RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 010356
(512 letters)
>1f7u_A Arginyl-tRNA synthetase; RNA-protein complex, aminoacylation; HET:
PSU 1MG 2MG H2U M2G 5MC 5MU 1MA ARG; 2.20A
{Saccharomyces cerevisiae} SCOP: a.27.1.1 c.26.1.1
d.67.2.1 PDB: 1bs2_A* 1f7v_A*
Length = 607
Score = 629 bits (1625), Expect = 0.0
Identities = 145/503 (28%), Positives = 236/503 (46%), Gaps = 28/503 (5%)
Query: 24 KGPQPVGQAIMKNLPPSEMIESCSVAGPGFVNVVLSKNWMAKNIQKMLVDGIET--WAPK 81
P+ + + P + +E GP F+ + ++AK + ++ E
Sbjct: 81 ANPKDLAVQWAEKFPCGDFLEKVEANGP-FIQFFFNPQFLAKLVIPDILTRKEDYGSCKL 139
Query: 82 LRVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGML 141
+ KK +++FSSPNIAK H GHLRSTIIG LA + E EV+R N++GDWG QFG+L
Sbjct: 140 VENKKVIIEFSSPNIAKPFHAGHLRSTIIGGFLANLYEKLGWEVIRMNYLGDWGKQFGLL 199
Query: 142 IEYLFEKFPNSEDANETAIGELQEFYRRSKNRFD-------SDPAFKERAQQAVVRLQSG 194
FE++ N E + I L + Y R + + + +A++ R++ G
Sbjct: 200 AVG-FERYGNEEALVKDPIHHLFDVYVRINKDIEEEGDSIPLEQSTNGKAREYFKRMEDG 258
Query: 195 EPKYHEAWAQICEISRKEFDKVYKRLRVDL-EEKGES-FYNPYIPGVIDELSKQGLVEES 252
+ + + W + E S +++ Y RL + GES + ID ++GL E
Sbjct: 259 DEEALKIWKRFREFSIEKYIDTYARLNIKYDVYSGESQVSKESMLKAIDLFKEKGLTHED 318
Query: 253 QGARVIFIEGVNIPL---IIVKSDGGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLH 309
+GA +I + N L I+ KSDG Y + D+ A R + + +IYV Q LH
Sbjct: 319 KGAVLIDLTKFNKKLGKAIVQKSDGTTLYLTRDVGAAMDRYEKYHFDKMIYVIASQQDLH 378
Query: 310 FDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAKNR 369
F K+ G+ A HV FG+V G + TR VV L ++L+E K +
Sbjct: 379 AAQFFEILKQMGFEWAK-----DLQHVNFGMVQG-----MSTRKGTVVFLDNILEETKEK 428
Query: 370 SKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNRLTNYTFSFDQMLNDKGNTAV 429
V +++ ++K E E+ A+ VG A D++ R+ NY F +++ML+ +G+T
Sbjct: 429 MHEV-MKKNENKYAQIEHPEEVADLVGISAVMIQDMQGKRINNYEFKWERMLSFEGDTGP 487
Query: 430 YLLYAHARICSIIRKSGKDIEELKKTGSL-VLDHADERALGLHLLHFSEVIEEALTNLLP 488
YL YAH+R+ S+ R + +E +L + L L + +V+ A+ P
Sbjct: 488 YLQYAHSRLRSVERNASGITQEKWINADFSLLKEPAAKLLIRLLGQYPDVLRNAIKTHEP 547
Query: 489 NVVCEYLYNLSEYFTRFYSNCQV 511
V YL+ L+ + Y V
Sbjct: 548 TTVVTYLFKLTHQVSSCYDVLWV 570
>2zue_A Arginyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP-binding,
cytoplasm, ligase, nucleotide-binding, protein
biosynthesis, ligase/RNA complex; HET: ANP; 2.00A
{Pyrococcus horikoshii} PDB: 2zuf_A
Length = 629
Score = 529 bits (1365), Expect = 0.0
Identities = 121/564 (21%), Positives = 230/564 (40%), Gaps = 72/564 (12%)
Query: 6 SNNAMGLWSKIKGKGTEFKGPQPVGQAIMKNLPPSEMIESCSV-AGPGFVNVVLSKNWMA 64
+ A L +K + P + + I++ L + V A G++NV + A
Sbjct: 43 TPIAFKLAKLLK------RPPIEIAEKIVEKLKLNLPEGIKDVKAVNGYINVFIDYPHFA 96
Query: 65 KNIQKMLVDGIETW--APKLRVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSN 122
+ + ++ + + + + KK +V+ +S N K +H+GH R+ I+GD +AR+L F
Sbjct: 97 RILINDILAKGDRFGSSEIGKGKKVIVEHTSVNPTKPLHMGHARNAILGDVMARILRFLG 156
Query: 123 VEVLRRNHVGDWGTQFGMLIEYL----FEKFPNSEDANETAIGE------LQEFYRRSKN 172
EV +N++ D G QF + E + E + + L Y
Sbjct: 157 YEVEVQNYIDDLGIQFAQVYWGYLRLKEEFERIMNELRERGLKDNPIDHALGLLYVEVNR 216
Query: 173 RFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKGESFY 232
R + +P + + + +L+SGE + ++ K+ + + + E +
Sbjct: 217 RLEDNPELENEIRDIMKKLESGELYGRKLAEEVVRAQMVTTYKLGVKYDLLVWE-SDIVR 275
Query: 233 NPYIPGVIDELSKQGLV-----EESQGARVIFIEGVNI-----PLIIVKSDGGFNYASTD 282
++ LSK + +GA V+ + + L++ +SDG Y D
Sbjct: 276 RKLFEIALELLSKNENFYIPSDGKYRGAFVMDLRKLFPDMKNPILVLRRSDGTATYTGKD 335
Query: 283 LAALWYRLNE----------------------------EKAEWIIYVTDVGQQLHFDMVF 314
+A ++ + A +I V Q+ +
Sbjct: 336 IAYHLWKFGKIDVDLLYKEWDSTTWTTAPDGKSMPNKFGNANIVINVIGAEQKHPQLAIK 395
Query: 315 SAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLV--DLLDEAKNRSKA 372
A + G+ A + Y H+ + V +GK R V +++ EA R++
Sbjct: 396 YALQLLGFEDAAANLY----HLAYEHVERPEGK-FSGRKGTWVGFTVDEVIQEAVKRARE 450
Query: 373 VLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNRLTNYTFSFDQMLNDKGNTAVYLL 432
++ E+ ++EE + AE VG GA +Y +K + F ++ +LN +G +A Y+
Sbjct: 451 LIEEKNPA--LSDEEKAEVAEKVGIGAIRYNLIKYSPDKKIIFRWEDVLNFEGESAPYIQ 508
Query: 433 YAHARICSIIRKSGK-----DIEELKKTGSLVLDHADERALGLHLLHFSEVIEEALTNLL 487
YAHAR SI+RK+ + D E L K ER L + L F ++E+A ++
Sbjct: 509 YAHARCSSILRKAEEEGIKVDPETLFKNADFTKLSERERELVIMLSKFPRIVEQAGKDVK 568
Query: 488 PNVVCEYLYNLSEYFTRFYSNCQV 511
P+++ + L+ F +FY + V
Sbjct: 569 PHLIAWFANELASLFNKFYMDHPV 592
>1iq0_A Arginyl-tRNA synthetase; riken structural genomics/proteomics
initiative, RSGI, structural genomics, ligase; 2.30A
{Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 d.67.2.1
Length = 592
Score = 503 bits (1296), Expect = e-174
Identities = 126/543 (23%), Positives = 221/543 (40%), Gaps = 72/543 (13%)
Query: 8 NAMGLWSKIKGKGTEFKGPQPVGQAIMKNLPPSEMIESCSVAGPGFVNVVLSKNWMAKNI 67
L +++ K PQ + Q + LP E +E G G++N L + +
Sbjct: 39 PLFALAKELR------KPPQAIAQELKDRLPLPEFVEEAVPVG-GYLNFRLRTEALLREA 91
Query: 68 QKMLVDGIETWAPKLRVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLR 127
+ +V+ +S N KE+HVGHLR+ +GD++AR+L ++ EVL
Sbjct: 92 LRPKAPFPRRP------GVVLVEHTSVNPNKELHVGHLRNIALGDAIARILAYAGREVLV 145
Query: 128 RNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQEFYRRSKNRFDSDPAFKERAQQA 187
N++ D G Q + L + + D E Y R DP ++
Sbjct: 146 LNYIDDTGRQAAETLFAL-RHYGLTWDGKEKYDHFAGRAYV----RLHQDPEYERLQPAI 200
Query: 188 VVRLQSGEPKYH-EAWAQICEISRKEFDKVYKRLRVDLEEKGESFYNPYIPGVIDELSKQ 246
L + E E +I + R + + E + + + L +
Sbjct: 201 EEVLHALERGELREEVNRILLAQMATMHALNARYDLLVWE-SDIVRAGLLQKALALLEQS 259
Query: 247 GLVEESQ-----GARVIFIEGVNI-----PLIIVKSDGGFNYASTDLAALWYRLNE---- 292
V + GA V+ V ++++S+G Y + D+A ++++
Sbjct: 260 PHVFRPREGKYAGALVMDASPVIPGLEDPFFVLLRSNGTATYYAKDIAFQFWKMGILEGL 319
Query: 293 ------------------------EKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDS 328
KAE I V DV Q +V +A AG+ + +
Sbjct: 320 RFRPYENPYYPGLRTSAPEGEAYTPKAEETINVVDVRQSHPQALVRAALALAGYPALAE- 378
Query: 329 TYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAKNRSKAVLIERGKDKEWTEEEL 388
KA H+ + VL +G+++ R V + ++L+EA R++A++ E+ D +
Sbjct: 379 ---KAHHLAYETVLL-EGRQMSGRKGLAVSVDEVLEEATRRARAIVEEKNPD----HPDK 430
Query: 389 EQTAEAVGYGAAKYFDLKNNRLTNYTFSFDQMLNDKGNTAVYLLYAHARICSIIRKSGKD 448
E+ A V GA ++ +K F + + L+ +G+T Y+ YAHAR SI+RK+G+
Sbjct: 431 EEAARMVALGAIRFSMVKTEPKKQIDFRYQEALSFEGDTGPYVQYAHARAHSILRKAGEW 490
Query: 449 IEELKKTGSLVLDHADERALGLHLLHFSEVIEEALTNLLPNVVCEYLYNLSEYFTRFYSN 508
L ERAL L LL F E + EA P+V+ +YL +L+ + +Y+
Sbjct: 491 GAP-----DLSQATPYERALALDLLDFEEAVLEAAEERTPHVLAQYLLDLAASWNAYYNA 545
Query: 509 CQV 511
+
Sbjct: 546 REN 548
>3fnr_A Arginyl-tRNA synthetase; transferase, PSI-2, NYSGXRC, struc
genomics, protein structure initiative; 2.20A
{Campylobacter jejuni}
Length = 464
Score = 126 bits (318), Expect = 1e-31
Identities = 91/495 (18%), Positives = 173/495 (34%), Gaps = 119/495 (24%)
Query: 58 LSKNWMAKNIQKMLVDGIETWAPKLRVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARM 117
LSK ++ + + L + + + + + ++++ S N +H+GH R + GD+L R+
Sbjct: 3 LSKTFLNELANQALTNPNDFTKGEKKQESFLLEYVSANPTGPLHIGHARGAVFGDTLTRL 62
Query: 118 LEFSNVEVLRRNHVGDWGTQFGMLIE-----YLFEKFPNSEDANETA-----IGEL-QEF 166
+ +V D G Q +L + + E I +L +E
Sbjct: 63 ARHLGYKFNTEYYVNDAGNQIYLLGLSILLSVKESILHENVEYPEQYYKGEYIVDLAKEA 122
Query: 167 YRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLE- 225
+ + F S+ A A + + ++ ++ ++
Sbjct: 123 FEKFGKEFFSEENIPSLADWAK------------------DKMLVLIKQNLEQAKIKIDS 164
Query: 226 ---EKGESFYNPYIPGVIDELSKQGLVEESQGA-------------RVIFIEGVNIPLII 269
E+ S+Y+ + ++ L + + E +G RVI
Sbjct: 165 YVSER--SYYDA-LNATLESLKEHKGIYEQEGKIWLASSQKGDEKDRVI----------- 210
Query: 270 VKSDGGFNYASTDLAALWYRLN--EEKAEWIIYV--TDVGQQLHFDMV--FSAAKRAGWL 323
++ DG Y + D+ Y + I + D H + AA L
Sbjct: 211 IREDGRGTYLAADIV---YHKDKMSRGYGKCINIWGAD-----HHGYIPRMKAAMEF--L 260
Query: 324 SADDSTYPKASHVGFG-LV-LGEDGKRLR--TRFSEVVRLVDLLDEAKNRSKAVLIERGK 379
D + + +V L +DG+ + R + + D++DE G
Sbjct: 261 GFDSNNL----EIILAQMVSLLKDGEPYKMSKRAGNFILMSDVVDEI-----------GS 305
Query: 380 DKEWTEEELEQTAEAVGYGAAKYFDLKNNRLTNYTFSFDQML---NDKGNTAVYLLYAHA 436
D A +Y L ++ + FD D N Y+ YAHA
Sbjct: 306 D------------------ALRYIFL--SKKCDTHLEFDISDLQKEDSSNPVYYINYAHA 345
Query: 437 RICSIIRKSGKDIEELKKTGSLVLDHADERALGLHLLHFSEVIEEALTNLLPNVVCEYLY 496
RI + K+GK I+++ K L+ D L L+ V+ +A + +YL
Sbjct: 346 RIHQVFAKAGKKIDDVMKADLQSLNQ-DGVNLLFEALNLKAVLNDAFEARALQKIPDYLK 404
Query: 497 NLSEYFTRFYSNCQV 511
NL+ F +FY+ +V
Sbjct: 405 NLAANFHKFYNENKV 419
>3gdz_A Arginyl-tRNA synthetase; klebsiella pneumoniae subsp. pneumo 78578,
structural genomics, PSI-2; HET: MSE; 2.20A {Klebsiella
pneumoniae subsp}
Length = 109
Score = 61.2 bits (149), Expect = 7e-12
Identities = 15/68 (22%), Positives = 33/68 (48%), Gaps = 6/68 (8%)
Query: 6 SNNAMGLWSKIKGKGTEFKGPQPVGQAIMKNLPPSEMIESCSVAGPGFVNVVLSKNWMAK 65
+N M + K+ P+ + + ++ +L + + +AGPGF+N+ L ++A
Sbjct: 44 ANGVMAVAKKLG------MAPRQLAEQVLSHLDLNGIANKVEIAGPGFINIFLDPAFLAD 97
Query: 66 NIQKMLVD 73
N+ + L
Sbjct: 98 NVNRALQS 105
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 55.4 bits (133), Expect = 3e-08
Identities = 44/197 (22%), Positives = 66/197 (33%), Gaps = 79/197 (40%)
Query: 314 FSAAKRAGWLSADD---STY-----------PKASHVGFGLVLGEDGKRLRTRFSEVVRL 359
AA+ W AD+ TY P + FG GE GKR+R +S
Sbjct: 1639 SKAAQDV-WNRADNHFKDTYGFSILDIVINNPVNLTIHFG---GEKGKRIRENYS----- 1689
Query: 360 VDLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNRLTNYTFSFDQ 419
A++ E D + E++ F N T+YTF ++
Sbjct: 1690 ------------AMIFETIVDGKLKTEKI--------------FKEINEHSTSYTFRSEK 1723
Query: 420 -MLNDKGNT--AVYLL-YAHARICSIIRKSGKDIEELKKTGSLVLDHADERALGLH---- 471
+L+ T A+ L+ A E+LK G + D A G H
Sbjct: 1724 GLLSATQFTQPALTLMEKA-------------AFEDLKSKGLIPADAT--FA-G-HSLGE 1766
Query: 472 ---LLHFSEV--IEEAL 483
L ++V IE +
Sbjct: 1767 YAALASLADVMSIESLV 1783
Score = 48.9 bits (116), Expect = 4e-06
Identities = 64/400 (16%), Positives = 115/400 (28%), Gaps = 122/400 (30%)
Query: 114 LARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKF-----------------PNSEDAN 156
+ + L + + V + VG QF ++ +F D
Sbjct: 61 VGKFLGYVSSLV-EPSKVG----QFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTT 115
Query: 157 ETAIGE-LQEFY--RRSKNRFD---SDPAFKERAQQAVVRL------QSGEPKYHEAWAQ 204
E ++ + R R S+ A + +L Q G + +
Sbjct: 116 LVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQ-GNT---DDY-- 169
Query: 205 ICEISRKEFD---KVYKRLRVDLEEKGESFYNPYIPGVIDELSK--QGLVEESQGARVIF 259
F+ +Y+ Y+ + +I ++ L+ + A +F
Sbjct: 170 --------FEELRDLYQT------------YHVLVGDLIKFSAETLSELIRTTLDAEKVF 209
Query: 260 IEGVNI-----------------------PLIIVKSDGGFNYASTDLAALWYRLNEEKAE 296
+G+NI PLI V +Y T L + E
Sbjct: 210 TQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLA--HYVVT-AKLLGFT-PGELRS 265
Query: 297 WIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEV 356
++ T Q L + + W S S KA V F + G R +
Sbjct: 266 YLKGATGHSQGLVTAVAIAETD--SWESFFVSVR-KAITVLFFI-----GVRCYEAYPNT 317
Query: 357 VRLVDLLDEAKNRSKAV----LIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNRLTN 412
+L+++ ++ V L +E ++ + +T + G L N N
Sbjct: 318 SLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGA-KN 376
Query: 413 YTFSFDQMLNDKGNTAVYLLYAHARICSIIRK----SGKD 448
S G LY + +RK SG D
Sbjct: 377 LVVS--------GPPQS--LYG---LNLTLRKAKAPSGLD 403
Score = 45.4 bits (107), Expect = 4e-05
Identities = 76/460 (16%), Positives = 133/460 (28%), Gaps = 173/460 (37%)
Query: 1 MLLECSNNAMGLWSKIKGKGTEF----KGPQPVGQAIMKNLPPSEMIESCSVAGPG---- 52
L E + K+ +G + P P + + S ++ P
Sbjct: 194 TLSELIRTTLD-AEKVFTQGLNILEWLENPSNT--------PDKDYLLSIPISCPLIGVI 244
Query: 53 -FVN-VVLSKNW------MAKNIQKMLV--DGI---------ETWAPKLR-VKKAV-VDF 91
+ VV +K + ++ G+ ++W V+KA+ V F
Sbjct: 245 QLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLF 304
Query: 92 --------SSPNIAKEMHVGHLRSTIIGDSLAR-------MLEFSNVEVLRRNHVGDWGT 136
+ PN + L +I+ DSL ML ++ L + V D
Sbjct: 305 FIGVRCYEAYPNTS-------LPPSILEDSLENNEGVPSPML---SISNLTQEQVQD--- 351
Query: 137 QFGMLIEYLFEKFPNSEDANETAIGELQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEP 196
+ P + I L N A+ VV SG P
Sbjct: 352 ----YVNKTNSHLPAGKQV---EIS-L-------VN----------GAKNLVV---SGPP 383
Query: 197 K--------YHEAWAQI-CEISRKEFDK----VYKR-LRVDLEEKGESFYNPYIPGVIDE 242
+ +A A + SR F + R L V F++ + D
Sbjct: 384 QSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPV-----ASPFHSHLLVPASDL 438
Query: 243 LSKQGLVEESQGARVIFIEG--VNIPLIIVKS--DGGFNYASTDLAALWYRLNEEKAEWI 298
+ + LV+ + + + IP V DG +DL L
Sbjct: 439 I-NKDLVKNN-----VSFNAKDIQIP---VYDTFDG------SDLRVL------------ 471
Query: 299 IYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVR 358
+ +++ D + W + +T KA+H+ L G G
Sbjct: 472 --SGSISERI-VDCIIR--LPVKW---ETTTQFKATHI---LDFGPGG---------ASG 511
Query: 359 LVDLLDEAKNRSKAVLIERGKDKEWTEEELE-QTAEAVGY 397
L L K+ + +I G L+ + G+
Sbjct: 512 LGVLTHRNKDGTGVRVIVAG--------TLDINPDDDYGF 543
Score = 34.6 bits (79), Expect = 0.088
Identities = 56/306 (18%), Positives = 94/306 (30%), Gaps = 124/306 (40%)
Query: 246 QG---------LVEESQGARVIFIE---------GVNIPLIIVKSD--------GGF--- 276
QG L + S+ A+ ++ G +I L IV ++ GG
Sbjct: 1624 QGSQEQGMGMDLYKTSKAAQDVWNRADNHFKDTYGFSI-LDIVINNPVNLTIHFGGEKGK 1682
Query: 277 ----NYAS------TDLAALWYRLNEEKAEW---IIYVTDVG-------QQ--LHFDMVF 314
NY++ D ++ +E E + ++ G Q L +
Sbjct: 1683 RIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPAL---TLM 1739
Query: 315 SAA-----KRAGWLSADDSTYPKASHVGF-GLVLGE------DGKRLRTRFSEVVRLV-- 360
A K G + AD + F G LGE + +V +V
Sbjct: 1740 EKAAFEDLKSKGLIPADAT---------FAGHSLGEYAALASLADVMS--IESLVEVVFY 1788
Query: 361 --DLLDEAKNRSK---------AVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNR 409
+ A R + A+ R +++E L+ E VG +
Sbjct: 1789 RGMTMQVAVPRDELGRSNYGMIAINPGRVA-ASFSQEALQYVVERVGK--------RTGW 1839
Query: 410 L---TNYTFSFDQMLNDKGNT--------AVYLLYAHARICSIIRKSGKDIEELKKTGSL 458
L NY N + A+ + + + I+ DI EL+K+ SL
Sbjct: 1840 LVEIVNY--------NVENQQYVAAGDLRALDTV---TNVLNFIKLQKIDIIELQKSLSL 1888
Query: 459 --VLDH 462
V H
Sbjct: 1889 EEVEGH 1894
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 54.5 bits (130), Expect = 6e-08
Identities = 77/551 (13%), Positives = 141/551 (25%), Gaps = 188/551 (34%)
Query: 76 ETWAPKLRVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHV---G 132
ET + + K + F + D +L S E+ +H+
Sbjct: 10 ETGEHQYQYKDILSVFE-DAFVDNFDCKD-----VQDMPKSIL--SKEEI---DHIIMSK 58
Query: 133 DWGTQFGMLIEYLFEKFPNSEDANETAIGE-LQEFYRRSKNRF---DSDPAFKERA-QQA 187
D + L L K E+ + + E L+ Y+ + P+ R +
Sbjct: 59 DAVSGTLRLFWTLLSK---QEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQ 115
Query: 188 VVRLQSGE---PKYHEAWAQICEISRKEFDKVYKRLRVDLEEKGESFYNPYI-----PGV 239
RL + KY+ +SR + Y +LR L E + G
Sbjct: 116 RDRLYNDNQVFAKYN--------VSRLQ---PYLKLRQALLELRP---AKNVLIDGVLGS 161
Query: 240 IDELSKQGLVEESQGARVIFIEGVNIPLIIVKSDGGF-----NYASTD-----LAALWYR 289
K + + + + F N S + L L Y+
Sbjct: 162 ----GKTWVALDV--CL-------SYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQ 208
Query: 290 LNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKA----SHV-------GF 338
++ + +++ ++H A R S Y +V F
Sbjct: 209 IDPNWTSRSDHSSNIKLRIHS---IQAELRRLLKSKP---YENCLLVLLNVQNAKAWNAF 262
Query: 339 GL---VLGEDGKRLRTRFSEVVRLVDLLDEAKNRSKAVLIERGKDKEWTEEE-LEQTAEA 394
L +L L TRF +V + A + L T +E +
Sbjct: 263 NLSCKIL------LTTRFKQVTDFLS----AATTTHISLDHH--SMTLTPDEVKSLLLKY 310
Query: 395 VGYGAAKYFDLK---------------------NNRLTNYTFSFDQMLNDKGNTAV---- 429
+ + DL N+ + DK T +
Sbjct: 311 LD---CRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNW----KHVNCDKLTTIIESSL 363
Query: 430 -----YLLYAHARICSIIRKSGK--------------------DIEELKKTGSLVLDHAD 464
S+ S + +L K SLV
Sbjct: 364 NVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKY-SLVEKQPK 422
Query: 465 ERALGLHLLHFSE-------------VIEE-------ALTNLLPNVVCEYLYN------- 497
E + + ++ +++ +L+P + +Y Y+
Sbjct: 423 ESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLK 482
Query: 498 ---LSEYFTRF 505
E T F
Sbjct: 483 NIEHPERMTLF 493
Score = 31.7 bits (71), Expect = 0.73
Identities = 50/324 (15%), Positives = 97/324 (29%), Gaps = 102/324 (31%)
Query: 35 KNLPPSEMIESCSVAGPGFVNVVLSKNWMAKNIQKMLVDGIETW-------APKL-RVKK 86
++LP E + P +++ I + + DG+ TW KL + +
Sbjct: 316 QDLPR----EVLTTN-PRRLSI----------IAESIRDGLATWDNWKHVNCDKLTTIIE 360
Query: 87 AVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNV--EVLRRNHVGDWGTQFGMLIEY 144
+ ++ P ++M D L+ +++ +L W +
Sbjct: 361 SSLNVLEPAEYRKMF----------DRLSVFPPSAHIPTILLSLI----WFDVIKSDVMV 406
Query: 145 LFEKFPNS----EDANETAIGELQEFYRRSKNRFDSDPA----FKERAQQAVVRLQSGEP 196
+ K + E+ I + Y K + +++ A +
Sbjct: 407 VVNKLHKYSLVEKQPKESTIS-IPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLI 465
Query: 197 K------------YHEAWAQICEISRKEFDKVY-------KRLRVDLEEKGES------- 230
+H + E F V+ +++R D S
Sbjct: 466 PPYLDQYFYSHIGHHLKNIEHPE-RMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTL 524
Query: 231 ----FYNPYIPGVIDELSKQGLVEESQGARVIFIEGVNIPLIIVKSDGGFNYASTDLA-- 284
FY PYI E A + F+ + LI K TDL
Sbjct: 525 QQLKFYKPYI------CDNDPKYERLVNAILDFLPKIEENLICSK--------YTDLLRI 570
Query: 285 ALWYRLNEEKAEWIIYVTDVGQQL 308
AL + E++A I+ + +Q+
Sbjct: 571 AL---MAEDEA---IF-EEAHKQV 587
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 34.0 bits (77), Expect = 0.065
Identities = 17/74 (22%), Positives = 29/74 (39%), Gaps = 15/74 (20%)
Query: 344 EDGKRLRTRFSEVVRLVDLLDEAKNRSKAVLIERGKD--KEWTEEELEQTAEAVGYGAAK 401
E ++ R + RL +L D A + E+ K +EW + + EQ +
Sbjct: 85 ESIRKWREEQRK--RLQEL-DAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNK------ 135
Query: 402 YFDLKNNRLTNYTF 415
NNR+ + F
Sbjct: 136 ----INNRIADKAF 145
Score = 29.0 bits (64), Expect = 2.7
Identities = 15/71 (21%), Positives = 27/71 (38%), Gaps = 17/71 (23%)
Query: 124 EVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDAN-ETAIGELQEFYRR---------SKNR 173
E +R+ W + ++ L E E A +L+E+ +R NR
Sbjct: 85 ESIRK-----WREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNR 139
Query: 174 FDSDPAF-KER 183
+D AF ++
Sbjct: 140 -IADKAFYQQP 149
>3k4o_A Isopentenyl phosphate kinase; small molecule kinase, ATP-binding,
transferase, methanocald jannaschii, isopentenyl
monophosphate; 2.05A {Methanocaldococcus jannaschii}
PDB: 3k4y_A* 3k52_A* 3k56_A*
Length = 266
Score = 34.1 bits (78), Expect = 0.072
Identities = 22/82 (26%), Positives = 30/82 (36%), Gaps = 15/82 (18%)
Query: 223 DLEEKGESFYNPYIPGVIDELSKQGLVEESQGARVIFIEGVNIPLIIVKSDGGFNYASTD 282
G+ I E+ K+ LV VI I++ G+ S D
Sbjct: 121 SFVVFGDKLIFD--TSAIKEMLKRNLVP------VIH------GDIVIDDKNGYRIISGD 166
Query: 283 LAALWYRLNEEKAEWIIYVTDV 304
Y NE KA+ I+Y TDV
Sbjct: 167 DIV-PYLANELKADLILYATDV 187
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 33.0 bits (74), Expect = 0.12
Identities = 8/45 (17%), Positives = 20/45 (44%), Gaps = 18/45 (40%)
Query: 65 KNIQKMLVDGIETWAPKLRVKKAVVDFSSPNIAKEMHVGHLRSTI 109
+ ++K L ++ +A D S+P +A +++T+
Sbjct: 20 QALKK-LQASLKLYAD---------D-SAPALA-------IKATM 46
>2a9g_A Arginine deiminase; arginine degradation pathway, catalyti
mechanism, hydrolase; HET: ARG; 2.30A {Pseudomonas
aeruginosa} SCOP: d.126.1.4 PDB: 1rxx_A 2abr_A* 2aci_A
2aaf_A*
Length = 418
Score = 32.1 bits (72), Expect = 0.41
Identities = 23/137 (16%), Positives = 40/137 (29%), Gaps = 8/137 (5%)
Query: 279 ASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKA--SHV 336
A +A + + + + +H D VFS R +P+ V
Sbjct: 248 AIGQVAQSLFAKGAAERVIVAGLPKSRAAMHLDTVFSFCDRDLVT-----VFPEVVKEIV 302
Query: 337 GFGLVLGEDGKRLRTRFSEVVRLVDLLDEAKNRSKAVLIERGKDKEWTEEE-LEQTAEAV 395
F L E ++++ E+ K ++E G + E E + V
Sbjct: 303 PFSLRPDPSSPYGMNIRREEKTFLEVVAESLGLKKLRVVETGGNSFAAEREQWDDGNNVV 362
Query: 396 GYGAAKYFDLKNNRLTN 412
N TN
Sbjct: 363 CLEPGVVVGYDRNTYTN 379
>3tun_A Methionyl-tRNA synthetase; aminoacyl-tRNA synthetase, AARS, metrs,
parasite, protein-IN complex, translation, nucleotide
binding; HET: C13; 2.55A {Trypanosoma brucei}
Length = 542
Score = 30.7 bits (69), Expect = 1.3
Identities = 8/16 (50%), Positives = 12/16 (75%)
Query: 101 HVGHLRSTIIGDSLAR 116
H+GH+ ST+I D + R
Sbjct: 25 HIGHVYSTLITDVIGR 40
>2x5f_A Aspartate_tyrosine_phenylalanine pyridoxal-5' phosphate-dependent
aminotransferase...; HET: PLP EPE; 1.80A {Staphylococcus
aureus}
Length = 430
Score = 30.4 bits (69), Expect = 1.5
Identities = 6/53 (11%), Positives = 18/53 (33%)
Query: 184 AQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKGESFYNPYI 236
Q AV + ++ + Q + ++ ++ + + D Y+
Sbjct: 315 TQSAVKHVLKNNKQFDKEIEQNIQTLKERYEVTKEVVYADQYHSHWQAYDFNS 367
>1dpg_A G6PD, glucose 6-phosphate dehydrogenase; oxidoreductase, NADP/NAD,
glucose metabolism, oxidoreductase (CHOH(D) - NAD(P));
2.00A {Leuconostoc mesenteroides} SCOP: c.2.1.3 d.81.1.5
PDB: 1e7y_A* 1e7m_A* 1h93_A 1h94_A* 1h9a_A* 1e77_A*
1h9b_A 2dpg_A*
Length = 485
Score = 30.2 bits (69), Expect = 1.6
Identities = 16/100 (16%), Positives = 37/100 (37%), Gaps = 16/100 (16%)
Query: 176 SDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKV--YKRLRVDLEEKGESFYN 233
+D FK+ + + + + + EA+ + + Y L+ +EE + F
Sbjct: 50 NDDEFKQLVRDCI-KDFTDDQAQAEAFIEHFSYRAHDVTDAASYAVLKEAIEEAADKFDI 108
Query: 234 P------------YIPGVIDELSKQGLVEESQGARVIFIE 261
+ + L +GL+ ++ R++ IE
Sbjct: 109 DGNRIFYMSVAPRFFGTIAKYLKSEGLLADTGYNRLM-IE 147
>3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase,
tRNA ligase metrs, methionine, translation, ATP-binding;
HET: ME8; 2.00A {Leishmania major}
Length = 564
Score = 30.3 bits (69), Expect = 1.9
Identities = 9/16 (56%), Positives = 12/16 (75%)
Query: 101 HVGHLRSTIIGDSLAR 116
H+GH+ ST+I D L R
Sbjct: 42 HIGHVYSTLIVDVLGR 57
>1qrj_B HTLV-I capsid protein; retrovirus, two-domain protein, alpha
helical protein, heteronuclear spectroscopy; NMR {Human
t-cell lymphotrophic virus TYPE1} SCOP: a.28.3.1
a.73.1.1
Length = 199
Score = 28.9 bits (64), Expect = 2.8
Identities = 6/33 (18%), Positives = 12/33 (36%), Gaps = 5/33 (15%)
Query: 31 QAIMKNLPP-----SEMIESCSVAGPGFVNVVL 58
Q +++ +M+ +C P VL
Sbjct: 167 QKLLQARGHTNSPLGDMLRACQTWTPKDKTKVL 199
>2hpu_A NOSL protein; alpha beta topology, metal transport; NMR
{Achromobacter cycloclastes} SCOP: d.357.1.1 PDB: 2hq3_A
Length = 175
Score = 28.9 bits (64), Expect = 2.8
Identities = 12/65 (18%), Positives = 21/65 (32%), Gaps = 6/65 (9%)
Query: 269 IVKSDGG--FNYAST-DLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSA 325
I ++ D A + +IYV D+G + W++A
Sbjct: 38 IFLEGSPAPLFFSQVRDAIAYARGPEQIAPILVIYVNDMGAA---GATWDQPGDGNWIAA 94
Query: 326 DDSTY 330
D + Y
Sbjct: 95 DKAFY 99
>3sp1_A Cysteinyl-tRNA synthetase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid, LYME
disease; HET: AMP; 2.55A {Borrelia burgdorferi}
Length = 501
Score = 29.5 bits (67), Expect = 3.1
Identities = 11/31 (35%), Positives = 17/31 (54%), Gaps = 3/31 (9%)
Query: 101 HVGHLRSTIIGDSLARMLEFSNVEVLRRNHV 131
H+G+ R+ I GD L + L F +V N+
Sbjct: 57 HIGNFRTYIFGDLLIKTLRFLGYKV---NYA 84
>2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein
biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus}
PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A*
Length = 878
Score = 29.5 bits (67), Expect = 3.6
Identities = 9/18 (50%), Positives = 14/18 (77%)
Query: 100 MHVGHLRSTIIGDSLARM 117
+H+GHL++ +GD LAR
Sbjct: 48 LHMGHLKNYTMGDVLARF 65
Score = 28.3 bits (64), Expect = 7.8
Identities = 13/70 (18%), Positives = 19/70 (27%)
Query: 339 GLVLGEDGKRLRTRFSEVVRLVDLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYG 398
G+VL VVRL + ++ L K E + +
Sbjct: 575 GMVLAWTDFGPVEVEGSVVRLPEPTRIRLEIPESALSLEDVRKMGAELRPHEDGTLHLWK 634
Query: 399 AAKYFDLKNN 408
A K N
Sbjct: 635 PAVMSKSKGN 644
>2d5b_A Methionyl-tRNA synthetase; rossmann fold, class 1A AARS, isomerase,
structural genomics, NPPSFA; 1.80A {Thermus
thermophilus} SCOP: a.27.1.1 c.26.1.1 PDB: 1woy_A 1a8h_A
2d54_A
Length = 500
Score = 29.1 bits (66), Expect = 4.0
Identities = 8/16 (50%), Positives = 12/16 (75%)
Query: 101 HVGHLRSTIIGDSLAR 116
H+GH +T++ D LAR
Sbjct: 19 HLGHAYTTVVADFLAR 34
>2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein
biosynthesis, ligase, aminoacyl- synthetase; HET: ADN
CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A*
Length = 524
Score = 29.1 bits (66), Expect = 4.2
Identities = 7/16 (43%), Positives = 10/16 (62%)
Query: 101 HVGHLRSTIIGDSLAR 116
H+GH I D++AR
Sbjct: 28 HIGHAYEYIATDAIAR 43
>2csx_A Methionyl-tRNA synthetase; ligase, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, ligase/RNA complex; 2.70A {Aquifex aeolicus}
PDB: 2ct8_A*
Length = 497
Score = 29.1 bits (66), Expect = 4.3
Identities = 8/16 (50%), Positives = 12/16 (75%)
Query: 101 HVGHLRSTIIGDSLAR 116
H+GH +TI D++AR
Sbjct: 21 HLGHAYTTIAADTIAR 36
>2vqx_A Metalloproteinase; thermolysin-like structure, zinc, protease,
hydrolase, metalloprotease; 1.82A {Serratia
proteamaculans}
Length = 341
Score = 29.0 bits (64), Expect = 4.3
Identities = 13/62 (20%), Positives = 19/62 (30%), Gaps = 1/62 (1%)
Query: 274 GGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKA 333
G N A A EKA +I Y T + L D F+ + + +
Sbjct: 268 GIPNRAFYLAATALGGYAWEKAGYIWYDTLCDKALPQDADFATF-ARTTVKHAEQRFDSK 326
Query: 334 SH 335
Sbjct: 327 VA 328
>1li5_A Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys; cysteine,
E.coli, ligase; 2.30A {Escherichia coli} SCOP: a.27.1.1
c.26.1.1 PDB: 1li7_A 1u0b_B
Length = 461
Score = 28.7 bits (65), Expect = 4.6
Identities = 9/25 (36%), Positives = 15/25 (60%)
Query: 101 HVGHLRSTIIGDSLARMLEFSNVEV 125
H+GH R+ + D +AR L F ++
Sbjct: 37 HIGHGRTFVAFDVVARYLRFLGYKL 61
>3pei_A Cytosol aminopeptidase; structural genomics, center for structural
genomics of infec diseases, csgid, alpha-beta sandwich;
HET: MSE; 2.70A {Francisella tularensis subsp}
Length = 486
Score = 28.9 bits (65), Expect = 4.7
Identities = 20/125 (16%), Positives = 38/125 (30%), Gaps = 12/125 (9%)
Query: 373 VLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNRLTNYTFSFDQMLNDKGNTAVYLL 432
+L+ G +++ E ++ AA+ LK + + D + L
Sbjct: 63 ILLGLGLRQDFIASEYDKIIAK----AAEQ--LKKLAIKEISVDIDYAFENDNVKQFTLD 116
Query: 433 YAHARICSIIR----KSGKDIEELKKTGSLVLDHADERALGLHLLHFSEVIEEA--LTNL 486
A I K+ K+ L++ + D + A L NL
Sbjct: 117 TVRALISETYVFDQLKTEKENYSLEQIELVYSGDQDIEDSAKIGSAIACGQNYAKDLQNL 176
Query: 487 LPNVV 491
N+
Sbjct: 177 PANIC 181
>4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding,
protein biosynthesis I aminoacyl-tRNA synthetase,
ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A
4ari_A* 4as1_A*
Length = 880
Score = 29.1 bits (66), Expect = 4.7
Identities = 9/18 (50%), Positives = 14/18 (77%)
Query: 100 MHVGHLRSTIIGDSLARM 117
+H+GH+R+ IGD +AR
Sbjct: 68 LHMGHVRNYTIGDVIARY 85
>4dlp_A Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA synthetase, class
IA:methionyl-tRNA...; structural genomics; 2.65A
{Brucella melitensis biovar abortus 230ORGANISM_TAXID}
Length = 536
Score = 28.8 bits (65), Expect = 4.7
Identities = 7/16 (43%), Positives = 10/16 (62%)
Query: 101 HVGHLRSTIIGDSLAR 116
H+GH I D++AR
Sbjct: 41 HIGHAYELIATDAMAR 56
>1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino
acid, aminoacylation, trnaLeu, structural genomics;
2.05A {Pyrococcus horikoshii}
Length = 810
Score = 28.8 bits (64), Expect = 4.9
Identities = 9/17 (52%), Positives = 12/17 (70%)
Query: 100 MHVGHLRSTIIGDSLAR 116
+HVGH R+ I D +AR
Sbjct: 49 LHVGHARTYTIPDVIAR 65
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural
genomics, structural genomics consortium, SGC,
hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Length = 230
Score = 28.4 bits (64), Expect = 5.1
Identities = 12/50 (24%), Positives = 20/50 (40%), Gaps = 6/50 (12%)
Query: 437 RICSIIRKSGKDIEELKKTGSLVLDHADERALGLHLLHFSEVIEEALTNL 486
RI +I + ++ +LD AD+ L F E I ++L
Sbjct: 152 RIKQLIELDYLNPGSIR---LFILDEADKL---LEEGSFQEQINWIYSSL 195
>3c8z_A Cysteinyl-tRNA synthetase; cysteine ligase, rossmann fold, Cys-SA
inhibitor, zinc binding, ATP-binding, aminoacyl-tRNA
synthetase; HET: 5CA 1PE EPE; 1.60A {Mycobacterium
smegmatis}
Length = 414
Score = 28.7 bits (65), Expect = 5.5
Identities = 6/25 (24%), Positives = 12/25 (48%)
Query: 101 HVGHLRSTIIGDSLARMLEFSNVEV 125
H+GH + + D + R+ + V
Sbjct: 54 HLGHAATYLTFDLVHRLWLDAGHTV 78
>1jwq_A N-acetylmuramoyl-L-alanine amidase CWLV; open alpha-beta-alpha,
hydrolase; 1.80A {Paenibacillus polymyxa} SCOP: c.56.5.6
Length = 179
Score = 27.9 bits (63), Expect = 5.7
Identities = 12/42 (28%), Positives = 21/42 (50%), Gaps = 7/42 (16%)
Query: 372 AVLIERG-----KDKEW--TEEELEQTAEAVGYGAAKYFDLK 406
AVL+E G K++ E+ + A+ + G +Y D+K
Sbjct: 138 AVLLEVGYLSNAKEEATLFDEDFQNRVAQGIADGITEYLDVK 179
>3tqo_A Cysteinyl-tRNA synthetase; protein synthesis, ligase; 2.30A
{Coxiella burnetii}
Length = 462
Score = 28.3 bits (64), Expect = 6.0
Identities = 12/25 (48%), Positives = 14/25 (56%)
Query: 101 HVGHLRSTIIGDSLARMLEFSNVEV 125
H+GH RS II D + R L EV
Sbjct: 40 HIGHGRSWIIFDMVVRYLRMRGYEV 64
>1wz2_A Leucyl-tRNA synthetase; ligase, riken structural
genomics/proteomics initiativ structural genomics,
ligase-RNA complex; 3.21A {Pyrococcus horikoshii}
Length = 967
Score = 28.4 bits (63), Expect = 8.0
Identities = 9/17 (52%), Positives = 12/17 (70%)
Query: 100 MHVGHLRSTIIGDSLAR 116
+HVGH R+ I D +AR
Sbjct: 49 LHVGHARTYTIPDVIAR 65
>1l6w_A Fructose-6-phosphate aldolase 1; alpha-beta barrel, domain
swapping, lyase; 1.93A {Escherichia coli} SCOP: c.1.10.1
Length = 220
Score = 27.6 bits (62), Expect = 8.6
Identities = 9/59 (15%), Positives = 21/59 (35%), Gaps = 12/59 (20%)
Query: 440 SIIRKSGKDIEE-LKKTGSLVLDHADERALGLHL----LHFSEVIEEA--LTNLLPNVV 491
SII K ++ L + + L ++ +A L +++ ++V
Sbjct: 30 SIIAAGKKPLDVVLPQLHEAMGGQGR-----LFAQVMATTAEGMVNDALKLRSIIADIV 83
>1bs0_A Protein (8-amino-7-oxonanoate synthase); PLP-dependent acyl-COA
synthase, biotin biosynthesis, 8-AMIN oxonanoate
synthase; 1.65A {Escherichia coli} SCOP: c.67.1.4 PDB:
2g6w_A* 1dje_A* 1dj9_A*
Length = 384
Score = 27.9 bits (63), Expect = 8.6
Identities = 21/84 (25%), Positives = 30/84 (35%), Gaps = 30/84 (35%)
Query: 278 YASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFS-------------AAKRAG-WL 323
+A D+ L L + VT+ G VFS ++ WL
Sbjct: 150 FAHNDVTHLARLLASPCPGQQMVVTE-G-------VFSMDGDSAPLAEIQQVTQQHNGWL 201
Query: 324 SADDSTYPKASHVGFGLVLGEDGK 347
DD +H G G V+GE G+
Sbjct: 202 MVDD------AH-GTG-VIGEQGR 217
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.135 0.397
Gapped
Lambda K H
0.267 0.0749 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 8,180,412
Number of extensions: 516509
Number of successful extensions: 1447
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1406
Number of HSP's successfully gapped: 58
Length of query: 512
Length of database: 6,701,793
Length adjustment: 98
Effective length of query: 414
Effective length of database: 3,965,535
Effective search space: 1641731490
Effective search space used: 1641731490
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (26.5 bits)