Your job contains 1 sequence.
>010357
MIKMSKKKETVKEIFASCSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVL
VNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRF
HWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADR
ILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETP
VLIGLDEKKLPEDKSHVRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCG
SRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLR
CKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEY
VHRVGRTARLGERGDSLLFLQPVEMDYLQDLEKHGVSLTEYPLLKVLDSFPLYGQKPRVK
KFLTTESHPWILSLQNALESFIIHEILSCSQK
The BLAST search returned 2 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 010357
(512 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2064844 - symbol:AT2G40700 species:3702 "Arabi... 1819 1.3e-187 1
DICTYBASE|DDB_G0271708 - symbol:ddx31 "DEAD/DEAH box heli... 627 3.9e-90 2
RGD|1304895 - symbol:Ddx31 "DEAD (Asp-Glu-Ala-Asp) box po... 553 3.9e-89 2
ZFIN|ZDB-GENE-030131-3973 - symbol:ddx31 "DEAD (Asp-Glu-A... 543 1.2e-87 2
FB|FBgn0027602 - symbol:CG8611 species:7227 "Drosophila m... 811 8.5e-81 1
ASPGD|ASPL0000044206 - symbol:AN1949 species:162425 "Emer... 419 5.2e-69 3
DICTYBASE|DDB_G0282741 - symbol:ddx18 "DEAD/DEAH box heli... 408 2.8e-68 3
TAIR|locus:2152099 - symbol:AT5G65900 species:3702 "Arabi... 422 4.7e-67 3
UNIPROTKB|E2RFA3 - symbol:DDX18 "Uncharacterized protein"... 405 5.4e-67 3
MGI|MGI:1914192 - symbol:Ddx18 "DEAD (Asp-Glu-Ala-Asp) bo... 411 5.4e-67 3
UNIPROTKB|I3L840 - symbol:DDX18 "Uncharacterized protein"... 402 9.1e-67 3
UNIPROTKB|F1NEQ3 - symbol:DDX18 "Uncharacterized protein"... 414 9.6e-67 3
UNIPROTKB|F1N533 - symbol:DDX18 "Uncharacterized protein"... 402 9.8e-67 3
UNIPROTKB|D4A824 - symbol:Ddx18 "Protein Ddx18" species:1... 409 1.0e-66 3
UNIPROTKB|F1RY13 - symbol:DDX18 "Uncharacterized protein"... 402 1.0e-66 3
UNIPROTKB|F1MSX0 - symbol:F1MSX0 "Uncharacterized protein... 402 1.1e-66 3
RGD|1549712 - symbol:Ddx18 "DEAD (Asp-Glu-Ala-Asp) box po... 409 1.4e-66 3
UNIPROTKB|I3L7B7 - symbol:DDX18 "Uncharacterized protein"... 402 1.7e-66 3
UNIPROTKB|Q9NVP1 - symbol:DDX18 "ATP-dependent RNA helica... 402 3.3e-66 3
ASPGD|ASPL0000056064 - symbol:AN0204 species:162425 "Emer... 469 1.6e-63 2
FB|FBgn0025140 - symbol:pit "pitchoune" species:7227 "Dro... 389 1.9e-63 3
POMBASE|SPAC1F7.02c - symbol:has1 "ATP-dependent RNA heli... 433 8.8e-63 2
CGD|CAL0000117 - symbol:DBP7 species:5476 "Candida albica... 477 3.9e-62 2
CGD|CAL0003050 - symbol:HAS1 species:5476 "Candida albica... 420 2.6e-61 2
UNIPROTKB|Q5AK59 - symbol:HAS1 "ATP-dependent RNA helicas... 420 2.6e-61 2
WB|WBGene00015232 - symbol:B0511.6 species:6239 "Caenorha... 414 1.1e-60 2
ZFIN|ZDB-GENE-030131-9685 - symbol:ddx18 "DEAD (Asp-Glu-A... 418 1.7e-60 2
SGD|S000004903 - symbol:HAS1 "ATP-dependent RNA helicase"... 412 2.3e-60 2
SGD|S000001732 - symbol:DBP7 "Putative ATP-dependent RNA ... 448 4.1e-60 2
POMBASE|SPBC21H7.04 - symbol:dbp7 "ATP-dependent RNA heli... 606 4.5e-59 1
GENEDB_PFALCIPARUM|PFF1500c - symbol:PFF1500c "DEAD/DEAH ... 395 1.6e-56 2
UNIPROTKB|C6KTE4 - symbol:PFF1500c "DEAD/DEAH box ATP-dep... 395 1.6e-56 2
UNIPROTKB|F8WAJ0 - symbol:DDX31 "Probable ATP-dependent R... 580 2.5e-56 1
TAIR|locus:2086909 - symbol:AT3G18600 species:3702 "Arabi... 377 4.0e-56 2
UNIPROTKB|Q9H8H2 - symbol:DDX31 "Probable ATP-dependent R... 580 4.9e-56 1
UNIPROTKB|F1N5H8 - symbol:DDX31 "Uncharacterized protein"... 551 3.0e-53 1
UNIPROTKB|F1S0U0 - symbol:DDX31 "Uncharacterized protein"... 544 2.3e-52 1
UNIPROTKB|F1NM06 - symbol:DDX31 "Uncharacterized protein"... 535 1.5e-51 1
CGD|CAL0000864 - symbol:DRS1 species:5476 "Candida albica... 379 6.7e-51 2
UNIPROTKB|Q5ACK7 - symbol:DRS1 "ATP-dependent RNA helicas... 379 6.7e-51 2
UNIPROTKB|Q5ZLB0 - symbol:DDX47 "Uncharacterized protein"... 336 6.4e-50 2
UNIPROTKB|Q29S22 - symbol:DDX47 "Probable ATP-dependent R... 339 1.5e-49 2
UNIPROTKB|Q9H0S4 - symbol:DDX47 "Probable ATP-dependent R... 335 4.6e-49 2
MGI|MGI:1915005 - symbol:Ddx47 "DEAD (Asp-Glu-Ala-Asp) bo... 334 2.5e-48 2
UNIPROTKB|G3V727 - symbol:Ddx47 "Protein Ddx47" species:1... 334 2.5e-48 2
ASPGD|ASPL0000013201 - symbol:AN4233 species:162425 "Emer... 341 5.8e-48 2
ASPGD|ASPL0000061778 - symbol:AN0589 species:162425 "Emer... 357 1.6e-47 2
DICTYBASE|DDB_G0284017 - symbol:ddx10 "DEAD/DEAH box heli... 344 6.4e-47 2
ZFIN|ZDB-GENE-050522-359 - symbol:zgc:112350 "zgc:112350"... 331 1.9e-46 2
UNIPROTKB|Q83DM8 - symbol:rhlE "ATP-dependent RNA helicas... 336 5.0e-46 2
TIGR_CMR|CBU_0670 - symbol:CBU_0670 "ATP-dependent RNA he... 336 5.0e-46 2
UNIPROTKB|E2RN03 - symbol:DDX47 "Uncharacterized protein"... 334 5.0e-46 2
GENEDB_PFALCIPARUM|MAL7P1.113 - symbol:MAL7P1.113 "DEAD b... 318 7.9e-46 4
UNIPROTKB|Q8IBN8 - symbol:MAL7P1.113 "DEAD box helicase, ... 318 7.9e-46 4
POMBASE|SPAC1093.05 - symbol:SPAC1093.05 "ATP-dependent R... 336 1.4e-45 2
SGD|S000003931 - symbol:DRS1 "Nucleolar DEAD-box protein ... 360 2.0e-45 2
UNIPROTKB|E9PIF2 - symbol:DDX10 "Probable ATP-dependent R... 325 2.7e-45 2
UNIPROTKB|Q13206 - symbol:DDX10 "Probable ATP-dependent R... 325 3.2e-45 2
UNIPROTKB|I3L976 - symbol:DDX47 "Uncharacterized protein"... 333 8.9e-45 2
UNIPROTKB|E2RC35 - symbol:DDX10 "Uncharacterized protein"... 327 9.6e-45 2
UNIPROTKB|Q08DT0 - symbol:DDX10 "Uncharacterized protein"... 326 1.1e-44 2
RGD|1308990 - symbol:Ddx10 "DEAD (Asp-Glu-Ala-Asp) box po... 325 1.1e-44 2
CGD|CAL0004182 - symbol:HCA4 species:5476 "Candida albica... 330 2.0e-44 2
MGI|MGI:1924841 - symbol:Ddx10 "DEAD (Asp-Glu-Ala-Asp) bo... 325 2.2e-44 2
UNIPROTKB|F1NA53 - symbol:DDX49 "Uncharacterized protein"... 308 1.8e-43 2
UNIPROTKB|F1NQV5 - symbol:DDX27 "Uncharacterized protein"... 347 2.0e-43 2
UNIPROTKB|Q48AV0 - symbol:CPS_0042 "ATP-dependent RNA hel... 320 2.5e-43 2
TIGR_CMR|CPS_0042 - symbol:CPS_0042 "ATP-dependent RNA he... 320 2.5e-43 2
ZFIN|ZDB-GENE-031001-8 - symbol:ddx27 "DEAD (Asp-Glu-Ala-... 343 3.1e-43 2
UNIPROTKB|Q8EBV7 - symbol:SO_3388 "ATP-dependent RNA heli... 331 3.4e-43 2
TIGR_CMR|SO_3388 - symbol:SO_3388 "ATP-dependent RNA heli... 331 3.4e-43 2
UNIPROTKB|Q9KNA4 - symbol:VC_A0061 "ATP-dependent RNA hel... 311 4.1e-43 2
TIGR_CMR|VC_A0061 - symbol:VC_A0061 "ATP-dependent RNA he... 311 4.1e-43 2
UNIPROTKB|F1P0I3 - symbol:DDX10 "Probable ATP-dependent R... 311 5.6e-43 2
UNIPROTKB|Q5ZJF6 - symbol:DDX10 "Probable ATP-dependent R... 311 5.6e-43 2
UNIPROTKB|Q3AFI3 - symbol:CHY_0229 "ATP-dependent RNA hel... 309 6.8e-43 2
TIGR_CMR|CHY_0229 - symbol:CHY_0229 "ATP-dependent RNA he... 309 6.8e-43 2
UNIPROTKB|Q9KLH6 - symbol:VC_A0768 "ATP-dependent RNA hel... 316 7.5e-43 2
TIGR_CMR|VC_A0768 - symbol:VC_A0768 "ATP-dependent RNA he... 316 7.5e-43 2
TAIR|locus:2010306 - symbol:EMB1586 "embryo defective 158... 363 1.3e-42 2
FB|FBgn0032919 - symbol:CG9253 species:7227 "Drosophila m... 313 1.7e-42 2
SGD|S000003570 - symbol:HCA4 "DEAD box RNA helicase" spec... 316 1.9e-42 2
MGI|MGI:2385884 - symbol:Ddx27 "DEAD (Asp-Glu-Ala-Asp) bo... 339 2.5e-42 2
UNIPROTKB|E1C187 - symbol:DDX27 "Uncharacterized protein"... 338 3.3e-42 2
TAIR|locus:2825324 - symbol:AT1G71370 species:3702 "Arabi... 271 4.6e-42 2
UNIPROTKB|Q8ECL2 - symbol:SO_3125 "ATP-dependent RNA heli... 317 6.4e-42 2
TIGR_CMR|SO_3125 - symbol:SO_3125 "ATP-dependent RNA heli... 317 6.4e-42 2
TIGR_CMR|CPS_1125 - symbol:CPS_1125 "ATP-dependent RNA he... 324 7.5e-42 2
ZFIN|ZDB-GENE-071022-2 - symbol:ddx10 "DEAD (Asp-Glu-Ala-... 314 9.1e-42 2
FB|FBgn0030855 - symbol:CG5800 species:7227 "Drosophila m... 318 1.3e-41 2
TAIR|locus:2130918 - symbol:AT4G16630 species:3702 "Arabi... 334 1.3e-41 2
TAIR|locus:2173517 - symbol:AT5G60990 species:3702 "Arabi... 307 1.4e-41 2
UNIPROTKB|F1Q073 - symbol:DDX27 "Uncharacterized protein"... 333 2.0e-41 2
UNIPROTKB|J9P9C6 - symbol:DDX27 "Uncharacterized protein"... 333 2.2e-41 2
UNIPROTKB|A1A4H6 - symbol:DDX27 "Probable ATP-dependent R... 331 3.5e-41 2
DICTYBASE|DDB_G0280147 - symbol:ddx47 "DEAD/DEAH box heli... 302 4.5e-41 2
SGD|S000001107 - symbol:RRP3 "Protein involved in rRNA pr... 301 9.1e-41 2
UNIPROTKB|Q96GQ7 - symbol:DDX27 "Probable ATP-dependent R... 329 9.8e-41 2
GENEDB_PFALCIPARUM|PFL2475w - symbol:PFL2475w "DEAD/DEAH ... 331 1.8e-40 2
UNIPROTKB|Q8I4R9 - symbol:PFL2475w "DEAD/DEAH box helicas... 331 1.8e-40 2
WARNING: Descriptions of 780 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2064844 [details] [associations]
symbol:AT2G40700 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0006312
"mitotic recombination" evidence=RCA] [GO:0006406 "mRNA export from
nucleus" evidence=RCA] [GO:0006606 "protein import into nucleus"
evidence=RCA] [GO:0006626 "protein targeting to mitochondrion"
evidence=RCA] [GO:0009560 "embryo sac egg cell differentiation"
evidence=RCA] [GO:0009561 "megagametogenesis" evidence=RCA]
[GO:0009640 "photomorphogenesis" evidence=RCA] [GO:0010388 "cullin
deneddylation" evidence=RCA] [GO:0042991 "transcription factor
import into nucleus" evidence=RCA] [GO:0051604 "protein maturation"
evidence=RCA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
InterPro:IPR025313 Pfam:PF13959 KO:K14806 HOGENOM:HOG000268799
EMBL:AJ010468 IPI:IPI00518934 PIR:G84832 PIR:T51746
RefSeq:NP_181602.1 UniGene:At.47 ProteinModelPortal:Q7XJN0
SMR:Q7XJN0 STRING:Q7XJN0 PaxDb:Q7XJN0 PRIDE:Q7XJN0
EnsemblPlants:AT2G40700.1 GeneID:818665 KEGG:ath:AT2G40700
GeneFarm:934 TAIR:At2g40700 InParanoid:Q7XJN0 OMA:HRFHWIV
PhylomeDB:Q7XJN0 ProtClustDB:CLSN2683635 Genevestigator:Q7XJN0
GermOnline:AT2G40700 Uniprot:Q7XJN0
Length = 609
Score = 1819 (645.4 bits), Expect = 1.3e-187, P = 1.3e-187
Identities = 345/495 (69%), Positives = 422/495 (85%)
Query: 14 IFASCSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAY 73
+FASCSFSSLGL + L DQL+ER+GFEAPT VQAQAIPVILSGR VLVNA TGTGKT+AY
Sbjct: 25 LFASCSFSSLGLDTKLSDQLKERMGFEAPTLVQAQAIPVILSGRDVLVNAPTGTGKTIAY 84
Query: 74 LAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGEN 133
LAP+I+HLQ +SP++DRS GTFALV+VPTRELCLQVYE L KLLHRFHWIVPGYVMGGE
Sbjct: 85 LAPLIHHLQGHSPKVDRSHGTFALVIVPTRELCLQVYETLEKLLHRFHWIVPGYVMGGEK 144
Query: 134 RSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEI 193
++KEKARLRKGISIL+ATPGRLLDHLK+T+SF+H NLRW+IFDEAD ILELG+GKEIE+I
Sbjct: 145 KAKEKARLRKGISILIATPGRLLDHLKNTASFVHKNLRWVIFDEADSILELGYGKEIEQI 204
Query: 194 LDILGSRNIGSIGEGNEV--SNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLP 251
+ +LGS GE +++ +++QNLLLSATLN+KVN LAK+SL+ PV+IGLD KL
Sbjct: 205 IKLLGSGQ-NEQGEEDDIVPKGIQKQNLLLSATLNDKVNDLAKLSLDDPVMIGLDNTKLQ 263
Query: 252 EDKSHVRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCGSRLAVLLSILK 311
++ S + +SD ++ V H + + +ED+ +P+QLVQRY++VPCG+RL LLS+LK
Sbjct: 264 QNLSIESPAAPDSDAEDMVIHVNKSANPLSEDYGIPSQLVQRYLRVPCGARLVALLSVLK 323
Query: 312 HLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDME-LKQLFLRCKTFRLHGNM 370
+LF+ E SQK+VVFFST DAVDFHYSLLSEFQW P+S+ + E K+LFL+CKTFRLHG+M
Sbjct: 324 NLFEREASQKVVVFFSTRDAVDFHYSLLSEFQWPPNSETEEEGTKELFLKCKTFRLHGSM 383
Query: 371 KQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRVGRTARL 430
+QEDRR+ FG FKTEK+A+LLSTDVAARGLDFPKV+CIIQYD GEATEYVHRVGRTAR+
Sbjct: 384 EQEDRRSAFGTFKTEKQAVLLSTDVAARGLDFPKVRCIIQYDCPGEATEYVHRVGRTARI 443
Query: 431 GERGDSLLFLQPVEMDYLQDLEKHGVSLTEYPLLKVLDSFPLYGQKPRVKKFLTTESHPW 490
GE+G++LLFLQP+E+DYL++L+KHG SLTEYPL+KVLD FP+ G PR+KK L+ ESHPW
Sbjct: 444 GEKGEALLFLQPIEIDYLKELKKHGASLTEYPLMKVLDKFPIPGNMPRIKKVLSLESHPW 503
Query: 491 ILSLQNALESFIIHE 505
++SLQ ALES E
Sbjct: 504 VISLQRALESLTYAE 518
>DICTYBASE|DDB_G0271708 [details] [associations]
symbol:ddx31 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0271708 GO:GO:0005524
GenomeReviews:CM000151_GR GO:GO:0003723 EMBL:AAFI02000006
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
InterPro:IPR025313 Pfam:PF13959 KO:K14806 HSSP:P10081
RefSeq:XP_645498.1 ProteinModelPortal:Q869P0
EnsemblProtists:DDB0234202 GeneID:8618126 KEGG:ddi:DDB_G0271708
OMA:THIQEAS Uniprot:Q869P0
Length = 908
Score = 627 (225.8 bits), Expect = 3.9e-90, Sum P(2) = 3.9e-90
Identities = 148/352 (42%), Positives = 206/352 (58%)
Query: 5 SKKKETVKEIFASCSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAA 64
S K E F+S ++ SL L TL L + E PT +Q +I IL G LV A
Sbjct: 194 SNIKVEKSETFSSMNWGSLQLSETLVRNLVGHMKHEKPTHIQEASITPILKGNDALVKAQ 253
Query: 65 TGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIV 124
TG+GKT++YL P++ L R+ RS G + +++ PTREL Q+YE L KLL F+WIV
Sbjct: 254 TGSGKTLSYLIPVVQKLTEQ--RVTRSDGCYCVIITPTRELSSQIYEELQKLLKPFYWIV 311
Query: 125 PGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILEL 184
PG +MGGENRS EKAR+RKGI+ILVATPGRLLDHL++T SF N++W I DEAD++L+L
Sbjct: 312 PGIIMGGENRSAEKARIRKGINILVATPGRLLDHLQNTQSFPTDNIKWCILDEADKLLDL 371
Query: 185 GFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIG 244
GF K++ I+++L S+ KRQN+L+SATL+E ++ LA +SL +PV IG
Sbjct: 372 GFEKDVTTIINLLDSKK--------RTMKFKRQNILVSATLSEGISRLASLSLTSPVYIG 423
Query: 245 LDEKKLPEDKSHVRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCGSRLA 304
LD K L E+ E+P E + P QL Q YV+V RL
Sbjct: 424 LDSKVL-----------------EKGENPFQAAEK--EMLQAPKQLDQFYVEVESKERLT 464
Query: 305 VLLSILKH-----LFD--------TEVSQKLVVFFSTCDAVDFHYSLLSEFQ 343
L++ ++ D + + K++VFFS+CD+VDFH+ + S +
Sbjct: 465 SLIAFIRWKTSNITIDKGDVASGNSSANSKMIVFFSSCDSVDFHHYMFSNMK 516
Score = 296 (109.3 bits), Expect = 3.9e-90, Sum P(2) = 3.9e-90
Identities = 65/160 (40%), Positives = 89/160 (55%)
Query: 348 SQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKC 407
S P+ +K F+LHG + Q+ R TF FK +LL+TDV+ARGLD P V
Sbjct: 591 SNPNYRVKTSVFSVPIFKLHGELDQQTRTKTFFDFKNSPNGILLTTDVSARGLDLPSVNW 650
Query: 408 IIQYDSAGEATEYVHRVGRTARLGERGDSLLFLQPVEMDYLQDLEKHGVSLTEYPLLKVL 467
I+QYD + +Y+HR+GRTARLG +G SLLFL P E Y+ L K VS+ E + +L
Sbjct: 651 IVQYDPCSDTKDYIHRIGRTARLGNQGCSLLFLLPSEKKYIDHLAKFNVSVKEMKVTTIL 710
Query: 468 DS--FPLYGQKPRVKKFLTTESHPWILSLQNALESFIIHE 505
S + GQ + K ES + LQ E F+I++
Sbjct: 711 QSLFYTSDGQLKKTSKSSQLESQ--VHDLQLLFERFLIYD 748
>RGD|1304895 [details] [associations]
symbol:Ddx31 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 31"
species:10116 "Rattus norvegicus" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 RGD:1304895
GO:GO:0005524 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
InterPro:IPR025313 Pfam:PF13959 GeneTree:ENSGT00550000075041
EMBL:CH474001 UniGene:Rn.63648 Ensembl:ENSRNOT00000064323
Uniprot:G3V9V8
Length = 682
Score = 553 (199.7 bits), Expect = 3.9e-89, Sum P(2) = 3.9e-89
Identities = 117/241 (48%), Positives = 158/241 (65%)
Query: 8 KETVKEIFASCSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGT 67
K+ +++F+ +F L LH L + L + T VQ Q+IPV+L GR LV + TG+
Sbjct: 93 KQAREQVFSPEAFQELDLHPHLISTINTVLKMSSMTSVQKQSIPVLLEGRDALVRSQTGS 152
Query: 68 GKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGY 127
GKT+AY P++ LQ+ + +I RS G +ALVLVPTREL LQ ++ + KLL F WIVPG
Sbjct: 153 GKTLAYCIPVVQSLQALTSKIQRSDGPYALVLVPTRELALQSFDTVQKLLKPFTWIVPGV 212
Query: 128 VMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFG 187
+MGGE R EKARLRKGI+IL++TPGRL+DH+K T + +RW++ DEADRIL+LGF
Sbjct: 213 LMGGEKRKSEKARLRKGINILISTPGRLVDHIKSTKNIHFNRVRWLVVDEADRILDLGFE 272
Query: 188 KEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDE 247
K++ IL+ + + E KRQN+LLSATL E V LA ISL PV I + +
Sbjct: 273 KDVTVILNAVNA----------ECQ--KRQNVLLSATLTEGVTRLADISLHNPVSISVLD 320
Query: 248 K 248
K
Sbjct: 321 K 321
Score = 356 (130.4 bits), Expect = 3.9e-89, Sum P(2) = 3.9e-89
Identities = 78/197 (39%), Positives = 106/197 (53%)
Query: 272 HPSTTMRSTTEDFKLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDA 331
+P + F +P L Q V VP RL L + + E QK++VFFS+C+
Sbjct: 327 NPKEVASIQLDSFAIPESLDQYVVLVPSKLRLVCLAAFILKKCKFEKDQKMIVFFSSCEL 386
Query: 332 VDFHYSLLSEFQWSPHSQPDME-LKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALL 390
V+FHY+L P E L K RLHGNMKQE+R + F F +L
Sbjct: 387 VEFHYNLFLHTLLCHSGTPASETLPSASWPLKFLRLHGNMKQEERTSVFHEFSHSGTGVL 446
Query: 391 LSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRVGRTARLGERGDSLLFLQPVEMDYLQD 450
L TDVA+RGLD P+V I+QY + EY+HR+GRTAR+G G SLL L P E +Y+
Sbjct: 447 LCTDVASRGLDLPQVTWIVQYSAPSAPAEYIHRIGRTARIGCHGSSLLILAPSEAEYVNS 506
Query: 451 LEKHGVSLTEYPLLKVL 467
L H ++++E L +L
Sbjct: 507 LASHKINVSEIKLEGIL 523
>ZFIN|ZDB-GENE-030131-3973 [details] [associations]
symbol:ddx31 "DEAD (Asp-Glu-Ala-Asp) box
polypeptide 31" species:7955 "Danio rerio" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-030131-3973 GO:GO:0005524 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
KO:K14806 HOGENOM:HOG000268799 GeneTree:ENSGT00550000075041
CTD:64794 HOVERGEN:HBG103793 OrthoDB:EOG42V8FK EMBL:BX276128
IPI:IPI00614096 RefSeq:XP_683832.1 UniGene:Dr.79241
Ensembl:ENSDART00000148314 GeneID:325248 KEGG:dre:325248
InParanoid:A2BFD2 NextBio:20809193 Uniprot:A2BFD2
Length = 739
Score = 543 (196.2 bits), Expect = 1.2e-87, Sum P(2) = 1.2e-87
Identities = 114/245 (46%), Positives = 162/245 (66%)
Query: 4 MSKKKETVKE-IFASCSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVN 62
+S VKE +F S +F L LH L L + L + T VQ Q IPV++SG+ +V
Sbjct: 139 LSPAVNQVKEKVFTSNTFEELNLHPHLVATLHKVLNVSSMTSVQKQTIPVLMSGKDAVVR 198
Query: 63 AATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHW 122
+ TG+GKT+AY P++ LQ+ P++ RS G A+V+VPTREL LQ +++ KLL F W
Sbjct: 199 SQTGSGKTLAYGIPMVQFLQAIQPKVKRSDGPLAVVIVPTRELALQSFQMFQKLLRPFTW 258
Query: 123 IVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRIL 182
IVPG +MGGE + EKARLRKGI++L++TPGRL+DH+K+T S + +RW+I DEADRIL
Sbjct: 259 IVPGVLMGGEKKKAEKARLRKGINVLISTPGRLVDHIKNTLSIAFSAVRWLILDEADRIL 318
Query: 183 ELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVL 242
+LGF K++ IL+ L + G + RQN+LLSAT+ E ++ LA IS++ PV
Sbjct: 319 DLGFEKDLTVILNALNAA-------GPD-----RQNVLLSATITEGLSRLASISMKDPVS 366
Query: 243 IGLDE 247
+ + E
Sbjct: 367 VHVSE 371
Score = 352 (129.0 bits), Expect = 1.2e-87, Sum P(2) = 1.2e-87
Identities = 85/216 (39%), Positives = 119/216 (55%)
Query: 256 HVRFGSLESDVKEEVEH-PSTTMRSTTEDFKLPAQLVQRYVKVPCGSRLAVLLSILKHLF 314
HV GS +E VE P ++ ++ + +P +L Q V VP L L + +
Sbjct: 368 HVSEGS-----EETVEACPQAAPQALSDSYAVPERLQQHVVVVPSKLHLVCLAAFILAKC 422
Query: 315 DTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTF-RLHGNMKQE 373
E QKL++F S+C+AV+F +L + S + C F RLHGNM+QE
Sbjct: 423 KFEQRQKLIIFISSCEAVEFLLNLFTAVLCEIPSNTSSKSTS----CLNFYRLHGNMRQE 478
Query: 374 DRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRVGRTARLGER 433
+R F F K +LL TDVAARGLD P+V I+QY+ A EYVHRVGRTAR+G +
Sbjct: 479 ERTEVFQEFSQCKTGILLCTDVAARGLDLPQVTWIVQYNPPVSAAEYVHRVGRTARIGAQ 538
Query: 434 GDSLLFLQPVEMDYLQDLEKHGVSLTEYPLLKVLDS 469
G SLLFL P E ++ L H +SL+E ++ +L +
Sbjct: 539 GSSLLFLTPSETAFVDVLANHNISLSEMKMVDILST 574
>FB|FBgn0027602 [details] [associations]
symbol:CG8611 species:7227 "Drosophila melanogaster"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:AE014298
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
InterPro:IPR025313 Pfam:PF13959 KO:K14806
GeneTree:ENSGT00550000075041 EMBL:AF145609 RefSeq:NP_573214.1
RefSeq:NP_788922.1 UniGene:Dm.3172 ProteinModelPortal:Q86B47
SMR:Q86B47 IntAct:Q86B47 MINT:MINT-776497 PaxDb:Q86B47 PRIDE:Q86B47
EnsemblMetazoa:FBtr0074440 GeneID:32725 KEGG:dme:Dmel_CG8611
UCSC:CG8611-RB FlyBase:FBgn0027602 InParanoid:Q86B47 OMA:YTERDPE
OrthoDB:EOG47SQVT PhylomeDB:Q86B47 GenomeRNAi:32725 NextBio:780053
Bgee:Q86B47 Uniprot:Q86B47
Length = 975
Score = 811 (290.5 bits), Expect = 8.5e-81, P = 8.5e-81
Identities = 193/515 (37%), Positives = 287/515 (55%)
Query: 11 VKE-IFASCSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGK 69
VKE IF S+LGLH L + L T VQ + IP +L G+ VLV + TG+GK
Sbjct: 319 VKETIFTGSKISTLGLHPHAVKNLEDLLSIRELTSVQQKTIPEVLQGKDVLVRSQTGSGK 378
Query: 70 TVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVM 129
T+AY P++ LQ PRI R G ALV+VPTREL +Q YE++ KL+ + WIVPG ++
Sbjct: 379 TLAYALPLVELLQKQQPRIQRKDGVLALVIVPTRELVMQTYELIQKLVKPYTWIVPGSLL 438
Query: 130 GGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKE 189
GGE+R EKARLRKGI+IL+ TPGRL+DHL HT+SF T L+++I DEADR+LELG+ ++
Sbjct: 439 GGESRKSEKARLRKGINILIGTPGRLVDHLLHTASFKLTKLQFLILDEADRLLELGYERD 498
Query: 190 IEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLI-GLDEK 248
++++++ + + E E+ ++R +LLSATL +V LA ++L+ P+ I DE
Sbjct: 499 VKQLVEAIDKQRAEC--EDKELPQLQR--MLLSATLTSQVQQLAGLTLKNPLYIDNSDEA 554
Query: 249 KLPEDKSHVRFGSLESDVKEEVEHP-STTMRSTTEDFKLPAQLVQRYVKVPCGSRLAVLL 307
KS + + EV+ T +P L YV VP RL L
Sbjct: 555 ASAALKSKDGYQKETIEALLEVDDGLGEYQEDVTGVLSIPENLQLSYVVVPPKLRLVALS 614
Query: 308 SILKHLFDTEVSQ-KLVVFFSTCDAVDFHYSLLSEF-----------QWSPHSQPDMELK 355
S+L D Q K +VF ST + V+FH+ +L+E Q S D ++
Sbjct: 615 SLLAKEVDASPKQFKAIVFMSTTEMVNFHHDMLNEALTRRVLDEEDEQEKGDSDDDGDIP 674
Query: 356 QLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAG 415
L + F+LHG+M Q +R+ F F+ +LL+TDV RG+D P +K ++QY
Sbjct: 675 -LLQGLRFFKLHGSMTQTERQGVFRGFRDCASCVLLATDVVGRGIDVPDIKLVVQYTPPQ 733
Query: 416 EATEYVHRVGRTARLGERGDSLLFLQPVEMDYLQDLEKHGVSLTEYPLLKVLDSF-PLYG 474
++VHRVGRTAR G +G ++LFL P E +++ LEK + + + + L + P
Sbjct: 734 TTADFVHRVGRTARAGRKGRAVLFLTPSEAQFVRHLEKKRIRIQQGDMYAYLQTLLPKDD 793
Query: 475 QKPRVKKFLTTESHPWILSLQNALESFIIHEILSC 509
+ V++ + H + L++ E +H+ SC
Sbjct: 794 EARTVQEAASNLQHKFQTLLEDDRE---LHD-KSC 824
>ASPGD|ASPL0000044206 [details] [associations]
symbol:AN1949 species:162425 "Emericella nidulans"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0030686 "90S
preribosome" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0005635 "nuclear envelope" evidence=IEA] [GO:0030687
"preribosome, large subunit precursor" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005730 EMBL:BN001307
GO:GO:0003723 EMBL:AACD01000029 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
HOGENOM:HOG000268799 KO:K13179 OMA:KDGYRSY RefSeq:XP_659553.1
ProteinModelPortal:Q5BBY1 STRING:Q5BBY1
EnsemblFungi:CADANIAT00008609 GeneID:2875602 KEGG:ani:AN1949.2
OrthoDB:EOG4ZKNVS Uniprot:Q5BBY1
Length = 609
Score = 419 (152.6 bits), Expect = 5.2e-69, Sum P(3) = 5.2e-69
Identities = 99/231 (42%), Positives = 140/231 (60%)
Query: 20 FSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIIN 79
F+ LGL ++E +GFE T++Q + IP +L+GR VL A TG+GKT+A+L P I
Sbjct: 130 FTELGLSEKTLQGIKE-MGFETMTEIQQRTIPPLLAGRDVLGAAKTGSGKTLAFLIPAIE 188
Query: 80 HLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKA 139
L + R +GT +V+ PTREL LQ++ + +LL H G V+GG NR E
Sbjct: 189 MLSAL--RFKPRNGTGVIVVSPTRELALQIFGVARELLTA-HSQTYGIVIGGANRRAEAE 245
Query: 140 RLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILGS 199
+L KG+++L+ATPGRLLDHL++T F+ NL+ ++ DEADRILE+GF E+ +I+ IL
Sbjct: 246 KLTKGVNLLIATPGRLLDHLQNTPGFVFKNLKTLVIDEADRILEVGFEDEMRQIIKIL-- 303
Query: 200 RNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLET-PVLIGLDEKK 249
N RQ +L SAT KV LA+ISL P+ I +D +K
Sbjct: 304 ------------PNEDRQTMLFSATQTTKVEDLARISLRPGPLYINVDHRK 342
Score = 233 (87.1 bits), Expect = 5.2e-69, Sum P(3) = 5.2e-69
Identities = 50/106 (47%), Positives = 69/106 (65%)
Query: 366 LHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRVG 425
LHG KQ+ R TF F K+ +L+ TDVAARGLD P V IIQ+D + +Y+HRVG
Sbjct: 405 LHGKQKQQKRTNTFFEFCNAKQGVLICTDVAARGLDIPAVDWIIQFDPPDDTRDYIHRVG 464
Query: 426 RTAR-LGERGDSLLFLQPVEMDYLQDLEKHGVSLTEY--PLLKVLD 468
RTAR RG SL+FLQP E+ +L+ L++ V + E+ P K+++
Sbjct: 465 RTARGANGRGRSLMFLQPSEVGFLKYLKEARVPVVEFDFPAKKIVN 510
Score = 81 (33.6 bits), Expect = 5.2e-69, Sum P(3) = 5.2e-69
Identities = 19/51 (37%), Positives = 28/51 (54%)
Query: 290 LVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLS 340
L Q YV R +L S LK + +K++VFFS+C+ V +H LL+
Sbjct: 350 LEQGYVICEADKRFLLLFSFLKR----NLKKKIIVFFSSCNCVKYHAELLN 396
>DICTYBASE|DDB_G0282741 [details] [associations]
symbol:ddx18 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0042254 "ribosome biogenesis"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0006364 "rRNA processing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0282741 GO:GO:0005524
GO:GO:0005730 EMBL:AAFI02000047 GenomeReviews:CM000152_GR
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HSSP:Q58083 InterPro:IPR025313 Pfam:PF13959
RefSeq:XP_640236.1 ProteinModelPortal:Q54S03 STRING:Q54S03
EnsemblProtists:DDB0234194 GeneID:8623775 KEGG:ddi:DDB_G0282741
KO:K13179 OMA:KDGYRSY Uniprot:Q54S03
Length = 602
Score = 408 (148.7 bits), Expect = 2.8e-68, Sum P(3) = 2.8e-68
Identities = 94/236 (39%), Positives = 148/236 (62%)
Query: 17 SCSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAP 76
S FS+L + + E +GF+ T +QA++I +L G+ +L A TG+GKT+A+L P
Sbjct: 118 SIEFSNLPIEENTKKSIEE-MGFKKMTPIQAKSILPLLEGKDLLGAARTGSGKTLAFLIP 176
Query: 77 IINHL--QSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENR 134
I L ++ PR +GT +++ PTREL LQ+Y + +L+ ++H G V+GG ++
Sbjct: 177 AIEVLVKSNFKPR----NGTGVIIISPTRELALQIYGVARELM-KYHTQTHGIVIGGASK 231
Query: 135 SKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEIL 194
E+ RL KG+++LVATPGRLLDHL++T F+ NL+ +I DEADRILE+GF +E+ +I+
Sbjct: 232 KPEEERLEKGVNLLVATPGRLLDHLQNTKGFITKNLKCLIIDEADRILEVGFEEEMHQII 291
Query: 195 DILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLE-TPVLIGLDEKK 249
+V RQ +L SAT KV+ +AK+SL +PV +G+D+++
Sbjct: 292 --------------KKVPKT-RQTMLFSATQTRKVDDIAKVSLNNSPVYVGVDDER 332
Score = 246 (91.7 bits), Expect = 2.8e-68, Sum P(3) = 2.8e-68
Identities = 52/109 (47%), Positives = 68/109 (62%)
Query: 358 FLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEA 417
++ LHG KQ+ R TF F +K +L+ TDVAARGLD P V IIQYD +
Sbjct: 387 YIDIPVLELHGRQKQQKRTNTFYEFVNAEKGILICTDVAARGLDIPSVDWIIQYDPPDDP 446
Query: 418 TEYVHRVGRTAR-LGERGDSLLFLQPVEMDYLQDLEKHGVSLTEYPLLK 465
EY+HRVGRTAR +G++G +LLFL P E+ +L+ L+ V L EY K
Sbjct: 447 KEYIHRVGRTARGVGKKGRALLFLLPKELGFLKYLKLAKVPLNEYEFPK 495
Score = 74 (31.1 bits), Expect = 2.8e-68, Sum P(3) = 2.8e-68
Identities = 19/51 (37%), Positives = 29/51 (56%)
Query: 290 LVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLS 340
L Q YV P R +L + LK +S+K++VF S+C+AV + LL+
Sbjct: 340 LEQGYVVCPSERRFLLLYTFLKK----NLSKKIIVFLSSCNAVKYTAELLN 386
>TAIR|locus:2152099 [details] [associations]
symbol:AT5G65900 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:CP002688 GenomeReviews:BA000015_GR
EMBL:AL021684 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
HOGENOM:HOG000268799 KO:K13179 EMBL:AB018108 EMBL:AY059930
EMBL:BT001188 EMBL:AJ012745 IPI:IPI00526354 PIR:T05883 PIR:T51352
RefSeq:NP_201391.1 UniGene:At.19658 UniGene:At.66704
ProteinModelPortal:Q9SB89 SMR:Q9SB89 PaxDb:Q9SB89 PRIDE:Q9SB89
EnsemblPlants:AT5G65900.1 GeneID:836719 KEGG:ath:AT5G65900
GeneFarm:951 TAIR:At5g65900 InParanoid:Q9SB89 OMA:HLENTNG
PhylomeDB:Q9SB89 ProtClustDB:CLSN2916378 Genevestigator:Q9SB89
GermOnline:AT5G65900 Uniprot:Q9SB89
Length = 633
Score = 422 (153.6 bits), Expect = 4.7e-67, Sum P(3) = 4.7e-67
Identities = 100/245 (40%), Positives = 147/245 (60%)
Query: 3 KMSKKKETVKEIFASCSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVN 62
K +KK I + +F SL L ++E +GF T++QA+AIP ++ G VL
Sbjct: 139 KEEEKKLEETSIMTNKTFESLSLSDNTYKSIKE-MGFARMTQIQAKAIPPLMMGEDVLGA 197
Query: 63 AATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHW 122
A TG+GKT+A+L P + L Y + +GT LV+ PTREL +Q Y + +LL ++H
Sbjct: 198 ARTGSGKTLAFLIPAVELL--YRVKFTPRNGTGVLVICPTRELAIQSYGVAKELL-KYHS 254
Query: 123 IVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRIL 182
G V+GGE R E L KG+++LVATPGRLLDHL++T+ F+ NL++++ DEADRIL
Sbjct: 255 QTVGKVIGGEKRKTEAEILAKGVNLLVATPGRLLDHLENTNGFIFKNLKFLVMDEADRIL 314
Query: 183 ELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVL 242
E F +++++IL++L RQ L SAT + KV LA++SL +PV
Sbjct: 315 EQNFEEDLKKILNLLPKT---------------RQTSLFSATQSAKVEDLARVSLTSPVY 359
Query: 243 IGLDE 247
I +DE
Sbjct: 360 IDVDE 364
Score = 210 (79.0 bits), Expect = 4.7e-67, Sum P(3) = 4.7e-67
Identities = 52/146 (35%), Positives = 81/146 (55%)
Query: 358 FLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEA 417
+++ + G + Q R TF F + +LL T+VAARGLDFP V I+QYD
Sbjct: 422 YIKFDCLEIRGGIDQNKRTPTFLQFIKAETGILLCTNVAARGLDFPHVDWIVQYDPPDNP 481
Query: 418 TEYVHRVGRTAR-LGERGDSLLFLQPVEMDYLQDLEKHGVSLTEYPLLKVLDSFPLYGQK 476
T+Y+HRVGRTAR G +G +LL L P E+ ++Q L+ + + E+ + L K
Sbjct: 482 TDYIHRVGRTARGEGAKGKALLVLTPQELKFIQYLKAAKIPVEEHEF----EEKKLLDVK 537
Query: 477 PRVKKFLTTESHPWILSLQNALESFI 502
P V+ L +E++ S + A +++I
Sbjct: 538 PFVEN-LISENYALKESAKEAYKTYI 562
Score = 87 (35.7 bits), Expect = 4.7e-67, Sum P(3) = 4.7e-67
Identities = 21/49 (42%), Positives = 27/49 (55%)
Query: 290 LVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSL 338
L Q Y VP RL LL+ LK + +K++VFFSTC + FH L
Sbjct: 374 LEQGYCVVPSAMRLLFLLTFLKRF---QGKKKIMVFFSTCKSTKFHAEL 419
>UNIPROTKB|E2RFA3 [details] [associations]
symbol:DDX18 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313
Pfam:PF13959 KO:K13179 OMA:KDGYRSY GeneTree:ENSGT00680000100037
CTD:8886 EMBL:AAEX03011884 RefSeq:XP_533327.3
Ensembl:ENSCAFT00000007958 GeneID:476120 KEGG:cfa:476120
Uniprot:E2RFA3
Length = 669
Score = 405 (147.6 bits), Expect = 5.4e-67, Sum P(3) = 5.4e-67
Identities = 95/240 (39%), Positives = 149/240 (62%)
Query: 15 FASCSFSSLG--LHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVA 72
F SF+SL ++ ++E +GF T++Q ++I +L GR +L A TG+GKT+A
Sbjct: 173 FEDTSFASLSSLVNENTLKAIKE-MGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLA 231
Query: 73 YLAPIINHLQS--YSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMG 130
+L P + + + PR +GT L+L PTREL +Q + +L +L+ +H G +MG
Sbjct: 232 FLIPAVELIVKLKFMPR----NGTGVLILSPTRELAMQTFGVLKELM-MYHVHTYGLIMG 286
Query: 131 GENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEI 190
G NRS E +L GI+I+VATPGRLLDH+++T F++ NL+ ++ DEADRIL++GF +E+
Sbjct: 287 GSNRSAEAQKLGNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEEL 346
Query: 191 EEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLET-PVLIGLDEKK 249
++I+ +L +R RQ +L SAT KV LA+ISL+ P+ +G+D+ K
Sbjct: 347 KQIIKLLPTR---------------RQTMLFSATQTRKVEDLARISLKKEPLYVGVDDDK 391
Score = 234 (87.4 bits), Expect = 5.4e-67, Sum P(3) = 5.4e-67
Identities = 49/97 (50%), Positives = 63/97 (64%)
Query: 366 LHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRVG 425
+HG KQ R TTF F +LL TDVAARGLD P+V I+QYD + EY+HRVG
Sbjct: 454 IHGRQKQNKRTTTFFQFCNADSGILLCTDVAARGLDIPEVDWIVQYDPPDDPKEYIHRVG 513
Query: 426 RTAR-LGERGDSLLFLQPVEMDYLQDLEKHGVSLTEY 461
RTAR L RG +LL L P E+ +L+ L++ V L+E+
Sbjct: 514 RTARGLNGRGHALLILHPEELGFLRYLKQSKVPLSEF 550
Score = 88 (36.0 bits), Expect = 5.4e-67, Sum P(3) = 5.4e-67
Identities = 21/51 (41%), Positives = 29/51 (56%)
Query: 290 LVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLS 340
L Q YV P R +L + LK +KL+VFFS+C +V +HY LL+
Sbjct: 399 LEQGYVVCPSEKRFLLLFTFLKK----NRKKKLMVFFSSCKSVKYHYELLN 445
Score = 39 (18.8 bits), Expect = 1.3e-46, Sum P(3) = 1.3e-46
Identities = 16/65 (24%), Positives = 30/65 (46%)
Query: 341 EFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGL 400
EF WS S +L++L K + LH + QE ++ A+ + + + + L
Sbjct: 551 EFSWSKISDIQSQLEKLIE--KNYFLHKSA-QEAYKSYIRAYDSHSLKQIFNVN----NL 603
Query: 401 DFPKV 405
+ P+V
Sbjct: 604 NLPQV 608
>MGI|MGI:1914192 [details] [associations]
symbol:Ddx18 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 18"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005730 "nucleolus"
evidence=ISO] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
[GO:0016787 "hydrolase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:1914192
GO:GO:0005524 GO:GO:0005730 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
HOGENOM:HOG000268799 KO:K13179 OMA:KDGYRSY
GeneTree:ENSGT00680000100037 CTD:8886 HOVERGEN:HBG105702
OrthoDB:EOG4894MF EMBL:AK075864 EMBL:AK019845 EMBL:BC028246
EMBL:BC103776 IPI:IPI00459381 RefSeq:NP_080136.2 UniGene:Mm.44219
ProteinModelPortal:Q8K363 SMR:Q8K363 STRING:Q8K363
PhosphoSite:Q8K363 PaxDb:Q8K363 PRIDE:Q8K363
Ensembl:ENSMUST00000001724 GeneID:66942 KEGG:mmu:66942
InParanoid:Q8K363 NextBio:323084 Bgee:Q8K363 CleanEx:MM_DDX18
Genevestigator:Q8K363 GermOnline:ENSMUSG00000001674 Uniprot:Q8K363
Length = 660
Score = 411 (149.7 bits), Expect = 5.4e-67, Sum P(3) = 5.4e-67
Identities = 98/240 (40%), Positives = 150/240 (62%)
Query: 15 FASCSFSSLG-LHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAY 73
F SF+SL L + + E +GF+ T++Q ++I +L GR +L A TG+GKT+A+
Sbjct: 164 FEDTSFASLSNLVNENTLKAIEEMGFKRMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAF 223
Query: 74 LAPIINHLQS--YSPRIDRSSGTFALVLVPTRELCLQVYEILHKLL-HRFHWIVPGYVMG 130
L P+I + + PR +GT L+L PTREL +Q + +L +L+ H H G +MG
Sbjct: 224 LIPVIELIVKLKFMPR----NGTGVLILSPTRELAMQTFGVLKELMTHHVHTY--GLIMG 277
Query: 131 GENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEI 190
G NRS E +L GI+I+VATPGRLLDH+++T F++ NL+ ++ DEADRIL++GF +E+
Sbjct: 278 GSNRSAEVQKLLNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEEL 337
Query: 191 EEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLET-PVLIGLDEKK 249
++I+ +L +R RQ +L SAT KV LA+ISL+ P+ +G+D+ K
Sbjct: 338 KQIIKLLPAR---------------RQTMLFSATQTRKVEDLARISLKKEPLYVGVDDDK 382
Score = 231 (86.4 bits), Expect = 5.4e-67, Sum P(3) = 5.4e-67
Identities = 48/97 (49%), Positives = 63/97 (64%)
Query: 366 LHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRVG 425
+HG KQ R TTF F +LL TDVAARGLD P+V I+QYD + EY+HRVG
Sbjct: 445 IHGKQKQNKRTTTFFQFCNADSGILLCTDVAARGLDIPEVDWIVQYDPPDDPKEYIHRVG 504
Query: 426 RTAR-LGERGDSLLFLQPVEMDYLQDLEKHGVSLTEY 461
RTAR L RG +LL L+P E+ +L+ L++ V L ++
Sbjct: 505 RTARGLNGRGHALLILRPEELGFLRYLKQSKVPLNQF 541
Score = 83 (34.3 bits), Expect = 5.4e-67, Sum P(3) = 5.4e-67
Identities = 20/51 (39%), Positives = 29/51 (56%)
Query: 290 LVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLS 340
L Q YV P R +L + LK +K++VFFS+C +V +HY LL+
Sbjct: 390 LEQGYVVCPSEKRFLLLFTFLKK----NRKKKVMVFFSSCMSVKYHYELLN 436
>UNIPROTKB|I3L840 [details] [associations]
symbol:DDX18 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
GeneTree:ENSGT00680000100037 EMBL:CU406995
Ensembl:ENSSSCT00000025310 Uniprot:I3L840
Length = 667
Score = 402 (146.6 bits), Expect = 9.1e-67, Sum P(3) = 9.1e-67
Identities = 96/241 (39%), Positives = 149/241 (61%)
Query: 15 FASCSFSSLG--LHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVA 72
F SF+SL ++ ++E +GF T++Q ++I +L GR +L A TG+GKT+A
Sbjct: 171 FEDTSFASLTDLVNENTLRAIKE-MGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLA 229
Query: 73 YLAPIINHLQS--YSPRIDRSSGTFALVLVPTRELCLQVYEILHKLL-HRFHWIVPGYVM 129
+L P + + + PR +GT L+L PTREL +Q + +L +L+ H H G +M
Sbjct: 230 FLIPAVELIVKLRFMPR----NGTGVLILSPTRELAMQTFGVLKELMTHHVHTY--GLIM 283
Query: 130 GGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKE 189
GG NRS E +L GI+I+VATPGRLLDH+++T F++ NL+ ++ DEADRIL++GF +E
Sbjct: 284 GGSNRSAEAQKLANGINIVVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEE 343
Query: 190 IEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLET-PVLIGLDEK 248
+++I+ +L +R RQ +L SAT KV LA+ISL+ P+ +G+D+
Sbjct: 344 LKQIIKLLPTR---------------RQTMLFSATQTRKVEDLARISLKKEPLYVGVDDD 388
Query: 249 K 249
K
Sbjct: 389 K 389
Score = 235 (87.8 bits), Expect = 9.1e-67, Sum P(3) = 9.1e-67
Identities = 49/97 (50%), Positives = 64/97 (65%)
Query: 366 LHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRVG 425
+HG KQ R TTF F +LL TDVAARGLD P+V I+QYD + EY+HRVG
Sbjct: 452 IHGRQKQNKRTTTFFQFCNADSGILLCTDVAARGLDIPEVDWIVQYDPPDDPKEYIHRVG 511
Query: 426 RTAR-LGERGDSLLFLQPVEMDYLQDLEKHGVSLTEY 461
RTAR L RG +LL L+P E+ +L+ L++ V L+E+
Sbjct: 512 RTARGLNGRGHALLILRPEELGFLRYLKQSKVPLSEF 548
Score = 88 (36.0 bits), Expect = 9.1e-67, Sum P(3) = 9.1e-67
Identities = 21/51 (41%), Positives = 29/51 (56%)
Query: 290 LVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLS 340
L Q YV P R +L + LK +KL+VFFS+C +V +HY LL+
Sbjct: 397 LEQGYVVCPSEKRFLLLFTFLKK----NRKKKLMVFFSSCKSVKYHYELLN 443
Score = 39 (18.8 bits), Expect = 2.8e-46, Sum P(3) = 2.8e-46
Identities = 16/65 (24%), Positives = 30/65 (46%)
Query: 341 EFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGL 400
EF WS S +L++L K + LH + QE ++ A+ + + + + L
Sbjct: 549 EFSWSKISDIQSQLEKLIE--KNYFLHKSA-QEAYKSYIRAYDSHSLKQIFNVN----NL 601
Query: 401 DFPKV 405
+ P+V
Sbjct: 602 NLPQV 606
>UNIPROTKB|F1NEQ3 [details] [associations]
symbol:DDX18 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005730 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
OMA:KDGYRSY GeneTree:ENSGT00680000100037 EMBL:AADN02016926
IPI:IPI00598837 Ensembl:ENSGALT00000019841 Uniprot:F1NEQ3
Length = 659
Score = 414 (150.8 bits), Expect = 9.6e-67, Sum P(3) = 9.6e-67
Identities = 99/238 (41%), Positives = 146/238 (61%)
Query: 15 FASCSFSSL-GLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAY 73
F SF+SL GL S + +GF T++Q ++I +L GR +L A TG+GKT+A+
Sbjct: 161 FEDNSFTSLAGLVSENTLKGISDMGFTHMTEIQHKSIKPLLEGRDILAAAKTGSGKTLAF 220
Query: 74 LAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLL-HRFHWIVPGYVMGGE 132
L P + + Y + +GT ++L PTREL +Q Y +L +L+ H H G +MGG
Sbjct: 221 LIPAVELI--YKLKFMPRNGTGVIILSPTRELAMQTYGVLKELMNHHVHTY--GLIMGGS 276
Query: 133 NRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEE 192
NRS E +L GI+I+VATPGRLLDH+++T F++ NL+ ++ DEADRILE+GF +E+++
Sbjct: 277 NRSAEAQKLGNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILEVGFEEEMKQ 336
Query: 193 ILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLET-PVLIGLDEKK 249
I+ +L R RQ +L SAT KV LAKISL+ P+ +G+D+ K
Sbjct: 337 IIKLLPKR---------------RQTMLFSATQTRKVEDLAKISLKKEPLYVGVDDNK 379
Score = 222 (83.2 bits), Expect = 9.6e-67, Sum P(3) = 9.6e-67
Identities = 48/99 (48%), Positives = 65/99 (65%)
Query: 366 LHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEAT--EYVHR 423
+HG KQ R TTF F + +LL TDVAARGLD P+V I+QYD + EY+HR
Sbjct: 442 IHGKQKQTKRTTTFFQFCNAESGILLCTDVAARGLDIPEVDWIVQYDPPDDPKQKEYIHR 501
Query: 424 VGRTAR-LGERGDSLLFLQPVEMDYLQDLEKHGVSLTEY 461
VGRTAR + RG +LL L+P E+ +L+ L++ V L+E+
Sbjct: 502 VGRTARGINGRGHALLILRPEELGFLRYLKQARVPLSEF 540
Score = 86 (35.3 bits), Expect = 9.6e-67, Sum P(3) = 9.6e-67
Identities = 21/51 (41%), Positives = 29/51 (56%)
Query: 290 LVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLS 340
L Q YV P R +L + LK +KL+VFFS+C +V +HY LL+
Sbjct: 387 LEQGYVVCPSEKRFLLLFTFLKK----NRKKKLMVFFSSCMSVKYHYELLN 433
Score = 38 (18.4 bits), Expect = 1.7e-47, Sum P(3) = 1.7e-47
Identities = 10/32 (31%), Positives = 17/32 (53%)
Query: 341 EFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQ 372
EF WS S +L++L K + LH + ++
Sbjct: 541 EFSWSKISDIQSQLEKLIE--KNYFLHKSAQE 570
>UNIPROTKB|F1N533 [details] [associations]
symbol:DDX18 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
GeneTree:ENSGT00680000100037 EMBL:DAAA02005160 IPI:IPI00904747
Ensembl:ENSBTAT00000045489 OMA:TENKGES Uniprot:F1N533
Length = 670
Score = 402 (146.6 bits), Expect = 9.8e-67, Sum P(3) = 9.8e-67
Identities = 96/241 (39%), Positives = 148/241 (61%)
Query: 15 FASCSFSSLG--LHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVA 72
F SF SL ++ ++E +GF T++Q ++I +L GR +L A TG+GKT+A
Sbjct: 174 FEDTSFDSLTNLVNENTLKAIKE-MGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLA 232
Query: 73 YLAPIINHLQS--YSPRIDRSSGTFALVLVPTRELCLQVYEILHKLL-HRFHWIVPGYVM 129
+L P + + + PR +GT L+L PTREL +Q + +L +L+ H H G +M
Sbjct: 233 FLIPAVELIVKLKFMPR----NGTGVLILSPTRELAMQTFGVLKELMTHHVHTY--GLIM 286
Query: 130 GGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKE 189
GG NRS E +L GI+I+VATPGRLLDH+++T F++ NL+ ++ DEADRIL++GF +E
Sbjct: 287 GGSNRSAEAQKLANGINIVVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEE 346
Query: 190 IEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLET-PVLIGLDEK 248
+++I+ +L +R RQ +L SAT KV LA+ISL+ P+ +G+D+
Sbjct: 347 LKQIIKLLPTR---------------RQTMLFSATQTRKVEDLARISLKKEPLYVGVDDD 391
Query: 249 K 249
K
Sbjct: 392 K 392
Score = 235 (87.8 bits), Expect = 9.8e-67, Sum P(3) = 9.8e-67
Identities = 49/97 (50%), Positives = 64/97 (65%)
Query: 366 LHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRVG 425
+HG KQ R TTF F +LL TDVAARGLD P+V I+QYD + EY+HRVG
Sbjct: 455 IHGRQKQNKRTTTFFQFCNADSGILLCTDVAARGLDIPEVDWIVQYDPPDDPKEYIHRVG 514
Query: 426 RTAR-LGERGDSLLFLQPVEMDYLQDLEKHGVSLTEY 461
RTAR L RG +LL L+P E+ +L+ L++ V L+E+
Sbjct: 515 RTARGLNGRGHALLILRPEELGFLRYLKQSKVPLSEF 551
Score = 88 (36.0 bits), Expect = 9.8e-67, Sum P(3) = 9.8e-67
Identities = 21/51 (41%), Positives = 29/51 (56%)
Query: 290 LVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLS 340
L Q YV P R +L + LK +KL+VFFS+C +V +HY LL+
Sbjct: 400 LEQGYVVCPSEKRFLLLFTFLKK----NRKKKLMVFFSSCKSVKYHYELLN 446
Score = 39 (18.8 bits), Expect = 3.1e-46, Sum P(3) = 3.1e-46
Identities = 16/65 (24%), Positives = 30/65 (46%)
Query: 341 EFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGL 400
EF WS S +L++L K + LH + QE ++ A+ + + + + L
Sbjct: 552 EFSWSKISDIQSQLEKLIE--KNYFLHKSA-QEAYKSYIRAYDSHSLKQIFNVN----NL 604
Query: 401 DFPKV 405
+ P+V
Sbjct: 605 NLPQV 609
>UNIPROTKB|D4A824 [details] [associations]
symbol:Ddx18 "Protein Ddx18" species:10116 "Rattus
norvegicus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 RGD:1549712 GO:GO:0005524 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
EMBL:AC128353 IPI:IPI00393022 Ensembl:ENSRNOT00000028172
ArrayExpress:D4A824 Uniprot:D4A824
Length = 662
Score = 409 (149.0 bits), Expect = 1.0e-66, Sum P(3) = 1.0e-66
Identities = 98/240 (40%), Positives = 150/240 (62%)
Query: 15 FASCSFSSLG-LHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAY 73
F SF+SL L + + E +GF+ T++Q ++I +L GR +L A TG+GKT+A+
Sbjct: 166 FEDTSFASLSNLVNENTLKAIEEMGFKHMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAF 225
Query: 74 LAPIINHLQS--YSPRIDRSSGTFALVLVPTRELCLQVYEILHKLL-HRFHWIVPGYVMG 130
L P+I + + PR +GT L+L PTREL +Q + +L +L+ H H G +MG
Sbjct: 226 LIPVIELIVKLKFMPR----NGTGVLILSPTRELAMQTFGVLKELMTHHVHTY--GLIMG 279
Query: 131 GENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEI 190
G NRS E +L GI+I+VATPGRLLDH+++T F++ NL+ ++ DEADRIL++GF +E+
Sbjct: 280 GSNRSAEVQKLLNGINIVVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEEL 339
Query: 191 EEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLET-PVLIGLDEKK 249
++I+ +L +R RQ +L SAT KV LA+ISL+ P+ +G+D+ K
Sbjct: 340 KQIIKLLPAR---------------RQTMLFSATQTRKVEDLARISLKKEPLYVGVDDDK 384
Score = 231 (86.4 bits), Expect = 1.0e-66, Sum P(3) = 1.0e-66
Identities = 48/97 (49%), Positives = 63/97 (64%)
Query: 366 LHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRVG 425
+HG KQ R TTF F +LL TDVAARGLD P+V I+QYD + EY+HRVG
Sbjct: 447 IHGKQKQNKRTTTFFQFCNADSGILLCTDVAARGLDIPEVDWIVQYDPPDDPKEYIHRVG 506
Query: 426 RTAR-LGERGDSLLFLQPVEMDYLQDLEKHGVSLTEY 461
RTAR L RG +LL L+P E+ +L+ L++ V L ++
Sbjct: 507 RTARGLNGRGHALLILRPEELGFLRYLKQSKVPLNQF 543
Score = 83 (34.3 bits), Expect = 1.0e-66, Sum P(3) = 1.0e-66
Identities = 20/51 (39%), Positives = 29/51 (56%)
Query: 290 LVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLS 340
L Q YV P R +L + LK +K++VFFS+C +V +HY LL+
Sbjct: 392 LEQGYVVCPSEKRFLLLFTFLKK----NRKKKVMVFFSSCMSVKYHYELLN 438
>UNIPROTKB|F1RY13 [details] [associations]
symbol:DDX18 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
OMA:KDGYRSY GeneTree:ENSGT00680000100037 EMBL:CU406995
Ensembl:ENSSSCT00000017112 Uniprot:F1RY13
Length = 671
Score = 402 (146.6 bits), Expect = 1.0e-66, Sum P(3) = 1.0e-66
Identities = 96/241 (39%), Positives = 149/241 (61%)
Query: 15 FASCSFSSLG--LHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVA 72
F SF+SL ++ ++E +GF T++Q ++I +L GR +L A TG+GKT+A
Sbjct: 175 FEDTSFASLTDLVNENTLRAIKE-MGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLA 233
Query: 73 YLAPIINHLQS--YSPRIDRSSGTFALVLVPTRELCLQVYEILHKLL-HRFHWIVPGYVM 129
+L P + + + PR +GT L+L PTREL +Q + +L +L+ H H G +M
Sbjct: 234 FLIPAVELIVKLRFMPR----NGTGVLILSPTRELAMQTFGVLKELMTHHVHTY--GLIM 287
Query: 130 GGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKE 189
GG NRS E +L GI+I+VATPGRLLDH+++T F++ NL+ ++ DEADRIL++GF +E
Sbjct: 288 GGSNRSAEAQKLANGINIVVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEE 347
Query: 190 IEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLET-PVLIGLDEK 248
+++I+ +L +R RQ +L SAT KV LA+ISL+ P+ +G+D+
Sbjct: 348 LKQIIKLLPTR---------------RQTMLFSATQTRKVEDLARISLKKEPLYVGVDDD 392
Query: 249 K 249
K
Sbjct: 393 K 393
Score = 235 (87.8 bits), Expect = 1.0e-66, Sum P(3) = 1.0e-66
Identities = 49/97 (50%), Positives = 64/97 (65%)
Query: 366 LHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRVG 425
+HG KQ R TTF F +LL TDVAARGLD P+V I+QYD + EY+HRVG
Sbjct: 456 IHGRQKQNKRTTTFFQFCNADSGILLCTDVAARGLDIPEVDWIVQYDPPDDPKEYIHRVG 515
Query: 426 RTAR-LGERGDSLLFLQPVEMDYLQDLEKHGVSLTEY 461
RTAR L RG +LL L+P E+ +L+ L++ V L+E+
Sbjct: 516 RTARGLNGRGHALLILRPEELGFLRYLKQSKVPLSEF 552
Score = 88 (36.0 bits), Expect = 1.0e-66, Sum P(3) = 1.0e-66
Identities = 21/51 (41%), Positives = 29/51 (56%)
Query: 290 LVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLS 340
L Q YV P R +L + LK +KL+VFFS+C +V +HY LL+
Sbjct: 401 LEQGYVVCPSEKRFLLLFTFLKK----NRKKKLMVFFSSCKSVKYHYELLN 447
Score = 39 (18.8 bits), Expect = 3.1e-46, Sum P(3) = 3.1e-46
Identities = 16/65 (24%), Positives = 30/65 (46%)
Query: 341 EFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGL 400
EF WS S +L++L K + LH + QE ++ A+ + + + + L
Sbjct: 553 EFSWSKISDIQSQLEKLIE--KNYFLHKSA-QEAYKSYIRAYDSHSLKQIFNVN----NL 605
Query: 401 DFPKV 405
+ P+V
Sbjct: 606 NLPQV 610
>UNIPROTKB|F1MSX0 [details] [associations]
symbol:F1MSX0 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
OMA:KDGYRSY GeneTree:ENSGT00680000100037 EMBL:DAAA02009745
IPI:IPI00903923 Ensembl:ENSBTAT00000039166 Uniprot:F1MSX0
Length = 674
Score = 402 (146.6 bits), Expect = 1.1e-66, Sum P(3) = 1.1e-66
Identities = 96/241 (39%), Positives = 148/241 (61%)
Query: 15 FASCSFSSLG--LHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVA 72
F SF SL ++ ++E +GF T++Q ++I +L GR +L A TG+GKT+A
Sbjct: 178 FEDTSFDSLTNLVNENTLKAIKE-MGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLA 236
Query: 73 YLAPIINHLQS--YSPRIDRSSGTFALVLVPTRELCLQVYEILHKLL-HRFHWIVPGYVM 129
+L P + + + PR +GT L+L PTREL +Q + +L +L+ H H G +M
Sbjct: 237 FLIPAVELIVKLKFMPR----NGTGVLILSPTRELAMQTFGVLKELMTHHVHTY--GLIM 290
Query: 130 GGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKE 189
GG NRS E +L GI+I+VATPGRLLDH+++T F++ NL+ ++ DEADRIL++GF +E
Sbjct: 291 GGSNRSAEAQKLANGINIVVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEE 350
Query: 190 IEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLET-PVLIGLDEK 248
+++I+ +L +R RQ +L SAT KV LA+ISL+ P+ +G+D+
Sbjct: 351 LKQIIKLLPTR---------------RQTMLFSATQTRKVEDLARISLKKEPLYVGVDDD 395
Query: 249 K 249
K
Sbjct: 396 K 396
Score = 235 (87.8 bits), Expect = 1.1e-66, Sum P(3) = 1.1e-66
Identities = 49/97 (50%), Positives = 64/97 (65%)
Query: 366 LHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRVG 425
+HG KQ R TTF F +LL TDVAARGLD P+V I+QYD + EY+HRVG
Sbjct: 459 IHGRQKQNKRTTTFFQFCNADSGILLCTDVAARGLDIPEVDWIVQYDPPDDPKEYIHRVG 518
Query: 426 RTAR-LGERGDSLLFLQPVEMDYLQDLEKHGVSLTEY 461
RTAR L RG +LL L+P E+ +L+ L++ V L+E+
Sbjct: 519 RTARGLNGRGHALLILRPEELGFLRYLKQSKVPLSEF 555
Score = 88 (36.0 bits), Expect = 1.1e-66, Sum P(3) = 1.1e-66
Identities = 21/51 (41%), Positives = 29/51 (56%)
Query: 290 LVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLS 340
L Q YV P R +L + LK +KL+VFFS+C +V +HY LL+
Sbjct: 404 LEQGYVVCPSEKRFLLLFTFLKK----NRKKKLMVFFSSCKSVKYHYELLN 450
Score = 39 (18.8 bits), Expect = 3.3e-46, Sum P(3) = 3.3e-46
Identities = 16/65 (24%), Positives = 30/65 (46%)
Query: 341 EFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGL 400
EF WS S +L++L K + LH + QE ++ A+ + + + + L
Sbjct: 556 EFSWSKISDIQSQLEKLIE--KNYFLHKSA-QEAYKSYIRAYDSHSLKQIFNVN----NL 608
Query: 401 DFPKV 405
+ P+V
Sbjct: 609 NLPQV 613
>RGD|1549712 [details] [associations]
symbol:Ddx18 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 18"
species:10116 "Rattus norvegicus" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA;ISO] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 RGD:1549712 GO:GO:0005524
GO:GO:0005730 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
HOGENOM:HOG000268799 KO:K13179 OMA:KDGYRSY
GeneTree:ENSGT00680000100037 CTD:8886 HOVERGEN:HBG105702
OrthoDB:EOG4894MF EMBL:AC128353 EMBL:BC083919 IPI:IPI00367078
RefSeq:NP_001006997.1 UniGene:Rn.26598 STRING:Q5XHY0
Ensembl:ENSRNOT00000037203 GeneID:308490 KEGG:rno:308490
UCSC:RGD:1549712 InParanoid:Q5XHY0 NextBio:658990
Genevestigator:Q5XHY0 Uniprot:Q5XHY0
Length = 674
Score = 409 (149.0 bits), Expect = 1.4e-66, Sum P(3) = 1.4e-66
Identities = 98/240 (40%), Positives = 150/240 (62%)
Query: 15 FASCSFSSLG-LHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAY 73
F SF+SL L + + E +GF+ T++Q ++I +L GR +L A TG+GKT+A+
Sbjct: 178 FEDTSFASLSNLVNENTLKAIEEMGFKHMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAF 237
Query: 74 LAPIINHLQS--YSPRIDRSSGTFALVLVPTRELCLQVYEILHKLL-HRFHWIVPGYVMG 130
L P+I + + PR +GT L+L PTREL +Q + +L +L+ H H G +MG
Sbjct: 238 LIPVIELIVKLKFMPR----NGTGVLILSPTRELAMQTFGVLKELMTHHVHTY--GLIMG 291
Query: 131 GENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEI 190
G NRS E +L GI+I+VATPGRLLDH+++T F++ NL+ ++ DEADRIL++GF +E+
Sbjct: 292 GSNRSAEVQKLLNGINIVVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEEL 351
Query: 191 EEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLET-PVLIGLDEKK 249
++I+ +L +R RQ +L SAT KV LA+ISL+ P+ +G+D+ K
Sbjct: 352 KQIIKLLPAR---------------RQTMLFSATQTRKVEDLARISLKKEPLYVGVDDDK 396
Score = 231 (86.4 bits), Expect = 1.4e-66, Sum P(3) = 1.4e-66
Identities = 48/97 (49%), Positives = 63/97 (64%)
Query: 366 LHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRVG 425
+HG KQ R TTF F +LL TDVAARGLD P+V I+QYD + EY+HRVG
Sbjct: 459 IHGKQKQNKRTTTFFQFCNADSGILLCTDVAARGLDIPEVDWIVQYDPPDDPKEYIHRVG 518
Query: 426 RTAR-LGERGDSLLFLQPVEMDYLQDLEKHGVSLTEY 461
RTAR L RG +LL L+P E+ +L+ L++ V L ++
Sbjct: 519 RTARGLNGRGHALLILRPEELGFLRYLKQSKVPLNQF 555
Score = 83 (34.3 bits), Expect = 1.4e-66, Sum P(3) = 1.4e-66
Identities = 20/51 (39%), Positives = 29/51 (56%)
Query: 290 LVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLS 340
L Q YV P R +L + LK +K++VFFS+C +V +HY LL+
Sbjct: 404 LEQGYVVCPSEKRFLLLFTFLKK----NRKKKVMVFFSSCMSVKYHYELLN 450
>UNIPROTKB|I3L7B7 [details] [associations]
symbol:DDX18 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005730 "nucleolus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005730 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
GeneTree:ENSGT00680000100037 EMBL:CU406995
Ensembl:ENSSSCT00000025125 Uniprot:I3L7B7
Length = 696
Score = 402 (146.6 bits), Expect = 1.7e-66, Sum P(3) = 1.7e-66
Identities = 96/241 (39%), Positives = 149/241 (61%)
Query: 15 FASCSFSSLG--LHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVA 72
F SF+SL ++ ++E +GF T++Q ++I +L GR +L A TG+GKT+A
Sbjct: 200 FEDTSFASLTDLVNENTLRAIKE-MGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLA 258
Query: 73 YLAPIINHLQS--YSPRIDRSSGTFALVLVPTRELCLQVYEILHKLL-HRFHWIVPGYVM 129
+L P + + + PR +GT L+L PTREL +Q + +L +L+ H H G +M
Sbjct: 259 FLIPAVELIVKLRFMPR----NGTGVLILSPTRELAMQTFGVLKELMTHHVHTY--GLIM 312
Query: 130 GGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKE 189
GG NRS E +L GI+I+VATPGRLLDH+++T F++ NL+ ++ DEADRIL++GF +E
Sbjct: 313 GGSNRSAEAQKLANGINIVVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEE 372
Query: 190 IEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLET-PVLIGLDEK 248
+++I+ +L +R RQ +L SAT KV LA+ISL+ P+ +G+D+
Sbjct: 373 LKQIIKLLPTR---------------RQTMLFSATQTRKVEDLARISLKKEPLYVGVDDD 417
Query: 249 K 249
K
Sbjct: 418 K 418
Score = 235 (87.8 bits), Expect = 1.7e-66, Sum P(3) = 1.7e-66
Identities = 49/97 (50%), Positives = 64/97 (65%)
Query: 366 LHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRVG 425
+HG KQ R TTF F +LL TDVAARGLD P+V I+QYD + EY+HRVG
Sbjct: 481 IHGRQKQNKRTTTFFQFCNADSGILLCTDVAARGLDIPEVDWIVQYDPPDDPKEYIHRVG 540
Query: 426 RTAR-LGERGDSLLFLQPVEMDYLQDLEKHGVSLTEY 461
RTAR L RG +LL L+P E+ +L+ L++ V L+E+
Sbjct: 541 RTARGLNGRGHALLILRPEELGFLRYLKQSKVPLSEF 577
Score = 88 (36.0 bits), Expect = 1.7e-66, Sum P(3) = 1.7e-66
Identities = 21/51 (41%), Positives = 29/51 (56%)
Query: 290 LVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLS 340
L Q YV P R +L + LK +KL+VFFS+C +V +HY LL+
Sbjct: 426 LEQGYVVCPSEKRFLLLFTFLKK----NRKKKLMVFFSSCKSVKYHYELLN 472
Score = 39 (18.8 bits), Expect = 5.3e-46, Sum P(3) = 5.3e-46
Identities = 16/65 (24%), Positives = 30/65 (46%)
Query: 341 EFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGL 400
EF WS S +L++L K + LH + QE ++ A+ + + + + L
Sbjct: 578 EFSWSKISDIQSQLEKLIE--KNYFLHKSA-QEAYKSYIRAYDSHSLKQIFNVN----NL 630
Query: 401 DFPKV 405
+ P+V
Sbjct: 631 NLPQV 635
>UNIPROTKB|Q9NVP1 [details] [associations]
symbol:DDX18 "ATP-dependent RNA helicase DDX18"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=TAS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005730 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
InterPro:IPR025313 Pfam:PF13959 HOGENOM:HOG000268799 KO:K13179
OMA:KDGYRSY EMBL:AK001467 EMBL:BC001238 EMBL:BC003360 EMBL:BC024739
EMBL:X98743 EMBL:CR457060 IPI:IPI00301323 PIR:S71758
RefSeq:NP_006764.3 UniGene:Hs.363492 PDB:3LY5 PDBsum:3LY5
ProteinModelPortal:Q9NVP1 SMR:Q9NVP1 IntAct:Q9NVP1
MINT:MINT-1382348 STRING:Q9NVP1 PhosphoSite:Q9NVP1 DMDM:20532388
SWISS-2DPAGE:Q9NVP1 PaxDb:Q9NVP1 PeptideAtlas:Q9NVP1 PRIDE:Q9NVP1
Ensembl:ENST00000263239 GeneID:8886 KEGG:hsa:8886 UCSC:uc002tlh.1
CTD:8886 GeneCards:GC02P118572 HGNC:HGNC:2741 HPA:HPA035400
MIM:606355 neXtProt:NX_Q9NVP1 PharmGKB:PA27207 HOVERGEN:HBG105702
InParanoid:Q9NVP1 OrthoDB:EOG4894MF PhylomeDB:Q9NVP1
ChEMBL:CHEMBL5060 ChiTaRS:DDX18 EvolutionaryTrace:Q9NVP1
GenomeRNAi:8886 NextBio:33369 ArrayExpress:Q9NVP1 Bgee:Q9NVP1
CleanEx:HS_DDX18 Genevestigator:Q9NVP1 GermOnline:ENSG00000088205
Uniprot:Q9NVP1
Length = 670
Score = 402 (146.6 bits), Expect = 3.3e-66, Sum P(3) = 3.3e-66
Identities = 96/241 (39%), Positives = 149/241 (61%)
Query: 15 FASCSFSSLG--LHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVA 72
F SF+SL ++ ++E +GF T++Q ++I +L GR +L A TG+GKT+A
Sbjct: 174 FEDTSFASLCNLVNENTLKAIKE-MGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLA 232
Query: 73 YLAPIINHLQS--YSPRIDRSSGTFALVLVPTRELCLQVYEILHKLL-HRFHWIVPGYVM 129
+L P + + + PR +GT L+L PTREL +Q + +L +L+ H H G +M
Sbjct: 233 FLIPAVELIVKLRFMPR----NGTGVLILSPTRELAMQTFGVLKELMTHHVHTY--GLIM 286
Query: 130 GGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKE 189
GG NRS E +L GI+I+VATPGRLLDH+++T F++ NL+ ++ DEADRIL++GF +E
Sbjct: 287 GGSNRSAEAQKLGNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEE 346
Query: 190 IEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLET-PVLIGLDEK 248
+++I+ +L +R RQ +L SAT KV LA+ISL+ P+ +G+D+
Sbjct: 347 LKQIIKLLPTR---------------RQTMLFSATQTRKVEDLARISLKKEPLYVGVDDD 391
Query: 249 K 249
K
Sbjct: 392 K 392
Score = 232 (86.7 bits), Expect = 3.3e-66, Sum P(3) = 3.3e-66
Identities = 49/97 (50%), Positives = 63/97 (64%)
Query: 366 LHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRVG 425
+HG KQ R TTF F LL TDVAARGLD P+V I+QYD + EY+HRVG
Sbjct: 455 IHGKQKQNKRTTTFFQFCNADSGTLLCTDVAARGLDIPEVDWIVQYDPPDDPKEYIHRVG 514
Query: 426 RTAR-LGERGDSLLFLQPVEMDYLQDLEKHGVSLTEY 461
RTAR L RG +LL L+P E+ +L+ L++ V L+E+
Sbjct: 515 RTARGLNGRGHALLILRPEELGFLRYLKQSKVPLSEF 551
Score = 86 (35.3 bits), Expect = 3.3e-66, Sum P(3) = 3.3e-66
Identities = 21/51 (41%), Positives = 29/51 (56%)
Query: 290 LVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLS 340
L Q YV P R +L + LK +KL+VFFS+C +V +HY LL+
Sbjct: 400 LEQGYVVCPSEKRFLLLFTFLKK----NRKKKLMVFFSSCMSVKYHYELLN 446
>ASPGD|ASPL0000056064 [details] [associations]
symbol:AN0204 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005730
"nucleolus" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
EMBL:BN001308 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 EMBL:AACD01000005
InterPro:IPR025313 Pfam:PF13959 KO:K14806 RefSeq:XP_657808.1
ProteinModelPortal:Q5BGX6 STRING:Q5BGX6
EnsemblFungi:CADANIAT00002528 GeneID:2875981 KEGG:ani:AN0204.2
HOGENOM:HOG000268799 OMA:RAYATHI OrthoDB:EOG4W6S47 Uniprot:Q5BGX6
Length = 778
Score = 469 (170.2 bits), Expect = 1.6e-63, Sum P(2) = 1.6e-63
Identities = 113/280 (40%), Positives = 160/280 (57%)
Query: 19 SFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGR-HVLVNAATGTGKTVAYLAPI 77
+F++LGL TL L +L +APT +Q +I +L + A TG+GKT+AYL P+
Sbjct: 152 TFTNLGLSPTLAAHLLTKLELKAPTAIQKASITQLLKEETDAFIQAETGSGKTLAYLLPL 211
Query: 78 INHLQSYS-----------PRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPG 126
+ + + S + R SG FA++L PTRELC Q+ +L LL HWIV G
Sbjct: 212 VQRIMALSRAKNEGDAKGDTSVHRDSGLFAIILAPTRELCKQISVVLEGLLRCAHWIVAG 271
Query: 127 YVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGF 186
V+GGE + EKARLRKG++ILVATPGRL DHL++T + +N+RW++ DE DR++ELGF
Sbjct: 272 TVIGGEKKKSEKARLRKGLNILVATPGRLADHLENTQALDVSNVRWLVLDEGDRLMELGF 331
Query: 187 GKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLD 246
KE++EI+ L +R S G KR +L SATL V L +ISL+ V I D
Sbjct: 332 EKELQEIISKLDARQRPSRIPGVPA---KRATILCSATLKMNVQKLGEISLKDAVHIKAD 388
Query: 247 E-----KKLPEDKSHVRFGSLESDVKEEVEHPSTTMRSTT 281
+K EDK F + + +K+ + +R T
Sbjct: 389 PADEDGEKTAEDKDGDAF-RVPAQLKQSYAIVAAKLRLVT 427
Score = 209 (78.6 bits), Expect = 1.6e-63, Sum P(2) = 1.6e-63
Identities = 41/92 (44%), Positives = 64/92 (69%)
Query: 364 FRLHGNMKQEDRRTTFGAF-KTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVH 422
++LHG++ Q R +T +F K ++L+ TDVA+RGLD P V +++YD A A E++H
Sbjct: 517 YKLHGSLPQHVRTSTLSSFAKNRDPSVLICTDVASRGLDLPNVDLVVEYDPAFSADEHLH 576
Query: 423 RVGRTARLGERGDSLLFLQP-VEMDYLQDLEK 453
R+GRTARLG G +L+FL P E +Y++ L++
Sbjct: 577 RIGRTARLGRDGRALVFLLPGCEENYVEILKR 608
Score = 99 (39.9 bits), Expect = 5.8e-19, Sum P(2) = 5.8e-19
Identities = 24/80 (30%), Positives = 42/80 (52%)
Query: 262 LESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVS-Q 320
+++D +E + T + F++PAQL Q Y V RL L + +K F + S
Sbjct: 385 IKADPADE-DGEKTAEDKDGDAFRVPAQLKQSYAIVAAKLRLVTLTAFMKRTFMRKGSVM 443
Query: 321 KLVVFFSTCDAVDFHYSLLS 340
K ++F S D+V+FH+ + +
Sbjct: 444 KAIIFVSCADSVNFHFEVFT 463
>FB|FBgn0025140 [details] [associations]
symbol:pit "pitchoune" species:7227 "Drosophila melanogaster"
[GO:0005730 "nucleolus" evidence=NAS;IDA] [GO:0016049 "cell growth"
evidence=IMP] [GO:0008283 "cell proliferation" evidence=IMP]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS;NAS]
[GO:0003724 "RNA helicase activity" evidence=ISS] [GO:0005634
"nucleus" evidence=NAS] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 EMBL:AE014297
GO:GO:0005524 GO:GO:0005730 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313
Pfam:PF13959 KO:K13179 OMA:KDGYRSY EMBL:U84552 EMBL:AY071402
EMBL:AY119620 RefSeq:NP_524446.3 RefSeq:NP_732694.2
UniGene:Dm.33428 ProteinModelPortal:Q9VD51 SMR:Q9VD51
DIP:DIP-19700N MINT:MINT-1004790 STRING:Q9VD51 PaxDb:Q9VD51
EnsemblMetazoa:FBtr0084174 EnsemblMetazoa:FBtr0084175 GeneID:42595
KEGG:dme:Dmel_CG6375 UCSC:CG6375-RA CTD:42595 FlyBase:FBgn0025140
GeneTree:ENSGT00680000100037 InParanoid:Q9VD51 OrthoDB:EOG4H189W
PhylomeDB:Q9VD51 ChiTaRS:pit GenomeRNAi:42595 NextBio:829597
Bgee:Q9VD51 GermOnline:CG6375 Uniprot:Q9VD51
Length = 680
Score = 389 (142.0 bits), Expect = 1.9e-63, Sum P(3) = 1.9e-63
Identities = 92/236 (38%), Positives = 149/236 (63%)
Query: 19 SFSSL-GLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAP- 76
SF+SL G S + + +GF T++Q++++ +L GR ++ A TG+GKT+A+L P
Sbjct: 186 SFASLKGAVSEATLRAIKEMGFTEMTEIQSKSLTPLLKGRDLVGAAQTGSGKTLAFLIPA 245
Query: 77 --IINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENR 134
+IN L+ + PR +GT +++ PTREL +Q + +L +L+ H G VMGG NR
Sbjct: 246 VELINKLR-FMPR----NGTGVIIISPTRELSMQTFGVLKELMAHHHHTY-GLVMGGSNR 299
Query: 135 SKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEIL 194
E +L KGI+ILVATPGRLLDHL+++ FL+ NL+ +I DE DRILE+GF +E+++I+
Sbjct: 300 QVESEKLGKGINILVATPGRLLDHLQNSPDFLYKNLQCLIIDEVDRILEIGFEEELKQII 359
Query: 195 DILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLET-PVLIGLDEKK 249
++L R RQ +L SAT ++ L+K++L++ P+ +G+ + +
Sbjct: 360 NLLPKR---------------RQTMLFSATQTARIEALSKLALKSEPIYVGVHDNQ 400
Score = 227 (85.0 bits), Expect = 1.9e-63, Sum P(3) = 1.9e-63
Identities = 53/125 (42%), Positives = 72/125 (57%)
Query: 366 LHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRVG 425
+HG KQ R TTF F + +LL TDVAARGLD P+V I+QYD + EY+HRVG
Sbjct: 463 IHGKQKQTKRTTTFFQFCNAESGILLCTDVAARGLDIPQVDWIVQYDPPDDPREYIHRVG 522
Query: 426 RTAR-LGERGDSLLFLQPVEMDYLQDLEKHGVSLTEYPLL--KVLDSFPLYGQKPRVKKF 482
RTAR G G +LL ++P E+ +L+ L+ V L E+ K+ D L +K K +
Sbjct: 523 RTARGSGTSGHALLLMRPEELGFLRYLKAAKVPLNEFEFSWQKIAD-IQLQLEKLIAKNY 581
Query: 483 LTTES 487
+S
Sbjct: 582 FLNQS 586
Score = 80 (33.2 bits), Expect = 1.9e-63, Sum P(3) = 1.9e-63
Identities = 19/51 (37%), Positives = 29/51 (56%)
Query: 290 LVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLS 340
L Q Y+ P RL VL + LK +K++VFFS+C +V +H+ L +
Sbjct: 408 LEQGYIVCPSEKRLLVLFTFLKK----NRKKKVMVFFSSCMSVKYHHELFN 454
Score = 37 (18.1 bits), Expect = 1.4e-43, Sum P(3) = 1.4e-43
Identities = 10/34 (29%), Positives = 20/34 (58%)
Query: 339 LSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQ 372
L+EF++S D++L+ L K + L+ + K+
Sbjct: 556 LNEFEFSWQKIADIQLQLEKLIAKNYFLNQSAKE 589
>POMBASE|SPAC1F7.02c [details] [associations]
symbol:has1 "ATP-dependent RNA helicase Has1
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=ISO] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISO] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0006364 "rRNA processing" evidence=ISO]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 PomBase:SPAC1F7.02c GO:GO:0005524 EMBL:CU329670
GO:GO:0005730 GenomeReviews:CU329670_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
InterPro:IPR025313 Pfam:PF13959 HOGENOM:HOG000268799 KO:K13179
OMA:KDGYRSY OrthoDB:EOG4ZKNVS PIR:S62574 RefSeq:NP_594488.1
ProteinModelPortal:Q09916 STRING:Q09916 EnsemblFungi:SPAC1F7.02c.1
GeneID:2541668 KEGG:spo:SPAC1F7.02c NextBio:20802761 Uniprot:Q09916
Length = 578
Score = 433 (157.5 bits), Expect = 8.8e-63, Sum P(2) = 8.8e-63
Identities = 113/291 (38%), Positives = 168/291 (57%)
Query: 20 FSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIIN 79
FS L L + ++E +GFE T++Q ++IP +L+GR VL A TG+GKT+A+L P I
Sbjct: 91 FSDLQLSENIQKAIKE-MGFETMTEIQKRSIPPLLAGRDVLGAAKTGSGKTLAFLIPTIE 149
Query: 80 HLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKA 139
L Y+ + +GT +++ PTREL LQ++ + +LL ++H G V+GG NR E
Sbjct: 150 ML--YALKFKPRNGTGVIIISPTRELALQIFGVAKELL-KYHHQTFGIVIGGANRRAEAD 206
Query: 140 RLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILGS 199
+L KG+++LVATPGRLLDHL++T F+ NLR ++ DEADRILE+GF E+ +I+ IL S
Sbjct: 207 KLVKGVNLLVATPGRLLDHLQNTKGFVFRNLRSLVIDEADRILEIGFEDEMRQIMKILPS 266
Query: 200 RNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLET-PVLIGLDEKKLPE-----D 253
N RQ LL SAT KV LA+ISL+ P+ + +D K +
Sbjct: 267 EN--------------RQTLLFSATQTTKVEDLARISLKPGPLYVNVDSGKPTSTVEGLE 312
Query: 254 KSHV------RFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVP 298
+ +V RF L S +K ++ S+ K A+L+ Y+ +P
Sbjct: 313 QGYVVVDSDKRFLLLFSFLKRNLKKKVIVFMSSCASVKYMAELLN-YIDLP 362
Score = 226 (84.6 bits), Expect = 8.8e-63, Sum P(2) = 8.8e-63
Identities = 52/105 (49%), Positives = 67/105 (63%)
Query: 366 LHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRVG 425
LHG KQ+ R TF F +K +LL T+VAARGLD P V I+QYD + +Y+HRVG
Sbjct: 366 LHGKQKQQRRTNTFFEFCNAEKGILLCTNVAARGLDIPAVDWIVQYDPPDDPRDYIHRVG 425
Query: 426 RTARLGERGD--SLLFLQPVEMDYLQDLEKHGVSLTEY--PLLKV 466
RTAR G +G SL+FL P E+ +L+ L+ VSL E+ P KV
Sbjct: 426 RTAR-GTKGTGKSLMFLAPSELGFLRYLKTAKVSLNEFEFPANKV 469
Score = 67 (28.6 bits), Expect = 5.3e-18, Sum P(2) = 5.3e-18
Identities = 18/51 (35%), Positives = 27/51 (52%)
Query: 290 LVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLS 340
L Q YV V R +L S LK + +K++VF S+C +V + LL+
Sbjct: 311 LEQGYVVVDSDKRFLLLFSFLKR----NLKKKVIVFMSSCASVKYMAELLN 357
>CGD|CAL0000117 [details] [associations]
symbol:DBP7 species:5476 "Candida albicans" [GO:0005730
"nucleolus" evidence=IEA] [GO:0000463 "maturation of LSU-rRNA from
tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
CGD:CAL0000117 GO:GO:0005524 GO:GO:0005730 GO:GO:0003723
EMBL:AP006852 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959 EMBL:AACQ01000156
RefSeq:XP_712474.1 RefSeq:XP_888745.1 ProteinModelPortal:Q59S50
STRING:Q59S50 GeneID:3645903 GeneID:3704147 KEGG:cal:CaO19.6902
KEGG:cal:CaO19_6902 KO:K14806 Uniprot:Q59S50
Length = 727
Score = 477 (173.0 bits), Expect = 3.9e-62, Sum P(2) = 3.9e-62
Identities = 103/231 (44%), Positives = 145/231 (62%)
Query: 19 SFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVL-VNAATGTGKTVAYLAPI 77
+FS LGL+ L L + L F PTK+Q IP ++S + L V A TG+GKT+A++ PI
Sbjct: 136 NFSGLGLNEKLSIHLTDHLRFMHPTKIQQLVIPSLISTENDLFVKAQTGSGKTLAFVLPI 195
Query: 78 INHLQSYSP-RIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSK 136
+ L + +I+R SG FA++L PTREL Q+Y +L L HWIVPG V+GGE +
Sbjct: 196 FHKLMRENKFKINRESGLFAIILTPTRELATQIYGVLETLTRCHHWIVPGIVIGGEKKKS 255
Query: 137 EKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDI 196
EKARLRKG +ILVATPGRL DHL++T + + LRW++ DE D+++ELGF I +I
Sbjct: 256 EKARLRKGCNILVATPGRLADHLENTKTLDISQLRWLVLDEGDKLMELGFEDTIAQITAK 315
Query: 197 LGSRN-IGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLD 246
+ S + I E + +R N+L SATL+ V L I L+ P +I ++
Sbjct: 316 IDSNSKIADTAEKWQGLPSRRINMLCSATLHSNVKKLGSIVLKDPEMISVE 366
Score = 183 (69.5 bits), Expect = 3.9e-62, Sum P(2) = 3.9e-62
Identities = 36/89 (40%), Positives = 58/89 (65%)
Query: 364 FRLHGNMKQEDRRTTFGAFKTEKKA---LLLSTDVAARGLDFPKVKCIIQYDSAGEATEY 420
++LHG++ Q+ R +T +F + + +L TDVA+RGLD P V +I+YD ++
Sbjct: 485 YKLHGSLSQQTRASTLQSFVKDNNSYNKILFCTDVASRGLDLPNVANVIEYDPPFTIDDH 544
Query: 421 VHRVGRTARLGERGDSLLFLQP-VEMDYL 448
+HR+GR+ARLG G++ LFL P +E Y+
Sbjct: 545 LHRIGRSARLGNEGNATLFLLPGIEEGYV 573
Score = 95 (38.5 bits), Expect = 9.5e-16, Sum P(2) = 9.5e-16
Identities = 36/116 (31%), Positives = 57/116 (49%)
Query: 226 NEKVNHLAKISLETPVL-IGLDEKKLPEDKSHVRFGSLESDVKEEVEHPSTTMRSTTEDF 284
+ ++N L +L + V +G K PE S V S+ V + +TT ST D
Sbjct: 334 SRRINMLCSATLHSNVKKLGSIVLKDPEMIS-VETASVAGTVSFDETIATTT--STAPD- 389
Query: 285 KLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLS 340
QL+Q V VP RL L ++L + +++ +VFFS D+VDFH+ + +
Sbjct: 390 ----QLIQNVVVVPPKLRLVTLDALLLKI-SKHSAERTIVFFSCSDSVDFHFDVFT 440
>CGD|CAL0003050 [details] [associations]
symbol:HAS1 species:5476 "Candida albicans" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=IGI;ISS] [GO:0042274
"ribosomal small subunit biogenesis" evidence=IGI;ISS] [GO:0030686
"90S preribosome" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0005635 "nuclear envelope" evidence=IEA]
[GO:0030687 "preribosome, large subunit precursor" evidence=IEA]
[GO:0006364 "rRNA processing" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 CGD:CAL0003050 GO:GO:0005524
GO:GO:0005730 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0004004 GO:GO:0042274
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 EMBL:AACQ01000012
InterPro:IPR025313 Pfam:PF13959 KO:K13179 EMBL:AACQ01000011
RefSeq:XP_721871.1 RefSeq:XP_722031.1 STRING:Q5AK59 GeneID:3636361
GeneID:3636443 KEGG:cal:CaO19.11444 KEGG:cal:CaO19.3962
Uniprot:Q5AK59
Length = 565
Score = 420 (152.9 bits), Expect = 2.6e-61, Sum P(2) = 2.6e-61
Identities = 109/276 (39%), Positives = 165/276 (59%)
Query: 35 ERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGT 94
+ +GF TKVQA+ IP +L+GR VL A TG+GKT+A+L P I L YS +I +GT
Sbjct: 124 KEMGFTKMTKVQAKTIPPLLAGRDVLGAAKTGSGKTLAFLIPAIELL--YSLKIKPRNGT 181
Query: 95 FALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGR 154
+++ PTREL LQ++ + +L+ +FH G V+GG +R +E +L KG+++LVATPGR
Sbjct: 182 AVIIITPTRELALQIFGVARELM-QFHSQTCGIVIGGADRRQEATKLAKGVNLLVATPGR 240
Query: 155 LLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNV 214
LLDHLK+T F+ +NL+ ++ DEADRILE+GF E+++I+ +L + N
Sbjct: 241 LLDHLKNTQ-FVFSNLKALVIDEADRILEIGFEDEMKQIIKVLPNEN------------- 286
Query: 215 KRQNLLLSATLNEKVNHLAKISLET-PVLIGL-DEKKLPE----DKSHV------RFGSL 262
RQ++L SAT KV LA+ISL P+ I + EK + ++ +V RF L
Sbjct: 287 -RQSMLFSATQTTKVEDLARISLRPGPLYINVVPEKDVSTADGLEQGYVVCDSDKRFLLL 345
Query: 263 ESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVP 298
S +K V+ S+ K ++L+ Y+ +P
Sbjct: 346 FSFLKRNVKKKIIVFLSSCNSVKFYSELLN-YIDLP 380
Score = 225 (84.3 bits), Expect = 2.6e-61, Sum P(2) = 2.6e-61
Identities = 47/97 (48%), Positives = 63/97 (64%)
Query: 366 LHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRVG 425
LHG KQ+ R TF F K+ +L+ TDVAARGLD P V I+Q+D + +Y+HRVG
Sbjct: 384 LHGKQKQQKRTNTFFEFCNAKQGILVCTDVAARGLDIPAVDWIVQFDPPDDPRDYIHRVG 443
Query: 426 RTARLGE-RGDSLLFLQPVEMDYLQDLEKHGVSLTEY 461
RTAR + +G SL+FL P E+ +L+ L+ V L EY
Sbjct: 444 RTARGTQGKGKSLMFLTPSELGFLRYLKAAKVPLNEY 480
Score = 78 (32.5 bits), Expect = 4.5e-19, Sum P(2) = 4.5e-19
Identities = 50/217 (23%), Positives = 92/217 (42%)
Query: 138 KARLRKGISILVATPGR-----LLDHLKHTSSFLHTNLRWIIFDEADRILELG-FGKEIE 191
K + R G ++++ TP R + + F H+ I+ ADR E K +
Sbjct: 174 KIKPRNGTAVIIITPTRELALQIFGVARELMQF-HSQTCGIVIGGADRRQEATKLAKGVN 232
Query: 192 EILDILGSRNIGSIGEGNEV-SNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKL 250
++ G R + + V SN+K A + ++ + + +I E + + K L
Sbjct: 233 LLVATPG-RLLDHLKNTQFVFSNLK-------ALVIDEADRILEIGFEDEMKQII--KVL 282
Query: 251 P-EDKSHVRFGSLESDVKEEVEH----PSTTMRSTT--EDFKLPAQLVQRYVKVPCGSRL 303
P E++ + F + ++ E++ P + +D L Q YV R
Sbjct: 283 PNENRQSMLFSATQTTKVEDLARISLRPGPLYINVVPEKDVSTADGLEQGYVVCDSDKRF 342
Query: 304 AVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLS 340
+L S LK V +K++VF S+C++V F+ LL+
Sbjct: 343 LLLFSFLKR----NVKKKIIVFLSSCNSVKFYSELLN 375
>UNIPROTKB|Q5AK59 [details] [associations]
symbol:HAS1 "ATP-dependent RNA helicase HAS1"
species:237561 "Candida albicans SC5314" [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=IGI] [GO:0042274 "ribosomal small
subunit biogenesis" evidence=IGI] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 CGD:CAL0003050
GO:GO:0005524 GO:GO:0005730 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0004004
GO:GO:0042274 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
EMBL:AACQ01000012 InterPro:IPR025313 Pfam:PF13959 KO:K13179
EMBL:AACQ01000011 RefSeq:XP_721871.1 RefSeq:XP_722031.1
STRING:Q5AK59 GeneID:3636361 GeneID:3636443 KEGG:cal:CaO19.11444
KEGG:cal:CaO19.3962 Uniprot:Q5AK59
Length = 565
Score = 420 (152.9 bits), Expect = 2.6e-61, Sum P(2) = 2.6e-61
Identities = 109/276 (39%), Positives = 165/276 (59%)
Query: 35 ERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGT 94
+ +GF TKVQA+ IP +L+GR VL A TG+GKT+A+L P I L YS +I +GT
Sbjct: 124 KEMGFTKMTKVQAKTIPPLLAGRDVLGAAKTGSGKTLAFLIPAIELL--YSLKIKPRNGT 181
Query: 95 FALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGR 154
+++ PTREL LQ++ + +L+ +FH G V+GG +R +E +L KG+++LVATPGR
Sbjct: 182 AVIIITPTRELALQIFGVARELM-QFHSQTCGIVIGGADRRQEATKLAKGVNLLVATPGR 240
Query: 155 LLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNV 214
LLDHLK+T F+ +NL+ ++ DEADRILE+GF E+++I+ +L + N
Sbjct: 241 LLDHLKNTQ-FVFSNLKALVIDEADRILEIGFEDEMKQIIKVLPNEN------------- 286
Query: 215 KRQNLLLSATLNEKVNHLAKISLET-PVLIGL-DEKKLPE----DKSHV------RFGSL 262
RQ++L SAT KV LA+ISL P+ I + EK + ++ +V RF L
Sbjct: 287 -RQSMLFSATQTTKVEDLARISLRPGPLYINVVPEKDVSTADGLEQGYVVCDSDKRFLLL 345
Query: 263 ESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVP 298
S +K V+ S+ K ++L+ Y+ +P
Sbjct: 346 FSFLKRNVKKKIIVFLSSCNSVKFYSELLN-YIDLP 380
Score = 225 (84.3 bits), Expect = 2.6e-61, Sum P(2) = 2.6e-61
Identities = 47/97 (48%), Positives = 63/97 (64%)
Query: 366 LHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRVG 425
LHG KQ+ R TF F K+ +L+ TDVAARGLD P V I+Q+D + +Y+HRVG
Sbjct: 384 LHGKQKQQKRTNTFFEFCNAKQGILVCTDVAARGLDIPAVDWIVQFDPPDDPRDYIHRVG 443
Query: 426 RTARLGE-RGDSLLFLQPVEMDYLQDLEKHGVSLTEY 461
RTAR + +G SL+FL P E+ +L+ L+ V L EY
Sbjct: 444 RTARGTQGKGKSLMFLTPSELGFLRYLKAAKVPLNEY 480
Score = 78 (32.5 bits), Expect = 4.5e-19, Sum P(2) = 4.5e-19
Identities = 50/217 (23%), Positives = 92/217 (42%)
Query: 138 KARLRKGISILVATPGR-----LLDHLKHTSSFLHTNLRWIIFDEADRILELG-FGKEIE 191
K + R G ++++ TP R + + F H+ I+ ADR E K +
Sbjct: 174 KIKPRNGTAVIIITPTRELALQIFGVARELMQF-HSQTCGIVIGGADRRQEATKLAKGVN 232
Query: 192 EILDILGSRNIGSIGEGNEV-SNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKL 250
++ G R + + V SN+K A + ++ + + +I E + + K L
Sbjct: 233 LLVATPG-RLLDHLKNTQFVFSNLK-------ALVIDEADRILEIGFEDEMKQII--KVL 282
Query: 251 P-EDKSHVRFGSLESDVKEEVEH----PSTTMRSTT--EDFKLPAQLVQRYVKVPCGSRL 303
P E++ + F + ++ E++ P + +D L Q YV R
Sbjct: 283 PNENRQSMLFSATQTTKVEDLARISLRPGPLYINVVPEKDVSTADGLEQGYVVCDSDKRF 342
Query: 304 AVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLS 340
+L S LK V +K++VF S+C++V F+ LL+
Sbjct: 343 LLLFSFLKR----NVKKKIIVFLSSCNSVKFYSELLN 375
>WB|WBGene00015232 [details] [associations]
symbol:B0511.6 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0040007 "growth"
evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0008340 "determination of adult lifespan"
evidence=IMP] [GO:0043652 "engulfment of apoptotic cell"
evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0008340
GO:GO:0040007 GO:GO:0002119 GO:GO:0003723 GO:GO:0043652
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
InterPro:IPR025313 Pfam:PF13959 HOGENOM:HOG000268799 KO:K13179
OMA:KDGYRSY GeneTree:ENSGT00680000100037 HSSP:P10081 EMBL:FO080219
PIR:T33113 RefSeq:NP_492779.1 ProteinModelPortal:O61815 SMR:O61815
DIP:DIP-27278N MINT:MINT-1068292 STRING:O61815 PaxDb:O61815
EnsemblMetazoa:B0511.6.1 EnsemblMetazoa:B0511.6.2 GeneID:172954
KEGG:cel:CELE_B0511.6 UCSC:B0511.6.1 CTD:172954 WormBase:B0511.6
InParanoid:O61815 NextBio:877669 Uniprot:O61815
Length = 544
Score = 414 (150.8 bits), Expect = 1.1e-60, Sum P(2) = 1.1e-60
Identities = 102/247 (41%), Positives = 158/247 (63%)
Query: 6 KKKET-VKEIFASCSFSSL-G-LHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVN 62
+ ET V E +F+SL G +++ L + + LGF T++QA++I +L G+ VL +
Sbjct: 53 ESSETKVSEFLTKTTFASLEGKVNANLLKAV-QGLGFTTMTEIQAKSIDPLLEGKDVLAS 111
Query: 63 AATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHW 122
A TG+GKT+A+L P I L + + + +GT +++ PTREL +Q Y +L +LL +
Sbjct: 112 AKTGSGKTLAFLLPAIELLHKLNWK--QHNGTGVIIVSPTRELSMQTYGVLSELLEGSN- 168
Query: 123 IVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRIL 182
+ G VMGG NRS EK +L KG+SILVATPGRLLDHL++T +FL N++ +I DEADRIL
Sbjct: 169 LTYGLVMGGSNRSAEKDKLAKGVSILVATPGRLLDHLQNTDNFLVRNMKCLIIDEADRIL 228
Query: 183 ELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLET-PV 241
++GF E++++L R++ +RQ++L SAT + KV+ L K++L + PV
Sbjct: 229 DIGFEIEMQQVL-----RHLPK----------QRQSMLFSATHSPKVDELVKLALHSNPV 273
Query: 242 LIGLDEK 248
+ + EK
Sbjct: 274 RVSVHEK 280
Score = 225 (84.3 bits), Expect = 1.1e-60, Sum P(2) = 1.1e-60
Identities = 48/97 (49%), Positives = 62/97 (63%)
Query: 366 LHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRVG 425
+HG KQ+ R TTF F + +LL TDVAARGLD P V I+QYD E EY+HRVG
Sbjct: 344 IHGKQKQQKRTTTFFQFCQAETGILLCTDVAARGLDIPAVDWIVQYDPTDEPREYIHRVG 403
Query: 426 RTAR-LGERGDSLLFLQPVEMDYLQDLEKHGVSLTEY 461
RTAR G +LL L+P E+ +L+ L+ V+L E+
Sbjct: 404 RTARGTNGSGKALLVLRPEELGFLRYLKAAKVTLNEF 440
Score = 93 (37.8 bits), Expect = 1.0e-20, Sum P(2) = 1.0e-20
Identities = 27/100 (27%), Positives = 51/100 (51%)
Query: 248 KKLPEDKSHVRFGSLESDVKEEV------EHP-STTMRSTTEDFKLPAQLVQRYVKVPCG 300
+ LP+ + + F + S +E+ +P ++ E+ + L Q Y+ P
Sbjct: 241 RHLPKQRQSMLFSATHSPKVDELVKLALHSNPVRVSVHEKAEEATVEG-LQQGYIVAPSD 299
Query: 301 SRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLS 340
RL +L + LK ++K++VFFS+C++V FH+ LL+
Sbjct: 300 KRLLLLFTFLKK----NKTKKVMVFFSSCNSVKFHHELLN 335
Score = 37 (18.1 bits), Expect = 7.0e-15, Sum P(2) = 7.0e-15
Identities = 8/23 (34%), Positives = 14/23 (60%)
Query: 246 DEKKLPEDKSHVRFGSLESDVKE 268
DE+++ E++ H S E+ V E
Sbjct: 39 DEEEVEEEQKHQTEESSETKVSE 61
>ZFIN|ZDB-GENE-030131-9685 [details] [associations]
symbol:ddx18 "DEAD (Asp-Glu-Ala-Asp) box
polypeptide 18" species:7955 "Danio rerio" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0030099 "myeloid
cell differentiation" evidence=IMP] [GO:0030097 "hemopoiesis"
evidence=IMP] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 ZFIN:ZDB-GENE-030131-9685
GO:GO:0005524 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0030099 InterPro:IPR014014
PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959 KO:K13179 CTD:8886
HOVERGEN:HBG105702 EMBL:AY648748 IPI:IPI00492099
RefSeq:NP_001003411.1 UniGene:Dr.24235 ProteinModelPortal:Q6DRL1
STRING:Q6DRL1 PRIDE:Q6DRL1 GeneID:321127 KEGG:dre:321127
InParanoid:Q6DRL1 NextBio:20807243 ArrayExpress:Q6DRL1 Bgee:Q6DRL1
Uniprot:Q6DRL1
Length = 653
Score = 418 (152.2 bits), Expect = 1.7e-60, Sum P(2) = 1.7e-60
Identities = 101/239 (42%), Positives = 146/239 (61%)
Query: 15 FASCSFSSLG--LHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVA 72
F SF+SL + ++E +GF+ T++Q + I +L GR VL A TG+GKT+A
Sbjct: 156 FEDRSFASLSEVVSENTLKGVKE-MGFDTMTEIQHKTIRPLLEGRDVLAAAKTGSGKTLA 214
Query: 73 YLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLL-HRFHWIVPGYVMGG 131
+L P I + Y + +GT +VL PTREL +Q Y +L +L+ H H G +MGG
Sbjct: 215 FLIPSIELI--YKLKFMPRNGTGVIVLSPTRELAMQTYGVLKELMTHHVHTY--GLIMGG 270
Query: 132 ENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIE 191
NRS E +L G++ILVATPGRLLDHL++T F+ NL+ +I DEADRILE+GF +E++
Sbjct: 271 SNRSAEAQKLANGVNILVATPGRLLDHLQNTPGFMFKNLQCLIIDEADRILEVGFEEELK 330
Query: 192 EILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLET-PVLIGLDEKK 249
+I+ +L KRQ++L SAT KV LA+ISL+ P+ +G+D+ K
Sbjct: 331 QIIKLLPK---------------KRQSMLFSATQTRKVEDLARISLKKEPLYVGVDDNK 374
Score = 227 (85.0 bits), Expect = 1.7e-60, Sum P(2) = 1.7e-60
Identities = 47/97 (48%), Positives = 64/97 (65%)
Query: 366 LHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRVG 425
+HG KQ R TTF F +LL TDVAARGLD P+V I+Q+D + EY+HRVG
Sbjct: 437 IHGKQKQTKRTTTFFQFCNADSGILLCTDVAARGLDIPEVDWIVQFDPPDDPKEYIHRVG 496
Query: 426 RTAR-LGERGDSLLFLQPVEMDYLQDLEKHGVSLTEY 461
RTAR + RG +LL L+P E+ +L+ L++ V L+E+
Sbjct: 497 RTARGINGRGHALLILRPEELGFLRFLKQAKVPLSEF 533
Score = 91 (37.1 bits), Expect = 2.1e-20, Sum P(2) = 2.1e-20
Identities = 31/99 (31%), Positives = 47/99 (47%)
Query: 248 KKLPEDKSHVRFGSLESDVKEEVEHPSTTMRST---TEDFKLPAQ---LVQRYVKVPCGS 301
K LP+ + + F + ++ E++ S +D K A L Q YV P
Sbjct: 334 KLLPKKRQSMLFSATQTRKVEDLARISLKKEPLYVGVDDNKDTATVEGLEQGYVVCPSEK 393
Query: 302 RLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLS 340
R +L + LK +KL+VFFS+C +V FHY LL+
Sbjct: 394 RFLLLFTFLKK----NRKKKLMVFFSSCMSVKFHYELLN 428
Score = 42 (19.8 bits), Expect = 2.6e-15, Sum P(2) = 2.6e-15
Identities = 11/39 (28%), Positives = 19/39 (48%)
Query: 245 LDEKKLPEDKSHVRFGSLESDVKEEVEHPSTTMRSTTED 283
L+ K PE+ ++ + GS E D E+ + + ED
Sbjct: 120 LETVKCPENGNNEKEGSAEEDSDEDGPQLPSGLTGAFED 158
>SGD|S000004903 [details] [associations]
symbol:HAS1 "ATP-dependent RNA helicase" species:4932
"Saccharomyces cerevisiae" [GO:0008186 "RNA-dependent ATPase
activity" evidence=IDA] [GO:0030687 "preribosome, large subunit
precursor" evidence=IDA] [GO:0003723 "RNA binding"
evidence=IEA;IDA] [GO:0005730 "nucleolus" evidence=IEA;IDA]
[GO:0005635 "nuclear envelope" evidence=IDA] [GO:0006364 "rRNA
processing" evidence=IEA;IMP] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0030686 "90S preribosome"
evidence=IDA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0042254 "ribosome
biogenesis" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 SGD:S000004903 GO:GO:0005524
GO:GO:0005635 GO:GO:0005730 GO:GO:0003723 EMBL:BK006946
GO:GO:0030687 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0030686 GO:GO:0006364 GO:GO:0004004 EMBL:X80836
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
InterPro:IPR025313 Pfam:PF13959 HOGENOM:HOG000268799 KO:K13179
OMA:KDGYRSY GeneTree:ENSGT00680000100037 OrthoDB:EOG4ZKNVS
PIR:S47451 RefSeq:NP_014017.1 ProteinModelPortal:Q03532 SMR:Q03532
DIP:DIP-4396N IntAct:Q03532 MINT:MINT-482816 STRING:Q03532
PaxDb:Q03532 PeptideAtlas:Q03532 EnsemblFungi:YMR290C GeneID:855335
KEGG:sce:YMR290C CYGD:YMR290c NextBio:979064 Genevestigator:Q03532
GermOnline:YMR290C Uniprot:Q03532
Length = 505
Score = 412 (150.1 bits), Expect = 2.3e-60, Sum P(2) = 2.3e-60
Identities = 97/214 (45%), Positives = 135/214 (63%)
Query: 35 ERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQS--YSPRIDRSS 92
E++GF T VQA+ IP +L+GR VL A TG+GKT+A+L P I L S + PR +
Sbjct: 58 EKMGFTTMTSVQARTIPPLLAGRDVLGAAKTGSGKTLAFLIPAIELLHSLKFKPR----N 113
Query: 93 GTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATP 152
GT +V+ PTREL LQ++ + +L+ FH G V+GG NR +E +L KG+++L+ATP
Sbjct: 114 GTGIIVITPTRELALQIFGVARELME-FHSQTFGIVIGGANRRQEAEKLMKGVNMLIATP 172
Query: 153 GRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILGSRNIGSIGEGNEVS 212
GRLLDHL++T F+ NL+ +I DEADRILE+GF E+ +I+ IL
Sbjct: 173 GRLLDHLQNTKGFVFKNLKALIIDEADRILEIGFEDEMRQIIKIL--------------P 218
Query: 213 NVKRQNLLLSATLNEKVNHLAKISLET-PVLIGL 245
N RQ++L SAT KV LA+ISL P+ I +
Sbjct: 219 NEDRQSMLFSATQTTKVEDLARISLRPGPLFINV 252
Score = 224 (83.9 bits), Expect = 2.3e-60, Sum P(2) = 2.3e-60
Identities = 47/105 (44%), Positives = 65/105 (61%)
Query: 358 FLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEA 417
++ LHG KQ+ R TF F ++ +L+ TDVAARGLD P V IIQ+D +
Sbjct: 311 YIDLPVLELHGKQKQQKRTNTFFEFCNAERGILICTDVAARGLDIPAVDWIIQFDPPDDP 370
Query: 418 TEYVHRVGRTARLGE-RGDSLLFLQPVEMDYLQDLEKHGVSLTEY 461
+Y+HRVGRTAR + +G SL+FL P E+ +L+ L+ V L EY
Sbjct: 371 RDYIHRVGRTARGTKGKGKSLMFLTPNELGFLRYLKASKVPLNEY 415
Score = 68 (29.0 bits), Expect = 3.8e-18, Sum P(2) = 3.8e-18
Identities = 31/127 (24%), Positives = 57/127 (44%)
Query: 221 LSATLNEKVNHLAKISLETPVLIGLDEKKLP-EDKSHVRFGSLESDVKEEVEHPSTT--- 276
L A + ++ + + +I E + + K LP ED+ + F + ++ E++ S
Sbjct: 190 LKALIIDEADRILEIGFEDEMRQII--KILPNEDRQSMLFSATQTTKVEDLARISLRPGP 247
Query: 277 --MRSTTEDFKLPAQ-LVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVD 333
+ E A L Q YV R +L S LK +K++VF S+C++V
Sbjct: 248 LFINVVPETDNSTADGLEQGYVVCDSDKRFLLLFSFLKR----NQKKKIIVFLSSCNSVK 303
Query: 334 FHYSLLS 340
++ LL+
Sbjct: 304 YYAELLN 310
>SGD|S000001732 [details] [associations]
symbol:DBP7 "Putative ATP-dependent RNA helicase of the
DEAD-box family" species:4932 "Saccharomyces cerevisiae"
[GO:0000463 "maturation of LSU-rRNA from tricistronic rRNA
transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IMP]
[GO:0005730 "nucleolus" evidence=IEA;IDA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006364 "rRNA processing" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0042254 "ribosome biogenesis"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 SGD:S000001732
GO:GO:0005524 GO:GO:0005730 EMBL:BK006944 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0000463
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
InterPro:IPR025313 Pfam:PF13959 KO:K14806 HOGENOM:HOG000268799
OMA:RAYATHI OrthoDB:EOG4W6S47 EMBL:Z28249 PIR:S38093
RefSeq:NP_012949.1 ProteinModelPortal:P36120 SMR:P36120
DIP:DIP-1833N IntAct:P36120 MINT:MINT-395227 STRING:P36120
PaxDb:P36120 PeptideAtlas:P36120 EnsemblFungi:YKR024C GeneID:853894
KEGG:sce:YKR024C CYGD:YKR024c GeneTree:ENSGT00550000075041
NextBio:975207 Genevestigator:P36120 GermOnline:YKR024C
Uniprot:P36120
Length = 742
Score = 448 (162.8 bits), Expect = 4.1e-60, Sum P(2) = 4.1e-60
Identities = 98/236 (41%), Positives = 149/236 (63%)
Query: 20 FSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVIL--SGRH-VLVNAATGTGKTVAYLAP 76
F+SLG+ S L L +++ + PT +Q QAIP I+ +G++ ++A TG+GKT++YL P
Sbjct: 145 FASLGVSSLLVSHLEQKMRIKKPTSIQKQAIPQIIGNAGKNDFFIHAQTGSGKTLSYLLP 204
Query: 77 IINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSK 136
II+ + + +DR+SG FALV+ PTREL Q+Y + L+ H++VP ++GGE +
Sbjct: 205 IISTILNMDTHVDRTSGAFALVIAPTRELASQIYHVCSTLVSCCHYLVPCLLIGGERKKS 264
Query: 137 EKARLRKGISILVATPGRLLDHLKHTSSF---LHTNLRWIIFDEADRILELGFGKEIEEI 193
EKARLRKG + ++ TPGR+LDHL++T L +LR+I+ DE D+++ELGF + I EI
Sbjct: 265 EKARLRKGCNFIIGTPGRVLDHLQNTKVIKEQLSQSLRYIVLDEGDKLMELGFDETISEI 324
Query: 194 LDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKK 249
+ I+ I S E K ++L SATL + VN L ++L+ LI KK
Sbjct: 325 IKIVHDIPINS--EKFPKLPHKLVHMLCSATLTDGVNRLRNVALKDYKLISNGTKK 378
Score = 197 (74.4 bits), Expect = 4.1e-60, Sum P(2) = 4.1e-60
Identities = 44/108 (40%), Positives = 65/108 (60%)
Query: 364 FRLHGNMKQEDRRTTFGAFKTEKKA------LLLSTDVAARGLDFPKVKCIIQYDSAGEA 417
++LHG++ Q+ R +T F + +A ++ TDVA+RGLD P V +I+ D
Sbjct: 485 YKLHGSLSQQMRTSTLQHFARDNEATKGKHLIMFCTDVASRGLDLPHVGSVIELDPPFAV 544
Query: 418 TEYVHRVGRTARLGERGDSLLFLQPVE----MDYLQDLEKHGVSLTEY 461
+++HRVGRTAR GE+G+SLLFL P E MDY+Q G L ++
Sbjct: 545 EDHLHRVGRTARAGEKGESLLFLLPGEEEKYMDYIQPYHPMGWELLKF 592
Score = 75 (31.5 bits), Expect = 2.8e-47, Sum P(2) = 2.8e-47
Identities = 33/124 (26%), Positives = 52/124 (41%)
Query: 287 PAQLVQRYVKVPCGSRLAVLLSILKHL---FDTEVSQ----KLVVFFSTCDAVDFHYSLL 339
P QL+QR VP RL L + L ++ F Q + +VF S D+V+FHY
Sbjct: 387 PDQLLQRITIVPPKLRLVTLAATLNNITKDFIASGQQSKTLRTIVFVSCSDSVEFHYDAF 446
Query: 340 SEFQWSPHSQPDMELKQLFLRCKT---------------FRLHGNMKQEDRRTTFGAFKT 384
S H + +L + T ++LHG++ Q+ R +T F
Sbjct: 447 SGSD-GHHKNLTGDSVRLLTKGNTMFPCFSDSRDPDVVIYKLHGSLSQQMRTSTLQHFAR 505
Query: 385 EKKA 388
+ +A
Sbjct: 506 DNEA 509
>POMBASE|SPBC21H7.04 [details] [associations]
symbol:dbp7 "ATP-dependent RNA helicase Dbp7
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISO] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=ISO;IDA] [GO:0006364 "rRNA processing" evidence=ISO]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 PomBase:SPBC21H7.04
GO:GO:0005524 GO:GO:0005730 EMBL:CU329671 GenomeReviews:CU329671_GR
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959 KO:K14806
HOGENOM:HOG000268799 OrthoDB:EOG4W6S47 PIR:T39930
RefSeq:NP_595929.1 ProteinModelPortal:O60173 STRING:O60173
EnsemblFungi:SPBC21H7.04.1 GeneID:2540518 KEGG:spo:SPBC21H7.04
NextBio:20801645 Uniprot:O60173
Length = 709
Score = 606 (218.4 bits), Expect = 4.5e-59, P = 4.5e-59
Identities = 157/478 (32%), Positives = 255/478 (53%)
Query: 8 KETVKEIFASCSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILS--GRHVLVNAAT 65
KE + +F+ + L + L D L ++ APT +Q+ +P +L+ + + A T
Sbjct: 128 KEASNAPIKTTNFAGVQLDTQLADHLNNKMNISAPTAIQSCCLPALLNTDDKDAFIEAQT 187
Query: 66 GTGKTVAYLAPIINHLQSYSPRID-RSSGTFALVLVPTRELCLQVYEILHKLLHR--FHW 122
G+GKT+AYL PI+ L + R+SG +A+++ PTRELC Q+Y + +KL + HW
Sbjct: 188 GSGKTLAYLLPIVQRLIRLPKNLHTRTSGIYAVIMAPTRELCQQIYNVANKLNNNPLSHW 247
Query: 123 IVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRIL 182
IV V+GGE + EKAR+RKG++IL+ TPGRL DHL++T + + +RW++ DE DR++
Sbjct: 248 IVSCNVIGGEKKKSEKARIRKGVNILIGTPGRLADHLENTEALDVSQVRWVVLDEGDRLM 307
Query: 183 ELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVL 242
++GF + + +IL L S++ SI + + ++ +L SAT+ + V L+ +L+ +
Sbjct: 308 DMGFEETLTKILSYLESQS--SIIKKDLSIPSRKVTMLCSATMKDTVKRLSDSALKDALY 365
Query: 243 IGLDEKKLPEDKSHVRFGSLESDVKEEVEHPSTTMRSTTEDF-KLPAQLVQRYVKVPCGS 301
L+S + EE T + + + P QL+QRYV VP
Sbjct: 366 -------------------LKSSIVEE----------TNDGYSQAPEQLLQRYVVVPPKL 396
Query: 302 RLAVLLSILK-H-------LFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDME 353
RL L+++L+ H + S + F + + P S+ D+
Sbjct: 397 RLVSLVALLRSHVRSYKKIIIFLSCSDSVDFHFEAFRCAINADEMEEAVKEKPDSEGDII 456
Query: 354 LKQLFLRC----KTFRLHGNMKQEDRRTTFGAFKTEKKA---LLLSTDVAARGLDFPKVK 406
LR +RLHG++ Q+ R +T F + + + +LL TDVAARGLD P V
Sbjct: 457 SNAPALRIDGKSNVYRLHGSLSQQIRTSTLNLFSSSEDSGSHILLCTDVAARGLDLPNVD 516
Query: 407 CIIQYDSAGEATEYVHRVGRTARLGERGDSLLFLQPVEMDYLQDLEKHGVS--LTEYP 462
++QYD+ +Y+HR+GRTAR G G +++FL P E +Y+ +L K VS + E P
Sbjct: 517 LVVQYDAPFSTDDYLHRIGRTARAGHNGAAIMFLLPKESEYI-NLLKSSVSANILEQP 573
>GENEDB_PFALCIPARUM|PFF1500c [details] [associations]
symbol:PFF1500c "DEAD/DEAH box ATP-dependent RNA
helicase, putative" species:5833 "Plasmodium falciparum"
[GO:0016070 "RNA metabolic process" evidence=ISS] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003723 GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
EMBL:AL844505 InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313
Pfam:PF13959 HOGENOM:HOG000268799 KO:K13179 OMA:KDGYRSY
RefSeq:XP_966291.1 ProteinModelPortal:C6KTE4
EnsemblProtists:PFF1500c:mRNA GeneID:3885813 KEGG:pfa:PFF1500c
EuPathDB:PlasmoDB:PF3D7_0630900 ProtClustDB:CLSZ2514457
Uniprot:C6KTE4
Length = 601
Score = 395 (144.1 bits), Expect = 1.6e-56, Sum P(2) = 1.6e-56
Identities = 99/255 (38%), Positives = 148/255 (58%)
Query: 12 KEIFAS-CSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKT 70
KE F S F L + L L+E L F T++QA+ IP LSG+ +L A TG+GKT
Sbjct: 141 KEHFYSELKFEELNICDALKKGLKE-LNFVTLTEIQAKCIPHFLSGKDILGAAKTGSGKT 199
Query: 71 VAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMG 130
+A+L P IN L Y+ + +GT L++ PTRELCLQ+Y++ K L ++ G ++G
Sbjct: 200 LAFLVPSINIL--YNIKFLPKNGTGVLIISPTRELCLQIYQVC-KDLCKYIPQTNGIIIG 256
Query: 131 GENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEI 190
G +R++EK + GI+IL+ATPGRLLDH+++T F++ NL +I DEADR+L++GF +EI
Sbjct: 257 GMSRNEEKKKFIHGINILIATPGRLLDHMQNTKEFIYKNLICLIIDEADRLLQIGFEEEI 316
Query: 191 EEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKL 250
I+ L KRQ L SAT KV L ++SL+ P+ I + K
Sbjct: 317 NLIIKRLPK---------------KRQTALFSATQTTKVESLIRLSLQKPIFIEVTTKIA 361
Query: 251 PEDKSHVRFGSLESD 265
++ + ++ D
Sbjct: 362 TVERLQQGYALVDED 376
Score = 210 (79.0 bits), Expect = 1.6e-56, Sum P(2) = 1.6e-56
Identities = 49/147 (33%), Positives = 81/147 (55%)
Query: 358 FLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEA 417
++ T+ +HG KQ R +F F K A+LL T+VAARGLD P V IIQYD ++
Sbjct: 413 YIDIPTYCIHGKKKQNKRLKSFHDFSAAKCAILLCTNVAARGLDIPNVNYIIQYDPPDDS 472
Query: 418 TEYVHRVGRTARLGE--RGDSLLFLQPVEMDYLQDLEKHGVSLTEYPLLKVLDSFPLYGQ 475
EY+HRVGRT R G+ G +++FL E+ +L L+ + + + ++ D L
Sbjct: 473 KEYIHRVGRTCR-GQDSNGSAIIFLMKHELKFLNYLKFYNIPINQF----AYDPNKLINI 527
Query: 476 KPRVKKFLTTESHPWILSLQNALESFI 502
+ ++ +T H ++ + A +S++
Sbjct: 528 QSHIQSIVTKNFHLHKMA-REAFKSYL 553
Score = 82 (33.9 bits), Expect = 1.1e-17, Sum P(2) = 1.1e-17
Identities = 32/119 (26%), Positives = 58/119 (48%)
Query: 227 EKVNHLAKISLETPVLIGLDEKKLPEDKSHVRFGS-----LESDVKEEVEHPSTTMRSTT 281
++ + L +I E I L K+LP+ + F + +ES ++ ++ P + TT
Sbjct: 302 DEADRLLQIGFEEE--INLIIKRLPKKRQTALFSATQTTKVESLIRLSLQKP-IFIEVTT 358
Query: 282 EDFKLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLS 340
+ +L Q Y V R +L + LK +S+K++VFF+ C +V F+ LL+
Sbjct: 359 K-IATVERLQQGYALVDEDKRFLLLFTFLKK----NMSKKIMVFFNNCMSVQFYNDLLN 412
>UNIPROTKB|C6KTE4 [details] [associations]
symbol:PFF1500c "DEAD/DEAH box ATP-dependent RNA helicase,
putative" species:36329 "Plasmodium falciparum 3D7" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003723 GO:GO:0016070 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 EMBL:AL844505 InterPro:IPR014014
PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
HOGENOM:HOG000268799 KO:K13179 OMA:KDGYRSY RefSeq:XP_966291.1
ProteinModelPortal:C6KTE4 EnsemblProtists:PFF1500c:mRNA
GeneID:3885813 KEGG:pfa:PFF1500c EuPathDB:PlasmoDB:PF3D7_0630900
ProtClustDB:CLSZ2514457 Uniprot:C6KTE4
Length = 601
Score = 395 (144.1 bits), Expect = 1.6e-56, Sum P(2) = 1.6e-56
Identities = 99/255 (38%), Positives = 148/255 (58%)
Query: 12 KEIFAS-CSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKT 70
KE F S F L + L L+E L F T++QA+ IP LSG+ +L A TG+GKT
Sbjct: 141 KEHFYSELKFEELNICDALKKGLKE-LNFVTLTEIQAKCIPHFLSGKDILGAAKTGSGKT 199
Query: 71 VAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMG 130
+A+L P IN L Y+ + +GT L++ PTRELCLQ+Y++ K L ++ G ++G
Sbjct: 200 LAFLVPSINIL--YNIKFLPKNGTGVLIISPTRELCLQIYQVC-KDLCKYIPQTNGIIIG 256
Query: 131 GENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEI 190
G +R++EK + GI+IL+ATPGRLLDH+++T F++ NL +I DEADR+L++GF +EI
Sbjct: 257 GMSRNEEKKKFIHGINILIATPGRLLDHMQNTKEFIYKNLICLIIDEADRLLQIGFEEEI 316
Query: 191 EEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKL 250
I+ L KRQ L SAT KV L ++SL+ P+ I + K
Sbjct: 317 NLIIKRLPK---------------KRQTALFSATQTTKVESLIRLSLQKPIFIEVTTKIA 361
Query: 251 PEDKSHVRFGSLESD 265
++ + ++ D
Sbjct: 362 TVERLQQGYALVDED 376
Score = 210 (79.0 bits), Expect = 1.6e-56, Sum P(2) = 1.6e-56
Identities = 49/147 (33%), Positives = 81/147 (55%)
Query: 358 FLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEA 417
++ T+ +HG KQ R +F F K A+LL T+VAARGLD P V IIQYD ++
Sbjct: 413 YIDIPTYCIHGKKKQNKRLKSFHDFSAAKCAILLCTNVAARGLDIPNVNYIIQYDPPDDS 472
Query: 418 TEYVHRVGRTARLGE--RGDSLLFLQPVEMDYLQDLEKHGVSLTEYPLLKVLDSFPLYGQ 475
EY+HRVGRT R G+ G +++FL E+ +L L+ + + + ++ D L
Sbjct: 473 KEYIHRVGRTCR-GQDSNGSAIIFLMKHELKFLNYLKFYNIPINQF----AYDPNKLINI 527
Query: 476 KPRVKKFLTTESHPWILSLQNALESFI 502
+ ++ +T H ++ + A +S++
Sbjct: 528 QSHIQSIVTKNFHLHKMA-REAFKSYL 553
Score = 82 (33.9 bits), Expect = 1.1e-17, Sum P(2) = 1.1e-17
Identities = 32/119 (26%), Positives = 58/119 (48%)
Query: 227 EKVNHLAKISLETPVLIGLDEKKLPEDKSHVRFGS-----LESDVKEEVEHPSTTMRSTT 281
++ + L +I E I L K+LP+ + F + +ES ++ ++ P + TT
Sbjct: 302 DEADRLLQIGFEEE--INLIIKRLPKKRQTALFSATQTTKVESLIRLSLQKP-IFIEVTT 358
Query: 282 EDFKLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLS 340
+ +L Q Y V R +L + LK +S+K++VFF+ C +V F+ LL+
Sbjct: 359 K-IATVERLQQGYALVDEDKRFLLLFTFLKK----NMSKKIMVFFNNCMSVQFYNDLLN 412
>UNIPROTKB|F8WAJ0 [details] [associations]
symbol:DDX31 "Probable ATP-dependent RNA helicase DDX31"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
EMBL:AL354735 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
InterPro:IPR025313 Pfam:PF13959 EMBL:AL160165 HGNC:HGNC:16715
IPI:IPI01010837 ProteinModelPortal:F8WAJ0 SMR:F8WAJ0
Ensembl:ENST00000438527 ArrayExpress:F8WAJ0 Bgee:F8WAJ0
Uniprot:F8WAJ0
Length = 722
Score = 580 (209.2 bits), Expect = 2.5e-56, P = 2.5e-56
Identities = 126/252 (50%), Positives = 167/252 (66%)
Query: 8 KETVKEIFASCSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGT 67
K+ +++F S +F LGLH L + L + T VQ Q+IPV+L GR LV + TG+
Sbjct: 91 KQVQEKVFTSAAFHELGLHPHLISTINTVLKMSSMTSVQKQSIPVLLEGRDALVRSQTGS 150
Query: 68 GKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGY 127
GKT+AY P++ LQ+ +I RS G +ALVLVPTREL LQ ++ + KLL F WIVPG
Sbjct: 151 GKTLAYCIPVVQSLQAMESKIQRSDGPYALVLVPTRELALQSFDTVQKLLKPFTWIVPGV 210
Query: 128 VMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFG 187
+MGGE R EKARLRKGI+IL++TPGRL+DH+K T + + LRW++FDEADRIL+LGF
Sbjct: 211 LMGGEKRKSEKARLRKGINILISTPGRLVDHIKSTKNIHFSRLRWLVFDEADRILDLGFE 270
Query: 188 KEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDE 247
K+I IL+ + + E KRQN+LLSATL E V LA ISL PV I + +
Sbjct: 271 KDITVILNAVNA----------ECQ--KRQNVLLSATLTEGVTRLADISLHDPVSISVLD 318
Query: 248 K---KL-PEDKS 255
K +L P+DK+
Sbjct: 319 KSHDQLNPKDKA 330
Score = 462 (167.7 bits), Expect = 2.3e-43, P = 2.3e-43
Identities = 110/280 (39%), Positives = 151/280 (53%)
Query: 189 EIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEK 248
E + ILD+ ++I I KRQN+LLSATL E V LA ISL PV I +
Sbjct: 260 EADRILDLGFEKDITVILNAVNAECQKRQNVLLSATLTEGVTRLADISLHDPVSISV--- 316
Query: 249 KLPEDKSHVRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCGSRLAVLLS 308
DKSH + + V+E P+ + F +P L Q VP RL L +
Sbjct: 317 ---LDKSHDQLNPKDKAVQEVCPPPAG---DKLDSFAIPESLKQHVTVVPSKLRLVCLAA 370
Query: 309 ILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDM-ELKQLFLRCKTFRLH 367
+ E QK+VVFFS+C+ V+FHYSL + S P +L +R K RLH
Sbjct: 371 FILQKCKFEEDQKMVVFFSSCELVEFHYSLFLQTLLSSSGAPASGQLPSASMRLKFLRLH 430
Query: 368 GNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRVGRT 427
G M+QE+R F F ++ +LL TDVAARGLD P+V I+QY++ EY+HR+GRT
Sbjct: 431 GGMEQEERTAVFQEFSHSRRGVLLCTDVAARGLDLPQVTWIVQYNAPSSPAEYIHRIGRT 490
Query: 428 ARLGERGDSLLFLQPVEMDYLQDLEKHGVSLTEYPLLKVL 467
AR+G G SLL L P E +Y+ L H ++++E + +L
Sbjct: 491 ARIGCHGSSLLILAPSEAEYVNSLASHKINVSEIKMEDIL 530
>TAIR|locus:2086909 [details] [associations]
symbol:AT3G18600 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0005730
"nucleolus" evidence=IDA] [GO:0005829 "cytosol" evidence=RCA]
[GO:0001510 "RNA methylation" evidence=RCA] [GO:0009220 "pyrimidine
ribonucleotide biosynthetic process" evidence=RCA] [GO:0009909
"regulation of flower development" evidence=RCA] [GO:0034968
"histone lysine methylation" evidence=RCA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0005730 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
EMBL:AP001303 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
InterPro:IPR025313 Pfam:PF13959 HOGENOM:HOG000268799 KO:K13179
OMA:KDGYRSY EMBL:AY070052 EMBL:AY096431 IPI:IPI00544206
RefSeq:NP_188490.1 UniGene:At.28418 ProteinModelPortal:Q9LIH9
SMR:Q9LIH9 STRING:Q9LIH9 PaxDb:Q9LIH9 PRIDE:Q9LIH9 DNASU:821391
EnsemblPlants:AT3G18600.1 GeneID:821391 KEGG:ath:AT3G18600
GeneFarm:1030 TAIR:At3g18600 InParanoid:Q9LIH9 PhylomeDB:Q9LIH9
ProtClustDB:CLSN2914752 Genevestigator:Q9LIH9 GermOnline:AT3G18600
Uniprot:Q9LIH9
Length = 568
Score = 377 (137.8 bits), Expect = 4.0e-56, Sum P(2) = 4.0e-56
Identities = 91/238 (38%), Positives = 140/238 (58%)
Query: 12 KEIFASCSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTV 71
K I + +F SL L ++E +GF+ T++QA +I +L G+ VL A TG+GKT+
Sbjct: 83 KGIMTNVTFDSLDLSEQTSIAIKE-MGFQYMTQIQAGSIQPLLEGKDVLGAARTGSGKTL 141
Query: 72 AYLAPIINHL--QSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVM 129
A+L P + L + +SPR +GT +V+ PTREL +Q + +LL + H V+
Sbjct: 142 AFLIPAVELLFKERFSPR----NGTGVIVICPTRELAIQTKNVAEELL-KHHSQTVSMVI 196
Query: 130 GGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKE 189
GG NR E R+ G ++++ATPGRLLDHL++T +F++ +L+ ++ DEADRILE F ++
Sbjct: 197 GGNNRRSEAQRIASGSNLVIATPGRLLDHLQNTKAFIYKHLKCLVIDEADRILEENFEED 256
Query: 190 IEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDE 247
+ +IL IL RQ L SAT KV LA++SL +PV + +D+
Sbjct: 257 MNKILKILPKT---------------RQTALFSATQTSKVKDLARVSLTSPVHVDVDD 299
Score = 223 (83.6 bits), Expect = 4.0e-56, Sum P(2) = 4.0e-56
Identities = 49/96 (51%), Positives = 61/96 (63%)
Query: 366 LHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRVG 425
+HG M Q R TF F KK +LL TDVAARGLD P V IIQYD + TEY+HRVG
Sbjct: 364 IHGGMDQNRRTKTFFDFMKAKKGILLCTDVAARGLDIPSVDWIIQYDPPDKPTEYIHRVG 423
Query: 426 RTAR-LGERGDSLLFLQPVEMDYLQDLEKHGVSLTE 460
RTAR G +G +LL L P E+ +++ L+ V + E
Sbjct: 424 RTARGEGAKGKALLVLIPEELQFIRYLKAAKVPVKE 459
Score = 99 (39.9 bits), Expect = 5.0e-21, Sum P(2) = 5.0e-21
Identities = 37/122 (30%), Positives = 57/122 (46%)
Query: 220 LLSATLNEKVNHLAKISLET--PVLIGLDEKKLPEDKSHVRFGSLESDVKEEVEHPSTTM 277
+L E +N + KI +T L + +D + V SL S V +V+
Sbjct: 248 ILEENFEEDMNKILKILPKTRQTALFSATQTSKVKDLARV---SLTSPVHVDVDDGR--- 301
Query: 278 RSTTEDFKLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYS 337
R T + L Q Y VP RL +L+S LK +++K++VFFSTC +V FH
Sbjct: 302 RKVTNE-----GLEQGYCVVPSKQRLILLISFLKK----NLNKKIMVFFSTCKSVQFHTE 352
Query: 338 LL 339
++
Sbjct: 353 IM 354
>UNIPROTKB|Q9H8H2 [details] [associations]
symbol:DDX31 "Probable ATP-dependent RNA helicase DDX31"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
EMBL:AL354735 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959 KO:K14806
EMBL:AF427339 EMBL:AF335567 EMBL:AF335568 EMBL:AF335569
EMBL:AK023695 EMBL:AK027002 EMBL:AK027484 EMBL:AL160165
EMBL:BC012726 IPI:IPI00043990 IPI:IPI00291296 IPI:IPI00552374
IPI:IPI00552716 RefSeq:NP_073616.6 RefSeq:NP_619526.1
UniGene:Hs.660767 ProteinModelPortal:Q9H8H2 SMR:Q9H8H2
IntAct:Q9H8H2 PhosphoSite:Q9H8H2 DMDM:71153334 SWISS-2DPAGE:Q9H8H2
PaxDb:Q9H8H2 PRIDE:Q9H8H2 DNASU:64794 Ensembl:ENST00000310532
Ensembl:ENST00000372153 Ensembl:ENST00000372155
Ensembl:ENST00000372159 GeneID:64794 KEGG:hsa:64794 UCSC:uc004cbq.1
UCSC:uc004cbs.2 UCSC:uc010mzu.1 CTD:64794 GeneCards:GC09M135468
HGNC:HGNC:16715 HPA:HPA020891 neXtProt:NX_Q9H8H2 PharmGKB:PA27218
HOVERGEN:HBG103793 InParanoid:Q9H8H2 OMA:ARIGCHG OrthoDB:EOG42V8FK
PhylomeDB:Q9H8H2 GenomeRNAi:64794 NextBio:66862 ArrayExpress:Q9H8H2
Bgee:Q9H8H2 CleanEx:HS_DDX31 Genevestigator:Q9H8H2
GermOnline:ENSG00000125485 Uniprot:Q9H8H2
Length = 851
Score = 580 (209.2 bits), Expect = 4.9e-56, P = 4.9e-56
Identities = 126/252 (50%), Positives = 167/252 (66%)
Query: 8 KETVKEIFASCSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGT 67
K+ +++F S +F LGLH L + L + T VQ Q+IPV+L GR LV + TG+
Sbjct: 220 KQVQEKVFTSAAFHELGLHPHLISTINTVLKMSSMTSVQKQSIPVLLEGRDALVRSQTGS 279
Query: 68 GKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGY 127
GKT+AY P++ LQ+ +I RS G +ALVLVPTREL LQ ++ + KLL F WIVPG
Sbjct: 280 GKTLAYCIPVVQSLQAMESKIQRSDGPYALVLVPTRELALQSFDTVQKLLKPFTWIVPGV 339
Query: 128 VMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFG 187
+MGGE R EKARLRKGI+IL++TPGRL+DH+K T + + LRW++FDEADRIL+LGF
Sbjct: 340 LMGGEKRKSEKARLRKGINILISTPGRLVDHIKSTKNIHFSRLRWLVFDEADRILDLGFE 399
Query: 188 KEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDE 247
K+I IL+ + + E KRQN+LLSATL E V LA ISL PV I + +
Sbjct: 400 KDITVILNAVNA----------ECQ--KRQNVLLSATLTEGVTRLADISLHDPVSISVLD 447
Query: 248 K---KL-PEDKS 255
K +L P+DK+
Sbjct: 448 KSHDQLNPKDKA 459
Score = 462 (167.7 bits), Expect = 1.3e-44, Sum P(2) = 1.3e-44
Identities = 110/280 (39%), Positives = 151/280 (53%)
Query: 189 EIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEK 248
E + ILD+ ++I I KRQN+LLSATL E V LA ISL PV I +
Sbjct: 389 EADRILDLGFEKDITVILNAVNAECQKRQNVLLSATLTEGVTRLADISLHDPVSISV--- 445
Query: 249 KLPEDKSHVRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCGSRLAVLLS 308
DKSH + + V+E P+ + F +P L Q VP RL L +
Sbjct: 446 ---LDKSHDQLNPKDKAVQEVCPPPAG---DKLDSFAIPESLKQHVTVVPSKLRLVCLAA 499
Query: 309 ILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDM-ELKQLFLRCKTFRLH 367
+ E QK+VVFFS+C+ V+FHYSL + S P +L +R K RLH
Sbjct: 500 FILQKCKFEEDQKMVVFFSSCELVEFHYSLFLQTLLSSSGAPASGQLPSASMRLKFLRLH 559
Query: 368 GNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRVGRT 427
G M+QE+R F F ++ +LL TDVAARGLD P+V I+QY++ EY+HR+GRT
Sbjct: 560 GGMEQEERTAVFQEFSHSRRGVLLCTDVAARGLDLPQVTWIVQYNAPSSPAEYIHRIGRT 619
Query: 428 ARLGERGDSLLFLQPVEMDYLQDLEKHGVSLTEYPLLKVL 467
AR+G G SLL L P E +Y+ L H ++++E + +L
Sbjct: 620 ARIGCHGSSLLILAPSEAEYVNSLASHKINVSEIKMEDIL 659
Score = 40 (19.1 bits), Expect = 1.3e-44, Sum P(2) = 1.3e-44
Identities = 14/46 (30%), Positives = 20/46 (43%)
Query: 120 FHWIVPGYVMGGENRSKEKARLRKGI-SILVATPGRLLDHLKHTSS 164
+ W G GG S +R+ +G+ V PG LL H T +
Sbjct: 63 YSWSRSGPGRGGGAGS---SRVPRGVPGPAVCAPGSLLHHASPTQT 105
>UNIPROTKB|F1N5H8 [details] [associations]
symbol:DDX31 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
GeneTree:ENSGT00550000075041 OMA:ARIGCHG EMBL:DAAA02032283
IPI:IPI00837660 UniGene:Bt.35580 ProteinModelPortal:F1N5H8
PRIDE:F1N5H8 Ensembl:ENSBTAT00000042916 Uniprot:F1N5H8
Length = 736
Score = 551 (199.0 bits), Expect = 3.0e-53, P = 3.0e-53
Identities = 119/241 (49%), Positives = 157/241 (65%)
Query: 8 KETVKEIFASCSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGT 67
K+ +++F S +F +L LH L + L + T VQ Q+IPV+L GR LV + TG+
Sbjct: 122 KQVQEKVFTSDAFQALDLHPHLISTINTVLKMSSMTSVQKQSIPVLLEGRDALVRSQTGS 181
Query: 68 GKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGY 127
GKT+AY P++ LQ+ +I R G +AL+LVPTREL LQ ++ + KLL F WIVPG
Sbjct: 182 GKTLAYCIPVVQSLQAMQSKIQRGDGPYALILVPTRELALQSFDTVQKLLKPFTWIVPGV 241
Query: 128 VMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFG 187
+MGGE R EKARLRKGI+IL++TPGRL+DH+K T + +RW+I DEADRIL+LGF
Sbjct: 242 LMGGEKRKSEKARLRKGINILISTPGRLVDHIKSTKNIHFRQIRWLILDEADRILDLGFE 301
Query: 188 KEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIG-LD 246
K++ IL+ + + E E RQN+LLSATL E V LA ISL PV I LD
Sbjct: 302 KDLTVILNAVNA-------ECQE-----RQNVLLSATLTEGVARLADISLHDPVSISVLD 349
Query: 247 E 247
E
Sbjct: 350 E 350
Score = 420 (152.9 bits), Expect = 1.1e-38, P = 1.1e-38
Identities = 106/281 (37%), Positives = 148/281 (52%)
Query: 189 EIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEK 248
E + ILD+ +++ I +RQN+LLSATL E V LA ISL PV I +
Sbjct: 291 EADRILDLGFEKDLTVILNAVNAECQERQNVLLSATLTEGVARLADISLHDPVSISV--- 347
Query: 249 KLPEDKSHVRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCGSRLAVLLS 308
D+SH S ES+ E P T + F +PA L Q V VP RL L +
Sbjct: 348 ---LDESH-DVSSPESEAFLEASPPQAT--DELDGFAIPAGLEQHVVVVPSKLRLVCLAA 401
Query: 309 ILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSE--FQWSPHSQPDMELKQLFLRCKTFRL 366
+ E QK++VFFS+C+ V+FHY+L + S P+ L K RL
Sbjct: 402 FILQKCKFERDQKVIVFFSSCELVEFHYTLFLQTLLSGSGALAPE-HLPSTSTPLKFLRL 460
Query: 367 HGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRVGR 426
H ++QE+R F F K +L TD+AARGLD P+V I+QY++ EY+HR+GR
Sbjct: 461 HSALEQEERTAVFQDFTHSKTGILFCTDIAARGLDLPQVTWIVQYNAPSSPAEYIHRIGR 520
Query: 427 TARLGERGDSLLFLQPVEMDYLQDLEKHGVSLTEYPLLKVL 467
TAR+G G SLL L P E +Y+ L H ++++E + +L
Sbjct: 521 TARIGCHGSSLLVLAPSEAEYVNSLASHKINVSEVKMEDIL 561
>UNIPROTKB|F1S0U0 [details] [associations]
symbol:DDX31 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
GeneTree:ENSGT00550000075041 OMA:ARIGCHG EMBL:CU326339
Ensembl:ENSSSCT00000006300 Uniprot:F1S0U0
Length = 784
Score = 544 (196.6 bits), Expect = 2.3e-52, P = 2.3e-52
Identities = 117/250 (46%), Positives = 159/250 (63%)
Query: 8 KETVKEIFASCSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGT 67
K+ + +F S +F +L LH L + L + T +Q Q+IPV+L GR LV + TG+
Sbjct: 176 KQRQESVFTSDAFQALDLHPHLISTINTVLKMSSLTSIQKQSIPVLLEGRDALVRSQTGS 235
Query: 68 -GKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPG 126
GKT+AY P++ LQ+ P+I R G +AL+LVPTREL LQ ++ + KLL F WIVPG
Sbjct: 236 EGKTLAYCIPMVQSLQAVKPKIQRGDGPYALILVPTRELALQSFDTVQKLLKPFTWIVPG 295
Query: 127 YVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGF 186
+MGGE R EKARLRKGI+IL++TPGRL+DH+K T + +RW+I DEADR+L+LGF
Sbjct: 296 VLMGGEKRKSEKARLRKGINILISTPGRLVDHIKSTKNMRFCRIRWLILDEADRLLDLGF 355
Query: 187 GKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLD 246
K+I IL+ + + +RQN+LLSATL E V LA ISL PV I +
Sbjct: 356 EKDIALILNAVNAER------------PERQNVLLSATLTEGVTRLADISLHEPVRISVL 403
Query: 247 EKKLPEDKSH 256
E +D+ H
Sbjct: 404 EGS--QDQMH 411
Score = 415 (151.1 bits), Expect = 5.2e-38, P = 5.2e-38
Identities = 103/280 (36%), Positives = 146/280 (52%)
Query: 189 EIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEK 248
E + +LD+ ++I I +RQN+LLSATL E V LA ISL PV I + E
Sbjct: 346 EADRLLDLGFEKDIALILNAVNAERPERQNVLLSATLTEGVTRLADISLHEPVRISVLEG 405
Query: 249 KLPEDKSHVRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCGSRLAVLLS 308
+D+ H + ++ P+ + S + F +P L Q VP RL L +
Sbjct: 406 S--QDQMHPKSRAILG-----ASPPAAS--SELDGFAIPVGLEQHVALVPSKLRLVSLAA 456
Query: 309 ILKHLFDTEVSQKLVVFFSTCDAVDFHYSL-LSEFQWSPHSQPDMELKQLFLRCKTFRLH 367
+ E QK++VFFS+C+ V+FH+SL L + L RLH
Sbjct: 457 FILQKCKFEPDQKMIVFFSSCELVEFHHSLFLQTLLGGSGALAPGRLPSASPPLTFLRLH 516
Query: 368 GNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRVGRT 427
G+M+QE+R F F K +LL TDVAARGLD P+V I+QY + EYVHR+GRT
Sbjct: 517 GDMEQEERTAVFQEFSRSKAGVLLCTDVAARGLDLPQVTWIVQYTAPSSPAEYVHRIGRT 576
Query: 428 ARLGERGDSLLFLQPVEMDYLQDLEKHGVSLTEYPLLKVL 467
AR+G +G SLL L P E +Y+ L H + ++E + +L
Sbjct: 577 ARIGFQGSSLLILAPSEAEYVNSLASHKIKVSEMKMEDIL 616
>UNIPROTKB|F1NM06 [details] [associations]
symbol:DDX31 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
GeneTree:ENSGT00550000075041 OMA:ARIGCHG EMBL:AADN02026504
EMBL:AADN02026505 EMBL:AADN02026506 EMBL:AADN02026507
EMBL:AADN02026508 EMBL:AADN02026509 EMBL:AADN02026510
IPI:IPI00573288 ProteinModelPortal:F1NM06
Ensembl:ENSGALT00000005588 Uniprot:F1NM06
Length = 690
Score = 535 (193.4 bits), Expect = 1.5e-51, P = 1.5e-51
Identities = 120/244 (49%), Positives = 154/244 (63%)
Query: 6 KKKETVKE-IFASCSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAA 64
K + V+E +F + SFS L LH L + L + T VQ Q IPV+L G+ LV +
Sbjct: 83 KAVQQVQENVFTTDSFSQLDLHPHLIATITTVLKICSMTSVQKQTIPVLLQGKDALVRSQ 142
Query: 65 TGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIV 124
TG+GKT+AY P++ LQ +I RS G +ALVLVPTREL LQ ++ + KLL F WIV
Sbjct: 143 TGSGKTLAYGIPLVQSLQGMQSKIQRSDGPYALVLVPTRELALQTFDTIQKLLKPFTWIV 202
Query: 125 PGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILEL 184
PG +MGGE R EKARLRKGI+IL++TPGRL+DH+K T +W+I DEADRIL+L
Sbjct: 203 PGVLMGGEKRKSEKARLRKGINILISTPGRLVDHIKSTECIHFRRTQWLIIDEADRILDL 262
Query: 185 GFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIG 244
GF K++ IL+ L + E RQN+LLSATL E V LA ISL P+ I
Sbjct: 263 GFEKDVTVILNALNAER--------ET----RQNVLLSATLTEGVTRLADISLNDPIRIS 310
Query: 245 L-DE 247
+ DE
Sbjct: 311 IADE 314
Score = 451 (163.8 bits), Expect = 2.8e-42, P = 2.8e-42
Identities = 106/282 (37%), Positives = 158/282 (56%)
Query: 189 EIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEK 248
E + ILD+ +++ I RQN+LLSATL E V LA ISL P+ I + ++
Sbjct: 255 EADRILDLGFEKDVTVILNALNAERETRQNVLLSATLTEGVTRLADISLNDPIRISIADE 314
Query: 249 KLPEDKSHVRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCGSRLAVLLS 308
+R SL+ ++ E E S++ R E+F +P +L Q ++ VP RL L +
Sbjct: 315 --------IR-ESLKPALQTEKEANSSSNRMDQENFAVPEKLKQYFMMVPSKLRLVTLAA 365
Query: 309 ILKHLFDTEVSQKLVVFFSTCDAVDFHYSLL-SEFQWSPHSQPDMELKQLFLRCKTFRLH 367
+ E K+++FFS+C+ V+FHY LL + S+ ++ + RLH
Sbjct: 366 FVLEKCKYEKQHKMIIFFSSCEQVEFHYELLVNVLSGELESEQPKRSSVSSVQLQFLRLH 425
Query: 368 GNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRVGRT 427
GNM+QE+R F F K +LL TDVAARGLD P+V I+QY++ EY+HR+GRT
Sbjct: 426 GNMEQEERTEVFQEFLKSKTGILLCTDVAARGLDLPQVTWIVQYNAPASPAEYIHRIGRT 485
Query: 428 ARLGERGDSLLFLQPVEMDYLQDLEKHGVSLTEYPLLKVLDS 469
AR+G G+SLL L P E +Y+ L H ++++E + KVL S
Sbjct: 486 ARIGCHGNSLLVLAPSEAEYVSLLASHKINVSEIKMEKVLSS 527
>CGD|CAL0000864 [details] [associations]
symbol:DRS1 species:5476 "Candida albicans" [GO:0035690
"cellular response to drug" evidence=IMP] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0030687 "preribosome, large subunit precursor"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 CGD:CAL0000864 GO:GO:0005524
GO:GO:0005730 GO:GO:0042254 GO:GO:0003723 GO:GO:0035690
EMBL:AACQ01000032 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K13181 RefSeq:XP_719395.1 ProteinModelPortal:Q5ACK7
STRING:Q5ACK7 GeneID:3639045 KEGG:cal:CaO19.7635 Uniprot:Q5ACK7
Length = 613
Score = 379 (138.5 bits), Expect = 6.7e-51, Sum P(2) = 6.7e-51
Identities = 90/231 (38%), Positives = 136/231 (58%)
Query: 19 SFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPII 78
SF +L L + + E L F PT +Q+ +IP+ L G+ ++ A TG+GKT AY+ PII
Sbjct: 131 SFQTLQLSRPVLKGIAE-LKFTKPTPIQSASIPIALLGKDIVAGAQTGSGKTGAYMIPII 189
Query: 79 NHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEK 138
L Y P S+ T ++L PTREL LQVYE KL H + + G +GG N +++
Sbjct: 190 ERLL-YKP----STSTKVIILTPTRELALQVYEFGKKLSHHVNNLNIGLAVGGLNLRQQE 244
Query: 139 ARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILG 198
+L+ I++ATPGRL+DH++++ SF +++ ++ DEADR+LE GF E+ EIL ++
Sbjct: 245 EQLKTRPDIVIATPGRLIDHIRNSPSFSVQDIQVLVIDEADRMLEEGFQDELTEILSLIP 304
Query: 199 SRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKK 249
KRQ LL SAT+N ++ L ++SL+ PV I +D K
Sbjct: 305 KH--------------KRQTLLFSATMNTRIQDLIQLSLQKPVRIMIDPPK 341
Score = 176 (67.0 bits), Expect = 6.7e-51, Sum P(2) = 6.7e-51
Identities = 37/82 (45%), Positives = 49/82 (59%)
Query: 359 LRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEAT 418
L K LHG + QE R FK+ + +L+ TD+AARGLD PK++ +I YD
Sbjct: 396 LGLKVSELHGALTQEQRLQNVKNFKSLEVPVLICTDLAARGLDIPKIELVINYDMPKTFE 455
Query: 419 EYVHRVGRTARLGERGDSLLFL 440
Y+HRVGRTAR G G S+ F+
Sbjct: 456 IYLHRVGRTARAGRDGTSITFV 477
>UNIPROTKB|Q5ACK7 [details] [associations]
symbol:DRS1 "ATP-dependent RNA helicase DRS1"
species:237561 "Candida albicans SC5314" [GO:0035690 "cellular
response to drug" evidence=IMP] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 CGD:CAL0000864
GO:GO:0005524 GO:GO:0005730 GO:GO:0042254 GO:GO:0003723
GO:GO:0035690 EMBL:AACQ01000032 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K13181 RefSeq:XP_719395.1
ProteinModelPortal:Q5ACK7 STRING:Q5ACK7 GeneID:3639045
KEGG:cal:CaO19.7635 Uniprot:Q5ACK7
Length = 613
Score = 379 (138.5 bits), Expect = 6.7e-51, Sum P(2) = 6.7e-51
Identities = 90/231 (38%), Positives = 136/231 (58%)
Query: 19 SFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPII 78
SF +L L + + E L F PT +Q+ +IP+ L G+ ++ A TG+GKT AY+ PII
Sbjct: 131 SFQTLQLSRPVLKGIAE-LKFTKPTPIQSASIPIALLGKDIVAGAQTGSGKTGAYMIPII 189
Query: 79 NHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEK 138
L Y P S+ T ++L PTREL LQVYE KL H + + G +GG N +++
Sbjct: 190 ERLL-YKP----STSTKVIILTPTRELALQVYEFGKKLSHHVNNLNIGLAVGGLNLRQQE 244
Query: 139 ARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILG 198
+L+ I++ATPGRL+DH++++ SF +++ ++ DEADR+LE GF E+ EIL ++
Sbjct: 245 EQLKTRPDIVIATPGRLIDHIRNSPSFSVQDIQVLVIDEADRMLEEGFQDELTEILSLIP 304
Query: 199 SRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKK 249
KRQ LL SAT+N ++ L ++SL+ PV I +D K
Sbjct: 305 KH--------------KRQTLLFSATMNTRIQDLIQLSLQKPVRIMIDPPK 341
Score = 176 (67.0 bits), Expect = 6.7e-51, Sum P(2) = 6.7e-51
Identities = 37/82 (45%), Positives = 49/82 (59%)
Query: 359 LRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEAT 418
L K LHG + QE R FK+ + +L+ TD+AARGLD PK++ +I YD
Sbjct: 396 LGLKVSELHGALTQEQRLQNVKNFKSLEVPVLICTDLAARGLDIPKIELVINYDMPKTFE 455
Query: 419 EYVHRVGRTARLGERGDSLLFL 440
Y+HRVGRTAR G G S+ F+
Sbjct: 456 IYLHRVGRTARAGRDGTSITFV 477
>UNIPROTKB|Q5ZLB0 [details] [associations]
symbol:DDX47 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA]
[GO:0006915 "apoptotic process" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0006915
GO:GO:0005730 GO:GO:0008380 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268802 GeneTree:ENSGT00670000098028 CTD:51202
HOVERGEN:HBG100512 KO:K14777 OMA:IFIPSKF OrthoDB:EOG4TXBRS
EMBL:AADN02006011 EMBL:AADN02006010 EMBL:AJ719824 IPI:IPI00584081
RefSeq:NP_001007854.1 UniGene:Gga.13941 SMR:Q5ZLB0 STRING:Q5ZLB0
Ensembl:ENSGALT00000019245 GeneID:417959 KEGG:gga:417959
InParanoid:Q5ZLB0 NextBio:20821184 Uniprot:Q5ZLB0
Length = 453
Score = 336 (123.3 bits), Expect = 6.4e-50, Sum P(2) = 6.4e-50
Identities = 88/260 (33%), Positives = 138/260 (53%)
Query: 9 ETVKEIFASCSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTG 68
E V + + SF LG+ LC+ ++LG++ PTK+Q +AIPV L GR ++ A TG+G
Sbjct: 16 EEVPVVEEARSFKDLGVTDVLCEAC-DQLGWKVPTKIQVEAIPVALQGRDIIGLAETGSG 74
Query: 69 KTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYV 128
KT A+ PI+ L +D FALVL PTREL Q+ E L + +
Sbjct: 75 KTGAFALPILQAL------LDAPQRLFALVLTPTRELAFQISEQFEALGSSIG-VHSAVI 127
Query: 129 MGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGK 188
+GG + + L K I++ATPGRL+DHL++T F L++++ DEADRIL + F
Sbjct: 128 VGGIDSMSQSLALAKKPHIIIATPGRLVDHLENTKGFNLRALKFLVMDEADRILNMDFET 187
Query: 189 EIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEK 248
E+++IL ++ R+ R+ L SAT+ ++V L + +L+ PV + K
Sbjct: 188 EVDKILKVI-PRD--------------RKTFLFSATMTKQVQKLQRAALKNPVKCAVSSK 232
Query: 249 KLPEDKSHVRFGSLESDVKE 268
+K + + S K+
Sbjct: 233 YQTVEKLQQYYIFIPSKFKD 252
Score = 205 (77.2 bits), Expect = 6.4e-50, Sum P(2) = 6.4e-50
Identities = 41/100 (41%), Positives = 61/100 (61%)
Query: 366 LHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRVG 425
LHG M Q R + FK + +++LL+TDVA+RGLD P V +I +D + +Y+HRVG
Sbjct: 294 LHGQMSQNKRLGSLNKFKAKARSILLATDVASRGLDIPHVDVVINFDIPTHSKDYIHRVG 353
Query: 426 RTARLGERGDSLLFLQPVEMDYLQDLEKH--GVSLTEYPL 463
RTAR G G S+ F+ +++ Q +E H G L +P+
Sbjct: 354 RTARAGRSGKSITFVTQYDVELFQRIE-HLIGKKLPAFPM 392
>UNIPROTKB|Q29S22 [details] [associations]
symbol:DDX47 "Probable ATP-dependent RNA helicase DDX47"
species:9913 "Bos taurus" [GO:0005730 "nucleolus" evidence=ISS]
[GO:0008380 "RNA splicing" evidence=ISS] [GO:0006915 "apoptotic
process" evidence=ISS] [GO:0006364 "rRNA processing" evidence=ISS]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0006915 GO:GO:0005730
GO:GO:0008380 GO:GO:0006397 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268802 GeneTree:ENSGT00670000098028 EMBL:BC113207
IPI:IPI00688068 RefSeq:NP_001039850.1 UniGene:Bt.23258
ProteinModelPortal:Q29S22 SMR:Q29S22 PRIDE:Q29S22
Ensembl:ENSBTAT00000003058 GeneID:534721 KEGG:bta:534721 CTD:51202
HOVERGEN:HBG100512 InParanoid:Q29S22 KO:K14777 OMA:IFIPSKF
OrthoDB:EOG4TXBRS NextBio:20876515 Uniprot:Q29S22
Length = 457
Score = 339 (124.4 bits), Expect = 1.5e-49, Sum P(2) = 1.5e-49
Identities = 88/260 (33%), Positives = 139/260 (53%)
Query: 9 ETVKEIFASCSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTG 68
+T E+ + +F LG+ LC+ ++LG+ PTK+Q +AIP+ L GR ++ A TG+G
Sbjct: 17 QTAVEVEETKTFKDLGVTDVLCEAC-DQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSG 75
Query: 69 KTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYV 128
KT A+ PI+N L R+ FALVL PTREL Q+ E L + +
Sbjct: 76 KTGAFALPILNALLETPQRL------FALVLTPTRELAFQISEQFEALGSSIG-VQCAVI 128
Query: 129 MGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGK 188
+GG + + L K I++ATPGRL+DHL++T F L++++ DEADRIL + F
Sbjct: 129 VGGIDSMSQSLALAKKPHIVIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFET 188
Query: 189 EIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEK 248
E+++IL ++ R+ R+ L SAT+ +KV L + +L+ PV + K
Sbjct: 189 EVDKILKVI-PRD--------------RKTFLFSATMTKKVQKLQRAALKNPVKCAVSSK 233
Query: 249 KLPEDKSHVRFGSLESDVKE 268
+K + + S K+
Sbjct: 234 YQTVEKLQQYYLFIPSKFKD 253
Score = 198 (74.8 bits), Expect = 1.5e-49, Sum P(2) = 1.5e-49
Identities = 39/99 (39%), Positives = 60/99 (60%)
Query: 366 LHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRVG 425
LHG M Q R + FK + +++LL+TDVA+RGLD P V ++ +D + +Y+HRVG
Sbjct: 295 LHGQMSQSKRLGSLNKFKAKARSILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVG 354
Query: 426 RTARLGERGDSLLFLQPVEMDYLQDLEKH--GVSLTEYP 462
RTAR G G ++ F+ +++ Q +E H G L +P
Sbjct: 355 RTARAGRSGKAITFVTQYDVELFQRIE-HLIGKKLPVFP 392
>UNIPROTKB|Q9H0S4 [details] [associations]
symbol:DDX47 "Probable ATP-dependent RNA helicase DDX47"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0006915 "apoptotic process" evidence=IDA]
[GO:0008380 "RNA splicing" evidence=IMP] [GO:0006364 "rRNA
processing" evidence=IMP] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0006915 GO:GO:0005730
GO:GO:0008380 GO:GO:0006397 GO:GO:0003676 GO:GO:0003723
EMBL:CH471094 UniGene:Hs.719938 GermOnline:ENSG00000178878
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268802 CTD:51202 HOVERGEN:HBG100512 KO:K14777
OMA:IFIPSKF EMBL:AF078843 EMBL:AL136666 EMBL:AK054574 EMBL:AK127712
EMBL:AC007215 EMBL:BC009379 EMBL:BC068009 IPI:IPI00023972
IPI:IPI00397372 RefSeq:NP_057439.2 RefSeq:NP_957518.1 PDB:3BER
PDBsum:3BER ProteinModelPortal:Q9H0S4 SMR:Q9H0S4 IntAct:Q9H0S4
MINT:MINT-3056694 STRING:Q9H0S4 PhosphoSite:Q9H0S4 DMDM:52782792
SWISS-2DPAGE:Q9H0S4 PaxDb:Q9H0S4 PRIDE:Q9H0S4 DNASU:51202
Ensembl:ENST00000352940 Ensembl:ENST00000358007 GeneID:51202
KEGG:hsa:51202 UCSC:uc001rav.3 GeneCards:GC12P012966
HGNC:HGNC:18682 HPA:HPA014855 neXtProt:NX_Q9H0S4
PharmGKB:PA134918403 InParanoid:Q9H0S4 PhylomeDB:Q9H0S4
ChiTaRS:DDX47 EvolutionaryTrace:Q9H0S4 GenomeRNAi:51202
NextBio:54238 ArrayExpress:Q9H0S4 Bgee:Q9H0S4 CleanEx:HS_DDX47
Genevestigator:Q9H0S4 Uniprot:Q9H0S4
Length = 455
Score = 335 (123.0 bits), Expect = 4.6e-49, Sum P(2) = 4.6e-49
Identities = 86/250 (34%), Positives = 134/250 (53%)
Query: 19 SFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPII 78
+F LG+ LC+ ++LG+ PTK+Q +AIP+ L GR ++ A TG+GKT A+ PI+
Sbjct: 25 TFKDLGVTDVLCEAC-DQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPIL 83
Query: 79 NHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEK 138
N L R+ FALVL PTREL Q+ E L + ++GG + +
Sbjct: 84 NALLETPQRL------FALVLTPTRELAFQISEQFEALGSSIG-VQSAVIVGGIDSMSQS 136
Query: 139 ARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILG 198
L K I++ATPGRL+DHL++T F L++++ DEADRIL + F E+++IL ++
Sbjct: 137 LALAKKPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVI- 195
Query: 199 SRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLPEDKSHVR 258
R+ R+ L SAT+ +KV L + +L+ PV + K +K
Sbjct: 196 PRD--------------RKTFLFSATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQY 241
Query: 259 FGSLESDVKE 268
+ + S K+
Sbjct: 242 YIFIPSKFKD 251
Score = 198 (74.8 bits), Expect = 4.6e-49, Sum P(2) = 4.6e-49
Identities = 39/99 (39%), Positives = 60/99 (60%)
Query: 366 LHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRVG 425
LHG M Q R + FK + +++LL+TDVA+RGLD P V ++ +D + +Y+HRVG
Sbjct: 293 LHGQMSQSKRLGSLNKFKAKARSILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVG 352
Query: 426 RTARLGERGDSLLFLQPVEMDYLQDLEKH--GVSLTEYP 462
RTAR G G ++ F+ +++ Q +E H G L +P
Sbjct: 353 RTARAGRSGKAITFVTQYDVELFQRIE-HLIGKKLPGFP 390
>MGI|MGI:1915005 [details] [associations]
symbol:Ddx47 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 47"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005730 "nucleolus"
evidence=ISO] [GO:0006364 "rRNA processing" evidence=ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0006915 "apoptotic
process" evidence=ISO] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0008380 "RNA splicing" evidence=ISO]
[GO:0016787 "hydrolase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:1915005
GO:GO:0005524 GO:GO:0006915 GO:GO:0005730 GO:GO:0008380
GO:GO:0006397 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268802
GeneTree:ENSGT00670000098028 CTD:51202 HOVERGEN:HBG100512 KO:K14777
OMA:IFIPSKF OrthoDB:EOG4TXBRS ChiTaRS:DDX47 EMBL:AK010310
EMBL:AK076982 IPI:IPI00187240 RefSeq:NP_080636.2 UniGene:Mm.166524
ProteinModelPortal:Q9CWX9 SMR:Q9CWX9 IntAct:Q9CWX9
PhosphoSite:Q9CWX9 PaxDb:Q9CWX9 PRIDE:Q9CWX9
Ensembl:ENSMUST00000032326 GeneID:67755 KEGG:mmu:67755
InParanoid:Q9CWX9 NextBio:325481 Bgee:Q9CWX9 CleanEx:MM_DDX47
Genevestigator:Q9CWX9 GermOnline:ENSMUSG00000030204 Uniprot:Q9CWX9
Length = 455
Score = 334 (122.6 bits), Expect = 2.5e-48, Sum P(2) = 2.5e-48
Identities = 88/260 (33%), Positives = 138/260 (53%)
Query: 9 ETVKEIFASCSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTG 68
+T E + +F LG+ LC+ ++LG+ PTK+Q +AIP+ L GR ++ A TG+G
Sbjct: 15 QTAAEEEETKTFKDLGVTDVLCEAC-DQLGWAKPTKIQIEAIPLALQGRDIIGLAETGSG 73
Query: 69 KTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYV 128
KT A+ PI+N L R+ FALVL PTREL Q+ E L + +
Sbjct: 74 KTGAFALPILNALLETPQRL------FALVLTPTRELAFQISEQFEALGSSIG-VQCAVI 126
Query: 129 MGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGK 188
+GG + + L K I++ATPGRL+DHL++T F L++++ DEADRIL + F
Sbjct: 127 VGGIDSMSQSLALAKKPHIVIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFET 186
Query: 189 EIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEK 248
E+++IL ++ R+ R+ L SAT+ +KV L + +L+ PV + K
Sbjct: 187 EVDKILKVI-PRD--------------RKTFLFSATMTKKVQKLQRAALKNPVKCAVSSK 231
Query: 249 KLPEDKSHVRFGSLESDVKE 268
+K + + S K+
Sbjct: 232 YQTVEKLQQYYLFIPSKFKD 251
Score = 198 (74.8 bits), Expect = 2.5e-48, Sum P(2) = 2.5e-48
Identities = 39/99 (39%), Positives = 60/99 (60%)
Query: 366 LHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRVG 425
LHG M Q R + FK + +++LL+TDVA+RGLD P V ++ +D + +Y+HRVG
Sbjct: 293 LHGQMSQSKRLGSLNKFKAKARSILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVG 352
Query: 426 RTARLGERGDSLLFLQPVEMDYLQDLEKH--GVSLTEYP 462
RTAR G G ++ F+ +++ Q +E H G L +P
Sbjct: 353 RTARAGRSGKAITFVTQYDVELFQRIE-HLIGKKLPVFP 390
>UNIPROTKB|G3V727 [details] [associations]
symbol:Ddx47 "Protein Ddx47" species:10116 "Rattus
norvegicus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA]
[GO:0006915 "apoptotic process" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 EMBL:CH473964
GeneTree:ENSGT00670000098028 CTD:51202 KO:K14777 OMA:IFIPSKF
RefSeq:NP_001015005.2 UniGene:Rn.73790 Ensembl:ENSRNOT00000011096
GeneID:297685 KEGG:rno:297685 RGD:1310437 NextBio:642541
Uniprot:G3V727
Length = 455
Score = 334 (122.6 bits), Expect = 2.5e-48, Sum P(2) = 2.5e-48
Identities = 88/260 (33%), Positives = 138/260 (53%)
Query: 9 ETVKEIFASCSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTG 68
+T E + +F LG+ LC+ ++LG+ PTK+Q +AIP+ L GR ++ A TG+G
Sbjct: 15 QTAAEEEETKTFKDLGVTDVLCEAC-DQLGWAKPTKIQIEAIPLALQGRDIIGLAETGSG 73
Query: 69 KTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYV 128
KT A+ PI+N L R+ FALVL PTREL Q+ E L + +
Sbjct: 74 KTGAFALPILNALLETPQRL------FALVLTPTRELAFQISEQFEALGSSIG-VQCAVI 126
Query: 129 MGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGK 188
+GG + + L K I++ATPGRL+DHL++T F L++++ DEADRIL + F
Sbjct: 127 VGGIDSMSQSLALAKKPHIVIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFET 186
Query: 189 EIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEK 248
E+++IL ++ R+ R+ L SAT+ +KV L + +L+ PV + K
Sbjct: 187 EVDKILKVI-PRD--------------RKTFLFSATMTKKVQKLQRAALKNPVKCAVSSK 231
Query: 249 KLPEDKSHVRFGSLESDVKE 268
+K + + S K+
Sbjct: 232 YQTVEKLQQYYLFIPSKFKD 251
Score = 198 (74.8 bits), Expect = 2.5e-48, Sum P(2) = 2.5e-48
Identities = 39/99 (39%), Positives = 60/99 (60%)
Query: 366 LHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRVG 425
LHG M Q R + FK + +++LL+TDVA+RGLD P V ++ +D + +Y+HRVG
Sbjct: 293 LHGQMSQSKRLGSLNKFKAKARSILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVG 352
Query: 426 RTARLGERGDSLLFLQPVEMDYLQDLEKH--GVSLTEYP 462
RTAR G G ++ F+ +++ Q +E H G L +P
Sbjct: 353 RTARAGRSGKAITFVTQYDVELFQRIE-HLIGKKLPVFP 390
>ASPGD|ASPL0000013201 [details] [associations]
symbol:AN4233 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0003723 EMBL:BN001302
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 EMBL:AACD01000068 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268802 KO:K14777 OMA:IFIPSKF
RefSeq:XP_661837.1 ProteinModelPortal:Q5B5E7 SMR:Q5B5E7
STRING:Q5B5E7 EnsemblFungi:CADANIAT00004427 GeneID:2873652
KEGG:ani:AN4233.2 OrthoDB:EOG4ZPJ3P Uniprot:Q5B5E7
Length = 465
Score = 341 (125.1 bits), Expect = 5.8e-48, Sum P(2) = 5.8e-48
Identities = 86/230 (37%), Positives = 127/230 (55%)
Query: 19 SFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPII 78
SF LG+ LC+ E +G++APT +Q+QAIP+ L GR V+ A TG+GKT A+ P++
Sbjct: 47 SFKELGIIDQLCEAC-ENMGYKAPTPIQSQAIPLALEGRDVIGLAETGSGKTAAFALPML 105
Query: 79 NHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEK 138
L +P+ F LVL PTREL Q+ + L + ++GG + +
Sbjct: 106 QALME-APQT-----LFGLVLAPTRELAYQISQAFETLGSTIG-VRCAVIVGGMDMVAQS 158
Query: 139 ARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILG 198
L K I+VATPGRLLDHL++T F NL+++ DEADR+L++ FG+ +++I+ IL
Sbjct: 159 IALGKKPHIIVATPGRLLDHLENTKGFSLRNLKYLAIDEADRLLDMDFGESLDKIIRIL- 217
Query: 199 SRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEK 248
R R L SAT++ KV L + SL PV + + K
Sbjct: 218 PRT--------------RHTYLFSATMSTKVESLQRASLSNPVRVSVSSK 253
Score = 186 (70.5 bits), Expect = 5.8e-48, Sum P(2) = 5.8e-48
Identities = 39/102 (38%), Positives = 61/102 (59%)
Query: 366 LHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRVG 425
LHG + Q R G F++ + +L++TDVAARGLD P V + +D ++ Y+HRVG
Sbjct: 315 LHGQLSQSARLGALGKFRSRSRDILVATDVAARGLDIPSVDVVFNFDLPMDSKTYIHRVG 374
Query: 426 RTARLGERGDSLLFLQPVEMDYLQDLEKHGVS--LTEYPLLK 465
RTAR G+ G ++ F+ +++ +E H +S L EY + K
Sbjct: 375 RTARAGKSGVAISFVTQYDVEVWLRIE-HALSKKLPEYQVEK 415
>ASPGD|ASPL0000061778 [details] [associations]
symbol:AN0589 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
EMBL:BN001308 EMBL:AACD01000007 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K14776
InterPro:IPR025313 Pfam:PF13959 RefSeq:XP_658193.1
ProteinModelPortal:Q5BFU1 SMR:Q5BFU1 STRING:Q5BFU1
EnsemblFungi:CADANIAT00002085 GeneID:2876356 KEGG:ani:AN0589.2
HOGENOM:HOG000268801 OMA:MFERKNQ OrthoDB:EOG4R53B0 Uniprot:Q5BFU1
Length = 812
Score = 357 (130.7 bits), Expect = 1.6e-47, Sum P(2) = 1.6e-47
Identities = 89/229 (38%), Positives = 135/229 (58%)
Query: 19 SFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPII 78
SFS L + L F+ T +Q++AI L GR VL A TG+GKT+A+L PI+
Sbjct: 49 SFSDLPISEPTLSGLTSS-HFKTLTDIQSRAISHALKGRDVLGAAKTGSGKTLAFLVPIL 107
Query: 79 NHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEK 138
+L Y + G AL++ PTREL +Q++E+L K+ R+H G V+GG++ +E+
Sbjct: 108 ENL--YRKQWSDHDGLGALIISPTRELAIQIFEVLRKI-GRYHTFSAGLVIGGKSLKEEQ 164
Query: 139 ARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILG 198
RL + ++ILV TPGR+L HL T+ F NL+ ++ DEADRI+++GF K ++ I
Sbjct: 165 ERLGR-MNILVCTPGRMLQHLDQTAFFETYNLQMLVLDEADRIMDMGFQKTVDAI----- 218
Query: 199 SRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDE 247
IG + +RQ LL SAT +KV+ LA++SL+ P + + E
Sbjct: 219 ---IGHLPP-------ERQTLLFSATQTKKVSDLARLSLQDPEYVAVHE 257
Score = 203 (76.5 bits), Expect = 1.6e-47, Sum P(2) = 1.6e-47
Identities = 59/153 (38%), Positives = 76/153 (49%)
Query: 307 LSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRL 366
L L + + K +VF S+ V F Y F+ H QP + L L
Sbjct: 280 LDTLWSFIRSNLKSKTIVFMSSGKQVRFVYE---SFR---HMQPGIPL---------LHL 324
Query: 367 HGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRVGR 426
HG KQ R F + A+L STDVAARGLDFP V +IQ D +A Y+HRVGR
Sbjct: 325 HGRQKQGGRLDITTRFSQAQHAVLFSTDVAARGLDFPAVDWVIQLDCPEDADTYIHRVGR 384
Query: 427 TARLGERGDSLLFLQPVE-MDYLQDLEKHGVSL 458
TAR G ++LFL P E L+ LE+ V++
Sbjct: 385 TARYERDGRAVLFLDPSEEKGMLRRLEQKRVTV 417
>DICTYBASE|DDB_G0284017 [details] [associations]
symbol:ddx10 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0042254 "ribosome biogenesis"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0006364 "rRNA processing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0284017 GO:GO:0005524
GO:GO:0005730 GenomeReviews:CM000153_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
EMBL:AAFI02000059 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K14776 InterPro:IPR025313 Pfam:PF13959
HSSP:P26196 RefSeq:XP_638786.1 ProteinModelPortal:Q54Q94
STRING:Q54Q94 PRIDE:Q54Q94 EnsemblProtists:DDB0234197
GeneID:8624375 KEGG:ddi:DDB_G0284017 OMA:AMNILIA Uniprot:Q54Q94
Length = 878
Score = 344 (126.2 bits), Expect = 6.4e-47, Sum P(2) = 6.4e-47
Identities = 90/250 (36%), Positives = 140/250 (56%)
Query: 3 KMSKKKETVKEI-FASCS-FSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVL 60
K K+KE +I + S + F L + L E F T +Q ++P L GR +L
Sbjct: 124 KNDKEKEKEYKIDYPSATDFKDLPISQLTLKALTESK-FLKLTDIQRASLPHTLCGRDIL 182
Query: 61 VNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRF 120
A TG+GKT++++ PI+ L + R R G A+VL PTREL +Q++++L K + ++
Sbjct: 183 GAAKTGSGKTLSFILPILETL--WRNRWGRDDGIGAIVLSPTRELAIQIFDVL-KAVGKY 239
Query: 121 HWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADR 180
H G ++GG N +EK ++ ++IL+ATPGRLL H+ T F +NL+ ++ DEADR
Sbjct: 240 HTFSAGLIIGGRNVQQEKDKIN-AMNILIATPGRLLQHMDETYGFDCSNLKILVLDEADR 298
Query: 181 ILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETP 240
IL+LGF K + I++ L +RQ LL SAT + + LA++SL+ P
Sbjct: 299 ILDLGFSKCLNSIVENLPR---------------ERQTLLFSATQTKSIRDLARLSLQEP 343
Query: 241 VLIGLDEKKL 250
I + EK +
Sbjct: 344 EYISVYEKDI 353
Score = 216 (81.1 bits), Expect = 6.4e-47, Sum P(2) = 6.4e-47
Identities = 59/163 (36%), Positives = 80/163 (49%)
Query: 292 QRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPD 351
Q + C L + L++L T ++ K++VFF++C V F + P
Sbjct: 358 QNLTQTLCVIPLEMKLNMLFSFIKTHLTSKIIVFFASCKQVRFAHETFKLLN------PG 411
Query: 352 MELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQY 411
L F LHG MKQ R F F +K L +TD+AARGLDFP V+ +IQ
Sbjct: 412 TTL---------FPLHGKMKQWTRLEVFEDFCKKKAGTLFATDIAARGLDFPAVEWVIQV 462
Query: 412 DSAGEATEYVHRVGRTARLGERGDSLLFLQPVEMDYLQDL-EK 453
D + Y+HRVGRTAR G S+ L P E D + +L EK
Sbjct: 463 DCPDDIETYIHRVGRTARNDAPGQSITILLPSEKDGMVNLMEK 505
>ZFIN|ZDB-GENE-050522-359 [details] [associations]
symbol:zgc:112350 "zgc:112350" species:7955 "Danio
rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-050522-359 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOVERGEN:HBG100512 KO:K14777
EMBL:BC095776 IPI:IPI00488135 RefSeq:NP_001018522.1
UniGene:Dr.84733 ProteinModelPortal:Q502B4 SMR:Q502B4 GeneID:553715
KEGG:dre:553715 NextBio:20880445 Uniprot:Q502B4
Length = 512
Score = 331 (121.6 bits), Expect = 1.9e-46, Sum P(2) = 1.9e-46
Identities = 85/247 (34%), Positives = 133/247 (53%)
Query: 8 KETVKEIFASCSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGT 67
+ETV SF LG+ LC+ ++LG++ PTK+Q +AIPV L GR V+ A TG+
Sbjct: 69 EETVTTGEIHTSFKELGVTEVLCEAC-DQLGWKKPTKIQIEAIPVALQGRDVIGLAETGS 127
Query: 68 GKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGY 127
GKT A+ P++ L + + R+ LVL PTREL Q+ E L +
Sbjct: 128 GKTGAFAVPVLQSLLACAQRLH------TLVLTPTRELAFQIAEQFDALGSSIG-VKTAV 180
Query: 128 VMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFG 187
++GG + + L K +++ATPGRL+DH+++T F L++++ DEADRIL + F
Sbjct: 181 IVGGIDMMSQALVLAKKPHVVIATPGRLIDHMENTKGFNLRALKYLVMDEADRILNMDFE 240
Query: 188 KEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDE 247
E+++IL ++ R+ R+ L SAT+ +KV L + +L+ PV +
Sbjct: 241 SEVDKILKVI-PRD--------------RRTFLFSATMTKKVQKLQRAALQDPVKCSVSS 285
Query: 248 KKLPEDK 254
K DK
Sbjct: 286 KYATVDK 292
Score = 212 (79.7 bits), Expect = 1.9e-46, Sum P(2) = 1.9e-46
Identities = 41/98 (41%), Positives = 60/98 (61%)
Query: 366 LHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRVG 425
LHG M Q R FK++ +++LL+TDVA+RGLD P V C+I +D + +Y+HRVG
Sbjct: 348 LHGQMSQNKRLGALNKFKSKSRSVLLATDVASRGLDIPHVDCVINFDIPTHSKDYIHRVG 407
Query: 426 RTARLGERGDSLLFLQPVEMDYLQDLEKH-GVSLTEYP 462
RTAR G G S+ F+ +++ Q +E G L +P
Sbjct: 408 RTARAGRSGKSITFVTQYDVELFQRIEALIGKKLPAFP 445
Score = 52 (23.4 bits), Expect = 4.5e-15, Sum P(2) = 4.5e-15
Identities = 26/126 (20%), Positives = 53/126 (42%)
Query: 209 NEVSNVKRQNL-LLSATLNEKVNHLAKISLETPVLIGLDEKKLPEDKSHVRFGSLESDVK 267
+ + N K NL L + ++ + + + E+ V L K +P D+ F + +
Sbjct: 210 DHMENTKGFNLRALKYLVMDEADRILNMDFESEVDKIL--KVIPRDRRTFLFSATMTKKV 267
Query: 268 EEVEHPST---TMRSTTEDFKLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVV 324
++++ + S + + +L Q Y+ +P + L+SIL L +V
Sbjct: 268 QKLQRAALQDPVKCSVSSKYATVDKLQQFYIFIPSKYKDCYLVSILNEL----AGNSFMV 323
Query: 325 FFSTCD 330
F TC+
Sbjct: 324 FCGTCN 329
>UNIPROTKB|Q83DM8 [details] [associations]
symbol:rhlE "ATP-dependent RNA helicase" species:227377
"Coxiella burnetii RSA 493" [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:AE016828 GenomeReviews:AE016828_GR InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927 OMA:HLIKQHN
RefSeq:NP_819700.2 ProteinModelPortal:Q83DM8 GeneID:1208557
KEGG:cbu:CBU_0670 PATRIC:17930019 ProtClustDB:CLSK914228
BioCyc:CBUR227377:GJ7S-666-MONOMER Uniprot:Q83DM8
Length = 420
Score = 336 (123.3 bits), Expect = 5.0e-46, Sum P(2) = 5.0e-46
Identities = 89/227 (39%), Positives = 126/227 (55%)
Query: 19 SFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPII 78
SF LGL + L +RE+ G+ PT VQ QAIPVIL R V+V A TGTGKT + P++
Sbjct: 11 SFEVLGLSAELLRAIREQ-GYVEPTPVQRQAIPVILQARDVMVTAQTGTGKTAGFTLPLL 69
Query: 79 NHLQSYSPRIDRSSGTF--ALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSK 136
L P + RS+ AL+L PTREL +QV+E + + ++ + V GG +
Sbjct: 70 QRLFVSRPPLQRSAKPVIRALILTPTRELAVQVFECV-RAYGKYLPLKATVVHGGVSIKP 128
Query: 137 EKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDI 196
+ LR+G+ ILVATPGRLLD L + + + + + DEADR+L++GF +I IL +
Sbjct: 129 QINHLRRGVDILVATPGRLLD-LVNQGVLNLSRVEFFVLDEADRMLDMGFLPDIRRILKL 187
Query: 197 LGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLI 243
L RQNLL SAT ++++ L L +P LI
Sbjct: 188 LPE---------------SRQNLLFSATFSKEIKELTDKLLHSPALI 219
Score = 168 (64.2 bits), Expect = 5.0e-46, Sum P(2) = 5.0e-46
Identities = 36/88 (40%), Positives = 51/88 (57%)
Query: 366 LHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRVG 425
+HGN Q R FK K +L++TDVAARGLD K+ +I ++ A +YVHRVG
Sbjct: 286 IHGNKSQAARMRALTQFKQGKIRVLVATDVAARGLDIDKLPHVINFELPDAAKDYVHRVG 345
Query: 426 RTARLGERGDSLLFLQPVEMDYLQDLEK 453
RT R G ++ + E+ L+D+EK
Sbjct: 346 RTGRASNDGVAISLVSGDEVRLLRDIEK 373
>TIGR_CMR|CBU_0670 [details] [associations]
symbol:CBU_0670 "ATP-dependent RNA helicase RhlE,
putative" species:227377 "Coxiella burnetii RSA 493" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE016828 GenomeReviews:AE016828_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927
OMA:HLIKQHN RefSeq:NP_819700.2 ProteinModelPortal:Q83DM8
GeneID:1208557 KEGG:cbu:CBU_0670 PATRIC:17930019
ProtClustDB:CLSK914228 BioCyc:CBUR227377:GJ7S-666-MONOMER
Uniprot:Q83DM8
Length = 420
Score = 336 (123.3 bits), Expect = 5.0e-46, Sum P(2) = 5.0e-46
Identities = 89/227 (39%), Positives = 126/227 (55%)
Query: 19 SFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPII 78
SF LGL + L +RE+ G+ PT VQ QAIPVIL R V+V A TGTGKT + P++
Sbjct: 11 SFEVLGLSAELLRAIREQ-GYVEPTPVQRQAIPVILQARDVMVTAQTGTGKTAGFTLPLL 69
Query: 79 NHLQSYSPRIDRSSGTF--ALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSK 136
L P + RS+ AL+L PTREL +QV+E + + ++ + V GG +
Sbjct: 70 QRLFVSRPPLQRSAKPVIRALILTPTRELAVQVFECV-RAYGKYLPLKATVVHGGVSIKP 128
Query: 137 EKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDI 196
+ LR+G+ ILVATPGRLLD L + + + + + DEADR+L++GF +I IL +
Sbjct: 129 QINHLRRGVDILVATPGRLLD-LVNQGVLNLSRVEFFVLDEADRMLDMGFLPDIRRILKL 187
Query: 197 LGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLI 243
L RQNLL SAT ++++ L L +P LI
Sbjct: 188 LPE---------------SRQNLLFSATFSKEIKELTDKLLHSPALI 219
Score = 168 (64.2 bits), Expect = 5.0e-46, Sum P(2) = 5.0e-46
Identities = 36/88 (40%), Positives = 51/88 (57%)
Query: 366 LHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRVG 425
+HGN Q R FK K +L++TDVAARGLD K+ +I ++ A +YVHRVG
Sbjct: 286 IHGNKSQAARMRALTQFKQGKIRVLVATDVAARGLDIDKLPHVINFELPDAAKDYVHRVG 345
Query: 426 RTARLGERGDSLLFLQPVEMDYLQDLEK 453
RT R G ++ + E+ L+D+EK
Sbjct: 346 RTGRASNDGVAISLVSGDEVRLLRDIEK 373
>UNIPROTKB|E2RN03 [details] [associations]
symbol:DDX47 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0006915 "apoptotic process" evidence=IEA] [GO:0006364 "rRNA
processing" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0006915
GO:GO:0005730 GO:GO:0008380 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00670000098028
OMA:IFIPSKF EMBL:AAEX03015248 Ensembl:ENSCAFT00000020996
NextBio:20853120 Uniprot:E2RN03
Length = 482
Score = 334 (122.6 bits), Expect = 5.0e-46, Sum P(2) = 5.0e-46
Identities = 86/250 (34%), Positives = 134/250 (53%)
Query: 19 SFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPII 78
+F LG+ LC+ ++LG+ PTK+Q +AIP+ L GR ++ A TG+GKT A+ PI+
Sbjct: 51 TFKDLGVTDVLCEAC-DQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPIL 109
Query: 79 NHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEK 138
N L R+ FALVL PTREL Q+ E L + ++GG + +
Sbjct: 110 NALLETPQRL------FALVLTPTRELAFQISEQFEALGSSIG-VQSAVIVGGIDSMSQS 162
Query: 139 ARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILG 198
L K I++ATPGRL+DHL++T F L++++ DEADRIL + F E+++IL ++
Sbjct: 163 LALAKKPHIVIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVI- 221
Query: 199 SRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLPEDKSHVR 258
R+ R+ L SAT+ +KV L + +L+ PV + K +K
Sbjct: 222 PRD--------------RKTFLFSATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQY 267
Query: 259 FGSLESDVKE 268
+ + S K+
Sbjct: 268 YLFIPSKFKD 277
Score = 198 (74.8 bits), Expect = 5.0e-46, Sum P(2) = 5.0e-46
Identities = 39/99 (39%), Positives = 60/99 (60%)
Query: 366 LHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRVG 425
LHG M Q R + FK + +++LL+TDVA+RGLD P V ++ +D + +Y+HRVG
Sbjct: 319 LHGQMSQSKRLGSLNKFKAKARSILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVG 378
Query: 426 RTARLGERGDSLLFLQPVEMDYLQDLEKH--GVSLTEYP 462
RTAR G G ++ F+ +++ Q +E H G L +P
Sbjct: 379 RTARAGRSGKAITFVTQYDVELFQRIE-HLIGKKLPVFP 416
>GENEDB_PFALCIPARUM|MAL7P1.113 [details] [associations]
symbol:MAL7P1.113 "DEAD box helicase,
putative" species:5833 "Plasmodium falciparum" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0003723
"RNA binding" evidence=ISS] [GO:0016070 "RNA metabolic process"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
EMBL:AL844506 InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083
InterPro:IPR025313 Pfam:PF13959 KO:K01509 RefSeq:XP_001349115.1
ProteinModelPortal:Q8IBN8 EnsemblProtists:MAL7P1.113:mRNA
GeneID:2654935 KEGG:pfa:MAL7P1.113 EuPathDB:PlasmoDB:PF3D7_0721300
OMA:NDSHNEL ProtClustDB:CLSZ2514714 Uniprot:Q8IBN8
Length = 899
Score = 318 (117.0 bits), Expect = 7.9e-46, Sum P(4) = 7.9e-46
Identities = 76/196 (38%), Positives = 109/196 (55%)
Query: 6 KKKETVKEIFAS--CSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNA 63
KK K IF C + L +L + L E+ F T +Q +IP+ + + +
Sbjct: 160 KKMINYKNIFDGKFCDLKYI-LSESLINTL-EKNEFIKMTSIQKMSIPLFFKPNDIFLKS 217
Query: 64 ATGTGKTVAYLAPIINHLQSYSPR--IDRSSGTFALVLVPTRELCLQVYEILHKLLHRFH 121
TG+GKT+ Y P I + + + I R G F LVL PTREL +Q+ + L +
Sbjct: 218 MTGSGKTLCYAIPSIEKILNMKEKVKITRDMGIFVLVLSPTRELAIQINNLFCILTKPYP 277
Query: 122 WIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRI 181
+IV + GGE + EK RL+KGISIL TPGRLLDHL++T S T L+ +I DEAD+I
Sbjct: 278 YIVASCITGGEKKKSEKNRLKKGISILTCTPGRLLDHLENTKSLKLTFLKMVILDEADKI 337
Query: 182 LELGFGKEIEEILDIL 197
+ LG +I+ I D++
Sbjct: 338 IYLGTQDKIKLIYDMI 353
Score = 197 (74.4 bits), Expect = 7.9e-46, Sum P(4) = 7.9e-46
Identities = 39/102 (38%), Positives = 58/102 (56%)
Query: 357 LFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGE 416
LF + LHGN+ +EDR F F ++LL TD+ +RG+ F + +IQYD
Sbjct: 665 LFNNVNIYILHGNLSKEDRLGNFMDFSKTNNSILLCTDIISRGIHFDSLSVVIQYDPPQI 724
Query: 417 ATEYVHRVGRTARLGERGDSLLFLQPVEMDYLQDLEKHGVSL 458
EY+H+VGRTARL ++G + LFL + +L L+ + L
Sbjct: 725 LEEYIHKVGRTARLNKQGSAYLFLLKSQKQFLNILKNKNIQL 766
Score = 59 (25.8 bits), Expect = 7.9e-46, Sum P(4) = 7.9e-46
Identities = 18/61 (29%), Positives = 29/61 (47%)
Query: 284 FKLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQ 343
++LP QL Q + + + L+ +L L E +K VVF S +V++ LL
Sbjct: 517 YELPEQLKQYCILIDMKQKFICLIYML--LDCIEKKKKPVVFLSNHHSVEYLQILLKNIY 574
Query: 344 W 344
W
Sbjct: 575 W 575
Score = 57 (25.1 bits), Expect = 7.9e-46, Sum P(4) = 7.9e-46
Identities = 24/90 (26%), Positives = 43/90 (47%)
Query: 188 KEIEEILDILGSRNIGSIGE-GNEVSNV-------KRQNLLLSATLNEKVNHLAKISLET 239
KE E+LD + N+ + N+ SN K Q + +SATLN + LA L T
Sbjct: 370 KEENEVLDHINDTNMSDMNNISNDHSNDYEQFILDKFQMIFISATLNHAMKTLANYCL-T 428
Query: 240 PVLIGLDEKKLPEDKSHVRFGSLESDVKEE 269
+ ++++K K+ + G+ + K++
Sbjct: 429 NNTMWIEKEK----KNGINGGNKNDETKQK 454
Score = 42 (19.8 bits), Expect = 7.4e-42, Sum P(3) = 7.4e-42
Identities = 14/39 (35%), Positives = 22/39 (56%)
Query: 212 SNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKL 250
++V ++N+ ++ LNEK+ TPVL DEK L
Sbjct: 577 TDVNKKNIEVNKKLNEKI---------TPVLEREDEKLL 606
>UNIPROTKB|Q8IBN8 [details] [associations]
symbol:MAL7P1.113 "DEAD box helicase, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
EMBL:AL844506 InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083
InterPro:IPR025313 Pfam:PF13959 KO:K01509 RefSeq:XP_001349115.1
ProteinModelPortal:Q8IBN8 EnsemblProtists:MAL7P1.113:mRNA
GeneID:2654935 KEGG:pfa:MAL7P1.113 EuPathDB:PlasmoDB:PF3D7_0721300
OMA:NDSHNEL ProtClustDB:CLSZ2514714 Uniprot:Q8IBN8
Length = 899
Score = 318 (117.0 bits), Expect = 7.9e-46, Sum P(4) = 7.9e-46
Identities = 76/196 (38%), Positives = 109/196 (55%)
Query: 6 KKKETVKEIFAS--CSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNA 63
KK K IF C + L +L + L E+ F T +Q +IP+ + + +
Sbjct: 160 KKMINYKNIFDGKFCDLKYI-LSESLINTL-EKNEFIKMTSIQKMSIPLFFKPNDIFLKS 217
Query: 64 ATGTGKTVAYLAPIINHLQSYSPR--IDRSSGTFALVLVPTRELCLQVYEILHKLLHRFH 121
TG+GKT+ Y P I + + + I R G F LVL PTREL +Q+ + L +
Sbjct: 218 MTGSGKTLCYAIPSIEKILNMKEKVKITRDMGIFVLVLSPTRELAIQINNLFCILTKPYP 277
Query: 122 WIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRI 181
+IV + GGE + EK RL+KGISIL TPGRLLDHL++T S T L+ +I DEAD+I
Sbjct: 278 YIVASCITGGEKKKSEKNRLKKGISILTCTPGRLLDHLENTKSLKLTFLKMVILDEADKI 337
Query: 182 LELGFGKEIEEILDIL 197
+ LG +I+ I D++
Sbjct: 338 IYLGTQDKIKLIYDMI 353
Score = 197 (74.4 bits), Expect = 7.9e-46, Sum P(4) = 7.9e-46
Identities = 39/102 (38%), Positives = 58/102 (56%)
Query: 357 LFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGE 416
LF + LHGN+ +EDR F F ++LL TD+ +RG+ F + +IQYD
Sbjct: 665 LFNNVNIYILHGNLSKEDRLGNFMDFSKTNNSILLCTDIISRGIHFDSLSVVIQYDPPQI 724
Query: 417 ATEYVHRVGRTARLGERGDSLLFLQPVEMDYLQDLEKHGVSL 458
EY+H+VGRTARL ++G + LFL + +L L+ + L
Sbjct: 725 LEEYIHKVGRTARLNKQGSAYLFLLKSQKQFLNILKNKNIQL 766
Score = 59 (25.8 bits), Expect = 7.9e-46, Sum P(4) = 7.9e-46
Identities = 18/61 (29%), Positives = 29/61 (47%)
Query: 284 FKLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQ 343
++LP QL Q + + + L+ +L L E +K VVF S +V++ LL
Sbjct: 517 YELPEQLKQYCILIDMKQKFICLIYML--LDCIEKKKKPVVFLSNHHSVEYLQILLKNIY 574
Query: 344 W 344
W
Sbjct: 575 W 575
Score = 57 (25.1 bits), Expect = 7.9e-46, Sum P(4) = 7.9e-46
Identities = 24/90 (26%), Positives = 43/90 (47%)
Query: 188 KEIEEILDILGSRNIGSIGE-GNEVSNV-------KRQNLLLSATLNEKVNHLAKISLET 239
KE E+LD + N+ + N+ SN K Q + +SATLN + LA L T
Sbjct: 370 KEENEVLDHINDTNMSDMNNISNDHSNDYEQFILDKFQMIFISATLNHAMKTLANYCL-T 428
Query: 240 PVLIGLDEKKLPEDKSHVRFGSLESDVKEE 269
+ ++++K K+ + G+ + K++
Sbjct: 429 NNTMWIEKEK----KNGINGGNKNDETKQK 454
Score = 42 (19.8 bits), Expect = 7.4e-42, Sum P(3) = 7.4e-42
Identities = 14/39 (35%), Positives = 22/39 (56%)
Query: 212 SNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKL 250
++V ++N+ ++ LNEK+ TPVL DEK L
Sbjct: 577 TDVNKKNIEVNKKLNEKI---------TPVLEREDEKLL 606
>POMBASE|SPAC1093.05 [details] [associations]
symbol:SPAC1093.05 "ATP-dependent RNA helicase Hca4
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISO] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005829
"cytosol" evidence=IDA] [GO:0006364 "rRNA processing" evidence=ISO]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 PomBase:SPAC1093.05 GO:GO:0005829 GO:GO:0005524
EMBL:CU329670 GO:GO:0005730 GenomeReviews:CU329670_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K14776 InterPro:IPR025313 Pfam:PF13959 HOGENOM:HOG000268801
OMA:MFERKNQ OrthoDB:EOG4R53B0 PIR:T50068 RefSeq:NP_594652.1
ProteinModelPortal:Q9UTP9 SMR:Q9UTP9 STRING:Q9UTP9
EnsemblFungi:SPAC1093.05.1 GeneID:2541630 KEGG:spo:SPAC1093.05
NextBio:20802723 Uniprot:Q9UTP9
Length = 735
Score = 336 (123.3 bits), Expect = 1.4e-45, Sum P(2) = 1.4e-45
Identities = 85/229 (37%), Positives = 127/229 (55%)
Query: 43 TKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPT 102
T++Q Q IP L GR +L A TG+GKT+A++ P+I +L Y + G ALV+ PT
Sbjct: 63 TEIQKQCIPSALKGRDILGAAKTGSGKTLAFIVPLIENL--YRKKWTSLDGLGALVISPT 120
Query: 103 RELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHT 162
REL +Q +E L K+ R H G ++GG N +EK RL + ++ILV TPGRLL H+
Sbjct: 121 RELAIQTFETLVKI-GRLHSFSAGLIIGGNNYKEEKERLSR-MNILVCTPGRLLQHIDQA 178
Query: 163 SSFLHTNLRWIIFDEADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLS 222
+F + L+ +I DEADRIL++GF ++ I+ L V RQ +L S
Sbjct: 179 VNFDTSGLQMLILDEADRILDMGFRTTLDAIVSSLP---------------VHRQTMLFS 223
Query: 223 ATLNEKVNHLAKISLETPVLIGLDEKKLPEDKSHVRFGSLESDVKEEVE 271
AT + V LA++SL+ P I + E S++ L + E+++
Sbjct: 224 ATQTKSVKDLARLSLQNPDFISVHENDTSSTPSNLNQFYLTVPLTEKLD 272
Score = 210 (79.0 bits), Expect = 1.4e-45, Sum P(2) = 1.4e-45
Identities = 53/152 (34%), Positives = 73/152 (48%)
Query: 307 LSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRL 366
L IL T + K +VF S+C V F Y + P + L L
Sbjct: 271 LDILFGFIRTHLKFKTIVFLSSCKQVRFVYETFRRMR------PGISL---------LHL 315
Query: 367 HGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRVGR 426
HG KQ R F + + +L TD+ ARGLDFP V +IQ D+ + Y+HRVGR
Sbjct: 316 HGKQKQTTRTEVTAKFTSSRHVVLFCTDIVARGLDFPAVDWVIQLDAPEDVDTYIHRVGR 375
Query: 427 TARLGERGDSLLFLQPVEMDYLQDLEKHGVSL 458
TAR G++LL L P E +L+ LE +++
Sbjct: 376 TARYNRSGNALLLLLPSEEAFLKRLESKKIAV 407
Score = 41 (19.5 bits), Expect = 4.0e-13, Sum P(2) = 4.0e-13
Identities = 10/31 (32%), Positives = 17/31 (54%)
Query: 210 EVSNVKRQNLLLSATLNEKVNHLAKISLETP 240
E ++ N + A L+E V+H A++ L P
Sbjct: 20 EEEEIEELNSQIEA-LSETVDHFAELPLTQP 49
>SGD|S000003931 [details] [associations]
symbol:DRS1 "Nucleolar DEAD-box protein required for ribosome
assembly and function" species:4932 "Saccharomyces cerevisiae"
[GO:0000027 "ribosomal large subunit assembly" evidence=TAS]
[GO:0005730 "nucleolus" evidence=IEA;IDA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0042254
"ribosome biogenesis" evidence=IEA] [GO:0030687 "preribosome, large
subunit precursor" evidence=IDA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0006364 "rRNA processing" evidence=TAS]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=TAS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 SGD:S000003931 GO:GO:0005524 GO:GO:0005730
EMBL:BK006945 GO:GO:0003723 GO:GO:0030687 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 EMBL:X91488
GO:GO:0004004 GO:GO:0000027 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00550000074997 HOGENOM:HOG000265456
KO:K13181 OrthoDB:EOG4B01XM EMBL:L00683 EMBL:Z73113 PIR:S64750
RefSeq:NP_013093.1 ProteinModelPortal:P32892 SMR:P32892
DIP:DIP-6471N IntAct:P32892 MINT:MINT-648259 STRING:P32892
PaxDb:P32892 PeptideAtlas:P32892 EnsemblFungi:YLL008W GeneID:850652
KEGG:sce:YLL008W CYGD:YLL008w OMA:RIRKRDH NextBio:966605
Genevestigator:P32892 GermOnline:YLL008W Uniprot:P32892
Length = 752
Score = 360 (131.8 bits), Expect = 2.0e-45, Sum P(2) = 2.0e-45
Identities = 89/242 (36%), Positives = 140/242 (57%)
Query: 9 ETVKEIFASCSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTG 68
E K+++ + F+SL L + L LG+ P+ +Q+ IP+ L G+ ++ A TG+G
Sbjct: 224 EAKKQMYEN--FNSLSLSRPVLKGLAS-LGYVKPSPIQSATIPIALLGKDIIAGAVTGSG 280
Query: 69 KTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRF-HWIVPGY 127
KT A++ PII L Y P + + T +VL+PTREL +QV ++ K + RF I G
Sbjct: 281 KTAAFMIPIIERLL-YKPA--KIASTRVIVLLPTRELAIQVADV-GKQIARFVSGITFGL 336
Query: 128 VMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFG 187
+GG N +++ L+ I++ATPGR +DH+++++SF ++ ++ DEADR+LE GF
Sbjct: 337 AVGGLNLRQQEQMLKSRPDIVIATPGRFIDHIRNSASFNVDSVEILVMDEADRMLEEGFQ 396
Query: 188 KEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDE 247
E+ EI+ +L S RQNLL SAT+N K+ L +SL+ PV I +D
Sbjct: 397 DELNEIMGLLPSN---------------RQNLLFSATMNSKIKSLVSLSLKKPVRIMIDP 441
Query: 248 KK 249
K
Sbjct: 442 PK 443
Score = 177 (67.4 bits), Expect = 2.0e-45, Sum P(2) = 2.0e-45
Identities = 35/81 (43%), Positives = 49/81 (60%)
Query: 366 LHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRVG 425
LHG++ QE R + FK + +L+ TD+A+RGLD PK++ +I YD Y+HRVG
Sbjct: 509 LHGSLTQEQRLDSVNKFKNLEVPVLICTDLASRGLDIPKIEVVINYDMPKSYEIYLHRVG 568
Query: 426 RTARLGERGDSLLFLQPVEMD 446
RTAR G G S+ F+ D
Sbjct: 569 RTARAGREGRSVTFVGESSQD 589
>UNIPROTKB|E9PIF2 [details] [associations]
symbol:DDX10 "Probable ATP-dependent RNA helicase DDX10"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313
Pfam:PF13959 HGNC:HGNC:2735 ChiTaRS:DDX10 EMBL:AP002453
EMBL:AP003027 EMBL:AP003387 IPI:IPI00982941
ProteinModelPortal:E9PIF2 SMR:E9PIF2 Ensembl:ENST00000526794
UCSC:uc001pkl.1 ArrayExpress:E9PIF2 Bgee:E9PIF2 Uniprot:E9PIF2
Length = 835
Score = 325 (119.5 bits), Expect = 2.7e-45, Sum P(2) = 2.7e-45
Identities = 87/242 (35%), Positives = 130/242 (53%)
Query: 7 KKETVKEIFASCSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATG 66
+K V EI FS L L+E + T++Q Q I + L G+ VL A TG
Sbjct: 61 EKINVNEI---TRFSDFPLSKKTLKGLQEAQ-YRLVTEIQKQTIGLALQGKDVLGAAKTG 116
Query: 67 TGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPG 126
+GKT+A+L P++ L Y + + G L++ PTREL Q +E+L K+ + H G
Sbjct: 117 SGKTLAFLVPVLEAL--YRLQWTSTDGLGVLIISPTRELAYQTFEVLRKV-GKNHDFSAG 173
Query: 127 YVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGF 186
++GG++ E R+ I+ILV TPGRLL H+ T SF T+L+ ++ DEADRIL++GF
Sbjct: 174 LIIGGKDLKHEAERINN-INILVCTPGRLLQHMDETVSFHATDLQMLVLDEADRILDMGF 232
Query: 187 GKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLD 246
+ +++ L KRQ LL SAT + V LA++SL+ P + +
Sbjct: 233 ADTMNAVIENLPK---------------KRQTLLFSATQTKSVKDLARLSLKNPEYVWVH 277
Query: 247 EK 248
EK
Sbjct: 278 EK 279
Score = 223 (83.6 bits), Expect = 2.7e-45, Sum P(2) = 2.7e-45
Identities = 52/154 (33%), Positives = 81/154 (52%)
Query: 307 LSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRL 366
+S+L + + +K +VFFS+C V + Y + + P + + L
Sbjct: 301 ISVLYSFLRSHLKKKSIVFFSSCKEVQYLYRVFCRLR------PGVSI---------LAL 345
Query: 367 HGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRVGR 426
HG +Q R + F ++ A+L +TD+AARGLDFP V ++Q+D +A Y+HR GR
Sbjct: 346 HGRQQQMRRMEVYNEFVRKRAAVLFATDIAARGLDFPAVNWVLQFDCPEDANTYIHRAGR 405
Query: 427 TARLGERGDSLLFLQPVEMDYLQDLEKHGVSLTE 460
TAR E G++LL L P E +Q L + V + E
Sbjct: 406 TARYKEDGEALLILLPSEKAMVQQLLQKKVPVKE 439
>UNIPROTKB|Q13206 [details] [associations]
symbol:DDX10 "Probable ATP-dependent RNA helicase DDX10"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003724 "RNA helicase
activity" evidence=TAS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:CH471065
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014
PROSITE:PS51195 KO:K14776 InterPro:IPR025313 Pfam:PF13959
HOGENOM:HOG000268801 CTD:1662 HOVERGEN:HBG102756 OrthoDB:EOG4BK536
EMBL:U28042 EMBL:AB040537 EMBL:AK315216 EMBL:BC091521 EMBL:BC093654
EMBL:BC093656 IPI:IPI00297900 RefSeq:NP_004389.2 UniGene:Hs.591931
PDB:2PL3 PDBsum:2PL3 ProteinModelPortal:Q13206 SMR:Q13206
IntAct:Q13206 STRING:Q13206 PhosphoSite:Q13206 DMDM:76803554
SWISS-2DPAGE:Q13206 PaxDb:Q13206 PeptideAtlas:Q13206 PRIDE:Q13206
Ensembl:ENST00000322536 GeneID:1662 KEGG:hsa:1662 UCSC:uc001pkm.3
GeneCards:GC11P108569 HGNC:HGNC:2735 HPA:HPA004691 MIM:601235
neXtProt:NX_Q13206 PharmGKB:PA27200 InParanoid:Q13206 OMA:ADKVIEP
ChiTaRS:DDX10 EvolutionaryTrace:Q13206 GenomeRNAi:1662 NextBio:6838
ArrayExpress:Q13206 Bgee:Q13206 CleanEx:HS_DDX10
Genevestigator:Q13206 GermOnline:ENSG00000178105 Uniprot:Q13206
Length = 875
Score = 325 (119.5 bits), Expect = 3.2e-45, Sum P(2) = 3.2e-45
Identities = 87/242 (35%), Positives = 130/242 (53%)
Query: 7 KKETVKEIFASCSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATG 66
+K V EI FS L L+E + T++Q Q I + L G+ VL A TG
Sbjct: 61 EKINVNEI---TRFSDFPLSKKTLKGLQEAQ-YRLVTEIQKQTIGLALQGKDVLGAAKTG 116
Query: 67 TGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPG 126
+GKT+A+L P++ L Y + + G L++ PTREL Q +E+L K+ + H G
Sbjct: 117 SGKTLAFLVPVLEAL--YRLQWTSTDGLGVLIISPTRELAYQTFEVLRKV-GKNHDFSAG 173
Query: 127 YVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGF 186
++GG++ E R+ I+ILV TPGRLL H+ T SF T+L+ ++ DEADRIL++GF
Sbjct: 174 LIIGGKDLKHEAERINN-INILVCTPGRLLQHMDETVSFHATDLQMLVLDEADRILDMGF 232
Query: 187 GKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLD 246
+ +++ L KRQ LL SAT + V LA++SL+ P + +
Sbjct: 233 ADTMNAVIENLPK---------------KRQTLLFSATQTKSVKDLARLSLKNPEYVWVH 277
Query: 247 EK 248
EK
Sbjct: 278 EK 279
Score = 223 (83.6 bits), Expect = 3.2e-45, Sum P(2) = 3.2e-45
Identities = 52/154 (33%), Positives = 81/154 (52%)
Query: 307 LSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRL 366
+S+L + + +K +VFFS+C V + Y + + P + + L
Sbjct: 301 ISVLYSFLRSHLKKKSIVFFSSCKEVQYLYRVFCRLR------PGVSI---------LAL 345
Query: 367 HGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRVGR 426
HG +Q R + F ++ A+L +TD+AARGLDFP V ++Q+D +A Y+HR GR
Sbjct: 346 HGRQQQMRRMEVYNEFVRKRAAVLFATDIAARGLDFPAVNWVLQFDCPEDANTYIHRAGR 405
Query: 427 TARLGERGDSLLFLQPVEMDYLQDLEKHGVSLTE 460
TAR E G++LL L P E +Q L + V + E
Sbjct: 406 TARYKEDGEALLILLPSEKAMVQQLLQKKVPVKE 439
>UNIPROTKB|I3L976 [details] [associations]
symbol:DDX47 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0008380 "RNA splicing" evidence=IEA] [GO:0006915
"apoptotic process" evidence=IEA] [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0006915
GO:GO:0005730 GO:GO:0008380 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00670000098028
OMA:IFIPSKF Ensembl:ENSSSCT00000025539 Uniprot:I3L976
Length = 456
Score = 333 (122.3 bits), Expect = 8.9e-45, Sum P(2) = 8.9e-45
Identities = 88/260 (33%), Positives = 138/260 (53%)
Query: 9 ETVKEIFASCSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTG 68
+T E + +F LG+ LC+ ++LG+ PTK+Q +AIP+ L GR ++ A TG+G
Sbjct: 14 QTAVEEEETKTFKDLGVTDVLCEAC-DQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSG 72
Query: 69 KTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYV 128
KT A+ PI+N L R+ FALVL PTREL Q+ E L + +
Sbjct: 73 KTGAFALPILNALLETPQRL------FALVLTPTRELAFQISEQFEALGSSIG-VQCAVI 125
Query: 129 MGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGK 188
+GG + + L K I++ATPGRL+DHL++T F L++++ DEADRIL + F
Sbjct: 126 VGGIDSMSQSLALAKKPHIVIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFET 185
Query: 189 EIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEK 248
E+++IL ++ R+ R+ L SAT+ +KV L + +L+ PV + K
Sbjct: 186 EVDKILKVI-PRD--------------RKTFLFSATMTKKVQKLQRAALKNPVKCAVSSK 230
Query: 249 KLPEDKSHVRFGSLESDVKE 268
+K + + S K+
Sbjct: 231 YQTVEKLQQYYLFIPSKFKD 250
Score = 171 (65.3 bits), Expect = 8.9e-45, Sum P(2) = 8.9e-45
Identities = 31/66 (46%), Positives = 44/66 (66%)
Query: 366 LHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRVG 425
LHG M Q R + FK + +++LL+TDVA+RGLD P V ++ +D + +Y+HRVG
Sbjct: 292 LHGQMSQSKRLGSLNKFKAKARSILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVG 351
Query: 426 RTARLG 431
RTAR G
Sbjct: 352 RTARAG 357
>UNIPROTKB|E2RC35 [details] [associations]
symbol:DDX10 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 KO:K14776
InterPro:IPR025313 Pfam:PF13959 GeneTree:ENSGT00550000074980
CTD:1662 OMA:ADKVIEP EMBL:AAEX03003508 RefSeq:XP_536583.2
Ensembl:ENSCAFT00000022758 GeneID:479448 KEGG:cfa:479448
Uniprot:E2RC35
Length = 871
Score = 327 (120.2 bits), Expect = 9.6e-45, Sum P(2) = 9.6e-45
Identities = 89/242 (36%), Positives = 129/242 (53%)
Query: 7 KKETVKEIFASCSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATG 66
+K V EI FS L L+E + T++Q Q I + L G+ VL A TG
Sbjct: 61 EKINVNEI---TRFSDFPLSKKTLKGLQEAQ-YRLVTEIQKQTIGLALQGKDVLGAAKTG 116
Query: 67 TGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPG 126
+GKT+A+L P++ L Y + + G L++ PTREL Q +E+L K+ + H G
Sbjct: 117 SGKTLAFLVPVLEAL--YRLQWTSTDGLGVLIISPTRELAYQTFEVLRKV-GKNHDFSAG 173
Query: 127 YVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGF 186
++GG++ E R+ I+ILV TPGRLL H+ T F TNL+ ++ DEADRIL++GF
Sbjct: 174 LIIGGKDLKHEAERINN-INILVCTPGRLLQHMDETICFHATNLQMLVLDEADRILDMGF 232
Query: 187 GKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLD 246
+ I++ L KRQ LL SAT + V LA++SL+ P I +
Sbjct: 233 ADTMNAIIENLPK---------------KRQTLLFSATQTKSVKDLARLSLKNPEYIWVH 277
Query: 247 EK 248
EK
Sbjct: 278 EK 279
Score = 216 (81.1 bits), Expect = 9.6e-45, Sum P(2) = 9.6e-45
Identities = 52/155 (33%), Positives = 81/155 (52%)
Query: 307 LSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRL 366
+S+L + + +K +VFFS+C V + Y + + P + + L
Sbjct: 301 ISVLYSFLRSHLKKKSIVFFSSCKEVQYLYRVFCRLR------PGISI---------LAL 345
Query: 367 HGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRVGR 426
HG +Q R + F ++ A+L +TD+AARGLDFP V ++Q+D +A Y+HR GR
Sbjct: 346 HGRQQQMRRMEVYNEFVRKRSAVLFATDIAARGLDFPAVNWVLQFDCPEDANTYIHRAGR 405
Query: 427 TARLGERGDSLLFLQPVE-MDYLQDLEKHGVSLTE 460
TAR E G++LL L P E +Q L + V + E
Sbjct: 406 TARYKEDGEALLILLPSEEKGMVQQLLQKKVPVKE 440
>UNIPROTKB|Q08DT0 [details] [associations]
symbol:DDX10 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K14776
InterPro:IPR025313 Pfam:PF13959 HOGENOM:HOG000268801
GeneTree:ENSGT00550000074980 CTD:1662 HOVERGEN:HBG102756
OrthoDB:EOG4BK536 OMA:ADKVIEP EMBL:DAAA02040206 EMBL:DAAA02040207
EMBL:DAAA02040208 EMBL:DAAA02040209 EMBL:DAAA02040210
EMBL:DAAA02040211 EMBL:DAAA02040212 EMBL:DAAA02040213
EMBL:DAAA02040214 EMBL:DAAA02040215 EMBL:DAAA02040216
EMBL:DAAA02040217 EMBL:BC123579 IPI:IPI00717487
RefSeq:NP_001070349.1 UniGene:Bt.63620 SMR:Q08DT0
Ensembl:ENSBTAT00000003086 GeneID:528483 KEGG:bta:528483
InParanoid:Q08DT0 NextBio:20874836 Uniprot:Q08DT0
Length = 876
Score = 326 (119.8 bits), Expect = 1.1e-44, Sum P(2) = 1.1e-44
Identities = 88/242 (36%), Positives = 129/242 (53%)
Query: 7 KKETVKEIFASCSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATG 66
+K V EI FS L L+E + T++Q Q I + L G+ VL A TG
Sbjct: 61 EKINVNEI---TRFSDFPLSKKTLKGLQEAQ-YRLVTEIQKQTIGLALQGKDVLGAAKTG 116
Query: 67 TGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPG 126
+GKT+A+L P++ L Y + + G L++ PTREL Q +E+L K+ + H G
Sbjct: 117 SGKTLAFLVPVLEAL--YRLQWTSADGLGVLIISPTRELAYQTFEVLRKV-GKNHDFSAG 173
Query: 127 YVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGF 186
++GG++ E R+ I+ILV TPGRLL H+ T F TNL+ ++ DEADRIL++GF
Sbjct: 174 LIIGGKDLKHEAERINN-INILVCTPGRLLQHMDETICFHATNLQMLVLDEADRILDMGF 232
Query: 187 GKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLD 246
+ I++ L KRQ LL SAT + V LA++SL+ P + +
Sbjct: 233 ADTMNAIIENLPK---------------KRQTLLFSATQTKSVKDLARLSLKNPEYVWVH 277
Query: 247 EK 248
EK
Sbjct: 278 EK 279
Score = 217 (81.4 bits), Expect = 1.1e-44, Sum P(2) = 1.1e-44
Identities = 53/155 (34%), Positives = 81/155 (52%)
Query: 307 LSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRL 366
+S+L + + +K +VFFS+C V + Y + + P + L L
Sbjct: 301 ISVLYSFLRSHLKKKSIVFFSSCKEVQYLYRVFCRLR------PGVSL---------LAL 345
Query: 367 HGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRVGR 426
HG +Q R + F ++ A+L +TD+AARGLDFP V ++Q+D +A Y+HR GR
Sbjct: 346 HGRQQQMRRMEVYNEFVRKRAAVLFATDIAARGLDFPAVNWVLQFDCPEDANTYIHRAGR 405
Query: 427 TARLGERGDSLLFLQPVE-MDYLQDLEKHGVSLTE 460
TAR E G++LL L P E +Q L + V + E
Sbjct: 406 TARYKEDGEALLILLPSEEKGMVQQLLQKKVPVKE 440
>RGD|1308990 [details] [associations]
symbol:Ddx10 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 10"
species:10116 "Rattus norvegicus" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 RGD:1308990
GO:GO:0005524 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:CH473975 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 KO:K14776 InterPro:IPR025313 Pfam:PF13959
GeneTree:ENSGT00550000074980 CTD:1662 OrthoDB:EOG4BK536 OMA:ADKVIEP
IPI:IPI00869603 RefSeq:NP_001100290.1 UniGene:Rn.99481
Ensembl:ENSRNOT00000017683 GeneID:300710 KEGG:rno:300710
UCSC:RGD:1308990 NextBio:647348 Uniprot:D3ZBY5
Length = 874
Score = 325 (119.5 bits), Expect = 1.1e-44, Sum P(2) = 1.1e-44
Identities = 88/242 (36%), Positives = 129/242 (53%)
Query: 7 KKETVKEIFASCSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATG 66
+K V EI FS L L+E + T++Q Q I + L G+ VL A TG
Sbjct: 61 EKINVNEI---TRFSDFPLSKKTLKGLQEAQ-YRLVTEIQKQTIGLALQGKDVLGAAKTG 116
Query: 67 TGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPG 126
+GKT+A+L P++ L Y + + G L++ PTREL Q +E+L K+ + H G
Sbjct: 117 SGKTLAFLVPVLEAL--YRLQWTSTDGLGVLIISPTRELAYQTFEVLRKV-GKNHDFSAG 173
Query: 127 YVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGF 186
++GG++ E R+ I+ILV TPGRLL H+ T F TNL+ ++ DEADRIL++GF
Sbjct: 174 LIIGGKDLKHEAERINN-INILVCTPGRLLQHMDETICFHATNLQMLVLDEADRILDMGF 232
Query: 187 GKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLD 246
+ I++ L KRQ LL SAT + V LA++SL+ P + +
Sbjct: 233 ADTMNAIIENLPK---------------KRQTLLFSATQTKSVKDLARLSLKDPEYVWVH 277
Query: 247 EK 248
EK
Sbjct: 278 EK 279
Score = 218 (81.8 bits), Expect = 1.1e-44, Sum P(2) = 1.1e-44
Identities = 58/181 (32%), Positives = 94/181 (51%)
Query: 307 LSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRL 366
+S+L + +++K +VFFS+C V + Y + + P + + L
Sbjct: 301 ISVLFSFLRSHLTKKSIVFFSSCKEVQYLYRVFCRLR------PGISI---------LAL 345
Query: 367 HGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRVGR 426
HG +Q R + F ++ A+L +TD+AARGLDFP V ++Q+D +A Y+HR GR
Sbjct: 346 HGRQQQMRRMEVYNEFVRKRAAVLFATDIAARGLDFPAVNWVLQFDCPEDANTYIHRAGR 405
Query: 427 TARLGERGDSLLFLQPVE-MDYLQDLEKHGVSLTEYPLLKVLDSFPLYGQKPRVKKFLTT 485
TAR E G++LL L P E +Q L + V + E +K+ + QK R++ FL
Sbjct: 406 TARYKEDGEALLILLPSEEQGMVQQLLQKKVPVKE---IKINPEKLIDVQK-RLESFLAQ 461
Query: 486 E 486
+
Sbjct: 462 D 462
>CGD|CAL0004182 [details] [associations]
symbol:HCA4 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0006364 "rRNA processing" evidence=IEA] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 CGD:CAL0004182 GO:GO:0005524 GO:GO:0005730
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 EMBL:AACQ01000023 EMBL:AACQ01000025
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
RefSeq:XP_720233.1 RefSeq:XP_720463.1 ProteinModelPortal:Q5AF95
STRING:Q5AF95 GeneID:3637911 GeneID:3638091 KEGG:cal:CaO19.10227
KEGG:cal:CaO19.2712 KO:K14776 InterPro:IPR025313 Pfam:PF13959
Uniprot:Q5AF95
Length = 765
Score = 330 (121.2 bits), Expect = 2.0e-44, Sum P(2) = 2.0e-44
Identities = 87/231 (37%), Positives = 130/231 (56%)
Query: 16 ASCS-FSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYL 74
AS S FS L + L+E F + T +Q + IP+ L G ++ A TG+GKT+A+L
Sbjct: 45 ASVSQFSDLPITENTLKGLKEAT-FVSLTDIQKKTIPIALKGEDLMGTARTGSGKTLAFL 103
Query: 75 APIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENR 134
P+I L +I G AL++ PTREL +Q++E+L K+ +++ G V GG++
Sbjct: 104 IPVIESL--IRNKITEYDGLAALIVSPTRELAVQIFEVLTKI-GKYNTFSAGLVTGGKDV 160
Query: 135 SKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEIL 194
EK R+ + ++ILV TPGR+ HL +NL+ ++ DEADR L++GF K+I+ IL
Sbjct: 161 QFEKERVSR-MNILVGTPGRISQHLNEAVGMETSNLQVLVLDEADRCLDMGFKKQIDNIL 219
Query: 195 DILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGL 245
L + RQ LL SAT +E VN LA++SL P IG+
Sbjct: 220 GHLPTT---------------RQTLLFSATQSESVNDLARLSLTNPNKIGV 255
Score = 207 (77.9 bits), Expect = 2.0e-44, Sum P(2) = 2.0e-44
Identities = 53/151 (35%), Positives = 76/151 (50%)
Query: 307 LSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRL 366
L +L + + K++VFFS+ V + Y Q P + L +L
Sbjct: 281 LDVLWSFIKSHLKSKILVFFSSSKQVQYTYETFRTLQ------PGISL---------MKL 325
Query: 367 HGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRVGR 426
+G KQ R T F + A L +TD+ ARGLDFP + ++Q D +A YVHRVGR
Sbjct: 326 YGRHKQTSRLETTMKFSQAQHACLFATDIVARGLDFPAIDWVVQVDCPEDAATYVHRVGR 385
Query: 427 TARLGERGDSLLFLQPVEMD-YLQDLEKHGV 456
+AR G +G SLL L P E + L+ L+ H +
Sbjct: 386 SARFGRKGKSLLMLLPSEEEGMLKRLKIHKI 416
>MGI|MGI:1924841 [details] [associations]
symbol:Ddx10 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 10"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 MGI:MGI:1924841 GO:GO:0005524
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K14776 InterPro:IPR025313 Pfam:PF13959 HOGENOM:HOG000268801
GeneTree:ENSGT00550000074980 CTD:1662 HOVERGEN:HBG102756
OrthoDB:EOG4BK536 OMA:ADKVIEP ChiTaRS:DDX10 EMBL:BC049261
IPI:IPI00896604 RefSeq:NP_084212.2 UniGene:Mm.133560
ProteinModelPortal:Q80Y44 SMR:Q80Y44 STRING:Q80Y44
PhosphoSite:Q80Y44 PaxDb:Q80Y44 PRIDE:Q80Y44
Ensembl:ENSMUST00000065630 GeneID:77591 KEGG:mmu:77591
UCSC:uc009plz.2 InParanoid:Q80Y44 NextBio:347162 Bgee:Q80Y44
CleanEx:MM_DDX10 Genevestigator:Q80Y44
GermOnline:ENSMUSG00000053289 Uniprot:Q80Y44
Length = 875
Score = 325 (119.5 bits), Expect = 2.2e-44, Sum P(2) = 2.2e-44
Identities = 88/242 (36%), Positives = 129/242 (53%)
Query: 7 KKETVKEIFASCSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATG 66
+K V EI FS L L+E + T++Q Q I + L G+ VL A TG
Sbjct: 61 EKINVNEI---TRFSDFPLSKKTLKGLQEAQ-YRLVTEIQKQTIGLALQGKDVLGAAKTG 116
Query: 67 TGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPG 126
+GKT+A+L P++ L Y + + G L++ PTREL Q +E+L K+ + H G
Sbjct: 117 SGKTLAFLVPVLEAL--YRLQWTSTDGLGVLIISPTRELAYQTFEVLRKV-GKNHDFSAG 173
Query: 127 YVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGF 186
++GG++ E R+ I+ILV TPGRLL H+ T F TNL+ ++ DEADRIL++GF
Sbjct: 174 LIIGGKDLKHEAERINN-INILVCTPGRLLQHMDETICFHATNLQMLVLDEADRILDMGF 232
Query: 187 GKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLD 246
+ I++ L KRQ LL SAT + V LA++SL+ P + +
Sbjct: 233 ADTMNAIIENLPK---------------KRQTLLFSATQTKSVKDLARLSLKDPEYVWVH 277
Query: 247 EK 248
EK
Sbjct: 278 EK 279
Score = 215 (80.7 bits), Expect = 2.2e-44, Sum P(2) = 2.2e-44
Identities = 52/155 (33%), Positives = 81/155 (52%)
Query: 307 LSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRL 366
+S+L + + +K +VFFS+C V + Y + + P + + L
Sbjct: 301 ISVLFSFLRSHLKKKSIVFFSSCKEVQYLYRVFCRLR------PGISI---------LAL 345
Query: 367 HGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRVGR 426
HG +Q R + F ++ A+L +TD+AARGLDFP V ++Q+D +A Y+HR GR
Sbjct: 346 HGRQQQMRRMEVYNEFVRKRAAVLFATDIAARGLDFPAVNWVLQFDCPEDANTYIHRAGR 405
Query: 427 TARLGERGDSLLFLQPVE-MDYLQDLEKHGVSLTE 460
TAR E G++LL L P E +Q L + V + E
Sbjct: 406 TARYKEDGEALLILLPSEEQGMVQQLLQKKVPVKE 440
>UNIPROTKB|F1NA53 [details] [associations]
symbol:DDX49 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00670000098028 EMBL:AADN02071779 EMBL:AADN02071780
IPI:IPI00684751 ProteinModelPortal:F1NA53
Ensembl:ENSGALT00000004949 ArrayExpress:F1NA53 Uniprot:F1NA53
Length = 402
Score = 308 (113.5 bits), Expect = 1.8e-43, Sum P(2) = 1.8e-43
Identities = 91/272 (33%), Positives = 140/272 (51%)
Query: 19 SFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPII 78
+F LGL L +Q R+ +G PT VQA IP IL GR L A TG+GKT A++ P++
Sbjct: 3 AFRELGLAPWLVEQARQ-MGLSRPTPVQASCIPPILQGRDCLGCAKTGSGKTAAFVLPVL 61
Query: 79 NHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEK 138
L S P G F LVL PTREL Q+ E ++L + + V+GG + +
Sbjct: 62 QVL-SEDPY-----GIFCLVLTPTRELAYQIAEQF-RVLGKPLGLKDCVVVGGLDMVAQA 114
Query: 139 ARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELG---FGKEIEEILD 195
L + +++ATPGRL DHL+ +++F L++++ DEADR+LE G F ++E IL+
Sbjct: 115 LELSRKPHVVIATPGRLADHLRSSNTFSLKKLKFLVLDEADRLLEQGCADFTADLEVILE 174
Query: 196 ILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLPEDKS 255
+ +R RQ LL SATL + +N L +++ P + D+
Sbjct: 175 AVPAR---------------RQTLLFSATLTDTLNELKSLAMNRPFFWEAASEVRTVDEL 219
Query: 256 HVRFGSLESDVKEE-VEHPSTTMRSTTEDFKL 286
R+ + VK+ + H T + ED+ +
Sbjct: 220 DQRYLLVPEAVKDAYLVHLIQTFQDEHEDWSI 251
Score = 176 (67.0 bits), Expect = 1.8e-43, Sum P(2) = 1.8e-43
Identities = 43/124 (34%), Positives = 69/124 (55%)
Query: 351 DMELKQLFLRCKTF---RLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKC 407
+ ++ + LR +F LH MKQ R FK+ +L++TDVAARGLD P V+
Sbjct: 260 ECQILNMMLRKFSFPSVALHSMMKQRQRFAALAKFKSSIFKILIATDVAARGLDIPTVQV 319
Query: 408 IIQYDSAGEATEYVHRVGRTARLGERGDSLLFLQPVEMDYLQDLEKH-GVSLTEYPLLK- 465
+I +++ G Y+HRVGRTAR G G S+ + ++ + +E+ + L E+ + +
Sbjct: 320 VINHNTPGLPKIYIHRVGRTARAGRNGISITMVTQYDIHLVHAIEEEIKLKLQEFSVEEK 379
Query: 466 -VLD 468
VLD
Sbjct: 380 LVLD 383
>UNIPROTKB|F1NQV5 [details] [associations]
symbol:DDX27 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00550000074997 EMBL:AADN02019007 IPI:IPI00579774
Ensembl:ENSGALT00000039062 ArrayExpress:F1NQV5 Uniprot:F1NQV5
Length = 758
Score = 347 (127.2 bits), Expect = 2.0e-43, Sum P(2) = 2.0e-43
Identities = 91/235 (38%), Positives = 134/235 (57%)
Query: 9 ETVKEIFASCSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTG 68
E E + SF + L L + LGF+ PT +Q IPV L G+ + AATGTG
Sbjct: 171 EDASEYDDNLSFQDMNLSRPLLKAITA-LGFKQPTPIQKACIPVGLLGKDICACAATGTG 229
Query: 69 KTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYV 128
KT A++ P++ L Y PR ++ T LVLVPTREL +QV+ + K L +F +
Sbjct: 230 KTAAFILPVLERL-IYKPR--QAPITRVLVLVPTRELGIQVHSVT-KQLAQFSSVTTCLA 285
Query: 129 MGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGK 188
+GG + ++A LR G IL+ATPGRL+DHL + SF +++ +I DEADR+L+ F +
Sbjct: 286 VGGLDVKTQEAALRSGPDILIATPGRLIDHLHNCPSFHLSSVEVLILDEADRMLDEYFEE 345
Query: 189 EIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLI 243
+++EI+ + SR+ RQ +L SAT+ E+V LA +SL+ P I
Sbjct: 346 QMKEIIRLC-SRH--------------RQTMLFSATMTEEVKDLASVSLKNPTRI 385
Score = 176 (67.0 bits), Expect = 2.0e-43, Sum P(2) = 2.0e-43
Identities = 38/88 (43%), Positives = 50/88 (56%)
Query: 366 LHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRVG 425
LHGN+ Q R FK E+ +L++TDVAARGLD VK +I + YVHRVG
Sbjct: 455 LHGNLSQAQRLEALRRFKDEQIDILVATDVAARGLDIEGVKTVINFTMPNTTKHYVHRVG 514
Query: 426 RTARLGERGDSLLFLQPVEMDYLQDLEK 453
RTAR G G S+ + E L+++ K
Sbjct: 515 RTARAGRAGRSVSLVGEEERKMLKEIVK 542
>UNIPROTKB|Q48AV0 [details] [associations]
symbol:CPS_0042 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_266818.1 ProteinModelPortal:Q48AV0
GeneID:3521124 KEGG:cps:CPS_0042 PATRIC:21463513 OMA:AITESAY
BioCyc:CPSY167879:GI48-153-MONOMER Uniprot:Q48AV0
Length = 420
Score = 320 (117.7 bits), Expect = 2.5e-43, Sum P(2) = 2.5e-43
Identities = 76/180 (42%), Positives = 109/180 (60%)
Query: 19 SFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPII 78
+FSS L STL + E ++ PT++Q Q+IP+IL+ V+ A TGTGKT A+ PI+
Sbjct: 6 TFSSFSLDSTLLKAITES-AYDEPTEIQKQSIPLILAKHDVMARAQTGTGKTAAFALPIL 64
Query: 79 NHLQSYSPRIDRSSGTFALVLVPTRELCLQVYE-ILHKLLHRFHWIVPGYVMGGENRSKE 137
L S P ALVL PTREL QV++ H +F + G GG + K+
Sbjct: 65 QQLISVQPCKPELR---ALVLTPTRELAQQVHKSFCH--YGQFTDVTIGIAYGGVSTKKQ 119
Query: 138 KARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDIL 197
+ L+ G+ IL+ATPGRLLD L+ T S +N+ ++FDEADR+L++GF +EI++I L
Sbjct: 120 ISELKVGVDILIATPGRLLDLLR-TESVSLSNIETLVFDEADRMLDMGFKEEIDQITQYL 178
Score = 199 (75.1 bits), Expect = 2.3e-25, Sum P(2) = 2.3e-25
Identities = 55/162 (33%), Positives = 90/162 (55%)
Query: 113 LHK-LLH--RFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTN 169
+HK H +F + G GG + K+ + L+ G+ IL+ATPGRLLD L+ T S +N
Sbjct: 92 VHKSFCHYGQFTDVTIGIAYGGVSTKKQISELKVGVDILIATPGRLLDLLR-TESVSLSN 150
Query: 170 LRWIIFDEADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKV 229
+ ++FDEADR+L++GF +EI++I L +Q LL SAT + +
Sbjct: 151 IETLVFDEADRMLDMGFKEEIDQITQYLPKT---------------KQTLLFSATFADDI 195
Query: 230 NHLAKISLETPVLIGLDEK-KLPEDKSHVRFGSLESDVKEEV 270
++K L P ++ +DEK K +D + +G +++D K E+
Sbjct: 196 YKMSKNILVEPKMVEIDEKNKAADDVEQLVYG-VDADRKREL 236
Score = 161 (61.7 bits), Expect = 2.5e-43, Sum P(2) = 2.5e-43
Identities = 35/92 (38%), Positives = 51/92 (55%)
Query: 362 KTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYV 421
K+ +HG+ Q R FK K L++TDVAARG+D + +I Y+ A +YV
Sbjct: 272 KSLAIHGDKSQGAREKALHEFKEGKVRALIATDVAARGIDIKGLSHVINYELPYNAEDYV 331
Query: 422 HRVGRTARLGERGDSLLFLQPVEMDYLQDLEK 453
HR+GRTAR G G ++ + P E L +E+
Sbjct: 332 HRIGRTARAGNSGLAVSLVSPGEEWLLTAIEE 363
>TIGR_CMR|CPS_0042 [details] [associations]
symbol:CPS_0042 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_266818.1 ProteinModelPortal:Q48AV0
GeneID:3521124 KEGG:cps:CPS_0042 PATRIC:21463513 OMA:AITESAY
BioCyc:CPSY167879:GI48-153-MONOMER Uniprot:Q48AV0
Length = 420
Score = 320 (117.7 bits), Expect = 2.5e-43, Sum P(2) = 2.5e-43
Identities = 76/180 (42%), Positives = 109/180 (60%)
Query: 19 SFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPII 78
+FSS L STL + E ++ PT++Q Q+IP+IL+ V+ A TGTGKT A+ PI+
Sbjct: 6 TFSSFSLDSTLLKAITES-AYDEPTEIQKQSIPLILAKHDVMARAQTGTGKTAAFALPIL 64
Query: 79 NHLQSYSPRIDRSSGTFALVLVPTRELCLQVYE-ILHKLLHRFHWIVPGYVMGGENRSKE 137
L S P ALVL PTREL QV++ H +F + G GG + K+
Sbjct: 65 QQLISVQPCKPELR---ALVLTPTRELAQQVHKSFCH--YGQFTDVTIGIAYGGVSTKKQ 119
Query: 138 KARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDIL 197
+ L+ G+ IL+ATPGRLLD L+ T S +N+ ++FDEADR+L++GF +EI++I L
Sbjct: 120 ISELKVGVDILIATPGRLLDLLR-TESVSLSNIETLVFDEADRMLDMGFKEEIDQITQYL 178
Score = 199 (75.1 bits), Expect = 2.3e-25, Sum P(2) = 2.3e-25
Identities = 55/162 (33%), Positives = 90/162 (55%)
Query: 113 LHK-LLH--RFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTN 169
+HK H +F + G GG + K+ + L+ G+ IL+ATPGRLLD L+ T S +N
Sbjct: 92 VHKSFCHYGQFTDVTIGIAYGGVSTKKQISELKVGVDILIATPGRLLDLLR-TESVSLSN 150
Query: 170 LRWIIFDEADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKV 229
+ ++FDEADR+L++GF +EI++I L +Q LL SAT + +
Sbjct: 151 IETLVFDEADRMLDMGFKEEIDQITQYLPKT---------------KQTLLFSATFADDI 195
Query: 230 NHLAKISLETPVLIGLDEK-KLPEDKSHVRFGSLESDVKEEV 270
++K L P ++ +DEK K +D + +G +++D K E+
Sbjct: 196 YKMSKNILVEPKMVEIDEKNKAADDVEQLVYG-VDADRKREL 236
Score = 161 (61.7 bits), Expect = 2.5e-43, Sum P(2) = 2.5e-43
Identities = 35/92 (38%), Positives = 51/92 (55%)
Query: 362 KTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYV 421
K+ +HG+ Q R FK K L++TDVAARG+D + +I Y+ A +YV
Sbjct: 272 KSLAIHGDKSQGAREKALHEFKEGKVRALIATDVAARGIDIKGLSHVINYELPYNAEDYV 331
Query: 422 HRVGRTARLGERGDSLLFLQPVEMDYLQDLEK 453
HR+GRTAR G G ++ + P E L +E+
Sbjct: 332 HRIGRTARAGNSGLAVSLVSPGEEWLLTAIEE 363
>ZFIN|ZDB-GENE-031001-8 [details] [associations]
symbol:ddx27 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
27" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-031001-8 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 CTD:55661 HOGENOM:HOG000265456
HOVERGEN:HBG106162 KO:K13181 EMBL:AY648729 IPI:IPI00501087
RefSeq:NP_001002869.1 UniGene:Dr.76523 ProteinModelPortal:Q6DRN0
PRIDE:Q6DRN0 GeneID:378844 KEGG:dre:378844 InParanoid:Q6DRN0
NextBio:20813841 ArrayExpress:Q6DRN0 Bgee:Q6DRN0 Uniprot:Q6DRN0
Length = 776
Score = 343 (125.8 bits), Expect = 3.1e-43, Sum P(2) = 3.1e-43
Identities = 86/235 (36%), Positives = 133/235 (56%)
Query: 9 ETVKEIFASCSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTG 68
E + + +F + L L + +GF+ PT +Q +PV L G+ + AATGTG
Sbjct: 192 EDASQYDENLTFHDMNLSRPLLKAI-STMGFKQPTPIQKACVPVGLLGKDICACAATGTG 250
Query: 69 KTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYV 128
KT A++ P++ L Y PR + T LVLVPTREL +QV+ + +L +F I
Sbjct: 251 KTAAFMLPVLERL-IYKPR--ETQVTRVLVLVPTRELGIQVHTVARQLA-QFTTISTCLA 306
Query: 129 MGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGK 188
+GG + ++A LR G +L+ATPGRL+DHL +T SF + + +I DEADR+L+ F +
Sbjct: 307 VGGLDLKSQEAALRAGPDVLIATPGRLIDHLHNTPSFELSQIEILILDEADRMLDEYFEE 366
Query: 189 EIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLI 243
+++EI+ + +RQ +L SAT++E+V LA +SL+ PV I
Sbjct: 367 QMKEIIRMCA---------------YQRQTMLFSATMSEEVKDLASVSLKQPVRI 406
Score = 180 (68.4 bits), Expect = 3.1e-43, Sum P(2) = 3.1e-43
Identities = 39/92 (42%), Positives = 53/92 (57%)
Query: 362 KTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYV 421
K LHGN+ Q R + FK E+ +L++TDVAARGLD VK +I + YV
Sbjct: 472 KVGELHGNLSQTQRLESLRRFKDEQIDILVATDVAARGLDIEGVKTVINFTMPNTVKHYV 531
Query: 422 HRVGRTARLGERGDSLLFLQPVEMDYLQDLEK 453
HRVGRTAR G+ G S+ + E L+++ K
Sbjct: 532 HRVGRTARAGKVGRSVSLVGETERKMLKEIVK 563
Score = 38 (18.4 bits), Expect = 2.0e-09, Sum P(2) = 2.0e-09
Identities = 17/60 (28%), Positives = 25/60 (41%)
Query: 224 TLNEKVNHLAKISLETPVLIGLDEKKLPEDKSHVRFGSLESDVKEEVEHPSTTMRSTTED 283
TL+EK+ K+ + V +EK E+K S + D +EE E ED
Sbjct: 81 TLDEKIE---KVRKKRKV----EEKSQKENKKTETSASKKHDDQEEEEEEEEDDEEEEED 133
>UNIPROTKB|Q8EBV7 [details] [associations]
symbol:SO_3388 "ATP-dependent RNA helicase DEAD box family"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
RefSeq:NP_718942.1 ProteinModelPortal:Q8EBV7 GeneID:1171066
KEGG:son:SO_3388 PATRIC:23526456 OMA:SHLVRSK ProtClustDB:CLSK907144
Uniprot:Q8EBV7
Length = 409
Score = 331 (121.6 bits), Expect = 3.4e-43, Sum P(2) = 3.4e-43
Identities = 77/176 (43%), Positives = 108/176 (61%)
Query: 19 SFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPII 78
SFS+L L++ L D L E LG++ PT +Q +AIP IL+ + V+ A TGTGKT A+ PI+
Sbjct: 2 SFSALSLNTQLVDTLAE-LGYQQPTPIQVEAIPAILTKQDVMAGAQTGTGKTAAFALPIL 60
Query: 79 NHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEK 138
L + + + ALVLVPTREL LQV + K I G GG + ++
Sbjct: 61 QLLMADNQSDHAAKAIRALVLVPTRELALQVQQSFVKYAKGTD-IRVGIAYGGVSIEAQQ 119
Query: 139 ARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEIL 194
A GI +L+ATPGRLLDHL+ + L+ L ++FDEADR+L++GF EI+ +L
Sbjct: 120 AVFNAGIDVLIATPGRLLDHLRQGALNLN-QLNTLVFDEADRMLDMGFMDEIQAVL 174
Score = 176 (67.0 bits), Expect = 2.8e-21, Sum P(2) = 2.8e-21
Identities = 51/148 (34%), Positives = 78/148 (52%)
Query: 126 GYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELG 185
G GG + ++A GI +L+ATPGRLLDHL+ + L+ L ++FDEADR+L++G
Sbjct: 107 GIAYGGVSIEAQQAVFNAGIDVLIATPGRLLDHLRQGALNLN-QLNTLVFDEADRMLDMG 165
Query: 186 FGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGL 245
F EI+ +L +V +RQ LL SATL++ + +K L P I +
Sbjct: 166 FMDEIQAVL--------------KQVP-AQRQTLLFSATLDDSIFSFSKNLLRDPKRIEV 210
Query: 246 DEKKLPEDKSHVRFGSLESDVKEE-VEH 272
+ + R +++SD K E V H
Sbjct: 211 AKPNTTAAQIEQRVYAIDSDRKTEFVSH 238
Score = 147 (56.8 bits), Expect = 3.4e-43, Sum P(2) = 3.4e-43
Identities = 32/100 (32%), Positives = 57/100 (57%)
Query: 353 ELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYD 412
+L +L + ++F HG++ Q R FK +L++TDVAARGLD +++ +I ++
Sbjct: 264 QLNKLGVATQSF--HGDLSQGAREKVLQEFKQGLVQVLVATDVAARGLDIAELQYVINFE 321
Query: 413 SAGEATEYVHRVGRTARLGERGDSLLFLQPVEMDYLQDLE 452
A +Y+HR+GRT R G G ++ + L+++E
Sbjct: 322 LPFIAEDYIHRIGRTGRAGSAGLAITLFSQEDALLLEEVE 361
>TIGR_CMR|SO_3388 [details] [associations]
symbol:SO_3388 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
RefSeq:NP_718942.1 ProteinModelPortal:Q8EBV7 GeneID:1171066
KEGG:son:SO_3388 PATRIC:23526456 OMA:SHLVRSK ProtClustDB:CLSK907144
Uniprot:Q8EBV7
Length = 409
Score = 331 (121.6 bits), Expect = 3.4e-43, Sum P(2) = 3.4e-43
Identities = 77/176 (43%), Positives = 108/176 (61%)
Query: 19 SFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPII 78
SFS+L L++ L D L E LG++ PT +Q +AIP IL+ + V+ A TGTGKT A+ PI+
Sbjct: 2 SFSALSLNTQLVDTLAE-LGYQQPTPIQVEAIPAILTKQDVMAGAQTGTGKTAAFALPIL 60
Query: 79 NHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEK 138
L + + + ALVLVPTREL LQV + K I G GG + ++
Sbjct: 61 QLLMADNQSDHAAKAIRALVLVPTRELALQVQQSFVKYAKGTD-IRVGIAYGGVSIEAQQ 119
Query: 139 ARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEIL 194
A GI +L+ATPGRLLDHL+ + L+ L ++FDEADR+L++GF EI+ +L
Sbjct: 120 AVFNAGIDVLIATPGRLLDHLRQGALNLN-QLNTLVFDEADRMLDMGFMDEIQAVL 174
Score = 176 (67.0 bits), Expect = 2.8e-21, Sum P(2) = 2.8e-21
Identities = 51/148 (34%), Positives = 78/148 (52%)
Query: 126 GYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELG 185
G GG + ++A GI +L+ATPGRLLDHL+ + L+ L ++FDEADR+L++G
Sbjct: 107 GIAYGGVSIEAQQAVFNAGIDVLIATPGRLLDHLRQGALNLN-QLNTLVFDEADRMLDMG 165
Query: 186 FGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGL 245
F EI+ +L +V +RQ LL SATL++ + +K L P I +
Sbjct: 166 FMDEIQAVL--------------KQVP-AQRQTLLFSATLDDSIFSFSKNLLRDPKRIEV 210
Query: 246 DEKKLPEDKSHVRFGSLESDVKEE-VEH 272
+ + R +++SD K E V H
Sbjct: 211 AKPNTTAAQIEQRVYAIDSDRKTEFVSH 238
Score = 147 (56.8 bits), Expect = 3.4e-43, Sum P(2) = 3.4e-43
Identities = 32/100 (32%), Positives = 57/100 (57%)
Query: 353 ELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYD 412
+L +L + ++F HG++ Q R FK +L++TDVAARGLD +++ +I ++
Sbjct: 264 QLNKLGVATQSF--HGDLSQGAREKVLQEFKQGLVQVLVATDVAARGLDIAELQYVINFE 321
Query: 413 SAGEATEYVHRVGRTARLGERGDSLLFLQPVEMDYLQDLE 452
A +Y+HR+GRT R G G ++ + L+++E
Sbjct: 322 LPFIAEDYIHRIGRTGRAGSAGLAITLFSQEDALLLEEVE 361
>UNIPROTKB|Q9KNA4 [details] [associations]
symbol:VC_A0061 "ATP-dependent RNA helicase, DEAD box
family" species:243277 "Vibrio cholerae O1 biovar El Tor str.
N16961" [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS] [GO:0016070 "RNA metabolic process" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:AE003853
GenomeReviews:AE003853_GR GO:GO:0016070 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 InterPro:IPR014014
PROSITE:PS51195 HSSP:P10081 OMA:PKFIVAT ProtClustDB:CLSK869483
PIR:C82506 RefSeq:NP_232462.1 ProteinModelPortal:Q9KNA4
DNASU:2612119 GeneID:2612119 KEGG:vch:VCA0061 PATRIC:20084709
Uniprot:Q9KNA4
Length = 452
Score = 311 (114.5 bits), Expect = 4.1e-43, Sum P(2) = 4.1e-43
Identities = 70/178 (39%), Positives = 105/178 (58%)
Query: 16 ASCSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLA 75
++ F LGL + L L F+ T++Q QAIP+ ++GR +L ++ TG+GKT+A++
Sbjct: 3 STLQFKDLGLDNRLLKNLAH-YNFKQATEIQQQAIPLTIAGRDLLASSKTGSGKTLAFVL 61
Query: 76 PIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRS 135
P+++ +S + + L+LVPTREL QVY L +L + + GGEN +
Sbjct: 62 PMLH--KSLKTKAFSAKDPRGLILVPTRELAKQVYGELRSMLGGLSYTAT-LITGGENFN 118
Query: 136 KEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEI 193
+ L +G +VATPGRL DHL H S FL L ++ DEADR+L+LGF KE+ I
Sbjct: 119 DQVKALARGPRFIVATPGRLADHLDHRSLFLE-GLETLVLDEADRMLDLGFAKELRRI 175
Score = 223 (83.6 bits), Expect = 9.0e-32, Sum P(2) = 9.0e-32
Identities = 62/163 (38%), Positives = 85/163 (52%)
Query: 97 LVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLL 156
L+LVPTREL QVY L +L + + GGEN + + L +G +VATPGRL
Sbjct: 81 LILVPTRELAKQVYGELRSMLGGLSYTAT-LITGGENFNDQVKALARGPRFIVATPGRLA 139
Query: 157 DHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKR 216
DHL H S FL L ++ DEADR+L+LGF KE+ I N + +R
Sbjct: 140 DHLDHRSLFLE-GLETLVLDEADRMLDLGFAKELRRI--------------HNAAKHRRR 184
Query: 217 QNLLLSATLNEK-VNHLAKISLETP--VLIGLDEKKLPEDKSH 256
Q L+ SATL+ VN +A L P + IG+ ++ + H
Sbjct: 185 QTLMFSATLDHADVNDMAMELLNEPKRIAIGVGSEEHKDITQH 227
Score = 197 (74.4 bits), Expect = 4.1e-43, Sum P(2) = 4.1e-43
Identities = 44/120 (36%), Positives = 64/120 (53%)
Query: 362 KTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYV 421
K L GN+ Q R T G F+ +L++TDVA+RGLD P V +I +D EYV
Sbjct: 276 KAVALSGNLNQTQRNTIMGQFERAVFKILVTTDVASRGLDIPAVTHVINFDMPKHTEEYV 335
Query: 422 HRVGRTARLGERGDSLLFLQPVEMDYLQDLEKHGVSLTEYPLLKVLDSFPLYGQKPRVKK 481
HRVGRT R G +GD++ + P + + + +E ++ +L L+ G KPR K
Sbjct: 336 HRVGRTGRAGNKGDAMSLVGPKDWESFKRVEAFLQQEIQFEVLAGLEG-KFKGLKPRQAK 394
>TIGR_CMR|VC_A0061 [details] [associations]
symbol:VC_A0061 "ATP-dependent RNA helicase, DEAD box
family" species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE003853 GenomeReviews:AE003853_GR GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 OMA:PKFIVAT
ProtClustDB:CLSK869483 PIR:C82506 RefSeq:NP_232462.1
ProteinModelPortal:Q9KNA4 DNASU:2612119 GeneID:2612119
KEGG:vch:VCA0061 PATRIC:20084709 Uniprot:Q9KNA4
Length = 452
Score = 311 (114.5 bits), Expect = 4.1e-43, Sum P(2) = 4.1e-43
Identities = 70/178 (39%), Positives = 105/178 (58%)
Query: 16 ASCSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLA 75
++ F LGL + L L F+ T++Q QAIP+ ++GR +L ++ TG+GKT+A++
Sbjct: 3 STLQFKDLGLDNRLLKNLAH-YNFKQATEIQQQAIPLTIAGRDLLASSKTGSGKTLAFVL 61
Query: 76 PIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRS 135
P+++ +S + + L+LVPTREL QVY L +L + + GGEN +
Sbjct: 62 PMLH--KSLKTKAFSAKDPRGLILVPTRELAKQVYGELRSMLGGLSYTAT-LITGGENFN 118
Query: 136 KEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEI 193
+ L +G +VATPGRL DHL H S FL L ++ DEADR+L+LGF KE+ I
Sbjct: 119 DQVKALARGPRFIVATPGRLADHLDHRSLFLE-GLETLVLDEADRMLDLGFAKELRRI 175
Score = 223 (83.6 bits), Expect = 9.0e-32, Sum P(2) = 9.0e-32
Identities = 62/163 (38%), Positives = 85/163 (52%)
Query: 97 LVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLL 156
L+LVPTREL QVY L +L + + GGEN + + L +G +VATPGRL
Sbjct: 81 LILVPTRELAKQVYGELRSMLGGLSYTAT-LITGGENFNDQVKALARGPRFIVATPGRLA 139
Query: 157 DHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKR 216
DHL H S FL L ++ DEADR+L+LGF KE+ I N + +R
Sbjct: 140 DHLDHRSLFLE-GLETLVLDEADRMLDLGFAKELRRI--------------HNAAKHRRR 184
Query: 217 QNLLLSATLNEK-VNHLAKISLETP--VLIGLDEKKLPEDKSH 256
Q L+ SATL+ VN +A L P + IG+ ++ + H
Sbjct: 185 QTLMFSATLDHADVNDMAMELLNEPKRIAIGVGSEEHKDITQH 227
Score = 197 (74.4 bits), Expect = 4.1e-43, Sum P(2) = 4.1e-43
Identities = 44/120 (36%), Positives = 64/120 (53%)
Query: 362 KTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYV 421
K L GN+ Q R T G F+ +L++TDVA+RGLD P V +I +D EYV
Sbjct: 276 KAVALSGNLNQTQRNTIMGQFERAVFKILVTTDVASRGLDIPAVTHVINFDMPKHTEEYV 335
Query: 422 HRVGRTARLGERGDSLLFLQPVEMDYLQDLEKHGVSLTEYPLLKVLDSFPLYGQKPRVKK 481
HRVGRT R G +GD++ + P + + + +E ++ +L L+ G KPR K
Sbjct: 336 HRVGRTGRAGNKGDAMSLVGPKDWESFKRVEAFLQQEIQFEVLAGLEG-KFKGLKPRQAK 394
>UNIPROTKB|F1P0I3 [details] [associations]
symbol:DDX10 "Probable ATP-dependent RNA helicase DDX10"
species:9031 "Gallus gallus" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313
Pfam:PF13959 GeneTree:ENSGT00550000074980 IPI:IPI00595697
OMA:ADKVIEP EMBL:AADN02005060 Ensembl:ENSGALT00000027709
Uniprot:F1P0I3
Length = 875
Score = 311 (114.5 bits), Expect = 5.6e-43, Sum P(2) = 5.6e-43
Identities = 80/229 (34%), Positives = 125/229 (54%)
Query: 20 FSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIIN 79
FS L L+E + T++Q Q I + L G+ VL A TG+GKT+A++ P +
Sbjct: 75 FSDFPLSKKTLKGLQEAQ-YRMVTEIQRQTIGLALQGKDVLGAAKTGSGKTLAFIVPALE 133
Query: 80 HLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKA 139
L Y + + G L++ PTREL Q +++L K+ + H G ++GG++ +E
Sbjct: 134 LL--YRLQWTSADGLGVLIISPTRELAFQTFKVLRKV-GKNHDFSAGLIIGGKDLKEESE 190
Query: 140 RLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILGS 199
R+ I++L+ TPGRLL H+ TS F ++L+ +I DEADRIL++GF + I++ L
Sbjct: 191 RIHH-INMLICTPGRLLQHMDETSYFYASDLQMLILDEADRILDMGFADTMNAIIENLPK 249
Query: 200 RNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEK 248
KRQ LL SAT + V LA++SL+ P + + EK
Sbjct: 250 ---------------KRQTLLFSATQTKSVKDLARLSLKDPEYVWVHEK 283
Score = 218 (81.8 bits), Expect = 5.6e-43, Sum P(2) = 5.6e-43
Identities = 52/155 (33%), Positives = 83/155 (53%)
Query: 307 LSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRL 366
+++L + + +K +VFF++C V + + + + Q P + + L
Sbjct: 305 INVLYSFLRSHLKKKSIVFFASCKEVQYLFRVFCKLQ------PGLPV---------LAL 349
Query: 367 HGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRVGR 426
HG +Q R + F +K A+L +TD+AARGLDFP V +IQ+D +A Y+HRVGR
Sbjct: 350 HGKQQQMKRMEVYTCFVRKKAAVLFATDIAARGLDFPAVNWVIQFDCPEDANTYIHRVGR 409
Query: 427 TARLGERGDSLLFLQPVE-MDYLQDLEKHGVSLTE 460
TAR E G++LL L P E ++ L + V + E
Sbjct: 410 TARYKEGGEALLVLLPSEEKGMVEQLAQRKVPVNE 444
>UNIPROTKB|Q5ZJF6 [details] [associations]
symbol:DDX10 "Probable ATP-dependent RNA helicase DDX10"
species:9031 "Gallus gallus" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K14776 InterPro:IPR025313 Pfam:PF13959 HOGENOM:HOG000268801
EMBL:AJ720478 IPI:IPI00595697 RefSeq:NP_001073193.1
UniGene:Gga.15096 HSSP:P26196 ProteinModelPortal:Q5ZJF6 SMR:Q5ZJF6
STRING:Q5ZJF6 GeneID:418965 KEGG:gga:418965 CTD:1662
HOVERGEN:HBG102756 InParanoid:Q5ZJF6 OrthoDB:EOG4BK536
NextBio:20822084 Uniprot:Q5ZJF6
Length = 875
Score = 311 (114.5 bits), Expect = 5.6e-43, Sum P(2) = 5.6e-43
Identities = 80/229 (34%), Positives = 125/229 (54%)
Query: 20 FSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIIN 79
FS L L+E + T++Q Q I + L G+ VL A TG+GKT+A++ P +
Sbjct: 75 FSDFPLSKKTLKGLQEAQ-YRMVTEIQRQTIGLALQGKDVLGAAKTGSGKTLAFIVPALE 133
Query: 80 HLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKA 139
L Y + + G L++ PTREL Q +++L K+ + H G ++GG++ +E
Sbjct: 134 LL--YRLQWTSADGLGVLIISPTRELAFQTFKVLRKV-GKNHDFSAGLIIGGKDLKEESE 190
Query: 140 RLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILGS 199
R+ I++L+ TPGRLL H+ TS F ++L+ +I DEADRIL++GF + I++ L
Sbjct: 191 RIHH-INMLICTPGRLLQHMDETSYFYASDLQMLILDEADRILDMGFADTMNAIIENLPK 249
Query: 200 RNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEK 248
KRQ LL SAT + V LA++SL+ P + + EK
Sbjct: 250 ---------------KRQTLLFSATQTKSVKDLARLSLKDPEYVWVHEK 283
Score = 218 (81.8 bits), Expect = 5.6e-43, Sum P(2) = 5.6e-43
Identities = 52/155 (33%), Positives = 83/155 (53%)
Query: 307 LSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRL 366
+++L + + +K +VFF++C V + + + + Q P + + L
Sbjct: 305 INVLYSFLRSHLKKKSIVFFASCKEVQYLFRVFCKLQ------PGLPV---------LAL 349
Query: 367 HGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRVGR 426
HG +Q R + F +K A+L +TD+AARGLDFP V +IQ+D +A Y+HRVGR
Sbjct: 350 HGKQQQMKRMEVYTCFVRKKAAVLFATDIAARGLDFPAVNWVIQFDCPEDANTYIHRVGR 409
Query: 427 TARLGERGDSLLFLQPVE-MDYLQDLEKHGVSLTE 460
TAR E G++LL L P E ++ L + V + E
Sbjct: 410 TARYKEGGEALLVLLPSEEKGMVEQLAQRKVPVNE 444
>UNIPROTKB|Q3AFI3 [details] [associations]
symbol:CHY_0229 "ATP-dependent RNA helicase, DEAD box
family" species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268810 KO:K05592 RefSeq:YP_359101.1
ProteinModelPortal:Q3AFI3 STRING:Q3AFI3 GeneID:3727044
KEGG:chy:CHY_0229 PATRIC:21273641 OMA:YAAKGLH
BioCyc:CHYD246194:GJCN-230-MONOMER Uniprot:Q3AFI3
Length = 430
Score = 309 (113.8 bits), Expect = 6.8e-43, Sum P(2) = 6.8e-43
Identities = 72/181 (39%), Positives = 109/181 (60%)
Query: 20 FSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIIN 79
F LGL + L + + LGFE PT +Q +AIP+IL G +++ A TGTGKT AYL P++
Sbjct: 4 FKKLGLITPLLKAVND-LGFEMPTPIQKEAIPLILEGHNLVGQAPTGTGKTAAYLLPVLQ 62
Query: 80 HLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKA 139
RI R L++ PTREL LQV + + KL ++ + V GG+ ++
Sbjct: 63 -------RIQRGKKAQVLIVTPTRELALQVADEVAKL-GKYLKVRALAVYGGQAIERQIR 114
Query: 140 RLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILGS 199
LR+G+ ++V TPGR+LDH+ +F ++ +I DEAD +L++GF +IE IL+ L +
Sbjct: 115 GLRQGVEVIVGTPGRILDHIGR-KTFPAAEIKIVILDEADEMLDMGFIDDIEAILNTLTN 173
Query: 200 R 200
R
Sbjct: 174 R 174
Score = 189 (71.6 bits), Expect = 6.8e-43, Sum P(2) = 6.8e-43
Identities = 41/104 (39%), Positives = 59/104 (56%)
Query: 351 DMELKQLFLRCKTFR-LHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCII 409
D ++QL R + LHG+M Q +R T +FK K LL++TDVAARGLD P V +I
Sbjct: 253 DEVVEQLNFRGYAAKGLHGDMSQRERTQTIKSFKAGKTELLVATDVAARGLDIPDVSHVI 312
Query: 410 QYDSAGEATEYVHRVGRTARLGERGDSLLFLQPVEMDYLQDLEK 453
+D Y+HR+GRT R G G ++ + E L+ +E+
Sbjct: 313 NFDIPQNPESYIHRIGRTGRAGREGKAITLINYRERKLLKAIEE 356
Score = 149 (57.5 bits), Expect = 6.8e-23, Sum P(2) = 6.8e-23
Identities = 44/127 (34%), Positives = 69/127 (54%)
Query: 128 VMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFG 187
V GG+ ++ LR+G+ ++V TPGR+LDH+ +F ++ +I DEAD +L++GF
Sbjct: 103 VYGGQAIERQIRGLRQGVEVIVGTPGRILDHIGR-KTFPAAEIKIVILDEADEMLDMGFI 161
Query: 188 KEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISL---ETPVLIG 244
+IE IL+ L +R +Q LL SATL + + K L +T L+G
Sbjct: 162 DDIEAILNTLTNR---------------QQTLLFSATLPAPIKTIIKKFLGGYKTVKLVG 206
Query: 245 LDEKKLP 251
EK +P
Sbjct: 207 R-EKTVP 212
>TIGR_CMR|CHY_0229 [details] [associations]
symbol:CHY_0229 "ATP-dependent RNA helicase, DEAD box
family" species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268810 KO:K05592 RefSeq:YP_359101.1
ProteinModelPortal:Q3AFI3 STRING:Q3AFI3 GeneID:3727044
KEGG:chy:CHY_0229 PATRIC:21273641 OMA:YAAKGLH
BioCyc:CHYD246194:GJCN-230-MONOMER Uniprot:Q3AFI3
Length = 430
Score = 309 (113.8 bits), Expect = 6.8e-43, Sum P(2) = 6.8e-43
Identities = 72/181 (39%), Positives = 109/181 (60%)
Query: 20 FSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIIN 79
F LGL + L + + LGFE PT +Q +AIP+IL G +++ A TGTGKT AYL P++
Sbjct: 4 FKKLGLITPLLKAVND-LGFEMPTPIQKEAIPLILEGHNLVGQAPTGTGKTAAYLLPVLQ 62
Query: 80 HLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKA 139
RI R L++ PTREL LQV + + KL ++ + V GG+ ++
Sbjct: 63 -------RIQRGKKAQVLIVTPTRELALQVADEVAKL-GKYLKVRALAVYGGQAIERQIR 114
Query: 140 RLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILGS 199
LR+G+ ++V TPGR+LDH+ +F ++ +I DEAD +L++GF +IE IL+ L +
Sbjct: 115 GLRQGVEVIVGTPGRILDHIGR-KTFPAAEIKIVILDEADEMLDMGFIDDIEAILNTLTN 173
Query: 200 R 200
R
Sbjct: 174 R 174
Score = 189 (71.6 bits), Expect = 6.8e-43, Sum P(2) = 6.8e-43
Identities = 41/104 (39%), Positives = 59/104 (56%)
Query: 351 DMELKQLFLRCKTFR-LHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCII 409
D ++QL R + LHG+M Q +R T +FK K LL++TDVAARGLD P V +I
Sbjct: 253 DEVVEQLNFRGYAAKGLHGDMSQRERTQTIKSFKAGKTELLVATDVAARGLDIPDVSHVI 312
Query: 410 QYDSAGEATEYVHRVGRTARLGERGDSLLFLQPVEMDYLQDLEK 453
+D Y+HR+GRT R G G ++ + E L+ +E+
Sbjct: 313 NFDIPQNPESYIHRIGRTGRAGREGKAITLINYRERKLLKAIEE 356
Score = 149 (57.5 bits), Expect = 6.8e-23, Sum P(2) = 6.8e-23
Identities = 44/127 (34%), Positives = 69/127 (54%)
Query: 128 VMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFG 187
V GG+ ++ LR+G+ ++V TPGR+LDH+ +F ++ +I DEAD +L++GF
Sbjct: 103 VYGGQAIERQIRGLRQGVEVIVGTPGRILDHIGR-KTFPAAEIKIVILDEADEMLDMGFI 161
Query: 188 KEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISL---ETPVLIG 244
+IE IL+ L +R +Q LL SATL + + K L +T L+G
Sbjct: 162 DDIEAILNTLTNR---------------QQTLLFSATLPAPIKTIIKKFLGGYKTVKLVG 206
Query: 245 LDEKKLP 251
EK +P
Sbjct: 207 R-EKTVP 212
>UNIPROTKB|Q9KLH6 [details] [associations]
symbol:VC_A0768 "ATP-dependent RNA helicase, DEAD box
family" species:243277 "Vibrio cholerae O1 biovar El Tor str.
N16961" [GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
[GO:0008152 "metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE003853 GenomeReviews:AE003853_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 KO:K11927
OMA:LECVINY PIR:H82418 RefSeq:NP_233154.1 ProteinModelPortal:Q9KLH6
DNASU:2612338 GeneID:2612338 KEGG:vch:VCA0768 PATRIC:20086092
ProtClustDB:CLSK869757 Uniprot:Q9KLH6
Length = 422
Score = 316 (116.3 bits), Expect = 7.5e-43, Sum P(2) = 7.5e-43
Identities = 86/226 (38%), Positives = 118/226 (52%)
Query: 17 SCSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAP 76
S +FS LGL S L + L E LG PT +Q QAIP +L G+ VL A TGTGKT A+ P
Sbjct: 5 SITFSQLGLDSRLLNTLSE-LGIANPTPIQQQAIPHVLQGKDVLAGAQTGTGKTAAFGLP 63
Query: 77 IINH-LQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRS 135
+I ++ R S ALVLVPTREL QV + L + V GG +
Sbjct: 64 LIQRFIEQPWQREANSKEIRALVLVPTRELAQQVLDSLQAYAKGTELKIVA-VYGGTSMK 122
Query: 136 KEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILD 195
+ LR G+ IL+ATPGRLLDH H S + ++ DEADR+L++GF +++ +L
Sbjct: 123 VQLNHLRGGVDILIATPGRLLDHA-HVKSLFLGKVEVLVLDEADRMLDMGFMPDLQRVL- 180
Query: 196 ILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPV 241
R + + RQ L SAT + K+ +A + P+
Sbjct: 181 ----RRLSPL----------RQTLFFSATFDSKIKAVAYRIMRDPI 212
Score = 161 (61.7 bits), Expect = 7.5e-43, Sum P(2) = 7.5e-43
Identities = 34/92 (36%), Positives = 53/92 (57%)
Query: 362 KTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYV 421
K ++G+ Q R+ FK K L++TDVAARGLD +++ ++ YD +A +YV
Sbjct: 277 KAVSINGDKSQGARQKALDDFKAGKVRALIATDVAARGLDIAQLEQVVNYDMPFKAEDYV 336
Query: 422 HRVGRTARLGERGDSLLFLQPVEMDYLQDLEK 453
HR+GRT R G G ++ L E L+ +E+
Sbjct: 337 HRIGRTGRAGLAGLAVSLLSHDEQPQLEAIER 368
>TIGR_CMR|VC_A0768 [details] [associations]
symbol:VC_A0768 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE003853 GenomeReviews:AE003853_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 KO:K11927
OMA:LECVINY PIR:H82418 RefSeq:NP_233154.1 ProteinModelPortal:Q9KLH6
DNASU:2612338 GeneID:2612338 KEGG:vch:VCA0768 PATRIC:20086092
ProtClustDB:CLSK869757 Uniprot:Q9KLH6
Length = 422
Score = 316 (116.3 bits), Expect = 7.5e-43, Sum P(2) = 7.5e-43
Identities = 86/226 (38%), Positives = 118/226 (52%)
Query: 17 SCSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAP 76
S +FS LGL S L + L E LG PT +Q QAIP +L G+ VL A TGTGKT A+ P
Sbjct: 5 SITFSQLGLDSRLLNTLSE-LGIANPTPIQQQAIPHVLQGKDVLAGAQTGTGKTAAFGLP 63
Query: 77 IINH-LQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRS 135
+I ++ R S ALVLVPTREL QV + L + V GG +
Sbjct: 64 LIQRFIEQPWQREANSKEIRALVLVPTRELAQQVLDSLQAYAKGTELKIVA-VYGGTSMK 122
Query: 136 KEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILD 195
+ LR G+ IL+ATPGRLLDH H S + ++ DEADR+L++GF +++ +L
Sbjct: 123 VQLNHLRGGVDILIATPGRLLDHA-HVKSLFLGKVEVLVLDEADRMLDMGFMPDLQRVL- 180
Query: 196 ILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPV 241
R + + RQ L SAT + K+ +A + P+
Sbjct: 181 ----RRLSPL----------RQTLFFSATFDSKIKAVAYRIMRDPI 212
Score = 161 (61.7 bits), Expect = 7.5e-43, Sum P(2) = 7.5e-43
Identities = 34/92 (36%), Positives = 53/92 (57%)
Query: 362 KTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYV 421
K ++G+ Q R+ FK K L++TDVAARGLD +++ ++ YD +A +YV
Sbjct: 277 KAVSINGDKSQGARQKALDDFKAGKVRALIATDVAARGLDIAQLEQVVNYDMPFKAEDYV 336
Query: 422 HRVGRTARLGERGDSLLFLQPVEMDYLQDLEK 453
HR+GRT R G G ++ L E L+ +E+
Sbjct: 337 HRIGRTGRAGLAGLAVSLLSHDEQPQLEAIER 368
>TAIR|locus:2010306 [details] [associations]
symbol:EMB1586 "embryo defective 1586" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0009507 "chloroplast"
evidence=ISM] [GO:0009793 "embryo development ending in seed
dormancy" evidence=NAS] [GO:0009663 "plasmodesma organization"
evidence=IMP] [GO:0003724 "RNA helicase activity" evidence=ISS]
[GO:0005739 "mitochondrion" evidence=IDA] [GO:0010497
"plasmodesmata-mediated intercellular transport" evidence=IMP]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005739 GO:GO:0005524 GO:GO:0003723
EMBL:AC012187 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GO:GO:0010497 EMBL:AC025417 EMBL:AY062618 EMBL:AY114691
EMBL:AK175587 EMBL:AK175711 EMBL:AK175751 EMBL:AK175793
EMBL:AK176044 EMBL:AK176194 EMBL:AK226229 EMBL:AK229878
EMBL:AK230085 IPI:IPI00521991 PIR:H86260 RefSeq:NP_172737.2
UniGene:At.47876 ProteinModelPortal:Q8W4E1 SMR:Q8W4E1 PaxDb:Q8W4E1
PRIDE:Q8W4E1 EnsemblPlants:AT1G12770.1 GeneID:837833
KEGG:ath:AT1G12770 GeneFarm:1026 TAIR:At1g12770
HOGENOM:HOG000239285 InParanoid:Q8W4E1 OMA:IRVSNFV PhylomeDB:Q8W4E1
ProtClustDB:CLSN2681499 Genevestigator:Q8W4E1 GO:GO:0009663
Uniprot:Q8W4E1
Length = 551
Score = 363 (132.8 bits), Expect = 1.3e-42, Sum P(2) = 1.3e-42
Identities = 95/264 (35%), Positives = 150/264 (56%)
Query: 1 MIKMSKKKETVKEIFASCSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVL 60
++K K E V +F++ SF LGL +L D L ER GF PT VQ+ A+P I+ G +
Sbjct: 93 VVKEKKPAEIVSPLFSAKSFEELGLPDSLLDSL-EREGFSVPTDVQSAAVPAIIKGHDAV 151
Query: 61 VNAATGTGKTVAYLAPIINHL--------QSYSPRIDRSSGTFALVLVPTRELCLQVYEI 112
+ + TG+GKT+AYL PI++ + S+S D+ + A+++ P+REL +Q+
Sbjct: 152 IQSYTGSGKTLAYLLPILSEIGPLAEKSRSSHSEN-DKRTEIQAMIVAPSRELGMQIVRE 210
Query: 113 LHKLLHRFHWIVPGYVMGGENRSKEKARLRKGI-SILVATPGRLLDHLKHTSSFLHTN-L 170
+ KLL H + ++GG NR +++ L+K +I+V TPGR+ + K LHT+
Sbjct: 211 VEKLLGPVHRRMVQQLVGGANRMRQEEALKKNKPAIVVGTPGRIAEISK--GGKLHTHGC 268
Query: 171 RWIIFDEADRILELGFGKEIEEILDILGSRN-IGSIGEGNEVSNVKRQNLLLSATLNEKV 229
R+++ DE D +L F ++I IL+ +G R+ G GE +E +N RQ +L+SAT+ V
Sbjct: 269 RFLVLDEVDELLSFNFREDIHRILEHVGKRSGAGPKGEVDERAN--RQTILVSATVPFSV 326
Query: 230 NHLAKISLETPVLIGLDEKKLPED 253
AK PVL+ + K P D
Sbjct: 327 IRAAKSWSHEPVLVQAN-KVTPLD 349
Score = 133 (51.9 bits), Expect = 1.3e-42, Sum P(2) = 1.3e-42
Identities = 37/145 (25%), Positives = 68/145 (46%)
Query: 310 LKHLFDTEVSQKLVVFFSTC-DAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHG 368
LKH + Q V C A+D S+++ F D+ K + +HG
Sbjct: 382 LKHYYCISKHQHKVDTLRRCVHALDAQ-SVIA-FMNHSRQLKDVVYKLEARGMNSAEMHG 439
Query: 369 NMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRVGRTA 428
++ + R T FK + +L++ +++ARGLD + ++ + +A Y HR GRT
Sbjct: 440 DLGKLGRSTVLKKFKNGEIKVLVTNELSARGLDVAECDLVVNLELPTDAVHYAHRAGRTG 499
Query: 429 RLGERGDSLLFLQPVEMDYLQDLEK 453
RLG +G + + ++ ++ +EK
Sbjct: 500 RLGRKGTVVTVCEESQVFIVKKMEK 524
>FB|FBgn0032919 [details] [associations]
symbol:CG9253 species:7227 "Drosophila melanogaster"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081
EMBL:AY121677 ProteinModelPortal:Q8MRB7 SMR:Q8MRB7 STRING:Q8MRB7
PaxDb:Q8MRB7 PRIDE:Q8MRB7 FlyBase:FBgn0032919 InParanoid:Q8MRB7
OrthoDB:EOG4V41Q7 ArrayExpress:Q8MRB7 Bgee:Q8MRB7 Uniprot:Q8MRB7
Length = 507
Score = 313 (115.2 bits), Expect = 1.7e-42, Sum P(2) = 1.7e-42
Identities = 83/230 (36%), Positives = 128/230 (55%)
Query: 19 SFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPII 78
++ LGL+ LC Q + L ++AP+K+Q +AIPV L G+ V+ A TG+GKT A+ PI+
Sbjct: 62 TWKDLGLNEALC-QACDELKWKAPSKIQREAIPVALQGKDVIGLAETGSGKTGAFALPIL 120
Query: 79 NHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEK 138
+ L ++ FALVL PTREL Q+ E L I V+GG + +
Sbjct: 121 HAL------LENPQRYFALVLTPTRELAFQIGEQFEALGSGIG-IKCCVVVGGMDMVAQG 173
Query: 139 ARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILG 198
+L K I++ATPGRL+DHL++ F +++++ DEADRIL + F E+++IL +L
Sbjct: 174 LQLAKKPHIIIATPGRLVDHLENMKGFNLKAIKYLVMDEADRILNMDFEVELDKILKVLP 233
Query: 199 SRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEK 248
+R+ L SAT+ +KV L + SL+ PV + + K
Sbjct: 234 R---------------ERRTFLFSATMTKKVKKLQRASLKDPVKVEVSNK 268
Score = 197 (74.4 bits), Expect = 1.7e-42, Sum P(2) = 1.7e-42
Identities = 39/98 (39%), Positives = 58/98 (59%)
Query: 366 LHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRVG 425
LHG M Q R FK + +++L+STDVA+RGLD P V ++ +D + +Y+HRVG
Sbjct: 330 LHGQMSQNKRLAALNKFKAKNRSILISTDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVG 389
Query: 426 RTARLGERGDSLLFLQPVEMDYLQDLEKH--GVSLTEY 461
RTAR G G ++ + +++ Q +E H G LT Y
Sbjct: 390 RTARAGRSGKAITLVSQYDIELYQRIE-HLLGKQLTLY 426
Score = 52 (23.4 bits), Expect = 2.2e-13, Sum P(2) = 2.2e-13
Identities = 25/128 (19%), Positives = 55/128 (42%)
Query: 209 NEVSNVKRQNL-LLSATLNEKVNHLAKISLETPVLIGLDE--KKLPEDKSHVRFGSLESD 265
+ + N+K NL + + ++ + + + E + LD+ K LP ++ F + +
Sbjct: 192 DHLENMKGFNLKAIKYLVMDEADRILNMDFE----VELDKILKVLPRERRTFLFSATMTK 247
Query: 266 VKEEVEHPST---TMRSTTEDFKLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKL 322
++++ S + ++ QL Q Y+ +P + L+ IL L
Sbjct: 248 KVKKLQRASLKDPVKVEVSNKYQTVEQLQQSYLFIPVKYKDVYLVHILNEL----AGNSF 303
Query: 323 VVFFSTCD 330
++F STC+
Sbjct: 304 MIFCSTCN 311
>SGD|S000003570 [details] [associations]
symbol:HCA4 "DEAD box RNA helicase" species:4932
"Saccharomyces cerevisiae" [GO:0005730 "nucleolus" evidence=IEA;IC]
[GO:0006364 "rRNA processing" evidence=IEA;IMP] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0008186 "RNA-dependent ATPase activity" evidence=IDA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0042254
"ribosome biogenesis" evidence=IEA] [GO:0004004 "ATP-dependent RNA
helicase activity" evidence=IDA;IMP] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 SGD:S000003570
GO:GO:0005524 GO:GO:0005730 EMBL:BK006943 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K14776 InterPro:IPR025313 Pfam:PF13959 HOGENOM:HOG000268801
OMA:MFERKNQ OrthoDB:EOG4R53B0 EMBL:U72149 EMBL:Z49308 EMBL:AY693118
PIR:S56805 RefSeq:NP_012501.1 ProteinModelPortal:P20448 SMR:P20448
DIP:DIP-6819N IntAct:P20448 MINT:MINT-620511 STRING:P20448
PaxDb:P20448 PeptideAtlas:P20448 EnsemblFungi:YJL033W GeneID:853419
KEGG:sce:YJL033W CYGD:YJL033w GeneTree:ENSGT00550000074980
NextBio:973942 Genevestigator:P20448 GermOnline:YJL033W
Uniprot:P20448
Length = 770
Score = 316 (116.3 bits), Expect = 1.9e-42, Sum P(2) = 1.9e-42
Identities = 83/225 (36%), Positives = 121/225 (53%)
Query: 20 FSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIIN 79
F L + LRE F T++QA +IPV L G VL A TG+GKT+A+L P+I
Sbjct: 43 FKDLPISDPTLKGLRES-SFIKLTEIQADSIPVSLQGHDVLAAAKTGSGKTLAFLVPVIE 101
Query: 80 HLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKA 139
L Y + G AL++ PTREL +Q+YE+L K+ + G V+GG++ E
Sbjct: 102 KL--YREKWTEFDGLGALIISPTRELAMQIYEVLTKIGSHTSFSA-GLVIGGKDVKFELE 158
Query: 140 RLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILGS 199
R+ + I+IL+ TPGR+L HL +NL+ ++ DEADR L++GF K ++ I+ L
Sbjct: 159 RISR-INILIGTPGRILQHLDQAVGLNTSNLQMLVLDEADRCLDMGFKKTLDAIVSTLSP 217
Query: 200 RNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIG 244
RQ LL SAT ++ V LA++SL +G
Sbjct: 218 ---------------SRQTLLFSATQSQSVADLARLSLTDYKTVG 247
Score = 205 (77.2 bits), Expect = 1.9e-42, Sum P(2) = 1.9e-42
Identities = 53/150 (35%), Positives = 74/150 (49%)
Query: 303 LAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCK 362
LA L IL + + K++VF S+ V F Y + Q P + L
Sbjct: 275 LADKLDILFSFIKSHLKCKMIVFLSSSKQVHFVYETFRKMQ------PGISL-------- 320
Query: 363 TFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVH 422
LHG KQ R T F ++ L +TDV ARG+DFP V ++Q D + Y+H
Sbjct: 321 -MHLHGRQKQRARTETLDKFNRAQQVCLFATDVVARGIDFPAVDWVVQVDCPEDVDTYIH 379
Query: 423 RVGRTARLGERGDSLLFLQPVEMD-YLQDL 451
RVGR AR G++G SL+ L P E + +L+ L
Sbjct: 380 RVGRCARYGKKGKSLIMLTPQEQEAFLKRL 409
Score = 79 (32.9 bits), Expect = 3.1e-29, Sum P(2) = 3.1e-29
Identities = 19/65 (29%), Positives = 32/65 (49%)
Query: 279 STTEDFKLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSL 338
S ++ P L Q Y++VP +L +L S +K + + K++VF S+ V F Y
Sbjct: 255 SVNKEASTPETLQQFYIEVPLADKLDILFSFIK----SHLKCKMIVFLSSSKQVHFVYET 310
Query: 339 LSEFQ 343
+ Q
Sbjct: 311 FRKMQ 315
>MGI|MGI:2385884 [details] [associations]
symbol:Ddx27 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 27"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0005634 "nucleus" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 MGI:MGI:2385884 GO:GO:0005524
GO:GO:0005634 EMBL:CH466551 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 CTD:55661
GeneTree:ENSGT00550000074997 HOGENOM:HOG000265456
HOVERGEN:HBG106162 KO:K13181 OMA:TRTFTDH OrthoDB:EOG4NVZJV
EMBL:AK134274 EMBL:AK138442 EMBL:AL591711 EMBL:BC011321
EMBL:BC024730 EMBL:BC026381 IPI:IPI00122038 IPI:IPI00230236
RefSeq:NP_694705.2 UniGene:Mm.295031 ProteinModelPortal:Q921N6
SMR:Q921N6 PhosphoSite:Q921N6 PaxDb:Q921N6 PRIDE:Q921N6
Ensembl:ENSMUST00000018143 Ensembl:ENSMUST00000150571 GeneID:228889
KEGG:mmu:228889 UCSC:uc008nza.1 InParanoid:Q3UUG2 NextBio:379240
Bgee:Q921N6 CleanEx:MM_DDX27 Genevestigator:Q921N6
GermOnline:ENSMUSG00000017999 Uniprot:Q921N6
Length = 760
Score = 339 (124.4 bits), Expect = 2.5e-42, Sum P(2) = 2.5e-42
Identities = 89/235 (37%), Positives = 131/235 (55%)
Query: 9 ETVKEIFASCSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTG 68
E E S SF + L L + +GF+ PT +Q IPV L G+ + AATGTG
Sbjct: 175 EDASEYDKSLSFQDMNLSRPLLKAITA-MGFKQPTPIQKACIPVGLLGKDICACAATGTG 233
Query: 69 KTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYV 128
KT A+ P++ L Y PR +++ T LVLVPTREL +QV+ + K L +F I
Sbjct: 234 KTAAFALPVLERL-IYKPR--QAAVTRVLVLVPTRELGIQVHSVT-KQLAQFCSITTCLA 289
Query: 129 MGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGK 188
+GG + ++A LR IL+ATPGRL+DHL + SF +++ +I DEADR+L+ F +
Sbjct: 290 VGGLDVKSQEAALRAAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEE 349
Query: 189 EIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLI 243
+++EI+ + RQ +L SAT+ ++V LA +SL+ PV I
Sbjct: 350 QMKEIIRMCSHH---------------RQTMLFSATMTDEVKDLASVSLKNPVRI 389
Score = 176 (67.0 bits), Expect = 2.5e-42, Sum P(2) = 2.5e-42
Identities = 38/88 (43%), Positives = 50/88 (56%)
Query: 366 LHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRVG 425
LHGN+ Q R FK E+ +L++TDVAARGLD VK +I + YVHRVG
Sbjct: 459 LHGNLSQTQRLEALRRFKDEQIDILVATDVAARGLDIEGVKTVINFTMPNTVKHYVHRVG 518
Query: 426 RTARLGERGDSLLFLQPVEMDYLQDLEK 453
RTAR G G S+ + E L+++ K
Sbjct: 519 RTARAGRAGRSVSLVGEEERKMLKEIVK 546
>UNIPROTKB|E1C187 [details] [associations]
symbol:DDX27 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00550000074997 OMA:TRTFTDH EMBL:AADN02019007
IPI:IPI00822640 Ensembl:ENSGALT00000011297 ArrayExpress:E1C187
Uniprot:E1C187
Length = 759
Score = 338 (124.0 bits), Expect = 3.3e-42, Sum P(2) = 3.3e-42
Identities = 91/236 (38%), Positives = 134/236 (56%)
Query: 9 ETVKEIFASCSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGT- 67
E E + SF + L L + LGF+ PT +Q IPV L G+ + AATGT
Sbjct: 171 EDASEYDDNLSFQDMNLSRPLLKAITA-LGFKQPTPIQKACIPVGLLGKDICACAATGTV 229
Query: 68 GKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGY 127
GKT A++ P++ L Y PR ++ T LVLVPTREL +QV+ + K L +F +
Sbjct: 230 GKTAAFILPVLERL-IYKPR--QAPITRVLVLVPTRELGIQVHSVT-KQLAQFSSVTTCL 285
Query: 128 VMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFG 187
+GG + ++A LR G IL+ATPGRL+DHL + SF +++ +I DEADR+L+ F
Sbjct: 286 AVGGLDVKTQEAALRSGPDILIATPGRLIDHLHNCPSFHLSSVEVLILDEADRMLDEYFE 345
Query: 188 KEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLI 243
++++EI+ + SR+ RQ +L SAT+ E+V LA +SL+ P I
Sbjct: 346 EQMKEIIRLC-SRH--------------RQTMLFSATMTEEVKDLASVSLKNPTRI 386
Score = 176 (67.0 bits), Expect = 3.3e-42, Sum P(2) = 3.3e-42
Identities = 38/88 (43%), Positives = 50/88 (56%)
Query: 366 LHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRVG 425
LHGN+ Q R FK E+ +L++TDVAARGLD VK +I + YVHRVG
Sbjct: 456 LHGNLSQAQRLEALRRFKDEQIDILVATDVAARGLDIEGVKTVINFTMPNTTKHYVHRVG 515
Query: 426 RTARLGERGDSLLFLQPVEMDYLQDLEK 453
RTAR G G S+ + E L+++ K
Sbjct: 516 RTARAGRAGRSVSLVGEEERKMLKEIVK 543
>TAIR|locus:2825324 [details] [associations]
symbol:AT1G71370 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005524
GO:GO:0003723 EMBL:AC016163 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
HOGENOM:HOG000268803 KO:K14809 EMBL:AK118294 IPI:IPI00527105
RefSeq:NP_177293.1 UniGene:At.70349 ProteinModelPortal:Q8GXD6
SMR:Q8GXD6 PRIDE:Q8GXD6 EnsemblPlants:AT1G71370.1 GeneID:843478
KEGG:ath:AT1G71370 GeneFarm:1028 TAIR:At1g71370 InParanoid:Q8GXD6
OMA:EYLKCEA PhylomeDB:Q8GXD6 ProtClustDB:CLSN2914591
Genevestigator:Q8GXD6 GermOnline:AT1G71370 Uniprot:Q8GXD6
Length = 558
Score = 271 (100.5 bits), Expect = 4.6e-42, Sum P(2) = 4.6e-42
Identities = 77/239 (32%), Positives = 120/239 (50%)
Query: 35 ERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAP---IINHLQSYSPRIDRS 91
+R GFE T VQA+ IP + S + V+V+AATG+GKT+A+L P II SY P+ +
Sbjct: 32 DRSGFEVCTPVQAETIPFLCSHKDVVVDAATGSGKTLAFLLPFIEIIRRSNSYPPKPHQV 91
Query: 92 SGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRK-GISILVA 150
G +++ PTREL Q++++ + + ++GG + L + G ++L+
Sbjct: 92 MG---VIISPTRELSAQIHKVAEPFVSTLPNVNSVLLVGGREVEADMNTLEEEGANLLIG 148
Query: 151 TPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILGSRNIGSIGEGNE 210
TPGRL D +K NL +I DEADR+L++GF K++ I+ L +
Sbjct: 149 TPGRLSDMMKRMEFLDFRNLEILILDEADRLLDMGFQKQVNYIISRLPKQ---------- 198
Query: 211 VSNVKRQNLLLSATLNEKVNHLAKISLETP--VLIGLDEKKLPEDKSHVRFGSLESDVK 267
R+ L SAT + V LAK L V+ G + K + + E+D K
Sbjct: 199 -----RRTGLFSATQTQAVADLAKAGLRNAMEVISGAESKSKTSSGLYCEYLKCEADQK 252
Score = 246 (91.7 bits), Expect = 4.6e-42, Sum P(2) = 4.6e-42
Identities = 60/153 (39%), Positives = 83/153 (54%)
Query: 308 SILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLH 367
S L HL ++KLVVFF TC VD+ +LS+ P LK + F H
Sbjct: 254 SQLVHLLIENKNKKLVVFFMTCACVDYWGLVLSKI-------PT--LKSISF----FSTH 300
Query: 368 GNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRVGRT 427
G M Q+ R T +F +LL TDVAARGLD P + ++QYD + ++HRVGRT
Sbjct: 301 GKMDQKGRDTALASFTEASSGVLLCTDVAARGLDIPGIDYVVQYDPPQDPDVFIHRVGRT 360
Query: 428 ARLGERGDSLLFLQPVEMDYLQDLEKHGVSLTE 460
AR+ +G +++FL P E DY++ + V L E
Sbjct: 361 ARMERQGRAIVFLMPKETDYVEFMRIRRVPLQE 393
>UNIPROTKB|Q8ECL2 [details] [associations]
symbol:SO_3125 "ATP-dependent RNA helicase DEAD box family"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
ProtClustDB:CLSK907013 RefSeq:NP_718686.1 ProteinModelPortal:Q8ECL2
GeneID:1170814 KEGG:son:SO_3125 PATRIC:23525896 OMA:AHLIKQH
Uniprot:Q8ECL2
Length = 427
Score = 317 (116.6 bits), Expect = 6.4e-42, Sum P(2) = 6.4e-42
Identities = 91/227 (40%), Positives = 125/227 (55%)
Query: 19 SFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPII 78
SF+ LG+ + L ++L E LG+ +PT VQA IP +LSGR VL A TG+GKT A+ P++
Sbjct: 10 SFAELGIIAPLGNRLTE-LGYVSPTPVQAATIPAVLSGRDVLAGANTGSGKTAAFALPLL 68
Query: 79 NHLQSYSPRIDRSSGTF-ALVLVPTRELCLQVYEILHKLLHRFHW---IVPGYVMGGENR 134
L S + D+S+G LVLVPTREL QV + F+ IV + GG +
Sbjct: 69 QRL-SEAKSADKSAGVVRCLVLVPTRELAQQVADSFLSYASHFNGQLKIVAAF--GGVSV 125
Query: 135 SKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEIL 194
+ + LR G +LVATPGRLLD L + L T + + DEADR+L LGF +E+E++L
Sbjct: 126 NLQMQSLRAGADVLVATPGRLLDLLASNALKL-TQVSAFVLDEADRMLSLGFTEELEQVL 184
Query: 195 DILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPV 241
L + +Q LL SAT E+V L L P+
Sbjct: 185 AALPRQ---------------KQTLLFSATFPEEVRALTTKLLHQPL 216
Score = 151 (58.2 bits), Expect = 6.4e-42, Sum P(2) = 6.4e-42
Identities = 29/87 (33%), Positives = 49/87 (56%)
Query: 367 HGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRVGR 426
HG+ Q R FK + ++L++TD+AARG+D K+ +I +D +Y+HR+GR
Sbjct: 284 HGDKAQGARTRVLDGFKNGEISVLIATDIAARGIDIDKLPVVINFDLPRSPADYMHRIGR 343
Query: 427 TARLGERGDSLLFLQPVEMDYLQDLEK 453
+ R GE G ++ + E + +EK
Sbjct: 344 SGRAGEAGLAVTLISHEEYHHFGVIEK 370
Score = 37 (18.1 bits), Expect = 5.8e-30, Sum P(2) = 5.8e-30
Identities = 9/21 (42%), Positives = 11/21 (52%)
Query: 240 PVLIGLDEKKLPEDKSHVRFG 260
PV+I D + P D H R G
Sbjct: 323 PVVINFDLPRSPADYMH-RIG 342
>TIGR_CMR|SO_3125 [details] [associations]
symbol:SO_3125 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
ProtClustDB:CLSK907013 RefSeq:NP_718686.1 ProteinModelPortal:Q8ECL2
GeneID:1170814 KEGG:son:SO_3125 PATRIC:23525896 OMA:AHLIKQH
Uniprot:Q8ECL2
Length = 427
Score = 317 (116.6 bits), Expect = 6.4e-42, Sum P(2) = 6.4e-42
Identities = 91/227 (40%), Positives = 125/227 (55%)
Query: 19 SFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPII 78
SF+ LG+ + L ++L E LG+ +PT VQA IP +LSGR VL A TG+GKT A+ P++
Sbjct: 10 SFAELGIIAPLGNRLTE-LGYVSPTPVQAATIPAVLSGRDVLAGANTGSGKTAAFALPLL 68
Query: 79 NHLQSYSPRIDRSSGTF-ALVLVPTRELCLQVYEILHKLLHRFHW---IVPGYVMGGENR 134
L S + D+S+G LVLVPTREL QV + F+ IV + GG +
Sbjct: 69 QRL-SEAKSADKSAGVVRCLVLVPTRELAQQVADSFLSYASHFNGQLKIVAAF--GGVSV 125
Query: 135 SKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEIL 194
+ + LR G +LVATPGRLLD L + L T + + DEADR+L LGF +E+E++L
Sbjct: 126 NLQMQSLRAGADVLVATPGRLLDLLASNALKL-TQVSAFVLDEADRMLSLGFTEELEQVL 184
Query: 195 DILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPV 241
L + +Q LL SAT E+V L L P+
Sbjct: 185 AALPRQ---------------KQTLLFSATFPEEVRALTTKLLHQPL 216
Score = 151 (58.2 bits), Expect = 6.4e-42, Sum P(2) = 6.4e-42
Identities = 29/87 (33%), Positives = 49/87 (56%)
Query: 367 HGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRVGR 426
HG+ Q R FK + ++L++TD+AARG+D K+ +I +D +Y+HR+GR
Sbjct: 284 HGDKAQGARTRVLDGFKNGEISVLIATDIAARGIDIDKLPVVINFDLPRSPADYMHRIGR 343
Query: 427 TARLGERGDSLLFLQPVEMDYLQDLEK 453
+ R GE G ++ + E + +EK
Sbjct: 344 SGRAGEAGLAVTLISHEEYHHFGVIEK 370
Score = 37 (18.1 bits), Expect = 5.8e-30, Sum P(2) = 5.8e-30
Identities = 9/21 (42%), Positives = 11/21 (52%)
Query: 240 PVLIGLDEKKLPEDKSHVRFG 260
PV+I D + P D H R G
Sbjct: 323 PVVINFDLPRSPADYMH-RIG 342
>TIGR_CMR|CPS_1125 [details] [associations]
symbol:CPS_1125 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 KO:K11927 RefSeq:YP_267868.1
ProteinModelPortal:Q486Z7 STRING:Q486Z7 GeneID:3520292
KEGG:cps:CPS_1125 PATRIC:21465509 OMA:AYSKYLR
BioCyc:CPSY167879:GI48-1206-MONOMER Uniprot:Q486Z7
Length = 466
Score = 324 (119.1 bits), Expect = 7.5e-42, Sum P(2) = 7.5e-42
Identities = 75/181 (41%), Positives = 111/181 (61%)
Query: 20 FSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIIN 79
F+ LGL L +R++ G+E P+ +QAQAIP ++SGR V+ A TGTGKT + P++
Sbjct: 8 FTDLGLSEALLKAVRDK-GYETPSPIQAQAIPAVISGRDVMAAAQTGTGKTAGFTLPLLQ 66
Query: 80 HLQSYSPRIDRSSGTFALVLVPTRELCLQV---YEILHKLLHRFHWIVPGYVMGGENRSK 136
L S S+ AL+L PTREL Q+ E+ K L+ H +V V GG +
Sbjct: 67 RLSSSKGNKVSSNNVRALILTPTRELAAQISESIEVYGKYLN-LHSMV---VFGGVKINP 122
Query: 137 EKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDI 196
+ ARLR+G+ +LVATPGRLLD L + + + L I DEADR+L++GF ++I++++
Sbjct: 123 QIARLRQGVDVLVATPGRLLD-LYNQRAVKFSQLEVFILDEADRMLDMGFIRDIKKLMTA 181
Query: 197 L 197
L
Sbjct: 182 L 182
Score = 171 (65.3 bits), Expect = 9.1e-23, Sum P(2) = 9.1e-23
Identities = 46/127 (36%), Positives = 71/127 (55%)
Query: 128 VMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFG 187
V GG + + ARLR+G+ +LVATPGRLLD L + + + L I DEADR+L++GF
Sbjct: 114 VFGGVKINPQIARLRQGVDVLVATPGRLLD-LYNQRAVKFSQLEVFILDEADRMLDMGFI 172
Query: 188 KEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDE 247
++I++++ L RQNLL SAT + ++ LAK + P+ I +D
Sbjct: 173 RDIKKLMTALPK---------------DRQNLLFSATFSPEIRALAKGMVNNPLEISVDA 217
Query: 248 KKLPEDK 254
+ +K
Sbjct: 218 ENSTAEK 224
Score = 169 (64.5 bits), Expect = 7.5e-42, Sum P(2) = 7.5e-42
Identities = 37/105 (35%), Positives = 58/105 (55%)
Query: 366 LHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRVG 425
+HGN Q R AFK +L++TD+AARG+D + ++ +D +YVHR+G
Sbjct: 280 IHGNKSQGARTKALAAFKDGSVKILVATDIAARGIDIDLLPQVVNFDLPNVPEDYVHRIG 339
Query: 426 RTARLGERGDSLLFLQPVEMDYLQDLEKHGVSLTEYPLLKVLDSF 470
RTAR G G +L + E+D L +E H + ++ KV++ F
Sbjct: 340 RTARAGNTGQALSLVCADELDLLWGIE-HVIQ--QHIERKVIEKF 381
>ZFIN|ZDB-GENE-071022-2 [details] [associations]
symbol:ddx10 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
10" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-071022-2 GO:GO:0005524 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
GeneTree:ENSGT00550000074980 EMBL:CR450711 IPI:IPI00898518
Ensembl:ENSDART00000125785 ArrayExpress:F1QMM9 Bgee:F1QMM9
Uniprot:F1QMM9
Length = 875
Score = 314 (115.6 bits), Expect = 9.1e-42, Sum P(2) = 9.1e-42
Identities = 85/241 (35%), Positives = 128/241 (53%)
Query: 8 KETVKEIFASCSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGT 67
KE VK F+ S L L Q R+ PT++Q Q I L GR VL A TG+
Sbjct: 67 KEAVK--FSDFPLSKKTLKGLLEAQYRQ------PTEIQRQTIGFALQGRDVLGAAKTGS 118
Query: 68 GKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGY 127
GKT+A+L P++ L Y + G AL++ PTREL Q +E+L K+ + H G
Sbjct: 119 GKTLAFLIPVLECL--YREQWTAMDGLGALIISPTRELAYQTFEVLRKV-GKNHEFSAGL 175
Query: 128 VMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFG 187
V+GG++ E ++ + +I++ TPGRLL H+ T++F ++L ++ DEADRIL++GF
Sbjct: 176 VIGGKDLKDESEKIHR-TNIIICTPGRLLQHMDETATFHASDLHMLVLDEADRILDMGFA 234
Query: 188 KEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDE 247
+ I++ L RQ LL SAT V LA++SL+ P + + E
Sbjct: 235 DTLNAIVENLPK---------------SRQTLLFSATQTRSVKDLARLSLKDPEYVWVHE 279
Query: 248 K 248
+
Sbjct: 280 Q 280
Score = 203 (76.5 bits), Expect = 9.1e-42, Sum P(2) = 9.1e-42
Identities = 54/182 (29%), Positives = 93/182 (51%)
Query: 307 LSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRL 366
+++L + + +K++VFF+ C V + + + + P + + L
Sbjct: 302 VNMLYSFLRSHLQKKIIVFFACCKEVQYLFRIFCRLR------PGISV---------LAL 346
Query: 367 HGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRVGR 426
HG +Q R + F + A+L +TD+AARGLDFP V ++Q+D +A Y+HRVGR
Sbjct: 347 HGKQQQMKRVEVYNDFVRKTSAVLFATDIAARGLDFPAVNWVLQFDCPEDANTYIHRVGR 406
Query: 427 TARLGERGDSLLFLQPVE-MDYLQDLEKHGVSLTEYPLLKV-LDSFPLYGQKPRVKKFLT 484
TAR E G++LL L P E + L++ V P+ K+ ++ L + +++ FL
Sbjct: 407 TARYKEGGEALLVLLPSEEKGMISQLQEKKV-----PINKIQVNPEKLMSVQQKLEAFLA 461
Query: 485 TE 486
E
Sbjct: 462 QE 463
Score = 45 (20.9 bits), Expect = 3.3e-25, Sum P(2) = 3.3e-25
Identities = 14/54 (25%), Positives = 22/54 (40%)
Query: 246 DEKKLPE-DKSHVRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVP 298
D LP+ DK H S E ++ ++ + S+ F Q Q+ K P
Sbjct: 792 DPSTLPDPDKVHNSESSEEDGLQAKINNESSDAGGKKRSFSSEEQTTQKSRKKP 845
Score = 39 (18.8 bits), Expect = 1.4e-24, Sum P(2) = 1.4e-24
Identities = 13/36 (36%), Positives = 21/36 (58%)
Query: 236 SLETPVLIGLDEKKLPEDKSHVRFGSLESDVKEEVE 271
S E ++ L EKK+P +K V L S V++++E
Sbjct: 423 SEEKGMISQLQEKKVPINKIQVNPEKLMS-VQQKLE 457
>FB|FBgn0030855 [details] [associations]
symbol:CG5800 species:7227 "Drosophila melanogaster"
[GO:0003724 "RNA helicase activity" evidence=ISS] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0007526 "larval somatic muscle development"
evidence=IMP] [GO:0022008 "neurogenesis" evidence=IMP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0022008 EMBL:AE014298
GO:GO:0006200 GO:GO:0003723 GO:GO:0007526 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0016779
KO:K14776 InterPro:IPR025313 Pfam:PF13959
GeneTree:ENSGT00550000074980 OMA:ADKVIEP HSSP:P10081 EMBL:AY119628
RefSeq:NP_573230.1 UniGene:Dm.13464 SMR:Q9VX34 STRING:Q9VX34
EnsemblMetazoa:FBtr0074453 GeneID:32742 KEGG:dme:Dmel_CG5800
UCSC:CG5800-RA FlyBase:FBgn0030855 InParanoid:Q9VX34
OrthoDB:EOG4MCVFH GenomeRNAi:32742 NextBio:780142 Uniprot:Q9VX34
Length = 826
Score = 318 (117.0 bits), Expect = 1.3e-41, Sum P(2) = 1.3e-41
Identities = 75/206 (36%), Positives = 117/206 (56%)
Query: 39 FEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALV 98
F PT+VQ +I L G+ VL A TG+GKT+A+L P++ HL + + R+ G A++
Sbjct: 92 FVHPTQVQRDSIGPALQGKDVLGAAITGSGKTLAFLIPVLEHL--FMNKWSRTDGVGAII 149
Query: 99 LVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDH 158
+ PTREL Q++E L K+ + H G ++GG+N E+ R+ + +IL+ TPGRLL H
Sbjct: 150 ISPTRELAYQIFETLKKV-GKHHDFSAGLIIGGKNLKFERTRMDQ-CNILICTPGRLLQH 207
Query: 159 LKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQN 218
+ F + + ++ DEADR L++GF K + I++ N + RQ
Sbjct: 208 MDENPLFNTSTMEMLVLDEADRCLDMGFQKTLNSIIE-----NFPPV----------RQT 252
Query: 219 LLLSATLNEKVNHLAKISLETPVLIG 244
LL SAT V LA+++L+ PV +G
Sbjct: 253 LLFSATQTNTVQDLARLNLKDPVYVG 278
Score = 196 (74.1 bits), Expect = 1.3e-41, Sum P(2) = 1.3e-41
Identities = 53/197 (26%), Positives = 98/197 (49%)
Query: 307 LSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRL 366
+++L + QK++VF ++C + Y + + + P L L
Sbjct: 320 ITMLWSFIKNHLKQKIIVFVASCKQAKYLYEIFCKLR------PGSPL---------LAL 364
Query: 367 HGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRVGR 426
+G + Q+ R + F + ++ STDVA+RGLDFP V ++Q D + ++Y+HR GR
Sbjct: 365 YGTLHQDRRIAIYEDFLRKSHVVMFSTDVASRGLDFPAVNWVVQLDCPEDVSQYIHRAGR 424
Query: 427 TARLGERGDSLLFLQPVEMDYLQDLEKHGVSLTEYPLLKVLDSFPLYGQKPRVKKFLTTE 486
+AR RG+ LL L P E +Y+ K +++ + +++ D L+ + +++ FL
Sbjct: 425 SARNKTRGECLLVLTPSEEEYMISALKEQLNI-DIRCVQI-DPKKLFSPRVKIEAFLA-- 480
Query: 487 SHPWI-LSLQNALESFI 502
P + + Q A S+I
Sbjct: 481 QFPELRATAQRAFLSYI 497
Score = 75 (31.5 bits), Expect = 6.2e-29, Sum P(2) = 6.2e-29
Identities = 19/75 (25%), Positives = 37/75 (49%)
Query: 271 EHPSTTMRST--TEDFKLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFST 328
E PS + + T T +P L Q YV + ++ +L S +K+ + QK++VF ++
Sbjct: 286 EEPSASTKKTPNTAVLAVPELLQQSYVVLNLEDKITMLWSFIKN----HLKQKIIVFVAS 341
Query: 329 CDAVDFHYSLLSEFQ 343
C + Y + + +
Sbjct: 342 CKQAKYLYEIFCKLR 356
Score = 43 (20.2 bits), Expect = 1.3e-11, Sum P(2) = 1.3e-11
Identities = 8/15 (53%), Positives = 11/15 (73%)
Query: 300 GSRLAVLLSILKHLF 314
G LA L+ +L+HLF
Sbjct: 121 GKTLAFLIPVLEHLF 135
>TAIR|locus:2130918 [details] [associations]
symbol:AT4G16630 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0003723 EMBL:Z97341 EMBL:AL161544 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000265456 KO:K13181
OMA:RIRKRDH EMBL:AJ010475 EMBL:AK228353 IPI:IPI00542014 PIR:D71433
PIR:T51310 RefSeq:NP_193396.3 UniGene:At.49
ProteinModelPortal:Q9ZRZ8 SMR:Q9ZRZ8 IntAct:Q9ZRZ8 STRING:Q9ZRZ8
PaxDb:Q9ZRZ8 PRIDE:Q9ZRZ8 EnsemblPlants:AT4G16630.1 GeneID:827364
KEGG:ath:AT4G16630 GeneFarm:955 TAIR:At4g16630 InParanoid:Q9ZRZ8
PhylomeDB:Q9ZRZ8 ProtClustDB:CLSN2690957 Genevestigator:Q9ZRZ8
GermOnline:AT4G16630 Uniprot:Q9ZRZ8
Length = 789
Score = 334 (122.6 bits), Expect = 1.3e-41, Sum P(2) = 1.3e-41
Identities = 84/232 (36%), Positives = 131/232 (56%)
Query: 15 FASCSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYL 74
F + +F L L L + E LG++ PT +QA IP+ L+GR + +A TG+GKT A+
Sbjct: 164 FHADTFMELNLSRPLL-RACETLGYKKPTPIQAACIPLALTGRDLCASAITGSGKTAAFA 222
Query: 75 APIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENR 134
P + L + P+ R T L+L PTREL +Q++ ++ L +F I G ++GG +
Sbjct: 223 LPTLERLL-FRPK--RVFATRVLILTPTRELAVQIHSMIQNLA-QFTDIKCGLIVGGLSV 278
Query: 135 SKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEIL 194
+++ LR I+VATPGR++DHL+++ S +L +I DEADR+L+ GF EI E++
Sbjct: 279 REQEVVLRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLQTGFATEITELV 338
Query: 195 DILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLD 246
+ R RQ +L SAT+ E+V L K+SL P+ + D
Sbjct: 339 RLCPKR---------------RQTMLFSATMTEEVKELVKLSLNKPLRLSAD 375
Score = 176 (67.0 bits), Expect = 1.3e-41, Sum P(2) = 1.3e-41
Identities = 57/183 (31%), Positives = 81/183 (44%)
Query: 274 STTMRSTTEDF-KLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAV 332
S TM ++ KL R P R L + + T + + V S C
Sbjct: 351 SATMTEEVKELVKLSLNKPLRLSADPSARRPPGLTEEVVRIRRTREANQEAVLLSLCTRT 410
Query: 333 DFHYSLLSEFQWSPHSQPDMELKQLF--LRCKTFRLHGNMKQEDRRTTFGAFKTEKKALL 390
F ++ +S Q LK LF K LHGN+ Q R + F+ ++ L
Sbjct: 411 -FKSKVII---FSGTKQAAHRLKILFGLAGLKAAELHGNLTQAQRLDSLELFRKQEVDFL 466
Query: 391 LSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRVGRTARLGERGDSLLFLQPVEMDYLQD 450
++TDVAARGLD V+ +I Y E YVHRVGRTAR G G ++ F+ + L+
Sbjct: 467 IATDVAARGLDIIGVQTVINYACPREIDSYVHRVGRTARAGREGYAVTFVTDSDRSLLKV 526
Query: 451 LEK 453
+ K
Sbjct: 527 IAK 529
>TAIR|locus:2173517 [details] [associations]
symbol:AT5G60990 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0009220
"pyrimidine ribonucleotide biosynthetic process" evidence=RCA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0003723 EMBL:AB008269 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268802 KO:K14777 OMA:IFIPSKF
EMBL:AK117799 EMBL:BT005375 EMBL:AY088068 EMBL:AJ010462
IPI:IPI00518446 PIR:T51342 RefSeq:NP_568931.1 UniGene:At.20430
ProteinModelPortal:Q8GY84 SMR:Q8GY84 STRING:Q8GY84 PaxDb:Q8GY84
PRIDE:Q8GY84 EnsemblPlants:AT5G60990.1 GeneID:836220
KEGG:ath:AT5G60990 GeneFarm:923 TAIR:At5g60990 InParanoid:Q8GY84
PhylomeDB:Q8GY84 ProtClustDB:CLSN2690059 Genevestigator:Q8GY84
GermOnline:AT5G60990 Uniprot:Q8GY84
Length = 456
Score = 307 (113.1 bits), Expect = 1.4e-41, Sum P(2) = 1.4e-41
Identities = 91/264 (34%), Positives = 135/264 (51%)
Query: 4 MSKKKETVKEIFASCSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNA 63
M ++ E VK +F+ LG+ L ERLG++ P+K+QA+A+P L G+ V+ A
Sbjct: 1 MEEENEVVK------TFAELGVREELVKAC-ERLGWKNPSKIQAEALPFALEGKDVIGLA 53
Query: 64 ATGTGKTVAYLAPIINHLQSY----SPRIDR--SSGTFALVLVPTRELCLQVYEILHKLL 117
TG+GKT A+ PI+ L Y P+ R FA VL PTREL +Q+ E L
Sbjct: 54 QTGSGKTGAFAIPILQALLEYVYDSEPKKGRRPDPAFFACVLSPTRELAIQIAEQFEALG 113
Query: 118 HRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDE 177
+ ++GG +R ++ L K ++VATPGRL DH+ T F +L++++ DE
Sbjct: 114 ADIS-LRCAVLVGGIDRMQQTIALGKRPHVIVATPGRLWDHMSDTKGFSLKSLKYLVLDE 172
Query: 178 ADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISL 237
ADR+L F K + +IL+ E+ ++R+ L SAT+ +KV L + L
Sbjct: 173 ADRLLNEDFEKSLNQILE--------------EIP-LERKTFLFSATMTKKVRKLQRACL 217
Query: 238 ETPVLIGLDEKKLPED--KSHVRF 259
PV I K D K RF
Sbjct: 218 RNPVKIEAASKYSTVDTLKQQYRF 241
Score = 189 (71.6 bits), Expect = 1.4e-41, Sum P(2) = 1.4e-41
Identities = 44/110 (40%), Positives = 59/110 (53%)
Query: 357 LFLRCKTFR---LHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDS 413
L LR FR + G M Q R FK + +L+ TDVA+RGLD P V +I YD
Sbjct: 278 LVLRSLGFRAIPISGQMTQSKRLGALNKFKAGECNILVCTDVASRGLDIPSVDVVINYDI 337
Query: 414 AGEATEYVHRVGRTARLGERGDSLLFLQPVEMDYLQDLEKH-GVSLTEYP 462
+ +Y+HRVGRTAR G G + + E+++ +EK G L EYP
Sbjct: 338 PTNSKDYIHRVGRTARAGRSGVGISLVNQYELEWYIQIEKLIGKKLPEYP 387
>UNIPROTKB|F1Q073 [details] [associations]
symbol:DDX27 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00550000074997 EMBL:AAEX03013992
Ensembl:ENSCAFT00000018089 Uniprot:F1Q073
Length = 767
Score = 333 (122.3 bits), Expect = 2.0e-41, Sum P(2) = 2.0e-41
Identities = 88/235 (37%), Positives = 130/235 (55%)
Query: 9 ETVKEIFASCSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTG 68
E + + SF + L L + +GF+ PT +Q IPV L G+ + AATGTG
Sbjct: 178 EDASQYDENLSFQDMNLSRPLLKAITA-MGFKQPTPIQKACIPVGLLGKDICACAATGTG 236
Query: 69 KTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYV 128
KT A+ P++ L Y PR +S T LVLVPTREL +QV+ + K L +F I
Sbjct: 237 KTAAFALPVLERL-IYKPR--QSPVTRVLVLVPTRELGIQVHSVT-KQLAQFCNITTCLA 292
Query: 129 MGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGK 188
+GG + ++A LR IL+ATPGRL+DHL + SF +++ +I DEADR+L+ F +
Sbjct: 293 VGGLDVKSQEAALRAAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEE 352
Query: 189 EIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLI 243
+++EI+ + RQ +L SAT+ ++V LA +SL+ PV I
Sbjct: 353 QMKEIIRMCSHH---------------RQTMLFSATMTDEVKDLASVSLKNPVRI 392
Score = 175 (66.7 bits), Expect = 2.0e-41, Sum P(2) = 2.0e-41
Identities = 38/88 (43%), Positives = 50/88 (56%)
Query: 366 LHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRVG 425
LHGN+ Q R FK E+ +L++TDVAARGLD VK +I + YVHRVG
Sbjct: 462 LHGNLSQTQRLEALRRFKDEQIDILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVG 521
Query: 426 RTARLGERGDSLLFLQPVEMDYLQDLEK 453
RTAR G G S+ + E L+++ K
Sbjct: 522 RTARAGRAGRSVSLVGEEERKMLKEIVK 549
Score = 37 (18.1 bits), Expect = 8.5e-09, Sum P(2) = 8.5e-09
Identities = 7/18 (38%), Positives = 13/18 (72%)
Query: 238 ETPVLIGLDEKKLPEDKS 255
E PV++G +K L +++S
Sbjct: 31 EGPVVLGRKQKALQKNRS 48
>UNIPROTKB|J9P9C6 [details] [associations]
symbol:DDX27 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00550000074997 OMA:TRTFTDH EMBL:AAEX03013992
Ensembl:ENSCAFT00000046251 Uniprot:J9P9C6
Length = 788
Score = 333 (122.3 bits), Expect = 2.2e-41, Sum P(2) = 2.2e-41
Identities = 88/235 (37%), Positives = 130/235 (55%)
Query: 9 ETVKEIFASCSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTG 68
E + + SF + L L + +GF+ PT +Q IPV L G+ + AATGTG
Sbjct: 199 EDASQYDENLSFQDMNLSRPLLKAITA-MGFKQPTPIQKACIPVGLLGKDICACAATGTG 257
Query: 69 KTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYV 128
KT A+ P++ L Y PR +S T LVLVPTREL +QV+ + K L +F I
Sbjct: 258 KTAAFALPVLERL-IYKPR--QSPVTRVLVLVPTRELGIQVHSVT-KQLAQFCNITTCLA 313
Query: 129 MGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGK 188
+GG + ++A LR IL+ATPGRL+DHL + SF +++ +I DEADR+L+ F +
Sbjct: 314 VGGLDVKSQEAALRAAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEE 373
Query: 189 EIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLI 243
+++EI+ + RQ +L SAT+ ++V LA +SL+ PV I
Sbjct: 374 QMKEIIRMCSHH---------------RQTMLFSATMTDEVKDLASVSLKNPVRI 413
Score = 175 (66.7 bits), Expect = 2.2e-41, Sum P(2) = 2.2e-41
Identities = 38/88 (43%), Positives = 50/88 (56%)
Query: 366 LHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRVG 425
LHGN+ Q R FK E+ +L++TDVAARGLD VK +I + YVHRVG
Sbjct: 483 LHGNLSQTQRLEALRRFKDEQIDILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVG 542
Query: 426 RTARLGERGDSLLFLQPVEMDYLQDLEK 453
RTAR G G S+ + E L+++ K
Sbjct: 543 RTARAGRAGRSVSLVGEEERKMLKEIVK 570
Score = 37 (18.1 bits), Expect = 9.2e-09, Sum P(2) = 9.2e-09
Identities = 7/18 (38%), Positives = 13/18 (72%)
Query: 238 ETPVLIGLDEKKLPEDKS 255
E PV++G +K L +++S
Sbjct: 54 EGPVVLGRKQKALQKNRS 71
>UNIPROTKB|A1A4H6 [details] [associations]
symbol:DDX27 "Probable ATP-dependent RNA helicase DDX27"
species:9913 "Bos taurus" [GO:0005634 "nucleus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
EMBL:BC126497 IPI:IPI00734460 RefSeq:NP_001073740.1 UniGene:Bt.2644
ProteinModelPortal:A1A4H6 PRIDE:A1A4H6 Ensembl:ENSBTAT00000057089
GeneID:514567 KEGG:bta:514567 CTD:55661
GeneTree:ENSGT00550000074997 HOGENOM:HOG000265456
HOVERGEN:HBG106162 KO:K13181 OMA:TRTFTDH NextBio:20871404
Uniprot:A1A4H6
Length = 765
Score = 331 (121.6 bits), Expect = 3.5e-41, Sum P(2) = 3.5e-41
Identities = 87/235 (37%), Positives = 130/235 (55%)
Query: 9 ETVKEIFASCSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTG 68
E + + SF + L L + +GF+ PT +Q IPV L G+ + AATGTG
Sbjct: 178 EDASQYDENLSFQDMNLSRPLLKAITA-MGFKQPTPIQKACIPVGLLGKDICACAATGTG 236
Query: 69 KTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYV 128
KT A+ P++ L Y PR ++ T LVLVPTREL +QV+ + K L +F I
Sbjct: 237 KTAAFALPVLERL-IYKPR--QAPVTRVLVLVPTRELGIQVHSVT-KQLAQFCSITTCLA 292
Query: 129 MGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGK 188
+GG + ++A LR IL+ATPGRL+DHL + SF +++ +I DEADR+L+ F +
Sbjct: 293 VGGLDVKSQEAALRAAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEE 352
Query: 189 EIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLI 243
+++EI+ + RQ +L SAT+ ++V LA +SL+ PV I
Sbjct: 353 QMKEIIRMCSHH---------------RQTMLFSATMTDEVKDLASVSLKNPVRI 392
Score = 175 (66.7 bits), Expect = 3.5e-41, Sum P(2) = 3.5e-41
Identities = 38/88 (43%), Positives = 50/88 (56%)
Query: 366 LHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRVG 425
LHGN+ Q R FK E+ +L++TDVAARGLD VK +I + YVHRVG
Sbjct: 462 LHGNLSQTQRLEALRRFKDEQIDILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVG 521
Query: 426 RTARLGERGDSLLFLQPVEMDYLQDLEK 453
RTAR G G S+ + E L+++ K
Sbjct: 522 RTARAGRAGRSVSLVGEEERKMLKEIVK 549
>DICTYBASE|DDB_G0280147 [details] [associations]
symbol:ddx47 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0042254 "ribosome biogenesis"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0006364 "rRNA processing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0280147 GO:GO:0005524
GO:GO:0005730 GenomeReviews:CM000152_GR GO:GO:0003723
EMBL:AAFI02000035 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HSSP:Q5STU4 KO:K14777 OMA:IFIPSKF
RefSeq:XP_641271.1 ProteinModelPortal:Q54VT4 SMR:Q54VT4
EnsemblProtists:DDB0234204 GeneID:8622403 KEGG:ddi:DDB_G0280147
Uniprot:Q54VT4
Length = 546
Score = 302 (111.4 bits), Expect = 4.5e-41, Sum P(2) = 4.5e-41
Identities = 75/243 (30%), Positives = 124/243 (51%)
Query: 6 KKKETVKEIFASCSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAAT 65
KK E ++ + + +F SLG+H + D +LGF P ++Q ++IP L GR ++ A T
Sbjct: 107 KKSEEEEKKYENVTFESLGVHPQIIDACN-KLGFNKPKEIQRESIPWALKGRDIIGLAQT 165
Query: 66 GTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVP 125
G+GKT A++ P++ L ++ G F L L PTREL Q+ + + + +
Sbjct: 166 GSGKTAAFVIPVLQKL------LEAPQGLFCLALAPTRELAYQIADQFNAIGSTIG-VKT 218
Query: 126 GYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELG 185
++GG + + L K ++V +PGR+L HL+HT F ++++ I DEADR+
Sbjct: 219 CVLVGGIDSMSQSLALAKKPHVVVGSPGRVLHHLEHTKGFNLRSIKYFIMDEADRLFSAD 278
Query: 186 FGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGL 245
F +E+ IL ++ +R L SAT+ KV L + SL PV + +
Sbjct: 279 FEEEVNNILKVIPK---------------ERNTYLFSATMTSKVAKLQRASLVNPVKVQV 323
Query: 246 DEK 248
K
Sbjct: 324 ASK 326
Score = 200 (75.5 bits), Expect = 4.5e-41, Sum P(2) = 4.5e-41
Identities = 50/125 (40%), Positives = 70/125 (56%)
Query: 366 LHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRVG 425
++G+M Q R + FK K++L++TDVAARGLD P V +I YD + EYVHRVG
Sbjct: 388 INGDMDQGKRLASLNKFKQGTKSILVATDVAARGLDIPSVDLVINYDVPTNSKEYVHRVG 447
Query: 426 RTARLGERGDSLLFLQPVEMDYLQDLEKHGVSLTEYPLLKVLDSFPLYGQKPRVKKFL-- 483
RTAR G G ++ + +++ Q +E + L K LDSFP Q+ V FL
Sbjct: 448 RTARAGNSGRAITIVTQYDVEMYQRIE--------FVLKKKLDSFPC--QEETVLIFLER 497
Query: 484 TTESH 488
E+H
Sbjct: 498 VQEAH 502
Score = 41 (19.5 bits), Expect = 1.8e-12, Sum P(2) = 1.8e-12
Identities = 11/50 (22%), Positives = 27/50 (54%)
Query: 223 ATLNEKVNHLAKISLETPVLIGLDEKKLPEDKSHVRFGSLESDVKEEVEH 272
+TL EK + K V+ +EK++ E++ ++ ++K+E+++
Sbjct: 35 STLTEKPKQIVK-----KVIKKQEEKEVKEEEEEEVKEEIKKEIKKEIKN 79
>SGD|S000001107 [details] [associations]
symbol:RRP3 "Protein involved in rRNA processing"
species:4932 "Saccharomyces cerevisiae" [GO:0042254 "ribosome
biogenesis" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=IDA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000462 "maturation of
SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA,
LSU-rRNA)" evidence=IMP] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008186 "RNA-dependent ATPase activity"
evidence=IDA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IC] [GO:0006364 "rRNA processing"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 SGD:S000001107 GO:GO:0005524
GO:GO:0005730 EMBL:BK006934 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 EMBL:U00061 HOGENOM:HOG000268802
GO:GO:0000462 GeneTree:ENSGT00670000098028 KO:K14777 OMA:IFIPSKF
OrthoDB:EOG4ZPJ3P EMBL:AY389302 EMBL:AY389303 PIR:S46713
RefSeq:NP_011932.2 ProteinModelPortal:P38712 SMR:P38712
DIP:DIP-6533N IntAct:P38712 MINT:MINT-518716 STRING:P38712
PaxDb:P38712 PeptideAtlas:P38712 EnsemblFungi:YHR065C GeneID:856462
KEGG:sce:YHR065C CYGD:YHR065c NextBio:982111 Genevestigator:P38712
GermOnline:YHR065C Uniprot:P38712
Length = 501
Score = 301 (111.0 bits), Expect = 9.1e-41, Sum P(2) = 9.1e-41
Identities = 81/245 (33%), Positives = 126/245 (51%)
Query: 4 MSKKKETVKEIFASCSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNA 63
+S + E E + SFS L L L Q + L + PT +Q++AIP L G ++ A
Sbjct: 67 VSTQNENTNEDESFESFSELNLVPELI-QACKNLNYSKPTPIQSKAIPPALEGHDIIGLA 125
Query: 64 ATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWI 123
TG+GKT A+ PI+N L D+ +A +L PTREL Q+ E L +
Sbjct: 126 QTGSGKTAAFAIPILNRLWH-----DQEP-YYACILAPTRELAQQIKETFDSL-GSLMGV 178
Query: 124 VPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILE 183
++GG N + L + I++ATPGRL+DHL++T F L++++ DEADR+L+
Sbjct: 179 RSTCIVGGMNMMDQARDLMRKPHIIIATPGRLMDHLENTKGFSLRKLKFLVMDEADRLLD 238
Query: 184 LGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLI 243
+ FG ++ IL I+ ++ +R L SAT+ K++ L + SL PV
Sbjct: 239 MEFGPVLDRILKIIPTQ--------------ERTTYLFSATMTSKIDKLQRASLTNPVKC 284
Query: 244 GLDEK 248
+ K
Sbjct: 285 AVSNK 289
Score = 195 (73.7 bits), Expect = 9.1e-41, Sum P(2) = 9.1e-41
Identities = 35/88 (39%), Positives = 56/88 (63%)
Query: 366 LHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRVG 425
LHG++ Q R + FK K+++L++TDVAARGLD P V ++ YD ++ Y+HRVG
Sbjct: 351 LHGDLNQNQRMGSLDLFKAGKRSILVATDVAARGLDIPSVDIVVNYDIPVDSKSYIHRVG 410
Query: 426 RTARLGERGDSLLFLQPVEMDYLQDLEK 453
RTAR G G S+ + +++ + +E+
Sbjct: 411 RTARAGRSGKSISLVSQYDLELILRIEE 438
>UNIPROTKB|Q96GQ7 [details] [associations]
symbol:DDX27 "Probable ATP-dependent RNA helicase DDX27"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
CTD:55661 HOVERGEN:HBG106162 KO:K13181 OMA:TRTFTDH EMBL:AY044431
EMBL:AF336851 EMBL:AL049766 EMBL:AL357560 EMBL:BC009304
EMBL:BC011927 EMBL:BC016060 EMBL:BC126287 EMBL:BC130275
EMBL:BC144125 EMBL:AK022979 EMBL:AK000603 EMBL:AF193054
EMBL:AF161377 IPI:IPI00293078 RefSeq:NP_060365.7 UniGene:Hs.129261
UniGene:Hs.65234 ProteinModelPortal:Q96GQ7 SMR:Q96GQ7 IntAct:Q96GQ7
MINT:MINT-1420816 STRING:Q96GQ7 PhosphoSite:Q96GQ7 DMDM:29427946
SWISS-2DPAGE:Q96GQ7 PaxDb:Q96GQ7 PeptideAtlas:Q96GQ7 PRIDE:Q96GQ7
DNASU:55661 Ensembl:ENST00000371764 GeneID:55661 KEGG:hsa:55661
UCSC:uc002xuh.3 GeneCards:GC20P047835 HGNC:HGNC:15837 HPA:HPA047087
neXtProt:NX_Q96GQ7 PharmGKB:PA27213 InParanoid:Q96GQ7
OrthoDB:EOG4NVZJV PhylomeDB:Q96GQ7 ChiTaRS:DDX27 GenomeRNAi:55661
NextBio:60399 ArrayExpress:Q96GQ7 Bgee:Q96GQ7 CleanEx:HS_DDX27
Genevestigator:Q96GQ7 GermOnline:ENSG00000124228 Uniprot:Q96GQ7
Length = 796
Score = 329 (120.9 bits), Expect = 9.8e-41, Sum P(2) = 9.8e-41
Identities = 86/235 (36%), Positives = 130/235 (55%)
Query: 9 ETVKEIFASCSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTG 68
E + + SF + L L + +GF+ PT +Q IPV L G+ + AATGTG
Sbjct: 209 EDASQYDENLSFQDMNLSRPLLKAITA-MGFKQPTPIQKACIPVGLLGKDICACAATGTG 267
Query: 69 KTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYV 128
KT A+ P++ L Y PR ++ T LVLVPTREL +QV+ + +L +F I
Sbjct: 268 KTAAFALPVLERL-IYKPR--QAPVTRVLVLVPTRELGIQVHSVTRQLA-QFCNITTCLA 323
Query: 129 MGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGK 188
+GG + ++A LR IL+ATPGRL+DHL + SF +++ +I DEADR+L+ F +
Sbjct: 324 VGGLDVKSQEAALRAAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEE 383
Query: 189 EIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLI 243
+++EI+ + RQ +L SAT+ ++V LA +SL+ PV I
Sbjct: 384 QMKEIIRMCSHH---------------RQTMLFSATMTDEVKDLASVSLKNPVRI 423
Score = 174 (66.3 bits), Expect = 9.8e-41, Sum P(2) = 9.8e-41
Identities = 38/88 (43%), Positives = 50/88 (56%)
Query: 366 LHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRVG 425
LHGN+ Q R FK E+ +L++TDVAARGLD VK +I + YVHRVG
Sbjct: 493 LHGNLSQTQRLEALRRFKDEQIDILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVG 552
Query: 426 RTARLGERGDSLLFLQPVEMDYLQDLEK 453
RTAR G G S+ + E L+++ K
Sbjct: 553 RTARAGRAGRSVSLVGEDERKMLKEIVK 580
>GENEDB_PFALCIPARUM|PFL2475w [details] [associations]
symbol:PFL2475w "DEAD/DEAH box helicase,
putative" species:5833 "Plasmodium falciparum" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014188 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 InterPro:IPR014014 PROSITE:PS51195
HSSP:Q58083 KO:K13181 RefSeq:XP_001350899.1
ProteinModelPortal:Q8I4R9 EnsemblProtists:PFL2475w:mRNA
GeneID:811547 KEGG:pfa:PFL2475w EuPathDB:PlasmoDB:PF3D7_1251500
HOGENOM:HOG000283593 OMA:ANSFMEL ProtClustDB:CLSZ2433580
Uniprot:Q8I4R9
Length = 717
Score = 331 (121.6 bits), Expect = 1.8e-40, Sum P(2) = 1.8e-40
Identities = 106/341 (31%), Positives = 170/341 (49%)
Query: 7 KKETVKEIFASCSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATG 66
KK I +C +S L + L E+ F PT +Q IP+ L G+ +L N+ TG
Sbjct: 76 KKNNNNIIDMNCLWSDLYISRPFLKVLYEQK-FSNPTYIQRDVIPLALEGKSILANSETG 134
Query: 67 TGKTVAYLAPIINHL-QSYSPRIDRSS--GTF----ALVLVPTRELCLQVYEILHKLLHR 119
+GKT+A++ PI+ L QS + ++ R++ G++ AL+L+PTREL LQ Y+++ L +
Sbjct: 135 SGKTLAFVLPILERLLQSVNIKMRRNNMKGSYNITKALILLPTRELSLQCYDVIRSLT-K 193
Query: 120 FHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEAD 179
+ I GG + +++ +K I V TPGR+LD L ++SS L ++FDEAD
Sbjct: 194 YVTITYSLFCGGIDIKQQEYEFKKRNDIFVCTPGRILDLLLNSSSDFINYLEIVVFDEAD 253
Query: 180 RILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLET 239
++LELGF +E +ILD V K+Q L SATL + LA SL+
Sbjct: 254 KLLELGFKEECLKILD---------------VCKFKKQILFFSATLTSDIKQLANFSLKN 298
Query: 240 PVLI--GLD-EKKLPEDKSHVRFGSL----ESD----VKEEVEHPSTTMRSTTEDFKLPA 288
PV I G+ +K + ++ + + ++D V + S S FK+
Sbjct: 299 PVFIQSGMSFDKNVDGKNTYNAYNTCNTYNDNDNNNIVVNNIISNSFLKISNKASFKISE 358
Query: 289 QLVQRYVKVPCGS-RLAVLLSILKHLFDTEVSQKLVVFFST 328
L Q +V + R A LL + +++ ++FF T
Sbjct: 359 NLKQEFVNIIQEKYRKASLLYLCNNIYKNHC----IIFFKT 395
Score = 167 (63.8 bits), Expect = 1.8e-40, Sum P(2) = 1.8e-40
Identities = 37/91 (40%), Positives = 56/91 (61%)
Query: 357 LFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGE 416
L LRC LHG+M Q+ R + FK + LL+T++A+RG+D V +I Y+
Sbjct: 409 LNLRCA--ELHGSMSQKKRIESIMKFKKAEVDFLLTTELASRGIDIDHVLYVINYNVPSN 466
Query: 417 ATEYVHRVGRTARLGERG-DSLLFLQPVEMD 446
+YVHR+GRTAR+G+ G S L+LQ +++
Sbjct: 467 VIKYVHRIGRTARIGKEGIASTLYLQKEKIE 497
>UNIPROTKB|Q8I4R9 [details] [associations]
symbol:PFL2475w "DEAD/DEAH box helicase, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014188 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 InterPro:IPR014014 PROSITE:PS51195
HSSP:Q58083 KO:K13181 RefSeq:XP_001350899.1
ProteinModelPortal:Q8I4R9 EnsemblProtists:PFL2475w:mRNA
GeneID:811547 KEGG:pfa:PFL2475w EuPathDB:PlasmoDB:PF3D7_1251500
HOGENOM:HOG000283593 OMA:ANSFMEL ProtClustDB:CLSZ2433580
Uniprot:Q8I4R9
Length = 717
Score = 331 (121.6 bits), Expect = 1.8e-40, Sum P(2) = 1.8e-40
Identities = 106/341 (31%), Positives = 170/341 (49%)
Query: 7 KKETVKEIFASCSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATG 66
KK I +C +S L + L E+ F PT +Q IP+ L G+ +L N+ TG
Sbjct: 76 KKNNNNIIDMNCLWSDLYISRPFLKVLYEQK-FSNPTYIQRDVIPLALEGKSILANSETG 134
Query: 67 TGKTVAYLAPIINHL-QSYSPRIDRSS--GTF----ALVLVPTRELCLQVYEILHKLLHR 119
+GKT+A++ PI+ L QS + ++ R++ G++ AL+L+PTREL LQ Y+++ L +
Sbjct: 135 SGKTLAFVLPILERLLQSVNIKMRRNNMKGSYNITKALILLPTRELSLQCYDVIRSLT-K 193
Query: 120 FHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEAD 179
+ I GG + +++ +K I V TPGR+LD L ++SS L ++FDEAD
Sbjct: 194 YVTITYSLFCGGIDIKQQEYEFKKRNDIFVCTPGRILDLLLNSSSDFINYLEIVVFDEAD 253
Query: 180 RILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLET 239
++LELGF +E +ILD V K+Q L SATL + LA SL+
Sbjct: 254 KLLELGFKEECLKILD---------------VCKFKKQILFFSATLTSDIKQLANFSLKN 298
Query: 240 PVLI--GLD-EKKLPEDKSHVRFGSL----ESD----VKEEVEHPSTTMRSTTEDFKLPA 288
PV I G+ +K + ++ + + ++D V + S S FK+
Sbjct: 299 PVFIQSGMSFDKNVDGKNTYNAYNTCNTYNDNDNNNIVVNNIISNSFLKISNKASFKISE 358
Query: 289 QLVQRYVKVPCGS-RLAVLLSILKHLFDTEVSQKLVVFFST 328
L Q +V + R A LL + +++ ++FF T
Sbjct: 359 NLKQEFVNIIQEKYRKASLLYLCNNIYKNHC----IIFFKT 395
Score = 167 (63.8 bits), Expect = 1.8e-40, Sum P(2) = 1.8e-40
Identities = 37/91 (40%), Positives = 56/91 (61%)
Query: 357 LFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGE 416
L LRC LHG+M Q+ R + FK + LL+T++A+RG+D V +I Y+
Sbjct: 409 LNLRCA--ELHGSMSQKKRIESIMKFKKAEVDFLLTTELASRGIDIDHVLYVINYNVPSN 466
Query: 417 ATEYVHRVGRTARLGERG-DSLLFLQPVEMD 446
+YVHR+GRTAR+G+ G S L+LQ +++
Sbjct: 467 VIKYVHRIGRTARIGKEGIASTLYLQKEKIE 497
>POMBASE|SPAC30D11.03 [details] [associations]
symbol:ddx27 "ATP-dependent RNA helicase Ddx27/Drs1
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISO] [GO:0005524 "ATP binding" evidence=ISM]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=ISO;IDA] [GO:0006364 "rRNA processing" evidence=ISO]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 PomBase:SPAC30D11.03 GO:GO:0005524 EMBL:CU329670
GO:GO:0005730 GenomeReviews:CU329670_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000265456 KO:K13181 OrthoDB:EOG4B01XM PIR:S62561
RefSeq:NP_593214.1 ProteinModelPortal:Q09903 STRING:Q09903
EnsemblFungi:SPAC30D11.03.1 GeneID:2543155 KEGG:spo:SPAC30D11.03
NextBio:20804181 Uniprot:Q09903
Length = 754
Score = 346 (126.9 bits), Expect = 1.8e-40, Sum P(2) = 1.8e-40
Identities = 83/231 (35%), Positives = 130/231 (56%)
Query: 19 SFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPII 78
SF S+ L + L LGFE PT++Q + IP+ L G+ ++ A TG+GKT A++ PI+
Sbjct: 260 SFQSMNLSRPILKGL-SNLGFEVPTQIQDKTIPLALLGKDIVGAAVTGSGKTAAFIVPIL 318
Query: 79 NHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEK 138
L Y P+ + T L+L PTREL +Q + + K+ F I+ +GG + ++
Sbjct: 319 ERLL-YRPK--KVPTTRVLILCPTRELAMQCHSVATKIAS-FTDIMVCLCIGGLSLKLQE 374
Query: 139 ARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILG 198
LRK I++ATPGR +DH++++ F N+ ++ DEADR+LE GF E+ EI+
Sbjct: 375 QELRKRPDIVIATPGRFIDHMRNSQGFTVENIEIMVMDEADRMLEDGFADELNEII---- 430
Query: 199 SRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKK 249
+ RQ +L SAT+ +KV+ L ++SL PV + +D KK
Sbjct: 431 -----------QACPKSRQTMLFSATMTDKVDDLIRLSLNRPVRVFVDNKK 470
Score = 149 (57.5 bits), Expect = 1.8e-40, Sum P(2) = 1.8e-40
Identities = 29/72 (40%), Positives = 44/72 (61%)
Query: 366 LHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRVG 425
+HG++ QE R F+ K LL+TDVA+RG+D ++ +I Y++ Y+HRVG
Sbjct: 534 IHGSLSQEQRVRALEDFRDGKCNYLLATDVASRGIDIKGIEVVINYEAPATHEVYLHRVG 593
Query: 426 RTARLGERGDSL 437
RTAR G G ++
Sbjct: 594 RTARAGRSGRAI 605
Score = 44 (20.5 bits), Expect = 1.9e-29, Sum P(2) = 1.9e-29
Identities = 12/33 (36%), Positives = 16/33 (48%)
Query: 374 DRRTTFGAFKTEKKALLLSTDVAARGLDFPKVK 406
DR+ G FK +T + R LDF KV+
Sbjct: 612 DRKVLKGVFKNSSAQ---NTKLVNRNLDFNKVE 641
Score = 40 (19.1 bits), Expect = 2.7e-06, Sum P(2) = 2.7e-06
Identities = 10/42 (23%), Positives = 19/42 (45%)
Query: 181 ILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLS 222
+ E K++ D+ ++GS E N SN + ++S
Sbjct: 98 LFEADVNKDLSSATDMNWDFDMGSKTESNRASNTVDLDAIIS 139
>UNIPROTKB|Q9KS53 [details] [associations]
symbol:VC1407 "ATP-dependent RNA helicase RhlE"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
[GO:0008152 "metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GenomeReviews:AE003852_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 OMA:FRNLCAI HSSP:P10081 EMBL:AE004219 PIR:D82203
RefSeq:NP_231050.1 ProteinModelPortal:Q9KS53 DNASU:2614039
GeneID:2614039 KEGG:vch:VC1407 PATRIC:20081876
ProtClustDB:CLSK874358 Uniprot:Q9KS53
Length = 397
Score = 318 (117.0 bits), Expect = 2.3e-40, Sum P(2) = 2.3e-40
Identities = 73/181 (40%), Positives = 108/181 (59%)
Query: 19 SFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPII 78
SFS LGL L + + LG++ PT +Q QAIPVIL GR ++ A TGTGKT +++ PI+
Sbjct: 2 SFSQLGLSDVLVQTVAQ-LGYQKPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPIL 60
Query: 79 NHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEK 138
L+ + R AL+LVPTREL +QV E + + + + V GG + +K
Sbjct: 61 EKLRQ--GQTQRKKRVRALILVPTRELAMQVAEKVEQY-GKDTGLKSLAVFGGVDEQAQK 117
Query: 139 ARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILG 198
RL G+ +LVATPGRL+D + + + ++ DEADR+L++GF + I +I+D L
Sbjct: 118 QRLIDGVDVLVATPGRLMDLYGQRAVYFE-EIEMVVLDEADRMLDMGFIESINKIIDCLP 176
Query: 199 S 199
S
Sbjct: 177 S 177
Score = 165 (63.1 bits), Expect = 7.9e-19, Sum P(2) = 7.9e-19
Identities = 44/113 (38%), Positives = 63/113 (55%)
Query: 128 VMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFG 187
V GG + +K RL G+ +LVATPGRL+D + + + ++ DEADR+L++GF
Sbjct: 107 VFGGVDEQAQKQRLIDGVDVLVATPGRLMDLYGQRAVYFE-EIEMVVLDEADRMLDMGFI 165
Query: 188 KEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETP 240
+ I +I+D L S EV Q LL SATL+ KV LAK ++ P
Sbjct: 166 ESINKIIDCLPS----------EV-----QFLLFSATLSRKVRELAKTAVRDP 203
Score = 135 (52.6 bits), Expect = 2.3e-40, Sum P(2) = 2.3e-40
Identities = 42/136 (30%), Positives = 68/136 (50%)
Query: 316 TEVSQKLV-VFFSTCDAVDFHYSLLSEFQW--------SPHSQPDM--ELKQLFLRCKTF 364
+ +SQ L+ V T A+ H L++E QW + H + +L++ + + F
Sbjct: 216 SNISQWLITVDKDTKSALLSH--LINEQQWDQALIFIETKHGAAKLVSQLEKRGIHAEAF 273
Query: 365 RLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRV 424
H Q R FK+ K L++T VAARG+D ++ ++ YD A EYVHR+
Sbjct: 274 --HSGRSQAIRAQLLEDFKSGKIKYLVATGVAARGIDIDQLSRVVNYDLPFPADEYVHRI 331
Query: 425 GRTARLGERGDSLLFL 440
GRT R G+++ F+
Sbjct: 332 GRTGRAEAVGEAISFV 347
>TIGR_CMR|VC_1407 [details] [associations]
symbol:VC_1407 "ATP-dependent RNA helicase RhlE"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GenomeReviews:AE003852_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 OMA:FRNLCAI HSSP:P10081 EMBL:AE004219 PIR:D82203
RefSeq:NP_231050.1 ProteinModelPortal:Q9KS53 DNASU:2614039
GeneID:2614039 KEGG:vch:VC1407 PATRIC:20081876
ProtClustDB:CLSK874358 Uniprot:Q9KS53
Length = 397
Score = 318 (117.0 bits), Expect = 2.3e-40, Sum P(2) = 2.3e-40
Identities = 73/181 (40%), Positives = 108/181 (59%)
Query: 19 SFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPII 78
SFS LGL L + + LG++ PT +Q QAIPVIL GR ++ A TGTGKT +++ PI+
Sbjct: 2 SFSQLGLSDVLVQTVAQ-LGYQKPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPIL 60
Query: 79 NHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEK 138
L+ + R AL+LVPTREL +QV E + + + + V GG + +K
Sbjct: 61 EKLRQ--GQTQRKKRVRALILVPTRELAMQVAEKVEQY-GKDTGLKSLAVFGGVDEQAQK 117
Query: 139 ARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILG 198
RL G+ +LVATPGRL+D + + + ++ DEADR+L++GF + I +I+D L
Sbjct: 118 QRLIDGVDVLVATPGRLMDLYGQRAVYFE-EIEMVVLDEADRMLDMGFIESINKIIDCLP 176
Query: 199 S 199
S
Sbjct: 177 S 177
Score = 165 (63.1 bits), Expect = 7.9e-19, Sum P(2) = 7.9e-19
Identities = 44/113 (38%), Positives = 63/113 (55%)
Query: 128 VMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFG 187
V GG + +K RL G+ +LVATPGRL+D + + + ++ DEADR+L++GF
Sbjct: 107 VFGGVDEQAQKQRLIDGVDVLVATPGRLMDLYGQRAVYFE-EIEMVVLDEADRMLDMGFI 165
Query: 188 KEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETP 240
+ I +I+D L S EV Q LL SATL+ KV LAK ++ P
Sbjct: 166 ESINKIIDCLPS----------EV-----QFLLFSATLSRKVRELAKTAVRDP 203
Score = 135 (52.6 bits), Expect = 2.3e-40, Sum P(2) = 2.3e-40
Identities = 42/136 (30%), Positives = 68/136 (50%)
Query: 316 TEVSQKLV-VFFSTCDAVDFHYSLLSEFQW--------SPHSQPDM--ELKQLFLRCKTF 364
+ +SQ L+ V T A+ H L++E QW + H + +L++ + + F
Sbjct: 216 SNISQWLITVDKDTKSALLSH--LINEQQWDQALIFIETKHGAAKLVSQLEKRGIHAEAF 273
Query: 365 RLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRV 424
H Q R FK+ K L++T VAARG+D ++ ++ YD A EYVHR+
Sbjct: 274 --HSGRSQAIRAQLLEDFKSGKIKYLVATGVAARGIDIDQLSRVVNYDLPFPADEYVHRI 331
Query: 425 GRTARLGERGDSLLFL 440
GRT R G+++ F+
Sbjct: 332 GRTGRAEAVGEAISFV 347
>WB|WBGene00022148 [details] [associations]
symbol:Y71G12B.8 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0040007 GO:GO:0040010 GO:GO:0002119 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00550000074997 EMBL:FO080942 RefSeq:NP_490891.2
ProteinModelPortal:Q95XM9 SMR:Q95XM9 PaxDb:Q95XM9
EnsemblMetazoa:Y71G12B.8 GeneID:171743 KEGG:cel:CELE_Y71G12B.8
UCSC:Y71G12B.8 CTD:171743 WormBase:Y71G12B.8 InParanoid:Q95XM9
OMA:ETDREAM NextBio:872509 Uniprot:Q95XM9
Length = 739
Score = 350 (128.3 bits), Expect = 3.2e-40, Sum P(2) = 3.2e-40
Identities = 89/233 (38%), Positives = 137/233 (58%)
Query: 38 GFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFAL 97
G+ PT +Q IPV L+G+ + AATGTGKT A++ PI+ + Y P+ +S T L
Sbjct: 167 GYSDPTPIQQACIPVALTGKDICACAATGTGKTAAFVLPILERM-IYRPK--GASCTRVL 223
Query: 98 VLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLD 157
VLVPTREL +QV+++ KL F + GG + ++A LR G ++VATPGRL+D
Sbjct: 224 VLVPTRELAIQVFQVFRKL-STFIQLEVCLCAGGLDLKAQEAALRSGPDVVVATPGRLID 282
Query: 158 HLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQ 217
HL ++ SF +N+ ++ DEADR+LE F ++ E++ + ++N RQ
Sbjct: 283 HLHNSPSFNLSNIEVLVLDEADRMLEEAFRDQMNELIRLC-AQN--------------RQ 327
Query: 218 NLLLSATLNEKVNHLAKISLETPVLIGLDEK-----KLPEDKSHVRFGSLESD 265
LL SAT+ E+++ LA +SL+ PV I ++E KL ++ +R G E+D
Sbjct: 328 TLLFSATMTEEIDELASMSLQKPVKIFINENTDTALKLRQEFIRIRAGR-ETD 379
Score = 141 (54.7 bits), Expect = 3.2e-40, Sum P(2) = 3.2e-40
Identities = 32/100 (32%), Positives = 55/100 (55%)
Query: 352 MELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQY 411
M++ L K ++ ++ Q R + FK + +L+STD+A+RGLD V+ +I
Sbjct: 409 MQILLGLLGIKVGQMQSSLTQGQRIESLSKFKKAEIDVLVSTDLASRGLDIEGVQTVINM 468
Query: 412 DSAGEATEYVHRVGRTARLGERGDSLLFLQPVEMDYLQDL 451
+ +Y+HRVGRTAR G+ G S+ + E L+++
Sbjct: 469 NMPKSIKQYIHRVGRTARAGKAGRSISLVGEDERKLLKEI 508
>UNIPROTKB|F1NYX0 [details] [associations]
symbol:DDX49 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00670000098028 OMA:CQLLSMT EMBL:AADN02071779
EMBL:AADN02071780 IPI:IPI00822654 Ensembl:ENSGALT00000035055
ArrayExpress:F1NYX0 Uniprot:F1NYX0
Length = 482
Score = 308 (113.5 bits), Expect = 6.7e-40, Sum P(2) = 6.7e-40
Identities = 91/272 (33%), Positives = 140/272 (51%)
Query: 19 SFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPII 78
+F LGL L +Q R+ +G PT VQA IP IL GR L A TG+GKT A++ P++
Sbjct: 6 AFRELGLAPWLVEQARQ-MGLSRPTPVQASCIPPILQGRDCLGCAKTGSGKTAAFVLPVL 64
Query: 79 NHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEK 138
L S P G F LVL PTREL Q+ E ++L + + V+GG + +
Sbjct: 65 QVL-SEDPY-----GIFCLVLTPTRELAYQIAEQF-RVLGKPLGLKDCVVVGGLDMVAQA 117
Query: 139 ARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELG---FGKEIEEILD 195
L + +++ATPGRL DHL+ +++F L++++ DEADR+LE G F ++E IL+
Sbjct: 118 LELSRKPHVVIATPGRLADHLRSSNTFSLKKLKFLVLDEADRLLEQGCADFTADLEVILE 177
Query: 196 ILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLPEDKS 255
+ +R RQ LL SATL + +N L +++ P + D+
Sbjct: 178 AVPAR---------------RQTLLFSATLTDTLNELKSLAMNRPFFWEAASEVRTVDEL 222
Query: 256 HVRFGSLESDVKEE-VEHPSTTMRSTTEDFKL 286
R+ + VK+ + H T + ED+ +
Sbjct: 223 DQRYLLVPEAVKDAYLVHLIQTFQDEHEDWSI 254
Score = 176 (67.0 bits), Expect = 6.7e-40, Sum P(2) = 6.7e-40
Identities = 43/124 (34%), Positives = 69/124 (55%)
Query: 351 DMELKQLFLRCKTF---RLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKC 407
+ ++ + LR +F LH MKQ R FK+ +L++TDVAARGLD P V+
Sbjct: 263 ECQILNMMLRKFSFPSVALHSMMKQRQRFAALAKFKSSIFKILIATDVAARGLDIPTVQV 322
Query: 408 IIQYDSAGEATEYVHRVGRTARLGERGDSLLFLQPVEMDYLQDLEKH-GVSLTEYPLLK- 465
+I +++ G Y+HRVGRTAR G G S+ + ++ + +E+ + L E+ + +
Sbjct: 323 VINHNTPGLPKIYIHRVGRTARAGRNGISITMVTQYDIHLVHAIEEEIKLKLQEFSVEEK 382
Query: 466 -VLD 468
VLD
Sbjct: 383 LVLD 386
>ZFIN|ZDB-GENE-031030-3 [details] [associations]
symbol:ddx49 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
49" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-031030-3 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 KO:K14778
HOVERGEN:HBG100512 CTD:54555 EMBL:BC047834 IPI:IPI00551936
RefSeq:NP_938179.1 UniGene:Dr.77634 ProteinModelPortal:Q7ZUT9
STRING:Q7ZUT9 GeneID:386632 KEGG:dre:386632 InParanoid:Q7ZUT9
NextBio:20813961 ArrayExpress:Q7ZUT9 Uniprot:Q7ZUT9
Length = 468
Score = 295 (108.9 bits), Expect = 8.4e-40, Sum P(2) = 8.4e-40
Identities = 81/225 (36%), Positives = 120/225 (53%)
Query: 19 SFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPII 78
+F SLGL L Q ++ +G PT VQ + IP IL GR + A TG+GKT A++ P++
Sbjct: 3 TFESLGLSEWLIQQCKQ-MGISRPTAVQEKCIPAILDGRDCMGCAKTGSGKTAAFVLPVL 61
Query: 79 NHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEK 138
L S P G F LVL PTREL Q+ E ++L + + ++GG + +
Sbjct: 62 QKL-SEDPY-----GVFCLVLTPTRELAYQIAEQF-RVLGKPLGLKDCIIVGGMDMVTQG 114
Query: 139 ARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELG---FGKEIEEILD 195
L K ++VATPGRL DH++ + + ++++I DEADR+LE G F K++E IL
Sbjct: 115 LELSKKPHVVVATPGRLADHIRSSDTINLNRIQFLIMDEADRLLEQGCTDFTKDLEVILS 174
Query: 196 ILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETP 240
+ + KRQ LL SATL + + L I++ P
Sbjct: 175 AVPA---------------KRQTLLFSATLTDTLQQLQSIAMNRP 204
Score = 190 (71.9 bits), Expect = 8.4e-40, Sum P(2) = 8.4e-40
Identities = 39/102 (38%), Positives = 58/102 (56%)
Query: 363 TFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVH 422
T LH MKQ R FK+ +L++TDVAARGLD P V+ +I +++ G Y+H
Sbjct: 275 TISLHSMMKQRQRFANLAKFKSNVFKILIATDVAARGLDIPTVQVVINHNTPGLPKIYIH 334
Query: 423 RVGRTARLGERGDSLLFLQPVEMDYLQDLEKHG-VSLTEYPL 463
RVGRTAR G G S+ + ++ + +E+ L E+P+
Sbjct: 335 RVGRTARAGRNGVSITLVTQYDIHLINAIEEQNQTKLKEFPI 376
Score = 68 (29.0 bits), Expect = 5.2e-27, Sum P(2) = 5.2e-27
Identities = 21/86 (24%), Positives = 40/86 (46%)
Query: 283 DFKLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEF 342
D + +L QR++ P + A L+ +++ D +++F +TC + +L EF
Sbjct: 212 DVQTVEELDQRFILTPEKVKDAYLVHLIQTFQDEHDDWSIIIFTNTCKSCQILTMMLREF 271
Query: 343 QW---SPHSQPDMELKQLFLRCKTFR 365
+ S HS M+ +Q F F+
Sbjct: 272 NFPTISLHSM--MKQRQRFANLAKFK 295
>TAIR|locus:2037416 [details] [associations]
symbol:RCF1 "regulator of CBF gene expression 1"
species:3702 "Arabidopsis thaliana" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA;ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005524 GO:GO:0003723 EMBL:AC007369
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K12811
HOGENOM:HOG000007229 EMBL:BT002030 IPI:IPI00537100 PIR:H86341
RefSeq:NP_173516.1 UniGene:At.41680 UniGene:At.48212
ProteinModelPortal:Q8H0U8 SMR:Q8H0U8 PaxDb:Q8H0U8 PRIDE:Q8H0U8
EnsemblPlants:AT1G20920.1 GeneID:838685 KEGG:ath:AT1G20920
KEGG:dosa:Os08t0154225-00 KEGG:dosa:Os08t0159900-01 GeneFarm:1021
TAIR:At1g20920 InParanoid:Q8H0U8 OMA:QIHSDIR PhylomeDB:Q8H0U8
ProtClustDB:CLSN2679447 Genevestigator:Q8H0U8 GermOnline:AT1G20920
Uniprot:Q8H0U8
Length = 1166
Score = 305 (112.4 bits), Expect = 9.7e-40, Sum P(2) = 9.7e-40
Identities = 80/224 (35%), Positives = 126/224 (56%)
Query: 24 GLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQS 83
GL S + D ++ +L +E P +Q QA+P+I+SGR + A TG+GKT+ ++ P++ H++
Sbjct: 535 GLTSKILDTMK-KLNYEKPMPIQTQALPIIMSGRDCIGVAKTGSGKTLGFVLPMLRHIKD 593
Query: 84 YSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHW-IVPGYVMGGENRSKEKARLR 142
P ++ G LV+ PTREL Q++ + K VP Y GG +++ + L+
Sbjct: 594 QPP-VEAGDGPIGLVMAPTRELVQQIHSDIRKFSKPLGIRCVPVY--GGSGVAQQISELK 650
Query: 143 KGISILVATPGRLLDHLKHTSSFLHTNLR---WIIFDEADRILELGFGKEIEEILDILGS 199
+G I+V TPGR++D L TSS TNLR +++ DEADR+ ++GF +I I+
Sbjct: 651 RGTEIVVCTPGRMIDILC-TSSGKITNLRRVTFLVMDEADRMFDMGFEPQITRII----- 704
Query: 200 RNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLI 243
+NI +RQ +L SAT +V LA+ L PV I
Sbjct: 705 QNI----------RPERQTVLFSATFPRQVETLARKVLNKPVEI 738
Score = 198 (74.8 bits), Expect = 9.7e-40, Sum P(2) = 9.7e-40
Identities = 44/109 (40%), Positives = 64/109 (58%)
Query: 366 LHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRVG 425
LHG Q DR +T FK + LL++T VAARGLD +++ ++ +D+ +YVHRVG
Sbjct: 806 LHGGKDQTDRESTISDFKNDVCNLLIATSVAARGLDVKELELVVNFDAPNHYEDYVHRVG 865
Query: 426 RTARLGERGDSLLFLQPVEMDYLQDLEKHGVSLTEYPL---LKVL-DSF 470
RT R G +G ++ F+ + Y DL K + L+E P+ LK L D F
Sbjct: 866 RTGRAGRKGCAVTFISEDDAKYAPDLVK-ALELSEQPVPDDLKALADGF 913
>UNIPROTKB|F1MW45 [details] [associations]
symbol:DDX55 "ATP-dependent RNA helicase DDX55"
species:9913 "Bos taurus" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313
Pfam:PF13959 IPI:IPI00726158 UniGene:Bt.74315
GeneTree:ENSGT00550000074969 OMA:CACVEYW EMBL:DAAA02045235
Ensembl:ENSBTAT00000009556 Uniprot:F1MW45
Length = 601
Score = 278 (102.9 bits), Expect = 1.2e-39, Sum P(2) = 1.2e-39
Identities = 77/230 (33%), Positives = 118/230 (51%)
Query: 25 LHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSY 84
LH + LRE LGF T VQ+ IP+ + + V A TG+GKT+A++ PI+ L
Sbjct: 16 LHPQVLSVLRE-LGFPYMTPVQSATIPLFMKNKDVAAEAVTGSGKTLAFVIPIVEILLRR 74
Query: 85 SPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRK- 143
+ +S A+++ PTREL +Q+ E+L F +GG N ++ AR ++
Sbjct: 75 EEKFKKSQ-VGAIIITPTRELAVQIEEVLSHFTKPFPQFSQILWIGGRNPGEDVARFKEL 133
Query: 144 GISILVATPGRLLDHLKHTSSFLHT-----NLRWIIFDEADRILELGFGKEIEEILDILG 198
G +I+VATPGRL D + + L +L ++ DEADR+L++GF I IL+ L
Sbjct: 134 GGNIIVATPGRLEDMFRRKAEGLDLASCVRSLEVLVLDEADRLLDMGFETSINTILEFLP 193
Query: 199 SRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEK 248
+ R+ L SAT ++V +L + L PV I + EK
Sbjct: 194 KQ---------------RRTGLFSATQTQEVENLVRAGLRNPVRISVKEK 228
Score = 217 (81.4 bits), Expect = 1.2e-39, Sum P(2) = 1.2e-39
Identities = 51/142 (35%), Positives = 76/142 (53%)
Query: 310 LKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGN 369
L H +K +VFFSTC V+++ L +K + + C +HG
Sbjct: 258 LVHFLRNHKQEKHLVFFSTCACVEYYGKALETL-----------VKGVKIMC----IHGK 302
Query: 370 MKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRVGRTAR 429
MK + R F F+ + +L+ TDV ARG+D P+V ++QYD A+ +VHR GRTAR
Sbjct: 303 MKYK-RNKIFMEFRKLQSGILVCTDVMARGIDIPEVNWVLQYDPPSNASAFVHRCGRTAR 361
Query: 430 LGERGDSLLFLQPVEMDYLQDL 451
+G G +L+FL P+E Y+ L
Sbjct: 362 IGHGGSALVFLLPMEESYISFL 383
>POMBASE|SPCC63.11 [details] [associations]
symbol:prp28 "U5 snRNP-associated protein Prp28
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0000354
"cis assembly of pre-catalytic spliceosome" evidence=ISS]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005681 "spliceosomal complex" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 PomBase:SPCC63.11
GO:GO:0005524 GO:GO:0005737 EMBL:CU329672 GenomeReviews:CU329672_GR
GO:GO:0005681 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0000354 KO:K12858 HOGENOM:HOG000268796
OMA:PIRNWKE OrthoDB:EOG4KPXK0 PIR:T41512 RefSeq:NP_587984.1
ProteinModelPortal:Q9Y7T7 STRING:Q9Y7T7 EnsemblFungi:SPCC63.11.1
GeneID:2538728 KEGG:spo:SPCC63.11 NextBio:20799913 Uniprot:Q9Y7T7
Length = 662
Score = 312 (114.9 bits), Expect = 1.2e-39, Sum P(2) = 1.2e-39
Identities = 82/256 (32%), Positives = 139/256 (54%)
Query: 19 SFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPII 78
++ GL S + L+ ++ ++ P+ +Q AIPV+L + ++ A TG+GKT A++ P+I
Sbjct: 250 NWEEAGLPSEMLKVLK-KVNYKEPSSIQRAAIPVLLQRKDLIGIAETGSGKTAAFIIPLI 308
Query: 79 NHLQSYSPRIDRSS--GTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSK 136
+ P + + G +A+VL PTREL Q+ +K + V+GG +
Sbjct: 309 IAISKLPPLTESNMHLGPYAVVLAPTRELAQQIQVEGNKFAEPLGFRCVS-VVGGHAFEE 367
Query: 137 EKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDI 196
+ ++ +G I+VATPGRLLD L+ F+ + +++ DEADR+L++GF ++ +IL
Sbjct: 368 QSFQMSQGAHIVVATPGRLLDCLERRL-FVLSQCTYVVMDEADRMLDMGFEDDVNKILSS 426
Query: 197 LGSRNI----GSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLPE 252
L S N GSI S+ +RQ ++ SATL +V +LAK L PV++ +
Sbjct: 427 LPSSNASEKDGSILATANSSSSRRQTIMFSATLPPRVANLAKSYLIEPVMLTIGNIGQAV 486
Query: 253 DKSHVRFGSLESDVKE 268
D+ R + D K+
Sbjct: 487 DRVEQRVEMISDDSKK 502
Score = 180 (68.4 bits), Expect = 1.2e-39, Sum P(2) = 1.2e-39
Identities = 32/86 (37%), Positives = 49/86 (56%)
Query: 366 LHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRVG 425
LHG+ QE R + + +L++TD+A RG+D P V ++ Y+ A +Y HR+G
Sbjct: 546 LHGSKSQEQRERAIEQLRNKTADILVATDIAGRGIDIPNVSLVLNYNMAKSIEDYTHRIG 605
Query: 426 RTARLGERGDSLLFLQPVEMDYLQDL 451
RT R G+ G ++ FL P + D DL
Sbjct: 606 RTGRAGKSGTAITFLGPEDTDVYYDL 631
>UNIPROTKB|F1RFL5 [details] [associations]
symbol:DDX55 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
CTD:57696 KO:K14809 GeneTree:ENSGT00550000074969 OMA:CACVEYW
EMBL:CU468658 RefSeq:XP_001927747.2 UniGene:Ssc.4554
UniGene:Ssc.95961 Ensembl:ENSSSCT00000010713 GeneID:100157342
KEGG:ssc:100157342 Uniprot:F1RFL5
Length = 600
Score = 278 (102.9 bits), Expect = 1.8e-39, Sum P(2) = 1.8e-39
Identities = 77/230 (33%), Positives = 120/230 (52%)
Query: 25 LHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSY 84
LH + D L+E LGF T VQ+ IP+ + + V A TG+GKT+A++ PI+ L
Sbjct: 16 LHPRVLDVLQE-LGFPYMTPVQSATIPLFMKNKDVAAEAVTGSGKTLAFVIPILEILLRR 74
Query: 85 SPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRK- 143
++ +S A+++ PTREL +Q+ E+L F +GG N ++ AR ++
Sbjct: 75 EEKLKKSQ-VGAIIITPTRELAVQIDEVLSHFTKPFPQFSQILWIGGRNPGEDVARFKEH 133
Query: 144 GISILVATPGRLLDHLKHTSSFLHT-----NLRWIIFDEADRILELGFGKEIEEILDILG 198
G +I+VATPGRL D + + L +L ++ DEADR+L++GF I IL+ L
Sbjct: 134 GGNIIVATPGRLEDMFRRKAEGLDLASCVKSLDVLVLDEADRLLDMGFEASINTILEFLP 193
Query: 199 SRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEK 248
+ R+ L SAT ++V +L + L PV I + EK
Sbjct: 194 KQ---------------RRTGLFSATQTQEVENLVRAGLRNPVRISVKEK 228
Score = 215 (80.7 bits), Expect = 1.8e-39, Sum P(2) = 1.8e-39
Identities = 50/142 (35%), Positives = 76/142 (53%)
Query: 310 LKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGN 369
L H +K +VFFSTC V+++ L ++ + + C +HG
Sbjct: 258 LVHFLRNHKQEKHLVFFSTCACVEYYGKALEAL-----------VRSVKIMC----IHGK 302
Query: 370 MKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRVGRTAR 429
MK + R F F+ + +L+ TDV ARG+D P+V ++QYD A+ +VHR GRTAR
Sbjct: 303 MKYK-RNKIFMEFRQLQSGILVCTDVMARGIDIPEVNWVLQYDPPSSASAFVHRCGRTAR 361
Query: 430 LGERGDSLLFLQPVEMDYLQDL 451
+G G +L+FL P+E Y+ L
Sbjct: 362 IGHGGSALVFLLPMEESYVNFL 383
>UNIPROTKB|Q47Z59 [details] [associations]
symbol:CPS_3215 "Putative ATP-dependent RNA helicase SrmB"
species:167879 "Colwellia psychrerythraea 34H" [GO:0042254
"ribosome biogenesis" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0042254 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_269911.1 ProteinModelPortal:Q47Z59
STRING:Q47Z59 GeneID:3520324 KEGG:cps:CPS_3215 PATRIC:21469413
OMA:PKFIVAT ProtClustDB:CLSK869483
BioCyc:CPSY167879:GI48-3264-MONOMER Uniprot:Q47Z59
Length = 448
Score = 294 (108.6 bits), Expect = 2.1e-39, Sum P(3) = 2.1e-39
Identities = 68/175 (38%), Positives = 98/175 (56%)
Query: 20 FSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIIN 79
FS GL S L + E +GF PT++Q QAIP ++G ++ ++ TG+GKT+A++ P +
Sbjct: 3 FSDFGLDSALMSTI-EHMGFNEPTQIQQQAIPAAMAGHDLIASSKTGSGKTLAFIIPALQ 61
Query: 80 HLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKA 139
L R ++L PTREL QV+ L + ++GGEN + +
Sbjct: 62 RLSKNRALSKRDPRV--VILTPTRELAKQVFSQLRLFTANTQYKAV-LILGGENFNDQVK 118
Query: 140 RLRKGISILVATPGRLLDHLKHTSSFLHTN-LRWIIFDEADRILELGFGKEIEEI 193
L+K +VATPGRL DHL T H N L +I DEADR+L+LGF KE+ +I
Sbjct: 119 VLQKEPEFIVATPGRLADHL--TQGHFHLNGLELLILDEADRMLDLGFSKELTQI 171
Score = 195 (73.7 bits), Expect = 1.9e-26, Sum P(3) = 1.9e-26
Identities = 69/187 (36%), Positives = 90/187 (48%)
Query: 63 AATGTGKTVAYLAPIINHLQSYSP-RIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFH 121
A++ TG LA II LQ S R ++L PTREL QV+ L
Sbjct: 43 ASSKTGSGKT-LAFIIPALQRLSKNRALSKRDPRVVILTPTRELAKQVFSQLRLFTANTQ 101
Query: 122 WIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTN-LRWIIFDEADR 180
+ ++GGEN + + L+K +VATPGRL DHL T H N L +I DEADR
Sbjct: 102 YKAV-LILGGENFNDQVKVLQKEPEFIVATPGRLADHL--TQGHFHLNGLELLILDEADR 158
Query: 181 ILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNE-KVNHLAKISLET 239
+L+LGF KE+ +I R KRQ LL SATL+ +VN A L
Sbjct: 159 MLDLGFSKELTQINKAADHR--------------KRQTLLFSATLDHAQVNEFATELLTK 204
Query: 240 PVLIGLD 246
P I ++
Sbjct: 205 PKRIAIN 211
Score = 160 (61.4 bits), Expect = 2.1e-39, Sum P(3) = 2.1e-39
Identities = 39/119 (32%), Positives = 65/119 (54%)
Query: 366 LHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRVG 425
L G + Q R +F + +L++TD+A+RGLD V +I +D E+VHR+G
Sbjct: 276 LSGELNQGQRNQIMESFSKGQHKILVTTDLASRGLDLINVSHVINFDMPKHTEEFVHRIG 335
Query: 426 RTARLGERGDSLLFLQPVEMDYLQDLE---KHGVSLTEYPLLKVLDSFPLYGQKPRVKK 481
RT R G +GD++ + P + L+++E + +S T+ +KV F G KP+ +K
Sbjct: 336 RTGRAGTKGDAISLVGPNDWLSLKNVEAFLQQKISFTKVEGIKV--KFK--GLKPKKEK 390
Score = 56 (24.8 bits), Expect = 2.1e-39, Sum P(3) = 2.1e-39
Identities = 12/34 (35%), Positives = 21/34 (61%)
Query: 308 SILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSE 341
++L+H TE SQ++++F +T D LL+E
Sbjct: 235 ALLQHFLVTEKSQQIIIFTATRSDTDRLAKLLTE 268
>TIGR_CMR|CPS_3215 [details] [associations]
symbol:CPS_3215 "putative ATP-dependent RNA helicase SrmB"
species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0008186
"RNA-dependent ATPase activity" evidence=ISS] [GO:0042254 "ribosome
biogenesis" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
GO:GO:0042254 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_269911.1 ProteinModelPortal:Q47Z59
STRING:Q47Z59 GeneID:3520324 KEGG:cps:CPS_3215 PATRIC:21469413
OMA:PKFIVAT ProtClustDB:CLSK869483
BioCyc:CPSY167879:GI48-3264-MONOMER Uniprot:Q47Z59
Length = 448
Score = 294 (108.6 bits), Expect = 2.1e-39, Sum P(3) = 2.1e-39
Identities = 68/175 (38%), Positives = 98/175 (56%)
Query: 20 FSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIIN 79
FS GL S L + E +GF PT++Q QAIP ++G ++ ++ TG+GKT+A++ P +
Sbjct: 3 FSDFGLDSALMSTI-EHMGFNEPTQIQQQAIPAAMAGHDLIASSKTGSGKTLAFIIPALQ 61
Query: 80 HLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKA 139
L R ++L PTREL QV+ L + ++GGEN + +
Sbjct: 62 RLSKNRALSKRDPRV--VILTPTRELAKQVFSQLRLFTANTQYKAV-LILGGENFNDQVK 118
Query: 140 RLRKGISILVATPGRLLDHLKHTSSFLHTN-LRWIIFDEADRILELGFGKEIEEI 193
L+K +VATPGRL DHL T H N L +I DEADR+L+LGF KE+ +I
Sbjct: 119 VLQKEPEFIVATPGRLADHL--TQGHFHLNGLELLILDEADRMLDLGFSKELTQI 171
Score = 195 (73.7 bits), Expect = 1.9e-26, Sum P(3) = 1.9e-26
Identities = 69/187 (36%), Positives = 90/187 (48%)
Query: 63 AATGTGKTVAYLAPIINHLQSYSP-RIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFH 121
A++ TG LA II LQ S R ++L PTREL QV+ L
Sbjct: 43 ASSKTGSGKT-LAFIIPALQRLSKNRALSKRDPRVVILTPTRELAKQVFSQLRLFTANTQ 101
Query: 122 WIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTN-LRWIIFDEADR 180
+ ++GGEN + + L+K +VATPGRL DHL T H N L +I DEADR
Sbjct: 102 YKAV-LILGGENFNDQVKVLQKEPEFIVATPGRLADHL--TQGHFHLNGLELLILDEADR 158
Query: 181 ILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNE-KVNHLAKISLET 239
+L+LGF KE+ +I R KRQ LL SATL+ +VN A L
Sbjct: 159 MLDLGFSKELTQINKAADHR--------------KRQTLLFSATLDHAQVNEFATELLTK 204
Query: 240 PVLIGLD 246
P I ++
Sbjct: 205 PKRIAIN 211
Score = 160 (61.4 bits), Expect = 2.1e-39, Sum P(3) = 2.1e-39
Identities = 39/119 (32%), Positives = 65/119 (54%)
Query: 366 LHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRVG 425
L G + Q R +F + +L++TD+A+RGLD V +I +D E+VHR+G
Sbjct: 276 LSGELNQGQRNQIMESFSKGQHKILVTTDLASRGLDLINVSHVINFDMPKHTEEFVHRIG 335
Query: 426 RTARLGERGDSLLFLQPVEMDYLQDLE---KHGVSLTEYPLLKVLDSFPLYGQKPRVKK 481
RT R G +GD++ + P + L+++E + +S T+ +KV F G KP+ +K
Sbjct: 336 RTGRAGTKGDAISLVGPNDWLSLKNVEAFLQQKISFTKVEGIKV--KFK--GLKPKKEK 390
Score = 56 (24.8 bits), Expect = 2.1e-39, Sum P(3) = 2.1e-39
Identities = 12/34 (35%), Positives = 21/34 (61%)
Query: 308 SILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSE 341
++L+H TE SQ++++F +T D LL+E
Sbjct: 235 ALLQHFLVTEKSQQIIIFTATRSDTDRLAKLLTE 268
>MGI|MGI:1915098 [details] [associations]
symbol:Ddx55 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 55"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 MGI:MGI:1915098 GO:GO:0005524
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
InterPro:IPR025313 Pfam:PF13959 HSSP:P26196 CTD:57696
HOGENOM:HOG000268803 HOVERGEN:HBG107796 KO:K14809 OrthoDB:EOG4WH8KN
GeneTree:ENSGT00550000074969 OMA:CACVEYW EMBL:AK129402
EMBL:AK033741 EMBL:AK154422 EMBL:BC117786 EMBL:BC117787
IPI:IPI00453808 RefSeq:NP_080685.2 UniGene:Mm.281601
ProteinModelPortal:Q6ZPL9 SMR:Q6ZPL9 IntAct:Q6ZPL9 STRING:Q6ZPL9
PRIDE:Q6ZPL9 Ensembl:ENSMUST00000071057 GeneID:67848 KEGG:mmu:67848
UCSC:uc008zqc.2 InParanoid:Q6ZPL9 NextBio:325707 Bgee:Q6ZPL9
CleanEx:MM_DDX55 Genevestigator:Q6ZPL9
GermOnline:ENSMUSG00000029389 Uniprot:Q6ZPL9
Length = 600
Score = 272 (100.8 bits), Expect = 2.2e-39, Sum P(2) = 2.2e-39
Identities = 76/230 (33%), Positives = 118/230 (51%)
Query: 25 LHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSY 84
LH + LRE LGF T VQ+ IP+ + + V A TG+GKT+A++ PI+ L
Sbjct: 16 LHPRVLGALRE-LGFPHMTPVQSATIPLFMKNKDVAAEAVTGSGKTLAFVIPILEILLRR 74
Query: 85 SPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRK- 143
++ ++ A+V+ PTREL +Q+ E+L F +GG N ++ R ++
Sbjct: 75 EEKLKKNQ-VGAIVITPTRELAIQIDEVLSHFTKHFPQFSQILWIGGRNPGEDVERFKQH 133
Query: 144 GISILVATPGRLLDHLKHTSSFLHT-----NLRWIIFDEADRILELGFGKEIEEILDILG 198
G +I+VATPGRL D + + L +L ++ DEADR+L++GF I IL+ L
Sbjct: 134 GGNIIVATPGRLEDMFRRKAEGLDLASCVKSLDVLVLDEADRLLDMGFEASINTILEFLP 193
Query: 199 SRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEK 248
+ R+ L SAT ++V +L + L PV I + EK
Sbjct: 194 KQ---------------RRTGLFSATQTQEVENLVRAGLRNPVRISVKEK 228
Score = 221 (82.9 bits), Expect = 2.2e-39, Sum P(2) = 2.2e-39
Identities = 52/142 (36%), Positives = 78/142 (54%)
Query: 310 LKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGN 369
L H + +K +VFFSTC V+++ L LK++ + C +HG
Sbjct: 258 LVHFLRSRQQEKHLVFFSTCACVEYYGKALEAL-----------LKKVKILC----IHGK 302
Query: 370 MKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRVGRTAR 429
MK + R F F+ + +L+ TDV ARG+D P+V ++QYD A+ +VHR GRTAR
Sbjct: 303 MKYK-RNKIFMEFRKLQSGILVCTDVMARGIDIPEVNWVLQYDPPSNASAFVHRCGRTAR 361
Query: 430 LGERGDSLLFLQPVEMDYLQDL 451
+G G +L+FL P+E Y+ L
Sbjct: 362 IGHGGSALVFLLPMEEAYINFL 383
>UNIPROTKB|Q9KMW4 [details] [associations]
symbol:VC_A0204 "ATP-dependent RNA helicase RhlE"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
[GO:0008152 "metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE003853 GenomeReviews:AE003853_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 KO:K11927 PIR:E82488
RefSeq:NP_232603.1 ProteinModelPortal:Q9KMW4 DNASU:2612352
GeneID:2612352 KEGG:vch:VCA0204 PATRIC:20084977 OMA:AISFCDA
ProtClustDB:CLSK869561 Uniprot:Q9KMW4
Length = 451
Score = 303 (111.7 bits), Expect = 5.5e-39, Sum P(2) = 5.5e-39
Identities = 69/179 (38%), Positives = 111/179 (62%)
Query: 20 FSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIIN 79
F+SLGL + + + E+ G+ P+ +Q QAIP +L+G+ V+ A TGTGKT + PI+
Sbjct: 3 FTSLGLSAPILKAIEEK-GYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPILE 61
Query: 80 HLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHW-IVPGYVMGGENRSKEK 138
L + P++ R++ AL+L PTREL Q+ + + +L+ H + V GG + +
Sbjct: 62 -LLAKGPKV-RANQVRALILTPTRELAAQIQD--NVMLYGRHLPLKSAVVFGGVKINPQM 117
Query: 139 ARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDIL 197
R+ KG ILVATPGRL+D L + ++ L ++ DEADR+L++GF ++I +IL +L
Sbjct: 118 QRMCKGADILVATPGRLMD-LYNQNAVKFDQLEILVLDEADRMLDMGFIRDIHKILKLL 175
Score = 169 (64.5 bits), Expect = 5.5e-39, Sum P(2) = 5.5e-39
Identities = 40/116 (34%), Positives = 63/116 (54%)
Query: 366 LHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRVG 425
+HGN Q R FK + +L++TD+AARG+D P++ ++ ++ A +YVHR+G
Sbjct: 273 IHGNKSQGARTRALADFKAGEVRILVATDIAARGIDIPQLPQVVNFELPKIAEDYVHRIG 332
Query: 426 RTARLGERGDSLLFLQPVEMDYLQDLEKHGVSLTEYPLLKV-LDSFPLYGQKPRVK 480
RT R GE G ++ + +E L +E+ LT+ L +V L F Q P K
Sbjct: 333 RTGRAGEVGKAISLVSAIEAPELFAIER----LTQALLPRVNLAGFEPTNQLPESK 384
Score = 165 (63.1 bits), Expect = 3.5e-22, Sum P(2) = 3.5e-22
Identities = 45/118 (38%), Positives = 66/118 (55%)
Query: 128 VMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFG 187
V GG + + R+ KG ILVATPGRL+D L + ++ L ++ DEADR+L++GF
Sbjct: 107 VFGGVKINPQMQRMCKGADILVATPGRLMD-LYNQNAVKFDQLEILVLDEADRMLDMGFI 165
Query: 188 KEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGL 245
++I +IL +L KRQNLL SAT + ++ LAK + PV I +
Sbjct: 166 RDIHKILKLLPE---------------KRQNLLFSATFSTEIRELAKGLVNNPVEISV 208
>TIGR_CMR|VC_A0204 [details] [associations]
symbol:VC_A0204 "ATP-dependent RNA helicase RhlE"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE003853 GenomeReviews:AE003853_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 KO:K11927 PIR:E82488
RefSeq:NP_232603.1 ProteinModelPortal:Q9KMW4 DNASU:2612352
GeneID:2612352 KEGG:vch:VCA0204 PATRIC:20084977 OMA:AISFCDA
ProtClustDB:CLSK869561 Uniprot:Q9KMW4
Length = 451
Score = 303 (111.7 bits), Expect = 5.5e-39, Sum P(2) = 5.5e-39
Identities = 69/179 (38%), Positives = 111/179 (62%)
Query: 20 FSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIIN 79
F+SLGL + + + E+ G+ P+ +Q QAIP +L+G+ V+ A TGTGKT + PI+
Sbjct: 3 FTSLGLSAPILKAIEEK-GYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPILE 61
Query: 80 HLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHW-IVPGYVMGGENRSKEK 138
L + P++ R++ AL+L PTREL Q+ + + +L+ H + V GG + +
Sbjct: 62 -LLAKGPKV-RANQVRALILTPTRELAAQIQD--NVMLYGRHLPLKSAVVFGGVKINPQM 117
Query: 139 ARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDIL 197
R+ KG ILVATPGRL+D L + ++ L ++ DEADR+L++GF ++I +IL +L
Sbjct: 118 QRMCKGADILVATPGRLMD-LYNQNAVKFDQLEILVLDEADRMLDMGFIRDIHKILKLL 175
Score = 169 (64.5 bits), Expect = 5.5e-39, Sum P(2) = 5.5e-39
Identities = 40/116 (34%), Positives = 63/116 (54%)
Query: 366 LHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRVG 425
+HGN Q R FK + +L++TD+AARG+D P++ ++ ++ A +YVHR+G
Sbjct: 273 IHGNKSQGARTRALADFKAGEVRILVATDIAARGIDIPQLPQVVNFELPKIAEDYVHRIG 332
Query: 426 RTARLGERGDSLLFLQPVEMDYLQDLEKHGVSLTEYPLLKV-LDSFPLYGQKPRVK 480
RT R GE G ++ + +E L +E+ LT+ L +V L F Q P K
Sbjct: 333 RTGRAGEVGKAISLVSAIEAPELFAIER----LTQALLPRVNLAGFEPTNQLPESK 384
Score = 165 (63.1 bits), Expect = 3.5e-22, Sum P(2) = 3.5e-22
Identities = 45/118 (38%), Positives = 66/118 (55%)
Query: 128 VMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFG 187
V GG + + R+ KG ILVATPGRL+D L + ++ L ++ DEADR+L++GF
Sbjct: 107 VFGGVKINPQMQRMCKGADILVATPGRLMD-LYNQNAVKFDQLEILVLDEADRMLDMGFI 165
Query: 188 KEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGL 245
++I +IL +L KRQNLL SAT + ++ LAK + PV I +
Sbjct: 166 RDIHKILKLLPE---------------KRQNLLFSATFSTEIRELAKGLVNNPVEISV 208
>UNIPROTKB|Q2NL08 [details] [associations]
symbol:DDX55 "ATP-dependent RNA helicase DDX55"
species:9913 "Bos taurus" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
InterPro:IPR025313 Pfam:PF13959 EMBL:BC111255 IPI:IPI00726158
RefSeq:NP_001039472.1 UniGene:Bt.74315 PRIDE:Q2NL08 GeneID:508581
KEGG:bta:508581 CTD:57696 HOGENOM:HOG000268803 HOVERGEN:HBG107796
InParanoid:Q2NL08 KO:K14809 OrthoDB:EOG4WH8KN NextBio:20868584
Uniprot:Q2NL08
Length = 601
Score = 272 (100.8 bits), Expect = 5.9e-39, Sum P(2) = 5.9e-39
Identities = 77/230 (33%), Positives = 117/230 (50%)
Query: 25 LHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSY 84
LH + LRE LGF T VQ+ IP+ + + V A TG+GKT+A++ PI L
Sbjct: 16 LHPKVLSVLRE-LGFPYMTPVQSATIPLFMKNKDVAAEAVTGSGKTLAFVIPIEEILLRR 74
Query: 85 SPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRK- 143
+ +S A+++ PTREL +Q+ E+L F +GG N ++ AR ++
Sbjct: 75 EEKFKKSQ-VGAIIITPTRELAVQIEEVLSHFTKPFPQFSQILWIGGRNPGEDVARFKEL 133
Query: 144 GISILVATPGRLLDHLKHTSSFLHT-----NLRWIIFDEADRILELGFGKEIEEILDILG 198
G +I+VATPGRL D + + L +L ++ DEADR+L++GF I IL+ L
Sbjct: 134 GGNIIVATPGRLEDMFRRKAEGLDLASCVRSLEVLVLDEADRLLDMGFETSINTILEFLP 193
Query: 199 SRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEK 248
+ R+ L SAT ++V +L + L PV I + EK
Sbjct: 194 KQ---------------RRTGLFSATQTQEVENLVRAGLRNPVRISVKEK 228
Score = 217 (81.4 bits), Expect = 5.9e-39, Sum P(2) = 5.9e-39
Identities = 51/142 (35%), Positives = 76/142 (53%)
Query: 310 LKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGN 369
L H +K +VFFSTC V+++ L +K + + C +HG
Sbjct: 258 LVHFLRNHKQEKHLVFFSTCACVEYYGKALETL-----------VKGVKIMC----IHGK 302
Query: 370 MKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRVGRTAR 429
MK + R F F+ + +L+ TDV ARG+D P+V ++QYD A+ +VHR GRTAR
Sbjct: 303 MKYK-RNKIFMEFRKLQSGILVCTDVMARGIDIPEVNWVLQYDPPSNASAFVHRCGRTAR 361
Query: 430 LGERGDSLLFLQPVEMDYLQDL 451
+G G +L+FL P+E Y+ L
Sbjct: 362 IGHGGSALVFLLPMEESYISFL 383
>UNIPROTKB|Q8NHQ9 [details] [associations]
symbol:DDX55 "ATP-dependent RNA helicase DDX55"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
InterPro:IPR025313 Pfam:PF13959 HSSP:P26196 CTD:57696
HOGENOM:HOG000268803 HOVERGEN:HBG107796 KO:K14809 OrthoDB:EOG4WH8KN
OMA:CACVEYW EMBL:AC055713 EMBL:AC117503 EMBL:BC030020 EMBL:AL833756
EMBL:AB046815 IPI:IPI00185361 RefSeq:NP_065987.1 UniGene:Hs.286173
ProteinModelPortal:Q8NHQ9 SMR:Q8NHQ9 STRING:Q8NHQ9
PhosphoSite:Q8NHQ9 DMDM:296439376 PaxDb:Q8NHQ9 PRIDE:Q8NHQ9
Ensembl:ENST00000238146 GeneID:57696 KEGG:hsa:57696 UCSC:uc001ufi.3
GeneCards:GC12P124086 HGNC:HGNC:20085 neXtProt:NX_Q8NHQ9
PharmGKB:PA134984021 InParanoid:Q8NHQ9 ChiTaRS:DDX55
GenomeRNAi:57696 NextBio:64547 ArrayExpress:Q8NHQ9 Bgee:Q8NHQ9
CleanEx:HS_DDX55 Genevestigator:Q8NHQ9 GermOnline:ENSG00000111364
Uniprot:Q8NHQ9
Length = 600
Score = 271 (100.5 bits), Expect = 6.0e-39, Sum P(2) = 6.0e-39
Identities = 75/230 (32%), Positives = 118/230 (51%)
Query: 25 LHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSY 84
LH + LRE LGF T VQ+ IP+ + + V A TG+GKT+A++ PI+ L
Sbjct: 16 LHPQVLGALRE-LGFPYMTPVQSATIPLFMRNKDVAAEAVTGSGKTLAFVIPILEILLRR 74
Query: 85 SPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRK- 143
++ +S A+++ PTREL +Q+ E+L F +GG N ++ R ++
Sbjct: 75 EEKLKKSQ-VGAIIITPTRELAIQIDEVLSHFTKHFPEFSQILWIGGRNPGEDVERFKQQ 133
Query: 144 GISILVATPGRLLDHLKHTSSFLHT-----NLRWIIFDEADRILELGFGKEIEEILDILG 198
G +I+VATPGRL D + + L +L ++ DEADR+L++GF I IL+ L
Sbjct: 134 GGNIIVATPGRLEDMFRRKAEGLDLASCVRSLDVLVLDEADRLLDMGFEASINTILEFLP 193
Query: 199 SRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEK 248
+ R+ L SAT ++V +L + L PV + + EK
Sbjct: 194 KQ---------------RRTGLFSATQTQEVENLVRAGLRNPVRVSVKEK 228
Score = 218 (81.8 bits), Expect = 6.0e-39, Sum P(2) = 6.0e-39
Identities = 51/142 (35%), Positives = 78/142 (54%)
Query: 310 LKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGN 369
L H +K +VFFSTC V+++ L ++ +K + + C +HG
Sbjct: 258 LVHFLRNHKQEKHLVFFSTCACVEYYGKAL-----------EVLVKGVKIMC----IHGK 302
Query: 370 MKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRVGRTAR 429
MK + R F F+ + +L+ TDV ARG+D P+V ++QYD A+ +VHR GRTAR
Sbjct: 303 MKYK-RNKIFMEFRKLQSGILVCTDVMARGIDIPEVNWVLQYDPPSNASAFVHRCGRTAR 361
Query: 430 LGERGDSLLFLQPVEMDYLQDL 451
+G G +L+FL P+E Y+ L
Sbjct: 362 IGHGGSALVFLLPMEESYINFL 383
>UNIPROTKB|I3LQ10 [details] [associations]
symbol:LOC100626268 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00550000074997 Ensembl:ENSSSCT00000028964 OMA:RYLVALC
Uniprot:I3LQ10
Length = 684
Score = 320 (117.7 bits), Expect = 6.9e-39, Sum P(2) = 6.9e-39
Identities = 85/239 (35%), Positives = 131/239 (54%)
Query: 9 ETVKEIFASCSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTG 68
E + + SF + L L + +GF+ PT +Q IPV L G+ + AATGTG
Sbjct: 202 EDASQYDENLSFQDMNLSRPLLKAITV-MGFKQPTPIQKACIPVGLLGKDICACAATGTG 260
Query: 69 KTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVP--- 125
KT A+ P++ L Y PR ++ T LVLVPTREL +QV+ + +L ++
Sbjct: 261 KTAAFALPVLERL-IYKPR--QAPVTRVLVLVPTRELGIQVHSVTKQLAQSSLCVITTIS 317
Query: 126 GYVMGGENRSKEKARLRKGI-SILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILEL 184
G GG + ++A LR IL+ATPGRL+DHL + SF +++ +I DEADR+L+
Sbjct: 318 GLFAGGLDVKSQEAALRAAXPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDE 377
Query: 185 GFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLI 243
F ++++EI+ + ++ RQ +L SAT+ ++V LA +SL+ PV I
Sbjct: 378 YFEEQMKEII---------------RMCSLHRQTMLFSATMTDEVKDLASVSLKNPVRI 421
Score = 164 (62.8 bits), Expect = 6.9e-39, Sum P(2) = 6.9e-39
Identities = 36/79 (45%), Positives = 46/79 (58%)
Query: 366 LHGNMKQEDRRT-TFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRV 424
LHGN+ Q R FK E+ +L++TDVAARGLD VK +I + YVHRV
Sbjct: 491 LHGNLSQTQRXLEALWRFKDEQIDILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHRV 550
Query: 425 GRTARLGERGDSLLFLQPV 443
GRTAR G G S+ L+ +
Sbjct: 551 GRTARAGRAGRSVSLLKEI 569
Score = 46 (21.3 bits), Expect = 1.2e-08, Sum P(2) = 1.2e-08
Identities = 18/49 (36%), Positives = 24/49 (48%)
Query: 183 ELGFGKEIEEILDILGSRNIGSIGEGNEVS-NVKRQNLLLSA--TLNEK 228
E+ G E EE D+ G GS GE +E + +N+L A TL K
Sbjct: 138 EVKEGSEPEEQEDLEGKDEEGSEGEESETDYSSADENILTKAVDTLRVK 186
>UNIPROTKB|F1S7D9 [details] [associations]
symbol:DDX49 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 KO:K14778 OMA:EVRTVEQ
GeneTree:ENSGT00670000098028 CTD:54555 EMBL:CU640483
RefSeq:XP_003123587.1 UniGene:Ssc.79767 Ensembl:ENSSSCT00000025399
GeneID:100526038 KEGG:ssc:100526038 Uniprot:F1S7D9
Length = 483
Score = 298 (110.0 bits), Expect = 9.3e-39, Sum P(2) = 9.3e-39
Identities = 83/224 (37%), Positives = 121/224 (54%)
Query: 20 FSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIIN 79
F+ LGL S L +Q R+ LG + PT VQ IP IL GR L A TG+GKT A++ PI+
Sbjct: 4 FAELGLSSWLVEQCRQ-LGLKQPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLPILQ 62
Query: 80 HLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKA 139
L S P G F LVL PTREL Q+ E ++L + + ++GG + +
Sbjct: 63 KL-SEDPY-----GIFCLVLTPTRELAYQIAEQF-RVLGKPLGLKDCIIVGGMDMVAQAL 115
Query: 140 RLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELG---FGKEIEEILDI 196
L + +++ATPGRL DHL+ +++F +R+++ DEADR+LE G F ++E IL
Sbjct: 116 ELSRKPHVVIATPGRLADHLRSSNTFSIKKIRFLVMDEADRLLEQGCTDFTVDLEAILAA 175
Query: 197 LGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETP 240
+ +R RQ LL SATL + + L ++ P
Sbjct: 176 VPAR---------------RQTLLFSATLTDTLRELQSLATNQP 204
Score = 178 (67.7 bits), Expect = 9.3e-39, Sum P(2) = 9.3e-39
Identities = 34/91 (37%), Positives = 56/91 (61%)
Query: 363 TFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVH 422
T LH MKQ++R FK+ +L++TDVA+RGLD P V+ +I +++ G Y+H
Sbjct: 275 TVALHSMMKQKERFAALAKFKSSIYRILIATDVASRGLDIPTVQVVINHNTPGLPKIYIH 334
Query: 423 RVGRTARLGERGDSLLFLQPVEMDYLQDLEK 453
RVGRTAR G +G ++ + ++ + +E+
Sbjct: 335 RVGRTARAGRQGQAITLVTQYDIHLVHAIEE 365
Score = 72 (30.4 bits), Expect = 1.2e-27, Sum P(2) = 1.2e-27
Identities = 27/122 (22%), Positives = 53/122 (43%)
Query: 250 LPEDKSHVRFGSLESDVKEEVEHPSTTMRSTTE---DFKLPAQLVQRYVKVPCGSRLAVL 306
+P + + F + +D E++ +T E + QL QRY+ VP + A L
Sbjct: 176 VPARRQTLLFSATLTDTLRELQSLATNQPFFWEAQAPVRTVEQLDQRYLLVPEKVKDAYL 235
Query: 307 LSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSP---HSQPDMELKQLFLRCKT 363
+ ++++ D +++F +TC +L +F + HS M+ K+ F
Sbjct: 236 VHLIQNFQDEHEDWSIIIFTNTCKTCQILCMMLRKFNFPTVALHSM--MKQKERFAALAK 293
Query: 364 FR 365
F+
Sbjct: 294 FK 295
>FB|FBgn0032690 [details] [associations]
symbol:CG10333 species:7227 "Drosophila melanogaster"
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IC;ISS]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0005681 "spliceosomal complex" evidence=ISS] [GO:0030532 "small
nuclear ribonucleoprotein complex" evidence=ISS] [GO:0005682 "U5
snRNP" evidence=ISS] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0071011
"precatalytic spliceosome" evidence=IDA] [GO:0071013 "catalytic
step 2 spliceosome" evidence=IDA] [GO:0022008 "neurogenesis"
evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:AE014134
GO:GO:0022008 GO:GO:0005682 GO:GO:0003676 GO:GO:0071011
GO:GO:0000398 GO:GO:0071013 GeneTree:ENSGT00690000102171
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
InterPro:IPR014014 PROSITE:PS51195 KO:K12858 HSSP:Q58083
OMA:PIRNWKE FlyBase:FBgn0032690 EMBL:BT021222 RefSeq:NP_609888.2
UniGene:Dm.456 SMR:Q9VJ74 STRING:Q9VJ74 EnsemblMetazoa:FBtr0081072
GeneID:35112 KEGG:dme:Dmel_CG10333 UCSC:CG10333-RA
InParanoid:Q9VJ74 GenomeRNAi:35112 NextBio:791924 Uniprot:Q9VJ74
Length = 822
Score = 316 (116.3 bits), Expect = 1.5e-38, Sum P(2) = 1.5e-38
Identities = 83/267 (31%), Positives = 151/267 (56%)
Query: 19 SFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPII 78
S++ G + D + +++G++ PT +Q QAIP+ L R ++ A TG+GKT+A+L P++
Sbjct: 395 SWNESGFPKEIIDII-DKVGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLIPLL 453
Query: 79 NHLQSYSPRIDR----SSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENR 134
+ +QS P+I+R G +A+++ PTREL Q+ E K I V+GG +R
Sbjct: 454 SWIQSL-PKIERLEDVDQGPYAIIMAPTRELAQQIEEETTKFGQPLG-IRTVVVVGGLSR 511
Query: 135 SKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEIL 194
++ RLR G I++ATPGRL+D L++ L+ +I+ DEADR++++GF ++++IL
Sbjct: 512 EEQGFRLRLGCEIVIATPGRLIDVLENRYLVLN-QCTYIVLDEADRMIDMGFEPDVQKIL 570
Query: 195 DILGSRNIGSIGEGNE-----VSN--VK---RQNLLLSATLNEKVNHLAKISLETPVLIG 244
+ + N+ E E + N K RQ ++ +AT+ V LA+ L P +
Sbjct: 571 EYMPVTNLKPDTEEAEDETKLMENFYTKKKYRQTVMFTATMPPAVERLARTYLRRPATVY 630
Query: 245 LDEKKLPEDKSH-VRFGSLESDVKEEV 270
+ P +++ + + E+D ++++
Sbjct: 631 IGSVGKPTERTEQIVYMMGENDKRKKL 657
Score = 169 (64.5 bits), Expect = 1.5e-38, Sum P(2) = 1.5e-38
Identities = 34/88 (38%), Positives = 49/88 (55%)
Query: 366 LHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRVG 425
LHG QE R A K+ K +L++TDVA RG+D V +I YD A +Y HR+G
Sbjct: 696 LHGGKGQEQREYALAALKSGAKDILVATDVAGRGIDIKDVSLVINYDMAKTIEDYTHRIG 755
Query: 426 RTARLGERGDSLLFLQPVEMDYLQDLEK 453
RT R G+ G ++ F+ + DL++
Sbjct: 756 RTGRAGKTGCAISFVTKDDSALFYDLKQ 783
Score = 45 (20.9 bits), Expect = 7.0e-09, Sum P(2) = 7.0e-09
Identities = 14/51 (27%), Positives = 28/51 (54%)
Query: 202 IGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKI---SLETPVLIGLDEKK 249
IGS+G+ E + + ++ N+K L +I ++ PV+I +++KK
Sbjct: 631 IGSVGKPTE----RTEQIVYMMGENDKRKKLMEILSRKIDPPVIIFVNQKK 677
>UNIPROTKB|P25888 [details] [associations]
symbol:rhlE "ATP-dependent RNA helicase" species:83333
"Escherichia coli K-12" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0042255 "ribosome assembly" evidence=IGI]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=IDA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0003723
GO:GO:0005840 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0042255 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 EMBL:L02123 HOGENOM:HOG000268807 EMBL:X56307
PIR:E64816 RefSeq:NP_415318.1 RefSeq:YP_489070.1
ProteinModelPortal:P25888 SMR:P25888 DIP:DIP-10697N IntAct:P25888
MINT:MINT-1313387 PRIDE:P25888 EnsemblBacteria:EBESCT00000003075
EnsemblBacteria:EBESCT00000017437 GeneID:12930968 GeneID:945425
KEGG:ecj:Y75_p0770 KEGG:eco:b0797 PATRIC:32116795 EchoBASE:EB1217
EcoGene:EG11235 KO:K11927 OMA:HLIKQHN ProtClustDB:PRK10590
BioCyc:EcoCyc:EG11235-MONOMER BioCyc:ECOL316407:JW0781-MONOMER
Genevestigator:P25888 Uniprot:P25888
Length = 454
Score = 306 (112.8 bits), Expect = 1.6e-38, Sum P(2) = 1.6e-38
Identities = 69/182 (37%), Positives = 106/182 (58%)
Query: 19 SFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPII 78
SF SLGL + + E+ G+ PT +Q QAIP +L GR ++ +A TGTGKT + P++
Sbjct: 2 SFDSLGLSPDILRAVAEQ-GYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60
Query: 79 NHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEK 138
HL + P AL+L PTREL Q+ E + ++ I V GG + + +
Sbjct: 61 QHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDY-SKYLNIRSLVVFGGVSINPQM 119
Query: 139 ARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILG 198
+LR G+ +LVATPGRLLD L+H ++ + ++ DEADR+L++GF +I +L L
Sbjct: 120 MKLRGGVDVLVATPGRLLD-LEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLP 178
Query: 199 SR 200
++
Sbjct: 179 AK 180
Score = 173 (66.0 bits), Expect = 3.3e-22, Sum P(2) = 3.3e-22
Identities = 47/134 (35%), Positives = 73/134 (54%)
Query: 128 VMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFG 187
V GG + + + +LR G+ +LVATPGRLLD L+H ++ + ++ DEADR+L++GF
Sbjct: 109 VFGGVSINPQMMKLRGGVDVLVATPGRLLD-LEHQNAVKLDQVEILVLDEADRMLDMGFI 167
Query: 188 KEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDE 247
+I +L L + KRQNLL SAT ++ + LA+ L P+ I +
Sbjct: 168 HDIRRVLTKLPA---------------KRQNLLFSATFSDDIKALAEKLLHNPLEIEVAR 212
Query: 248 KKLPEDK--SHVRF 259
+ D+ HV F
Sbjct: 213 RNTASDQVTQHVHF 226
Score = 161 (61.7 bits), Expect = 1.6e-38, Sum P(2) = 1.6e-38
Identities = 38/115 (33%), Positives = 60/115 (52%)
Query: 366 LHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRVG 425
+HGN Q R FK+ +L++TD+AARGLD ++ ++ Y+ +YVHR+G
Sbjct: 275 IHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIG 334
Query: 426 RTARLGERGDSLLFLQPVEMDYLQDLEKHGVSLTEYPLLKVLDSFPLYGQKPRVK 480
RT R G++L + E L+D+EK + E P + + P Y P +K
Sbjct: 335 RTGRAAATGEALSLVCVDEHKLLRDIEK--LLKKEIPRIAI----PGYEPDPSIK 383
>UNIPROTKB|Q9Y6V7 [details] [associations]
symbol:DDX49 "Probable ATP-dependent RNA helicase DDX49"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
EMBL:AC002985 KO:K14778 HOGENOM:HOG000268802 OMA:EVRTVEQ
HOVERGEN:HBG100512 EMBL:AK223294 EMBL:BC002674 IPI:IPI00003739
RefSeq:NP_061943.2 UniGene:Hs.143187 ProteinModelPortal:Q9Y6V7
SMR:Q9Y6V7 IntAct:Q9Y6V7 STRING:Q9Y6V7 PhosphoSite:Q9Y6V7
DMDM:74753527 PaxDb:Q9Y6V7 PRIDE:Q9Y6V7 DNASU:54555
Ensembl:ENST00000247003 GeneID:54555 KEGG:hsa:54555 UCSC:uc002nkq.2
CTD:54555 GeneCards:GC19P019030 HGNC:HGNC:18684 neXtProt:NX_Q9Y6V7
PharmGKB:PA134956171 InParanoid:Q9Y6V7 OrthoDB:EOG4C87SC
PhylomeDB:Q9Y6V7 GenomeRNAi:54555 NextBio:57032 ArrayExpress:Q9Y6V7
Bgee:Q9Y6V7 CleanEx:HS_DDX49 Genevestigator:Q9Y6V7
GermOnline:ENSG00000105671 Uniprot:Q9Y6V7
Length = 483
Score = 296 (109.3 bits), Expect = 1.6e-38, Sum P(2) = 1.6e-38
Identities = 83/224 (37%), Positives = 121/224 (54%)
Query: 20 FSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIIN 79
F+ LGL S L +Q R+ LG + PT VQ IP IL GR L A TG+GKT A++ PI+
Sbjct: 4 FAELGLSSWLVEQCRQ-LGLKQPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLPILQ 62
Query: 80 HLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKA 139
L S P G F LVL PTREL Q+ E ++L + + ++GG + +
Sbjct: 63 KL-SEDPY-----GIFCLVLTPTRELAYQIAEQF-RVLGKPLGLKDCIIVGGMDMVAQAL 115
Query: 140 RLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELG---FGKEIEEILDI 196
L + +++ATPGRL DHL+ +++F +R+++ DEADR+LE G F ++E IL
Sbjct: 116 ELSRKPHVVIATPGRLADHLRSSNTFSIKKIRFLVMDEADRLLEQGCTDFTVDLEAILAA 175
Query: 197 LGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETP 240
+ +R RQ LL SATL + + L ++ P
Sbjct: 176 VPAR---------------RQTLLFSATLTDTLRELQGLATNQP 204
Score = 178 (67.7 bits), Expect = 1.6e-38, Sum P(2) = 1.6e-38
Identities = 34/91 (37%), Positives = 56/91 (61%)
Query: 363 TFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVH 422
T LH MKQ++R FK+ +L++TDVA+RGLD P V+ +I +++ G Y+H
Sbjct: 275 TVALHSMMKQKERFAALAKFKSSIYRILIATDVASRGLDIPTVQVVINHNTPGLPKIYIH 334
Query: 423 RVGRTARLGERGDSLLFLQPVEMDYLQDLEK 453
RVGRTAR G +G ++ + ++ + +E+
Sbjct: 335 RVGRTARAGRQGQAITLVTQYDIHLVHAIEE 365
Score = 69 (29.3 bits), Expect = 4.3e-27, Sum P(2) = 4.3e-27
Identities = 21/80 (26%), Positives = 37/80 (46%)
Query: 289 QLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSP-- 346
QL QRY+ VP + A L+ +++ D +++F +TC +L +F +
Sbjct: 218 QLDQRYLLVPEKVKDAYLVHLIQRFQDEHEDWSIIIFTNTCKTCQILCMMLRKFSFPTVA 277
Query: 347 -HSQPDMELKQLFLRCKTFR 365
HS M+ K+ F F+
Sbjct: 278 LHSM--MKQKERFAALAKFK 295
>UNIPROTKB|E2RBM7 [details] [associations]
symbol:DDX49 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 KO:K14778
OMA:EVRTVEQ GeneTree:ENSGT00670000098028 CTD:54555
EMBL:AAEX03012274 RefSeq:XP_541930.1 ProteinModelPortal:E2RBM7
Ensembl:ENSCAFT00000023054 GeneID:484814 KEGG:cfa:484814
NextBio:20858886 Uniprot:E2RBM7
Length = 488
Score = 296 (109.3 bits), Expect = 1.8e-38, Sum P(2) = 1.8e-38
Identities = 83/224 (37%), Positives = 121/224 (54%)
Query: 20 FSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIIN 79
F+ LGL S L +Q R+ LG + PT VQ IP IL GR L A TG+GKT A++ PI+
Sbjct: 4 FAELGLSSWLVEQCRQ-LGLKQPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLPILQ 62
Query: 80 HLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKA 139
L S P G F LVL PTREL Q+ E ++L + + ++GG + +
Sbjct: 63 KL-SEDPY-----GIFCLVLTPTRELAYQIAEQF-RVLGKPLGLKDCIIVGGMDMVAQAL 115
Query: 140 RLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELG---FGKEIEEILDI 196
L + +++ATPGRL DHL+ +++F +R+++ DEADR+LE G F ++E IL
Sbjct: 116 ELSRKPHVVIATPGRLADHLRSSNTFSIKKIRFLVMDEADRLLEQGCTDFTVDLEAILAA 175
Query: 197 LGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETP 240
+ +R RQ LL SATL + + L ++ P
Sbjct: 176 VPTR---------------RQTLLFSATLTDTLKELQGLATNQP 204
Score = 178 (67.7 bits), Expect = 1.8e-38, Sum P(2) = 1.8e-38
Identities = 34/91 (37%), Positives = 56/91 (61%)
Query: 363 TFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVH 422
T LH MKQ++R FK+ +L++TDVA+RGLD P V+ +I +++ G Y+H
Sbjct: 275 TVALHSMMKQKERFAALAKFKSSIYRILIATDVASRGLDIPTVQVVINHNTPGLPKIYIH 334
Query: 423 RVGRTARLGERGDSLLFLQPVEMDYLQDLEK 453
RVGRTAR G +G ++ + ++ + +E+
Sbjct: 335 RVGRTARAGRQGQAITLVTQYDIHLVHAIEE 365
Score = 72 (30.4 bits), Expect = 2.4e-27, Sum P(2) = 2.4e-27
Identities = 27/122 (22%), Positives = 54/122 (44%)
Query: 250 LPEDKSHVRFGSLESDVKEEVEHPSTTMRSTTE---DFKLPAQLVQRYVKVPCGSRLAVL 306
+P + + F + +D +E++ +T E + QL QRY+ VP + A L
Sbjct: 176 VPTRRQTLLFSATLTDTLKELQGLATNQPFFWEAQAPVRTVEQLDQRYLLVPEKVKDAYL 235
Query: 307 LSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSP---HSQPDMELKQLFLRCKT 363
+ ++++ D +++F +TC +L +F + HS M+ K+ F
Sbjct: 236 VHLIQNFQDEHEDWSIIIFTNTCKTCQILCMMLRKFNFPTVALHSM--MKQKERFAALAK 293
Query: 364 FR 365
F+
Sbjct: 294 FK 295
>WB|WBGene00017162 [details] [associations]
symbol:ddx-23 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0002009 "morphogenesis of an
epithelium" evidence=IMP] [GO:0040011 "locomotion" evidence=IMP]
[GO:0000003 "reproduction" evidence=IMP] [GO:0040035 "hermaphrodite
genitalia development" evidence=IMP] [GO:0040007 "growth"
evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0042127 "regulation of cell proliferation"
evidence=IMP] [GO:0040020 "regulation of meiosis" evidence=IMP]
[GO:0010172 "embryonic body morphogenesis" evidence=IMP]
[GO:0048589 "developmental growth" evidence=IMP] [GO:0007281 "germ
cell development" evidence=IMP] [GO:0005634 "nucleus" evidence=IDA]
[GO:0040021 "hermaphrodite germ-line sex determination"
evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0009792 GO:GO:0002009 GO:GO:0002119 GO:GO:0040011
GO:GO:0003676 GO:GO:0042127 GO:GO:0040035 GO:GO:0007281
GO:GO:0048589 EMBL:FO080705 GO:GO:0010172 GO:GO:0040020
GeneTree:ENSGT00690000102171 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K12858 HSSP:Q58083 HOGENOM:HOG000268796
OMA:PIRNWKE GO:GO:0040021 RefSeq:NP_498260.2
ProteinModelPortal:Q95QN2 SMR:Q95QN2 STRING:Q95QN2 PaxDb:Q95QN2
EnsemblMetazoa:F01F1.7 GeneID:175818 KEGG:cel:CELE_F01F1.7
CTD:175818 WormBase:F01F1.7 InParanoid:Q95QN2 NextBio:889790
Uniprot:Q95QN2
Length = 730
Score = 314 (115.6 bits), Expect = 2.0e-38, Sum P(2) = 2.0e-38
Identities = 75/237 (31%), Positives = 135/237 (56%)
Query: 32 QLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRS 91
Q + +G+ PT +Q QAIP+ L R V+ A TG+GKT A+L P++ + S P+++R
Sbjct: 314 QAVKEIGYLEPTPIQRQAIPIGLQNRDVIGVAETGSGKTAAFLLPLLVWITSL-PKMERQ 372
Query: 92 S----GTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISI 147
G +A+++ PTREL Q+ E +K + I V+GG +R + +LR G+ +
Sbjct: 373 EHRDLGPYAIIMAPTRELAQQIEEETNKF-GKLLGIKTVSVIGGASREDQGMKLRMGVEV 431
Query: 148 LVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILGSRNIGSIGE 207
++ATPGRLLD L++ L+ ++I DEADR+L++GF +++++L+ + N+ +
Sbjct: 432 VIATPGRLLDVLENRYLLLN-QCTYVILDEADRMLDMGFEPDVQKVLEYMPDTNMKKDTD 490
Query: 208 --GNEVSNVK--------RQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLPEDK 254
NE + +K RQ ++ +AT++ + LA+ L P ++ + P ++
Sbjct: 491 EFDNEEALMKGFSTREKYRQTVMFTATMSSAIERLARQYLRRPAVVHIGSAGKPTER 547
Score = 168 (64.2 bits), Expect = 2.0e-38, Sum P(2) = 2.0e-38
Identities = 39/104 (37%), Positives = 54/104 (51%)
Query: 351 DMELKQLF-LRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCII 409
DM K L L K LHG Q+ R A K +L++TDVA RG+D V ++
Sbjct: 587 DMLSKGLTKLGFKPTVLHGGKGQDQREYALQALKEGTSDILVATDVAGRGIDVKDVSLVL 646
Query: 410 QYDSAGEATEYVHRVGRTARLGERGDSLLFLQPVEMDYLQDLEK 453
YD A +Y HR+GRT R G+ G ++ FL P + DL++
Sbjct: 647 NYDMAKSIEDYTHRIGRTGRAGKHGKAITFLTPDDTAVYFDLKQ 690
>RGD|1311124 [details] [associations]
symbol:Ddx49 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 49"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 RGD:1311124 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 OMA:EVRTVEQ
GeneTree:ENSGT00670000098028 IPI:IPI00362462 PRIDE:E9PTF0
Ensembl:ENSRNOT00000004891 UCSC:RGD:1311124 Uniprot:E9PTF0
Length = 480
Score = 291 (107.5 bits), Expect = 2.0e-38, Sum P(2) = 2.0e-38
Identities = 82/224 (36%), Positives = 120/224 (53%)
Query: 20 FSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIIN 79
F+ L L S L +Q R+ LG + PT VQ IP IL GR L A TG+GKT A++ PI+
Sbjct: 4 FAELRLSSWLVEQCRQ-LGLKQPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLPILQ 62
Query: 80 HLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKA 139
L S P G F LVL PTREL Q+ E ++L + + ++GG + +
Sbjct: 63 KL-SEDPY-----GIFCLVLTPTRELAYQIAEQF-RVLGKPLGLKDCIIVGGMDMVTQAL 115
Query: 140 RLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELG---FGKEIEEILDI 196
L + +++ATPGRL DHL+ +++F +R+++ DEADR+LE G F ++E IL
Sbjct: 116 ELSRKPHVVIATPGRLADHLRSSNTFNMKKIRFLVLDEADRLLEQGCTDFTADLETILSA 175
Query: 197 LGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETP 240
+ +R RQ LL SATL + + L ++ P
Sbjct: 176 VPAR---------------RQTLLFSATLTDTLKELQGLATNQP 204
Score = 183 (69.5 bits), Expect = 2.0e-38, Sum P(2) = 2.0e-38
Identities = 35/91 (38%), Positives = 56/91 (61%)
Query: 363 TFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVH 422
T LH MKQ++R FK+ +L++TDVA+RGLD P V+ +I +++ G Y+H
Sbjct: 275 TVALHSMMKQKERFAALARFKSSTYRILIATDVASRGLDIPTVQVVINHNTPGLPKIYIH 334
Query: 423 RVGRTARLGERGDSLLFLQPVEMDYLQDLEK 453
RVGRTAR G +G ++ + ++ L +E+
Sbjct: 335 RVGRTARAGRQGQAITLVTQYDIHLLHAIEE 365
Score = 64 (27.6 bits), Expect = 6.0e-26, Sum P(2) = 6.0e-26
Identities = 27/122 (22%), Positives = 53/122 (43%)
Query: 250 LPEDKSHVRFGSLESDVKEEVEHPSTTMRSTTE---DFKLPAQLVQRYVKVPCGSRLAVL 306
+P + + F + +D +E++ +T E + QL QRY+ VP + A L
Sbjct: 176 VPARRQTLLFSATLTDTLKELQGLATNQPFFWEAQATVRTVEQLDQRYLLVPEKVKDAYL 235
Query: 307 LSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSP---HSQPDMELKQLFLRCKT 363
+ +++ D +++F +TC +L +F + HS M+ K+ F
Sbjct: 236 VHLVQTFQDQLEDCSIIIFTNTCKTCQILCMMLRKFNFPTVALHSM--MKQKERFAALAR 293
Query: 364 FR 365
F+
Sbjct: 294 FK 295
>TIGR_CMR|SO_3783 [details] [associations]
symbol:SO_3783 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:AE014299
GenomeReviews:AE014299_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
HSSP:Q58083 HOGENOM:HOG000268807 KO:K11927 OMA:HLIKQHN
RefSeq:NP_719320.1 ProteinModelPortal:Q8EAV8 GeneID:1171430
KEGG:son:SO_3783 PATRIC:23527244 ProtClustDB:CLSK2393932
Uniprot:Q8EAV8
Length = 535
Score = 302 (111.4 bits), Expect = 2.1e-38, Sum P(2) = 2.1e-38
Identities = 72/182 (39%), Positives = 112/182 (61%)
Query: 19 SFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPII 78
SFS+LGL + L + E+ G++ P+ +QAQAIP +L+G+ V+ A TGTGKT + P++
Sbjct: 2 SFSALGLSAPLQKAVSEQ-GYDTPSPIQAQAIPAVLTGKDVMAAAQTGTGKTAGFTLPLL 60
Query: 79 NHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEK 138
L +S T ALVL PTREL QV E + + ++ + V GG + +
Sbjct: 61 ELLAKGHKA--KSGQTRALVLTPTRELAAQVGESV-ETYGKYLPLRSAVVFGGVPINPQI 117
Query: 139 ARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILG 198
+LR G+ +LVATPGRLLD L ++ L ++ DEADR+L++GF ++I++IL +L
Sbjct: 118 NKLRHGVDVLVATPGRLLD-LVQQNAVKFNQLEILVLDEADRMLDMGFIRDIKKILALLP 176
Query: 199 SR 200
++
Sbjct: 177 AK 178
Score = 174 (66.3 bits), Expect = 2.1e-38, Sum P(2) = 2.1e-38
Identities = 42/169 (24%), Positives = 79/169 (46%)
Query: 285 KLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQW 344
+L LV V++ R A ++ + + + +QK + ++ L+ F
Sbjct: 194 ELAKGLVNHPVEISVTPRNAAATTVKQWICPVDKTQKSALLIQLIKQENWQQVLV--FSR 251
Query: 345 SPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPK 404
+ H + + +HGN Q R FK+ + +L++TD+AARGLD +
Sbjct: 252 TKHGANRLAKSLIQAEISAAAIHGNKSQGARTKALADFKSGEVRVLVATDIAARGLDIDQ 311
Query: 405 VKCIIQYDSAGEATEYVHRVGRTARLGERGDSLLFLQPVEMDYLQDLEK 453
+ ++ +D +YVHR+GRT R G G ++ + E+ L+D+E+
Sbjct: 312 LPQVVNFDLPNVPEDYVHRIGRTGRAGATGQAVSLVSSEEIKLLKDIER 360
Score = 166 (63.5 bits), Expect = 1.4e-22, Sum P(2) = 1.4e-22
Identities = 44/118 (37%), Positives = 69/118 (58%)
Query: 128 VMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFG 187
V GG + + +LR G+ +LVATPGRLLD L ++ L ++ DEADR+L++GF
Sbjct: 107 VFGGVPINPQINKLRHGVDVLVATPGRLLD-LVQQNAVKFNQLEILVLDEADRMLDMGFI 165
Query: 188 KEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGL 245
++I++IL +L + KRQNL+ SAT ++++ LAK + PV I +
Sbjct: 166 RDIKKILALLPA---------------KRQNLMFSATFSDEIRELAKGLVNHPVEISV 208
Score = 37 (18.1 bits), Expect = 4.6e-24, Sum P(2) = 4.6e-24
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 238 ETPVLIGLDEKKLPEDKSHVRFG 260
+ P ++ D +PED H R G
Sbjct: 311 QLPQVVNFDLPNVPEDYVH-RIG 332
>UNIPROTKB|E2R316 [details] [associations]
symbol:DDX55 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313
Pfam:PF13959 Ensembl:ENSCAFT00000035837 Uniprot:E2R316
Length = 483
Score = 258 (95.9 bits), Expect = 2.2e-38, Sum P(2) = 2.2e-38
Identities = 74/230 (32%), Positives = 116/230 (50%)
Query: 25 LHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSY 84
LH + L + LGF T VQ+ IP+ + + V A TG+GKT+A++ PI+ L
Sbjct: 16 LHPQVLGALGQ-LGFPHMTPVQSATIPLFMKNKDVAAEAVTGSGKTLAFVIPILEILLRR 74
Query: 85 SPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRK- 143
++ ++ A+++ PTREL +QV E+L F +GG N + + +R ++
Sbjct: 75 EEKLKKNQ-VGAIIITPTRELAIQVDEVLAHFTKSFPQFSQILWIGGRNPADDVSRFKEQ 133
Query: 144 GISILVATPGRLLDHLKHTSSFLHT-----NLRWIIFDEADRILELGFGKEIEEILDILG 198
G +I+VATPGRL D + L +L ++ DEADR+L++GF I IL+ L
Sbjct: 134 GGNIIVATPGRLEDMFRRKVEGLDLASCVKSLEVLVLDEADRLLDMGFEASINTILEFLP 193
Query: 199 SRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEK 248
+ R+ L SAT ++V L + L PV I + EK
Sbjct: 194 KQ---------------RRTGLFSATQTQEVESLVRAGLRNPVRISVKEK 228
Score = 222 (83.2 bits), Expect = 2.2e-38, Sum P(2) = 2.2e-38
Identities = 51/143 (35%), Positives = 77/143 (53%)
Query: 310 LKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGN 369
L H +K ++FFSTC V+++ L +K + + C +HG
Sbjct: 258 LVHFLRNHKQEKHLIFFSTCACVEYYGKALEAL-----------VKSVKIMC----IHGK 302
Query: 370 MKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRVGRTAR 429
MK + R F F+ + +L+ TDV ARG+D P+V ++QYD A+ +VHR GRTAR
Sbjct: 303 MKHK-RNKIFMEFRKLQSGILVCTDVMARGIDIPEVNWVLQYDPPSSASAFVHRCGRTAR 361
Query: 430 LGERGDSLLFLQPVEMDYLQDLE 452
+G G +L+FL P+E Y+ LE
Sbjct: 362 IGHGGSALVFLLPMEESYVTFLE 384
>TAIR|locus:2057640 [details] [associations]
symbol:AT2G33730 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM;IDA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0006486 "protein glycosylation"
evidence=RCA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0008380
GO:GO:0006397 GO:GO:0003723 EMBL:U78721 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 KO:K12858 HOGENOM:HOG000268796
OMA:PIRNWKE EMBL:AY065194 EMBL:AY093244 IPI:IPI00525282 PIR:H84748
RefSeq:NP_180929.1 UniGene:At.27506 ProteinModelPortal:P93008
SMR:P93008 STRING:P93008 PaxDb:P93008 PRIDE:P93008
EnsemblPlants:AT2G33730.1 GeneID:817938 KEGG:ath:AT2G33730
GeneFarm:938 TAIR:At2g33730 InParanoid:P93008 PhylomeDB:P93008
ProtClustDB:CLSN2683508 Genevestigator:P93008 GermOnline:AT2G33730
Uniprot:P93008
Length = 733
Score = 318 (117.0 bits), Expect = 2.8e-38, Sum P(2) = 2.8e-38
Identities = 70/213 (32%), Positives = 123/213 (57%)
Query: 35 ERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSS-- 92
ER G++ P+ +Q AIP+ L R V+ A TG+GKT A++ P++ ++ P + +
Sbjct: 329 ERAGYKKPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLAYISRLPPMSEENETE 388
Query: 93 GTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATP 152
G +A+V+ PTREL Q+ E K H + V ++GG++ ++ ++ +G I++ATP
Sbjct: 389 GPYAVVMAPTRELAQQIEEETVKFAHYLGFRVTS-IVGGQSIEEQGLKITQGCEIVIATP 447
Query: 153 GRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILGSRNIGSIGEGNEVS 212
GRL+D L+ + L+ +++ DEADR++++GF ++ +LD + S N+ E E+
Sbjct: 448 GRLIDCLERRYAVLN-QCNYVVLDEADRMIDMGFEPQVAGVLDAMPSSNLKPENEEEELD 506
Query: 213 NVK--RQNLLLSATLNEKVNHLAKISLETPVLI 243
K R + SAT+ V LA+ L PV++
Sbjct: 507 EKKIYRTTYMFSATMPPGVERLARKYLRNPVVV 539
Score = 162 (62.1 bits), Expect = 2.8e-38, Sum P(2) = 2.8e-38
Identities = 32/88 (36%), Positives = 48/88 (54%)
Query: 366 LHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRVG 425
LHG QE R + F+ ++ +L++TDV RG+D P V +I YD Y HR+G
Sbjct: 606 LHGGKSQEQREISLEGFRAKRYNVLVATDVVGRGIDIPDVAHVINYDMPKHIEMYTHRIG 665
Query: 426 RTARLGERGDSLLFLQPVEMDYLQDLEK 453
RT R G+ G + FL + + DL++
Sbjct: 666 RTGRAGKSGVATSFLTLHDTEVFYDLKQ 693
>UNIPROTKB|F1NJA0 [details] [associations]
symbol:DDX55 "ATP-dependent RNA helicase DDX55"
species:9031 "Gallus gallus" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313
Pfam:PF13959 GeneTree:ENSGT00550000074969 IPI:IPI00590534
OMA:CACVEYW EMBL:AADN02034882 Ensembl:ENSGALT00000005224
Uniprot:F1NJA0
Length = 591
Score = 256 (95.2 bits), Expect = 2.8e-38, Sum P(2) = 2.8e-38
Identities = 69/218 (31%), Positives = 113/218 (51%)
Query: 37 LGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFA 96
LGF+ T VQ+ IP+ +S + V A TG+GKT+A++ PI+ L ++ + A
Sbjct: 27 LGFDRMTPVQSATIPLFMSNKDVAAEAVTGSGKTLAFVIPILEILLRREEKLKKMQ-VGA 85
Query: 97 LVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRK-GISILVATPGRL 155
+++ PTREL +Q+ E+L F ++GG N ++ + ++ G +I+VATPGRL
Sbjct: 86 IIITPTRELAIQIDEVLTHFTKHFPKFSQILLIGGRNPMEDVEKFKEHGGNIIVATPGRL 145
Query: 156 LDHLKHTSSFLHT-----NLRWIIFDEADRILELGFGKEIEEILDILGSRNIGSIGEGNE 210
D + + L +L ++ DEADR+L++GF + IL L +
Sbjct: 146 EDLFRRKADGLDLASCVKSLDVLVLDEADRLLDMGFESSLNAILAFLPKQ---------- 195
Query: 211 VSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEK 248
R+ L SAT ++V +L + L PV I + EK
Sbjct: 196 -----RRTGLFSATQTQEVENLVRAGLRNPVRISVKEK 228
Score = 228 (85.3 bits), Expect = 2.8e-38, Sum P(2) = 2.8e-38
Identities = 58/164 (35%), Positives = 83/164 (50%)
Query: 310 LKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGN 369
L H +K +VFFSTC V+++ L +KQ+ + C +HG
Sbjct: 258 LVHFLRQHKQEKHLVFFSTCACVEYYGKALESL-----------IKQVKIMC----IHGK 302
Query: 370 MKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRVGRTAR 429
MK + R F F+ +L+ TDV ARG+D P+V ++QYD A+ +VHR GRTAR
Sbjct: 303 MKHK-RNKIFTEFRRLAGGILVCTDVMARGIDIPEVHWVLQYDPPSSASAFVHRCGRTAR 361
Query: 430 LGERGDSLLFLQPVEMDYLQDLE-KHGVSLTEY-PLLKVLDSFP 471
+G G +L+FL P+E Y+ L + E P VLD P
Sbjct: 362 IGNAGSALVFLLPMEESYINFLSINQKCPMQEMQPQRNVLDLLP 405
>UNIPROTKB|Q5ZLN8 [details] [associations]
symbol:DDX55 "ATP-dependent RNA helicase DDX55"
species:9031 "Gallus gallus" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
InterPro:IPR025313 Pfam:PF13959 HSSP:P26196 CTD:57696
HOGENOM:HOG000268803 HOVERGEN:HBG107796 KO:K14809 OrthoDB:EOG4WH8KN
EMBL:AJ719696 IPI:IPI00590534 RefSeq:NP_001006185.1
UniGene:Gga.42731 ProteinModelPortal:Q5ZLN8 STRING:Q5ZLN8
PRIDE:Q5ZLN8 GeneID:416820 KEGG:gga:416820 InParanoid:Q5ZLN8
NextBio:20820225 Uniprot:Q5ZLN8
Length = 591
Score = 256 (95.2 bits), Expect = 2.8e-38, Sum P(2) = 2.8e-38
Identities = 69/218 (31%), Positives = 113/218 (51%)
Query: 37 LGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFA 96
LGF+ T VQ+ IP+ +S + V A TG+GKT+A++ PI+ L ++ + A
Sbjct: 27 LGFDRMTPVQSATIPLFMSNKDVAAEAVTGSGKTLAFVIPILEILLRREEKLKKMQ-VGA 85
Query: 97 LVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRK-GISILVATPGRL 155
+++ PTREL +Q+ E+L F ++GG N ++ + ++ G +I+VATPGRL
Sbjct: 86 IIITPTRELAIQIDEVLTHFTKHFPKFSQILLIGGRNPMEDVEKFKEHGGNIIVATPGRL 145
Query: 156 LDHLKHTSSFLHT-----NLRWIIFDEADRILELGFGKEIEEILDILGSRNIGSIGEGNE 210
D + + L +L ++ DEADR+L++GF + IL L +
Sbjct: 146 EDLFRRKADGLDLASCVKSLDVLVLDEADRLLDMGFESSLNAILAFLPKQ---------- 195
Query: 211 VSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEK 248
R+ L SAT ++V +L + L PV I + EK
Sbjct: 196 -----RRTGLFSATQTQEVENLVRAGLRNPVRISVKEK 228
Score = 228 (85.3 bits), Expect = 2.8e-38, Sum P(2) = 2.8e-38
Identities = 58/164 (35%), Positives = 83/164 (50%)
Query: 310 LKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGN 369
L H +K +VFFSTC V+++ L +KQ+ + C +HG
Sbjct: 258 LVHFLRQHKQEKHLVFFSTCACVEYYGKALESL-----------IKQVKIMC----IHGK 302
Query: 370 MKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRVGRTAR 429
MK + R F F+ +L+ TDV ARG+D P+V ++QYD A+ +VHR GRTAR
Sbjct: 303 MKHK-RNKIFTEFRRLAGGILVCTDVMARGIDIPEVHWVLQYDPPSSASAFVHRCGRTAR 361
Query: 430 LGERGDSLLFLQPVEMDYLQDLE-KHGVSLTEY-PLLKVLDSFP 471
+G G +L+FL P+E Y+ L + E P VLD P
Sbjct: 362 IGNAGSALVFLLPMEESYINFLSINQKCPMQEMQPQRNVLDLLP 405
>MGI|MGI:2136689 [details] [associations]
symbol:Ddx49 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 49"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 MGI:MGI:2136689 GO:GO:0005524
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K14778 HOGENOM:HOG000268802 OMA:EVRTVEQ
GeneTree:ENSGT00670000098028 HOVERGEN:HBG100512 CTD:54555
OrthoDB:EOG4C87SC EMBL:BC099554 IPI:IPI00354271
RefSeq:NP_001020093.2 UniGene:Mm.388127 UniGene:Mm.440659
ProteinModelPortal:Q4FZF3 SMR:Q4FZF3 PhosphoSite:Q4FZF3
PRIDE:Q4FZF3 Ensembl:ENSMUST00000008004 GeneID:234374
KEGG:mmu:234374 UCSC:uc009lzu.1 InParanoid:Q4FZF3 NextBio:382139
Bgee:Q4FZF3 CleanEx:MM_DDX49 Genevestigator:Q4FZF3
GermOnline:ENSMUSG00000057788 Uniprot:Q4FZF3
Length = 480
Score = 291 (107.5 bits), Expect = 3.3e-38, Sum P(2) = 3.3e-38
Identities = 81/224 (36%), Positives = 121/224 (54%)
Query: 20 FSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIIN 79
F+ +GL S L +Q R+ LG + PT VQ IP IL GR L A TG+GKT A++ PI+
Sbjct: 4 FAEIGLSSWLVEQCRQ-LGLKQPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLPILQ 62
Query: 80 HLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKA 139
L S P G F LVL PTREL Q+ E ++L + + ++GG + +
Sbjct: 63 KL-SEDPY-----GIFCLVLTPTRELAYQIAEQF-RVLGKPLGLKDCIIVGGMDMVAQAL 115
Query: 140 RLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELG---FGKEIEEILDI 196
L + +++ATPGRL DHL+ +++F +++++ DEADR+LE G F ++E IL
Sbjct: 116 ELSRKPHVVIATPGRLADHLRSSNTFNMKKIQFLVMDEADRLLEQGCTDFTTDLETILAA 175
Query: 197 LGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETP 240
+ +R RQ LL SATL + + L ++ P
Sbjct: 176 VPAR---------------RQTLLFSATLTDTLKELQGLATNEP 204
Score = 181 (68.8 bits), Expect = 3.3e-38, Sum P(2) = 3.3e-38
Identities = 35/91 (38%), Positives = 56/91 (61%)
Query: 363 TFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVH 422
T LH MKQ++R FK+ +L++TDVA+RGLD P V+ +I +++ G Y+H
Sbjct: 275 TVALHSMMKQKERFAALAKFKSSIYRILIATDVASRGLDIPTVQVVINHNTPGLPKIYIH 334
Query: 423 RVGRTARLGERGDSLLFLQPVEMDYLQDLEK 453
RVGRTAR G +G ++ + ++ L +E+
Sbjct: 335 RVGRTARAGRQGQAITLVTQYDIHLLHAIEE 365
Score = 62 (26.9 bits), Expect = 9.7e-26, Sum P(2) = 9.7e-26
Identities = 21/80 (26%), Positives = 37/80 (46%)
Query: 289 QLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSP-- 346
QL QRY+ VP + A L+ +++ D +++F +TC +L +F +
Sbjct: 218 QLDQRYLLVPEKVKDAYLVHLVQTFQDQLEDCSIIIFTNTCKTCQILCMMLRKFNFPTVA 277
Query: 347 -HSQPDMELKQLFLRCKTFR 365
HS M+ K+ F F+
Sbjct: 278 LHSM--MKQKERFAALAKFK 295
>UNIPROTKB|Q8EE19 [details] [associations]
symbol:SO_2571 "ATP-dependent RNA helicase DEAD box family"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 OMA:FRNLCAI
HOGENOM:HOG000268807 RefSeq:NP_718157.1 ProteinModelPortal:Q8EE19
GeneID:1170275 KEGG:son:SO_2571 PATRIC:23524769
ProtClustDB:CLSK906777 Uniprot:Q8EE19
Length = 475
Score = 319 (117.4 bits), Expect = 3.3e-38, Sum P(2) = 3.3e-38
Identities = 72/179 (40%), Positives = 118/179 (65%)
Query: 20 FSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIIN 79
FS LGLHS L + E LG+++PT +Q QAIP IL+G++VL A TGTGKT +++ P++
Sbjct: 3 FSQLGLHSALVKAVTE-LGYQSPTPIQTQAIPSILAGKNVLAAAQTGTGKTASFVLPLL- 60
Query: 80 HLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKA 139
H + +P+I R +++L PTREL LQV + +++ ++ + + GG + + +K
Sbjct: 61 HRFADAPKI-RPKRVRSIILTPTRELALQVEQNINQYA-KYLPLTAMAMYGGVDAAPQKK 118
Query: 140 RLRKGISILVATPGRLLD-HLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDIL 197
RL +G+ +LVATPGRLLD + + F ++ ++ DEADR+L++GF ++I I++ L
Sbjct: 119 RLIEGVDLLVATPGRLLDMYTQRAIRFDEVSV--LVLDEADRMLDMGFIEDINNIIEKL 175
Score = 157 (60.3 bits), Expect = 1.5e-18, Sum P(2) = 1.5e-18
Identities = 42/119 (35%), Positives = 68/119 (57%)
Query: 130 GGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKE 189
GG + + +K RL +G+ +LVATPGRLLD + + + ++ DEADR+L++GF ++
Sbjct: 109 GGVDAAPQKKRLIEGVDLLVATPGRLLD-MYTQRAIRFDEVSVLVLDEADRMLDMGFIED 167
Query: 190 IEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEK 248
I I++ L + RQNLL SATL+++V LAK ++ + I + K
Sbjct: 168 INNIIEKLPEQ---------------RQNLLFSATLSKQVKALAKTAIPDAIEIEISRK 211
Score = 144 (55.7 bits), Expect = 3.3e-38, Sum P(2) = 3.3e-38
Identities = 29/87 (33%), Positives = 47/87 (54%)
Query: 367 HGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRVGR 426
H Q R FK K L++T V +RG+D ++ +I YD EA +Y+HR+GR
Sbjct: 274 HSGRSQAIREQLLIDFKAGKVPFLVATGVVSRGIDIDALERVINYDLPDEADDYIHRIGR 333
Query: 427 TARLGERGDSLLFLQPVEMDYLQDLEK 453
T R G +G+++ F+ + L +E+
Sbjct: 334 TGRAGNQGEAISFVSKDDFRNLCAIER 360
>TIGR_CMR|SO_2571 [details] [associations]
symbol:SO_2571 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 OMA:FRNLCAI
HOGENOM:HOG000268807 RefSeq:NP_718157.1 ProteinModelPortal:Q8EE19
GeneID:1170275 KEGG:son:SO_2571 PATRIC:23524769
ProtClustDB:CLSK906777 Uniprot:Q8EE19
Length = 475
Score = 319 (117.4 bits), Expect = 3.3e-38, Sum P(2) = 3.3e-38
Identities = 72/179 (40%), Positives = 118/179 (65%)
Query: 20 FSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIIN 79
FS LGLHS L + E LG+++PT +Q QAIP IL+G++VL A TGTGKT +++ P++
Sbjct: 3 FSQLGLHSALVKAVTE-LGYQSPTPIQTQAIPSILAGKNVLAAAQTGTGKTASFVLPLL- 60
Query: 80 HLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKA 139
H + +P+I R +++L PTREL LQV + +++ ++ + + GG + + +K
Sbjct: 61 HRFADAPKI-RPKRVRSIILTPTRELALQVEQNINQYA-KYLPLTAMAMYGGVDAAPQKK 118
Query: 140 RLRKGISILVATPGRLLD-HLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDIL 197
RL +G+ +LVATPGRLLD + + F ++ ++ DEADR+L++GF ++I I++ L
Sbjct: 119 RLIEGVDLLVATPGRLLDMYTQRAIRFDEVSV--LVLDEADRMLDMGFIEDINNIIEKL 175
Score = 157 (60.3 bits), Expect = 1.5e-18, Sum P(2) = 1.5e-18
Identities = 42/119 (35%), Positives = 68/119 (57%)
Query: 130 GGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKE 189
GG + + +K RL +G+ +LVATPGRLLD + + + ++ DEADR+L++GF ++
Sbjct: 109 GGVDAAPQKKRLIEGVDLLVATPGRLLD-MYTQRAIRFDEVSVLVLDEADRMLDMGFIED 167
Query: 190 IEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEK 248
I I++ L + RQNLL SATL+++V LAK ++ + I + K
Sbjct: 168 INNIIEKLPEQ---------------RQNLLFSATLSKQVKALAKTAIPDAIEIEISRK 211
Score = 144 (55.7 bits), Expect = 3.3e-38, Sum P(2) = 3.3e-38
Identities = 29/87 (33%), Positives = 47/87 (54%)
Query: 367 HGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRVGR 426
H Q R FK K L++T V +RG+D ++ +I YD EA +Y+HR+GR
Sbjct: 274 HSGRSQAIREQLLIDFKAGKVPFLVATGVVSRGIDIDALERVINYDLPDEADDYIHRIGR 333
Query: 427 TARLGERGDSLLFLQPVEMDYLQDLEK 453
T R G +G+++ F+ + L +E+
Sbjct: 334 TGRAGNQGEAISFVSKDDFRNLCAIER 360
>TAIR|locus:2162022 [details] [associations]
symbol:AT5G63120 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0000184 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
EMBL:AB008265 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823 EMBL:AY060589
EMBL:BT000610 EMBL:AK226611 EMBL:AJ010476 IPI:IPI00532778
IPI:IPI00537266 PIR:T51349 RefSeq:NP_568964.1 RefSeq:NP_974985.1
UniGene:At.27361 ProteinModelPortal:Q8W4R3 SMR:Q8W4R3 PaxDb:Q8W4R3
PRIDE:Q8W4R3 EnsemblPlants:AT5G63120.2 GeneID:836432
KEGG:ath:AT5G63120 GeneFarm:979 TAIR:At5g63120 InParanoid:Q8W4R3
OMA:FTHANAK PhylomeDB:Q8W4R3 ProtClustDB:CLSN2690069
Genevestigator:Q8W4R3 GermOnline:AT5G63120 Uniprot:Q8W4R3
Length = 591
Score = 299 (110.3 bits), Expect = 4.8e-38, Sum P(2) = 4.8e-38
Identities = 80/220 (36%), Positives = 124/220 (56%)
Query: 36 RLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTF 95
+LGF PT +QAQ P+ L GR ++ A TG+GKT+AYL P + H+ S PR+ + G
Sbjct: 182 KLGFTEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPALVHV-SAQPRLGQDDGPI 240
Query: 96 ALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRL 155
L+L PTREL +Q+ E K R + + GG + + LR+G+ I++ATPGRL
Sbjct: 241 VLILAPTRELAVQIQEESRKFGLR-SGVRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRL 299
Query: 156 LDHLKHTSSFLHTNLR---WIIFDEADRILELGFGKEIEEILD-ILGSRN--IGSIGEGN 209
+D L+ HTNL+ +++ DEADR+L++GF +I +I+ I R + S
Sbjct: 300 IDMLECQ----HTNLKRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLLWSATWPR 355
Query: 210 EVSNVKRQNL------LLSAT---LNEKVNHLAKISLETP 240
EV + RQ L ++ +T N+ +N + +I + TP
Sbjct: 356 EVETLARQFLRDPYKAIIGSTDLKANQSINQVIEI-VPTP 394
Score = 177 (67.4 bits), Expect = 4.8e-38, Sum P(2) = 4.8e-38
Identities = 31/88 (35%), Positives = 50/88 (56%)
Query: 366 LHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRVG 425
+HG+ Q +R FK+ + ++ +TDVAARGLD +KC++ YD +Y+HR+G
Sbjct: 440 IHGDKTQSERDRVLAEFKSGRSPIMTATDVAARGLDVKDIKCVVNYDFPNTLEDYIHRIG 499
Query: 426 RTARLGERGDSLLFLQPVEMDYLQDLEK 453
RT R G +G + F + ++L K
Sbjct: 500 RTGRAGAKGMAFTFFTHDNAKFARELVK 527
Score = 52 (23.4 bits), Expect = 6.7e-11, Sum P(2) = 6.7e-11
Identities = 20/74 (27%), Positives = 34/74 (45%)
Query: 262 LESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQK 321
+E+ ++ + P + +T D K + Q VP + LL++LK L D K
Sbjct: 357 VETLARQFLRDPYKAIIGST-DLKANQSINQVIEIVPTPEKYNRLLTLLKQLMD---GSK 412
Query: 322 LVVFFST---CDAV 332
+++F T CD V
Sbjct: 413 ILIFVETKRGCDQV 426
>UNIPROTKB|F1P0H1 [details] [associations]
symbol:DDX42 "ATP-dependent RNA helicase DDX42"
species:9031 "Gallus gallus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00610000086076 EMBL:AADN02056764
IPI:IPI00819332 Ensembl:ENSGALT00000040437 ArrayExpress:F1P0H1
Uniprot:F1P0H1
Length = 703
Score = 281 (104.0 bits), Expect = 5.2e-38, Sum P(2) = 5.2e-38
Identities = 58/175 (33%), Positives = 103/175 (58%)
Query: 19 SFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPII 78
SF+ G L Q+R+ + PT +Q Q +PV +SGR ++ A TG+GKT A++ P++
Sbjct: 249 SFAHFGFDEQLMHQIRKS-EYTQPTPIQCQGVPVAMSGRDMIGIAKTGSGKTAAFIWPML 307
Query: 79 NHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEK 138
H+ ++ G A+++ PTRELC Q++ + ++ + V GG + ++
Sbjct: 308 IHIMDQK-ELEPGDGPIAVIVCPTRELCQQIHSECKRFGKAYN-LRSVAVYGGGSMWEQA 365
Query: 139 ARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEI 193
L++G I+V TPGRL+DH+K ++ L + +++FDEADR+ ++GF ++ I
Sbjct: 366 KALQEGAEIVVCTPGRLIDHVKKKATNLQ-RVTYLVFDEADRMFDMGFEYQVRSI 419
Score = 201 (75.8 bits), Expect = 5.2e-38, Sum P(2) = 5.2e-38
Identities = 43/116 (37%), Positives = 66/116 (56%)
Query: 366 LHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRVG 425
LHG+M Q +R FK + +L++TDVAARGLD P +K +I YD A + + HR+G
Sbjct: 523 LHGDMDQSERNKVISEFKKKGIPILVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIG 582
Query: 426 RTARLGERGDSLLFLQPVEMDYLQDLEKHGVSLTEYPLLKVLDSFPLYGQKPRVKK 481
RT R GE+G + L P + ++ DL ++ ++ ++LD L Q P +K
Sbjct: 583 RTGRAGEKGVAYTLLTPKDSNFAGDLVRNLEGANQHVSKELLD---LAMQNPWFRK 635
Score = 147 (56.8 bits), Expect = 3.2e-23, Sum P(2) = 3.2e-23
Identities = 40/116 (34%), Positives = 65/116 (56%)
Query: 128 VMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFG 187
V GG + ++ L++G I+V TPGRL+DH+K ++ L + +++FDEADR+ ++GF
Sbjct: 355 VYGGGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKATNLQ-RVTYLVFDEADRMFDMGFE 413
Query: 188 KEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLI 243
++ R+I S V RQ LL SAT +K+ LA+ L P+ +
Sbjct: 414 YQV---------RSIAS-----HV-RPDRQTLLFSATFRKKIEKLARDILIDPIRV 454
>TAIR|locus:2074899 [details] [associations]
symbol:AT3G09620 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0003723 EMBL:AC016661 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K12811 HOGENOM:HOG000007229 IPI:IPI00534330
RefSeq:NP_187573.1 UniGene:At.53239 ProteinModelPortal:Q9SF41
SMR:Q9SF41 PaxDb:Q9SF41 PRIDE:Q9SF41 EnsemblPlants:AT3G09620.1
GeneID:820119 KEGG:ath:AT3G09620 KEGG:dosa:Os08t0154200-01
GeneFarm:1024 TAIR:At3g09620 InParanoid:Q9SF41 OMA:RGRYKVL
PhylomeDB:Q9SF41 ArrayExpress:Q9SF41 Genevestigator:Q9SF41
GermOnline:AT3G09620 Uniprot:Q9SF41
Length = 989
Score = 320 (117.7 bits), Expect = 6.9e-38, Sum P(2) = 6.9e-38
Identities = 84/224 (37%), Positives = 127/224 (56%)
Query: 24 GLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQS 83
GL S + D L+ +L +E P +QAQA+P+I+SGR + A TG+GKT+ ++ P++ H++
Sbjct: 402 GLTSKILDTLK-KLNYEKPMPIQAQALPIIMSGRDCIGVAKTGSGKTLGFVLPMLRHIKD 460
Query: 84 YSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWI-VPGYVMGGENRSKEKARLR 142
P ++ G LV+ PTREL Q+Y + K I VP Y GG +++ + L+
Sbjct: 461 QPP-VEAGDGPIGLVMAPTRELVQQIYSDIRKFSKALGIICVPVY--GGSGVAQQISELK 517
Query: 143 KGISILVATPGRLLDHLKHTSSFLHTNLR---WIIFDEADRILELGFGKEIEEILDILGS 199
+G I+V TPGR++D L TSS TNLR +++ DEADR+ ++GF +I I+
Sbjct: 518 RGTEIVVCTPGRMIDILC-TSSGKITNLRRVTYLVMDEADRMFDMGFEPQITRIV----- 571
Query: 200 RNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLI 243
+NI RQ +L SAT +V LA+ L PV I
Sbjct: 572 QNI----------RPDRQTVLFSATFPRQVETLARKVLNKPVEI 605
Score = 161 (61.7 bits), Expect = 6.9e-38, Sum P(2) = 6.9e-38
Identities = 32/82 (39%), Positives = 52/82 (63%)
Query: 382 FKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRVGRTARLGERGDSLLFLQ 441
FK++ LL++T VAARGLD +++ ++ +D+ +YVHRVGRT R G +G ++ F+
Sbjct: 660 FKSDVCNLLIATSVAARGLDVKELELVVNFDAPNHYEDYVHRVGRTGRAGRKGCAVTFIS 719
Query: 442 PVEMDYLQDLEKHGVSLTEYPL 463
+ Y DL K + L+E P+
Sbjct: 720 EDDAKYAPDLVK-ALELSEQPV 740
>UNIPROTKB|F1P8J6 [details] [associations]
symbol:DDX55 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313
Pfam:PF13959 CTD:57696 KO:K14809 GeneTree:ENSGT00550000074969
EMBL:AAEX03014637 RefSeq:XP_543371.2 Ensembl:ENSCAFT00000011945
GeneID:486246 KEGG:cfa:486246 Uniprot:F1P8J6
Length = 599
Score = 258 (95.9 bits), Expect = 7.6e-38, Sum P(2) = 7.6e-38
Identities = 74/230 (32%), Positives = 116/230 (50%)
Query: 25 LHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSY 84
LH + L + LGF T VQ+ IP+ + + V A TG+GKT+A++ PI+ L
Sbjct: 16 LHPQVLGALGQ-LGFPHMTPVQSATIPLFMKNKDVAAEAVTGSGKTLAFVIPILEILLRR 74
Query: 85 SPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRK- 143
++ ++ A+++ PTREL +QV E+L F +GG N + + +R ++
Sbjct: 75 EEKLKKNQ-VGAIIITPTRELAIQVDEVLAHFTKSFPQFSQILWIGGRNPADDVSRFKEQ 133
Query: 144 GISILVATPGRLLDHLKHTSSFLHT-----NLRWIIFDEADRILELGFGKEIEEILDILG 198
G +I+VATPGRL D + L +L ++ DEADR+L++GF I IL+ L
Sbjct: 134 GGNIIVATPGRLEDMFRRKVEGLDLASCVKSLEVLVLDEADRLLDMGFEASINTILEFLP 193
Query: 199 SRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEK 248
+ R+ L SAT ++V L + L PV I + EK
Sbjct: 194 KQ---------------RRTGLFSATQTQEVESLVRAGLRNPVRISVKEK 228
Score = 222 (83.2 bits), Expect = 7.6e-38, Sum P(2) = 7.6e-38
Identities = 51/143 (35%), Positives = 77/143 (53%)
Query: 310 LKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGN 369
L H +K ++FFSTC V+++ L +K + + C +HG
Sbjct: 258 LVHFLRNHKQEKHLIFFSTCACVEYYGKALEAL-----------VKSVKIMC----IHGK 302
Query: 370 MKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRVGRTAR 429
MK + R F F+ + +L+ TDV ARG+D P+V ++QYD A+ +VHR GRTAR
Sbjct: 303 MKHK-RNKIFMEFRKLQSGILVCTDVMARGIDIPEVNWVLQYDPPSSASAFVHRCGRTAR 361
Query: 430 LGERGDSLLFLQPVEMDYLQDLE 452
+G G +L+FL P+E Y+ LE
Sbjct: 362 IGHGGSALVFLLPMEESYVTFLE 384
>DICTYBASE|DDB_G0275443 [details] [associations]
symbol:helB1 "putative RNA splicing factor"
species:44689 "Dictyostelium discoideum" [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA;ISS] [GO:0005681 "spliceosomal complex"
evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS] [GO:0000375 "RNA splicing, via transesterification
reactions" evidence=ISS] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0275443 GO:GO:0005524
GO:GO:0006397 GenomeReviews:CM000151_GR GO:GO:0005681 GO:GO:0003676
EMBL:AAFI02000013 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GO:GO:0000375 HSSP:P09052 EMBL:X81823 RefSeq:XP_643509.1
ProteinModelPortal:Q553B1 PRIDE:Q553B1 EnsemblProtists:DDB0191329
GeneID:8620090 KEGG:ddi:DDB_G0275443 KO:K12811 OMA:SVVAPEI
ProtClustDB:CLSZ2500419 Uniprot:Q553B1
Length = 1151
Score = 303 (111.7 bits), Expect = 9.9e-38, Sum P(2) = 9.9e-38
Identities = 81/228 (35%), Positives = 129/228 (56%)
Query: 19 SFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPII 78
S++ GL + L ++ +E PT +QAQ IP I++GR ++ A TG+GKT+A+L P+
Sbjct: 510 SWAQAGLTEKV-HLLLKKFQYEKPTSIQAQTIPAIMNGRDLIGIARTGSGKTLAFLLPMF 568
Query: 79 NHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEK 138
H+ + P+ G AL++ PTREL LQ++ + K + + V GG + S++
Sbjct: 569 RHILA-QPKSAPGEGMIALIMSPTRELALQIH-VECKKFSKVLGLRTACVYGGASISEQI 626
Query: 139 ARLRKGISILVATPGRLLDHLKHTSSFLHTNLR---WIIFDEADRILELGFGKEIEEILD 195
A L++G I+V TPGR++D L + + TNLR +++ DEADR+ ++GFG +I I+D
Sbjct: 627 AELKRGADIVVCTPGRMIDILCANNRRI-TNLRRVTFLVLDEADRMFDMGFGPQINCIVD 685
Query: 196 ILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLI 243
SI RQ ++ SAT KV ++AK L P+ I
Sbjct: 686 --------SI-------RPDRQTIMFSATFPPKVENVAKKILNKPLEI 718
Score = 181 (68.8 bits), Expect = 9.9e-38, Sum P(2) = 9.9e-38
Identities = 39/109 (35%), Positives = 62/109 (56%)
Query: 366 LHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRVG 425
LHG+ Q DR T FK + K +L++T +A+RGLD + ++ +D +YVHRVG
Sbjct: 786 LHGSKDQTDRDETISDFKNKVKTILIATPLASRGLDIKDLNLVVNFDCPDHLEDYVHRVG 845
Query: 426 RTARLGERGDSLLFLQPVEMDY----LQDLEKHGVSLTEYPLLKVLDSF 470
RT R G RG + F+ P E + ++ LE+ G + + L K+ D++
Sbjct: 846 RTGRAGNRGTAYTFITPDEERFSSSIIKALEQSGSKVPD-ELRKLNDTY 893
>UNIPROTKB|A4QYM6 [details] [associations]
symbol:DRS1 "ATP-dependent RNA helicase DRS1"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
EMBL:CM001233 GO:GO:0042254 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 KO:K13181 RefSeq:XP_003712922.1
ProteinModelPortal:A4QYM6 STRING:A4QYM6 GeneID:2683645
KEGG:mgr:MGG_07718 OrthoDB:EOG4B01XM Uniprot:A4QYM6
Length = 790
Score = 316 (116.3 bits), Expect = 1.1e-37, Sum P(2) = 1.1e-37
Identities = 81/243 (33%), Positives = 131/243 (53%)
Query: 7 KKETVKEIFASCSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATG 66
K +T K + SF S+ L + L +GF PT +Q++ IP+ L G+ V+ A TG
Sbjct: 247 KSDTNK---GNASFQSMSLSRPILRGLTS-VGFAKPTPIQSKTIPIALMGKDVVGGAVTG 302
Query: 67 TGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPG 126
+GKT A++ PI+ L Y P+ +S ++L PTREL +Q + + KL I
Sbjct: 303 SGKTAAFVVPILERLL-YRPKKVPTSRV--VILAPTRELAIQCHAVATKLASHTD-IKFC 358
Query: 127 YVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGF 186
+GG + +++ LR +++ATPGR +DH+++++SF + ++ DEADR+LE GF
Sbjct: 359 LAVGGLSLKVQESELRLRPDVIIATPGRFIDHMRNSASFAVDTVEILVLDEADRMLEDGF 418
Query: 187 GKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLD 246
E+ EIL L RQ +L SAT+ V++L ++ L PV + +D
Sbjct: 419 ADELNEILTTLPK---------------SRQTMLFSATMTSSVDNLIRVGLNKPVRLMVD 463
Query: 247 EKK 249
+K
Sbjct: 464 SQK 466
Score = 160 (61.4 bits), Expect = 1.1e-37, Sum P(2) = 1.1e-37
Identities = 38/87 (43%), Positives = 51/87 (58%)
Query: 357 LFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGE 416
L L C LHG+M Q R + AF+ K + LL+TD+A+RGLD V +I Y++
Sbjct: 523 LGLSCA--ELHGSMSQIQRIQSVEAFRDGKVSFLLATDLASRGLDIKGVDTVINYEAPQS 580
Query: 417 ATEYVHRVGRTARLGERGDSL-LFLQP 442
YVHRVGRTAR G G ++ L +P
Sbjct: 581 LEIYVHRVGRTARAGRSGTAITLAAEP 607
>WB|WBGene00021277 [details] [associations]
symbol:Y23H5B.6 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0000003 "reproduction" evidence=IMP] [GO:0040035 "hermaphrodite
genitalia development" evidence=IMP] [GO:0040010 "positive
regulation of growth rate" evidence=IMP] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0009792 GO:GO:0040007 GO:GO:0040010 GO:GO:0002119
GO:GO:0003723 GO:GO:0040035 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K14776 InterPro:IPR025313 Pfam:PF13959
HOGENOM:HOG000268801 GeneTree:ENSGT00550000074980 OMA:ADKVIEP
HSSP:P10081 EMBL:FO080963 RefSeq:NP_490989.1
ProteinModelPortal:Q9N478 SMR:Q9N478 STRING:Q9N478 PaxDb:Q9N478
EnsemblMetazoa:Y23H5B.6 GeneID:171810 KEGG:cel:CELE_Y23H5B.6
UCSC:Y23H5B.6 CTD:171810 WormBase:Y23H5B.6 InParanoid:Q9N478
NextBio:872791 Uniprot:Q9N478
Length = 732
Score = 274 (101.5 bits), Expect = 1.5e-37, Sum P(2) = 1.5e-37
Identities = 71/211 (33%), Positives = 114/211 (54%)
Query: 39 FEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHL--QSYSPRIDRSSGTFA 96
+ PT++Q I L+G V+ A TG+GKT+A + P++ L +SP D G A
Sbjct: 96 YTKPTEIQRDTIAYSLTGSDVVGAAKTGSGKTLALVIPVLEALWRAKWSP--DYGLG--A 151
Query: 97 LVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLL 156
L++ PTREL LQ + ++ + H G V+GG + + E+ R+ GI+I+V TPGRLL
Sbjct: 152 LIISPTRELALQTFSTINAV-GAHHGFSCGLVIGGSDVAFERNRI-SGINIIVCTPGRLL 209
Query: 157 DHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKR 216
H+ + +L+ ++ DEADR+L++GF K++ I++ L + +R
Sbjct: 210 QHMDENAQMSCDSLQVLVLDEADRMLDMGFSKQLNSIINNLPA---------------ER 254
Query: 217 QNLLLSATLNEKVNHLAKISLETPVLIGLDE 247
Q LL SAT V L ++ PV + + E
Sbjct: 255 QTLLFSATQTRNVKDLCRVCTNDPVFVSVHE 285
Score = 205 (77.2 bits), Expect = 1.5e-37, Sum P(2) = 1.5e-37
Identities = 41/96 (42%), Positives = 61/96 (63%)
Query: 366 LHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRVG 425
L G M Q+ R TF F K A+L++TDVA+RGLDF + +IQ D + +Y+HRVG
Sbjct: 352 LWGTMNQKKRIETFTKFDESKAAVLIATDVASRGLDFEHIDWVIQVDCPAQIDDYIHRVG 411
Query: 426 RTARLGERGDSLLFLQPVEMD-YLQDLEKHGVSLTE 460
R+AR+ + G+SLL + P + + + LEKH + + E
Sbjct: 412 RSARMDDSGNSLLMVSPSQEEAMIGKLEKHSIPIEE 447
>UNIPROTKB|Q5F485 [details] [associations]
symbol:DDX42 "ATP-dependent RNA helicase DDX42"
species:9031 "Gallus gallus" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008104 "protein
localization" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0008104 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 HSSP:P09052
EMBL:AJ851415 IPI:IPI00576529 RefSeq:NP_001026097.1
UniGene:Gga.5156 ProteinModelPortal:Q5F485 STRING:Q5F485
GeneID:419959 KEGG:gga:419959 CTD:11325 HOGENOM:HOG000268793
HOVERGEN:HBG081425 InParanoid:Q5F485 KO:K12835 OrthoDB:EOG47WNN9
NextBio:20822943 Uniprot:Q5F485
Length = 944
Score = 281 (104.0 bits), Expect = 1.6e-37, Sum P(2) = 1.6e-37
Identities = 58/175 (33%), Positives = 103/175 (58%)
Query: 19 SFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPII 78
SF+ G L Q+R+ + PT +Q Q +PV +SGR ++ A TG+GKT A++ P++
Sbjct: 254 SFARFGFDEQLMHQIRKS-EYTQPTPIQCQGVPVAMSGRDMIGIAKTGSGKTAAFIWPML 312
Query: 79 NHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEK 138
H+ ++ G A+++ PTRELC Q++ + ++ + V GG + ++
Sbjct: 313 IHIMDQK-ELEPGDGPIAVIVCPTRELCQQIHSECKRFGKAYN-LRSVAVYGGGSMWEQA 370
Query: 139 ARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEI 193
L++G I+V TPGRL+DH+K ++ L + +++FDEADR+ ++GF ++ I
Sbjct: 371 KALQEGAEIVVCTPGRLIDHVKKKATNLQ-RVTYLVFDEADRMFDMGFEYQVRSI 424
Score = 201 (75.8 bits), Expect = 1.6e-37, Sum P(2) = 1.6e-37
Identities = 43/116 (37%), Positives = 66/116 (56%)
Query: 366 LHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRVG 425
LHG+M Q +R FK + +L++TDVAARGLD P +K +I YD A + + HR+G
Sbjct: 528 LHGDMDQSERNKVISEFKKKGIPILVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIG 587
Query: 426 RTARLGERGDSLLFLQPVEMDYLQDLEKHGVSLTEYPLLKVLDSFPLYGQKPRVKK 481
RT R GE+G + L P + ++ DL ++ ++ ++LD L Q P +K
Sbjct: 588 RTGRAGEKGVAYTLLTPKDSNFAGDLVRNLEGANQHVSKELLD---LAMQNPWFRK 640
Score = 147 (56.8 bits), Expect = 7.8e-23, Sum P(2) = 7.8e-23
Identities = 40/116 (34%), Positives = 65/116 (56%)
Query: 128 VMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFG 187
V GG + ++ L++G I+V TPGRL+DH+K ++ L + +++FDEADR+ ++GF
Sbjct: 360 VYGGGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKATNLQ-RVTYLVFDEADRMFDMGFE 418
Query: 188 KEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLI 243
++ R+I S V RQ LL SAT +K+ LA+ L P+ +
Sbjct: 419 YQV---------RSIAS-----HV-RPDRQTLLFSATFRKKIEKLARDILIDPIRV 459
>UNIPROTKB|F1NJ40 [details] [associations]
symbol:DDX42 "ATP-dependent RNA helicase DDX42"
species:9031 "Gallus gallus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0008104 "protein localization" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0008104 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 IPI:IPI00576529 OMA:QGVNNTA
GeneTree:ENSGT00610000086076 EMBL:AADN02056764
Ensembl:ENSGALT00000000811 ArrayExpress:F1NJ40 Uniprot:F1NJ40
Length = 946
Score = 281 (104.0 bits), Expect = 1.6e-37, Sum P(2) = 1.6e-37
Identities = 58/175 (33%), Positives = 103/175 (58%)
Query: 19 SFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPII 78
SF+ G L Q+R+ + PT +Q Q +PV +SGR ++ A TG+GKT A++ P++
Sbjct: 256 SFAHFGFDEQLMHQIRKS-EYTQPTPIQCQGVPVAMSGRDMIGIAKTGSGKTAAFIWPML 314
Query: 79 NHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEK 138
H+ ++ G A+++ PTRELC Q++ + ++ + V GG + ++
Sbjct: 315 IHIMDQK-ELEPGDGPIAVIVCPTRELCQQIHSECKRFGKAYN-LRSVAVYGGGSMWEQA 372
Query: 139 ARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEI 193
L++G I+V TPGRL+DH+K ++ L + +++FDEADR+ ++GF ++ I
Sbjct: 373 KALQEGAEIVVCTPGRLIDHVKKKATNLQ-RVTYLVFDEADRMFDMGFEYQVRSI 426
Score = 201 (75.8 bits), Expect = 1.6e-37, Sum P(2) = 1.6e-37
Identities = 43/116 (37%), Positives = 66/116 (56%)
Query: 366 LHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRVG 425
LHG+M Q +R FK + +L++TDVAARGLD P +K +I YD A + + HR+G
Sbjct: 530 LHGDMDQSERNKVISEFKKKGIPILVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIG 589
Query: 426 RTARLGERGDSLLFLQPVEMDYLQDLEKHGVSLTEYPLLKVLDSFPLYGQKPRVKK 481
RT R GE+G + L P + ++ DL ++ ++ ++LD L Q P +K
Sbjct: 590 RTGRAGEKGVAYTLLTPKDSNFAGDLVRNLEGANQHVSKELLD---LAMQNPWFRK 642
Score = 147 (56.8 bits), Expect = 7.8e-23, Sum P(2) = 7.8e-23
Identities = 40/116 (34%), Positives = 65/116 (56%)
Query: 128 VMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFG 187
V GG + ++ L++G I+V TPGRL+DH+K ++ L + +++FDEADR+ ++GF
Sbjct: 362 VYGGGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKATNLQ-RVTYLVFDEADRMFDMGFE 420
Query: 188 KEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLI 243
++ R+I S V RQ LL SAT +K+ LA+ L P+ +
Sbjct: 421 YQV---------RSIAS-----HV-RPDRQTLLFSATFRKKIEKLARDILIDPIRV 461
>TIGR_CMR|SO_4034 [details] [associations]
symbol:SO_4034 "ATP-dependent RNA helicase DeaD"
species:211586 "Shewanella oneidensis MR-1" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0009631 "cold
acclimation" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:AE014299 GenomeReviews:AE014299_GR InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268810 KO:K05592 InterPro:IPR005580
Pfam:PF03880 HSSP:P10081 OMA:LPQGMPK RefSeq:NP_719564.1
ProteinModelPortal:Q8EA75 GeneID:1171660 KEGG:son:SO_4034
PATRIC:23527732 ProtClustDB:CLSK907463 Uniprot:Q8EA75
Length = 623
Score = 290 (107.1 bits), Expect = 1.8e-37, Sum P(3) = 1.8e-37
Identities = 77/227 (33%), Positives = 128/227 (56%)
Query: 19 SFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPII 78
+F LGL L L E LG+E PT +Q+ +I +++G+ +L A TGTGKT A+ P++
Sbjct: 7 TFRELGLSENLLRALDE-LGYEKPTPIQSASIDPLMAGKDILGQAQTGTGKTGAFALPLL 65
Query: 79 NHLQSYS-PRIDRSSGTFALVLVPTRELCLQVYEILH---KLLHRFHWIVPGYVMGGENR 134
N + S + P+I LVL PTREL +QV E K + FH ++P Y GG++
Sbjct: 66 NKVTSQTTPQI--------LVLAPTRELAVQVAEAFSSYAKFMKNFH-VLPIY--GGQSM 114
Query: 135 SKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEIL 194
++ L++G ++V TPGR++DH++ + L T L+ ++ DEAD +L++GF +IE IL
Sbjct: 115 QQQLNALKRGPQVIVGTPGRVMDHMRRGTLKLET-LQALVLDEADEMLKMGFIDDIEWIL 173
Query: 195 DILG-SRNIG--SIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLE 238
+ R + S ++ V ++L + ++ +H S+E
Sbjct: 174 EHTPPQRQLALFSATMPEQIKRVANKHLKNATNISIAASHTTVDSIE 220
Score = 181 (68.8 bits), Expect = 1.8e-37, Sum P(3) = 1.8e-37
Identities = 36/88 (40%), Positives = 53/88 (60%)
Query: 366 LHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRVG 425
LHG+M Q+ R K K +L++TDVAARGLD ++ ++ YD + YVHR+G
Sbjct: 274 LHGDMNQQARERAVEQLKNGKLDILIATDVAARGLDVERIGHVVNYDIPYDTEAYVHRIG 333
Query: 426 RTARLGERGDSLLFLQPVEMDYLQDLEK 453
RT R G G ++LF+ EM L+ +E+
Sbjct: 334 RTGRAGRTGMAILFVTSREMRMLRTIER 361
Score = 166 (63.5 bits), Expect = 5.7e-23, Sum P(3) = 5.7e-23
Identities = 52/173 (30%), Positives = 83/173 (47%)
Query: 97 LVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLL 156
LVL PTREL +QV E + GG++ ++ L++G ++V TPGR++
Sbjct: 77 LVLAPTRELAVQVAEAFSSYAKFMKNFHVLPIYGGQSMQQQLNALKRGPQVIVGTPGRVM 136
Query: 157 DHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKR 216
DH++ + L T L+ ++ DEAD +L++GF +IE IL E + +R
Sbjct: 137 DHMRRGTLKLET-LQALVLDEADEMLKMGFIDDIEWIL---------------EHTPPQR 180
Query: 217 QNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLPEDKSHVRFGSLESDVKEE 269
Q L SAT+ E++ +A L+ I + D RF + K E
Sbjct: 181 QLALFSATMPEQIKRVANKHLKNATNISIAASHTTVDSIEQRFVQVSQHNKLE 233
Score = 40 (19.1 bits), Expect = 1.8e-37, Sum P(3) = 1.8e-37
Identities = 10/37 (27%), Positives = 22/37 (59%)
Query: 292 QRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFST 328
QR+V+V ++L L+ +L + E ++ +++F T
Sbjct: 221 QRFVQVSQHNKLEALVRVL----EVENTEGIIIFVRT 253
>DICTYBASE|DDB_G0288501 [details] [associations]
symbol:ddx42 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
dictyBase:DDB_G0288501 GO:GO:0005524 GO:GO:0005634
GenomeReviews:CM000154_GR GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:AAFI02000112 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 HSSP:P09052
KO:K12835 RefSeq:XP_636700.1 ProteinModelPortal:Q54IV3
STRING:Q54IV3 EnsemblProtists:DDB0233432 GeneID:8626657
KEGG:ddi:DDB_G0288501 OMA:DRDKRGG Uniprot:Q54IV3
Length = 986
Score = 290 (107.1 bits), Expect = 1.8e-37, Sum P(2) = 1.8e-37
Identities = 63/178 (35%), Positives = 106/178 (59%)
Query: 19 SFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPII 78
SF G L + ++ E PT +Q QAIP+ LSGR ++ A TG+GKT ++ P I
Sbjct: 306 SFGHYGFDDILLQAIAKQ-SIETPTPIQKQAIPIALSGRDLIAIAKTGSGKTATFIWPSI 364
Query: 79 NHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVM-GGENRSKE 137
+H+ P +++ G AL L PTREL Q+Y L L + ++ + V+ GG ++ ++
Sbjct: 365 SHIMD-QPYLEKGDGPIALFLAPTRELAHQIY--LETLKYSKYFKLKTTVLYGGVSKQQQ 421
Query: 138 KARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILD 195
L+ G I+VATPGRL+D +K ++ L+ + +++ DEAD++ + GFG ++ I++
Sbjct: 422 CKELKAGCEIIVATPGRLIDMIKLKATKLN-RVSYLVLDEADKMFDFGFGPQVLSIVN 478
Score = 191 (72.3 bits), Expect = 1.8e-37, Sum P(2) = 1.8e-37
Identities = 38/107 (35%), Positives = 64/107 (59%)
Query: 362 KTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYV 421
+T LHG+ Q +R T FK K +L++TDVAARGLD P +K ++ YD++ + +
Sbjct: 576 QTCTLHGDKNQIERSQTIQTFKEGKINILIATDVAARGLDIPLIKNVVNYDTSRDIESHT 635
Query: 422 HRVGRTARLGERGDSLLFLQPVEMDYLQDLEKHGVSLTEYPLLKVLD 468
HR+GRT R G G + + P ++ + DL K+ S +++ +++D
Sbjct: 636 HRIGRTGRAGNTGVAYTLITPKDIHFSVDLIKNLESASQFVPPELID 682
Score = 141 (54.7 bits), Expect = 4.8e-21, Sum P(2) = 4.8e-21
Identities = 37/116 (31%), Positives = 61/116 (52%)
Query: 130 GGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKE 189
GG ++ ++ L+ G I+VATPGRL+D +K ++ L+ + +++ DEAD++ + GFG +
Sbjct: 414 GGVSKQQQCKELKAGCEIIVATPGRLIDMIKLKATKLN-RVSYLVLDEADKMFDFGFGPQ 472
Query: 190 IEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGL 245
+ I+ N V RQ LL SAT V A+ L P+ I +
Sbjct: 473 VLSIV--------------NHV-RPDRQTLLFSATFKPNVEEFARTILSDPIKISI 513
>MGI|MGI:1919297 [details] [associations]
symbol:Ddx42 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 42"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005737 "cytoplasm"
evidence=ISO] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008104 "protein localization" evidence=ISO]
[GO:0016787 "hydrolase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:1919297
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0008104
GO:GO:0016607 GO:GO:0003723 GO:GO:0015030 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 EMBL:AL604045 HSSP:P09052
CTD:11325 HOGENOM:HOG000268793 HOVERGEN:HBG081425 KO:K12835
OrthoDB:EOG47WNN9 OMA:QGVNNTA ChiTaRS:DDX42 EMBL:AK007805
EMBL:AK049311 EMBL:AK169816 EMBL:AK171730 EMBL:BC043036
IPI:IPI00329839 IPI:IPI00830514 RefSeq:NP_082350.3 UniGene:Mm.41367
ProteinModelPortal:Q810A7 SMR:Q810A7 IntAct:Q810A7 STRING:Q810A7
PhosphoSite:Q810A7 PaxDb:Q810A7 PRIDE:Q810A7
Ensembl:ENSMUST00000021046 GeneID:72047 KEGG:mmu:72047
UCSC:uc007lyk.2 UCSC:uc007lyl.2 GeneTree:ENSGT00610000086076
InParanoid:Q810A7 NextBio:335308 Bgee:Q810A7 CleanEx:MM_DDX42
Genevestigator:Q810A7 Uniprot:Q810A7
Length = 929
Score = 282 (104.3 bits), Expect = 1.8e-37, Sum P(2) = 1.8e-37
Identities = 59/175 (33%), Positives = 103/175 (58%)
Query: 19 SFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPII 78
SF+ G L Q+R+ + PT +Q Q +PV LSGR ++ A TG+GKT A++ P++
Sbjct: 254 SFAHFGFDEQLMHQIRKS-EYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPML 312
Query: 79 NHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEK 138
H+ ++ G A+++ PTRELC Q++ + ++ + V GG + ++
Sbjct: 313 IHIMDQK-ELEPGDGPIAVIVCPTRELCQQIHAECKRFGKAYN-LRSVAVYGGGSMWEQA 370
Query: 139 ARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEI 193
L++G I+V TPGRL+DH+K ++ L + +++FDEADR+ ++GF ++ I
Sbjct: 371 KALQEGAEIVVCTPGRLIDHVKKKATNLQ-RVSYLVFDEADRMFDMGFEYQVRSI 424
Score = 199 (75.1 bits), Expect = 1.8e-37, Sum P(2) = 1.8e-37
Identities = 39/103 (37%), Positives = 61/103 (59%)
Query: 366 LHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRVG 425
LHG+M Q +R FK + +L++TDVAARGLD P +K +I YD A + + HR+G
Sbjct: 528 LHGDMDQSERNKVISDFKKKDIPVLVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIG 587
Query: 426 RTARLGERGDSLLFLQPVEMDYLQDLEKHGVSLTEYPLLKVLD 468
RT R GE+G + L P + ++ DL ++ ++ ++LD
Sbjct: 588 RTGRAGEKGVAYTLLTPKDSNFAGDLVRNLEGANQHVSKELLD 630
Score = 147 (56.8 bits), Expect = 1.2e-22, Sum P(2) = 1.2e-22
Identities = 40/116 (34%), Positives = 65/116 (56%)
Query: 128 VMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFG 187
V GG + ++ L++G I+V TPGRL+DH+K ++ L + +++FDEADR+ ++GF
Sbjct: 360 VYGGGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKATNLQ-RVSYLVFDEADRMFDMGFE 418
Query: 188 KEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLI 243
++ R+I S V RQ LL SAT +K+ LA+ L P+ +
Sbjct: 419 YQV---------RSIAS-----HV-RPDRQTLLFSATFRKKIEKLARDILIDPIRV 459
Score = 37 (18.1 bits), Expect = 3.4e-11, Sum P(2) = 3.4e-11
Identities = 6/16 (37%), Positives = 11/16 (68%)
Query: 108 QVYEILHKLLHRFHWI 123
Q+ EILH +++W+
Sbjct: 473 QIVEILHSGPSKWNWL 488
>UNIPROTKB|E2RFF1 [details] [associations]
symbol:DDX42 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008104 "protein localization" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0008104 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 OMA:QGVNNTA
GeneTree:ENSGT00610000086076 EMBL:AAEX03006359
Ensembl:ENSCAFT00000020366 Uniprot:E2RFF1
Length = 933
Score = 282 (104.3 bits), Expect = 1.8e-37, Sum P(2) = 1.8e-37
Identities = 59/175 (33%), Positives = 103/175 (58%)
Query: 19 SFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPII 78
SF+ G L Q+R+ + PT +Q Q +PV LSGR ++ A TG+GKT A++ P++
Sbjct: 254 SFAHFGFDEQLMHQIRKS-EYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPML 312
Query: 79 NHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEK 138
H+ ++ G A+++ PTRELC Q++ + ++ + V GG + ++
Sbjct: 313 IHIMDQK-ELEPGDGPIAVIVCPTRELCQQIHAECKRFGKAYN-LRSVAVYGGGSMWEQA 370
Query: 139 ARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEI 193
L++G I+V TPGRL+DH+K ++ L + +++FDEADR+ ++GF ++ I
Sbjct: 371 KALQEGAEIVVCTPGRLIDHVKKKATNLQ-RVSYLVFDEADRMFDMGFEYQVRSI 424
Score = 199 (75.1 bits), Expect = 1.8e-37, Sum P(2) = 1.8e-37
Identities = 39/103 (37%), Positives = 61/103 (59%)
Query: 366 LHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRVG 425
LHG+M Q +R FK + +L++TDVAARGLD P +K +I YD A + + HR+G
Sbjct: 528 LHGDMDQSERNKVISDFKKKDIPVLVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIG 587
Query: 426 RTARLGERGDSLLFLQPVEMDYLQDLEKHGVSLTEYPLLKVLD 468
RT R GE+G + L P + ++ DL ++ ++ ++LD
Sbjct: 588 RTGRAGEKGVAYTLLTPKDSNFAGDLVRNLEGANQHVSKELLD 630
Score = 147 (56.8 bits), Expect = 1.3e-22, Sum P(2) = 1.3e-22
Identities = 40/116 (34%), Positives = 65/116 (56%)
Query: 128 VMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFG 187
V GG + ++ L++G I+V TPGRL+DH+K ++ L + +++FDEADR+ ++GF
Sbjct: 360 VYGGGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKATNLQ-RVSYLVFDEADRMFDMGFE 418
Query: 188 KEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLI 243
++ R+I S V RQ LL SAT +K+ LA+ L P+ +
Sbjct: 419 YQV---------RSIAS-----HV-RPDRQTLLFSATFRKKIEKLARDILIDPIRV 459
Score = 37 (18.1 bits), Expect = 3.5e-11, Sum P(2) = 3.5e-11
Identities = 6/16 (37%), Positives = 11/16 (68%)
Query: 108 QVYEILHKLLHRFHWI 123
Q+ EILH +++W+
Sbjct: 473 QIVEILHSGPSKWNWL 488
>UNIPROTKB|Q86XP3 [details] [associations]
symbol:DDX42 "ATP-dependent RNA helicase DDX42"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0015030 "Cajal body"
evidence=IEA] [GO:0016607 "nuclear speck" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0008104 "protein
localization" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 EMBL:AF083255 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0008104 GO:GO:0016607 GO:GO:0003723
EMBL:CH471109 GO:GO:0015030 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HSSP:P09052 CTD:11325 HOVERGEN:HBG081425 KO:K12835
OrthoDB:EOG47WNN9 EMBL:AB036090 EMBL:AK292908 EMBL:AC015651
EMBL:BC008208 EMBL:BC015505 EMBL:BC078667 EMBL:BC093081
EMBL:AL050096 EMBL:BK000566 IPI:IPI00409671 IPI:IPI00829889
PIR:T08745 RefSeq:NP_031398.2 RefSeq:NP_987095.1 UniGene:Hs.702010
ProteinModelPortal:Q86XP3 SMR:Q86XP3 IntAct:Q86XP3
MINT:MINT-1427725 STRING:Q86XP3 PhosphoSite:Q86XP3 DMDM:74750541
PaxDb:Q86XP3 PRIDE:Q86XP3 Ensembl:ENST00000359353
Ensembl:ENST00000389924 Ensembl:ENST00000457800
Ensembl:ENST00000578681 Ensembl:ENST00000583590 GeneID:11325
KEGG:hsa:11325 UCSC:uc002jbu.3 GeneCards:GC17P061851
HGNC:HGNC:18676 HPA:HPA023447 HPA:HPA023571 HPA:HPA025941
MIM:613369 neXtProt:NX_Q86XP3 PharmGKB:PA134875761
InParanoid:Q86XP3 OMA:QGVNNTA ChiTaRS:DDX42 GenomeRNAi:11325
NextBio:43019 ArrayExpress:Q86XP3 Bgee:Q86XP3 CleanEx:HS_DDX42
Genevestigator:Q86XP3 Uniprot:Q86XP3
Length = 938
Score = 282 (104.3 bits), Expect = 1.9e-37, Sum P(2) = 1.9e-37
Identities = 59/175 (33%), Positives = 103/175 (58%)
Query: 19 SFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPII 78
SF+ G L Q+R+ + PT +Q Q +PV LSGR ++ A TG+GKT A++ P++
Sbjct: 254 SFAHFGFDEQLMHQIRKS-EYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPML 312
Query: 79 NHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEK 138
H+ ++ G A+++ PTRELC Q++ + ++ + V GG + ++
Sbjct: 313 IHIMDQK-ELEPGDGPIAVIVCPTRELCQQIHAECKRFGKAYN-LRSVAVYGGGSMWEQA 370
Query: 139 ARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEI 193
L++G I+V TPGRL+DH+K ++ L + +++FDEADR+ ++GF ++ I
Sbjct: 371 KALQEGAEIVVCTPGRLIDHVKKKATNLQ-RVSYLVFDEADRMFDMGFEYQVRSI 424
Score = 199 (75.1 bits), Expect = 1.9e-37, Sum P(2) = 1.9e-37
Identities = 39/103 (37%), Positives = 61/103 (59%)
Query: 366 LHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRVG 425
LHG+M Q +R FK + +L++TDVAARGLD P +K +I YD A + + HR+G
Sbjct: 528 LHGDMDQSERNKVISDFKKKDIPVLVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIG 587
Query: 426 RTARLGERGDSLLFLQPVEMDYLQDLEKHGVSLTEYPLLKVLD 468
RT R GE+G + L P + ++ DL ++ ++ ++LD
Sbjct: 588 RTGRAGEKGVAYTLLTPKDSNFAGDLVRNLEGANQHVSKELLD 630
Score = 147 (56.8 bits), Expect = 1.3e-22, Sum P(2) = 1.3e-22
Identities = 40/116 (34%), Positives = 65/116 (56%)
Query: 128 VMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFG 187
V GG + ++ L++G I+V TPGRL+DH+K ++ L + +++FDEADR+ ++GF
Sbjct: 360 VYGGGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKATNLQ-RVSYLVFDEADRMFDMGFE 418
Query: 188 KEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLI 243
++ R+I S V RQ LL SAT +K+ LA+ L P+ +
Sbjct: 419 YQV---------RSIAS-----HV-RPDRQTLLFSATFRKKIEKLARDILIDPIRV 459
Score = 37 (18.1 bits), Expect = 3.5e-11, Sum P(2) = 3.5e-11
Identities = 6/16 (37%), Positives = 11/16 (68%)
Query: 108 QVYEILHKLLHRFHWI 123
Q+ EILH +++W+
Sbjct: 473 QIVEILHSGPSKWNWL 488
>UNIPROTKB|F1RSJ7 [details] [associations]
symbol:DDX42 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0008104 "protein localization" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0008104 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 OMA:QGVNNTA
GeneTree:ENSGT00610000086076 EMBL:CU466402 EMBL:CU466386
Ensembl:ENSSSCT00000018821 Uniprot:F1RSJ7
Length = 941
Score = 282 (104.3 bits), Expect = 1.9e-37, Sum P(2) = 1.9e-37
Identities = 59/175 (33%), Positives = 103/175 (58%)
Query: 19 SFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPII 78
SF+ G L Q+R+ + PT +Q Q +PV LSGR ++ A TG+GKT A++ P++
Sbjct: 254 SFAHFGFDEQLMHQIRKS-EYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPML 312
Query: 79 NHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEK 138
H+ ++ G A+++ PTRELC Q++ + ++ + V GG + ++
Sbjct: 313 IHIMDQK-ELEPGDGPIAVIVCPTRELCQQIHAECKRFGKAYN-LRSVAVYGGGSMWEQA 370
Query: 139 ARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEI 193
L++G I+V TPGRL+DH+K ++ L + +++FDEADR+ ++GF ++ I
Sbjct: 371 KALQEGAEIVVCTPGRLIDHVKKKATNLQ-RVSYLVFDEADRMFDMGFEYQVRSI 424
Score = 199 (75.1 bits), Expect = 1.9e-37, Sum P(2) = 1.9e-37
Identities = 39/103 (37%), Positives = 61/103 (59%)
Query: 366 LHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRVG 425
LHG+M Q +R FK + +L++TDVAARGLD P +K +I YD A + + HR+G
Sbjct: 528 LHGDMDQSERNKVISDFKKKDIPVLVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIG 587
Query: 426 RTARLGERGDSLLFLQPVEMDYLQDLEKHGVSLTEYPLLKVLD 468
RT R GE+G + L P + ++ DL ++ ++ ++LD
Sbjct: 588 RTGRAGEKGVAYTLLTPKDSNFAGDLVRNLEGANQHVSKELLD 630
Score = 147 (56.8 bits), Expect = 1.3e-22, Sum P(2) = 1.3e-22
Identities = 40/116 (34%), Positives = 65/116 (56%)
Query: 128 VMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFG 187
V GG + ++ L++G I+V TPGRL+DH+K ++ L + +++FDEADR+ ++GF
Sbjct: 360 VYGGGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKATNLQ-RVSYLVFDEADRMFDMGFE 418
Query: 188 KEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLI 243
++ R+I S V RQ LL SAT +K+ LA+ L P+ +
Sbjct: 419 YQV---------RSIAS-----HV-RPDRQTLLFSATFRKKIEKLARDILIDPIRV 459
Score = 37 (18.1 bits), Expect = 3.5e-11, Sum P(2) = 3.5e-11
Identities = 6/16 (37%), Positives = 11/16 (68%)
Query: 108 QVYEILHKLLHRFHWI 123
Q+ EILH +++W+
Sbjct: 473 QIVEILHSGPSKWNWL 488
>UNIPROTKB|E1BJD2 [details] [associations]
symbol:DDX42 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0008104 "protein localization" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0008104 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 OMA:QGVNNTA
GeneTree:ENSGT00610000086076 EMBL:DAAA02049325 IPI:IPI00701280
Ensembl:ENSBTAT00000028046 Uniprot:E1BJD2
Length = 946
Score = 282 (104.3 bits), Expect = 1.9e-37, Sum P(2) = 1.9e-37
Identities = 59/175 (33%), Positives = 103/175 (58%)
Query: 19 SFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPII 78
SF+ G L Q+R+ + PT +Q Q +PV LSGR ++ A TG+GKT A++ P++
Sbjct: 254 SFAHFGFDEQLMHQIRKS-EYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPML 312
Query: 79 NHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEK 138
H+ ++ G A+++ PTRELC Q++ + ++ + V GG + ++
Sbjct: 313 IHIMDQK-ELEPGDGPIAVIVCPTRELCQQIHAECKRFGKAYN-LRSVAVYGGGSMWEQA 370
Query: 139 ARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEI 193
L++G I+V TPGRL+DH+K ++ L + +++FDEADR+ ++GF ++ I
Sbjct: 371 KALQEGAEIVVCTPGRLIDHVKKKATNLQ-RVSYLVFDEADRMFDMGFEYQVRSI 424
Score = 199 (75.1 bits), Expect = 1.9e-37, Sum P(2) = 1.9e-37
Identities = 39/103 (37%), Positives = 61/103 (59%)
Query: 366 LHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRVG 425
LHG+M Q +R FK + +L++TDVAARGLD P +K +I YD A + + HR+G
Sbjct: 527 LHGDMDQSERNKVISDFKKKDIPVLVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIG 586
Query: 426 RTARLGERGDSLLFLQPVEMDYLQDLEKHGVSLTEYPLLKVLD 468
RT R GE+G + L P + ++ DL ++ ++ ++LD
Sbjct: 587 RTGRAGEKGVAYTLLTPKDSNFAGDLVRNLEGANQHVSKELLD 629
Score = 147 (56.8 bits), Expect = 1.3e-22, Sum P(2) = 1.3e-22
Identities = 40/116 (34%), Positives = 65/116 (56%)
Query: 128 VMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFG 187
V GG + ++ L++G I+V TPGRL+DH+K ++ L + +++FDEADR+ ++GF
Sbjct: 360 VYGGGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKATNLQ-RVSYLVFDEADRMFDMGFE 418
Query: 188 KEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLI 243
++ R+I S V RQ LL SAT +K+ LA+ L P+ +
Sbjct: 419 YQV---------RSIAS-----HV-RPDRQTLLFSATFRKKIEKLARDILIDPIRV 459
>POMBASE|SPCC10H11.01 [details] [associations]
symbol:prp11 "ATP-dependent RNA helicase Prp11"
species:4896 "Schizosaccharomyces pombe" [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=ISO] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005681
"spliceosomal complex" evidence=ISO] [GO:0005829 "cytosol"
evidence=IDA] [GO:0044732 "mitotic spindle pole body" evidence=IDA]
[GO:0045292 "mRNA cis splicing, via spliceosome" evidence=ISO]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 PomBase:SPCC10H11.01 GO:GO:0005829 GO:GO:0005524
EMBL:CU329672 GenomeReviews:CU329672_GR GO:GO:0044732 GO:GO:0005681
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 GO:GO:0045292 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K12811 HOGENOM:HOG000007229 EMBL:AB027964
RefSeq:NP_587856.1 ProteinModelPortal:Q9P7C7 DIP:DIP-59804N
IntAct:Q9P7C7 PRIDE:Q9P7C7 EnsemblFungi:SPCC10H11.01.1
GeneID:2538936 KEGG:spo:SPCC10H11.01 OMA:SLVIIYN OrthoDB:EOG40CMR1
NextBio:20800113 Uniprot:Q9P7C7
Length = 1014
Score = 297 (109.6 bits), Expect = 2.1e-37, Sum P(2) = 2.1e-37
Identities = 80/228 (35%), Positives = 121/228 (53%)
Query: 19 SFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPII 78
S+S GL + + LG+E PT +QAQAIP I SGR V+ A TG+GKT+A+L P+
Sbjct: 419 SWSQCGLSAQTISVINS-LGYEKPTSIQAQAIPAITSGRDVIGVAKTGSGKTIAFLLPMF 477
Query: 79 NHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEK 138
H++ P + G A+++ PTREL +Q++ L + I GG +
Sbjct: 478 RHIKDQRP-LKTGEGPIAIIMTPTRELAVQIFRECKPFLKLLN-IRACCAYGGAPIKDQI 535
Query: 139 ARLRKGISILVATPGRLLDHLKHTSSFLHTNLR---WIIFDEADRILELGFGKEIEEILD 195
A L++G I+V TPGR++D L + + TNL +++ DEADR+ +LGF ++ I++
Sbjct: 536 ADLKRGAEIVVCTPGRMIDVLSANAGRV-TNLHRCTYLVLDEADRMFDLGFEPQVMRIIN 594
Query: 196 ILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLI 243
NI RQ +L SAT + LA+ L+ PV I
Sbjct: 595 -----NI----------RPDRQTVLFSATFPRAMEALARKVLKKPVEI 627
Score = 183 (69.5 bits), Expect = 2.1e-37, Sum P(2) = 2.1e-37
Identities = 41/120 (34%), Positives = 63/120 (52%)
Query: 351 DMELKQLFLRCKTFR-LHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCII 409
D L L R T +HG Q DR +T +K +L++T V ARGLD ++ ++
Sbjct: 682 DALLSDLMKRGYTSNSIHGGKDQHDRDSTISDYKAGVFDVLIATSVVARGLDVKSLQLVV 741
Query: 410 QYDSAGEATEYVHRVGRTARLGERGDSLLFLQPVEMDYLQDLEKHGVSLTEYPLLKVLDS 469
YD +YVHRVGRT R G G ++ F+ P + Y D+ K + +++ P+ K L +
Sbjct: 742 NYDCPNHMEDYVHRVGRTGRAGHTGVAVTFITPEQEKYAVDIAK-ALKMSKQPVPKELQT 800
Score = 54 (24.1 bits), Expect = 4.2e-11, Sum P(2) = 4.2e-11
Identities = 42/174 (24%), Positives = 84/174 (48%)
Query: 179 DRILELGFGKEIE-----EILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLA 233
D+I +L G EI ++D+L S N G V+N+ R L+ L+E + +
Sbjct: 533 DQIADLKRGAEIVVCTPGRMIDVL-SANAG------RVTNLHRCTYLV---LDE-ADRMF 581
Query: 234 KISLETPVLIGLDEKKLPEDKSHVRFGS-----LESDVKEEVEHPSTTMRSTTEDFKLPA 288
+ E V+ ++ + P D+ V F + +E+ ++ ++ P + T + A
Sbjct: 582 DLGFEPQVMRIINNIR-P-DRQTVLFSATFPRAMEALARKVLKKP---VEITVGGRSVVA 636
Query: 289 QLVQRYVKV-PCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSE 341
V++ V+V P S+ + LL +L L++ ++ + +VF ++ D +LLS+
Sbjct: 637 SEVEQIVEVRPEESKFSRLLELLGELYNNQLDVRTLVFVDRQESAD---ALLSD 687
Score = 45 (20.9 bits), Expect = 5.8e-23, Sum P(2) = 5.8e-23
Identities = 14/39 (35%), Positives = 19/39 (48%)
Query: 245 LDEKKLPEDKSHVR-FGSLESDVKEEVEHPSTTMRSTTE 282
LDE + E K + +G E DV+ E E S + T E
Sbjct: 829 LDETRNAERKMQRKAYGEDEEDVETEAEAKSPLEKITPE 867
>UNIPROTKB|Q5R7D1 [details] [associations]
symbol:DDX42 "ATP-dependent RNA helicase DDX42"
species:9601 "Pongo abelii" [GO:0005634 "nucleus" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0008104 "protein
localization" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0008104 GO:GO:0016607 GO:GO:0003723
GO:GO:0015030 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 HSSP:P09052
CTD:11325 HOVERGEN:HBG081425 KO:K12835 EMBL:CR860187
RefSeq:NP_001126368.1 UniGene:Pab.3212 ProteinModelPortal:Q5R7D1
GeneID:100173349 KEGG:pon:100173349 Uniprot:Q5R7D1
Length = 942
Score = 281 (104.0 bits), Expect = 2.5e-37, Sum P(2) = 2.5e-37
Identities = 60/175 (34%), Positives = 103/175 (58%)
Query: 19 SFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPII 78
SF+ G L Q+R+ + PT +Q Q +PV LSGR ++ A TG+GKT A++ P++
Sbjct: 254 SFAHFGFDEQLMHQIRKS-EYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPML 312
Query: 79 NHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEK 138
H+ ++ G A+++ PTRELC Q++ K + + + V GG + ++
Sbjct: 313 IHIMDQK-ELEPGDGPIAVIVCPTRELCQQIHAE-GKRFGKAYNLRSVAVYGGGSMWEQA 370
Query: 139 ARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEI 193
L++G I+V TPGRL+DH+K ++ L + +++FDEADR+ ++GF ++ I
Sbjct: 371 KALQEGAEIVVCTPGRLIDHVKKKATNLQ-RVSYLVFDEADRMFDMGFEYQVRSI 424
Score = 199 (75.1 bits), Expect = 2.5e-37, Sum P(2) = 2.5e-37
Identities = 39/103 (37%), Positives = 61/103 (59%)
Query: 366 LHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRVG 425
LHG+M Q +R FK + +L++TDVAARGLD P +K +I YD A + + HR+G
Sbjct: 528 LHGDMDQSERNKVISDFKKKDIPVLVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIG 587
Query: 426 RTARLGERGDSLLFLQPVEMDYLQDLEKHGVSLTEYPLLKVLD 468
RT R GE+G + L P + ++ DL ++ ++ ++LD
Sbjct: 588 RTGRAGEKGVAYTLLTPKDSNFAGDLVRNLEGANQHVSKELLD 630
Score = 147 (56.8 bits), Expect = 1.3e-22, Sum P(2) = 1.3e-22
Identities = 40/116 (34%), Positives = 65/116 (56%)
Query: 128 VMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFG 187
V GG + ++ L++G I+V TPGRL+DH+K ++ L + +++FDEADR+ ++GF
Sbjct: 360 VYGGGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKATNLQ-RVSYLVFDEADRMFDMGFE 418
Query: 188 KEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLI 243
++ R+I S V RQ LL SAT +K+ LA+ L P+ +
Sbjct: 419 YQV---------RSIAS-----HV-RPDRQTLLFSATFRKKIEKLARDILIDPIRV 459
Score = 37 (18.1 bits), Expect = 3.6e-11, Sum P(2) = 3.6e-11
Identities = 6/16 (37%), Positives = 11/16 (68%)
Query: 108 QVYEILHKLLHRFHWI 123
Q+ EILH +++W+
Sbjct: 473 QIVEILHSGPSKWNWL 488
>TIGR_CMR|CPS_3401 [details] [associations]
symbol:CPS_3401 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_270076.1 ProteinModelPortal:Q47YP4
STRING:Q47YP4 GeneID:3521057 KEGG:cps:CPS_3401 PATRIC:21469753
OMA:HLIKEHQ ProtClustDB:CLSK907013
BioCyc:CPSY167879:GI48-3430-MONOMER Uniprot:Q47YP4
Length = 432
Score = 297 (109.6 bits), Expect = 2.6e-37, Sum P(3) = 2.6e-37
Identities = 84/231 (36%), Positives = 123/231 (53%)
Query: 19 SFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPII 78
+F+ LGL + L +L E L + PT +QA+AIP + +GR ++ A TG+GKT + P++
Sbjct: 9 TFTELGLITPLLARLAE-LEYHQPTPIQARAIPSVFAGRDLIAGANTGSGKTATFALPML 67
Query: 79 NHL-QSYSPRIDRSSGTFA--LVLVPTRELCLQVYEILHKLLHRFHWIVPGY-VMGGENR 134
L + S S G F LVLVPTREL QV + + F+ + V GG +
Sbjct: 68 QKLREDISSGSKNSKGNFVTGLVLVPTRELAKQVADSIKSYAVHFNGEIKTLAVFGGVSV 127
Query: 135 SKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEIL 194
+ + LR G+ ILVATPGRLLD + + L ++ ++ DEADR+L LGF +E+ +L
Sbjct: 128 NIQMLALRGGVDILVATPGRLLDLISSNAIKLD-KVKTLVLDEADRMLSLGFTEELTALL 186
Query: 195 DILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGL 245
+ K+Q LL SAT E+V L + L P+ I L
Sbjct: 187 ALTPK---------------KKQTLLFSATFPEQVTTLTQELLNNPIEIQL 222
Score = 147 (56.8 bits), Expect = 2.6e-37, Sum P(3) = 2.6e-37
Identities = 28/87 (32%), Positives = 49/87 (56%)
Query: 367 HGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRVGR 426
HG+ Q +R FK +L++TD+AARGLD K+ +I ++ ++Y+HR+GR
Sbjct: 286 HGDKGQSERSRVLDGFKAGDIEVLIATDIAARGLDIEKLPVVINFNLPRSPSDYMHRIGR 345
Query: 427 TARLGERGDSLLFLQPVEMDYLQDLEK 453
+ R GE G ++ + + + +EK
Sbjct: 346 SGRAGEVGLAISLIDHEDYHHFSVIEK 372
Score = 39 (18.8 bits), Expect = 2.6e-37, Sum P(3) = 2.6e-37
Identities = 13/36 (36%), Positives = 18/36 (50%)
Query: 290 LVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVF 325
LVQR V G + AVL HL E ++ ++F
Sbjct: 230 LVQRVFTVNKGEKTAVLA----HLIQQEQWRQALIF 261
>RGD|1304909 [details] [associations]
symbol:Ddx42 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 42"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0005737 "cytoplasm"
evidence=IEA;ISO] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008104 "protein localization" evidence=IEA;ISO]
[GO:0005730 "nucleolus" evidence=ISO] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 RGD:1304909
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0008104
GO:GO:0003676 EMBL:CH473948 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
CTD:11325 KO:K12835 OrthoDB:EOG47WNN9 GeneTree:ENSGT00610000086076
IPI:IPI00361283 RefSeq:NP_001100529.1 UniGene:Rn.154550
Ensembl:ENSRNOT00000013046 GeneID:303607 KEGG:rno:303607
UCSC:RGD:1304909 NextBio:651732 Uniprot:D4A031
Length = 929
Score = 282 (104.3 bits), Expect = 4.8e-37, Sum P(2) = 4.8e-37
Identities = 59/175 (33%), Positives = 103/175 (58%)
Query: 19 SFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPII 78
SF+ G L Q+R+ + PT +Q Q +PV LSGR ++ A TG+GKT A++ P++
Sbjct: 254 SFAHFGFDEQLMHQIRKS-EYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPML 312
Query: 79 NHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEK 138
H+ ++ G A+++ PTRELC Q++ + ++ + V GG + ++
Sbjct: 313 IHIMDQK-ELEPGDGPIAVIVCPTRELCQQIHAECKRFGKAYN-LRSVAVYGGGSMWEQA 370
Query: 139 ARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEI 193
L++G I+V TPGRL+DH+K ++ L + +++FDEADR+ ++GF ++ I
Sbjct: 371 KALQEGAEIVVCTPGRLIDHVKKKATNLQ-RVSYLVFDEADRMFDMGFEYQVRSI 424
Score = 195 (73.7 bits), Expect = 4.8e-37, Sum P(2) = 4.8e-37
Identities = 39/103 (37%), Positives = 61/103 (59%)
Query: 366 LHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRVG 425
LHG+M Q +R FK + +L++TDVAARGLD P +K +I YD A + + HR+G
Sbjct: 528 LHGDMDQSERNKVILDFKKKDIPVLVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIG 587
Query: 426 RTARLGERGDSLLFLQPVEMDYLQDLEKHGVSLTEYPLLKVLD 468
RT R GE+G + L P + ++ DL ++ ++ ++LD
Sbjct: 588 RTGRAGEKGVAYTLLTPKDSNFAGDLVRNLEGANQHVSKELLD 630
Score = 147 (56.8 bits), Expect = 3.4e-22, Sum P(2) = 3.4e-22
Identities = 40/116 (34%), Positives = 65/116 (56%)
Query: 128 VMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFG 187
V GG + ++ L++G I+V TPGRL+DH+K ++ L + +++FDEADR+ ++GF
Sbjct: 360 VYGGGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKATNLQ-RVSYLVFDEADRMFDMGFE 418
Query: 188 KEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLI 243
++ R+I S V RQ LL SAT +K+ LA+ L P+ +
Sbjct: 419 YQV---------RSIAS-----HV-RPDRQTLLFSATFRKKIEKLARDILIDPIRV 459
Score = 37 (18.1 bits), Expect = 9.4e-11, Sum P(2) = 9.4e-11
Identities = 6/16 (37%), Positives = 11/16 (68%)
Query: 108 QVYEILHKLLHRFHWI 123
Q+ EILH +++W+
Sbjct: 473 QIVEILHSGPSKWNWL 488
>GENEDB_PFALCIPARUM|PFB0860c [details] [associations]
symbol:PFB0860c "RNA helicase, putative"
species:5833 "Plasmodium falciparum" [GO:0004004 "ATP-dependent RNA
helicase activity" evidence=ISS] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 EMBL:AE001362
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268802 HSSP:P10081
KO:K14777 PIR:C71604 RefSeq:XP_001349688.1
ProteinModelPortal:O96264 EnsemblProtists:PFB0860c:mRNA
GeneID:812770 KEGG:pfa:PFB0860c EuPathDB:PlasmoDB:PF3D7_0218400
OMA:KHRAKRV ProtClustDB:CLSZ2432676 Uniprot:O96264
Length = 562
Score = 270 (100.1 bits), Expect = 5.5e-37, Sum P(2) = 5.5e-37
Identities = 71/231 (30%), Positives = 123/231 (53%)
Query: 19 SFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPII 78
+F L + + + ++E LG++ PT++Q + +P + ++ + TG+GKT ++ PI+
Sbjct: 157 TFEDLNICEEILESIKE-LGWKKPTEIQREILPHAFLKKDIIGLSETGSGKTACFIIPIL 215
Query: 79 NHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKL-LHRFHWIVPGYVMGGENRSKE 137
L ++++ S +ALV+ PTRELC+Q+ + L ++ I Y GG + +
Sbjct: 216 QDL-----KVNKQS-FYALVISPTRELCIQISQNFQALGMNLLINICTIY--GGVDIVTQ 267
Query: 138 KARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDIL 197
L K +++V+TPGR+LDHL +T F NL++++FDEAD++L F I ++L IL
Sbjct: 268 SLNLAKKPNVIVSTPGRILDHLNNTKGFNLKNLKYLVFDEADKLLSQDFESSINKLLLIL 327
Query: 198 GSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEK 248
I L SAT+ + V L K L+ PV + + K
Sbjct: 328 PPNRI---------------TFLFSATMTKNVAKLKKACLKNPVKVEVSNK 363
Score = 199 (75.1 bits), Expect = 5.5e-37, Sum P(2) = 5.5e-37
Identities = 55/183 (30%), Positives = 87/183 (47%)
Query: 274 STTMRSTTEDFKLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVD 333
S TM T KL ++ VKV ++ + + ++++ + K S C
Sbjct: 337 SATM--TKNVAKLKKACLKNPVKVEVSNKYSTVSTLIETYIFLPLKYKYTYLSSLC---- 390
Query: 334 FHYSLLSEFQWSPHSQPDMELKQLFLR---CKTFRLHGNMKQEDRRTTFGAFKTEKKALL 390
FHY + ++ +L F R K+ LHG + Q R ++ +FK K +L
Sbjct: 391 FHYQTRNIIIFTNTCATAQKLN-FFCRNLGLKSICLHGKLTQNQRLSSLNSFKVNKYNIL 449
Query: 391 LSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRVGRTARLGERGDSLLFLQPVEMDYLQD 450
+ST V ARGLD +K +I +D EY+HRVGRTAR G G S+ F+ +++
Sbjct: 450 ISTQVGARGLDLQDIKIVINFDICS-CKEYIHRVGRTARAGRSGKSITFVTQYDVENFLA 508
Query: 451 LEK 453
+EK
Sbjct: 509 IEK 511
>UNIPROTKB|O96264 [details] [associations]
symbol:PFB0860c "DEAD/DEAH box helicase, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
EMBL:AE001362 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268802 HSSP:P10081 KO:K14777 PIR:C71604
RefSeq:XP_001349688.1 ProteinModelPortal:O96264
EnsemblProtists:PFB0860c:mRNA GeneID:812770 KEGG:pfa:PFB0860c
EuPathDB:PlasmoDB:PF3D7_0218400 OMA:KHRAKRV ProtClustDB:CLSZ2432676
Uniprot:O96264
Length = 562
Score = 270 (100.1 bits), Expect = 5.5e-37, Sum P(2) = 5.5e-37
Identities = 71/231 (30%), Positives = 123/231 (53%)
Query: 19 SFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPII 78
+F L + + + ++E LG++ PT++Q + +P + ++ + TG+GKT ++ PI+
Sbjct: 157 TFEDLNICEEILESIKE-LGWKKPTEIQREILPHAFLKKDIIGLSETGSGKTACFIIPIL 215
Query: 79 NHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKL-LHRFHWIVPGYVMGGENRSKE 137
L ++++ S +ALV+ PTRELC+Q+ + L ++ I Y GG + +
Sbjct: 216 QDL-----KVNKQS-FYALVISPTRELCIQISQNFQALGMNLLINICTIY--GGVDIVTQ 267
Query: 138 KARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDIL 197
L K +++V+TPGR+LDHL +T F NL++++FDEAD++L F I ++L IL
Sbjct: 268 SLNLAKKPNVIVSTPGRILDHLNNTKGFNLKNLKYLVFDEADKLLSQDFESSINKLLLIL 327
Query: 198 GSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEK 248
I L SAT+ + V L K L+ PV + + K
Sbjct: 328 PPNRI---------------TFLFSATMTKNVAKLKKACLKNPVKVEVSNK 363
Score = 199 (75.1 bits), Expect = 5.5e-37, Sum P(2) = 5.5e-37
Identities = 55/183 (30%), Positives = 87/183 (47%)
Query: 274 STTMRSTTEDFKLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVD 333
S TM T KL ++ VKV ++ + + ++++ + K S C
Sbjct: 337 SATM--TKNVAKLKKACLKNPVKVEVSNKYSTVSTLIETYIFLPLKYKYTYLSSLC---- 390
Query: 334 FHYSLLSEFQWSPHSQPDMELKQLFLR---CKTFRLHGNMKQEDRRTTFGAFKTEKKALL 390
FHY + ++ +L F R K+ LHG + Q R ++ +FK K +L
Sbjct: 391 FHYQTRNIIIFTNTCATAQKLN-FFCRNLGLKSICLHGKLTQNQRLSSLNSFKVNKYNIL 449
Query: 391 LSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRVGRTARLGERGDSLLFLQPVEMDYLQD 450
+ST V ARGLD +K +I +D EY+HRVGRTAR G G S+ F+ +++
Sbjct: 450 ISTQVGARGLDLQDIKIVINFDICS-CKEYIHRVGRTARAGRSGKSITFVTQYDVENFLA 508
Query: 451 LEK 453
+EK
Sbjct: 509 IEK 511
>FB|FBgn0263231 [details] [associations]
symbol:bel "belle" species:7227 "Drosophila melanogaster"
[GO:0007286 "spermatid development" evidence=IMP] [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS;IMP] [GO:0005524
"ATP binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0043186 "P granule" evidence=IDA] [GO:0007283
"spermatogenesis" evidence=IMP] [GO:0002168 "instar larval
development" evidence=IMP] [GO:0048477 "oogenesis" evidence=IMP]
[GO:0016442 "RNA-induced silencing complex" evidence=IDA]
[GO:0016246 "RNA interference" evidence=IMP] [GO:0005811 "lipid
particle" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0005875 "microtubule associated complex" evidence=IDA]
[GO:0043025 "neuronal cell body" evidence=IDA] [GO:0010468
"regulation of gene expression" evidence=IMP] [GO:0000070 "mitotic
sister chromatid segregation" evidence=IMP] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 EMBL:AE014297
GO:GO:0005524 GO:GO:0005875 GO:GO:0016246 GO:GO:0007286
GO:GO:0005811 GO:GO:0043025 GO:GO:0048477 GO:GO:0003723
GO:GO:0000070 GO:GO:0016442 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 GO:GO:0002168 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043186
GeneTree:ENSGT00620000087942 KO:K11594 HSSP:P09052 EMBL:AY089613
RefSeq:NP_536783.1 UniGene:Dm.7823 ProteinModelPortal:Q9VHP0
SMR:Q9VHP0 IntAct:Q9VHP0 STRING:Q9VHP0 PaxDb:Q9VHP0 PRIDE:Q9VHP0
EnsemblMetazoa:FBtr0081888 GeneID:45826 KEGG:dme:Dmel_CG9748
UCSC:CG9748-RA CTD:100035747 FlyBase:FBgn0263231 InParanoid:Q9VHP0
OMA:TILWVYE OrthoDB:EOG4DNCKG PhylomeDB:Q9VHP0 GenomeRNAi:45826
NextBio:838377 Bgee:Q9VHP0 Uniprot:Q9VHP0
Length = 798
Score = 301 (111.0 bits), Expect = 6.6e-37, Sum P(2) = 6.6e-37
Identities = 76/216 (35%), Positives = 117/216 (54%)
Query: 39 FEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHL---------QSYSPRID 89
++ PT VQ AIP+I++GR ++ A TG+GKT A+L PI+N + QS
Sbjct: 315 YDKPTPVQKHAIPIIINGRDLMACAQTGSGKTAAFLVPILNQMYELGHVPPPQSTRQYSR 374
Query: 90 RSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILV 149
R LVL PTREL Q++E K +R + P + GG N S++ L +G ++V
Sbjct: 375 RKQYPLGLVLAPTRELATQIFEEAKKFAYRSR-MRPAVLYGGNNTSEQMRELDRGCHLIV 433
Query: 150 ATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILGSRNIGSIGEGN 209
ATPGRL D + L N+R+++ DEADR+L++GF +I I++ L N+ G+
Sbjct: 434 ATPGRLEDMITRGKVGLE-NIRFLVLDEADRMLDMGFEPQIRRIVEQL---NMPPTGQ-- 487
Query: 210 EVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGL 245
RQ L+ SAT +++ LA L + + +
Sbjct: 488 ------RQTLMFSATFPKQIQELASDFLSNYIFLAV 517
Score = 170 (64.9 bits), Expect = 6.6e-37, Sum P(2) = 6.6e-37
Identities = 35/100 (35%), Positives = 54/100 (54%)
Query: 354 LKQLFLRCK--TFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQY 411
L++ +C +HG+ Q++R F++ +L++T VAARGLD P VK +I +
Sbjct: 575 LEEFLYQCNHPVTSIHGDRTQKEREEALRCFRSGDCPILVATAVAARGLDIPHVKHVINF 634
Query: 412 DSAGEATEYVHRVGRTARLGERGDSLLFLQPVEMDYLQDL 451
D + EYVHR+GRT R+G G + F + DL
Sbjct: 635 DLPSDVEEYVHRIGRTGRMGNLGVATSFFNEKNRNICSDL 674
>CGD|CAL0001091 [details] [associations]
symbol:orf19.672 species:5476 "Candida albicans" [GO:0005682
"U5 snRNP" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 CGD:CAL0001091 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0008380 GO:GO:0006397
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K12858 EMBL:AACQ01000117 EMBL:AACQ01000116 RefSeq:XP_713805.1
RefSeq:XP_713845.1 ProteinModelPortal:Q59W52 GeneID:3644491
GeneID:3644552 KEGG:cal:CaO19.672 KEGG:cal:CaO19.8289
Uniprot:Q59W52
Length = 581
Score = 289 (106.8 bits), Expect = 7.2e-37, Sum P(2) = 7.2e-37
Identities = 83/294 (28%), Positives = 159/294 (54%)
Query: 36 RLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSP---RIDR-S 91
+LG+E PT VQ +IP+ L R V+ A TG+GKT+A+L P++N++ S + ++ S
Sbjct: 185 QLGYEEPTSVQRASIPLALKKRDVVGVAETGSGKTLAFLIPVLNYILSIDENYLKYEKIS 244
Query: 92 SGTFALVLVPTRELCLQVYEILHKLLHRFHW-IVPGYVMGGENRSKEKARL-RKGISILV 149
+ L+L PTREL LQ+ + K + + ++P ++GG + ++ + G+ ++V
Sbjct: 245 NEPVGLILAPTRELALQITKEAEKFCKKLGYQVLP--IIGGHHYQDTINKIDQTGVHLIV 302
Query: 150 ATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILGS-RNIGSIGEG 208
ATPGRL+D ++ L + ++ DEADR++++GF K++ ++LD L + + + S +G
Sbjct: 303 ATPGRLVDSIERKIVDL-SKCYCLVMDEADRMIDMGFEKDLNKVLDKLPTEKQLSSTIDG 361
Query: 209 NEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLPEDKSHVRFGSLESDVKE 268
KR ++ +AT++ V L K L P + + G ++ +
Sbjct: 362 RIFHLEKRSTMMFTATISPTVEKLTKKYLIDPGYLYIGGA-----------GEALDNISQ 410
Query: 269 EVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKL 322
E S+ T+ KL ++++ + +V + L ++ + KH+ D+ +SQ+L
Sbjct: 411 SFEFLSSATTEATKFNKL-IKIIRSHWRVT-ENPLIIIFANFKHVCDS-LSQEL 461
Score = 177 (67.4 bits), Expect = 7.2e-37, Sum P(2) = 7.2e-37
Identities = 32/88 (36%), Positives = 50/88 (56%)
Query: 366 LHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRVG 425
+HG+ Q+ R F+ + +L++TDVAARG+D P V +I Y + EY+HR+G
Sbjct: 471 IHGSKSQDMREQAITNFRNHESEVLIATDVAARGIDIPNVTLVINYQMVKKFDEYIHRIG 530
Query: 426 RTARLGERGDSLLFLQPVEMDYLQDLEK 453
RT R G G+S F+ + + L+K
Sbjct: 531 RTGRAGNLGESFTFISDQDTEIFTPLKK 558
>UNIPROTKB|Q59W52 [details] [associations]
symbol:PRP28 "Pre-mRNA-splicing ATP-dependent RNA helicase
PRP28" species:237561 "Candida albicans SC5314" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 CGD:CAL0001091
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0008380
GO:GO:0006397 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K12858 EMBL:AACQ01000117 EMBL:AACQ01000116
RefSeq:XP_713805.1 RefSeq:XP_713845.1 ProteinModelPortal:Q59W52
GeneID:3644491 GeneID:3644552 KEGG:cal:CaO19.672
KEGG:cal:CaO19.8289 Uniprot:Q59W52
Length = 581
Score = 289 (106.8 bits), Expect = 7.2e-37, Sum P(2) = 7.2e-37
Identities = 83/294 (28%), Positives = 159/294 (54%)
Query: 36 RLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSP---RIDR-S 91
+LG+E PT VQ +IP+ L R V+ A TG+GKT+A+L P++N++ S + ++ S
Sbjct: 185 QLGYEEPTSVQRASIPLALKKRDVVGVAETGSGKTLAFLIPVLNYILSIDENYLKYEKIS 244
Query: 92 SGTFALVLVPTRELCLQVYEILHKLLHRFHW-IVPGYVMGGENRSKEKARL-RKGISILV 149
+ L+L PTREL LQ+ + K + + ++P ++GG + ++ + G+ ++V
Sbjct: 245 NEPVGLILAPTRELALQITKEAEKFCKKLGYQVLP--IIGGHHYQDTINKIDQTGVHLIV 302
Query: 150 ATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILGS-RNIGSIGEG 208
ATPGRL+D ++ L + ++ DEADR++++GF K++ ++LD L + + + S +G
Sbjct: 303 ATPGRLVDSIERKIVDL-SKCYCLVMDEADRMIDMGFEKDLNKVLDKLPTEKQLSSTIDG 361
Query: 209 NEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLPEDKSHVRFGSLESDVKE 268
KR ++ +AT++ V L K L P + + G ++ +
Sbjct: 362 RIFHLEKRSTMMFTATISPTVEKLTKKYLIDPGYLYIGGA-----------GEALDNISQ 410
Query: 269 EVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKL 322
E S+ T+ KL ++++ + +V + L ++ + KH+ D+ +SQ+L
Sbjct: 411 SFEFLSSATTEATKFNKL-IKIIRSHWRVT-ENPLIIIFANFKHVCDS-LSQEL 461
Score = 177 (67.4 bits), Expect = 7.2e-37, Sum P(2) = 7.2e-37
Identities = 32/88 (36%), Positives = 50/88 (56%)
Query: 366 LHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRVG 425
+HG+ Q+ R F+ + +L++TDVAARG+D P V +I Y + EY+HR+G
Sbjct: 471 IHGSKSQDMREQAITNFRNHESEVLIATDVAARGIDIPNVTLVINYQMVKKFDEYIHRIG 530
Query: 426 RTARLGERGDSLLFLQPVEMDYLQDLEK 453
RT R G G+S F+ + + L+K
Sbjct: 531 RTGRAGNLGESFTFISDQDTEIFTPLKK 558
>TIGR_CMR|SO_1383 [details] [associations]
symbol:SO_1383 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:AE014299
GenomeReviews:AE014299_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
HSSP:Q58083 HOGENOM:HOG000268807 RefSeq:NP_717003.1
ProteinModelPortal:Q8EH47 GeneID:1169204 KEGG:son:SO_1383
PATRIC:23522420 OMA:SEVVHGE ProtClustDB:CLSK906234 Uniprot:Q8EH47
Length = 433
Score = 278 (102.9 bits), Expect = 1.0e-36, Sum P(3) = 1.0e-36
Identities = 65/179 (36%), Positives = 102/179 (56%)
Query: 38 GFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFAL 97
G++ T +Q QAIP I G+ VL +A TGTGKT A+ PI+ + +P S T L
Sbjct: 20 GYQKMTPIQQQAIPAIRRGQDVLASAQTGTGKTAAFALPILQKMVE-NPSETLKSNTRVL 78
Query: 98 VLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLD 157
+L PTREL QV E + ++ V + GG + +L++G I+VATPGRLL+
Sbjct: 79 ILTPTRELAAQVAENVEAYSKYLNFSVLT-IYGGVKVETQAQKLKRGADIIVATPGRLLE 137
Query: 158 HLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKR 216
HL + L +++ +++ DEADR+L++GF +I++IL + + + S VK+
Sbjct: 138 HLTACNLSL-SSVDFLVLDEADRMLDMGFSADIQKILQAVNKKRQNLLFSATFSSAVKK 195
Score = 174 (66.3 bits), Expect = 1.9e-23, Sum P(3) = 1.9e-23
Identities = 44/126 (34%), Positives = 70/126 (55%)
Query: 128 VMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFG 187
+ GG + +L++G I+VATPGRLL+HL + L +++ +++ DEADR+L++GF
Sbjct: 108 IYGGVKVETQAQKLKRGADIIVATPGRLLEHLTACNLSL-SSVDFLVLDEADRMLDMGFS 166
Query: 188 KEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDE 247
+I++IL + N KRQNLL SAT + V LA + P +I D+
Sbjct: 167 ADIQKILQAV---------------NKKRQNLLFSATFSSAVKKLANEMMIKPQVISADK 211
Query: 248 KKLPED 253
+ D
Sbjct: 212 QNTTAD 217
Score = 172 (65.6 bits), Expect = 1.0e-36, Sum P(3) = 1.0e-36
Identities = 35/88 (39%), Positives = 53/88 (60%)
Query: 366 LHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRVG 425
+HG Q RR F + K +L++T+VAARGLD P ++ ++ +D A +YVHR+G
Sbjct: 274 VHGEKAQGSRRRALREFVSGKVRVLVATEVAARGLDIPSLEYVVNFDLPFLAEDYVHRIG 333
Query: 426 RTARLGERGDSLLFLQPVEMDYLQDLEK 453
RT R G+ G ++ F+ E L D+EK
Sbjct: 334 RTGRAGKSGVAISFVSREEERTLADIEK 361
Score = 39 (18.8 bits), Expect = 1.3e-09, Sum P(3) = 1.3e-09
Identities = 7/16 (43%), Positives = 13/16 (81%)
Query: 266 VKEEVEHPSTTMRSTT 281
+++ VE+PS T++S T
Sbjct: 60 LQKMVENPSETLKSNT 75
Score = 38 (18.4 bits), Expect = 1.0e-36, Sum P(3) = 1.0e-36
Identities = 9/25 (36%), Positives = 15/25 (60%)
Query: 309 ILKHLFDTEVSQKLVVFFSTCDAVD 333
+L L + Q+++VF +T DA D
Sbjct: 234 LLSELIGKKNWQQVLVFTATRDAAD 258
>POMBASE|SPBC543.06c [details] [associations]
symbol:dbp8 "ATP-dependent RNA helicase Dbp8
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISO] [GO:0005524 "ATP binding" evidence=ISM]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=ISO;IDA] [GO:0006364 "rRNA processing" evidence=ISO]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 PomBase:SPBC543.06c GO:GO:0005524 GO:GO:0005730
EMBL:CU329671 GenomeReviews:CU329671_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K14778 HOGENOM:HOG000268802 OMA:EVRTVEQ OrthoDB:EOG4PP1RW
RefSeq:NP_596794.1 ProteinModelPortal:Q9HGM5 STRING:Q9HGM5
EnsemblFungi:SPBC543.06c.1 GeneID:2541069 KEGG:spo:SPBC543.06c
NextBio:20802183 Uniprot:Q9HGM5
Length = 453
Score = 242 (90.2 bits), Expect = 1.1e-36, Sum P(3) = 1.1e-36
Identities = 65/182 (35%), Positives = 96/182 (52%)
Query: 19 SFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPII 78
SFS LG+ L D L+ +E PT +Q I IL GR+ + A TG+GKT A+ PII
Sbjct: 8 SFSDLGISPWLIDTLKALAIYE-PTDIQEGVIAQILEGRNCIGGAKTGSGKTAAFALPII 66
Query: 79 NHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEK 138
S P SG FAL+L PTREL +Q+ E L + + ++GG + ++
Sbjct: 67 EKW-SKDP-----SGIFALILTPTRELAIQIDEQFAALGANLN-LKHALIVGGMDMIRQS 119
Query: 139 ARLRKGISILVATPGRLLDHLKHTSSFLHTNLR---WIIFDEADRILELGFGKEIEEILD 195
L K ++VATPGRL D ++ LR +++ DEADR+L F ++++
Sbjct: 120 IDLSKRPHVVVATPGRLADLIRSNGEETIAGLRRIKFLVMDEADRLLSPTFADDLDDCFS 179
Query: 196 IL 197
+L
Sbjct: 180 VL 181
Score = 207 (77.9 bits), Expect = 1.1e-36, Sum P(3) = 1.1e-36
Identities = 40/104 (38%), Positives = 62/104 (59%)
Query: 359 LRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEAT 418
L + LH M Q +R + G F+ E +L++TDVA+RGLD P V+ +I +D +
Sbjct: 281 LELRVTELHSEMVQRERINSLGRFRAEAAKILVATDVASRGLDIPSVQLVINFDLPRDPD 340
Query: 419 EYVHRVGRTARLGERGDSLLFLQPVEMDYLQDLEKH-GVSLTEY 461
+Y+HRVGRTAR G G+S+ + ++D + +E G L+EY
Sbjct: 341 DYIHRVGRTARAGRSGESISIVTERDVDLVHAIEDRVGTKLSEY 384
Score = 52 (23.4 bits), Expect = 1.1e-36, Sum P(3) = 1.1e-36
Identities = 14/59 (23%), Positives = 27/59 (45%)
Query: 281 TEDFKLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLL 339
T++ +P+ L Q Y+ V R A L+ +L + ++F + + YS+L
Sbjct: 222 TDNISVPSTLQQSYIFVSSQVREAYLVHLLT--IPENAKKSAIIFVNRTRTAELIYSIL 278
>ASPGD|ASPL0000055571 [details] [associations]
symbol:AN1266 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0044732 "mitotic spindle pole body" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0008380
EMBL:BN001308 GO:GO:0006397 GO:GO:0003676 EMBL:AACD01000017
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K12811
OMA:SVVAPEI HOGENOM:HOG000007229 OrthoDB:EOG40CMR1
RefSeq:XP_658870.1 ProteinModelPortal:Q5BDW4
EnsemblFungi:CADANIAT00001356 GeneID:2877043 KEGG:ani:AN1266.2
Uniprot:Q5BDW4
Length = 1173
Score = 297 (109.6 bits), Expect = 1.4e-36, Sum P(2) = 1.4e-36
Identities = 79/228 (34%), Positives = 124/228 (54%)
Query: 20 FSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIIN 79
+S GL D + ++LGF + T +QAQAIP I+SGR V+ A TG+GKT+A+L P+
Sbjct: 543 WSQCGLGIQTLDVI-DKLGFASLTSIQAQAIPAIMSGRDVIGVAKTGSGKTMAFLIPMFR 601
Query: 80 HLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHW-IVPGYVMGGENRSKEK 138
H++ P ++ G L++ PTREL Q+++ L + V Y GG +
Sbjct: 602 HIKDQRP-LENMEGPIGLIMTPTRELATQIHKDCKPFLKALNLRAVCAY--GGAPIKDQI 658
Query: 139 ARLRKGISILVATPGRLLDHLKHTSSFLHTNLR---WIIFDEADRILELGFGKEIEEILD 195
A L++G I+V TPGR++D L + + TNLR +++ DEADR+ ++GF ++ +IL
Sbjct: 659 AELKRGAEIIVCTPGRMIDLLAANAGRV-TNLRRVTYVVLDEADRMFDMGFEPQVMKILS 717
Query: 196 ILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLI 243
N+ RQ +L SAT + LA+ +L P+ I
Sbjct: 718 -----NV----------RPDRQTVLFSATFPRNMEALARKTLTKPIEI 750
Score = 177 (67.4 bits), Expect = 1.4e-36, Sum P(2) = 1.4e-36
Identities = 42/108 (38%), Positives = 60/108 (55%)
Query: 366 LHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRVG 425
+HG Q DR +T FK +L++T VAARGLD ++K ++ YD+ +YVHR G
Sbjct: 823 IHGGKDQIDRDSTIEDFKAGIFPVLIATSVAARGLDVKQLKLVVNYDAPNHLEDYVHRAG 882
Query: 426 RTARLGERGDSLLFLQPVEMDYLQDLEKH-GVSLTEYP--LLKVLDSF 470
RT R G G ++ FL + Y D+ K S E P + K++DSF
Sbjct: 883 RTGRAGNTGTAVTFLTEDQERYSVDIAKALKQSGQEVPEAVQKLVDSF 930
>CGD|CAL0004436 [details] [associations]
symbol:MSS116 species:5476 "Candida albicans" [GO:0005759
"mitochondrial matrix" evidence=IEA] [GO:0000373 "Group II intron
splicing" evidence=IEA] [GO:0034337 "RNA folding" evidence=IEA]
[GO:0000372 "Group I intron splicing" evidence=IEA] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=IEA] [GO:0033592
"RNA strand annealing activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 CGD:CAL0004436 GO:GO:0005524
GO:GO:0006417 GO:GO:0008380 GO:GO:0005759 GO:GO:0006397
GO:GO:0003723 EMBL:AACQ01000001 EMBL:AACQ01000002
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
RefSeq:XP_723235.1 RefSeq:XP_723426.1 ProteinModelPortal:Q5APM7
GeneID:3634792 GeneID:3635042 KEGG:cal:CaO19.12201
KEGG:cal:CaO19.4739 Uniprot:Q5APM7
Length = 668
Score = 257 (95.5 bits), Expect = 1.4e-36, Sum P(2) = 1.4e-36
Identities = 77/243 (31%), Positives = 121/243 (49%)
Query: 264 SDVKEEVEHPSTTMRSTT--EDFKLPAQLVQRYVKVPCG-SRLAVLLSILKHLFDTEVSQ 320
S+ ++ HP +T +D ++P + Q+ ++ G ++ V LS L +
Sbjct: 287 SEFSKKHIHPEYEFLNTVTKDDLEIPENIHQQLIECTDGIDKVNVSLSELHGIMKQHNDY 346
Query: 321 KLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRC-KTFRLHGNMKQEDRRTTF 379
K++VF T AVD+ Y ++ + D EL +LF + + F LHG R
Sbjct: 347 KVIVFLPTKTAVDWFYEYIT-------NALDDELFELFSKPPRVFMLHGGRSVRQRSAAL 399
Query: 380 GAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRVGRTARLGERGDSLLF 439
FK KK +L+STDVAARG+D V +IQ + E +Y+H+VGRT R G++G + LF
Sbjct: 400 KGFKVAKKGILISTDVAARGIDVKDVTNVIQMFPSVEIADYIHKVGRTGRAGKKGKASLF 459
Query: 440 LQPVEMDYLQDLE-KHGVSLTEYPLLKVLDSFPLYGQ--KP--RVKKFLTTESHPWILSL 494
P E+ Y+ L+ K V E + L+S + Q P K+FL T ++ L
Sbjct: 460 ATPAELPYVSLLKRKRKVKFQEVIQSEKLNSSNIIDQIESPLDSTKEFLATMVG-YLQQL 518
Query: 495 QNA 497
Q+A
Sbjct: 519 QSA 521
Score = 213 (80.0 bits), Expect = 1.4e-36, Sum P(2) = 1.4e-36
Identities = 71/245 (28%), Positives = 125/245 (51%)
Query: 20 FSSLG-LHSTLCDQLRERLGFEAPTKVQAQA-IPVILSGRHVLVNAATGTGKTVAYLAPI 77
F G +H ++ + L + F+ T +Q ++ +P+ + + ++ A TGTGKT+A+ P
Sbjct: 88 FKGKGYIHDSIINSLHKN-DFKELTPIQQKSLVPIFNTEKGLVCRAKTGTGKTLAFAVPT 146
Query: 78 INHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIV-PGY--VMGGENR 134
+ + +Y +R G +VLVPTR+L Q+ E KL+ + P ++GG+
Sbjct: 147 LQY--AYK---NRGKGVSTVVLVPTRDLAFQIEEEYRKLISHLKYNERPNLELIIGGQRT 201
Query: 135 SKEKARLRKGISILVATPGRLLDHLKHTSSFLH--TNLRWIIFDEADRILELGFGKEIEE 192
S R+ I++ATPGRL L+ +N+ + I+DEADR+L++GF + E
Sbjct: 202 SFNP---RRPAEIVIATPGRLEKELQTDRKLAKCFSNVTYRIYDEADRLLDVGFESVLNE 258
Query: 193 ILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAK--ISLETPVL--IGLDEK 248
I +L +K +LL SAT++E ++ +K I E L + D+
Sbjct: 259 IDGLLYKVR-------TTPKPIK--SLLFSATVDEAISEFSKKHIHPEYEFLNTVTKDDL 309
Query: 249 KLPED 253
++PE+
Sbjct: 310 EIPEN 314
>ASPGD|ASPL0000062195 [details] [associations]
symbol:AN10125 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005730
"nucleolus" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:BN001308 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
OMA:RIRKRDH EnsemblFungi:CADANIAT00001822 Uniprot:C8VQD7
Length = 814
Score = 309 (113.8 bits), Expect = 1.5e-36, Sum P(2) = 1.5e-36
Identities = 79/234 (33%), Positives = 127/234 (54%)
Query: 16 ASCSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLA 75
A SF L + L + F PT +Q + IPV L G+ ++ +A TG+GKT A++
Sbjct: 296 AKRSFQEFNLSRPILRGLAA-VNFTNPTPIQQKTIPVALLGKDIVGSAVTGSGKTAAFVV 354
Query: 76 PIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRS 135
PI+ L + PR +S +L+PTREL +Q Y + KL + I ++GG +
Sbjct: 355 PILERLL-FRPRKVPTSRV--AILMPTRELAVQCYNVATKLA-TYTDITFCQLVGGFSLR 410
Query: 136 KEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILD 195
+++ L+K +++ATPGR +DH+++++SF L ++ DEADR+LE GF E+ EIL
Sbjct: 411 EQENVLKKRPDVIIATPGRFIDHMRNSASFTVDTLEILVLDEADRMLEDGFADELNEILT 470
Query: 196 ILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKK 249
+ RQ +L SAT+ + V+ L ++ L PV + +D KK
Sbjct: 471 TIPK---------------SRQTMLFSATMTDSVDKLIRVGLNRPVRLMVDTKK 509
Score = 158 (60.7 bits), Expect = 1.5e-36, Sum P(2) = 1.5e-36
Identities = 34/76 (44%), Positives = 45/76 (59%)
Query: 359 LRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEAT 418
L K LHG+M QE R + +F+ LL+TD+A+RGLD V+ +I Y++
Sbjct: 566 LGLKAAELHGSMSQEQRIKSVESFRDGNVNFLLATDLASRGLDIKGVETVINYEAPQSHE 625
Query: 419 EYVHRVGRTARLGERG 434
YVHRVGRTAR G G
Sbjct: 626 IYVHRVGRTARAGRSG 641
>CGD|CAL0004058 [details] [associations]
symbol:DBP8 species:5476 "Candida albicans" [GO:0030686 "90S
preribosome" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0000472 "endonucleolytic cleavage to generate mature 5'-end of
SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
[GO:0000447 "endonucleolytic cleavage in ITS1 to separate SSU-rRNA
from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript
(SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA] [GO:0000480
"endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript
(SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 CGD:CAL0004058 GO:GO:0005524 GO:GO:0005730
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 EMBL:AACQ01000165 EMBL:AACQ01000186
RefSeq:XP_711718.1 RefSeq:XP_712192.1 ProteinModelPortal:Q59PR3
STRING:Q59PR3 GeneID:3646191 GeneID:3646692 KEGG:cal:CaO19.13973
KEGG:cal:CaO19.6652 KO:K14778 Uniprot:Q59PR3
Length = 440
Score = 262 (97.3 bits), Expect = 1.7e-36, Sum P(2) = 1.7e-36
Identities = 64/182 (35%), Positives = 100/182 (54%)
Query: 19 SFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPII 78
SF+ LG+ L + L + + PT +Q+ IP IL G + A TG+GKT+A+ AP++
Sbjct: 2 SFNDLGVAKWLSESL-DAMKIYTPTAIQSACIPAILKGHDCIGGAKTGSGKTIAFAAPML 60
Query: 79 NHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEK 138
S P G F L+L PTREL LQ+ E L + I V+GGE+ ++
Sbjct: 61 TQW-SEDP-----FGIFGLILTPTRELALQIAEQFAALGANMN-IKVAVVVGGEDFVQQT 113
Query: 139 ARLRKGISILVATPGRLLDHLKHTSSFLHTNLR---WIIFDEADRILELGFGKEIEEILD 195
L++ ++ATPGRL DH+ ++ + LR +++ DEADR+L FG +++ D
Sbjct: 114 LALQRKPHFVIATPGRLADHILNSGEETISGLRRVKYLVLDEADRLLSNSFGSDLQRCFD 173
Query: 196 IL 197
+L
Sbjct: 174 VL 175
Score = 196 (74.1 bits), Expect = 1.7e-36, Sum P(2) = 1.7e-36
Identities = 39/104 (37%), Positives = 63/104 (60%)
Query: 353 ELKQLFLRCKTFR---LHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCII 409
E+ + LR FR LH M Q +R + FK +L++TDVA+RGLD P V+ +I
Sbjct: 267 EVLRRMLRKLDFRVASLHSEMPQSERTNSLHRFKAGAARILIATDVASRGLDIPTVELVI 326
Query: 410 QYDSAGEATEYVHRVGRTARLGERGDSLLFLQPVEMDYLQDLEK 453
+D + +++HRVGRTAR G +GD++ + ++D +Q +E+
Sbjct: 327 NFDIPADPDDFIHRVGRTARAGRKGDAVSIIGEKDIDRIQSIEE 370
Score = 180 (68.4 bits), Expect = 6.8e-27, Sum P(2) = 6.8e-27
Identities = 51/151 (33%), Positives = 79/151 (52%)
Query: 93 GTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATP 152
G F L+L PTREL LQ+ E L + I V+GGE+ ++ L++ ++ATP
Sbjct: 69 GIFGLILTPTRELALQIAEQFAALGANMN-IKVAVVVGGEDFVQQTLALQRKPHFVIATP 127
Query: 153 GRLLDHLKHTSSFLHTNLR---WIIFDEADRILELGFGKEIEEILDILGSRNIGSIGEGN 209
GRL DH+ ++ + LR +++ DEADR+L FG +++ D+L + +
Sbjct: 128 GRLADHILNSGEETISGLRRVKYLVLDEADRLLSNSFGSDLQRCFDVLPTSD-------- 179
Query: 210 EVSNVKRQNLLLSATLNEKVNHLAKISLETP 240
KRQ LL +AT+ + V L K TP
Sbjct: 180 -----KRQTLLFTATITDAVRAL-KEKPPTP 204
Score = 44 (20.5 bits), Expect = 1.4e-20, Sum P(2) = 1.4e-20
Identities = 23/78 (29%), Positives = 35/78 (44%)
Query: 280 TTEDFKLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLL 339
T + +P+ L YV VP + A L SIL HL + S V+F + + +L
Sbjct: 216 TVDKVAIPSTLQISYVFVPSYVKEAYLNSIL-HLEQFKDSTA-VIFVNRTTTAEVLRRML 273
Query: 340 SEFQW---SPHSQ-PDME 353
+ + S HS+ P E
Sbjct: 274 RKLDFRVASLHSEMPQSE 291
>WB|WBGene00008119 [details] [associations]
symbol:C46F11.4 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0000003 "reproduction" evidence=IMP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0000003 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083
HOGENOM:HOG000268793 KO:K12835 GeneTree:ENSGT00610000086076
OMA:QEYANLM EMBL:Z81449 PIR:T19974 RefSeq:NP_497743.1
ProteinModelPortal:Q93382 SMR:Q93382 STRING:Q93382 PaxDb:Q93382
EnsemblMetazoa:C46F11.4 GeneID:175469 KEGG:cel:CELE_C46F11.4
UCSC:C46F11.4 CTD:175469 WormBase:C46F11.4 InParanoid:Q93382
NextBio:888300 Uniprot:Q93382
Length = 811
Score = 301 (111.0 bits), Expect = 1.9e-36, Sum P(2) = 1.9e-36
Identities = 69/180 (38%), Positives = 108/180 (60%)
Query: 18 CSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPI 77
CSF+ L + +R+ +E PT +QA AIP LSGR VL A TG+GKT AYL P
Sbjct: 265 CSFAHFSFDKLLMEAIRKS-EYEQPTPIQAMAIPSALSGRDVLGIAKTGSGKTAAYLWPA 323
Query: 78 INHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKE 137
I H+ P + G A+++VPTREL +QV++ K ++ I P GG ++ ++
Sbjct: 324 IVHIMD-QPDLKAGEGPVAVIVVPTRELAIQVFQEAKKFCKVYN-INPICAYGGGSKWEQ 381
Query: 138 KARLR-KGISILVATPGRLLDHLKH-TSSFLHTNLRWIIFDEADRILELGFGKEIEEILD 195
L+ +G ++V TPGR++D +K ++FL T +++FDEADR+ ++GF +++ I D
Sbjct: 382 SNELQNEGAEMVVCTPGRIIDLVKMGATNFLRTT--FLVFDEADRMFDMGFEAQVKSISD 439
Score = 176 (67.0 bits), Expect = 3.1e-22, Sum P(2) = 3.1e-22
Identities = 49/159 (30%), Positives = 85/159 (53%)
Query: 86 PRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLR-KG 144
P + G A+++VPTREL +QV++ K ++ I P GG ++ ++ L+ +G
Sbjct: 331 PDLKAGEGPVAVIVVPTRELAIQVFQEAKKFCKVYN-INPICAYGGGSKWEQSNELQNEG 389
Query: 145 ISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILGSRNIGS 204
++V TPGR++D +K ++ +++FDEADR+ ++GF +++ I D +
Sbjct: 390 AEMVVCTPGRIIDLVKMGATNF-LRTTFLVFDEADRMFDMGFEAQVKSISDHV------- 441
Query: 205 IGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLI 243
RQ L+ SAT +KV LA+ +L PV I
Sbjct: 442 --------RPDRQCLMFSATFKQKVERLARDALVDPVRI 472
Score = 166 (63.5 bits), Expect = 1.9e-36, Sum P(2) = 1.9e-36
Identities = 33/95 (34%), Positives = 59/95 (62%)
Query: 366 LHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRVG 425
LHG+M Q +R F+ +K +L++TDVAARGLD +++ +I +D A + +VHR+G
Sbjct: 541 LHGDMLQAERNENLLKFR-KKSQILVATDVAARGLDISEIRTVINFDMARDIDTHVHRIG 599
Query: 426 RTARLGERGDSLLFLQPVEMDYLQDLEKHGVSLTE 460
RT R G +G + + +++ + L K+ S+++
Sbjct: 600 RTGRAGHKGTAYTLVTEKDIEMVGHLVKNLESVSQ 634
>UNIPROTKB|Q4K4H4 [details] [associations]
symbol:rhlE_2 "Putative ATP-dependent RNA helicase"
species:220664 "Pseudomonas protegens Pf-5" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0006139 GO:GO:0003676
EMBL:CP000076 GenomeReviews:CP000076_GR InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927
OMA:DGDLMGF ProtClustDB:CLSK865855 RefSeq:YP_262859.1
ProteinModelPortal:Q4K4H4 GeneID:3480173 KEGG:pfl:PFL_5801
PATRIC:19881109 BioCyc:PFLU220664:GIX8-5841-MONOMER Uniprot:Q4K4H4
Length = 622
Score = 293 (108.2 bits), Expect = 1.9e-36, Sum P(2) = 1.9e-36
Identities = 83/226 (36%), Positives = 120/226 (53%)
Query: 19 SFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPII 78
SF+SLGL L + E G+ PT VQ +AIP +L GR ++V A TGTGKT + PI+
Sbjct: 2 SFASLGLSEALVGAI-EAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL 60
Query: 79 NHL-QSYSPRIDRSSGTF---ALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENR 134
L + P + G LVL PTREL QV++ KL R V + GG
Sbjct: 61 ERLFPNGHPDKSQRHGPRQPRVLVLTPTRELAAQVHDSF-KLYARDLKFVSACIFGGVGM 119
Query: 135 SKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEIL 194
+ + + +G+ +LVA PGRLLD L S +++ ++ DEADR+L++GF +++++L
Sbjct: 120 NPQVQAMARGVDVLVACPGRLLD-LAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVL 178
Query: 195 DILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETP 240
L + KRQNLL SAT ++ + LA L P
Sbjct: 179 ARLPA---------------KRQNLLFSATFSKDITDLAGKLLHNP 209
Score = 170 (64.9 bits), Expect = 1.9e-36, Sum P(2) = 1.9e-36
Identities = 35/116 (30%), Positives = 61/116 (52%)
Query: 366 LHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRVG 425
+HGN Q R FK + +L++TD+AARGLD ++ ++ ++ +YVHR+G
Sbjct: 279 IHGNKSQNARTKALADFKAGEVRILVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIG 338
Query: 426 RTARLGERGDSLLFLQPVEMDYLQDLEKHGVSLTEYPLLKVLDSFPLYGQKPRVKK 481
RT R G G+++ + P E L+ +E+ L D+ + +KP V++
Sbjct: 339 RTGRAGRSGEAISLVAPDEEKLLKSIERMTKQKIADGDLMGFDASAVEAEKPEVRE 394
>DICTYBASE|DDB_G0277857 [details] [associations]
symbol:helB2 "putative U5 small nuclear
ribonucleoprotein" species:44689 "Dictyostelium discoideum"
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005681 "spliceosomal complex" evidence=ISS]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0000375 "RNA splicing, via transesterification reactions"
evidence=ISS] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
dictyBase:DDB_G0277857 GO:GO:0005524 GO:GO:0005737
GenomeReviews:CM000152_GR EMBL:AAFI02000023 GO:GO:0006397
GO:GO:0005681 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K12858 GO:GO:0000375 HSSP:P09052 EMBL:X81824
RefSeq:XP_642321.1 ProteinModelPortal:Q54Y81 STRING:Q54Y81
EnsemblProtists:DDB0219950 GeneID:8621527 KEGG:ddi:DDB_G0277857
OMA:DRYRDND Uniprot:Q54Y81
Length = 834
Score = 320 (117.7 bits), Expect = 2.2e-36, Sum P(2) = 2.2e-36
Identities = 85/253 (33%), Positives = 141/253 (55%)
Query: 29 LCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRI 88
+ + +R+ LG+E P+ +Q Q+IP+ L+GR +L A TG+GKT A++ P++ ++ S PR+
Sbjct: 424 ILEAIRQ-LGYEKPSPIQMQSIPISLTGRDILGIAETGSGKTCAFVIPMLIYI-SKQPRL 481
Query: 89 DRSS---GTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGI 145
+ + G +ALV+ PTREL Q+ + F + V V GG++ + ++ KG
Sbjct: 482 TKDTEADGPYALVMAPTRELVQQIEKETRNFAQHFGFRVVSLV-GGQSIEDQAYQVSKGC 540
Query: 146 SILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILGSRNIGS- 204
I++ATPGRL D L+ L+ +I+ DEAD +++LGF ++ +LD + S + S
Sbjct: 541 EIIIATPGRLNDCLEKRYLVLN-QCNYIVLDEADMMIDLGFEPQVTSVLDAMPSSFLKSE 599
Query: 205 ---IGEGNEV--SNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDE--KKLPEDKSHV 257
+ E E S++ R +L SAT+ V L+K L P I + E K + + V
Sbjct: 600 DDEMAEKQESDRSHIYRTTILFSATMPPLVEKLSKKYLRRPCTITIGEAGKVVDRIRQTV 659
Query: 258 RFGSLESDVKEEV 270
F E+D KE +
Sbjct: 660 IFVKSENDKKEHL 672
Score = 144 (55.7 bits), Expect = 2.2e-36, Sum P(2) = 2.2e-36
Identities = 29/88 (32%), Positives = 46/88 (52%)
Query: 366 LHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRVG 425
LH QE R FK K +L++T VA+RG+ V +I +D +Y HR+G
Sbjct: 711 LHSGRSQEQREAALEGFKKRKYEVLIATGVASRGIHVDGVTHVINFDIPKNIEDYTHRIG 770
Query: 426 RTARLGERGDSLLFLQPVEMDYLQDLEK 453
RT R G G + F+ +++ + DL++
Sbjct: 771 RTGRAGSAGLASSFITDKDVEIMYDLKQ 798
Score = 58 (25.5 bits), Expect = 1.7e-07, Sum P(2) = 1.7e-07
Identities = 14/49 (28%), Positives = 29/49 (59%)
Query: 204 SIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLE---TPVLIGLDEKK 249
+IGE +V + RQ ++ + N+K HL ++ + P++I +++KK
Sbjct: 644 TIGEAGKVVDRIRQTVIFVKSENDKKEHLTQLIKDGPPPPIIIFVNKKK 692
Score = 37 (18.1 bits), Expect = 2.4e-05, Sum P(2) = 2.4e-05
Identities = 7/17 (41%), Positives = 9/17 (52%)
Query: 98 VLVPTRELCLQVYEILH 114
++ P E C Y ILH
Sbjct: 696 IIAPVLEECRVSYTILH 712
>ZFIN|ZDB-GENE-050706-53 [details] [associations]
symbol:ddx42 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
42" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-050706-53 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00610000086076
EMBL:BX324157 IPI:IPI00774497 Ensembl:ENSDART00000076209
Uniprot:E7F401
Length = 910
Score = 285 (105.4 bits), Expect = 2.2e-36, Sum P(2) = 2.2e-36
Identities = 60/175 (34%), Positives = 102/175 (58%)
Query: 19 SFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPII 78
SF+ G L Q+R+ + PT +Q Q +P+ LSGR + A TG+GKT A++ PI+
Sbjct: 258 SFAHFGFDEQLMHQIRKS-EYTQPTPIQCQGVPIALSGRDAIGIAKTGSGKTAAFIWPIL 316
Query: 79 NHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEK 138
H+ ++ G A+++ PTRELC Q++ K + + + V GG + ++
Sbjct: 317 VHIMDQK-ELEPGEGPIAVIVCPTRELCQQIHAEC-KRFGKAYGLRSVAVYGGGSMWEQA 374
Query: 139 ARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEI 193
L++G I+V TPGRL+DH+K ++ L + +++FDEADR+ ++GF ++ I
Sbjct: 375 KALQEGAEIVVCTPGRLIDHVKKKATSLQ-RVTFLVFDEADRMFDMGFEYQVRSI 428
Score = 185 (70.2 bits), Expect = 2.2e-36, Sum P(2) = 2.2e-36
Identities = 34/89 (38%), Positives = 53/89 (59%)
Query: 366 LHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRVG 425
LHG+M Q +R FK + +L++TDVAARGLD P ++ ++ YD A + + HR+G
Sbjct: 532 LHGDMDQSERNKVIADFKKKNLPVLVATDVAARGLDIPSIRTVVNYDVARDIDTHTHRIG 591
Query: 426 RTARLGERGDSLLFLQPVEMDYLQDLEKH 454
RT R GE+G + L + + DL ++
Sbjct: 592 RTGRAGEKGVAYTLLTTKDTSFAGDLVRN 620
Score = 148 (57.2 bits), Expect = 3.3e-21, Sum P(2) = 3.3e-21
Identities = 40/116 (34%), Positives = 65/116 (56%)
Query: 128 VMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFG 187
V GG + ++ L++G I+V TPGRL+DH+K ++ L + +++FDEADR+ ++GF
Sbjct: 364 VYGGGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKATSLQ-RVTFLVFDEADRMFDMGFE 422
Query: 188 KEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLI 243
++ R+I S V RQ LL SAT +K+ LA+ L P+ +
Sbjct: 423 YQV---------RSIAS-----HV-RPDRQTLLFSATFRKKIEKLARDILVDPIRV 463
>TIGR_CMR|SPO_1443 [details] [associations]
symbol:SPO_1443 "ATP-dependent RNA helicase RhlE"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] [GO:0008152 "metabolic process"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927 RefSeq:YP_166684.1
ProteinModelPortal:Q5LTH1 GeneID:3193638 KEGG:sil:SPO1443
PATRIC:23376201 OMA:VPTHAED ProtClustDB:CLSK933557 Uniprot:Q5LTH1
Length = 471
Score = 278 (102.9 bits), Expect = 2.6e-36, Sum P(2) = 2.6e-36
Identities = 68/177 (38%), Positives = 98/177 (55%)
Query: 20 FSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIIN 79
FS L L+ + + E G+E PT +QA AIP L GR VL A TGTGKT ++ P+I
Sbjct: 4 FSELNLNPKVLKAIEEA-GYETPTPIQAGAIPPALEGRDVLGIAQTGTGKTASFTLPMIT 62
Query: 80 HLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKA 139
L R +LVL PTREL QV E + ++GG + ++ A
Sbjct: 63 LLARGRARARMPR---SLVLCPTRELAAQVAENFDTYTKHLK-LTKALLIGGVSFKEQDA 118
Query: 140 RLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDI 196
+ +G+ +L+ATPGRLLDH + L T ++ ++ DEADR+L++GF +IE I +
Sbjct: 119 LIDRGVDVLIATPGRLLDHFER-GKLLLTGVQIMVVDEADRMLDMGFIPDIERIFSL 174
Score = 178 (67.7 bits), Expect = 2.6e-36, Sum P(2) = 2.6e-36
Identities = 35/88 (39%), Positives = 50/88 (56%)
Query: 366 LHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRVG 425
+HG++ Q R T F+ K LL+++DVAARGLD P V + +D G +YVHR+G
Sbjct: 282 IHGDLDQSQRTRTLDGFREGKLRLLVASDVAARGLDVPSVSHVFNFDVPGHPEDYVHRIG 341
Query: 426 RTARLGERGDSLLFLQPVEMDYLQDLEK 453
RT R G G ++ P + L +EK
Sbjct: 342 RTGRAGRDGKAITLCIPRDEKALDAIEK 369
Score = 145 (56.1 bits), Expect = 4.8e-21, Sum P(2) = 4.8e-21
Identities = 36/116 (31%), Positives = 61/116 (52%)
Query: 128 VMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFG 187
++GG + ++ A + +G+ +L+ATPGRLLDH + L T ++ ++ DEADR+L++GF
Sbjct: 107 LIGGVSFKEQDALIDRGVDVLIATPGRLLDHFER-GKLLLTGVQIMVVDEADRMLDMGFI 165
Query: 188 KEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLI 243
+IE I + + RQ L SAT+ ++ + L P I
Sbjct: 166 PDIERIFSL---------------TPFTRQTLFFSATMAPEIERITNTFLSAPARI 206
>FB|FBgn0037561 [details] [associations]
symbol:CG9630 species:7227 "Drosophila melanogaster"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 EMBL:AE014297 GO:GO:0005524 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
InterPro:IPR025313 Pfam:PF13959 HSSP:P10081 KO:K14809
GeneTree:ENSGT00550000074969 EMBL:AY051513 RefSeq:NP_649777.1
UniGene:Dm.1101 ProteinModelPortal:Q9VHU1 SMR:Q9VHU1 IntAct:Q9VHU1
STRING:Q9VHU1 PaxDb:Q9VHU1 PRIDE:Q9VHU1 EnsemblMetazoa:FBtr0081866
GeneID:40974 KEGG:dme:Dmel_CG9630 UCSC:CG9630-RA
FlyBase:FBgn0037561 InParanoid:Q9VHU1 OMA:CACVEYW OrthoDB:EOG4TDZ1Q
PhylomeDB:Q9VHU1 GenomeRNAi:40974 NextBio:821545 Bgee:Q9VHU1
GermOnline:CG9630 Uniprot:Q9VHU1
Length = 613
Score = 257 (95.5 bits), Expect = 2.6e-36, Sum P(2) = 2.6e-36
Identities = 78/228 (34%), Positives = 118/228 (51%)
Query: 32 QLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQ---SYSPRI 88
Q+ + GF+ T VQ AIP++L+ + V A TG+GKT+A+L P++ LQ +P
Sbjct: 20 QVVQSFGFQQMTPVQTAAIPLLLARKDVSAEAVTGSGKTLAFLVPMLEILQRRHKETPWG 79
Query: 89 DRSSGTFALVLVPTRELCLQVYEILHKLL-HR-FHWIVPGYVMGGENRSKEKARLRKGIS 146
+ G ALV+ PTREL Q+ E+L + L H + ++GG + ++ A LR+
Sbjct: 80 PKEIG--ALVISPTRELARQISEVLAQFLEHEDLEHLNQQLIVGGNSIEEDIATLRRETP 137
Query: 147 -ILVATPGRLLDHLKHTSSFLHT-----NLRWIIFDEADRILELGFGKEIEEILDILGSR 200
ILV TPGRL D + L+ +L +++ DEADR+L+LGF + IL L +
Sbjct: 138 CILVCTPGRLEDLFQRKGDDLNLAAQVKSLEFLVLDEADRLLDLGFKTSVNNILGYLPRQ 197
Query: 201 NIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEK 248
R+ L SAT +V L + L PVL+ + EK
Sbjct: 198 ---------------RRTGLFSATQTTEVTDLIRAGLRNPVLVSVKEK 230
Score = 209 (78.6 bits), Expect = 2.6e-36, Sum P(2) = 2.6e-36
Identities = 53/141 (37%), Positives = 80/141 (56%)
Query: 321 KLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFG 380
K++VFF TC V++ W+ + P + K+ L +HG MK + R
Sbjct: 268 KVMVFFPTCACVEY---------WA-EALPPLLPKRTVLG-----IHGKMKNK-RANVVE 311
Query: 381 AFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRVGRTARLGERGDSLLFL 440
F+ +A+LL TDV ARGLD P+++ ++Q+D A+ +VHRVGRTAR G G++L+FL
Sbjct: 312 KFRNTPQAVLLCTDVLARGLDVPEIEWVVQWDPPSTASSFVHRVGRTARQGNEGNALVFL 371
Query: 441 QPVEMDYLQDLE-KHGVSLTE 460
P E Y+ L+ V LT+
Sbjct: 372 LPSEDAYVHFLKINQKVELTK 392
>GENEDB_PFALCIPARUM|PFE0925c [details] [associations]
symbol:PFE0925c "snrnp protein, putative"
species:5833 "Plasmodium falciparum" [GO:0020011 "apicoplast"
evidence=RCA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
EMBL:AL844504 InterPro:IPR014014 PROSITE:PS51195 KO:K12858
HSSP:Q58083 HOGENOM:HOG000268796 RefSeq:XP_001351742.1
ProteinModelPortal:Q8I0W7 EnsemblProtists:PFE0925c:mRNA
GeneID:813000 KEGG:pfa:PFE0925c EuPathDB:PlasmoDB:PF3D7_0518500
ProtClustDB:CLSZ2514918 Uniprot:Q8I0W7
Length = 1123
Score = 294 (108.6 bits), Expect = 2.7e-36, Sum P(2) = 2.7e-36
Identities = 72/220 (32%), Positives = 119/220 (54%)
Query: 39 FEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSS--GTFA 96
+E PT +Q QAIP+ L R ++ A TG+GKT A++ P++++++ P +S G +A
Sbjct: 718 YEKPTPIQMQAIPIALEMRDLIGIAETGSGKTAAFVLPMLSYVKQLPPLTYETSQDGPYA 777
Query: 97 LVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLL 156
LV+ P+REL +Q+YE +K V+GG N + LR+G+ I++ TPGRL
Sbjct: 778 LVIAPSRELAIQIYEETNKFASYCSCRTVA-VVGGRNAEAQAFELRRGVEIVIGTPGRLQ 836
Query: 157 DHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILGSRNIGSIGEG---NEVSN 213
D L+ + L+ ++I DEADR++++GF + ILD + + N+ S + E
Sbjct: 837 DCLEKAYTVLN-QCNYVILDEADRMMDMGFEDTVHYILDKIPTSNLKSEDDALALQEEMM 895
Query: 214 VK------RQNLLLSATLNEKVNHLAKISLETPVLIGLDE 247
K R + SAT+ V L++ L P I + +
Sbjct: 896 TKAGHRLYRLTQMFSATMPPSVERLSRKYLRAPAYISIGD 935
Score = 177 (67.4 bits), Expect = 2.7e-36, Sum P(2) = 2.7e-36
Identities = 40/119 (33%), Positives = 63/119 (52%)
Query: 359 LRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEAT 418
++ K LHG QE R T AFK + +L++TDVA RG+D VK +I +D +
Sbjct: 990 MKYKAVALHGGKAQEIREQTLSAFKNAEFDILVATDVAGRGIDVHGVKLVINFDMPKDIE 1049
Query: 419 EYVHRVGRTARLGERGDSLLFLQPVEMDYLQDLEKHGVSLTEYPLLKVLDSFPLYGQKP 477
Y HR+GRT R G +G ++ F+ + DL++ +S L++ ++ P KP
Sbjct: 1050 SYTHRIGRTGRAGMKGLAISFITEHDSHLFYDLKQFLISSNNIVPLELANN-PASKVKP 1107
>UNIPROTKB|Q8I0W7 [details] [associations]
symbol:PFE0925c "Snrnp protein, putative" species:36329
"Plasmodium falciparum 3D7" [GO:0020011 "apicoplast" evidence=RCA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 EMBL:AL844504
InterPro:IPR014014 PROSITE:PS51195 KO:K12858 HSSP:Q58083
HOGENOM:HOG000268796 RefSeq:XP_001351742.1
ProteinModelPortal:Q8I0W7 EnsemblProtists:PFE0925c:mRNA
GeneID:813000 KEGG:pfa:PFE0925c EuPathDB:PlasmoDB:PF3D7_0518500
ProtClustDB:CLSZ2514918 Uniprot:Q8I0W7
Length = 1123
Score = 294 (108.6 bits), Expect = 2.7e-36, Sum P(2) = 2.7e-36
Identities = 72/220 (32%), Positives = 119/220 (54%)
Query: 39 FEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSS--GTFA 96
+E PT +Q QAIP+ L R ++ A TG+GKT A++ P++++++ P +S G +A
Sbjct: 718 YEKPTPIQMQAIPIALEMRDLIGIAETGSGKTAAFVLPMLSYVKQLPPLTYETSQDGPYA 777
Query: 97 LVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLL 156
LV+ P+REL +Q+YE +K V+GG N + LR+G+ I++ TPGRL
Sbjct: 778 LVIAPSRELAIQIYEETNKFASYCSCRTVA-VVGGRNAEAQAFELRRGVEIVIGTPGRLQ 836
Query: 157 DHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILGSRNIGSIGEG---NEVSN 213
D L+ + L+ ++I DEADR++++GF + ILD + + N+ S + E
Sbjct: 837 DCLEKAYTVLN-QCNYVILDEADRMMDMGFEDTVHYILDKIPTSNLKSEDDALALQEEMM 895
Query: 214 VK------RQNLLLSATLNEKVNHLAKISLETPVLIGLDE 247
K R + SAT+ V L++ L P I + +
Sbjct: 896 TKAGHRLYRLTQMFSATMPPSVERLSRKYLRAPAYISIGD 935
Score = 177 (67.4 bits), Expect = 2.7e-36, Sum P(2) = 2.7e-36
Identities = 40/119 (33%), Positives = 63/119 (52%)
Query: 359 LRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEAT 418
++ K LHG QE R T AFK + +L++TDVA RG+D VK +I +D +
Sbjct: 990 MKYKAVALHGGKAQEIREQTLSAFKNAEFDILVATDVAGRGIDVHGVKLVINFDMPKDIE 1049
Query: 419 EYVHRVGRTARLGERGDSLLFLQPVEMDYLQDLEKHGVSLTEYPLLKVLDSFPLYGQKP 477
Y HR+GRT R G +G ++ F+ + DL++ +S L++ ++ P KP
Sbjct: 1050 SYTHRIGRTGRAGMKGLAISFITEHDSHLFYDLKQFLISSNNIVPLELANN-PASKVKP 1107
>UNIPROTKB|H7C452 [details] [associations]
symbol:DDX18 "ATP-dependent RNA helicase DDX18"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
PROSITE:PS51192 GO:GO:0008026 HGNC:HGNC:2741 ChiTaRS:DDX18
EMBL:AC009312 EMBL:AC009404 ProteinModelPortal:H7C452 PRIDE:H7C452
Ensembl:ENST00000415038 Bgee:H7C452 Uniprot:H7C452
Length = 214
Score = 229 (85.7 bits), Expect = 2.9e-36, Sum P(3) = 2.9e-36
Identities = 49/96 (51%), Positives = 62/96 (64%)
Query: 366 LHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRVG 425
+HG KQ R TTF F LL TDVAARGLD P+V I+QYD + EY+HRVG
Sbjct: 119 IHGKQKQNKRTTTFFQFCNADSGTLLCTDVAARGLDIPEVDWIVQYDPPDDPKEYIHRVG 178
Query: 426 RTAR-LGERGDSLLFLQPVEMDYLQDLEKHGVSLTE 460
RTAR L RG +LL L+P E+ +L+ L++ V L+E
Sbjct: 179 RTARGLNGRGHALLILRPEELGFLRYLKQSKVPLSE 214
Score = 141 (54.7 bits), Expect = 2.9e-36, Sum P(3) = 2.9e-36
Identities = 34/90 (37%), Positives = 56/90 (62%)
Query: 161 HTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLL 220
+T F++ NL+ ++ DEADRIL++GF +E+++I+ +L +R RQ +L
Sbjct: 1 NTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLPTR---------------RQTML 45
Query: 221 LSATLNEKVNHLAKISLET-PVLIGLDEKK 249
SAT KV LA+ISL+ P+ +G+D+ K
Sbjct: 46 FSATQTRKVEDLARISLKKEPLYVGVDDDK 75
Score = 69 (29.3 bits), Expect = 2.9e-36, Sum P(3) = 2.9e-36
Identities = 12/21 (57%), Positives = 18/21 (85%)
Query: 320 QKLVVFFSTCDAVDFHYSLLS 340
+KL+VFFS+C +V +HY LL+
Sbjct: 90 KKLMVFFSSCMSVKYHYELLN 110
>ASPGD|ASPL0000051195 [details] [associations]
symbol:AN1634 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0008380 EMBL:BN001307
GO:GO:0006397 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:AACD01000026 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 KO:K12858 HSSP:P09052
HOGENOM:HOG000268796 OMA:PIRNWKE RefSeq:XP_659238.1
ProteinModelPortal:Q5BCU6 EnsemblFungi:CADANIAT00008272
GeneID:2874876 KEGG:ani:AN1634.2 OrthoDB:EOG4KPXK0 Uniprot:Q5BCU6
Length = 782
Score = 296 (109.3 bits), Expect = 3.1e-36, Sum P(2) = 3.1e-36
Identities = 78/240 (32%), Positives = 129/240 (53%)
Query: 19 SFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPII 78
S+ GL L + L +R+G++ PT +Q AIP+ + R ++ A TG+GKT A+L P++
Sbjct: 347 SWDESGLPKRLLE-LVDRVGYKEPTPIQRAAIPIAMQSRDLIGVAVTGSGKTAAFLLPLL 405
Query: 79 NHLQSYSPRID-----RSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGEN 133
++ PRID ++ G +A+VL PTREL Q+ K + V ++GG +
Sbjct: 406 CYIAEL-PRIDEFEWRKNDGPYAIVLAPTRELAQQIEIEAKKFTEPLGFNVVS-IVGGHS 463
Query: 134 RSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEI 193
++ LR G I++ATPGRL+D ++ L + ++I DEADR+++LGF + + +I
Sbjct: 464 FEEQAYSLRNGAEIIIATPGRLVDCIERRMLVL-SQCCYVIMDEADRMIDLGFEEPVNKI 522
Query: 194 LDILGSRNIGSIGEGNEVSNVK----------RQNLLLSATLNEKVNHLAKISLETPVLI 243
LD L N E E S+ RQ ++ +AT+ V +A+ L P ++
Sbjct: 523 LDALPVTNEKPDTEEAEDSSAMSRHLGSKDRYRQTMMYTATMPTAVERIARKYLRRPAIV 582
Score = 169 (64.5 bits), Expect = 3.1e-36, Sum P(2) = 3.1e-36
Identities = 38/114 (33%), Positives = 61/114 (53%)
Query: 353 ELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYD 412
E+KQ T LHG+ QE R + + +L++TD+A RG+D P V +I ++
Sbjct: 640 EIKQWGFSSVT--LHGSKTQEQREAALASVRNGSTDVLVATDLAGRGIDVPDVSLVINFN 697
Query: 413 SAGEATEYVHRVGRTARLGERGDSLLFLQPVEMDYLQDLEKHGVSLTEYPLLKV 466
A Y HR+GRT R G+ G ++ FL + D + DL++ L + P+ +V
Sbjct: 698 MATSIESYTHRIGRTGRAGKSGVAITFLGNEDADVMYDLKQ---MLIKSPISRV 748
>ZFIN|ZDB-GENE-030131-667 [details] [associations]
symbol:ddx46 "DEAD (Asp-Glu-Ala-Asp) box
polypeptide 46" species:7955 "Danio rerio" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IMP] [GO:0031017 "exocrine
pancreas development" evidence=IMP] [GO:0007420 "brain development"
evidence=IMP] [GO:0048546 "digestive tract morphogenesis"
evidence=IMP] [GO:0072576 "liver morphogenesis" evidence=IMP]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0016607 "nuclear speck" evidence=IEA] [GO:0015030 "Cajal body"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 ZFIN:ZDB-GENE-030131-667
GO:GO:0005524 GO:GO:0007420 GO:GO:0003676 GO:GO:0000398
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0048546
GO:GO:0008026 GO:GO:0031017 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00610000086076 OMA:IEEENKF GO:GO:0072576
EMBL:CU302316 IPI:IPI00865887 Ensembl:ENSDART00000099265
ArrayExpress:F1RA00 Bgee:F1RA00 Uniprot:F1RA00
Length = 1035
Score = 296 (109.3 bits), Expect = 3.2e-36, Sum P(2) = 3.2e-36
Identities = 76/221 (34%), Positives = 121/221 (54%)
Query: 24 GLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQS 83
G+ + + L++ +E PT +QAQAIP I+SGR ++ A TG+GKT+A+L P+ H+
Sbjct: 363 GISMKVLNALKKH-NYEKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHILD 421
Query: 84 YSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRK 143
P + + G A+++ PTREL LQ+ + K V V GG S++ A L++
Sbjct: 422 QRP-VGEAEGPLAVIMTPTRELALQITKECKKFSKSLALRVV-CVYGGTGISEQIAELKR 479
Query: 144 GISILVATPGRLLDHLKHTSSFLHTNLR---WIIFDEADRILELGFGKEIEEILDILGSR 200
G I+V TPGR++D L + + TNLR +++ DEADR+ ++GF ++ I+D
Sbjct: 480 GAEIIVCTPGRMIDMLGANNGRV-TNLRRVTYVVIDEADRMFDMGFEPQVMRIVD----- 533
Query: 201 NIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPV 241
N+ RQ ++ SAT + LA+ L PV
Sbjct: 534 NV----------RPDRQTVMFSATFPRTMEALARRILSKPV 564
Score = 173 (66.0 bits), Expect = 3.2e-36, Sum P(2) = 3.2e-36
Identities = 52/181 (28%), Positives = 79/181 (43%)
Query: 274 STTMRSTTEDFKLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVD 333
S T T E L +++ + V+V G R V + +H+ E +K +
Sbjct: 545 SATFPRTME--ALARRILSKPVEVQVGGRSVVCSDVEQHVIVIEEEKKFLKLLEILGHYQ 602
Query: 334 FHYSLLSEFQWSPHSQPDMELKQLFLRC-KTFRLHGNMKQEDRRTTFGAFKTEKKALLLS 392
S++ H+ D LK L LHG + Q DR + FK LL++
Sbjct: 603 EKGSVIIFVDKQEHA--DGLLKDLMKASYPCMSLHGGIDQYDRDSIINDFKNGACRLLVA 660
Query: 393 TDVAARGLDFPKVKCIIQYDSAGEATEYVHRVGRTARLGERGDSLLFLQPVEMDYLQDLE 452
T VAARGLD ++ ++ Y +YVHR GRT R G +G + F+ + Y D+
Sbjct: 661 TSVAARGLDVKQLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAYTFITEGQARYSGDIL 720
Query: 453 K 453
K
Sbjct: 721 K 721
>POMBASE|SPBC17D1.06 [details] [associations]
symbol:dbp3 "ATP-dependent RNA helicase Dbp3
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0000027
"ribosomal large subunit assembly" evidence=ISO] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISO] [GO:0005524 "ATP binding" evidence=ISM]
[GO:0005730 "nucleolus" evidence=ISO;IDA] [GO:0006364 "rRNA
processing" evidence=ISO] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 PomBase:SPBC17D1.06 GO:GO:0005524
GO:GO:0005730 EMBL:CU329671 GenomeReviews:CU329671_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0004004 GO:GO:0000027 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268804 KO:K14811 OrthoDB:EOG42JS0S
PIR:T39709 RefSeq:NP_596388.1 ProteinModelPortal:Q10202
STRING:Q10202 PRIDE:Q10202 EnsemblFungi:SPBC17D1.06.1
GeneID:2540213 KEGG:spo:SPBC17D1.06 OMA:DRILVFC NextBio:20801345
Uniprot:Q10202
Length = 578
Score = 290 (107.1 bits), Expect = 3.6e-36, Sum P(2) = 3.6e-36
Identities = 86/219 (39%), Positives = 121/219 (55%)
Query: 32 QLRERL-GFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDR 90
+LRE L ++ PT +QA P +L+GR V+ A TG+GKTVA+ P + +L S D
Sbjct: 177 KLREGLKNYKEPTPIQAATWPYLLAGRDVVGIAETGSGKTVAFGIPALQYLNGLS---DN 233
Query: 91 SSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVA 150
S LV+ PTREL +Q YE L+ L+ + + V GG +S E+AR K S+++
Sbjct: 234 KSVPRVLVVSPTRELAIQTYENLNSLIQGTN-LKAVVVYGGAPKS-EQARAAKNASVIIG 291
Query: 151 TPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILGSRNIGSIGEGNE 210
TPGRLLD L + S + + +++ DEADR+L+ GF ++I RNI S +
Sbjct: 292 TPGRLLD-LINDGSIDCSQVGYLVLDEADRMLDTGFEQDI---------RNIIS-HTPDP 340
Query: 211 VSNVKRQNLLLSATLNEKVNHLAKISLETPV--LIGLDE 247
N RQ + SAT E V LA L+ PV IG DE
Sbjct: 341 TRNGSRQTVFFSATWPESVRALAATFLKDPVKITIGSDE 379
Score = 169 (64.5 bits), Expect = 3.6e-36, Sum P(2) = 3.6e-36
Identities = 34/86 (39%), Positives = 50/86 (58%)
Query: 366 LHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRVG 425
+HG+M Q R FK+ K +L++TDVAARGLD PKV+ +I +YVHR+G
Sbjct: 446 IHGDMSQGARLQALNDFKSGKCPVLVATDVAARGLDIPKVQLVINVTFPLTIEDYVHRIG 505
Query: 426 RTARLGERGDSLLFLQPVEMDYLQDL 451
RT R +G ++ F P + + +L
Sbjct: 506 RTGRANTKGTAITFFTPQDKSHAGEL 531
Score = 45 (20.9 bits), Expect = 2.5e-09, Sum P(2) = 2.5e-09
Identities = 20/89 (22%), Positives = 38/89 (42%)
Query: 209 NEVSNVKRQNLLLSATLNEKVNHLA-KISLETPVLIGLDEKKLPEDKSHVRFGSLESDVK 267
+E ++VKR+ + +E H K S + + D+KK + KS + S+E + +
Sbjct: 63 DEEASVKRKE---KKSKHEHKKHKKDKPSADKDRISKKDKKKSKKGKSKTKEESIEINAE 119
Query: 268 EEVEHPSTTMRSTTEDFKLPAQLVQRYVK 296
E + + S + RY+K
Sbjct: 120 EGAKIAQPAIGSANASNHNDEEAYDRYIK 148
>ZFIN|ZDB-GENE-030131-6215 [details] [associations]
symbol:ddx23 "DEAD (Asp-Glu-Ala-Asp) box
polypeptide 23" species:7955 "Danio rerio" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 ZFIN:ZDB-GENE-030131-6215
GO:GO:0005524 GO:GO:0003676 GeneTree:ENSGT00690000102171
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K12858
CTD:9416 HOGENOM:HOG000268796 HOVERGEN:HBG102054 OrthoDB:EOG46T312
EMBL:CR936486 EMBL:CR354537 EMBL:BC060524 IPI:IPI00509665
RefSeq:NP_956176.1 UniGene:Dr.78688 STRING:Q6P9Z2
Ensembl:ENSDART00000019620 GeneID:334283 KEGG:dre:334283
InParanoid:Q6P9Z2 NextBio:20810336 Uniprot:Q6P9Z2
Length = 807
Score = 293 (108.2 bits), Expect = 4.9e-36, Sum P(2) = 4.9e-36
Identities = 76/235 (32%), Positives = 129/235 (54%)
Query: 35 ERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDR---- 90
E+ G++ PT +Q QAIP+ L R ++ A TG+GKT A+L P++ + + P+IDR
Sbjct: 394 EKCGYKDPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLVWITTL-PKIDRIEDS 452
Query: 91 SSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVA 150
G +A++L PTREL Q+ E K I V+GG +R + RLR G I++A
Sbjct: 453 DQGPYAIILAPTRELAQQIEEETIKFGKPLG-IRTVAVIGGISREDQGFRLRMGCEIVIA 511
Query: 151 TPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILGSRNIGSIGEGNE 210
TPGRL+D L++ L + +++ DEADR++++GF ++++IL+ + N + E
Sbjct: 512 TPGRLIDVLENRYLVL-SRCTYVVLDEADRMIDMGFEPDVQKILEYIPVTNQKPDTDDAE 570
Query: 211 -----VSNVK------RQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLPEDK 254
+ N + RQ ++ +AT+ V LA+ L P ++ + P ++
Sbjct: 571 DPEKMMQNFESGKHKYRQTVMFTATMPPAVERLARSYLRRPAVVYIGSAGKPHER 625
Score = 171 (65.3 bits), Expect = 4.9e-36, Sum P(2) = 4.9e-36
Identities = 33/88 (37%), Positives = 48/88 (54%)
Query: 366 LHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRVG 425
LHG QE R K K +L++TDVA RG+D V ++ YD A +Y+HR+G
Sbjct: 681 LHGGKGQEQREFALSNLKAGAKDILVATDVAGRGIDIQDVSMVLNYDMAKNIEDYIHRIG 740
Query: 426 RTARLGERGDSLLFLQPVEMDYLQDLEK 453
RT R G+ G ++ FL + DL++
Sbjct: 741 RTGRAGKSGVAMTFLTKEDSSVFYDLKQ 768
Score = 48 (22.0 bits), Expect = 3.3e-09, Sum P(3) = 3.3e-09
Identities = 10/33 (30%), Positives = 21/33 (63%)
Query: 263 ESDVKEEVEH-PSTTMRSTTEDFKLPAQLVQRY 294
E DV++ +E+ P T + T+D + P +++Q +
Sbjct: 547 EPDVQKILEYIPVTNQKPDTDDAEDPEKMMQNF 579
Score = 39 (18.8 bits), Expect = 3.3e-09, Sum P(3) = 3.3e-09
Identities = 14/45 (31%), Positives = 19/45 (42%)
Query: 132 ENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFD 176
+ R K + KG LVA R L +K H N R +F+
Sbjct: 219 DERQKIREEKDKGKE-LVAIKERYLGGMKKRRRTRHLNDRKFVFE 262
>TAIR|locus:2035741 [details] [associations]
symbol:RH20 "RNA helicase 20" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA;ISS]
[GO:0005829 "cytosol" evidence=IDA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005829 GO:GO:0005524 GO:GO:0005634
GO:GO:0000184 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823
EMBL:AC073944 EMBL:AY062745 EMBL:AY128786 EMBL:AJ010470
IPI:IPI00528901 PIR:B96593 PIR:T51345 RefSeq:NP_175911.1
UniGene:At.20425 ProteinModelPortal:Q9C718 SMR:Q9C718 PaxDb:Q9C718
PRIDE:Q9C718 ProMEX:Q9C718 EnsemblPlants:AT1G55150.1 GeneID:841958
KEGG:ath:AT1G55150 GeneFarm:937 TAIR:At1g55150 InParanoid:Q9C718
OMA:CANHNIL PhylomeDB:Q9C718 ProtClustDB:CLSN2682455
Genevestigator:Q9C718 GermOnline:AT1G55150 Uniprot:Q9C718
Length = 501
Score = 280 (103.6 bits), Expect = 5.1e-36, Sum P(2) = 5.1e-36
Identities = 60/176 (34%), Positives = 104/176 (59%)
Query: 19 SFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPII 78
SF +G + ++++ + GF PT +Q+Q P+ + GR ++ A TG+GKT++YL P I
Sbjct: 100 SFRDVGFPDYVLEEVK-KAGFTEPTPIQSQGWPMAMKGRDLIGIAETGSGKTLSYLLPAI 158
Query: 79 NHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEK 138
H+ + P + G LVL PTREL +Q+ + K I + GG + +
Sbjct: 159 VHVNA-QPMLAHGDGPIVLVLAPTRELAVQIQQEASKFGSSSK-IKTTCIYGGVPKGPQV 216
Query: 139 ARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEIL 194
L+KG+ I++ATPGRL+D ++ ++ L + +++ DEADR+L++GF +I +I+
Sbjct: 217 RDLQKGVEIVIATPGRLIDMMESNNTNLR-RVTYLVLDEADRMLDMGFDPQIRKIV 271
Score = 175 (66.7 bits), Expect = 5.1e-36, Sum P(2) = 5.1e-36
Identities = 33/86 (38%), Positives = 49/86 (56%)
Query: 366 LHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRVG 425
+HG+ Q +R F++ K ++ +TDVAARGLD VK +I YD G +YVHR+G
Sbjct: 374 IHGDKSQAERDWVLSEFRSGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIG 433
Query: 426 RTARLGERGDSLLFLQPVEMDYLQDL 451
RT R G +G + F + ++L
Sbjct: 434 RTGRAGAKGTAYTFFTVANARFAKEL 459
Score = 141 (54.7 bits), Expect = 3.5e-20, Sum P(2) = 3.5e-20
Identities = 41/126 (32%), Positives = 70/126 (55%)
Query: 128 VMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFG 187
+ GG + + L+KG+ I++ATPGRL+D ++ ++ L + +++ DEADR+L++GF
Sbjct: 206 IYGGVPKGPQVRDLQKGVEIVIATPGRLIDMMESNNTNLR-RVTYLVLDEADRMLDMGFD 264
Query: 188 KEIEEILDILGSRNIGSIGEGNEVSNVK--RQNLLLSATLNEKVNHLAKISLETP--VLI 243
+I +I VS+++ RQ L SAT ++V L+K L P V+I
Sbjct: 265 PQIRKI-----------------VSHIRPDRQTLYWSATWPKEVEQLSKKFLYNPYKVII 307
Query: 244 GLDEKK 249
G + K
Sbjct: 308 GSSDLK 313
>FB|FBgn0015331 [details] [associations]
symbol:abs "abstrakt" species:7227 "Drosophila melanogaster"
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=NAS]
[GO:0004386 "helicase activity" evidence=ISS] [GO:0030010
"establishment of cell polarity" evidence=NAS] [GO:0007399 "nervous
system development" evidence=NAS] [GO:0005634 "nucleus"
evidence=NAS] [GO:0009653 "anatomical structure morphogenesis"
evidence=NAS] [GO:0006915 "apoptotic process" evidence=NAS]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC] [GO:0071011 "precatalytic spliceosome" evidence=IDA]
InterPro:IPR001650 InterPro:IPR001878 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS50158
PROSITE:PS51194 SMART:SM00343 SMART:SM00490 EMBL:AE014297
GO:GO:0005524 GO:GO:0046872 GO:GO:0008270 GO:GO:0003723
GO:GO:0004386 GO:GO:0071011 GO:GO:0000398 GO:GO:0071013
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 KO:K13116 EMBL:AF212866 EMBL:AF187729
EMBL:AY051752 RefSeq:NP_524220.1 UniGene:Dm.3300
ProteinModelPortal:Q9V3C0 SMR:Q9V3C0 DIP:DIP-21861N IntAct:Q9V3C0
MINT:MINT-341079 STRING:Q9V3C0 PaxDb:Q9V3C0 PRIDE:Q9V3C0
EnsemblMetazoa:FBtr0078967 GeneID:40530 KEGG:dme:Dmel_CG14637
UCSC:CG14637-RA CTD:40530 FlyBase:FBgn0015331 InParanoid:Q9V3C0
OMA:KDQEERS OrthoDB:EOG4KWH7Z PhylomeDB:Q9V3C0 GenomeRNAi:40530
NextBio:819209 Bgee:Q9V3C0 GermOnline:CG14637 Uniprot:Q9V3C0
Length = 619
Score = 278 (102.9 bits), Expect = 6.3e-36, Sum P(2) = 6.3e-36
Identities = 77/215 (35%), Positives = 120/215 (55%)
Query: 38 GFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHL--QSYSPRIDRSSGTF 95
G + PT +Q Q +P +L+GR ++ A TG+GKT+ ++ P+I Q YS +R+ G +
Sbjct: 196 GIKNPTPIQVQGLPTVLAGRDLIGIAFTGSGKTLVFVLPVIMFALEQEYSLPFERNEGPY 255
Query: 96 ALVLVPTRELCLQVYEIL-HKLLHRFHWIVPGY----VMGGENRSKEKARLRKGISILVA 150
L++ P+REL Q +EI+ H H +P MGG S+ + +G+ I+VA
Sbjct: 256 GLIICPSRELAKQTHEIIQHYSKHLQACGMPEIRSCLAMGGLPVSEALDVISRGVHIVVA 315
Query: 151 TPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILGSRNIGSIGEGNE 210
TPGRL+D L L R++ DEADR++++GF EE D+ R I S +G
Sbjct: 316 TPGRLMDMLDKKILTLDM-CRYLCMDEADRMIDMGF----EE--DV---RTIFSFFKG-- 363
Query: 211 VSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGL 245
+RQ LL SAT+ +K+ + A+ +L PV I +
Sbjct: 364 ----QRQTLLFSATMPKKIQNFARSALVKPVTINV 394
Score = 182 (69.1 bits), Expect = 6.3e-36, Sum P(2) = 6.3e-36
Identities = 38/90 (42%), Positives = 54/90 (60%)
Query: 366 LHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRVG 425
+HG QE+R A++ KK +L++TDVA++GLDFP V+ +I YD + YVHR+G
Sbjct: 458 IHGGKDQEERSRAVDAYRVGKKDVLVATDVASKGLDFPNVQHVINYDMPDDIENYVHRIG 517
Query: 426 RTARLGERG-DSLLFLQPVEMDYLQDLEKH 454
RT R +G + L + E L DL KH
Sbjct: 518 RTGRSNTKGLATTLINKTTEQSVLLDL-KH 546
>WB|WBGene00002244 [details] [associations]
symbol:laf-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP] [GO:0042006
"masculinization of hermaphroditic germ-line" evidence=IMP]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0043186 "P granule"
evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0009792
GO:GO:0040007 GO:GO:0002119 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043186
HOGENOM:HOG000268804 KO:K11594 GO:GO:0042006 EMBL:FO081822
EMBL:FJ348231 RefSeq:NP_001254859.1 UniGene:Cel.25045
ProteinModelPortal:D0PV95 SMR:D0PV95 GeneID:190611
KEGG:cel:CELE_Y71H2AM.19 CTD:190611 WormBase:Y71H2AM.19b
ArrayExpress:D0PV95 Uniprot:D0PV95
Length = 708
Score = 275 (101.9 bits), Expect = 7.9e-36, Sum P(2) = 7.9e-36
Identities = 69/187 (36%), Positives = 105/187 (56%)
Query: 20 FSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIIN 79
FS L LH + + ++ G++ PT VQ +IP + GR ++ A TG+GKT A+L P++N
Sbjct: 233 FSDLSLHEWIEENIKTA-GYDRPTPVQKYSIPALQGGRDLMSCAQTGSGKTAAFLVPLVN 291
Query: 80 HLQSYSP----RIDRSSG------TFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVM 129
+ P R SSG ALVL PTREL LQ++ K +R I +
Sbjct: 292 AILQDGPDAVHRSVTSSGGRKKQYPSALVLSPTRELSLQIFNESRKFAYRTP-ITSALLY 350
Query: 130 GGENRSKEKA-RLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGK 188
GG K++ +LR G IL+ATPGRL+D + + R+++ DEADR+L++GF
Sbjct: 351 GGRENYKDQIHKLRLGCHILIATPGRLIDVMDQGLIGME-GCRYLVLDEADRMLDMGFEP 409
Query: 189 EIEEILD 195
+I +I++
Sbjct: 410 QIRQIVE 416
Score = 187 (70.9 bits), Expect = 7.9e-36, Sum P(2) = 7.9e-36
Identities = 56/185 (30%), Positives = 86/185 (46%)
Query: 271 EHPSTTMRSTT--EDFKLPAQ--LVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFF 326
E T M S T ++ +L AQ L + YV + G + +I++ + E +K
Sbjct: 424 EERITAMFSATFPKEIQLLAQDFLKENYVFLAVGRVGSTSENIMQKIVWVEEDEKRSYLM 483
Query: 327 STCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEK 386
DA SL F + D+ + +HG++KQ +R F+T
Sbjct: 484 DLLDATG-DSSLTLVFVETKRGASDLAYYLNRQNYEVVTIHGDLKQFEREKHLDLFRTGT 542
Query: 387 KALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRVGRTARLGERGDSLLFLQPVEMD 446
+L++T VAARGLD P VK +I YD + EYVHR+GRT R+G G + F +
Sbjct: 543 APILVATAVAARGLDIPNVKHVINYDLPSDVDEYVHRIGRTGRVGNVGLATSFFNDKNRN 602
Query: 447 YLQDL 451
++L
Sbjct: 603 IAREL 607
>UNIPROTKB|Q48PB7 [details] [associations]
symbol:PSPPH_0449 "ATP-dependent RNA helicase RhlE,
putative" species:264730 "Pseudomonas syringae pv. phaseolicola
1448A" [GO:0006139 "nucleobase-containing compound metabolic
process" evidence=ISS] [GO:0008026 "ATP-dependent helicase
activity" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:CP000058 GenomeReviews:CP000058_GR InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927
RefSeq:YP_272752.1 ProteinModelPortal:Q48PB7 GeneID:3558820
KEGG:psp:PSPPH_0449 PATRIC:19969930 OMA:DGDLMGF
ProtClustDB:CLSK865855 Uniprot:Q48PB7
Length = 625
Score = 294 (108.6 bits), Expect = 8.0e-36, Sum P(2) = 8.0e-36
Identities = 86/231 (37%), Positives = 120/231 (51%)
Query: 19 SFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPII 78
SF+SLGL L + E G+ PT VQ +AIP +L GR ++V A TGTGKT + PI+
Sbjct: 2 SFASLGLSEALVRAI-EAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL 60
Query: 79 NHL---------QSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVM 129
L Q + PR R LVL PTREL QV+E KL R V +
Sbjct: 61 ERLFPNGVPDKSQRHGPRQPR-----VLVLTPTRELAAQVHESF-KLYARDLKFVSACIF 114
Query: 130 GGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKE 189
GG + + + +G+ +LVA PGRLLD L S +++ ++ DEADR+L++GF +
Sbjct: 115 GGVGMNPQVQAMSRGVDVLVACPGRLLD-LAGQGSVDLSHVEILVLDEADRMLDMGFVHD 173
Query: 190 IEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETP 240
++++L L + KRQNLL SAT + + LA L P
Sbjct: 174 VKKVLARLPA---------------KRQNLLFSATFSNDITSLAGKLLHNP 209
Score = 163 (62.4 bits), Expect = 8.0e-36, Sum P(2) = 8.0e-36
Identities = 34/116 (29%), Positives = 59/116 (50%)
Query: 366 LHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRVG 425
+HGN Q R FK ++++TD+AARGLD ++ ++ ++ +YVHR+G
Sbjct: 279 IHGNKSQNARTKALADFKAGDVRIMVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIG 338
Query: 426 RTARLGERGDSLLFLQPVEMDYLQDLEKHGVSLTEYPLLKVLDSFPLYGQKPRVKK 481
RT R G G+++ + P E L+ +E+ L D + +KP V++
Sbjct: 339 RTGRAGRSGEAISLVAPDEEKLLKSIERMTKQKIADGDLMGFDITAVEAEKPEVRE 394
>DICTYBASE|DDB_G0270396 [details] [associations]
symbol:ddx49 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
dictyBase:DDB_G0270396 GO:GO:0005524 EMBL:AAFI02000005
GenomeReviews:CM000150_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 KO:K14778 OMA:FRNLCAI
RefSeq:XP_646762.1 HSSP:P60842 ProteinModelPortal:Q55BR9
PRIDE:Q55BR9 EnsemblProtists:DDB0234206 GeneID:8617735
KEGG:ddi:DDB_G0270396 ProtClustDB:CLSZ2846935 Uniprot:Q55BR9
Length = 508
Score = 269 (99.8 bits), Expect = 8.8e-36, Sum P(2) = 8.8e-36
Identities = 68/179 (37%), Positives = 101/179 (56%)
Query: 19 SFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPII 78
+F LGL + L ++ LGF+AP+ +QA IP IL GR ++ +A TG+GKT ++ PI+
Sbjct: 5 TFEELGLTTWLVANCKQ-LGFKAPSNIQANTIPEILKGRDIIASAKTGSGKTASFAIPIL 63
Query: 79 NHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEK 138
N L S P G FA++L PTREL +Q+ E + + + + V+GG + +
Sbjct: 64 NQL-SEDPY-----GVFAVILTPTRELAVQIGEQFNAIGAPMN-VNCSVVIGGIDNVTQA 116
Query: 139 ARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDIL 197
L K I+VATPGRL HL + ++++ DEADR+L F EI IL+ L
Sbjct: 117 LILDKRPHIIVATPGRLASHLNNGLKIALKFCKFLVLDEADRLLGEDFELEIASILEHL 175
Score = 186 (70.5 bits), Expect = 8.8e-36, Sum P(2) = 8.8e-36
Identities = 34/88 (38%), Positives = 56/88 (63%)
Query: 366 LHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRVG 425
LH + Q+ R FK+ K +L++TDVA+RGLD P V+ +I Y + + +Y+HRVG
Sbjct: 275 LHSFLDQKSRLAALKTFKSGKVKVLVATDVASRGLDIPDVQIVINYKLSNSSKDYIHRVG 334
Query: 426 RTARLGERGDSLLFLQPVEMDYLQDLEK 453
RTAR G G ++ F+ P ++ ++ +E+
Sbjct: 335 RTARFGRSGRAISFITPHDVSLIKGIEE 362
Score = 164 (62.8 bits), Expect = 8.4e-24, Sum P(2) = 8.4e-24
Identities = 50/150 (33%), Positives = 74/150 (49%)
Query: 93 GTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATP 152
G FA++L PTREL +Q+ E + + + + V+GG + + L K I+VATP
Sbjct: 72 GVFAVILTPTRELAVQIGEQFNAIGAPMN-VNCSVVIGGIDNVTQALILDKRPHIIVATP 130
Query: 153 GRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILGSRNIGSIGEGNEVS 212
GRL HL + ++++ DEADR+L F EI IL+ L
Sbjct: 131 GRLASHLNNGLKIALKFCKFLVLDEADRLLGEDFELEIASILEHLPPPE----------- 179
Query: 213 NVKRQNLLLSATLNEKVNHLAKISLETPVL 242
KRQ LL SAT+ + + L I+L P +
Sbjct: 180 --KRQTLLFSATMTKNLTKLDSIALNKPFI 207
Score = 52 (23.4 bits), Expect = 9.4e-22, Sum P(2) = 9.4e-22
Identities = 24/85 (28%), Positives = 39/85 (45%)
Query: 290 LVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQW---SP 346
L Q Y+ +P ++ L+ ILK +VF + C AV+ +L++ S
Sbjct: 220 LKQEYIYMPAPTKDCYLVYILKK----HEGSSAIVFVNNCYAVEAVKGMLNKLDIPSVSL 275
Query: 347 HSQPDMELKQLFLRCKTFRLHGNMK 371
HS D + + L KTF+ G +K
Sbjct: 276 HSFLDQKSRLAAL--KTFK-SGKVK 297
>UNIPROTKB|Q9KV52 [details] [associations]
symbol:rhlB "ATP-dependent RNA helicase RhlB"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0006401 "RNA catabolic process" evidence=ISS] HAMAP:MF_00661
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR023554 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0003723 GO:GO:0006401
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 OMA:EEEWPEK
KO:K03732 ProtClustDB:PRK04837 PIR:C82340 RefSeq:NP_229960.1
ProteinModelPortal:Q9KV52 DNASU:2614975 GeneID:2614975
KEGG:vch:VC0305 PATRIC:20079655 Uniprot:Q9KV52
Length = 438
Score = 289 (106.8 bits), Expect = 8.9e-36, Sum P(2) = 8.9e-36
Identities = 81/233 (34%), Positives = 129/233 (55%)
Query: 20 FSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIIN 79
F+ GL + D L E+ GF T +QA A+PV+LSG+ + A TGTGKT+A+L N
Sbjct: 11 FADFGLQPQVIDGL-EKKGFVYCTPIQALALPVLLSGQDIAGQAQTGTGKTLAFLTATFN 69
Query: 80 HLQSYSPRIDRSSGTF--ALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKE 137
HL + +P + + T A+++ PTREL +Q++ LL + GGE+ K+
Sbjct: 70 HLLT-TPAAEGRAETQPRAIIMAPTRELAIQIFNDAEPLLASTG-LKAALAYGGESYDKQ 127
Query: 138 KARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDIL 197
A+L+ G+ IL+ T GR++D K L+ +++ ++ DEADR+ +LGF K+I L
Sbjct: 128 LAKLQSGVDILIGTTGRIIDFYKQRVFNLN-HIQAVVLDEADRMFDLGFIKDIR----FL 182
Query: 198 GSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETP--VLIGLDEK 248
R + E + R N+L SATL+ +V LA + P V++ ++K
Sbjct: 183 FRR----MPEPKD-----RLNMLFSATLSYRVQELAFEHMNNPEHVVVEPEQK 226
Score = 155 (59.6 bits), Expect = 8.9e-36, Sum P(2) = 8.9e-36
Identities = 34/109 (31%), Positives = 55/109 (50%)
Query: 366 LHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRVG 425
L G++ Q+ R F +L++TDVAARGL P+V + YD + +YVHR+G
Sbjct: 286 LTGDVPQKKRERILEQFTQGDVDILVATDVAARGLHIPQVTHVFNYDLPDDCEDYVHRIG 345
Query: 426 RTARLGERGDSLLFL---QPVEMDYLQDLEKHGVSLTEYPLLKVLDSFP 471
RT R G G S+ F + + ++ +H + ++Y +L P
Sbjct: 346 RTGRAGASGHSISFACEEYAINLPAIESYIEHAIPTSDYDPSALLTDLP 394
>TIGR_CMR|VC_0305 [details] [associations]
symbol:VC_0305 "ATP-dependent RNA helicase RhlB"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0006401
"RNA catabolic process" evidence=ISS] HAMAP:MF_00661
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR023554 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0003723 GO:GO:0006401
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 OMA:EEEWPEK
KO:K03732 ProtClustDB:PRK04837 PIR:C82340 RefSeq:NP_229960.1
ProteinModelPortal:Q9KV52 DNASU:2614975 GeneID:2614975
KEGG:vch:VC0305 PATRIC:20079655 Uniprot:Q9KV52
Length = 438
Score = 289 (106.8 bits), Expect = 8.9e-36, Sum P(2) = 8.9e-36
Identities = 81/233 (34%), Positives = 129/233 (55%)
Query: 20 FSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIIN 79
F+ GL + D L E+ GF T +QA A+PV+LSG+ + A TGTGKT+A+L N
Sbjct: 11 FADFGLQPQVIDGL-EKKGFVYCTPIQALALPVLLSGQDIAGQAQTGTGKTLAFLTATFN 69
Query: 80 HLQSYSPRIDRSSGTF--ALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKE 137
HL + +P + + T A+++ PTREL +Q++ LL + GGE+ K+
Sbjct: 70 HLLT-TPAAEGRAETQPRAIIMAPTRELAIQIFNDAEPLLASTG-LKAALAYGGESYDKQ 127
Query: 138 KARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDIL 197
A+L+ G+ IL+ T GR++D K L+ +++ ++ DEADR+ +LGF K+I L
Sbjct: 128 LAKLQSGVDILIGTTGRIIDFYKQRVFNLN-HIQAVVLDEADRMFDLGFIKDIR----FL 182
Query: 198 GSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETP--VLIGLDEK 248
R + E + R N+L SATL+ +V LA + P V++ ++K
Sbjct: 183 FRR----MPEPKD-----RLNMLFSATLSYRVQELAFEHMNNPEHVVVEPEQK 226
Score = 155 (59.6 bits), Expect = 8.9e-36, Sum P(2) = 8.9e-36
Identities = 34/109 (31%), Positives = 55/109 (50%)
Query: 366 LHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRVG 425
L G++ Q+ R F +L++TDVAARGL P+V + YD + +YVHR+G
Sbjct: 286 LTGDVPQKKRERILEQFTQGDVDILVATDVAARGLHIPQVTHVFNYDLPDDCEDYVHRIG 345
Query: 426 RTARLGERGDSLLFL---QPVEMDYLQDLEKHGVSLTEYPLLKVLDSFP 471
RT R G G S+ F + + ++ +H + ++Y +L P
Sbjct: 346 RTGRAGASGHSISFACEEYAINLPAIESYIEHAIPTSDYDPSALLTDLP 394
>RGD|1559513 [details] [associations]
symbol:RGD1559513 "similar to DEAD (Asp-Glu-Ala-Asp) box
polypeptide 41" species:10116 "Rattus norvegicus" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR001878 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00343
SMART:SM00490 RGD:1559513 GO:GO:0005524 GO:GO:0008270 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 OrthoDB:EOG4CVG6K OMA:MEETETI
IPI:IPI00958592 Ensembl:ENSRNOT00000033492 UCSC:RGD:1559513
NextBio:667517 Uniprot:D4ADJ9
Length = 621
Score = 272 (100.8 bits), Expect = 9.8e-36, Sum P(2) = 9.8e-36
Identities = 78/234 (33%), Positives = 124/234 (52%)
Query: 19 SFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPII 78
SF + L + + L+++ G PT +Q Q IP ILSGR ++ A TG+GKT+ + P+I
Sbjct: 181 SFKEMKLPAAILRGLKKK-GILHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVI 239
Query: 79 NHLQSYSPRI--DRSSGTFALVLVPTRELCLQVYEILH---KLLHRFH--WIVPGYVMGG 131
R+ + G + L++ P+REL Q + IL +LL + +GG
Sbjct: 240 MFCLEQEKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLHCALCIGG 299
Query: 132 ENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIE 191
+ ++ +R G+ I+VATPGRL+D L+ L R++ DEADR++++GF +I
Sbjct: 300 VSLKEQMETMRHGVHIMVATPGRLMDLLQKKMVSLDI-CRYLALDEADRMIDMGFEGDI- 357
Query: 192 EILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGL 245
R I S +G +RQ LL SAT+ +K+ + AK +L PV I +
Sbjct: 358 --------RTIFSYFKG------QRQTLLFSATMPKKIQNFAKSALVKPVTINV 397
Score = 187 (70.9 bits), Expect = 9.8e-36, Sum P(2) = 9.8e-36
Identities = 41/105 (39%), Positives = 61/105 (58%)
Query: 366 LHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRVG 425
+HG QE+R AF+ KK +L++TDVA++GLDFP ++ +I YD E YVHR+G
Sbjct: 461 IHGGKDQEERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIG 520
Query: 426 RTARLGERGDSLLFLQPV-EMDYLQDLEKHGVSLTEY--PLLKVL 467
RT R G G + F+ + L DL+ + + P+L+VL
Sbjct: 521 RTGRSGNTGIATTFINKACDESVLMDLKALLLEAKQKVPPVLQVL 565
Score = 41 (19.5 bits), Expect = 8.3e-11, Sum P(2) = 8.3e-11
Identities = 12/32 (37%), Positives = 14/32 (43%)
Query: 122 WIVPGYVMGGENRSKEKARLRKGISILVATPG 153
W P YV+ E R+RK ILV G
Sbjct: 145 WTPPRYVLSMSEERHE--RVRKKYHILVEGDG 174
>POMBASE|SPBC691.04 [details] [associations]
symbol:SPBC691.04 "mitochondrial ATP-dependent RNA
helicase Mss116 (predicted)" species:4896 "Schizosaccharomyces
pombe" [GO:0003723 "RNA binding" evidence=IEA] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0005524
"ATP binding" evidence=ISM] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0005759 "mitochondrial matrix" evidence=ISS]
[GO:0006417 "regulation of translation" evidence=IEA] [GO:0008380
"RNA splicing" evidence=ISS] [GO:0032543 "mitochondrial
translation" evidence=NAS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 PomBase:SPBC691.04 GO:GO:0005524
GO:GO:0006417 GO:GO:0008380 GO:GO:0005759 EMBL:CU329671
GO:GO:0006397 GenomeReviews:CU329671_GR GO:GO:0003723 GO:GO:0032543
EMBL:AB004535 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
RefSeq:NP_595596.1 ProteinModelPortal:O13622 STRING:O13622
EnsemblFungi:SPBC691.04.1 GeneID:2541136 KEGG:spo:SPBC691.04
OrthoDB:EOG437VPN NextBio:20802249 Uniprot:O13622
Length = 535
Score = 266 (98.7 bits), Expect = 1.1e-35, Sum P(2) = 1.1e-35
Identities = 83/237 (35%), Positives = 127/237 (53%)
Query: 20 FSSLG-LHSTLCDQLRERLGFEAPTKVQAQAI-PVILSGRHVLVNAATGTGKTVAYLAPI 77
FS + L ST + L R GFE T VQ + + V + + +V A TGTGKT+A+L
Sbjct: 39 FSEVASLSSTFKNSL-SRAGFEKMTPVQQRVLNEVFPNEENAVVQAKTGTGKTLAFLLVA 97
Query: 78 INHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKE 137
+ PR++ SS +++L PTREL LQ++E KL + I Y +GG ++ +E
Sbjct: 98 FKDVLKGKPRLN-SSKIHSVILSPTRELALQIFEEARKLTYGTG-IRVSYAIGGNSKMRE 155
Query: 138 KARLRKG-ISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDI 196
+ +R+G ++L+ATPGRL DHL++ + I DEADR++++GF E IL+I
Sbjct: 156 ENAIRRGNANLLIATPGRLEDHLQNPRILESLSTDSFILDEADRLMDMGFA---ESILNI 212
Query: 197 LGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPV-LIG-LDEKKLP 251
V+ K + L SAT+ KV+++ + L T LI LD + P
Sbjct: 213 -----------HEAVTTTKTRKLCFSATMPPKVSNVFRGILGTDFKLINCLDPNEPP 258
Score = 190 (71.9 bits), Expect = 1.1e-35, Sum P(2) = 1.1e-35
Identities = 48/148 (32%), Positives = 75/148 (50%)
Query: 307 LSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRL 366
LS+L+ L + S +++VF T VDF +L H LK + C F L
Sbjct: 280 LSLLQQLTSSNPSSRIIVFLPTISMVDFVGGVLEN-----H------LK---IPC--FIL 323
Query: 367 HGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRVGR 426
H + RR+ +F+ + +L +TDV ARG+DFP + ++Q +Y+HR+GR
Sbjct: 324 HSGLTTAQRRSITESFRKCQSGILFATDVVARGMDFPNITQVVQITGPSNTDDYIHRIGR 383
Query: 427 TARLGERGDSLLFLQPVEMDYLQDLEKH 454
T R G+ G++ L L E +L + KH
Sbjct: 384 TGRAGKTGEAYLILLEQEKPFLNSI-KH 410
>TAIR|locus:2159527 [details] [associations]
symbol:STRS2 "STRESS RESPONSE SUPPRESSOR 2" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA;ISS] [GO:0003723 "RNA binding" evidence=IDA]
[GO:0009409 "response to cold" evidence=IEP] [GO:0009414 "response
to water deprivation" evidence=IMP] [GO:0009651 "response to salt
stress" evidence=IMP] [GO:0042991 "transcription factor import into
nucleus" evidence=RCA] InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0009651 GO:GO:0009409 GO:GO:0009414 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268799 EMBL:AB006697 EMBL:AJ010473 EMBL:AY035114
EMBL:AY142638 IPI:IPI00534387 PIR:T51348 RefSeq:NP_196479.1
UniGene:At.47465 ProteinModelPortal:Q94C75 SMR:Q94C75 STRING:Q94C75
PRIDE:Q94C75 EnsemblPlants:AT5G08620.1 GeneID:830763
KEGG:ath:AT5G08620 GeneFarm:945 TAIR:At5g08620 InParanoid:Q94C75
OMA:RELACQA PhylomeDB:Q94C75 ProtClustDB:CLSN2687472
Genevestigator:Q94C75 GermOnline:AT5G08620 Uniprot:Q94C75
Length = 563
Score = 285 (105.4 bits), Expect = 1.1e-35, Sum P(3) = 1.1e-35
Identities = 79/210 (37%), Positives = 116/210 (55%)
Query: 35 ERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSP--RIDRSS 92
E GF+ T VQ +P+IL G+ +L A TGTGKTVA+L P I + P R +R
Sbjct: 96 EDAGFKTMTVVQEATLPLILQGKDILAKAKTGTGKTVAFLLPSIEAVIKAPPASRDNRHP 155
Query: 93 GTFALVLVPTRELCLQVYEILHKLLHRFH-WIVPGYVMGGENRSKEKARLRKG-ISILVA 150
LV+ PTREL Q + LL ++H I V+GG E+ RL+K ILVA
Sbjct: 156 PIIVLVVCPTRELACQAAAEANILL-KYHPSIGVQVVIGGTKLPTEQRRLQKSPCQILVA 214
Query: 151 TPGRLLDHLKHTSSFLHT--NLRWIIFDEADRILELGFGKEIEEILDILGSRNIGSIGEG 208
TPGRL DH+ +TS F ++ ++ DEAD +L++GF +EIE I I ++ +
Sbjct: 215 TPGRLKDHIDNTSGFATRLMGVKVLVLDEADHLLDMGFRREIERI--------IAAVPK- 265
Query: 209 NEVSNVKRQNLLLSATLNEKVNHLAKISLE 238
+RQ L SAT++++V + ++L+
Sbjct: 266 ------QRQTFLFSATVSDEVRQICHVALK 289
Score = 164 (62.8 bits), Expect = 1.1e-35, Sum P(3) = 1.1e-35
Identities = 30/97 (30%), Positives = 54/97 (55%)
Query: 366 LHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRVG 425
+H Q R F+ K +L+++DV+ARG+D+P V ++Q + +Y+HR+G
Sbjct: 368 IHSRKPQSYRTRVSDEFRKSKSIILVTSDVSARGVDYPDVSLVVQMGLPSDREQYIHRLG 427
Query: 426 RTARLGERGDSLLFLQPVEMDYLQDLEKHGVSLTEYP 462
RT R G+ G+ +L L P E +L ++ ++ + P
Sbjct: 428 RTGRKGKEGEGVLLLAPWEEYFLSSVKDLPITKSSLP 464
Score = 42 (19.8 bits), Expect = 1.1e-35, Sum P(3) = 1.1e-35
Identities = 11/38 (28%), Positives = 20/38 (52%)
Query: 292 QRYVKVPCGSRLAVLLSILK-HLFDTEVSQKLVVFFST 328
Q Y+ ++L +LK H+ D V K+++F +T
Sbjct: 311 QMYMIASLDRHFSLLYGLLKKHITDN-VGYKVIIFCTT 347
>POMBASE|SPBP8B7.16c [details] [associations]
symbol:dbp2 "ATP-dependent RNA helicase Dbp2"
species:4896 "Schizosaccharomyces pombe" [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISO] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0005524 "ATP binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0005829 "cytosol" evidence=IDA]
[GO:0006364 "rRNA processing" evidence=ISO] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 PomBase:SPBP8B7.16c
GO:GO:0005829 GO:GO:0005524 GO:GO:0005730 GO:GO:0000184
EMBL:CU329671 GenomeReviews:CU329671_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268804 KO:K12823 OMA:IDAMSGY OrthoDB:EOG47SWP6
EMBL:X52648 EMBL:L11574 PIR:T40810 RefSeq:NP_596523.1
ProteinModelPortal:P24782 IntAct:P24782 STRING:P24782 PRIDE:P24782
EnsemblFungi:SPBP8B7.16c.1 GeneID:2541383 KEGG:spo:SPBP8B7.16c
NextBio:20802492 Uniprot:P24782
Length = 550
Score = 292 (107.8 bits), Expect = 1.3e-35, Sum P(2) = 1.3e-35
Identities = 67/177 (37%), Positives = 105/177 (59%)
Query: 19 SFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPII 78
+F G + + ++++ LGFEAPT +Q QA P+ +SGR ++ +ATG+GKT++Y P I
Sbjct: 123 TFEEAGFPNYVLKEVKQ-LGFEAPTPIQQQAWPMAMSGRDMVGISATGSGKTLSYCLPAI 181
Query: 79 NHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEK 138
H+ + P + G LVL PTREL +Q+ + K + I V GG R +
Sbjct: 182 VHINA-QPLLSPGDGPIVLVLAPTRELAVQIQQECTKF-GKSSRIRNTCVYGGVPRGPQI 239
Query: 139 ARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILD 195
L +G+ I +ATPGRLLD L + L + +++ DEADR+L++GF +I +I+D
Sbjct: 240 RDLIRGVEICIATPGRLLDMLDSNKTNLR-RVTYLVLDEADRMLDMGFEPQIRKIVD 295
Score = 160 (61.4 bits), Expect = 1.3e-35, Sum P(2) = 1.3e-35
Identities = 27/74 (36%), Positives = 45/74 (60%)
Query: 366 LHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRVG 425
+HG+ Q++R F+T K ++++TDVA+RG+D + + YD G +YVHR+G
Sbjct: 399 IHGDKAQDERDWVLNEFRTGKSPIMVATDVASRGIDVKGITHVFNYDFPGNTEDYVHRIG 458
Query: 426 RTARLGERGDSLLF 439
RT R G +G + +
Sbjct: 459 RTGRAGAKGTAYTY 472
Score = 129 (50.5 bits), Expect = 4.2e-17, Sum P(2) = 4.2e-17
Identities = 36/107 (33%), Positives = 57/107 (53%)
Query: 128 VMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFG 187
V GG R + L +G+ I +ATPGRLLD L + L + +++ DEADR+L++GF
Sbjct: 229 VYGGVPRGPQIRDLIRGVEICIATPGRLLDMLDSNKTNLR-RVTYLVLDEADRMLDMGFE 287
Query: 188 KEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAK 234
+I +I+D + RQ ++ SAT ++V LA+
Sbjct: 288 PQIRKIVDQI---------------RPDRQTVMFSATWPKEVQRLAR 319
Score = 44 (20.5 bits), Expect = 2.7e-08, Sum P(2) = 2.7e-08
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 169 NLRWII--FDEADRILELGFGKEIEEIL 194
N++ I+ D AD+ LG K+IEE+L
Sbjct: 340 NIKQIVEVVDNADKRARLG--KDIEEVL 365
>UNIPROTKB|Q9KU63 [details] [associations]
symbol:VC_0660 "ATP-dependent RNA helicase SrmB"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0016070 "RNA metabolic process" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:AE003852 GenomeReviews:AE003852_GR
GO:GO:0003676 GO:GO:0016070 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 InterPro:IPR014014 PROSITE:PS51195
HSSP:P10081 OMA:PLAMDQR KO:K05590 ProtClustDB:PRK11192 PIR:F82295
RefSeq:NP_230309.1 ProteinModelPortal:Q9KU63 DNASU:2615450
GeneID:2615450 KEGG:vch:VC0660 PATRIC:20080435 Uniprot:Q9KU63
Length = 423
Score = 281 (104.0 bits), Expect = 1.4e-35, Sum P(2) = 1.4e-35
Identities = 69/176 (39%), Positives = 100/176 (56%)
Query: 19 SFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPII 78
+F+ L L L + + E +GF PT+VQA+AIP L GR VL +A TGTGKT A++ P +
Sbjct: 4 TFADLELDPILLEAIEE-MGFSRPTQVQAEAIPQALDGRDVLASAPTGTGKTAAFVIPAL 62
Query: 79 NHLQSYSPRIDRSSGTFA-LVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKE 137
+L + PR R +G L+L PTREL +QV E L + + GG +
Sbjct: 63 QYLLDF-PR--RKAGPARILILTPTRELAMQVAEQAQALAKNTRLNI-FTITGGVQYQEH 118
Query: 138 KARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEI 193
L I+VATPGRLL+++ F + W+I DEADR+L++GFG ++ +
Sbjct: 119 ADILATTQDIVVATPGRLLEYID-AERFDCRAIEWLILDEADRMLDMGFGPTVDRL 173
Score = 161 (61.7 bits), Expect = 1.4e-35, Sum P(2) = 1.4e-35
Identities = 38/129 (29%), Positives = 67/129 (51%)
Query: 353 ELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYD 412
EL++ + C + G M Q+ R F+ +LL+TDVAARG+D P + +I +D
Sbjct: 265 ELEKAQIPCAW--IQGEMPQDRRNNAISRFREGDVNILLATDVAARGIDVPDISHVINFD 322
Query: 413 SAGEATEYVHRVGRTARLGERGDSLLFLQPVEMDYLQDLEKHGVSLTEYPLLKVLDSFPL 472
A Y+HR+GRT R G++G ++ ++ + + +E++ + E + +D
Sbjct: 323 LPRSADVYLHRIGRTGRAGKKGIAISLVEAHDQPMMARVERY---IKEEVKERFIDGLRP 379
Query: 473 YGQKPRVKK 481
+KP KK
Sbjct: 380 KHKKPVFKK 388
Score = 106 (42.4 bits), Expect = 3.1e-15, Sum P(2) = 3.1e-15
Identities = 39/145 (26%), Positives = 65/145 (44%)
Query: 128 VMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFG 187
+ GG + L I+VATPGRLL+++ F + W+I DEADR+L++GFG
Sbjct: 109 ITGGVQYQEHADILATTQDIVVATPGRLLEYID-AERFDCRAIEWLILDEADRMLDMGFG 167
Query: 188 KEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEK-VNHLAKISLETPVLIGLD 246
++ + + ++Q LL SATL + V L+ P + +
Sbjct: 168 PTVDRL---------------STECRWRKQTLLFSATLEGRGVEGFTADLLKDPAHVDAE 212
Query: 247 EKKLPEDKSHVRFGSLESDVKEEVE 271
+ E K ++ D+ +VE
Sbjct: 213 PPRR-ERKKISQWYHRADDMPHKVE 236
>TIGR_CMR|VC_0660 [details] [associations]
symbol:VC_0660 "ATP-dependent RNA helicase SrmB"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0003676 GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 OMA:PLAMDQR
KO:K05590 ProtClustDB:PRK11192 PIR:F82295 RefSeq:NP_230309.1
ProteinModelPortal:Q9KU63 DNASU:2615450 GeneID:2615450
KEGG:vch:VC0660 PATRIC:20080435 Uniprot:Q9KU63
Length = 423
Score = 281 (104.0 bits), Expect = 1.4e-35, Sum P(2) = 1.4e-35
Identities = 69/176 (39%), Positives = 100/176 (56%)
Query: 19 SFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPII 78
+F+ L L L + + E +GF PT+VQA+AIP L GR VL +A TGTGKT A++ P +
Sbjct: 4 TFADLELDPILLEAIEE-MGFSRPTQVQAEAIPQALDGRDVLASAPTGTGKTAAFVIPAL 62
Query: 79 NHLQSYSPRIDRSSGTFA-LVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKE 137
+L + PR R +G L+L PTREL +QV E L + + GG +
Sbjct: 63 QYLLDF-PR--RKAGPARILILTPTRELAMQVAEQAQALAKNTRLNI-FTITGGVQYQEH 118
Query: 138 KARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEI 193
L I+VATPGRLL+++ F + W+I DEADR+L++GFG ++ +
Sbjct: 119 ADILATTQDIVVATPGRLLEYID-AERFDCRAIEWLILDEADRMLDMGFGPTVDRL 173
Score = 161 (61.7 bits), Expect = 1.4e-35, Sum P(2) = 1.4e-35
Identities = 38/129 (29%), Positives = 67/129 (51%)
Query: 353 ELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYD 412
EL++ + C + G M Q+ R F+ +LL+TDVAARG+D P + +I +D
Sbjct: 265 ELEKAQIPCAW--IQGEMPQDRRNNAISRFREGDVNILLATDVAARGIDVPDISHVINFD 322
Query: 413 SAGEATEYVHRVGRTARLGERGDSLLFLQPVEMDYLQDLEKHGVSLTEYPLLKVLDSFPL 472
A Y+HR+GRT R G++G ++ ++ + + +E++ + E + +D
Sbjct: 323 LPRSADVYLHRIGRTGRAGKKGIAISLVEAHDQPMMARVERY---IKEEVKERFIDGLRP 379
Query: 473 YGQKPRVKK 481
+KP KK
Sbjct: 380 KHKKPVFKK 388
Score = 106 (42.4 bits), Expect = 3.1e-15, Sum P(2) = 3.1e-15
Identities = 39/145 (26%), Positives = 65/145 (44%)
Query: 128 VMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFG 187
+ GG + L I+VATPGRLL+++ F + W+I DEADR+L++GFG
Sbjct: 109 ITGGVQYQEHADILATTQDIVVATPGRLLEYID-AERFDCRAIEWLILDEADRMLDMGFG 167
Query: 188 KEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEK-VNHLAKISLETPVLIGLD 246
++ + + ++Q LL SATL + V L+ P + +
Sbjct: 168 PTVDRL---------------STECRWRKQTLLFSATLEGRGVEGFTADLLKDPAHVDAE 212
Query: 247 EKKLPEDKSHVRFGSLESDVKEEVE 271
+ E K ++ D+ +VE
Sbjct: 213 PPRR-ERKKISQWYHRADDMPHKVE 236
>UNIPROTKB|Q8EJQ5 [details] [associations]
symbol:rhlB "ATP-dependent RNA helicase RhlB"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] HAMAP:MF_00661 InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR023554
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003723 EMBL:AE014299
GenomeReviews:AE014299_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268807 KO:K03732 ProtClustDB:PRK04837
RefSeq:NP_716045.1 ProteinModelPortal:Q8EJQ5 GeneID:1168284
KEGG:son:SO_0407 PATRIC:23520517 OMA:PANAERQ Uniprot:Q8EJQ5
Length = 439
Score = 293 (108.2 bits), Expect = 1.7e-35, Sum P(2) = 1.7e-35
Identities = 82/252 (32%), Positives = 136/252 (53%)
Query: 20 FSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIIN 79
F+ L LH + L E GFE T +QA ++PV+L + + A TGTGKT+A+L N
Sbjct: 11 FADLPLHPEVKQALAEN-GFEFCTPIQALSLPVLLQSKDIAGQAQTGTGKTMAFLVATFN 69
Query: 80 HLQSYS-PRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEK 138
HL S S P + + A+++ PTREL +Q+ + LL + + G V GGE+ ++
Sbjct: 70 HLLSSSIPEGRQLNQPRAIIMAPTRELAIQIAKDAI-LLAKHTRLKVGIVYGGESYDVQR 128
Query: 139 ARLRKGISILVATPGRLLDHLKHTSSFLHTN-LRWIIFDEADRILELGFGKEIEEILDIL 197
L +G+ IL+ T GR++D+++ ++ N ++ ++ DEADR+ +LGF K+I +
Sbjct: 129 KVLDQGVDILIGTTGRIIDYVRQ--GIINLNAIQAVVLDEADRMFDLGFIKDIRFLF--- 183
Query: 198 GSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGL--DEKKLPEDKS 255
R + + + R N+L SATL+ KV LA + PV + + +EK K
Sbjct: 184 --RRMPNADQ--------RLNMLFSATLSMKVQELAYDHMNDPVKVEIAPEEKTSKNIKE 233
Query: 256 HVRFGSLESDVK 267
+ + S E ++
Sbjct: 234 EIFYPSQEDKMR 245
Score = 147 (56.8 bits), Expect = 1.7e-35, Sum P(2) = 1.7e-35
Identities = 34/109 (31%), Positives = 55/109 (50%)
Query: 366 LHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRVG 425
L G++ Q+ R F + +L++TDVAARGL V + YD + +YVHR+G
Sbjct: 286 LTGDVPQKKRIRILEQFTQGQLDILVATDVAARGLHISDVSHVYNYDLPDDCEDYVHRIG 345
Query: 426 RTARLGERGDSLLFL---QPVEMDYLQDLEKHGVSLTEYPLLKVLDSFP 471
RT R G +G S+ F + + ++ H + ++ Y +LD P
Sbjct: 346 RTGRAGNKGVSVSFACEEYALNLPAIETYINHSIPVSNYDRDALLDDIP 394
>TIGR_CMR|SO_0407 [details] [associations]
symbol:SO_0407 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] HAMAP:MF_00661 InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR023554
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003723 EMBL:AE014299
GenomeReviews:AE014299_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268807 KO:K03732 ProtClustDB:PRK04837
RefSeq:NP_716045.1 ProteinModelPortal:Q8EJQ5 GeneID:1168284
KEGG:son:SO_0407 PATRIC:23520517 OMA:PANAERQ Uniprot:Q8EJQ5
Length = 439
Score = 293 (108.2 bits), Expect = 1.7e-35, Sum P(2) = 1.7e-35
Identities = 82/252 (32%), Positives = 136/252 (53%)
Query: 20 FSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIIN 79
F+ L LH + L E GFE T +QA ++PV+L + + A TGTGKT+A+L N
Sbjct: 11 FADLPLHPEVKQALAEN-GFEFCTPIQALSLPVLLQSKDIAGQAQTGTGKTMAFLVATFN 69
Query: 80 HLQSYS-PRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEK 138
HL S S P + + A+++ PTREL +Q+ + LL + + G V GGE+ ++
Sbjct: 70 HLLSSSIPEGRQLNQPRAIIMAPTRELAIQIAKDAI-LLAKHTRLKVGIVYGGESYDVQR 128
Query: 139 ARLRKGISILVATPGRLLDHLKHTSSFLHTN-LRWIIFDEADRILELGFGKEIEEILDIL 197
L +G+ IL+ T GR++D+++ ++ N ++ ++ DEADR+ +LGF K+I +
Sbjct: 129 KVLDQGVDILIGTTGRIIDYVRQ--GIINLNAIQAVVLDEADRMFDLGFIKDIRFLF--- 183
Query: 198 GSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGL--DEKKLPEDKS 255
R + + + R N+L SATL+ KV LA + PV + + +EK K
Sbjct: 184 --RRMPNADQ--------RLNMLFSATLSMKVQELAYDHMNDPVKVEIAPEEKTSKNIKE 233
Query: 256 HVRFGSLESDVK 267
+ + S E ++
Sbjct: 234 EIFYPSQEDKMR 245
Score = 147 (56.8 bits), Expect = 1.7e-35, Sum P(2) = 1.7e-35
Identities = 34/109 (31%), Positives = 55/109 (50%)
Query: 366 LHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRVG 425
L G++ Q+ R F + +L++TDVAARGL V + YD + +YVHR+G
Sbjct: 286 LTGDVPQKKRIRILEQFTQGQLDILVATDVAARGLHISDVSHVYNYDLPDDCEDYVHRIG 345
Query: 426 RTARLGERGDSLLFL---QPVEMDYLQDLEKHGVSLTEYPLLKVLDSFP 471
RT R G +G S+ F + + ++ H + ++ Y +LD P
Sbjct: 346 RTGRAGNKGVSVSFACEEYALNLPAIETYINHSIPVSNYDRDALLDDIP 394
>RGD|1308685 [details] [associations]
symbol:Ddx23 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 23"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005682 "U5 snRNP"
evidence=IEA;ISO] [GO:0005739 "mitochondrion" evidence=IEA;ISO]
[GO:0005886 "plasma membrane" evidence=IEA;ISO] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISO] [GO:0071013
"catalytic step 2 spliceosome" evidence=IEA;ISO] [GO:0005730
"nucleolus" evidence=ISO] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 RGD:1308685 GO:GO:0005524
GO:GO:0003676 GeneTree:ENSGT00690000102171 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:CH474035 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 KO:K12858 CTD:9416 OMA:PIRNWKE
RefSeq:NP_001100263.2 UniGene:Rn.2319 Ensembl:ENSRNOT00000055529
GeneID:300208 KEGG:rno:300208 NextBio:646540 Uniprot:G3V9M1
Length = 819
Score = 293 (108.2 bits), Expect = 1.7e-35, Sum P(2) = 1.7e-35
Identities = 78/252 (30%), Positives = 139/252 (55%)
Query: 35 ERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDR---- 90
++ G++ PT +Q QAIP+ L R ++ A TG+GKT A+L P++ + + P+IDR
Sbjct: 406 DKCGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLVWITTL-PKIDRIEES 464
Query: 91 SSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVA 150
G +A++L PTREL Q+ E K I V+GG +R + RLR G I++A
Sbjct: 465 DQGPYAIILAPTRELAQQIEEETIKFGKPLG-IRTVAVIGGISREDQGFRLRMGCEIVIA 523
Query: 151 TPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILG-SRNIGSIGEGN 209
TPGRL+D L++ L + +++ DEADR++++GF ++++IL+ + S E
Sbjct: 524 TPGRLIDVLENRYLVL-SRCTYVVLDEADRMIDMGFEPDVQKILEHMPVSNQKPDTDEAE 582
Query: 210 E----VSNVK------RQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLPEDKSHVR- 258
+ ++N + RQ ++ +AT+ V LA+ L P ++ + P ++ +
Sbjct: 583 DPEKMLANFESGKHKYRQTVMFTATMPPAVERLARSYLRRPAVVYIGSAGKPHERVEQKV 642
Query: 259 FGSLESDVKEEV 270
F ES+ ++++
Sbjct: 643 FLMSESEKRKKL 654
Score = 166 (63.5 bits), Expect = 1.7e-35, Sum P(2) = 1.7e-35
Identities = 32/88 (36%), Positives = 48/88 (54%)
Query: 366 LHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRVG 425
LHG QE R K K +L++TDVA RG+D V ++ YD A +Y+HR+G
Sbjct: 693 LHGGKGQEQREFALSNLKAGAKDILVATDVAGRGIDIQDVSMVVNYDMAKNIEDYIHRIG 752
Query: 426 RTARLGERGDSLLFLQPVEMDYLQDLEK 453
RT R G+ G ++ FL + +L++
Sbjct: 753 RTGRAGKSGVAITFLTKEDSAVFYELKQ 780
Score = 37 (18.1 bits), Expect = 9.7e-08, Sum P(2) = 9.7e-08
Identities = 7/12 (58%), Positives = 10/12 (83%)
Query: 132 ENRSKEKARLRK 143
E + +E+ARLRK
Sbjct: 330 EEKEQEEARLRK 341
>UNIPROTKB|A6QLB2 [details] [associations]
symbol:DDX23 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0005886 "plasma membrane" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IEA] [GO:0005682 "U5 snRNP" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005739 GO:GO:0005886
GO:GO:0005524 GO:GO:0005682 GO:GO:0003676 GO:GO:0071013
GeneTree:ENSGT00690000102171 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K12858 CTD:9416 HOGENOM:HOG000268796
HOVERGEN:HBG102054 OMA:PIRNWKE OrthoDB:EOG46T312 EMBL:DAAA02012954
EMBL:BC147902 IPI:IPI00866828 RefSeq:NP_001095672.1
UniGene:Bt.14027 STRING:A6QLB2 Ensembl:ENSBTAT00000029071
GeneID:537395 KEGG:bta:537395 InParanoid:A6QLB2 NextBio:20877127
Uniprot:A6QLB2
Length = 820
Score = 293 (108.2 bits), Expect = 1.7e-35, Sum P(2) = 1.7e-35
Identities = 78/252 (30%), Positives = 139/252 (55%)
Query: 35 ERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDR---- 90
++ G++ PT +Q QAIP+ L R ++ A TG+GKT A+L P++ + + P+IDR
Sbjct: 407 DKCGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLVWITTL-PKIDRIEES 465
Query: 91 SSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVA 150
G +A++L PTREL Q+ E K I V+GG +R + RLR G I++A
Sbjct: 466 DQGPYAIILAPTRELAQQIEEETIKFGKPLG-IRTVAVIGGISREDQGFRLRMGCEIVIA 524
Query: 151 TPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILG-SRNIGSIGEGN 209
TPGRL+D L++ L + +++ DEADR++++GF ++++IL+ + S E
Sbjct: 525 TPGRLIDVLENRYLVL-SRCTYVVLDEADRMIDMGFEPDVQKILEHMPVSNQKPDTDEAE 583
Query: 210 E----VSNVK------RQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLPEDKSHVR- 258
+ ++N + RQ ++ +AT+ V LA+ L P ++ + P ++ +
Sbjct: 584 DPEKMLANFESGKHKYRQTVMFTATMPPAVERLARSYLRRPAVVYIGSAGKPHERVEQKV 643
Query: 259 FGSLESDVKEEV 270
F ES+ ++++
Sbjct: 644 FLMSESEKRKKL 655
Score = 166 (63.5 bits), Expect = 1.7e-35, Sum P(2) = 1.7e-35
Identities = 32/88 (36%), Positives = 48/88 (54%)
Query: 366 LHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRVG 425
LHG QE R K K +L++TDVA RG+D V ++ YD A +Y+HR+G
Sbjct: 694 LHGGKGQEQREFALSNLKAGAKDILVATDVAGRGIDIQDVSMVVNYDMAKNIEDYIHRIG 753
Query: 426 RTARLGERGDSLLFLQPVEMDYLQDLEK 453
RT R G+ G ++ FL + +L++
Sbjct: 754 RTGRAGKSGVAITFLTKEDSAVFYELKQ 781
Score = 37 (18.1 bits), Expect = 9.8e-08, Sum P(2) = 9.8e-08
Identities = 7/12 (58%), Positives = 10/12 (83%)
Query: 132 ENRSKEKARLRK 143
E + +E+ARLRK
Sbjct: 331 EEKEQEEARLRK 342
>UNIPROTKB|E2RTL6 [details] [associations]
symbol:DDX23 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0005886 "plasma membrane" evidence=IEA]
[GO:0005739 "mitochondrion" evidence=IEA] [GO:0005682 "U5 snRNP"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005739
GO:GO:0005886 GO:GO:0005524 GO:GO:0005682 GO:GO:0003676
GO:GO:0071013 GeneTree:ENSGT00690000102171 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 KO:K12858 CTD:9416 OMA:PIRNWKE EMBL:AAEX03015077
RefSeq:XP_851051.1 ProteinModelPortal:E2RTL6
Ensembl:ENSCAFT00000013894 GeneID:477624 KEGG:cfa:477624
NextBio:20853071 Uniprot:E2RTL6
Length = 820
Score = 293 (108.2 bits), Expect = 1.7e-35, Sum P(2) = 1.7e-35
Identities = 78/252 (30%), Positives = 139/252 (55%)
Query: 35 ERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDR---- 90
++ G++ PT +Q QAIP+ L R ++ A TG+GKT A+L P++ + + P+IDR
Sbjct: 407 DKCGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLVWITTL-PKIDRIEES 465
Query: 91 SSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVA 150
G +A++L PTREL Q+ E K I V+GG +R + RLR G I++A
Sbjct: 466 DQGPYAIILAPTRELAQQIEEETIKFGKPLG-IRTVAVIGGISREDQGFRLRMGCEIVIA 524
Query: 151 TPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILG-SRNIGSIGEGN 209
TPGRL+D L++ L + +++ DEADR++++GF ++++IL+ + S E
Sbjct: 525 TPGRLIDVLENRYLVL-SRCTYVVLDEADRMIDMGFEPDVQKILEHMPVSNQKPDTDEAE 583
Query: 210 E----VSNVK------RQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLPEDKSHVR- 258
+ ++N + RQ ++ +AT+ V LA+ L P ++ + P ++ +
Sbjct: 584 DPEKMLANFESGKHKYRQTVMFTATMPPAVERLARSYLRRPAVVYIGSAGKPHERVEQKV 643
Query: 259 FGSLESDVKEEV 270
F ES+ ++++
Sbjct: 644 FLMSESEKRKKL 655
Score = 166 (63.5 bits), Expect = 1.7e-35, Sum P(2) = 1.7e-35
Identities = 32/88 (36%), Positives = 48/88 (54%)
Query: 366 LHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRVG 425
LHG QE R K K +L++TDVA RG+D V ++ YD A +Y+HR+G
Sbjct: 694 LHGGKGQEQREFALSNLKAGAKDILVATDVAGRGIDIQDVSMVVNYDMAKNIEDYIHRIG 753
Query: 426 RTARLGERGDSLLFLQPVEMDYLQDLEK 453
RT R G+ G ++ FL + +L++
Sbjct: 754 RTGRAGKSGVAITFLTKEDSAVFYELKQ 781
Score = 37 (18.1 bits), Expect = 9.8e-08, Sum P(2) = 9.8e-08
Identities = 7/12 (58%), Positives = 10/12 (83%)
Query: 132 ENRSKEKARLRK 143
E + +E+ARLRK
Sbjct: 331 EEKEQEEARLRK 342
>UNIPROTKB|Q9BUQ8 [details] [associations]
symbol:DDX23 "Probable ATP-dependent RNA helicase DDX23"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0000375
"RNA splicing, via transesterification reactions" evidence=TAS]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IC;TAS]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=TAS] [GO:0000354
"cis assembly of pre-catalytic spliceosome" evidence=IC]
[GO:0005682 "U5 snRNP" evidence=IDA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IDA] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0005886 "plasma membrane" evidence=IDA]
Reactome:REACT_71 InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 EMBL:AF026402 GO:GO:0005739
GO:GO:0005886 GO:GO:0005524 GO:GO:0005654 Reactome:REACT_1675
GO:GO:0005682 GO:GO:0003676 EMBL:CH471111 GO:GO:0071013
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0000354
KO:K12858 EMBL:AK312379 EMBL:BC002366 IPI:IPI00006725
RefSeq:NP_004809.2 UniGene:Hs.130098 ProteinModelPortal:Q9BUQ8
SMR:Q9BUQ8 DIP:DIP-34974N IntAct:Q9BUQ8 MINT:MINT-1572793
STRING:Q9BUQ8 PhosphoSite:Q9BUQ8 DMDM:160385708 PaxDb:Q9BUQ8
PRIDE:Q9BUQ8 DNASU:9416 Ensembl:ENST00000308025 GeneID:9416
KEGG:hsa:9416 UCSC:uc001rsm.3 CTD:9416 GeneCards:GC12M049223
HGNC:HGNC:17347 HPA:HPA038680 MIM:612172 neXtProt:NX_Q9BUQ8
PharmGKB:PA134934941 HOGENOM:HOG000268796 HOVERGEN:HBG102054
InParanoid:Q9BUQ8 OMA:PIRNWKE OrthoDB:EOG46T312 PhylomeDB:Q9BUQ8
GenomeRNAi:9416 NextBio:35278 ArrayExpress:Q9BUQ8 Bgee:Q9BUQ8
CleanEx:HS_DDX23 Genevestigator:Q9BUQ8 GermOnline:ENSG00000174243
Uniprot:Q9BUQ8
Length = 820
Score = 293 (108.2 bits), Expect = 1.7e-35, Sum P(2) = 1.7e-35
Identities = 78/252 (30%), Positives = 139/252 (55%)
Query: 35 ERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDR---- 90
++ G++ PT +Q QAIP+ L R ++ A TG+GKT A+L P++ + + P+IDR
Sbjct: 407 DKCGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLVWITTL-PKIDRIEES 465
Query: 91 SSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVA 150
G +A++L PTREL Q+ E K I V+GG +R + RLR G I++A
Sbjct: 466 DQGPYAIILAPTRELAQQIEEETIKFGKPLG-IRTVAVIGGISREDQGFRLRMGCEIVIA 524
Query: 151 TPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILG-SRNIGSIGEGN 209
TPGRL+D L++ L + +++ DEADR++++GF ++++IL+ + S E
Sbjct: 525 TPGRLIDVLENRYLVL-SRCTYVVLDEADRMIDMGFEPDVQKILEHMPVSNQKPDTDEAE 583
Query: 210 E----VSNVK------RQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLPEDKSHVR- 258
+ ++N + RQ ++ +AT+ V LA+ L P ++ + P ++ +
Sbjct: 584 DPEKMLANFESGKHKYRQTVMFTATMPPAVERLARSYLRRPAVVYIGSAGKPHERVEQKV 643
Query: 259 FGSLESDVKEEV 270
F ES+ ++++
Sbjct: 644 FLMSESEKRKKL 655
Score = 166 (63.5 bits), Expect = 1.7e-35, Sum P(2) = 1.7e-35
Identities = 32/88 (36%), Positives = 48/88 (54%)
Query: 366 LHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRVG 425
LHG QE R K K +L++TDVA RG+D V ++ YD A +Y+HR+G
Sbjct: 694 LHGGKGQEQREFALSNLKAGAKDILVATDVAGRGIDIQDVSMVVNYDMAKNIEDYIHRIG 753
Query: 426 RTARLGERGDSLLFLQPVEMDYLQDLEK 453
RT R G+ G ++ FL + +L++
Sbjct: 754 RTGRAGKSGVAITFLTKEDSAVFYELKQ 781
Score = 37 (18.1 bits), Expect = 9.8e-08, Sum P(2) = 9.8e-08
Identities = 7/12 (58%), Positives = 10/12 (83%)
Query: 132 ENRSKEKARLRK 143
E + +E+ARLRK
Sbjct: 331 EEKEQEEARLRK 342
>RGD|1311758 [details] [associations]
symbol:Ddx41 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 41"
species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA;ISO] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005783 "endoplasmic
reticulum" evidence=IEA;ISO] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0035458 "cellular response to interferon-beta"
evidence=IEA;ISO] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IEA;ISO] [GO:0051607
"defense response to virus" evidence=IEA;ISO] [GO:0071013
"catalytic step 2 spliceosome" evidence=IEA;ISO] [GO:0005730
"nucleolus" evidence=ISO] InterPro:IPR001650 InterPro:IPR001878
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00343 SMART:SM00490 RGD:1311758 GO:GO:0005783 GO:GO:0005524
GO:GO:0003677 GO:GO:0008270 GO:GO:0045944 GO:GO:0051607
GO:GO:0035458 GO:GO:0071013 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 EMBL:CH474032 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00620000087942
HOVERGEN:HBG015893 KO:K13116 CTD:51428 HOGENOM:HOG000268792
OrthoDB:EOG4CVG6K EMBL:BC166825 IPI:IPI00565869
RefSeq:NP_001101516.1 UniGene:Rn.114971 SMR:B2RYL8
Ensembl:ENSRNOT00000018114 GeneID:314336 KEGG:rno:314336
UCSC:RGD:1311758 NextBio:667511 Genevestigator:B2RYL8
Uniprot:B2RYL8
Length = 622
Score = 268 (99.4 bits), Expect = 2.3e-35, Sum P(2) = 2.3e-35
Identities = 77/234 (32%), Positives = 124/234 (52%)
Query: 19 SFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPII 78
SF + L + + L+++ G PT +Q Q IP ILSGR ++ A TG+GKT+ + P+I
Sbjct: 182 SFKEMKLPAAILRGLKKK-GILHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVI 240
Query: 79 NHLQSYSPRI--DRSSGTFALVLVPTRELCLQVYEILH---KLLHRFH--WIVPGYVMGG 131
R+ + G + L++ P+REL Q + IL +LL + +GG
Sbjct: 241 MFCLEQEKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIGG 300
Query: 132 ENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIE 191
+ ++ +R G+ ++VATPGRL+D L+ L R++ DEADR++++GF +I
Sbjct: 301 MSVKEQMETIRHGVHMMVATPGRLMDLLQKKMVSLDI-CRYLALDEADRMIDMGFEGDI- 358
Query: 192 EILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGL 245
R I S +G +RQ LL SAT+ +K+ + AK +L PV I +
Sbjct: 359 --------RTIFSYFKG------QRQTLLFSATMPKKIQNFAKSALVKPVTINV 398
Score = 188 (71.2 bits), Expect = 2.3e-35, Sum P(2) = 2.3e-35
Identities = 58/198 (29%), Positives = 95/198 (47%)
Query: 274 STTMRSTTEDFKLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVD 333
S TM ++F A LV+ V + G A L +++ + + K+V
Sbjct: 375 SATMPKKIQNFAKSA-LVKP-VTINVGRAGAASLDVIQEVEYVKEEAKMVYLLECLQKTP 432
Query: 334 FHYSLLSEFQWSPHSQPDMELKQLFLR-CKTFRLHGNMKQEDRRTTFGAFKTEKKALLLS 392
+ +E + + D + L L+ + +HG QE+R AF+ KK +L++
Sbjct: 433 PPVLIFAEKK----ADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGKKDVLVA 488
Query: 393 TDVAARGLDFPKVKCIIQYDSAGEATEYVHRVGRTARLGERGDSLLFLQPV-EMDYLQDL 451
TDVA++GLDFP ++ +I YD E YVHR+GRT R G G + F+ + L DL
Sbjct: 489 TDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFINKACDESVLMDL 548
Query: 452 EKHGVSLTEY--PLLKVL 467
+ + + P+L+VL
Sbjct: 549 KALLLEAKQKVPPVLQVL 566
Score = 41 (19.5 bits), Expect = 6.5e-11, Sum P(2) = 6.5e-11
Identities = 12/32 (37%), Positives = 14/32 (43%)
Query: 122 WIVPGYVMGGENRSKEKARLRKGISILVATPG 153
W P YV+ E R+RK ILV G
Sbjct: 146 WTPPRYVLSMSEERHE--RVRKKYHILVEGDG 175
>CGD|CAL0005725 [details] [associations]
symbol:PRP5 species:5476 "Candida albicans" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] [GO:0008186 "RNA-dependent ATPase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 CGD:CAL0005725 GO:GO:0005524
GO:GO:0005634 GO:GO:0008380 GO:GO:0006397 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 EMBL:AACQ01000029
EMBL:AACQ01000028 KO:K12811 RefSeq:XP_719806.1 RefSeq:XP_719923.1
ProteinModelPortal:Q5ADL0 GeneID:3638447 GeneID:3638635
KEGG:cal:CaO19.14123 KEGG:cal:CaO19.6831 Uniprot:Q5ADL0
Length = 884
Score = 310 (114.2 bits), Expect = 2.7e-35, Sum P(2) = 2.7e-35
Identities = 85/243 (34%), Positives = 130/243 (53%)
Query: 20 FSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIIN 79
+S L L + L + ++L FE P+ +Q+QA+P ILSGR V+ A TG+GKT++Y+ P++
Sbjct: 295 WSHLALPTNLSSVIHDKLKFEKPSAIQSQALPTILSGRDVIGIAKTGSGKTLSYVLPMLR 354
Query: 80 HLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKA 139
H+Q D + G L+L PTREL LQ+ + + R + + GG + +
Sbjct: 355 HIQDQQFSKD-NQGPIGLILSPTRELALQIEKEILNFTKRNNNLRVCCCYGGSSIENQIN 413
Query: 140 RLRKGISILVATPGRLLDHLKHTSSFLHTNLR---WIIFDEADRILELGFGKEIEEILDI 196
L+KG+ I+V TPGR++D L S + NL+ +++ DEADR+ +LGF ++ +IL
Sbjct: 414 ELKKGVEIIVGTPGRVIDLLAANSGRV-LNLKRCTFVVLDEADRMFDLGFEPQVNKILTQ 472
Query: 197 LGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLI--GLDEKKLPEDK 254
+ RQ +L SAT K+ LAK L PV+I G PE K
Sbjct: 473 I---------------RPDRQTVLFSATFPRKMETLAKQILTDPVVIIVGGISVVAPEIK 517
Query: 255 SHV 257
V
Sbjct: 518 QEV 520
Score = 146 (56.5 bits), Expect = 2.7e-35, Sum P(2) = 2.7e-35
Identities = 31/85 (36%), Positives = 48/85 (56%)
Query: 366 LHGNMKQEDRRTTFGAFKTEKKAL--LLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHR 423
+HG Q DR+ F + + L++T +AARGLD + +I +D +YVHR
Sbjct: 584 IHGGKDQMDRKYAIKEFASMDSGINILIATSIAARGLDVRNLGLVINFDPPNHMEDYVHR 643
Query: 424 VGRTARLGERGDSLLFL---QPVEM 445
VGRT R G +G+++ F+ QP E+
Sbjct: 644 VGRTGRAGAKGNAITFVSSSQPKEV 668
Score = 52 (23.4 bits), Expect = 5.1e-07, Sum P(2) = 5.1e-07
Identities = 29/108 (26%), Positives = 49/108 (45%)
Query: 216 RQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLPEDKSHVRFGSLESDV---KEEVEH 272
R+ LSA +E+V L + L+ + G D + SH+ + S V K + E
Sbjct: 258 REAYELSALSDEQVE-LIRQDLDNIKVKGTDVPRPILKWSHLALPTNLSSVIHDKLKFEK 316
Query: 273 PSTTMRSTTEDFKLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQ 320
PS ++S L + V K G L+ +L +L+H+ D + S+
Sbjct: 317 PSA-IQSQALPTILSGRDVIGIAKTGSGKTLSYVLPMLRHIQDQQFSK 363
>UNIPROTKB|Q5ADL0 [details] [associations]
symbol:PRP5 "Pre-mRNA-processing ATP-dependent RNA helicase
PRP5" species:237561 "Candida albicans SC5314" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 CGD:CAL0005725 GO:GO:0005524
GO:GO:0005634 GO:GO:0008380 GO:GO:0006397 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 EMBL:AACQ01000029
EMBL:AACQ01000028 KO:K12811 RefSeq:XP_719806.1 RefSeq:XP_719923.1
ProteinModelPortal:Q5ADL0 GeneID:3638447 GeneID:3638635
KEGG:cal:CaO19.14123 KEGG:cal:CaO19.6831 Uniprot:Q5ADL0
Length = 884
Score = 310 (114.2 bits), Expect = 2.7e-35, Sum P(2) = 2.7e-35
Identities = 85/243 (34%), Positives = 130/243 (53%)
Query: 20 FSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIIN 79
+S L L + L + ++L FE P+ +Q+QA+P ILSGR V+ A TG+GKT++Y+ P++
Sbjct: 295 WSHLALPTNLSSVIHDKLKFEKPSAIQSQALPTILSGRDVIGIAKTGSGKTLSYVLPMLR 354
Query: 80 HLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKA 139
H+Q D + G L+L PTREL LQ+ + + R + + GG + +
Sbjct: 355 HIQDQQFSKD-NQGPIGLILSPTRELALQIEKEILNFTKRNNNLRVCCCYGGSSIENQIN 413
Query: 140 RLRKGISILVATPGRLLDHLKHTSSFLHTNLR---WIIFDEADRILELGFGKEIEEILDI 196
L+KG+ I+V TPGR++D L S + NL+ +++ DEADR+ +LGF ++ +IL
Sbjct: 414 ELKKGVEIIVGTPGRVIDLLAANSGRV-LNLKRCTFVVLDEADRMFDLGFEPQVNKILTQ 472
Query: 197 LGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLI--GLDEKKLPEDK 254
+ RQ +L SAT K+ LAK L PV+I G PE K
Sbjct: 473 I---------------RPDRQTVLFSATFPRKMETLAKQILTDPVVIIVGGISVVAPEIK 517
Query: 255 SHV 257
V
Sbjct: 518 QEV 520
Score = 146 (56.5 bits), Expect = 2.7e-35, Sum P(2) = 2.7e-35
Identities = 31/85 (36%), Positives = 48/85 (56%)
Query: 366 LHGNMKQEDRRTTFGAFKTEKKAL--LLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHR 423
+HG Q DR+ F + + L++T +AARGLD + +I +D +YVHR
Sbjct: 584 IHGGKDQMDRKYAIKEFASMDSGINILIATSIAARGLDVRNLGLVINFDPPNHMEDYVHR 643
Query: 424 VGRTARLGERGDSLLFL---QPVEM 445
VGRT R G +G+++ F+ QP E+
Sbjct: 644 VGRTGRAGAKGNAITFVSSSQPKEV 668
Score = 52 (23.4 bits), Expect = 5.1e-07, Sum P(2) = 5.1e-07
Identities = 29/108 (26%), Positives = 49/108 (45%)
Query: 216 RQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLPEDKSHVRFGSLESDV---KEEVEH 272
R+ LSA +E+V L + L+ + G D + SH+ + S V K + E
Sbjct: 258 REAYELSALSDEQVE-LIRQDLDNIKVKGTDVPRPILKWSHLALPTNLSSVIHDKLKFEK 316
Query: 273 PSTTMRSTTEDFKLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQ 320
PS ++S L + V K G L+ +L +L+H+ D + S+
Sbjct: 317 PSA-IQSQALPTILSGRDVIGIAKTGSGKTLSYVLPMLRHIQDQQFSK 363
>UNIPROTKB|E1BII7 [details] [associations]
symbol:DDX43 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005622 "intracellular" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR011545 Pfam:PF00013 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS50084 PROSITE:PS51194
SMART:SM00322 SMART:SM00490 GO:GO:0005524 GO:GO:0003723
GO:GO:0005622 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 EMBL:DAAA02025231 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 EMBL:DAAA02025227 EMBL:DAAA02025228
EMBL:DAAA02025229 EMBL:DAAA02025230 IPI:IPI00712097
Ensembl:ENSBTAT00000029077 OMA:ANQNIPE Uniprot:E1BII7
Length = 647
Score = 267 (99.0 bits), Expect = 2.8e-35, Sum P(2) = 2.8e-35
Identities = 66/168 (39%), Positives = 101/168 (60%)
Query: 35 ERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRS-SG 93
E+ GF+ PT +Q+QA P+IL G ++ A TGTGKT++YL P H+ S P + R+ +G
Sbjct: 257 EKAGFQKPTPIQSQAWPIILQGIDLIGVAQTGTGKTLSYLMPGFIHIDS-QPVLQRARNG 315
Query: 94 TFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPG 153
LVL PTREL LQV + +R + + GG +R + L KG I++ATPG
Sbjct: 316 PGMLVLTPTRELALQVDAECSEYSYR--GLKSVCIYGGGDRDGQIKDLSKGADIIIATPG 373
Query: 154 RLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEIL-DILGSR 200
RL D + +L + + +++ DEAD++L++GF +I +IL D+ R
Sbjct: 374 RLHDLQMNNFVYLKS-ITYLVLDEADKMLDMGFEPQIMKILLDVRPDR 420
Score = 189 (71.6 bits), Expect = 2.8e-35, Sum P(2) = 2.8e-35
Identities = 53/174 (30%), Positives = 85/174 (48%)
Query: 275 TTMRSTTEDFKLPAQLVQRYVKVPC----GSR-LAVLLSILKHLFDTEVSQK---LVVFF 326
T M S T + + +L Q Y+K P G+ L + ++ +++ T +K + F
Sbjct: 422 TVMTSATWPYAV-RRLAQSYLKEPMIVYVGTLDLVAVSTVTQNIIVTTEDEKRSHIQAFI 480
Query: 327 STCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEK 386
+ D +S + H D+ ++++ + LHGN +Q DR +FKT K
Sbjct: 481 DSMSPKDKVIIFVSRKAVADHLSSDLGIRRISVES----LHGNREQSDRERALKSFKTGK 536
Query: 387 KALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRVGRTARLGERGDSLLFL 440
+L++TD+A+RGLD V + YD EYVHRVGRT R G G S+ +
Sbjct: 537 VRILIATDLASRGLDVHDVTHVYNYDFPRNIEEYVHRVGRTGRAGRTGVSITLI 590
Score = 122 (48.0 bits), Expect = 0.00043, P = 0.00043
Identities = 37/116 (31%), Positives = 62/116 (53%)
Query: 128 VMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFG 187
+ GG +R + L KG I++ATPGRL D + +L + + +++ DEAD++L++GF
Sbjct: 348 IYGGGDRDGQIKDLSKGADIIIATPGRLHDLQMNNFVYLKS-ITYLVLDEADKMLDMGFE 406
Query: 188 KEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLI 243
+I +IL L R RQ ++ SAT V LA+ L+ P+++
Sbjct: 407 PQIMKIL--LDVRP-------------DRQTVMTSATWPYAVRRLAQSYLKEPMIV 447
>UNIPROTKB|Q2KEF1 [details] [associations]
symbol:MGCH7_ch7g1085 "Putative uncharacterized protein"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:CM000230
GO:GO:0008026 ProteinModelPortal:Q2KEF1 Uniprot:Q2KEF1
Length = 568
Score = 289 (106.8 bits), Expect = 3.0e-35, Sum P(2) = 3.0e-35
Identities = 80/224 (35%), Positives = 122/224 (54%)
Query: 15 FASCSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGR-HVLVNAATGTGKTVAY 73
FA + +L L L D + + L F+ + VQA I +++ R VL A TGTGKT+A+
Sbjct: 74 FADLASENL-LDPVLLDTITQDLKFDRMSPVQAATIRHLIADRGDVLAQAKTGTGKTIAF 132
Query: 74 LAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGEN 133
L P + L P R + LV+ PTREL LQ+ + LL R +GG N
Sbjct: 133 LLPALQTLLR-RPS-SRGNDVSVLVISPTRELALQIAKEAEALLQRLPQYKVCTAIGGTN 190
Query: 134 RSKEKARLRKGISILVATPGRLLDHLKHTS-SFLHTNLRWIIFDEADRILELGFGKEIEE 192
+ E+ R+ +G IL+ TPGRL+DHL+ S + + ++ + DEADR+L++GF ++++
Sbjct: 191 KDAEQRRILRGCQILIGTPGRLMDHLEEQSVAEMLQSVDTFVLDEADRLLDMGFMPQLKK 250
Query: 193 ILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKIS 236
I+ L +R V RQ +L SAT+ E H+AK+S
Sbjct: 251 IVAALPNRQ-----------KVPRQGMLFSATVAE---HVAKVS 280
Score = 161 (61.7 bits), Expect = 3.0e-35, Sum P(2) = 3.0e-35
Identities = 47/157 (29%), Positives = 70/157 (44%)
Query: 292 QRYVKVPCGS-RLAVLLSILKHLFDTEVSQ---KLVVFFSTCDAVDFHYSLLSEFQWSPH 347
Q ++VP S +A L+ L+H +Q K +VF T VDF+ ++L
Sbjct: 307 QHLIEVPNFSDTMAALVGALRHELAESANQDEFKAIVFAPTAALVDFYAAVLEGL----- 361
Query: 348 SQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKC 407
P+M + LH M Q R ++ +L++TDV ARG+DFP V
Sbjct: 362 --PNMP--------RILTLHSRMTQSKRTRVTEDYRKSNATVLVATDVVARGMDFPSVTN 411
Query: 408 IIQYDSAGEATEYVHRVGRTARLGERGDSLLFLQPVE 444
+ Q + Y+HR+GRTAR G G + E
Sbjct: 412 VFQVGLPMDKESYIHRLGRTARAGAEGRGTFIVSAAE 448
>UNIPROTKB|A3KN07 [details] [associations]
symbol:DDX41 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0051607 "defense response to virus" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0035458 "cellular response to
interferon-beta" evidence=IEA] [GO:0005783 "endoplasmic reticulum"
evidence=IEA] InterPro:IPR001650 InterPro:IPR001878
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00343 SMART:SM00490 GO:GO:0005783 GO:GO:0005524
GO:GO:0003677 GO:GO:0008270 GO:GO:0045944 GO:GO:0051607
GO:GO:0035458 GO:GO:0071013 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00620000087942 HOVERGEN:HBG015893
KO:K13116 OMA:KDQEERS CTD:51428 HOGENOM:HOG000268792
OrthoDB:EOG4CVG6K EMBL:DAAA02020056 EMBL:BC133465 IPI:IPI00840518
RefSeq:NP_001076071.1 UniGene:Bt.5258 SMR:A3KN07
Ensembl:ENSBTAT00000043510 GeneID:505276 KEGG:bta:505276
InParanoid:A3KN07 NextBio:20867058 Uniprot:A3KN07
Length = 622
Score = 267 (99.0 bits), Expect = 3.0e-35, Sum P(2) = 3.0e-35
Identities = 76/234 (32%), Positives = 123/234 (52%)
Query: 19 SFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPII 78
SF + + + L+++ G PT +Q Q IP ILSGR ++ A TG+GKT+ + P+I
Sbjct: 182 SFKEMKFPAAILRGLKKK-GIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVI 240
Query: 79 NHLQSYSPRI--DRSSGTFALVLVPTRELCLQVYEILH---KLLHRFH--WIVPGYVMGG 131
R+ + G + L++ P+REL Q + IL +LL + +GG
Sbjct: 241 MFCLEQEKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIGG 300
Query: 132 ENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIE 191
+ ++ +R G+ ++VATPGRL+D L+ L R++ DEADR++++GF +I
Sbjct: 301 MSVKEQMETIRHGVHMMVATPGRLMDLLQKKMVSLDI-CRYLALDEADRMIDMGFEGDI- 358
Query: 192 EILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGL 245
R I S +G +RQ LL SAT+ +K+ + AK +L PV I +
Sbjct: 359 --------RTIFSYFKG------QRQTLLFSATMPKKIQNFAKSALVKPVTINV 398
Score = 188 (71.2 bits), Expect = 3.0e-35, Sum P(2) = 3.0e-35
Identities = 58/198 (29%), Positives = 95/198 (47%)
Query: 274 STTMRSTTEDFKLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVD 333
S TM ++F A LV+ V + G A L +++ + + K+V
Sbjct: 375 SATMPKKIQNFAKSA-LVKP-VTINVGRAGAASLDVIQEVEYVKEEAKMVYLLECLQKTP 432
Query: 334 FHYSLLSEFQWSPHSQPDMELKQLFLR-CKTFRLHGNMKQEDRRTTFGAFKTEKKALLLS 392
+ +E + + D + L L+ + +HG QE+R AF+ KK +L++
Sbjct: 433 PPVLIFAEKK----ADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGKKDVLVA 488
Query: 393 TDVAARGLDFPKVKCIIQYDSAGEATEYVHRVGRTARLGERGDSLLFLQPV-EMDYLQDL 451
TDVA++GLDFP ++ +I YD E YVHR+GRT R G G + F+ + L DL
Sbjct: 489 TDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFINKACDESVLMDL 548
Query: 452 EKHGVSLTEY--PLLKVL 467
+ + + P+L+VL
Sbjct: 549 KALLLEAKQKVPPVLQVL 566
Score = 41 (19.5 bits), Expect = 6.5e-11, Sum P(2) = 6.5e-11
Identities = 12/32 (37%), Positives = 14/32 (43%)
Query: 122 WIVPGYVMGGENRSKEKARLRKGISILVATPG 153
W P YV+ E R+RK ILV G
Sbjct: 146 WTPPRYVLSMSEERHE--RVRKKYHILVEGDG 175
>UNIPROTKB|E2R052 [details] [associations]
symbol:DDX41 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0051607 "defense response to virus" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0035458 "cellular
response to interferon-beta" evidence=IEA] [GO:0005783 "endoplasmic
reticulum" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] InterPro:IPR001650 InterPro:IPR001878
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00343 SMART:SM00490 GO:GO:0005783 GO:GO:0005524
GO:GO:0003677 GO:GO:0008270 GO:GO:0045944 GO:GO:0051607
GO:GO:0035458 GO:GO:0071013 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 KO:K13116 CTD:51428 EMBL:AAEX03002959
RefSeq:XP_536417.2 ProteinModelPortal:E2R052
Ensembl:ENSCAFT00000025858 GeneID:479274 KEGG:cfa:479274
NextBio:20854482 Uniprot:E2R052
Length = 622
Score = 267 (99.0 bits), Expect = 3.0e-35, Sum P(2) = 3.0e-35
Identities = 76/234 (32%), Positives = 123/234 (52%)
Query: 19 SFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPII 78
SF + + + L+++ G PT +Q Q IP ILSGR ++ A TG+GKT+ + P+I
Sbjct: 182 SFKEMKFPAAILRGLKKK-GIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVI 240
Query: 79 NHLQSYSPRI--DRSSGTFALVLVPTRELCLQVYEILH---KLLHRFH--WIVPGYVMGG 131
R+ + G + L++ P+REL Q + IL +LL + +GG
Sbjct: 241 MFCLEQEKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIGG 300
Query: 132 ENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIE 191
+ ++ +R G+ ++VATPGRL+D L+ L R++ DEADR++++GF +I
Sbjct: 301 MSVKEQMETIRHGVHMMVATPGRLMDLLQKKMVSLDI-CRYLALDEADRMIDMGFEGDI- 358
Query: 192 EILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGL 245
R I S +G +RQ LL SAT+ +K+ + AK +L PV I +
Sbjct: 359 --------RTIFSYFKG------QRQTLLFSATMPKKIQNFAKSALVKPVTINV 398
Score = 188 (71.2 bits), Expect = 3.0e-35, Sum P(2) = 3.0e-35
Identities = 58/198 (29%), Positives = 95/198 (47%)
Query: 274 STTMRSTTEDFKLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVD 333
S TM ++F A LV+ V + G A L +++ + + K+V
Sbjct: 375 SATMPKKIQNFAKSA-LVKP-VTINVGRAGAASLDVIQEVEYVKEEAKMVYLLECLQKTP 432
Query: 334 FHYSLLSEFQWSPHSQPDMELKQLFLR-CKTFRLHGNMKQEDRRTTFGAFKTEKKALLLS 392
+ +E + + D + L L+ + +HG QE+R AF+ KK +L++
Sbjct: 433 PPVLIFAEKK----ADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGKKDVLVA 488
Query: 393 TDVAARGLDFPKVKCIIQYDSAGEATEYVHRVGRTARLGERGDSLLFLQPV-EMDYLQDL 451
TDVA++GLDFP ++ +I YD E YVHR+GRT R G G + F+ + L DL
Sbjct: 489 TDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFINKACDESVLMDL 548
Query: 452 EKHGVSLTEY--PLLKVL 467
+ + + P+L+VL
Sbjct: 549 KALLLEAKQKVPPVLQVL 566
Score = 41 (19.5 bits), Expect = 6.5e-11, Sum P(2) = 6.5e-11
Identities = 12/32 (37%), Positives = 14/32 (43%)
Query: 122 WIVPGYVMGGENRSKEKARLRKGISILVATPG 153
W P YV+ E R+RK ILV G
Sbjct: 146 WTPPRYVLSMSEERHE--RVRKKYHILVEGDG 175
>UNIPROTKB|Q9UJV9 [details] [associations]
symbol:DDX41 "Probable ATP-dependent RNA helicase DDX41"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005783 "endoplasmic reticulum" evidence=IEA] [GO:0035458
"cellular response to interferon-beta" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0051607 "defense response to virus"
evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0007275 "multicellular organismal development"
evidence=TAS] [GO:0006396 "RNA processing" evidence=TAS]
[GO:0006915 "apoptotic process" evidence=TAS] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR001650 InterPro:IPR001878 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS50158
PROSITE:PS51194 SMART:SM00343 SMART:SM00490 GO:GO:0005783
GO:GO:0007275 GO:GO:0005524 GO:GO:0006915 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0045944 GO:GO:0051607
GO:GO:0003723 GO:GO:0035458 GO:GO:0000398 GO:GO:0071013
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:CH471195
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOVERGEN:HBG015893 KO:K13116 EMBL:AF195417 EMBL:AK001255
EMBL:AK027768 EMBL:AK315491 EMBL:BC015476 EMBL:AL137455
EMBL:BX641072 IPI:IPI00007208 PIR:T46269 RefSeq:NP_057306.2
UniGene:Hs.484288 PDB:2P6N PDBsum:2P6N ProteinModelPortal:Q9UJV9
SMR:Q9UJV9 IntAct:Q9UJV9 MINT:MINT-3081244 STRING:Q9UJV9
PhosphoSite:Q9UJV9 DMDM:20532370 PaxDb:Q9UJV9 PeptideAtlas:Q9UJV9
PRIDE:Q9UJV9 DNASU:51428 Ensembl:ENST00000507955 GeneID:51428
KEGG:hsa:51428 UCSC:uc003mhn.3 CTD:51428 GeneCards:GC05M176938
HGNC:HGNC:18674 HPA:HPA017911 MIM:608170 neXtProt:NX_Q9UJV9
PharmGKB:PA134908862 HOGENOM:HOG000268792 InParanoid:Q9UJV9
OrthoDB:EOG4CVG6K PhylomeDB:Q9UJV9 ChiTaRS:DDX41
EvolutionaryTrace:Q9UJV9 GenomeRNAi:51428 NextBio:54987
ArrayExpress:Q9UJV9 Bgee:Q9UJV9 CleanEx:HS_DDX41
Genevestigator:Q9UJV9 GermOnline:ENSG00000183258 Uniprot:Q9UJV9
Length = 622
Score = 267 (99.0 bits), Expect = 3.0e-35, Sum P(2) = 3.0e-35
Identities = 76/234 (32%), Positives = 123/234 (52%)
Query: 19 SFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPII 78
SF + + + L+++ G PT +Q Q IP ILSGR ++ A TG+GKT+ + P+I
Sbjct: 182 SFKEMKFPAAILRGLKKK-GIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVI 240
Query: 79 NHLQSYSPRI--DRSSGTFALVLVPTRELCLQVYEILH---KLLHRFH--WIVPGYVMGG 131
R+ + G + L++ P+REL Q + IL +LL + +GG
Sbjct: 241 MFCLEQEKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIGG 300
Query: 132 ENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIE 191
+ ++ +R G+ ++VATPGRL+D L+ L R++ DEADR++++GF +I
Sbjct: 301 MSVKEQMETIRHGVHMMVATPGRLMDLLQKKMVSLDI-CRYLALDEADRMIDMGFEGDI- 358
Query: 192 EILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGL 245
R I S +G +RQ LL SAT+ +K+ + AK +L PV I +
Sbjct: 359 --------RTIFSYFKG------QRQTLLFSATMPKKIQNFAKSALVKPVTINV 398
Score = 188 (71.2 bits), Expect = 3.0e-35, Sum P(2) = 3.0e-35
Identities = 58/198 (29%), Positives = 95/198 (47%)
Query: 274 STTMRSTTEDFKLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVD 333
S TM ++F A LV+ V + G A L +++ + + K+V
Sbjct: 375 SATMPKKIQNFAKSA-LVKP-VTINVGRAGAASLDVIQEVEYVKEEAKMVYLLECLQKTP 432
Query: 334 FHYSLLSEFQWSPHSQPDMELKQLFLR-CKTFRLHGNMKQEDRRTTFGAFKTEKKALLLS 392
+ +E + + D + L L+ + +HG QE+R AF+ KK +L++
Sbjct: 433 PPVLIFAEKK----ADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGKKDVLVA 488
Query: 393 TDVAARGLDFPKVKCIIQYDSAGEATEYVHRVGRTARLGERGDSLLFLQPV-EMDYLQDL 451
TDVA++GLDFP ++ +I YD E YVHR+GRT R G G + F+ + L DL
Sbjct: 489 TDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFINKACDESVLMDL 548
Query: 452 EKHGVSLTEY--PLLKVL 467
+ + + P+L+VL
Sbjct: 549 KALLLEAKQKVPPVLQVL 566
Score = 41 (19.5 bits), Expect = 6.5e-11, Sum P(2) = 6.5e-11
Identities = 12/32 (37%), Positives = 14/32 (43%)
Query: 122 WIVPGYVMGGENRSKEKARLRKGISILVATPG 153
W P YV+ E R+RK ILV G
Sbjct: 146 WTPPRYVLSMSEERHE--RVRKKYHILVEGDG 175
>UNIPROTKB|F1NTK9 [details] [associations]
symbol:DDX54 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003714 "transcription corepressor
activity" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0030331 "estrogen
receptor binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012541
Pfam:PF00270 Pfam:PF00271 Pfam:PF08147 ProDom:PD024971
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003714 GO:GO:0005730 GO:GO:0003723 GO:GO:0006396
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00550000075100
EMBL:AADN02043183 IPI:IPI00582285 ProteinModelPortal:F1NTK9
Ensembl:ENSGALT00000012108 Uniprot:F1NTK9
Length = 822
Score = 301 (111.0 bits), Expect = 3.1e-35, Sum P(3) = 3.1e-35
Identities = 68/178 (38%), Positives = 107/178 (60%)
Query: 17 SCSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAP 76
S F S+GL + + ++ G++ PT +Q + IPVIL GR V+ A TG+GKT +L P
Sbjct: 35 SGGFQSMGLSYPVFKGVMKK-GYKVPTPIQRKTIPVILRGRDVVAMARTGSGKTACFLLP 93
Query: 77 IINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSK 136
+ L++ SP SG AL+L PTREL LQ + K L +F + V+GG+
Sbjct: 94 MFERLKAPSP-----SGARALILSPTRELALQTLKFT-KELGKFTGLKTALVLGGDKMED 147
Query: 137 EKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEIL 194
+ A L + I++ATPGRL+ H+ + ++ +++FDEADR+ E+GF ++++EIL
Sbjct: 148 QFAALHENPDIIIATPGRLV-HVAVEMNLKLQSVEYVVFDEADRLFEMGFAEQLQEIL 204
Score = 171 (65.3 bits), Expect = 4.5e-20, Sum P(3) = 4.5e-20
Identities = 52/157 (33%), Positives = 82/157 (52%)
Query: 115 KLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWII 174
K L +F + V+GG+ + A L + I++ATPGRL+ H+ + ++ +++
Sbjct: 126 KELGKFTGLKTALVLGGDKMEDQFAALHENPDIIIATPGRLV-HVAVEMNLKLQSVEYVV 184
Query: 175 FDEADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAK 234
FDEADR+ E+GF ++++EIL +R GS Q +L SATL + + A+
Sbjct: 185 FDEADRLFEMGFAEQLQEIL----ARLPGS-----------HQTVLFSATLPKLLVEFAR 229
Query: 235 ISLETPVLIGLD-EKKLPEDKSHVRFGSLESDVKEEV 270
L P+LI LD E KL E + F + D K V
Sbjct: 230 AGLTEPMLIRLDVESKLSEQLK-LAFFHVRGDDKPAV 265
Score = 157 (60.3 bits), Expect = 3.1e-35, Sum P(3) = 3.1e-35
Identities = 35/91 (38%), Positives = 50/91 (54%)
Query: 361 CKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEY 420
C T ++ ++ Q R+ F K +LL TDVAARGLD P + +I Y ++ +
Sbjct: 303 CCT-HIYSSLDQTARKINIAKFAHGKCQVLLVTDVAARGLDIPMLDNVINYSFPAKSKLF 361
Query: 421 VHRVGRTARLGERGDSLLFLQPVEMDYLQDL 451
+HRVGR AR G G + + P EM Y+ DL
Sbjct: 362 LHRVGRVARAGRSGTAYSLVAPDEMPYIFDL 392
Score = 37 (18.1 bits), Expect = 3.1e-35, Sum P(3) = 3.1e-35
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 459 TEYPLLKVLDSFPLYGQKPRVKKFLTT 485
TE LK++DS Y K + + +T
Sbjct: 494 TELERLKLVDSIKAYKSKATIFEINST 520
>UNIPROTKB|J3KNN5 [details] [associations]
symbol:DDX41 "Probable ATP-dependent RNA helicase DDX41"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR001878 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00343 SMART:SM00490 GO:GO:0005524
GO:GO:0008270 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
OMA:KDQEERS HGNC:HGNC:18674 ChiTaRS:DDX41 EMBL:AC145098
Ensembl:ENST00000330503 Uniprot:J3KNN5
Length = 640
Score = 267 (99.0 bits), Expect = 3.4e-35, Sum P(2) = 3.4e-35
Identities = 76/234 (32%), Positives = 123/234 (52%)
Query: 19 SFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPII 78
SF + + + L+++ G PT +Q Q IP ILSGR ++ A TG+GKT+ + P+I
Sbjct: 200 SFKEMKFPAAILRGLKKK-GIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVI 258
Query: 79 NHLQSYSPRI--DRSSGTFALVLVPTRELCLQVYEILH---KLLHRFH--WIVPGYVMGG 131
R+ + G + L++ P+REL Q + IL +LL + +GG
Sbjct: 259 MFCLEQEKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIGG 318
Query: 132 ENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIE 191
+ ++ +R G+ ++VATPGRL+D L+ L R++ DEADR++++GF +I
Sbjct: 319 MSVKEQMETIRHGVHMMVATPGRLMDLLQKKMVSLDI-CRYLALDEADRMIDMGFEGDI- 376
Query: 192 EILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGL 245
R I S +G +RQ LL SAT+ +K+ + AK +L PV I +
Sbjct: 377 --------RTIFSYFKG------QRQTLLFSATMPKKIQNFAKSALVKPVTINV 416
Score = 188 (71.2 bits), Expect = 3.4e-35, Sum P(2) = 3.4e-35
Identities = 58/198 (29%), Positives = 95/198 (47%)
Query: 274 STTMRSTTEDFKLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVD 333
S TM ++F A LV+ V + G A L +++ + + K+V
Sbjct: 393 SATMPKKIQNFAKSA-LVKP-VTINVGRAGAASLDVIQEVEYVKEEAKMVYLLECLQKTP 450
Query: 334 FHYSLLSEFQWSPHSQPDMELKQLFLR-CKTFRLHGNMKQEDRRTTFGAFKTEKKALLLS 392
+ +E + + D + L L+ + +HG QE+R AF+ KK +L++
Sbjct: 451 PPVLIFAEKK----ADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGKKDVLVA 506
Query: 393 TDVAARGLDFPKVKCIIQYDSAGEATEYVHRVGRTARLGERGDSLLFLQPV-EMDYLQDL 451
TDVA++GLDFP ++ +I YD E YVHR+GRT R G G + F+ + L DL
Sbjct: 507 TDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFINKACDESVLMDL 566
Query: 452 EKHGVSLTEY--PLLKVL 467
+ + + P+L+VL
Sbjct: 567 KALLLEAKQKVPPVLQVL 584
Score = 41 (19.5 bits), Expect = 7.1e-11, Sum P(2) = 7.1e-11
Identities = 12/32 (37%), Positives = 14/32 (43%)
Query: 122 WIVPGYVMGGENRSKEKARLRKGISILVATPG 153
W P YV+ E R+RK ILV G
Sbjct: 164 WTPPRYVLSMSEERHE--RVRKKYHILVEGDG 193
>UNIPROTKB|Q8EIE5 [details] [associations]
symbol:dbpA "ATP-dependent RNA helicase DbpA"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268809 KO:K05591
OMA:HIDPARF ProtClustDB:PRK11776 InterPro:IPR005580 Pfam:PF03880
HSSP:P10081 RefSeq:NP_716527.1 ProteinModelPortal:Q8EIE5
GeneID:1168744 KEGG:son:SO_0897 PATRIC:23521451 Uniprot:Q8EIE5
Length = 458
Score = 282 (104.3 bits), Expect = 3.4e-35, Sum P(2) = 3.4e-35
Identities = 78/225 (34%), Positives = 117/225 (52%)
Query: 19 SFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPII 78
+FS+L L + L + L +G+ T +QAQ++P IL+G V+ TG+GKT A+ ++
Sbjct: 2 AFSTLKLKTELLENLSS-MGYNEMTPIQAQSLPAILAGEDVIGQGKTGSGKTAAFGLGLL 60
Query: 79 NHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEK 138
N L RI LVL PTREL QV + + L H + + GG +
Sbjct: 61 NKLDVKRFRIQ------TLVLCPTRELADQVAQEIRTLARGIHNVKVLTLCGGVPMGPQI 114
Query: 139 ARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILG 198
L G I+V TPGR++DHL L +NL ++ DEADR+LE+GF +++ I+
Sbjct: 115 GSLEHGAHIIVGTPGRIVDHLDRNRLDL-SNLNMLVLDEADRMLEMGFQPQLDAII---- 169
Query: 199 SRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLI 243
E S +RQ LL SAT E++ +AK + PV++
Sbjct: 170 -----------EQSPRERQTLLFSATFPEQIQSIAKQIMYNPVMV 203
Score = 161 (61.7 bits), Expect = 3.4e-35, Sum P(2) = 3.4e-35
Identities = 38/121 (31%), Positives = 60/121 (49%)
Query: 366 LHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRVG 425
LHG+++Q DR T F + +L++TDVAARGLD + + Y A + ++HR+G
Sbjct: 270 LHGDLEQRDRDETLLQFANKSACVLVATDVAARGLDIDALDAVFNYHVAYDTEVHIHRIG 329
Query: 426 RTARLGERGDSLLFLQPVEMDYLQDLEKHGVSLTEYPLLKVLDSFPLYGQKPRVKKFLTT 485
RT R G +G + F + + LE++ L + L S L G P +T
Sbjct: 330 RTGRAGSKGAAYTFYNDQDGYKIALLEEY---LDREITSESLPSLSLLGSAPNAPTMITL 386
Query: 486 E 486
+
Sbjct: 387 Q 387
>TIGR_CMR|SO_0897 [details] [associations]
symbol:SO_0897 "ATP-dependent RNA helicase DbpA"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268809 KO:K05591
OMA:HIDPARF ProtClustDB:PRK11776 InterPro:IPR005580 Pfam:PF03880
HSSP:P10081 RefSeq:NP_716527.1 ProteinModelPortal:Q8EIE5
GeneID:1168744 KEGG:son:SO_0897 PATRIC:23521451 Uniprot:Q8EIE5
Length = 458
Score = 282 (104.3 bits), Expect = 3.4e-35, Sum P(2) = 3.4e-35
Identities = 78/225 (34%), Positives = 117/225 (52%)
Query: 19 SFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPII 78
+FS+L L + L + L +G+ T +QAQ++P IL+G V+ TG+GKT A+ ++
Sbjct: 2 AFSTLKLKTELLENLSS-MGYNEMTPIQAQSLPAILAGEDVIGQGKTGSGKTAAFGLGLL 60
Query: 79 NHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEK 138
N L RI LVL PTREL QV + + L H + + GG +
Sbjct: 61 NKLDVKRFRIQ------TLVLCPTRELADQVAQEIRTLARGIHNVKVLTLCGGVPMGPQI 114
Query: 139 ARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILG 198
L G I+V TPGR++DHL L +NL ++ DEADR+LE+GF +++ I+
Sbjct: 115 GSLEHGAHIIVGTPGRIVDHLDRNRLDL-SNLNMLVLDEADRMLEMGFQPQLDAII---- 169
Query: 199 SRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLI 243
E S +RQ LL SAT E++ +AK + PV++
Sbjct: 170 -----------EQSPRERQTLLFSATFPEQIQSIAKQIMYNPVMV 203
Score = 161 (61.7 bits), Expect = 3.4e-35, Sum P(2) = 3.4e-35
Identities = 38/121 (31%), Positives = 60/121 (49%)
Query: 366 LHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRVG 425
LHG+++Q DR T F + +L++TDVAARGLD + + Y A + ++HR+G
Sbjct: 270 LHGDLEQRDRDETLLQFANKSACVLVATDVAARGLDIDALDAVFNYHVAYDTEVHIHRIG 329
Query: 426 RTARLGERGDSLLFLQPVEMDYLQDLEKHGVSLTEYPLLKVLDSFPLYGQKPRVKKFLTT 485
RT R G +G + F + + LE++ L + L S L G P +T
Sbjct: 330 RTGRAGSKGAAYTFYNDQDGYKIALLEEY---LDREITSESLPSLSLLGSAPNAPTMITL 386
Query: 486 E 486
+
Sbjct: 387 Q 387
>UNIPROTKB|J9NZF6 [details] [associations]
symbol:DDX41 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR001878 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00343 SMART:SM00490 GO:GO:0005524
GO:GO:0008270 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 OMA:KDQEERS EMBL:AAEX03002959
Ensembl:ENSCAFT00000042923 Uniprot:J9NZF6
Length = 649
Score = 267 (99.0 bits), Expect = 3.6e-35, Sum P(2) = 3.6e-35
Identities = 76/234 (32%), Positives = 123/234 (52%)
Query: 19 SFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPII 78
SF + + + L+++ G PT +Q Q IP ILSGR ++ A TG+GKT+ + P+I
Sbjct: 209 SFKEMKFPAAILRGLKKK-GIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVI 267
Query: 79 NHLQSYSPRI--DRSSGTFALVLVPTRELCLQVYEILH---KLLHRFH--WIVPGYVMGG 131
R+ + G + L++ P+REL Q + IL +LL + +GG
Sbjct: 268 MFCLEQEKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIGG 327
Query: 132 ENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIE 191
+ ++ +R G+ ++VATPGRL+D L+ L R++ DEADR++++GF +I
Sbjct: 328 MSVKEQMETIRHGVHMMVATPGRLMDLLQKKMVSLDI-CRYLALDEADRMIDMGFEGDI- 385
Query: 192 EILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGL 245
R I S +G +RQ LL SAT+ +K+ + AK +L PV I +
Sbjct: 386 --------RTIFSYFKG------QRQTLLFSATMPKKIQNFAKSALVKPVTINV 425
Score = 188 (71.2 bits), Expect = 3.6e-35, Sum P(2) = 3.6e-35
Identities = 58/198 (29%), Positives = 95/198 (47%)
Query: 274 STTMRSTTEDFKLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVD 333
S TM ++F A LV+ V + G A L +++ + + K+V
Sbjct: 402 SATMPKKIQNFAKSA-LVKP-VTINVGRAGAASLDVIQEVEYVKEEAKMVYLLECLQKTP 459
Query: 334 FHYSLLSEFQWSPHSQPDMELKQLFLR-CKTFRLHGNMKQEDRRTTFGAFKTEKKALLLS 392
+ +E + + D + L L+ + +HG QE+R AF+ KK +L++
Sbjct: 460 PPVLIFAEKK----ADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGKKDVLVA 515
Query: 393 TDVAARGLDFPKVKCIIQYDSAGEATEYVHRVGRTARLGERGDSLLFLQPV-EMDYLQDL 451
TDVA++GLDFP ++ +I YD E YVHR+GRT R G G + F+ + L DL
Sbjct: 516 TDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFINKACDESVLMDL 575
Query: 452 EKHGVSLTEY--PLLKVL 467
+ + + P+L+VL
Sbjct: 576 KALLLEAKQKVPPVLQVL 593
Score = 41 (19.5 bits), Expect = 7.5e-11, Sum P(2) = 7.5e-11
Identities = 12/32 (37%), Positives = 14/32 (43%)
Query: 122 WIVPGYVMGGENRSKEKARLRKGISILVATPG 153
W P YV+ E R+RK ILV G
Sbjct: 173 WTPPRYVLSMSEERHE--RVRKKYHILVEGDG 202
>DICTYBASE|DDB_G0287361 [details] [associations]
symbol:ddx41 "DEAD box protein abstrakt"
species:44689 "Dictyostelium discoideum" [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0006396 "RNA processing" evidence=ISS] [GO:0046872
"metal ion binding" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR001650 InterPro:IPR001878
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS50158
PROSITE:PS51194 SMART:SM00343 SMART:SM00490 dictyBase:DDB_G0287361
GO:GO:0005524 GO:GO:0005634 GO:GO:0046872 GO:GO:0008270
GenomeReviews:CM000154_GR GO:GO:0003723 GO:GO:0006396
EMBL:AAFI02000100 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HSSP:P09052 RefSeq:XP_637262.1 ProteinModelPortal:Q54KG1 SMR:Q54KG1
IntAct:Q54KG1 EnsemblProtists:DDB0233452 GeneID:8626092
KEGG:ddi:DDB_G0287361 KO:K13116 OMA:DICRYLC Uniprot:Q54KG1
Length = 671
Score = 270 (100.1 bits), Expect = 3.9e-35, Sum P(2) = 3.9e-35
Identities = 71/236 (30%), Positives = 127/236 (53%)
Query: 19 SFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPII 78
+F + + + D L E+ G + P+ +Q Q +PVILSGR ++ A TG+GKT+ + P++
Sbjct: 223 TFKEMKIPKPVIDVLLEK-GIKKPSPIQVQGLPVILSGRDMIGIAYTGSGKTLVFTLPMV 281
Query: 79 NHLQSYSPRID--RSSGTFALVLVPTRELCLQVYEILHKLLHRFH------WIVPGYVMG 130
++ + G F L+L P+REL Q Y++++ + H + +G
Sbjct: 282 LFALEEECKLPIIQGEGPFGLILCPSRELARQTYDLVNSFTNALHKNGGHPQLRTLLAIG 341
Query: 131 GENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNL-RWIIFDEADRILELGFGKE 189
G + +++ +KG+ +++ATPGRLLD L ++ L +++ DEADR+++LGF +
Sbjct: 342 GIDLREQEHIFKKGVHMIIATPGRLLDLLNKKK--INFKLCKYLGLDEADRLIDLGFEDD 399
Query: 190 IEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGL 245
I +LD +N +RQ LL SAT+ +K+ A+ +L PV + +
Sbjct: 400 IRSVLD--------------NFTN-QRQTLLFSATMPKKIQEFARSALVLPVEVNV 440
Score = 185 (70.2 bits), Expect = 3.9e-35, Sum P(2) = 3.9e-35
Identities = 32/84 (38%), Positives = 55/84 (65%)
Query: 357 LFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGE 416
L + + +HG+ Q++R + AF+ KK +L++TDVA++GLDFP+++ +I +D E
Sbjct: 495 LLKQVEAVSIHGDKSQDERESAIKAFREGKKDVLVATDVASKGLDFPEIQHVINFDMPRE 554
Query: 417 ATEYVHRVGRTARLGERGDSLLFL 440
Y+HR+GRT R G +G + F+
Sbjct: 555 IENYIHRIGRTGRRGNKGVATTFI 578
Score = 37 (18.1 bits), Expect = 4.6e-10, Sum P(2) = 4.6e-10
Identities = 5/20 (25%), Positives = 11/20 (55%)
Query: 121 HWIVPGYVMGGENRSKEKAR 140
+W P Y++ + + +K R
Sbjct: 186 NWRAPRYILERDEKDHQKVR 205
>FB|FBgn0029979 [details] [associations]
symbol:CG10777 species:7227 "Drosophila melanogaster"
[GO:0003724 "RNA helicase activity" evidence=ISS] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:AE014298
GO:GO:0006200 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 GO:GO:0003724
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0016779
GeneTree:ENSGT00660000095174 HSSP:P10081 EMBL:AY060404
RefSeq:NP_572424.1 UniGene:Dm.101 SMR:Q9W3M7 DIP:DIP-18838N
MINT:MINT-850836 EnsemblMetazoa:FBtr0071132 GeneID:31707
KEGG:dme:Dmel_CG10777 UCSC:CG10777-RB FlyBase:FBgn0029979
InParanoid:Q9W3M7 OMA:FLENRNT OrthoDB:EOG4B8GV9 GenomeRNAi:31707
NextBio:774939 Uniprot:Q9W3M7
Length = 945
Score = 299 (110.3 bits), Expect = 3.9e-35, Sum P(2) = 3.9e-35
Identities = 65/178 (36%), Positives = 108/178 (60%)
Query: 19 SFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPII 78
SF L + + ++++ R GF PT +Q+Q P+ LSGR ++ A TG+GKT+AY+ P I
Sbjct: 238 SFEESSLPAHVIEEMK-RQGFTKPTAIQSQGWPIALSGRDLVGIAQTGSGKTLAYMLPAI 296
Query: 79 NHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFH-WIVPGYVMGGENRSKE 137
H+ + P I R G ALVL PTREL Q+ ++ H I + GG ++ +
Sbjct: 297 VHIGNQPPII-RGEGPIALVLAPTRELAQQIQSVVRDYGHLCKPEIRHTCIFGGSSKVPQ 355
Query: 138 KARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILD 195
L +G+ +++ATPGRL+D L++ ++ L +++ DEADR+L++GF +I +I++
Sbjct: 356 ARDLDRGVEVIIATPGRLIDFLENRNTNLQ-RCTYLVLDEADRMLDMGFEPQIRKIIE 412
Score = 158 (60.7 bits), Expect = 3.9e-35, Sum P(2) = 3.9e-35
Identities = 37/113 (32%), Positives = 60/113 (53%)
Query: 366 LHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRVG 425
+HG+ Q +R + F+ K +L++TDVA+RGLD ++ +I YD + YVHR+G
Sbjct: 521 IHGDKTQNERDSVLKDFRNGKSNILIATDVASRGLDVEDLQYVINYDYPNSSENYVHRIG 580
Query: 426 RTARLGERGDSLLFLQPVEMDYLQDL----EKHGVSLTEYPLLKVLDSFPLYG 474
RT R + G + F P ++L E+ G + ++ LL + S P G
Sbjct: 581 RTGRCQQLGTAYTFFTPDNAKQARELISVLEEAGQTPSQ-ALLDLARSMPSSG 632
>DICTYBASE|DDB_G0293168 [details] [associations]
symbol:ddx17 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008186 "RNA-dependent ATPase
activity" evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
[GO:0005634 "nucleus" evidence=IEA;ISS] [GO:0003724 "RNA helicase
activity" evidence=ISS] [GO:0003723 "RNA binding" evidence=IEA;ISS]
[GO:0042254 "ribosome biogenesis" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
dictyBase:DDB_G0293168 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
GenomeReviews:CM000155_GR GO:GO:0000184 GO:GO:0003723 GO:GO:0006396
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014
PROSITE:PS51195 EMBL:AAFI02000199 KO:K12823 GO:GO:0008186
RefSeq:XP_629279.1 HSSP:P09052 ProteinModelPortal:Q54CE0
PRIDE:Q54CE0 EnsemblProtists:DDB0233431 GeneID:8629001
KEGG:ddi:DDB_G0293168 Uniprot:Q54CE0
Length = 785
Score = 291 (107.5 bits), Expect = 5.2e-35, Sum P(2) = 5.2e-35
Identities = 64/157 (40%), Positives = 97/157 (61%)
Query: 38 GFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFAL 97
GF PT +Q+QA P+ L GR ++ A TG+GKT+A+L P I H+ + P + G L
Sbjct: 403 GFPNPTPIQSQAWPIALKGRDIIGLAKTGSGKTLAFLLPSIVHINA-QPVLREDDGPIVL 461
Query: 98 VLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLD 157
VL PTREL LQ+ E +K I V GG ++ + A L+KG+ I++ATPGRL+D
Sbjct: 462 VLAPTRELALQIQEETNKFGGTSQ-ISNTCVYGGASKHTQVAALKKGVEIVIATPGRLID 520
Query: 158 HLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEIL 194
L+ + L + +++ DEADR+L++GF +I +I+
Sbjct: 521 ILESGKTNLR-RVTYLVLDEADRMLDMGFEPQIRKII 556
Score = 163 (62.4 bits), Expect = 5.2e-35, Sum P(2) = 5.2e-35
Identities = 33/90 (36%), Positives = 48/90 (53%)
Query: 351 DMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQ 410
D++ F K+ +HGN Q +R FK ++++TDVA+RGLD +K ++
Sbjct: 644 DLQRVLQFSGFKSIGIHGNKSQPERDFVLSQFKNGMVPIMIATDVASRGLDIKDIKYVVN 703
Query: 411 YDSAGEATEYVHRVGRTARLGERGDSLLFL 440
YD Y+HR+GRTAR G G S L
Sbjct: 704 YDFPNTIEVYIHRIGRTARAGASGVSYSLL 733
Score = 137 (53.3 bits), Expect = 8.2e-18, Sum P(2) = 8.2e-18
Identities = 36/106 (33%), Positives = 60/106 (56%)
Query: 128 VMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFG 187
V GG ++ + A L+KG+ I++ATPGRL+D L+ + L + +++ DEADR+L++GF
Sbjct: 491 VYGGASKHTQVAALKKGVEIVIATPGRLIDILESGKTNLR-RVTYLVLDEADRMLDMGFE 549
Query: 188 KEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLA 233
+I +I+ + RQ L+ SAT ++V LA
Sbjct: 550 PQIRKIISQI---------------RPDRQTLMFSATWPKEVQALA 580
Score = 44 (20.5 bits), Expect = 3.5e-08, Sum P(2) = 3.5e-08
Identities = 18/75 (24%), Positives = 34/75 (45%)
Query: 226 NEKVNHLAKISLETPVLIGLDEKKLP--EDKSHVRFGSLESDVKEEVEHPSTTMRSTTED 283
N K N + S +P I D KLP E ++ + +EE+E + + T +
Sbjct: 319 NAKANTGSFGSALSP--ISWDLSKLPRFEKNFYLEHPDVSKFTQEEIEKFRASFQMTVKG 376
Query: 284 FKLPAQLVQRYVKVP 298
++P ++Q + + P
Sbjct: 377 REVPPPIMQ-FTQAP 390
>TAIR|locus:2828586 [details] [associations]
symbol:AT3G02065 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0009507
"chloroplast" evidence=ISM] InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0046872 GO:GO:0003723 EMBL:AC011664 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR007529 Pfam:PF04438
PROSITE:PS51083 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000006599 OMA:VTRPIID EMBL:AY065172
EMBL:BT001184 IPI:IPI00516794 IPI:IPI00525607 RefSeq:NP_001030621.1
RefSeq:NP_850499.1 RefSeq:NP_974208.1 UniGene:At.41185
UniGene:At.47211 ProteinModelPortal:Q3EBD3 SMR:Q3EBD3 IntAct:Q3EBD3
PaxDb:Q3EBD3 PRIDE:Q3EBD3 EnsemblPlants:AT3G02065.2
EnsemblPlants:AT3G02065.3 GeneID:821155 KEGG:ath:AT3G02065
GeneFarm:1017 TAIR:At3g02065 InParanoid:Q3EBD3 PhylomeDB:Q3EBD3
ProtClustDB:PLN00206 Genevestigator:Q3EBD3 Uniprot:Q3EBD3
Length = 505
Score = 289 (106.8 bits), Expect = 5.3e-35, Sum P(2) = 5.3e-35
Identities = 68/187 (36%), Positives = 107/187 (57%)
Query: 19 SFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPII 78
+F+S GL L L E G++ PT +Q QAIP L+G+ +L +A TG+GKT ++L PII
Sbjct: 111 TFTSCGLPPKLLLNL-ETAGYDFPTPIQMQAIPAALTGKSLLASADTGSGKTASFLVPII 169
Query: 79 NHLQSYSPR--IDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSK 136
+ +Y D+ A+VL PTRELC+QV E K+L + V+GG+ S
Sbjct: 170 SRCTTYHSEHPSDQRRNPLAMVLAPTRELCVQV-EDQAKMLGKGLPFKTALVVGGDPMSG 228
Query: 137 EKARLRKGISILVATPGRLLDHL-KHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILD 195
+ R+++G+ +++ TPGR++D L KHT N+ + DE D +L+ GF ++ +I
Sbjct: 229 QLYRIQQGVELIIGTPGRVVDLLSKHTIEL--DNIMTFVLDEVDCMLQRGFRDQVMQIFQ 286
Query: 196 ILGSRNI 202
L +
Sbjct: 287 ALSQPQV 293
Score = 155 (59.6 bits), Expect = 5.3e-35, Sum P(2) = 5.3e-35
Identities = 36/122 (29%), Positives = 66/122 (54%)
Query: 362 KTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYV 421
K +HG ++RR G+F + +L+ST V RG+D V+ +I +D EY+
Sbjct: 384 KALSIHGEKPMKERRDVMGSFLGGEVPVLVSTGVLGRGVDLLVVRQVIVFDMPSTIKEYI 443
Query: 422 HRVGRTARLGERGDSLLFLQPVEMDYLQDL----EKHGVSLTEYPLLKVLDSFPLYGQKP 477
H +GR +R+GE+G +++F+ + + DL + G ++ + L+ L S ++ +K
Sbjct: 444 HVIGRASRMGEKGTAIVFVNEDDRNLFPDLVAALKSSGAAIPK-ELIN-LTSREMHNKKR 501
Query: 478 RV 479
RV
Sbjct: 502 RV 503
Score = 55 (24.4 bits), Expect = 5.2e-09, Sum P(2) = 5.2e-09
Identities = 31/135 (22%), Positives = 57/135 (42%)
Query: 169 NLRWIIFDEADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEK 228
N+ + DE D +L+ GF ++ +I L + LL SAT++ +
Sbjct: 260 NIMTFVLDEVDCMLQRGFRDQVMQIFQALSQPQV----------------LLFSATISRE 303
Query: 229 VNHLAKISLETPVLIGLDEKKLPEDKSHVRFGSLESDVKEEVEHPSTTMRSTTEDFKLPA 288
V + + +L+ + P +K+ V ++ D K++ + +RS FK PA
Sbjct: 304 VEKVGGSLAKEIILVSIGNPNKP-NKA-VNQLAIWVDAKQKKQKLFDILRSQNH-FKPPA 360
Query: 289 QLVQRYVKVPCGSRL 303
+ YV G+ L
Sbjct: 361 VV---YVSSRVGADL 372
>POMBASE|SPAC31A2.07c [details] [associations]
symbol:dbp10 "ATP-dependent RNA helicase Dbp10
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISO] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=ISO;IDA] [GO:0006364 "rRNA processing" evidence=IEA]
[GO:0042254 "ribosome biogenesis" evidence=ISO] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012541
Pfam:PF00270 Pfam:PF00271 Pfam:PF08147 ProDom:PD024971
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 PomBase:SPAC31A2.07c
GO:GO:0005524 EMBL:CU329670 GO:GO:0005730 GenomeReviews:CU329670_GR
GO:GO:0042254 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0004004 InterPro:IPR014014
PROSITE:PS51195 KO:K14808 HOGENOM:HOG000246455 OrthoDB:EOG4JWZP1
EMBL:AB027882 PIR:S59645 RefSeq:NP_592919.1
ProteinModelPortal:Q09719 STRING:Q09719 EnsemblFungi:SPAC31A2.07c.1
GeneID:2543197 KEGG:spo:SPAC31A2.07c OMA:FYIPYRP NextBio:20804220
Uniprot:Q09719
Length = 848
Score = 292 (107.8 bits), Expect = 5.4e-35, Sum P(2) = 5.4e-35
Identities = 70/197 (35%), Positives = 119/197 (60%)
Query: 1 MIKMSKKKETVKEIFASCSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVL 60
+++ +++ + K + +F S+GL+ TL + ++ GF+APT +Q + IP++L GR V+
Sbjct: 52 LLESNRRTKGKKGNGKASNFQSMGLNQTLLRAIFKK-GFKAPTPIQRKTIPLLLEGRDVV 110
Query: 61 VNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRF 120
A TG+GKT A++ P+I HL+S +S T AL+L P REL LQ +++ K +
Sbjct: 111 GMARTGSGKTAAFVIPMIEHLKSTLA----NSNTRALILSPNRELALQTVKVV-KDFSKG 165
Query: 121 HWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADR 180
+ ++GG + ++ + L I+VATPGR L HLK +++ +++FDEADR
Sbjct: 166 TDLRSVAIVGGVSLEEQFSLLSGKPDIVVATPGRFL-HLKVEMKLELSSIEYVVFDEADR 224
Query: 181 ILELGFGKEIEEILDIL 197
+ E+GF ++ EIL L
Sbjct: 225 LFEMGFAAQLTEILHAL 241
Score = 164 (62.8 bits), Expect = 1.5e-20, Sum P(2) = 1.5e-20
Identities = 49/142 (34%), Positives = 75/142 (52%)
Query: 128 VMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFG 187
++GG + ++ + L I+VATPGR L HLK +++ +++FDEADR+ E+GF
Sbjct: 173 IVGGVSLEEQFSLLSGKPDIVVATPGRFL-HLKVEMKLELSSIEYVVFDEADRLFEMGFA 231
Query: 188 KEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLD- 246
++ EIL L + RQ LL SATL + AK L+ PVL+ LD
Sbjct: 232 AQLTEILHALPT---------------SRQTLLFSATLPRTLVDFAKAGLQDPVLVRLDV 276
Query: 247 EKKLPEDKSHVRFGSLESDVKE 268
E K+ D F S+++ +E
Sbjct: 277 ESKVSADLQSAFF-SVKTAERE 297
Score = 163 (62.4 bits), Expect = 5.4e-35, Sum P(2) = 5.4e-35
Identities = 34/88 (38%), Positives = 52/88 (59%)
Query: 365 RLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRV 424
+++G++ QE R F+ K LL+ TDVA+RG+D P + +I YD + +VHRV
Sbjct: 375 KIYGSLDQEARLNEINNFRLGKTNLLVVTDVASRGIDIPLLANVINYDFPPQPKVFVHRV 434
Query: 425 GRTARLGERGDSLLFLQPVEMDYLQDLE 452
GRTAR G G + ++ + YL DL+
Sbjct: 435 GRTARAGRTGWAYSLVRAEDAGYLLDLQ 462
Score = 43 (20.2 bits), Expect = 2.0e-22, Sum P(2) = 2.0e-22
Identities = 8/23 (34%), Positives = 14/23 (60%)
Query: 263 ESDVKEEVEHPSTTMRSTTEDFK 285
ES+++E ++P + T DFK
Sbjct: 639 ESELEEVFKNPKELSKKKTTDFK 661
>TAIR|locus:2065215 [details] [associations]
symbol:AT2G47330 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0003723 EMBL:AC002337 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 UniGene:At.12226 UniGene:At.25582
HOGENOM:HOG000268793 KO:K12835 EMBL:AY057700 EMBL:AY124871
IPI:IPI00516775 PIR:H84913 RefSeq:NP_566099.1
ProteinModelPortal:O22907 SMR:O22907 STRING:O22907 PaxDb:O22907
PRIDE:O22907 EnsemblPlants:AT2G47330.1 GeneID:819346
KEGG:ath:AT2G47330 GeneFarm:942 TAIR:At2g47330 InParanoid:O22907
OMA:QEYANLM PhylomeDB:O22907 ProtClustDB:CLSN2688982
Genevestigator:O22907 GermOnline:AT2G47330 Uniprot:O22907
Length = 760
Score = 291 (107.5 bits), Expect = 5.8e-35, Sum P(2) = 5.8e-35
Identities = 60/176 (34%), Positives = 102/176 (57%)
Query: 19 SFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPII 78
+F G S + ++++ +E PT +Q QA+P++LSGR V+ A TG+GKT A++ P+I
Sbjct: 229 TFEDCGFSSQIMSAIKKQ-AYEKPTAIQCQALPIVLSGRDVIGIAKTGSGKTAAFVLPMI 287
Query: 79 NHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEK 138
H+ P + R G ++ PTREL Q++ + K + + + V GG ++ ++
Sbjct: 288 VHIMD-QPELQRDEGPIGVICAPTRELAHQIF-LEAKKFSKAYGLRVSAVYGGMSKHEQF 345
Query: 139 ARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEIL 194
L+ G I+VATPGRL+D LK + +++ DEADR+ +LGF ++ I+
Sbjct: 346 KELKAGCEIVVATPGRLIDMLK-MKALTMMRASYLVLDEADRMFDLGFEPQVRSIV 400
Score = 162 (62.1 bits), Expect = 5.8e-35, Sum P(2) = 5.8e-35
Identities = 35/79 (44%), Positives = 47/79 (59%)
Query: 356 QLFLRC-KTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSA 414
QL L K LHG+ Q R T FK+ +L++TDVAARGLD +K ++ YD A
Sbjct: 492 QLTLNSFKVAALHGDKDQASRMETLQKFKSGVHHVLIATDVAARGLDIKSLKTVVNYDIA 551
Query: 415 GEATEYVHRVGRTARLGER 433
+ +VHR+GRT R G+R
Sbjct: 552 KDMDMHVHRIGRTGRAGDR 570
Score = 150 (57.9 bits), Expect = 4.3e-19, Sum P(2) = 4.3e-19
Identities = 51/175 (29%), Positives = 81/175 (46%)
Query: 101 PTRELCLQVYEILHKLLHRFHWIVPGY------VMGGENRSKEKARLRKGISILVATPGR 154
P +C E+ H++ Y V GG ++ ++ L+ G I+VATPGR
Sbjct: 302 PIGVICAPTRELAHQIFLEAKKFSKAYGLRVSAVYGGMSKHEQFKELKAGCEIVVATPGR 361
Query: 155 LLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNV 214
L+D LK + +++ DEADR+ +LGF ++ I +G I
Sbjct: 362 LIDMLK-MKALTMMRASYLVLDEADRMFDLGFEPQVRSI--------VGQI-------RP 405
Query: 215 KRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLP-EDKSHVRFGSLESDVKE 268
RQ LL SAT+ KV LA+ L P+ + + E + ED + V + SD ++
Sbjct: 406 DRQTLLFSATMPWKVEKLAREILSDPIRVTVGEVGMANEDITQV-VNVIPSDAEK 459
Score = 51 (23.0 bits), Expect = 7.9e-09, Sum P(2) = 7.9e-09
Identities = 26/110 (23%), Positives = 49/110 (44%)
Query: 238 ETPVLIGLDEKKLPE----DKSHVRFGSLESDVKEEVEHPSTTMRSTTEDFK--LPAQL- 290
+ P+++ D++K+ D S + + + D EE+E S T D++ L ++
Sbjct: 162 DNPIVV--DKRKIEPITALDHSSIDYEPINKDFYEELESISGMTEQETTDYRQRLGIRVS 219
Query: 291 ---VQRYVKV--PCGSRLAVLLSILKHLFD--TEVS-QKLVVFFSTCDAV 332
V R VK CG ++ +I K ++ T + Q L + S D +
Sbjct: 220 GFDVHRPVKTFEDCGFSSQIMSAIKKQAYEKPTAIQCQALPIVLSGRDVI 269
>TAIR|locus:2159517 [details] [associations]
symbol:PDE340 "PIGMENT DEFECTIVE 340" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA;ISS] [GO:0009507 "chloroplast"
evidence=IDA] [GO:0009220 "pyrimidine ribonucleotide biosynthetic
process" evidence=RCA] InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0009507 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268799 EMBL:AB006697 EMBL:AJ010474
IPI:IPI00522710 PIR:T51747 RefSeq:NP_196478.2 UniGene:At.32551
ProteinModelPortal:Q9FNM7 SMR:Q9FNM7 STRING:Q9FNM7 PaxDb:Q9FNM7
PRIDE:Q9FNM7 EnsemblPlants:AT5G08610.1 GeneID:830762
KEGG:ath:AT5G08610 GeneFarm:949 TAIR:At5g08610 InParanoid:Q9FNM7
OMA:GRNDRNV PhylomeDB:Q9FNM7 ProtClustDB:CLSN2918084
Genevestigator:Q9FNM7 GermOnline:AT5G08610 Uniprot:Q9FNM7
Length = 850
Score = 283 (104.7 bits), Expect = 6.5e-35, Sum P(3) = 6.5e-35
Identities = 78/207 (37%), Positives = 113/207 (54%)
Query: 38 GFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSP--RIDRSSGTF 95
GFE T VQ +P+IL G+ VL A TGTGKTVA+L P I + P R R
Sbjct: 401 GFETMTVVQEATLPIILQGKDVLAKAKTGTGKTVAFLLPAIEAVIKSPPASRDSRQPPII 460
Query: 96 ALVLVPTRELCLQVYEILHKLLHRFH-WIVPGYVMGGENRSKEKARLRKG-ISILVATPG 153
LV+ PTREL Q + LL ++H I V+GG E+ R++ ILVATPG
Sbjct: 461 VLVVCPTRELASQAAAEANTLL-KYHPSIGVQVVIGGTKLPTEQRRMQTNPCQILVATPG 519
Query: 154 RLLDHLKHTSSFLHT--NLRWIIFDEADRILELGFGKEIEEILDILGSRNIGSIGEGNEV 211
RL DH+++TS F ++ ++ DEAD +L++GF ++IE I I ++ +
Sbjct: 520 RLKDHIENTSGFATRLMGVKVLVLDEADHLLDMGFRRDIERI--------IAAVPK---- 567
Query: 212 SNVKRQNLLLSATLNEKVNHLAKISLE 238
+RQ L SAT+ E+V + ++L+
Sbjct: 568 ---QRQTFLFSATVPEEVRQICHVALK 591
Score = 169 (64.5 bits), Expect = 6.5e-35, Sum P(3) = 6.5e-35
Identities = 37/110 (33%), Positives = 60/110 (54%)
Query: 354 LKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDS 413
L QL L + +H Q R F+ K +L+++DV+ARG+D+P V ++Q
Sbjct: 660 LSQLSLNVR--EIHSRKPQSYRTRVSDEFRKSKAIILVTSDVSARGVDYPDVSLVVQMGL 717
Query: 414 AGEATEYVHRVGRTARLGERGDSLLFLQPVEMDYLQDLEKHGVSLTEYPL 463
+ +Y+HR+GRT R G+ G+ +L L P E +Y K + +T+ PL
Sbjct: 718 PSDREQYIHRLGRTGRKGKEGEGVLLLAPWE-EYFMSSVKD-LPITKSPL 765
Score = 44 (20.5 bits), Expect = 6.5e-35, Sum P(3) = 6.5e-35
Identities = 14/54 (25%), Positives = 26/54 (48%)
Query: 289 QLVQRYVKVPCGSRLAVLLSILK-HLFDTEVSQKLVVFFSTCDAVDFHYSLLSE 341
++ Q Y+ ++L +LK H+ D V K+++F +T LLS+
Sbjct: 610 KVTQMYMIASLDRHFSLLHVLLKEHIADN-VDYKVIIFCTTAMVTRLVADLLSQ 662
>WB|WBGene00006888 [details] [associations]
symbol:vbh-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040010 "positive regulation of
growth rate" evidence=IMP] [GO:0032502 "developmental process"
evidence=IMP] [GO:0040035 "hermaphrodite genitalia development"
evidence=IMP] [GO:0042006 "masculinization of hermaphroditic
germ-line" evidence=IMP] [GO:0042127 "regulation of cell
proliferation" evidence=IMP] [GO:0040020 "regulation of meiosis"
evidence=IMP] [GO:0007281 "germ cell development" evidence=IMP]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0043186 "P granule"
evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0009792
GO:GO:0040010 GO:GO:0003676 GO:GO:0042127 GO:GO:0040035
GO:GO:0007281 GO:GO:0040020 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0043186 GeneTree:ENSGT00620000087942
HOGENOM:HOG000268804 KO:K11594 OMA:DELLMEN EMBL:FO081614
GO:GO:0042006 RefSeq:NP_001021793.1 UniGene:Cel.16952
ProteinModelPortal:Q65XX1 SMR:Q65XX1 IntAct:Q65XX1
MINT:MINT-6669731 STRING:Q65XX1 PaxDb:Q65XX1 PRIDE:Q65XX1
EnsemblMetazoa:Y54E10A.9c.1 EnsemblMetazoa:Y54E10A.9c.2
GeneID:171888 KEGG:cel:CELE_Y54E10A.9 UCSC:Y54E10A.9a CTD:171888
WormBase:Y54E10A.9c InParanoid:Q65XX1 NextBio:873115
ArrayExpress:Q65XX1 Uniprot:Q65XX1
Length = 660
Score = 274 (101.5 bits), Expect = 6.6e-35, Sum P(2) = 6.6e-35
Identities = 77/225 (34%), Positives = 123/225 (54%)
Query: 20 FSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIIN 79
F+ G + + + R G+ PT VQ +IP +L+ R ++ A TG+GKT A+L PII
Sbjct: 141 FNEAGFGPAVMENVN-RSGYSKPTPVQKHSIPTLLANRDLMSCAQTGSGKTAAFLLPIIQ 199
Query: 80 HLQSYSPRIDR----SSG--TF---ALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMG 130
H+ + P + + ++G T+ ALVL PTREL +Q+++ K ++ + I + G
Sbjct: 200 HILAGGPDMVKPPAFTNGRRTYYPCALVLSPTRELAIQIHKEATKFSYKSN-IQTAILYG 258
Query: 131 G-ENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKE 189
G EN + RLR G IL+ATPGRL+D ++ L R+++ DEADR+L++GF +
Sbjct: 259 GRENYRDQVNRLRAGTHILIATPGRLIDIIEQGFIGL-AGCRYLVLDEADRMLDMGFEPQ 317
Query: 190 IEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAK 234
I +I +G+G R + SAT +++ LAK
Sbjct: 318 IRKI-----------VGQGMPPKTA-RTTAMFSATFPKEIQVLAK 350
Score = 178 (67.7 bits), Expect = 6.6e-35, Sum P(2) = 6.6e-35
Identities = 35/91 (38%), Positives = 55/91 (60%)
Query: 362 KTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYV 421
++ +HG++KQ +R F++ + +L++T VAARGLD P V+ +I YD G++ EYV
Sbjct: 424 RSVSIHGDLKQIERERNLELFRSGQCPILVATAVAARGLDIPNVRHVINYDLPGDSDEYV 483
Query: 422 HRVGRTARLGERGDSLLFLQPVEMDYLQDLE 452
HR+GRT R G G + F +DL+
Sbjct: 484 HRIGRTGRCGNLGIATSFFNDKNRGIGRDLK 514
Score = 42 (19.8 bits), Expect = 1.1e-20, Sum P(2) = 1.1e-20
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 412 DSAGEATEYVHRVGRTARLG--ERGDSLLF 439
+S E E++H+V R+G +RG + F
Sbjct: 519 ESNQEVPEWLHQVAAEGRIGGGQRGGNRRF 548
>MGI|MGI:1920185 [details] [associations]
symbol:Ddx41 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 41"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IDA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0005783
"endoplasmic reticulum" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0035458 "cellular response to
interferon-beta" evidence=IMP] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IDA]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0051607 "defense
response to virus" evidence=IMP] [GO:0071013 "catalytic step 2
spliceosome" evidence=ISO] InterPro:IPR001650 InterPro:IPR001878
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS50158 PROSITE:PS51194 SMART:SM00343 SMART:SM00490
MGI:MGI:1920185 GO:GO:0005783 GO:GO:0005524 GO:GO:0005634
GO:GO:0008380 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
GO:GO:0006397 GO:GO:0045944 GO:GO:0051607 GO:GO:0003723
GO:GO:0035458 GO:GO:0071013 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00620000087942 HOVERGEN:HBG015893
KO:K13116 OMA:KDQEERS CTD:51428 HOGENOM:HOG000268792
OrthoDB:EOG4CVG6K EMBL:AK156957 EMBL:BC011308 IPI:IPI00127071
RefSeq:NP_598820.2 UniGene:Mm.205045 ProteinModelPortal:Q91VN6
SMR:Q91VN6 IntAct:Q91VN6 STRING:Q91VN6 PhosphoSite:Q91VN6
PaxDb:Q91VN6 PRIDE:Q91VN6 Ensembl:ENSMUST00000021956 GeneID:72935
KEGG:mmu:72935 InParanoid:Q3U0E0 NextBio:337171 Bgee:Q91VN6
CleanEx:MM_DDX41 Genevestigator:Q91VN6
GermOnline:ENSMUSG00000021494 Uniprot:Q91VN6
Length = 622
Score = 264 (98.0 bits), Expect = 6.7e-35, Sum P(2) = 6.7e-35
Identities = 76/234 (32%), Positives = 123/234 (52%)
Query: 19 SFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPII 78
SF + + + L+++ G PT +Q Q IP ILSGR ++ A TG+GKT+ + P+I
Sbjct: 182 SFKEMKFPAAILRGLKKK-GILHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVI 240
Query: 79 NHLQSYSPRI--DRSSGTFALVLVPTRELCLQVYEILH---KLLHRFH--WIVPGYVMGG 131
R+ + G + L++ P+REL Q + IL +LL + +GG
Sbjct: 241 MFCLEQEKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIGG 300
Query: 132 ENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIE 191
+ ++ +R G+ ++VATPGRL+D L+ L R++ DEADR++++GF +I
Sbjct: 301 MSVKEQMETIRHGVHMMVATPGRLMDLLQKKMVSLDI-CRYLALDEADRMIDMGFEGDI- 358
Query: 192 EILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGL 245
R I S +G +RQ LL SAT+ +K+ + AK +L PV I +
Sbjct: 359 --------RTIFSYFKG------QRQTLLFSATMPKKIQNFAKSALVKPVTINV 398
Score = 188 (71.2 bits), Expect = 6.7e-35, Sum P(2) = 6.7e-35
Identities = 58/198 (29%), Positives = 95/198 (47%)
Query: 274 STTMRSTTEDFKLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVD 333
S TM ++F A LV+ V + G A L +++ + + K+V
Sbjct: 375 SATMPKKIQNFAKSA-LVKP-VTINVGRAGAASLDVIQEVEYVKEEAKMVYLLECLQKTP 432
Query: 334 FHYSLLSEFQWSPHSQPDMELKQLFLR-CKTFRLHGNMKQEDRRTTFGAFKTEKKALLLS 392
+ +E + + D + L L+ + +HG QE+R AF+ KK +L++
Sbjct: 433 PPVLIFAEKK----ADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGKKDVLVA 488
Query: 393 TDVAARGLDFPKVKCIIQYDSAGEATEYVHRVGRTARLGERGDSLLFLQPV-EMDYLQDL 451
TDVA++GLDFP ++ +I YD E YVHR+GRT R G G + F+ + L DL
Sbjct: 489 TDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFINKACDESVLMDL 548
Query: 452 EKHGVSLTEY--PLLKVL 467
+ + + P+L+VL
Sbjct: 549 KALLLEAKQKVPPVLQVL 566
Score = 41 (19.5 bits), Expect = 6.5e-11, Sum P(2) = 6.5e-11
Identities = 12/32 (37%), Positives = 14/32 (43%)
Query: 122 WIVPGYVMGGENRSKEKARLRKGISILVATPG 153
W P YV+ E R+RK ILV G
Sbjct: 146 WTPPRYVLSMSEERHE--RVRKKYHILVEGDG 175
>FB|FBgn0036104 [details] [associations]
symbol:CG6418 species:7227 "Drosophila melanogaster"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0004386 "helicase activity" evidence=ISS] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:AE014296 GO:GO:0006200
GO:GO:0003676 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HSSP:Q58083 KO:K12835 OMA:QGVNNTA
GeneTree:ENSGT00610000086076 EMBL:AY061400 RefSeq:NP_648413.1
UniGene:Dm.922 SMR:Q9VTC1 IntAct:Q9VTC1 MINT:MINT-311970
STRING:Q9VTC1 EnsemblMetazoa:FBtr0076274 GeneID:39218
KEGG:dme:Dmel_CG6418 UCSC:CG6418-RB FlyBase:FBgn0036104
InParanoid:Q9VTC1 OrthoDB:EOG4KKWJ0 ChiTaRS:CG6418 GenomeRNAi:39218
NextBio:812543 Uniprot:Q9VTC1
Length = 791
Score = 272 (100.8 bits), Expect = 7.1e-35, Sum P(2) = 7.1e-35
Identities = 62/175 (35%), Positives = 97/175 (55%)
Query: 19 SFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPII 78
SF G L +R + + PT +QAQA+P LSGR ++ A TG+GKT A++ P++
Sbjct: 270 SFGHFGFDEQLIKAVR-KAEYTQPTPIQAQAVPTALSGRDIIGIAKTGSGKTAAFIWPML 328
Query: 79 NHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEK 138
H+ ++ G L+L PTREL LQ+Y K ++ V GG + K
Sbjct: 329 MHVMDQK-QLKPGDGPIGLILAPTRELSLQIYNEAKKFGKVYNLNVVCCYGGGSKWEQSK 387
Query: 139 ARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEI 193
A L +G I+VATPGR++D +K ++ L + +++ DEADR+ +GF ++ I
Sbjct: 388 A-LEQGAEIIVATPGRMIDMVKMKATNLR-RVTFLVLDEADRMFHMGFEPQVRSI 440
Score = 183 (69.5 bits), Expect = 7.1e-35, Sum P(2) = 7.1e-35
Identities = 33/89 (37%), Positives = 56/89 (62%)
Query: 366 LHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRVG 425
LHG+M Q DR FK ++ +L++TDVAARGLD P ++ ++ YD+A + + HR+G
Sbjct: 544 LHGDMDQADRNKVITQFKRKECDILVATDVAARGLDIPHIRNVVNYDTARDIETHTHRIG 603
Query: 426 RTARLGERGDSLLFLQPVEMDYLQDLEKH 454
RT R GE+G++ + + ++ L ++
Sbjct: 604 RTGRAGEKGNAYTLVTDKDKEFAGHLVRN 632
Score = 131 (51.2 bits), Expect = 2.2e-19, Sum P(2) = 2.2e-19
Identities = 36/114 (31%), Positives = 60/114 (52%)
Query: 130 GGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKE 189
GG ++ ++ L +G I+VATPGR++D +K ++ L + +++ DEADR+ +GF +
Sbjct: 378 GGGSKWEQSKALEQGAEIIVATPGRMIDMVKMKATNLR-RVTFLVLDEADRMFHMGFEPQ 436
Query: 190 IEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLI 243
+ I N V RQ L+ SAT +++ LA+ L PV I
Sbjct: 437 VRSIC--------------NHV-RPDRQCLMFSATFKKRIERLARDVLSDPVRI 475
>ASPGD|ASPL0000077157 [details] [associations]
symbol:AN10557 species:162425 "Emericella nidulans"
[GO:0071470 "cellular response to osmotic stress" evidence=IEA]
[GO:0007346 "regulation of mitotic cell cycle" evidence=IEA]
[GO:0031137 "regulation of conjugation with cellular fusion"
evidence=IEA] [GO:0002183 "cytoplasmic translational initiation"
evidence=IEA] [GO:0031047 "gene silencing by RNA" evidence=IEA]
[GO:0010628 "positive regulation of gene expression" evidence=IEA]
[GO:0097308 "cellular response to farnesol" evidence=IEP]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IEA] [GO:0033592 "RNA strand annealing activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
GO:GO:0003743 EMBL:BN001303 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
OMA:GNWANAN EMBL:AACD01000077 ProteinModelPortal:C8V8H4 SMR:C8V8H4
PRIDE:C8V8H4 EnsemblFungi:CADANIAT00005985 Uniprot:C8V8H4
Length = 668
Score = 289 (106.8 bits), Expect = 7.3e-35, Sum P(2) = 7.3e-35
Identities = 73/219 (33%), Positives = 119/219 (54%)
Query: 39 FEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSS--GTF- 95
++ PT VQ +IP++++GR ++ A TG+GKT +L PI++ P S G F
Sbjct: 206 YQTPTPVQKYSIPIVMNGRDLMACAQTGSGKTGGFLFPILSQAYQNGPAAPPPSAAGQFG 265
Query: 96 --------ALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISI 147
+L+L PTREL Q+++ K +R W+ P V GG + + ++ +G +
Sbjct: 266 RQRKAYPTSLILAPTRELVSQIFDEARKFAYR-SWVRPCVVYGGADIGSQLRQIERGCDL 324
Query: 148 LVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILGSRNIGSIGE 207
LVATPGRL+D ++ L N++++I DEADR+L++GF +I I+ E
Sbjct: 325 LVATPGRLVDLIERGRISL-VNIKYLILDEADRMLDMGFEPQIRRIV------------E 371
Query: 208 GNEVSNVK-RQNLLLSATLNEKVNHLAKISLETPVLIGL 245
G ++ NV RQ L+ SAT + LA+ L+ V + +
Sbjct: 372 GEDMPNVNDRQTLMFSATFPRDIQMLARDFLKDYVFLSV 410
Score = 161 (61.7 bits), Expect = 7.3e-35, Sum P(2) = 7.3e-35
Identities = 32/86 (37%), Positives = 48/86 (55%)
Query: 366 LHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRVG 425
+HG+ Q +R F++ + +L++T VAARGLD P V +I YD + +YVHR+G
Sbjct: 476 IHGDRTQRERERALEMFRSGRYPILVATAVAARGLDIPNVTHVINYDLPTDIDDYVHRIG 535
Query: 426 RTARLGERGDSLLFLQPVEMDYLQDL 451
RT R G G + F ++DL
Sbjct: 536 RTGRAGNTGIATAFFNRGNRGVVRDL 561
>GENEDB_PFALCIPARUM|PF14_0437 [details] [associations]
symbol:PF14_0437 "helicase, truncated,
putative" species:5833 "Plasmodium falciparum" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:AE014187 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
RefSeq:XP_001348611.2 ProteinModelPortal:Q8IL13 IntAct:Q8IL13
MINT:MINT-1661155 PRIDE:Q8IL13 EnsemblProtists:PF14_0437:mRNA
GeneID:812019 KEGG:pfa:PF14_0437 EuPathDB:PlasmoDB:PF3D7_1445900
HOGENOM:HOG000199241 ProtClustDB:PTZ00110 Uniprot:Q8IL13
Length = 527
Score = 248 (92.4 bits), Expect = 7.3e-35, Sum P(2) = 7.3e-35
Identities = 59/177 (33%), Positives = 97/177 (54%)
Query: 19 SFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPII 78
S + +G + L+ APT +Q Q P+ LSG+ ++ A TG+GKT+A++ P
Sbjct: 114 SINKIGFPDYVIKSLKNN-NIVAPTPIQIQGWPIALSGKDMIGKAETGSGKTLAFILPAF 172
Query: 79 NHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEK 138
H+ + P + G LVL PTREL Q+ + K I GG +S +
Sbjct: 173 VHILA-QPNLKYGDGPIVLVLAPTRELAEQIRQECIKFSTESK-IRNTCAYGGVPKSGQI 230
Query: 139 ARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILD 195
L++G+ IL+A PGRL+D L+ + L + +++ DEAD++L++GF +I +I+D
Sbjct: 231 YALKQGVHILIACPGRLIDLLEQNVTNL-MRVTYLVLDEADKMLDMGFELQIRKIVD 286
Score = 202 (76.2 bits), Expect = 7.3e-35, Sum P(2) = 7.3e-35
Identities = 39/88 (44%), Positives = 54/88 (61%)
Query: 366 LHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRVG 425
+HG+ KQE+RR FKT K ++++TDVA+RGLD VK +I +D + +YVHR+G
Sbjct: 390 IHGDKKQEERRWVLNEFKTGKSPIMIATDVASRGLDIKNVKYVINFDFPNQIEDYVHRIG 449
Query: 426 RTARLGERGDSLLFLQPVEMDYLQDLEK 453
RT R G G S FL + +DL K
Sbjct: 450 RTGRAGSHGASFTFLTADKYRLAKDLVK 477
Score = 130 (50.8 bits), Expect = 5.3e-22, Sum P(2) = 5.3e-22
Identities = 39/127 (30%), Positives = 68/127 (53%)
Query: 130 GGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKE 189
GG +S + L++G+ IL+A PGRL+D L+ + L + +++ DEAD++L++GF +
Sbjct: 222 GGVPKSGQIYALKQGVHILIACPGRLIDLLEQNVTNL-MRVTYLVLDEADKMLDMGFELQ 280
Query: 190 IEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAK-ISLETPVLIGLDEK 248
I +I+D + RQ L+ SAT ++V LAK + E P+ + +
Sbjct: 281 IRKIVDQI---------------RPDRQTLMWSATWPKEVQALAKDLCKEQPIQVNVGSL 325
Query: 249 KLPEDKS 255
L +S
Sbjct: 326 TLTACRS 332
>UNIPROTKB|Q8IL13 [details] [associations]
symbol:PF14_0437 "Helicase, putative" species:36329
"Plasmodium falciparum 3D7" [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:AE014187
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 RefSeq:XP_001348611.2
ProteinModelPortal:Q8IL13 IntAct:Q8IL13 MINT:MINT-1661155
PRIDE:Q8IL13 EnsemblProtists:PF14_0437:mRNA GeneID:812019
KEGG:pfa:PF14_0437 EuPathDB:PlasmoDB:PF3D7_1445900
HOGENOM:HOG000199241 ProtClustDB:PTZ00110 Uniprot:Q8IL13
Length = 527
Score = 248 (92.4 bits), Expect = 7.3e-35, Sum P(2) = 7.3e-35
Identities = 59/177 (33%), Positives = 97/177 (54%)
Query: 19 SFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPII 78
S + +G + L+ APT +Q Q P+ LSG+ ++ A TG+GKT+A++ P
Sbjct: 114 SINKIGFPDYVIKSLKNN-NIVAPTPIQIQGWPIALSGKDMIGKAETGSGKTLAFILPAF 172
Query: 79 NHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEK 138
H+ + P + G LVL PTREL Q+ + K I GG +S +
Sbjct: 173 VHILA-QPNLKYGDGPIVLVLAPTRELAEQIRQECIKFSTESK-IRNTCAYGGVPKSGQI 230
Query: 139 ARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILD 195
L++G+ IL+A PGRL+D L+ + L + +++ DEAD++L++GF +I +I+D
Sbjct: 231 YALKQGVHILIACPGRLIDLLEQNVTNL-MRVTYLVLDEADKMLDMGFELQIRKIVD 286
Score = 202 (76.2 bits), Expect = 7.3e-35, Sum P(2) = 7.3e-35
Identities = 39/88 (44%), Positives = 54/88 (61%)
Query: 366 LHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRVG 425
+HG+ KQE+RR FKT K ++++TDVA+RGLD VK +I +D + +YVHR+G
Sbjct: 390 IHGDKKQEERRWVLNEFKTGKSPIMIATDVASRGLDIKNVKYVINFDFPNQIEDYVHRIG 449
Query: 426 RTARLGERGDSLLFLQPVEMDYLQDLEK 453
RT R G G S FL + +DL K
Sbjct: 450 RTGRAGSHGASFTFLTADKYRLAKDLVK 477
Score = 130 (50.8 bits), Expect = 5.3e-22, Sum P(2) = 5.3e-22
Identities = 39/127 (30%), Positives = 68/127 (53%)
Query: 130 GGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKE 189
GG +S + L++G+ IL+A PGRL+D L+ + L + +++ DEAD++L++GF +
Sbjct: 222 GGVPKSGQIYALKQGVHILIACPGRLIDLLEQNVTNL-MRVTYLVLDEADKMLDMGFELQ 280
Query: 190 IEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAK-ISLETPVLIGLDEK 248
I +I+D + RQ L+ SAT ++V LAK + E P+ + +
Sbjct: 281 IRKIVDQI---------------RPDRQTLMWSATWPKEVQALAKDLCKEQPIQVNVGSL 325
Query: 249 KLPEDKS 255
L +S
Sbjct: 326 TLTACRS 332
>TIGR_CMR|CPS_1590 [details] [associations]
symbol:CPS_1590 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_268332.1 ProteinModelPortal:Q485D3
STRING:Q485D3 GeneID:3522084 KEGG:cps:CPS_1590 PATRIC:21466379
OMA:AISECGY ProtClustDB:CLSK768209
BioCyc:CPSY167879:GI48-1671-MONOMER Uniprot:Q485D3
Length = 455
Score = 283 (104.7 bits), Expect = 8.0e-35, Sum P(2) = 8.0e-35
Identities = 85/252 (33%), Positives = 136/252 (53%)
Query: 19 SFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPII 78
S S+GL + L ++ G++ T +Q +AIPVI G +L +A TGTGKT A+ PI+
Sbjct: 2 SVDSIGLSADLLKAVKA-CGYKNLTPIQQEAIPVIRQGVDLLASAQTGTGKTAAFSLPIL 60
Query: 79 ------NHL-QSYSPRIDRSSGTF---------ALVLVPTRELCLQVYEILHKLLHRFHW 122
NH +S + D +S AL+L PTREL QV + + K ++
Sbjct: 61 DAIAKANHAAKSSTTSTDENSAEEKSASGQAIRALILTPTRELANQVADNI-KQFSQYLP 119
Query: 123 IVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRIL 182
I G V GG + + L++G+ +LVATPGRLL+HL + L + +++++ DEADR+L
Sbjct: 120 IKSGVVYGGGKMASQTKMLKQGLDVLVATPGRLLEHLALRNVDL-SQVKFLVLDEADRML 178
Query: 183 ELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVL 242
++GF +IE++L L ++ K Q L+ SAT +++V LA L++P
Sbjct: 179 DMGFLTDIEKLL--LAVKH-------------KHQTLMFSATFSDRVKSLANQLLKSPKT 223
Query: 243 IGLDEKKLPEDK 254
I + ++ K
Sbjct: 224 ISVSKENTTSGK 235
Score = 156 (60.0 bits), Expect = 8.0e-35, Sum P(2) = 8.0e-35
Identities = 31/87 (35%), Positives = 50/87 (57%)
Query: 367 HGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRVGR 426
HG+ Q R F K +L++TDVAARGLD P + ++ + +YVHRVGR
Sbjct: 292 HGDKTQGARNKALEQFSEGKVRVLVATDVAARGLDIPDLAFVVNFHLPFLPEDYVHRVGR 351
Query: 427 TARLGERGDSLLFLQPVEMDYLQDLEK 453
T R G+ G ++ + P + +L+++E+
Sbjct: 352 TGRAGKSGTAISLVSPKDERFLENIEQ 378
>TIGR_CMR|CPS_4097 [details] [associations]
symbol:CPS_4097 "ATP-dependent RNA helicase SrmB"
species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0008186
"RNA-dependent ATPase activity" evidence=ISS] [GO:0042254 "ribosome
biogenesis" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:CP000083 GenomeReviews:CP000083_GR InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807 KO:K05590
ProtClustDB:PRK11192 RefSeq:YP_270752.2 ProteinModelPortal:Q47WS0
STRING:Q47WS0 PRIDE:Q47WS0 GeneID:3520098 KEGG:cps:CPS_4097
PATRIC:21471063 OMA:YLDKGHF BioCyc:CPSY167879:GI48-4110-MONOMER
Uniprot:Q47WS0
Length = 430
Score = 277 (102.6 bits), Expect = 8.5e-35, Sum P(2) = 8.5e-35
Identities = 70/185 (37%), Positives = 99/185 (53%)
Query: 10 TVKEIFASCSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGK 69
T+ E+ S F L S L + ++G+ PT +Q IP + G+ VL +A TGTGK
Sbjct: 7 TLSEL--SLMFEQFDLDSELLASIN-KIGYTKPTSIQELVIPQAMVGKDVLASAPTGTGK 63
Query: 70 TVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVM 129
T A+L PI HL Y PR + L+L PTREL +Q+ E +L I G +
Sbjct: 64 TAAFLLPIAQHLLDY-PRT-KPGFPRVLILTPTRELAIQIGEDSEQLTELTK-IKTGVIT 120
Query: 130 GGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKE 189
GG N L ILVATPGRLL+++++ F + ++ DEADR+L+LGF +
Sbjct: 121 GGVNYGSHADILTSTTDILVATPGRLLEYIEN-EQFDAREIEILVLDEADRMLDLGFSET 179
Query: 190 IEEIL 194
I I+
Sbjct: 180 INRIV 184
Score = 160 (61.4 bits), Expect = 8.5e-35, Sum P(2) = 8.5e-35
Identities = 30/89 (33%), Positives = 52/89 (58%)
Query: 366 LHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRVG 425
L G M Q+ R FK + +L++TDVAARGLD + +I +D + Y+HR+G
Sbjct: 287 LEGKMPQDKRNKAIERFKKGEVKVLVATDVAARGLDIDDISHVINFDMPRKVDIYIHRIG 346
Query: 426 RTARLGERGDSLLFLQPVEMDYLQDLEKH 454
RT R G++G ++ ++ +M + +E++
Sbjct: 347 RTGRAGKKGTAISLVEAHDMGVIGKIERY 375
Score = 47 (21.6 bits), Expect = 5.5e-09, Sum P(2) = 5.5e-09
Identities = 15/58 (25%), Positives = 28/58 (48%)
Query: 262 LESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYV--KVPCGS--RLAVLLSILKHLFD 315
L+S++ + T ++ ++ +P +V + V P G+ A LL I +HL D
Sbjct: 20 LDSELLASINKIGYTKPTSIQELVIPQAMVGKDVLASAPTGTGKTAAFLLPIAQHLLD 77
>FB|FBgn0003261 [details] [associations]
symbol:Rm62 "Rm62" species:7227 "Drosophila melanogaster"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS;NAS]
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0005515 "protein
binding" evidence=IPI] [GO:0016246 "RNA interference" evidence=IMP]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0000381 "regulation of alternative mRNA
splicing, via spliceosome" evidence=IMP] [GO:0005634 "nucleus"
evidence=IC;IDA] [GO:0019730 "antimicrobial humoral response"
evidence=IMP] [GO:0005703 "polytene chromosome puff" evidence=IDA]
[GO:0005875 "microtubule associated complex" evidence=IDA]
[GO:0071011 "precatalytic spliceosome" evidence=IDA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC] [GO:0005700 "polytene
chromosome" evidence=IDA] [GO:0022008 "neurogenesis" evidence=IMP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 EMBL:AE014297 GO:GO:0005524 GO:GO:0005875
GO:GO:0006417 GO:GO:0016246 GO:GO:0022008 GO:GO:0003729
GO:GO:0019730 GO:GO:0071011 GO:GO:0000398 GO:GO:0071013
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GO:GO:0005703 GO:GO:0000381 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K12823 GeneTree:ENSGT00660000095174 EMBL:X52846
EMBL:BT001716 EMBL:BT011476 EMBL:BT015209 PIR:S11485
RefSeq:NP_001163528.1 RefSeq:NP_001189182.1 RefSeq:NP_524243.2
RefSeq:NP_731031.1 RefSeq:NP_731032.1 RefSeq:NP_731033.1
RefSeq:NP_731034.1 RefSeq:NP_731035.2 UniGene:Dm.1520
ProteinModelPortal:P19109 SMR:P19109 DIP:DIP-17867N IntAct:P19109
MINT:MINT-301207 STRING:P19109 PaxDb:P19109 PRIDE:P19109
EnsemblMetazoa:FBtr0078652 GeneID:40739 KEGG:dme:Dmel_CG10279
CTD:40739 FlyBase:FBgn0003261 InParanoid:P19109 OMA:HISNQPR
OrthoDB:EOG4QBZMP PhylomeDB:P19109 GenomeRNAi:40739 NextBio:820339
Bgee:P19109 GermOnline:CG10279 Uniprot:P19109
Length = 719
Score = 289 (106.8 bits), Expect = 1.0e-34, Sum P(2) = 1.0e-34
Identities = 64/175 (36%), Positives = 104/175 (59%)
Query: 20 FSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIIN 79
FS + L + ++R R G++APT +QAQ P+ +SG + + A TG+GKT+ Y+ P I
Sbjct: 283 FSEVHLPDYVMKEIR-RQGYKAPTAIQAQGWPIAMSGSNFVGIAKTGSGKTLGYILPAIV 341
Query: 80 HLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKA 139
H+ + P + R G ALVL PTREL Q+ ++ + ++ V GG + +
Sbjct: 342 HINNQQP-LQRGDGPIALVLAPTRELAQQIQQVATEF-GSSSYVRNTCVFGGAPKGGQMR 399
Query: 140 RLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEIL 194
L++G I++ATPGRL+D L S+ L +++ DEADR+L++GF +I +I+
Sbjct: 400 DLQRGCEIVIATPGRLIDFLSAGSTNLK-RCTYLVLDEADRMLDMGFEPQIRKIV 453
Score = 161 (61.7 bits), Expect = 1.0e-34, Sum P(2) = 1.0e-34
Identities = 31/86 (36%), Positives = 50/86 (58%)
Query: 354 LKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDS 413
++ +RC +HG+ Q +R F++ K +L++TDVAARGLD +K +I +D
Sbjct: 550 IRSFGVRCGA--IHGDKSQSERDFVLREFRSGKSNILVATDVAARGLDVDGIKYVINFDY 607
Query: 414 AGEATEYVHRVGRTARLGERGDSLLF 439
+ +Y+HR+GRT R +G S F
Sbjct: 608 PQNSEDYIHRIGRTGRSNTKGTSFAF 633
Score = 127 (49.8 bits), Expect = 1.2e-16, Sum P(2) = 1.2e-16
Identities = 40/125 (32%), Positives = 65/125 (52%)
Query: 128 VMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFG 187
V GG + + L++G I++ATPGRL+D L S+ L +++ DEADR+L++GF
Sbjct: 388 VFGGAPKGGQMRDLQRGCEIVIATPGRLIDFLSAGSTNLK-RCTYLVLDEADRMLDMGFE 446
Query: 188 KEIEEILDILGSRNIGSIGEGNEVSNVK--RQNLLLSATLNEKVNHLAKISLETPVLIGL 245
+I +I VS ++ RQ L+ SAT ++V LA+ L + I +
Sbjct: 447 PQIRKI-----------------VSQIRPDRQTLMWSATWPKEVKQLAEDFLGNYIQINI 489
Query: 246 DEKKL 250
+L
Sbjct: 490 GSLEL 494
>UNIPROTKB|Q8TDD1 [details] [associations]
symbol:DDX54 "ATP-dependent RNA helicase DDX54"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=IDA] [GO:0003714
"transcription corepressor activity" evidence=IDA] [GO:0005102
"receptor binding" evidence=IDA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0006396
"RNA processing" evidence=IDA] [GO:0016070 "RNA metabolic process"
evidence=IDA] [GO:0030331 "estrogen receptor binding" evidence=IDA]
[GO:0030520 "intracellular estrogen receptor signaling pathway"
evidence=TAS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012541 Pfam:PF00270 Pfam:PF00271
Pfam:PF08147 ProDom:PD024971 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003714 GO:GO:0005730
GO:GO:0006355 GO:GO:0006351 GO:GO:0003723 GO:GO:0006396
GO:GO:0030331 GO:GO:0030520 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K14808 HOGENOM:HOG000246455 OMA:FYIPYRP
EMBL:AF478457 EMBL:AC089999 EMBL:AY148094 EMBL:BC005848
IPI:IPI00152510 IPI:IPI00879999 RefSeq:NP_001104792.1
RefSeq:NP_076977.3 UniGene:Hs.506861 ProteinModelPortal:Q8TDD1
SMR:Q8TDD1 IntAct:Q8TDD1 STRING:Q8TDD1 PhosphoSite:Q8TDD1
DMDM:46576615 SWISS-2DPAGE:Q8TDD1 PaxDb:Q8TDD1 PRIDE:Q8TDD1
DNASU:79039 Ensembl:ENST00000306014 Ensembl:ENST00000314045
GeneID:79039 KEGG:hsa:79039 UCSC:uc001tup.3 UCSC:uc001tuq.4
CTD:79039 GeneCards:GC12M113595 HGNC:HGNC:20084 HPA:HPA028244
MIM:611665 neXtProt:NX_Q8TDD1 PharmGKB:PA134992026
HOVERGEN:HBG051333 InParanoid:Q8TDD1 ChiTaRS:DDX54 GenomeRNAi:79039
NextBio:67773 ArrayExpress:Q8TDD1 Bgee:Q8TDD1 CleanEx:HS_DDX54
Genevestigator:Q8TDD1 GermOnline:ENSG00000123064 Uniprot:Q8TDD1
Length = 881
Score = 299 (110.3 bits), Expect = 1.0e-34, Sum P(3) = 1.0e-34
Identities = 68/194 (35%), Positives = 116/194 (59%)
Query: 1 MIKMSKKKETVKEIFASCSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVL 60
M++ KK+ K+ S F S+GL + + ++ G++ PT +Q + IPVIL G+ V+
Sbjct: 84 MVRAQNKKK--KK---SGGFQSMGLSYPVFKGIMKK-GYKVPTPIQRKTIPVILDGKDVV 137
Query: 61 VNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRF 120
A TG+GKT +L P+ L+++S + +G AL+L PTREL LQ + K L +F
Sbjct: 138 AMARTGSGKTACFLLPMFERLKTHSAQ----TGARALILSPTRELALQTLKFT-KELGKF 192
Query: 121 HWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADR 180
+ ++GG+ + A L + I++ATPGRL+ H+ S ++ +++FDEADR
Sbjct: 193 TGLKTALILGGDRMEDQFAALHENPDIIIATPGRLV-HVAVEMSLKLQSVEYVVFDEADR 251
Query: 181 ILELGFGKEIEEIL 194
+ E+GF ++++EI+
Sbjct: 252 LFEMGFAEQLQEII 265
Score = 166 (63.5 bits), Expect = 3.7e-19, Sum P(2) = 3.7e-19
Identities = 50/157 (31%), Positives = 80/157 (50%)
Query: 115 KLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWII 174
K L +F + ++GG+ + A L + I++ATPGRL+ H+ S ++ +++
Sbjct: 187 KELGKFTGLKTALILGGDRMEDQFAALHENPDIIIATPGRLV-HVAVEMSLKLQSVEYVV 245
Query: 175 FDEADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAK 234
FDEADR+ E+GF ++++EI+ +R G Q +L SATL + + A+
Sbjct: 246 FDEADRLFEMGFAEQLQEII----ARLPGG-----------HQTVLFSATLPKLLVEFAR 290
Query: 235 ISLETPVLIGLD-EKKLPEDKSHVRFGSLESDVKEEV 270
L PVLI LD + KL E F + D K V
Sbjct: 291 AGLTEPVLIRLDVDTKLNEQLK-TSFFLVREDTKAAV 326
Score = 148 (57.2 bits), Expect = 1.0e-34, Sum P(3) = 1.0e-34
Identities = 44/128 (34%), Positives = 63/128 (49%)
Query: 375 RRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRVGRTARLGERG 434
R+ F K + L+ TD+AARGLD P + +I Y + ++HRVGR AR G G
Sbjct: 377 RKINLAKFTLGKCSTLIVTDLAARGLDIPLLDNVINYSFPAKGKLFLHRVGRVARAGRSG 436
Query: 435 DSLLFLQPVEMDYLQDLEKH-GVSLT-EYPLLKVLDSFPLYGQKPRVKKFLTTESHPWIL 492
+ + P E+ YL DL G SLT PL + + G RV + + E +
Sbjct: 437 TAYSLVAPDEIPYLLDLHLFLGRSLTLARPLKEPSGVAGVDGMLGRVPQSVVDEEDSGLQ 496
Query: 493 S-LQNALE 499
S L+ +LE
Sbjct: 497 STLEASLE 504
Score = 45 (20.9 bits), Expect = 1.0e-34, Sum P(3) = 1.0e-34
Identities = 17/58 (29%), Positives = 29/58 (50%)
Query: 283 DFKLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLS 340
D KL QL + V ++ AVLL +L ++ + + VVF +T ++ LL+
Sbjct: 304 DTKLNEQLKTSFFLVREDTKAAVLLHLLHNVVRPQ--DQTVVFVATKHHAEYLTELLT 359
>UNIPROTKB|A5A6J2 [details] [associations]
symbol:DDX5 "Probable ATP-dependent RNA helicase DDX5"
species:9598 "Pan troglodytes" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=ISS] [GO:0003713 "transcription coactivator
activity" evidence=ISS] [GO:0003724 "RNA helicase activity"
evidence=ISS] [GO:0005730 "nucleolus" evidence=ISS] [GO:0030331
"estrogen receptor binding" evidence=ISS] [GO:0043517 "positive
regulation of DNA damage response, signal transduction by p53 class
mediator" evidence=ISS] [GO:0045667 "regulation of osteoblast
differentiation" evidence=ISS] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0050681 "androgen receptor binding" evidence=ISS] [GO:0060765
"regulation of androgen receptor signaling pathway" evidence=ISS]
[GO:0072332 "intrinsic apoptotic signaling pathway by p53 class
mediator" evidence=ISS] [GO:2001014 "regulation of skeletal muscle
cell differentiation" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012587
Pfam:PF00270 Pfam:PF00271 Pfam:PF08061 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0008380 GO:GO:0006397 GO:GO:0045944 GO:GO:0006351
GO:GO:0005681 GO:GO:0003723 GO:GO:0000122 GO:GO:0003713
GO:GO:0050681 GO:GO:0043517 GO:GO:0030331 GO:GO:0060765
GO:GO:0045667 GO:GO:0072332 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0000381 eggNOG:COG0513
GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268804 KO:K12823 HOVERGEN:HBG015893 GO:GO:2001014
CTD:1655 OrthoDB:EOG4BVRTM EMBL:AB222120 RefSeq:NP_001138306.1
UniGene:Ptr.274 ProteinModelPortal:A5A6J2 PRIDE:A5A6J2
GeneID:455267 KEGG:ptr:455267 InParanoid:A5A6J2 NextBio:20836697
Uniprot:A5A6J2
Length = 614
Score = 270 (100.1 bits), Expect = 1.4e-34, Sum P(2) = 1.4e-34
Identities = 63/163 (38%), Positives = 95/163 (58%)
Query: 36 RLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTF 95
R F PT +QAQ PV LSG ++ A TG+GKT++YL P I H+ ++ P ++R G
Sbjct: 111 RQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHI-NHQPFLERGDGPI 169
Query: 96 ALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRL 155
LVL PTREL QV ++ + + + GG + + L +G+ +ATPGRL
Sbjct: 170 CLVLAPTRELAQQVQQVAAEYCRACR-LKSTCIYGGAPKGPQIRDLERGVENCIATPGRL 228
Query: 156 LDHLKHTSSFLHTNLR---WIIFDEADRILELGFGKEIEEILD 195
+D L+ TNLR +++ DEADR+L++GF +I +I+D
Sbjct: 229 IDFLECGK----TNLRRTTYLVLDEADRMLDMGFEPQIRKIVD 267
Score = 178 (67.7 bits), Expect = 1.4e-34, Sum P(2) = 1.4e-34
Identities = 34/86 (39%), Positives = 51/86 (59%)
Query: 366 LHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRVG 425
+HG+ Q++R FK K +L++TDVA+RGLD VK +I YD + +Y+HR+G
Sbjct: 371 IHGDKSQQERDWVLNEFKHGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIG 430
Query: 426 RTARLGERGDSLLFLQPVEMDYLQDL 451
RTAR + G + F P + + DL
Sbjct: 431 RTARSTKTGTAYTFFTPNNIKQVSDL 456
Score = 126 (49.4 bits), Expect = 1.2e-18, Sum P(2) = 1.2e-18
Identities = 41/145 (28%), Positives = 75/145 (51%)
Query: 128 VMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLR---WIIFDEADRILEL 184
+ GG + + L +G+ +ATPGRL+D L+ TNLR +++ DEADR+L++
Sbjct: 201 IYGGAPKGPQIRDLERGVENCIATPGRLIDFLECGK----TNLRRTTYLVLDEADRMLDM 256
Query: 185 GFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIG 244
GF +I +I+D + RQ L+ SAT ++V LA+ L+ + I
Sbjct: 257 GFEPQIRKIVDQI---------------RPDRQTLMWSATWPKEVRQLAEDFLKDYIHIN 301
Query: 245 LDEKKLPEDKSHVRFGSLESDVKEE 269
+ +L + + ++ + DV+++
Sbjct: 302 IGALELSANHNILQIVDVCHDVEKD 326
>UNIPROTKB|Q5L3G9 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:235909 "Geobacillus kaustophilus HTA426" [GO:0003723 "RNA
binding" evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS]
[GO:0043590 "bacterial nucleoid" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0043590 HOGENOM:HOG000268810 KO:K05592
OMA:IIDHINR HSSP:Q58083 EMBL:BA000043 RefSeq:YP_146079.1
ProteinModelPortal:Q5L3G9 GeneID:3184893 GenomeReviews:BA000043_GR
KEGG:gka:GK0226 PATRIC:21961545 ProtClustDB:CLSK712472
BioCyc:GKAU235909:GJO7-260-MONOMER Uniprot:Q5L3G9
Length = 467
Score = 274 (101.5 bits), Expect = 1.7e-34, Sum P(2) = 1.7e-34
Identities = 66/178 (37%), Positives = 106/178 (59%)
Query: 19 SFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPII 78
+F LGL + + ER+GFE T +QA+ IP+ L + V+ A TGTGKT A+ PI+
Sbjct: 3 TFQELGLSQEVMKAI-ERMGFEETTPIQAKTIPLSLQNKDVIGQAQTGTGKTAAFGIPIV 61
Query: 79 NHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKL--LHRFHWIVPGYVMGGENRSK 136
+ ++S ALV+ PTREL +QV E L+K+ + R ++P Y GG++ +
Sbjct: 62 EKVNV------KNSAVQALVVAPTRELAIQVSEELYKIGAVKRVR-VLPIY--GGQDIER 112
Query: 137 EKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEIL 194
+ L+K ++V TPGR++DH+ + L ++ ++ DEAD +L +GF ++IE IL
Sbjct: 113 QIRALKKHPHVIVGTPGRIIDHINRGTLRLE-HVHTVVLDEADEMLNMGFIEDIEAIL 169
Score = 165 (63.1 bits), Expect = 1.7e-34, Sum P(2) = 1.7e-34
Identities = 33/88 (37%), Positives = 51/88 (57%)
Query: 366 LHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRVG 425
+HG++ Q R + FK +L++TDVAARGLD V + +D + YVHR+G
Sbjct: 270 IHGDLSQAKRLSVLRKFKEGAIEILVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIG 329
Query: 426 RTARLGERGDSLLFLQPVEMDYLQDLEK 453
RT R G+ G ++ F+ P E+ L +E+
Sbjct: 330 RTGRAGKTGVAMTFVTPREIGQLHHIER 357
Score = 136 (52.9 bits), Expect = 1.2e-18, Sum P(2) = 1.2e-18
Identities = 34/123 (27%), Positives = 67/123 (54%)
Query: 128 VMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFG 187
+ GG++ ++ L+K ++V TPGR++DH+ + L ++ ++ DEAD +L +GF
Sbjct: 104 IYGGQDIERQIRALKKHPHVIVGTPGRIIDHINRGTLRLE-HVHTVVLDEADEMLNMGFI 162
Query: 188 KEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDE 247
++IE IL + + +RQ LL SAT+ + + +A+ + P L+ +
Sbjct: 163 EDIEAILSHVPA---------------ERQTLLFSATMPDPIRRIAERFMNEPELVKVKA 207
Query: 248 KKL 250
K++
Sbjct: 208 KEM 210
Score = 38 (18.4 bits), Expect = 1.7e-08, Sum P(2) = 1.7e-08
Identities = 29/162 (17%), Positives = 64/162 (39%)
Query: 180 RILELGFGKEIEEILDILGSRNIGSIGE-GNEVSNVKRQNLLLS---ATLNEKVNHLAKI 235
R+L + G++IE + L +G G + ++ R L L + ++ + + +
Sbjct: 100 RVLPIYGGQDIERQIRALKKHPHVIVGTPGRIIDHINRGTLRLEHVHTVVLDEADEMLNM 159
Query: 236 SLETPVLIGLDEKKLPEDKSHVRFGSLESD----VKEEVEHPSTTMRSTTEDFKLPAQLV 291
+ L +P ++ + F + D + E + ++ ++ +P +
Sbjct: 160 GFIEDIEAILSH--VPAERQTLLFSATMPDPIRRIAERFMNEPELVKVKAKEMTVP-NIQ 216
Query: 292 QRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVD 333
Q Y++V + IL L D + + +VF T VD
Sbjct: 217 QYYLEVHEKKKF----DILTRLLDIQAPELAIVFGRTKRRVD 254
>TIGR_CMR|DET_0183 [details] [associations]
symbol:DET_0183 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:243164 "Dehalococcoides ethenogenes 195"
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
[GO:0008152 "metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000027 GenomeReviews:CP000027_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_180931.1 ProteinModelPortal:Q3ZA18
STRING:Q3ZA18 GeneID:3230538 KEGG:det:DET0183 PATRIC:21607443
OMA:NFAPAVM ProtClustDB:CLSK837629
BioCyc:DETH243164:GJNF-183-MONOMER Uniprot:Q3ZA18
Length = 560
Score = 284 (105.0 bits), Expect = 1.8e-34, Sum P(2) = 1.8e-34
Identities = 72/179 (40%), Positives = 98/179 (54%)
Query: 19 SFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPII 78
SF S + +R G++ PT +QAQAIP IL G V+ A TGTGKT AY P+I
Sbjct: 2 SFESFNFAPAVMAGVRA-CGYQEPTPIQAQAIPPILEGHDVIGLAQTGTGKTAAYALPVI 60
Query: 79 NHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEK 138
+ S +PR LVL PTREL Q+ E L R I + GG N ++
Sbjct: 61 QKMLS-TPR----GRVRTLVLAPTRELACQIAESFRSLGQRAR-IRECSIYGGVNMDQQI 114
Query: 139 ARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDIL 197
RLR G+ ++VA PGRLLDH+ + + + +I DEADR+ ++GF +I+ IL L
Sbjct: 115 RRLRSGVDVVVACPGRLLDHIWRGTIDI-CGVETLIIDEADRMFDMGFQPDIQSILKCL 172
Score = 159 (61.0 bits), Expect = 1.8e-34, Sum P(2) = 1.8e-34
Identities = 31/91 (34%), Positives = 48/91 (52%)
Query: 363 TFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVH 422
T L GN+ Q R F+ +L++TD+AARGLD + +I YD +Y H
Sbjct: 266 TASLQGNLSQNRRHAVMEGFRRGNFKILVATDIAARGLDIDHISHVINYDMPDTPEDYTH 325
Query: 423 RVGRTARLGERGDSLLFLQPVEMDYLQDLEK 453
R+GRT R G +L + + D ++D++K
Sbjct: 326 RIGRTGRFDRTGQALSLVTGRDGDMVRDIQK 356
Score = 141 (54.7 bits), Expect = 3.2e-18, Sum P(2) = 3.2e-18
Identities = 41/129 (31%), Positives = 63/129 (48%)
Query: 128 VMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFG 187
+ GG N ++ RLR G+ ++VA PGRLLDH+ + + + +I DEADR+ ++GF
Sbjct: 104 IYGGVNMDQQIRRLRSGVDVVVACPGRLLDHIWRGTIDI-CGVETLIIDEADRMFDMGFQ 162
Query: 188 KEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDE 247
+I+ IL L + Q LL SAT+ +V L + PV I +
Sbjct: 163 PDIQSILKCLVQPH---------------QTLLFSATMPPEVRKLTLETQTNPVTIQIGT 207
Query: 248 KKLPEDKSH 256
+ SH
Sbjct: 208 QAPASSVSH 216
>UNIPROTKB|I3LNN1 [details] [associations]
symbol:DDX23 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0005886 "plasma membrane" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IEA] [GO:0005682 "U5 snRNP" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005739 GO:GO:0005886
GO:GO:0005524 GO:GO:0005682 GO:GO:0003676 GO:GO:0071013
GeneTree:ENSGT00690000102171 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
OMA:PIRNWKE Ensembl:ENSSSCT00000027880 Uniprot:I3LNN1
Length = 801
Score = 284 (105.0 bits), Expect = 1.8e-34, Sum P(2) = 1.8e-34
Identities = 63/165 (38%), Positives = 103/165 (62%)
Query: 35 ERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDR---- 90
++ G++ PT +Q QAIP+ L R ++ A TG+GKT A+L P++ + + P+IDR
Sbjct: 407 DKCGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLVWITTL-PKIDRIEES 465
Query: 91 SSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVA 150
G +A++L PTREL Q+ E K I P V+GG +R + RLR G I++A
Sbjct: 466 DQGPYAIILAPTRELAQQIEEETIKFGKPLG-IRPVAVIGGISREDQGFRLRMGCEIVIA 524
Query: 151 TPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILD 195
TPGRL+D L++ L + +++ DEADR++++GF ++++IL+
Sbjct: 525 TPGRLIDVLENRYLVL-SRCTYVVLDEADRMIDMGFEPDVQKILE 568
Score = 166 (63.5 bits), Expect = 1.8e-34, Sum P(2) = 1.8e-34
Identities = 32/88 (36%), Positives = 48/88 (54%)
Query: 366 LHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRVG 425
LHG QE R K K +L++TDVA RG+D V ++ YD A +Y+HR+G
Sbjct: 675 LHGGKGQEQREFALSNLKAGAKDILVATDVAGRGIDIQDVSMVVNYDMAKNIEDYIHRIG 734
Query: 426 RTARLGERGDSLLFLQPVEMDYLQDLEK 453
RT R G+ G ++ FL + +L++
Sbjct: 735 RTGRAGKSGVAITFLTKEDSAVFYELKQ 762
Score = 37 (18.1 bits), Expect = 9.2e-08, Sum P(2) = 9.2e-08
Identities = 7/12 (58%), Positives = 10/12 (83%)
Query: 132 ENRSKEKARLRK 143
E + +E+ARLRK
Sbjct: 331 EEKEQEEARLRK 342
>UNIPROTKB|F1S0I6 [details] [associations]
symbol:DDX43 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005622 "intracellular" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR011545 Pfam:PF00013 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS50084 PROSITE:PS51194
SMART:SM00322 SMART:SM00490 GO:GO:0005524 GO:GO:0003723
GO:GO:0005622 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 OMA:VLDITHV EMBL:CU468562
EMBL:AEMK01095428 EMBL:AEMK01188208 EMBL:FP312832
Ensembl:ENSSSCT00000004740 Uniprot:F1S0I6
Length = 650
Score = 261 (96.9 bits), Expect = 1.8e-34, Sum P(2) = 1.8e-34
Identities = 75/212 (35%), Positives = 117/212 (55%)
Query: 35 ERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSP--RIDRS- 91
++ GF+ PT +Q+QA P+IL G ++ A TGTGKT++YL P H+ S + R+
Sbjct: 257 KKAGFQKPTPIQSQAWPIILQGIDLIGVAQTGTGKTLSYLMPGFIHVDSQPVVFSLQRAR 316
Query: 92 SGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVAT 151
+G LVL PTREL LQV K + + + V GG +R + L KG+ I++AT
Sbjct: 317 NGPGMLVLTPTRELALQVEAECSK--YSYKGLKSVCVYGGGDRDGQIKDLLKGVDIIIAT 374
Query: 152 PGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILGSRNIGSIGEGNEV 211
PGRL D + +L + + +++ DEAD++L++GF +I +IL L R
Sbjct: 375 PGRLNDLQMNNFVYLKS-ISYLVLDEADKMLDMGFEPQIMKIL--LDIRP---------- 421
Query: 212 SNVKRQNLLLSATLNEKVNHLAKISLETPVLI 243
RQ ++ SAT V LA+ L+ P+++
Sbjct: 422 ---DRQTVMTSATWPYAVRRLAQSYLKEPMIV 450
Score = 188 (71.2 bits), Expect = 1.8e-34, Sum P(2) = 1.8e-34
Identities = 63/221 (28%), Positives = 103/221 (46%)
Query: 275 TTMRSTTEDFKLPAQLVQRYVKVPC----GSRLAVLLSILKH--LFDTEVSQK--LVVFF 326
T M S T + + +L Q Y+K P G+ V +S +K + TE ++ + F
Sbjct: 425 TVMTSATWPYAV-RRLAQSYLKEPMIVYVGTLDLVAVSTVKQNIIVTTEDEKRSHIQTFI 483
Query: 327 STCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEK 386
+ D +S + H D+ ++ + + LHGN +Q DR FKT K
Sbjct: 484 ESMSPKDKVIIFVSRKAVADHLSSDLGIRHISVES----LHGNREQGDRERALKNFKTGK 539
Query: 387 KALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRVGRTARLGERGDSLLFLQ----P 442
+L++TD+A+RGLD V + YD EYVHRVGRT R G G S+ +
Sbjct: 540 VRILIATDLASRGLDVHDVTHVYNYDFPRNIEEYVHRVGRTGRAGRTGVSITLITRSDWK 599
Query: 443 VEMDYLQDLEKHGVSLTEYPLLKVLDSFPLYGQKPRVKKFL 483
+ + + LE+ S+ E L+++ + + K ++K L
Sbjct: 600 IAGELIHILERANQSIPE-DLVEMAERYKANKLKKEMEKKL 639
>WB|WBGene00010260 [details] [associations]
symbol:F58E10.3 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040010 "positive regulation of
growth rate" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0009792 GO:GO:0040007
GO:GO:0040010 GO:GO:0002119 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823
GeneTree:ENSGT00660000095174 HSSP:P10081 EMBL:Z81555 PIR:T22917
RefSeq:NP_001041134.1 ProteinModelPortal:Q9XUW5 SMR:Q9XUW5
STRING:Q9XUW5 PaxDb:Q9XUW5 PRIDE:Q9XUW5 EnsemblMetazoa:F58E10.3a.1
EnsemblMetazoa:F58E10.3a.2 EnsemblMetazoa:F58E10.3a.3
EnsemblMetazoa:F58E10.3a.4 EnsemblMetazoa:F58E10.3a.5 GeneID:179897
KEGG:cel:CELE_F58E10.3 UCSC:F58E10.3a.1 CTD:179897
WormBase:F58E10.3a InParanoid:Q9XUW5 OMA:YVLQEIT NextBio:907314
ArrayExpress:Q9XUW5 Uniprot:Q9XUW5
Length = 561
Score = 272 (100.8 bits), Expect = 2.1e-34, Sum P(2) = 2.1e-34
Identities = 61/165 (36%), Positives = 101/165 (61%)
Query: 32 QLRERL-G-FEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRID 89
Q+ E L G F+ PT +Q+ + P+ +SGR ++ A TG+GKT+A++ P + H+ + R
Sbjct: 140 QIHELLYGKFQKPTVIQSISWPIAMSGRDIISIAKTGSGKTLAFMLPALVHITKQAHR-Q 198
Query: 90 RSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILV 149
R G LVL+PTREL QV E+ H + + GG ++ + L +G+ I+V
Sbjct: 199 RGEGPAVLVLLPTRELAQQVQEVSIDFCHSLG-LKMTCLFGGASKGPQARDLERGVDIVV 257
Query: 150 ATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEIL 194
ATPGRLLD L + ++ + +++ DEADR+L++GF +I++I+
Sbjct: 258 ATPGRLLDFLDNGTTNMK-KCSYLVLDEADRMLDMGFEPQIKKII 301
Score = 172 (65.6 bits), Expect = 2.1e-34, Sum P(2) = 2.1e-34
Identities = 35/91 (38%), Positives = 50/91 (54%)
Query: 363 TFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVH 422
T +HG+ Q +R FK K ++L+TDVAARGLD +K +I YD + +YVH
Sbjct: 403 TLCIHGDKNQGERDWVLQEFKAGKTPIMLATDVAARGLDVDDIKFVINYDYPNNSEDYVH 462
Query: 423 RVGRTARLGERGDSLLFLQPVEMDYLQDLEK 453
R+GRT R ++G + F +DL K
Sbjct: 463 RIGRTGRSDKKGTAYTFFTHTNASKAKDLLK 493
Score = 134 (52.2 bits), Expect = 6.1e-19, Sum P(2) = 6.1e-19
Identities = 37/106 (34%), Positives = 60/106 (56%)
Query: 128 VMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFG 187
+ GG ++ + L +G+ I+VATPGRLLD L + ++ + +++ DEADR+L++GF
Sbjct: 236 LFGGASKGPQARDLERGVDIVVATPGRLLDFLDNGTTNMK-KCSYLVLDEADRMLDMGFE 294
Query: 188 KEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLA 233
+I++I IG I RQ L+ SAT ++V LA
Sbjct: 295 PQIKKI--------IGQI-------RPDRQTLMFSATWPKEVRALA 325
>SGD|S000000441 [details] [associations]
symbol:PRP5 "RNA helicase in the DEAD-box family"
species:4932 "Saccharomyces cerevisiae" [GO:0005634 "nucleus"
evidence=IEA;IDA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0000348 "mRNA branch
site recognition" evidence=TAS] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0008186 "RNA-dependent ATPase activity"
evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 SGD:S000000441 GO:GO:0005524
GO:GO:0005681 EMBL:BK006936 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0008186
GeneTree:ENSGT00610000086076 KO:K12811 HOGENOM:HOG000007229
GO:GO:0000348 OMA:SLVIIYN OrthoDB:EOG40CMR1 EMBL:M33191 EMBL:Z36106
EMBL:AY692817 PIR:A35791 RefSeq:NP_009796.1
ProteinModelPortal:P21372 SMR:P21372 DIP:DIP-88N IntAct:P21372
MINT:MINT-403988 STRING:P21372 PaxDb:P21372 EnsemblFungi:YBR237W
GeneID:852539 KEGG:sce:YBR237W CYGD:YBR237w NextBio:971604
Genevestigator:P21372 GermOnline:YBR237W Uniprot:P21372
Length = 849
Score = 308 (113.5 bits), Expect = 2.2e-34, Sum P(2) = 2.2e-34
Identities = 78/248 (31%), Positives = 129/248 (52%)
Query: 20 FSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIIN 79
+S LGL + + E+L F + T +Q+QA+P I+SGR V+ + TG+GKT++YL P++
Sbjct: 257 WSQLGLSTDTMVLITEKLHFGSLTPIQSQALPAIMSGRDVIGISKTGSGKTISYLLPLLR 316
Query: 80 HLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKA 139
+++ P +G L+L PTREL LQ++E + K I GG K+
Sbjct: 317 QVKAQRPLSKHETGPMGLILAPTRELALQIHEEVTKFTEADTSIRSVCCTGGSEMKKQIT 376
Query: 140 RLRKGISILVATPGRLLDHLK-HTSSFLHTN-LRWIIFDEADRILELGFGKEIEEILDIL 197
L++G I+VATPGR +D L + L T + +++ DEADR+ +LGF +I +I+ +
Sbjct: 377 DLKRGTEIVVATPGRFIDILTLNDGKLLSTKRITFVVMDEADRLFDLGFEPQITQIMKTV 436
Query: 198 GSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLPEDKSHV 257
+Q +L SAT K+ A L +P+ I ++ K + +
Sbjct: 437 ---------------RPDKQCVLFSATFPNKLRSFAVRVLHSPISITINSKGMVNENVKQ 481
Query: 258 RFGSLESD 265
+F S+
Sbjct: 482 KFRICHSE 489
Score = 139 (54.0 bits), Expect = 2.2e-34, Sum P(2) = 2.2e-34
Identities = 31/91 (34%), Positives = 47/91 (51%)
Query: 363 TFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVH 422
T +H ++R FK EK ++LL T+V +RGL+ P+V +I Y++ +YVH
Sbjct: 552 TCAIHAGKPYQERLMNLEKFKREKNSILLCTEVLSRGLNVPEVSLVIIYNAVKTFAQYVH 611
Query: 423 RVGRTARLGERGDSLLFLQPVEMDYLQDLEK 453
GRTAR G ++ L E+ L K
Sbjct: 612 TTGRTARGSRSGTAITLLLHDELSGAYILSK 642
>UNIPROTKB|I3LV06 [details] [associations]
symbol:DDX59 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005622 "intracellular" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0005622 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR007529 Pfam:PF04438 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00610000086076
CTD:83479 OMA:VTRPIID EMBL:FP312674 RefSeq:XP_003357711.1
Ensembl:ENSSSCT00000031167 GeneID:100621580 KEGG:ssc:100621580
Uniprot:I3LV06
Length = 607
Score = 302 (111.4 bits), Expect = 2.4e-34, Sum P(2) = 2.4e-34
Identities = 83/232 (35%), Positives = 125/232 (53%)
Query: 20 FSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIIN 79
F G TL L+ G+E PT +Q Q IPV L GR +L +A TG+GKT A+L P+I
Sbjct: 193 FGHCGFPETLNFNLKTA-GYEVPTPIQMQMIPVGLLGRDLLASADTGSGKTAAFLLPVIT 251
Query: 80 HLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKA 139
+ +S ALVL PTREL +Q+ +L+ + ++GG +
Sbjct: 252 RA------LVQSKAPSALVLTPTRELAIQIERQAKELMGGLPRMRTALLVGGLPAPPQLH 305
Query: 140 RLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILGS 199
RLR+ + +++ATPGRLLD +K +S L N++ ++ DEAD +L++GF E++LD+L
Sbjct: 306 RLRQRVQVIIATPGRLLDIMKQSSVDLG-NIKIVVVDEADTMLKMGFQ---EQVLDVL-- 359
Query: 200 RNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLP 251
N+ Q +L+SAT+ ++ LA L PV + EK LP
Sbjct: 360 ENVPQ----------DCQTILVSATIPTRIEQLASRLLHDPVRVLAGEKNLP 401
Score = 139 (54.0 bits), Expect = 2.4e-34, Sum P(2) = 2.4e-34
Identities = 29/92 (31%), Positives = 45/92 (48%)
Query: 362 KTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYV 421
K+ +H Q +R+T +++ST V RGLD VK ++ +D EYV
Sbjct: 459 KSTSMHSEKSQIERKTILEGLLEGDYDVVVSTGVLGRGLDLISVKLVVNFDMPSSMDEYV 518
Query: 422 HRVGRTARLGERGDSLLFLQPVEMDYLQDLEK 453
H+VGR RLG+ G ++ F+ D+ K
Sbjct: 519 HQVGRVGRLGQNGTAITFINNNSKRLFWDIAK 550
>UNIPROTKB|A4QSS5 [details] [associations]
symbol:DBP2 "ATP-dependent RNA helicase DBP2"
species:242507 "Magnaporthe oryzae 70-15" [GO:0043581 "mycelium
development" evidence=IEP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0000184 EMBL:CM001233 GO:GO:0003723
GO:GO:0043581 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 OrthoDB:EOG47SWP6 RefSeq:XP_003712846.1
ProteinModelPortal:A4QSS5 EnsemblFungi:MGG_16901T0 GeneID:12985738
KEGG:mgr:MGG_16901 Uniprot:A4QSS5
Length = 548
Score = 274 (101.5 bits), Expect = 2.8e-34, Sum P(2) = 2.8e-34
Identities = 62/176 (35%), Positives = 101/176 (57%)
Query: 19 SFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPII 78
+F G + D+++ + GF APT +Q+Q P+ LSGR V+ A TG+GKT+ Y P I
Sbjct: 126 TFDEAGFPRYVMDEVKAQ-GFPAPTAIQSQGWPMALSGRDVVGIAETGSGKTLTYCLPAI 184
Query: 79 NHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEK 138
H+ + P + G L+L PTREL +Q+ + K + I V GG + +
Sbjct: 185 VHINA-QPLLAPGDGPIVLILAPTRELAVQIQAEISKF-GKSSRIRNTCVYGGVPKGPQI 242
Query: 139 ARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEIL 194
L +G+ + +ATPGRL+D L+ + L + +++ DEADR+L++GF +I +I+
Sbjct: 243 RDLSRGVEVCIATPGRLIDMLESGKTNLR-RVTYLVLDEADRMLDMGFEPQIRKII 297
Score = 168 (64.2 bits), Expect = 2.8e-34, Sum P(2) = 2.8e-34
Identities = 29/86 (33%), Positives = 50/86 (58%)
Query: 366 LHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRVG 425
+HG+ +Q +R FKT K ++++TDVA+RG+D + ++ YD + +Y+HR+G
Sbjct: 404 IHGDKQQNERDWVLDQFKTGKSPIMVATDVASRGIDVRNITHVLNYDYPNNSEDYIHRIG 463
Query: 426 RTARLGERGDSLLFLQPVEMDYLQDL 451
RT R G +G ++ F +DL
Sbjct: 464 RTGRAGAKGTAITFFTTENSKQARDL 489
Score = 125 (49.1 bits), Expect = 1.4e-17, Sum P(2) = 1.4e-17
Identities = 36/118 (30%), Positives = 63/118 (53%)
Query: 128 VMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFG 187
V GG + + L +G+ + +ATPGRL+D L+ + L + +++ DEADR+L++GF
Sbjct: 232 VYGGVPKGPQIRDLSRGVEVCIATPGRLIDMLESGKTNLR-RVTYLVLDEADRMLDMGFE 290
Query: 188 KEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGL 245
+I +I IG I RQ L+ SAT ++V ++A L+ + + +
Sbjct: 291 PQIRKI--------IGQI-------RPDRQTLMWSATWPKEVRNMAADFLQDFIQVNI 333
>UNIPROTKB|Q8EHT1 [details] [associations]
symbol:SO_1136 "ATP-dependent RNA helicase DEAD box family"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
RefSeq:NP_716761.1 ProteinModelPortal:Q8EHT1 GeneID:1168967
KEGG:son:SO_1136 PATRIC:23521912 OMA:IGAKENA ProtClustDB:CLSK869861
Uniprot:Q8EHT1
Length = 447
Score = 282 (104.3 bits), Expect = 2.8e-34, Sum P(2) = 2.8e-34
Identities = 89/250 (35%), Positives = 133/250 (53%)
Query: 3 KMSKKKETVKEIFASCSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVN 62
K+S E+ E S +F+ LGL++ L L RL + PT+VQ AIP IL+GR +L
Sbjct: 5 KLSPSPESYPE---SLTFAELGLNAALRKALPTRL--KHPTRVQQLAIPAILAGRDLLAL 59
Query: 63 AATGTGKTVAYLAPIINHL-QSYSPRIDRSS----GTFALVLVPTRELCLQVYEILHKLL 117
+ TG+GKT A+ P++ L Q + + S ALVLVPTREL LQV E LH L
Sbjct: 60 SQTGSGKTFAFGLPLLQILWQQIAVQTTAKSVPAAKPLALVLVPTRELALQVSEALHALA 119
Query: 118 HRFHWIVPGYVM---GGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWII 174
+ P + GG ++ A L ++VATPGRLLD + L ++ ++
Sbjct: 120 SQLSTSAPLNIQLLCGGVALEQQLADLSAKPQLVVATPGRLLDLCTQSHISLDA-IKHLV 178
Query: 175 FDEADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLA- 233
DEADR+LE+GF ++++++ ++ R +Q LL SATL E ++ LA
Sbjct: 179 LDEADRLLEMGFWPDMQKLMAMMPKR---------------KQTLLFSATLPEALDSLAG 223
Query: 234 KISLETPVLI 243
K+ P+ +
Sbjct: 224 KLLTNDPLKV 233
Score = 151 (58.2 bits), Expect = 2.8e-34, Sum P(2) = 2.8e-34
Identities = 47/152 (30%), Positives = 71/152 (46%)
Query: 337 SLLSEFQW-------SPHSQPDMELKQLFLR-CKTFRLHGNMKQEDRRTTFGAFKTEKKA 388
+LL ++QW S D K+L LHG Q R T FK ++
Sbjct: 263 ALLKQYQWPQVLVFISARDDADAIAKRLVKAGINAAALHGEKDQTVRSQTLADFKADRIQ 322
Query: 389 LLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRVGRTARLGERGDSLLFLQPVEMDYL 448
+L++TD+ ARG+ + +I D A YVHR+GRTAR G +G ++ + EM L
Sbjct: 323 VLVATDLMARGIHVDALPVVINLDLPTSAPVYVHRIGRTARAGAKGLAISLVCHGEMPNL 382
Query: 449 QDLEKHGVSLTEYPLLKVLDSFPLYGQKPRVK 480
+ ++ PL+ + D FP+ KP K
Sbjct: 383 TAIRN--LTARALPLVFLAD-FPVT-DKPSEK 410
>TIGR_CMR|SO_1136 [details] [associations]
symbol:SO_1136 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
RefSeq:NP_716761.1 ProteinModelPortal:Q8EHT1 GeneID:1168967
KEGG:son:SO_1136 PATRIC:23521912 OMA:IGAKENA ProtClustDB:CLSK869861
Uniprot:Q8EHT1
Length = 447
Score = 282 (104.3 bits), Expect = 2.8e-34, Sum P(2) = 2.8e-34
Identities = 89/250 (35%), Positives = 133/250 (53%)
Query: 3 KMSKKKETVKEIFASCSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVN 62
K+S E+ E S +F+ LGL++ L L RL + PT+VQ AIP IL+GR +L
Sbjct: 5 KLSPSPESYPE---SLTFAELGLNAALRKALPTRL--KHPTRVQQLAIPAILAGRDLLAL 59
Query: 63 AATGTGKTVAYLAPIINHL-QSYSPRIDRSS----GTFALVLVPTRELCLQVYEILHKLL 117
+ TG+GKT A+ P++ L Q + + S ALVLVPTREL LQV E LH L
Sbjct: 60 SQTGSGKTFAFGLPLLQILWQQIAVQTTAKSVPAAKPLALVLVPTRELALQVSEALHALA 119
Query: 118 HRFHWIVPGYVM---GGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWII 174
+ P + GG ++ A L ++VATPGRLLD + L ++ ++
Sbjct: 120 SQLSTSAPLNIQLLCGGVALEQQLADLSAKPQLVVATPGRLLDLCTQSHISLDA-IKHLV 178
Query: 175 FDEADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLA- 233
DEADR+LE+GF ++++++ ++ R +Q LL SATL E ++ LA
Sbjct: 179 LDEADRLLEMGFWPDMQKLMAMMPKR---------------KQTLLFSATLPEALDSLAG 223
Query: 234 KISLETPVLI 243
K+ P+ +
Sbjct: 224 KLLTNDPLKV 233
Score = 151 (58.2 bits), Expect = 2.8e-34, Sum P(2) = 2.8e-34
Identities = 47/152 (30%), Positives = 71/152 (46%)
Query: 337 SLLSEFQW-------SPHSQPDMELKQLFLR-CKTFRLHGNMKQEDRRTTFGAFKTEKKA 388
+LL ++QW S D K+L LHG Q R T FK ++
Sbjct: 263 ALLKQYQWPQVLVFISARDDADAIAKRLVKAGINAAALHGEKDQTVRSQTLADFKADRIQ 322
Query: 389 LLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRVGRTARLGERGDSLLFLQPVEMDYL 448
+L++TD+ ARG+ + +I D A YVHR+GRTAR G +G ++ + EM L
Sbjct: 323 VLVATDLMARGIHVDALPVVINLDLPTSAPVYVHRIGRTARAGAKGLAISLVCHGEMPNL 382
Query: 449 QDLEKHGVSLTEYPLLKVLDSFPLYGQKPRVK 480
+ ++ PL+ + D FP+ KP K
Sbjct: 383 TAIRN--LTARALPLVFLAD-FPVT-DKPSEK 410
>FB|FBgn0010220 [details] [associations]
symbol:Dbp45A "DEAD box protein 45A" species:7227 "Drosophila
melanogaster" [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS;NAS] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=IMP]
[GO:0005634 "nucleus" evidence=IC] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 EMBL:AE013599
GO:GO:0005524 GO:GO:0005634 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 GO:GO:0000381
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K14778
GeneTree:ENSGT00670000098028 EMBL:L13612 EMBL:Z23266 EMBL:AY058728
PIR:S38329 RefSeq:NP_476927.1 UniGene:Dm.4231
ProteinModelPortal:Q07886 SMR:Q07886 PaxDb:Q07886
EnsemblMetazoa:FBtr0088564 GeneID:35917 KEGG:dme:Dmel_CG12759
CTD:35917 FlyBase:FBgn0010220 InParanoid:Q07886 OMA:CQLLSMT
OrthoDB:EOG431ZDJ PhylomeDB:Q07886 GenomeRNAi:35917 NextBio:795815
Bgee:Q07886 GermOnline:CG12759 Uniprot:Q07886
Length = 521
Score = 239 (89.2 bits), Expect = 2.8e-34, Sum P(3) = 2.8e-34
Identities = 65/174 (37%), Positives = 92/174 (52%)
Query: 20 FSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIIN 79
F LGL L QL +LG + T +Q + IP IL+G+ + A TG+GKT A+ PI+
Sbjct: 9 FQILGLRPWLVKQLT-KLGLKGATPIQQKCIPAILAGQDCIGAAKTGSGKTFAFALPILE 67
Query: 80 HLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKA 139
L S P FALVL PT EL Q+ E + + + V GG ++ E
Sbjct: 68 RL-SEEP-----VSHFALVLTPTHELAYQISEQF-LVAGQAMGVRVCVVSGGTDQMVESQ 120
Query: 140 RLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEI 193
+L + I+VA PGRL DHL +F NL++++ DEADR+L F + + I
Sbjct: 121 KLMQRPHIVVAMPGRLADHLTGCDTFSFDNLKYLVVDEADRMLNGDFDESLSII 174
Score = 197 (74.4 bits), Expect = 2.8e-34, Sum P(3) = 2.8e-34
Identities = 41/100 (41%), Positives = 63/100 (63%)
Query: 366 LHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRVG 425
LHG M+Q++R FK+ + L++TDVAARGLD P V+ ++ + EY+HRVG
Sbjct: 281 LHGFMRQKERVAALSRFKSNQIRTLIATDVAARGLDIPSVELVMNHMLPRTPKEYIHRVG 340
Query: 426 RTARLGERGDSL-LFLQPVEMDYLQDLEKH-GVSLTEYPL 463
RTAR G +G S+ +F P +++ L +E+ LTE+P+
Sbjct: 341 RTARAGRKGMSISIFRFPRDLELLAAIEEEINTKLTEHPI 380
Score = 145 (56.1 bits), Expect = 5.0e-23, Sum P(2) = 5.0e-23
Identities = 47/133 (35%), Positives = 67/133 (50%)
Query: 95 FALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGR 154
FALVL PT EL Q+ E + + + V GG ++ E +L + I+VA PGR
Sbjct: 77 FALVLTPTHELAYQISEQF-LVAGQAMGVRVCVVSGGTDQMVESQKLMQRPHIVVAMPGR 135
Query: 155 LLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNV 214
L DHL +F NL++++ DEADR+L F +E L I+ R +
Sbjct: 136 LADHLTGCDTFSFDNLKYLVVDEADRMLNGDF----DESLSII-ERCLPKT--------- 181
Query: 215 KRQNLLLSATLNE 227
RQNL SAT+ +
Sbjct: 182 -RQNLFFSATMKD 193
Score = 48 (22.0 bits), Expect = 2.8e-34, Sum P(3) = 2.8e-34
Identities = 21/90 (23%), Positives = 39/90 (43%)
Query: 243 IGLDEKKLPEDKSHVRFGSLESD-VKEEVEHP--STTMR-STTEDFKLPAQLVQRYVKVP 298
+ + E+ LP+ + ++ F + D +KE P S S D L QRY+
Sbjct: 171 LSIIERCLPKTRQNLFFSATMKDFIKESSIFPIASDCFEWSQDSDVATVETLDQRYLLCA 230
Query: 299 CGSRLAVLLSILKHLFDTEVSQKLVVFFST 328
R VL+ L+ + + +++F +T
Sbjct: 231 DYDRDMVLIEALRKYREENENANVMIFTNT 260
>ZFIN|ZDB-GENE-021220-2 [details] [associations]
symbol:ddx54 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
54" species:7955 "Danio rerio" [GO:0016818 "hydrolase activity,
acting on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012541 Pfam:PF00270 Pfam:PF00271 Pfam:PF08147
ProDom:PD024971 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-021220-2 GO:GO:0005524 GO:GO:0005634 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 KO:K14808
HOGENOM:HOG000246455 GeneTree:ENSGT00550000075100 CTD:79039
HOVERGEN:HBG051333 OrthoDB:EOG469QTB EMBL:CU929062 EMBL:FP236447
EMBL:AY099535 IPI:IPI00481864 RefSeq:NP_775375.1 UniGene:Dr.18320
STRING:Q8JGR2 Ensembl:ENSDART00000026416 Ensembl:ENSDART00000128587
GeneID:286777 KEGG:dre:286777 NextBio:20806437 Uniprot:Q8JGR2
Length = 862
Score = 293 (108.2 bits), Expect = 3.8e-34, Sum P(2) = 3.8e-34
Identities = 63/178 (35%), Positives = 108/178 (60%)
Query: 17 SCSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAP 76
S F S+GL + + ++ G++ PT +Q + IPVIL G+ V+ A TG+GKT A+L P
Sbjct: 77 SGGFQSMGLSYPVYKGIMKK-GYKVPTPIQRKTIPVILDGKDVVAMARTGSGKTAAFLVP 135
Query: 77 IINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSK 136
+ L++ P+ +G AL+L PTREL LQ + K L +F + ++GG++
Sbjct: 136 LFEKLKA--PQAQ--TGARALILTPTRELALQTMKFT-KELGKFTGLRTALILGGDSMDD 190
Query: 137 EKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEIL 194
+ A L + I++ TPGRL+ H+ + ++ +++FDEADR+ E+GF ++++EI+
Sbjct: 191 QFAALHENPDIIIGTPGRLM-HVIQEMNLKLQSVEYVVFDEADRLFEMGFAEQLQEII 247
Score = 173 (66.0 bits), Expect = 1.4e-20, Sum P(2) = 1.4e-20
Identities = 50/154 (32%), Positives = 81/154 (52%)
Query: 115 KLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWII 174
K L +F + ++GG++ + A L + I++ TPGRL+ H+ + ++ +++
Sbjct: 169 KELGKFTGLRTALILGGDSMDDQFAALHENPDIIIGTPGRLM-HVIQEMNLKLQSVEYVV 227
Query: 175 FDEADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAK 234
FDEADR+ E+GF ++++EI+ R + RQ LL SATL + + A+
Sbjct: 228 FDEADRLFEMGFAEQLQEII-----RRLPDA----------RQTLLFSATLPKLIVEFAR 272
Query: 235 ISLETPVLIGLD-EKKLPEDKSHVRFGSLESDVK 267
L PVLI LD + KL E + F SL D K
Sbjct: 273 AGLTEPVLIRLDVDTKLSEQLK-LSFFSLRLDDK 305
Score = 154 (59.3 bits), Expect = 3.8e-34, Sum P(2) = 3.8e-34
Identities = 34/86 (39%), Positives = 49/86 (56%)
Query: 366 LHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRVG 425
++ + Q R+ + G F K LLL TDVAARG+D P + +I Y+ + ++HRVG
Sbjct: 350 IYSALDQTARKISIGRFVHRKVMLLLVTDVAARGIDIPLLDNVINYNFPCKPKLFLHRVG 409
Query: 426 RTARLGERGDSLLFLQPVEMDYLQDL 451
R AR G G + + P E+ YL DL
Sbjct: 410 RVARAGRGGTAYSLVCPDEVPYLYDL 435
>ASPGD|ASPL0000006660 [details] [associations]
symbol:AN5931 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0000184 GO:GO:0003723 EMBL:BN001301
EMBL:AACD01000101 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823 RefSeq:XP_663535.1
ProteinModelPortal:Q5B0J9 STRING:Q5B0J9 PRIDE:Q5B0J9
EnsemblFungi:CADANIAT00007099 GeneID:2870997 KEGG:ani:AN5931.2
OMA:IDAMSGY OrthoDB:EOG47SWP6 Uniprot:Q5B0J9
Length = 563
Score = 269 (99.8 bits), Expect = 4.9e-34, Sum P(2) = 4.9e-34
Identities = 61/176 (34%), Positives = 101/176 (57%)
Query: 19 SFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPII 78
+F G + +++ + GFE PT +Q+Q P+ LSGR V+ A TG+GKT++Y P I
Sbjct: 141 TFDEAGFPQYVLSEVKAQ-GFEKPTAIQSQGWPMALSGRDVVGIAETGSGKTLSYCLPAI 199
Query: 79 NHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEK 138
H+ + P + G L+L PTREL +Q+ + K + I V GG + +
Sbjct: 200 VHINA-QPLLAPGDGPIVLILAPTRELAVQIQAEISKF-GKSSRIRNTCVYGGVPKGPQI 257
Query: 139 ARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEIL 194
L +G+ + +ATPGRL+D L+ + L + +++ DEADR+L++GF +I +I+
Sbjct: 258 RDLSRGVEVCIATPGRLIDMLEAGRTNLR-RVTYLVLDEADRMLDMGFEPQIRKII 312
Score = 172 (65.6 bits), Expect = 4.9e-34, Sum P(2) = 4.9e-34
Identities = 31/86 (36%), Positives = 51/86 (59%)
Query: 366 LHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRVG 425
+HG+ +Q++R FKT K ++++TDVA+RG+D + +I YD + +YVHR+G
Sbjct: 417 IHGDKQQQERDWVLNEFKTGKSPIMVATDVASRGIDVRDITHVINYDYPNNSEDYVHRIG 476
Query: 426 RTARLGERGDSLLFLQPVEMDYLQDL 451
RT R G +G ++ F +DL
Sbjct: 477 RTGRAGAKGTAITFFTTDNAKQARDL 502
Score = 115 (45.5 bits), Expect = 5.9e-17, Sum P(2) = 5.9e-17
Identities = 34/123 (27%), Positives = 60/123 (48%)
Query: 128 VMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFG 187
V GG + + L +G+ + +ATPGRL+D L+ + L + +++ DEADR+L++GF
Sbjct: 247 VYGGVPKGPQIRDLSRGVEVCIATPGRLIDMLEAGRTNLR-RVTYLVLDEADRMLDMGFE 305
Query: 188 KEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDE 247
+I +I+ + RQ + SAT ++V LA L + + +
Sbjct: 306 PQIRKIISQI---------------RPDRQTCMWSATWPKEVRQLASDFLNNYIQVNIGS 350
Query: 248 KKL 250
L
Sbjct: 351 MDL 353
Score = 39 (18.8 bits), Expect = 4.4e-09, Sum P(2) = 4.4e-09
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 271 EHPSTTMRSTTE--DFKLPAQLVQRYVKVP 298
EHP T RS E +F+ ++ + VP
Sbjct: 107 EHPDVTARSQREVDEFRKKCEMTVQGRDVP 136
>UNIPROTKB|E1BGI6 [details] [associations]
symbol:DDX54 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0030331 "estrogen receptor binding" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IEA] [GO:0003714 "transcription corepressor activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012541 Pfam:PF00270 Pfam:PF00271
Pfam:PF08147 ProDom:PD024971 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003714 GO:GO:0005730
GO:GO:0003723 GO:GO:0006396 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 InterPro:IPR014014 PROSITE:PS51195
OMA:FYIPYRP GeneTree:ENSGT00550000075100 EMBL:DAAA02045421
IPI:IPI00690851 Ensembl:ENSBTAT00000029525 Uniprot:E1BGI6
Length = 877
Score = 293 (108.2 bits), Expect = 5.5e-34, Sum P(3) = 5.5e-34
Identities = 66/194 (34%), Positives = 116/194 (59%)
Query: 1 MIKMSKKKETVKEIFASCSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVL 60
M++ KK+ K+ S F S+GL + + ++ G++ PT +Q + IP+IL G+ V+
Sbjct: 84 MVRAQNKKK--KK---SGGFQSMGLSYPVFKGIMKK-GYKVPTPIQRKTIPMILDGKDVV 137
Query: 61 VNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRF 120
A TG+GKT +L P+ L+++S + +G AL+L PTREL LQ + K L +F
Sbjct: 138 AMARTGSGKTACFLIPMFERLKTHSAQ----TGARALILSPTRELALQTMKFT-KELGKF 192
Query: 121 HWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADR 180
+ ++GG+ + A L + I++ATPGRL+ H+ + ++ +++FDEADR
Sbjct: 193 TGLKTALILGGDKMEDQFAALHENPDIIIATPGRLV-HVAVEMNLKLQSVEYVVFDEADR 251
Query: 181 ILELGFGKEIEEIL 194
+ E+GF ++++EI+
Sbjct: 252 LFEMGFAEQLQEII 265
Score = 170 (64.9 bits), Expect = 2.8e-19, Sum P(2) = 2.8e-19
Identities = 50/157 (31%), Positives = 81/157 (51%)
Query: 115 KLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWII 174
K L +F + ++GG+ + A L + I++ATPGRL+ H+ + ++ +++
Sbjct: 187 KELGKFTGLKTALILGGDKMEDQFAALHENPDIIIATPGRLV-HVAVEMNLKLQSVEYVV 245
Query: 175 FDEADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAK 234
FDEADR+ E+GF ++++EI IG + G+ Q +L SATL + + A+
Sbjct: 246 FDEADRLFEMGFAEQLQEI--------IGRLPGGH-------QTVLFSATLPKLLVEFAR 290
Query: 235 ISLETPVLIGLD-EKKLPEDKSHVRFGSLESDVKEEV 270
L PVLI LD + KL E F + D K V
Sbjct: 291 AGLTEPVLIRLDVDSKLNEQLK-TSFFLVREDAKAAV 326
Score = 145 (56.1 bits), Expect = 5.5e-34, Sum P(3) = 5.5e-34
Identities = 34/95 (35%), Positives = 50/95 (52%)
Query: 366 LHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRVG 425
++ + Q R+ F K + L+ TD+AARGLD P + +I Y + ++HRVG
Sbjct: 368 IYSALDQTARKINLARFTHGKCSALIVTDLAARGLDIPLLDNVINYSFPAKGKLFLHRVG 427
Query: 426 RTARLGERGDSLLFLQPVEMDYLQDLEKH-GVSLT 459
R AR G G + + P E+ YL DL G +LT
Sbjct: 428 RVARAGRSGTAYSLVAPDEVPYLLDLHLFLGRALT 462
Score = 48 (22.0 bits), Expect = 5.5e-34, Sum P(3) = 5.5e-34
Identities = 17/58 (29%), Positives = 30/58 (51%)
Query: 283 DFKLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLS 340
D KL QL + V ++ AVLL +L+++ + + VVF +T ++ LL+
Sbjct: 304 DSKLNEQLKTSFFLVREDAKAAVLLHLLRNVVRPQ--DQTVVFVATKHHAEYLSELLA 359
>MGI|MGI:1919240 [details] [associations]
symbol:Ddx54 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 54"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003714 "transcription corepressor activity" evidence=ISO]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=ISO] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005102 "receptor binding"
evidence=ISO] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006396 "RNA processing" evidence=ISO]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0016070 "RNA metabolic process" evidence=ISO] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0016818 "hydrolase activity,
acting on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0030331 "estrogen receptor binding" evidence=ISO]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012541 Pfam:PF00270 Pfam:PF00271 Pfam:PF08147
ProDom:PD024971 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
MGI:MGI:1919240 GO:GO:0005524 GO:GO:0003714 GO:GO:0005730
GO:GO:0006355 GO:GO:0006351 GO:GO:0003723 GO:GO:0006396
GO:GO:0030331 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K14808 HOGENOM:HOG000246455 OMA:FYIPYRP
GeneTree:ENSGT00550000075100 CTD:79039 HOVERGEN:HBG051333
EMBL:AF319547 EMBL:BC043699 IPI:IPI00875042 RefSeq:NP_082317.1
UniGene:Mm.24495 ProteinModelPortal:Q8K4L0 SMR:Q8K4L0 STRING:Q8K4L0
PhosphoSite:Q8K4L0 PaxDb:Q8K4L0 PRIDE:Q8K4L0
Ensembl:ENSMUST00000031598 GeneID:71990 KEGG:mmu:71990
UCSC:uc008zhq.1 NextBio:335150 Bgee:Q8K4L0 CleanEx:MM_DDX54
Genevestigator:Q8K4L0 Uniprot:Q8K4L0
Length = 874
Score = 292 (107.8 bits), Expect = 5.7e-34, Sum P(3) = 5.7e-34
Identities = 67/194 (34%), Positives = 115/194 (59%)
Query: 1 MIKMSKKKETVKEIFASCSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVL 60
M++ KK+ K+ S F S+GL + + ++ G++ PT +Q + IPVIL G+ V+
Sbjct: 83 MVRAQNKKK--KK---SGGFQSMGLSYPVFKGIMKK-GYKVPTPIQRKTIPVILDGKDVV 136
Query: 61 VNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRF 120
A TG+GKT +L P+ L++ S + +G AL+L PTREL LQ + K L +F
Sbjct: 137 AMARTGSGKTACFLLPMFERLKARSAQ----TGARALILSPTRELALQTMKFT-KELGKF 191
Query: 121 HWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADR 180
+ ++GG+ + A L + I++ATPGRL+ H+ + ++ +++FDEADR
Sbjct: 192 TGLKTALILGGDKMEDQFAALHENPDIIIATPGRLV-HVAVEMNLKLQSVEYVVFDEADR 250
Query: 181 ILELGFGKEIEEIL 194
+ E+GF ++++EI+
Sbjct: 251 LFEMGFAEQLQEII 264
Score = 169 (64.5 bits), Expect = 2.2e-19, Sum P(2) = 2.2e-19
Identities = 50/157 (31%), Positives = 81/157 (51%)
Query: 115 KLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWII 174
K L +F + ++GG+ + A L + I++ATPGRL+ H+ + ++ +++
Sbjct: 186 KELGKFTGLKTALILGGDKMEDQFAALHENPDIIIATPGRLV-HVAVEMNLKLQSVEYVV 244
Query: 175 FDEADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAK 234
FDEADR+ E+GF ++++EI IG + G+ Q +L SATL + + A+
Sbjct: 245 FDEADRLFEMGFAEQLQEI--------IGRLPGGH-------QTVLFSATLPKLLVEFAR 289
Query: 235 ISLETPVLIGLD-EKKLPEDKSHVRFGSLESDVKEEV 270
L PVLI LD + KL E F + D K V
Sbjct: 290 AGLTEPVLIRLDVDSKLNEQLK-TSFLLVREDTKAAV 325
Score = 147 (56.8 bits), Expect = 5.7e-34, Sum P(3) = 5.7e-34
Identities = 34/95 (35%), Positives = 50/95 (52%)
Query: 366 LHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRVG 425
++ + Q R+ F K + L+ TD+AARGLD P + +I Y + ++HRVG
Sbjct: 367 IYSALDQTARKINLAKFTHNKCSTLIVTDLAARGLDIPLLDNVINYSFPAKGKLFLHRVG 426
Query: 426 RTARLGERGDSLLFLQPVEMDYLQDLEKH-GVSLT 459
R AR G G + + P E+ YL DL G S+T
Sbjct: 427 RVARAGRSGTAYSLVAPDEVPYLLDLHLFLGRSVT 461
Score = 47 (21.6 bits), Expect = 5.7e-34, Sum P(3) = 5.7e-34
Identities = 17/57 (29%), Positives = 30/57 (52%)
Query: 283 DFKLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLL 339
D KL QL ++ V ++ AVLL +L+++ + + VVF +T ++ LL
Sbjct: 303 DSKLNEQLKTSFLLVREDTKAAVLLYLLQNVVRPQ--DQTVVFVATKHHAEYLTELL 357
>UNIPROTKB|P21507 [details] [associations]
symbol:srmB "SrmB, DEAD-box RNA helicase" species:83333
"Escherichia coli K-12" [GO:0033592 "RNA strand annealing activity"
evidence=IDA] [GO:0030687 "preribosome, large subunit precursor"
evidence=IDA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IDA] [GO:0000027 "ribosomal large subunit assembly"
evidence=IGI;IMP] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:U00096
EMBL:AP009048 GenomeReviews:AP009048_GR GenomeReviews:U00096_GR
EMBL:D64044 GO:GO:0030687 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 GO:GO:0000027 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0033592 EMBL:D13169
OMA:PLAMDQR HOGENOM:HOG000268807 PDB:2YJT PDBsum:2YJT EMBL:X14152
PIR:G65035 RefSeq:NP_417071.1 RefSeq:YP_490804.1
ProteinModelPortal:P21507 SMR:P21507 DIP:DIP-10920N IntAct:P21507
MINT:MINT-1225512 PRIDE:P21507 EnsemblBacteria:EBESCT00000003180
EnsemblBacteria:EBESCT00000015098 GeneID:12934372 GeneID:947055
KEGG:ecj:Y75_p2529 KEGG:eco:b2576 PATRIC:32120551 EchoBASE:EB0968
EcoGene:EG10975 KO:K05590 ProtClustDB:PRK11192
BioCyc:EcoCyc:EG10975-MONOMER BioCyc:ECOL316407:JW2560-MONOMER
Genevestigator:P21507 Uniprot:P21507
Length = 444
Score = 287 (106.1 bits), Expect = 6.0e-34, Sum P(2) = 6.0e-34
Identities = 71/175 (40%), Positives = 100/175 (57%)
Query: 19 SFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPII 78
+FS L L +L + L+++ GF PT +QA AIP L GR VL +A TGTGKT AYL P +
Sbjct: 5 TFSELELDESLLEALQDK-GFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPAL 63
Query: 79 NHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEK 138
HL + PR +S L+L PTREL +QV + +L H + + GG
Sbjct: 64 QHLLDF-PR-KKSGPPRILILTPTRELAMQVSDHARELAKHTHLDI-ATITGGVAYMNHA 120
Query: 139 ARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEI 193
+ I+VAT GRLL ++K +F + +I DEADR+L++GF ++IE I
Sbjct: 121 EVFSENQDIVVATTGRLLQYIKE-ENFDCRAVETLILDEADRMLDMGFAQDIEHI 174
Score = 141 (54.7 bits), Expect = 6.0e-34, Sum P(2) = 6.0e-34
Identities = 37/116 (31%), Positives = 57/116 (49%)
Query: 366 LHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRVG 425
L G M Q R + +L++TDVAARG+D P V + +D Y+HR+G
Sbjct: 278 LEGEMVQGKRNEAIKRLTEGRVNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIG 337
Query: 426 RTARLGERGDSLLFLQPVEMDYLQDLEKHGVSLTEYPLLKVLDSFPLYGQKPRVKK 481
RTAR G +G ++ ++ D+L L K G + E +V+D + P K+
Sbjct: 338 RTARAGRKGTAISLVEA--HDHLL-LGKVGRYIEEPIKARVIDELRPKTRAPSEKQ 390
Score = 117 (46.2 bits), Expect = 4.7e-14, Sum P(2) = 4.7e-14
Identities = 38/111 (34%), Positives = 57/111 (51%)
Query: 147 ILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILGSRNIGSIG 206
I+VAT GRLL ++K +F + +I DEADR+L++GF ++IE I G
Sbjct: 129 IVVATTGRLLQYIKE-ENFDCRAVETLILDEADRMLDMGFAQDIEHIA-----------G 176
Query: 207 EGNEVSNVKRQNLLLSATLN-EKVNHLAKISLETPVLIGLDEKKLPEDKSH 256
E + ++Q LL SATL + + A+ LE PV + + K H
Sbjct: 177 E----TRWRKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIH 223
Score = 42 (19.8 bits), Expect = 2.6e-06, Sum P(2) = 2.6e-06
Identities = 19/63 (30%), Positives = 27/63 (42%)
Query: 259 FGSLESD--VKEEVEHPSTTMRSTTEDFKLPAQLVQRYV--KVPCGS--RLAVLLSILKH 312
F LE D + E ++ T + + +P L R V P G+ A LL L+H
Sbjct: 6 FSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQH 65
Query: 313 LFD 315
L D
Sbjct: 66 LLD 68
Score = 38 (18.4 bits), Expect = 3.6e-23, Sum P(2) = 3.6e-23
Identities = 13/36 (36%), Positives = 17/36 (47%)
Query: 415 GEATEYVHRVGRTARLGERGDSLLFLQPVEMDYLQD 450
G A + H G T R +LLF +E D +QD
Sbjct: 166 GFAQDIEHIAGETRW---RKQTLLFSATLEGDAIQD 198
>UNIPROTKB|Q8EGU0 [details] [associations]
symbol:SO_1501 "ATP-dependent RNA helicase DEAD box family"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268807
OMA:GGANMNP RefSeq:NP_717118.1 ProteinModelPortal:Q8EGU0
GeneID:1169311 KEGG:son:SO_1501 PATRIC:23522644
ProtClustDB:CLSK906294 Uniprot:Q8EGU0
Length = 456
Score = 274 (101.5 bits), Expect = 7.2e-34, Sum P(2) = 7.2e-34
Identities = 67/174 (38%), Positives = 106/174 (60%)
Query: 20 FSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIIN 79
F +LGL S L + + E G++ T+VQ Q IP+ L G+ ++ A TGTGKT A+ P++
Sbjct: 3 FDTLGLSSPLLNAITE-CGYQQLTQVQQQVIPLALVGKDIMACAQTGTGKTAAFALPVLE 61
Query: 80 HLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKA 139
L + P D+ ALV+ PTREL +QV + K +F + V GG N + ++
Sbjct: 62 QLAA-KPA-DKPL-LRALVMTPTRELAIQVCANIQKY-SQFLPLKTLAVYGGANMNPQRK 117
Query: 140 RLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEI 193
+ +G+ ILVATPGRL D + + L +++ ++ DEADR+L+LGF ++IE++
Sbjct: 118 GVEQGVDILVATPGRLFDIIGQFNLDL-SSVTTLVIDEADRMLDLGFVRDIEKV 170
Score = 158 (60.7 bits), Expect = 7.2e-34, Sum P(2) = 7.2e-34
Identities = 33/86 (38%), Positives = 49/86 (56%)
Query: 367 HGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRVGR 426
HG+ Q R FK K +L++TDVAARGLD + +I + A +YVHR+GR
Sbjct: 272 HGDKTQGARNRVLDDFKAGKLRVLVATDVAARGLDIQALPLVINLELPFLAEDYVHRIGR 331
Query: 427 TARLGERGDSLLFLQPVEMDYLQDLE 452
T R G G ++ F+ P + + L ++E
Sbjct: 332 TGRAGLSGRAISFVSPADDEMLAEIE 357
Score = 140 (54.3 bits), Expect = 2.6e-18, Sum P(2) = 2.6e-18
Identities = 39/120 (32%), Positives = 65/120 (54%)
Query: 128 VMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFG 187
V GG N + ++ + +G+ ILVATPGRL D + + L +++ ++ DEADR+L+LGF
Sbjct: 106 VYGGANMNPQRKGVEQGVDILVATPGRLFDIIGQFNLDL-SSVTTLVIDEADRMLDLGFV 164
Query: 188 KEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDE 247
++IE++ R I + Q +L SAT ++ V L+ L P + + E
Sbjct: 165 RDIEKV-----KRLIAPV----------HQTMLFSATYSDAVKQLSHKMLNQPQWVNVAE 209
>TIGR_CMR|SO_1501 [details] [associations]
symbol:SO_1501 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268807
OMA:GGANMNP RefSeq:NP_717118.1 ProteinModelPortal:Q8EGU0
GeneID:1169311 KEGG:son:SO_1501 PATRIC:23522644
ProtClustDB:CLSK906294 Uniprot:Q8EGU0
Length = 456
Score = 274 (101.5 bits), Expect = 7.2e-34, Sum P(2) = 7.2e-34
Identities = 67/174 (38%), Positives = 106/174 (60%)
Query: 20 FSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIIN 79
F +LGL S L + + E G++ T+VQ Q IP+ L G+ ++ A TGTGKT A+ P++
Sbjct: 3 FDTLGLSSPLLNAITE-CGYQQLTQVQQQVIPLALVGKDIMACAQTGTGKTAAFALPVLE 61
Query: 80 HLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKA 139
L + P D+ ALV+ PTREL +QV + K +F + V GG N + ++
Sbjct: 62 QLAA-KPA-DKPL-LRALVMTPTRELAIQVCANIQKY-SQFLPLKTLAVYGGANMNPQRK 117
Query: 140 RLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEI 193
+ +G+ ILVATPGRL D + + L +++ ++ DEADR+L+LGF ++IE++
Sbjct: 118 GVEQGVDILVATPGRLFDIIGQFNLDL-SSVTTLVIDEADRMLDLGFVRDIEKV 170
Score = 158 (60.7 bits), Expect = 7.2e-34, Sum P(2) = 7.2e-34
Identities = 33/86 (38%), Positives = 49/86 (56%)
Query: 367 HGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRVGR 426
HG+ Q R FK K +L++TDVAARGLD + +I + A +YVHR+GR
Sbjct: 272 HGDKTQGARNRVLDDFKAGKLRVLVATDVAARGLDIQALPLVINLELPFLAEDYVHRIGR 331
Query: 427 TARLGERGDSLLFLQPVEMDYLQDLE 452
T R G G ++ F+ P + + L ++E
Sbjct: 332 TGRAGLSGRAISFVSPADDEMLAEIE 357
Score = 140 (54.3 bits), Expect = 2.6e-18, Sum P(2) = 2.6e-18
Identities = 39/120 (32%), Positives = 65/120 (54%)
Query: 128 VMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFG 187
V GG N + ++ + +G+ ILVATPGRL D + + L +++ ++ DEADR+L+LGF
Sbjct: 106 VYGGANMNPQRKGVEQGVDILVATPGRLFDIIGQFNLDL-SSVTTLVIDEADRMLDLGFV 164
Query: 188 KEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDE 247
++IE++ R I + Q +L SAT ++ V L+ L P + + E
Sbjct: 165 RDIEKV-----KRLIAPV----------HQTMLFSATYSDAVKQLSHKMLNQPQWVNVAE 209
>UNIPROTKB|Q91372 [details] [associations]
symbol:ddx4 "Probable ATP-dependent RNA helicase DDX4"
species:8355 "Xenopus laevis" [GO:0003674 "molecular_function"
evidence=ND] [GO:0005634 "nucleus" evidence=IDA] [GO:0005635
"nuclear envelope" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0007281 "germ cell development" evidence=IMP]
[GO:0045495 "pole plasm" evidence=IDA] [GO:0071546 "pi-body"
evidence=ISS] [GO:0071547 "piP-body" evidence=ISS] [GO:0032019
"mitochondrial cloud" evidence=IDA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0007275
GO:GO:0005524 GO:GO:0005635 GO:GO:0048477 GO:GO:0007283
GO:GO:0003676 GO:GO:0007281 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0071546 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HSSP:P09052 HOVERGEN:HBG015893 CTD:54514 KO:K13982
GO:GO:0071547 EMBL:AF046043 PIR:I51235 RefSeq:NP_001081728.1
UniGene:Xl.256 ProteinModelPortal:Q91372 SMR:Q91372 GeneID:398019
KEGG:xla:398019 Xenbase:XB-GENE-1016814 Uniprot:Q91372
Length = 700
Score = 279 (103.3 bits), Expect = 8.3e-34, Sum P(2) = 8.3e-34
Identities = 78/228 (34%), Positives = 124/228 (54%)
Query: 27 STLCDQLRE---RLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQS 83
+ LC+ LR R G+ T VQ +IP+I++GR ++ A TG+GKT A+L PI++++ +
Sbjct: 279 ANLCETLRRNVARAGYVKLTPVQKHSIPIIMAGRDLMACAQTGSGKTAAFLLPILSYMMN 338
Query: 84 Y---SPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKAR 140
+ + + A+++ PTREL Q+Y K + + P V GG
Sbjct: 339 EGITASQYLQLQEPEAIIIAPTRELINQIYLDARKFSYGT-CVRPVVVYGGIQPVHAMRD 397
Query: 141 LRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILGSR 200
+ KG +IL ATPGRLLD + L + LR+++ DEADR+L++GF EIE+++ G
Sbjct: 398 VEKGCNILCATPGRLLDIVSKEKIGL-SKLRYLVLDEADRMLDMGFAPEIEKLMTKPGMP 456
Query: 201 NIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETP---VLIGL 245
+ KRQ L+ SAT E++ LA L++ V++GL
Sbjct: 457 -----------TKEKRQTLMFSATYPEEIRRLASNYLKSEHLFVVVGL 493
Score = 163 (62.4 bits), Expect = 8.3e-34, Sum P(2) = 8.3e-34
Identities = 34/83 (40%), Positives = 49/83 (59%)
Query: 366 LHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRVG 425
+HG+ +Q R + F+T K +++ T VAARGLD V+ +I YD E EYVHR+G
Sbjct: 556 IHGDREQYQRESALWDFRTGKCTVIVCTAVAARGLDIENVQHVINYDVPKEVDEYVHRIG 615
Query: 426 RTARLGERGDSLLFLQPVEMDYL 448
RT R G G + F V+ D++
Sbjct: 616 RTGRCGNTGKATSFFN-VQDDHV 637
Score = 40 (19.1 bits), Expect = 6.7e-08, Sum P(2) = 6.7e-08
Identities = 9/24 (37%), Positives = 16/24 (66%)
Query: 176 DEADRILELGFGKEIEEILDILGS 199
D A +LE+ ++E++L+IL S
Sbjct: 500 DVAQTVLEMRENGKMEKLLEILKS 523
>UNIPROTKB|Q0C354 [details] [associations]
symbol:rhlE "ATP-dependent RNA helicase RhlE"
species:228405 "Hyphomonas neptunium ATCC 15444" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:CP000158
GenomeReviews:CP000158_GR GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927
RefSeq:YP_759839.1 ProteinModelPortal:Q0C354 STRING:Q0C354
GeneID:4290097 KEGG:hne:HNE_1118 PATRIC:32215041 OMA:KHGSEKL
BioCyc:HNEP228405:GI69-1155-MONOMER Uniprot:Q0C354
Length = 464
Score = 263 (97.6 bits), Expect = 8.8e-34, Sum P(2) = 8.8e-34
Identities = 69/168 (41%), Positives = 98/168 (58%)
Query: 20 FSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIIN 79
F SLGL + L + G+ APT +Q QAIP+++ GR ++ A TGTGKT+A+ API++
Sbjct: 9 FQSLGLTGRILTSLT-KAGYTAPTPIQEQAIPLVIQGRDIVGLAQTGTGKTLAFAAPILD 67
Query: 80 HL-QSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEK 138
L ++ SP R GT LVL PTREL Q+ + V V GG +
Sbjct: 68 RLSRNASPAPVR--GTRVLVLAPTRELAGQIATSFGTYGAGLNLRVV-MVCGGAKIGGQI 124
Query: 139 ARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGF 186
+L +G ILVATPGRL+D ++ + L + +I DEAD++L+LGF
Sbjct: 125 RQLERGAHILVATPGRLIDLMEQRAVSLD-KVETLILDEADQMLDLGF 171
Score = 171 (65.3 bits), Expect = 8.8e-34, Sum P(2) = 8.8e-34
Identities = 40/108 (37%), Positives = 58/108 (53%)
Query: 366 LHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRVG 425
+HGN Q R AFK + +L++TD+AARG+ + +I YD ++VHR+G
Sbjct: 280 IHGNKSQSQREKALEAFKAGRVPILVATDIAARGIHVDALTHVINYDLPDVPEQFVHRIG 339
Query: 426 RTARLGERGDSLLFLQPVEMDYLQDLEK--------HGVSLTEYPLLK 465
RTAR G G ++ F E L+ +EK +GVSL + PL K
Sbjct: 340 RTARAGNSGVAISFCSRDERPTLRAIEKLTGLKLAPNGVSLPDEPLRK 387
Score = 129 (50.5 bits), Expect = 1.3e-18, Sum P(2) = 1.3e-18
Identities = 40/118 (33%), Positives = 60/118 (50%)
Query: 128 VMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFG 187
V GG + +L +G ILVATPGRL+D ++ + L + +I DEAD++L+LGF
Sbjct: 114 VCGGAKIGGQIRQLERGAHILVATPGRLIDLMEQRAVSLD-KVETLILDEADQMLDLGFI 172
Query: 188 KEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGL 245
+ I ++N+ S KRQ L SAT+ + V LA L P + +
Sbjct: 173 HALRAI-----AKNVPS----------KRQTLFFSATMPKAVESLAATFLRNPAEVSV 215
>DICTYBASE|DDB_G0291588 [details] [associations]
symbol:ddx55 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0042254 "ribosome biogenesis" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0006364 "rRNA
processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 dictyBase:DDB_G0291588 GO:GO:0005524
EMBL:AAFI02000177 GenomeReviews:CM000155_GR GO:GO:0005730
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959 KO:K14809
OMA:HEKKVET RefSeq:XP_635318.1 ProteinModelPortal:Q54EC2
STRING:Q54EC2 EnsemblProtists:DDB0234215 GeneID:8628262
KEGG:ddi:DDB_G0291588 ProtClustDB:CLSZ2429585 Uniprot:Q54EC2
Length = 663
Score = 283 (104.7 bits), Expect = 9.4e-34, Sum P(2) = 9.4e-34
Identities = 79/243 (32%), Positives = 125/243 (51%)
Query: 249 KLPEDKSHVRFGSLE-SDVKE----EVEHP---STTMR--STTEDFKLPAQLVQRYVKVP 298
KLP+ + F + + S+VKE + +P S +++ T ED +P L RY+ VP
Sbjct: 234 KLPKQRRTGLFSATQTSEVKELARTGMRNPFKVSVSVKHIETHEDQSIPTTLDNRYMIVP 293
Query: 299 CGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLF 358
RL L+ L + D K++++F TC VD+ + +L + +P F
Sbjct: 294 VEERLNQLVHFLLNHID---KNKIIIYFLTCSTVDYFFKILQSVKVLS-GKP-------F 342
Query: 359 LRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEAT 418
F LHG R F +F LLSTD+AARGLD P V ++QYDS +
Sbjct: 343 -----FSLHGKAPHSQRIKVFDSFSQATNGCLLSTDLAARGLDIPNVDWVLQYDSPQDPK 397
Query: 419 EYVHRVGRTARLGERGDSLLFLQPVEMDYLQDLEKHGVSLTEYPLLKVLDSFPLYGQKPR 478
+VHR+GRTAR+G G++L+FL P E Y++ L+ + + PL++++ + + P
Sbjct: 398 AFVHRIGRTARMGRDGNALIFLSPEEDSYIEFLK-----IKKVPLVEMVKAENVTNVLPE 452
Query: 479 VKK 481
+KK
Sbjct: 453 IKK 455
Score = 157 (60.3 bits), Expect = 9.4e-34, Sum P(2) = 9.4e-34
Identities = 30/83 (36%), Positives = 55/83 (66%)
Query: 36 RLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTF 95
RLGF++ + VQ+ IP+ +S + VLV A TG+GKT+A++ PII + + ++
Sbjct: 27 RLGFKSMSPVQSAVIPLFMSNKDVLVEACTGSGKTLAFVIPIIEKILKRETNLKKTD-IA 85
Query: 96 ALVLVPTRELCLQVYEILHKLLH 118
++++ PTREL +Q+ ++L + L+
Sbjct: 86 SIIISPTRELAIQIQQVLLEFLN 108
Score = 96 (38.9 bits), Expect = 4.3e-13, Sum P(2) = 4.3e-13
Identities = 31/113 (27%), Positives = 54/113 (47%)
Query: 128 VMGGENRSKEKARLRK-GISILVATPGRLLDHL----KHTSSFLHTNLRWIIFDEADRIL 182
++GG + ++ + G +IL+ TPGR + L ++ F +I DEADR+L
Sbjct: 161 LIGGTDIYQDLVNYKNYGGNILIGTPGRTDEFLTRVVRNDQQFKFKEFEMLILDEADRLL 220
Query: 183 ELGFGKEIEEIL-DILGSRNIG--SIGEGNEVSNVKRQNLLLSATLNEKVNHL 232
++GF I IL + R G S + +EV + R + ++ V H+
Sbjct: 221 DMGFHLPINSILLKLPKQRRTGLFSATQTSEVKELARTGMRNPFKVSVSVKHI 273
>CGD|CAL0003204 [details] [associations]
symbol:DBP2 species:5476 "Candida albicans" [GO:0005730
"nucleolus" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0005739 "mitochondrion" evidence=IEA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 CGD:CAL0003204 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0000184 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 EMBL:AACQ01000245
EMBL:AACQ01000246 RefSeq:XP_710694.1 RefSeq:XP_710708.1
ProteinModelPortal:Q59LU0 PRIDE:Q59LU0 GeneID:3647692
GeneID:3647705 KEGG:cal:CaO19.171 KEGG:cal:CaO19.7804 KO:K12823
Uniprot:Q59LU0
Length = 562
Score = 277 (102.6 bits), Expect = 9.8e-34, Sum P(2) = 9.8e-34
Identities = 63/177 (35%), Positives = 102/177 (57%)
Query: 19 SFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPII 78
+F G + +++++ GF PT +Q Q P+ LSGR ++ AATG+GKT++Y P I
Sbjct: 128 TFDEAGFPDYVLQEVKDQ-GFPKPTPIQCQGWPMALSGRDMIGIAATGSGKTLSYCLPSI 186
Query: 79 NHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEK 138
H+ + P++ G LVL PTREL +Q+ K + I V GG + +
Sbjct: 187 VHINA-QPQLQYGDGPIVLVLAPTRELAVQIQTECSKF-GKSSRIRNTCVYGGAPKGPQI 244
Query: 139 ARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILD 195
L +G+ I +ATPGRL+D L+ + L + +++ DEADR+L++GF +I +I+D
Sbjct: 245 RDLARGVEICIATPGRLIDMLEAGKTNLK-RVTYLVLDEADRMLDMGFEPQIRKIVD 300
Score = 160 (61.4 bits), Expect = 9.8e-34, Sum P(2) = 9.8e-34
Identities = 29/74 (39%), Positives = 46/74 (62%)
Query: 366 LHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRVG 425
+HG+ +Q +R F+ K +++++TDVAARG+D + +I YD G +YVHR+G
Sbjct: 404 IHGDKEQNERDWVLDEFRKGKTSIMVATDVAARGIDVKGITHVINYDMPGNIEDYVHRIG 463
Query: 426 RTARLGERGDSLLF 439
RT R G G ++ F
Sbjct: 464 RTGRGGASGTAISF 477
Score = 133 (51.9 bits), Expect = 1.7e-17, Sum P(2) = 1.7e-17
Identities = 37/123 (30%), Positives = 64/123 (52%)
Query: 128 VMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFG 187
V GG + + L +G+ I +ATPGRL+D L+ + L + +++ DEADR+L++GF
Sbjct: 234 VYGGAPKGPQIRDLARGVEICIATPGRLIDMLEAGKTNLK-RVTYLVLDEADRMLDMGFE 292
Query: 188 KEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDE 247
+I +I+D + RQ L+ SAT ++V L + L P+ + +
Sbjct: 293 PQIRKIVDQI---------------RPDRQTLMWSATWPKEVQQLTRDYLNDPIQVTIGS 337
Query: 248 KKL 250
+L
Sbjct: 338 LEL 340
>UNIPROTKB|Q3MSQ8 [details] [associations]
symbol:ddx4 "Probable ATP-dependent RNA helicase DDX4"
species:45623 "Pelophylax lessonae" [GO:0071546 "pi-body"
evidence=ISS] [GO:0071547 "piP-body" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0007275 GO:GO:0005524 GO:GO:0005634
GO:GO:0030154 GO:GO:0048477 GO:GO:0007283 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0071546
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 HSSP:P09052
HOVERGEN:HBG015893 GO:GO:0071547 EMBL:AJ841700
ProteinModelPortal:Q3MSQ8 SMR:Q3MSQ8 Uniprot:Q3MSQ8
Length = 724
Score = 278 (102.9 bits), Expect = 1.0e-33, Sum P(2) = 1.0e-33
Identities = 75/222 (33%), Positives = 116/222 (52%)
Query: 27 STLCDQLRERL---GFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQS 83
+ LCD L + + G+ T +Q +IP+I++GR ++ A TG+GKT A+L PI+ HL
Sbjct: 291 ANLCDSLAKNVCKSGYVKLTPIQKHSIPIIVAGRDLMACAQTGSGKTAAFLLPILAHLMV 350
Query: 84 Y---SPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKAR 140
S A+++ PTREL Q+Y K + + P + GG +
Sbjct: 351 KGVESSAFQTLKEPEAIIVAPTRELINQIYLDARKFSYGT-CVRPVVIYGGTQMFHSLKQ 409
Query: 141 LRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILGSR 200
+ +G +IL ATPGRLLD ++ L T LR+++ DEADR+L++GF ++IE +L G
Sbjct: 410 ISEGCNILCATPGRLLDVIRKEKIGL-TKLRYLVLDEADRMLDMGFREDIENLLKSSGMP 468
Query: 201 NIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVL 242
S +RQ L+ SAT + LA+ L+ L
Sbjct: 469 -----------SKEERQTLMFSATFPSSIQSLAREILKPDYL 499
Score = 164 (62.8 bits), Expect = 1.0e-33, Sum P(2) = 1.0e-33
Identities = 42/129 (32%), Positives = 66/129 (51%)
Query: 366 LHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRVG 425
+HG+ +Q++R T F+T + ++++T VAARGLD V +I +D + EYVHR+G
Sbjct: 568 IHGDREQKERETALRDFRTGQCPVIVATSVAARGLDIENVSYVINFDIPDDIDEYVHRIG 627
Query: 426 RTARLGERGDSLLFLQPVEMDYLQDLEKHGVSLT-----EYPLLKVLDSFPLYGQK---P 477
RT R G G ++ F D Q + + V + E P +F +G P
Sbjct: 628 RTGRCGNTGRAISFFDK-RGDDEQRIARSLVKVLSDAHQEVPAWLEEVAFSAHGSSAYNP 686
Query: 478 RVKKFLTTE 486
R KF +T+
Sbjct: 687 RSNKFASTD 695
WARNING: HSPs involving 630 database sequences were not reported due to the
limiting value of parameter B = 250.
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.320 0.136 0.395 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 512 512 0.00087 119 3 11 22 0.38 34
35 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 880
No. of states in DFA: 608 (65 KB)
Total size of DFA: 278 KB (2147 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 43.49u 0.13s 43.62t Elapsed: 00:00:02
Total cpu time: 43.57u 0.13s 43.70t Elapsed: 00:00:02
Start: Thu May 9 22:12:24 2013 End: Thu May 9 22:12:26 2013
WARNINGS ISSUED: 2