG~iY~~~~~v~y~~~~~tfl~d~~v~gtcP~c~~~~~~Gd~c~~~G~~l~~~~l~~p~~~r~g~~v~~~~~~qw 188 (722)
T 1rqg_A 109 LKAYENGHLVKKVTKQAYCEHDKMFLPDRFVIGTCPYCGAEDQKGDQCEVCGRPLTPEILINPRCAICGRPISFRDSAHY 188 (722)
T ss_dssp HHHHHTTCEEEEEEEEEEBTTTTBCCCGGGCCSBCSSSCCSCCCTTTCSSSCCCCCTTSSBSCBCTTTCCBCEEEEEEEE
T ss_pred HHHHHCCCEEecceeeeecCCCCcCcchhhcccccCccCCccCCcchhhhcccccChhhccCCcccCCCcEeEEEEeccE
Confidence 999999999986655444321 00
Q ss_pred -----------------------------------CCCeEEEe--------------cCCccccccch--HHHHH----H
Q 010356 264 -----------------------------------NIPLIIVK--------------SDGGFNYASTD--LAALW----Y 288 (512)
Q Consensus 264 -----------------------------------~~d~vl~k--------------sDG~~~Y~~~D--iA~~~----~ 288 (512)
-.|.-|-| .+|...|..-| ++|.. |
T Consensus 189 F~~l~~~~~~l~~~~~~~~wp~~~~~~~~~wl~~gl~dw~ISR~~~WG~piP~~~~g~~~~~iyvW~da~i~y~~~~~~~ 268 (722)
T 1rqg_A 189 YIKMQDFAERLKRWIEKQPWKPNVKNMVLSWIEEGLEERAITRDLNWGIPVPLDEEDMKGKVLYVWFEAPIGYISITIEH 268 (722)
T ss_dssp EECGGGTHHHHHHHHHSSCCCHHHHHHHHHHHTTCCCCEECEECCSSSCBCSCCCSSSTTCEECHHHHGGGHHHHHHHHH
T ss_pred EEEhHHHHHHHHHHHHhCCCCHHHHHHHHHHHHCCCcccceeccccCccccCccccCCCCCEEEEEeccccchhhhHHHH
Confidence 00111111 12223344434 33321 1
Q ss_pred H--------Hh-hcCC-c---eEEEEeeCcccchHHHHH-HHHHHcC----------CCCCCCCCCCceEEEEeEEEECC
Q 010356 289 R--------LN-EEKA-E---WIIYVTDVGQQLHFDMVF-SAAKRAG----------WLSADDSTYPKASHVGFGLVLGE 344 (512)
Q Consensus 289 k--------~~-~~~~-d---~~iyV~g~~q~~hf~~l~-~~~~~~g----------~~~~~~~~~~~~~Hv~~g~V~~~ 344 (512)
. +. -|+. + ..+++.|.|+..++...+ +.+.++| + +++..+.|. |||+.
T Consensus 269 ~~~~g~~~~~~~~w~~pd~~~~~~h~~GkDii~fH~~~wpA~l~~~~~~l~~d~~rg~-----~~Pk~v~~h--G~v~~- 340 (722)
T 1rqg_A 269 FKRIGKPNEWKKYWLNIDGQTRVIHFIGKDNIPFHAIFWPAFLMAYGKYKDEEVEAEW-----NLPYDIPAN--EYLTL- 340 (722)
T ss_dssp HHHTTCTTTTHHHHBCSSCCEEEEEEEEGGGHHHHHTHHHHHHHTTCCBCSSSCCBCB-----CCCSBCCEE--CCEEE-
T ss_pred HhhcCCchHHHhccCCCCCCCeeEEEccccccccchhhhHHHHhccCCCcccccccCC-----CCCCEEEEe--eeEEe-
Confidence 1 11 1221 2 457788888765433333 4455554 3 234566655 78886
Q ss_pred CCcceeeecCCeecHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhchhhHHHHhhcc-CCCCCccccccccccc
Q 010356 345 DGKRLRTRFSEVVRLVDLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKN-NRLTNYTFSFDQMLND 423 (512)
Q Consensus 345 ~g~kmSkR~G~~v~l~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~airy~~L~~-~~~~~~~Fd~~~~~~~ 423 (512)
+|+|||||+||+|++.|++++ +|+|++|||+++. ...+|++|+++.+.+.
T Consensus 341 ~G~KMSKS~GNvV~p~d~i~~-----------------------------ygaDalR~~ll~~~~~~~D~~fs~~~~~~~ 391 (722)
T 1rqg_A 341 EGKKFSTSRNWAIWVHEFLDV-----------------------------FPADYLRYYLTTIMPETRDSDFSFSDFKVR 391 (722)
T ss_dssp TTEECBTTTTBSCBHHHHTTT-----------------------------SCHHHHHHHHHHTCCSSSCEEECHHHHHHH
T ss_pred CCeeeeeeCCCcCCHHHHHHh-----------------------------cCchHHHHHHHhcCCCCCCCccCHHHHHHH
Confidence 899999999999999999997 8999999999998 6789999999988763
Q ss_pred -cCCchHHHHHHHHHHHHHHHhhcCChhhhhhcCCCCCCCHHHHHHHHHHHhhHHHHHHHHHhcChHHHHHHHHHHHHHH
Q 010356 424 -KGNTAVYLLYAHARICSIIRKSGKDIEELKKTGSLVLDHADERALGLHLLHFSEVIEEALTNLLPNVVCEYLYNLSEYF 502 (512)
Q Consensus 424 -~~~~g~ylqY~~aR~~sil~k~~~~~~~~~~~~~~~l~~~~e~~L~~~l~~~~~~v~~a~~~~~p~~l~~yl~~La~~f 502 (512)
+.+...-+.+..+|+.+++.+...+. ++. ...+ ++.+++|+..+..+++.+.+++++++++.+++.+++++...
T Consensus 392 ~n~~l~~~l~N~~~R~~~~~~k~~~~~--~~~--~~~~-~~~d~~ll~~l~~~~~~v~~~~e~~~f~~A~~~i~~~~~~~ 466 (722)
T 1rqg_A 392 INEELVNNLGNFVHRALTFVNRYFDGV--VPE--RGEL-DELDREALEEIEKAFKEVGELIMNYRFKDALKRVMSLASFG 466 (722)
T ss_dssp HHHTTTTTHHHHHHHHHHHHHHHSTTB--CCC--CCCC-CHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCC--CCC--cccC-CHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 33333334444579999998864321 111 1122 56788899999999999999999999999999999999999
Q ss_pred hcchhcc
Q 010356 503 TRFYSNC 509 (512)
Q Consensus 503 n~fY~~~ 509 (512)
|.|++.+
T Consensus 467 n~Yi~~~ 473 (722)
T 1rqg_A 467 NRYFDHK 473 (722)
T ss_dssp HHHHHTT
T ss_pred HHHHHhc
Confidence 9998764
No 16
>3u1f_A Methionyl-tRNA synthetase; aminoacyl-tRNA synthetase, AARS, metrs, parasite, protein-IN complex, rossmann-fold, translation; HET: 392; 2.20A {Trypanosoma brucei} PDB: 3u1e_A* 3u1g_A* 3u20_A* 4eg1_A 4eg3_A* 4eg6_A* 4eg8_A* 4eg5_A* 3tun_A* 3u1z_A* 4eg4_A* 4eg7_A* 4ega_A*
Probab=99.97 E-value=1.1e-30 Score=283.43 Aligned_cols=330 Identities=16% Similarity=0.129 Sum_probs=229.5
Q ss_pred CCCceEEEEeeCCCCCCCCcccchhhhhHHHHHHHHHHHCCCeEEEeeccCccchHHHHHHHHHHhhCCCCCccCcccHH
Q 010356 82 LRVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIG 161 (512)
Q Consensus 82 ~~~~~v~Ve~~spNp~~~lHvGH~R~~iiGD~lar~l~~~G~~V~~~~~i~D~G~qi~~l~~~~~~~~~~~~~~~~~~i~ 161 (512)
...++..|.-.=|+|||++||||+|+.++.|+++|++|++||+|.++...+|+|.+|..-+
T Consensus 6 ~~~k~f~Ittp~pY~nG~lHiGHa~~~~~~Dii~Ry~r~~G~~v~~v~G~D~hG~~ie~~a------------------- 66 (542)
T 3u1f_A 6 KVEKVFFVTSPIYYVNAAPHIGHVYSTLITDVIGRYHRVKGERVFALTGTDEHGQKVAEAA------------------- 66 (542)
T ss_dssp -CCCCEEEEEEEEECSSCCCHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEECCSHHHHHHH-------------------
T ss_pred CCCCCEEEeCCCCCCCCchhhHHHHHHHHHHHHHHHHHhcCCCccccCccCcChHHHHHHH-------------------
Confidence 3467788988889999999999999999999999999999999999999999998764321
Q ss_pred HHHHHHHHHhcccCCChHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHcCCeEeeecc---ccccCchHH
Q 010356 162 ELQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKGE---SFYNPYIPG 238 (512)
Q Consensus 162 ~l~~~y~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~L~I~f~~~~e---s~~~~~v~~ 238 (512)
.+. +.+| +++++.+.+.|++++++|||.+||+.. ..|...+++
T Consensus 67 ---------~k~-g~~~------------------------~e~~~~~~~~~~~~~~~lgi~~D~~~~T~~~~~~~~v~~ 112 (542)
T 3u1f_A 67 ---------KQK-QVSP------------------------YDFTTAVAGEFKKCFEQMDYSIDYFIRTTNEQHKAVVKE 112 (542)
T ss_dssp ---------HHT-TSCH------------------------HHHHHHHHHHHHHHHHHHTCCCSEEEETTCHHHHHHHHH
T ss_pred ---------HHc-CCCH------------------------HHHHHHHHHHHHHHHHHhCCccCcCccCCCHHHHHHHHH
Confidence 110 1111 356888889999999999999988654 357788999
Q ss_pred HHHHHHhCCCeeeeCceEEEEec-----------------CC-------CCCeEEEec----------------------
Q 010356 239 VIDELSKQGLVEESQGARVIFIE-----------------GV-------NIPLIIVKS---------------------- 272 (512)
Q Consensus 239 ~~~~L~~~g~~~~~dGa~~~~~~-----------------g~-------~~d~vl~ks---------------------- 272 (512)
++.+|.++|++|+..+.+++... |+ .+..+..++
T Consensus 113 ~f~~L~~~G~iy~~~~~v~~~~~~~~~l~d~~v~~~~~~~g~~~~~~~~sg~~ve~~~~~~~f~~l~~~~~~l~~~~~~~ 192 (542)
T 3u1f_A 113 LWTKLEQKGDIYLGRYEGWYSISDESFLTPQNITDGVDKDGNPCKVSLESGHVVTWVSEENYMFRLSAFRERLLEWYHAN 192 (542)
T ss_dssp HHHHHHHTTCEEEEEEEEEEETTTTEEECGGGEEEEECTTSCEEEEETTTCCBEEEEEEEEEEECGGGGHHHHHHHHHHC
T ss_pred HHHHHhhcCcEEecceeEEeeccCcccchhhhhhccccccCccccccCCCCCcceeeccccceecchhHHHHHHHHHhhc
Confidence 99999999999987655444221 00 000111000
Q ss_pred ----------------------C-------------Ccc--------ccccch--HHHHHH-------------------
Q 010356 273 ----------------------D-------------GGF--------NYASTD--LAALWY------------------- 288 (512)
Q Consensus 273 ----------------------D-------------G~~--------~Y~~~D--iA~~~~------------------- 288 (512)
| |.| .|..-| +++..-
T Consensus 193 ~~~~~P~~~~~~~~~~~~~~l~Dw~ISRq~~~~~~WGipiP~~~~~~~~vw~da~~~~~~~~~~~~~~~g~~~~~~d~~~ 272 (542)
T 3u1f_A 193 PGCIVPEFRRREVIRAVEKGLPDLSVSRARATLHNWAIPVPGNPDHXVYVWLDALTNYLTGSRLRVDESGKEVSLVDDFN 272 (542)
T ss_dssp TTSEESHHHHHHHHHHHHHCCCCEECEEEGGGGTTCSCEETTEEEEEECHHHHHHTHHHHHHTEEECTTSCEEEECSSGG
T ss_pred ccccCCchhhHhHhhhhhccccccCccccccCcCCCCCccCCCcCeeeeeeeccchhhhhhhhccccccCCcccccchhh
Confidence 0 000 011111 000000
Q ss_pred HHhhcCCceEEEEeeCcccchHHHHH-HHHHHcCCCCCCCCCCCceEEEEeEEEECCCCcceeeecCCeecHHHHHHHHH
Q 010356 289 RLNEEKAEWIIYVTDVGQQLHFDMVF-SAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAK 367 (512)
Q Consensus 289 k~~~~~~d~~iyV~g~~q~~hf~~l~-~~~~~~g~~~~~~~~~~~~~Hv~~g~V~~~~g~kmSkR~G~~v~l~dll~~~~ 367 (512)
....+.. .+++.|.|+..++...+ +.+.++|.. +...+.|. |+|. .+|+|||||+||+|++.|++++
T Consensus 273 ~~~~~p~--d~~~~G~D~~~fh~~~~~a~l~~~g~~-----~~~~v~~h--g~l~-~~G~KMSKSlGNvi~p~~~i~~-- 340 (542)
T 3u1f_A 273 ELERFPA--DVHVIGKDILKFHAIYWPAFLLSAGLP-----LPKKIVAH--GWWT-KDRKKISKSLGNVFDPVEKAEE-- 340 (542)
T ss_dssp GTTCCSC--SEEEEEGGGHHHHHTHHHHHHHHHTCC-----CCSCEEEE--CCCE-ETTBCCBTTTTBCCCHHHHHHH--
T ss_pred hhcCCcc--eEEEecccccccccchhHHHHHhhccc-----ccceeccc--ccee-cCCceeccccCCCCChhHHHhh--
Confidence 0000111 26677888754322222 445566873 34566655 7776 5799999999999999999998
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHhhchhhHHHHhhcc-CCCCCccccccccccc-cCCchHHHHHHHHHHHHHHHhh
Q 010356 368 NRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKN-NRLTNYTFSFDQMLND-KGNTAVYLLYAHARICSIIRKS 445 (512)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~airy~~L~~-~~~~~~~Fd~~~~~~~-~~~~g~ylqY~~aR~~sil~k~ 445 (512)
+|+|++|||+++. ...+|++|+++.+.+. +++..+-+.+...|+.+...+.
T Consensus 341 ---------------------------ygaD~lR~~l~~~~~~~~d~~fs~~~~~~~~n~~l~n~l~N~~~r~~~~~~~~ 393 (542)
T 3u1f_A 341 ---------------------------FGYDALKYFLLRESGFSDDGDYSDKNMIARLNGELADTLGNLVMRCTSAKINV 393 (542)
T ss_dssp ---------------------------HCHHHHHHHHHHHCCTTSCCEECHHHHHHHHHHTTTTTHHHHHHHHHCTTTST
T ss_pred ---------------------------cCchHHHHHHHhcCcccccccccHHHHHHHhhhHHHHHHHHHHHHHHHhhhcc
Confidence 7999999999985 4689999999988653 4444444555556776544332
Q ss_pred cCChhhhhhcCCCCCCCHHHHHHHHHHHhhHHHHHHHHHhcChHHHHHHHHHHHHHHhcchhcc
Q 010356 446 GKDIEELKKTGSLVLDHADERALGLHLLHFSEVIEEALTNLLPNVVCEYLYNLSEYFTRFYSNC 509 (512)
Q Consensus 446 ~~~~~~~~~~~~~~l~~~~e~~L~~~l~~~~~~v~~a~~~~~p~~l~~yl~~La~~fn~fY~~~ 509 (512)
.... +. ... .++.++.++..+....+.+.+++++++++.+++.+++++...|.|++..
T Consensus 394 ~~~~---~~--~~~-~~~~d~~il~~l~~~~~~~~~~~~~~~~~~a~~~i~~~~~~~n~Y~~~~ 451 (542)
T 3u1f_A 394 NGEW---PS--PAA-YTEEDESLIQLIKDLPGTADHYYLIPDIQKAIIAVFDVLRAINAYVTDM 451 (542)
T ss_dssp TSBC---CC--CCC-CCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCC---Cc--cch-hhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 2111 11 112 2567888999999999999999999999999999999999999998653
No 17
>1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino acid, aminoacylation, trnaLeu, structural genomics; 2.05A {Pyrococcus horikoshii}
Probab=99.95 E-value=2e-26 Score=260.80 Aligned_cols=137 Identities=10% Similarity=0.130 Sum_probs=108.1
Q ss_pred CCCceEEEEeEEEECCCCcceeeecCCeecHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhchhhHHHHhh-cc
Q 010356 329 TYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDL-KN 407 (512)
Q Consensus 329 ~~~~~~Hv~~g~V~~~~g~kmSkR~G~~v~l~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~airy~~L-~~ 407 (512)
++..+.|. |+|+. +|+|||||+||+|++.|++++ +|+|++|||++ +.
T Consensus 634 ~pk~v~~~--G~v~~-~G~KMSKS~GNvv~p~dli~~-----------------------------yGaDalR~~ll~~~ 681 (810)
T 1wkb_A 634 WPKGIAVN--GFGTL-EGQKMSKSKGNVLNFIDAIEE-----------------------------NGADVVRLYIMSLA 681 (810)
T ss_dssp SCCEEEEE--CCEEE-TTBCCCTTTTCCCBHHHHHHH-----------------------------HCHHHHHHHHHHHC
T ss_pred cccEEEEE--eEEEe-CCeehhhcCCCcCCHHHHHHH-----------------------------cChHHHHHHHHhcC
Confidence 44567665 88885 799999999999999999998 79999999998 56
Q ss_pred CCCCCccccccccccccCCchHHHHHHHHHHHHHHHhhcCChhhhhhcCCCCCCCHHHHHHHHHHHhhHHHHHHHHHhcC
Q 010356 408 NRLTNYTFSFDQMLNDKGNTAVYLLYAHARICSIIRKSGKDIEELKKTGSLVLDHADERALGLHLLHFSEVIEEALTNLL 487 (512)
Q Consensus 408 ~~~~~~~Fd~~~~~~~~~~~g~ylqY~~aR~~sil~k~~~~~~~~~~~~~~~l~~~~e~~L~~~l~~~~~~v~~a~~~~~ 487 (512)
.+.++++||++.+... ...+.|+.+++++...... +. ... .++.++.|+..+..+.+.+.+++++++
T Consensus 682 ~~~~d~~fs~~~~~~~--------~~~l~rl~n~~~~~~~~~~--~~--~~~-~~~~d~~ll~~l~~~~~~v~~~~~~~~ 748 (810)
T 1wkb_A 682 EHDSDFDWRRKEVGKL--------RKQIERFYELISQFAEYEV--KG--NVE-LKDIDRWMLHRLNKAIKETTNALEEFR 748 (810)
T ss_dssp CTTCCEEECHHHHHHH--------HHHHHHHHHHHHHHHTCCC--CS--CCC-CCHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCcccCHHHHHHH--------HHHHHHHHHHHHHHHhccC--cc--ccc-CCHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 7899999999876432 2345788888887632110 10 111 256788899999999999999999999
Q ss_pred hHHHHHHH-HHHHHHHhcchhccc
Q 010356 488 PNVVCEYL-YNLSEYFTRFYSNCQ 510 (512)
Q Consensus 488 p~~l~~yl-~~La~~fn~fY~~~~ 510 (512)
++.++..+ +.++..+|.|++.++
T Consensus 749 ~~~a~~~~~~~l~~~~n~yi~~~k 772 (810)
T 1wkb_A 749 TRTAVQWAFYSIMNDLRWYLRRTE 772 (810)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999865 699999998887653
No 18
>1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics; 2.50A {Thermus thermophilus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A*
Probab=99.94 E-value=7.8e-26 Score=255.81 Aligned_cols=169 Identities=15% Similarity=0.195 Sum_probs=117.6
Q ss_pred EEEeeCcccc-hHHHHHHHHHH-cCCCCCCCCCCCceEEEEeEEEECCCCcceeeecCCeecHHHHHHHHHHHHHHHHHH
Q 010356 299 IYVTDVGQQL-HFDMVFSAAKR-AGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAKNRSKAVLIE 376 (512)
Q Consensus 299 iyV~g~~q~~-hf~~l~~~~~~-~g~~~~~~~~~~~~~Hv~~g~V~~~~g~kmSkR~G~~v~l~dll~~~~~~~~~~~~~ 376 (512)
+|+.|.||.. ||..+..+..+ .|.. ++...+. +|+|++.+|+|||||+||+|++.|++++
T Consensus 547 l~~~G~D~~r~w~~~~~~~~~~~~~~~----pf~~v~~---hg~vl~~~G~KMSKS~GNvV~p~dli~~----------- 608 (821)
T 1ile_A 547 FIAEGIDQTRGWFNSLHQLGVMLFGSI----AFKNVIC---HGLILDEKGQKMSKSKGNVVDPWDIIRK----------- 608 (821)
T ss_dssp BEEEEGGGGGTHHHHHHHHHHHHHSSC----SBSEEEE---ECCEECTTSSCCCTTTTCCCCHHHHHTT-----------
T ss_pred cccchhhhhccHHHHHHHHHHHhcCCC----CcceEEE---EeeEECCCCCCCCccCCCCCCHHHHHHH-----------
Confidence 6778888864 55555444333 3543 3333444 4889888999999999999999999997
Q ss_pred hcCCCCCCHHHHHHHHHhhchhhHHHHhhccC-CCCCccccccccccccCCchHHHHHHHHHHHHHHHhhcCChhhhhhc
Q 010356 377 RGKDKEWTEEELEQTAEAVGYGAAKYFDLKNN-RLTNYTFSFDQMLNDKGNTAVYLLYAHARICSIIRKSGKDIEELKKT 455 (512)
Q Consensus 377 ~~~~~~~~~~~~~~~a~~~~~~airy~~L~~~-~~~~~~Fd~~~~~~~~~~~g~ylqY~~aR~~sil~k~~~~~~~~~~~ 455 (512)
+|+|++|||+++.. +.++++||++.+.....+...-+.++..|+.......+..... ..
T Consensus 609 ------------------yGaDalR~~ll~~~~~~~d~~fs~~~l~~~~~~~~~kl~N~~~~~~~~~~~~~~~~~~--~~ 668 (821)
T 1ile_A 609 ------------------FGADALRWYIYVSAPPEADRRFGPNLVRETVRDYFLTLWNVYSFFVTYANLDRPDLKN--PP 668 (821)
T ss_dssp ------------------TCHHHHHHHHHHHSCSSSCEECCHHHHHHHHHHTHHHHHHHHHHHHHHHHHHCCCTTS--CC
T ss_pred ------------------hCHHHHHHHHHhCCCCCCCcEecHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccc--cc
Confidence 89999999999986 7999999999886632222333434444432211111111000 00
Q ss_pred CCCCCCCHHHHHHHHHHHhhHHHHHHHHHhcChHHHHHHHHHHH-HHHhcch
Q 010356 456 GSLVLDHADERALGLHLLHFSEVIEEALTNLLPNVVCEYLYNLS-EYFTRFY 506 (512)
Q Consensus 456 ~~~~l~~~~e~~L~~~l~~~~~~v~~a~~~~~p~~l~~yl~~La-~~fn~fY 506 (512)
.... .++.++.|+..+..+++.+.+++++++++.++..+++++ ..++++|
T Consensus 669 ~~~~-~~~~d~~ll~~l~~~~~~v~~a~e~~~f~~A~~~l~~f~~~~~~n~Y 719 (821)
T 1ile_A 669 PPEK-RPEMDRWLLARMQDLIQRVTEALEAYDPTTSARALRDFVVEDLSQWY 719 (821)
T ss_dssp CSTT-SCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSTTT
T ss_pred cccc-CCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHH
Confidence 0111 256778899999999999999999999999999999999 6666666
No 19
>2o5r_A Glutamyl-tRNA synthetase 1; TM1351, EC 6.1.1.17, glutamate-T ligase 1, glurs 1, structural genomics, joint center for ST genomics, JCSG; 2.34A {Thermotoga maritima}
Probab=99.94 E-value=2.6e-26 Score=243.15 Aligned_cols=150 Identities=16% Similarity=0.151 Sum_probs=111.6
Q ss_pred CceEEEEecCCCCCeEEEecCCccccc-cchHHHHHHHHhhcCCceEEEEeeCcccchHHHHHHHHHHcCCCCCCCCCCC
Q 010356 253 QGARVIFIEGVNIPLIIVKSDGGFNYA-STDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYP 331 (512)
Q Consensus 253 dGa~~~~~~g~~~d~vl~ksDG~~~Y~-~~DiA~~~~k~~~~~~d~~iyV~g~~q~~hf~~l~~~~~~~g~~~~~~~~~~ 331 (512)
.|++++..+ .-.|+||+|+||.|||. +.++..|. .+.+++ |+|.||..+++++..+++++|+. .+
T Consensus 182 ~G~~~~~~~-~~~D~Vl~RsDG~ptY~~a~vvDD~~-----~githv--irG~D~~~~t~~q~~l~~aLG~~------~p 247 (481)
T 2o5r_A 182 KGEVVFKTG-AIGDFVIMRSNGLPTYNFACVVDDML-----MEITHV--IRGDDHLSNTLRQLALYEAFEKA------PP 247 (481)
T ss_dssp TEEEEECTT-SSCBEEEECTTSCBCHHHHHHHHHHH-----TTCSEE--EEEGGGHHHHHHHHHHHHHTTCC------CC
T ss_pred cceeEeccc-cCCCeEEEccCCCcchhhHHHHHHHh-----CCCCeE--EEChhHHHhHHHHHHHHHHcCCC------CC
Confidence 355555433 22589999999999994 44444333 467898 49999999999999999999984 25
Q ss_pred ceEEEEeEEEECCCCcceeeecCCeecHHHHHHHHH--HHHHHHHHHhcCCCCCCHHHHHHHHHhhc-hhhHHHHhhccC
Q 010356 332 KASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAK--NRSKAVLIERGKDKEWTEEELEQTAEAVG-YGAAKYFDLKNN 408 (512)
Q Consensus 332 ~~~Hv~~g~V~~~~g~kmSkR~G~~v~l~dll~~~~--~~~~~~~~~~~~~~~~~~~~~~~~a~~~~-~~airy~~L~~~ 408 (512)
.+.|+++ +++.+|+|||||+|++ ++++++++++ +...+.+.. .+|++....+ .+. .+++++|+++..
T Consensus 248 ~~~H~pl--il~~~G~KLSKR~g~~-~l~~~~~~G~~peal~~~l~~----lG~s~~~~~e---~~~~~e~i~~f~l~~~ 317 (481)
T 2o5r_A 248 VFAHVST--ILGPDGKKLSKRHGAT-SVEAFRDMGYLPEALVNYLAL----LGWSHPEGKE---LLTLEELISSFSLDRL 317 (481)
T ss_dssp EEEEECC--EECTTSSBCCGGGSCC-BHHHHHHHTCCHHHHHHHHHT----SSBCCTTCCC---CCCHHHHHHHCCGGGB
T ss_pred eEEEEee--EECCCCCcccCcCCcc-cHHHHHHCCCCHHHHHHHHHH----hCCCCCcccc---cCCHHHHHHhCChhhC
Confidence 7999854 7778999999999998 9999999865 345555553 3343200000 122 368999999999
Q ss_pred CCCCccccccccccccCC
Q 010356 409 RLTNYTFSFDQMLNDKGN 426 (512)
Q Consensus 409 ~~~~~~Fd~~~~~~~~~~ 426 (512)
+.++..|||+++.++|+.
T Consensus 318 ~~~~~~fd~~kl~~~n~~ 335 (481)
T 2o5r_A 318 SPNPAIFDPQKLKWMNGY 335 (481)
T ss_dssp CSSCEECCHHHHHHHHHH
T ss_pred CccCcccChHHhhhhCHH
Confidence 999999999999998863
No 20
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A
Probab=99.94 E-value=5.3e-25 Score=248.30 Aligned_cols=156 Identities=15% Similarity=0.114 Sum_probs=110.2
Q ss_pred CHHHHHHHHHHHHHcCCCCCCCc-CCCceEEEEeeCCCCCCCCcccchhhhhHHHHHHHHHHHCCCeEEEeeccCccchH
Q 010356 59 SKNWMAKNIQKMLVDGIETWAPK-LRVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQ 137 (512)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~Ve~~spNp~~~lHvGH~R~~iiGD~lar~l~~~G~~V~~~~~i~D~G~q 137 (512)
++..+.....+..++ ....... ...++..|...-|||||.|||||+++.+++|+++|+.|++||+|.+....+.+|.+
T Consensus 8 ~~~~~E~~~~~~W~~-~~f~~~~~~~~~~f~i~~ppPy~nG~lHiGHa~~~~l~Dii~Ry~rm~G~~vl~~~G~D~~Glp 86 (862)
T 1gax_A 8 DPKSVEPKWAEKWAK-NPFVANPKSGKPPFVIFMPPPNVTGSLHMGHALDNSLQDALIRYKRMRGFEAVWLPGTDHAGIA 86 (862)
T ss_dssp CGGGTHHHHHHHHHH-SCCCCCTTCCSCEEEEECCCCBSSSCCCHHHHHHHHHHHHHHHHHHTTTSEEEEECEEBCCTHH
T ss_pred ChHHHHHHHHHHHHh-CCCccCcCCCCCcEEEEcCCCCCCCCcchhhhHHHHHHHHHHHHHHhCCCccccccccCCCCcH
Confidence 344444445555544 3221111 23567899899999999999999999999999999999999999999999999987
Q ss_pred HHHHHHHHHhhCCCCCccCcccHHHHHHHHHHHhcccCCChHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHH
Q 010356 138 FGMLIEYLFEKFPNSEDANETAIGELQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVY 217 (512)
Q Consensus 138 i~~l~~~~~~~~~~~~~~~~~~i~~l~~~y~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~ 217 (512)
+...+. +..... +.... .+. .++| .+.++++++.+...+++.+
T Consensus 87 ~e~~ve---k~l~~~----g~~~~-----------~~~-~~~f------------------~~~~~~~~~~~~~~~~~q~ 129 (862)
T 1gax_A 87 TQVVVE---RLLLKE----GKTRH-----------DLG-REKF------------------LERVWQWKEESGGTILKQL 129 (862)
T ss_dssp HHHHHH---TTTTTT----TSCCS-----------CCC-TTHH------------------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH---HHHHHc----CCChH-----------HcC-HHHH------------------HHHHHHHHHHHHHHHHHHH
Confidence 764331 111110 00000 000 1223 3334456788889999999
Q ss_pred HHcCCeEeeec-----cccccCchHHHHHHHHhCCCeeee
Q 010356 218 KRLRVDLEEKG-----ESFYNPYIPGVIDELSKQGLVEES 252 (512)
Q Consensus 218 ~~L~I~f~~~~-----es~~~~~v~~~~~~L~~~g~~~~~ 252 (512)
++||+.+||.. +..|...+++++.+|.++|++|+.
T Consensus 130 ~rlG~s~Dw~r~~~T~d~~~~~~v~~~F~~L~~kGliYrg 169 (862)
T 1gax_A 130 KRLGASADWSREAFTMDEKRSRAVRYAFSRYYHEGLAYRA 169 (862)
T ss_dssp HHTTCCCCGGGCEETTSHHHHHHHHHHHHHHHTTSSEEEE
T ss_pred HHhCccccCCCCcccCCHHHHHHHHHHHHHHHHCCCEEec
Confidence 99999999754 345677899999999999999974
No 21
>1irx_A Lysyl-tRNA synthetase; beta sandwitch, zinc-binding structure, rossmann fold, alpha-helix CAGE; 2.60A {Pyrococcus horikoshii} SCOP: a.97.1.2 c.26.1.1
Probab=99.93 E-value=4.5e-27 Score=253.36 Aligned_cols=247 Identities=13% Similarity=0.091 Sum_probs=158.9
Q ss_pred eCCCCCCCCcccchhhhhHHHHHHHHHHHCCCeEEEeeccCccc--hHH-HHHHHHHHhhCCCCCccCcccHHHHHHHHH
Q 010356 92 SSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWG--TQF-GMLIEYLFEKFPNSEDANETAIGELQEFYR 168 (512)
Q Consensus 92 ~spNp~~~lHvGH~R~~iiGD~lar~l~~~G~~V~~~~~i~D~G--~qi-~~l~~~~~~~~~~~~~~~~~~i~~l~~~y~ 168 (512)
|+|||||++||||+|+++++|+++|+|+++||+|.++.+++|+| +++ ..+.... +.+.+.++.
T Consensus 26 tgPsPtG~lHIGhaR~al~~D~laR~l~~~g~~v~fi~~idD~d~~rkip~~~~~a~-------~~~~G~~~~------- 91 (523)
T 1irx_A 26 SGITPSGYVHVGNFRELFTAYIVGHALRDKGYEVRHIHMWDDYDRFRKVPRNVPQEW-------KDYLGMPIS------- 91 (523)
T ss_dssp EEECCSSCCCHHHHHHHHHHHHHHHHHHTTTCEEEEEEEECTTSBCCCCCSSSCGGG-------GGGTTSBGG-------
T ss_pred CCCCCCCCcccCCcHHHHHHHHHHHHHHHcCCCEEEEEeeCCcchhhhhhhHHHHHH-------HHHcCCCcc-------
Confidence 37999999999999999999999999999999999999999998 433 0000000 000011110
Q ss_pred HHhcccCCChHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHcCCeEeeecccc-ccC-chHHHHHHHHhC
Q 010356 169 RSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKGESF-YNP-YIPGVIDELSKQ 246 (512)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~L~I~f~~~~es~-~~~-~v~~~~~~L~~~ 246 (512)
+-.||. ..|+.+++.+.+.|.++|+.|||.+|.+++|. |.+ .+.+++++|.++
T Consensus 92 -----------------------~~p~p~--~~~~~~~~~~~~~~~~~l~~Lgi~~D~~~~se~~~~g~~~~~i~~L~~~ 146 (523)
T 1irx_A 92 -----------------------EVPDPW--GCHESYAEHFMRKFEEEVEKLGIEVDLLYASELYKRGEYSEEIRLAFEK 146 (523)
T ss_dssp -----------------------GSCCTT--SSSSSHHHHHHHHHHHHHHTTTCCCEEEEHHHHHHTTTTHHHHHHHHHT
T ss_pred -----------------------cCCcch--hhHHHHHHHHHHHHHHHHHHcCCCceEEechhhccchHHHHHHHHHHHc
Confidence 111221 12456788999999999999999997557776 766 899999999999
Q ss_pred C----------------CeeeeCceEEEEec--CCC-------------CCeEEEecCCccccccc-----------hHH
Q 010356 247 G----------------LVEESQGARVIFIE--GVN-------------IPLIIVKSDGGFNYAST-----------DLA 284 (512)
Q Consensus 247 g----------------~~~~~dGa~~~~~~--g~~-------------~d~vl~ksDG~~~Y~~~-----------DiA 284 (512)
| .+|..+ |+... +.. .+.-....+|.+++... |++
T Consensus 147 G~~iy~~~~~~~g~~~~~~y~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~g~~~~~d~~~G~g~~~w~~d~~ 223 (523)
T 1irx_A 147 RDKIMEILNKYREIAKQPPLPEN---WWPAMVYCPEHRREAEIIEWDGGWKVKYKCPEGHEGWVDIRSGNVKLRWRVDWP 223 (523)
T ss_dssp HHHHHHHHHHHHHHTTCCCCCTT---CCSEEEECTTTCCEECEEEECSSSCEEECCSSSCCCEECTTSSCEEECHHHHHH
T ss_pred hHHHHHHHHhhccccccccccCC---ceeccccchhhCCcccccccCCCCceeeeecCCCccccCCcCCCCCCCCCcchH
Confidence 9 666532 33221 100 01001112344433221 222
Q ss_pred HHHHHHhhcCCceEEEEeeCcccc-h--HHHHHHHH-HHcCCCCCCCCCCCceEEEEeEEEECC-CCcceeeecCCeecH
Q 010356 285 ALWYRLNEEKAEWIIYVTDVGQQL-H--FDMVFSAA-KRAGWLSADDSTYPKASHVGFGLVLGE-DGKRLRTRFSEVVRL 359 (512)
Q Consensus 285 ~~~~k~~~~~~d~~iyV~g~~q~~-h--f~~l~~~~-~~~g~~~~~~~~~~~~~Hv~~g~V~~~-~g~kmSkR~G~~v~l 359 (512)
+.++ .++.+|++.|.||.. | .++...++ +++|+.+ +.+.|+ |+|++. +|+|||||+||+|++
T Consensus 224 ~~~~-----~l~~~vd~~G~Dh~~~h~s~~~~~~i~~~alG~~~------p~~~h~--~~i~~~g~g~KmSKs~Gn~i~~ 290 (523)
T 1irx_A 224 MRWS-----HFGVDFEPAGKDHLVAGSSYDTGKEIIKEVYGKEA------PLSLMY--EFVGIKGQKGKMSGSKGNVILL 290 (523)
T ss_dssp HHHH-----HSCCCBCCEEHHHHSTTSHHHHHHHHHHHHHCCCC------CBCCEE--CCEEESCC---------CCCCH
T ss_pred hhHH-----HcCCCCcCCCcCccCCCcchhhHHHHHHHHhCCCC------CeEEEE--EEEEeCCCCCCCCCcCCCCCCH
Confidence 2221 223456688999876 2 22222333 6889842 367887 778876 699999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhchhhHHHHhhccCCCCCcccccc-cccc
Q 010356 360 VDLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNRLTNYTFSFD-QMLN 422 (512)
Q Consensus 360 ~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~airy~~L~~~~~~~~~Fd~~-~~~~ 422 (512)
.|++++ ++++|+|||+++..+.++..|+++ .+.+
T Consensus 291 ~~~~~~-----------------------------~~pdalR~~l~~~~~~~~~~fs~~~~l~~ 325 (523)
T 1irx_A 291 SDLYEV-----------------------------LEPGLVRFIYARHRPNKEIKIDLGLGILN 325 (523)
T ss_dssp HHHHTT-----------------------------SCHHHHHHHHHSSCTTSCEEECCSTTHHH
T ss_pred HHHHHH-----------------------------cCHHHHHHHHHhcCCCCCceeCcchhHHH
Confidence 999987 799999999999899999999999 5543
No 22
>1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing tRNA synthetase, double-sieve, ligase/RNA, mupiroci; HET: MRC; 2.20A {Staphylococcus aureus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1qu2_A* 1qu3_A*
Probab=99.93 E-value=1.9e-25 Score=253.88 Aligned_cols=164 Identities=16% Similarity=0.181 Sum_probs=123.1
Q ss_pred EEEeeCccc-chHHHHHH-HHHHcCCCCCCCCCCCceEEEEeEEEECCCCcceeeecCCeecHHHHHHHHHHHHHHHHHH
Q 010356 299 IYVTDVGQQ-LHFDMVFS-AAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAKNRSKAVLIE 376 (512)
Q Consensus 299 iyV~g~~q~-~hf~~l~~-~~~~~g~~~~~~~~~~~~~Hv~~g~V~~~~g~kmSkR~G~~v~l~dll~~~~~~~~~~~~~ 376 (512)
+|+.|.||. .+|..+.. .....|.. |+..-+.| |||++.+|+|||||+||+|++.|++++
T Consensus 551 l~~~G~D~~r~wf~~~l~~s~~~~g~~----Pfk~v~~h---G~V~d~~G~KMSKSlGNvV~P~dvi~~----------- 612 (917)
T 1ffy_A 551 MYLEGSDQYRGWFNSSITTSVATRGVS----PYKFLLSH---GFVMDGEGKKMSKSLGNVIVPDQVVKQ----------- 612 (917)
T ss_dssp EEEEEGGGGTTHHHHHHHHHHHHHSSC----SBSEEEEE---CCEECTTSCCCCSSSSCCCCHHHHHHH-----------
T ss_pred EEEEEecccccHHHHHHHHHHHhhCCC----cccceeEe---eeEEcCCCcCcccccCCcCChHHHHHh-----------
Confidence 788999986 47776633 33344653 33333433 889988999999999999999999998
Q ss_pred hcCCCCCCHHHHHHHHHhhchhhHHHHhhccCCCCCccccccccccccCCchHHHHHHHHHHHHHHHhhcC---Chhh-h
Q 010356 377 RGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNRLTNYTFSFDQMLNDKGNTAVYLLYAHARICSIIRKSGK---DIEE-L 452 (512)
Q Consensus 377 ~~~~~~~~~~~~~~~a~~~~~~airy~~L~~~~~~~~~Fd~~~~~~~~~~~g~ylqY~~aR~~sil~k~~~---~~~~-~ 452 (512)
+|+|++|||+++..+.++++||++.+.... .++.|+.+++|.... +... .
T Consensus 613 ------------------yGaDalR~~lls~~~~~D~~fs~~~l~~~~--------~~~~kl~n~~r~~l~nl~~~~~~~ 666 (917)
T 1ffy_A 613 ------------------KGADIARLWVSSTDYLADVRISDEILKQTS--------DDYRKIRNTLRFMLGNINDFNPDT 666 (917)
T ss_dssp ------------------TCHHHHHHHHHTSCTTSCEECCHHHHHHHH--------HHHHHHHHHHHHHHHTSTTCCHHH
T ss_pred ------------------CCHHHHHHHHhccCCCCCcccCHHHHHHHH--------HHHHHHHHHHHHHHhhhhccCccc
Confidence 899999999999888999999999876432 246677777665421 1100 0
Q ss_pred hhcCCCCCCCHHHHHHHHHHHhhHHHHHHHHHhcChHHHHHHHHHHHH-HHhcchh
Q 010356 453 KKTGSLVLDHADERALGLHLLHFSEVIEEALTNLLPNVVCEYLYNLSE-YFTRFYS 507 (512)
Q Consensus 453 ~~~~~~~l~~~~e~~L~~~l~~~~~~v~~a~~~~~p~~l~~yl~~La~-~fn~fY~ 507 (512)
...+...+ ++.++.|+..+.++++.+.+++++++++.++.++++++. .+++||-
T Consensus 667 ~~v~~~~l-~~~D~~il~~l~~~~~~v~~a~e~~~f~~a~~~l~~f~~~~l~~~Yl 721 (917)
T 1ffy_A 667 DSIPESEL-LEVDRYLLNRLREFTASTINNYENFDYLNIYQEVQNFINVELSNFYL 721 (917)
T ss_dssp HCCCGGGS-CHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCCCCCHH
T ss_pred ccCCcccc-CHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHH
Confidence 00011122 567889999999999999999999999999999999998 7888873
No 23
>2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus} PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A*
Probab=99.93 E-value=2.2e-24 Score=244.15 Aligned_cols=123 Identities=13% Similarity=0.051 Sum_probs=98.3
Q ss_pred cceeeecCCeecHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhchhhHHHHhhc-cCCCCCccccccccccccC
Q 010356 347 KRLRTRFSEVVRLVDLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLK-NNRLTNYTFSFDQMLNDKG 425 (512)
Q Consensus 347 ~kmSkR~G~~v~l~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~airy~~L~-~~~~~~~~Fd~~~~~~~~~ 425 (512)
+|||||+||+|++.|++++ +|+|++|||+++ ..+.++++||++.+...
T Consensus 636 ~KMSKSkGNvVdP~diI~~-----------------------------yGADalRl~ll~~~~~~~D~~fs~~~v~~~-- 684 (878)
T 2v0c_A 636 AVMSKSKGNGVMVGPFVKE-----------------------------QGADIARITILFAAPPENEMVWTEEGVQGA-- 684 (878)
T ss_dssp EECSGGGTCCCBHHHHHHH-----------------------------SCHHHHHHHHHHHSCTTSCEEECHHHHHHH--
T ss_pred HHhhccCCCcccHHHHHHH-----------------------------cCccHHHHHHhccCCCCCCceeCHHHHHHH--
Confidence 8999999999999999998 899999999998 67899999999987543
Q ss_pred CchHHHHHHHHHHHHHHHhhcCChh-hhhhcCCCCCCCHHHHHHHHHHHhhHHHHHHHHHhcChHHHHHHHHHHHHHHhc
Q 010356 426 NTAVYLLYAHARICSIIRKSGKDIE-ELKKTGSLVLDHADERALGLHLLHFSEVIEEALTNLLPNVVCEYLYNLSEYFTR 504 (512)
Q Consensus 426 ~~g~ylqY~~aR~~sil~k~~~~~~-~~~~~~~~~l~~~~e~~L~~~l~~~~~~v~~a~~~~~p~~l~~yl~~La~~fn~ 504 (512)
...++|+.++++++..+.. .....+...+ ++.++.|+..+.++.+.+.+++++++++.++..+++++..+|+
T Consensus 685 ------~~~l~Rl~n~~~~~~~~~~~~~~~~~~~~l-~~~D~~ll~~l~~~i~~v~~~~e~~~f~~Ai~~l~~f~~~l~k 757 (878)
T 2v0c_A 685 ------WRFLNRIYRRVAEDREALLETSGVFQAEAL-EGKDRELYGKLHETLKKVTEDLEALRFNTAIAALMEFLNALYE 757 (878)
T ss_dssp ------HHHHHHHHHHHHHHHHHHHTCCCCCCGGGC-CHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred ------HHHHHHHHHHHHHHHhcccccccccCcccC-CHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhh
Confidence 2356788888876421110 0000001122 5678899999999999999999999999999999999999999
Q ss_pred chh
Q 010356 505 FYS 507 (512)
Q Consensus 505 fY~ 507 (512)
|-+
T Consensus 758 ~~~ 760 (878)
T 2v0c_A 758 YRK 760 (878)
T ss_dssp HHH
T ss_pred hcc
Confidence 853
No 24
>3al0_C Glutamyl-tRNA(Gln) amidotransferase subunit C, GL tRNA synthetase 2; protein-RNA complex, ligase-RNA complex; HET: GSU; 3.37A {Thermotoga maritima}
Probab=99.92 E-value=1.7e-25 Score=241.68 Aligned_cols=270 Identities=17% Similarity=0.166 Sum_probs=186.1
Q ss_pred CHHHHHHHHHHHHHcCCCCCCCcCCCceEEEEeeCCCCCCCCcccchhhhhHHHHHHHHHHHCCCeEEEeeccCccchHH
Q 010356 59 SKNWMAKNIQKMLVDGIETWAPKLRVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQF 138 (512)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~Ve~~spNp~~~lHvGH~R~~iiGD~lar~l~~~G~~V~~~~~i~D~G~qi 138 (512)
.+.|+..++.++++.+..+... ..++|++.|+ |||||+|||||+|++++++.+||- +.|-=+.| |.|...
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~RFa-PsPTG~LHiG~artAl~n~l~Ar~--~~G~~ilR---ieDtD~-- 173 (592)
T 3al0_C 104 GSMFITGAFFDILEVGPKKIRR--CFELVRVRFA-PSPTGHLHVGGARTALFNWMFARK--EGGKFILR---IEDTDT-- 173 (592)
T ss_dssp ----------------CCCCCC--CCCCCEEEEC-CCSSSCCBHHHHHHHHHHHHHHHH--HTCEEEEC---BCCCCS--
T ss_pred ChHHHHHHHHHHHHcChhhccc--CCCeEEEEEC-CCCCCCccHHHHHHHHHHHHHHHh--cCCcEEEE---ecCcCh--
Confidence 4567888888888776542211 2357999999 999999999999999999999985 33433333 344110
Q ss_pred HHHHHHHHhhCCCCCccCcccHHHHHHHHHHHhcccCCChHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHH
Q 010356 139 GMLIEYLFEKFPNSEDANETAIGELQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYK 218 (512)
Q Consensus 139 ~~l~~~~~~~~~~~~~~~~~~i~~l~~~y~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~ 218 (512)
. .. ...+.+.+.++++
T Consensus 174 -------------------~----------------r~-----------------------------~~~~~~~I~~dL~ 189 (592)
T 3al0_C 174 -------------------E----------------RS-----------------------------SREYEQQILESLR 189 (592)
T ss_dssp -------------------S----------------SC-----------------------------CHHHHHHHHHHHH
T ss_pred -------------------h----------------hc-----------------------------cHHHHHHHHHHHH
Confidence 0 00 1233456788999
Q ss_pred HcCCeEeee----------ccccccCchHHHHHHHHhCCCeee-----------------------eCc---eEEEEec-
Q 010356 219 RLRVDLEEK----------GESFYNPYIPGVIDELSKQGLVEE-----------------------SQG---ARVIFIE- 261 (512)
Q Consensus 219 ~L~I~f~~~----------~es~~~~~v~~~~~~L~~~g~~~~-----------------------~dG---a~~~~~~- 261 (512)
.||+.+|.. ..|.+.+...+++++|.++|++|. .+| +++++++
T Consensus 190 wlGl~~D~~~~~gG~~gp~~qSer~~~y~~~~~~L~~~G~aY~c~ct~~el~~~~~~~Y~~~~~~~~~g~~~~iR~k~~~ 269 (592)
T 3al0_C 190 WCGLDWDEGPDIGGDFGPYRQSERLEIYREYAEKLVEDKRAYYVVYDKEDPSKELFTTYEYPHEYKEKGHPVTIKFKVLP 269 (592)
T ss_dssp HTTCCCSBBTTTBCTTCCCBSTTCHHHHHHHHHHHHHTTTEEEEEEETTEEEEECCCCSSCCHHHHHTTCCEEEEECCCS
T ss_pred HcCCCCCCCCCcCCCCCCeeeeCCHHHHHHHHHHHHHcCCceEecCCHHHHHhhcCCCCCcHHHHhhcCCCceEEEECCC
Confidence 999998642 345555678899999999999996 346 6777664
Q ss_pred -----------------CCCCCeEEEecCCccccccchHHHHHHHHhhcCCceEEEEeeCcccchHHHHHHHHHHcCCCC
Q 010356 262 -----------------GVNIPLIIVKSDGGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLS 324 (512)
Q Consensus 262 -----------------g~~~d~vl~ksDG~~~Y~~~DiA~~~~k~~~~~~d~~iyV~g~~q~~hf~~l~~~~~~~g~~~ 324 (512)
++..|+||+|+||.|||.... ..+.. ..+.+|+| +|.||..+.++...+++++|+.
T Consensus 270 ~~~~~~D~v~G~~~~~~~~~~D~Vl~R~dg~ptY~~a~---vvDD~-~~githvi--rG~D~~~~t~~q~~l~~alg~~- 342 (592)
T 3al0_C 270 GKTSFEDLLKGYMEFDNSTLEDFIIMKSNGFPTYNFAV---VVDDH-LMRISHVF--RGEDHLSNTPKQLMIYEAFGWE- 342 (592)
T ss_dssp SCCEECCTTTCSEECCSSSSCCEEEECTTSCCCHHHHH---HHHHH-HTTCSBCC--EEGGGGGGHHHHHHHHTTTTCC-
T ss_pred CCceeeecccceeeeccccCCCeEEEcCCCCeehhhHH---HHHHH-hcCCCeEE--EchhhHhCHHHHHHHHHHhCCC-
Confidence 234789999999999998543 34555 46889995 9999999999998899999984
Q ss_pred CCCCCCCceEEEEeEEEECCCCcceeeecCCeecHHHHHHHHH--HHHHHHHHHhcCCCCCCHHHHHHHHHhhch-hhHH
Q 010356 325 ADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAK--NRSKAVLIERGKDKEWTEEELEQTAEAVGY-GAAK 401 (512)
Q Consensus 325 ~~~~~~~~~~Hv~~g~V~~~~g~kmSkR~G~~v~l~dll~~~~--~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~-~air 401 (512)
.+.+.|+ .+|++.+|+|||||+|+ +++.++++.++ +...+++.. .+|++... +.+.. +.++
T Consensus 343 -----~P~~~hl--pli~~~~g~KLSKR~g~-~~l~~~~~~G~~peal~~~l~~----lG~s~~~~----e~~s~~e~i~ 406 (592)
T 3al0_C 343 -----APVFMHI--PLILGSDRTPLSKRHGA-TSVEHFRREGILSRALMNYLAL----LGWRVEGD----EIFTIEEKLQ 406 (592)
T ss_dssp -----CCBCCEE--CCCBCTTSSBCCTTTCS-SBHHHHHHTTCCHHHHHHHHTT----TTBCCCSC----SCCCTTTTGG
T ss_pred -----CCeEEEe--eeeeCCCCCcccccCCc-ccHHHHHHCCCCHHHHHHHHHH----hCCCCccc----ccCCHHHHHh
Confidence 3578898 56888999999999998 58999999775 445666653 34432110 11222 3689
Q ss_pred HHhhccCCCCCccccccccccccC
Q 010356 402 YFDLKNNRLTNYTFSFDQMLNDKG 425 (512)
Q Consensus 402 y~~L~~~~~~~~~Fd~~~~~~~~~ 425 (512)
.|++...+.++..||++++..+|+
T Consensus 407 ~f~~~~i~~~~~~fd~~kl~~~N~ 430 (592)
T 3al0_C 407 SFDPKDISNKGVIFDYQKLEWVNG 430 (592)
T ss_dssp GCCTTSBCSSCCBCCHHHHHHHHH
T ss_pred hCChhhcCcccceeCHHHHhhhhH
Confidence 999999889999999999988874
No 25
>4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding, protein biosynthesis I aminoacyl-tRNA synthetase, ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A 4ari_A* 4as1_A*
Probab=99.92 E-value=1e-23 Score=237.29 Aligned_cols=142 Identities=19% Similarity=0.148 Sum_probs=105.8
Q ss_pred eCHHHHHHHHHHHHHcCCCCCCCc-CCCceEEEEeeCCCCCCCCcccchhhhhHHHHHHHHHHHCCCeEEEeeccCccch
Q 010356 58 LSKNWMAKNIQKMLVDGIETWAPK-LRVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGT 136 (512)
Q Consensus 58 l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~Ve~~spNp~~~lHvGH~R~~iiGD~lar~l~~~G~~V~~~~~i~D~G~ 136 (512)
.++..+.....+..++........ ...++..|--.-|||+|++||||+|+++++|+|+|++|++||+|.+..+++|+|.
T Consensus 25 y~~~~iE~kw~~~W~~~~~f~~~~~~~~~~~~v~~~~PypnG~lHiGHa~~~~~~DvlaRy~rm~G~~V~~~~G~D~~Gl 104 (880)
T 4arc_A 25 YRPEEIESKVQLHWDEKRTFEVTEDESKEKYYCLSMLPYPSGRLHMGHVRNYTIGDVIARYQRMLGKNVLQPIGWDAFGL 104 (880)
T ss_dssp CCHHHHHHHHHHHHHHTTTTCCCCCTTSCEEEEEECCCCCCSSCCHHHHHHHHHHHHHHHHHHHTTCEEECCCEECCCST
T ss_pred CChHHHHHHHHHHHHhcCCcccCCcCCCCCEEEEcCCCCCCCCcchhhhHHHHHHHHHHHHHHHcCCceEEecCccccCc
Confidence 455566666666665443322211 2345666766789999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhCCCCCccCcccHHHHHHHHHHHhcccCCChHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHH
Q 010356 137 QFGMLIEYLFEKFPNSEDANETAIGELQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKV 216 (512)
Q Consensus 137 qi~~l~~~~~~~~~~~~~~~~~~i~~l~~~y~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~ 216 (512)
|+...+.. . ...| +++++...+.|+++
T Consensus 105 pie~~a~~-----------~------------------g~~p------------------------~~~~~~~i~~~~~~ 131 (880)
T 4arc_A 105 PAEGAAVK-----------N------------------NTAP------------------------APWTYDNIAYMKNQ 131 (880)
T ss_dssp HHHHHHHH-----------T------------------TSCH------------------------HHHHHHHHHHHHHH
T ss_pred HHHHHHHH-----------c------------------CCCH------------------------HHHHHHHHHHHHHH
Confidence 88643210 0 0111 23466677889999
Q ss_pred HHHcCCeEeeec-----cccccCchHHHHHHHHhCCCeeee
Q 010356 217 YKRLRVDLEEKG-----ESFYNPYIPGVIDELSKQGLVEES 252 (512)
Q Consensus 217 ~~~L~I~f~~~~-----es~~~~~v~~~~~~L~~~g~~~~~ 252 (512)
+++||+.+||.. +..|.+.+++++.+|.++|++|+.
T Consensus 132 l~~LGis~Dw~~~~~T~d~~~~~~v~~~f~~L~ekGliY~~ 172 (880)
T 4arc_A 132 LKMLGFGYDWSRELATCTPEYYRWEQKFFTELYKKGLVYKK 172 (880)
T ss_dssp HHHTTCCCCGGGCEETTSHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHhCCCcCCCCCEEcCCHHHHHHHHHHHHHHHHCCCEEEe
Confidence 999999998642 345677899999999999999863
No 26
>3afh_A Glutamyl-tRNA synthetase 2; protein-substrate complex, aminoacyl-tRNA synthetase, ATP-binding, ligase, nucleotide-binding; HET: GSU; 2.00A {Thermotoga maritima} PDB: 3akz_B*
Probab=99.87 E-value=6.7e-22 Score=209.12 Aligned_cols=245 Identities=18% Similarity=0.144 Sum_probs=180.5
Q ss_pred eEEEEeeCCCCCCCCcccchhhhhHHHHHHHHHHHCCCeEEEeeccCccchHHHHHHHHHHhhCCCCCccCcccHHHHHH
Q 010356 86 KAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQE 165 (512)
Q Consensus 86 ~v~Ve~~spNp~~~lHvGH~R~~iiGD~lar~l~~~G~~V~~~~~i~D~G~qi~~l~~~~~~~~~~~~~~~~~~i~~l~~ 165 (512)
+|++ =..|.|||+|||||+|++++-...||- +...++--|.|... . +
T Consensus 25 ~v~~-RFAPsPtG~LHiG~~rtal~n~l~Ar~-----~~G~filRieDtD~---------------------~--R---- 71 (488)
T 3afh_A 25 LVRV-RFAPSPTGHLHVGGARTALFNWMFARK-----EGGKFILRIEDTDT---------------------E--R---- 71 (488)
T ss_dssp CCEE-EECCCCSSSCBHHHHHHHHHHHHHHHH-----HTCEEEECBCCCCT---------------------T--T----
T ss_pred CceE-EECCCCCCCccHHHHHHHHHHHHHHHH-----cCCEEEEEEeeCCc---------------------c--c----
Confidence 4555 456999999999999999977777664 34445555666311 0 0
Q ss_pred HHHHHhcccCCChHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHcCCeEee----------eccccccCc
Q 010356 166 FYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEE----------KGESFYNPY 235 (512)
Q Consensus 166 ~y~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~L~I~f~~----------~~es~~~~~ 235 (512)
. +..+.+.+.++++.||+.+|. +..|.+.+.
T Consensus 72 ----------~-----------------------------~~~~~~~I~~dL~wlGl~wDe~~~~gG~~gp~~QSer~~~ 112 (488)
T 3afh_A 72 ----------S-----------------------------SREYEQQILESLRWCGLDWDEGPDIGGDFGPYRQSERLEI 112 (488)
T ss_dssp ----------C-----------------------------CHHHHHHHHHHHHHTTCCCSBBTTTBCTTCCCBGGGCHHH
T ss_pred ----------c-----------------------------cHHHHHHHHHHHHHcCCCCCcCCCCCCCCCCeeeeCCHHH
Confidence 0 112345678899999999865 234556567
Q ss_pred hHHHHHHHHhCCCeee-----------------------eCc---eEEEEec------------------CCCCCeEEEe
Q 010356 236 IPGVIDELSKQGLVEE-----------------------SQG---ARVIFIE------------------GVNIPLIIVK 271 (512)
Q Consensus 236 v~~~~~~L~~~g~~~~-----------------------~dG---a~~~~~~------------------g~~~d~vl~k 271 (512)
..+++++|.++|++|. .+| +++++++ ++..|+||+|
T Consensus 113 y~~~~~~L~~~G~aY~c~ct~eel~~~~~~~Y~~~~~~~~~G~~~~iR~k~~~~~~~~~D~v~G~~~~~~~~~~D~Vl~R 192 (488)
T 3afh_A 113 YREYAEKLVEDKRAYYVVYDKEDPSKELFTTYEYPHEYKEKGHPVTIKFKVLPGKTSFEDLLKGYMEFDNSTLEDFIIMK 192 (488)
T ss_dssp HHHHHHHHHHTTSEEEEEECSSSTTSEEEEESSCCHHHHHTTCCEEEEECCCSSEEEEEETTTEEEEEEGGGSCCEEEEC
T ss_pred HHHHHHHHHHcCCeEecCCCHHHHHhhcCCCCCchhhHHhcCCCceEEEECCCCceeEEeccceeEeecCCCCCCeEEEe
Confidence 8899999999999995 235 4666554 2346899999
Q ss_pred cCCccccccchHHHHHHHHhhcCCceEEEEeeCcccchHHHHHHHHHHcCCCCCCCCCCCceEEEEeEEEECCCCcceee
Q 010356 272 SDGGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRT 351 (512)
Q Consensus 272 sDG~~~Y~~~DiA~~~~k~~~~~~d~~iyV~g~~q~~hf~~l~~~~~~~g~~~~~~~~~~~~~Hv~~g~V~~~~g~kmSk 351 (512)
+||.|||.. |...+.. ..+.+|+| +|.||..+.++...+++++|+. .+.+.|+ .+|++.+|+||||
T Consensus 193 ~DG~PtY~l---A~vVDD~-~mgIThVi--RG~D~l~~tp~q~~l~~aLG~~------~P~f~H~--pli~~~~g~KLSK 258 (488)
T 3afh_A 193 SNGFPTYNF---AVVVDDH-LMRISHVF--RGEDHLSNTPKQLMIYEAFGWE------APVFMHI--PLILGSDRTPLSK 258 (488)
T ss_dssp TTSCBCHHH---HHHHHHH-HTTCSEEE--EEGGGGGGHHHHHHHHHHHTCC------CCEEEEE--CCEECTTSSBCCT
T ss_pred cCCCeehhh---HHHHHHH-hcCCCEEE--EchhhhhCHHHHHHHHHHcCCC------CCeEEEE--eeeeCCCCCcccC
Confidence 999999985 4445655 46889995 9999999999988999999985 3688998 5688899999999
Q ss_pred ecCCeecHHHHHHHHH--HHHHHHHHHhcCCCCCCHHHHHHHHHhhch-hhHHHHhhccCCCCCccccccccccccC
Q 010356 352 RFSEVVRLVDLLDEAK--NRSKAVLIERGKDKEWTEEELEQTAEAVGY-GAAKYFDLKNNRLTNYTFSFDQMLNDKG 425 (512)
Q Consensus 352 R~G~~v~l~dll~~~~--~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~-~airy~~L~~~~~~~~~Fd~~~~~~~~~ 425 (512)
|+|+ +++.++.+.++ +...+.+..-| |++... + .+.. +.++.|+++..+.++..||++++..+|+
T Consensus 259 R~g~-~~l~~~r~~G~~peal~n~l~~lG----~s~~~~-e---~~s~~e~i~~f~~~~i~~~~~~fd~~kl~~~N~ 326 (488)
T 3afh_A 259 RHGA-TSVEHFRREGILSRALMNYLALLG----WRVEGD-E---IFTIEEKLQSFDPKDISNKGVIFDYQKLEWVNG 326 (488)
T ss_dssp TTSC-CBHHHHHHHTCCHHHHHHHHHHTT----CCCSSC-S---CCCHHHHGGGCCGGGSCSSCEECCHHHHHHHHH
T ss_pred cCCc-ccHHHHHHCCCCHHHHHHHHHHhC----CCCccc-c---cCCHHHHHhhCChhhcCccccccChHHhhhccH
Confidence 9998 59999999875 55677776533 332100 0 1222 3588999999999999999999988875
No 27
>1nzj_A Hypothetical protein YADB; Zn cluster, glutamyl T-RNA synthetase, structural genomics, unknown function; 1.50A {Escherichia coli} SCOP: c.26.1.1 PDB: 2zlz_A* 4a91_A*
Probab=99.87 E-value=1.7e-22 Score=201.39 Aligned_cols=233 Identities=17% Similarity=0.091 Sum_probs=150.6
Q ss_pred eeCCCCCCCCcccchhhhhHHHHHHHHHHHCCCeEEEeeccCccchHHHHHHHHHHhhCCCCCccCcccHHHHHHHHHHH
Q 010356 91 FSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQEFYRRS 170 (512)
Q Consensus 91 ~~spNp~~~lHvGH~R~~iiGD~lar~l~~~G~~V~~~~~i~D~G~qi~~l~~~~~~~~~~~~~~~~~~i~~l~~~y~~~ 170 (512)
=-.|+|||+|||||+|+++ .|+|.+.++.+.++-.|.|... + .
T Consensus 9 RFAPsPtG~LHiG~~rtal-----~n~l~Ar~~~g~~ilRieDtD~----------------------~-R--------- 51 (298)
T 1nzj_A 9 RFAPSPSGELHFGSLIAAL-----GSYLQARARQGRWLVRIEDIDP----------------------P-R--------- 51 (298)
T ss_dssp EECCCTTSCCCHHHHHHHH-----HHHHHHHHTTCEEEEEECCSCG----------------------G-G---------
T ss_pred EECcCCCCCccHHHHHHHH-----HHHHHHHhcCCeEEEEEecCCc----------------------h-h---------
Confidence 5689999999999999998 4555555667788777777311 0 0
Q ss_pred hcccCCChHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHcCCeEee--eccccccCchHHHHHHHHhCCC
Q 010356 171 KNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEE--KGESFYNPYIPGVIDELSKQGL 248 (512)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~L~I~f~~--~~es~~~~~v~~~~~~L~~~g~ 248 (512)
. +..+.+.+.++++.|||.+|. ...|.+.+...+++++|+++|+
T Consensus 52 -----~-----------------------------~~~~~~~I~~dL~~LGl~~D~~~~~qSer~~~y~~~~~~L~~~G~ 97 (298)
T 1nzj_A 52 -----E-----------------------------VPGAAETILRQLEHYGLHWDGDVLWQSQRHDAYREALAWLHEQGL 97 (298)
T ss_dssp -----S-----------------------------CTTHHHHHHHHHHHTTCCCSSCCEEGGGCHHHHHHHHHHHHHTTC
T ss_pred -----h-----------------------------HHHHHHHHHHHHHHcCCCCCCCCeeeeCCHHHHHHHHHHHHHcCC
Confidence 0 012346678899999999962 4457777788999999999999
Q ss_pred eeee--------------------------CceEEEEec-------------------CCCCCeEEEecCCccccccchH
Q 010356 249 VEES--------------------------QGARVIFIE-------------------GVNIPLIIVKSDGGFNYASTDL 283 (512)
Q Consensus 249 ~~~~--------------------------dGa~~~~~~-------------------g~~~d~vl~ksDG~~~Y~~~Di 283 (512)
+|.. ..+++++++ ++..|+||+|+||.|+|. +
T Consensus 98 aY~c~ct~~~l~~~~~~Y~g~cr~~~~~g~~~~~R~r~~~~~~~f~D~~~G~~~~~~~~~~~D~VL~R~dG~PtY~---l 174 (298)
T 1nzj_A 98 SYYCTCTRARIQSIGGIYDGHCRVLHHGPDNAAVRIRQQHPVTQFTDQLRGIIHADEKLAREDFIIHRRDGLFAYN---L 174 (298)
T ss_dssp EEEECCCHHHHHHTTSSCCCTTTTTCCCSTTCEEEECCSSCCCEEEETTTEEEECCHHHHHSCCEEECTTSCBCHH---H
T ss_pred cccCcCCHHHHHHcCCCCCCccccCCcCCCCCcEEEecCCcccceehhhCcccccCcccCCCCEEEECCCCCEeee---e
Confidence 9962 136666543 123689999999999995 7
Q ss_pred HHHHHHHhhcCCceEEEEeeCcccchHHHHHHHHHHcCCCCCCCCCCCceEEEEeEEEECCCCcceeeecCCeecHHHHH
Q 010356 284 AALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLL 363 (512)
Q Consensus 284 A~~~~k~~~~~~d~~iyV~g~~q~~hf~~l~~~~~~~g~~~~~~~~~~~~~Hv~~g~V~~~~g~kmSkR~G~~v~l~dll 363 (512)
|++.++. ..+.+++| .|.||..+.+++..+++++|+. .+.+.|+ ++|.+.+|+|||||+|++ +++++.
T Consensus 175 a~vvdD~-~~giThvI--rG~D~l~~t~~q~~l~~alG~~------~p~~~H~--pll~~~~g~KLSKR~g~~-~v~~~~ 242 (298)
T 1nzj_A 175 AVVVDDH-FQGVTEIV--RGADLIEPTVRQISLYQLFGWK------VPDYIHL--PLALNPQGAKLSKQNHAP-ALPKGD 242 (298)
T ss_dssp HHHHHHH-HTTCCEEE--EEGGGHHHHHHHHHHHHHHTCC------CCEEEEE--CBCCC--------------CCCSSC
T ss_pred eeeeEHH-hcCCCEEE--eCccccccHHHHHHHHHHcCCC------CCeEEEe--eeeECCCCCcccccCCcc-ChhcCC
Confidence 8888877 47889986 5999988888887888999984 3678898 568788999999999988 677664
Q ss_pred HHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhchhhHHHHhhccCCCCCc
Q 010356 364 DEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNRLTNY 413 (512)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~airy~~L~~~~~~~~ 413 (512)
+.+ ...+.+..+|-.+.-. .++..+.+ +=..++..|+++.-+.+++
T Consensus 243 ~~~--~~~~~l~~lG~~~~~~-~~~~~~~~-~l~~~~~~f~~~~~~~~~~ 288 (298)
T 1nzj_A 243 PRP--VLIAALQFLGQQAEAH-WQDFSVEQ-ILQSAVKNWRLTAVPESAI 288 (298)
T ss_dssp CHH--HHHHHHHHTTCCCCSC-GGGSCHHH-HHHHHHHTCCGGGSCCCSB
T ss_pred ccH--HHHHHHHHcCCCCCcc-cccCCHHH-HHHHHHHhCCHhhCCCCCC
Confidence 432 2455565554322110 01111100 0013577788877666653
No 28
>1wz2_A Leucyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiativ structural genomics, ligase-RNA complex; 3.21A {Pyrococcus horikoshii}
Probab=99.86 E-value=2.5e-20 Score=213.69 Aligned_cols=137 Identities=10% Similarity=0.130 Sum_probs=104.4
Q ss_pred CCCceEEEEeEEEECCCCcceeeecCCeecHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhchhhHHHHhh-cc
Q 010356 329 TYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDL-KN 407 (512)
Q Consensus 329 ~~~~~~Hv~~g~V~~~~g~kmSkR~G~~v~l~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~airy~~L-~~ 407 (512)
++..+.|. |+|+. +|+|||||+||+|++.|++++ +|+|++|||++ +.
T Consensus 634 ~pk~v~~~--G~v~~-~G~KMSKS~GNvv~p~d~i~~-----------------------------yGaDalR~~ll~~~ 681 (967)
T 1wz2_A 634 WPKGIAVN--GFGTL-EGQKMSKSKGNVLNFIDAIEE-----------------------------NGADVVRLYIMSLA 681 (967)
T ss_dssp SCCCEEEE--CCEEE-SSSCCCTTTCCCCBHHHHHHT-----------------------------TCHHHHHHHHHHHC
T ss_pred ccceEEEe--eEEee-CCEEccccccCCCCHHHHHHH-----------------------------hChHHHHHHHHhCC
Confidence 44667766 78885 799999999999999999997 89999999998 56
Q ss_pred CCCCCccccccccccccCCchHHHHHHHHHHHHHHHhhcCChhhhhhcCCCCCCCHHHHHHHHHHHhhHHHHHHHHHhcC
Q 010356 408 NRLTNYTFSFDQMLNDKGNTAVYLLYAHARICSIIRKSGKDIEELKKTGSLVLDHADERALGLHLLHFSEVIEEALTNLL 487 (512)
Q Consensus 408 ~~~~~~~Fd~~~~~~~~~~~g~ylqY~~aR~~sil~k~~~~~~~~~~~~~~~l~~~~e~~L~~~l~~~~~~v~~a~~~~~ 487 (512)
.+.++++|+.+.+... ...+.|+.+++++...... +. ... .++.++.++..+..+...+.+++++++
T Consensus 682 ~~~~d~~fs~~~~~~~--------~~~l~rl~n~~~~~~~~~~--~~--~~~-~~~~D~~il~~l~~~~~~v~~~~e~~~ 748 (967)
T 1wz2_A 682 EHDSDFDWRRKEVGKL--------RKQIERFYELISQFAEYEV--KG--NVE-LKDIDRWMLHRLNKAIKETTNALEEFR 748 (967)
T ss_dssp CTTCCEEECHHHHHHH--------HHHHHHHHHHHHHHHSSCC--CC--CCC-CCHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCcccCHHHHHHH--------HHHHHHHHHHHHHHhcCCC--CC--ccc-CCHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 7899999999876432 1233567666665422100 00 111 246678899999999999999999999
Q ss_pred hHHHHHHH-HHHHHHHhcchhccc
Q 010356 488 PNVVCEYL-YNLSEYFTRFYSNCQ 510 (512)
Q Consensus 488 p~~l~~yl-~~La~~fn~fY~~~~ 510 (512)
++.++..+ +.+...+|.|.+.++
T Consensus 749 f~~A~~~~~~~l~~~~n~Yi~~~k 772 (967)
T 1wz2_A 749 TRTAVQWAFYSIMNDLRWYLRRTE 772 (967)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999865 689999987766543
No 29
>4g6z_A Glutamate-tRNA ligase; aminoacyl-tRNA synthetase, AARS, class 1B AARS, ATP-dependen charging, protein synthesis, structural genomics; HET: GLU; 2.05A {Burkholderia thailandensis}
Probab=99.82 E-value=1.9e-19 Score=189.44 Aligned_cols=246 Identities=17% Similarity=0.222 Sum_probs=179.7
Q ss_pred ceEEEEeeCCCCCCCCcccchhhhhHHHHHHHHHHHCCCeEEEeeccCccchHHHHHHHHHHhhCCCCCccCcccHHHHH
Q 010356 85 KKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQ 164 (512)
Q Consensus 85 ~~v~Ve~~spNp~~~lHvGH~R~~iiGD~lar~l~~~G~~V~~~~~i~D~G~qi~~l~~~~~~~~~~~~~~~~~~i~~l~ 164 (512)
++|++=| .|+|||++||||+|++++....||- +...++--|.|... .
T Consensus 24 ~~v~~RF-APSPTG~lHiG~~rtal~n~l~Ar~-----~~G~filRieDtD~---------------------~------ 70 (490)
T 4g6z_A 24 RPVRTRF-APSPTGFIHLGNIRSALYPWAFARK-----MKGTFVLRIEDTDV---------------------E------ 70 (490)
T ss_dssp CCCEEEE-CCCCCSCCBHHHHHHHHHHHHHHHH-----TTCEEEEEECCCCG---------------------G------
T ss_pred CCceEEe-CCCCCCCccHHHHHHHHHHHHHHHh-----cCCeEEEEeCCCCc---------------------c------
Confidence 3466645 4999999999999999987777763 44555555666211 0
Q ss_pred HHHHHHhcccCCChHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHcCCeEee--eccccccCchHHHHHH
Q 010356 165 EFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEE--KGESFYNPYIPGVIDE 242 (512)
Q Consensus 165 ~~y~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~L~I~f~~--~~es~~~~~v~~~~~~ 242 (512)
+ . +..+.+.+.++++.||+..|. +..|.+.+...+++++
T Consensus 71 --------R--~-----------------------------~~~~~~~i~~dl~wlGl~~d~~~~~qS~r~~~y~~~~~~ 111 (490)
T 4g6z_A 71 --------R--S-----------------------------SQEAVDAILEGMAWLGLDYDEGPYYQMQRMDRYREVLAQ 111 (490)
T ss_dssp --------G--C-----------------------------CHHHHHHHHHHHHHTTCCCSEEEEEGGGCHHHHHHHHHH
T ss_pred --------c--c-----------------------------cHHHHHHHHHHHHHcCCCCCCCCcccccCHHHHHHHHHH
Confidence 0 0 123446678899999999853 3467777778899999
Q ss_pred HHhCCCeeee----------------Cc------------------------eEEEEec--------------C------
Q 010356 243 LSKQGLVEES----------------QG------------------------ARVIFIE--------------G------ 262 (512)
Q Consensus 243 L~~~g~~~~~----------------dG------------------------a~~~~~~--------------g------ 262 (512)
|.++|++|.. .| ..++++. |
T Consensus 112 Li~~G~aY~C~ct~eel~~~r~~~~~~~~~~~Y~~~cr~~~~~~~~~~~~g~~~~~R~k~~~~~~~~~~D~i~G~~~~~~ 191 (490)
T 4g6z_A 112 MQEKGLVYPCYMSTEELDALRERQRAAGEKPRYDGTWRPEPGKVLPEPPAGVAPVLRFRNPLTGTVAWDDAVKGRVEISN 191 (490)
T ss_dssp HHHTTSEEEECC-------------------CCCCTTCCCTTCCCCCCCTTCCCEEEECCCCSSEEEEEETTTEEEEEEG
T ss_pred HHHCCCEEeCCCCHHHHHHHHHHHHhcCCCCCCCcccccCChhhhhhhhcCCCceEEEecCCCCcEEEEEeeeeeeeecc
Confidence 9999998820 00 0112221 1
Q ss_pred -CCCCeEEEecCCccccccchHHHHHHHHhhcCCceEEEEeeCcccchHHHHHHHHHHcCCCCCCCCCCCceEEEEeEEE
Q 010356 263 -VNIPLIIVKSDGGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLV 341 (512)
Q Consensus 263 -~~~d~vl~ksDG~~~Y~~~DiA~~~~k~~~~~~d~~iyV~g~~q~~hf~~l~~~~~~~g~~~~~~~~~~~~~Hv~~g~V 341 (512)
.-.|+||.|+||.|||. +|..++.. ..+.+||| .|.||...-++...+.+++|+. .+.+.|+ .+|
T Consensus 192 ~~~~D~Vl~R~DG~ptY~---lA~vVDD~-~mgIThVi--RG~D~l~~tprq~~l~~aLG~~------~P~f~Hl--pLi 257 (490)
T 4g6z_A 192 EELDDLVVARPDGTPMYN---FCVVVDDL-DMGITHVI--RGDDHVNNTPRQINILRALGGE------VPVYAHL--PTV 257 (490)
T ss_dssp GGCCCCEEECTTSCBCHH---HHHHHHHH-HTTCCEEE--EEGGGGGGHHHHHHHHHHTTCC------CCEEEEE--CCE
T ss_pred ccCCCeEEEeeCCCccch---hHHHHHHH-hcCCCEEE--eccccccChHHHHHHHHHcCCC------CCeEEEe--cce
Confidence 12589999999999998 46667776 46889995 8999999888888899999995 3688999 568
Q ss_pred ECCCCcceeeecCCeecHHHHHHHHH--HHHHHHHHHhcCCCCCCHHHHHHHHHhhch-hhHHHHhhccCCCCCcccccc
Q 010356 342 LGEDGKRLRTRFSEVVRLVDLLDEAK--NRSKAVLIERGKDKEWTEEELEQTAEAVGY-GAAKYFDLKNNRLTNYTFSFD 418 (512)
Q Consensus 342 ~~~~g~kmSkR~G~~v~l~dll~~~~--~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~-~airy~~L~~~~~~~~~Fd~~ 418 (512)
++.+|+|||||.|. +++.++.+.++ +...+++.. .+|++.+. +.+.. +.+..|+++.-..++..||++
T Consensus 258 ~~~~g~KLSKR~g~-~sl~~~r~~G~~peal~n~l~~----lG~s~~~~----e~~s~~eli~~F~~~~~~~~~~~fd~~ 328 (490)
T 4g6z_A 258 LNEQGEKMSKRHGA-MSVMGYRDAGYLPEAVLNYLAR----LGWSHGDA----EIFTREQFVEWFDLEHLGKSPAQYDHN 328 (490)
T ss_dssp ECTTSSBCCTTTTC-CBHHHHHHTTCCHHHHHHHHHT----SSBCCTTC----CCCCHHHHHHHCCGGGBCSSCEECCHH
T ss_pred eCCCCCcccCCCCC-cCHHHHHHCCCCHHHHHHHHHH----hCCCCCCc----cccCHHHHHhhCCHhhCCCCCCccCHH
Confidence 88999999999996 69999998876 556777764 34443110 11232 568899999999999999999
Q ss_pred ccccccC
Q 010356 419 QMLNDKG 425 (512)
Q Consensus 419 ~~~~~~~ 425 (512)
++..+|+
T Consensus 329 KL~~~N~ 335 (490)
T 4g6z_A 329 KLNWLNN 335 (490)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998875
No 30
>2cfo_A Glutamyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, nucleotide-B; HET: GLU; 2.45A {Synechococcus elongatus}
Probab=99.81 E-value=1.3e-19 Score=191.89 Aligned_cols=242 Identities=17% Similarity=0.136 Sum_probs=176.2
Q ss_pred eeCCCCCCCCcccchhhhhHHHHHHHHHHHCCCeEEEeeccCccchHHHHHHHHHHhhCCCCCccCcccHHHHHHHHHHH
Q 010356 91 FSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQEFYRRS 170 (512)
Q Consensus 91 ~~spNp~~~lHvGH~R~~iiGD~lar~l~~~G~~V~~~~~i~D~G~qi~~l~~~~~~~~~~~~~~~~~~i~~l~~~y~~~ 170 (512)
=..|+|||+|||||+|++++ |+|.+.++.+.++--|.|... .
T Consensus 5 RFAPSPtG~lHiG~artal~-----n~l~Ar~~~G~filRieDtD~---------------------~------------ 46 (492)
T 2cfo_A 5 RLAPSPTGNLHIGTARTAVF-----NWLYARHRGGKFILRIEDTDR---------------------E------------ 46 (492)
T ss_dssp EECCCTTSCCBHHHHHHHHH-----HHHHHHHTTCEEEEEECCCSS---------------------S------------
T ss_pred EeCCCCCCCccHHHHHHHHH-----HHHHHHhcCCeEEEEEeeCCc---------------------c------------
Confidence 35799999999999999988 566666788888888888421 0
Q ss_pred hcccCCChHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHcCCeEee--eccccccCchHHHHHHHHhCCC
Q 010356 171 KNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEE--KGESFYNPYIPGVIDELSKQGL 248 (512)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~L~I~f~~--~~es~~~~~v~~~~~~L~~~g~ 248 (512)
+ .. ..+.+.+.++++.||+..|. +..|.+.+...+++++|.++|+
T Consensus 47 --R--~~-----------------------------~~~~~~i~~dL~wLGl~wde~~~~QS~r~~~y~~~~~~Li~~G~ 93 (492)
T 2cfo_A 47 --R--SR-----------------------------PEYTENILEGLQWLGLTWDEGPYFQSDRLDLYRQAIQTLLDKGL 93 (492)
T ss_dssp --S--CC-----------------------------HHHHHHHHHHHHHTTCCCSEEEEEGGGCHHHHHHHHHHHHHTTS
T ss_pred --c--cc-----------------------------hHHHHHHHHHHHHcCCCCCCCCccccCCHHHHHHHHHHHHHCCC
Confidence 0 01 12335667789999998753 3457776778889999999998
Q ss_pred eeee-----------------------C-----------------ce-EEEEec---------------------CCC-C
Q 010356 249 VEES-----------------------Q-----------------GA-RVIFIE---------------------GVN-I 265 (512)
Q Consensus 249 ~~~~-----------------------d-----------------Ga-~~~~~~---------------------g~~-~ 265 (512)
+|.. + |. .++++. ..- .
T Consensus 94 AY~c~ct~~el~~~r~~~~~~g~~~~y~~~cr~ls~~e~~~~~~~g~~~~iR~k~~~~~~~~~~D~v~G~~~~~~~~~~~ 173 (492)
T 2cfo_A 94 AYYCYCTPEELEALRAEQKAKGQAPRYDNRHRHLTPEEQAAFEAAGRTPVIRFKIEDDRQIEWQDLVRGRVSWQGADLGG 173 (492)
T ss_dssp EEEECCCHHHHHHHHHHHHHHTCCSSCCCTTTTCCHHHHHHHHHTTCCCEEEECCCTTCEEEEEETTTEEEEEEGGGGCS
T ss_pred ceEecCCHHHHHHHHHHHHhcCCCCCCCcccccCCHHHHHHHHhCCCCceEEEEcCCCCceEEEecceeeeeecccccCC
Confidence 8830 1 21 122221 112 5
Q ss_pred CeEEEecC-----CccccccchHHHHHHHHhhcCCceEEEEeeCcccchHHHHHHHHHHcCCCCCCCCCCCceEEEEeEE
Q 010356 266 PLIIVKSD-----GGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGL 340 (512)
Q Consensus 266 d~vl~ksD-----G~~~Y~~~DiA~~~~k~~~~~~d~~iyV~g~~q~~hf~~l~~~~~~~g~~~~~~~~~~~~~Hv~~g~ 340 (512)
|+||+|+| |.|+|. +|..++.. ..+.+|+ |.|.||..+-++...+.+++|+. .+.|.|+ ++
T Consensus 174 D~Vl~R~d~~p~~G~PtY~---la~vvDD~-~~gIthv--iRG~D~~~~t~~q~~l~~alg~~------~P~~~H~--pl 239 (492)
T 2cfo_A 174 DMVIARAAPRGEIGYPLYN---LVVVVDDI-AMGITDV--IRGEDHIGNTPKQILLYEALGAT------PPNFAHT--PL 239 (492)
T ss_dssp SEEEECSCCTTSCCCBCHH---HHHHHHHH-HTTCSEE--EEEGGGTTHHHHHHHHHHHTTCC------CCEEEEE--CC
T ss_pred CeEEEEecCCCCCCceeeh---hhhhhhhh-cCCCCeE--EEchhhhhCHHHHHHHHHHcCCC------CceEEEe--ee
Confidence 99999999 999998 46666666 4788999 59999999888887888999984 3689999 66
Q ss_pred EECCCCcceeeecCCeecHHHHHHHHH--HHHHHHHHHhcCCCCCCH-HHHHHHHHhhch-hhHHHHhhccCCCCCcccc
Q 010356 341 VLGEDGKRLRTRFSEVVRLVDLLDEAK--NRSKAVLIERGKDKEWTE-EELEQTAEAVGY-GAAKYFDLKNNRLTNYTFS 416 (512)
Q Consensus 341 V~~~~g~kmSkR~G~~v~l~dll~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~a~~~~~-~airy~~L~~~~~~~~~Fd 416 (512)
|++.+|+|||||.|++ ++.++.+.++ +...+++..-| |++ .... +.+.. +.+..|++...+.++..||
T Consensus 240 il~~~g~KLSKr~g~~-~l~~~r~~G~~peal~~~l~~lG----~s~~~~~~---e~~~~~e~i~~f~~~~i~~~~~~~d 311 (492)
T 2cfo_A 240 ILNSTGQKLSKRDGVT-SISDFRAMGYLAPALANYMTLLG----WSPPEGVG---ELFTLDLAAKHFSFERINKAGARFD 311 (492)
T ss_dssp EECSSSSBCCTTSSCC-BHHHHHHTTCCHHHHHHHHHHTT----BCCCTTTC---SCCCHHHHHHHCCSTTBCSSCEECC
T ss_pred EECCCCCEecccCCcc-cHHHHHHCCCCHHHHHHHHHHhC----CCCCCccc---cccCHHHHHhhcChhhcCccccccC
Confidence 8889999999999987 8999998765 45666666533 332 0000 01222 4578999998888999999
Q ss_pred ccccccccC
Q 010356 417 FDQMLNDKG 425 (512)
Q Consensus 417 ~~~~~~~~~ 425 (512)
++++..+|+
T Consensus 312 ~~kl~~~N~ 320 (492)
T 2cfo_A 312 WDKLNWLNR 320 (492)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999988874
No 31
>1j09_A Glutamyl-tRNA synthetase; glurs-ATP-Glu complex, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLU ATP; 1.80A {Thermus thermophilus} SCOP: a.97.1.1 c.26.1.1 PDB: 1n75_A* 1n77_A* 1n78_A* 2cuz_A* 2cv0_A* 2cv1_A* 2cv2_A* 2dxi_A* 1g59_A 1gln_A
Probab=99.78 E-value=2.1e-18 Score=181.63 Aligned_cols=242 Identities=17% Similarity=0.137 Sum_probs=168.5
Q ss_pred eeCCCCCCCCcccchhhhhHHHHHHHHHHHCCCeEEEeeccCccchHHHHHHHHHHhhCCCCCccCcccHHHHHHHHHHH
Q 010356 91 FSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQEFYRRS 170 (512)
Q Consensus 91 ~~spNp~~~lHvGH~R~~iiGD~lar~l~~~G~~V~~~~~i~D~G~qi~~l~~~~~~~~~~~~~~~~~~i~~l~~~y~~~ 170 (512)
=-.|.|||+|||||+|++++-..+||- +.-.++--|.|....
T Consensus 5 RFaPsPtG~LHiG~~rtal~n~l~Ar~-----~~G~filRieDtD~~--------------------------------- 46 (468)
T 1j09_A 5 RIAPSPTGDPHVGTAYIALFNYAWARR-----NGGRFIVRIEDTDRA--------------------------------- 46 (468)
T ss_dssp EECCCCSSSCBHHHHHHHHHHHHHHHH-----TTCEEEECBCCCCTT---------------------------------
T ss_pred EeCCCCCCCccHHHHHHHHHHHHHHHH-----cCCEEEEEeCcCCCc---------------------------------
Confidence 346999999999999999987777772 333455556663210
Q ss_pred hcccCCChHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHcCCeEee----------eccccccCchHHHH
Q 010356 171 KNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEE----------KGESFYNPYIPGVI 240 (512)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~L~I~f~~----------~~es~~~~~v~~~~ 240 (512)
+ ..+ .+.+.+.++++.||+..|. +..|.+.+...+++
T Consensus 47 --R--~~~-----------------------------~~~~~I~~dl~wlGl~wd~~~~~gG~~gp~~QS~r~~~y~~~~ 93 (468)
T 1j09_A 47 --R--YVP-----------------------------GAEERILAALKWLGLSYDEGPDVGGPHGPYRQSERLPLYQKYA 93 (468)
T ss_dssp --S--CCT-----------------------------THHHHHHHHHHHTTCCCSBBTTTBCTTCCCBGGGCHHHHHHHH
T ss_pred --c--cCh-----------------------------HHHHHHHHHHHHcCCCCCCCCCCCCCCCCeeccCCHHHHHHHH
Confidence 0 011 1224556688888888753 23455555677888
Q ss_pred HHHHhCCCeeee----------------------------------Cc---eEEEEec-------------------CCC
Q 010356 241 DELSKQGLVEES----------------------------------QG---ARVIFIE-------------------GVN 264 (512)
Q Consensus 241 ~~L~~~g~~~~~----------------------------------dG---a~~~~~~-------------------g~~ 264 (512)
++|.++|.+|.. +| ++-++++ ..-
T Consensus 94 ~~L~~~G~aY~c~ct~~el~~~r~~~~~y~~~cr~l~~~e~~~~~~~g~~~~~R~k~~~~~~~~~~D~~~G~~~~~~~~~ 173 (468)
T 1j09_A 94 EELLKRGWAYRAFETPEELEQIRKEKGGYDGRARNIPPEEAEERARRGEPHVIRLKVPRPGTTEVKDELRGVVVYDNQEI 173 (468)
T ss_dssp HHHHHHTSEEEECCCHHHHHHHHHHHSSCCCGGGGSCHHHHHHHHHTTCCCEEEECCCSSCEEEEEETTTEEEEEEGGGS
T ss_pred HHHHHcCCeEEcCCCHHHHHHHHHHcCCCCCcccCCCHHHHHHHHhcCCCceEEEecCCCCceEEEeccceeEeecccCC
Confidence 888888888730 02 1111111 122
Q ss_pred CCeEEEecCCccccccchHHHHHHHHhhcCCceEEEEeeCcccchHHHHHHHHHHcCCCCCCCCCCCceEEEEeEEEECC
Q 010356 265 IPLIIVKSDGGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGE 344 (512)
Q Consensus 265 ~d~vl~ksDG~~~Y~~~DiA~~~~k~~~~~~d~~iyV~g~~q~~hf~~l~~~~~~~g~~~~~~~~~~~~~Hv~~g~V~~~ 344 (512)
.|+||+|+||.|||.. |..++.. ..+.+|+ |+|.||..+.++...+++++|+. .+.+.|+ +++++.
T Consensus 174 ~D~Vl~R~dg~PtY~~---a~vvDD~-~~githv--irG~D~~~~t~~q~~l~~alg~~------~p~~~h~--~li~~~ 239 (468)
T 1j09_A 174 PDVVLLKSDGYPTYHL---ANVVDDH-LMGVTDV--IRAEEWLVSTPIHVLLYRAFGWE------APRFYHM--PLLRNP 239 (468)
T ss_dssp CCCEEECTTSCBCHHH---HHHHHHH-HTTCCEE--EEEGGGGGGHHHHHHHHHHHTCC------CCEEEEE--CCCBCT
T ss_pred CCeEEEecCCCeeehh---HHHHHHH-HCCCCeE--EEChhhhhhHHHHHHHHHHcCCC------CCeEEEe--eeeeCC
Confidence 5899999999999985 4445665 4688998 69999999999998999999984 2578898 668889
Q ss_pred CCcceeeecCCeecHHHHHHHHH--HHHHHHHHHhcCCCCCCHHHHHHHHHhhch-hhHHHHhhccCCCCCccccccccc
Q 010356 345 DGKRLRTRFSEVVRLVDLLDEAK--NRSKAVLIERGKDKEWTEEELEQTAEAVGY-GAAKYFDLKNNRLTNYTFSFDQML 421 (512)
Q Consensus 345 ~g~kmSkR~G~~v~l~dll~~~~--~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~-~airy~~L~~~~~~~~~Fd~~~~~ 421 (512)
+|+|||||+|+. ++.++.+.++ +...+++..-| |++.+.. +.+.. +.+..|++...+.++..||++++.
T Consensus 240 ~g~klSKR~g~~-~l~~~~~~G~~peal~~~l~~lG----~~~~~~~---~~~~~~el~~~f~~~~~~~~~~~~d~~kl~ 311 (468)
T 1j09_A 240 DKTKISKRKSHT-SLDWYKAEGFLPEALRNYLCLMG----FSMPDGR---EIFTLEEFIQAFTWERVSLGGPVFDLEKLR 311 (468)
T ss_dssp TSCBCCTTTSCC-BHHHHHHTTCCHHHHHHHHHHHS----CCCTTCC---SCCCHHHHHHHCCGGGCCCSCCBCCHHHHH
T ss_pred CCCccccccchh-hHHHHHHCCCCHHHHHHHHHHhc----cCCcccc---cCCCHHHHHhhCChhhcCccccccChHHhh
Confidence 999999999998 8999998875 45677766543 3221000 01222 357889999989999999999998
Q ss_pred cccC
Q 010356 422 NDKG 425 (512)
Q Consensus 422 ~~~~ 425 (512)
.+|+
T Consensus 312 ~~N~ 315 (468)
T 1j09_A 312 WMNG 315 (468)
T ss_dssp HHHH
T ss_pred hhcH
Confidence 7763
No 32
>4gri_A Glutamate--tRNA ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, aminoacyl-tRNA synthetase; HET: GLU; 2.60A {Borrelia burgdorferi}
Probab=99.77 E-value=1.4e-18 Score=185.79 Aligned_cols=246 Identities=17% Similarity=0.207 Sum_probs=173.4
Q ss_pred eEEEEeeCCCCCCCCcccchhhhhHHHHHHHHHHHCCCeEEEeeccCccchHHHHHHHHHHhhCCCCCccCcccHHHHHH
Q 010356 86 KAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQE 165 (512)
Q Consensus 86 ~v~Ve~~spNp~~~lHvGH~R~~iiGD~lar~l~~~G~~V~~~~~i~D~G~qi~~l~~~~~~~~~~~~~~~~~~i~~l~~ 165 (512)
+|.+ =--|+|||+|||||+|++++-..+||- +-|-=+.| |.|... -
T Consensus 24 ~vrt-RFAPsPtG~LHiG~artAl~n~~~Ar~--~~G~fiLR---ieDtD~-----------------------~----- 69 (512)
T 4gri_A 24 STRV-RYAPSPTGLQHIGGIRTALFNYFFAKS--CGGKFLLR---IEDTDQ-----------------------S----- 69 (512)
T ss_dssp CCEE-EECCCSSSCCBHHHHHHHHHHHHHHHH--TTCEEEEC---BCCCCT-----------------------T-----
T ss_pred ceeE-EeCcCCCCcccHHHHHHHHHHHHHHHH--cCCEEEEE---eCcCCC-----------------------C-----
Confidence 4544 557999999999999999999999874 34533333 444210 0
Q ss_pred HHHHHhcccCCChHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHcCCeEeee----------ccccccCc
Q 010356 166 FYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEK----------GESFYNPY 235 (512)
Q Consensus 166 ~y~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~L~I~f~~~----------~es~~~~~ 235 (512)
...| .+.+.+.++++.||+..|.- ..|.+.+.
T Consensus 70 ---------R~~~-----------------------------~~~~~I~~~L~wlGl~wDe~p~~~g~~~py~QS~r~~~ 111 (512)
T 4gri_A 70 ---------RYSP-----------------------------EAENDLYSSLKWLGISFDEGPVVGGDYAPYVQSQRSAI 111 (512)
T ss_dssp ---------SCCH-----------------------------HHHHHHHHHHHHHTCCCSBBTTTBCTTCCCBGGGCHHH
T ss_pred ---------cCCH-----------------------------HHHHHHHHHHHHcCCCCCcCCccCCCCCCccccchHHH
Confidence 0111 23345667899999988632 12333345
Q ss_pred hHHHHHHHHhCCCeeee-----------------------------------------Cc--eEEEEec-----------
Q 010356 236 IPGVIDELSKQGLVEES-----------------------------------------QG--ARVIFIE----------- 261 (512)
Q Consensus 236 v~~~~~~L~~~g~~~~~-----------------------------------------dG--a~~~~~~----------- 261 (512)
-.+++++|.++|.+|.. ++ .+-++++
T Consensus 112 Y~~~~~~L~~~G~aY~C~ct~~el~~~r~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~R~k~~~~~~~~~~D~v 191 (512)
T 4gri_A 112 YKQYAKYLIESGHAYYCYCSPERLERIKKIQNINKMPPGYDRHCRNLSNEEVENALIKKIKPVVRFKIPLEGDTSFDDIL 191 (512)
T ss_dssp HHHHHHHHHHTTSEEEECCCHHHHHHHHHHHHHTTCCCSCCCTTTTCCHHHHHHHHHTTCCCEEEECCCSSCEEEEEETT
T ss_pred HHHHHHHHHHcCCccccccchHHHHHHHHhhhccCCCCccchhhcccchhhhhhhhhhhccceeeecccccCCceeeccc
Confidence 56889999999988831 00 1112211
Q ss_pred -C--------CCCCeEEEecCCccccccchHHHHHHHHhhcCCceEEEEeeCcccchHHHHHHHHHHcCCCCCCCCCCCc
Q 010356 262 -G--------VNIPLIIVKSDGGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPK 332 (512)
Q Consensus 262 -g--------~~~d~vl~ksDG~~~Y~~~DiA~~~~k~~~~~~d~~iyV~g~~q~~hf~~l~~~~~~~g~~~~~~~~~~~ 332 (512)
| ...|+|+.|+||.|||. +|..++.. ..+.+||| .|.|+....++...+.+++|+. .+.
T Consensus 192 ~g~i~~~~~~~~~D~vi~r~dg~PtY~---fA~vVDD~-~mgITHVi--RG~D~l~sTp~q~~l~~alg~~------~P~ 259 (512)
T 4gri_A 192 LGRITWANKDISPDPVILKSDGLPTYH---LANVVDDY-LMKITHVL--RAQEWVSSGPLHVLLYKAFKWK------PPI 259 (512)
T ss_dssp TEEEEEEGGGSCSSCEEECTTSCBCHH---HHHHHHHH-HTTCSEEE--EEGGGGGGHHHHHHHHHHHTCC------CCE
T ss_pred cceEEecccccCCceEEEecCCccccc---ccceeccc-ccCCceec--cccccccccHHHHHHHHHcCCC------CCe
Confidence 1 12478999999999995 67777776 46889995 9999988888777888999995 478
Q ss_pred eEEEEeEEEECCCCcceeeecCCeecHHHHHHHHH--HHHHHHHHHhcCCCCCCHHHHHHHHHhhch-hhHHHHhhccCC
Q 010356 333 ASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAK--NRSKAVLIERGKDKEWTEEELEQTAEAVGY-GAAKYFDLKNNR 409 (512)
Q Consensus 333 ~~Hv~~g~V~~~~g~kmSkR~G~~v~l~dll~~~~--~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~-~airy~~L~~~~ 409 (512)
+.|+ .+|++.+|+|||||.|.. ++.++.++++ ++..|++..- +|++.+..+ .+.. +.+.+|++++-.
T Consensus 260 y~H~--pli~~~~g~kLSKR~~~~-~v~~~~~~G~lPeAl~NyLalL----Gws~~~~~E---ifs~~eli~~Fdl~~v~ 329 (512)
T 4gri_A 260 YCHL--PMVMGNDGQKLSKRHGST-ALRQFIEDGYLPEAIINYVTLL----GWSYDDKRE---FFSKNDLEQFFSIEKIN 329 (512)
T ss_dssp EEEE--CCCBCTTSSBCCTTTSCC-BHHHHHHHTCCHHHHHHHHHHS----SBCSSSSCC---CCCHHHHHHHCCGGGBC
T ss_pred EEec--chhccccccccCcccccc-cHHHHHHcCCChHHHHHHHHHh----CCCCcccch---hhhHHHHHHHHHhcCCC
Confidence 8999 568999999999999954 8999999988 5678887754 343311111 1222 467899999999
Q ss_pred CCCccccccccccccC
Q 010356 410 LTNYTFSFDQMLNDKG 425 (512)
Q Consensus 410 ~~~~~Fd~~~~~~~~~ 425 (512)
.++..||++++..+|+
T Consensus 330 ks~a~fD~~KL~~~N~ 345 (512)
T 4gri_A 330 KSPAIFDYHKLDFFNS 345 (512)
T ss_dssp SSCCBCCHHHHHHHHH
T ss_pred CCCccccHHHHHHHHH
Confidence 9999999999998875
No 33
>2ja2_A Glutamyl-tRNA synthetase; non-discriminating glutamyl-tRNA aminoacylation, protein biosynthesis, aminoacyl-tRNA synthetase, ligase; 1.65A {Mycobacterium tuberculosis} PDB: 3pny_A 3pnv_A
Probab=99.76 E-value=4.4e-18 Score=180.03 Aligned_cols=139 Identities=16% Similarity=0.120 Sum_probs=107.8
Q ss_pred CCeEEEecCCccccccchHHHHHHHHhhcCCceEEEEeeCcccchHHHHHHHHHHc-----CCCCCCCCCCCceEEEEeE
Q 010356 265 IPLIIVKSDGGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRA-----GWLSADDSTYPKASHVGFG 339 (512)
Q Consensus 265 ~d~vl~ksDG~~~Y~~~DiA~~~~k~~~~~~d~~iyV~g~~q~~hf~~l~~~~~~~-----g~~~~~~~~~~~~~Hv~~g 339 (512)
.|+||.|+||.|||. +|..++.. ..+++|+| +|.||..+.+++..+.+++ |+. .+.+.|+ .
T Consensus 183 ~D~Vi~R~Dg~ptY~---lA~vVDD~-~mgithvi--RG~D~~~~t~~q~~l~~aL~~~g~g~~------~P~~~h~--p 248 (498)
T 2ja2_A 183 PDFALTRASGDPLYT---LVNPCDDA-LMKITHVL--RGEDLLPSTPRQLALHQALIRIGVAER------IPKFAHL--P 248 (498)
T ss_dssp CCCBSBCTTSCBCHH---HHHHHHHH-HTTCCEEE--EEGGGGGGHHHHHHHHHHHHHTTSCCC------CCEEEEE--C
T ss_pred CcceeEccCCCcchh---hHHHHHhh-hcCCCEEE--EChhhhhccHHHHHHHHHHHhhcCCCC------CCeEEEe--e
Confidence 588999999999998 45656766 46899995 9999999999888888888 884 3688898 5
Q ss_pred EEECCCCcceeeecCCeecHHHHHHHHH--HHHHHHHHHhcCCCCCCHHHHHHHHHhhc-hhhHHHHhhccCCCCCcccc
Q 010356 340 LVLGEDGKRLRTRFSEVVRLVDLLDEAK--NRSKAVLIERGKDKEWTEEELEQTAEAVG-YGAAKYFDLKNNRLTNYTFS 416 (512)
Q Consensus 340 ~V~~~~g~kmSkR~G~~v~l~dll~~~~--~~~~~~~~~~~~~~~~~~~~~~~~a~~~~-~~airy~~L~~~~~~~~~Fd 416 (512)
++++.+|+|||||+|++ +++++.+.++ +...+++.. .+|++....+ .+. .+.+..|++...+.++..||
T Consensus 249 lil~~~g~KLSKR~g~~-~l~~~r~~G~~peAl~~~l~~----lG~s~~~~~e---~~s~~eli~~f~~~~~~~~~a~fd 320 (498)
T 2ja2_A 249 TVLGEGTKKLSKRDPQS-NLFAHRDRGFIPEGLLNYLAL----LGWSIADDHD---LFGLDEMVAAFDVADVNSSPARFD 320 (498)
T ss_dssp CEECSSSSBCCTTSGGG-BHHHHHHHTCCHHHHHHHHHT----SSCCSCSSCC---CCCHHHHHHHCCGGGCCCSCEECC
T ss_pred eeECCCCCcccccCCcc-cHHHHHhCCCCHHHHHHHHHH----hCCCCCcccc---cCCHHHHHhhCChhhcCccccccC
Confidence 58889999999999984 8999999875 556677664 3343210000 011 14588999999999999999
Q ss_pred ccccccccC
Q 010356 417 FDQMLNDKG 425 (512)
Q Consensus 417 ~~~~~~~~~ 425 (512)
++++..+|+
T Consensus 321 ~~kL~~~N~ 329 (498)
T 2ja2_A 321 QKKADALNA 329 (498)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHhhH
Confidence 999998875
No 34
>3aii_A Glutamyl-tRNA synthetase; amino-acyl tRNA synthetase, ligase; 1.65A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=99.71 E-value=1.2e-17 Score=177.24 Aligned_cols=224 Identities=13% Similarity=0.058 Sum_probs=150.8
Q ss_pred ceEEEEeeCCCCCCCCcccchhhhhHHHHHHHHHHHCCCeEEEeeccCccchHHHHHHHHHHhhCCCCCccCcccHHHHH
Q 010356 85 KKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQ 164 (512)
Q Consensus 85 ~~v~Ve~~spNp~~~lHvGH~R~~iiGD~lar~l~~~G~~V~~~~~i~D~G~qi~~l~~~~~~~~~~~~~~~~~~i~~l~ 164 (512)
.+|+ -=-.|+|||+|||||+|++++- ++.+.+|++.++-.++|.... .
T Consensus 95 g~v~-tRFaPsPtG~LHIGhaRtal~n-----~l~Ar~~~G~~iLRieDtD~~-----------------------R--- 142 (553)
T 3aii_A 95 GEVV-LRFAPNPSGPLHIGHARAAILN-----HEYARKYDGRLILRIEDTDPR-----------------------R--- 142 (553)
T ss_dssp SCCE-EEECCCSSSSCBHHHHHHHHHH-----HHHHHHTTCEEEEEECCCCGG-----------------------G---
T ss_pred CceE-EEeCCCCCCCccHHHHHHHHHH-----HHHHHHcCCEEEEEECcCCcc-----------------------c---
Confidence 3444 4778999999999999999985 444457888888888883210 0
Q ss_pred HHHHHHhcccCCChHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHcCCeEee-eccccccCchHHHHHHH
Q 010356 165 EFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEE-KGESFYNPYIPGVIDEL 243 (512)
Q Consensus 165 ~~y~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~L~I~f~~-~~es~~~~~v~~~~~~L 243 (512)
.. ..+.+.+.++++.||+..|. ...|.|.+...+++++|
T Consensus 143 -----------~~-----------------------------~e~~~~I~edL~wLGl~wd~~~~qSdr~~~y~~~~~~L 182 (553)
T 3aii_A 143 -----------VD-----------------------------PEAYDMIPADLEWLGVEWDETVIQSDRMETYYEYTEKL 182 (553)
T ss_dssp -----------CC-----------------------------TTHHHHHHHHHHHHTCCCSEEEEGGGGHHHHHHHHHHH
T ss_pred -----------cc-----------------------------HHHHHHHHHHHHHcCCCCCCCcccccCHHHHHHHHHHH
Confidence 01 12335678899999999853 34578888889999999
Q ss_pred HhCCCeeeeC-----------------------------------c---eEEEEecC-------CCCCeEEEec------
Q 010356 244 SKQGLVEESQ-----------------------------------G---ARVIFIEG-------VNIPLIIVKS------ 272 (512)
Q Consensus 244 ~~~g~~~~~d-----------------------------------G---a~~~~~~g-------~~~d~vl~ks------ 272 (512)
+++|++|... | ..++++.. ...|+|++|.
T Consensus 183 i~~G~AY~c~cs~eei~~~r~~g~~~~cR~~s~ee~l~~f~~m~~G~~g~~~lR~k~d~~~~n~~~~Dfvl~R~~~~~hp 262 (553)
T 3aii_A 183 IERGGAYVCTCRPEEFRELKNRGEACHCRSLGFRENLQRWREMFEMKEGSAVVRVKTDLNHPNPAIRDWVSMRIVEAEHP 262 (553)
T ss_dssp HHTTSEEEECSCHHHHHHHHHTTCCCGGGGCCHHHHHHHHHHGGGSCTTSCEEEECCCTTCSSGGGTTCEEEEECCSCBT
T ss_pred HHcCCceeCCCCHHHHHHHhhcCCCCccccCCHHHHHHHHHHHhcCCcCceEEEEEcccccCCCCCCCcEEEEecCCCCC
Confidence 9999998410 1 13344431 1247888886
Q ss_pred ---C---CccccccchHHHHHHHHhhcCCceEEEEeeCcccchHHHHHHHHHHcCCCCCCCCCCCceEEEEeEEEECCCC
Q 010356 273 ---D---GGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDG 346 (512)
Q Consensus 273 ---D---G~~~Y~~~DiA~~~~k~~~~~~d~~iyV~g~~q~~hf~~l~~~~~~~g~~~~~~~~~~~~~Hv~~g~V~~~~g 346 (512)
| |.|+| |+|..++.. ..+.+|+| .|.|+..+-++...+.+++|+. .+.+.|+ ++|+ .+|
T Consensus 263 ~~Gd~~~g~PtY---hfa~~vDD~-~~GIThvi--RG~D~~~nt~~Q~~l~~alG~~------~P~y~H~--~~L~-~~g 327 (553)
T 3aii_A 263 RTGTRYRVYPMM---NFSVAVDDH-LLGVTHVL--RGKDHLANREKQEYLYRHLGWE------PPEFIHY--GRLK-MDD 327 (553)
T ss_dssp TTBTSCCEEECH---HHHHHHHHH-HTTCCEEE--C-----CHHHHHHHHHHHHTCC------CCEEECC--CCBC----
T ss_pred ccCCCceeeeee---eeeeeeeec-cCCCceEe--ccHhhhhCHHHHHHHHHHcCCC------CCeEEEe--eEEe-cCC
Confidence 3 24444 466666655 46889985 8999988877776677889984 3556687 6675 589
Q ss_pred cceeeecCC---------------eecHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhchhhHHHHhhccCC-C
Q 010356 347 KRLRTRFSE---------------VVRLVDLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNR-L 410 (512)
Q Consensus 347 ~kmSkR~G~---------------~v~l~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~airy~~L~~~~-~ 410 (512)
+|||||+|+ ..++.+|++.+ +.++|||.|+++... .
T Consensus 328 ~KLSKR~~~~~v~~g~v~gWdDpr~~Ti~~lr~rG----------------------------~~PeaIr~fl~~~G~s~ 379 (553)
T 3aii_A 328 VALSTSGAREGILRGEYSGWDDPRLGTLRAIARRG----------------------------IRPEAIRKLMVEIGVKI 379 (553)
T ss_dssp ----CHHHHHHHHHSSCCSTTCTTSCBHHHHHHTT----------------------------CCHHHHHHHHHHHTTCS
T ss_pred ceechhhhhhhccccccccccCcchHHHHHHHHcC----------------------------CCHHHHHHHHHhcCCCC
Confidence 999999997 56777777764 678999999998877 6
Q ss_pred CCccccccccccc
Q 010356 411 TNYTFSFDQMLND 423 (512)
Q Consensus 411 ~~~~Fd~~~~~~~ 423 (512)
++..|||+.+.+.
T Consensus 380 ~~~~~s~~~L~~~ 392 (553)
T 3aii_A 380 ADSTMSWKKIYGL 392 (553)
T ss_dssp SCBCCCHHHHHHH
T ss_pred ccccccHHHHHHH
Confidence 8999999987654
No 35
>1qtq_A GLNRS, protein (glutaminyl-tRNA synthetase); glutamine, trnaGln, E. coli, complex, ligase/RNA complex; HET: QSI; 2.25A {Escherichia coli} SCOP: b.53.1.2 c.26.1.1 PDB: 1gsg_P* 1gts_A* 1gtr_A* 1zjw_A* 1o0b_A* 1o0c_A* 1qru_A* 1qrs_A* 1qrt_A* 1euy_A* 1euq_A* 1exd_A* 2rd2_A* 2re8_A* 1nyl_A
Probab=99.65 E-value=1e-15 Score=162.46 Aligned_cols=264 Identities=12% Similarity=0.036 Sum_probs=167.0
Q ss_pred HHHHHHHHHHHHcCCCCCCCcCCCceEEEEeeCCCCCCCCcccchhhhhHHHHHHHHHHHCCCeEEEeeccCccchHHHH
Q 010356 61 NWMAKNIQKMLVDGIETWAPKLRVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGM 140 (512)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~Ve~~spNp~~~lHvGH~R~~iiGD~lar~l~~~G~~V~~~~~i~D~G~qi~~ 140 (512)
.|+.+.+.+-+..+.. ++| +-=..|+|||+|||||+|++++-..+|| +|.+.++-.|+|...
T Consensus 9 ~fi~~~i~~dl~~~~~--------~~v-~tRFaPSPtG~LHIGhaRtal~n~l~Ar-----~~gG~fiLRieDTD~---- 70 (553)
T 1qtq_A 9 NFIRQIIDEDLASGKH--------TTV-HTRFPPEPNGYLHIGHAKSICLNFGIAQ-----DYKGQCNLRFDDTNP---- 70 (553)
T ss_dssp CHHHHHHHHHHHHTSC--------SSC-EEEECCCTTSCCBHHHHHHHHHHHHHHH-----HTTCEEEEEECCCCG----
T ss_pred hHHHHHHHhHhhcCCc--------Cce-EEEeCCCCCCCccHHHHHHHHHHHHHHH-----HcCCEEEEEECCCCc----
Confidence 4677777766655432 124 3467899999999999999998666665 677778877888311
Q ss_pred HHHHHHhhCCCCCccCcccHHHHHHHHHHHhcccCCChHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHc
Q 010356 141 LIEYLFEKFPNSEDANETAIGELQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRL 220 (512)
Q Consensus 141 l~~~~~~~~~~~~~~~~~~i~~l~~~y~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~L 220 (512)
. + . +..+.+.+.++++.|
T Consensus 71 -----------------~--------------R--~-----------------------------~~e~~~~I~edL~wL 88 (553)
T 1qtq_A 71 -----------------V--------------K--E-----------------------------DIEYVESIKNDVEWL 88 (553)
T ss_dssp -----------------G--------------G--C-----------------------------CHHHHHHHHHHHHHT
T ss_pred -----------------h--------------h--c-----------------------------CHHHHHHHHHHHHHc
Confidence 0 0 0 123346677889999
Q ss_pred CCeEe--eeccccccCchHHHHHHHHhCCCeeeeC----------------c----------------------------
Q 010356 221 RVDLE--EKGESFYNPYIPGVIDELSKQGLVEESQ----------------G---------------------------- 254 (512)
Q Consensus 221 ~I~f~--~~~es~~~~~v~~~~~~L~~~g~~~~~d----------------G---------------------------- 254 (512)
|+..+ ....|.|.+.+.+.+++|+++|++|... |
T Consensus 89 Gl~wde~~~~qSer~~~~~~~a~~Li~~G~AY~c~ct~eel~~~r~~~~~~g~~~~~R~~s~ee~~~~fe~m~~G~~~~g 168 (553)
T 1qtq_A 89 GFHWSGNVRYSSDYFDQLHAYAIELINKGLAYVDELTPEQIREYRGTLTQPGKNSPYRDRSVEENLALFEKMRAGGFEEG 168 (553)
T ss_dssp TCCCSSSCEEGGGGHHHHHHHHHHHHHTTSEEEECCCHHHHHHHHCCSSSCCCCCTTTTCCHHHHHHHHHHHHTTCSCTT
T ss_pred CCCCCCCCeehcccHHHHHHHHHHHHHCCCceecCCCHHHHHHHhcccccCCCCCccccCchhhhHhHHHHHhCCCccCC
Confidence 99874 2335667666678888999999888410 1
Q ss_pred eEEEEec-------CCCCCeEEEe---------cC---CccccccchHHHHHHHHhhcCCceEEEEeeCcccchHHHHHH
Q 010356 255 ARVIFIE-------GVNIPLIIVK---------SD---GGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFS 315 (512)
Q Consensus 255 a~~~~~~-------g~~~d~vl~k---------sD---G~~~Y~~~DiA~~~~k~~~~~~d~~iyV~g~~q~~hf~~l~~ 315 (512)
..+++.. ..-.|+|++| +| |.|+|. +|..++.. ..+.+|+| .|.+|..+-+....
T Consensus 169 ~~~lR~kid~~~~~~~~~D~Vl~R~~~~~h~~~~d~w~g~PtY~---la~vvDDh-~~GITHvi--Rg~e~~~n~~~q~~ 242 (553)
T 1qtq_A 169 KACLRAKIDMASPFIVMRDPVLYRIKFAEHHQTGNKWCIYPMYD---FTHCISDA-LEGITHSL--CTLEFQDNRRLYDW 242 (553)
T ss_dssp SCEEEECSCTTCSSGGGSSCEEEEECCCCBTTTBTSCSEEECHH---HHHHHHHH-HTTCSEEE--EEGGGTTTHHHHHH
T ss_pred ceEEEEecccccCCCCCCCcEEEEecCCCCCccCCCCccccccc---cccEEEec-cCCcceEe--eccchhhhHHHHHH
Confidence 1222211 0114788998 55 366666 66666665 46889994 89999888887767
Q ss_pred HHHHcCCCCCCCCCCCceEEEEeEEEECCCCcceeeecCC---------------eecHHHHHHHHH--HHHHHHHHHhc
Q 010356 316 AAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSE---------------VVRLVDLLDEAK--NRSKAVLIERG 378 (512)
Q Consensus 316 ~~~~~g~~~~~~~~~~~~~Hv~~g~V~~~~g~kmSkR~G~---------------~v~l~dll~~~~--~~~~~~~~~~~ 378 (512)
+++++|+. ..+...|. +++. .+|+|||||+|+ ..++.+++++++ +...+++..-|
T Consensus 243 l~~alg~~-----~~P~~~~f--~hLn-~~g~KLSKR~~~~~v~~g~v~gWDDPr~~Ti~~lr~rGy~PeAirnfl~~lG 314 (553)
T 1qtq_A 243 VLDNITIP-----VHPRQYEF--SRLN-LEYTVMSKRKLNLLVTDKHVEGWDDPRMPTISGLRRRGYTAASIREFCKRIG 314 (553)
T ss_dssp HHHTSCCS-----CCCEEEEE--CCCC-BTTSCCCHHHHHHHHHTTSSSCTTCTTSCBHHHHHHHTCCHHHHHHHHHHHC
T ss_pred HHHHcCCC-----CCCCeEEE--Eeec-CCCccccccccccccccCcccCCCCcchhhHHHHHHCCCCHHHHHHHHHHcC
Confidence 77889973 11333354 5554 689999999986 678999998865 33455555433
Q ss_pred CCCCCCHHHHHHHHHhhchhhHHHHhhcc-CCCCCcccccccccccc
Q 010356 379 KDKEWTEEELEQTAEAVGYGAAKYFDLKN-NRLTNYTFSFDQMLNDK 424 (512)
Q Consensus 379 ~~~~~~~~~~~~~a~~~~~~airy~~L~~-~~~~~~~Fd~~~~~~~~ 424 (512)
-...-+..++..+ -..+| ++|.. .++.+..||..++...|
T Consensus 315 ~s~~~~~~e~~~l-----e~~~~-~~l~~~~~r~~av~d~~Kl~~~N 355 (553)
T 1qtq_A 315 VTKQDNTIEMASL-----ESCIR-EDLNENAPRAMAVIDPVKLVIEN 355 (553)
T ss_dssp CCSSCCCBCHHHH-----HHHHH-HHHHHHSCEECEESSEEEEEBTT
T ss_pred CCCCccccchhhH-----HHHHH-hCcccccccccceeccceEEEEc
Confidence 1111000011111 01345 55555 55677777777766554
No 36
>2hz7_A Glutaminyl-tRNA synthetase; rossmann fold, GLNRS core, class I aminoacyl-tRNA synthetase, ligase; 2.30A {Deinococcus radiodurans}
Probab=99.61 E-value=2.8e-15 Score=165.60 Aligned_cols=215 Identities=13% Similarity=0.009 Sum_probs=145.5
Q ss_pred CHHHHHHHHHHHHHcCCCCCCCcCCCceEEEEeeCCCCCCCCcccchhhhhHHHHHHHHHHHCCCeEEEeeccCccchHH
Q 010356 59 SKNWMAKNIQKMLVDGIETWAPKLRVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQF 138 (512)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~Ve~~spNp~~~lHvGH~R~~iiGD~lar~l~~~G~~V~~~~~i~D~G~qi 138 (512)
...|+.+.+.+-+..+.. ++| +-=..|+|||+|||||+|++++-..+|| +|.+.++-.|+|...
T Consensus 47 ~~~fi~~ii~~dl~~g~~--------~~v-~tRFaPSPtG~LHIGhARtAL~n~l~Ar-----~~gG~fiLRIEDTD~-- 110 (851)
T 2hz7_A 47 APNFITEIIERDLEAGKY--------PRV-VTRFPPDPSGYAHLGHVFASLLDFNTAR-----QYGGQFNLRMDDTNP-- 110 (851)
T ss_dssp CCCHHHHHHHHHHHTTSC--------SSC-EEEECCCSSSCCBHHHHHHHHHHHHHHH-----HTTCEEEEEECCCCT--
T ss_pred cHHHHHHHHHHHhhcCCc--------Cce-EEEeCCCCCCCccHHHHHHHHHHHHHHH-----HcCCEEEEEECcCCc--
Confidence 346788888766654432 123 3366999999999999999998555555 677888888888311
Q ss_pred HHHHHHHHhhCCCCCccCcccHHHHHHHHHHHhcccCCChHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHH
Q 010356 139 GMLIEYLFEKFPNSEDANETAIGELQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYK 218 (512)
Q Consensus 139 ~~l~~~~~~~~~~~~~~~~~~i~~l~~~y~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~ 218 (512)
. . . ...+.+.+.++++
T Consensus 111 -------------------~--R--------------~-----------------------------~~e~~~~IledL~ 126 (851)
T 2hz7_A 111 -------------------E--L--------------A-----------------------------RQEYVDSIADDLK 126 (851)
T ss_dssp -------------------T--T--------------C-----------------------------CHHHHHHHHHHHH
T ss_pred -------------------c--c--------------c-----------------------------cHHHHHHHHHHHH
Confidence 0 0 0 1234466788999
Q ss_pred HcCCeEe--eeccccccCchHHHHHHHHhCCCeeeeC----------------c--------------------------
Q 010356 219 RLRVDLE--EKGESFYNPYIPGVIDELSKQGLVEESQ----------------G-------------------------- 254 (512)
Q Consensus 219 ~L~I~f~--~~~es~~~~~v~~~~~~L~~~g~~~~~d----------------G-------------------------- 254 (512)
.||+..+ ....|.|.+...+++++|+++|++|... |
T Consensus 127 wLGl~wde~~~~qSer~d~y~e~a~~LI~~G~AY~c~ct~eel~~~r~~~~~~G~~s~~R~ls~ee~l~~fe~m~~G~~~ 206 (851)
T 2hz7_A 127 WLGLDWGEHFYYASDYFDRYYAYAEQLIRQGDAYVESVSPEELSRLRGNATTPGTPSPYRDRSVEENLDLLRRMKAGEFA 206 (851)
T ss_dssp HHTCCCTTCEEEGGGGHHHHHHHHHHHHHTTSEEEECSCHHHHHHHHCBTTBCCCCCTTTTCCHHHHHHHHHHHHTTCSC
T ss_pred HcCCCCCCCcccHhhhHHHHHHHHHHHHHCCCcEeecCCHHHHHHHhcchhccCCCcccccCCHHHHhhHHHHHhcCCcc
Confidence 9999983 2345778788889999999999998411 1
Q ss_pred --eEEEEec-------CCCCCeEEEecC------------CccccccchHHHHHHHHhhcCCceEEEEeeCcccchHHHH
Q 010356 255 --ARVIFIE-------GVNIPLIIVKSD------------GGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMV 313 (512)
Q Consensus 255 --a~~~~~~-------g~~~d~vl~ksD------------G~~~Y~~~DiA~~~~k~~~~~~d~~iyV~g~~q~~hf~~l 313 (512)
..++++. ..-.|+|++|++ |.|+| ++|..++.. ..+.+|+| .|.+|..|-+..
T Consensus 207 ~g~~vlR~Kid~~~~~~~~~DfVl~R~~~~~h~~~gd~w~g~PtY---hfA~vVDD~-~~GITHVi--RG~D~~~n~~~q 280 (851)
T 2hz7_A 207 DGEHVLRAKIDLTAPNMKLRDPVLYRIVNKPHFRTSDEWHIYPAY---DFEHPLQDA-IEGVTHSM--CSLEFVDNRAIY 280 (851)
T ss_dssp TTSCEEEECCCTTCSSGGGSSCEEEEECCCCBTTTBTSCSEEECH---HHHHHHHHH-HHTCSEEE--EEGGGTTTHHHH
T ss_pred cCCeeEEEeccccccCCCCCCcEEEEecCCCCCccCCCCcccccc---ceeeEeeec-cCCcceee--cchhhhhChHHH
Confidence 1122211 011478899986 23344 466666654 46889995 999998888877
Q ss_pred HHHHHHcCCCCCCCCCCCceEEEEeEEEECCCCcceeeecCC---------------eecHHHHHHHHH
Q 010356 314 FSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSE---------------VVRLVDLLDEAK 367 (512)
Q Consensus 314 ~~~~~~~g~~~~~~~~~~~~~Hv~~g~V~~~~g~kmSkR~G~---------------~v~l~dll~~~~ 367 (512)
..+++++|+. ..+...|. +++. .+|+|||||+|+ ..++.++++.++
T Consensus 281 ~~l~~alG~~-----~~P~~~~f--ahLn-~~g~KLSKR~g~~~v~~g~v~gwDDPr~~TI~~lr~rGy 341 (851)
T 2hz7_A 281 DWLMEKLNFD-----PRPHQYEF--GRRG-LEYTITSKRKLRELVQAGRVSGWDDPRMPTLRAQRRLGV 341 (851)
T ss_dssp HHHHHHTTCS-----SCCEEEEE--CCEE-ETTCCCCHHHHHHHHHTTSSSSTTCTTSSBHHHHHHHTC
T ss_pred HHHHHHcCCC-----CCCCceEE--EEec-CCCccccccccccccccCcccCCCCcchhHHHHHHHcCC
Confidence 6778899983 21332344 5565 478999999986 567889988864
No 37
>3gdz_A Arginyl-tRNA synthetase; klebsiella pneumoniae subsp. pneumo 78578, structural genomics, PSI-2; HET: MSE; 2.20A {Klebsiella pneumoniae subsp}
Probab=99.59 E-value=2.2e-15 Score=127.75 Aligned_cols=65 Identities=23% Similarity=0.512 Sum_probs=60.3
Q ss_pred ccHHHHHHHHhhcCCCCCCCChHHHHHHHHHhCCCCCCceeeEeccCCeEEEEeCHHHHHHHHHHHHHcCC
Q 010356 5 CSNNAMGLWSKIKGKGTEFKGPQPVGQAIMKNLPPSEMIESCSVAGPGFVNVVLSKNWMAKNIQKMLVDGI 75 (512)
Q Consensus 5 ~~n~a~~~ak~~~~~~~~~~~p~~iA~~i~~~l~~~~~i~~v~~~g~GfiN~~l~~~~~~~~~~~~~~~~~ 75 (512)
|||+||.|||.+| ++|++||++|++.|+.+++|++++++|||||||+|++++|.+.+.+++...+
T Consensus 43 a~n~a~~lak~~~------~~P~~iA~~i~~~l~~~~~i~~vevagpGFINf~l~~~~~~~~l~~il~~~~ 107 (109)
T 3gdz_A 43 QANGVMAVAKKLG------MAPRQLAEQVLSHLDLNGIANKVEIAGPGFINIFLDPAFLADNVNRALQSER 107 (109)
T ss_dssp EECCHHHHHHHTT------SCHHHHHHHHHHHCCCTTTEEEEEEETTTEEEEEECHHHHHHHHHHHHTTC-
T ss_pred ecHHHHHHHHHhC------CCHHHHHHHHHHhcCcCCcEeEEEEeCCCeEEEEECHHHHHHHHHHHHhccc
Confidence 7999999999999 9999999999999987788999999999999999999999999998886543
No 38
>2cyb_A Tyrosyl-tRNA synthetase; rossmann-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: TYR; 1.80A {Archaeoglobus fulgidus}
Probab=98.25 E-value=8.3e-06 Score=82.05 Aligned_cols=60 Identities=17% Similarity=0.269 Sum_probs=48.0
Q ss_pred cCCceEEEEeeCcccchHHHHHHHHHHcCCCCCCCCCCCceEEEEeEEEECCCCcceeeecCCeecHHHH
Q 010356 293 EKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDL 362 (512)
Q Consensus 293 ~~~d~~iyV~g~~q~~hf~~l~~~~~~~g~~~~~~~~~~~~~Hv~~g~V~~~~g~kmSkR~G~~v~l~dl 362 (512)
++++.+ ++|.||..|+..-..++..+|+. .+...|. .+|.+.+|+|||||.||+|.+.|-
T Consensus 169 ~~~~~v--~~G~DQ~~~~~l~rdla~~~~~~------~p~~l~~--pll~~l~G~KMSKS~~n~I~l~d~ 228 (323)
T 2cyb_A 169 LGVDLA--VGGIDQRKIHMLARENLPRLGYS------SPVCLHT--PILVGLDGQKMSSSKGNYISVRDP 228 (323)
T ss_dssp TTCSEE--EEEGGGHHHHHHHHHHGGGGTCC------CCEEEEE--CCCBCTTSSBCCTTTTCSCBTTCC
T ss_pred cCCCEE--EechhhHHHHHHHHHHHHhcCCC------CceEEec--CcccCCCCCcccCCcCceeCCCCC
Confidence 578877 59999999998887888888873 2445565 668888999999999999998753
No 39
>2dlc_X Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligase-tRNA complex; HET: 2MG OMG M2G PSU 6IA 5MC 5MU 1MA YMP; 2.40A {Saccharomyces cerevisiae}
Probab=98.12 E-value=1.1e-05 Score=83.31 Aligned_cols=62 Identities=13% Similarity=0.100 Sum_probs=39.7
Q ss_pred cCCceEEEEeeCcccchHHHHHHHHHHcCCCCCCCCCCCceEEEEeEEEECCC-CcceeeecCCe-ecHHHHHH
Q 010356 293 EKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGED-GKRLRTRFSEV-VRLVDLLD 364 (512)
Q Consensus 293 ~~~d~~iyV~g~~q~~hf~~l~~~~~~~g~~~~~~~~~~~~~Hv~~g~V~~~~-g~kmSkR~G~~-v~l~dll~ 364 (512)
++++++ ++|.||..|+.....++..+|+. .+...|. .+|.+.+ |+|||||.||. |.|.|=-+
T Consensus 181 ~~~~~v--~~G~DQ~~~~~l~rdl~~r~~~~------~p~~l~~--pll~gl~~G~KMSKS~~ns~I~L~D~p~ 244 (394)
T 2dlc_X 181 LDVDCQ--FGGVDQRKIFVLAEENLPSLGYK------KRAHLMN--PMVPGLAQGGKMSASDPNSKIDLLEEPK 244 (394)
T ss_dssp TTCSEE--EEEGGGHHHHHHHHHHGGGGTCC------CCEEEEE--CCCCCCC----------CCSCBTTCCHH
T ss_pred hCCCEE--ecCccHHHHHHHHHHHHHHcCCC------CCEEEec--ccccCCCCCCcCCCCCCCCEEeccCCHH
Confidence 577776 48999999999888888999874 3455665 5677778 99999999996 88765433
No 40
>1n3l_A Tyrosyl-tRNA synthetase; rossmann fold AS catalytic domain, unique anticodon recognit domain, dimer, ligase; 1.18A {Homo sapiens} SCOP: c.26.1.1 PDB: 1q11_A*
Probab=98.02 E-value=6.5e-06 Score=84.36 Aligned_cols=60 Identities=17% Similarity=0.142 Sum_probs=40.4
Q ss_pred cCCceEEEEeeCcccchHHHHHHHHHHcCCCCCCCCCCCceEEEEeEEEECCCCcceeeecCC-eecHHHH
Q 010356 293 EKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSE-VVRLVDL 362 (512)
Q Consensus 293 ~~~d~~iyV~g~~q~~hf~~l~~~~~~~g~~~~~~~~~~~~~Hv~~g~V~~~~g~kmSkR~G~-~v~l~dl 362 (512)
++++.+ ++|.||..|+.....++..+|+. .+...|. .+|.+.+|+|||||.|| .|.|.|=
T Consensus 177 ~~a~~v--~~G~DQ~~~~~l~rdl~~r~~~~------~p~~l~~--pll~gldG~KMSKS~~ns~I~L~d~ 237 (372)
T 1n3l_A 177 LKVDAQ--FGGIDQRKIFTFAEKYLPALGYS------KRVHLMN--PMVPGLTGSKMSSSEEESKIDLLDR 237 (372)
T ss_dssp TTCSEE--EEEGGGHHHHHHHHHHGGGGTCC------CCEEEEE--CCCCCSSCC-------CCSCBTTCC
T ss_pred hcCCEE--EcChhHHHHHHHHHHHHHHcCCC------CCEEEec--CccCCCCcccccCCCCCCeEeccCC
Confidence 567776 48999999999888888888873 2445565 56888889999999999 7887653
No 41
>2g36_A Tryptophanyl-tRNA synthetase; TM0492, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI, ligase; HET: TRP; 2.50A {Thermotoga maritima}
Probab=97.60 E-value=7.8e-05 Score=75.28 Aligned_cols=66 Identities=21% Similarity=0.309 Sum_probs=44.0
Q ss_pred cCCceEEEEeeCcccchHHHHHHHHHHcCCCCCCCCC-CCceEEEEeEEEECCCCcceeeecCCeecHHH
Q 010356 293 EKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDST-YPKASHVGFGLVLGEDGKRLRTRFSEVVRLVD 361 (512)
Q Consensus 293 ~~~d~~iyV~g~~q~~hf~~l~~~~~~~g~~~~~~~~-~~~~~Hv~~g~V~~~~g~kmSkR~G~~v~l~d 361 (512)
++++.+ .+|.||..|+..-..++..++...+ .-+ .+...+....+|.+.+|+|||||.||.|.|.|
T Consensus 152 ~~~~~v--pvG~DQ~~hi~l~rdia~r~n~~yg-~~f~~P~~~~~~~~~l~gldG~KMSKS~~n~I~L~d 218 (340)
T 2g36_A 152 YKAEGV--PVGEDQVYHIELTREIARRFNYLYD-EVFPEPEAILSRVPKLPGTDGRKMSKSYGNIINLEI 218 (340)
T ss_dssp TTCSEE--EECGGGHHHHHHHHHHHHHHHHHSC-CCCCCCEEEECCSCCCCCTTSSCCCGGGTCCCBTTC
T ss_pred hCCCEE--EcccchHHHHHHHHHHHHHhhhhcc-cccCCchhhhccccccCCCCccccCCCCCCeEeeeC
Confidence 577766 5999999999987777776642100 001 12211111246777789999999999998876
No 42
>2cya_A Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, structural genomics, NPPSFA, national on protein structural and functional analyses; 2.20A {Aeropyrum pernix}
Probab=97.55 E-value=0.00018 Score=73.29 Aligned_cols=60 Identities=15% Similarity=0.139 Sum_probs=44.4
Q ss_pred cCCceEEEEeeCcccchHHHHHHHHHHcCCCCCCCCCCCceEEEEeEEEECCC-----------------Ccceeee-cC
Q 010356 293 EKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGED-----------------GKRLRTR-FS 354 (512)
Q Consensus 293 ~~~d~~iyV~g~~q~~hf~~l~~~~~~~g~~~~~~~~~~~~~Hv~~g~V~~~~-----------------g~kmSkR-~G 354 (512)
++++.+ .+|.||..|+..-..++..+|+. .+...|. .+|.+.+ |+||||| .|
T Consensus 176 ~~~~~v--~~G~DQ~~~~~l~rdla~r~~~~------~p~~l~~--~ll~~l~g~~~~~~~~~~~~~~~~g~KMSKS~~~ 245 (364)
T 2cya_A 176 MDLDIA--LGGMDQRKAHMLARDVAEKLGRK------KPVAIHT--PIISSLQGPGRMEASQGEIDDVLAEVKMSKSKPE 245 (364)
T ss_dssp TTCSEE--EEEGGGHHHHHHHHHHHTTTTCC------CCEEEEE--CCCBCSSCC----------------CBCCSSSGG
T ss_pred cCCCEE--eccchHHHHHHHHHHHHHHcCCC------Cceeecc--ceeeCCCcccccccccccccccccccccCCCCCC
Confidence 577766 48999999999888888888863 2334554 4566666 7899999 68
Q ss_pred CeecHHHH
Q 010356 355 EVVRLVDL 362 (512)
Q Consensus 355 ~~v~l~dl 362 (512)
+.|.|.|=
T Consensus 246 ~~I~L~d~ 253 (364)
T 2cya_A 246 TAVFVVDS 253 (364)
T ss_dssp GSCBTTCC
T ss_pred CEeeccCC
Confidence 88988654
No 43
>2zp1_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding; HET: IYR; 1.70A {Methanocaldococcus jannaschii} PDB: 1zh6_A* 1j1u_A* 1u7d_A 2q1g_A* 2pxh_A* 1zh0_A* 2q1i_A* 2ag6_A* 3qe4_A* 3d6u_A* 3d6v_A* 1u7x_A 3n2y_A* 2hgz_A*
Probab=97.28 E-value=0.00081 Score=67.12 Aligned_cols=59 Identities=12% Similarity=0.053 Sum_probs=40.1
Q ss_pred cCCceEEEEeeCcccchHHHHHHHHHHcCCCCCCCCCCCceEEEEeEEEECCCC-cceeeecCCeecHHHHHHH
Q 010356 293 EKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDG-KRLRTRFSEVVRLVDLLDE 365 (512)
Q Consensus 293 ~~~d~~iyV~g~~q~~hf~~l~~~~~~~g~~~~~~~~~~~~~Hv~~g~V~~~~g-~kmSkR~G~~v~l~dll~~ 365 (512)
++++.++ +|.||..|+.....+ .- + .+...|. .+|.+.+| +|||||.||.|.|.|=-++
T Consensus 162 ~~~~~v~--~G~DQ~~~~~l~R~i----~~-~-----~~~~~~~--~~l~~l~G~~KMSKS~~~~I~L~d~~~~ 221 (314)
T 2zp1_A 162 LGVDVAV--GGMEQRKIHMLAREL----LP-K-----KVVCIHN--PVLTGLDGEGKMSSSKGNFIAVDDSPEE 221 (314)
T ss_dssp HTCSEEE--EEGGGHHHHHHHHHH----SS-S-----CCEEEEE--CCCBCTTSSSBCCTTTTCSCBTTCCHHH
T ss_pred hCCCEEE--cChhHHHHHHHHHHh----cC-C-----CcEEeec--cccccCCcccccCCCCcceecCCCCHHH
Confidence 4677664 899999887544333 21 1 2334554 46777789 7999999999988764444
No 44
>3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, tyrrs, pseudod translation, ATP-binding, nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania major} PDB: 3p0i_A* 3p0h_A*
Probab=96.93 E-value=0.0023 Score=70.32 Aligned_cols=64 Identities=13% Similarity=0.065 Sum_probs=45.4
Q ss_pred cCCceEEEEeeCcccchHHHHHHHHHHcCCCCCCCCCCCceEEEEeEEEECC-CC-cceeeecC-CeecHHHHHHH
Q 010356 293 EKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGE-DG-KRLRTRFS-EVVRLVDLLDE 365 (512)
Q Consensus 293 ~~~d~~iyV~g~~q~~hf~~l~~~~~~~g~~~~~~~~~~~~~Hv~~g~V~~~-~g-~kmSkR~G-~~v~l~dll~~ 365 (512)
+++|.+ .+|.||..|+..-..++..+|..+ .+...|. .+|.+- +| +|||||.| |.|.|.|=-++
T Consensus 182 ~~ad~v--pvG~DQ~~~l~l~Rdla~r~n~~~-----~p~~l~~--~~l~gL~dG~~KMSKS~~~~~I~L~D~p~~ 248 (690)
T 3p0j_A 182 LKADIC--QLGLDQRKVNMLAREYCDLIGRKL-----KPVILSH--HMLAGLKQGQAKMSKSDPDSAIFMEDTEED 248 (690)
T ss_dssp TTCSEE--CCBGGGHHHHHHHHHHHHHTTCCC-----CCEEEEB--CCCCCSSTTCSSCBTTBGGGSCBTTCCHHH
T ss_pred hCCCEE--eccccHHHHHHHHHHHHHHhCCCC-----CceEeec--CeeecCCCCCcCCCCCCCCCeeeccCCHHH
Confidence 467755 489999999998888899998742 2333443 567766 77 59999998 68887643333
No 45
>2pid_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, protein-substrate complex, ATP-BI ligase, mitochondrion, nucleotide-binding, protein biosynth; HET: YSA; 2.20A {Homo sapiens} PDB: 3zxi_A*
Probab=95.70 E-value=0.0044 Score=62.81 Aligned_cols=59 Identities=10% Similarity=-0.042 Sum_probs=33.8
Q ss_pred cCCceEEEEeeCcccchHHHHHHHHHHcCCCCCCCCCCCceEEEEeEEEECCCCcceeeecCCeecHHH
Q 010356 293 EKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVD 361 (512)
Q Consensus 293 ~~~d~~iyV~g~~q~~hf~~l~~~~~~~g~~~~~~~~~~~~~Hv~~g~V~~~~g~kmSkR~G~~v~l~d 361 (512)
++++.+ ++|.||..|+..-..++..+|..+ +... ...++.+.+|+|||||.||+|.|+|
T Consensus 209 ~~~~i~--p~G~DQ~~~i~l~rdla~r~n~~~------~~~l--~~pll~~ldG~KMSKS~~naI~L~d 267 (356)
T 2pid_A 209 YGCRVQ--LGGSDQLGNIMSGYEFINKLTGED------VFGI--TVPLITSTTGAKLGKSAGNAVWLNR 267 (356)
T ss_dssp HCCCEE--EEEGGGHHHHHHHHHHHHHHSSCC------CEEE--EECCCC-------------CCBSST
T ss_pred CCCcEE--eccHHHHHHHHHHHHHHHHhCCCC------cccc--ccccccCCCcccccCCCCCeeeccC
Confidence 477755 589999999998888999888631 2223 3356777789999999999998876
No 46
>2yxn_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: AZY; 1.80A {Escherichia coli str} PDB: 1wq3_A* 1wq4_A* 1x8x_A* 1vbn_A* 1vbm_A*
Probab=95.35 E-value=0.008 Score=60.09 Aligned_cols=58 Identities=12% Similarity=0.030 Sum_probs=44.6
Q ss_pred CCceEEEEeeCcccchHHHHHHHHHHcCCCCCCCCCCCceEEEEeEEEECCCCcceeeecCCeecHHH
Q 010356 294 KAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVD 361 (512)
Q Consensus 294 ~~d~~iyV~g~~q~~hf~~l~~~~~~~g~~~~~~~~~~~~~Hv~~g~V~~~~g~kmSkR~G~~v~l~d 361 (512)
+++ +=++|.||..|+..-..++..+|..+ + .++...+|.+.+|+|||||.||.|.|+|
T Consensus 191 ~~~--v~~gG~DQ~~~i~l~rdla~r~n~~~------~--~~l~~pll~gldG~KMSKS~~n~I~L~d 248 (322)
T 2yxn_A 191 GVV--LCIGGSDQWGNITSGIDLTRRLHQNQ------V--FGLTVPLITKADGTKFGKTEGGAVWLDP 248 (322)
T ss_dssp CEE--EEEECTTCHHHHHHHHHHHHHHHCCC------C--EEEECCCCBCTTSCBTTEETTEECBSST
T ss_pred Cce--EEecCchhHHHHHHHHHHHHHhCCCC------c--eeeccCccCCCCcccccCCCCCeeeccC
Confidence 555 44679999999998888888887631 2 2334456777789999999999999876
No 47
>1jil_A Tyrrs, tyrosyl-tRNA synthetase; truncation, based inhibitor design, ligase; HET: 485; 2.20A {Staphylococcus aureus} SCOP: c.26.1.1 PDB: 1jij_A* 1jii_A* 1jik_A*
Probab=95.00 E-value=0.017 Score=59.84 Aligned_cols=59 Identities=20% Similarity=0.090 Sum_probs=45.2
Q ss_pred cCCceEEEEeeCcccchHHHHHHHHHHc-CCCCCCCCCCCceEEEEeEEEECCCCcceeeecCCeecHHH
Q 010356 293 EKAEWIIYVTDVGQQLHFDMVFSAAKRA-GWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVD 361 (512)
Q Consensus 293 ~~~d~~iyV~g~~q~~hf~~l~~~~~~~-g~~~~~~~~~~~~~Hv~~g~V~~~~g~kmSkR~G~~v~l~d 361 (512)
++++.+ ++|.||..|+..-..++..+ +.. .+...+ ..++.+.+|+|||||.||+|.|+|
T Consensus 185 ~~~~i~--~gG~DQ~~ni~~grdla~r~~~~~------~~~~l~--~pll~~ldG~KMSKS~~naI~L~d 244 (420)
T 1jil_A 185 LNCKIQ--VGGSDQWGNITSGIELMRRMYGQT------DAYGLT--IPLVTKSDGKKFGKSESGAVWLDA 244 (420)
T ss_dssp HCEEEE--EEEGGGHHHHHHHHHHHHHHHCCC------CCEEEE--ECCCBCTTSCBTTBCSSSBCBSST
T ss_pred CCCcEE--eccHHHHHHHHHHHHHHHHhcCCC------CeeEee--cccccCCccccccCCCCCeEecCC
Confidence 455544 58999999999888888888 753 122333 456888899999999999998876
No 48
>2jan_A Tyrosyl-tRNA synthetase; protein biosynthesis, aminoacyl-tRNA synthetase, tyrrs, ligase, tyrosine, RNA-binding, ATP-binding; 2.9A {Mycobacterium tuberculosis}
Probab=95.00 E-value=0.01 Score=61.48 Aligned_cols=60 Identities=10% Similarity=-0.001 Sum_probs=46.2
Q ss_pred hcCCceEEEEeeCcccchHHHHHHHHHHcCCCCCCCCCCCceEEEEeEEEECCCCcceeeecCC-eecHHH
Q 010356 292 EEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSE-VVRLVD 361 (512)
Q Consensus 292 ~~~~d~~iyV~g~~q~~hf~~l~~~~~~~g~~~~~~~~~~~~~Hv~~g~V~~~~g~kmSkR~G~-~v~l~d 361 (512)
.++++.+ ++|.||..|+..-..++..+|..+ + ..+...++.+.+|+|||||.|| +|.|+|
T Consensus 185 ~~~~~i~--~gG~DQ~~ni~lgrdlarr~~~~~------~--~~l~~plL~~ldG~KMSKS~~nsaI~L~d 245 (432)
T 2jan_A 185 RHGCTLQ--IGGADQWGNIIAGVRLVRQKLGAT------V--HALTVPLVTAADGTKFGKSTGGGSLWLDP 245 (432)
T ss_dssp HHCCCEE--EECSTTHHHHHHHHHHHHHHHCCC------C--EEEECCCCBCTTSCBTTBCSSSCBCBSST
T ss_pred cCCCcEE--eccHHHHHHHHHHHHHHHHhCCCC------c--cccccccccCCCcCcCCCCCCCCeEEccC
Confidence 3477765 489999999998888888887631 2 2233456888899999999999 898876
No 49
>2ts1_A Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 3ts1_A* 1tyd_E* 1tya_E* 1tyc_A 1tyb_E* 4ts1_A* 1jh3_A
Probab=94.94 E-value=0.015 Score=60.13 Aligned_cols=59 Identities=15% Similarity=0.095 Sum_probs=44.2
Q ss_pred cCCceEEEEeeCcccchHHHHHHHHHHc-CCCCCCCCCCCceEEEEeEEEECCCCcceeeecCCeecHHH
Q 010356 293 EKAEWIIYVTDVGQQLHFDMVFSAAKRA-GWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVD 361 (512)
Q Consensus 293 ~~~d~~iyV~g~~q~~hf~~l~~~~~~~-g~~~~~~~~~~~~~Hv~~g~V~~~~g~kmSkR~G~~v~l~d 361 (512)
++++.+ ++|.||..|+..-..++..+ +.. .+...+ ..++.+.+|+|||||.||+|.|+|
T Consensus 184 ~~~~i~--~gG~DQ~~ni~lgrdlarr~~~~~------~~~~lt--~pll~~ldG~KMSKS~~naI~L~d 243 (419)
T 2ts1_A 184 EGCRLQ--IGGSDQWGNITAGLELIRKTKGEA------RAFGLT--IPLVTKADGTKFGKTESGTIWLDK 243 (419)
T ss_dssp HCEEEE--EEEGGGHHHHHHHHHHHHHHHC--------CCEEEE--ECCCCCTTSCCTTCCSSCCCBSST
T ss_pred CCCcEE--eccHHHHHHHHHHHHHHHHhcCCC------Ceeecc--cccccCCCcccccCCCCCeEecCC
Confidence 455544 58999999999888888888 753 122333 456888899999999999998876
No 50
>1h3f_A Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase; HET: TYE; 2.00A {Thermus thermophilus} SCOP: c.26.1.1 d.66.1.4 PDB: 1h3e_A*
Probab=94.37 E-value=0.027 Score=58.40 Aligned_cols=59 Identities=14% Similarity=0.221 Sum_probs=45.4
Q ss_pred cCCceEEEEeeCcccchHHHHHHHHHHcCCCCCCCCCCCceEEEEeEEEECCCCc-ceeeecCCeecHHH
Q 010356 293 EKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGK-RLRTRFSEVVRLVD 361 (512)
Q Consensus 293 ~~~d~~iyV~g~~q~~hf~~l~~~~~~~g~~~~~~~~~~~~~Hv~~g~V~~~~g~-kmSkR~G~~v~l~d 361 (512)
++++.+ .+|.||..|+..-..++..+|..+ +...| ..++.+.+|. |||||.||.|.|+|
T Consensus 186 l~~~l~--~gG~DQ~~ni~l~rdlarr~~~~~------~~~lt--~pll~gldG~~KMSKS~~n~I~L~d 245 (432)
T 1h3f_A 186 IRADVE--MGGTDQRFNLLVGREVQRAYGQSP------QVCFL--MPLLVGLDGREKMSKSLDNYIGLTE 245 (432)
T ss_dssp HTCSEE--EEEGGGHHHHHHHHHHHHHTTCCC------CEEEE--ECCCBCTTSSSBCCGGGTCCCBTTS
T ss_pred cCccEE--EechHHHHHHHHHHHHHHHhCCCC------ceEee--cccccCCCCccccCcCCCCeeCCCC
Confidence 356765 589999999998888888888632 22333 3568778896 99999999999876
No 51
>2el7_A Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synthetase, translation, structural GEN NPPSFA; 2.50A {Thermus thermophilus}
Probab=94.16 E-value=0.014 Score=58.58 Aligned_cols=63 Identities=22% Similarity=0.235 Sum_probs=43.5
Q ss_pred cCCceEEEEeeCcccchHHHHHHHHHHc----CCCCCCCCCCCceEEEEe-EEEECCCC-cceeeecCCeecHHH
Q 010356 293 EKAEWIIYVTDVGQQLHFDMVFSAAKRA----GWLSADDSTYPKASHVGF-GLVLGEDG-KRLRTRFSEVVRLVD 361 (512)
Q Consensus 293 ~~~d~~iyV~g~~q~~hf~~l~~~~~~~----g~~~~~~~~~~~~~Hv~~-g~V~~~~g-~kmSkR~G~~v~l~d 361 (512)
++++.+ .+|.||..|+..-..++..+ |-. -..+...|... .+|.+.+| +|||||.||.|.|.|
T Consensus 140 ~~~~lv--p~G~DQ~~~i~l~rdla~r~n~~~g~~----f~~P~~~~~~~~p~l~gldG~~KMSKS~~n~I~L~d 208 (337)
T 2el7_A 140 YKADTV--PVGEDQVQHIELTREIARRFNHLFGET----FPEPQALLNPEAPRVPGIDGKAKMSKSLGNTIGLLE 208 (337)
T ss_dssp TTCCEE--ECCGGGCHHHHHHHHHHHHHHHHHSSC----CCCCEEECCTTSCCCBCTTSSSBCCTTTTCCCBSSS
T ss_pred hCCcEE--EcccchHHHHHHHHHHHHHHHhhcCcc----cCCCeeecccccccccCCCCccccCCCCCCeeeCcC
Confidence 577766 59999999999777777655 410 01233334311 36777789 899999999998865
No 52
>2ip1_A Tryptophanyl-tRNA synthetase; rossmann fold, structural genomics, PSI-2, protein structure initiative; HET: PG4; 1.80A {Saccharomyces cerevisiae} PDB: 3kt0_A* 3kt3_A* 3kt6_A* 3kt8_A*
Probab=93.93 E-value=0.031 Score=57.96 Aligned_cols=59 Identities=14% Similarity=0.172 Sum_probs=38.9
Q ss_pred CCceEEEEeeCcccchHHHHHHHHHHcCCCCCCCCCCCceEEEEeEEEECCCC--cceeeecCC-eecHHHH
Q 010356 294 KAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDG--KRLRTRFSE-VVRLVDL 362 (512)
Q Consensus 294 ~~d~~iyV~g~~q~~hf~~l~~~~~~~g~~~~~~~~~~~~~Hv~~g~V~~~~g--~kmSkR~G~-~v~l~dl 362 (512)
+++.+ .+|.||..|+..-..++..+|+. .+...|. .+|.+-+| +|||||.|| .|.|.|=
T Consensus 249 ~~~lv--p~G~DQ~~~i~l~Rdla~r~~~~------~p~~l~~--~ll~gLdG~~~KMSKS~~nsaI~L~d~ 310 (432)
T 2ip1_A 249 TPCLI--PCAIDQDPYFRVCRDVADKLKYS------KPALLHS--RFFPALQGSTTKMSASDDTTAIFMTDT 310 (432)
T ss_dssp CCEEE--EEEGGGHHHHHHHHHHHHHHTSC------CCEEEEE--CCCCCTTC--------CGGGCCBTTCC
T ss_pred CceEE--EeccCcHHHHHHHHHHHHHhCCC------Cceeecc--ccccCCCCCccccCCCCCCCeEeccCC
Confidence 44444 48999999999888888999973 2333444 56777888 899999999 8888653
No 53
>3tzl_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta structure; HET: ADP TRP; 2.15A {Campylobacter jejuni subsp} SCOP: c.26.1.0 PDB: 3m5w_A*
Probab=93.63 E-value=0.012 Score=58.89 Aligned_cols=66 Identities=14% Similarity=0.226 Sum_probs=43.9
Q ss_pred cCCceEEEEeeCcccchHHHHHHHHHHcCCCCCCCCC-CCceEEE-EeEEEECCCCcceeeecCCeecHHH
Q 010356 293 EKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDST-YPKASHV-GFGLVLGEDGKRLRTRFSEVVRLVD 361 (512)
Q Consensus 293 ~~~d~~iyV~g~~q~~hf~~l~~~~~~~g~~~~~~~~-~~~~~Hv-~~g~V~~~~g~kmSkR~G~~v~l~d 361 (512)
++++.+ .+|.||..|+..-..++..+|..-+ +-+ .+...|. ...+|.+-+|+|||||.||.|.|.|
T Consensus 138 ~~~~~v--pvG~DQ~~hi~l~Rdia~r~n~~~g-~~f~~P~~~~~~~~~~l~~l~G~KMSKS~~n~I~L~d 205 (322)
T 3tzl_A 138 FDTRIV--PVGKDQIQHVEIARDIALKVNNEWG-EIFTLPEARVNEEVAVVVGTDGAKMSKSYQNTIDIFS 205 (322)
T ss_dssp TTCSEE--ECCGGGHHHHHHHHHHHHHHHHHHC-SCSCCCEEECCCSSCCCBCTTSSBCCGGGTCCCBSSC
T ss_pred hCCcEE--EeccchHHHHHHHHHHHHHhccccc-CCCCCchhhhccccccccCCCCCcCCCCCCCceecCC
Confidence 567766 4899999999877777776653100 001 2222331 1346777789999999999998864
No 54
>1yi8_B Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2.10A {Deinococcus radiodurans} PDB: 1yia_B* 1yid_B* 2a4m_A*
Probab=93.21 E-value=0.027 Score=56.87 Aligned_cols=67 Identities=18% Similarity=0.141 Sum_probs=42.6
Q ss_pred cCCceEEEEeeCcccchHHHHHHHHHHcCCCCCCCCC-CCceEEEEeEEEECCCCc-ceeeecCCeecHHHH
Q 010356 293 EKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDST-YPKASHVGFGLVLGEDGK-RLRTRFSEVVRLVDL 362 (512)
Q Consensus 293 ~~~d~~iyV~g~~q~~hf~~l~~~~~~~g~~~~~~~~-~~~~~Hv~~g~V~~~~g~-kmSkR~G~~v~l~dl 362 (512)
++++.+ .+|.||..|+..-..++..++...+ .-+ .+...+....+|.+-+|+ |||||.||.|.|.|=
T Consensus 161 ~~~~~v--pvG~DQ~~hi~l~rdia~r~n~~yg-~~f~~P~~~~~~~~~l~~ldG~~KMSKS~~n~I~L~d~ 229 (351)
T 1yi8_B 161 FGATLV--PVGDDQLPMLEQTREIVRRFNALYA-PVLAEPQAQLSRVPRLPGLDGQAKMSKSLGNAIALGDS 229 (351)
T ss_dssp HTCSEE--EECGGGHHHHHHHHHHHHHHHHHTC-SCSCCCEEEECSSCSCCCTTSSSCCCTTTTCCCBTTCC
T ss_pred cCCCEE--EecCCcHHHHHHHHHHHHHHHhhcc-cccCCCeeeeecCccccCCCCccccCCCCCCeecCCCC
Confidence 567766 5999999999977777766531000 001 222222112467777886 999999999988653
No 55
>1r6t_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytical domain, recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.10A {Homo sapiens} SCOP: a.16.1.3 c.26.1.1 PDB: 2azx_A* 2quh_A* 2qui_A* 2quj_A* 2quk_A
Probab=92.94 E-value=0.083 Score=55.49 Aligned_cols=58 Identities=21% Similarity=0.272 Sum_probs=43.9
Q ss_pred eeCcccchHHHHHHHHHHcCCCCCCCCCCCceEEEEeEEEECCCC--cceeeecCC-eecHHHHHHHHH
Q 010356 302 TDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDG--KRLRTRFSE-VVRLVDLLDEAK 367 (512)
Q Consensus 302 ~g~~q~~hf~~l~~~~~~~g~~~~~~~~~~~~~Hv~~g~V~~~~g--~kmSkR~G~-~v~l~dll~~~~ 367 (512)
+|.||..|+..-..++..+|+. .+...|. -+|.+.+| +|||||.|| .|.|.|==+++.
T Consensus 309 vG~DQ~~~i~l~Rdla~r~~~~------~p~~l~~--pll~gLdG~~~KMSKS~~nsaI~L~d~p~~i~ 369 (477)
T 1r6t_A 309 CAIDQDPYFRMTRDVAPRIGYP------KPALLHS--TFFPALQGAQTKMSASDPNSSIFLTDTAKQIK 369 (477)
T ss_dssp EEGGGHHHHHHHHHHGGGGTCC------CCEEEEE--CCCEETTEEEEECCTTSTTCCCBTTCCHHHHH
T ss_pred ccccHHHHHHHHHHHHHHhCCC------Cceeeec--ccccCCCCCccccCCCCCCCceeecCCHHHHH
Confidence 6999999998888888888863 2334454 46777888 799999999 898876544443
No 56
>1y42_X Tyrosyl-tRNA synthetase, mitochondrial; CYT-18, tRNA ligase, group I intron; HET: TYR; 1.95A {Neurospora crassa} PDB: 2rkj_A
Probab=92.92 E-value=0.024 Score=58.03 Aligned_cols=65 Identities=9% Similarity=0.022 Sum_probs=42.5
Q ss_pred cCCceEEEEeeCcccchHHHHHHHHHHcCC-----------CCCCCCCCCceEEEEeEEEECCCCcceeeecCCeecHHH
Q 010356 293 EKAEWIIYVTDVGQQLHFDMVFSAAKRAGW-----------LSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVD 361 (512)
Q Consensus 293 ~~~d~~iyV~g~~q~~hf~~l~~~~~~~g~-----------~~~~~~~~~~~~Hv~~g~V~~~~g~kmSkR~G~~v~l~d 361 (512)
++++.+ ++|.||..|+..-..++..++. .|.. .. .....+...+|.+.+|+|||||.||.|.|+|
T Consensus 231 ~~~~i~--~gG~DQ~~ni~~grdlarrfn~~~~~~~~~~~~~p~l-~~-~~~~~l~~pll~~ldG~KMSKS~~naI~L~d 306 (392)
T 1y42_X 231 QGVQMQ--IGGSDQYGNIISGLEVVKAARESEPDPQERKYVTPKT-AL-DECVGFTVPLLTDSSGAKFGKSAGNAIWLDP 306 (392)
T ss_dssp HCEEEE--EECTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHSCCS-GG-GSCEEEECCCCBCTTCCBTTBCSSSBCBSST
T ss_pred CCccEE--ecCcchHhHHHHHHHHHHHHhhhcccccccccccccc-cc-CCccccccccCcCCchhhccCCCCCeeeccC
Confidence 455544 5899999999877666655421 1100 00 1123334467888899999999999998875
No 57
>3vgj_A Tyrosyl-tRNA synthetase, putative; tyrrs, ligase; HET: YAP; 2.21A {Plasmodium falciparum}
Probab=92.47 E-value=0.058 Score=54.88 Aligned_cols=61 Identities=10% Similarity=0.055 Sum_probs=44.2
Q ss_pred cCCceEEEEeeCcccchHHHHHHHHHHcCCCCCCCCCCCceEEEEeEEEECC-CC-cceeeec-CCeecHHHH
Q 010356 293 EKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGE-DG-KRLRTRF-SEVVRLVDL 362 (512)
Q Consensus 293 ~~~d~~iyV~g~~q~~hf~~l~~~~~~~g~~~~~~~~~~~~~Hv~~g~V~~~-~g-~kmSkR~-G~~v~l~dl 362 (512)
+++|.+ .+|.||..|+..-..++..+|..+ .+.+.|. .+|.+- +| +|||||. ||.|.|.|=
T Consensus 199 l~ad~v--pgG~DQ~~~l~l~Rdla~r~~~~~-----~~~~l~~--p~l~gL~dG~~KMSKS~~~~~I~L~D~ 262 (373)
T 3vgj_A 199 LNVDIC--QLGIDQRKVNMLAREYCDIKKIKK-----KPVILSH--GMLPGLLEGQEKMSKSDENSAIFMDDS 262 (373)
T ss_dssp TTCSEE--CCBGGGHHHHHHHHHHHHHHTCSC-----CCEEEEB--CCCCCSSTTCCSCCSSSTTCCCBTTCC
T ss_pred cCCcEE--EcchhhHHHHHHHHHHHHHhCCCC-----CceEEeC--CeeecCCCCCCCCcCCCCCCeeecCCC
Confidence 467765 489999999998888899998742 2333444 467763 78 4999999 578887643
No 58
>3i05_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, LIG nucleotide-binding, protein biosynthesis; 2.80A {Trypanosoma brucei} SCOP: c.26.1.0
Probab=92.46 E-value=0.047 Score=55.91 Aligned_cols=53 Identities=25% Similarity=0.361 Sum_probs=31.5
Q ss_pred EeeCcccchHHHHHHHHHHcCCCCCCCCCCCceEEEEeEEEECCCC--cceeeecCCeecHHH
Q 010356 301 VTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDG--KRLRTRFSEVVRLVD 361 (512)
Q Consensus 301 V~g~~q~~hf~~l~~~~~~~g~~~~~~~~~~~~~Hv~~g~V~~~~g--~kmSkR~G~~v~l~d 361 (512)
.+|.||..|+..-..++..+|+. .+...|. .+|.+-+| +|||||.||.|.|.|
T Consensus 229 p~G~DQ~~~i~l~Rdla~r~~~~------~p~~l~~--~~l~gLdG~~~KMSKS~~~~I~L~D 283 (395)
T 3i05_A 229 PQAIDQDPYFRLTRDIAPRLGYL------KPAVIHS--KFFPGLSGPKGKMSSSSGTAVLLTD 283 (395)
T ss_dssp EEEGGGHHHHHHHHHTHHHHTCC------CCEEEEE--CCCCCC-------------CCBTTC
T ss_pred EeccchHHHHHHHHHHHHHcCCC------Cceeecc--ccccCCCCCcccCCCCCCCcccCCC
Confidence 58999999999888888899874 2334454 45777788 799999999998865
No 59
>1r6u_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytic domain, AN recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.00A {Homo sapiens} SCOP: c.26.1.1 PDB: 1ulh_A 2dr2_A* 2ake_A* 1o5t_A
Probab=92.27 E-value=0.037 Score=57.39 Aligned_cols=53 Identities=21% Similarity=0.276 Sum_probs=41.2
Q ss_pred eeCcccchHHHHHHHHHHcCCCCCCCCCCCceEEEEeEEEECCCC--cceeeecCC-eecHHHH
Q 010356 302 TDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDG--KRLRTRFSE-VVRLVDL 362 (512)
Q Consensus 302 ~g~~q~~hf~~l~~~~~~~g~~~~~~~~~~~~~Hv~~g~V~~~~g--~kmSkR~G~-~v~l~dl 362 (512)
+|.||..|+..-..++..+|+. .+...|. .+|.+.+| +|||||.|| .|.|+|=
T Consensus 262 vG~DQ~~~i~l~Rdla~r~~~~------~P~~l~~--pll~gLdG~~~KMSKS~~nsaI~L~D~ 317 (437)
T 1r6u_A 262 CAIDQDPYFRMTRDVAPRIGYP------KPALLHS--TFFPALQGAQTKMSASDPNSSIFLTDT 317 (437)
T ss_dssp EEGGGHHHHHHHHHHGGGGTCC------CCEEEEE--CCCEETTEEEEECCTTSSSSCCBTTCC
T ss_pred eehhhHHHHHHHHHHHHHhCCC------CceEeec--ccccCCCCCccccCCCCCCCeeeccCC
Confidence 6999999998888888888863 2333444 56777888 799999999 8988653
No 60
>3hv0_A Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, ligase, nucleotide-binding; HET: TRP; 2.42A {Cryptosporidium parvum iowa II} SCOP: c.26.1.0
Probab=92.19 E-value=0.043 Score=56.16 Aligned_cols=53 Identities=23% Similarity=0.340 Sum_probs=30.9
Q ss_pred EeeCcccchHHHHHHHHHHcCCCCCCCCCCCceEEEEeEEEECCCC--cceeeecCC-eecHHH
Q 010356 301 VTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDG--KRLRTRFSE-VVRLVD 361 (512)
Q Consensus 301 V~g~~q~~hf~~l~~~~~~~g~~~~~~~~~~~~~Hv~~g~V~~~~g--~kmSkR~G~-~v~l~d 361 (512)
.+|.||..|+..-..++..+|+. .+...|. .+|.+-+| +|||||.|| .|.|.|
T Consensus 225 p~G~DQ~~~i~l~Rdla~r~~~~------~p~~l~~--~~l~gLdG~~~KMSKS~~nsaI~L~D 280 (393)
T 3hv0_A 225 PHAIDQDPYFRMVRDVAPRLGYL------KPSSIHS--IFLPSLQGSQTKMSASVQNSSIFVND 280 (393)
T ss_dssp EEEGGGHHHHHHHHHHTGGGTCC------CCEEEEE--CCCCC-------------CCCCBTTC
T ss_pred ccccchHHHHHHHHHHHHHcCCC------Cceeecc--CcccCCCCCCcCCCCCCCCCeEeccC
Confidence 58999999998888888888874 2334454 45777788 799999987 788764
No 61
>3tze_A Tryptophanyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, amino acylation; HET: TRP; 2.60A {Encephalitozoon cuniculi}
Probab=91.91 E-value=0.075 Score=54.57 Aligned_cols=53 Identities=23% Similarity=0.248 Sum_probs=40.9
Q ss_pred EeeCcccchHHHHHHHHHHcCCCCCCCCCCCceEEEEeEEEECCCC--cceeeec-CCeecHHH
Q 010356 301 VTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDG--KRLRTRF-SEVVRLVD 361 (512)
Q Consensus 301 V~g~~q~~hf~~l~~~~~~~g~~~~~~~~~~~~~Hv~~g~V~~~~g--~kmSkR~-G~~v~l~d 361 (512)
.+|.||..|+..-..++..+|+. .+...|. .+|.+-+| +|||||. |+.|.|.|
T Consensus 248 pvG~DQ~~~i~l~Rdla~r~~~~------~p~~l~~--~~l~gLdG~~~KMSKS~~~~~I~L~D 303 (406)
T 3tze_A 248 PAAVDQDPFFRLARDKAKALGEK------KPSSIYV--SLLPDLKGVNRKMSASDPNSSIYLDD 303 (406)
T ss_dssp EEEGGGHHHHHHHHHHHHHHTCC------CCEEEEE--CCCCCTTSCCCCSSCSCGGGSCBTTC
T ss_pred eeccchHHHHHHHHHHHHHcCCC------Cceeecc--CcccCCCCCCcCCCCCCCCCcccCCC
Confidence 47999999999888889999973 2334454 45777788 6999998 68888764
No 62
>3jxe_A Tryptophanyl-tRNA synthetase; adenosine triphosphate, rossmann fold, crystallography, X-RAY, P. horikoshii, aminoacyl-tRNA synthetase; HET: TYM; 3.00A {Pyrococcus horikoshii}
Probab=91.78 E-value=0.052 Score=55.51 Aligned_cols=57 Identities=16% Similarity=0.193 Sum_probs=42.3
Q ss_pred EeeCcccchHHHHHHHHHHcCCCCCCCCCCCceEEEEeEEEECCCC--cceeeecCC-eecHHHHHHH
Q 010356 301 VTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDG--KRLRTRFSE-VVRLVDLLDE 365 (512)
Q Consensus 301 V~g~~q~~hf~~l~~~~~~~g~~~~~~~~~~~~~Hv~~g~V~~~~g--~kmSkR~G~-~v~l~dll~~ 365 (512)
.+|.||..|+..-..++..+|+. .+...|. .+|.+-+| +|||||.+| .|.|.|=-++
T Consensus 212 pvG~DQ~~hl~l~Rdla~r~n~~------~p~~l~~--~~l~gLdG~~~KMSKS~~ns~I~L~D~p~~ 271 (392)
T 3jxe_A 212 PAAIDQDPYWRLQRDFAESLGYY------KTAALHS--KFVPSLTSLSGKMSASKPETAIYLTDSPED 271 (392)
T ss_dssp EEEGGGHHHHHHHHHHTGGGTSC------CCEEEEE--CCCCCSSCSSSCCCTTSGGGCCBTTCCHHH
T ss_pred ecccchHHHHHHHHHHHHHcCCC------CCeeeec--ccccCCCCCccccccCCCCCeeeCCCCHHH
Confidence 68999999999888888888873 2344454 45766677 599999998 8877643333
No 63
>2yy5_A Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synthetase, structural genomics, NPPSFA; HET: WSA; 2.55A {Mycoplasma pneumoniae}
Probab=91.72 E-value=0.042 Score=55.40 Aligned_cols=68 Identities=13% Similarity=0.086 Sum_probs=42.4
Q ss_pred cCCceEEEEeeCcccchHHHHHHHHHHcCCCCCCCCCCCceEEEE-eEEEECCCC--cceeeecCC---eecHHHH
Q 010356 293 EKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVG-FGLVLGEDG--KRLRTRFSE---VVRLVDL 362 (512)
Q Consensus 293 ~~~d~~iyV~g~~q~~hf~~l~~~~~~~g~~~~~~~~~~~~~Hv~-~g~V~~~~g--~kmSkR~G~---~v~l~dl 362 (512)
+++|.+ .+|.||..|+..-..++..+|..-+..-..+...|.. ..+|.+-+| +|||||.|| +|.|.|=
T Consensus 146 ~~a~~v--pvG~DQ~~~lel~Rdia~r~n~~yg~~f~~P~~l~~~~~~~l~gL~g~~~KMSKS~~n~~~~I~L~D~ 219 (348)
T 2yy5_A 146 YQPDIV--PVGNDQKQHLELTRDLAQRIQKKFKLKLRLPQFVQNKDTNRIMDLFDPTKKMSKSSKNQNGVIYLDDP 219 (348)
T ss_dssp TCCSEE--ECCGGGHHHHHHHHHHHHHHHHHHCCCCCCCEEECCTTTTTCBCSSCTTSBCCSSCSCGGGCCBTTCC
T ss_pred hCccEE--EecccHHHHHHHHHHHHHHhhhhcccccCCCeeecccccccccCCCCcchhcCCCCCCCCceEeecCC
Confidence 677877 4999999999877777777641000000023333311 134555566 899999999 7887653
No 64
>2j5b_A Tyrosyl-tRNA synthetase; ligase, protein biosynthesis, ATP-binding; HET: TYE; 2.20A {Acanthamoeba polyphaga mimivirus}
Probab=91.37 E-value=0.076 Score=53.52 Aligned_cols=62 Identities=11% Similarity=0.063 Sum_probs=44.4
Q ss_pred CCceEEEEeeCcccchHHHHHHHHHHcCCCCCCCCCCCceEEEEeEEEECC-CC-cceeeec-CCeecHHHHHHH
Q 010356 294 KAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGE-DG-KRLRTRF-SEVVRLVDLLDE 365 (512)
Q Consensus 294 ~~d~~iyV~g~~q~~hf~~l~~~~~~~g~~~~~~~~~~~~~Hv~~g~V~~~-~g-~kmSkR~-G~~v~l~dll~~ 365 (512)
++|.+ .+|.||..|+..-..++..+|... +...|. .+|.+- +| +|||||. |+.|.|.|=-++
T Consensus 186 ~~~~~--~~G~DQ~~~i~l~Rdia~r~~~~~------p~~~~~--~~l~gL~dg~~KMSKS~~~~~I~L~d~p~~ 250 (348)
T 2j5b_A 186 GIDIC--QLGIDQRKVNMLAIEYANDRGLKI------PISLSH--HMLMSLSGPKKKMSKSDPQGAIFMDDTEQE 250 (348)
T ss_dssp CCSEE--CCBGGGHHHHHHHHHHHHHTTCCC------CEEEEB--CCCCCTTCSSCCCSTTCGGGSCBTTCCHHH
T ss_pred CCcEE--EeccChHHHHHHHHHHHHHhCCCC------ceeecC--ccccCCCCcccccccCCCCCeEeecCCHHH
Confidence 67765 479999999988888889998741 333443 456655 56 6999998 588987654333
No 65
>1i6k_A TRPRS, tryptophanyl-tRNA synthetase; class I tRNA synthetase, AARS, induced FIT, ligase; HET: TYM; 1.72A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 1i6l_A* 1i6m_A* 1m83_A* 1mau_A* 1maw_A* 1mb2_A* 2ov4_A* 3fhj_A* 3fi0_A* 1d2r_A 3u1v_A
Probab=90.92 E-value=0.09 Score=52.53 Aligned_cols=67 Identities=13% Similarity=0.091 Sum_probs=42.1
Q ss_pred cCCceEEEEeeCcccchHHHHHHHHHHcCCCCCCCCC-CCceEEE-EeEEEECCCC--cceeeecCC-e--ecHHHH
Q 010356 293 EKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDST-YPKASHV-GFGLVLGEDG--KRLRTRFSE-V--VRLVDL 362 (512)
Q Consensus 293 ~~~d~~iyV~g~~q~~hf~~l~~~~~~~g~~~~~~~~-~~~~~Hv-~~g~V~~~~g--~kmSkR~G~-~--v~l~dl 362 (512)
++++.+ .+|.||..|+..-..++..+|...+ .-+ .+...+. ...+|.+-+| +|||||.|| . |.|.|=
T Consensus 136 ~~~~~v--pvG~DQ~~~iel~Rdia~r~n~~yg-~~f~~P~~li~~~~~~l~gl~G~~~KMSKS~~n~~~~I~L~d~ 209 (328)
T 1i6k_A 136 YNTDIV--PVGEDQKQHIELTRDLAERFNKRYG-ELFTIPEARIPKVGARIMSLVDPTKKMSKSDPNPKAYITLLDD 209 (328)
T ss_dssp TTCSEE--ECCGGGHHHHHHHHHHHHHHHHHHC-SCCCCCEEECCSSSSSCBCSSCTTSBCCTTCSCGGGCCBTTCC
T ss_pred hCCCEE--ecccchHHHHHHHHHHHHHhCcccc-cccCCCeeeeccccccccCCCCCccCCCCCCCCcCceeeecCC
Confidence 577766 4999999999987777777662000 000 1222221 1134556677 899999999 6 877643
No 66
>3hzr_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, structural genomics, medical structural GEN pathogenic protozoa, MSGPP, ligase; 3.00A {Entamoeba histolytica}
Probab=90.90 E-value=0.17 Score=51.64 Aligned_cols=52 Identities=12% Similarity=0.120 Sum_probs=40.3
Q ss_pred eeCcccchHHHHHHHHHHcCCCCCCCCCCCceEEEEeEEEECCCCc-ceeee-cCCeecHHH
Q 010356 302 TDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGK-RLRTR-FSEVVRLVD 361 (512)
Q Consensus 302 ~g~~q~~hf~~l~~~~~~~g~~~~~~~~~~~~~Hv~~g~V~~~~g~-kmSkR-~G~~v~l~d 361 (512)
+|.||..|+..-..++..+|+. .+...|. .+|.+-+|. ||||| .||.|.|.|
T Consensus 230 vG~DQ~~hl~l~Rdla~r~n~~------~p~~l~~--~~l~gLdG~~KMSKSd~~~~I~L~D 283 (386)
T 3hzr_A 230 DSIKNVQFHSIIDQIATTLNFI------QPTVLFH--KMVPLLSGVTKFDIPSDHNSILLSD 283 (386)
T ss_dssp EEGGGHHHHHHHHHHHHHHTCC------CCEEEEE--CCCCCTTCTTCCCCCCTTTSCBTTC
T ss_pred cccchHHHHHHHHHHHHHcCCC------CceEeec--CeeeCCCCCCccCcCCCCCeeecCC
Confidence 5999999999888899999973 1333444 457777785 99999 799998765
No 67
>2cyc_A Tyrosyl-tRNA synthetase; tyrosine, tyrrs, aminoacylation, structural genomics; HET: TYR; 2.20A {Pyrococcus horikoshii}
Probab=89.18 E-value=0.16 Score=51.77 Aligned_cols=66 Identities=15% Similarity=0.151 Sum_probs=44.2
Q ss_pred cCCceEEEEeeCcccchHHHHHHHHHHcCCCCCC---CCCCCceEEEEeEEEECCCC------------------cceee
Q 010356 293 EKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSAD---DSTYPKASHVGFGLVLGEDG------------------KRLRT 351 (512)
Q Consensus 293 ~~~d~~iyV~g~~q~~hf~~l~~~~~~~g~~~~~---~~~~~~~~Hv~~g~V~~~~g------------------~kmSk 351 (512)
+++|.+ .+|.||..|+..-..++..+|..++. ..+.+...|. .+|.+-+| +||||
T Consensus 179 ~~~~~v--p~G~DQ~~~i~l~rdla~r~n~~~~~~~g~~~~~~~~~~--~~l~gL~g~~~~~~~~~~~~~~~~~~~KMSK 254 (375)
T 2cyc_A 179 QGVTIA--HAGMDQRKAHVIAIEVAQKLRYHPIVHEGEKLKPVAVHH--HLLLGLQEPPKWPIESEEEFKEIKAQMKMSK 254 (375)
T ss_dssp TTCSEE--EEEGGGHHHHHHHHHHGGGCSSSCEEETTEEECCEEEEE--CCCBCSSCCSSSSCCSHHHHHHHHHHHBGGG
T ss_pred hCCCee--cccchHHHHHHHHHHHHHHhCCcccccccccCccEEecc--ccccCCCCcccccccchhhhhhhhhhhcccC
Confidence 567766 48999999998888888888761000 0001223343 56777777 89999
Q ss_pred ec-CCeecHHHH
Q 010356 352 RF-SEVVRLVDL 362 (512)
Q Consensus 352 R~-G~~v~l~dl 362 (512)
|. |+.|.|.|=
T Consensus 255 S~~~~~I~L~d~ 266 (375)
T 2cyc_A 255 SKPYSAVFIHDS 266 (375)
T ss_dssp SCGGGSCBTTCC
T ss_pred CCCCCeeccCCC
Confidence 98 788887654
No 68
>3a04_A Tryptophanyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding, protein biosynthesis; 1.97A {Aeropyrum pernix} PDB: 3a05_A*
Probab=88.31 E-value=0.26 Score=50.06 Aligned_cols=57 Identities=19% Similarity=0.246 Sum_probs=40.2
Q ss_pred EeeCcccchHHHHHHHHHHcCCCCCCCCCCCceEEEEeEEEECCCCcceeeec-CCeecHHH
Q 010356 301 VTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRF-SEVVRLVD 361 (512)
Q Consensus 301 V~g~~q~~hf~~l~~~~~~~g~~~~~~~~~~~~~Hv~~g~V~~~~g~kmSkR~-G~~v~l~d 361 (512)
-+|.||..|+..-..++..+|.... ...+...|. .++.+-+|+|||||. ++.|.+.|
T Consensus 213 PVG~DQ~~hleltRdiA~rfn~~~~--~~~P~~~~~--~~~pgldG~KmS~S~~ns~I~l~D 270 (372)
T 3a04_A 213 PVGADQDPHLRLTRDLADRMAGVVE--LERPASTYH--KLQPGLDGRKMSSSRPDSTIFLTD 270 (372)
T ss_dssp EEEGGGHHHHHHHHHHHHHTTTTSC--CCCCEEEEE--CCCBCTTSSBCCTTSGGGSCBTTC
T ss_pred ccchhhHHHHHHHHHHHHHhcCccc--ccChhhhhh--cccCCCCCCccCCCCCCcccccCC
Confidence 5799999999988888988874321 112344554 456777899999987 55677654
No 69
>3foc_A Tryptophanyl-tRNA synthetase; structural genomics, giardiasi aminoacyl-tRNA synthetase, ligase; 2.09A {Giardia lamblia atcc 50803}
Probab=87.76 E-value=0.13 Score=53.42 Aligned_cols=53 Identities=17% Similarity=0.188 Sum_probs=38.9
Q ss_pred EeeCcccchHHHHHHHHHHcCCCCCCCCCCCceEEEEeEEEECCCCc--ceeeecCC-eecHHH
Q 010356 301 VTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGK--RLRTRFSE-VVRLVD 361 (512)
Q Consensus 301 V~g~~q~~hf~~l~~~~~~~g~~~~~~~~~~~~~Hv~~g~V~~~~g~--kmSkR~G~-~v~l~d 361 (512)
-+|.||..|+..-..++..+|+. .+.+.|. .+|.+-+|. |||||.+| .|.+.|
T Consensus 292 PvG~DQ~~hlel~Rdia~rfn~~------~p~~~~~--~~l~gLdG~~~KMSKS~~ns~I~l~D 347 (451)
T 3foc_A 292 ASGIEQDPYFRLARDLAPRMGHP------KNAYLLG--KFLPGLQGSGTKMSASDPNSAIYLTD 347 (451)
T ss_dssp EECTTTHHHHHHHHHHTTTTTSC------CCEEEEE--CCCCBTTBTTCCCCTTCGGGSCBTTC
T ss_pred eeecchHHHHHHHHHHHHHhCCC------CCeeecC--CcccCCCCCCCccCCCCCCCeeeecC
Confidence 46999999998888888888873 2334454 456666664 99999987 677643
No 70
>2el7_A Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synthetase, translation, structural GEN NPPSFA; 2.50A {Thermus thermophilus}
Probab=83.83 E-value=0.33 Score=48.57 Aligned_cols=39 Identities=15% Similarity=0.193 Sum_probs=28.7
Q ss_pred eeCCCCCCCCcccchhhhhHHHHHHHHHHHCC-CeEEEeeccCcc
Q 010356 91 FSSPNIAKEMHVGHLRSTIIGDSLARMLEFSN-VEVLRRNHVGDW 134 (512)
Q Consensus 91 ~~spNp~~~lHvGH~R~~iiGD~lar~l~~~G-~~V~~~~~i~D~ 134 (512)
||+--|||+|||||+..++ --+.+ |+..| |+| ...|+||
T Consensus 5 y~G~~PTg~lHlGh~~g~l--~~~~~-lQ~~G~~~~--~~~IaD~ 44 (337)
T 2el7_A 5 LSGIQPSGEIHIGNYLGAI--KQWVA-IGEKLGRDA--FFCIVDY 44 (337)
T ss_dssp EEEECSCSCCBHHHHHTHH--HHHHH-HHHHHGGGE--EEEECGG
T ss_pred EEeeCCCCcccHHHHHHHH--HHHHH-HHhcCCCCE--EEEEeCc
Confidence 8889999999999988664 22223 45568 998 5677885
No 71
>3sz3_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, rossmann fold; HET: TRP; 1.50A {Vibrio cholerae o1 biovar el tor}
Probab=81.73 E-value=0.22 Score=49.93 Aligned_cols=67 Identities=15% Similarity=0.121 Sum_probs=39.1
Q ss_pred cCCceEEEEeeCcccchHHHHHHHHHHcC--CCCCCCCCCC--ceEEEEeEEEECC-CC-cceeeec---CCeecHHH
Q 010356 293 EKAEWIIYVTDVGQQLHFDMVFSAAKRAG--WLSADDSTYP--KASHVGFGLVLGE-DG-KRLRTRF---SEVVRLVD 361 (512)
Q Consensus 293 ~~~d~~iyV~g~~q~~hf~~l~~~~~~~g--~~~~~~~~~~--~~~Hv~~g~V~~~-~g-~kmSkR~---G~~v~l~d 361 (512)
+++|.+ .+|.||..|+..-..++..+| |..+.+.+.. .+.+-...+|.+- +| +|||||. ||.|.+.|
T Consensus 142 ~~ad~v--pvG~DQ~~hlel~Rdia~rfn~~yg~~~~~f~~p~~li~~~~~~l~gL~dg~~KMSKS~~~~~~~I~L~D 217 (341)
T 3sz3_A 142 YGAHQV--PVGSDQKQHLELARDIATRFNNIYSPEQPIFTIPEPYIPTVNARVMSLQDATKKMSKSDDNRKNVITLLE 217 (341)
T ss_dssp TTCSEE--CCCGGGHHHHHHHHHHHHHHHHHHCSSSCSSCCCEECCCSCCCCCEETTEEEEECCTTCSCGGGCCBTTC
T ss_pred cCCCEE--EeccchHHHHHHHHHHHHHhchhccCCCcccccChhhhccCcccccCCCCCCCccCCCCCCCCCeeecCC
Confidence 467765 489999999988778887766 2100001111 1111001233333 56 6999999 78998754
No 72
>3hzr_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, structural genomics, medical structural GEN pathogenic protozoa, MSGPP, ligase; 3.00A {Entamoeba histolytica}
Probab=81.16 E-value=1.3 Score=45.06 Aligned_cols=44 Identities=23% Similarity=0.199 Sum_probs=31.3
Q ss_pred ceEEEEeeCCCCCCCCcccchhhhhHHHHHHHHHHH-CCCeEEEeeccCccc
Q 010356 85 KKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEF-SNVEVLRRNHVGDWG 135 (512)
Q Consensus 85 ~~v~Ve~~spNp~~~lHvGH~R~~iiGD~lar~l~~-~G~~V~~~~~i~D~G 135 (512)
+++.| |++--|||++||||+-.+. +.|.|+. .|..|... |+|+.
T Consensus 81 ~~~~v-ysG~~PTG~lHLGh~v~~~----~~~~lQ~~~g~~v~i~--I~D~~ 125 (386)
T 3hzr_A 81 KPTFI-FIQKYPQKEVALEEYITLE----FARYLQDAFNIQVIIQ--ILDDI 125 (386)
T ss_dssp CCEEE-EEEECCCSSCBGGGHHHHH----HHHHHHHHHCCEEEEE--ECHHH
T ss_pred CCeEE-EeccCCCCCccHHHHHHHH----HHHHHHHhcCCeEEEE--eCchH
Confidence 34556 8999999999999955442 2344555 48888776 88864
No 73
>3prh_A Tryptophanyl-tRNA synthetase; TRPRS, protein biosynthesis, translation, class I tRNA synth rossman fold, high motif, KMSKS motif; 2.80A {Bacillus subtilis}
Probab=80.84 E-value=0.39 Score=48.88 Aligned_cols=66 Identities=14% Similarity=0.068 Sum_probs=39.2
Q ss_pred cCCceEEEEeeCcccchHHHHHHHHHHcCCCCCCCCCCCc--eEEEEeEEEECC-CC-cceeeec---CCeecHHH
Q 010356 293 EKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPK--ASHVGFGLVLGE-DG-KRLRTRF---SEVVRLVD 361 (512)
Q Consensus 293 ~~~d~~iyV~g~~q~~hf~~l~~~~~~~g~~~~~~~~~~~--~~Hv~~g~V~~~-~g-~kmSkR~---G~~v~l~d 361 (512)
+++|.+ .+|.||..|+..-..++..+|...+ +.+... +.+-...+|.+- +| +|||||. ||.|.|.|
T Consensus 170 ~~ad~v--PvG~DQ~~hleltRdia~rfn~~y~-~~f~~p~~li~~~~~~l~gL~dg~~KMSKS~~~~~n~I~L~D 242 (388)
T 3prh_A 170 YGTDLV--PPGEDQKQHLELTRNLAERFNKKYN-DIFTIPEVKIPKVGARIMSLNDPLKKMSKSDPNQKAYITLLD 242 (388)
T ss_dssp TTCCEE--CCCSSCHHHHHHHHHHHHHHHHHTC-SCCCCCEECCCSCCCCCBCSSCTTSBCCTTCSSTTSCCBTTC
T ss_pred hCCCEE--EechhHHHHHHHHHHHHHHhCcccC-CCcccchhhhcccccccccCCCCCCccCCCCCCCCCeeecCC
Confidence 567766 4899999999988888887774210 011110 110000122222 44 7999999 89998754
No 74
>3n9i_A Tryptophanyl-tRNA synthetase; tryptophan-tRNA ligase, csgid, structural genomics, niaid, center for structural genomics infectious diseases; 1.95A {Yersinia pestis} SCOP: c.26.1.1
Probab=79.59 E-value=0.38 Score=48.22 Aligned_cols=64 Identities=16% Similarity=0.156 Sum_probs=38.5
Q ss_pred cCCceEEEEeeCcccchHHHHHHHHHHcC--CCCCCCCCC-C-ceEEEEeEEEECC-CC-cceeeecC---CeecHHH
Q 010356 293 EKAEWIIYVTDVGQQLHFDMVFSAAKRAG--WLSADDSTY-P-KASHVGFGLVLGE-DG-KRLRTRFS---EVVRLVD 361 (512)
Q Consensus 293 ~~~d~~iyV~g~~q~~hf~~l~~~~~~~g--~~~~~~~~~-~-~~~Hv~~g~V~~~-~g-~kmSkR~G---~~v~l~d 361 (512)
+++|.+ .+|.||..|+..-..++..+| |.. .+. + .+.+-...+|.+- +| +|||||.+ |.|.|.|
T Consensus 151 ~~ad~v--pvG~DQ~~hleltRdia~rfn~~yg~---~f~~p~~li~~~~~~l~gL~dg~~KMSKS~~~~~~~I~L~D 223 (346)
T 3n9i_A 151 YQTNQV--PVGEDQKQHLELSRDIASRFNNLYGD---IFKIPEPFIPKAGARVMSLQDPTKKMSKSDDNRNNVIELLE 223 (346)
T ss_dssp TTCSEE--CCCGGGHHHHHHHHHHHHHHHHHHSS---CSCCCEECCCCCCCCCBCSSCTTSBCCTTCSCGGGCCBTTS
T ss_pred hCceEE--EeccchHHHHHHHHHHHHHhccccCC---cccccchhccCCcccCccCCCCccccCCCCCCCCceecCCC
Confidence 567766 489999999998888888776 210 111 1 1111000123333 56 59999987 6887754
No 75
>3a04_A Tryptophanyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding, protein biosynthesis; 1.97A {Aeropyrum pernix} PDB: 3a05_A*
Probab=78.35 E-value=1.3 Score=44.86 Aligned_cols=44 Identities=16% Similarity=0.194 Sum_probs=30.9
Q ss_pred CceEEEEeeCCCCCCCCcccchhhhhHHHHHHHHHHHCCCeEEEeeccCcc
Q 010356 84 VKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDW 134 (512)
Q Consensus 84 ~~~v~Ve~~spNp~~~lHvGH~R~~iiGD~lar~l~~~G~~V~~~~~i~D~ 134 (512)
+++..| |++--|+|++|+||.-.+ .-.+.+...|++|. ..|.||
T Consensus 68 gk~~~v-~sG~~PTG~lHLGhyv~~----~~~~~lq~~~~~~~--~~IaD~ 111 (372)
T 3a04_A 68 GERVAV-LTGFMPSGKFHFGHKLTV----DQLIYLQKNGFKVF--VAIADA 111 (372)
T ss_dssp TCCCEE-EEEECCCSCCBHHHHHHH----HHHHHHHHTTCEEE--EEECHH
T ss_pred CCCCEE-EeCcCCCcHhHHHHHHHH----HHHHHHHhCCCeEE--EEEecc
Confidence 344556 899999999999996422 23455666799985 457775
No 76
>1i6k_A TRPRS, tryptophanyl-tRNA synthetase; class I tRNA synthetase, AARS, induced FIT, ligase; HET: TYM; 1.72A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 1i6l_A* 1i6m_A* 1m83_A* 1mau_A* 1maw_A* 1mb2_A* 2ov4_A* 3fhj_A* 3fi0_A* 1d2r_A 3u1v_A
Probab=75.48 E-value=1 Score=44.74 Aligned_cols=38 Identities=13% Similarity=0.195 Sum_probs=27.9
Q ss_pred eeCCCCCCCCcccchhhhhHHHHHHHHHHHCCCeEEEeeccCcc
Q 010356 91 FSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDW 134 (512)
Q Consensus 91 ~~spNp~~~lHvGH~R~~iiGD~lar~l~~~G~~V~~~~~i~D~ 134 (512)
||+--|||.|||||+..++ --+.+ |+. ||++ ...|+||
T Consensus 5 ysG~~PTG~lHlGn~vg~l--~~~~~-lQ~-g~~~--~~~IaD~ 42 (328)
T 1i6k_A 5 FSGIQPSGVITIGNYIGAL--RQFVE-LQH-EYNC--YFCIVDQ 42 (328)
T ss_dssp EEEECCCSCCBHHHHHHTH--HHHHH-HTT-TSEE--EEEECHH
T ss_pred EEeeCCCCcccHHHHHHHH--HHHHH-HHc-CCcE--EEEEeCc
Confidence 8899999999999988776 22222 344 9987 5667884
No 77
>3vgj_A Tyrosyl-tRNA synthetase, putative; tyrrs, ligase; HET: YAP; 2.21A {Plasmodium falciparum}
Probab=74.24 E-value=2.1 Score=43.33 Aligned_cols=39 Identities=13% Similarity=0.374 Sum_probs=27.3
Q ss_pred eeCCCCCCCCcccchhhhhHHHHHHHHHHHCCCeEEEeeccCcc
Q 010356 91 FSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDW 134 (512)
Q Consensus 91 ~~spNp~~~lHvGH~R~~iiGD~lar~l~~~G~~V~~~~~i~D~ 134 (512)
|++--|||.+|+|| .++--...+-|...|++|+. .|+||
T Consensus 60 y~G~~PTg~lHlG~---gvl~~~~~~~lQ~~G~~~~~--lIaD~ 98 (373)
T 3vgj_A 60 YDGFEPSGRMHIAQ---GLLKSIIVNKLTSNGCTFIF--WIADW 98 (373)
T ss_dssp EEEECCCSSCBHHH---HHHHHHHHHHHHTTTCEEEE--EECHH
T ss_pred EeCCCCCCCceehh---hHHHHHHHHHHHHCCCcEEE--EEecc
Confidence 89999999999999 33333223445567998765 56775
No 78
>3jxe_A Tryptophanyl-tRNA synthetase; adenosine triphosphate, rossmann fold, crystallography, X-RAY, P. horikoshii, aminoacyl-tRNA synthetase; HET: TYM; 3.00A {Pyrococcus horikoshii}
Probab=70.83 E-value=2.1 Score=43.57 Aligned_cols=41 Identities=17% Similarity=0.290 Sum_probs=29.5
Q ss_pred EEEEeeCCCCCCCCcccchhhhhHHHHHHHHHHH-CCCeEEEeeccCcc
Q 010356 87 AVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEF-SNVEVLRRNHVGDW 134 (512)
Q Consensus 87 v~Ve~~spNp~~~lHvGH~R~~iiGD~lar~l~~-~G~~V~~~~~i~D~ 134 (512)
+.| |++--|||.+|+||.-.++ +.|.|+. .|++|+. .|+|+
T Consensus 74 ~~i-~sG~~PTG~lHLGh~v~~~----~~~~lQ~~~g~~~~i--~IaD~ 115 (392)
T 3jxe_A 74 FFL-YTGRGPSGPMHIGHIIPFF----ATKWLQEKFGVNLYI--QITDD 115 (392)
T ss_dssp CEE-EEEECCSSCCBHHHHHHHH----HHHHHHHHHCCEEEE--EECHH
T ss_pred eEE-EeccCCCCchhHHHHHHHH----HHHHHHHhcCCceEE--Eecch
Confidence 445 8899999999999976543 3444655 7988775 46774
No 79
>1yi8_B Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2.10A {Deinococcus radiodurans} PDB: 1yia_B* 1yid_B* 2a4m_A*
Probab=69.94 E-value=1.7 Score=43.59 Aligned_cols=39 Identities=21% Similarity=0.308 Sum_probs=28.0
Q ss_pred EEEEeeCCCCCCCCcccchhhhhHHHHHHHH--HHHCCCeEEEeeccCcc
Q 010356 87 AVVDFSSPNIAKEMHVGHLRSTIIGDSLARM--LEFSNVEVLRRNHVGDW 134 (512)
Q Consensus 87 v~Ve~~spNp~~~lHvGH~R~~iiGD~lar~--l~~~G~~V~~~~~i~D~ 134 (512)
..| ||+--|||+|||||+..++ .++ |+.. |+| ...|+||
T Consensus 23 ~~v-ysG~~PTG~lHLGn~~g~l-----~~~~~lQ~~-~~~--~~~IaD~ 63 (351)
T 1yi8_B 23 PRV-LTGDRPTGALHLGHLAGSL-----QNRVRLQDE-AEL--FVLLADV 63 (351)
T ss_dssp SEE-EEEECCSSCCBHHHHHHTH-----HHHHHHTSS-SEE--EEEECHH
T ss_pred cEE-EEeeCCCCCccHHHHHHHH-----HHHHHHHHh-CCe--EEEEecc
Confidence 344 8999999999999988764 233 4444 776 5567885
No 80
>1y42_X Tyrosyl-tRNA synthetase, mitochondrial; CYT-18, tRNA ligase, group I intron; HET: TYR; 1.95A {Neurospora crassa} PDB: 2rkj_A
Probab=69.21 E-value=2.5 Score=42.99 Aligned_cols=38 Identities=21% Similarity=0.343 Sum_probs=27.2
Q ss_pred eeCCCCCCC-CcccchhhhhHHHHHHHHHHHCCCeEEEeeccCcc
Q 010356 91 FSSPNIAKE-MHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDW 134 (512)
Q Consensus 91 ~~spNp~~~-lHvGH~R~~iiGD~lar~l~~~G~~V~~~~~i~D~ 134 (512)
||+--|||+ |||||+- .+ -.+.++ ...||+++. .|+|+
T Consensus 68 y~G~dPTg~sLHlGhlv-~l--~~l~~l-Q~~G~~~~~--lIgD~ 106 (392)
T 1y42_X 68 YVGIDPTAPSLHVGHLL-PL--MPLFWM-YLEGYKAFT--LIGGS 106 (392)
T ss_dssp EEEECCCSSSCBGGGHH-HH--HHHHHH-HHHTCEEEE--EECTT
T ss_pred EEeecCCCCCccHHHHH-HH--HHHHHH-HHcCCcEEE--EEcCc
Confidence 999999999 9999965 33 234444 456998755 56664
No 81
>2ts1_A Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 3ts1_A* 1tyd_E* 1tya_E* 1tyc_A 1tyb_E* 4ts1_A* 1jh3_A
Probab=68.47 E-value=3.5 Score=42.33 Aligned_cols=38 Identities=24% Similarity=0.422 Sum_probs=27.0
Q ss_pred eeCCCCCCC-CcccchhhhhHHHHHHHHHHHCCCeEEEeeccCcc
Q 010356 91 FSSPNIAKE-MHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDW 134 (512)
Q Consensus 91 ~~spNp~~~-lHvGH~R~~iiGD~lar~l~~~G~~V~~~~~i~D~ 134 (512)
||+--|||+ |||||+- .+ -.+ +.|+..||+++. .|+|+
T Consensus 34 y~G~dPTg~sLHlGh~v-~l--~~l-~~lQ~~G~~~i~--lIgd~ 72 (419)
T 2ts1_A 34 YCGFDPTADSLHIGHLA-TI--LTM-RRFQQAGHRPIA--LVGGA 72 (419)
T ss_dssp EEEECCSSSSCBGGGHH-HH--HHH-HHHHHTTCEEEE--EECTT
T ss_pred EEeeCCCCCCccHHHHH-HH--HHH-HHHHHCCCcEEE--EEcCc
Confidence 999999999 9999955 22 233 445567998765 45554
No 82
>3tzl_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta structure; HET: ADP TRP; 2.15A {Campylobacter jejuni subsp} SCOP: c.26.1.0 PDB: 3m5w_A*
Probab=68.12 E-value=1.4 Score=43.72 Aligned_cols=38 Identities=8% Similarity=0.293 Sum_probs=27.8
Q ss_pred eeCCCCCCCCcccchhhhhHHHHHHHHHHHCCCeEEEeeccCcc
Q 010356 91 FSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDW 134 (512)
Q Consensus 91 ~~spNp~~~lHvGH~R~~iiGD~lar~l~~~G~~V~~~~~i~D~ 134 (512)
||+--|||.+|+||.-.++.- +.++ +. ||+++ ..|+||
T Consensus 7 ysG~~PTg~lHlG~~lg~l~~--~~~l-Q~-g~~~~--~~iaD~ 44 (322)
T 3tzl_A 7 LTGLQPSGDLHIGNYFGAIKQ--MVDA-QE-KSQMF--MFIANY 44 (322)
T ss_dssp EEEECCSSCCBHHHHHHTHHH--HHHT-TT-TSCCE--EEECHH
T ss_pred EEccCCCccccHHHHHHHHHH--HHHH-hc-CCCEE--EEEecC
Confidence 889999999999998765543 4443 33 98884 457775
No 83
>2jan_A Tyrosyl-tRNA synthetase; protein biosynthesis, aminoacyl-tRNA synthetase, tyrrs, ligase, tyrosine, RNA-binding, ATP-binding; 2.9A {Mycobacterium tuberculosis}
Probab=67.14 E-value=3.9 Score=42.17 Aligned_cols=38 Identities=16% Similarity=0.310 Sum_probs=26.9
Q ss_pred eeCCCCCCC-CcccchhhhhHHHHHHHHHHHCCCeEEEeeccCcc
Q 010356 91 FSSPNIAKE-MHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDW 134 (512)
Q Consensus 91 ~~spNp~~~-lHvGH~R~~iiGD~lar~l~~~G~~V~~~~~i~D~ 134 (512)
||+--|||+ |||||+- ++. .+. .|+..||+++. .|+|+
T Consensus 36 y~G~dPTg~sLHLGhlv-~l~--~l~-~lQ~~G~~~i~--lIgD~ 74 (432)
T 2jan_A 36 YAGFDPTAPSLHAGHLV-PLL--TLR-RFQRAGHRPIV--LAGGA 74 (432)
T ss_dssp EEEECCSSSSCBGGGHH-HHH--HHH-HHHHTTCEEEE--EECHH
T ss_pred EEeeCCCCCCcCHHHHH-HHH--HHH-HHHHCCCcEEE--EEcCc
Confidence 999999997 9999944 332 344 44557998765 56664
No 84
>2j5b_A Tyrosyl-tRNA synthetase; ligase, protein biosynthesis, ATP-binding; HET: TYE; 2.20A {Acanthamoeba polyphaga mimivirus}
Probab=66.67 E-value=4.3 Score=40.59 Aligned_cols=39 Identities=10% Similarity=0.246 Sum_probs=26.4
Q ss_pred eeCCCCCCCCcccchhhhhHHHHHHHHHHHCCCeEEEeeccCcc
Q 010356 91 FSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDW 134 (512)
Q Consensus 91 ~~spNp~~~lHvGH~R~~iiGD~lar~l~~~G~~V~~~~~i~D~ 134 (512)
||+--|||.|||||.-..+ -.+.+ |...||+|+ ..|+||
T Consensus 44 y~G~~PTg~lHlGhyl~~l--~~~~~-lQ~~G~~~~--~~i~D~ 82 (348)
T 2j5b_A 44 YNGFEPSGRIHIAQALITV--MNTNN-MIECGGQMI--IYIADW 82 (348)
T ss_dssp EEEECCCSSCBHHHHHHHH--HHHHH-HHHTTEEEE--EEECHH
T ss_pred EeccCCCCCCchhHHHHHH--HHHHH-HHHcCCcEE--EEeccc
Confidence 9999999999999922111 23334 445698765 467775
No 85
>2yxn_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: AZY; 1.80A {Escherichia coli str} PDB: 1wq3_A* 1wq4_A* 1x8x_A* 1vbn_A* 1vbm_A*
Probab=65.62 E-value=3.5 Score=40.77 Aligned_cols=38 Identities=18% Similarity=0.305 Sum_probs=27.3
Q ss_pred eeCCCCCCC-CcccchhhhhHHHHHHHHHHHCCCeEEEeeccCcc
Q 010356 91 FSSPNIAKE-MHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDW 134 (512)
Q Consensus 91 ~~spNp~~~-lHvGH~R~~iiGD~lar~l~~~G~~V~~~~~i~D~ 134 (512)
||+--|||+ |||||+- .+ -.+ +.|+..||++. ..|+||
T Consensus 37 y~G~~PTg~slHlGh~l-~l--~~~-~~lQ~~g~~~~--~~i~D~ 75 (322)
T 2yxn_A 37 VCGFDPTADSLHLGHLV-PL--LCL-KRFQQAGHKPV--ALVGGA 75 (322)
T ss_dssp EEEECCSSSSCBHHHHH-HH--HHH-HHHHHTTCEEE--EEECTT
T ss_pred EEeecCCCCcccHHHHH-HH--HHH-HHHHHcCCcEE--EEEccc
Confidence 999999999 9999965 22 223 34556799874 467775
No 86
>2yy5_A Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synthetase, structural genomics, NPPSFA; HET: WSA; 2.55A {Mycoplasma pneumoniae}
Probab=65.43 E-value=1.9 Score=43.27 Aligned_cols=38 Identities=18% Similarity=0.230 Sum_probs=27.7
Q ss_pred eeCCCCCCCCcccchhhhhHHHHHHHHHHHCCCeEEEeeccCcc
Q 010356 91 FSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDW 134 (512)
Q Consensus 91 ~~spNp~~~lHvGH~R~~iiGD~lar~l~~~G~~V~~~~~i~D~ 134 (512)
||+--|||.+||||...++. -. +-|+. ||++ ...|.||
T Consensus 8 ~sG~~PTG~lHLGn~vg~l~--~~-~~lQ~-~~~~--~~~IaD~ 45 (348)
T 2yy5_A 8 LTGIQASGKQHLGNYLGVMQ--SL-IELQE-QCQL--FVFVADL 45 (348)
T ss_dssp EEEECCCTTCBHHHHHHTGG--GH-HHHHH-HSEE--EEEECHH
T ss_pred EEeeCCCCcccHHHHHHHHH--HH-HHHHh-CCcE--EEEEcCh
Confidence 89999999999999887661 11 13455 8886 4677774
No 87
>1jil_A Tyrrs, tyrosyl-tRNA synthetase; truncation, based inhibitor design, ligase; HET: 485; 2.20A {Staphylococcus aureus} SCOP: c.26.1.1 PDB: 1jij_A* 1jii_A* 1jik_A*
Probab=64.15 E-value=3.8 Score=42.11 Aligned_cols=41 Identities=17% Similarity=0.355 Sum_probs=28.1
Q ss_pred EEEEeeCCCCCCC-CcccchhhhhHHHHHHHHHHHCCCeEEEeeccCcc
Q 010356 87 AVVDFSSPNIAKE-MHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDW 134 (512)
Q Consensus 87 v~Ve~~spNp~~~-lHvGH~R~~iiGD~lar~l~~~G~~V~~~~~i~D~ 134 (512)
+.| ||+--|||+ |||||+- .+ -.+ +-|+..||+++. .|+|+
T Consensus 33 ~~i-y~G~dPTg~sLHlGh~v-~l--~~~-~~lQ~~G~~~~~--lIgd~ 74 (420)
T 1jil_A 33 VTL-YCGADPTADSLHIGHLL-PF--LTL-RRFQEHGHRPIV--LIGGG 74 (420)
T ss_dssp CEE-EEEECCSSSSCBHHHHH-HH--HHH-HHHHHTTCEEEE--EECTT
T ss_pred CEE-EEeeCCCCCCccHHHHH-HH--HHH-HHHHHCCCcEEE--EEcCc
Confidence 344 999999999 9999955 22 233 345567998866 44553
No 88
>2pid_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, protein-substrate complex, ATP-BI ligase, mitochondrion, nucleotide-binding, protein biosynth; HET: YSA; 2.20A {Homo sapiens} PDB: 3zxi_A*
Probab=64.10 E-value=4.2 Score=40.79 Aligned_cols=41 Identities=24% Similarity=0.439 Sum_probs=28.4
Q ss_pred EEEEeeCCCCCCC-CcccchhhhhHHHHHHHHHHHCCCeEEEeeccCcc
Q 010356 87 AVVDFSSPNIAKE-MHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDW 134 (512)
Q Consensus 87 v~Ve~~spNp~~~-lHvGH~R~~iiGD~lar~l~~~G~~V~~~~~i~D~ 134 (512)
..| ||+--|||+ |||||+- ++. .+. .|+..||+|+. .|+|+
T Consensus 47 ~~v-y~G~~PTg~sLHLGhl~-~l~--~~~-~lQ~~G~~~~~--lIaD~ 88 (356)
T 2pid_A 47 QTI-YCGFDPTADSLHVGHLL-ALL--GLF-HLQRAGHNVIA--LVGGA 88 (356)
T ss_dssp CEE-EEEECCSSSSCBHHHHH-HHH--HHH-HHHHTTCEEEE--EECTT
T ss_pred CEE-EEeecCCCCcccHHHHH-HHH--HHH-HHHHCCCcEEE--EEccc
Confidence 445 999999998 9999943 333 244 44557998755 56774
No 89
>3i05_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, LIG nucleotide-binding, protein biosynthesis; 2.80A {Trypanosoma brucei} SCOP: c.26.1.0
Probab=63.61 E-value=5.9 Score=40.31 Aligned_cols=43 Identities=21% Similarity=0.256 Sum_probs=29.2
Q ss_pred ceEEEEeeCCCCCC-CCcccchhhhhHHHHHHHHHHHC-CCeEEEeeccCcc
Q 010356 85 KKAVVDFSSPNIAK-EMHVGHLRSTIIGDSLARMLEFS-NVEVLRRNHVGDW 134 (512)
Q Consensus 85 ~~v~Ve~~spNp~~-~lHvGH~R~~iiGD~lar~l~~~-G~~V~~~~~i~D~ 134 (512)
+++.| |++--||| .+||||+=.+ ..+ |.|+.. |..|... |+|+
T Consensus 77 ~~~~v-y~G~~PTg~~lHLGh~v~~---~~~-~~lQ~~~~~~v~i~--I~D~ 121 (395)
T 3i05_A 77 QPFYL-YTGRGPSSESMHMGHLIPF---MFT-KWLQDSFRVPLVIQ--MTDD 121 (395)
T ss_dssp CCEEE-EEEECCCSSCCBGGGSHHH---HHH-HHHHHHHTCCEEEE--ECHH
T ss_pred CCeEE-EEeecCCCccchHHHHHHH---HHH-HHHHHhcCCcEEEE--Ecch
Confidence 34556 99999999 6999996332 344 445554 7777665 7775
No 90
>1h3f_A Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase; HET: TYE; 2.00A {Thermus thermophilus} SCOP: c.26.1.1 d.66.1.4 PDB: 1h3e_A*
Probab=61.08 E-value=5.4 Score=41.10 Aligned_cols=43 Identities=16% Similarity=0.251 Sum_probs=28.6
Q ss_pred EEEEeeCCCCCCC-CcccchhhhhHHHHHHHHHHHCCCeEEEeeccCccch
Q 010356 87 AVVDFSSPNIAKE-MHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGT 136 (512)
Q Consensus 87 v~Ve~~spNp~~~-lHvGH~R~~iiGD~lar~l~~~G~~V~~~~~i~D~G~ 136 (512)
+.| ||+--|||+ |||||+- . --.+.+ |...||+|+ ..|+||=.
T Consensus 38 ~~v-y~G~dPTg~sLHlGh~v-~--l~~l~~-lQ~~G~~~i--~lIgD~ta 81 (432)
T 1h3f_A 38 LTV-KLGADPTRPDLHLGHAV-V--LRKMRQ-FQELGHKVV--LIIGDFTG 81 (432)
T ss_dssp CEE-EEEECTTCCSCBHHHHH-H--HHHHHH-HHHTTCEEE--EEECCCC-
T ss_pred cEE-EEcccCCCCCCchhhHH-H--HHHHHH-HHHCCCCEE--EEEccceE
Confidence 344 999999997 9999965 2 233444 445799865 46777643
No 91
>1r6t_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytical domain, recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.10A {Homo sapiens} SCOP: a.16.1.3 c.26.1.1 PDB: 2azx_A* 2quh_A* 2qui_A* 2quj_A* 2quk_A
Probab=60.32 E-value=6.5 Score=41.02 Aligned_cols=44 Identities=27% Similarity=0.360 Sum_probs=31.7
Q ss_pred CceEEEEeeCCCCC-CCCcccchhhhhHHHHHHHHHHH-CCCeEEEeeccCcc
Q 010356 84 VKKAVVDFSSPNIA-KEMHVGHLRSTIIGDSLARMLEF-SNVEVLRRNHVGDW 134 (512)
Q Consensus 84 ~~~v~Ve~~spNp~-~~lHvGH~R~~iiGD~lar~l~~-~G~~V~~~~~i~D~ 134 (512)
++++.| ||+--|| |.|||||+-.++ +.|.|+. .|+.|+. .|+|+
T Consensus 153 ~~~~~v-y~G~dPTag~LHLGh~v~~~----~~~~lQ~~~g~~~ii--lI~D~ 198 (477)
T 1r6t_A 153 KKPFYL-YTGRGPSSEAMHVGHLIPFI----FTKWLQDVFNVPLVI--QMTDD 198 (477)
T ss_dssp TCCEEE-EEEECCCTTCCBGGGHHHHH----HHHHHHHHHTCCEEE--EECHH
T ss_pred CCCcEE-EEcccCCCCCccHHHHHHHH----HHHHHHHHhCCcEEE--EEecc
Confidence 456667 9999999 899999976544 2344665 7988665 46664
No 92
>3hv0_A Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, ligase, nucleotide-binding; HET: TRP; 2.42A {Cryptosporidium parvum iowa II} SCOP: c.26.1.0
Probab=59.95 E-value=5.8 Score=40.35 Aligned_cols=44 Identities=18% Similarity=0.248 Sum_probs=29.6
Q ss_pred eEEEEeeCCCCC-CCCcccchhhhhHHHHHHHHHHHC-CCeEEEeeccCccch
Q 010356 86 KAVVDFSSPNIA-KEMHVGHLRSTIIGDSLARMLEFS-NVEVLRRNHVGDWGT 136 (512)
Q Consensus 86 ~v~Ve~~spNp~-~~lHvGH~R~~iiGD~lar~l~~~-G~~V~~~~~i~D~G~ 136 (512)
.+.| |++--|| |.+|+||+-.++ .+.+ |+.+ |..|.. -|+|++.
T Consensus 74 ~~~v-y~G~~PTa~~lHlGh~v~~~---~~~~-lQ~~~~~~v~i--~I~D~~~ 119 (393)
T 3hv0_A 74 LFYL-YTGRGPSSESLHVGHLVPFL---FTKY-LQDTFKVPLVI--QLTDDEK 119 (393)
T ss_dssp CCEE-EEEECCSSSSCBSTTHHHHH---HHHH-HHHHHCCCEEE--EECHHHH
T ss_pred CeEE-EeCCCCCCCCccHHHHHHHH---HHHH-HHHhcCCCeEe--eccChHH
Confidence 3455 8999999 689999954333 3444 5555 666555 6889753
No 93
>3tze_A Tryptophanyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, amino acylation; HET: TRP; 2.60A {Encephalitozoon cuniculi}
Probab=55.49 E-value=9.9 Score=38.77 Aligned_cols=44 Identities=14% Similarity=0.289 Sum_probs=30.1
Q ss_pred CceEEEEeeCCCCCC-CCcccchhhhhHHHHHHHHHHHC-CCeEEEeeccCcc
Q 010356 84 VKKAVVDFSSPNIAK-EMHVGHLRSTIIGDSLARMLEFS-NVEVLRRNHVGDW 134 (512)
Q Consensus 84 ~~~v~Ve~~spNp~~-~lHvGH~R~~iiGD~lar~l~~~-G~~V~~~~~i~D~ 134 (512)
++++.| |++--|+| .+|+||+-.+ .+.|.|+.. |..|.. -|+|+
T Consensus 99 ~~p~~v-y~G~~PTg~~lHLGh~v~~----~~~~~lQ~~~g~~~~i--~IaD~ 144 (406)
T 3tze_A 99 NRPFYL-YTGRGPSSKTMHIGHTIPF----LLCKYMQDAFKIRLVI--QITDD 144 (406)
T ss_dssp TCCEEE-EEEECCCSSCCBGGGHHHH----HHHHHHHHHHTCCEEE--EECHH
T ss_pred CCCeEE-EEeeCCCCCcccHHHHHHH----HHHHHHHHhcCCcEEE--EeeCh
Confidence 445666 89999998 7999995433 234446655 877665 46775
No 94
>1r6u_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytic domain, AN recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.00A {Homo sapiens} SCOP: c.26.1.1 PDB: 1ulh_A 2dr2_A* 2ake_A* 1o5t_A
Probab=54.87 E-value=7.5 Score=40.08 Aligned_cols=44 Identities=27% Similarity=0.360 Sum_probs=31.4
Q ss_pred CceEEEEeeCCCCC-CCCcccchhhhhHHHHHHHHHHH-CCCeEEEeeccCcc
Q 010356 84 VKKAVVDFSSPNIA-KEMHVGHLRSTIIGDSLARMLEF-SNVEVLRRNHVGDW 134 (512)
Q Consensus 84 ~~~v~Ve~~spNp~-~~lHvGH~R~~iiGD~lar~l~~-~G~~V~~~~~i~D~ 134 (512)
++++.| ||+--|| |.|||||+-..+ ..|.|+. .|+.|+. .|+|+
T Consensus 106 ~~~~~v-y~G~dPTag~LHLGh~v~~~----~~~~lQ~~~G~~~ii--lIgD~ 151 (437)
T 1r6u_A 106 KKPFYL-YTGRGPSSEAMHVGHLIPFI----FTKWLQDVFNVPLVI--QMTDD 151 (437)
T ss_dssp TCCEEE-EEEECCCSSCCBHHHHHHHH----HHHHHHHHHTCCEEE--EECHH
T ss_pred CCCcEE-EEcccCCCCCccHHHHHHHH----HHHHHHHHhCCcEEE--EEecc
Confidence 456666 9999999 899999976443 2344555 7988755 56674
No 95
>3foc_A Tryptophanyl-tRNA synthetase; structural genomics, giardiasi aminoacyl-tRNA synthetase, ligase; 2.09A {Giardia lamblia atcc 50803}
Probab=54.85 E-value=8.5 Score=39.77 Aligned_cols=44 Identities=16% Similarity=0.178 Sum_probs=29.6
Q ss_pred ceEEEEeeCCCCC-CCCcccchhhhhHHHHHHHHHHHC-CCeEEEeeccCccc
Q 010356 85 KKAVVDFSSPNIA-KEMHVGHLRSTIIGDSLARMLEFS-NVEVLRRNHVGDWG 135 (512)
Q Consensus 85 ~~v~Ve~~spNp~-~~lHvGH~R~~iiGD~lar~l~~~-G~~V~~~~~i~D~G 135 (512)
+++.| |++--|| |.|||||+-.+ -.+.+ |+.. |..|.. -|+|+.
T Consensus 90 ~p~~v-ytG~dPTagsLHLGH~v~~---~~l~~-lQ~~~g~~v~I--~IgD~~ 135 (451)
T 3foc_A 90 HPIYI-YTGRGPSSGALHLGHLLPF---IFTKY-LQDAFKCYVVI--QITDDE 135 (451)
T ss_dssp CCEEE-EEEECCCSSCCBHHHHHHH---HHHHH-HHHHHTCEEEE--EECHHH
T ss_pred CCeEE-EecCCCCCCCccHHHHHHH---HHHHH-HHHccCceEEE--EeeCcH
Confidence 34556 9999999 88999995433 22333 5555 666665 488863
No 96
>3sz3_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, rossmann fold; HET: TRP; 1.50A {Vibrio cholerae o1 biovar el tor}
Probab=54.03 E-value=4 Score=40.74 Aligned_cols=38 Identities=16% Similarity=0.223 Sum_probs=26.5
Q ss_pred eeCCCCCCCCcccchhhhhHHHHHHHHHHHCCCeEEEeeccCcc
Q 010356 91 FSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDW 134 (512)
Q Consensus 91 ~~spNp~~~lHvGH~R~~iiGD~lar~l~~~G~~V~~~~~i~D~ 134 (512)
|++--|+|++|+||.-.++ --+.++ +. ||+|+ ..|.||
T Consensus 10 ~sG~~PTG~lHLGhy~g~l--~~~~~l-Q~-~~~~~--~~iaD~ 47 (341)
T 3sz3_A 10 LSGVQPSGELSIGNYLGAL--RQWQQM-QD-DYDCQ--YCVVDL 47 (341)
T ss_dssp EEEECSSSCCBHHHHHHTG--GGHHHH-HH-HSEEE--EEECHH
T ss_pred EeCcCCCCcccHHHHHHHH--HHHHHH-Hh-cCeEE--EEEecc
Confidence 8899999999999976655 222333 33 57754 567885
No 97
>2ip1_A Tryptophanyl-tRNA synthetase; rossmann fold, structural genomics, PSI-2, protein structure initiative; HET: PG4; 1.80A {Saccharomyces cerevisiae} PDB: 3kt0_A* 3kt3_A* 3kt6_A* 3kt8_A*
Probab=52.97 E-value=8.9 Score=39.46 Aligned_cols=42 Identities=17% Similarity=0.276 Sum_probs=29.2
Q ss_pred eEEEEeeCCCCC-CCCcccchhhhhHHHHHHHHHHH-CCCeEEEeeccCcc
Q 010356 86 KAVVDFSSPNIA-KEMHVGHLRSTIIGDSLARMLEF-SNVEVLRRNHVGDW 134 (512)
Q Consensus 86 ~v~Ve~~spNp~-~~lHvGH~R~~iiGD~lar~l~~-~G~~V~~~~~i~D~ 134 (512)
++.| ||+--|| |.|||||+-..+ .+ |.|+. .|+.|+. .|+||
T Consensus 102 ~~~v-y~G~dPTag~LHLGh~v~~~---~l-~~lQ~~~g~~~i~--lI~D~ 145 (432)
T 2ip1_A 102 PFFL-YTGRGPSSDSMHLGHMIPFV---FT-KWLQEVFDVPLVI--ELTDD 145 (432)
T ss_dssp CCEE-EEEECCCSSCCBGGGHHHHH---HH-HHHHHHHTCCEEE--EECHH
T ss_pred CeEE-EEeecCCCCCccHHHHHHHH---HH-HHHHHHcCCeEEE--EEecc
Confidence 4455 9999999 899999976443 23 34555 7988655 46674
No 98
>3prh_A Tryptophanyl-tRNA synthetase; TRPRS, protein biosynthesis, translation, class I tRNA synth rossman fold, high motif, KMSKS motif; 2.80A {Bacillus subtilis}
Probab=51.74 E-value=5.2 Score=40.60 Aligned_cols=38 Identities=13% Similarity=0.123 Sum_probs=26.5
Q ss_pred eeCCCCCCCCcccchhhhhHHHHHHHHHHHCCCeEEEeeccCcc
Q 010356 91 FSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDW 134 (512)
Q Consensus 91 ~~spNp~~~lHvGH~R~~iiGD~lar~l~~~G~~V~~~~~i~D~ 134 (512)
|++--|||++|+||.-.++- . .+-|+. ||+|. +.|.||
T Consensus 39 ~sG~~PTG~lHLGhyvGal~-~--~~~LQ~-~~~~~--~~IaD~ 76 (388)
T 3prh_A 39 FSGIQPSGSVTLGNYIGAMK-Q--FVELQH-DYNSY--FCIVDQ 76 (388)
T ss_dssp EEEECCCSCCBHHHHHHTHH-H--HHHTTT-TSEEE--EEECHH
T ss_pred EEeeCCCCcchHHHHHHHHH-H--HHHHHc-cCcEE--EEEecc
Confidence 89999999999999755442 1 123333 89874 467785
No 99
>2cyc_A Tyrosyl-tRNA synthetase; tyrosine, tyrrs, aminoacylation, structural genomics; HET: TYR; 2.20A {Pyrococcus horikoshii}
Probab=43.72 E-value=12 Score=37.84 Aligned_cols=39 Identities=15% Similarity=0.274 Sum_probs=26.3
Q ss_pred eeCCCCCCCCcccchhhhhHHHHHHHHHHHCCCeEEEeeccCcc
Q 010356 91 FSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDW 134 (512)
Q Consensus 91 ~~spNp~~~lHvGH~R~~iiGD~lar~l~~~G~~V~~~~~i~D~ 134 (512)
|++--|||.+||||.-.++ -.+. .|+..||+|+. .|+||
T Consensus 37 y~G~~PTg~lHlG~yl~~l--~~~~-~lQ~~G~~~~~--~iaD~ 75 (375)
T 2cyc_A 37 YIGFEISGYIHLGTGLMAG--AKIA-DFQKAGIKTRV--FLADW 75 (375)
T ss_dssp EEEECCCSCCBHHHHHHHH--HHHH-HHHHTTCBCEE--EECHH
T ss_pred EeCCCCCCCcCchHHHHHH--HHHH-HHHHCCCcEEE--EecCc
Confidence 8999999999999932222 2233 34457988754 66774
No 100
>2wh6_B BCL-2-like protein 11; mitochondrion, early protein, transmembrane, viral protein,; 1.50A {Homo sapiens} PDB: 2v6q_B 2nl9_B 3fdl_B 3io8_B 2vm6_B 3io9_B 3d7v_B 3kj1_B 3kz0_C 3kj2_B
Probab=34.40 E-value=27 Score=20.34 Aligned_cols=18 Identities=17% Similarity=0.493 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHhcchh
Q 010356 490 VVCEYLYNLSEYFTRFYS 507 (512)
Q Consensus 490 ~l~~yl~~La~~fn~fY~ 507 (512)
.+++-|..+...||.+|-
T Consensus 7 ~iAqELRRIGDeFN~~y~ 24 (26)
T 2wh6_B 7 WIAQELRRIGDEFNAYYA 24 (26)
T ss_dssp HHHHHHHHHHHHHTTC--
T ss_pred HHHHHHHHHhHHHhhhcc
Confidence 367889999999999984
No 101
>3g5j_A Putative ATP/GTP binding protein; N-terminal domain of ATP/GTP binding protein, PSI, MCSG, STR genomics, protein structure initiative; HET: PGE; 1.76A {Clostridium difficile}
Probab=31.09 E-value=71 Score=25.86 Aligned_cols=30 Identities=27% Similarity=0.482 Sum_probs=19.1
Q ss_pred ceEEEEeeCCCCCCCCcccchhhhhHHHHHHHHHHHCCCeEEE
Q 010356 85 KKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLR 127 (512)
Q Consensus 85 ~~v~Ve~~spNp~~~lHvGH~R~~iiGD~lar~l~~~G~~V~~ 127 (512)
++|+| ||.- |..|+. ..+.+|+.+||+|..
T Consensus 90 ~~ivv-yC~~--------~G~rs~----~a~~~L~~~G~~v~~ 119 (134)
T 3g5j_A 90 DNIVI-YCAR--------GGMRSG----SIVNLLSSLGVNVYQ 119 (134)
T ss_dssp SEEEE-ECSS--------SSHHHH----HHHHHHHHTTCCCEE
T ss_pred CeEEE-EECC--------CChHHH----HHHHHHHHcCCceEE
Confidence 67877 5520 124554 567788899997654
No 102
>3r6u_A Choline-binding protein; substrate binding protein, ABC-transporter, extracellular, transport protein; 1.61A {Bacillus subtilis} SCOP: c.94.1.0 PDB: 3ppq_A 3ppo_A* 3ppp_A 3ppn_A 3ppr_A*
Probab=29.26 E-value=39 Score=32.43 Aligned_cols=39 Identities=18% Similarity=0.394 Sum_probs=31.7
Q ss_pred CCCcccch---hhhhHHHHHHHHHHHC-CCeEEEeeccCccch
Q 010356 98 KEMHVGHL---RSTIIGDSLARMLEFS-NVEVLRRNHVGDWGT 136 (512)
Q Consensus 98 ~~lHvGH~---R~~iiGD~lar~l~~~-G~~V~~~~~i~D~G~ 136 (512)
++..||.. =+.+++..++.+|+.. ||+|.....+++...
T Consensus 12 ~~I~ig~~~~te~~il~~i~~~~Le~~~G~~V~~~~~lg~~~~ 54 (284)
T 3r6u_A 12 QTIKIGAQSMSESEIIASMLGQLIEHHTDLKTTTIKNLGSNAV 54 (284)
T ss_dssp CCEEEEEESSHHHHHHHHHHHHHHHHHSSCCEEEEEEECSHHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHHHhcCCCCeEEEecCCchHH
Confidence 55666664 4789999999999998 999999988877443
No 103
>1vee_A Proline-rich protein family; hypothetical protein, structural genomics, rhodanese domain, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} PDB: 2dcq_A
Probab=27.42 E-value=91 Score=25.69 Aligned_cols=58 Identities=9% Similarity=0.067 Sum_probs=29.8
Q ss_pred CCeEEEEeCHHHHHHHHHHHHHcCCCCCCCcCCCceEEEEeeCCCCCCCCcccchhhhhHHHHHHHHHHHCCCe-EEE
Q 010356 51 PGFVNVVLSKNWMAKNIQKMLVDGIETWAPKLRVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVE-VLR 127 (512)
Q Consensus 51 ~GfiN~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~Ve~~spNp~~~lHvGH~R~~iiGD~lar~l~~~G~~-V~~ 127 (512)
||-+|+-+..-.....+.++.... . ..++++|+| ||. -| .|+... +++|+.+||+ |..
T Consensus 46 ~ga~~ip~~~~~~~~~~~~l~~~~---~--~~~~~~ivv-~C~--------sG-~RS~~a----a~~L~~~G~~~v~~ 104 (134)
T 1vee_A 46 KKAVSTVYNGEDKPGFLKKLSLKF---K--DPENTTLYI-LDK--------FD-GNSELV----AELVALNGFKSAYA 104 (134)
T ss_dssp CCCEECCCCGGGHHHHHHHHHTTC---S--CGGGCEEEE-ECS--------SS-TTHHHH----HHHHHHHTCSEEEE
T ss_pred CceEEeecccccChhHHHHHHHHh---C--CCCCCEEEE-EeC--------CC-CcHHHH----HHHHHHcCCcceEE
Confidence 678899876421111222221111 0 123567777 554 13 377544 6667778995 643
No 104
>3n9i_A Tryptophanyl-tRNA synthetase; tryptophan-tRNA ligase, csgid, structural genomics, niaid, center for structural genomics infectious diseases; 1.95A {Yersinia pestis} SCOP: c.26.1.1
Probab=27.27 E-value=16 Score=36.40 Aligned_cols=36 Identities=14% Similarity=0.323 Sum_probs=25.4
Q ss_pred eeCCCCCCCCcccchhhhhHHHHHHHH--HHHCCCeEEEeeccCcc
Q 010356 91 FSSPNIAKEMHVGHLRSTIIGDSLARM--LEFSNVEVLRRNHVGDW 134 (512)
Q Consensus 91 ~~spNp~~~lHvGH~R~~iiGD~lar~--l~~~G~~V~~~~~i~D~ 134 (512)
|++--|+|++|+||.-.++ .++ |+. +|+|+ ..|.||
T Consensus 19 ~sG~~PTG~lHLGh~vg~l-----~~~~~lQ~-~~~~~--~~iaD~ 56 (346)
T 3n9i_A 19 FSGAQPSGELTIGNYMGAL-----RQWVQMQD-DYDCI--YCIVDL 56 (346)
T ss_dssp EEEECSCSCCBHHHHHHTH-----HHHHTTTT-TSEEE--EEECHH
T ss_pred EECcCCCCcccHHHHHHHH-----HHHHHHHh-hCcEE--EEEecc
Confidence 8999999999999975543 333 333 67754 567785
No 105
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=26.48 E-value=98 Score=26.94 Aligned_cols=35 Identities=9% Similarity=0.174 Sum_probs=26.8
Q ss_pred CCCCcccchhhhhHHHHHHHHHHHCCCeEEEeecc
Q 010356 97 AKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHV 131 (512)
Q Consensus 97 ~~~lHvGH~R~~iiGD~lar~l~~~G~~V~~~~~i 131 (512)
+.-++||++-..+--+-|..++...|..|..+..+
T Consensus 120 ~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~ 154 (198)
T 1qm9_A 120 SATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFF 154 (198)
T ss_dssp CCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEES
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEE
Confidence 44578999887788888999999999766665543
No 106
>2fsx_A RV0390, COG0607: rhodanese-related sulfurtransferase; RV0390 BR SAD DATA with FBAR, structural genomics, PSI; 1.80A {Mycobacterium tuberculosis}
Probab=25.96 E-value=60 Score=27.36 Aligned_cols=31 Identities=13% Similarity=0.213 Sum_probs=18.5
Q ss_pred CCceEEEEeeCCCCCCCCcccchhhhhHHHHHHHHHHHCCCe-EEE
Q 010356 83 RVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVE-VLR 127 (512)
Q Consensus 83 ~~~~v~Ve~~spNp~~~lHvGH~R~~iiGD~lar~l~~~G~~-V~~ 127 (512)
++++|+| ||.- | .|+. ..+..|+.+||+ |..
T Consensus 79 ~~~~ivv-yC~~--------G-~rS~----~aa~~L~~~G~~~v~~ 110 (148)
T 2fsx_A 79 HERPVIF-LCRS--------G-NRSI----GAAEVATEAGITPAYN 110 (148)
T ss_dssp --CCEEE-ECSS--------S-STHH----HHHHHHHHTTCCSEEE
T ss_pred CCCEEEE-EcCC--------C-hhHH----HHHHHHHHcCCcceEE
Confidence 3566878 4541 3 3654 457778889994 654
No 107
>1pq1_B BCL2-like protein 11; BCL-XL/BIM, apoptosis; 1.65A {Mus musculus}
Probab=22.87 E-value=50 Score=20.38 Aligned_cols=18 Identities=17% Similarity=0.396 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHhcchh
Q 010356 490 VVCEYLYNLSEYFTRFYS 507 (512)
Q Consensus 490 ~l~~yl~~La~~fn~fY~ 507 (512)
-+++-|..+...||.||-
T Consensus 7 wIAQELRRIGDeFNa~yp 24 (33)
T 1pq1_B 7 RIAQELRRIGDEFNETYT 24 (33)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHhhcccc
Confidence 367889999999999884
No 108
>3kj0_B BCL-2-like protein 11; BH3, apoptosis, protein-peptide complex, alternative splicing, cytoplasm, developmental protein, differentiation; 1.70A {Homo sapiens} PDB: 2pqk_B
Probab=20.89 E-value=61 Score=18.97 Aligned_cols=17 Identities=18% Similarity=0.491 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHhcchh
Q 010356 491 VCEYLYNLSEYFTRFYS 507 (512)
Q Consensus 491 l~~yl~~La~~fn~fY~ 507 (512)
+++-|..+...||.+|.
T Consensus 10 iAqELRRIGDeFN~~y~ 26 (27)
T 3kj0_B 10 YAQELRRIGDEFNAYYA 26 (27)
T ss_dssp HHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhhcc
Confidence 67788899999999883
No 109
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=20.71 E-value=1.5e+02 Score=26.77 Aligned_cols=36 Identities=8% Similarity=0.160 Sum_probs=28.1
Q ss_pred CCCCcccchhhhhHHHHHHHHHHHCCCeEEEeeccC
Q 010356 97 AKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVG 132 (512)
Q Consensus 97 ~~~lHvGH~R~~iiGD~lar~l~~~G~~V~~~~~i~ 132 (512)
+..++||++-..+--+.|..++...|..|..+..+.
T Consensus 151 ~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~ 186 (229)
T 2adc_A 151 SATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQ 186 (229)
T ss_dssp CSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECS
T ss_pred CCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEE
Confidence 345889998877778889999999998777766543
Done!