Query 010357
Match_columns 512
No_of_seqs 207 out of 2387
Neff 10.5
Searched_HMMs 46136
Date Thu Mar 28 23:35:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010357.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010357hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0348 ATP-dependent RNA heli 100.0 3.1E-74 6.7E-79 531.7 35.8 478 11-505 129-611 (708)
2 KOG0330 ATP-dependent RNA heli 100.0 2.2E-66 4.8E-71 462.5 31.1 369 16-463 59-428 (476)
3 KOG0331 ATP-dependent RNA heli 100.0 1.1E-64 2.5E-69 482.5 33.4 367 19-453 92-458 (519)
4 KOG0342 ATP-dependent RNA heli 100.0 1.7E-61 3.6E-66 444.4 31.9 376 14-462 78-454 (543)
5 PRK04837 ATP-dependent RNA hel 100.0 2.2E-60 4.7E-65 470.7 41.6 383 14-468 4-390 (423)
6 KOG0338 ATP-dependent RNA heli 100.0 1.7E-61 3.7E-66 444.8 28.6 362 17-454 180-544 (691)
7 COG0513 SrmB Superfamily II DN 100.0 2.5E-60 5.3E-65 474.2 39.1 362 18-454 29-392 (513)
8 KOG0328 Predicted ATP-dependen 100.0 3.7E-61 7.9E-66 411.1 27.4 375 9-463 18-394 (400)
9 KOG0343 RNA Helicase [RNA proc 100.0 1.9E-60 4E-65 441.9 33.2 375 17-463 68-443 (758)
10 KOG0345 ATP-dependent RNA heli 100.0 6.6E-60 1.4E-64 430.9 34.3 375 18-461 4-383 (567)
11 PRK11776 ATP-dependent RNA hel 100.0 2E-59 4.3E-64 468.8 40.6 358 17-454 3-360 (460)
12 PTZ00110 helicase; Provisional 100.0 3.1E-59 6.7E-64 471.1 41.3 366 16-453 128-494 (545)
13 PRK10590 ATP-dependent RNA hel 100.0 3.3E-59 7.2E-64 464.7 39.7 363 18-454 1-363 (456)
14 PRK04537 ATP-dependent RNA hel 100.0 1.1E-58 2.4E-63 468.4 40.7 374 17-461 8-383 (572)
15 KOG0340 ATP-dependent RNA heli 100.0 1.4E-59 3.1E-64 414.1 28.7 374 16-463 5-382 (442)
16 PRK11634 ATP-dependent RNA hel 100.0 1.8E-58 4E-63 468.9 41.2 365 18-461 6-371 (629)
17 PLN00206 DEAD-box ATP-dependen 100.0 2.1E-58 4.5E-63 464.1 40.3 367 15-453 118-485 (518)
18 KOG0333 U5 snRNP-like RNA heli 100.0 1.6E-58 3.5E-63 426.8 32.2 380 15-453 242-634 (673)
19 PRK01297 ATP-dependent RNA hel 100.0 6E-57 1.3E-61 451.9 42.8 383 17-471 86-472 (475)
20 PRK11192 ATP-dependent RNA hel 100.0 1.6E-56 3.4E-61 445.4 42.0 360 18-453 1-362 (434)
21 KOG0326 ATP-dependent RNA heli 100.0 6.5E-59 1.4E-63 404.0 19.1 367 15-462 82-449 (459)
22 PTZ00424 helicase 45; Provisio 100.0 7E-55 1.5E-59 431.1 40.9 366 17-462 27-394 (401)
23 KOG0336 ATP-dependent RNA heli 100.0 4.6E-56 1E-60 398.5 26.4 365 15-452 216-581 (629)
24 KOG0346 RNA helicase [RNA proc 100.0 2.9E-55 6.3E-60 397.0 29.0 365 18-452 19-419 (569)
25 KOG0335 ATP-dependent RNA heli 100.0 1E-53 2.2E-58 400.2 28.6 369 19-453 75-454 (482)
26 KOG0347 RNA helicase [RNA proc 100.0 6.9E-55 1.5E-59 404.8 19.2 374 11-453 174-580 (731)
27 KOG0341 DEAD-box protein abstr 100.0 2.7E-54 5.8E-59 384.6 17.4 354 17-444 169-529 (610)
28 KOG0332 ATP-dependent RNA heli 100.0 1.3E-52 2.8E-57 372.3 24.8 372 8-461 80-463 (477)
29 TIGR03817 DECH_helic helicase/ 100.0 9.5E-51 2.1E-55 420.7 37.5 374 24-453 20-398 (742)
30 KOG0339 ATP-dependent RNA heli 100.0 3.9E-51 8.5E-56 376.1 30.0 373 12-458 217-594 (731)
31 KOG0350 DEAD-box ATP-dependent 100.0 2.5E-51 5.4E-56 377.2 26.7 379 19-453 128-550 (620)
32 KOG0327 Translation initiation 100.0 2.4E-51 5.1E-56 367.6 24.7 364 18-463 26-391 (397)
33 PLN03137 ATP-dependent DNA hel 100.0 2.3E-49 4.9E-54 406.9 36.8 343 19-454 436-798 (1195)
34 KOG0334 RNA helicase [RNA proc 100.0 3.2E-50 6.9E-55 402.8 26.6 366 15-453 362-730 (997)
35 TIGR00614 recQ_fam ATP-depende 100.0 2.5E-49 5.4E-54 395.0 33.0 330 33-454 3-344 (470)
36 KOG0337 ATP-dependent RNA heli 100.0 8.4E-50 1.8E-54 359.8 22.6 360 17-454 20-379 (529)
37 PRK11057 ATP-dependent DNA hel 100.0 1.9E-47 4.1E-52 391.0 35.5 337 23-454 7-354 (607)
38 TIGR01389 recQ ATP-dependent D 100.0 1.3E-46 2.8E-51 386.6 34.3 332 31-454 3-342 (591)
39 PRK02362 ski2-like helicase; P 100.0 1.6E-46 3.5E-51 394.1 32.9 366 18-444 1-398 (737)
40 KOG4284 DEAD box protein [Tran 100.0 1.6E-47 3.5E-52 361.6 22.6 359 17-451 24-388 (980)
41 PRK13767 ATP-dependent helicas 100.0 1.2E-45 2.6E-50 390.5 34.7 360 25-441 18-396 (876)
42 KOG0344 ATP-dependent RNA heli 100.0 4.9E-46 1.1E-50 350.7 23.4 375 18-463 132-519 (593)
43 PRK00254 ski2-like helicase; P 100.0 7.4E-45 1.6E-49 380.6 33.9 364 19-451 2-397 (720)
44 COG1201 Lhr Lhr-like helicases 100.0 3.1E-44 6.8E-49 362.0 34.2 344 25-442 8-361 (814)
45 TIGR00580 mfd transcription-re 100.0 4.5E-44 9.7E-49 373.9 35.5 335 24-453 435-786 (926)
46 COG1111 MPH1 ERCC4-like helica 100.0 3.7E-44 8E-49 332.8 27.2 368 40-443 14-481 (542)
47 PRK01172 ski2-like helicase; P 100.0 1.5E-43 3.2E-48 369.5 33.7 367 18-452 1-388 (674)
48 COG0514 RecQ Superfamily II DN 100.0 9.6E-44 2.1E-48 345.9 28.2 337 28-455 4-349 (590)
49 PRK10917 ATP-dependent DNA hel 100.0 4.6E-43 1E-47 362.4 35.1 344 26-463 247-615 (681)
50 PRK10689 transcription-repair 100.0 4.5E-42 9.7E-47 366.6 36.5 334 25-453 585-935 (1147)
51 TIGR00643 recG ATP-dependent D 100.0 6.1E-42 1.3E-46 352.0 34.6 336 27-453 222-580 (630)
52 TIGR02621 cas3_GSU0051 CRISPR- 100.0 6E-42 1.3E-46 347.6 32.5 335 28-440 3-388 (844)
53 PRK09751 putative ATP-dependen 100.0 1.6E-40 3.5E-45 356.2 31.9 349 61-441 1-383 (1490)
54 COG1204 Superfamily II helicas 100.0 1.7E-39 3.6E-44 332.8 32.0 369 23-456 14-422 (766)
55 KOG0354 DEAD-box like helicase 100.0 4.4E-40 9.6E-45 323.8 25.6 371 41-444 62-530 (746)
56 KOG0329 ATP-dependent RNA heli 100.0 6.7E-41 1.5E-45 282.8 15.7 333 17-462 41-376 (387)
57 TIGR01970 DEAH_box_HrpB ATP-de 100.0 1.2E-38 2.5E-43 330.1 34.2 371 45-509 6-398 (819)
58 COG1202 Superfamily II helicas 100.0 7.9E-40 1.7E-44 306.4 22.1 347 15-443 191-553 (830)
59 PHA02653 RNA helicase NPH-II; 100.0 3.5E-39 7.7E-44 326.1 28.5 370 43-508 166-569 (675)
60 PRK11664 ATP-dependent RNA hel 100.0 3.2E-38 6.8E-43 327.8 31.2 370 46-509 10-401 (812)
61 PHA02558 uvsW UvsW helicase; P 100.0 8.7E-39 1.9E-43 320.7 25.2 333 41-441 114-450 (501)
62 PRK09401 reverse gyrase; Revie 100.0 2.3E-37 4.9E-42 331.4 32.9 323 27-430 67-431 (1176)
63 PRK14701 reverse gyrase; Provi 100.0 1.6E-37 3.4E-42 339.3 31.2 349 27-453 66-466 (1638)
64 KOG0952 DNA/RNA helicase MER3/ 100.0 8.4E-38 1.8E-42 311.3 25.2 395 35-481 104-529 (1230)
65 COG1205 Distinct helicase fami 100.0 4.2E-37 9E-42 319.8 30.7 352 25-441 55-420 (851)
66 PRK12898 secA preprotein trans 100.0 1.4E-36 2.9E-41 302.1 30.1 337 35-444 98-587 (656)
67 TIGR01587 cas3_core CRISPR-ass 100.0 9.5E-37 2.1E-41 296.6 26.1 304 58-444 1-337 (358)
68 PRK13766 Hef nuclease; Provisi 100.0 2.5E-36 5.4E-41 321.4 29.8 358 41-443 15-479 (773)
69 KOG0351 ATP-dependent DNA heli 100.0 1.7E-36 3.6E-41 312.6 26.8 341 27-455 250-604 (941)
70 TIGR01054 rgy reverse gyrase. 100.0 8.9E-36 1.9E-40 319.6 33.4 308 27-415 65-409 (1171)
71 KOG0352 ATP-dependent DNA heli 100.0 6.7E-37 1.5E-41 276.9 20.6 346 27-454 5-373 (641)
72 KOG0349 Putative DEAD-box RNA 100.0 4.5E-37 9.7E-42 278.5 17.8 320 96-447 289-619 (725)
73 PRK09200 preprotein translocas 100.0 8.1E-36 1.8E-40 303.1 28.7 341 32-444 70-542 (790)
74 TIGR00603 rad25 DNA repair hel 100.0 2.9E-36 6.4E-41 303.2 22.5 332 41-444 255-608 (732)
75 TIGR03714 secA2 accessory Sec 100.0 1.9E-34 4.2E-39 290.1 34.5 336 37-444 67-538 (762)
76 COG1200 RecG RecG-like helicas 100.0 1.5E-34 3.3E-39 280.7 32.3 361 18-463 240-617 (677)
77 TIGR03158 cas3_cyano CRISPR-as 100.0 1.8E-34 3.9E-39 276.9 30.2 313 45-428 1-357 (357)
78 TIGR00963 secA preprotein tran 100.0 2.3E-34 5.1E-39 287.6 30.6 340 32-444 48-518 (745)
79 KOG0353 ATP-dependent DNA heli 100.0 3.1E-34 6.7E-39 256.1 23.3 337 21-447 74-471 (695)
80 KOG0951 RNA helicase BRR2, DEA 100.0 1E-33 2.2E-38 285.7 21.2 401 23-477 294-736 (1674)
81 PRK11131 ATP-dependent RNA hel 100.0 7.4E-32 1.6E-36 284.8 32.9 369 43-509 76-473 (1294)
82 COG1061 SSL2 DNA or RNA helica 100.0 3.2E-33 6.9E-38 274.7 20.0 326 41-429 36-375 (442)
83 PRK04914 ATP-dependent helicas 100.0 2.2E-32 4.7E-37 285.1 25.5 375 41-463 152-626 (956)
84 PRK05580 primosome assembly pr 100.0 2.3E-31 5E-36 274.2 32.2 338 41-444 144-550 (679)
85 KOG0947 Cytoplasmic exosomal R 100.0 2.1E-32 4.6E-37 269.9 22.6 374 31-443 288-723 (1248)
86 TIGR01967 DEAH_box_HrpA ATP-de 100.0 5.6E-31 1.2E-35 279.3 34.0 368 47-509 73-466 (1283)
87 COG1197 Mfd Transcription-repa 100.0 6.4E-31 1.4E-35 269.6 30.7 337 22-453 576-929 (1139)
88 COG4581 Superfamily II RNA hel 100.0 4.4E-31 9.5E-36 270.8 25.6 367 35-441 114-535 (1041)
89 KOG0948 Nuclear exosomal RNA h 100.0 6.4E-32 1.4E-36 260.3 17.9 376 35-452 124-549 (1041)
90 PRK09694 helicase Cas3; Provis 100.0 5.8E-30 1.3E-34 265.4 31.1 340 40-432 285-664 (878)
91 TIGR00595 priA primosomal prot 100.0 4.5E-30 9.7E-35 255.3 24.2 305 60-440 1-378 (505)
92 cd00268 DEADc DEAD-box helicas 100.0 4.2E-29 9.2E-34 223.0 24.4 202 20-243 1-202 (203)
93 PRK13104 secA preprotein trans 100.0 1.9E-28 4E-33 248.8 31.1 372 36-444 78-588 (896)
94 PRK11448 hsdR type I restricti 100.0 1.2E-29 2.7E-34 270.6 23.0 358 41-441 413-813 (1123)
95 PRK12904 preprotein translocas 100.0 6.7E-28 1.5E-32 244.6 29.2 337 35-444 76-574 (830)
96 COG4098 comFA Superfamily II D 100.0 1.6E-27 3.4E-32 210.9 27.5 304 41-442 97-415 (441)
97 PRK12906 secA preprotein trans 100.0 4.9E-28 1.1E-32 244.6 27.5 341 31-444 71-554 (796)
98 KOG0950 DNA polymerase theta/e 100.0 4.4E-29 9.6E-34 248.2 18.8 384 25-454 207-622 (1008)
99 PRK12899 secA preprotein trans 100.0 5.8E-27 1.3E-31 237.4 31.3 152 20-184 64-230 (970)
100 KOG0922 DEAH-box RNA helicase 100.0 8E-27 1.7E-31 224.8 26.8 381 43-510 53-453 (674)
101 PLN03142 Probable chromatin-re 100.0 3.2E-27 6.8E-32 247.4 25.5 349 41-439 169-593 (1033)
102 COG1643 HrpA HrpA-like helicas 100.0 9.3E-26 2E-30 230.5 29.7 380 43-510 52-451 (845)
103 PRK13107 preprotein translocas 99.9 1.7E-25 3.6E-30 226.7 28.7 373 36-444 78-592 (908)
104 PF00270 DEAD: DEAD/DEAH box h 99.9 1.9E-25 4.1E-30 193.5 20.0 167 43-231 1-168 (169)
105 COG1203 CRISPR-associated heli 99.9 1E-24 2.2E-29 227.3 25.3 328 42-444 196-551 (733)
106 COG1110 Reverse gyrase [DNA re 99.9 6.3E-24 1.4E-28 212.9 28.7 304 27-414 69-416 (1187)
107 KOG0949 Predicted helicase, DE 99.9 1E-24 2.2E-29 216.4 20.2 164 38-228 509-674 (1330)
108 KOG0923 mRNA splicing factor A 99.9 7.5E-24 1.6E-28 202.4 23.9 379 42-506 266-666 (902)
109 COG4096 HsdR Type I site-speci 99.9 1.5E-23 3.3E-28 207.0 24.8 334 41-430 165-525 (875)
110 TIGR00348 hsdR type I site-spe 99.9 3.9E-24 8.5E-29 220.7 19.4 343 42-430 239-634 (667)
111 COG0556 UvrB Helicase subunit 99.9 4.5E-23 9.7E-28 193.2 24.1 127 296-442 425-556 (663)
112 COG1198 PriA Primosomal protei 99.9 4.8E-23 1E-27 207.7 25.3 343 41-453 198-613 (730)
113 KOG0385 Chromatin remodeling c 99.9 9.3E-23 2E-27 198.2 25.4 348 41-443 167-599 (971)
114 KOG0920 ATP-dependent RNA heli 99.9 4.5E-23 9.7E-28 210.0 23.9 353 42-446 174-547 (924)
115 TIGR00631 uvrb excinuclease AB 99.9 4.9E-22 1.1E-26 202.6 27.3 127 299-445 424-555 (655)
116 KOG1123 RNA polymerase II tran 99.9 6E-24 1.3E-28 196.9 11.3 349 9-431 273-635 (776)
117 KOG0924 mRNA splicing factor A 99.9 2.6E-22 5.7E-27 192.4 20.1 323 42-443 357-697 (1042)
118 KOG0925 mRNA splicing factor A 99.9 4.7E-21 1E-25 177.3 26.7 345 12-443 19-387 (699)
119 PRK12326 preprotein translocas 99.9 3.2E-21 6.8E-26 191.2 26.1 337 35-444 73-548 (764)
120 KOG0390 DNA repair protein, SN 99.9 6.8E-21 1.5E-25 191.0 27.4 373 41-456 238-723 (776)
121 KOG0387 Transcription-coupled 99.9 3.9E-21 8.5E-26 187.9 20.8 359 41-453 205-671 (923)
122 PRK12900 secA preprotein trans 99.9 4.8E-21 1E-25 195.3 21.8 124 300-444 581-712 (1025)
123 TIGR01407 dinG_rel DnaQ family 99.9 6.3E-20 1.4E-24 195.7 29.0 123 303-442 659-813 (850)
124 PRK05298 excinuclease ABC subu 99.9 7E-20 1.5E-24 188.5 28.3 123 300-442 429-556 (652)
125 KOG4150 Predicted ATP-dependen 99.9 1.1E-21 2.4E-26 184.7 13.3 368 28-453 273-652 (1034)
126 PRK13103 secA preprotein trans 99.9 2E-20 4.2E-25 190.3 22.4 336 36-444 78-592 (913)
127 KOG0384 Chromodomain-helicase 99.9 4E-21 8.6E-26 195.8 16.5 362 40-452 369-822 (1373)
128 KOG0392 SNF2 family DNA-depend 99.9 4.4E-20 9.5E-25 187.7 23.4 393 41-472 975-1496(1549)
129 KOG0926 DEAH-box RNA helicase 99.9 2.7E-20 5.9E-25 181.7 20.0 337 48-443 263-704 (1172)
130 PRK07246 bifunctional ATP-depe 99.8 1.2E-18 2.6E-23 183.2 31.4 145 302-468 632-813 (820)
131 smart00487 DEXDc DEAD-like hel 99.8 2.3E-19 4.9E-24 160.0 21.4 187 37-247 4-192 (201)
132 KOG1000 Chromatin remodeling p 99.8 9.3E-20 2E-24 169.2 19.1 347 39-439 196-597 (689)
133 PRK12903 secA preprotein trans 99.8 2.4E-18 5.2E-23 173.3 26.8 336 35-444 73-540 (925)
134 COG4889 Predicted helicase [Ge 99.8 1.7E-20 3.8E-25 184.5 7.4 381 19-431 141-573 (1518)
135 CHL00122 secA preprotein trans 99.8 1.5E-17 3.3E-22 168.7 26.1 134 33-181 69-208 (870)
136 KOG0389 SNF2 family DNA-depend 99.8 3.4E-19 7.3E-24 174.3 12.5 138 300-456 760-902 (941)
137 KOG0951 RNA helicase BRR2, DEA 99.8 2E-18 4.2E-23 176.2 17.4 368 5-459 1112-1510(1674)
138 cd00079 HELICc Helicase superf 99.8 1.4E-18 3.1E-23 143.4 12.8 121 300-439 11-131 (131)
139 PRK12902 secA preprotein trans 99.8 2.7E-16 5.9E-21 159.3 27.4 131 36-181 81-217 (939)
140 PRK08074 bifunctional ATP-depe 99.8 9.4E-16 2E-20 164.5 30.5 124 303-442 737-892 (928)
141 PF00271 Helicase_C: Helicase 99.8 3.1E-18 6.7E-23 126.8 7.8 72 360-431 7-78 (78)
142 PF04851 ResIII: Type III rest 99.7 9.4E-18 2E-22 147.4 11.4 154 41-226 3-183 (184)
143 KOG0953 Mitochondrial RNA heli 99.7 1.5E-16 3.3E-21 150.2 17.8 281 57-453 192-486 (700)
144 cd00046 DEXDc DEAD-like helica 99.7 3.1E-16 6.7E-21 131.4 17.2 144 57-225 1-144 (144)
145 TIGR03117 cas_csf4 CRISPR-asso 99.7 1.3E-14 2.9E-19 146.0 30.1 91 305-415 457-561 (636)
146 KOG4439 RNA polymerase II tran 99.7 1.7E-15 3.6E-20 146.8 18.6 142 297-456 725-872 (901)
147 TIGR02562 cas3_yersinia CRISPR 99.7 1.7E-14 3.6E-19 148.8 22.4 350 42-433 409-882 (1110)
148 KOG0386 Chromatin remodeling c 99.6 1.1E-15 2.3E-20 153.8 12.7 351 41-441 394-834 (1157)
149 PRK14873 primosome assembly pr 99.6 2.3E-14 4.9E-19 146.3 21.5 313 60-444 164-540 (665)
150 PRK11747 dinG ATP-dependent DN 99.6 4.5E-13 9.8E-18 139.5 29.4 119 302-442 519-673 (697)
151 smart00490 HELICc helicase sup 99.6 1.8E-15 3.9E-20 113.5 8.2 72 360-431 11-82 (82)
152 KOG1002 Nucleotide excision re 99.6 7.2E-14 1.6E-18 130.4 19.1 142 297-455 616-762 (791)
153 KOG0388 SNF2 family DNA-depend 99.6 3E-14 6.5E-19 138.2 17.2 122 299-439 1026-1148(1185)
154 COG1199 DinG Rad3-related DNA 99.6 4.1E-13 8.9E-18 141.1 26.7 120 302-441 463-615 (654)
155 PRK12901 secA preprotein trans 99.6 1E-13 2.2E-18 142.4 21.0 125 299-444 610-742 (1112)
156 TIGR00604 rad3 DNA repair heli 99.6 7.4E-13 1.6E-17 139.1 27.5 76 36-117 5-84 (705)
157 KOG0391 SNF2 family DNA-depend 99.5 2.3E-12 5E-17 131.4 23.0 121 300-439 1259-1381(1958)
158 PF02399 Herpes_ori_bp: Origin 99.5 2E-12 4.4E-17 130.3 20.2 321 58-443 51-388 (824)
159 COG0553 HepA Superfamily II DN 99.5 1.4E-12 3E-17 142.9 19.8 120 301-439 692-816 (866)
160 COG0610 Type I site-specific r 99.5 2.6E-12 5.7E-17 137.3 20.9 341 57-430 274-636 (962)
161 KOG1015 Transcription regulato 99.5 8.9E-13 1.9E-17 131.9 15.6 138 300-439 1125-1271(1567)
162 PF06862 DUF1253: Protein of u 99.5 1E-10 2.2E-15 112.3 27.9 315 92-452 36-424 (442)
163 PF00176 SNF2_N: SNF2 family N 99.3 1.4E-11 2.9E-16 117.3 12.5 155 45-227 1-174 (299)
164 PF07652 Flavi_DEAD: Flaviviru 99.3 7.2E-12 1.6E-16 99.7 8.4 137 55-229 3-140 (148)
165 smart00488 DEXDc2 DEAD-like he 99.3 6.5E-11 1.4E-15 110.2 14.0 76 37-116 5-84 (289)
166 smart00489 DEXDc3 DEAD-like he 99.3 6.5E-11 1.4E-15 110.2 14.0 76 37-116 5-84 (289)
167 COG0653 SecA Preprotein transl 99.2 3.9E-10 8.4E-15 114.9 18.5 334 38-444 78-546 (822)
168 KOG0921 Dosage compensation co 99.1 9.2E-10 2E-14 110.3 14.6 350 48-443 385-774 (1282)
169 PRK15483 type III restriction- 99.1 2.8E-08 6.1E-13 103.8 25.2 68 386-453 501-578 (986)
170 KOG2340 Uncharacterized conser 99.1 6E-09 1.3E-13 98.9 17.1 368 40-451 215-676 (698)
171 PF07517 SecA_DEAD: SecA DEAD- 99.1 7.2E-09 1.6E-13 93.7 16.6 136 32-182 69-210 (266)
172 KOG1016 Predicted DNA helicase 99.0 2.8E-08 6.2E-13 98.3 16.5 127 318-444 718-848 (1387)
173 COG3587 Restriction endonuclea 98.8 5E-07 1.1E-11 91.2 21.2 69 385-453 482-563 (985)
174 KOG0952 DNA/RNA helicase MER3/ 98.7 5.5E-09 1.2E-13 106.9 3.9 168 42-229 928-1097(1230)
175 TIGR00596 rad1 DNA repair prot 98.6 2.1E-07 4.5E-12 97.4 11.8 70 142-227 5-74 (814)
176 PF02562 PhoH: PhoH-like prote 98.6 3.8E-07 8.2E-12 79.2 9.3 59 40-105 3-61 (205)
177 PF13086 AAA_11: AAA domain; P 98.5 4.3E-07 9.3E-12 82.9 9.7 73 42-115 2-75 (236)
178 KOG1133 Helicase of the DEAD s 98.5 0.00011 2.3E-09 73.2 26.3 126 303-442 614-779 (821)
179 PF13872 AAA_34: P-loop contai 98.5 1.5E-06 3.2E-11 78.9 11.0 157 41-227 37-222 (303)
180 PF13307 Helicase_C_2: Helicas 98.4 9.8E-07 2.1E-11 75.3 8.0 108 318-442 8-149 (167)
181 PF13604 AAA_30: AAA domain; P 98.4 4.7E-06 1E-10 73.2 12.4 63 41-112 1-65 (196)
182 KOG1001 Helicase-like transcri 98.4 1E-06 2.2E-11 90.2 8.5 118 320-454 540-662 (674)
183 PRK10536 hypothetical protein; 98.3 2.4E-05 5.2E-10 70.0 13.8 61 37-104 55-115 (262)
184 PRK10875 recD exonuclease V su 98.2 3.2E-05 6.9E-10 79.3 14.1 85 28-117 138-223 (615)
185 KOG1802 RNA helicase nonsense 98.2 6.7E-06 1.4E-10 80.9 8.5 73 36-116 405-477 (935)
186 KOG1803 DNA helicase [Replicat 98.1 9.9E-06 2.2E-10 79.3 8.9 65 41-114 185-250 (649)
187 PF13245 AAA_19: Part of AAA d 98.1 1.9E-05 4.1E-10 57.0 7.7 60 49-113 2-62 (76)
188 PF09848 DUF2075: Uncharacteri 98.1 1.7E-05 3.7E-10 76.7 9.8 96 58-184 3-98 (352)
189 TIGR01447 recD exodeoxyribonuc 98.1 7E-05 1.5E-09 76.6 13.8 134 43-199 147-285 (586)
190 KOG1132 Helicase of the DEAD s 98.1 2.4E-05 5.2E-10 79.8 10.2 81 36-117 17-134 (945)
191 TIGR01448 recD_rel helicase, p 98.0 5.4E-05 1.2E-09 79.8 13.0 71 32-110 315-385 (720)
192 PF12340 DUF3638: Protein of u 97.9 0.00051 1.1E-08 60.4 14.7 128 18-159 3-145 (229)
193 PF13401 AAA_22: AAA domain; P 97.8 0.00057 1.2E-08 55.8 12.0 27 55-81 3-29 (131)
194 COG3421 Uncharacterized protei 97.8 3.6E-05 7.8E-10 75.2 5.4 116 61-184 2-127 (812)
195 PF00580 UvrD-helicase: UvrD/R 97.6 0.00027 5.9E-09 67.6 8.5 124 42-179 1-125 (315)
196 TIGR02768 TraA_Ti Ti-type conj 97.5 0.0013 2.9E-08 69.7 13.6 63 38-110 350-413 (744)
197 TIGR00376 DNA helicase, putati 97.5 0.00032 7E-09 72.9 8.8 66 41-115 157-223 (637)
198 smart00492 HELICc3 helicase su 97.5 0.00056 1.2E-08 56.2 8.5 47 369-415 30-79 (141)
199 PRK06526 transposase; Provisio 97.5 0.00038 8.3E-09 63.5 8.1 31 53-83 95-125 (254)
200 PF05970 PIF1: PIF1-like helic 97.5 0.00063 1.4E-08 66.1 9.4 59 42-109 2-66 (364)
201 KOG1131 RNA polymerase II tran 97.4 0.0015 3.4E-08 63.0 11.2 76 37-117 12-91 (755)
202 PRK04296 thymidine kinase; Pro 97.4 0.00039 8.5E-09 60.7 6.9 36 58-102 4-39 (190)
203 COG1875 NYN ribonuclease and A 97.4 0.00073 1.6E-08 62.6 8.7 66 35-107 222-290 (436)
204 PRK14722 flhF flagellar biosyn 97.4 0.0016 3.5E-08 62.4 11.4 64 19-82 82-163 (374)
205 PRK08181 transposase; Validate 97.4 0.0025 5.5E-08 58.5 12.1 57 43-109 89-149 (269)
206 PRK13889 conjugal transfer rel 97.4 0.0014 3.1E-08 70.7 11.8 63 37-109 343-406 (988)
207 smart00491 HELICc2 helicase su 97.4 0.00079 1.7E-08 55.4 7.8 69 373-441 31-137 (142)
208 cd00009 AAA The AAA+ (ATPases 97.3 0.0034 7.4E-08 52.1 11.1 24 56-79 19-42 (151)
209 PRK06921 hypothetical protein; 97.2 0.0052 1.1E-07 56.7 11.8 26 56-81 117-142 (266)
210 PRK07952 DNA replication prote 97.2 0.0048 1E-07 55.8 11.2 26 57-82 100-125 (244)
211 PRK14974 cell division protein 97.2 0.0043 9.2E-08 58.9 11.0 128 58-234 142-273 (336)
212 KOG1805 DNA replication helica 97.1 0.0024 5.2E-08 66.4 9.5 125 40-183 668-810 (1100)
213 COG1484 DnaC DNA replication p 97.1 0.002 4.4E-08 58.8 8.0 67 38-114 80-153 (254)
214 PRK13826 Dtr system oriT relax 97.1 0.011 2.3E-07 64.6 14.4 75 24-109 366-441 (1102)
215 PHA02533 17 large terminase pr 97.1 0.0067 1.4E-07 61.6 11.9 75 38-120 57-131 (534)
216 COG1419 FlhF Flagellar GTP-bin 97.0 0.022 4.8E-07 54.4 14.5 129 56-234 203-333 (407)
217 cd01124 KaiC KaiC is a circadi 97.0 0.011 2.4E-07 51.6 11.9 48 59-116 2-49 (187)
218 PRK06835 DNA replication prote 97.0 0.0088 1.9E-07 56.8 11.8 59 41-109 160-226 (329)
219 PRK06893 DNA replication initi 96.9 0.0057 1.2E-07 55.2 9.5 26 58-83 41-66 (229)
220 KOG0989 Replication factor C, 96.9 0.0042 9.1E-08 56.4 8.2 44 167-226 127-170 (346)
221 smart00382 AAA ATPases associa 96.9 0.0017 3.7E-08 53.5 5.6 42 56-106 2-43 (148)
222 PRK12723 flagellar biosynthesi 96.9 0.01 2.2E-07 57.6 11.4 123 57-227 175-299 (388)
223 PRK08727 hypothetical protein; 96.9 0.0066 1.4E-07 55.0 9.2 35 57-100 42-76 (233)
224 PRK11889 flhF flagellar biosyn 96.9 0.023 4.9E-07 54.5 12.8 127 57-235 242-373 (436)
225 COG2256 MGS1 ATPase related to 96.8 0.0054 1.2E-07 57.9 8.5 46 57-114 49-94 (436)
226 KOG0298 DEAD box-containing he 96.8 0.0035 7.5E-08 67.1 8.0 156 56-233 374-558 (1394)
227 cd01120 RecA-like_NTPases RecA 96.8 0.045 9.8E-07 46.3 13.9 38 59-105 2-39 (165)
228 PRK12377 putative replication 96.8 0.021 4.7E-07 51.8 12.2 44 57-110 102-145 (248)
229 PRK08116 hypothetical protein; 96.8 0.028 6E-07 52.0 13.1 24 58-81 116-139 (268)
230 TIGR02760 TraI_TIGR conjugativ 96.8 0.14 3.1E-06 60.4 21.3 65 38-112 427-493 (1960)
231 PRK05642 DNA replication initi 96.8 0.01 2.2E-07 53.7 9.7 31 169-199 97-128 (234)
232 PRK08084 DNA replication initi 96.7 0.017 3.7E-07 52.4 10.8 25 56-80 45-69 (235)
233 PRK00149 dnaA chromosomal repl 96.7 0.016 3.4E-07 58.3 11.3 45 57-109 149-193 (450)
234 PF00448 SRP54: SRP54-type pro 96.7 0.061 1.3E-06 47.1 13.6 25 59-83 4-28 (196)
235 PF00308 Bac_DnaA: Bacterial d 96.6 0.013 2.9E-07 52.3 9.3 46 169-228 97-143 (219)
236 TIGR03420 DnaA_homol_Hda DnaA 96.6 0.015 3.2E-07 52.5 9.6 26 55-80 37-62 (226)
237 TIGR00362 DnaA chromosomal rep 96.6 0.021 4.5E-07 56.7 11.0 37 57-100 137-173 (405)
238 PRK14088 dnaA chromosomal repl 96.6 0.023 4.9E-07 56.7 11.2 38 57-101 131-168 (440)
239 PRK05703 flhF flagellar biosyn 96.6 0.027 5.8E-07 55.7 11.5 26 56-81 221-246 (424)
240 PF03354 Terminase_1: Phage Te 96.5 0.01 2.3E-07 60.0 8.7 72 44-120 1-81 (477)
241 KOG0383 Predicted helicase [Ge 96.5 0.00032 7E-09 71.5 -2.2 79 301-399 615-696 (696)
242 PRK10919 ATP-dependent DNA hel 96.5 0.0084 1.8E-07 63.3 8.1 71 41-118 2-72 (672)
243 PF13871 Helicase_C_4: Helicas 96.5 0.0075 1.6E-07 55.0 6.7 64 377-440 52-124 (278)
244 PF05621 TniB: Bacterial TniB 96.5 0.044 9.6E-07 50.5 11.4 57 57-115 62-118 (302)
245 PRK14712 conjugal transfer nic 96.4 0.051 1.1E-06 61.6 13.9 63 41-110 835-901 (1623)
246 KOG0738 AAA+-type ATPase [Post 96.4 0.039 8.4E-07 52.0 10.9 171 16-248 181-384 (491)
247 PRK08903 DnaA regulatory inact 96.3 0.03 6.5E-07 50.6 9.6 27 55-81 41-67 (227)
248 TIGR02785 addA_Gpos recombinat 96.3 0.038 8.2E-07 62.6 12.1 123 42-180 2-126 (1232)
249 PRK14087 dnaA chromosomal repl 96.3 0.033 7.1E-07 55.7 10.5 49 57-113 142-190 (450)
250 PHA02544 44 clamp loader, smal 96.2 0.061 1.3E-06 51.4 11.9 48 15-78 15-65 (316)
251 COG3973 Superfamily I DNA and 96.2 0.039 8.5E-07 54.9 10.4 61 55-118 225-285 (747)
252 PF13173 AAA_14: AAA domain 96.2 0.06 1.3E-06 43.6 10.1 25 56-80 2-26 (128)
253 TIGR01075 uvrD DNA helicase II 96.2 0.013 2.9E-07 62.5 7.9 72 40-118 3-74 (715)
254 PF05127 Helicase_RecD: Helica 96.2 0.0012 2.5E-08 56.1 -0.1 123 60-226 1-124 (177)
255 PRK11054 helD DNA helicase IV; 96.2 0.028 6.2E-07 59.0 9.9 70 41-117 196-265 (684)
256 PRK09183 transposase/IS protei 96.2 0.053 1.2E-06 49.9 10.6 45 53-107 99-143 (259)
257 COG2805 PilT Tfp pilus assembl 96.2 0.02 4.4E-07 52.0 7.5 25 58-83 127-151 (353)
258 PRK12422 chromosomal replicati 96.2 0.043 9.2E-07 54.7 10.6 35 57-100 142-176 (445)
259 PHA03368 DNA packaging termina 96.1 0.16 3.6E-06 51.8 14.4 159 28-226 230-391 (738)
260 PRK11773 uvrD DNA-dependent he 96.1 0.015 3.3E-07 62.0 7.8 71 41-118 9-79 (721)
261 PRK11823 DNA repair protein Ra 96.1 0.038 8.2E-07 55.2 9.9 51 56-116 80-130 (446)
262 PLN03025 replication factor C 96.1 0.09 1.9E-06 50.2 12.2 24 57-80 35-58 (319)
263 COG1435 Tdk Thymidine kinase [ 96.1 0.019 4E-07 48.9 6.4 101 58-198 6-106 (201)
264 PF00004 AAA: ATPase family as 96.1 0.06 1.3E-06 43.7 9.5 21 59-79 1-21 (132)
265 KOG0739 AAA+-type ATPase [Post 96.1 0.11 2.4E-06 47.2 11.4 53 51-116 156-213 (439)
266 PF05876 Terminase_GpA: Phage 96.0 0.01 2.2E-07 60.8 5.6 124 41-182 16-147 (557)
267 cd01122 GP4d_helicase GP4d_hel 96.0 0.11 2.3E-06 48.4 12.1 55 52-115 26-80 (271)
268 COG4626 Phage terminase-like p 96.0 0.094 2E-06 52.2 11.7 150 41-224 61-224 (546)
269 TIGR01074 rep ATP-dependent DN 96.0 0.033 7.1E-07 59.2 9.5 70 42-118 2-71 (664)
270 PRK13709 conjugal transfer nic 96.0 0.08 1.7E-06 60.9 12.8 67 38-110 965-1033(1747)
271 PRK06731 flhF flagellar biosyn 96.0 0.13 2.8E-06 47.4 12.0 24 57-80 76-99 (270)
272 PRK13342 recombination factor 95.9 0.076 1.6E-06 52.7 11.2 20 58-77 38-57 (413)
273 PTZ00293 thymidine kinase; Pro 95.9 0.079 1.7E-06 46.4 9.8 39 56-103 4-42 (211)
274 cd01121 Sms Sms (bacterial rad 95.9 0.056 1.2E-06 52.3 9.8 51 55-115 81-131 (372)
275 PRK14086 dnaA chromosomal repl 95.9 0.06 1.3E-06 55.0 10.1 46 57-110 315-360 (617)
276 PRK08939 primosomal protein Dn 95.9 0.053 1.1E-06 51.1 9.3 27 56-82 156-182 (306)
277 TIGR02881 spore_V_K stage V sp 95.8 0.094 2E-06 48.5 10.7 23 57-79 43-65 (261)
278 TIGR03499 FlhF flagellar biosy 95.8 0.037 8E-07 51.7 8.0 25 57-81 195-219 (282)
279 COG1474 CDC6 Cdc6-related prot 95.8 0.12 2.7E-06 49.9 11.8 26 57-82 43-68 (366)
280 PF05496 RuvB_N: Holliday junc 95.8 0.028 6E-07 49.4 6.6 22 58-79 52-73 (233)
281 PRK00411 cdc6 cell division co 95.8 0.11 2.5E-06 51.3 12.0 23 57-79 56-78 (394)
282 PHA03333 putative ATPase subun 95.8 0.29 6.3E-06 50.3 14.3 71 42-120 170-243 (752)
283 PRK05707 DNA polymerase III su 95.8 0.068 1.5E-06 50.9 9.6 41 41-81 3-47 (328)
284 PF14617 CMS1: U3-containing 9 95.7 0.035 7.5E-07 50.1 6.8 86 92-180 125-212 (252)
285 PF01695 IstB_IS21: IstB-like 95.7 0.022 4.7E-07 49.1 5.4 45 54-108 45-89 (178)
286 PRK13341 recombination factor 95.7 0.1 2.2E-06 55.1 11.3 20 58-77 54-73 (725)
287 TIGR02760 TraI_TIGR conjugativ 95.6 0.14 3E-06 60.5 13.1 62 41-110 1019-1085(1960)
288 COG0593 DnaA ATPase involved i 95.6 0.15 3.2E-06 49.5 11.1 47 169-229 175-222 (408)
289 TIGR01547 phage_term_2 phage t 95.6 0.066 1.4E-06 53.0 9.1 145 58-235 3-150 (396)
290 KOG2028 ATPase related to the 95.5 0.042 9.1E-07 51.3 6.8 22 58-79 164-185 (554)
291 TIGR03015 pepcterm_ATPase puta 95.5 0.34 7.4E-06 45.0 13.3 35 42-76 24-63 (269)
292 PRK12402 replication factor C 95.5 0.14 3E-06 49.4 11.0 23 58-80 38-60 (337)
293 PRK04195 replication factor C 95.5 0.1 2.2E-06 53.0 10.3 24 56-79 39-62 (482)
294 COG1444 Predicted P-loop ATPas 95.5 0.16 3.5E-06 53.0 11.6 143 39-226 212-357 (758)
295 PRK00771 signal recognition pa 95.5 0.19 4.1E-06 49.8 11.8 23 58-80 97-119 (437)
296 PRK05973 replicative DNA helic 95.4 0.032 6.9E-07 50.1 5.8 84 22-116 22-114 (237)
297 TIGR01073 pcrA ATP-dependent D 95.4 0.05 1.1E-06 58.4 8.1 71 41-118 4-74 (726)
298 PRK08533 flagellar accessory p 95.4 0.23 5.1E-06 44.8 11.2 51 54-114 22-72 (230)
299 PRK08769 DNA polymerase III su 95.4 0.18 3.9E-06 47.7 10.7 42 40-81 3-51 (319)
300 PRK14956 DNA polymerase III su 95.4 0.19 4E-06 50.0 11.2 22 59-80 43-64 (484)
301 PRK13833 conjugal transfer pro 95.3 0.14 3.1E-06 48.4 10.0 57 42-105 129-186 (323)
302 COG2909 MalT ATP-dependent tra 95.3 0.078 1.7E-06 55.2 8.8 137 55-227 36-172 (894)
303 TIGR02928 orc1/cdc6 family rep 95.3 0.19 4E-06 49.2 11.4 23 57-79 41-63 (365)
304 PRK05580 primosome assembly pr 95.3 0.12 2.6E-06 54.7 10.5 97 298-413 171-267 (679)
305 PRK07003 DNA polymerase III su 95.3 0.12 2.5E-06 54.0 9.8 22 59-80 41-62 (830)
306 TIGR00595 priA primosomal prot 95.3 0.12 2.5E-06 52.6 9.8 95 299-412 7-101 (505)
307 PRK14723 flhF flagellar biosyn 95.3 0.28 6E-06 51.7 12.6 24 57-80 186-209 (767)
308 PTZ00112 origin recognition co 95.3 0.34 7.3E-06 51.4 13.0 20 59-78 784-803 (1164)
309 TIGR02880 cbbX_cfxQ probable R 95.2 0.26 5.6E-06 46.1 11.4 24 56-79 58-81 (284)
310 PRK06995 flhF flagellar biosyn 95.2 0.37 8.1E-06 48.2 12.9 89 57-156 257-347 (484)
311 PRK14873 primosome assembly pr 95.2 0.14 3E-06 53.6 10.3 123 299-441 170-300 (665)
312 CHL00181 cbbX CbbX; Provisiona 95.2 0.27 5.8E-06 46.0 11.4 25 56-80 59-83 (287)
313 PF13177 DNA_pol3_delta2: DNA 95.1 0.12 2.6E-06 43.8 8.1 26 58-83 21-46 (162)
314 COG0552 FtsY Signal recognitio 95.1 0.57 1.2E-05 43.8 12.8 134 59-234 142-278 (340)
315 PRK12727 flagellar biosynthesi 95.1 0.21 4.5E-06 50.1 10.7 63 19-81 300-375 (559)
316 PRK12724 flagellar biosynthesi 95.1 0.31 6.6E-06 47.6 11.6 23 58-80 225-247 (432)
317 PRK13894 conjugal transfer ATP 95.1 0.14 3.1E-06 48.5 9.2 57 42-105 133-190 (319)
318 PRK10917 ATP-dependent DNA hel 95.1 0.1 2.3E-06 55.3 9.3 99 299-412 292-391 (681)
319 PRK14958 DNA polymerase III su 95.1 0.081 1.8E-06 53.7 8.0 23 58-80 40-62 (509)
320 TIGR00064 ftsY signal recognit 95.0 0.74 1.6E-05 42.7 13.6 24 58-81 74-97 (272)
321 PRK12726 flagellar biosynthesi 95.0 0.11 2.3E-06 49.9 8.0 26 56-81 206-231 (407)
322 PRK11034 clpA ATP-dependent Cl 95.0 0.25 5.4E-06 52.6 11.5 24 56-79 207-230 (758)
323 KOG0701 dsRNA-specific nucleas 94.9 0.013 2.8E-07 65.4 2.1 95 320-430 293-398 (1606)
324 PRK06067 flagellar accessory p 94.9 0.26 5.6E-06 44.7 10.2 51 55-115 24-74 (234)
325 KOG0991 Replication factor C, 94.9 0.048 1E-06 47.6 4.9 24 58-81 50-73 (333)
326 PRK03992 proteasome-activating 94.9 0.24 5.2E-06 48.6 10.6 23 56-78 165-187 (389)
327 KOG1513 Nuclear helicase MOP-3 94.9 0.016 3.4E-07 59.2 2.3 55 379-433 850-912 (1300)
328 PRK11331 5-methylcytosine-spec 94.8 0.17 3.7E-06 49.7 9.0 36 42-77 180-215 (459)
329 PF03796 DnaB_C: DnaB-like hel 94.8 0.15 3.2E-06 47.1 8.4 131 55-198 18-163 (259)
330 TIGR02012 tigrfam_recA protein 94.8 0.073 1.6E-06 50.2 6.3 44 55-107 54-97 (321)
331 PRK14964 DNA polymerase III su 94.7 0.16 3.4E-06 50.9 8.9 23 57-79 36-58 (491)
332 COG1219 ClpX ATP-dependent pro 94.7 0.024 5.3E-07 51.9 2.8 61 16-77 42-118 (408)
333 cd00984 DnaB_C DnaB helicase C 94.7 0.27 5.7E-06 44.9 9.8 40 54-101 11-50 (242)
334 TIGR01425 SRP54_euk signal rec 94.7 0.29 6.3E-06 48.1 10.4 22 59-80 103-124 (429)
335 PRK14960 DNA polymerase III su 94.7 0.12 2.6E-06 53.2 7.9 23 58-80 39-61 (702)
336 TIGR02688 conserved hypothetic 94.6 0.16 3.5E-06 49.3 8.3 29 51-79 204-232 (449)
337 TIGR03881 KaiC_arch_4 KaiC dom 94.6 0.39 8.4E-06 43.4 10.6 38 55-101 19-56 (229)
338 COG4962 CpaF Flp pilus assembl 94.6 0.085 1.8E-06 49.3 6.1 62 36-107 152-214 (355)
339 PRK07994 DNA polymerase III su 94.6 0.46 1E-05 49.4 12.0 23 59-81 41-63 (647)
340 PF00265 TK: Thymidine kinase; 94.6 0.087 1.9E-06 45.1 5.8 37 59-104 4-40 (176)
341 PTZ00454 26S protease regulato 94.6 0.36 7.7E-06 47.4 10.8 59 16-77 140-200 (398)
342 COG3972 Superfamily I DNA and 94.5 0.22 4.8E-06 48.6 8.9 80 28-117 151-230 (660)
343 cd00983 recA RecA is a bacter 94.5 0.07 1.5E-06 50.3 5.6 43 56-107 55-97 (325)
344 KOG0741 AAA+-type ATPase [Post 94.5 0.66 1.4E-05 45.9 12.0 70 22-103 493-574 (744)
345 COG1198 PriA Primosomal protei 94.4 0.12 2.5E-06 54.2 7.4 96 296-410 224-319 (730)
346 PRK09354 recA recombinase A; P 94.4 0.097 2.1E-06 49.8 6.2 43 56-107 60-102 (349)
347 TIGR03877 thermo_KaiC_1 KaiC d 94.4 0.078 1.7E-06 48.2 5.4 52 55-116 20-71 (237)
348 PRK06645 DNA polymerase III su 94.4 0.51 1.1E-05 47.8 11.5 23 58-80 45-67 (507)
349 KOG0741 AAA+-type ATPase [Post 94.3 0.2 4.3E-06 49.3 8.2 59 14-75 212-275 (744)
350 COG0470 HolB ATPase involved i 94.3 0.3 6.6E-06 46.8 9.8 28 56-83 23-51 (325)
351 TIGR01243 CDC48 AAA family ATP 94.3 0.35 7.6E-06 52.0 11.1 60 17-79 449-510 (733)
352 CHL00176 ftsH cell division pr 94.3 0.36 7.9E-06 50.4 10.7 23 56-78 216-238 (638)
353 PRK06904 replicative DNA helic 94.3 0.42 9.1E-06 48.1 10.8 136 51-199 216-368 (472)
354 PRK06964 DNA polymerase III su 94.3 0.39 8.5E-06 45.9 10.0 40 42-81 2-46 (342)
355 PRK08691 DNA polymerase III su 94.2 0.27 5.8E-06 51.1 9.4 23 58-80 40-62 (709)
356 PRK09111 DNA polymerase III su 94.2 0.32 6.9E-06 50.4 10.0 24 58-81 48-71 (598)
357 PRK05563 DNA polymerase III su 94.2 0.36 7.8E-06 49.8 10.4 23 58-80 40-62 (559)
358 TIGR00643 recG ATP-dependent D 94.2 0.2 4.3E-06 52.8 8.7 99 299-412 266-365 (630)
359 PRK05986 cob(I)alamin adenolsy 94.2 0.38 8.3E-06 41.4 8.9 40 55-103 21-60 (191)
360 PRK10416 signal recognition pa 94.2 1.4 3.1E-05 41.8 13.6 24 57-80 115-138 (318)
361 PRK14962 DNA polymerase III su 94.2 0.54 1.2E-05 47.3 11.4 23 58-80 38-60 (472)
362 TIGR01243 CDC48 AAA family ATP 94.2 0.35 7.6E-06 52.0 10.7 59 15-76 172-232 (733)
363 TIGR02782 TrbB_P P-type conjug 94.2 0.16 3.4E-06 47.8 7.2 57 42-105 117-174 (299)
364 TIGR01241 FtsH_fam ATP-depende 94.2 0.31 6.8E-06 49.7 9.9 59 16-77 50-109 (495)
365 KOG0733 Nuclear AAA ATPase (VC 94.1 0.79 1.7E-05 46.2 11.9 61 16-79 506-568 (802)
366 PF05729 NACHT: NACHT domain 94.0 0.46 1E-05 40.1 9.4 46 58-107 2-47 (166)
367 PRK08840 replicative DNA helic 94.0 0.46 9.9E-06 47.7 10.4 139 48-199 209-363 (464)
368 PRK06090 DNA polymerase III su 93.9 0.5 1.1E-05 44.7 10.0 41 41-81 3-50 (319)
369 PRK14961 DNA polymerase III su 93.9 0.23 5E-06 48.3 8.0 22 59-80 41-62 (363)
370 TIGR00708 cobA cob(I)alamin ad 93.9 0.51 1.1E-05 40.0 8.9 33 58-99 7-39 (173)
371 PRK14963 DNA polymerase III su 93.9 0.4 8.8E-06 48.6 9.8 22 59-80 39-60 (504)
372 TIGR01242 26Sp45 26S proteasom 93.8 0.58 1.3E-05 45.6 10.6 22 56-77 156-177 (364)
373 PRK12323 DNA polymerase III su 93.8 0.27 5.8E-06 50.6 8.3 24 58-81 40-63 (700)
374 PRK07764 DNA polymerase III su 93.8 0.13 2.8E-06 55.3 6.3 22 59-80 40-61 (824)
375 KOG0060 Long-chain acyl-CoA tr 93.7 0.095 2.1E-06 52.2 4.8 29 169-197 588-616 (659)
376 PRK14949 DNA polymerase III su 93.7 0.33 7.1E-06 51.8 9.0 22 59-80 41-62 (944)
377 COG2804 PulE Type II secretory 93.7 0.11 2.5E-06 51.1 5.3 39 42-81 242-282 (500)
378 TIGR03600 phage_DnaB phage rep 93.6 0.29 6.3E-06 48.8 8.4 44 49-100 187-230 (421)
379 PRK00440 rfc replication facto 93.6 0.9 1.9E-05 43.4 11.6 22 58-79 40-61 (319)
380 PRK06871 DNA polymerase III su 93.6 0.49 1.1E-05 44.9 9.2 40 42-81 3-49 (325)
381 cd00561 CobA_CobO_BtuR ATP:cor 93.5 0.36 7.8E-06 40.4 7.4 32 59-99 5-36 (159)
382 COG1222 RPT1 ATP-dependent 26S 93.5 0.93 2E-05 42.7 10.6 22 56-77 185-206 (406)
383 PRK07940 DNA polymerase III su 93.5 1.6 3.5E-05 42.8 12.9 24 57-80 37-60 (394)
384 COG1110 Reverse gyrase [DNA re 93.5 0.19 4E-06 53.5 6.6 70 316-396 122-191 (1187)
385 KOG0734 AAA+-type ATPase conta 93.4 1.3 2.7E-05 44.1 11.7 21 57-77 338-358 (752)
386 KOG2228 Origin recognition com 93.4 2.2 4.7E-05 40.0 12.6 60 154-226 123-182 (408)
387 PRK13900 type IV secretion sys 93.4 0.32 6.9E-06 46.5 7.8 20 54-73 158-177 (332)
388 PF06733 DEAD_2: DEAD_2; Inte 93.4 0.048 1E-06 46.9 2.0 44 139-183 114-159 (174)
389 COG0542 clpA ATP-binding subun 93.3 0.75 1.6E-05 48.5 10.8 38 58-105 523-560 (786)
390 PRK14952 DNA polymerase III su 93.3 0.17 3.7E-06 52.0 6.2 22 59-80 38-59 (584)
391 KOG0740 AAA+-type ATPase [Post 93.3 0.71 1.5E-05 45.0 10.0 24 57-80 187-210 (428)
392 PRK14950 DNA polymerase III su 93.3 0.9 2E-05 47.3 11.6 23 58-80 40-62 (585)
393 PRK09112 DNA polymerase III su 93.3 0.61 1.3E-05 44.9 9.6 24 58-81 47-70 (351)
394 PRK07471 DNA polymerase III su 93.3 0.63 1.4E-05 45.1 9.8 25 58-82 43-67 (365)
395 PF12846 AAA_10: AAA-like doma 93.3 0.14 3.1E-06 48.4 5.4 43 56-107 1-43 (304)
396 KOG0729 26S proteasome regulat 93.2 0.79 1.7E-05 41.1 9.2 58 18-77 174-232 (435)
397 TIGR02655 circ_KaiC circadian 93.2 0.77 1.7E-05 46.6 10.7 52 55-116 262-313 (484)
398 TIGR02639 ClpA ATP-dependent C 93.2 1.1 2.3E-05 48.3 12.2 26 56-81 203-228 (731)
399 PRK08699 DNA polymerase III su 93.2 1.4 3E-05 42.0 11.7 39 42-80 2-45 (325)
400 PRK14721 flhF flagellar biosyn 93.2 1.4 3.1E-05 43.3 12.0 25 56-80 191-215 (420)
401 PF03969 AFG1_ATPase: AFG1-lik 93.1 0.55 1.2E-05 45.4 9.0 45 169-228 127-171 (362)
402 TIGR03345 VI_ClpV1 type VI sec 93.1 1.1 2.5E-05 48.7 12.3 34 46-79 192-231 (852)
403 PRK05896 DNA polymerase III su 93.1 0.67 1.5E-05 47.6 9.9 23 58-80 40-62 (605)
404 TIGR00665 DnaB replicative DNA 93.0 0.6 1.3E-05 46.8 9.6 51 54-113 193-243 (434)
405 PRK14957 DNA polymerase III su 92.9 0.68 1.5E-05 47.3 9.7 22 59-80 41-62 (546)
406 TIGR00580 mfd transcription-re 92.9 0.5 1.1E-05 51.6 9.3 98 300-412 483-581 (926)
407 PRK04841 transcriptional regul 92.9 0.25 5.4E-06 54.9 7.3 41 171-226 123-163 (903)
408 PRK08006 replicative DNA helic 92.9 1 2.2E-05 45.3 10.9 149 52-223 220-384 (471)
409 PRK14965 DNA polymerase III su 92.9 2.1 4.5E-05 44.5 13.4 22 59-80 41-62 (576)
410 PRK08506 replicative DNA helic 92.9 0.46 9.9E-06 48.0 8.4 49 55-113 191-239 (472)
411 COG0466 Lon ATP-dependent Lon 92.8 0.42 9.1E-06 49.1 7.9 68 126-199 380-447 (782)
412 CHL00095 clpC Clp protease ATP 92.8 1.6 3.4E-05 47.6 12.9 26 56-81 200-225 (821)
413 PHA03372 DNA packaging termina 92.8 4.8 0.0001 41.1 14.9 155 28-225 178-337 (668)
414 PRK06321 replicative DNA helic 92.8 0.94 2E-05 45.6 10.4 129 55-198 225-372 (472)
415 TIGR03878 thermo_KaiC_2 KaiC d 92.8 0.24 5.2E-06 45.6 5.8 38 55-101 35-72 (259)
416 PRK14955 DNA polymerase III su 92.7 2.5 5.4E-05 41.8 13.2 24 58-81 40-63 (397)
417 PRK10867 signal recognition pa 92.7 0.84 1.8E-05 45.2 9.8 22 59-80 103-124 (433)
418 PRK08760 replicative DNA helic 92.7 0.72 1.6E-05 46.5 9.5 130 55-199 228-373 (476)
419 PRK04328 hypothetical protein; 92.7 0.22 4.8E-06 45.6 5.4 52 55-116 22-73 (249)
420 PRK13851 type IV secretion sys 92.7 0.2 4.3E-06 47.9 5.2 44 53-106 159-202 (344)
421 TIGR03346 chaperone_ClpB ATP-d 92.6 0.88 1.9E-05 49.8 10.8 24 57-80 195-218 (852)
422 PRK14959 DNA polymerase III su 92.6 0.65 1.4E-05 47.9 9.1 23 58-80 40-62 (624)
423 KOG0730 AAA+-type ATPase [Post 92.6 2 4.3E-05 43.9 12.1 61 16-79 429-491 (693)
424 PRK14970 DNA polymerase III su 92.6 2.1 4.5E-05 41.8 12.5 19 58-76 41-59 (367)
425 PRK14969 DNA polymerase III su 92.6 0.43 9.4E-06 48.8 7.8 22 59-80 41-62 (527)
426 TIGR00416 sms DNA repair prote 92.6 0.9 2E-05 45.5 9.9 51 55-115 93-143 (454)
427 PRK14948 DNA polymerase III su 92.5 2.4 5.3E-05 44.3 13.3 25 57-81 39-63 (620)
428 PF01637 Arch_ATPase: Archaeal 92.4 0.51 1.1E-05 42.5 7.5 19 56-74 20-38 (234)
429 PRK07004 replicative DNA helic 92.4 0.52 1.1E-05 47.4 8.0 133 53-199 210-358 (460)
430 cd01130 VirB11-like_ATPase Typ 92.3 0.23 5.1E-06 43.2 4.9 33 41-73 9-42 (186)
431 PRK14951 DNA polymerase III su 92.3 1.3 2.9E-05 45.9 11.0 22 59-80 41-62 (618)
432 COG2255 RuvB Holliday junction 92.3 0.37 8E-06 43.8 6.0 23 57-79 53-75 (332)
433 COG0467 RAD55 RecA-superfamily 92.2 0.29 6.2E-06 45.3 5.6 52 55-116 22-73 (260)
434 COG1221 PspF Transcriptional r 92.2 0.71 1.5E-05 44.8 8.3 24 54-77 99-122 (403)
435 KOG0737 AAA+-type ATPase [Post 92.2 1.9 4E-05 40.9 10.6 63 17-79 88-150 (386)
436 TIGR00678 holB DNA polymerase 92.2 0.62 1.3E-05 40.6 7.4 24 58-81 16-39 (188)
437 TIGR02640 gas_vesic_GvpN gas v 92.2 0.34 7.4E-06 44.8 6.0 30 48-77 13-42 (262)
438 PRK05595 replicative DNA helic 92.2 0.26 5.6E-06 49.5 5.6 49 55-112 200-248 (444)
439 PRK05748 replicative DNA helic 92.0 1.1 2.3E-05 45.2 9.8 133 53-198 200-348 (448)
440 TIGR00959 ffh signal recogniti 92.0 2.9 6.2E-05 41.5 12.4 24 58-81 101-124 (428)
441 PRK05636 replicative DNA helic 91.9 0.76 1.6E-05 46.6 8.6 27 55-81 264-290 (505)
442 PHA00350 putative assembly pro 91.9 1.1 2.4E-05 43.5 9.3 25 59-83 4-29 (399)
443 cd01129 PulE-GspE PulE/GspE Th 91.9 0.39 8.5E-06 44.3 6.0 34 42-75 64-99 (264)
444 COG2874 FlaH Predicted ATPases 91.9 3.2 6.9E-05 36.3 10.9 35 57-100 29-63 (235)
445 KOG2004 Mitochondrial ATP-depe 91.8 1.5 3.3E-05 45.2 10.3 48 147-198 487-534 (906)
446 PRK10865 protein disaggregatio 91.8 0.99 2.1E-05 49.3 9.8 24 57-80 200-223 (857)
447 PRK14953 DNA polymerase III su 91.8 2.8 6.1E-05 42.4 12.4 21 59-79 41-61 (486)
448 PF06745 KaiC: KaiC; InterPro 91.7 0.3 6.4E-06 44.1 5.0 53 55-116 18-70 (226)
449 PF01935 DUF87: Domain of unkn 91.7 0.26 5.6E-06 44.5 4.6 43 56-106 23-65 (229)
450 PRK05800 cobU adenosylcobinami 91.6 3 6.5E-05 35.6 10.7 48 58-117 3-50 (170)
451 TIGR03880 KaiC_arch_3 KaiC dom 91.6 0.4 8.7E-06 43.1 5.7 52 55-116 15-66 (224)
452 PF14516 AAA_35: AAA-like doma 91.6 0.96 2.1E-05 43.4 8.5 40 42-82 15-56 (331)
453 PRK07993 DNA polymerase III su 91.6 0.24 5.3E-06 47.3 4.4 40 41-80 2-48 (334)
454 TIGR03345 VI_ClpV1 type VI sec 91.5 1.1 2.3E-05 48.8 9.7 21 59-79 599-619 (852)
455 PF03237 Terminase_6: Terminas 91.5 1.9 4.1E-05 42.1 11.0 42 60-108 1-42 (384)
456 PRK09376 rho transcription ter 91.4 1.2 2.6E-05 43.1 8.7 40 43-83 153-195 (416)
457 PF01443 Viral_helicase1: Vira 91.4 0.24 5.1E-06 44.9 4.1 18 59-76 1-18 (234)
458 TIGR00767 rho transcription te 91.4 1.4 3E-05 42.8 9.2 26 55-81 167-192 (415)
459 TIGR02525 plasmid_TraJ plasmid 91.3 0.53 1.2E-05 45.6 6.5 26 55-81 148-173 (372)
460 TIGR02237 recomb_radB DNA repa 91.3 0.31 6.7E-06 43.3 4.7 39 55-102 11-49 (209)
461 PRK09165 replicative DNA helic 91.3 0.73 1.6E-05 46.8 7.7 122 55-182 216-354 (497)
462 PRK13695 putative NTPase; Prov 91.2 1.3 2.8E-05 38.0 8.3 20 58-77 2-21 (174)
463 KOG0745 Putative ATP-dependent 91.1 0.17 3.7E-06 48.5 2.8 22 56-77 226-247 (564)
464 KOG1807 Helicases [Replication 91.0 0.43 9.3E-06 49.1 5.6 71 42-115 379-449 (1025)
465 COG1200 RecG RecG-like helicas 90.9 0.96 2.1E-05 46.4 8.0 83 317-412 309-392 (677)
466 PRK07133 DNA polymerase III su 90.8 1.5 3.2E-05 46.3 9.4 22 59-80 43-64 (725)
467 cd01125 repA Hexameric Replica 90.8 3.2 7E-05 37.7 10.9 60 58-118 3-65 (239)
468 TIGR03743 SXT_TraD conjugative 90.7 0.56 1.2E-05 49.0 6.4 51 57-116 177-229 (634)
469 PRK10689 transcription-repair 90.7 1.3 2.7E-05 49.8 9.4 81 318-411 648-729 (1147)
470 PRK10436 hypothetical protein; 90.6 0.54 1.2E-05 47.0 6.0 38 43-81 203-242 (462)
471 PF10412 TrwB_AAD_bind: Type I 90.5 0.36 7.9E-06 47.4 4.6 47 54-109 13-59 (386)
472 COG3598 RepA RecA-family ATPas 90.4 2.9 6.4E-05 38.9 9.8 75 46-121 78-154 (402)
473 COG4178 ABC-type uncharacteriz 90.4 1.3 2.8E-05 45.3 8.5 29 168-196 532-560 (604)
474 PHA02542 41 41 helicase; Provi 90.3 1.2 2.5E-05 44.9 8.1 36 56-100 190-225 (473)
475 cd01128 rho_factor Transcripti 90.3 1.5 3.3E-05 39.9 8.2 21 53-73 13-33 (249)
476 TIGR00602 rad24 checkpoint pro 90.3 1.9 4.1E-05 44.9 9.7 21 57-77 111-131 (637)
477 cd01394 radB RadB. The archaea 90.3 0.43 9.3E-06 42.7 4.6 37 55-100 18-54 (218)
478 PF01078 Mg_chelatase: Magnesi 90.3 0.29 6.2E-06 42.7 3.3 20 54-73 20-39 (206)
479 PF06309 Torsin: Torsin; Inte 90.2 1.1 2.3E-05 35.7 6.1 60 57-117 52-113 (127)
480 PRK10263 DNA translocase FtsK; 90.2 1.8 3.9E-05 48.1 9.8 29 57-85 1011-1039(1355)
481 PF02456 Adeno_IVa2: Adenoviru 90.1 0.29 6.4E-06 44.8 3.3 39 59-104 90-128 (369)
482 cd01126 TraG_VirD4 The TraG/Tr 90.1 0.16 3.5E-06 49.9 1.9 47 58-115 1-47 (384)
483 PRK13764 ATPase; Provisional 90.1 0.62 1.4E-05 48.0 6.0 26 55-81 256-281 (602)
484 TIGR03754 conj_TOL_TraD conjug 90.0 1.1 2.3E-05 46.6 7.6 52 57-117 181-234 (643)
485 COG0513 SrmB Superfamily II DN 90.0 1.6 3.4E-05 44.7 8.9 92 303-410 81-180 (513)
486 PRK14954 DNA polymerase III su 90.0 2.8 6.1E-05 43.7 10.7 23 58-80 40-62 (620)
487 cd01127 TrwB Bacterial conjuga 90.0 0.3 6.5E-06 48.4 3.6 46 53-107 39-84 (410)
488 PF01580 FtsK_SpoIIIE: FtsK/Sp 89.9 0.66 1.4E-05 41.0 5.5 29 56-84 38-66 (205)
489 cd01131 PilT Pilus retraction 89.9 0.52 1.1E-05 41.4 4.7 18 58-75 3-20 (198)
490 PF01745 IPT: Isopentenyl tran 89.8 0.54 1.2E-05 41.0 4.5 22 59-80 4-25 (233)
491 PF00154 RecA: recA bacterial 89.8 0.87 1.9E-05 42.9 6.3 47 56-111 53-99 (322)
492 PRK09361 radB DNA repair and r 89.6 0.54 1.2E-05 42.3 4.7 38 55-101 22-59 (225)
493 cd00544 CobU Adenosylcobinamid 89.5 0.57 1.2E-05 39.9 4.5 47 59-117 2-48 (169)
494 PF02534 T4SS-DNA_transf: Type 89.5 0.3 6.5E-06 49.6 3.3 49 57-116 45-93 (469)
495 KOG2036 Predicted P-loop ATPas 89.5 3.8 8.2E-05 42.1 10.5 55 43-105 255-316 (1011)
496 PHA00012 I assembly protein 89.4 3.9 8.4E-05 38.4 9.9 25 59-83 4-28 (361)
497 COG0210 UvrD Superfamily I DNA 89.4 1.1 2.3E-05 47.8 7.4 71 41-118 2-72 (655)
498 PF12775 AAA_7: P-loop contain 89.2 0.26 5.6E-06 45.7 2.4 22 54-75 31-52 (272)
499 KOG2170 ATPase of the AAA+ sup 89.1 5.7 0.00012 36.7 10.5 24 60-83 114-137 (344)
500 PF13555 AAA_29: P-loop contai 89.1 0.36 7.7E-06 33.0 2.4 18 56-73 23-40 (62)
No 1
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.1e-74 Score=531.72 Aligned_cols=478 Identities=47% Similarity=0.761 Sum_probs=416.4
Q ss_pred ccccCccCCcccCCCCHHHHHHHHHhcCCCCCcHHHHHHHHHhhcCCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCC
Q 010357 11 VKEIFASCSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDR 90 (512)
Q Consensus 11 ~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~ 90 (512)
....|.+..|.++|||+++...|.+.|+|..||.+|++++|.+++|++++|.++||||||++|++|+.+.+....++..+
T Consensus 129 ~e~~fts~~f~~LGL~~~lv~~L~~~m~i~~pTsVQkq~IP~lL~grD~lV~aQTGSGKTLAYllPiVq~Lq~m~~ki~R 208 (708)
T KOG0348|consen 129 SEAPFTSAAFASLGLHPHLVSHLNTKMKISAPTSVQKQAIPVLLEGRDALVRAQTGSGKTLAYLLPIVQSLQAMEPKIQR 208 (708)
T ss_pred cccccccccchhcCCCHHHHHHHHHHhccCccchHhhcchhhhhcCcceEEEcCCCCcccHHHHHHHHHHHHhcCccccc
Confidence 44559999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceEEEEcCcHHHHHHHHHHHHHHHhhcCCcceEEEeCCCchHHHHHHHcCCCCEEEeCChHHHHHHhhcCCCcCCce
Q 010357 91 SSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNL 170 (512)
Q Consensus 91 ~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~ 170 (512)
..|..+|+++|||+||.|+++.+.++...+.|++++++.||+..+.++.+++++++|+|+||++|.+++.+...+.++.+
T Consensus 209 s~G~~ALVivPTREL~~Q~y~~~qKLl~~~hWIVPg~lmGGEkkKSEKARLRKGiNILIgTPGRLvDHLknT~~i~~s~L 288 (708)
T KOG0348|consen 209 SDGPYALVIVPTRELALQIYETVQKLLKPFHWIVPGVLMGGEKKKSEKARLRKGINILIGTPGRLVDHLKNTKSIKFSRL 288 (708)
T ss_pred cCCceEEEEechHHHHHHHHHHHHHHhcCceEEeeceeecccccccHHHHHhcCceEEEcCchHHHHHHhccchheeeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEcchhHHHhcCchHHHHHHHHHhccCCCCCCCCCCcccccceeEEEEEEecchhhHHHHHhhcCCCeEEccCCCcC
Q 010357 171 RWIIFDEADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKL 250 (512)
Q Consensus 171 ~~lV~DEah~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (512)
.+|||||+|++++.||+..+..|+..+....... ... ...+...|.+++|||+++.+..+....+.+|.+|..+....
T Consensus 289 RwlVlDEaDrlleLGfekdit~Il~~v~~~~~~e-~~~-~~lp~q~q~mLlSATLtd~V~rLa~~sLkDpv~I~ld~s~~ 366 (708)
T KOG0348|consen 289 RWLVLDEADRLLELGFEKDITQILKAVHSIQNAE-CKD-PKLPHQLQNMLLSATLTDGVNRLADLSLKDPVYISLDKSHS 366 (708)
T ss_pred eEEEecchhHHHhccchhhHHHHHHHHhhccchh-ccc-ccccHHHHhHhhhhhhHHHHHHHhhccccCceeeeccchhh
Confidence 9999999999999999999999999985421111 011 11122578899999999999999999999999998655432
Q ss_pred CCCccccccCCcccchhhhccCCCccccccccccccccceeeeEEEecCCchHHHHHHHHHhhhccccCceEEEEeecch
Q 010357 251 PEDKSHVRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCD 330 (512)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~lvf~~~~~ 330 (512)
.... ..+...+.... ...+....+.+|+++.++|..+++.-++..|..+|.+.+......++|||.++.+
T Consensus 367 ~~~p--------~~~a~~ev~~~--~~~~~l~~~~iPeqL~qry~vVPpKLRLV~Laa~L~~~~k~~~~qk~iVF~S~~d 436 (708)
T KOG0348|consen 367 QLNP--------KDKAVQEVDDG--PAGDKLDSFAIPEQLLQRYTVVPPKLRLVALAALLLNKVKFEEKQKMIVFFSCSD 436 (708)
T ss_pred hcCc--------chhhhhhcCCc--ccccccccccCcHHhhhceEecCCchhHHHHHHHHHHHhhhhhhceeEEEEechh
Confidence 2220 00111111111 2223335678999999999999999999999999999988888889999999999
Q ss_pred hhhhHHHhhhhhcCC-----CCCCChhHHHhhhhccceeeecCCCCHHHHHHHHHhhhcCCCcEEEeecccccCCCCCCC
Q 010357 331 AVDFHYSLLSEFQWS-----PHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKV 405 (512)
Q Consensus 331 ~~~~l~~~l~~~~~~-----~~~~~~~~~~~~~~~~~v~~l~g~~~~~~r~~~~~~f~~~~~~vLvaT~~~~~Gldip~~ 405 (512)
.++..+.+|...... .+......+...+.+.+++.+||+|++++|..+++.|......||+|||++++|+|+|.+
T Consensus 437 ~VeFHy~lf~~~l~~~~e~~s~~~~s~g~~~l~~~~k~~rLHGsm~QeeRts~f~~Fs~~~~~VLLcTDVAaRGLDlP~V 516 (708)
T KOG0348|consen 437 SVEFHYSLFSEALLSHLEGSSGAPDSEGLPPLFMDLKFYRLHGSMEQEERTSVFQEFSHSRRAVLLCTDVAARGLDLPHV 516 (708)
T ss_pred HHHHHHHHHHhhhhcccccccCCcccCCChhhhhcceEEEecCchhHHHHHHHHHhhccccceEEEehhhhhccCCCCCc
Confidence 999999999876544 222234445666779999999999999999999999999999999999999999999999
Q ss_pred cEEEEeCCCCChhHHHHhhhhcccCCCCccEEEecCccchhHHHHHHHcCCCCCccChhhHhhhccccCCCCccccccCc
Q 010357 406 KCIIQYDSAGEATEYVHRVGRTARLGERGDSLLFLQPVEMDYLQDLEKHGVSLTEYPLLKVLDSFPLYGQKPRVKKFLTT 485 (512)
Q Consensus 406 ~~VI~~~~p~s~~~~~Q~~GRagR~g~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 485 (512)
++||+|++|.++.+|+||+||++|.|.+|.+++|+.|.+.++++.+....+.+.+.++...+..+.-.. .+....
T Consensus 517 ~~vVQYd~P~s~adylHRvGRTARaG~kG~alLfL~P~Eaey~~~l~~~~~~l~q~~~~~~l~~~~~~~-----~k~~~~ 591 (708)
T KOG0348|consen 517 GLVVQYDPPFSTADYLHRVGRTARAGEKGEALLFLLPSEAEYVNYLKKHHIMLLQFDMEILLPAFKPRK-----DKAKTK 591 (708)
T ss_pred CeEEEeCCCCCHHHHHHHhhhhhhccCCCceEEEecccHHHHHHHHHhhcchhhccchhhhhhhcCccc-----ccccch
Confidence 999999999999999999999999999999999999999999999999988899999999888876221 124445
Q ss_pred cchhhHHHHHHHHHHHHHhc
Q 010357 486 ESHPWILSLQNALESFIIHE 505 (512)
Q Consensus 486 ~~~~~~~~~~~~~e~~~~~~ 505 (512)
+|++++..||..+|.++..+
T Consensus 592 e~~~~at~~q~~~e~~~~~~ 611 (708)
T KOG0348|consen 592 EWQERATTLQLNLERLVVGD 611 (708)
T ss_pred hhhhhHHHHHHHHHHHHhcc
Confidence 89999999999999998876
No 2
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.2e-66 Score=462.54 Aligned_cols=369 Identities=38% Similarity=0.644 Sum_probs=338.7
Q ss_pred ccCCcccCCCCHHHHHHHHHhcCCCCCcHHHHHHHHHhhcCCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCce
Q 010357 16 ASCSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTF 95 (512)
Q Consensus 16 ~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (512)
+..+|.++|++++++++++ ..|+..|+++|++++|.++.|+++|..|.||||||.+|++|+++.+.+... ...
T Consensus 59 ~~~sf~dLgv~~~L~~ac~-~l~~~~PT~IQ~~aiP~~L~g~dvIglAeTGSGKT~afaLPIl~~LL~~p~------~~~ 131 (476)
T KOG0330|consen 59 SFKSFADLGVHPELLEACQ-ELGWKKPTKIQSEAIPVALGGRDVIGLAETGSGKTGAFALPILQRLLQEPK------LFF 131 (476)
T ss_pred hhcchhhcCcCHHHHHHHH-HhCcCCCchhhhhhcchhhCCCcEEEEeccCCCchhhhHHHHHHHHHcCCC------Cce
Confidence 4568999999999999995 569999999999999999999999999999999999999999999988332 478
Q ss_pred EEEEcCcHHHHHHHHHHHHHHHhhcCCcceEEEeCCCchHHHHHHHcCCCCEEEeCChHHHHHHhhcCCCcCCceeEEEE
Q 010357 96 ALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIF 175 (512)
Q Consensus 96 ~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lV~ 175 (512)
++|++|||+||.|+++.+..+....+ ..+.++.||.+...+...+.+.++|+|+||++|++++.+.+.+.+..++++|+
T Consensus 132 ~lVLtPtRELA~QI~e~fe~Lg~~ig-lr~~~lvGG~~m~~q~~~L~kkPhilVaTPGrL~dhl~~Tkgf~le~lk~LVl 210 (476)
T KOG0330|consen 132 ALVLTPTRELAQQIAEQFEALGSGIG-LRVAVLVGGMDMMLQANQLSKKPHILVATPGRLWDHLENTKGFSLEQLKFLVL 210 (476)
T ss_pred EEEecCcHHHHHHHHHHHHHhccccC-eEEEEEecCchHHHHHHHhhcCCCEEEeCcHHHHHHHHhccCccHHHhHHHhh
Confidence 99999999999999999999988777 56677889999999999999999999999999999999889999999999999
Q ss_pred cchhHHHhcCchHHHHHHHHHhccCCCCCCCCCCcccccceeEEEEEEecchhhHHHHHhhcCCCeEEccCCCcCCCCcc
Q 010357 176 DEADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLPEDKS 255 (512)
Q Consensus 176 DEah~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (512)
||||++++..|...+..|+..+|. .+|.+++|||++..+.++....+.+|..+.....
T Consensus 211 DEADrlLd~dF~~~ld~ILk~ip~---------------erqt~LfsATMt~kv~kL~rasl~~p~~v~~s~k------- 268 (476)
T KOG0330|consen 211 DEADRLLDMDFEEELDYILKVIPR---------------ERQTFLFSATMTKKVRKLQRASLDNPVKVAVSSK------- 268 (476)
T ss_pred chHHhhhhhhhHHHHHHHHHhcCc---------------cceEEEEEeecchhhHHHHhhccCCCeEEeccch-------
Confidence 999999999999999999999997 9999999999999999999988888888766554
Q ss_pred ccccCCcccchhhhccCCCccccccccccccccceeeeEEEecCCchHHHHHHHHHhhhccccCceEEEEeecchhhhhH
Q 010357 256 HVRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFH 335 (512)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~lvf~~~~~~~~~l 335 (512)
+...+.+.+.|..++...|...|+.++++. .+...||||++...+.++
T Consensus 269 ----------------------------y~tv~~lkQ~ylfv~~k~K~~yLV~ll~e~----~g~s~iVF~~t~~tt~~l 316 (476)
T KOG0330|consen 269 ----------------------------YQTVDHLKQTYLFVPGKDKDTYLVYLLNEL----AGNSVIVFCNTCNTTRFL 316 (476)
T ss_pred ----------------------------hcchHHhhhheEeccccccchhHHHHHHhh----cCCcEEEEEeccchHHHH
Confidence 345678889999999999999999999865 468999999999999999
Q ss_pred HHhhhhhcCCCCCCChhHHHhhhhccceeeecCCCCHHHHHHHHHhhhcCCCcEEEeecccccCCCCCCCcEEEEeCCCC
Q 010357 336 YSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAG 415 (512)
Q Consensus 336 ~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~l~g~~~~~~r~~~~~~f~~~~~~vLvaT~~~~~Gldip~~~~VI~~~~p~ 415 (512)
+-.|... ++.+..+||+|+.+.|.-.++.|++|..+||+|||++++|+|+|.+++|||||.|.
T Consensus 317 a~~L~~l-----------------g~~a~~LhGqmsq~~Rlg~l~~Fk~~~r~iLv~TDVaSRGLDip~Vd~VVNyDiP~ 379 (476)
T KOG0330|consen 317 ALLLRNL-----------------GFQAIPLHGQMSQSKRLGALNKFKAGARSILVCTDVASRGLDIPHVDVVVNYDIPT 379 (476)
T ss_pred HHHHHhc-----------------CcceecccchhhHHHHHHHHHHHhccCCcEEEecchhcccCCCCCceEEEecCCCC
Confidence 9999998 88999999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHhhhhcccCCCCccEEEecCccchhHHHHHHHc-CCCCCccCh
Q 010357 416 EATEYVHRVGRTARLGERGDSLLFLQPVEMDYLQDLEKH-GVSLTEYPL 463 (512)
Q Consensus 416 s~~~~~Q~~GRagR~g~~g~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~ 463 (512)
+..+|+||+||+||.|..|.++.+++-.|.+.+.+++.. +...+++++
T Consensus 380 ~skDYIHRvGRtaRaGrsG~~ItlVtqyDve~~qrIE~~~gkkl~~~~~ 428 (476)
T KOG0330|consen 380 HSKDYIHRVGRTARAGRSGKAITLVTQYDVELVQRIEHALGKKLPEYKV 428 (476)
T ss_pred cHHHHHHHcccccccCCCcceEEEEehhhhHHHHHHHHHHhcCCCccCc
Confidence 999999999999999999999999999998888887774 555555544
No 3
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.1e-64 Score=482.46 Aligned_cols=367 Identities=35% Similarity=0.582 Sum_probs=331.3
Q ss_pred CcccCCCCHHHHHHHHHhcCCCCCcHHHHHHHHHhhcCCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEE
Q 010357 19 SFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALV 98 (512)
Q Consensus 19 ~~~~~~l~~~~~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~li 98 (512)
.|++++++++....++.. ||..|+|+|.+.||.++.|++++..|.||||||++|++|++.++....+...++.++.+|+
T Consensus 92 ~f~~~~ls~~~~~~lk~~-g~~~PtpIQaq~wp~~l~GrD~v~iA~TGSGKTLay~lP~i~~l~~~~~~~~~~~~P~vLV 170 (519)
T KOG0331|consen 92 AFQELGLSEELMKALKEQ-GFEKPTPIQAQGWPIALSGRDLVGIARTGSGKTLAYLLPAIVHLNNEQGKLSRGDGPIVLV 170 (519)
T ss_pred hhhcccccHHHHHHHHhc-CCCCCchhhhcccceeccCCceEEEeccCCcchhhhhhHHHHHHHhccccccCCCCCeEEE
Confidence 699999999999999765 9999999999999999999999999999999999999999999987656666677999999
Q ss_pred EcCcHHHHHHHHHHHHHHHhhcCCcceEEEeCCCchHHHHHHHcCCCCEEEeCChHHHHHHhhcCCCcCCceeEEEEcch
Q 010357 99 LVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEA 178 (512)
Q Consensus 99 l~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lV~DEa 178 (512)
++|||+||.|+...+..+...+. ....+++||.....+...+..+.+|+|+||+++.+++.. +...++.+.++|+|||
T Consensus 171 L~PTRELA~QV~~~~~~~~~~~~-~~~~cvyGG~~~~~Q~~~l~~gvdiviaTPGRl~d~le~-g~~~l~~v~ylVLDEA 248 (519)
T KOG0331|consen 171 LAPTRELAVQVQAEAREFGKSLR-LRSTCVYGGAPKGPQLRDLERGVDVVIATPGRLIDLLEE-GSLNLSRVTYLVLDEA 248 (519)
T ss_pred EcCcHHHHHHHHHHHHHHcCCCC-ccEEEEeCCCCccHHHHHHhcCCcEEEeCChHHHHHHHc-CCccccceeEEEeccH
Confidence 99999999999999999988766 567889999999999999999999999999999999987 7778899999999999
Q ss_pred hHHHhcCchHHHHHHHHHhccCCCCCCCCCCcccccceeEEEEEEecchhhHHHHHhhcCCCeEEccCCCcCCCCccccc
Q 010357 179 DRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLPEDKSHVR 258 (512)
Q Consensus 179 h~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (512)
|+|++.+|..+++.|+..++.. ..|+++.|||+|..+..+...++.+|..+.+....
T Consensus 249 DrMldmGFe~qI~~Il~~i~~~--------------~rQtlm~saTwp~~v~~lA~~fl~~~~~i~ig~~~--------- 305 (519)
T KOG0331|consen 249 DRMLDMGFEPQIRKILSQIPRP--------------DRQTLMFSATWPKEVRQLAEDFLNNPIQINVGNKK--------- 305 (519)
T ss_pred HhhhccccHHHHHHHHHhcCCC--------------cccEEEEeeeccHHHHHHHHHHhcCceEEEecchh---------
Confidence 9999999999999999999542 55899999999999999999999998877665441
Q ss_pred cCCcccchhhhccCCCccccccccccccccceeeeEEEecCCchHHHHHHHHHhhhccccCceEEEEeecchhhhhHHHh
Q 010357 259 FGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSL 338 (512)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~ 338 (512)
+.....++.+....++...|...+..+|..+. ...++++||||++++.|+.+...
T Consensus 306 ------------------------~~~a~~~i~qive~~~~~~K~~~l~~lL~~~~-~~~~~KvIIFc~tkr~~~~l~~~ 360 (519)
T KOG0331|consen 306 ------------------------ELKANHNIRQIVEVCDETAKLRKLGKLLEDIS-SDSEGKVIIFCETKRTCDELARN 360 (519)
T ss_pred ------------------------hhhhhcchhhhhhhcCHHHHHHHHHHHHHHHh-ccCCCcEEEEecchhhHHHHHHH
Confidence 01234556677777787888889999998876 45678999999999999999999
Q ss_pred hhhhcCCCCCCChhHHHhhhhccceeeecCCCCHHHHHHHHHhhhcCCCcEEEeecccccCCCCCCCcEEEEeCCCCChh
Q 010357 339 LSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEAT 418 (512)
Q Consensus 339 l~~~~~~~~~~~~~~~~~~~~~~~v~~l~g~~~~~~r~~~~~~f~~~~~~vLvaT~~~~~Gldip~~~~VI~~~~p~s~~ 418 (512)
+... ++++..+||+.++.+|+.+++.|++|+..|||||+++++|+|+|++++||+||+|.+++
T Consensus 361 l~~~-----------------~~~a~~iHGd~sQ~eR~~~L~~FreG~~~vLVATdVAaRGLDi~dV~lVInydfP~~vE 423 (519)
T KOG0331|consen 361 LRRK-----------------GWPAVAIHGDKSQSERDWVLKGFREGKSPVLVATDVAARGLDVPDVDLVINYDFPNNVE 423 (519)
T ss_pred HHhc-----------------CcceeeecccccHHHHHHHHHhcccCCcceEEEcccccccCCCccccEEEeCCCCCCHH
Confidence 9987 67899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhcccCCCCccEEEecCccchhHHHHHHH
Q 010357 419 EYVHRVGRTARLGERGDSLLFLQPVEMDYLQDLEK 453 (512)
Q Consensus 419 ~~~Q~~GRagR~g~~g~~~~~~~~~~~~~~~~l~~ 453 (512)
+|+||+||+||+|+.|.++.|++..+......+.+
T Consensus 424 dYVHRiGRTGRa~~~G~A~tfft~~~~~~a~~l~~ 458 (519)
T KOG0331|consen 424 DYVHRIGRTGRAGKKGTAITFFTSDNAKLARELIK 458 (519)
T ss_pred HHHhhcCccccCCCCceEEEEEeHHHHHHHHHHHH
Confidence 99999999999999999999999988655554444
No 4
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=100.00 E-value=1.7e-61 Score=444.41 Aligned_cols=376 Identities=43% Similarity=0.702 Sum_probs=341.8
Q ss_pred cCccCCcccCCCCHHHHHHHHHhcCCCCCcHHHHHHHHHhhcCCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCC
Q 010357 14 IFASCSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSG 93 (512)
Q Consensus 14 ~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~ 93 (512)
+.....|++..|++...+++ +.+||.+++++|+..++.++.|+++++.|-||||||++|++|+.+.+....++. .++
T Consensus 78 ~~~~~~f~~~~LS~~t~kAi-~~~GF~~MT~VQ~~ti~pll~gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~~--r~~ 154 (543)
T KOG0342|consen 78 ITTTFRFEEGSLSPLTLKAI-KEMGFETMTPVQQKTIPPLLEGKDVLAAAKTGTGKTLAFLLPAIELLRKLKFKP--RNG 154 (543)
T ss_pred hhhhhHhhccccCHHHHHHH-HhcCccchhHHHHhhcCccCCCccceeeeccCCCceeeehhHHHHHHHhcccCC--CCC
Confidence 55567899999999999999 568999999999999999999999999999999999999999999998866543 268
Q ss_pred ceEEEEcCcHHHHHHHHHHHHHHHhhcCCcceEEEeCCCchHHHHHHHcCCCCEEEeCChHHHHHHhhcCCCcCCceeEE
Q 010357 94 TFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWI 173 (512)
Q Consensus 94 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~l 173 (512)
..++|++|||+||.|.+.+++++...+....++.+.||.+...+.+.+.++++|+|+||++|.+++.+.+.+.+.+++++
T Consensus 155 ~~vlIi~PTRELA~Q~~~eak~Ll~~h~~~~v~~viGG~~~~~e~~kl~k~~niliATPGRLlDHlqNt~~f~~r~~k~l 234 (543)
T KOG0342|consen 155 TGVLIICPTRELAMQIFAEAKELLKYHESITVGIVIGGNNFSVEADKLVKGCNILIATPGRLLDHLQNTSGFLFRNLKCL 234 (543)
T ss_pred eeEEEecccHHHHHHHHHHHHHHHhhCCCcceEEEeCCccchHHHHHhhccccEEEeCCchHHhHhhcCCcchhhcccee
Confidence 88999999999999999999999998866788999999999999999999999999999999999999999888889999
Q ss_pred EEcchhHHHhcCchHHHHHHHHHhccCCCCCCCCCCcccccceeEEEEEEecchhhHHHHHhhcCC-CeEEccCCCcCCC
Q 010357 174 IFDEADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLET-PVLIGLDEKKLPE 252 (512)
Q Consensus 174 V~DEah~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 252 (512)
|+||||++++.||...+..|+..++. .+|.+++|||.++.++.++...+.. +.++.+....-
T Consensus 235 vlDEADrlLd~GF~~di~~Ii~~lpk---------------~rqt~LFSAT~~~kV~~l~~~~L~~d~~~v~~~d~~~-- 297 (543)
T KOG0342|consen 235 VLDEADRLLDIGFEEDVEQIIKILPK---------------QRQTLLFSATQPSKVKDLARGALKRDPVFVNVDDGGE-- 297 (543)
T ss_pred EeecchhhhhcccHHHHHHHHHhccc---------------cceeeEeeCCCcHHHHHHHHHhhcCCceEeecCCCCC--
Confidence 99999999999999999999999997 8999999999999999999987765 77776655431
Q ss_pred CccccccCCcccchhhhccCCCccccccccccccccceeeeEEEecCCchHHHHHHHHHhhhccccCceEEEEeecchhh
Q 010357 253 DKSHVRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAV 332 (512)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~lvf~~~~~~~ 332 (512)
....+.+.+.++..+...+...+..++++... ..++||||+|...+
T Consensus 298 -------------------------------~~The~l~Qgyvv~~~~~~f~ll~~~LKk~~~---~~KiiVF~sT~~~v 343 (543)
T KOG0342|consen 298 -------------------------------RETHERLEQGYVVAPSDSRFSLLYTFLKKNIK---RYKIIVFFSTCMSV 343 (543)
T ss_pred -------------------------------cchhhcccceEEeccccchHHHHHHHHHHhcC---CceEEEEechhhHH
Confidence 23456778888888888888999999988642 38999999999999
Q ss_pred hhHHHhhhhhcCCCCCCChhHHHhhhhccceeeecCCCCHHHHHHHHHhhhcCCCcEEEeecccccCCCCCCCcEEEEeC
Q 010357 333 DFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYD 412 (512)
Q Consensus 333 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~l~g~~~~~~r~~~~~~f~~~~~~vLvaT~~~~~Gldip~~~~VI~~~ 412 (512)
..++++|... +.+|..+||++++..|..+..+|++.+..||||||++++|+|+|+++.||+||
T Consensus 344 k~~~~lL~~~-----------------dlpv~eiHgk~~Q~kRT~~~~~F~kaesgIL~cTDVaARGlD~P~V~~VvQ~~ 406 (543)
T KOG0342|consen 344 KFHAELLNYI-----------------DLPVLEIHGKQKQNKRTSTFFEFCKAESGILVCTDVAARGLDIPDVDWVVQYD 406 (543)
T ss_pred HHHHHHHhhc-----------------CCchhhhhcCCcccccchHHHHHhhcccceEEecchhhccCCCCCceEEEEeC
Confidence 9999999976 88999999999999999999999999999999999999999999999999999
Q ss_pred CCCChhHHHHhhhhcccCCCCccEEEecCccchhHHHHHHHcCCCCCccC
Q 010357 413 SAGEATEYVHRVGRTARLGERGDSLLFLQPVEMDYLQDLEKHGVSLTEYP 462 (512)
Q Consensus 413 ~p~s~~~~~Q~~GRagR~g~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 462 (512)
+|.++.+|+||+||+||.|+.|.+++++.|.+..+++.|.+ +++++.+
T Consensus 407 ~P~d~~~YIHRvGRTaR~gk~G~alL~l~p~El~Flr~LK~--lpl~~~e 454 (543)
T KOG0342|consen 407 PPSDPEQYIHRVGRTAREGKEGKALLLLAPWELGFLRYLKK--LPLEEFE 454 (543)
T ss_pred CCCCHHHHHHHhccccccCCCceEEEEeChhHHHHHHHHhh--CCCcccC
Confidence 99999999999999999999999999999999999999984 5555544
No 5
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=2.2e-60 Score=470.65 Aligned_cols=383 Identities=29% Similarity=0.456 Sum_probs=320.0
Q ss_pred cCccCCcccCCCCHHHHHHHHHhcCCCCCcHHHHHHHHHhhcCCCEEEEccCCChHhHHHHHHHHHHHhhcCCCC-CCCC
Q 010357 14 IFASCSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRI-DRSS 92 (512)
Q Consensus 14 ~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~-~~~~ 92 (512)
-++..+|++++|++++.+.+. .+||..|+++|.++++.+++|+|++++||||||||++|++|+++.+....... ....
T Consensus 4 ~~~~~~f~~~~l~~~l~~~l~-~~g~~~pt~iQ~~aip~il~g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~~~~~ 82 (423)
T PRK04837 4 HLTEQKFSDFALHPQVVEALE-KKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPEDRKVN 82 (423)
T ss_pred cCCCCCHhhCCCCHHHHHHHH-HCCCCCCCHHHHHHHHHHhCCCcEEEECCCCchHHHHHHHHHHHHHHhcccccccccC
Confidence 356689999999999999995 57999999999999999999999999999999999999999999887643321 1134
Q ss_pred CceEEEEcCcHHHHHHHHHHHHHHHhhcCCcceEEEeCCCchHHHHHHHcCCCCEEEeCChHHHHHHhhcCCCcCCceeE
Q 010357 93 GTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRW 172 (512)
Q Consensus 93 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~ 172 (512)
+.++||++||++|+.|+.+.+..+....+ ..+..++||.........+..+++|+|+||+++.+++.. ..+.++++++
T Consensus 83 ~~~~lil~PtreLa~Qi~~~~~~l~~~~~-~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~-~~~~l~~v~~ 160 (423)
T PRK04837 83 QPRALIMAPTRELAVQIHADAEPLAQATG-LKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQ-NHINLGAIQV 160 (423)
T ss_pred CceEEEECCcHHHHHHHHHHHHHHhccCC-ceEEEEECCCCHHHHHHHhcCCCCEEEECHHHHHHHHHc-CCcccccccE
Confidence 67899999999999999999999887665 556777888888888888888899999999999998876 5667889999
Q ss_pred EEEcchhHHHhcCchHHHHHHHHHhccCCCCCCCCCCcccccceeEEEEEEecchhhHHHHHhhcCCCeEEccCCCcCCC
Q 010357 173 IIFDEADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLPE 252 (512)
Q Consensus 173 lV~DEah~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (512)
+|+||||++.+.+|...+..++..++... ..+.+++|||++.....+....+.++..+.+.....
T Consensus 161 lViDEad~l~~~~f~~~i~~i~~~~~~~~-------------~~~~~l~SAT~~~~~~~~~~~~~~~p~~i~v~~~~~-- 225 (423)
T PRK04837 161 VVLDEADRMFDLGFIKDIRWLFRRMPPAN-------------QRLNMLFSATLSYRVRELAFEHMNNPEYVEVEPEQK-- 225 (423)
T ss_pred EEEecHHHHhhcccHHHHHHHHHhCCCcc-------------ceeEEEEeccCCHHHHHHHHHHCCCCEEEEEcCCCc--
Confidence 99999999999999999999998876421 456799999999988888887787777665443320
Q ss_pred CccccccCCcccchhhhccCCCccccccccccccccceeeeEEEecCCchHHHHHHHHHhhhccccCceEEEEeecchhh
Q 010357 253 DKSHVRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAV 332 (512)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~lvf~~~~~~~ 332 (512)
....+.+.+.......|...+..++.. ....++||||+++..+
T Consensus 226 ---------------------------------~~~~i~~~~~~~~~~~k~~~l~~ll~~----~~~~~~lVF~~t~~~~ 268 (423)
T PRK04837 226 ---------------------------------TGHRIKEELFYPSNEEKMRLLQTLIEE----EWPDRAIIFANTKHRC 268 (423)
T ss_pred ---------------------------------CCCceeEEEEeCCHHHHHHHHHHHHHh----cCCCeEEEEECCHHHH
Confidence 112233344444445666666666653 3467999999999999
Q ss_pred hhHHHhhhhhcCCCCCCChhHHHhhhhccceeeecCCCCHHHHHHHHHhhhcCCCcEEEeecccccCCCCCCCcEEEEeC
Q 010357 333 DFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYD 412 (512)
Q Consensus 333 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~l~g~~~~~~r~~~~~~f~~~~~~vLvaT~~~~~Gldip~~~~VI~~~ 412 (512)
+.+++.|... ++.+..+||+|+..+|..+++.|++|+.+|||||+++++|+|+|++++||+|+
T Consensus 269 ~~l~~~L~~~-----------------g~~v~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTdv~~rGiDip~v~~VI~~d 331 (423)
T PRK04837 269 EEIWGHLAAD-----------------GHRVGLLTGDVAQKKRLRILEEFTRGDLDILVATDVAARGLHIPAVTHVFNYD 331 (423)
T ss_pred HHHHHHHHhC-----------------CCcEEEecCCCChhHHHHHHHHHHcCCCcEEEEechhhcCCCccccCEEEEeC
Confidence 9999999887 88999999999999999999999999999999999999999999999999999
Q ss_pred CCCChhHHHHhhhhcccCCCCccEEEecCccchhHHHHHHHc-CC--CCCccChhhHhh
Q 010357 413 SAGEATEYVHRVGRTARLGERGDSLLFLQPVEMDYLQDLEKH-GV--SLTEYPLLKVLD 468 (512)
Q Consensus 413 ~p~s~~~~~Q~~GRagR~g~~g~~~~~~~~~~~~~~~~l~~~-~~--~~~~~~~~~~l~ 468 (512)
+|.+..+|+||+||+||.|+.|.+++|+++.+...+..+++. +. +..+++.++++.
T Consensus 332 ~P~s~~~yiqR~GR~gR~G~~G~ai~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 390 (423)
T PRK04837 332 LPDDCEDYVHRIGRTGRAGASGHSISLACEEYALNLPAIETYIGHSIPVSKYDSDALLT 390 (423)
T ss_pred CCCchhheEeccccccCCCCCeeEEEEeCHHHHHHHHHHHHHhCCCCCCccCChhhhhh
Confidence 999999999999999999999999999999988888887663 33 334444455554
No 6
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.7e-61 Score=444.81 Aligned_cols=362 Identities=38% Similarity=0.595 Sum_probs=329.5
Q ss_pred cCCcccCCCCHHHHHHHHHhcCCCCCcHHHHHHHHHhhcCCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceE
Q 010357 17 SCSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFA 96 (512)
Q Consensus 17 ~~~~~~~~l~~~~~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (512)
..+|.+++|+.++++++ ..+||..|+|+|..++|..+-|++++.||.||||||.+|++|+++.+.-.+.+ ....++
T Consensus 180 ~~sF~~mNLSRPlLka~-~~lGy~~PTpIQ~a~IPvallgkDIca~A~TGsGKTAAF~lPiLERLlYrPk~---~~~TRV 255 (691)
T KOG0338|consen 180 NESFQSMNLSRPLLKAC-STLGYKKPTPIQVATIPVALLGKDICACAATGSGKTAAFALPILERLLYRPKK---VAATRV 255 (691)
T ss_pred hhhHHhcccchHHHHHH-HhcCCCCCCchhhhcccHHhhcchhhheecccCCchhhhHHHHHHHHhcCccc---CcceeE
Confidence 34899999999999999 67899999999999999999999999999999999999999999998775443 346789
Q ss_pred EEEcCcHHHHHHHHHHHHHHHhhcCCcceEEEeCCCchHHHHHHHcCCCCEEEeCChHHHHHHhhcCCCcCCceeEEEEc
Q 010357 97 LVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFD 176 (512)
Q Consensus 97 lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lV~D 176 (512)
||++|||+|+.|+....++++.+.. +.++...||-+...+-..+++.+||+|+||++|.+++.+...|.++++.++|+|
T Consensus 256 LVL~PTRELaiQv~sV~~qlaqFt~-I~~~L~vGGL~lk~QE~~LRs~PDIVIATPGRlIDHlrNs~sf~ldsiEVLvlD 334 (691)
T KOG0338|consen 256 LVLVPTRELAIQVHSVTKQLAQFTD-ITVGLAVGGLDLKAQEAVLRSRPDIVIATPGRLIDHLRNSPSFNLDSIEVLVLD 334 (691)
T ss_pred EEEeccHHHHHHHHHHHHHHHhhcc-ceeeeeecCccHHHHHHHHhhCCCEEEecchhHHHHhccCCCccccceeEEEec
Confidence 9999999999999999999988665 788999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHhcCchHHHHHHHHHhccCCCCCCCCCCcccccceeEEEEEEecchhhHHHHHhhcCCCeEEccCCCcCCCCccc
Q 010357 177 EADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLPEDKSH 256 (512)
Q Consensus 177 Eah~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (512)
|||+|++.+|..++..|+..++. .+|.+++|||++..++.+....++.|..+.+++..
T Consensus 335 EADRMLeegFademnEii~lcpk---------------~RQTmLFSATMteeVkdL~slSL~kPvrifvd~~~------- 392 (691)
T KOG0338|consen 335 EADRMLEEGFADEMNEIIRLCPK---------------NRQTMLFSATMTEEVKDLASLSLNKPVRIFVDPNK------- 392 (691)
T ss_pred hHHHHHHHHHHHHHHHHHHhccc---------------cccceeehhhhHHHHHHHHHhhcCCCeEEEeCCcc-------
Confidence 99999999999999999999998 89999999999999999999999999998887764
Q ss_pred cccCCcccchhhhccCCCccccccccccccccceeeeEEEec---CCchHHHHHHHHHhhhccccCceEEEEeecchhhh
Q 010357 257 VRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVP---CGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVD 333 (512)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~k~~~l~~~l~~~~~~~~~~~~lvf~~~~~~~~ 333 (512)
..+..+.+.|+... ...+-..+..++...+ ...++||+.+++.|.
T Consensus 393 ----------------------------~~a~~LtQEFiRIR~~re~dRea~l~~l~~rtf----~~~~ivFv~tKk~AH 440 (691)
T KOG0338|consen 393 ----------------------------DTAPKLTQEFIRIRPKREGDREAMLASLITRTF----QDRTIVFVRTKKQAH 440 (691)
T ss_pred ----------------------------ccchhhhHHHheeccccccccHHHHHHHHHHhc----ccceEEEEehHHHHH
Confidence 23445556555543 3456677777777765 579999999999999
Q ss_pred hHHHhhhhhcCCCCCCChhHHHhhhhccceeeecCCCCHHHHHHHHHhhhcCCCcEEEeecccccCCCCCCCcEEEEeCC
Q 010357 334 FHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDS 413 (512)
Q Consensus 334 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~l~g~~~~~~r~~~~~~f~~~~~~vLvaT~~~~~Gldip~~~~VI~~~~ 413 (512)
.+.-+|--. |.++.-+||++++.+|-..++.|++++++|||||+++++|+|++++.+||||.+
T Consensus 441 Rl~IllGLl-----------------gl~agElHGsLtQ~QRlesL~kFk~~eidvLiaTDvAsRGLDI~gV~tVINy~m 503 (691)
T KOG0338|consen 441 RLRILLGLL-----------------GLKAGELHGSLTQEQRLESLEKFKKEEIDVLIATDVASRGLDIEGVQTVINYAM 503 (691)
T ss_pred HHHHHHHHh-----------------hchhhhhcccccHHHHHHHHHHHHhccCCEEEEechhhccCCccceeEEEeccC
Confidence 987777554 889999999999999999999999999999999999999999999999999999
Q ss_pred CCChhHHHHhhhhcccCCCCccEEEecCccchhHHHHHHHc
Q 010357 414 AGEATEYVHRVGRTARLGERGDSLLFLQPVEMDYLQDLEKH 454 (512)
Q Consensus 414 p~s~~~~~Q~~GRagR~g~~g~~~~~~~~~~~~~~~~l~~~ 454 (512)
|.+...|+||+||++|+|+.|.++.|+..+|...++.+.+.
T Consensus 504 P~t~e~Y~HRVGRTARAGRaGrsVtlvgE~dRkllK~iik~ 544 (691)
T KOG0338|consen 504 PKTIEHYLHRVGRTARAGRAGRSVTLVGESDRKLLKEIIKS 544 (691)
T ss_pred chhHHHHHHHhhhhhhcccCcceEEEeccccHHHHHHHHhh
Confidence 99999999999999999999999999999999999988774
No 7
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.5e-60 Score=474.23 Aligned_cols=362 Identities=40% Similarity=0.611 Sum_probs=324.6
Q ss_pred CCcccCCCCHHHHHHHHHhcCCCCCcHHHHHHHHHhhcCCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEE
Q 010357 18 CSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFAL 97 (512)
Q Consensus 18 ~~~~~~~l~~~~~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~l 97 (512)
.+|+++++++++++.+.+ .||..|+|+|..++|.++.|+|++++|+||||||++|++|+++.+... .. .....+|
T Consensus 29 ~~F~~l~l~~~ll~~l~~-~gf~~pt~IQ~~~IP~~l~g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~-~~---~~~~~aL 103 (513)
T COG0513 29 PEFASLGLSPELLQALKD-LGFEEPTPIQLAAIPLILAGRDVLGQAQTGTGKTAAFLLPLLQKILKS-VE---RKYVSAL 103 (513)
T ss_pred CCHhhcCCCHHHHHHHHH-cCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhcc-cc---cCCCceE
Confidence 679999999999999965 799999999999999999999999999999999999999999997642 11 0111199
Q ss_pred EEcCcHHHHHHHHHHHHHHHhhcCCcceEEEeCCCchHHHHHHHcCCCCEEEeCChHHHHHHhhcCCCcCCceeEEEEcc
Q 010357 98 VLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDE 177 (512)
Q Consensus 98 il~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lV~DE 177 (512)
|++|||+||.|+++.+..+....+...+..++||.+...+...+..+++|+|+||+++++++.. +.+.++.+.++|+||
T Consensus 104 il~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~~~~~ivVaTPGRllD~i~~-~~l~l~~v~~lVlDE 182 (513)
T COG0513 104 ILAPTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALKRGVDIVVATPGRLLDLIKR-GKLDLSGVETLVLDE 182 (513)
T ss_pred EECCCHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHHhcCCCEEEECccHHHHHHHc-CCcchhhcCEEEecc
Confidence 9999999999999999999887644567889999999999999988899999999999999988 478889999999999
Q ss_pred hhHHHhcCchHHHHHHHHHhccCCCCCCCCCCcccccceeEEEEEEecchhhHHHHHhhcCCCeEEccCCCcCCCCcccc
Q 010357 178 ADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLPEDKSHV 257 (512)
Q Consensus 178 ah~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (512)
||+|++.+|...+..|+..++. ..|++++|||++..+..+.+.++.+|..+.+.....
T Consensus 183 ADrmLd~Gf~~~i~~I~~~~p~---------------~~qtllfSAT~~~~i~~l~~~~l~~p~~i~v~~~~~------- 240 (513)
T COG0513 183 ADRMLDMGFIDDIEKILKALPP---------------DRQTLLFSATMPDDIRELARRYLNDPVEIEVSVEKL------- 240 (513)
T ss_pred HhhhhcCCCHHHHHHHHHhCCc---------------ccEEEEEecCCCHHHHHHHHHHccCCcEEEEccccc-------
Confidence 9999999999999999999987 899999999999999999999999998776663321
Q ss_pred ccCCcccchhhhccCCCccccccccccccccceeeeEEEecCCc-hHHHHHHHHHhhhccccCceEEEEeecchhhhhHH
Q 010357 258 RFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCGS-RLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHY 336 (512)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-k~~~l~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~ 336 (512)
......+.+.+..+.... |...+..++... ...++||||+++..++.++
T Consensus 241 --------------------------~~~~~~i~q~~~~v~~~~~k~~~L~~ll~~~----~~~~~IVF~~tk~~~~~l~ 290 (513)
T COG0513 241 --------------------------ERTLKKIKQFYLEVESEEEKLELLLKLLKDE----DEGRVIVFVRTKRLVEELA 290 (513)
T ss_pred --------------------------cccccCceEEEEEeCCHHHHHHHHHHHHhcC----CCCeEEEEeCcHHHHHHHH
Confidence 124577888999888766 888888888753 3457999999999999999
Q ss_pred HhhhhhcCCCCCCChhHHHhhhhccceeeecCCCCHHHHHHHHHhhhcCCCcEEEeecccccCCCCCCCcEEEEeCCCCC
Q 010357 337 SLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGE 416 (512)
Q Consensus 337 ~~l~~~~~~~~~~~~~~~~~~~~~~~v~~l~g~~~~~~r~~~~~~f~~~~~~vLvaT~~~~~Gldip~~~~VI~~~~p~s 416 (512)
..|... ++.+..+||+|++.+|.++++.|++|+.+||||||++++|+|+|++++||+||.|.+
T Consensus 291 ~~l~~~-----------------g~~~~~lhG~l~q~~R~~~l~~F~~g~~~vLVaTDvaaRGiDi~~v~~VinyD~p~~ 353 (513)
T COG0513 291 ESLRKR-----------------GFKVAALHGDLPQEERDRALEKFKDGELRVLVATDVAARGLDIPDVSHVINYDLPLD 353 (513)
T ss_pred HHHHHC-----------------CCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEEechhhccCCccccceeEEccCCCC
Confidence 999988 889999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHhhhhcccCCCCccEEEecCcc-chhHHHHHHHc
Q 010357 417 ATEYVHRVGRTARLGERGDSLLFLQPV-EMDYLQDLEKH 454 (512)
Q Consensus 417 ~~~~~Q~~GRagR~g~~g~~~~~~~~~-~~~~~~~l~~~ 454 (512)
++.|+||+||+||+|..|.++.|+.+. |...++.+++.
T Consensus 354 ~e~yvHRiGRTgRaG~~G~ai~fv~~~~e~~~l~~ie~~ 392 (513)
T COG0513 354 PEDYVHRIGRTGRAGRKGVAISFVTEEEEVKKLKRIEKR 392 (513)
T ss_pred HHHheeccCccccCCCCCeEEEEeCcHHHHHHHHHHHHH
Confidence 999999999999999999999999986 77888888775
No 8
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.7e-61 Score=411.10 Aligned_cols=375 Identities=30% Similarity=0.526 Sum_probs=331.4
Q ss_pred ccccccCccCCcccCCCCHHHHHHHHHhcCCCCCcHHHHHHHHHhhcCCCEEEEccCCChHhHHHHHHHHHHHhhcCCCC
Q 010357 9 ETVKEIFASCSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRI 88 (512)
Q Consensus 9 ~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~ 88 (512)
++.+.+....+|+++||++++++.++. +||+.|+.+|++|++.+++|++++.++..|+|||.+|.+.+++.+.-.
T Consensus 18 eTs~~~~v~~~F~~Mgl~edlLrgiY~-yGfekPS~IQqrAi~~IlkGrdViaQaqSGTGKTa~~si~vlq~~d~~---- 92 (400)
T KOG0328|consen 18 ETSEKVKVIPTFDDMGLKEDLLRGIYA-YGFEKPSAIQQRAIPQILKGRDVIAQAQSGTGKTATFSISVLQSLDIS---- 92 (400)
T ss_pred eeccCcccccchhhcCchHHHHHHHHH-hccCCchHHHhhhhhhhhcccceEEEecCCCCceEEEEeeeeeecccc----
Confidence 345667788899999999999999985 699999999999999999999999999999999999988777765431
Q ss_pred CCCCCceEEEEcCcHHHHHHHHHHHHHHHhhcCCcceEEEeCCCchHHHHHHHcCCCCEEEeCChHHHHHHhhcCCCcCC
Q 010357 89 DRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHT 168 (512)
Q Consensus 89 ~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~ 168 (512)
....++++++|||+|+.|+.+.+..++...+ ...-.+.||.+.......+..+.+++.+||+++++.++. ..+.-.
T Consensus 93 --~r~tQ~lilsPTRELa~Qi~~vi~alg~~mn-vq~hacigg~n~gedikkld~G~hvVsGtPGrv~dmikr-~~L~tr 168 (400)
T KOG0328|consen 93 --VRETQALILSPTRELAVQIQKVILALGDYMN-VQCHACIGGKNLGEDIKKLDYGQHVVSGTPGRVLDMIKR-RSLRTR 168 (400)
T ss_pred --cceeeEEEecChHHHHHHHHHHHHHhccccc-ceEEEEecCCccchhhhhhcccceEeeCCCchHHHHHHh-cccccc
Confidence 1246799999999999999999999987765 444567788888888888889999999999999999987 556567
Q ss_pred ceeEEEEcchhHHHhcCchHHHHHHHHHhccCCCCCCCCCCcccccceeEEEEEEecchhhHHHHHhhcCCCeEEccCCC
Q 010357 169 NLRWIIFDEADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEK 248 (512)
Q Consensus 169 ~~~~lV~DEah~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~ 248 (512)
.++++|+||||.+++.+|..++..+++.+|+ ..|++++|||+|..+....+.++.+|..+.+...
T Consensus 169 ~vkmlVLDEaDemL~kgfk~Qiydiyr~lp~---------------~~Qvv~~SATlp~eilemt~kfmtdpvrilvkrd 233 (400)
T KOG0328|consen 169 AVKMLVLDEADEMLNKGFKEQIYDIYRYLPP---------------GAQVVLVSATLPHEILEMTEKFMTDPVRILVKRD 233 (400)
T ss_pred ceeEEEeccHHHHHHhhHHHHHHHHHHhCCC---------------CceEEEEeccCcHHHHHHHHHhcCCceeEEEecC
Confidence 8999999999999999999999999999998 8999999999999999999999999998877766
Q ss_pred cCCCCccccccCCcccchhhhccCCCccccccccccccccceeeeEEEecCCc-hHHHHHHHHHhhhccccCceEEEEee
Q 010357 249 KLPEDKSHVRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCGS-RLAVLLSILKHLFDTEVSQKLVVFFS 327 (512)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-k~~~l~~~l~~~~~~~~~~~~lvf~~ 327 (512)
.++ .+.+.++++.+..++ |...|+++-..+ .-..++||||
T Consensus 234 elt-----------------------------------lEgIKqf~v~ve~EewKfdtLcdLYd~L----tItQavIFcn 274 (400)
T KOG0328|consen 234 ELT-----------------------------------LEGIKQFFVAVEKEEWKFDTLCDLYDTL----TITQAVIFCN 274 (400)
T ss_pred CCc-----------------------------------hhhhhhheeeechhhhhHhHHHHHhhhh----ehheEEEEec
Confidence 532 455778888886655 877777765543 3468999999
Q ss_pred cchhhhhHHHhhhhhcCCCCCCChhHHHhhhhccceeeecCCCCHHHHHHHHHhhhcCCCcEEEeecccccCCCCCCCcE
Q 010357 328 TCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKC 407 (512)
Q Consensus 328 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~l~g~~~~~~r~~~~~~f~~~~~~vLvaT~~~~~Gldip~~~~ 407 (512)
++..+.++.+.+++. .+.+..+||+|+.++|+++++.|++|+.+||++|++-++|+|+|.+++
T Consensus 275 Tk~kVdwLtekm~~~-----------------nftVssmHGDm~qkERd~im~dFRsg~SrvLitTDVwaRGiDv~qVsl 337 (400)
T KOG0328|consen 275 TKRKVDWLTEKMREA-----------------NFTVSSMHGDMEQKERDKIMNDFRSGKSRVLITTDVWARGIDVQQVSL 337 (400)
T ss_pred ccchhhHHHHHHHhh-----------------CceeeeccCCcchhHHHHHHHHhhcCCceEEEEechhhccCCcceeEE
Confidence 999999999999988 788999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCChhHHHHhhhhcccCCCCccEEEecCccchhHHHHHHHc-CCCCCccCh
Q 010357 408 IIQYDSAGEATEYVHRVGRTARLGERGDSLLFLQPVEMDYLQDLEKH-GVSLTEYPL 463 (512)
Q Consensus 408 VI~~~~p~s~~~~~Q~~GRagR~g~~g~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~ 463 (512)
||+||.|.+.+.|+||+||+||.|++|.++.|+..+|...++.+++. ...+.++|.
T Consensus 338 viNYDLP~nre~YIHRIGRSGRFGRkGvainFVk~~d~~~lrdieq~yst~i~emp~ 394 (400)
T KOG0328|consen 338 VINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDLRILRDIEQYYSTQIDEMPM 394 (400)
T ss_pred EEecCCCccHHHHhhhhccccccCCcceEEEEecHHHHHHHHHHHHHHhhhcccccc
Confidence 99999999999999999999999999999999999999999999885 555555554
No 9
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=100.00 E-value=1.9e-60 Score=441.92 Aligned_cols=375 Identities=39% Similarity=0.657 Sum_probs=342.3
Q ss_pred cCCcccCCCCHHHHHHHHHhcCCCCCcHHHHHHHHHhhcCCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceE
Q 010357 17 SCSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFA 96 (512)
Q Consensus 17 ~~~~~~~~l~~~~~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (512)
-..|+.++++....+.|++. +|..++.+|+.+++..++|++++-.|.||||||++|+.|+++.+.+.. +....|.-+
T Consensus 68 ~~kF~dlpls~~t~kgLke~-~fv~~teiQ~~~Ip~aL~G~DvlGAAkTGSGKTLAFlvPvlE~L~r~k--Ws~~DGlGa 144 (758)
T KOG0343|consen 68 IKKFADLPLSQKTLKGLKEA-KFVKMTEIQRDTIPMALQGHDVLGAAKTGSGKTLAFLVPVLEALYRLK--WSPTDGLGA 144 (758)
T ss_pred hhhHHhCCCchHHHHhHhhc-CCccHHHHHHhhcchhccCcccccccccCCCceeeehHHHHHHHHHcC--CCCCCCcee
Confidence 34799999999999999876 999999999999999999999999999999999999999999997743 233457779
Q ss_pred EEEcCcHHHHHHHHHHHHHHHhhcCCcceEEEeCCCchHHHHHHHcCCCCEEEeCChHHHHHHhhcCCCcCCceeEEEEc
Q 010357 97 LVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFD 176 (512)
Q Consensus 97 lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lV~D 176 (512)
|||+|||+||.|+++.+.+.+.... .+.+.+.||.+...+..++ .+++|+||||++|+.++.....+..+++.++|+|
T Consensus 145 lIISPTRELA~QtFevL~kvgk~h~-fSaGLiiGG~~~k~E~eRi-~~mNILVCTPGRLLQHmde~~~f~t~~lQmLvLD 222 (758)
T KOG0343|consen 145 LIISPTRELALQTFEVLNKVGKHHD-FSAGLIIGGKDVKFELERI-SQMNILVCTPGRLLQHMDENPNFSTSNLQMLVLD 222 (758)
T ss_pred EEecchHHHHHHHHHHHHHHhhccc-cccceeecCchhHHHHHhh-hcCCeEEechHHHHHHhhhcCCCCCCcceEEEec
Confidence 9999999999999999999987654 7788999999877776665 5689999999999999999899988999999999
Q ss_pred chhHHHhcCchHHHHHHHHHhccCCCCCCCCCCcccccceeEEEEEEecchhhHHHHHhhcCCCeEEccCCCcCCCCccc
Q 010357 177 EADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLPEDKSH 256 (512)
Q Consensus 177 Eah~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (512)
|||++++.||...+..|+..+|. .+|.+++|||.+..+..++++.+.+|.++++-...
T Consensus 223 EADR~LDMGFk~tL~~Ii~~lP~---------------~RQTLLFSATqt~svkdLaRLsL~dP~~vsvhe~a------- 280 (758)
T KOG0343|consen 223 EADRMLDMGFKKTLNAIIENLPK---------------KRQTLLFSATQTKSVKDLARLSLKDPVYVSVHENA------- 280 (758)
T ss_pred cHHHHHHHhHHHHHHHHHHhCCh---------------hheeeeeecccchhHHHHHHhhcCCCcEEEEeccc-------
Confidence 99999999999999999999998 89999999999999999999999999998776332
Q ss_pred cccCCcccchhhhccCCCccccccccccccccceeeeEEEecCCchHHHHHHHHHhhhccccCceEEEEeecchhhhhHH
Q 010357 257 VRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHY 336 (512)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~ 336 (512)
....|.++.++|+.++...|+..|..+|..+ ...+.|||.+|.+++..++
T Consensus 281 --------------------------~~atP~~L~Q~y~~v~l~~Ki~~L~sFI~sh----lk~K~iVF~SscKqvkf~~ 330 (758)
T KOG0343|consen 281 --------------------------VAATPSNLQQSYVIVPLEDKIDMLWSFIKSH----LKKKSIVFLSSCKQVKFLY 330 (758)
T ss_pred --------------------------cccChhhhhheEEEEehhhHHHHHHHHHHhc----cccceEEEEehhhHHHHHH
Confidence 1356889999999999999999999999975 4689999999999999999
Q ss_pred HhhhhhcCCCCCCChhHHHhhhhccceeeecCCCCHHHHHHHHHhhhcCCCcEEEeecccccCCCCCCCcEEEEeCCCCC
Q 010357 337 SLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGE 416 (512)
Q Consensus 337 ~~l~~~~~~~~~~~~~~~~~~~~~~~v~~l~g~~~~~~r~~~~~~f~~~~~~vLvaT~~~~~Gldip~~~~VI~~~~p~s 416 (512)
+.+.+.. ||.++..+||.|++..|..+...|......||+||+++++|+|+|.+++||++|.|.+
T Consensus 331 e~F~rlr---------------pg~~l~~L~G~~~Q~~R~ev~~~F~~~~~~vLF~TDv~aRGLDFpaVdwViQ~DCPed 395 (758)
T KOG0343|consen 331 EAFCRLR---------------PGIPLLALHGTMSQKKRIEVYKKFVRKRAVVLFCTDVAARGLDFPAVDWVIQVDCPED 395 (758)
T ss_pred HHHHhcC---------------CCCceeeeccchhHHHHHHHHHHHHHhcceEEEeehhhhccCCCcccceEEEecCchh
Confidence 9999874 3889999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHhhhhcccCCCCccEEEecCccc-hhHHHHHHHcCCCCCccCh
Q 010357 417 ATEYVHRVGRTARLGERGDSLLFLQPVE-MDYLQDLEKHGVSLTEYPL 463 (512)
Q Consensus 417 ~~~~~Q~~GRagR~g~~g~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ 463 (512)
+.+|+||+||++|.+..|.+.+++.|++ ...+..|+++++++.++.+
T Consensus 396 v~tYIHRvGRtAR~~~~G~sll~L~psEeE~~l~~Lq~k~I~i~~i~i 443 (758)
T KOG0343|consen 396 VDTYIHRVGRTARYKERGESLLMLTPSEEEAMLKKLQKKKIPIKEIKI 443 (758)
T ss_pred HHHHHHHhhhhhcccCCCceEEEEcchhHHHHHHHHHHcCCCHHhhcc
Confidence 9999999999999999999999999988 6788889988888877754
No 10
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=6.6e-60 Score=430.86 Aligned_cols=375 Identities=35% Similarity=0.623 Sum_probs=329.7
Q ss_pred CCcccCC--CCHHHHHHHHHhcCCCCCcHHHHHHHHHhhcCCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCce
Q 010357 18 CSFSSLG--LHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTF 95 (512)
Q Consensus 18 ~~~~~~~--l~~~~~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (512)
..|++++ |++++..++ +.+||...||+|..++|.+++++++++.++||||||++|++|+++.+.+...+.... ...
T Consensus 4 ~~~~~l~~~L~~~l~~~l-~~~GF~~mTpVQa~tIPlll~~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~~~-~vg 81 (567)
T KOG0345|consen 4 KSFSSLAPPLSPWLLEAL-DESGFEKMTPVQAATIPLLLKNKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTPPG-QVG 81 (567)
T ss_pred cchhhcCCCccHHHHHHH-HhcCCcccCHHHHhhhHHHhcCCceEEEcCCCCCchhhHHHHHHHHHHhhccCCCcc-cee
Confidence 4677775 459999999 677999999999999999999999999999999999999999999996654432222 346
Q ss_pred EEEEcCcHHHHHHHHHHHHHHHhhcCCcceEEEeCCCchHHHHHHHc-CCCCEEEeCChHHHHHHhh-cCCCcCCceeEE
Q 010357 96 ALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLR-KGISILVATPGRLLDHLKH-TSSFLHTNLRWI 173 (512)
Q Consensus 96 ~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~Iiv~Tp~~l~~~l~~-~~~~~~~~~~~l 173 (512)
++||+|||+|+.|+.+.+..+...+.......+.||.+.......+. .+++|+|+||++|.+++.+ ...+.+.++.++
T Consensus 82 alIIsPTRELa~QI~~V~~~F~~~l~~l~~~l~vGG~~v~~Di~~fkee~~nIlVgTPGRL~di~~~~~~~l~~rsLe~L 161 (567)
T KOG0345|consen 82 ALIISPTRELARQIREVAQPFLEHLPNLNCELLVGGRSVEEDIKTFKEEGPNILVGTPGRLLDILQREAEKLSFRSLEIL 161 (567)
T ss_pred EEEecCcHHHHHHHHHHHHHHHHhhhccceEEEecCccHHHHHHHHHHhCCcEEEeCchhHHHHHhchhhhccccccceE
Confidence 99999999999999999999998877777788888887777666554 5589999999999999987 344556689999
Q ss_pred EEcchhHHHhcCchHHHHHHHHHhccCCCCCCCCCCcccccceeEEEEEEecchhhHHHHHhhcCCCeEEccCCCcCCCC
Q 010357 174 IFDEADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLPED 253 (512)
Q Consensus 174 V~DEah~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (512)
|+||||++++.+|...+..|++.+|+ .++.=++|||....+..+....+.+|..+.+......
T Consensus 162 VLDEADrLldmgFe~~~n~ILs~LPK---------------QRRTGLFSATq~~~v~dL~raGLRNpv~V~V~~k~~~-- 224 (567)
T KOG0345|consen 162 VLDEADRLLDMGFEASVNTILSFLPK---------------QRRTGLFSATQTQEVEDLARAGLRNPVRVSVKEKSKS-- 224 (567)
T ss_pred EecchHhHhcccHHHHHHHHHHhccc---------------ccccccccchhhHHHHHHHHhhccCceeeeecccccc--
Confidence 99999999999999999999999998 7888899999999999999999999999887766411
Q ss_pred ccccccCCcccchhhhccCCCccccccccccccccceeeeEEEecCCchHHHHHHHHHhhhccccCceEEEEeecchhhh
Q 010357 254 KSHVRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVD 333 (512)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~lvf~~~~~~~~ 333 (512)
..|..+...|..+.+.+|...+++++.. ....++|||.+|-..++
T Consensus 225 -------------------------------~tPS~L~~~Y~v~~a~eK~~~lv~~L~~----~~~kK~iVFF~TCasVe 269 (567)
T KOG0345|consen 225 -------------------------------ATPSSLALEYLVCEADEKLSQLVHLLNN----NKDKKCIVFFPTCASVE 269 (567)
T ss_pred -------------------------------cCchhhcceeeEecHHHHHHHHHHHHhc----cccccEEEEecCcchHH
Confidence 1466677889999999999999999985 45689999999999999
Q ss_pred hHHHhhhhhcCCCCCCChhHHHhhhhccceeeecCCCCHHHHHHHHHhhhcCCCcEEEeecccccCCCCCCCcEEEEeCC
Q 010357 334 FHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDS 413 (512)
Q Consensus 334 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~l~g~~~~~~r~~~~~~f~~~~~~vLvaT~~~~~Gldip~~~~VI~~~~ 413 (512)
.++..+..+ ++...++.+||.|....|..++..|++....+|+|||++++|+|+|++++||+||+
T Consensus 270 Yf~~~~~~~---------------l~~~~i~~iHGK~~q~~R~k~~~~F~~~~~~vl~~TDVaARGlDip~iD~VvQ~Dp 334 (567)
T KOG0345|consen 270 YFGKLFSRL---------------LKKREIFSIHGKMSQKARAKVLEAFRKLSNGVLFCTDVAARGLDIPGIDLVVQFDP 334 (567)
T ss_pred HHHHHHHHH---------------hCCCcEEEecchhcchhHHHHHHHHHhccCceEEeehhhhccCCCCCceEEEecCC
Confidence 999999876 23778999999999999999999999988899999999999999999999999999
Q ss_pred CCChhHHHHhhhhcccCCCCccEEEecCccchhHHHHHHHcC-CCCCcc
Q 010357 414 AGEATEYVHRVGRTARLGERGDSLLFLQPVEMDYLQDLEKHG-VSLTEY 461 (512)
Q Consensus 414 p~s~~~~~Q~~GRagR~g~~g~~~~~~~~~~~~~~~~l~~~~-~~~~~~ 461 (512)
|.++..|.||.||+||.|+.|.+++|+.+.+..++..+.-.+ ..++++
T Consensus 335 P~~~~~FvHR~GRTaR~gr~G~Aivfl~p~E~aYveFl~i~~~v~le~~ 383 (567)
T KOG0345|consen 335 PKDPSSFVHRCGRTARAGREGNAIVFLNPREEAYVEFLRIKGKVELERI 383 (567)
T ss_pred CCChhHHHhhcchhhhccCccceEEEecccHHHHHHHHHhcCccchhhh
Confidence 999999999999999999999999999999999999988875 444443
No 11
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=100.00 E-value=2e-59 Score=468.85 Aligned_cols=358 Identities=34% Similarity=0.506 Sum_probs=316.9
Q ss_pred cCCcccCCCCHHHHHHHHHhcCCCCCcHHHHHHHHHhhcCCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceE
Q 010357 17 SCSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFA 96 (512)
Q Consensus 17 ~~~~~~~~l~~~~~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (512)
..+|+++++++++.+.+ +.+||.+|+|+|++|++.+++|+|++++||||||||++|++|+++.+.... ...++
T Consensus 3 ~~~f~~l~l~~~l~~~l-~~~g~~~~t~iQ~~ai~~~l~g~dvi~~a~TGsGKT~a~~lpil~~l~~~~------~~~~~ 75 (460)
T PRK11776 3 MTAFSTLPLPPALLANL-NELGYTEMTPIQAQSLPAILAGKDVIAQAKTGSGKTAAFGLGLLQKLDVKR------FRVQA 75 (460)
T ss_pred CCChhhcCCCHHHHHHH-HHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHhhhcc------CCceE
Confidence 56899999999999999 567999999999999999999999999999999999999999999875421 24579
Q ss_pred EEEcCcHHHHHHHHHHHHHHHhhcCCcceEEEeCCCchHHHHHHHcCCCCEEEeCChHHHHHHhhcCCCcCCceeEEEEc
Q 010357 97 LVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFD 176 (512)
Q Consensus 97 lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lV~D 176 (512)
+|++||++|+.|+.+.++.+........+..++||.........+..+++|+|+||+++.+++.. ..+.++++++||+|
T Consensus 76 lil~PtreLa~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~l~~~~~IvV~Tp~rl~~~l~~-~~~~l~~l~~lViD 154 (460)
T PRK11776 76 LVLCPTRELADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDSLEHGAHIIVGTPGRILDHLRK-GTLDLDALNTLVLD 154 (460)
T ss_pred EEEeCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCChHHHHHHhcCCCCEEEEChHHHHHHHHc-CCccHHHCCEEEEE
Confidence 99999999999999999998776555677778899988888888888899999999999999876 55667899999999
Q ss_pred chhHHHhcCchHHHHHHHHHhccCCCCCCCCCCcccccceeEEEEEEecchhhHHHHHhhcCCCeEEccCCCcCCCCccc
Q 010357 177 EADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLPEDKSH 256 (512)
Q Consensus 177 Eah~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (512)
|||++.+.+|...+..++..++. ..|++++|||+++....+...++.++..+......
T Consensus 155 Ead~~l~~g~~~~l~~i~~~~~~---------------~~q~ll~SAT~~~~~~~l~~~~~~~~~~i~~~~~~------- 212 (460)
T PRK11776 155 EADRMLDMGFQDAIDAIIRQAPA---------------RRQTLLFSATYPEGIAAISQRFQRDPVEVKVESTH------- 212 (460)
T ss_pred CHHHHhCcCcHHHHHHHHHhCCc---------------ccEEEEEEecCcHHHHHHHHHhcCCCEEEEECcCC-------
Confidence 99999999999999999998876 78999999999999999888888888766554331
Q ss_pred cccCCcccchhhhccCCCccccccccccccccceeeeEEEecCCchHHHHHHHHHhhhccccCceEEEEeecchhhhhHH
Q 010357 257 VRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHY 336 (512)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~ 336 (512)
....+.+.+..++...|...+..++.. ..+.++||||+++..++.++
T Consensus 213 -----------------------------~~~~i~~~~~~~~~~~k~~~l~~ll~~----~~~~~~lVF~~t~~~~~~l~ 259 (460)
T PRK11776 213 -----------------------------DLPAIEQRFYEVSPDERLPALQRLLLH----HQPESCVVFCNTKKECQEVA 259 (460)
T ss_pred -----------------------------CCCCeeEEEEEeCcHHHHHHHHHHHHh----cCCCceEEEECCHHHHHHHH
Confidence 122355667777777788877777764 34578999999999999999
Q ss_pred HhhhhhcCCCCCCChhHHHhhhhccceeeecCCCCHHHHHHHHHhhhcCCCcEEEeecccccCCCCCCCcEEEEeCCCCC
Q 010357 337 SLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGE 416 (512)
Q Consensus 337 ~~l~~~~~~~~~~~~~~~~~~~~~~~v~~l~g~~~~~~r~~~~~~f~~~~~~vLvaT~~~~~Gldip~~~~VI~~~~p~s 416 (512)
+.|... ++.+..+||+|++.+|+.+++.|++|+.+|||||+++++|+|+|++++||+|+.|.+
T Consensus 260 ~~L~~~-----------------~~~v~~~hg~~~~~eR~~~l~~F~~g~~~vLVaTdv~~rGiDi~~v~~VI~~d~p~~ 322 (460)
T PRK11776 260 DALNAQ-----------------GFSALALHGDLEQRDRDQVLVRFANRSCSVLVATDVAARGLDIKALEAVINYELARD 322 (460)
T ss_pred HHHHhC-----------------CCcEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEecccccccchhcCCeEEEecCCCC
Confidence 999887 788999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHhhhhcccCCCCccEEEecCccchhHHHHHHHc
Q 010357 417 ATEYVHRVGRTARLGERGDSLLFLQPVEMDYLQDLEKH 454 (512)
Q Consensus 417 ~~~~~Q~~GRagR~g~~g~~~~~~~~~~~~~~~~l~~~ 454 (512)
..+|+||+||+||.|+.|.+++|+.+.|...++.+.+.
T Consensus 323 ~~~yiqR~GRtGR~g~~G~ai~l~~~~e~~~~~~i~~~ 360 (460)
T PRK11776 323 PEVHVHRIGRTGRAGSKGLALSLVAPEEMQRANAIEDY 360 (460)
T ss_pred HhHhhhhcccccCCCCcceEEEEEchhHHHHHHHHHHH
Confidence 99999999999999999999999999998888777764
No 12
>PTZ00110 helicase; Provisional
Probab=100.00 E-value=3.1e-59 Score=471.10 Aligned_cols=366 Identities=33% Similarity=0.529 Sum_probs=311.9
Q ss_pred ccCCcccCCCCHHHHHHHHHhcCCCCCcHHHHHHHHHhhcCCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCce
Q 010357 16 ASCSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTF 95 (512)
Q Consensus 16 ~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (512)
+..+|+++++++++.+.+. .+||.+|+++|.+++|.+++|+++++++|||||||++|++|++..+..... .....++.
T Consensus 128 p~~~f~~~~l~~~l~~~l~-~~g~~~pt~iQ~~aip~~l~G~dvI~~ApTGSGKTlaylLP~l~~i~~~~~-~~~~~gp~ 205 (545)
T PTZ00110 128 PVVSFEYTSFPDYILKSLK-NAGFTEPTPIQVQGWPIALSGRDMIGIAETGSGKTLAFLLPAIVHINAQPL-LRYGDGPI 205 (545)
T ss_pred ccCCHhhcCCCHHHHHHHH-HCCCCCCCHHHHHHHHHHhcCCCEEEEeCCCChHHHHHHHHHHHHHHhccc-ccCCCCcE
Confidence 4568999999999999995 679999999999999999999999999999999999999999888765321 12234678
Q ss_pred EEEEcCcHHHHHHHHHHHHHHHhhcCCcceEEEeCCCchHHHHHHHcCCCCEEEeCChHHHHHHhhcCCCcCCceeEEEE
Q 010357 96 ALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIF 175 (512)
Q Consensus 96 ~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lV~ 175 (512)
+|||+||++|+.|+.+.+..+....+ .....+++|.....+...+..+++|+|+||++|.+++.. ....+.++++||+
T Consensus 206 ~LIL~PTreLa~Qi~~~~~~~~~~~~-i~~~~~~gg~~~~~q~~~l~~~~~IlVaTPgrL~d~l~~-~~~~l~~v~~lVi 283 (545)
T PTZ00110 206 VLVLAPTRELAEQIREQCNKFGASSK-IRNTVAYGGVPKRGQIYALRRGVEILIACPGRLIDFLES-NVTNLRRVTYLVL 283 (545)
T ss_pred EEEECChHHHHHHHHHHHHHHhcccC-ccEEEEeCCCCHHHHHHHHHcCCCEEEECHHHHHHHHHc-CCCChhhCcEEEe
Confidence 99999999999999999999877554 455677888888888888888899999999999999876 5566789999999
Q ss_pred cchhHHHhcCchHHHHHHHHHhccCCCCCCCCCCcccccceeEEEEEEecchhhHHHHHhhcC-CCeEEccCCCcCCCCc
Q 010357 176 DEADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLE-TPVLIGLDEKKLPEDK 254 (512)
Q Consensus 176 DEah~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 254 (512)
||||++++.+|...+..++..++. ..|++++|||++..+..+...++. .+..+.+....
T Consensus 284 DEAd~mld~gf~~~i~~il~~~~~---------------~~q~l~~SAT~p~~v~~l~~~l~~~~~v~i~vg~~~----- 343 (545)
T PTZ00110 284 DEADRMLDMGFEPQIRKIVSQIRP---------------DRQTLMWSATWPKEVQSLARDLCKEEPVHVNVGSLD----- 343 (545)
T ss_pred ehHHhhhhcchHHHHHHHHHhCCC---------------CCeEEEEEeCCCHHHHHHHHHHhccCCEEEEECCCc-----
Confidence 999999999999999999988765 789999999999988888776664 34444332211
Q ss_pred cccccCCcccchhhhccCCCccccccccccccccceeeeEEEecCCchHHHHHHHHHhhhccccCceEEEEeecchhhhh
Q 010357 255 SHVRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDF 334 (512)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~lvf~~~~~~~~~ 334 (512)
.....++.+.+..+...+|...+..++..... .+.++||||++++.++.
T Consensus 344 -----------------------------l~~~~~i~q~~~~~~~~~k~~~L~~ll~~~~~--~~~k~LIF~~t~~~a~~ 392 (545)
T PTZ00110 344 -----------------------------LTACHNIKQEVFVVEEHEKRGKLKMLLQRIMR--DGDKILIFVETKKGADF 392 (545)
T ss_pred -----------------------------cccCCCeeEEEEEEechhHHHHHHHHHHHhcc--cCCeEEEEecChHHHHH
Confidence 01123445566666677788888888877642 56799999999999999
Q ss_pred HHHhhhhhcCCCCCCChhHHHhhhhccceeeecCCCCHHHHHHHHHhhhcCCCcEEEeecccccCCCCCCCcEEEEeCCC
Q 010357 335 HYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSA 414 (512)
Q Consensus 335 l~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~l~g~~~~~~r~~~~~~f~~~~~~vLvaT~~~~~Gldip~~~~VI~~~~p 414 (512)
++..|... ++.+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|++++||+|+.|
T Consensus 393 l~~~L~~~-----------------g~~~~~ihg~~~~~eR~~il~~F~~G~~~ILVaTdv~~rGIDi~~v~~VI~~d~P 455 (545)
T PTZ00110 393 LTKELRLD-----------------GWPALCIHGDKKQEERTWVLNEFKTGKSPIMIATDVASRGLDVKDVKYVINFDFP 455 (545)
T ss_pred HHHHHHHc-----------------CCcEEEEECCCcHHHHHHHHHHHhcCCCcEEEEcchhhcCCCcccCCEEEEeCCC
Confidence 99999876 7788999999999999999999999999999999999999999999999999999
Q ss_pred CChhHHHHhhhhcccCCCCccEEEecCccchhHHHHHHH
Q 010357 415 GEATEYVHRVGRTARLGERGDSLLFLQPVEMDYLQDLEK 453 (512)
Q Consensus 415 ~s~~~~~Q~~GRagR~g~~g~~~~~~~~~~~~~~~~l~~ 453 (512)
.+..+|+||+||+||.|+.|.+++|+++++...++.+.+
T Consensus 456 ~s~~~yvqRiGRtGR~G~~G~ai~~~~~~~~~~~~~l~~ 494 (545)
T PTZ00110 456 NQIEDYVHRIGRTGRAGAKGASYTFLTPDKYRLARDLVK 494 (545)
T ss_pred CCHHHHHHHhcccccCCCCceEEEEECcchHHHHHHHHH
Confidence 999999999999999999999999999998766665554
No 13
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=100.00 E-value=3.3e-59 Score=464.74 Aligned_cols=363 Identities=33% Similarity=0.533 Sum_probs=307.8
Q ss_pred CCcccCCCCHHHHHHHHHhcCCCCCcHHHHHHHHHhhcCCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEE
Q 010357 18 CSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFAL 97 (512)
Q Consensus 18 ~~~~~~~l~~~~~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~l 97 (512)
++|++++|++++.+.+. .+||.+|+++|+++++.+++++|+++++|||||||++|++|+++.+.............++|
T Consensus 1 ~~f~~l~l~~~l~~~l~-~~g~~~pt~iQ~~ai~~il~g~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~aL 79 (456)
T PRK10590 1 MSFDSLGLSPDILRAVA-EQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRAL 79 (456)
T ss_pred CCHHHcCCCHHHHHHHH-HCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHhhhcccccccCCCceEE
Confidence 37999999999999995 57999999999999999999999999999999999999999999986643322222346799
Q ss_pred EEcCcHHHHHHHHHHHHHHHhhcCCcceEEEeCCCchHHHHHHHcCCCCEEEeCChHHHHHHhhcCCCcCCceeEEEEcc
Q 010357 98 VLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDE 177 (512)
Q Consensus 98 il~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lV~DE 177 (512)
|++||++|+.|+.+.+..+....+ .....+++|.........+...++|+|+||++|++++.. ..+.++++++||+||
T Consensus 80 il~PtreLa~Qi~~~~~~~~~~~~-~~~~~~~gg~~~~~~~~~l~~~~~IiV~TP~rL~~~~~~-~~~~l~~v~~lViDE 157 (456)
T PRK10590 80 ILTPTRELAAQIGENVRDYSKYLN-IRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQ-NAVKLDQVEILVLDE 157 (456)
T ss_pred EEeCcHHHHHHHHHHHHHHhccCC-CEEEEEECCcCHHHHHHHHcCCCcEEEEChHHHHHHHHc-CCcccccceEEEeec
Confidence 999999999999999999877655 445567788887777778888899999999999998765 556678999999999
Q ss_pred hhHHHhcCchHHHHHHHHHhccCCCCCCCCCCcccccceeEEEEEEecchhhHHHHHhhcCCCeEEccCCCcCCCCcccc
Q 010357 178 ADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLPEDKSHV 257 (512)
Q Consensus 178 ah~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (512)
||++++++|...+..++..++. ..|++++|||+++.+..+....+.++..+.+....
T Consensus 158 ah~ll~~~~~~~i~~il~~l~~---------------~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~-------- 214 (456)
T PRK10590 158 ADRMLDMGFIHDIRRVLAKLPA---------------KRQNLLFSATFSDDIKALAEKLLHNPLEIEVARRN-------- 214 (456)
T ss_pred HHHHhccccHHHHHHHHHhCCc---------------cCeEEEEeCCCcHHHHHHHHHHcCCCeEEEEeccc--------
Confidence 9999999999999999988875 77999999999998888888888877765443221
Q ss_pred ccCCcccchhhhccCCCccccccccccccccceeeeEEEecCCchHHHHHHHHHhhhccccCceEEEEeecchhhhhHHH
Q 010357 258 RFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYS 337 (512)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~ 337 (512)
.....+.+.+..++...+...+..++. .....++||||+++..++.+++
T Consensus 215 ---------------------------~~~~~i~~~~~~~~~~~k~~~l~~l~~----~~~~~~~lVF~~t~~~~~~l~~ 263 (456)
T PRK10590 215 ---------------------------TASEQVTQHVHFVDKKRKRELLSQMIG----KGNWQQVLVFTRTKHGANHLAE 263 (456)
T ss_pred ---------------------------ccccceeEEEEEcCHHHHHHHHHHHHH----cCCCCcEEEEcCcHHHHHHHHH
Confidence 112234444444544445444444433 3445799999999999999999
Q ss_pred hhhhhcCCCCCCChhHHHhhhhccceeeecCCCCHHHHHHHHHhhhcCCCcEEEeecccccCCCCCCCcEEEEeCCCCCh
Q 010357 338 LLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEA 417 (512)
Q Consensus 338 ~l~~~~~~~~~~~~~~~~~~~~~~~v~~l~g~~~~~~r~~~~~~f~~~~~~vLvaT~~~~~Gldip~~~~VI~~~~p~s~ 417 (512)
.|... ++.+..+||+|+..+|..+++.|++|+++|||||+++++|+|+|++++||+|+.|.++
T Consensus 264 ~L~~~-----------------g~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaTdv~~rGiDip~v~~VI~~~~P~~~ 326 (456)
T PRK10590 264 QLNKD-----------------GIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNYELPNVP 326 (456)
T ss_pred HHHHC-----------------CCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEccHHhcCCCcccCCEEEEeCCCCCH
Confidence 99876 7889999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHhhhhcccCCCCccEEEecCccchhHHHHHHHc
Q 010357 418 TEYVHRVGRTARLGERGDSLLFLQPVEMDYLQDLEKH 454 (512)
Q Consensus 418 ~~~~Q~~GRagR~g~~g~~~~~~~~~~~~~~~~l~~~ 454 (512)
.+|+||+||+||.|..|.+++|+..+|...++.+++.
T Consensus 327 ~~yvqR~GRaGR~g~~G~ai~l~~~~d~~~~~~ie~~ 363 (456)
T PRK10590 327 EDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKL 363 (456)
T ss_pred HHhhhhccccccCCCCeeEEEEecHHHHHHHHHHHHH
Confidence 9999999999999999999999999998888888774
No 14
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=1.1e-58 Score=468.44 Aligned_cols=374 Identities=33% Similarity=0.478 Sum_probs=314.9
Q ss_pred cCCcccCCCCHHHHHHHHHhcCCCCCcHHHHHHHHHhhcCCCEEEEccCCChHhHHHHHHHHHHHhhcCCCC-CCCCCce
Q 010357 17 SCSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRI-DRSSGTF 95 (512)
Q Consensus 17 ~~~~~~~~l~~~~~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~-~~~~~~~ 95 (512)
..+|++++|++++++.|. .+||..|+++|.++++.+++|+|+++++|||||||++|++|+++.+....... ......+
T Consensus 8 ~~~f~~l~l~~~l~~~L~-~~g~~~ptpiQ~~~ip~~l~G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~~~~~~~~r 86 (572)
T PRK04537 8 DLTFSSFDLHPALLAGLE-SAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDPR 86 (572)
T ss_pred CCChhhcCCCHHHHHHHH-HCCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCcHHHHHHHHHHHHHHhcccccccccCCce
Confidence 357999999999999995 67999999999999999999999999999999999999999999886532211 1123578
Q ss_pred EEEEcCcHHHHHHHHHHHHHHHhhcCCcceEEEeCCCchHHHHHHHcCCCCEEEeCChHHHHHHhhcCCCcCCceeEEEE
Q 010357 96 ALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIF 175 (512)
Q Consensus 96 ~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lV~ 175 (512)
+||++||++|+.|+++.+..++...+ +.+..+++|.....+...+..+++|+|+||++|++++.....+.+..+++|||
T Consensus 87 aLIl~PTreLa~Qi~~~~~~l~~~~~-i~v~~l~Gg~~~~~q~~~l~~~~dIiV~TP~rL~~~l~~~~~~~l~~v~~lVi 165 (572)
T PRK04537 87 ALILAPTRELAIQIHKDAVKFGADLG-LRFALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVL 165 (572)
T ss_pred EEEEeCcHHHHHHHHHHHHHHhccCC-ceEEEEECCCCHHHHHHHHhCCCCEEEECHHHHHHHHHhccccchhheeeeEe
Confidence 99999999999999999999887655 56677888988888888888889999999999999988766667788999999
Q ss_pred cchhHHHhcCchHHHHHHHHHhccCCCCCCCCCCcccccceeEEEEEEecchhhHHHHHhhcCCCeEEccCCCcCCCCcc
Q 010357 176 DEADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLPEDKS 255 (512)
Q Consensus 176 DEah~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (512)
||||++.+.+|...+..++..++... ..|++++|||++..+..+...++..+..+......
T Consensus 166 DEAh~lld~gf~~~i~~il~~lp~~~-------------~~q~ll~SATl~~~v~~l~~~~l~~p~~i~v~~~~------ 226 (572)
T PRK04537 166 DEADRMFDLGFIKDIRFLLRRMPERG-------------TRQTLLFSATLSHRVLELAYEHMNEPEKLVVETET------ 226 (572)
T ss_pred cCHHHHhhcchHHHHHHHHHhccccc-------------CceEEEEeCCccHHHHHHHHHHhcCCcEEEecccc------
Confidence 99999999999999999998887532 57899999999998888887777776554332221
Q ss_pred ccccCCcccchhhhccCCCccccccccccccccceeeeEEEecCCchHHHHHHHHHhhhccccCceEEEEeecchhhhhH
Q 010357 256 HVRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFH 335 (512)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~lvf~~~~~~~~~l 335 (512)
.....+.+.+.......|...+..++.. ..+.++||||+++..++.+
T Consensus 227 -----------------------------~~~~~i~q~~~~~~~~~k~~~L~~ll~~----~~~~k~LVF~nt~~~ae~l 273 (572)
T PRK04537 227 -----------------------------ITAARVRQRIYFPADEEKQTLLLGLLSR----SEGARTMVFVNTKAFVERV 273 (572)
T ss_pred -----------------------------ccccceeEEEEecCHHHHHHHHHHHHhc----ccCCcEEEEeCCHHHHHHH
Confidence 0122344555555556666666666543 4567999999999999999
Q ss_pred HHhhhhhcCCCCCCChhHHHhhhhccceeeecCCCCHHHHHHHHHhhhcCCCcEEEeecccccCCCCCCCcEEEEeCCCC
Q 010357 336 YSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAG 415 (512)
Q Consensus 336 ~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~l~g~~~~~~r~~~~~~f~~~~~~vLvaT~~~~~Gldip~~~~VI~~~~p~ 415 (512)
++.|... ++.+..+||+|+..+|..+++.|++|+.+|||||+++++|||+|++++||+|+.|.
T Consensus 274 ~~~L~~~-----------------g~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaTdv~arGIDip~V~~VInyd~P~ 336 (572)
T PRK04537 274 ARTLERH-----------------GYRVGVLSGDVPQKKRESLLNRFQKGQLEILVATDVAARGLHIDGVKYVYNYDLPF 336 (572)
T ss_pred HHHHHHc-----------------CCCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEehhhhcCCCccCCCEEEEcCCCC
Confidence 9999887 78899999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHhhhhcccCCCCccEEEecCccchhHHHHHHHc-CCCCCcc
Q 010357 416 EATEYVHRVGRTARLGERGDSLLFLQPVEMDYLQDLEKH-GVSLTEY 461 (512)
Q Consensus 416 s~~~~~Q~~GRagR~g~~g~~~~~~~~~~~~~~~~l~~~-~~~~~~~ 461 (512)
+..+|+||+||+||.|+.|.+++|+++.+...+..+++. +..++..
T Consensus 337 s~~~yvqRiGRaGR~G~~G~ai~~~~~~~~~~l~~i~~~~~~~~~~~ 383 (572)
T PRK04537 337 DAEDYVHRIGRTARLGEEGDAISFACERYAMSLPDIEAYIEQKIPVE 383 (572)
T ss_pred CHHHHhhhhcccccCCCCceEEEEecHHHHHHHHHHHHHHcCCCCcc
Confidence 999999999999999999999999999888888888764 3333333
No 15
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.4e-59 Score=414.09 Aligned_cols=374 Identities=34% Similarity=0.561 Sum_probs=330.0
Q ss_pred ccCCcccCCCCHHHHHHHHHhcCCCCCcHHHHHHHHHhhcCCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCce
Q 010357 16 ASCSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTF 95 (512)
Q Consensus 16 ~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (512)
...+|+.||+++|+.+.+ +.+|+..|+|+|+.|+|.|++|+|++-+|.||||||.+|.+|+++.|.... .+..
T Consensus 5 t~~~F~~LGl~~Wlve~l-~~l~i~~pTpiQ~~cIpkILeGrdcig~AkTGsGKT~AFaLPil~rLsedP------~giF 77 (442)
T KOG0340|consen 5 TAKPFSILGLSPWLVEQL-KALGIKKPTPIQQACIPKILEGRDCIGCAKTGSGKTAAFALPILNRLSEDP------YGIF 77 (442)
T ss_pred ccCchhhcCccHHHHHHH-HHhcCCCCCchHhhhhHHHhcccccccccccCCCcchhhhHHHHHhhccCC------Ccce
Confidence 457899999999999999 568999999999999999999999999999999999999999999987633 4788
Q ss_pred EEEEcCcHHHHHHHHHHHHHHHhhcCCcceEEEeCCCchHHHHHHHcCCCCEEEeCChHHHHHHhhc---CCCcCCceeE
Q 010357 96 ALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHT---SSFLHTNLRW 172 (512)
Q Consensus 96 ~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~---~~~~~~~~~~ 172 (512)
++|++|||+|+-|+.+.|..+....+ ....+++||.+.-.+...+...++++|+||+++.+++... -.+.++++.+
T Consensus 78 alvlTPTrELA~QiaEQF~alGk~l~-lK~~vivGG~d~i~qa~~L~~rPHvVvatPGRlad~l~sn~~~~~~~~~rlkf 156 (442)
T KOG0340|consen 78 ALVLTPTRELALQIAEQFIALGKLLN-LKVSVIVGGTDMIMQAAILSDRPHVVVATPGRLADHLSSNLGVCSWIFQRLKF 156 (442)
T ss_pred EEEecchHHHHHHHHHHHHHhccccc-ceEEEEEccHHHhhhhhhcccCCCeEecCccccccccccCCccchhhhhceee
Confidence 99999999999999999999887655 6677888999988888899999999999999999998875 3446788999
Q ss_pred EEEcchhHHHhcCchHHHHHHHHHhccCCCCCCCCCCcccccceeEEEEEEecchhhHHHHHhhcCCCeEEccCCCcCCC
Q 010357 173 IIFDEADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLPE 252 (512)
Q Consensus 173 lV~DEah~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (512)
+|+|||+++++..|...++.+..-+|. .+|.+++|||+++.+..........+..+.+
T Consensus 157 lVlDEADrvL~~~f~d~L~~i~e~lP~---------------~RQtLlfSATitd~i~ql~~~~i~k~~a~~~------- 214 (442)
T KOG0340|consen 157 LVLDEADRVLAGCFPDILEGIEECLPK---------------PRQTLLFSATITDTIKQLFGCPITKSIAFEL------- 214 (442)
T ss_pred EEecchhhhhccchhhHHhhhhccCCC---------------ccceEEEEeehhhHHHHhhcCCcccccceEE-------
Confidence 999999999999999999999998886 7899999999998877666544433211111
Q ss_pred CccccccCCcccchhhhccCCCccccccccccccccceeeeEEEecCCchHHHHHHHHHhhhccccCceEEEEeecchhh
Q 010357 253 DKSHVRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAV 332 (512)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~lvf~~~~~~~ 332 (512)
........++.+.+.|+.++...|-..++..+...-+. +++.++||+++..+|
T Consensus 215 --------------------------e~~~~vstvetL~q~yI~~~~~vkdaYLv~~Lr~~~~~-~~~simIFvnttr~c 267 (442)
T KOG0340|consen 215 --------------------------EVIDGVSTVETLYQGYILVSIDVKDAYLVHLLRDFENK-ENGSIMIFVNTTREC 267 (442)
T ss_pred --------------------------eccCCCCchhhhhhheeecchhhhHHHHHHHHhhhhhc-cCceEEEEeehhHHH
Confidence 11112346778889999999999999999999887543 678999999999999
Q ss_pred hhHHHhhhhhcCCCCCCChhHHHhhhhccceeeecCCCCHHHHHHHHHhhhcCCCcEEEeecccccCCCCCCCcEEEEeC
Q 010357 333 DFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYD 412 (512)
Q Consensus 333 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~l~g~~~~~~r~~~~~~f~~~~~~vLvaT~~~~~Gldip~~~~VI~~~ 412 (512)
+.++..|+.. ++.+..+||.|++.+|-..+.+|+++..++|||||++++|+|+|.+++|||++
T Consensus 268 Q~l~~~l~~l-----------------e~r~~~lHs~m~Q~eR~~aLsrFrs~~~~iliaTDVAsRGLDIP~V~LVvN~d 330 (442)
T KOG0340|consen 268 QLLSMTLKNL-----------------EVRVVSLHSQMPQKERLAALSRFRSNAARILIATDVASRGLDIPTVELVVNHD 330 (442)
T ss_pred HHHHHHHhhh-----------------ceeeeehhhcchHHHHHHHHHHHhhcCccEEEEechhhcCCCCCceeEEEecC
Confidence 9999999998 88999999999999999999999999999999999999999999999999999
Q ss_pred CCCChhHHHHhhhhcccCCCCccEEEecCccchhHHHHHHHc-CCCCCccCh
Q 010357 413 SAGEATEYVHRVGRTARLGERGDSLLFLQPVEMDYLQDLEKH-GVSLTEYPL 463 (512)
Q Consensus 413 ~p~s~~~~~Q~~GRagR~g~~g~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~ 463 (512)
.|..+.+|+||+||++|+|+.|.++.|++..|.+.+..++.. |..+.|++.
T Consensus 331 iPr~P~~yiHRvGRtARAGR~G~aiSivt~rDv~l~~aiE~~igkKl~e~~~ 382 (442)
T KOG0340|consen 331 IPRDPKDYIHRVGRTARAGRKGMAISIVTQRDVELLQAIEEEIGKKLTEYNK 382 (442)
T ss_pred CCCCHHHHHHhhcchhcccCCcceEEEechhhHHHHHHHHHHHhcccccccc
Confidence 999999999999999999999999999999999999998885 666777654
No 16
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=100.00 E-value=1.8e-58 Score=468.91 Aligned_cols=365 Identities=32% Similarity=0.525 Sum_probs=318.7
Q ss_pred CCcccCCCCHHHHHHHHHhcCCCCCcHHHHHHHHHhhcCCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEE
Q 010357 18 CSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFAL 97 (512)
Q Consensus 18 ~~~~~~~l~~~~~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~l 97 (512)
.+|++++|++++++++ +.+||.+|+|+|.++++.+++++++|++||||||||++|++|+++.+... ..++++|
T Consensus 6 ~~f~~l~L~~~ll~al-~~~G~~~ptpiQ~~ai~~ll~g~dvl~~ApTGsGKT~af~lpll~~l~~~------~~~~~~L 78 (629)
T PRK11634 6 TTFADLGLKAPILEAL-NDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNLDPE------LKAPQIL 78 (629)
T ss_pred CCHhhcCCCHHHHHHH-HHCCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHHHhhhc------cCCCeEE
Confidence 4699999999999999 46799999999999999999999999999999999999999999887542 1256799
Q ss_pred EEcCcHHHHHHHHHHHHHHHhhcCCcceEEEeCCCchHHHHHHHcCCCCEEEeCChHHHHHHhhcCCCcCCceeEEEEcc
Q 010357 98 VLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDE 177 (512)
Q Consensus 98 il~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lV~DE 177 (512)
|++||++|+.|+++.+..+...+....+..+++|.....+...+..+++|+|+||+++++++.. ..+.++++++||+||
T Consensus 79 IL~PTreLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~l~~~~~IVVgTPgrl~d~l~r-~~l~l~~l~~lVlDE 157 (629)
T PRK11634 79 VLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKR-GTLDLSKLSGLVLDE 157 (629)
T ss_pred EEeCcHHHHHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHHHhcCCCCEEEECHHHHHHHHHc-CCcchhhceEEEecc
Confidence 9999999999999999998876655667788899888888888888899999999999999876 566778999999999
Q ss_pred hhHHHhcCchHHHHHHHHHhccCCCCCCCCCCcccccceeEEEEEEecchhhHHHHHhhcCCCeEEccCCCcCCCCcccc
Q 010357 178 ADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLPEDKSHV 257 (512)
Q Consensus 178 ah~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (512)
||++++.+|...+..++..++. ..|++++|||+++.+..+...++.++..+.+....
T Consensus 158 Ad~ml~~gf~~di~~Il~~lp~---------------~~q~llfSAT~p~~i~~i~~~~l~~~~~i~i~~~~-------- 214 (629)
T PRK11634 158 ADEMLRMGFIEDVETIMAQIPE---------------GHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSV-------- 214 (629)
T ss_pred HHHHhhcccHHHHHHHHHhCCC---------------CCeEEEEEccCChhHHHHHHHHcCCCeEEEccCcc--------
Confidence 9999999999999999998876 78999999999999988888888877766443321
Q ss_pred ccCCcccchhhhccCCCccccccccccccccceeeeEEEecCCchHHHHHHHHHhhhccccCceEEEEeecchhhhhHHH
Q 010357 258 RFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYS 337 (512)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~ 337 (512)
.....+.+.+..+....|...+..++.. ....++||||+++..++.+++
T Consensus 215 ---------------------------~~~~~i~q~~~~v~~~~k~~~L~~~L~~----~~~~~~IVF~~tk~~a~~l~~ 263 (629)
T PRK11634 215 ---------------------------TTRPDISQSYWTVWGMRKNEALVRFLEA----EDFDAAIIFVRTKNATLEVAE 263 (629)
T ss_pred ---------------------------ccCCceEEEEEEechhhHHHHHHHHHHh----cCCCCEEEEeccHHHHHHHHH
Confidence 1123345666666666777777777754 345789999999999999999
Q ss_pred hhhhhcCCCCCCChhHHHhhhhccceeeecCCCCHHHHHHHHHhhhcCCCcEEEeecccccCCCCCCCcEEEEeCCCCCh
Q 010357 338 LLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEA 417 (512)
Q Consensus 338 ~l~~~~~~~~~~~~~~~~~~~~~~~v~~l~g~~~~~~r~~~~~~f~~~~~~vLvaT~~~~~Gldip~~~~VI~~~~p~s~ 417 (512)
.|... ++.+..+||+|++.+|..+++.|++|+.+|||||+++++|||+|++++||+|+.|.+.
T Consensus 264 ~L~~~-----------------g~~~~~lhgd~~q~~R~~il~~Fr~G~~~ILVATdv~arGIDip~V~~VI~~d~P~~~ 326 (629)
T PRK11634 264 ALERN-----------------GYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDS 326 (629)
T ss_pred HHHhC-----------------CCCEEEeeCCCCHHHHHHHHHHHhCCCCCEEEEcchHhcCCCcccCCEEEEeCCCCCH
Confidence 99887 7889999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHhhhhcccCCCCccEEEecCccchhHHHHHHHc-CCCCCcc
Q 010357 418 TEYVHRVGRTARLGERGDSLLFLQPVEMDYLQDLEKH-GVSLTEY 461 (512)
Q Consensus 418 ~~~~Q~~GRagR~g~~g~~~~~~~~~~~~~~~~l~~~-~~~~~~~ 461 (512)
.+|+||+||+||.|+.|.+++|+.+.+...++.+++. +..++++
T Consensus 327 e~yvqRiGRtGRaGr~G~ai~~v~~~e~~~l~~ie~~~~~~i~~~ 371 (629)
T PRK11634 327 ESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLTIPEV 371 (629)
T ss_pred HHHHHHhccccCCCCcceEEEEechHHHHHHHHHHHHhCCCccee
Confidence 9999999999999999999999999988888888774 5555444
No 17
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=100.00 E-value=2.1e-58 Score=464.12 Aligned_cols=367 Identities=31% Similarity=0.515 Sum_probs=308.7
Q ss_pred CccCCcccCCCCHHHHHHHHHhcCCCCCcHHHHHHHHHhhcCCCEEEEccCCChHhHHHHHHHHHHHhhcCC-CCCCCCC
Q 010357 15 FASCSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSP-RIDRSSG 93 (512)
Q Consensus 15 ~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~-~~~~~~~ 93 (512)
.+-.+|+++++++.+.+.+. .+||..|+|+|.++++.+++|+|+++++|||||||++|++|++..+..... ......+
T Consensus 118 ~pi~~f~~~~l~~~l~~~L~-~~g~~~ptpiQ~~aip~il~g~dviv~ApTGSGKTlayllPil~~l~~~~~~~~~~~~~ 196 (518)
T PLN00206 118 PPILSFSSCGLPPKLLLNLE-TAGYEFPTPIQMQAIPAALSGRSLLVSADTGSGKTASFLVPIISRCCTIRSGHPSEQRN 196 (518)
T ss_pred chhcCHHhCCCCHHHHHHHH-HcCCCCCCHHHHHHHHHHhcCCCEEEEecCCCCccHHHHHHHHHHHHhhccccccccCC
Confidence 45568999999999999995 569999999999999999999999999999999999999999988764321 1112357
Q ss_pred ceEEEEcCcHHHHHHHHHHHHHHHhhcCCcceEEEeCCCchHHHHHHHcCCCCEEEeCChHHHHHHhhcCCCcCCceeEE
Q 010357 94 TFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWI 173 (512)
Q Consensus 94 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~l 173 (512)
.++||++||++|+.|+.+.++.+....+ .....+.||.........+..+++|+|+||++|.+++.. ....++++++|
T Consensus 197 ~~aLIL~PTreLa~Qi~~~~~~l~~~~~-~~~~~~~gG~~~~~q~~~l~~~~~IiV~TPgrL~~~l~~-~~~~l~~v~~l 274 (518)
T PLN00206 197 PLAMVLTPTRELCVQVEDQAKVLGKGLP-FKTALVVGGDAMPQQLYRIQQGVELIVGTPGRLIDLLSK-HDIELDNVSVL 274 (518)
T ss_pred ceEEEEeCCHHHHHHHHHHHHHHhCCCC-ceEEEEECCcchHHHHHHhcCCCCEEEECHHHHHHHHHc-CCccchheeEE
Confidence 8899999999999999999998876654 445667788888888888888899999999999999876 46677899999
Q ss_pred EEcchhHHHhcCchHHHHHHHHHhccCCCCCCCCCCcccccceeEEEEEEecchhhHHHHHhhcCCCeEEccCCCcCCCC
Q 010357 174 IFDEADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLPED 253 (512)
Q Consensus 174 V~DEah~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (512)
|+||||++.+.+|...+..++..++ .+|++++|||+++.+..+......++..+......
T Consensus 275 ViDEad~ml~~gf~~~i~~i~~~l~----------------~~q~l~~SATl~~~v~~l~~~~~~~~~~i~~~~~~---- 334 (518)
T PLN00206 275 VLDEVDCMLERGFRDQVMQIFQALS----------------QPQVLLFSATVSPEVEKFASSLAKDIILISIGNPN---- 334 (518)
T ss_pred EeecHHHHhhcchHHHHHHHHHhCC----------------CCcEEEEEeeCCHHHHHHHHHhCCCCEEEEeCCCC----
Confidence 9999999999999999999988774 67999999999999998888888887776554332
Q ss_pred ccccccCCcccchhhhccCCCccccccccccccccceeeeEEEecCCchHHHHHHHHHhhhccccCceEEEEeecchhhh
Q 010357 254 KSHVRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVD 333 (512)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~lvf~~~~~~~~ 333 (512)
.....+.+.+..+....+...+.+++.... ....++||||+++..++
T Consensus 335 -------------------------------~~~~~v~q~~~~~~~~~k~~~l~~~l~~~~--~~~~~~iVFv~s~~~a~ 381 (518)
T PLN00206 335 -------------------------------RPNKAVKQLAIWVETKQKKQKLFDILKSKQ--HFKPPAVVFVSSRLGAD 381 (518)
T ss_pred -------------------------------CCCcceeEEEEeccchhHHHHHHHHHHhhc--ccCCCEEEEcCCchhHH
Confidence 112233445555666667777777776532 22358999999999999
Q ss_pred hHHHhhhhhcCCCCCCChhHHHhhhhccceeeecCCCCHHHHHHHHHhhhcCCCcEEEeecccccCCCCCCCcEEEEeCC
Q 010357 334 FHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDS 413 (512)
Q Consensus 334 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~l~g~~~~~~r~~~~~~f~~~~~~vLvaT~~~~~Gldip~~~~VI~~~~ 413 (512)
.+++.|.... ++.+..+||+|+..+|..+++.|++|+.+|||||+++++|+|+|++++||+|++
T Consensus 382 ~l~~~L~~~~----------------g~~~~~~Hg~~~~~eR~~il~~Fr~G~~~ILVaTdvl~rGiDip~v~~VI~~d~ 445 (518)
T PLN00206 382 LLANAITVVT----------------GLKALSIHGEKSMKERREVMKSFLVGEVPVIVATGVLGRGVDLLRVRQVIIFDM 445 (518)
T ss_pred HHHHHHhhcc----------------CcceEEeeCCCCHHHHHHHHHHHHCCCCCEEEEecHhhccCCcccCCEEEEeCC
Confidence 9999986531 678899999999999999999999999999999999999999999999999999
Q ss_pred CCChhHHHHhhhhcccCCCCccEEEecCccchhHHHHHHH
Q 010357 414 AGEATEYVHRVGRTARLGERGDSLLFLQPVEMDYLQDLEK 453 (512)
Q Consensus 414 p~s~~~~~Q~~GRagR~g~~g~~~~~~~~~~~~~~~~l~~ 453 (512)
|.+..+|+||+||+||.|..|.+++|++.++...+..+.+
T Consensus 446 P~s~~~yihRiGRaGR~g~~G~ai~f~~~~~~~~~~~l~~ 485 (518)
T PLN00206 446 PNTIKEYIHQIGRASRMGEKGTAIVFVNEEDRNLFPELVA 485 (518)
T ss_pred CCCHHHHHHhccccccCCCCeEEEEEEchhHHHHHHHHHH
Confidence 9999999999999999999999999999988665555544
No 18
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=100.00 E-value=1.6e-58 Score=426.79 Aligned_cols=380 Identities=31% Similarity=0.521 Sum_probs=335.8
Q ss_pred CccCCcccCCCCHHHHHHHHHhcCCCCCcHHHHHHHHHhhcCCCEEEEccCCChHhHHHHHHHHHHHhhcCCC---CCCC
Q 010357 15 FASCSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPR---IDRS 91 (512)
Q Consensus 15 ~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~---~~~~ 91 (512)
.+..+|++.|++.++++.+ +..||..|+|+|+.++|..++++|+|..+.||||||.+|++|++..+.+..+. ....
T Consensus 242 nplrnwEE~~~P~e~l~~I-~~~~y~eptpIqR~aipl~lQ~rD~igvaETgsGktaaf~ipLl~~IsslP~~~~~en~~ 320 (673)
T KOG0333|consen 242 NPLRNWEESGFPLELLSVI-KKPGYKEPTPIQRQAIPLGLQNRDPIGVAETGSGKTAAFLIPLLIWISSLPPMARLENNI 320 (673)
T ss_pred ccccChhhcCCCHHHHHHH-HhcCCCCCchHHHhhccchhccCCeeeEEeccCCccccchhhHHHHHHcCCCcchhhhcc
Confidence 3456999999999999988 56799999999999999999999999999999999999999999998887643 2446
Q ss_pred CCceEEEEcCcHHHHHHHHHHHHHHHhhcCCcceEEEeCCCchHHHHHHHcCCCCEEEeCChHHHHHHhhcCCCcCCcee
Q 010357 92 SGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLR 171 (512)
Q Consensus 92 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~ 171 (512)
.|+.+++++|||+|++|+.++-.++++.++ +....+.||.+.+.+--.+..+++|+|+||++|.+.+.+ ..+.++...
T Consensus 321 ~gpyaiilaptReLaqqIeeEt~kf~~~lg-~r~vsvigg~s~EEq~fqls~gceiviatPgrLid~Len-r~lvl~qct 398 (673)
T KOG0333|consen 321 EGPYAIILAPTRELAQQIEEETNKFGKPLG-IRTVSVIGGLSFEEQGFQLSMGCEIVIATPGRLIDSLEN-RYLVLNQCT 398 (673)
T ss_pred cCceeeeechHHHHHHHHHHHHHHhccccc-ceEEEEecccchhhhhhhhhccceeeecCchHHHHHHHH-HHHHhccCc
Confidence 789999999999999999999999999888 566678889888888777888999999999999999987 667778999
Q ss_pred EEEEcchhHHHhcCchHHHHHHHHHhccCCCCCCCC----------CCcccccceeEEEEEEecchhhHHHHHhhcCCCe
Q 010357 172 WIIFDEADRILELGFGKEIEEILDILGSRNIGSIGE----------GNEVSNVKRQNLLLSATLNEKVNHLAKISLETPV 241 (512)
Q Consensus 172 ~lV~DEah~l~~~~~~~~~~~i~~~~~~~~~~~~~~----------~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~ 241 (512)
+||+|||+++.+.+|...+..++...|..+....+. .......-+|.+.+|||+++.+..++..++..|.
T Consensus 399 yvvldeadrmiDmgfE~dv~~iL~~mPssn~k~~tde~~~~~~~~~~~~~~k~yrqT~mftatm~p~verlar~ylr~pv 478 (673)
T KOG0333|consen 399 YVVLDEADRMIDMGFEPDVQKILEQMPSSNAKPDTDEKEGEERVRKNFSSSKKYRQTVMFTATMPPAVERLARSYLRRPV 478 (673)
T ss_pred eEeccchhhhhcccccHHHHHHHHhCCccccCCCccchhhHHHHHhhcccccceeEEEEEecCCChHHHHHHHHHhhCCe
Confidence 999999999999999999999999999866543221 1111223489999999999999999999999999
Q ss_pred EEccCCCcCCCCccccccCCcccchhhhccCCCccccccccccccccceeeeEEEecCCchHHHHHHHHHhhhccccCce
Q 010357 242 LIGLDEKKLPEDKSHVRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQK 321 (512)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~ 321 (512)
.+.+.... .....+.|.++.+...+|...|.++|... ...+
T Consensus 479 ~vtig~~g-----------------------------------k~~~rveQ~v~m~~ed~k~kkL~eil~~~----~~pp 519 (673)
T KOG0333|consen 479 VVTIGSAG-----------------------------------KPTPRVEQKVEMVSEDEKRKKLIEILESN----FDPP 519 (673)
T ss_pred EEEeccCC-----------------------------------CCccchheEEEEecchHHHHHHHHHHHhC----CCCC
Confidence 88777653 23456778888899999999999999865 3579
Q ss_pred EEEEeecchhhhhHHHhhhhhcCCCCCCChhHHHhhhhccceeeecCCCCHHHHHHHHHhhhcCCCcEEEeecccccCCC
Q 010357 322 LVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLD 401 (512)
Q Consensus 322 ~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~l~g~~~~~~r~~~~~~f~~~~~~vLvaT~~~~~Gld 401 (512)
+|||+|+++.|+.+++.|... ++.+..|||+-++++|+..+..|++|..+|||||+++++|||
T Consensus 520 iIIFvN~kk~~d~lAk~LeK~-----------------g~~~~tlHg~k~qeQRe~aL~~fr~~t~dIlVaTDvAgRGID 582 (673)
T KOG0333|consen 520 IIIFVNTKKGADALAKILEKA-----------------GYKVTTLHGGKSQEQRENALADFREGTGDILVATDVAGRGID 582 (673)
T ss_pred EEEEEechhhHHHHHHHHhhc-----------------cceEEEeeCCccHHHHHHHHHHHHhcCCCEEEEecccccCCC
Confidence 999999999999999999998 889999999999999999999999999999999999999999
Q ss_pred CCCCcEEEEeCCCCChhHHHHhhhhcccCCCCccEEEecCccchhHHHHHHH
Q 010357 402 FPKVKCIIQYDSAGEATEYVHRVGRTARLGERGDSLLFLQPVEMDYLQDLEK 453 (512)
Q Consensus 402 ip~~~~VI~~~~p~s~~~~~Q~~GRagR~g~~g~~~~~~~~~~~~~~~~l~~ 453 (512)
+|+|++||+|+++.++.+|+||+||+||+|+.|.++.|+++.|...+..|.+
T Consensus 583 IpnVSlVinydmaksieDYtHRIGRTgRAGk~GtaiSflt~~dt~v~ydLkq 634 (673)
T KOG0333|consen 583 IPNVSLVINYDMAKSIEDYTHRIGRTGRAGKSGTAISFLTPADTAVFYDLKQ 634 (673)
T ss_pred CCccceeeecchhhhHHHHHHHhccccccccCceeEEEeccchhHHHHHHHH
Confidence 9999999999999999999999999999999999999999999665555544
No 19
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=6e-57 Score=451.90 Aligned_cols=383 Identities=30% Similarity=0.456 Sum_probs=315.9
Q ss_pred cCCcccCCCCHHHHHHHHHhcCCCCCcHHHHHHHHHhhcCCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCC-CCCce
Q 010357 17 SCSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDR-SSGTF 95 (512)
Q Consensus 17 ~~~~~~~~l~~~~~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~-~~~~~ 95 (512)
...|..+++++.+.+.|. .+||..|+++|.++++.+++|+|+++++|||||||++|++|+++.+......... ....+
T Consensus 86 ~~~f~~~~l~~~l~~~l~-~~g~~~~~~iQ~~ai~~~~~G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~~~~~~~~~ 164 (475)
T PRK01297 86 KTRFHDFNLAPELMHAIH-DLGFPYCTPIQAQVLGYTLAGHDAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGEPR 164 (475)
T ss_pred CCCHhHCCCCHHHHHHHH-HCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhcCcccccccCCce
Confidence 457999999999999996 5799999999999999999999999999999999999999999998764432111 12578
Q ss_pred EEEEcCcHHHHHHHHHHHHHHHhhcCCcceEEEeCCCchHHHHHHHc-CCCCEEEeCChHHHHHHhhcCCCcCCceeEEE
Q 010357 96 ALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLR-KGISILVATPGRLLDHLKHTSSFLHTNLRWII 174 (512)
Q Consensus 96 ~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lV 174 (512)
+||++||++|+.|+.+.+..+....+ ..+..+.||.+.......+. ..++|+|+||++|+.++.. ....++++++||
T Consensus 165 aLil~PtreLa~Q~~~~~~~l~~~~~-~~v~~~~gg~~~~~~~~~~~~~~~~Iiv~TP~~Ll~~~~~-~~~~l~~l~~lV 242 (475)
T PRK01297 165 ALIIAPTRELVVQIAKDAAALTKYTG-LNVMTFVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQR-GEVHLDMVEVMV 242 (475)
T ss_pred EEEEeCcHHHHHHHHHHHHHhhccCC-CEEEEEEccCChHHHHHHHhCCCCCEEEECHHHHHHHHHc-CCcccccCceEE
Confidence 99999999999999999999877655 44556677777666666554 4589999999999987765 455678999999
Q ss_pred EcchhHHHhcCchHHHHHHHHHhccCCCCCCCCCCcccccceeEEEEEEecchhhHHHHHhhcCCCeEEccCCCcCCCCc
Q 010357 175 FDEADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLPEDK 254 (512)
Q Consensus 175 ~DEah~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (512)
|||+|++.+.+|...+..++..++... ..|++++|||++.....+...+..++..+.+.....
T Consensus 243 iDEah~l~~~~~~~~l~~i~~~~~~~~-------------~~q~i~~SAT~~~~~~~~~~~~~~~~~~v~~~~~~~---- 305 (475)
T PRK01297 243 LDEADRMLDMGFIPQVRQIIRQTPRKE-------------ERQTLLFSATFTDDVMNLAKQWTTDPAIVEIEPENV---- 305 (475)
T ss_pred echHHHHHhcccHHHHHHHHHhCCCCC-------------CceEEEEEeecCHHHHHHHHHhccCCEEEEeccCcC----
Confidence 999999999999999999988775421 569999999999888888888877777655433221
Q ss_pred cccccCCcccchhhhccCCCccccccccccccccceeeeEEEecCCchHHHHHHHHHhhhccccCceEEEEeecchhhhh
Q 010357 255 SHVRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDF 334 (512)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~lvf~~~~~~~~~ 334 (512)
....+.+.+..+...++...+..++.. ....++||||++++.++.
T Consensus 306 -------------------------------~~~~~~~~~~~~~~~~k~~~l~~ll~~----~~~~~~IVF~~s~~~~~~ 350 (475)
T PRK01297 306 -------------------------------ASDTVEQHVYAVAGSDKYKLLYNLVTQ----NPWERVMVFANRKDEVRR 350 (475)
T ss_pred -------------------------------CCCcccEEEEEecchhHHHHHHHHHHh----cCCCeEEEEeCCHHHHHH
Confidence 112233445555566676666666653 345799999999999999
Q ss_pred HHHhhhhhcCCCCCCChhHHHhhhhccceeeecCCCCHHHHHHHHHhhhcCCCcEEEeecccccCCCCCCCcEEEEeCCC
Q 010357 335 HYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSA 414 (512)
Q Consensus 335 l~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~l~g~~~~~~r~~~~~~f~~~~~~vLvaT~~~~~Gldip~~~~VI~~~~p 414 (512)
+++.|... ++.+..+||+++..+|..+++.|++|++++||||+++++|+|+|++++||+++.|
T Consensus 351 l~~~L~~~-----------------~~~~~~~~g~~~~~~R~~~~~~Fr~G~~~vLvaT~~l~~GIDi~~v~~VI~~~~P 413 (475)
T PRK01297 351 IEERLVKD-----------------GINAAQLSGDVPQHKRIKTLEGFREGKIRVLVATDVAGRGIHIDGISHVINFTLP 413 (475)
T ss_pred HHHHHHHc-----------------CCCEEEEECCCCHHHHHHHHHHHhCCCCcEEEEccccccCCcccCCCEEEEeCCC
Confidence 99999876 7789999999999999999999999999999999999999999999999999999
Q ss_pred CChhHHHHhhhhcccCCCCccEEEecCccchhHHHHHHHc-CCCC-CccChhhHhhhcc
Q 010357 415 GEATEYVHRVGRTARLGERGDSLLFLQPVEMDYLQDLEKH-GVSL-TEYPLLKVLDSFP 471 (512)
Q Consensus 415 ~s~~~~~Q~~GRagR~g~~g~~~~~~~~~~~~~~~~l~~~-~~~~-~~~~~~~~l~~~~ 471 (512)
.+..+|+||+||+||.|+.|.+++|++.+|..++..+++. +.++ .+++..++++.++
T Consensus 414 ~s~~~y~Qr~GRaGR~g~~g~~i~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 472 (475)
T PRK01297 414 EDPDDYVHRIGRTGRAGASGVSISFAGEDDAFQLPEIEELLGRKISCEMPPAELLKPVP 472 (475)
T ss_pred CCHHHHHHhhCccCCCCCCceEEEEecHHHHHHHHHHHHHhCCCCcccCCcHHHhhhhh
Confidence 9999999999999999999999999999988888888774 5554 4556666665443
No 20
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=100.00 E-value=1.6e-56 Score=445.43 Aligned_cols=360 Identities=34% Similarity=0.527 Sum_probs=305.1
Q ss_pred CCcccCCCCHHHHHHHHHhcCCCCCcHHHHHHHHHhhcCCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEE
Q 010357 18 CSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFAL 97 (512)
Q Consensus 18 ~~~~~~~l~~~~~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~l 97 (512)
.+|+++++++.+.+.+. .+||.+|+++|.++++.+++|+++++++|||+|||++|++|+++.+...... ...+.++|
T Consensus 1 ~~f~~l~l~~~l~~~l~-~~g~~~p~~iQ~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~~--~~~~~~~l 77 (434)
T PRK11192 1 TTFSELELDESLLEALQ-DKGYTRPTAIQAEAIPPALDGRDVLGSAPTGTGKTAAFLLPALQHLLDFPRR--KSGPPRIL 77 (434)
T ss_pred CCHhhcCCCHHHHHHHH-HCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhhcccc--CCCCceEE
Confidence 37999999999999995 5799999999999999999999999999999999999999999988753221 12356899
Q ss_pred EEcCcHHHHHHHHHHHHHHHhhcCCcceEEEeCCCchHHHHHHHcCCCCEEEeCChHHHHHHhhcCCCcCCceeEEEEcc
Q 010357 98 VLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDE 177 (512)
Q Consensus 98 il~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lV~DE 177 (512)
|++||++|+.|+.+.+..+....+ ..+..+.||.........+..+++|+|+||++|++.+.. ..+.+.++++|||||
T Consensus 78 il~Pt~eLa~Q~~~~~~~l~~~~~-~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~~~~-~~~~~~~v~~lViDE 155 (434)
T PRK11192 78 ILTPTRELAMQVADQARELAKHTH-LDIATITGGVAYMNHAEVFSENQDIVVATPGRLLQYIKE-ENFDCRAVETLILDE 155 (434)
T ss_pred EECCcHHHHHHHHHHHHHHHccCC-cEEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHc-CCcCcccCCEEEEEC
Confidence 999999999999999999987665 566778888888887777888899999999999998876 566678899999999
Q ss_pred hhHHHhcCchHHHHHHHHHhccCCCCCCCCCCcccccceeEEEEEEecch-hhHHHHHhhcCCCeEEccCCCcCCCCccc
Q 010357 178 ADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNE-KVNHLAKISLETPVLIGLDEKKLPEDKSH 256 (512)
Q Consensus 178 ah~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (512)
||++++.+|...+..+....+. ..|++++|||++. .+..+....+.++..+......
T Consensus 156 ah~~l~~~~~~~~~~i~~~~~~---------------~~q~~~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~------- 213 (434)
T PRK11192 156 ADRMLDMGFAQDIETIAAETRW---------------RKQTLLFSATLEGDAVQDFAERLLNDPVEVEAEPSR------- 213 (434)
T ss_pred HHHHhCCCcHHHHHHHHHhCcc---------------ccEEEEEEeecCHHHHHHHHHHHccCCEEEEecCCc-------
Confidence 9999999999999999887765 6799999999975 4777777777777665443321
Q ss_pred cccCCcccchhhhccCCCccccccccccccccceeeeEEEecC-CchHHHHHHHHHhhhccccCceEEEEeecchhhhhH
Q 010357 257 VRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPC-GSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFH 335 (512)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~k~~~l~~~l~~~~~~~~~~~~lvf~~~~~~~~~l 335 (512)
.....+.+.+..... ..+...+..++. .....++||||+++..++.+
T Consensus 214 ----------------------------~~~~~i~~~~~~~~~~~~k~~~l~~l~~----~~~~~~~lVF~~s~~~~~~l 261 (434)
T PRK11192 214 ----------------------------RERKKIHQWYYRADDLEHKTALLCHLLK----QPEVTRSIVFVRTRERVHEL 261 (434)
T ss_pred ----------------------------ccccCceEEEEEeCCHHHHHHHHHHHHh----cCCCCeEEEEeCChHHHHHH
Confidence 112233344444432 345555555443 33567999999999999999
Q ss_pred HHhhhhhcCCCCCCChhHHHhhhhccceeeecCCCCHHHHHHHHHhhhcCCCcEEEeecccccCCCCCCCcEEEEeCCCC
Q 010357 336 YSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAG 415 (512)
Q Consensus 336 ~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~l~g~~~~~~r~~~~~~f~~~~~~vLvaT~~~~~Gldip~~~~VI~~~~p~ 415 (512)
+..|... ++.+..+||+|+..+|..+++.|++|+.+|||||+++++|+|+|++++||+|+.|.
T Consensus 262 ~~~L~~~-----------------~~~~~~l~g~~~~~~R~~~l~~f~~G~~~vLVaTd~~~~GiDip~v~~VI~~d~p~ 324 (434)
T PRK11192 262 AGWLRKA-----------------GINCCYLEGEMVQAKRNEAIKRLTDGRVNVLVATDVAARGIDIDDVSHVINFDMPR 324 (434)
T ss_pred HHHHHhC-----------------CCCEEEecCCCCHHHHHHHHHHHhCCCCcEEEEccccccCccCCCCCEEEEECCCC
Confidence 9999886 78899999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHhhhhcccCCCCccEEEecCccchhHHHHHHH
Q 010357 416 EATEYVHRVGRTARLGERGDSLLFLQPVEMDYLQDLEK 453 (512)
Q Consensus 416 s~~~~~Q~~GRagR~g~~g~~~~~~~~~~~~~~~~l~~ 453 (512)
+...|+||+||+||.|..|.++++++..|...+..+++
T Consensus 325 s~~~yiqr~GR~gR~g~~g~ai~l~~~~d~~~~~~i~~ 362 (434)
T PRK11192 325 SADTYLHRIGRTGRAGRKGTAISLVEAHDHLLLGKIER 362 (434)
T ss_pred CHHHHhhcccccccCCCCceEEEEecHHHHHHHHHHHH
Confidence 99999999999999999999999999999888888775
No 21
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=6.5e-59 Score=403.98 Aligned_cols=367 Identities=29% Similarity=0.482 Sum_probs=334.6
Q ss_pred CccCCcccCCCCHHHHHHHHHhcCCCCCcHHHHHHHHHhhcCCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCc
Q 010357 15 FASCSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGT 94 (512)
Q Consensus 15 ~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~ 94 (512)
-.++.|+++.|.++++..+.+. ||+.|+|+|.+++|.++.|++++.-|..|+|||-+|.+|+++.+.... ..-
T Consensus 82 TkG~efEd~~Lkr~LLmgIfe~-G~ekPSPiQeesIPiaLtGrdiLaRaKNGTGKT~a~~IP~Lekid~~~------~~I 154 (459)
T KOG0326|consen 82 TKGNEFEDYCLKRELLMGIFEK-GFEKPSPIQEESIPIALTGRDILARAKNGTGKTAAYCIPVLEKIDPKK------NVI 154 (459)
T ss_pred ccCccHHHhhhhHHHHHHHHHh-ccCCCCCccccccceeecchhhhhhccCCCCCccceechhhhhcCccc------cce
Confidence 3567899999999999999875 999999999999999999999999999999999999999999876532 355
Q ss_pred eEEEEcCcHHHHHHHHHHHHHHHhhcCCcceEEEeCCCchHHHHHHHcCCCCEEEeCChHHHHHHhhcCCCcCCceeEEE
Q 010357 95 FALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWII 174 (512)
Q Consensus 95 ~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lV 174 (512)
++++++|||+||.|....++.+++..+ ..+....||.+..+..-++..+.+++|+||++++++..+ +.-.+++..++|
T Consensus 155 Q~~ilVPtrelALQtSqvc~~lskh~~-i~vmvttGGT~lrDDI~Rl~~~VH~~vgTPGRIlDL~~K-gVa~ls~c~~lV 232 (459)
T KOG0326|consen 155 QAIILVPTRELALQTSQVCKELSKHLG-IKVMVTTGGTSLRDDIMRLNQTVHLVVGTPGRILDLAKK-GVADLSDCVILV 232 (459)
T ss_pred eEEEEeecchhhHHHHHHHHHHhcccC-eEEEEecCCcccccceeeecCceEEEEcCChhHHHHHhc-ccccchhceEEE
Confidence 699999999999999999999999887 777889999999998888888999999999999998876 666788999999
Q ss_pred EcchhHHHhcCchHHHHHHHHHhccCCCCCCCCCCcccccceeEEEEEEecchhhHHHHHhhcCCCeEEccCCCcCCCCc
Q 010357 175 FDEADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLPEDK 254 (512)
Q Consensus 175 ~DEah~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (512)
+||||.+++..|...++.++..+|+ .+|++++|||.|-.+..|...++.+|..+..-.+-
T Consensus 233 ~DEADKlLs~~F~~~~e~li~~lP~---------------~rQillySATFP~tVk~Fm~~~l~kPy~INLM~eL----- 292 (459)
T KOG0326|consen 233 MDEADKLLSVDFQPIVEKLISFLPK---------------ERQILLYSATFPLTVKGFMDRHLKKPYEINLMEEL----- 292 (459)
T ss_pred echhhhhhchhhhhHHHHHHHhCCc---------------cceeeEEecccchhHHHHHHHhccCcceeehhhhh-----
Confidence 9999999999999999999999998 99999999999999999999999999988665542
Q ss_pred cccccCCcccchhhhccCCCccccccccccccccceeeeEEEecCCchHHHHHHHHHhhhccccCceEEEEeecchhhhh
Q 010357 255 SHVRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDF 334 (512)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~lvf~~~~~~~~~ 334 (512)
....+.++|..+.+..|+..+..+..++ .-...|||||+...+|.
T Consensus 293 -------------------------------tl~GvtQyYafV~e~qKvhCLntLfskL----qINQsIIFCNS~~rVEL 337 (459)
T KOG0326|consen 293 -------------------------------TLKGVTQYYAFVEERQKVHCLNTLFSKL----QINQSIIFCNSTNRVEL 337 (459)
T ss_pred -------------------------------hhcchhhheeeechhhhhhhHHHHHHHh----cccceEEEeccchHhHH
Confidence 3566788999999999998888777654 34689999999999999
Q ss_pred HHHhhhhhcCCCCCCChhHHHhhhhccceeeecCCCCHHHHHHHHHhhhcCCCcEEEeecccccCCCCCCCcEEEEeCCC
Q 010357 335 HYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSA 414 (512)
Q Consensus 335 l~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~l~g~~~~~~r~~~~~~f~~~~~~vLvaT~~~~~Gldip~~~~VI~~~~p 414 (512)
++..+.+. |+.++++|+.|.+++|..++..|++|.++.||||+.+.+|+|++++++||+||.|
T Consensus 338 LAkKITel-----------------GyscyyiHakM~Q~hRNrVFHdFr~G~crnLVctDL~TRGIDiqavNvVINFDfp 400 (459)
T KOG0326|consen 338 LAKKITEL-----------------GYSCYYIHAKMAQEHRNRVFHDFRNGKCRNLVCTDLFTRGIDIQAVNVVINFDFP 400 (459)
T ss_pred HHHHHHhc-----------------cchhhHHHHHHHHhhhhhhhhhhhccccceeeehhhhhcccccceeeEEEecCCC
Confidence 99999988 8999999999999999999999999999999999999999999999999999999
Q ss_pred CChhHHHHhhhhcccCCCCccEEEecCccchhHHHHHHHc-CCCCCccC
Q 010357 415 GEATEYVHRVGRTARLGERGDSLLFLQPVEMDYLQDLEKH-GVSLTEYP 462 (512)
Q Consensus 415 ~s~~~~~Q~~GRagR~g~~g~~~~~~~~~~~~~~~~l~~~-~~~~~~~~ 462 (512)
.++++|+||+||+||.|..|.++.+++-+|...+..+++. |-++..+|
T Consensus 401 k~aEtYLHRIGRsGRFGhlGlAInLityedrf~L~~IE~eLGtEI~pip 449 (459)
T KOG0326|consen 401 KNAETYLHRIGRSGRFGHLGLAINLITYEDRFNLYRIEQELGTEIKPIP 449 (459)
T ss_pred CCHHHHHHHccCCccCCCcceEEEEEehhhhhhHHHHHHHhccccccCC
Confidence 9999999999999999999999999999999999888875 66665554
No 22
>PTZ00424 helicase 45; Provisional
Probab=100.00 E-value=7e-55 Score=431.10 Aligned_cols=366 Identities=28% Similarity=0.491 Sum_probs=301.5
Q ss_pred cCCcccCCCCHHHHHHHHHhcCCCCCcHHHHHHHHHhhcCCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceE
Q 010357 17 SCSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFA 96 (512)
Q Consensus 17 ~~~~~~~~l~~~~~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (512)
..+|+++++++.+.+.+. .+||.+|+++|.++++.+++++++++++|||||||++|++|+++.+... ..+.++
T Consensus 27 ~~~~~~l~l~~~~~~~l~-~~~~~~~~~~Q~~ai~~i~~~~d~ii~apTGsGKT~~~~l~~l~~~~~~------~~~~~~ 99 (401)
T PTZ00424 27 VDSFDALKLNEDLLRGIY-SYGFEKPSAIQQRGIKPILDGYDTIGQAQSGTGKTATFVIAALQLIDYD------LNACQA 99 (401)
T ss_pred cCCHhhCCCCHHHHHHHH-HcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhcCC------CCCceE
Confidence 378999999999999995 5799999999999999999999999999999999999999999877431 135679
Q ss_pred EEEcCcHHHHHHHHHHHHHHHhhcCCcceEEEeCCCchHHHHHHHcCCCCEEEeCChHHHHHHhhcCCCcCCceeEEEEc
Q 010357 97 LVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFD 176 (512)
Q Consensus 97 lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lV~D 176 (512)
||++|+++|+.|+.+.+..++...+ .......++.........+..+++|+|+||+++.+.+.. ....++++++||+|
T Consensus 100 lil~Pt~~L~~Q~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~-~~~~l~~i~lvViD 177 (401)
T PTZ00424 100 LILAPTRELAQQIQKVVLALGDYLK-VRCHACVGGTVVRDDINKLKAGVHMVVGTPGRVYDMIDK-RHLRVDDLKLFILD 177 (401)
T ss_pred EEECCCHHHHHHHHHHHHHHhhhcC-ceEEEEECCcCHHHHHHHHcCCCCEEEECcHHHHHHHHh-CCcccccccEEEEe
Confidence 9999999999999999988876544 334556677777777777788899999999999998876 45567899999999
Q ss_pred chhHHHhcCchHHHHHHHHHhccCCCCCCCCCCcccccceeEEEEEEecchhhHHHHHhhcCCCeEEccCCCcCCCCccc
Q 010357 177 EADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLPEDKSH 256 (512)
Q Consensus 177 Eah~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (512)
|||++.+.++...+..++..++. ..|++++|||+++....+...++..+..+.......
T Consensus 178 Eah~~~~~~~~~~~~~i~~~~~~---------------~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~------ 236 (401)
T PTZ00424 178 EADEMLSRGFKGQIYDVFKKLPP---------------DVQVALFSATMPNEILELTTKFMRDPKRILVKKDEL------ 236 (401)
T ss_pred cHHHHHhcchHHHHHHHHhhCCC---------------CcEEEEEEecCCHHHHHHHHHHcCCCEEEEeCCCCc------
Confidence 99999999898888888877765 789999999999888777777776665543322210
Q ss_pred cccCCcccchhhhccCCCccccccccccccccceeeeEEEecC-CchHHHHHHHHHhhhccccCceEEEEeecchhhhhH
Q 010357 257 VRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPC-GSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFH 335 (512)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~k~~~l~~~l~~~~~~~~~~~~lvf~~~~~~~~~l 335 (512)
....+.+.+..... ..+...+...+. .....++||||+++..++.+
T Consensus 237 -----------------------------~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~ivF~~t~~~~~~l 283 (401)
T PTZ00424 237 -----------------------------TLEGIRQFYVAVEKEEWKFDTLCDLYE----TLTITQAIIYCNTRRKVDYL 283 (401)
T ss_pred -----------------------------ccCCceEEEEecChHHHHHHHHHHHHH----hcCCCeEEEEecCcHHHHHH
Confidence 11223333333332 223334444333 33457899999999999999
Q ss_pred HHhhhhhcCCCCCCChhHHHhhhhccceeeecCCCCHHHHHHHHHhhhcCCCcEEEeecccccCCCCCCCcEEEEeCCCC
Q 010357 336 YSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAG 415 (512)
Q Consensus 336 ~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~l~g~~~~~~r~~~~~~f~~~~~~vLvaT~~~~~Gldip~~~~VI~~~~p~ 415 (512)
++.|... +..+..+||+|+..+|..+++.|++|+.+|||||+++++|+|+|++++||+++.|.
T Consensus 284 ~~~l~~~-----------------~~~~~~~h~~~~~~~R~~i~~~f~~g~~~vLvaT~~l~~GiDip~v~~VI~~~~p~ 346 (401)
T PTZ00424 284 TKKMHER-----------------DFTVSCMHGDMDQKDRDLIMREFRSGSTRVLITTDLLARGIDVQQVSLVINYDLPA 346 (401)
T ss_pred HHHHHHC-----------------CCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEcccccCCcCcccCCEEEEECCCC
Confidence 9999876 77899999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHhhhhcccCCCCccEEEecCccchhHHHHHHHc-CCCCCccC
Q 010357 416 EATEYVHRVGRTARLGERGDSLLFLQPVEMDYLQDLEKH-GVSLTEYP 462 (512)
Q Consensus 416 s~~~~~Q~~GRagR~g~~g~~~~~~~~~~~~~~~~l~~~-~~~~~~~~ 462 (512)
+...|+||+||+||.|+.|.|++++++++.+.++.+++. ...+++.+
T Consensus 347 s~~~y~qr~GRagR~g~~G~~i~l~~~~~~~~~~~~e~~~~~~~~~~~ 394 (401)
T PTZ00424 347 SPENYIHRIGRSGRFGRKGVAINFVTPDDIEQLKEIERHYNTQIEEMP 394 (401)
T ss_pred CHHHEeecccccccCCCCceEEEEEcHHHHHHHHHHHHHHCCcccccC
Confidence 999999999999999999999999999999988888774 44444443
No 23
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.6e-56 Score=398.50 Aligned_cols=365 Identities=32% Similarity=0.521 Sum_probs=320.2
Q ss_pred CccCCccc-CCCCHHHHHHHHHhcCCCCCcHHHHHHHHHhhcCCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCC
Q 010357 15 FASCSFSS-LGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSG 93 (512)
Q Consensus 15 ~~~~~~~~-~~l~~~~~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~ 93 (512)
.+.++|+. +...+++...++ +.||..|+|+|.+|+|-+++|.+++.+|+||+|||++|++|.+.++.....+.+...+
T Consensus 216 nP~ctFddAFq~~pevmenIk-K~GFqKPtPIqSQaWPI~LQG~DliGVAQTgtgKtL~~L~pg~ihi~aqp~~~~qr~~ 294 (629)
T KOG0336|consen 216 NPVCTFDDAFQCYPEVMENIK-KTGFQKPTPIQSQAWPILLQGIDLIGVAQTGTGKTLAFLLPGFIHIDAQPKRREQRNG 294 (629)
T ss_pred CCcCcHHHHHhhhHHHHHHHH-hccCCCCCcchhcccceeecCcceEEEEecCCCcCHHHhccceeeeeccchhhhccCC
Confidence 45667876 677899999995 5699999999999999999999999999999999999999999888777666666778
Q ss_pred ceEEEEcCcHHHHHHHHHHHHHHHhhcCCcceEEEeCCCchHHHHHHHcCCCCEEEeCChHHHHHHhhcCCCcCCceeEE
Q 010357 94 TFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWI 173 (512)
Q Consensus 94 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~l 173 (512)
+.+|+++||++|+.|+.-+...... ......+++||.+...+...+.++.+|+++||++|.++... ....+..+.+|
T Consensus 295 p~~lvl~ptreLalqie~e~~kysy--ng~ksvc~ygggnR~eqie~lkrgveiiiatPgrlndL~~~-n~i~l~siTYl 371 (629)
T KOG0336|consen 295 PGVLVLTPTRELALQIEGEVKKYSY--NGLKSVCVYGGGNRNEQIEDLKRGVEIIIATPGRLNDLQMD-NVINLASITYL 371 (629)
T ss_pred CceEEEeccHHHHHHHHhHHhHhhh--cCcceEEEecCCCchhHHHHHhcCceEEeeCCchHhhhhhc-CeeeeeeeEEE
Confidence 9999999999999999888777653 34677889999999999999999999999999999997655 77888899999
Q ss_pred EEcchhHHHhcCchHHHHHHHHHhccCCCCCCCCCCcccccceeEEEEEEecchhhHHHHHhhcCCCeEEccCCCcCCCC
Q 010357 174 IFDEADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLPED 253 (512)
Q Consensus 174 V~DEah~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (512)
|+||||+|++.+|..++..|+-.+++ ++|.++.|||+|+.+..+...++.+|..+.+....+.
T Consensus 372 VlDEADrMLDMgFEpqIrkilldiRP---------------DRqtvmTSATWP~~VrrLa~sY~Kep~~v~vGsLdL~-- 434 (629)
T KOG0336|consen 372 VLDEADRMLDMGFEPQIRKILLDIRP---------------DRQTVMTSATWPEGVRRLAQSYLKEPMIVYVGSLDLV-- 434 (629)
T ss_pred EecchhhhhcccccHHHHHHhhhcCC---------------cceeeeecccCchHHHHHHHHhhhCceEEEeccccee--
Confidence 99999999999999999999988877 9999999999999999999999999998766655321
Q ss_pred ccccccCCcccchhhhccCCCccccccccccccccceeeeEEEecCCchHHHHHHHHHhhhccccCceEEEEeecchhhh
Q 010357 254 KSHVRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVD 333 (512)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~lvf~~~~~~~~ 333 (512)
....+.+.++.....+|+..+..++..+ ..+.++||||+++..+.
T Consensus 435 --------------------------------a~~sVkQ~i~v~~d~~k~~~~~~f~~~m---s~ndKvIiFv~~K~~AD 479 (629)
T KOG0336|consen 435 --------------------------------AVKSVKQNIIVTTDSEKLEIVQFFVANM---SSNDKVIIFVSRKVMAD 479 (629)
T ss_pred --------------------------------eeeeeeeeEEecccHHHHHHHHHHHHhc---CCCceEEEEEechhhhh
Confidence 2234556665566778888777777764 56789999999999988
Q ss_pred hHHHhhhhhcCCCCCCChhHHHhhhhccceeeecCCCCHHHHHHHHHhhhcCCCcEEEeecccccCCCCCCCcEEEEeCC
Q 010357 334 FHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDS 413 (512)
Q Consensus 334 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~l~g~~~~~~r~~~~~~f~~~~~~vLvaT~~~~~Gldip~~~~VI~~~~ 413 (512)
.+...|.-. ++....+||+-++.+|+..++.|++|+++|||||+.+++|+|+|++++|++||.
T Consensus 480 ~LSSd~~l~-----------------gi~~q~lHG~r~Q~DrE~al~~~ksG~vrILvaTDlaSRGlDv~DiTHV~NyDF 542 (629)
T KOG0336|consen 480 HLSSDFCLK-----------------GISSQSLHGNREQSDREMALEDFKSGEVRILVATDLASRGLDVPDITHVYNYDF 542 (629)
T ss_pred hccchhhhc-----------------ccchhhccCChhhhhHHHHHHhhhcCceEEEEEechhhcCCCchhcceeeccCC
Confidence 887777554 888889999999999999999999999999999999999999999999999999
Q ss_pred CCChhHHHHhhhhcccCCCCccEEEecCccchhHHHHHH
Q 010357 414 AGEATEYVHRVGRTARLGERGDSLLFLQPVEMDYLQDLE 452 (512)
Q Consensus 414 p~s~~~~~Q~~GRagR~g~~g~~~~~~~~~~~~~~~~l~ 452 (512)
|.+++.|+||+||+||+|+.|.++.|+...|......|.
T Consensus 543 P~nIeeYVHRvGrtGRaGr~G~sis~lt~~D~~~a~eLI 581 (629)
T KOG0336|consen 543 PRNIEEYVHRVGRTGRAGRTGTSISFLTRNDWSMAEELI 581 (629)
T ss_pred CccHHHHHHHhcccccCCCCcceEEEEehhhHHHHHHHH
Confidence 999999999999999999999999999988855544443
No 24
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.9e-55 Score=396.97 Aligned_cols=365 Identities=33% Similarity=0.503 Sum_probs=321.8
Q ss_pred CCcccCCCCHHHHHHHHHhcCCCCCcHHHHHHHHHhhcCCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEE
Q 010357 18 CSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFAL 97 (512)
Q Consensus 18 ~~~~~~~l~~~~~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~l 97 (512)
.+|+++||++.+++++. ..|+..|+-+|..++|.+++|+|++..|.||||||.+|++|+++.+.....-.....+..++
T Consensus 19 ktFe~~gLD~RllkAi~-~lG~ekpTlIQs~aIplaLEgKDvvarArTGSGKT~AYliPllqkll~~k~t~~~e~~~sa~ 97 (569)
T KOG0346|consen 19 KTFEEFGLDSRLLKAIT-KLGWEKPTLIQSSAIPLALEGKDVVARARTGSGKTAAYLIPLLQKLLAEKKTNDGEQGPSAV 97 (569)
T ss_pred ccHHHhCCCHHHHHHHH-HhCcCCcchhhhcccchhhcCcceeeeeccCCCchHHHHHHHHHHHHHhhhcccccccceeE
Confidence 68999999999999995 56999999999999999999999999999999999999999999998876554566789999
Q ss_pred EEcCcHHHHHHHHHHHHHHHhhcCC-cceEEEeCCCchHHHHHHHcCCCCEEEeCChHHHHHHhhcCCCcCCceeEEEEc
Q 010357 98 VLVPTRELCLQVYEILHKLLHRFHW-IVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFD 176 (512)
Q Consensus 98 il~Pt~~L~~q~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lV~D 176 (512)
|++||++||.|++..+.++...... +....+....+.......+...++|+|+||.+++.++.......+..+.++|+|
T Consensus 98 iLvPTkEL~qQvy~viekL~~~c~k~lr~~nl~s~~sdsv~~~~L~d~pdIvV~TP~~ll~~~~~~~~~~~~~l~~LVvD 177 (569)
T KOG0346|consen 98 ILVPTKELAQQVYKVIEKLVEYCSKDLRAINLASSMSDSVNSVALMDLPDIVVATPAKLLRHLAAGVLEYLDSLSFLVVD 177 (569)
T ss_pred EEechHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchHHHHHHHccCCCeEEeChHHHHHHHhhccchhhhheeeEEec
Confidence 9999999999999999999876552 222223333444444466778899999999999999988665677899999999
Q ss_pred chhHHHhcCchHHHHHHHHHhccCCCCCCCCCCcccccceeEEEEEEecchhhHHHHHhhcCCCeEEccCCCcCCCCccc
Q 010357 177 EADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLPEDKSH 256 (512)
Q Consensus 177 Eah~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (512)
|||.++..||...+..+.+.+|+ ..|-++||||+++++..+..+++++|.++.+....+
T Consensus 178 EADLllsfGYeedlk~l~~~LPr---------------~~Q~~LmSATl~dDv~~LKkL~l~nPviLkl~e~el------ 236 (569)
T KOG0346|consen 178 EADLLLSFGYEEDLKKLRSHLPR---------------IYQCFLMSATLSDDVQALKKLFLHNPVILKLTEGEL------ 236 (569)
T ss_pred hhhhhhhcccHHHHHHHHHhCCc---------------hhhheeehhhhhhHHHHHHHHhccCCeEEEeccccC------
Confidence 99999999999999999999997 889999999999999999999999999987776653
Q ss_pred cccCCcccchhhhccCCCccccccccccccccceeeeEEEecCCchHHHHHHHHHhhhccccCceEEEEeecchhhhhHH
Q 010357 257 VRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHY 336 (512)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~ 336 (512)
..+.++.++.+.+...+|...++.+++-. --.++.|||+|+.+.|-.+.
T Consensus 237 ----------------------------~~~dqL~Qy~v~cse~DKflllyallKL~---LI~gKsliFVNtIdr~YrLk 285 (569)
T KOG0346|consen 237 ----------------------------PNPDQLTQYQVKCSEEDKFLLLYALLKLR---LIRGKSLIFVNTIDRCYRLK 285 (569)
T ss_pred ----------------------------CCcccceEEEEEeccchhHHHHHHHHHHH---HhcCceEEEEechhhhHHHH
Confidence 24688999999999999998888887743 23589999999999999999
Q ss_pred HhhhhhcCCCCCCChhHHHhhhhccceeeecCCCCHHHHHHHHHhhhcCCCcEEEeec----------------------
Q 010357 337 SLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTD---------------------- 394 (512)
Q Consensus 337 ~~l~~~~~~~~~~~~~~~~~~~~~~~v~~l~g~~~~~~r~~~~~~f~~~~~~vLvaT~---------------------- 394 (512)
-.|..+ |++.++++|.|+..-|--++++|.+|-.+++||||
T Consensus 286 LfLeqF-----------------GiksciLNseLP~NSR~Hii~QFNkG~YdivIAtD~s~~~~~~eee~kgk~~e~~~k 348 (569)
T KOG0346|consen 286 LFLEQF-----------------GIKSCILNSELPANSRCHIIEQFNKGLYDIVIATDDSADGDKLEEEVKGKSDEKNPK 348 (569)
T ss_pred HHHHHh-----------------CcHhhhhcccccccchhhHHHHhhCcceeEEEEccCccchhhhhccccccccccCCC
Confidence 999988 88999999999999999999999999999999999
Q ss_pred -------------ccccCCCCCCCcEEEEeCCCCChhHHHHhhhhcccCCCCccEEEecCccchhHHHHHH
Q 010357 395 -------------VAARGLDFPKVKCIIQYDSAGEATEYVHRVGRTARLGERGDSLLFLQPVEMDYLQDLE 452 (512)
Q Consensus 395 -------------~~~~Gldip~~~~VI~~~~p~s~~~~~Q~~GRagR~g~~g~~~~~~~~~~~~~~~~l~ 452 (512)
-+++|||+.++..|++||+|.++..|+||+||++|.+++|.+..|+.|.+..-...++
T Consensus 349 ndkkskkK~D~E~GVsRGIDF~~V~~VlNFD~P~t~~sYIHRvGRTaRg~n~GtalSfv~P~e~~g~~~le 419 (569)
T KOG0346|consen 349 NDKKSKKKLDKESGVSRGIDFHHVSNVLNFDFPETVTSYIHRVGRTARGNNKGTALSFVSPKEEFGKESLE 419 (569)
T ss_pred CccccccccCchhchhccccchheeeeeecCCCCchHHHHHhccccccCCCCCceEEEecchHHhhhhHHH
Confidence 1468999999999999999999999999999999999999999999998866433333
No 25
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1e-53 Score=400.22 Aligned_cols=369 Identities=33% Similarity=0.508 Sum_probs=319.2
Q ss_pred CcccCCCCHHHHHHHHHhcCCCCCcHHHHHHHHHhhcCCCEEEEccCCChHhHHHHHHHHHHHhhcCCC----CCCCCCc
Q 010357 19 SFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPR----IDRSSGT 94 (512)
Q Consensus 19 ~~~~~~l~~~~~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~----~~~~~~~ 94 (512)
+|.+-.+.+.+...+ +..|+..|+|+|+.+++.+..|++++++|+||||||.+|++|++.++....+. ......+
T Consensus 75 ~f~~~~l~~~l~~ni-~~~~~~~ptpvQk~sip~i~~Grdl~acAqTGsGKT~aFLiPii~~~~~~~~~~~~~~~~~~~P 153 (482)
T KOG0335|consen 75 TFDEAILGEALAGNI-KRSGYTKPTPVQKYSIPIISGGRDLMACAQTGSGKTAAFLIPIISYLLDEGPEDRGESGGGVYP 153 (482)
T ss_pred cccccchhHHHhhcc-ccccccCCCcceeeccceeecCCceEEEccCCCcchHHHHHHHHHHHHhcCcccCcccCCCCCC
Confidence 788888889999998 56799999999999999999999999999999999999999999998876431 1112358
Q ss_pred eEEEEcCcHHHHHHHHHHHHHHHhhcCCcceEEEeCCCchHHHHHHHcCCCCEEEeCChHHHHHHhhcCCCcCCceeEEE
Q 010357 95 FALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWII 174 (512)
Q Consensus 95 ~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lV 174 (512)
.++|++|||+|+.|++++.+++..... ......++|.+.......+.++++|+|+||++|.+++.. +.+.+.+++++|
T Consensus 154 ~~lIlapTReL~~Qi~nea~k~~~~s~-~~~~~~ygg~~~~~q~~~~~~gcdIlvaTpGrL~d~~e~-g~i~l~~~k~~v 231 (482)
T KOG0335|consen 154 RALILAPTRELVDQIYNEARKFSYLSG-MKSVVVYGGTDLGAQLRFIKRGCDILVATPGRLKDLIER-GKISLDNCKFLV 231 (482)
T ss_pred ceEEEeCcHHHhhHHHHHHHhhccccc-ceeeeeeCCcchhhhhhhhccCccEEEecCchhhhhhhc-ceeehhhCcEEE
Confidence 899999999999999999999876544 566778899998899999999999999999999998876 777788999999
Q ss_pred EcchhHHHh-cCchHHHHHHHHHhccCCCCCCCCCCcccccceeEEEEEEecchhhHHHHHhhcCC-CeEEccCCCcCCC
Q 010357 175 FDEADRILE-LGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLET-PVLIGLDEKKLPE 252 (512)
Q Consensus 175 ~DEah~l~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 252 (512)
+||||+|++ .+|+..++.|+...... .....|.+++|||.+..+......++.+ +..+.+..-.
T Consensus 232 LDEADrMlD~mgF~p~Ir~iv~~~~~~-----------~~~~~qt~mFSAtfp~~iq~l~~~fl~~~yi~laV~rvg--- 297 (482)
T KOG0335|consen 232 LDEADRMLDEMGFEPQIRKIVEQLGMP-----------PKNNRQTLLFSATFPKEIQRLAADFLKDNYIFLAVGRVG--- 297 (482)
T ss_pred ecchHHhhhhccccccHHHHhcccCCC-----------CccceeEEEEeccCChhhhhhHHHHhhccceEEEEeeec---
Confidence 999999999 89999999999887652 2337899999999999888877776665 4444333221
Q ss_pred CccccccCCcccchhhhccCCCccccccccccccccceeeeEEEecCCchHHHHHHHHHhhhccccCc-----eEEEEee
Q 010357 253 DKSHVRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQ-----KLVVFFS 327 (512)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~-----~~lvf~~ 327 (512)
...+++.+....+...+|...+++++.........+ +++|||+
T Consensus 298 --------------------------------~~~~ni~q~i~~V~~~~kr~~Lldll~~~~~~~~~~~~~~e~tlvFvE 345 (482)
T KOG0335|consen 298 --------------------------------STSENITQKILFVNEMEKRSKLLDLLNKDDGPPSDGEPKWEKTLVFVE 345 (482)
T ss_pred --------------------------------cccccceeEeeeecchhhHHHHHHHhhcccCCcccCCcccceEEEEee
Confidence 346778899999999999999999998765322233 8999999
Q ss_pred cchhhhhHHHhhhhhcCCCCCCChhHHHhhhhccceeeecCCCCHHHHHHHHHhhhcCCCcEEEeecccccCCCCCCCcE
Q 010357 328 TCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKC 407 (512)
Q Consensus 328 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~l~g~~~~~~r~~~~~~f~~~~~~vLvaT~~~~~Gldip~~~~ 407 (512)
+++.+..++..|... ++++..+||+.++.+|.+.++.|++|...+||||+++++|+|+|+|++
T Consensus 346 t~~~~d~l~~~l~~~-----------------~~~~~sIhg~~tq~er~~al~~Fr~g~~pvlVaT~VaaRGlDi~~V~h 408 (482)
T KOG0335|consen 346 TKRGADELAAFLSSN-----------------GYPAKSIHGDRTQIEREQALNDFRNGKAPVLVATNVAARGLDIPNVKH 408 (482)
T ss_pred ccchhhHHHHHHhcC-----------------CCCceeecchhhhhHHHHHHHHhhcCCcceEEEehhhhcCCCCCCCce
Confidence 999999999999988 888999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCChhHHHHhhhhcccCCCCccEEEecCccchhHHHHHHH
Q 010357 408 IIQYDSAGEATEYVHRVGRTARLGERGDSLLFLQPVEMDYLQDLEK 453 (512)
Q Consensus 408 VI~~~~p~s~~~~~Q~~GRagR~g~~g~~~~~~~~~~~~~~~~l~~ 453 (512)
||+||+|....+|+||+||+||.|+.|.++.|++..+....+.|.+
T Consensus 409 VInyDmP~d~d~YvHRIGRTGR~Gn~G~atsf~n~~~~~i~~~L~~ 454 (482)
T KOG0335|consen 409 VINYDMPADIDDYVHRIGRTGRVGNGGRATSFFNEKNQNIAKALVE 454 (482)
T ss_pred eEEeecCcchhhHHHhccccccCCCCceeEEEeccccchhHHHHHH
Confidence 9999999999999999999999999999999999777655555544
No 26
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=6.9e-55 Score=404.79 Aligned_cols=374 Identities=32% Similarity=0.474 Sum_probs=299.1
Q ss_pred ccccCccCCcccCCCCHHHHHHHHHhcCCCCCcHHHHHHHHHhhcC-CCEEEEccCCChHhHHHHHHHHHHHhhcCCCC-
Q 010357 11 VKEIFASCSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSG-RHVLVNAATGTGKTVAYLAPIINHLQSYSPRI- 88 (512)
Q Consensus 11 ~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~Q~~~~~~~~~~-~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~- 88 (512)
....-...-|.+++++.+++++| ..+||.+|+++|.-.+|.+..| .+++-.|.||||||++|.+|+++.+.......
T Consensus 174 ~~~~~DvsAW~~l~lp~~iL~aL-~~~gFs~Pt~IQsl~lp~ai~gk~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~ 252 (731)
T KOG0347|consen 174 DSSKVDVSAWKNLFLPMEILRAL-SNLGFSRPTEIQSLVLPAAIRGKVDILGAAETGSGKTLAFGIPIVERLLESSDDSQ 252 (731)
T ss_pred cccccChHHHhcCCCCHHHHHHH-HhcCCCCCccchhhcccHhhccchhcccccccCCCceeeecchhhhhhhhccchHh
Confidence 33445566799999999999999 5679999999999999999988 69999999999999999999999655432210
Q ss_pred ----CCCCCce--EEEEcCcHHHHHHHHHHHHHHHhhcCCcceEEEeCCCchHHHHHHHcCCCCEEEeCChHHHHHHhhc
Q 010357 89 ----DRSSGTF--ALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHT 162 (512)
Q Consensus 89 ----~~~~~~~--~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~ 162 (512)
.+....+ .||++|||+||.|+.+.+..+....+ +.+..+.||-....+-+.++..++|+|+||++|+.++...
T Consensus 253 e~~~~~~k~~k~~~LV~tPTRELa~QV~~Hl~ai~~~t~-i~v~si~GGLavqKQqRlL~~~p~IVVATPGRlweli~e~ 331 (731)
T KOG0347|consen 253 ELSNTSAKYVKPIALVVTPTRELAHQVKQHLKAIAEKTQ-IRVASITGGLAVQKQQRLLNQRPDIVVATPGRLWELIEED 331 (731)
T ss_pred hhhhHHhccCcceeEEecChHHHHHHHHHHHHHhccccC-eEEEEeechhHHHHHHHHHhcCCCEEEecchHHHHHHHhh
Confidence 1122334 99999999999999999999988655 6778889999999999999999999999999999999886
Q ss_pred CCC--cCCceeEEEEcchhHHHhcCchHHHHHHHHHhccCCCCCCCCCCcccccceeEEEEEEecchh------------
Q 010357 163 SSF--LHTNLRWIIFDEADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEK------------ 228 (512)
Q Consensus 163 ~~~--~~~~~~~lV~DEah~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~------------ 228 (512)
..+ .+.+++++|+||+|+|.+.|+...+..++..+.. +..+...|.+++|||++-.
T Consensus 332 n~~l~~~k~vkcLVlDEaDRmvekghF~Els~lL~~L~e----------~~~~~qrQTlVFSATlt~~~~~~~~~~~k~~ 401 (731)
T KOG0347|consen 332 NTHLGNFKKVKCLVLDEADRMVEKGHFEELSKLLKHLNE----------EQKNRQRQTLVFSATLTLVLQQPLSSSRKKK 401 (731)
T ss_pred hhhhhhhhhceEEEEccHHHHhhhccHHHHHHHHHHhhh----------hhcccccceEEEEEEeehhhcChhHHhhhcc
Confidence 553 4678999999999999999999999999999873 1233378999999998521
Q ss_pred ---------hHHHHHh-hc-CCCeEEccCCCcCCCCccccccCCcccchhhhccCCCccccccccccccccceeeeEEEe
Q 010357 229 ---------VNHLAKI-SL-ETPVLIGLDEKKLPEDKSHVRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKV 297 (512)
Q Consensus 229 ---------~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (512)
++.+.+. .+ ..|.++...... .....+....+.|
T Consensus 402 ~k~~~~~~kiq~Lmk~ig~~~kpkiiD~t~q~-----------------------------------~ta~~l~Es~I~C 446 (731)
T KOG0347|consen 402 DKEDELNAKIQHLMKKIGFRGKPKIIDLTPQS-----------------------------------ATASTLTESLIEC 446 (731)
T ss_pred chhhhhhHHHHHHHHHhCccCCCeeEecCcch-----------------------------------hHHHHHHHHhhcC
Confidence 1111111 11 223333333221 0111122222223
Q ss_pred cCCchHHHHHHHHHhhhccccCceEEEEeecchhhhhHHHhhhhhcCCCCCCChhHHHhhhhccceeeecCCCCHHHHHH
Q 010357 298 PCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRT 377 (512)
Q Consensus 298 ~~~~k~~~l~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~l~g~~~~~~r~~ 377 (512)
+..+|--.++.+|- .-++++|||||+++.+..++-+|... ++..+.+|+.|.+.+|.+
T Consensus 447 ~~~eKD~ylyYfl~-----ryPGrTlVF~NsId~vKRLt~~L~~L-----------------~i~p~~LHA~M~QKqRLk 504 (731)
T KOG0347|consen 447 PPLEKDLYLYYFLT-----RYPGRTLVFCNSIDCVKRLTVLLNNL-----------------DIPPLPLHASMIQKQRLK 504 (731)
T ss_pred CccccceeEEEEEe-----ecCCceEEEechHHHHHHHHHHHhhc-----------------CCCCchhhHHHHHHHHHH
Confidence 33333222222222 23689999999999999999999988 889999999999999999
Q ss_pred HHHhhhcCCCcEEEeecccccCCCCCCCcEEEEeCCCCChhHHHHhhhhcccCCCCccEEEecCccchhHHHHHHH
Q 010357 378 TFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRVGRTARLGERGDSLLFLQPVEMDYLQDLEK 453 (512)
Q Consensus 378 ~~~~f~~~~~~vLvaT~~~~~Gldip~~~~VI~~~~p~s~~~~~Q~~GRagR~g~~g~~~~~~~~~~~~~~~~l~~ 453 (512)
.+++|++....||||||++++|+|+|++.|||||..|.+.+.|+||.||++|++..|.+++++.|.+...++.|.+
T Consensus 505 nLEkF~~~~~~VLiaTDVAARGLDIp~V~HVIHYqVPrtseiYVHRSGRTARA~~~Gvsvml~~P~e~~~~~KL~k 580 (731)
T KOG0347|consen 505 NLEKFKQSPSGVLIATDVAARGLDIPGVQHVIHYQVPRTSEIYVHRSGRTARANSEGVSVMLCGPQEVGPLKKLCK 580 (731)
T ss_pred hHHHHhcCCCeEEEeehhhhccCCCCCcceEEEeecCCccceeEecccccccccCCCeEEEEeChHHhHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999888777776
No 27
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=100.00 E-value=2.7e-54 Score=384.62 Aligned_cols=354 Identities=32% Similarity=0.545 Sum_probs=309.3
Q ss_pred cCCcccCCCCHHHHHHHHHhcCCCCCcHHHHHHHHHhhcCCCEEEEccCCChHhHHHHHHHHHHHhhcC--CCCCCCCCc
Q 010357 17 SCSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYS--PRIDRSSGT 94 (512)
Q Consensus 17 ~~~~~~~~l~~~~~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~--~~~~~~~~~ 94 (512)
-.+|.++.++..+++.|++ .|+.+|+|+|-+.+|.+++|++.+-.|-||||||++|.+|+........ -...++.|+
T Consensus 169 IksF~eMKFP~~~L~~lk~-KGI~~PTpIQvQGlPvvLsGRDmIGIAfTGSGKTlvFvLP~imf~LeqE~~lPf~~~EGP 247 (610)
T KOG0341|consen 169 IKSFKEMKFPKPLLRGLKK-KGIVHPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPVIMFALEQEMMLPFARGEGP 247 (610)
T ss_pred hhhhhhccCCHHHHHHHHh-cCCCCCCceeecCcceEeecCceeeEEeecCCceEEEeHHHHHHHHHHHhcCccccCCCC
Confidence 3589999999999999976 5999999999999999999999999999999999999999877665432 345667899
Q ss_pred eEEEEcCcHHHHHHHHHHHHHHHhhc-----CCcceEEEeCCCchHHHHHHHcCCCCEEEeCChHHHHHHhhcCCCcCCc
Q 010357 95 FALVLVPTRELCLQVYEILHKLLHRF-----HWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTN 169 (512)
Q Consensus 95 ~~lil~Pt~~L~~q~~~~~~~~~~~~-----~~~~~~~~~~g~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~ 169 (512)
..||+||+|+|+.|..+.+..++..+ +......+.||.....+.+..+.+.+|+|+||++|.+.+.+ +...+.-
T Consensus 248 ~gLiicPSRELArQt~~iie~~~~~L~e~g~P~lRs~LciGG~~v~eql~~v~~GvHivVATPGRL~DmL~K-K~~sLd~ 326 (610)
T KOG0341|consen 248 YGLIICPSRELARQTHDIIEQYVAALQEAGYPELRSLLCIGGVPVREQLDVVRRGVHIVVATPGRLMDMLAK-KIMSLDA 326 (610)
T ss_pred eeEEEcCcHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhhcCccHHHHHHHHhcCeeEEEcCcchHHHHHHH-hhccHHH
Confidence 99999999999999999888776532 34566778899999999999999999999999999999987 6667778
Q ss_pred eeEEEEcchhHHHhcCchHHHHHHHHHhccCCCCCCCCCCcccccceeEEEEEEecchhhHHHHHhhcCCCeEEccCCCc
Q 010357 170 LRWIIFDEADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKK 249 (512)
Q Consensus 170 ~~~lV~DEah~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (512)
.+++.+||||++.+.+|...++.++..++. .+|.+++|||+|..++.|.+..+-.|..+.+....
T Consensus 327 CRyL~lDEADRmiDmGFEddir~iF~~FK~---------------QRQTLLFSATMP~KIQ~FAkSALVKPvtvNVGRAG 391 (610)
T KOG0341|consen 327 CRYLTLDEADRMIDMGFEDDIRTIFSFFKG---------------QRQTLLFSATMPKKIQNFAKSALVKPVTVNVGRAG 391 (610)
T ss_pred HHHhhhhhHHHHhhccchhhHHHHHHHHhh---------------hhheeeeeccccHHHHHHHHhhcccceEEeccccc
Confidence 899999999999999999999999999998 88999999999999999999999999888776542
Q ss_pred CCCCccccccCCcccchhhhccCCCccccccccccccccceeeeEEEecCCchHHHHHHHHHhhhccccCceEEEEeecc
Q 010357 250 LPEDKSHVRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTC 329 (512)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~lvf~~~~ 329 (512)
. ..-++.+.+..+..+.|+..+++-+.+ ...+++|||..+
T Consensus 392 A-----------------------------------AsldViQevEyVkqEaKiVylLeCLQK-----T~PpVLIFaEkK 431 (610)
T KOG0341|consen 392 A-----------------------------------ASLDVIQEVEYVKQEAKIVYLLECLQK-----TSPPVLIFAEKK 431 (610)
T ss_pred c-----------------------------------cchhHHHHHHHHHhhhhhhhHHHHhcc-----CCCceEEEeccc
Confidence 1 112233344444555666666665543 246999999999
Q ss_pred hhhhhHHHhhhhhcCCCCCCChhHHHhhhhccceeeecCCCCHHHHHHHHHhhhcCCCcEEEeecccccCCCCCCCcEEE
Q 010357 330 DAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCII 409 (512)
Q Consensus 330 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~l~g~~~~~~r~~~~~~f~~~~~~vLvaT~~~~~Gldip~~~~VI 409 (512)
..+..+.++|--. |..++.+||+-++++|...++.|+.|+.+|||||++++.|+|+|++.+||
T Consensus 432 ~DVD~IhEYLLlK-----------------GVEavaIHGGKDQedR~~ai~afr~gkKDVLVATDVASKGLDFp~iqHVI 494 (610)
T KOG0341|consen 432 ADVDDIHEYLLLK-----------------GVEAVAIHGGKDQEDRHYAIEAFRAGKKDVLVATDVASKGLDFPDIQHVI 494 (610)
T ss_pred cChHHHHHHHHHc-----------------cceeEEeecCcchhHHHHHHHHHhcCCCceEEEecchhccCCCccchhhc
Confidence 9999999998665 88899999999999999999999999999999999999999999999999
Q ss_pred EeCCCCChhHHHHhhhhcccCCCCccEEEecCccc
Q 010357 410 QYDSAGEATEYVHRVGRTARLGERGDSLLFLQPVE 444 (512)
Q Consensus 410 ~~~~p~s~~~~~Q~~GRagR~g~~g~~~~~~~~~~ 444 (512)
|||+|..+++|+||+||+||.|+.|.+..|+++..
T Consensus 495 NyDMP~eIENYVHRIGRTGRsg~~GiATTfINK~~ 529 (610)
T KOG0341|consen 495 NYDMPEEIENYVHRIGRTGRSGKTGIATTFINKNQ 529 (610)
T ss_pred cCCChHHHHHHHHHhcccCCCCCcceeeeeecccc
Confidence 99999999999999999999999999999999754
No 28
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.3e-52 Score=372.31 Aligned_cols=372 Identities=25% Similarity=0.454 Sum_probs=311.1
Q ss_pred cccccccCccCCcccCCCCHHHHHHHHHhcCCCCCcHHHHHHHHHhhcC--CCEEEEccCCChHhHHHHHHHHHHHhhcC
Q 010357 8 KETVKEIFASCSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSG--RHVLVNAATGTGKTVAYLAPIINHLQSYS 85 (512)
Q Consensus 8 ~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~Q~~~~~~~~~~--~~~lv~~pTGsGKT~~~~~~~~~~~~~~~ 85 (512)
.+.++|+++..+|++|+|++++++.++. |+|..|+.+|..|+|.++.. +|.|.++..|+|||.+|.+.|+.+.....
T Consensus 80 ~dpnsPlyS~ksFeeL~LkPellkgly~-M~F~kPskIQe~aLPlll~~Pp~nlIaQsqsGtGKTaaFvL~MLsrvd~~~ 158 (477)
T KOG0332|consen 80 ADPNSPLYSAKSFEELRLKPELLKGLYA-MKFQKPSKIQETALPLLLAEPPQNLIAQSQSGTGKTAAFVLTMLSRVDPDV 158 (477)
T ss_pred cCCCCCccccccHHhhCCCHHHHhHHHH-hccCCcchHHHhhcchhhcCCchhhhhhhcCCCchhHHHHHHHHHhcCccc
Confidence 3578999999999999999999999964 99999999999999999965 78999999999999999999988765432
Q ss_pred CCCCCCCCceEEEEcCcHHHHHHHHHHHHHHHhhcCCcceEEEeCCCchHHHHHHHcCCCCEEEeCChHHHHHHhhcCCC
Q 010357 86 PRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSF 165 (512)
Q Consensus 86 ~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~ 165 (512)
.-+++++++||++||.|..+.+.+.+++. .+...+...|..... ...-..+|+|+||+.+.+++...+.+
T Consensus 159 ------~~PQ~iCLaPtrELA~Q~~eVv~eMGKf~-~ita~yair~sk~~r---G~~i~eqIviGTPGtv~Dlm~klk~i 228 (477)
T KOG0332|consen 159 ------VVPQCICLAPTRELAPQTGEVVEEMGKFT-ELTASYAIRGSKAKR---GNKLTEQIVIGTPGTVLDLMLKLKCI 228 (477)
T ss_pred ------cCCCceeeCchHHHHHHHHHHHHHhcCce-eeeEEEEecCccccc---CCcchhheeeCCCccHHHHHHHHHhh
Confidence 25668999999999999999999998765 345555554431110 01112479999999999999988888
Q ss_pred cCCceeEEEEcchhHHHhc-CchHHHHHHHHHhccCCCCCCCCCCcccccceeEEEEEEecchhhHHHHHhhcCCCeEEc
Q 010357 166 LHTNLRWIIFDEADRILEL-GFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIG 244 (512)
Q Consensus 166 ~~~~~~~lV~DEah~l~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~ 244 (512)
.+..++.+|+|||+.+.+. ||.++-..|...+++ ..|++++|||....+..+......++..+.
T Consensus 229 d~~kikvfVlDEAD~Mi~tqG~~D~S~rI~~~lP~---------------~~QllLFSATf~e~V~~Fa~kivpn~n~i~ 293 (477)
T KOG0332|consen 229 DLEKIKVFVLDEADVMIDTQGFQDQSIRIMRSLPR---------------NQQLLLFSATFVEKVAAFALKIVPNANVII 293 (477)
T ss_pred ChhhceEEEecchhhhhhcccccccchhhhhhcCC---------------cceEEeeechhHHHHHHHHHHhcCCCceee
Confidence 8999999999999998764 688888888888876 899999999999999999999998888776
Q ss_pred cCCCcCCCCccccccCCcccchhhhccCCCccccccccccccccceeeeEEEecC-CchHHHHHHHHHhhhccccCceEE
Q 010357 245 LDEKKLPEDKSHVRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPC-GSRLAVLLSILKHLFDTEVSQKLV 323 (512)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~k~~~l~~~l~~~~~~~~~~~~l 323 (512)
+..+.+ ...++.+.++.|.. .+|..++.++. .. ..-+..|
T Consensus 294 Lk~eel-----------------------------------~L~~IkQlyv~C~~~~~K~~~l~~ly-g~---~tigqsi 334 (477)
T KOG0332|consen 294 LKREEL-----------------------------------ALDNIKQLYVLCACRDDKYQALVNLY-GL---LTIGQSI 334 (477)
T ss_pred eehhhc-----------------------------------cccchhhheeeccchhhHHHHHHHHH-hh---hhhhheE
Confidence 666542 23456677777754 56777777733 32 2347899
Q ss_pred EEeecchhhhhHHHhhhhhcCCCCCCChhHHHhhhhccceeeecCCCCHHHHHHHHHhhhcCCCcEEEeecccccCCCCC
Q 010357 324 VFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFP 403 (512)
Q Consensus 324 vf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~l~g~~~~~~r~~~~~~f~~~~~~vLvaT~~~~~Gldip 403 (512)
|||.+++.+.+++..+.+. |..+..+||+|..++|..++++|+.|..+|||+|+++++|+|++
T Consensus 335 IFc~tk~ta~~l~~~m~~~-----------------Gh~V~~l~G~l~~~~R~~ii~~Fr~g~~kVLitTnV~ARGiDv~ 397 (477)
T KOG0332|consen 335 IFCHTKATAMWLYEEMRAE-----------------GHQVSLLHGDLTVEQRAAIIDRFREGKEKVLITTNVCARGIDVA 397 (477)
T ss_pred EEEeehhhHHHHHHHHHhc-----------------CceeEEeeccchhHHHHHHHHHHhcCcceEEEEechhhcccccc
Confidence 9999999999999999998 88999999999999999999999999999999999999999999
Q ss_pred CCcEEEEeCCCC------ChhHHHHhhhhcccCCCCccEEEecCcc-chhHHHHHHHc-CCCCCcc
Q 010357 404 KVKCIIQYDSAG------EATEYVHRVGRTARLGERGDSLLFLQPV-EMDYLQDLEKH-GVSLTEY 461 (512)
Q Consensus 404 ~~~~VI~~~~p~------s~~~~~Q~~GRagR~g~~g~~~~~~~~~-~~~~~~~l~~~-~~~~~~~ 461 (512)
.+++||+||.|. .++.|+||+||+||.|+.|.++.|++.. +...++.+++. +..+.++
T Consensus 398 qVs~VvNydlP~~~~~~pD~etYlHRiGRtGRFGkkG~a~n~v~~~~s~~~mn~iq~~F~~~i~~~ 463 (477)
T KOG0332|consen 398 QVSVVVNYDLPVKYTGEPDYETYLHRIGRTGRFGKKGLAINLVDDKDSMNIMNKIQKHFNMKIKRL 463 (477)
T ss_pred eEEEEEecCCccccCCCCCHHHHHHHhcccccccccceEEEeecccCcHHHHHHHHHHHhhcceec
Confidence 999999999985 7889999999999999999999998764 46677777774 3433333
No 29
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=100.00 E-value=9.5e-51 Score=420.69 Aligned_cols=374 Identities=19% Similarity=0.274 Sum_probs=268.2
Q ss_pred CCCHHHHHHHHHhcCCCCCcHHHHHHHHHhhcCCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcH
Q 010357 24 GLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTR 103 (512)
Q Consensus 24 ~l~~~~~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~ 103 (512)
.+++++.+.|. .+||.+|+++|.++++.+++|+|+++++|||||||++|++|+++.+.. ..+.++||++||+
T Consensus 20 ~l~~~l~~~L~-~~g~~~p~~~Q~~ai~~il~G~nvvv~apTGSGKTla~~LPiL~~l~~-------~~~~~aL~l~Ptr 91 (742)
T TIGR03817 20 WAHPDVVAALE-AAGIHRPWQHQARAAELAHAGRHVVVATGTASGKSLAYQLPVLSALAD-------DPRATALYLAPTK 91 (742)
T ss_pred cCCHHHHHHHH-HcCCCcCCHHHHHHHHHHHCCCCEEEECCCCCcHHHHHHHHHHHHHhh-------CCCcEEEEEcChH
Confidence 38899999995 579999999999999999999999999999999999999999999865 2357899999999
Q ss_pred HHHHHHHHHHHHHHhhcCCcceEEEeCCCchHHHHHHHcCCCCEEEeCChHHHHHHhhcC---CCcCCceeEEEEcchhH
Q 010357 104 ELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTS---SFLHTNLRWIIFDEADR 180 (512)
Q Consensus 104 ~L~~q~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~---~~~~~~~~~lV~DEah~ 180 (512)
+|+.|+.+.++.+. . ....+.. ++|+........+..+++|+|+||+++...+.... ...++++++||+||||.
T Consensus 92 aLa~q~~~~l~~l~-~-~~i~v~~-~~Gdt~~~~r~~i~~~~~IivtTPd~L~~~~L~~~~~~~~~l~~l~~vViDEah~ 168 (742)
T TIGR03817 92 ALAADQLRAVRELT-L-RGVRPAT-YDGDTPTEERRWAREHARYVLTNPDMLHRGILPSHARWARFLRRLRYVVIDECHS 168 (742)
T ss_pred HHHHHHHHHHHHhc-c-CCeEEEE-EeCCCCHHHHHHHhcCCCEEEEChHHHHHhhccchhHHHHHHhcCCEEEEeChhh
Confidence 99999999999886 2 2234444 44555566666677789999999999975332111 11357899999999999
Q ss_pred HHhcCchHHHHHHHHHhccCCCCCCCCCCcccccceeEEEEEEecchhhHHHHHhhcCCCeEEccCCCcCCCCccccccC
Q 010357 181 ILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLPEDKSHVRFG 260 (512)
Q Consensus 181 l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (512)
+.+ .|+..+..++.+++.... ..+..+|++++|||+++..+. ....+..+..+ +.....+.......+
T Consensus 169 ~~g-~fg~~~~~il~rL~ri~~--------~~g~~~q~i~~SATi~n~~~~-~~~l~g~~~~~-i~~~~~~~~~~~~~~- 236 (742)
T TIGR03817 169 YRG-VFGSHVALVLRRLRRLCA--------RYGASPVFVLASATTADPAAA-ASRLIGAPVVA-VTEDGSPRGARTVAL- 236 (742)
T ss_pred ccC-ccHHHHHHHHHHHHHHHH--------hcCCCCEEEEEecCCCCHHHH-HHHHcCCCeEE-ECCCCCCcCceEEEE-
Confidence 876 488888887777653211 011268999999999988664 44455555433 222111110000000
Q ss_pred CcccchhhhccCCCccccccccccccccceeeeEEEecCCchHHHHHHHHHhhhccccCceEEEEeecchhhhhHHHhhh
Q 010357 261 SLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLS 340 (512)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~ 340 (512)
+...... ... .... ........++...+..++. .+.++||||+|++.++.++..++
T Consensus 237 -~~p~~~~-----------~~~----~~~~--~~r~~~~~~~~~~l~~l~~------~~~~~IVF~~sr~~ae~l~~~l~ 292 (742)
T TIGR03817 237 -WEPPLTE-----------LTG----ENGA--PVRRSASAEAADLLADLVA------EGARTLTFVRSRRGAELVAAIAR 292 (742)
T ss_pred -ecCCccc-----------ccc----cccc--ccccchHHHHHHHHHHHHH------CCCCEEEEcCCHHHHHHHHHHHH
Confidence 0000000 000 0000 0000001123333333332 25799999999999999999987
Q ss_pred hhcCCCCCCChhHHHhhhhccceeeecCCCCHHHHHHHHHhhhcCCCcEEEeecccccCCCCCCCcEEEEeCCCCChhHH
Q 010357 341 EFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEY 420 (512)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~v~~l~g~~~~~~r~~~~~~f~~~~~~vLvaT~~~~~Gldip~~~~VI~~~~p~s~~~~ 420 (512)
+...... ...+.++..+||++++++|..+++.|++|++++||||+++++|||+|++++||+++.|.+..+|
T Consensus 293 ~~l~~~~---------~~l~~~v~~~hgg~~~~eR~~ie~~f~~G~i~vLVaTd~lerGIDI~~vd~VI~~~~P~s~~~y 363 (742)
T TIGR03817 293 RLLGEVD---------PDLAERVAAYRAGYLPEDRRELERALRDGELLGVATTNALELGVDISGLDAVVIAGFPGTRASL 363 (742)
T ss_pred HHHHhhc---------cccccchhheecCCCHHHHHHHHHHHHcCCceEEEECchHhccCCcccccEEEEeCCCCCHHHH
Confidence 6421100 0114568889999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhcccCCCCccEEEecC--ccchhHHHHHHH
Q 010357 421 VHRVGRTARLGERGDSLLFLQ--PVEMDYLQDLEK 453 (512)
Q Consensus 421 ~Q~~GRagR~g~~g~~~~~~~--~~~~~~~~~l~~ 453 (512)
+||+|||||.|+.|.++++.. +.|..+++..++
T Consensus 364 ~qRiGRaGR~G~~g~ai~v~~~~~~d~~~~~~~~~ 398 (742)
T TIGR03817 364 WQQAGRAGRRGQGALVVLVARDDPLDTYLVHHPEA 398 (742)
T ss_pred HHhccccCCCCCCcEEEEEeCCChHHHHHHhCHHH
Confidence 999999999999999999986 455556665543
No 30
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.9e-51 Score=376.15 Aligned_cols=373 Identities=32% Similarity=0.539 Sum_probs=324.1
Q ss_pred cccCccCCcccCCCCHHHHHHHHHhcCCCCCcHHHHHHHHHhhcCCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCC
Q 010357 12 KEIFASCSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRS 91 (512)
Q Consensus 12 ~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~ 91 (512)
+|-.+.++|+..|+++.|..++.+. -|..|+|+|-+++|..+.|++++-.|.||||||.+|+.|++.++.. .+....+
T Consensus 217 s~~rpvtsfeh~gfDkqLm~airk~-Ey~kptpiq~qalptalsgrdvigIAktgSgktaAfi~pm~~himd-q~eL~~g 294 (731)
T KOG0339|consen 217 SPPRPVTSFEHFGFDKQLMTAIRKS-EYEKPTPIQCQALPTALSGRDVIGIAKTGSGKTAAFIWPMIVHIMD-QPELKPG 294 (731)
T ss_pred CCCCCcchhhhcCchHHHHHHHhhh-hcccCCcccccccccccccccchheeeccCcchhHHHHHHHHHhcc-hhhhcCC
Confidence 3447889999999999999999755 8999999999999999999999999999999999999999988754 2334446
Q ss_pred CCceEEEEcCcHHHHHHHHHHHHHHHhhcCCcceEEEeCCCchHHHHHHHcCCCCEEEeCChHHHHHHhhcCCCcCCcee
Q 010357 92 SGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLR 171 (512)
Q Consensus 92 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~ 171 (512)
.++..+|++||++|+.|++.+++++++..+ +.+..++||.+.+.+...+..++.||||||++|.+++.. +...+.++.
T Consensus 295 ~gPi~vilvPTrela~Qi~~eaKkf~K~yg-l~~v~~ygGgsk~eQ~k~Lk~g~EivVaTPgRlid~Vkm-Katn~~rvS 372 (731)
T KOG0339|consen 295 EGPIGVILVPTRELASQIFSEAKKFGKAYG-LRVVAVYGGGSKWEQSKELKEGAEIVVATPGRLIDMVKM-KATNLSRVS 372 (731)
T ss_pred CCCeEEEEeccHHHHHHHHHHHHHhhhhcc-ceEEEeecCCcHHHHHHhhhcCCeEEEechHHHHHHHHh-hcccceeee
Confidence 799999999999999999999999998877 566778888899999999999999999999999999887 777788999
Q ss_pred EEEEcchhHHHhcCchHHHHHHHHHhccCCCCCCCCCCcccccceeEEEEEEecchhhHHHHHhhcCCCeEEccCCCcCC
Q 010357 172 WIIFDEADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLP 251 (512)
Q Consensus 172 ~lV~DEah~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (512)
+|||||+++|.+.+|..+++.|..+++. ++|.+++|||++..++.+.+-.+..|+.+....-.
T Consensus 373 ~LV~DEadrmfdmGfe~qVrSI~~hirp---------------drQtllFsaTf~~kIe~lard~L~dpVrvVqg~vg-- 435 (731)
T KOG0339|consen 373 YLVLDEADRMFDMGFEPQVRSIKQHIRP---------------DRQTLLFSATFKKKIEKLARDILSDPVRVVQGEVG-- 435 (731)
T ss_pred EEEEechhhhhccccHHHHHHHHhhcCC---------------cceEEEeeccchHHHHHHHHHHhcCCeeEEEeehh--
Confidence 9999999999999999999999999987 99999999999999999999999888765433211
Q ss_pred CCccccccCCcccchhhhccCCCccccccccccccccceeeeEEEec-CCchHHHHHHHHHhhhccccCceEEEEeecch
Q 010357 252 EDKSHVRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVP-CGSRLAVLLSILKHLFDTEVSQKLVVFFSTCD 330 (512)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~k~~~l~~~l~~~~~~~~~~~~lvf~~~~~ 330 (512)
.-...+.+.+..++ ...|+..+...|... ...+++|+|+.-+.
T Consensus 436 ---------------------------------ean~dITQ~V~V~~s~~~Kl~wl~~~L~~f---~S~gkvlifVTKk~ 479 (731)
T KOG0339|consen 436 ---------------------------------EANEDITQTVSVCPSEEKKLNWLLRHLVEF---SSEGKVLIFVTKKA 479 (731)
T ss_pred ---------------------------------ccccchhheeeeccCcHHHHHHHHHHhhhh---ccCCcEEEEEeccC
Confidence 12345556665554 445666666555543 44579999999999
Q ss_pred hhhhHHHhhhhhcCCCCCCChhHHHhhhhccceeeecCCCCHHHHHHHHHhhhcCCCcEEEeecccccCCCCCCCcEEEE
Q 010357 331 AVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQ 410 (512)
Q Consensus 331 ~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~l~g~~~~~~r~~~~~~f~~~~~~vLvaT~~~~~Gldip~~~~VI~ 410 (512)
.++.++..|+-. ++.+..+||+|.+.+|.+++..|+++...|||+|+++.+|+|+|.+..||+
T Consensus 480 ~~e~i~a~Lklk-----------------~~~v~llhgdkdqa~rn~~ls~fKkk~~~VlvatDvaargldI~~ikTVvn 542 (731)
T KOG0339|consen 480 DAEEIAANLKLK-----------------GFNVSLLHGDKDQAERNEVLSKFKKKRKPVLVATDVAARGLDIPSIKTVVN 542 (731)
T ss_pred CHHHHHHHhccc-----------------cceeeeecCchhhHHHHHHHHHHhhcCCceEEEeeHhhcCCCccccceeec
Confidence 999999999877 889999999999999999999999999999999999999999999999999
Q ss_pred eCCCCChhHHHHhhhhcccCCCCccEEEecCccchhH----HHHHHHcCCCC
Q 010357 411 YDSAGEATEYVHRVGRTARLGERGDSLLFLQPVEMDY----LQDLEKHGVSL 458 (512)
Q Consensus 411 ~~~p~s~~~~~Q~~GRagR~g~~g~~~~~~~~~~~~~----~~~l~~~~~~~ 458 (512)
||.-.++..|.||+||+||.|.+|.++.++++.|..+ ++.|+..+.++
T Consensus 543 yD~ardIdththrigrtgRag~kGvayTlvTeKDa~fAG~LVnnLe~agQnV 594 (731)
T KOG0339|consen 543 YDFARDIDTHTHRIGRTGRAGEKGVAYTLVTEKDAEFAGHLVNNLEGAGQNV 594 (731)
T ss_pred ccccchhHHHHHHhhhcccccccceeeEEechhhHHHhhHHHHHHhhccccC
Confidence 9999999999999999999999999999999988655 44455544443
No 31
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.5e-51 Score=377.20 Aligned_cols=379 Identities=30% Similarity=0.445 Sum_probs=311.5
Q ss_pred CcccCCCCHHHHH----------HHHHhcCCCCCcHHHHHHHHHhhc---------CCCEEEEccCCChHhHHHHHHHHH
Q 010357 19 SFSSLGLHSTLCD----------QLRERLGFEAPTKVQAQAIPVILS---------GRHVLVNAATGTGKTVAYLAPIIN 79 (512)
Q Consensus 19 ~~~~~~l~~~~~~----------~l~~~~~~~~~~~~Q~~~~~~~~~---------~~~~lv~~pTGsGKT~~~~~~~~~ 79 (512)
.|+.+++++.+.. .+ ..+++.+.+|+|..+++.++. .+++.|.||||||||++|.+|+.+
T Consensus 128 ~~s~l~~se~k~~~d~lea~~~q~l-~k~~is~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iPIVQ 206 (620)
T KOG0350|consen 128 IFSVLGKSEMKNLEDTLEATIDQLL-VKMAISRLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIPIVQ 206 (620)
T ss_pred eeeccchhHHHHHHHHHHHHHHHHH-HHhhcccccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhHHHH
Confidence 4566666654443 47 457999999999999998852 479999999999999999999999
Q ss_pred HHhhcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHHhhcCCcceEEEeCCCchHHHHHHHcCC-----CCEEEeCChH
Q 010357 80 HLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKG-----ISILVATPGR 154 (512)
Q Consensus 80 ~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-----~~Iiv~Tp~~ 154 (512)
.+.++..+ ..+++|++|+++|+.|+++.|..+....+.. ++...|..+.+++...+.+. .||+|+||++
T Consensus 207 ~L~~R~v~-----~LRavVivPtr~L~~QV~~~f~~~~~~tgL~-V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTPGR 280 (620)
T KOG0350|consen 207 LLSSRPVK-----RLRAVVIVPTRELALQVYDTFKRLNSGTGLA-VCSLSGQNSLEDEARQLASDPPECRIDILVATPGR 280 (620)
T ss_pred HHccCCcc-----ceEEEEEeeHHHHHHHHHHHHHHhccCCceE-EEecccccchHHHHHHHhcCCCccccceEEcCchH
Confidence 99886543 4679999999999999999999999887755 67777777777777766554 3899999999
Q ss_pred HHHHHhhcCCCcCCceeEEEEcchhHHHhcCchHHHHHHHHHhccCCCCCC-------------C------CCCcccccc
Q 010357 155 LLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILGSRNIGSI-------------G------EGNEVSNVK 215 (512)
Q Consensus 155 l~~~l~~~~~~~~~~~~~lV~DEah~l~~~~~~~~~~~i~~~~~~~~~~~~-------------~------~~~~~~~~~ 215 (512)
|.+++...+.+.+++++++|+||||+|++..|..++..+...+........ + .......+.
T Consensus 281 LVDHl~~~k~f~Lk~LrfLVIDEADRll~qsfQ~Wl~~v~~~~~~~k~~~~~~nii~~~~~~~pt~~~e~~t~~~~~~~~ 360 (620)
T KOG0350|consen 281 LVDHLNNTKSFDLKHLRFLVIDEADRLLDQSFQEWLDTVMSLCKTMKRVACLDNIIRQRQAPQPTVLSELLTKLGKLYPP 360 (620)
T ss_pred HHHhccCCCCcchhhceEEEechHHHHHHHHHHHHHHHHHHHhCCchhhcChhhhhhhcccCCchhhHHHHhhcCCcCch
Confidence 999999999999999999999999999998888888888777664311110 0 000112334
Q ss_pred eeEEEEEEecchhhHHHHHhhcCCCeEEccCCCcCCCCccccccCCcccchhhhccCCCccccccccccccccceeeeEE
Q 010357 216 RQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLPEDKSHVRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYV 295 (512)
Q Consensus 216 ~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (512)
.+.+++|||+...-..+..+.+..|....+.... ...+.+|..+.++.+
T Consensus 361 l~kL~~satLsqdP~Kl~~l~l~~Prl~~v~~~~-------------------------------~~ryslp~~l~~~~v 409 (620)
T KOG0350|consen 361 LWKLVFSATLSQDPSKLKDLTLHIPRLFHVSKPL-------------------------------IGRYSLPSSLSHRLV 409 (620)
T ss_pred hHhhhcchhhhcChHHHhhhhcCCCceEEeeccc-------------------------------ceeeecChhhhhcee
Confidence 5688999999988888888888888766554321 223567888888888
Q ss_pred EecCCchHHHHHHHHHhhhccccCceEEEEeecchhhhhHHHhhh-hhcCCCCCCChhHHHhhhhccceeeecCCCCHHH
Q 010357 296 KVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLS-EFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQED 374 (512)
Q Consensus 296 ~~~~~~k~~~l~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~-~~~~~~~~~~~~~~~~~~~~~~v~~l~g~~~~~~ 374 (512)
.+....|...+...|.. ....++|+|+++...+.+++..|+ ....- ..++..+.|+++.+.
T Consensus 410 v~~~~~kpl~~~~lI~~----~k~~r~lcf~~S~~sa~Rl~~~L~v~~~~~--------------~~~~s~~t~~l~~k~ 471 (620)
T KOG0350|consen 410 VTEPKFKPLAVYALITS----NKLNRTLCFVNSVSSANRLAHVLKVEFCSD--------------NFKVSEFTGQLNGKR 471 (620)
T ss_pred ecccccchHhHHHHHHH----hhcceEEEEecchHHHHHHHHHHHHHhccc--------------cchhhhhhhhhhHHH
Confidence 88888888888888874 456799999999999999999997 33211 556777899999999
Q ss_pred HHHHHHhhhcCCCcEEEeecccccCCCCCCCcEEEEeCCCCChhHHHHhhhhcccCCCCccEEEecCccchhHHHHHHH
Q 010357 375 RRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRVGRTARLGERGDSLLFLQPVEMDYLQDLEK 453 (512)
Q Consensus 375 r~~~~~~f~~~~~~vLvaT~~~~~Gldip~~~~VI~~~~p~s~~~~~Q~~GRagR~g~~g~~~~~~~~~~~~~~~~l~~ 453 (512)
|.+.++.|.+|++++|||+|++++|+|+-+++.||+|++|.+...|+||+||++|+|+.|.|+.+.+..+...+..+.+
T Consensus 472 r~k~l~~f~~g~i~vLIcSD~laRGiDv~~v~~VINYd~P~~~ktyVHR~GRTARAgq~G~a~tll~~~~~r~F~klL~ 550 (620)
T KOG0350|consen 472 RYKMLEKFAKGDINVLICSDALARGIDVNDVDNVINYDPPASDKTYVHRAGRTARAGQDGYAITLLDKHEKRLFSKLLK 550 (620)
T ss_pred HHHHHHHHhcCCceEEEehhhhhcCCcccccceEeecCCCchhhHHHHhhcccccccCCceEEEeeccccchHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999988776666665
No 32
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.4e-51 Score=367.63 Aligned_cols=364 Identities=31% Similarity=0.520 Sum_probs=322.8
Q ss_pred CCcccCCCCHHHHHHHHHhcCCCCCcHHHHHHHHHhhcCCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEE
Q 010357 18 CSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFAL 97 (512)
Q Consensus 18 ~~~~~~~l~~~~~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~l 97 (512)
.+|++++|++++++.++ .+||+.|+.+|++|+..+..|.|++.++++|+|||.+|..++++.+... .....++
T Consensus 26 dsfddm~L~e~LLrgiy-~yGFekPSaIQqraI~p~i~G~dv~~qaqsgTgKt~af~i~iLq~iD~~------~ke~qal 98 (397)
T KOG0327|consen 26 DSFDDMNLKESLLRGIY-AYGFEKPSAIQQRAILPCIKGHDVIAQAQSGTGKTAAFLISILQQIDMS------VKETQAL 98 (397)
T ss_pred hhhhhcCCCHHHHhHHH-hhccCCchHHHhccccccccCCceeEeeeccccchhhhHHHHHhhcCcc------hHHHHHH
Confidence 39999999999999996 6799999999999999999999999999999999999999999887331 1246699
Q ss_pred EEcCcHHHHHHHHHHHHHHHhhcCCcceEEEeCCCchH-HHHHHHcCCCCEEEeCChHHHHHHhhcCCCcCCceeEEEEc
Q 010357 98 VLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRS-KEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFD 176 (512)
Q Consensus 98 il~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lV~D 176 (512)
+++|+++|+.|..+....++...+ ..+..+.||.... +.-......+.|+++||+++++.+... .+....++++|+|
T Consensus 99 ilaPtreLa~qi~~v~~~lg~~~~-~~v~~~igg~~~~~~~~~i~~~~~hivvGTpgrV~dml~~~-~l~~~~iKmfvlD 176 (397)
T KOG0327|consen 99 ILAPTRELAQQIQKVVRALGDHMD-VSVHACIGGTNVRREDQALLKDKPHIVVGTPGRVFDMLNRG-SLSTDGIKMFVLD 176 (397)
T ss_pred HhcchHHHHHHHHHHHHhhhcccc-eeeeeecCcccchhhhhhhhccCceeecCCchhHHHhhccc-cccccceeEEeec
Confidence 999999999999988888877654 3444556666655 444444556899999999999999874 7777789999999
Q ss_pred chhHHHhcCchHHHHHHHHHhccCCCCCCCCCCcccccceeEEEEEEecchhhHHHHHhhcCCCeEEccCCCcCCCCccc
Q 010357 177 EADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLPEDKSH 256 (512)
Q Consensus 177 Eah~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (512)
|++.++..+|..++..++.+++. ..|++++|||.+.++..+.+.++.+|..+.+....+.
T Consensus 177 EaDEmLs~gfkdqI~~if~~lp~---------------~vQv~l~SAT~p~~vl~vt~~f~~~pv~i~vkk~~lt----- 236 (397)
T KOG0327|consen 177 EADEMLSRGFKDQIYDIFQELPS---------------DVQVVLLSATMPSDVLEVTKKFMREPVRILVKKDELT----- 236 (397)
T ss_pred chHhhhccchHHHHHHHHHHcCc---------------chhheeecccCcHHHHHHHHHhccCceEEEecchhhh-----
Confidence 99999999999999999999988 8899999999999999999999999999988777521
Q ss_pred cccCCcccchhhhccCCCccccccccccccccceeeeEEEecCCchHHHHHHHHHhhhccccCceEEEEeecchhhhhHH
Q 010357 257 VRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHY 336 (512)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~ 336 (512)
...+.+.+..+..++|+..++.+... ....++|||+++.+..+.
T Consensus 237 ------------------------------l~gikq~~i~v~k~~k~~~l~dl~~~------~~q~~if~nt~r~v~~l~ 280 (397)
T KOG0327|consen 237 ------------------------------LEGIKQFYINVEKEEKLDTLCDLYRR------VTQAVIFCNTRRKVDNLT 280 (397)
T ss_pred ------------------------------hhheeeeeeeccccccccHHHHHHHh------hhcceEEecchhhHHHHH
Confidence 45567788888888888888887763 368999999999999999
Q ss_pred HhhhhhcCCCCCCChhHHHhhhhccceeeecCCCCHHHHHHHHHhhhcCCCcEEEeecccccCCCCCCCcEEEEeCCCCC
Q 010357 337 SLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGE 416 (512)
Q Consensus 337 ~~l~~~~~~~~~~~~~~~~~~~~~~~v~~l~g~~~~~~r~~~~~~f~~~~~~vLvaT~~~~~Gldip~~~~VI~~~~p~s 416 (512)
..|.+. +..+..+||+|.+.+|..+++.|+.|..+|||.|+.+++|+|+..++.||+|+.|..
T Consensus 281 ~~L~~~-----------------~~~~s~~~~d~~q~~R~~~~~ef~~gssrvlIttdl~argidv~~~slvinydlP~~ 343 (397)
T KOG0327|consen 281 DKLRAH-----------------GFTVSAIHGDMEQNERDTLMREFRSGSSRVLITTDLLARGIDVQQVSLVVNYDLPAR 343 (397)
T ss_pred HHHhhC-----------------CceEEEeecccchhhhhHHHHHhhcCCceEEeeccccccccchhhcceeeeeccccc
Confidence 999877 889999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHhhhhcccCCCCccEEEecCccchhHHHHHHHc-CCCCCccCh
Q 010357 417 ATEYVHRVGRTARLGERGDSLLFLQPVEMDYLQDLEKH-GVSLTEYPL 463 (512)
Q Consensus 417 ~~~~~Q~~GRagR~g~~g~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~ 463 (512)
..+|+||+||+||.|.+|.++.++...+...++.+++. +.+++|+|.
T Consensus 344 ~~~yihR~gr~gr~grkg~~in~v~~~d~~~lk~ie~~y~~~i~e~p~ 391 (397)
T KOG0327|consen 344 KENYIHRIGRAGRFGRKGVAINFVTEEDVRDLKDIEKFYNTPIEELPS 391 (397)
T ss_pred hhhhhhhcccccccCCCceeeeeehHhhHHHHHhHHHhcCCcceeccc
Confidence 99999999999999999999999999999999999986 788887764
No 33
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=100.00 E-value=2.3e-49 Score=406.89 Aligned_cols=343 Identities=20% Similarity=0.259 Sum_probs=259.9
Q ss_pred Ccc--cCCCCHHHHHHHHHhcCCCCCcHHHHHHHHHhhcCCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceE
Q 010357 19 SFS--SLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFA 96 (512)
Q Consensus 19 ~~~--~~~l~~~~~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (512)
.|. .++....+...++..||+..|||+|+++++.++.|+++++++|||+|||++|++|++.. +..+
T Consensus 436 ~W~~~~fpw~~~L~~~lk~~FG~~sFRp~Q~eaI~aiL~GrDVLVimPTGSGKSLcYQLPAL~~------------~GiT 503 (1195)
T PLN03137 436 KWSSRNFPWTKKLEVNNKKVFGNHSFRPNQREIINATMSGYDVFVLMPTGGGKSLTYQLPALIC------------PGIT 503 (1195)
T ss_pred cccccCCCchHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHHHHHHHHHHHc------------CCcE
Confidence 455 46777889899999999999999999999999999999999999999999999999863 4569
Q ss_pred EEEcCcHHHHHHHHHHHHHHHhhcCCcceEEEeCCCchHHHHHHHc------CCCCEEEeCChHHHH---HHhhcCCC-c
Q 010357 97 LVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLR------KGISILVATPGRLLD---HLKHTSSF-L 166 (512)
Q Consensus 97 lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~------~~~~Iiv~Tp~~l~~---~l~~~~~~-~ 166 (512)
|||+|+++|+.++...+... + +....+.++.........+. ..++|+++|||++.. ++.....+ .
T Consensus 504 LVISPLiSLmqDQV~~L~~~----G-I~Aa~L~s~~s~~eq~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll~~L~~L~~ 578 (1195)
T PLN03137 504 LVISPLVSLIQDQIMNLLQA----N-IPAASLSAGMEWAEQLEILQELSSEYSKYKLLYVTPEKVAKSDSLLRHLENLNS 578 (1195)
T ss_pred EEEeCHHHHHHHHHHHHHhC----C-CeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEChHHhhcchHHHHHHHhhhh
Confidence 99999999998776666543 2 44556667666555443332 458999999999852 12211111 1
Q ss_pred CCceeEEEEcchhHHHhcC--chHHHHHH---HHHhccCCCCCCCCCCcccccceeEEEEEEecchhhHHHHHhhc--CC
Q 010357 167 HTNLRWIIFDEADRILELG--FGKEIEEI---LDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISL--ET 239 (512)
Q Consensus 167 ~~~~~~lV~DEah~l~~~~--~~~~~~~i---~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~--~~ 239 (512)
...+.+|||||||++.+|+ |...+..+ ...++ ..+++++|||.+..+.......+ .+
T Consensus 579 ~~~LslIVIDEAHcVSqWGhDFRpdYr~L~~Lr~~fp----------------~vPilALTATAT~~V~eDI~~~L~l~~ 642 (1195)
T PLN03137 579 RGLLARFVIDEAHCVSQWGHDFRPDYQGLGILKQKFP----------------NIPVLALTATATASVKEDVVQALGLVN 642 (1195)
T ss_pred ccccceeccCcchhhhhcccchHHHHHHHHHHHHhCC----------------CCCeEEEEecCCHHHHHHHHHHcCCCC
Confidence 2358899999999999987 55555543 22222 56789999999987665433322 22
Q ss_pred CeEEccCCCcCCCCccccccCCcccchhhhccCCCccccccccccccccceeeeEEEecCCch-HHHHHHHHHhhhcccc
Q 010357 240 PVLIGLDEKKLPEDKSHVRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCGSR-LAVLLSILKHLFDTEV 318 (512)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k-~~~l~~~l~~~~~~~~ 318 (512)
+..+..... ..++ .+.......+ ...+..++.. ...
T Consensus 643 ~~vfr~Sf~--------------------------------------RpNL--~y~Vv~k~kk~le~L~~~I~~---~~~ 679 (1195)
T PLN03137 643 CVVFRQSFN--------------------------------------RPNL--WYSVVPKTKKCLEDIDKFIKE---NHF 679 (1195)
T ss_pred cEEeecccC--------------------------------------ccce--EEEEeccchhHHHHHHHHHHh---ccc
Confidence 222111000 0111 1222222221 2344444433 223
Q ss_pred CceEEEEeecchhhhhHHHhhhhhcCCCCCCChhHHHhhhhccceeeecCCCCHHHHHHHHHhhhcCCCcEEEeeccccc
Q 010357 319 SQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAAR 398 (512)
Q Consensus 319 ~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~l~g~~~~~~r~~~~~~f~~~~~~vLvaT~~~~~ 398 (512)
+..+||||.+++.++.++..|... ++.+..|||+|+..+|..++++|.+|+++|||||+++++
T Consensus 680 ~esgIIYC~SRke~E~LAe~L~~~-----------------Gika~~YHAGLs~eeR~~vqe~F~~Gei~VLVATdAFGM 742 (1195)
T PLN03137 680 DECGIIYCLSRMDCEKVAERLQEF-----------------GHKAAFYHGSMDPAQRAFVQKQWSKDEINIICATVAFGM 742 (1195)
T ss_pred CCCceeEeCchhHHHHHHHHHHHC-----------------CCCeeeeeCCCCHHHHHHHHHHHhcCCCcEEEEechhhc
Confidence 568999999999999999999887 889999999999999999999999999999999999999
Q ss_pred CCCCCCCcEEEEeCCCCChhHHHHhhhhcccCCCCccEEEecCccchhHHHHHHHc
Q 010357 399 GLDFPKVKCIIQYDSAGEATEYVHRVGRTARLGERGDSLLFLQPVEMDYLQDLEKH 454 (512)
Q Consensus 399 Gldip~~~~VI~~~~p~s~~~~~Q~~GRagR~g~~g~~~~~~~~~~~~~~~~l~~~ 454 (512)
|||+|++++||||++|.+++.|+||+|||||.|.+|.|++|++..|...++.+...
T Consensus 743 GIDkPDVR~VIHydlPkSiEsYyQriGRAGRDG~~g~cILlys~~D~~~~~~lI~~ 798 (1195)
T PLN03137 743 GINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDYIRVKHMISQ 798 (1195)
T ss_pred CCCccCCcEEEEcCCCCCHHHHHhhhcccCCCCCCceEEEEecHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999888777777654
No 34
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.2e-50 Score=402.80 Aligned_cols=366 Identities=35% Similarity=0.569 Sum_probs=326.3
Q ss_pred CccCCcccCCCCHHHHHHHHHhcCCCCCcHHHHHHHHHhhcCCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCc
Q 010357 15 FASCSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGT 94 (512)
Q Consensus 15 ~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~ 94 (512)
.+.++|+..|++..++..+ +++||..|+++|.+|||.|+.|+++|.+|-||||||++|++|++.+... .+....+.|+
T Consensus 362 kpv~sW~q~gl~~~il~tl-kkl~y~k~~~IQ~qAiP~ImsGrdvIgvakTgSGKT~af~LPmirhi~d-Qr~~~~gdGP 439 (997)
T KOG0334|consen 362 KPVTSWTQCGLSSKILETL-KKLGYEKPTPIQAQAIPAIMSGRDVIGVAKTGSGKTLAFLLPMIRHIKD-QRPLEEGDGP 439 (997)
T ss_pred cccchHhhCCchHHHHHHH-HHhcCCCCcchhhhhcchhccCcceEEeeccCCccchhhhcchhhhhhc-CCChhhCCCc
Confidence 4567999999999999999 6789999999999999999999999999999999999999999955443 4455556799
Q ss_pred eEEEEcCcHHHHHHHHHHHHHHHhhcCCcceEEEeCCCchHHHHHHHcCCCCEEEeCChHHHHHHhh--cCCCcCCceeE
Q 010357 95 FALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKH--TSSFLHTNLRW 172 (512)
Q Consensus 95 ~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~--~~~~~~~~~~~ 172 (512)
.++|++||++|+.|+.+++..++...+ +.+..++||.....+++.++.++.|+|+||+++.+.+-. .+...+..+.+
T Consensus 440 i~li~aPtrela~QI~r~~~kf~k~l~-ir~v~vygg~~~~~qiaelkRg~eIvV~tpGRmiD~l~~n~grvtnlrR~t~ 518 (997)
T KOG0334|consen 440 IALILAPTRELAMQIHREVRKFLKLLG-IRVVCVYGGSGISQQIAELKRGAEIVVCTPGRMIDILCANSGRVTNLRRVTY 518 (997)
T ss_pred eEEEEcCCHHHHHHHHHHHHHHHhhcC-ceEEEecCCccHHHHHHHHhcCCceEEeccchhhhhHhhcCCccccccccce
Confidence 999999999999999999999998855 666789999999999999999999999999999987754 23345556679
Q ss_pred EEEcchhHHHhcCchHHHHHHHHHhccCCCCCCCCCCcccccceeEEEEEEecchhhHHHHHhhcCCCeEEccCCCcCCC
Q 010357 173 IIFDEADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLPE 252 (512)
Q Consensus 173 lV~DEah~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (512)
+|+||||++.+.+|.+++..|+..++. .+|.+++|||++..+..+....+..|..+.+....
T Consensus 519 lv~deaDrmfdmgfePq~~~Ii~nlrp---------------drQtvlfSatfpr~m~~la~~vl~~Pveiiv~~~s--- 580 (997)
T KOG0334|consen 519 LVLDEADRMFDMGFEPQITRILQNLRP---------------DRQTVLFSATFPRSMEALARKVLKKPVEIIVGGRS--- 580 (997)
T ss_pred eeechhhhhheeccCcccchHHhhcch---------------hhhhhhhhhhhhHHHHHHHHHhhcCCeeEEEccce---
Confidence 999999999999999999999999976 89999999999999999999998888877666553
Q ss_pred CccccccCCcccchhhhccCCCccccccccccccccceeeeEEEec-CCchHHHHHHHHHhhhccccCceEEEEeecchh
Q 010357 253 DKSHVRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVP-CGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDA 331 (512)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~k~~~l~~~l~~~~~~~~~~~~lvf~~~~~~ 331 (512)
.....+.+.+..+. ..+|...|.++|.... ...++||||.+...
T Consensus 581 --------------------------------vV~k~V~q~v~V~~~e~eKf~kL~eLl~e~~---e~~~tiiFv~~qe~ 625 (997)
T KOG0334|consen 581 --------------------------------VVCKEVTQVVRVCAIENEKFLKLLELLGERY---EDGKTIIFVDKQEK 625 (997)
T ss_pred --------------------------------eEeccceEEEEEecCchHHHHHHHHHHHHHh---hcCCEEEEEcCchH
Confidence 23456677777777 8899999999999864 37899999999999
Q ss_pred hhhHHHhhhhhcCCCCCCChhHHHhhhhccceeeecCCCCHHHHHHHHHhhhcCCCcEEEeecccccCCCCCCCcEEEEe
Q 010357 332 VDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQY 411 (512)
Q Consensus 332 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~l~g~~~~~~r~~~~~~f~~~~~~vLvaT~~~~~Gldip~~~~VI~~ 411 (512)
|..+.+.|.+. ++.+..+||+.++.+|..+++.|+++.+.+||||+.+++|+|+..+.+||+|
T Consensus 626 ~d~l~~~L~~a-----------------g~~~~slHGgv~q~dR~sti~dfK~~~~~LLvaTsvvarGLdv~~l~Lvvny 688 (997)
T KOG0334|consen 626 ADALLRDLQKA-----------------GYNCDSLHGGVDQHDRSSTIEDFKNGVVNLLVATSVVARGLDVKELILVVNY 688 (997)
T ss_pred HHHHHHHHHhc-----------------CcchhhhcCCCchHHHHhHHHHHhccCceEEEehhhhhcccccccceEEEEc
Confidence 99999999977 7788889999999999999999999999999999999999999999999999
Q ss_pred CCCCChhHHHHhhhhcccCCCCccEEEecCccchhHHHHHHH
Q 010357 412 DSAGEATEYVHRVGRTARLGERGDSLLFLQPVEMDYLQDLEK 453 (512)
Q Consensus 412 ~~p~s~~~~~Q~~GRagR~g~~g~~~~~~~~~~~~~~~~l~~ 453 (512)
+.|...++|+||.||+||.|+.|.+++|+++++..+...|.+
T Consensus 689 d~pnh~edyvhR~gRTgragrkg~AvtFi~p~q~~~a~dl~~ 730 (997)
T KOG0334|consen 689 DFPNHYEDYVHRVGRTGRAGRKGAAVTFITPDQLKYAGDLCK 730 (997)
T ss_pred ccchhHHHHHHHhcccccCCccceeEEEeChHHhhhHHHHHH
Confidence 999999999999999999999999999999977666555554
No 35
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=2.5e-49 Score=395.03 Aligned_cols=330 Identities=19% Similarity=0.284 Sum_probs=247.9
Q ss_pred HHHhcCCCCCcHHHHHHHHHhhcCCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcHHHHHHHHHH
Q 010357 33 LRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEI 112 (512)
Q Consensus 33 l~~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~ 112 (512)
|++.|||..|||+|+++++.+++|+++++++|||+|||++|++|++.. +..+||++|+++|+.|+.+.
T Consensus 3 l~~~~g~~~~r~~Q~~ai~~~l~g~dvlv~apTGsGKTl~y~lp~l~~------------~~~~lVi~P~~~L~~dq~~~ 70 (470)
T TIGR00614 3 LKTVFGLSSFRPVQLEVINAVLLGRDCFVVMPTGGGKSLCYQLPALCS------------DGITLVISPLISLMEDQVLQ 70 (470)
T ss_pred hHhhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHhHHHHHHHHHc------------CCcEEEEecHHHHHHHHHHH
Confidence 677899999999999999999999999999999999999999998753 45699999999999999988
Q ss_pred HHHHHhhcCCcceEEEeCCCchHHH---HHH-HcCCCCEEEeCChHHHHHHhhcCCC-cCCceeEEEEcchhHHHhcC--
Q 010357 113 LHKLLHRFHWIVPGYVMGGENRSKE---KAR-LRKGISILVATPGRLLDHLKHTSSF-LHTNLRWIIFDEADRILELG-- 185 (512)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~g~~~~~~---~~~-~~~~~~Iiv~Tp~~l~~~l~~~~~~-~~~~~~~lV~DEah~l~~~~-- 185 (512)
+... + .....+.++...... ... ....++|+++||+++.........+ ...++++||+||||++.+++
T Consensus 71 l~~~----g-i~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~iViDEaH~i~~~g~~ 145 (470)
T TIGR00614 71 LKAS----G-IPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLEERKGITLIAVDEAHCISQWGHD 145 (470)
T ss_pred HHHc----C-CcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHHhcCCcCEEEEeCCcccCccccc
Confidence 8764 2 233444444433322 122 2345899999999975422111111 34588999999999998876
Q ss_pred chHHHHHH---HHHhccCCCCCCCCCCcccccceeEEEEEEecchhhHHHHHhh--cCCCeEEccCCCcCCCCccccccC
Q 010357 186 FGKEIEEI---LDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKIS--LETPVLIGLDEKKLPEDKSHVRFG 260 (512)
Q Consensus 186 ~~~~~~~i---~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 260 (512)
|...+..+ ...++ ..+++++|||+++......... +..+..+......
T Consensus 146 fr~~~~~l~~l~~~~~----------------~~~~l~lTAT~~~~~~~di~~~l~l~~~~~~~~s~~r----------- 198 (470)
T TIGR00614 146 FRPDYKALGSLKQKFP----------------NVPIMALTATASPSVREDILRQLNLKNPQIFCTSFDR----------- 198 (470)
T ss_pred cHHHHHHHHHHHHHcC----------------CCceEEEecCCCHHHHHHHHHHcCCCCCcEEeCCCCC-----------
Confidence 44444443 22222 6789999999998765433322 2333332211110
Q ss_pred CcccchhhhccCCCccccccccccccccceeeeEEEecCCchHHHHHHHHHhhhccccCceEEEEeecchhhhhHHHhhh
Q 010357 261 SLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLS 340 (512)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~ 340 (512)
.++. .............+...+.. ..++..+||||++++.++.++..|.
T Consensus 199 ---------------------------~nl~-~~v~~~~~~~~~~l~~~l~~---~~~~~~~IIF~~s~~~~e~la~~L~ 247 (470)
T TIGR00614 199 ---------------------------PNLY-YEVRRKTPKILEDLLRFIRK---EFKGKSGIIYCPSRKKSEQVTASLQ 247 (470)
T ss_pred ---------------------------CCcE-EEEEeCCccHHHHHHHHHHH---hcCCCceEEEECcHHHHHHHHHHHH
Confidence 0110 11111111334445555543 2345677999999999999999998
Q ss_pred hhcCCCCCCChhHHHhhhhccceeeecCCCCHHHHHHHHHhhhcCCCcEEEeecccccCCCCCCCcEEEEeCCCCChhHH
Q 010357 341 EFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEY 420 (512)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~v~~l~g~~~~~~r~~~~~~f~~~~~~vLvaT~~~~~Gldip~~~~VI~~~~p~s~~~~ 420 (512)
+. ++.+..+||+|+..+|..+++.|++|+.+|||||+++++|+|+|++++||++++|.+...|
T Consensus 248 ~~-----------------g~~~~~~H~~l~~~eR~~i~~~F~~g~~~vLVaT~~~~~GID~p~V~~VI~~~~P~s~~~y 310 (470)
T TIGR00614 248 NL-----------------GIAAGAYHAGLEISARDDVHHKFQRDEIQVVVATVAFGMGINKPDVRFVIHYSLPKSMESY 310 (470)
T ss_pred hc-----------------CCCeeEeeCCCCHHHHHHHHHHHHcCCCcEEEEechhhccCCcccceEEEEeCCCCCHHHH
Confidence 87 7889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhcccCCCCccEEEecCccchhHHHHHHHc
Q 010357 421 VHRVGRTARLGERGDSLLFLQPVEMDYLQDLEKH 454 (512)
Q Consensus 421 ~Q~~GRagR~g~~g~~~~~~~~~~~~~~~~l~~~ 454 (512)
+||+|||||.|.+|.|++|+++.|...++.+...
T Consensus 311 ~Qr~GRaGR~G~~~~~~~~~~~~d~~~~~~~~~~ 344 (470)
T TIGR00614 311 YQESGRAGRDGLPSECHLFYAPADINRLRRLLME 344 (470)
T ss_pred HhhhcCcCCCCCCceEEEEechhHHHHHHHHHhc
Confidence 9999999999999999999999998877776553
No 36
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=8.4e-50 Score=359.78 Aligned_cols=360 Identities=37% Similarity=0.591 Sum_probs=326.9
Q ss_pred cCCcccCCCCHHHHHHHHHhcCCCCCcHHHHHHHHHhhcCCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceE
Q 010357 17 SCSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFA 96 (512)
Q Consensus 17 ~~~~~~~~l~~~~~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (512)
..+|+++||+..+.+++.++ ||..|+|+|++.+|.++++++++-.+-||||||.+|++||++.+.+.. ..|.++
T Consensus 20 ~g~fqsmgL~~~v~raI~kk-g~~~ptpiqRKTipliLe~~dvv~martgsgktaaf~ipm~e~Lk~~s-----~~g~Ra 93 (529)
T KOG0337|consen 20 SGGFQSMGLDYKVLRAIHKK-GFNTPTPIQRKTIPLILEGRDVVGMARTGSGKTAAFLIPMIEKLKSHS-----QTGLRA 93 (529)
T ss_pred CCCccccCCCHHHHHHHHHh-hcCCCCchhcccccceeeccccceeeecCCcchhhHHHHHHHHHhhcc-----ccccce
Confidence 57999999999999999765 999999999999999999999999999999999999999999998754 237789
Q ss_pred EEEcCcHHHHHHHHHHHHHHHhhcCCcceEEEeCCCchHHHHHHHcCCCCEEEeCChHHHHHHhhcCCCcCCceeEEEEc
Q 010357 97 LVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFD 176 (512)
Q Consensus 97 lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lV~D 176 (512)
++++||++|+.|..+..+.++...+ ......+||+...+++..+..++|||++||+++...... -.+.++.+.+||||
T Consensus 94 lilsptreLa~qtlkvvkdlgrgt~-lr~s~~~ggD~~eeqf~~l~~npDii~ATpgr~~h~~ve-m~l~l~sveyVVfd 171 (529)
T KOG0337|consen 94 LILSPTRELALQTLKVVKDLGRGTK-LRQSLLVGGDSIEEQFILLNENPDIIIATPGRLLHLGVE-MTLTLSSVEYVVFD 171 (529)
T ss_pred eeccCcHHHHHHHHHHHHHhccccc-hhhhhhcccchHHHHHHHhccCCCEEEecCceeeeeehh-eeccccceeeeeeh
Confidence 9999999999999999999987655 555678899999999999999999999999999876655 33677899999999
Q ss_pred chhHHHhcCchHHHHHHHHHhccCCCCCCCCCCcccccceeEEEEEEecchhhHHHHHhhcCCCeEEccCCCcCCCCccc
Q 010357 177 EADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLPEDKSH 256 (512)
Q Consensus 177 Eah~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (512)
|++++.+.+|..++..++.+++. ..|.++||||+|...-.+.+..+.+|..+.++-+.
T Consensus 172 Eadrlfemgfqeql~e~l~rl~~---------------~~QTllfSatlp~~lv~fakaGl~~p~lVRldvet------- 229 (529)
T KOG0337|consen 172 EADRLFEMGFQEQLHEILSRLPE---------------SRQTLLFSATLPRDLVDFAKAGLVPPVLVRLDVET------- 229 (529)
T ss_pred hhhHHHhhhhHHHHHHHHHhCCC---------------cceEEEEeccCchhhHHHHHccCCCCceEEeehhh-------
Confidence 99999999999999999999987 77999999999999999999999999887765543
Q ss_pred cccCCcccchhhhccCCCccccccccccccccceeeeEEEecCCchHHHHHHHHHhhhccccCceEEEEeecchhhhhHH
Q 010357 257 VRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHY 336 (512)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~ 336 (512)
.+.+.+...+..+...+|..+|+.++.... .+..++||++++.+++.+.
T Consensus 230 ----------------------------kise~lk~~f~~~~~a~K~aaLl~il~~~~---~~~~t~vf~~tk~hve~~~ 278 (529)
T KOG0337|consen 230 ----------------------------KISELLKVRFFRVRKAEKEAALLSILGGRI---KDKQTIVFVATKHHVEYVR 278 (529)
T ss_pred ----------------------------hcchhhhhheeeeccHHHHHHHHHHHhccc---cccceeEEecccchHHHHH
Confidence 355677788889999999999999988753 2568999999999999999
Q ss_pred HhhhhhcCCCCCCChhHHHhhhhccceeeecCCCCHHHHHHHHHhhhcCCCcEEEeecccccCCCCCCCcEEEEeCCCCC
Q 010357 337 SLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGE 416 (512)
Q Consensus 337 ~~l~~~~~~~~~~~~~~~~~~~~~~~v~~l~g~~~~~~r~~~~~~f~~~~~~vLvaT~~~~~Gldip~~~~VI~~~~p~s 416 (512)
..+... ++.+..+.|.|++.-|..-.+.|+.++..+||.|+++++|+|+|..+.||+|+.|..
T Consensus 279 ~ll~~~-----------------g~~~s~iysslD~~aRk~~~~~F~~~k~~~lvvTdvaaRG~diplldnvinyd~p~~ 341 (529)
T KOG0337|consen 279 GLLRDF-----------------GGEGSDIYSSLDQEARKINGRDFRGRKTSILVVTDVAARGLDIPLLDNVINYDFPPD 341 (529)
T ss_pred HHHHhc-----------------CCCccccccccChHhhhhccccccCCccceEEEehhhhccCCCccccccccccCCCC
Confidence 999998 778888999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHhhhhcccCCCCccEEEecCccchhHHHHHHHc
Q 010357 417 ATEYVHRVGRTARLGERGDSLLFLQPVEMDYLQDLEKH 454 (512)
Q Consensus 417 ~~~~~Q~~GRagR~g~~g~~~~~~~~~~~~~~~~l~~~ 454 (512)
..-|.||+||+.|+|+.|..|.++.+.+..++-.|.-.
T Consensus 342 ~klFvhRVgr~aragrtg~aYs~V~~~~~~yl~DL~lf 379 (529)
T KOG0337|consen 342 DKLFVHRVGRVARAGRTGRAYSLVASTDDPYLLDLQLF 379 (529)
T ss_pred CceEEEEecchhhccccceEEEEEecccchhhhhhhhh
Confidence 99999999999999999999999999998888887764
No 37
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=100.00 E-value=1.9e-47 Score=391.01 Aligned_cols=337 Identities=21% Similarity=0.321 Sum_probs=254.6
Q ss_pred CCCCHHHHHHHHHhcCCCCCcHHHHHHHHHhhcCCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCc
Q 010357 23 LGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPT 102 (512)
Q Consensus 23 ~~l~~~~~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt 102 (512)
++..+...+.|++.|||..|||+|+++++.+++|+++++++|||+|||++|++|++.. ...++|++|+
T Consensus 7 ~~~~~~~~~~l~~~fG~~~~r~~Q~~ai~~il~g~dvlv~apTGsGKTl~y~lpal~~------------~g~tlVisPl 74 (607)
T PRK11057 7 LNLESLAKQVLQETFGYQQFRPGQQEIIDAVLSGRDCLVVMPTGGGKSLCYQIPALVL------------DGLTLVVSPL 74 (607)
T ss_pred CCchhHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHc------------CCCEEEEecH
Confidence 4556667788888899999999999999999999999999999999999999998853 3459999999
Q ss_pred HHHHHHHHHHHHHHHhhcCCcceEEEeCCCchHHHHH---HH-cCCCCEEEeCChHHHHHHhhcCCCcCCceeEEEEcch
Q 010357 103 RELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKA---RL-RKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEA 178 (512)
Q Consensus 103 ~~L~~q~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~-~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lV~DEa 178 (512)
++|+.|+.+.+... + .......++........ .+ ....+++++||+++...... ..+...++++||+|||
T Consensus 75 ~sL~~dqv~~l~~~----g-i~~~~~~s~~~~~~~~~~~~~~~~g~~~il~~tPe~l~~~~~~-~~l~~~~l~~iVIDEa 148 (607)
T PRK11057 75 ISLMKDQVDQLLAN----G-VAAACLNSTQTREQQLEVMAGCRTGQIKLLYIAPERLMMDNFL-EHLAHWNPALLAVDEA 148 (607)
T ss_pred HHHHHHHHHHHHHc----C-CcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEEChHHhcChHHH-HHHhhCCCCEEEEeCc
Confidence 99999999888765 2 23344444444333222 22 23478999999998632111 1122347899999999
Q ss_pred hHHHhcC--chHHHHHH---HHHhccCCCCCCCCCCcccccceeEEEEEEecchhhHHHH-H-hhcCCCeEEccCCCcCC
Q 010357 179 DRILELG--FGKEIEEI---LDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLA-K-ISLETPVLIGLDEKKLP 251 (512)
Q Consensus 179 h~l~~~~--~~~~~~~i---~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~-~-~~~~~~~~~~~~~~~~~ 251 (512)
|++.+++ |...+..+ ...++ ..+++++|||+++...... . ..+.++.........
T Consensus 149 H~i~~~G~~fr~~y~~L~~l~~~~p----------------~~~~v~lTAT~~~~~~~di~~~l~l~~~~~~~~~~~r-- 210 (607)
T PRK11057 149 HCISQWGHDFRPEYAALGQLRQRFP----------------TLPFMALTATADDTTRQDIVRLLGLNDPLIQISSFDR-- 210 (607)
T ss_pred cccccccCcccHHHHHHHHHHHhCC----------------CCcEEEEecCCChhHHHHHHHHhCCCCeEEEECCCCC--
Confidence 9999876 44444333 33332 6789999999987654422 2 223333322111100
Q ss_pred CCccccccCCcccchhhhccCCCccccccccccccccceeeeEEEecCCchHHHHHHHHHhhhccccCceEEEEeecchh
Q 010357 252 EDKSHVRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDA 331 (512)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~lvf~~~~~~ 331 (512)
.++ .+.......+...+..++. ...+.++||||++++.
T Consensus 211 ------------------------------------~nl--~~~v~~~~~~~~~l~~~l~----~~~~~~~IIFc~tr~~ 248 (607)
T PRK11057 211 ------------------------------------PNI--RYTLVEKFKPLDQLMRYVQ----EQRGKSGIIYCNSRAK 248 (607)
T ss_pred ------------------------------------Ccc--eeeeeeccchHHHHHHHHH----hcCCCCEEEEECcHHH
Confidence 000 1111222233444555444 3456899999999999
Q ss_pred hhhHHHhhhhhcCCCCCCChhHHHhhhhccceeeecCCCCHHHHHHHHHhhhcCCCcEEEeecccccCCCCCCCcEEEEe
Q 010357 332 VDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQY 411 (512)
Q Consensus 332 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~l~g~~~~~~r~~~~~~f~~~~~~vLvaT~~~~~Gldip~~~~VI~~ 411 (512)
++.++..|.+. ++.+..+||+|+.++|..+++.|++|+.+|||||+++++|+|+|++++||+|
T Consensus 249 ~e~la~~L~~~-----------------g~~v~~~Ha~l~~~~R~~i~~~F~~g~~~VLVaT~a~~~GIDip~V~~VI~~ 311 (607)
T PRK11057 249 VEDTAARLQSR-----------------GISAAAYHAGLDNDVRADVQEAFQRDDLQIVVATVAFGMGINKPNVRFVVHF 311 (607)
T ss_pred HHHHHHHHHhC-----------------CCCEEEecCCCCHHHHHHHHHHHHCCCCCEEEEechhhccCCCCCcCEEEEe
Confidence 99999999887 7889999999999999999999999999999999999999999999999999
Q ss_pred CCCCChhHHHHhhhhcccCCCCccEEEecCccchhHHHHHHHc
Q 010357 412 DSAGEATEYVHRVGRTARLGERGDSLLFLQPVEMDYLQDLEKH 454 (512)
Q Consensus 412 ~~p~s~~~~~Q~~GRagR~g~~g~~~~~~~~~~~~~~~~l~~~ 454 (512)
+.|.|..+|+||+|||||.|.+|.|++|+++.|...++.+...
T Consensus 312 d~P~s~~~y~Qr~GRaGR~G~~~~~ill~~~~d~~~~~~~~~~ 354 (607)
T PRK11057 312 DIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRCLEE 354 (607)
T ss_pred CCCCCHHHHHHHhhhccCCCCCceEEEEeCHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999998777766553
No 38
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=100.00 E-value=1.3e-46 Score=386.62 Aligned_cols=332 Identities=20% Similarity=0.304 Sum_probs=253.0
Q ss_pred HHHHHhcCCCCCcHHHHHHHHHhhcCCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcHHHHHHHH
Q 010357 31 DQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVY 110 (512)
Q Consensus 31 ~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~ 110 (512)
+.|++.|||.+||++|+++++.+++|+++++++|||+|||++|++|++.. +..++|++|+++|+.|+.
T Consensus 3 ~~l~~~fg~~~fr~~Q~~~i~~il~g~dvlv~~PTG~GKTl~y~lpal~~------------~g~~lVisPl~sL~~dq~ 70 (591)
T TIGR01389 3 QVLKRTFGYDDFRPGQEEIISHVLDGRDVLVVMPTGGGKSLCYQVPALLL------------KGLTVVISPLISLMKDQV 70 (591)
T ss_pred HHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHhHHHHHHHHHc------------CCcEEEEcCCHHHHHHHH
Confidence 46778899999999999999999999999999999999999999998742 445899999999999999
Q ss_pred HHHHHHHhhcCCcceEEEeCCCchHHHHH----HHcCCCCEEEeCChHHHHHHhhcCCCcCCceeEEEEcchhHHHhcC-
Q 010357 111 EILHKLLHRFHWIVPGYVMGGENRSKEKA----RLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELG- 185 (512)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~----~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lV~DEah~l~~~~- 185 (512)
+.+..+ + ..+..+.++........ ...+..+|+++||+++...... ..+...++++|||||||++.+++
T Consensus 71 ~~l~~~----g-i~~~~~~s~~~~~~~~~~~~~l~~~~~~il~~tpe~l~~~~~~-~~l~~~~l~~iViDEaH~i~~~g~ 144 (591)
T TIGR01389 71 DQLRAA----G-VAAAYLNSTLSAKEQQDIEKALVNGELKLLYVAPERLEQDYFL-NMLQRIPIALVAVDEAHCVSQWGH 144 (591)
T ss_pred HHHHHc----C-CcEEEEeCCCCHHHHHHHHHHHhCCCCCEEEEChhHhcChHHH-HHHhcCCCCEEEEeCCcccccccC
Confidence 988875 2 33445555544443222 2335589999999998643222 22234578999999999998876
Q ss_pred -chHHHHHHHHHhccCCCCCCCCCCcccccceeEEEEEEecchhhHHHHHhhc--CCCeEEccCCCcCCCCccccccCCc
Q 010357 186 -FGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISL--ETPVLIGLDEKKLPEDKSHVRFGSL 262 (512)
Q Consensus 186 -~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (512)
|...+..+........ ..+++++|||.+..........+ ..+..+.....
T Consensus 145 ~frp~y~~l~~l~~~~~-------------~~~vi~lTAT~~~~~~~~i~~~l~~~~~~~~~~~~~-------------- 197 (591)
T TIGR01389 145 DFRPEYQRLGSLAERFP-------------QVPRIALTATADAETRQDIRELLRLADANEFITSFD-------------- 197 (591)
T ss_pred ccHHHHHHHHHHHHhCC-------------CCCEEEEEeCCCHHHHHHHHHHcCCCCCCeEecCCC--------------
Confidence 5555544443322111 34599999999877654333322 22222110000
Q ss_pred ccchhhhccCCCccccccccccccccceeeeEEEecCCchHHHHHHHHHhhhccccCceEEEEeecchhhhhHHHhhhhh
Q 010357 263 ESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEF 342 (512)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~ 342 (512)
..+ ..+.......+...+.+.+... .+.++||||++++.++.+++.|...
T Consensus 198 ------------------------r~n--l~~~v~~~~~~~~~l~~~l~~~----~~~~~IIf~~sr~~~e~la~~L~~~ 247 (591)
T TIGR01389 198 ------------------------RPN--LRFSVVKKNNKQKFLLDYLKKH----RGQSGIIYASSRKKVEELAERLESQ 247 (591)
T ss_pred ------------------------CCC--cEEEEEeCCCHHHHHHHHHHhc----CCCCEEEEECcHHHHHHHHHHHHhC
Confidence 001 1222223345566666666543 3678999999999999999999876
Q ss_pred cCCCCCCChhHHHhhhhccceeeecCCCCHHHHHHHHHhhhcCCCcEEEeecccccCCCCCCCcEEEEeCCCCChhHHHH
Q 010357 343 QWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVH 422 (512)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~v~~l~g~~~~~~r~~~~~~f~~~~~~vLvaT~~~~~Gldip~~~~VI~~~~p~s~~~~~Q 422 (512)
++++..+||+|+.++|..+++.|.+|+.+|||||+++++|+|+|++++||++++|.|...|+|
T Consensus 248 -----------------g~~~~~~H~~l~~~~R~~i~~~F~~g~~~vlVaT~a~~~GID~p~v~~VI~~~~p~s~~~y~Q 310 (591)
T TIGR01389 248 -----------------GISALAYHAGLSNKVRAENQEDFLYDDVKVMVATNAFGMGIDKPNVRFVIHYDMPGNLESYYQ 310 (591)
T ss_pred -----------------CCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEechhhccCcCCCCCEEEEcCCCCCHHHHhh
Confidence 778999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcccCCCCccEEEecCccchhHHHHHHHc
Q 010357 423 RVGRTARLGERGDSLLFLQPVEMDYLQDLEKH 454 (512)
Q Consensus 423 ~~GRagR~g~~g~~~~~~~~~~~~~~~~l~~~ 454 (512)
++|||||.|.+|.|++++++.|...++.+.+.
T Consensus 311 ~~GRaGR~G~~~~~il~~~~~d~~~~~~~i~~ 342 (591)
T TIGR01389 311 EAGRAGRDGLPAEAILLYSPADIALLKRRIEQ 342 (591)
T ss_pred hhccccCCCCCceEEEecCHHHHHHHHHHHhc
Confidence 99999999999999999999887777766654
No 39
>PRK02362 ski2-like helicase; Provisional
Probab=100.00 E-value=1.6e-46 Score=394.11 Aligned_cols=366 Identities=21% Similarity=0.272 Sum_probs=263.0
Q ss_pred CCcccCCCCHHHHHHHHHhcCCCCCcHHHHHHHHH-hhcCCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceE
Q 010357 18 CSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPV-ILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFA 96 (512)
Q Consensus 18 ~~~~~~~l~~~~~~~l~~~~~~~~~~~~Q~~~~~~-~~~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (512)
..|+++++++++.+.+.+ .||.+|+|+|.+|++. +.+|+|+++++|||||||++|.++++..+.. +.++
T Consensus 1 ~~~~~l~lp~~~~~~l~~-~g~~~l~p~Q~~ai~~~~~~g~nvlv~APTGSGKTlia~lail~~l~~---------~~ka 70 (737)
T PRK02362 1 MKIAELPLPEGVIEFYEA-EGIEELYPPQAEAVEAGLLDGKNLLAAIPTASGKTLIAELAMLKAIAR---------GGKA 70 (737)
T ss_pred CChhhcCCCHHHHHHHHh-CCCCcCCHHHHHHHHHHHhCCCcEEEECCCcchHHHHHHHHHHHHHhc---------CCcE
Confidence 368899999999999965 6999999999999998 7789999999999999999999999998854 6679
Q ss_pred EEEcCcHHHHHHHHHHHHHHHhhcCCcceEEEeCCCchHHHHHHHcCCCCEEEeCChHHHHHHhhcCCCcCCceeEEEEc
Q 010357 97 LVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFD 176 (512)
Q Consensus 97 lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lV~D 176 (512)
+|++|+++|+.|+.+.++.+.. ++ ..+..+.|+..... ......+|+|+||+++..++.+ ....++++++||+|
T Consensus 71 l~i~P~raLa~q~~~~~~~~~~-~g-~~v~~~tGd~~~~~---~~l~~~~IiV~Tpek~~~llr~-~~~~l~~v~lvViD 144 (737)
T PRK02362 71 LYIVPLRALASEKFEEFERFEE-LG-VRVGISTGDYDSRD---EWLGDNDIIVATSEKVDSLLRN-GAPWLDDITCVVVD 144 (737)
T ss_pred EEEeChHHHHHHHHHHHHHhhc-CC-CEEEEEeCCcCccc---cccCCCCEEEECHHHHHHHHhc-ChhhhhhcCEEEEE
Confidence 9999999999999999997643 33 45555666544332 2234579999999999888775 33446789999999
Q ss_pred chhHHHhcCchHHHHHHHHHhccCCCCCCCCCCcccccceeEEEEEEecchhhHHHHHhhcCCCeEEccCCCcCCCCccc
Q 010357 177 EADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLPEDKSH 256 (512)
Q Consensus 177 Eah~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (512)
|+|.+.+.+++..++.++..++... ...|++++|||+++. ..+..+..... +.....+.+.....
T Consensus 145 E~H~l~d~~rg~~le~il~rl~~~~------------~~~qii~lSATl~n~-~~la~wl~~~~--~~~~~rpv~l~~~v 209 (737)
T PRK02362 145 EVHLIDSANRGPTLEVTLAKLRRLN------------PDLQVVALSATIGNA-DELADWLDAEL--VDSEWRPIDLREGV 209 (737)
T ss_pred CccccCCCcchHHHHHHHHHHHhcC------------CCCcEEEEcccCCCH-HHHHHHhCCCc--ccCCCCCCCCeeeE
Confidence 9999988889999999988876422 167999999999874 33444332221 11111111100000
Q ss_pred cccCCcccchhhhccCCCccccccccccccccceeeeEEEecCCchHHHHHHHHHhhhccccCceEEEEeecchhhhhHH
Q 010357 257 VRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHY 336 (512)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~ 336 (512)
...... .... .+.. .....+ ......+.+.+ ..++++||||++++.++.++
T Consensus 210 ~~~~~~----------------------~~~~--~~~~--~~~~~~-~~~~~~~~~~~--~~~~~~LVF~~sr~~~~~~a 260 (737)
T PRK02362 210 FYGGAI----------------------HFDD--SQRE--VEVPSK-DDTLNLVLDTL--EEGGQCLVFVSSRRNAEGFA 260 (737)
T ss_pred ecCCee----------------------cccc--cccc--CCCccc-hHHHHHHHHHH--HcCCCeEEEEeCHHHHHHHH
Confidence 000000 0000 0000 000111 11222232222 24689999999999999999
Q ss_pred HhhhhhcCCCC--------------------CCChhHHHhhhhccceeeecCCCCHHHHHHHHHhhhcCCCcEEEeeccc
Q 010357 337 SLLSEFQWSPH--------------------SQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVA 396 (512)
Q Consensus 337 ~~l~~~~~~~~--------------------~~~~~~~~~~~~~~~v~~l~g~~~~~~r~~~~~~f~~~~~~vLvaT~~~ 396 (512)
..|........ ......+... ...++.++||+|+..+|..+++.|++|.++|||||+++
T Consensus 261 ~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~-l~~gva~hHagl~~~eR~~ve~~Fr~G~i~VLvaT~tl 339 (737)
T PRK02362 261 KRAASALKKTLTAAERAELAELAEEIREVSDTETSKDLADC-VAKGAAFHHAGLSREHRELVEDAFRDRLIKVISSTPTL 339 (737)
T ss_pred HHHHHHhhhcCCHHHHHHHHHHHHHHHhccCccccHHHHHH-HHhCEEeecCCCCHHHHHHHHHHHHcCCCeEEEechhh
Confidence 99876532100 0011112222 24689999999999999999999999999999999999
Q ss_pred ccCCCCCCCcEEEE----eC-----CCCChhHHHHhhhhcccCCCC--ccEEEecCccc
Q 010357 397 ARGLDFPKVKCIIQ----YD-----SAGEATEYVHRVGRTARLGER--GDSLLFLQPVE 444 (512)
Q Consensus 397 ~~Gldip~~~~VI~----~~-----~p~s~~~~~Q~~GRagR~g~~--g~~~~~~~~~~ 444 (512)
++|+|+|+.++||+ |+ .|.+..+|.||+|||||.|.. |.+++++...+
T Consensus 340 a~GvnlPa~~VVI~~~~~yd~~~g~~~~s~~~y~Qm~GRAGR~g~d~~G~~ii~~~~~~ 398 (737)
T PRK02362 340 AAGLNLPARRVIIRDYRRYDGGAGMQPIPVLEYHQMAGRAGRPGLDPYGEAVLLAKSYD 398 (737)
T ss_pred hhhcCCCceEEEEecceeecCCCCceeCCHHHHHHHhhcCCCCCCCCCceEEEEecCch
Confidence 99999999999996 55 588999999999999999865 89999987643
No 40
>KOG4284 consensus DEAD box protein [Transcription]
Probab=100.00 E-value=1.6e-47 Score=361.64 Aligned_cols=359 Identities=26% Similarity=0.417 Sum_probs=311.2
Q ss_pred cCCcccCCCCHHHHHHHHHhcCCCCCcHHHHHHHHHhhcCCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceE
Q 010357 17 SCSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFA 96 (512)
Q Consensus 17 ~~~~~~~~l~~~~~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (512)
...|+++-|..+++..|+. -+|..|+++|..|+|+++.+-++||++..|+|||++|...+++.+... ....+.
T Consensus 24 ~~~fe~l~l~r~vl~glrr-n~f~~ptkiQaaAIP~~~~kmDliVQaKSGTGKTlVfsv~av~sl~~~------~~~~q~ 96 (980)
T KOG4284|consen 24 TPGFEQLALWREVLLGLRR-NAFALPTKIQAAAIPAIFSKMDLIVQAKSGTGKTLVFSVLAVESLDSR------SSHIQK 96 (980)
T ss_pred CCCHHHHHHHHHHHHHHHh-hcccCCCchhhhhhhhhhcccceEEEecCCCCceEEEEeeeehhcCcc------cCccee
Confidence 3489999999999999964 599999999999999999999999999999999999998888877552 235679
Q ss_pred EEEcCcHHHHHHHHHHHHHHHhhcCCcceEEEeCCCchHHHHHHHcCCCCEEEeCChHHHHHHhhcCCCcCCceeEEEEc
Q 010357 97 LVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFD 176 (512)
Q Consensus 97 lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lV~D 176 (512)
+|++|||+++.|+.+.+..++..+......++.||........+++ .++|+|+||+++..++.. ..++.++++++|+|
T Consensus 97 ~Iv~PTREiaVQI~~tv~~v~~sf~g~~csvfIGGT~~~~d~~rlk-~~rIvIGtPGRi~qL~el-~~~n~s~vrlfVLD 174 (980)
T KOG4284|consen 97 VIVTPTREIAVQIKETVRKVAPSFTGARCSVFIGGTAHKLDLIRLK-QTRIVIGTPGRIAQLVEL-GAMNMSHVRLFVLD 174 (980)
T ss_pred EEEecchhhhhHHHHHHHHhcccccCcceEEEecCchhhhhhhhhh-hceEEecCchHHHHHHHh-cCCCccceeEEEec
Confidence 9999999999999999999999888888888999988777666654 457999999999998866 88889999999999
Q ss_pred chhHHHh-cCchHHHHHHHHHhccCCCCCCCCCCcccccceeEEEEEEecchhhHHHHHhhcCCCeEEccCCCcCCCCcc
Q 010357 177 EADRILE-LGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLPEDKS 255 (512)
Q Consensus 177 Eah~l~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (512)
|||.|.+ ..|...+..|+..+|. .+|++.+|||-+..++..+..++++|.++........
T Consensus 175 EADkL~~t~sfq~~In~ii~slP~---------------~rQv~a~SATYp~nLdn~Lsk~mrdp~lVr~n~~d~~---- 235 (980)
T KOG4284|consen 175 EADKLMDTESFQDDINIIINSLPQ---------------IRQVAAFSATYPRNLDNLLSKFMRDPALVRFNADDVQ---- 235 (980)
T ss_pred cHHhhhchhhHHHHHHHHHHhcch---------------hheeeEEeccCchhHHHHHHHHhcccceeecccCCce----
Confidence 9999988 5699999999999998 8999999999999999999999999999888776522
Q ss_pred ccccCCcccchhhhccCCCccccccccccccccceeeeEEEecCC----chHHHHHHHHHhhhccccCceEEEEeecchh
Q 010357 256 HVRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCG----SRLAVLLSILKHLFDTEVSQKLVVFFSTCDA 331 (512)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~k~~~l~~~l~~~~~~~~~~~~lvf~~~~~~ 331 (512)
.-.+.+++...+.. +-+....+.|.++|..-+-..+||||+....
T Consensus 236 -------------------------------L~GikQyv~~~~s~nnsveemrlklq~L~~vf~~ipy~QAlVF~~~~sr 284 (980)
T KOG4284|consen 236 -------------------------------LFGIKQYVVAKCSPNNSVEEMRLKLQKLTHVFKSIPYVQALVFCDQISR 284 (980)
T ss_pred -------------------------------eechhheeeeccCCcchHHHHHHHHHHHHHHHhhCchHHHHhhhhhhhh
Confidence 23345555554332 2233445556666666677899999999999
Q ss_pred hhhHHHhhhhhcCCCCCCChhHHHhhhhccceeeecCCCCHHHHHHHHHhhhcCCCcEEEeecccccCCCCCCCcEEEEe
Q 010357 332 VDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQY 411 (512)
Q Consensus 332 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~l~g~~~~~~r~~~~~~f~~~~~~vLvaT~~~~~Gldip~~~~VI~~ 411 (512)
|+-++.+|+.. |+.+-++.|.|++.+|..+++.+++-..+|||+||..++|||-|++++||+.
T Consensus 285 a~~~a~~L~ss-----------------G~d~~~ISgaM~Q~~Rl~a~~~lr~f~~rILVsTDLtaRGIDa~~vNLVVNi 347 (980)
T KOG4284|consen 285 AEPIATHLKSS-----------------GLDVTFISGAMSQKDRLLAVDQLRAFRVRILVSTDLTARGIDADNVNLVVNI 347 (980)
T ss_pred hhHHHHHhhcc-----------------CCCeEEeccccchhHHHHHHHHhhhceEEEEEecchhhccCCccccceEEec
Confidence 99999999998 8899999999999999999999999999999999999999999999999999
Q ss_pred CCCCChhHHHHhhhhcccCCCCccEEEecCccch-hHHHHH
Q 010357 412 DSAGEATEYVHRVGRTARLGERGDSLLFLQPVEM-DYLQDL 451 (512)
Q Consensus 412 ~~p~s~~~~~Q~~GRagR~g~~g~~~~~~~~~~~-~~~~~l 451 (512)
|+|.+..+|.||+|||||.|..|.++.|+..... +.+..+
T Consensus 348 D~p~d~eTY~HRIGRAgRFG~~G~aVT~~~~~~e~~~f~~m 388 (980)
T KOG4284|consen 348 DAPADEETYFHRIGRAGRFGAHGAAVTLLEDERELKGFTAM 388 (980)
T ss_pred CCCcchHHHHHHhhhcccccccceeEEEeccchhhhhhHHH
Confidence 9999999999999999999999999999876553 554444
No 41
>PRK13767 ATP-dependent helicase; Provisional
Probab=100.00 E-value=1.2e-45 Score=390.46 Aligned_cols=360 Identities=20% Similarity=0.244 Sum_probs=254.6
Q ss_pred CCHHHHHHHHHhcCCCCCcHHHHHHHHHhhcCCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcHH
Q 010357 25 LHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRE 104 (512)
Q Consensus 25 l~~~~~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~ 104 (512)
+++.+.+.+.+ +|.+|+|+|.++++.+++|+|++++||||||||++|.+|+++.+...........+.++||++|+++
T Consensus 18 l~~~v~~~~~~--~~~~~tpiQ~~Ai~~il~g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~~~~~~~~~~LyIsPtra 95 (876)
T PRK13767 18 LRPYVREWFKE--KFGTFTPPQRYAIPLIHEGKNVLISSPTGSGKTLAAFLAIIDELFRLGREGELEDKVYCLYVSPLRA 95 (876)
T ss_pred cCHHHHHHHHH--ccCCCCHHHHHHHHHHHcCCCEEEECCCCCcHHHHHHHHHHHHHHhhccccCCCCCeEEEEEcCHHH
Confidence 66788888754 6888999999999999999999999999999999999999998875432222234678999999999
Q ss_pred HHHHHHHHHHHHH-------h----hcCCcceEEEeCCCchHHHHHHHcCCCCEEEeCChHHHHHHhhcCC-CcCCceeE
Q 010357 105 LCLQVYEILHKLL-------H----RFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSS-FLHTNLRW 172 (512)
Q Consensus 105 L~~q~~~~~~~~~-------~----~~~~~~~~~~~~g~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~-~~~~~~~~ 172 (512)
|+.|+.+.+...+ . ..+...+....|+.........+...++|+|+||++|..++..... ..+.++++
T Consensus 96 La~di~~~L~~~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l~~~p~IlVtTPE~L~~ll~~~~~~~~l~~l~~ 175 (876)
T PRK13767 96 LNNDIHRNLEEPLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQKMLKKPPHILITTPESLAILLNSPKFREKLRTVKW 175 (876)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHHHhCCCCEEEecHHHHHHHhcChhHHHHHhcCCE
Confidence 9999988765322 1 1113445566666666666566677899999999999877754321 14678999
Q ss_pred EEEcchhHHHhcCchHHHHHHHHHhccCCCCCCCCCCcccccceeEEEEEEecchhhHHHHHhhcCC-----Ce-EEccC
Q 010357 173 IIFDEADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLET-----PV-LIGLD 246 (512)
Q Consensus 173 lV~DEah~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~-----~~-~~~~~ 246 (512)
||+||+|.+.+..++..+...+.++.... ....|++++|||+++. ..+..+.... +. ...+.
T Consensus 176 VVIDE~H~l~~~~RG~~l~~~L~rL~~l~-----------~~~~q~IglSATl~~~-~~va~~L~~~~~~~~~r~~~iv~ 243 (876)
T PRK13767 176 VIVDEIHSLAENKRGVHLSLSLERLEELA-----------GGEFVRIGLSATIEPL-EEVAKFLVGYEDDGEPRDCEIVD 243 (876)
T ss_pred EEEechhhhccCccHHHHHHHHHHHHHhc-----------CCCCeEEEEecccCCH-HHHHHHhcCccccCCCCceEEEc
Confidence 99999999998888888887777765422 1267899999999863 3333332211 00 00000
Q ss_pred CCcCCCCccccccCCcccchhhhccCCCccccccccccccccceeeeEEEecCCchHHHHHHHHHhhhccccCceEEEEe
Q 010357 247 EKKLPEDKSHVRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFF 326 (512)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~lvf~ 326 (512)
..... ..... ...+. ..............+...+..... .+.++||||
T Consensus 244 ~~~~k-------------~~~i~--------------v~~p~---~~l~~~~~~~~~~~l~~~L~~~i~--~~~~~LVF~ 291 (876)
T PRK13767 244 ARFVK-------------PFDIK--------------VISPV---DDLIHTPAEEISEALYETLHELIK--EHRTTLIFT 291 (876)
T ss_pred cCCCc-------------cceEE--------------EeccC---ccccccccchhHHHHHHHHHHHHh--cCCCEEEEe
Confidence 00000 00000 00000 000001111222334444444432 357899999
Q ss_pred ecchhhhhHHHhhhhhcCCCCCCChhHHHhhhhccceeeecCCCCHHHHHHHHHhhhcCCCcEEEeecccccCCCCCCCc
Q 010357 327 STCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVK 406 (512)
Q Consensus 327 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~l~g~~~~~~r~~~~~~f~~~~~~vLvaT~~~~~Gldip~~~ 406 (512)
+++..++.++..|....... ..+.++..+||+|+.++|..+++.|++|+.++||||+++++|||+|+++
T Consensus 292 nTr~~ae~la~~L~~~~~~~-----------~~~~~i~~hHg~ls~~~R~~ve~~fk~G~i~vLVaTs~Le~GIDip~Vd 360 (876)
T PRK13767 292 NTRSGAERVLYNLRKRFPEE-----------YDEDNIGAHHSSLSREVRLEVEEKLKRGELKVVVSSTSLELGIDIGYID 360 (876)
T ss_pred CCHHHHHHHHHHHHHhchhh-----------ccccceeeeeCCCCHHHHHHHHHHHHcCCCeEEEECChHHhcCCCCCCc
Confidence 99999999999998742110 1146799999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCChhHHHHhhhhcccCC-CCccEEEecC
Q 010357 407 CIIQYDSAGEATEYVHRVGRTARLG-ERGDSLLFLQ 441 (512)
Q Consensus 407 ~VI~~~~p~s~~~~~Q~~GRagR~g-~~g~~~~~~~ 441 (512)
+||+++.|.++.+|+||+||+||.+ ..+.+.++..
T Consensus 361 ~VI~~~~P~sv~~ylQRiGRaGR~~g~~~~g~ii~~ 396 (876)
T PRK13767 361 LVVLLGSPKSVSRLLQRIGRAGHRLGEVSKGRIIVV 396 (876)
T ss_pred EEEEeCCCCCHHHHHHhcccCCCCCCCCCcEEEEEc
Confidence 9999999999999999999999874 3444544443
No 42
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.9e-46 Score=350.68 Aligned_cols=375 Identities=28% Similarity=0.422 Sum_probs=301.7
Q ss_pred CCccc----CCCCHHHHHHHHHhcCCCCCcHHHHHHHHHhhcCCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCC
Q 010357 18 CSFSS----LGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSG 93 (512)
Q Consensus 18 ~~~~~----~~l~~~~~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~ 93 (512)
.+|+. +.++..++..+.+ .+|..|+|.|.+|+|.++.+++++.|+|||||||++|.+|++..+..... .....|
T Consensus 132 ~~f~~lt~~~~~~~~ll~nl~~-~~F~~Pt~iq~~aipvfl~~r~~lAcapTGsgKtlaf~~Pil~~L~~~~~-~~~~~g 209 (593)
T KOG0344|consen 132 LSFSDLTYDYSMNKRLLENLQE-LGFDEPTPIQKQAIPVFLEKRDVLACAPTGSGKTLAFNLPILQHLKDLSQ-EKHKVG 209 (593)
T ss_pred ccccccchhhhhcHHHHHhHhh-CCCCCCCcccchhhhhhhcccceEEeccCCCcchhhhhhHHHHHHHHhhc-ccCccc
Confidence 45554 5678899999965 59999999999999999999999999999999999999999999987554 222458
Q ss_pred ceEEEEcCcHHHHHHHHHHHHHHH--hhcCCcceEEEeCCCchHHHHHHHcCCCCEEEeCChHHHHHHhhcC-CCcCCce
Q 010357 94 TFALVLVPTRELCLQVYEILHKLL--HRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTS-SFLHTNL 170 (512)
Q Consensus 94 ~~~lil~Pt~~L~~q~~~~~~~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~-~~~~~~~ 170 (512)
-+++|+.|+++|+.|.+.++.++. ...+......-................++++++||.++..++...+ ...+.++
T Consensus 210 l~a~Il~ptreLa~Qi~re~~k~~~~~~t~~~a~~~~~~~~~~qk~a~~~~~k~dili~TP~ri~~~~~~~~~~idl~~V 289 (593)
T KOG0344|consen 210 LRALILSPTRELAAQIYREMRKYSIDEGTSLRAAQFSKPAYPSQKPAFLSDEKYDILISTPMRIVGLLGLGKLNIDLSKV 289 (593)
T ss_pred eEEEEecchHHHHHHHHHHHHhcCCCCCCchhhhhcccccchhhccchhHHHHHHHHhcCHHHHHHHhcCCCccchhhee
Confidence 899999999999999999999987 3222211111111111111112222346899999999999887643 2577899
Q ss_pred eEEEEcchhHHHhc-CchHHHHHHHHHhccCCCCCCCCCCcccccceeEEEEEEecchhhHHHHHhhcCCCeEEccCCCc
Q 010357 171 RWIIFDEADRILEL-GFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKK 249 (512)
Q Consensus 171 ~~lV~DEah~l~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (512)
.++|+||+|.+.+. .|..++..|+..+... ..++-++|||.+..++.++.....+...+.+...+
T Consensus 290 ~~lV~dEaD~lfe~~~f~~Qla~I~sac~s~--------------~i~~a~FSat~~~~VEE~~~~i~~~~~~vivg~~~ 355 (593)
T KOG0344|consen 290 EWLVVDEADLLFEPEFFVEQLADIYSACQSP--------------DIRVALFSATISVYVEEWAELIKSDLKRVIVGLRN 355 (593)
T ss_pred eeEeechHHhhhChhhHHHHHHHHHHHhcCc--------------chhhhhhhccccHHHHHHHHHhhccceeEEEecch
Confidence 99999999999998 8999999999887652 67778999999999999999998888876665543
Q ss_pred CCCCccccccCCcccchhhhccCCCccccccccccccccceeeeEEEe-cCCchHHHHHHHHHhhhccccCceEEEEeec
Q 010357 250 LPEDKSHVRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKV-PCGSRLAVLLSILKHLFDTEVSQKLVVFFST 328 (512)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~k~~~l~~~l~~~~~~~~~~~~lvf~~~ 328 (512)
. ....+.|....+ ....|..++.+.+..- -..+++||+.+
T Consensus 356 s-----------------------------------a~~~V~QelvF~gse~~K~lA~rq~v~~g----~~PP~lIfVQs 396 (593)
T KOG0344|consen 356 S-----------------------------------ANETVDQELVFCGSEKGKLLALRQLVASG----FKPPVLIFVQS 396 (593)
T ss_pred h-----------------------------------HhhhhhhhheeeecchhHHHHHHHHHhcc----CCCCeEEEEec
Confidence 1 123344444444 4567888888888764 46799999999
Q ss_pred chhhhhHHHhhhhhcCCCCCCChhHHHhhhhccceeeecCCCCHHHHHHHHHhhhcCCCcEEEeecccccCCCCCCCcEE
Q 010357 329 CDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCI 408 (512)
Q Consensus 329 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~l~g~~~~~~r~~~~~~f~~~~~~vLvaT~~~~~Gldip~~~~V 408 (512)
.+.+..++..|..+ .++.+..+||..+..+|+.++++|+.|++-||+||+++++|+|+.++++|
T Consensus 397 ~eRak~L~~~L~~~----------------~~i~v~vIh~e~~~~qrde~~~~FR~g~IwvLicTdll~RGiDf~gvn~V 460 (593)
T KOG0344|consen 397 KERAKQLFEELEIY----------------DNINVDVIHGERSQKQRDETMERFRIGKIWVLICTDLLARGIDFKGVNLV 460 (593)
T ss_pred HHHHHHHHHHhhhc----------------cCcceeeEecccchhHHHHHHHHHhccCeeEEEehhhhhccccccCcceE
Confidence 99999999998522 28899999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCChhHHHHhhhhcccCCCCccEEEecCccchhHHHHHHH----cCCCCCccCh
Q 010357 409 IQYDSAGEATEYVHRVGRTARLGERGDSLLFLQPVEMDYLQDLEK----HGVSLTEYPL 463 (512)
Q Consensus 409 I~~~~p~s~~~~~Q~~GRagR~g~~g~~~~~~~~~~~~~~~~l~~----~~~~~~~~~~ 463 (512)
|+||.|.+..+|+||+||+||.|+.|.++.||+..|..+++.+.+ .|.++.+..+
T Consensus 461 InyD~p~s~~syihrIGRtgRag~~g~Aitfytd~d~~~ir~iae~~~~sG~evpe~~m 519 (593)
T KOG0344|consen 461 INYDFPQSDLSYIHRIGRTGRAGRSGKAITFYTDQDMPRIRSIAEVMEQSGCEVPEKIM 519 (593)
T ss_pred EecCCCchhHHHHHHhhccCCCCCCcceEEEeccccchhhhhHHHHHHHcCCcchHHHH
Confidence 999999999999999999999999999999999999777666544 5666666544
No 43
>PRK00254 ski2-like helicase; Provisional
Probab=100.00 E-value=7.4e-45 Score=380.59 Aligned_cols=364 Identities=21% Similarity=0.265 Sum_probs=261.6
Q ss_pred CcccCCCCHHHHHHHHHhcCCCCCcHHHHHHHHH-hhcCCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEE
Q 010357 19 SFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPV-ILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFAL 97 (512)
Q Consensus 19 ~~~~~~l~~~~~~~l~~~~~~~~~~~~Q~~~~~~-~~~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~l 97 (512)
+|+++++++.+.+.+.+ +||.+|+|+|.++++. +.+|+|+++++|||||||++|.+|++..+.. .+.++|
T Consensus 2 ~~~~l~l~~~~~~~l~~-~g~~~l~~~Q~~ai~~~~~~g~nvlv~apTGsGKT~~~~l~il~~l~~--------~~~~~l 72 (720)
T PRK00254 2 KVDELRVDERIKRVLKE-RGIEELYPPQAEALKSGVLEGKNLVLAIPTASGKTLVAEIVMVNKLLR--------EGGKAV 72 (720)
T ss_pred cHHHcCCCHHHHHHHHh-CCCCCCCHHHHHHHHHHHhCCCcEEEECCCCcHHHHHHHHHHHHHHHh--------cCCeEE
Confidence 68899999999999954 6999999999999986 7899999999999999999999999988754 256799
Q ss_pred EEcCcHHHHHHHHHHHHHHHhhcCCcceEEEeCCCchHHHHHHHcCCCCEEEeCChHHHHHHhhcCCCcCCceeEEEEcc
Q 010357 98 VLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDE 177 (512)
Q Consensus 98 il~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lV~DE 177 (512)
|++|+++|+.|+++.+..+. ..+ ..+..+.|+..... .....++|+|+||+++..++.. ....++++++||+||
T Consensus 73 ~l~P~~aLa~q~~~~~~~~~-~~g-~~v~~~~Gd~~~~~---~~~~~~~IiV~Tpe~~~~ll~~-~~~~l~~l~lvViDE 146 (720)
T PRK00254 73 YLVPLKALAEEKYREFKDWE-KLG-LRVAMTTGDYDSTD---EWLGKYDIIIATAEKFDSLLRH-GSSWIKDVKLVVADE 146 (720)
T ss_pred EEeChHHHHHHHHHHHHHHh-hcC-CEEEEEeCCCCCch---hhhccCCEEEEcHHHHHHHHhC-CchhhhcCCEEEEcC
Confidence 99999999999999998753 233 45555666654332 2235689999999999887765 344567899999999
Q ss_pred hhHHHhcCchHHHHHHHHHhccCCCCCCCCCCcccccceeEEEEEEecchhhHHHHHhhcCCCeEEccCCCcCCCCcccc
Q 010357 178 ADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLPEDKSHV 257 (512)
Q Consensus 178 ah~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (512)
+|.+.+.+++..++.++..+.. ..|++++|||+++. ..+..+..... +.....+.+.... +
T Consensus 147 ~H~l~~~~rg~~le~il~~l~~---------------~~qiI~lSATl~n~-~~la~wl~~~~--~~~~~rpv~l~~~-~ 207 (720)
T PRK00254 147 IHLIGSYDRGATLEMILTHMLG---------------RAQILGLSATVGNA-EELAEWLNAEL--VVSDWRPVKLRKG-V 207 (720)
T ss_pred cCccCCccchHHHHHHHHhcCc---------------CCcEEEEEccCCCH-HHHHHHhCCcc--ccCCCCCCcceee-E
Confidence 9999888899999999988764 78999999999874 44554432221 1111111000000 0
Q ss_pred ccCCcccchhhhccCCCccccccccccccccceeeeEEEecCC--ch-HHHHHHHHHhhhccccCceEEEEeecchhhhh
Q 010357 258 RFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCG--SR-LAVLLSILKHLFDTEVSQKLVVFFSTCDAVDF 334 (512)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~k-~~~l~~~l~~~~~~~~~~~~lvf~~~~~~~~~ 334 (512)
..+.+...... .+ ...+...+.+... .++++||||++++.++.
T Consensus 208 --------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~--~~~~vLVF~~sr~~~~~ 253 (720)
T PRK00254 208 --------------------------------FYQGFLFWEDGKIERFPNSWESLVYDAVK--KGKGALVFVNTRRSAEK 253 (720)
T ss_pred --------------------------------ecCCeeeccCcchhcchHHHHHHHHHHHH--hCCCEEEEEcChHHHHH
Confidence 00000000000 00 1122233333322 35799999999999999
Q ss_pred HHHhhhhhcCC---CCC--------------CChhHHHhhhhccceeeecCCCCHHHHHHHHHhhhcCCCcEEEeecccc
Q 010357 335 HYSLLSEFQWS---PHS--------------QPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAA 397 (512)
Q Consensus 335 l~~~l~~~~~~---~~~--------------~~~~~~~~~~~~~~v~~l~g~~~~~~r~~~~~~f~~~~~~vLvaT~~~~ 397 (512)
++..+...... ... .....+... ...++.++||+|++++|..+++.|++|.++|||||++++
T Consensus 254 ~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~-l~~gv~~hHagl~~~eR~~ve~~F~~G~i~VLvaT~tLa 332 (720)
T PRK00254 254 EALELAKKIKRFLTKPELRALKELADSLEENPTNEKLKKA-LRGGVAFHHAGLGRTERVLIEDAFREGLIKVITATPTLS 332 (720)
T ss_pred HHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCcHHHHHH-HhhCEEEeCCCCCHHHHHHHHHHHHCCCCeEEEeCcHHh
Confidence 88777543211 000 001112222 356899999999999999999999999999999999999
Q ss_pred cCCCCCCCcEEEE-------eCCCC-ChhHHHHhhhhcccCC--CCccEEEecCccc-hhHHHHH
Q 010357 398 RGLDFPKVKCIIQ-------YDSAG-EATEYVHRVGRTARLG--ERGDSLLFLQPVE-MDYLQDL 451 (512)
Q Consensus 398 ~Gldip~~~~VI~-------~~~p~-s~~~~~Q~~GRagR~g--~~g~~~~~~~~~~-~~~~~~l 451 (512)
+|+|+|++++||. ++.|. +..+|.||+|||||.| ..|.+++++...+ .++++.+
T Consensus 333 ~Gvnipa~~vVI~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~~d~~G~~ii~~~~~~~~~~~~~~ 397 (720)
T PRK00254 333 AGINLPAFRVIIRDTKRYSNFGWEDIPVLEIQQMMGRAGRPKYDEVGEAIIVATTEEPSKLMERY 397 (720)
T ss_pred hhcCCCceEEEECCceEcCCCCceeCCHHHHHHhhhccCCCCcCCCceEEEEecCcchHHHHHHH
Confidence 9999999999994 34333 5779999999999975 5689999987655 3445444
No 44
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=100.00 E-value=3.1e-44 Score=362.04 Aligned_cols=344 Identities=24% Similarity=0.308 Sum_probs=269.0
Q ss_pred CCHHHHHHHHHhcCCCCCcHHHHHHHHHhhcCCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcHH
Q 010357 25 LHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRE 104 (512)
Q Consensus 25 l~~~~~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~ 104 (512)
|++.+.+.++.+ |.+||+.|.+|++.+.+|+|+|+.||||||||.++.+|++..+.... ......+-.+|||+|.++
T Consensus 8 l~~~v~~~~~~~--~~~~t~~Q~~a~~~i~~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~-~~~~~~~i~~lYIsPLkA 84 (814)
T COG1201 8 LDPRVREWFKRK--FTSLTPPQRYAIPEIHSGENVLIIAPTGSGKTEAAFLPVINELLSLG-KGKLEDGIYALYISPLKA 84 (814)
T ss_pred cCHHHHHHHHHh--cCCCCHHHHHHHHHHhCCCceEEEcCCCCChHHHHHHHHHHHHHhcc-CCCCCCceEEEEeCcHHH
Confidence 678999999764 88999999999999999999999999999999999999999998864 112234788999999999
Q ss_pred HHHHHHHHHHHHHhhcCCcceEEEeCCCchHHHHHHHcCCCCEEEeCChHHHHHHhhcCCC-cCCceeEEEEcchhHHHh
Q 010357 105 LCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSF-LHTNLRWIIFDEADRILE 183 (512)
Q Consensus 105 L~~q~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~-~~~~~~~lV~DEah~l~~ 183 (512)
|..++...+..++..+|..+ .+-+|+...........+.+||+|+|||+|.-++...+.. .+.++.+||+||+|.+.+
T Consensus 85 Ln~Di~~rL~~~~~~~G~~v-~vRhGDT~~~er~r~~~~PPdILiTTPEsL~lll~~~~~r~~l~~vr~VIVDEiHel~~ 163 (814)
T COG1201 85 LNNDIRRRLEEPLRELGIEV-AVRHGDTPQSEKQKMLKNPPHILITTPESLAILLNSPKFRELLRDVRYVIVDEIHALAE 163 (814)
T ss_pred HHHHHHHHHHHHHHHcCCcc-ceecCCCChHHhhhccCCCCcEEEeChhHHHHHhcCHHHHHHhcCCcEEEeehhhhhhc
Confidence 99999999999999888555 4444444444444455566999999999998877663222 567999999999999999
Q ss_pred cCchHHHHHHHHHhccCCCCCCCCCCcccccceeEEEEEEecchhhHHHHHhhcCC--C-eEEccCCCcCCCCccccccC
Q 010357 184 LGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLET--P-VLIGLDEKKLPEDKSHVRFG 260 (512)
Q Consensus 184 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~ 260 (512)
..++.++..-+.++..... +.|.|++|||..+..+ +.++.... + .++......
T Consensus 164 sKRG~~Lsl~LeRL~~l~~------------~~qRIGLSATV~~~~~-varfL~g~~~~~~Iv~~~~~k----------- 219 (814)
T COG1201 164 SKRGVQLALSLERLRELAG------------DFQRIGLSATVGPPEE-VAKFLVGFGDPCEIVDVSAAK----------- 219 (814)
T ss_pred cccchhhhhhHHHHHhhCc------------ccEEEeehhccCCHHH-HHHHhcCCCCceEEEEcccCC-----------
Confidence 8899999999888876432 7899999999986444 44433333 2 333333221
Q ss_pred CcccchhhhccCCCccccccccccccccceeeeEEEecC-----CchHHHHHHHHHhhhccccCceEEEEeecchhhhhH
Q 010357 261 SLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPC-----GSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFH 335 (512)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~k~~~l~~~l~~~~~~~~~~~~lvf~~~~~~~~~l 335 (512)
+.......... ..-...++..+.++... ...+|||+||+..+|.+
T Consensus 220 ----------------------------~~~i~v~~p~~~~~~~~~~~~~~~~~i~~~v~~--~~ttLIF~NTR~~aE~l 269 (814)
T COG1201 220 ----------------------------KLEIKVISPVEDLIYDEELWAALYERIAELVKK--HRTTLIFTNTRSGAERL 269 (814)
T ss_pred ----------------------------cceEEEEecCCccccccchhHHHHHHHHHHHhh--cCcEEEEEeChHHHHHH
Confidence 00000000000 22334444445444322 35999999999999999
Q ss_pred HHhhhhhcCCCCCCChhHHHhhhhccceeeecCCCCHHHHHHHHHhhhcCCCcEEEeecccccCCCCCCCcEEEEeCCCC
Q 010357 336 YSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAG 415 (512)
Q Consensus 336 ~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~l~g~~~~~~r~~~~~~f~~~~~~vLvaT~~~~~Gldip~~~~VI~~~~p~ 415 (512)
+..|+... +..+..+||+++.++|..++++|++|+.+++|||+.++-|||+.++++||+++.|.
T Consensus 270 ~~~L~~~~----------------~~~i~~HHgSlSre~R~~vE~~lk~G~lravV~TSSLELGIDiG~vdlVIq~~SP~ 333 (814)
T COG1201 270 AFRLKKLG----------------PDIIEVHHGSLSRELRLEVEERLKEGELKAVVATSSLELGIDIGDIDLVIQLGSPK 333 (814)
T ss_pred HHHHHHhc----------------CCceeeecccccHHHHHHHHHHHhcCCceEEEEccchhhccccCCceEEEEeCCcH
Confidence 99999873 36899999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHhhhhcccC-CCCccEEEecCc
Q 010357 416 EATEYVHRVGRTARL-GERGDSLLFLQP 442 (512)
Q Consensus 416 s~~~~~Q~~GRagR~-g~~g~~~~~~~~ 442 (512)
++..++||+||+|+. |.....+++...
T Consensus 334 sV~r~lQRiGRsgHr~~~~Skg~ii~~~ 361 (814)
T COG1201 334 SVNRFLQRIGRAGHRLGEVSKGIIIAED 361 (814)
T ss_pred HHHHHhHhccccccccCCcccEEEEecC
Confidence 999999999999975 445677777665
No 45
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=100.00 E-value=4.5e-44 Score=373.94 Aligned_cols=335 Identities=19% Similarity=0.247 Sum_probs=252.1
Q ss_pred CCCHHHHHHHHHhcCCCCCcHHHHHHHHHhhcC------CCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEE
Q 010357 24 GLHSTLCDQLRERLGFEAPTKVQAQAIPVILSG------RHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFAL 97 (512)
Q Consensus 24 ~l~~~~~~~l~~~~~~~~~~~~Q~~~~~~~~~~------~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~l 97 (512)
+.+..+.+.+.+.+||. ||+.|.+|++.+.++ ++.+++||||||||.+|+.+++..+.. +.+++
T Consensus 435 ~~~~~~~~~~~~~~~f~-~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~~---------g~qvl 504 (926)
T TIGR00580 435 PPDLEWQQEFEDSFPFE-ETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVLD---------GKQVA 504 (926)
T ss_pred CCCHHHHHHHHHhCCCC-CCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHHh---------CCeEE
Confidence 44567788887889996 999999999999874 689999999999999999999988765 67899
Q ss_pred EEcCcHHHHHHHHHHHHHHHhhcCCcceEEEeCCCchHHH---HHHHcC-CCCEEEeCChHHHHHHhhcCCCcCCceeEE
Q 010357 98 VLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKE---KARLRK-GISILVATPGRLLDHLKHTSSFLHTNLRWI 173 (512)
Q Consensus 98 il~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~g~~~~~~---~~~~~~-~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~l 173 (512)
|++||++|+.|+++.++.++..++ ..+..+.++...... ...+.. .++|+|+||..+ . +...+.+++++
T Consensus 505 vLvPT~~LA~Q~~~~f~~~~~~~~-i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll----~--~~v~f~~L~ll 577 (926)
T TIGR00580 505 VLVPTTLLAQQHFETFKERFANFP-VTIELLSRFRSAKEQNEILKELASGKIDILIGTHKLL----Q--KDVKFKDLGLL 577 (926)
T ss_pred EEeCcHHHHHHHHHHHHHHhccCC-cEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHHh----h--CCCCcccCCEE
Confidence 999999999999999999887654 344555555443332 333433 589999999533 2 33456789999
Q ss_pred EEcchhHHHhcCchHHHHHHHHHhccCCCCCCCCCCcccccceeEEEEEEecchhhHHHHHhhcCCCeEEccCCCcCCCC
Q 010357 174 IFDEADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLPED 253 (512)
Q Consensus 174 V~DEah~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (512)
|+||+|+ |+......+..++. ..++++||||+.+...........++..+...+..
T Consensus 578 VIDEahr-----fgv~~~~~L~~~~~---------------~~~vL~~SATpiprtl~~~l~g~~d~s~I~~~p~~---- 633 (926)
T TIGR00580 578 IIDEEQR-----FGVKQKEKLKELRT---------------SVDVLTLSATPIPRTLHMSMSGIRDLSIIATPPED---- 633 (926)
T ss_pred Eeecccc-----cchhHHHHHHhcCC---------------CCCEEEEecCCCHHHHHHHHhcCCCcEEEecCCCC----
Confidence 9999998 45555555655544 78999999998776555544444455444322211
Q ss_pred ccccccCCcccchhhhccCCCccccccccccccccceeeeEEEecCCchHHHHHHHHHhhhccccCceEEEEeecchhhh
Q 010357 254 KSHVRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVD 333 (512)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~lvf~~~~~~~~ 333 (512)
...+...+.... . ..+...+.... ..+++++|||++++.++
T Consensus 634 ---------------------------------R~~V~t~v~~~~--~--~~i~~~i~~el--~~g~qv~if~n~i~~~e 674 (926)
T TIGR00580 634 ---------------------------------RLPVRTFVMEYD--P--ELVREAIRREL--LRGGQVFYVHNRIESIE 674 (926)
T ss_pred ---------------------------------ccceEEEEEecC--H--HHHHHHHHHHH--HcCCeEEEEECCcHHHH
Confidence 001111221111 1 22222232221 23679999999999999
Q ss_pred hHHHhhhhhcCCCCCCChhHHHhhhhccceeeecCCCCHHHHHHHHHhhhcCCCcEEEeecccccCCCCCCCcEEEEeCC
Q 010357 334 FHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDS 413 (512)
Q Consensus 334 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~l~g~~~~~~r~~~~~~f~~~~~~vLvaT~~~~~Gldip~~~~VI~~~~ 413 (512)
.+++.|+.. +++.++..+||+|+..+|+.++++|++|+.+|||||+++++|+|+|++++||+++.
T Consensus 675 ~l~~~L~~~---------------~p~~~v~~lHG~m~~~eRe~im~~F~~Gk~~ILVaT~iie~GIDIp~v~~VIi~~a 739 (926)
T TIGR00580 675 KLATQLREL---------------VPEARIAIAHGQMTENELEEVMLEFYKGEFQVLVCTTIIETGIDIPNANTIIIERA 739 (926)
T ss_pred HHHHHHHHh---------------CCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhcccccccCCEEEEecC
Confidence 999998875 23778999999999999999999999999999999999999999999999999998
Q ss_pred CC-ChhHHHHhhhhcccCCCCccEEEecCcc------chhHHHHHHH
Q 010357 414 AG-EATEYVHRVGRTARLGERGDSLLFLQPV------EMDYLQDLEK 453 (512)
Q Consensus 414 p~-s~~~~~Q~~GRagR~g~~g~~~~~~~~~------~~~~~~~l~~ 453 (512)
|. +..+|.||+||+||.|+.|.|++++.+. ..+.++.+++
T Consensus 740 ~~~gls~l~Qr~GRvGR~g~~g~aill~~~~~~l~~~~~~RL~~~~~ 786 (926)
T TIGR00580 740 DKFGLAQLYQLRGRVGRSKKKAYAYLLYPHQKALTEDAQKRLEAIQE 786 (926)
T ss_pred CCCCHHHHHHHhcCCCCCCCCeEEEEEECCcccCCHHHHHHHHHHHH
Confidence 65 6779999999999999999999998643 3455555555
No 46
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=100.00 E-value=3.7e-44 Score=332.84 Aligned_cols=368 Identities=22% Similarity=0.247 Sum_probs=258.8
Q ss_pred CCCcHHHHHHHHHhhcCCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHHhh
Q 010357 40 EAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHR 119 (512)
Q Consensus 40 ~~~~~~Q~~~~~~~~~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~ 119 (512)
-++|.||......++.+ |++++.|||.|||+++++.+.+.+.. ..+ ++|+++||+.|+.|.+..|.+....
T Consensus 14 ie~R~YQ~~i~a~al~~-NtLvvlPTGLGKT~IA~~V~~~~l~~-------~~~-kvlfLAPTKPLV~Qh~~~~~~v~~i 84 (542)
T COG1111 14 IEPRLYQLNIAAKALFK-NTLVVLPTGLGKTFIAAMVIANRLRW-------FGG-KVLFLAPTKPLVLQHAEFCRKVTGI 84 (542)
T ss_pred ccHHHHHHHHHHHHhhc-CeEEEecCCccHHHHHHHHHHHHHHh-------cCC-eEEEecCCchHHHHHHHHHHHHhCC
Confidence 36999999999888877 99999999999999999999998877 224 7999999999999999999998753
Q ss_pred cCCcceEEEeCCCchHHHHHHHcCCCCEEEeCChHHHHHHhhcCCCcCCceeEEEEcchhHHHhcCchHHHHHHHHHhcc
Q 010357 120 FHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILGS 199 (512)
Q Consensus 120 ~~~~~~~~~~~g~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lV~DEah~l~~~~~~~~~~~i~~~~~~ 199 (512)
.. .. .....|.-........+...+|+|+||+.+.+.+.. +.+++.++.++||||||+..+..-+..+..-+....+
T Consensus 85 p~-~~-i~~ltGev~p~~R~~~w~~~kVfvaTPQvveNDl~~-Grid~~dv~~lifDEAHRAvGnyAYv~Va~~y~~~~k 161 (542)
T COG1111 85 PE-DE-IAALTGEVRPEEREELWAKKKVFVATPQVVENDLKA-GRIDLDDVSLLIFDEAHRAVGNYAYVFVAKEYLRSAK 161 (542)
T ss_pred Ch-hh-eeeecCCCChHHHHHHHhhCCEEEeccHHHHhHHhc-CccChHHceEEEechhhhccCcchHHHHHHHHHHhcc
Confidence 22 22 334456666677777788889999999999998877 7778889999999999997765555555544444433
Q ss_pred CCCCCCCCCCcccccceeEEEEEEecchhhHHHHHhh---cCCCeEEccCCC-cCCCCcccccc----------------
Q 010357 200 RNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKIS---LETPVLIGLDEK-KLPEDKSHVRF---------------- 259 (512)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~---~~~~~~~~~~~~-~~~~~~~~~~~---------------- 259 (512)
++.++++||||....+.+.+.. .-+...+....+ .+.++.....+
T Consensus 162 ---------------~~~ilgLTASPGs~~ekI~eV~~nLgIe~vevrTE~d~DV~~Yv~~~kve~ikV~lp~e~~~ir~ 226 (542)
T COG1111 162 ---------------NPLILGLTASPGSDLEKIQEVVENLGIEKVEVRTEEDPDVRPYVKKIKVEWIKVDLPEEIKEIRD 226 (542)
T ss_pred ---------------CceEEEEecCCCCCHHHHHHHHHhCCcceEEEecCCCccHHHhhccceeEEEeccCcHHHHHHHH
Confidence 7899999999987655544432 222333222221 11111111111
Q ss_pred ----------------CCcccch----hhhccCC-------Ccccc----------------------------------
Q 010357 260 ----------------GSLESDV----KEEVEHP-------STTMR---------------------------------- 278 (512)
Q Consensus 260 ----------------~~~~~~~----~~~~~~~-------~~~~~---------------------------------- 278 (512)
+...... .+..... .....
T Consensus 227 ~l~~~l~~~Lk~L~~~g~~~~~~~~~~kdl~~~~~~~~~~a~~~~~~~~~~l~~~a~~~kl~~a~elletqGi~~~~~Yl 306 (542)
T COG1111 227 LLRDALKPRLKPLKELGVIESSSPVSKKDLLELRQIRLIMAKNEDSDKFRLLSVLAEAIKLAHALELLETQGIRPFYQYL 306 (542)
T ss_pred HHHHHHHHHHHHHHHcCceeccCcccHhHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHH
Confidence 0000000 0000000 00000
Q ss_pred -----ccccccc-cccce------------e-eeEEEecCCchHHHHHHHHHhhhccccCceEEEEeecchhhhhHHHhh
Q 010357 279 -----STTEDFK-LPAQL------------V-QRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLL 339 (512)
Q Consensus 279 -----~~~~~~~-~~~~~------------~-~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l 339 (512)
....... ....+ . ......-.++|+..+.+++++.+....+.++|||++.+++++.+.++|
T Consensus 307 ~~l~e~~~~~~sk~a~~l~~d~~~~~al~~~~~~~~~~v~HPKl~~l~eilke~~~k~~~~RvIVFT~yRdTae~i~~~L 386 (542)
T COG1111 307 EKLEEEATKGGSKAAKSLLADPYFKRALRLLIRADESGVEHPKLEKLREILKEQLEKNGDSRVIVFTEYRDTAEEIVNFL 386 (542)
T ss_pred HHHHHHhcccchHHHHHHhcChhhHHHHHHHHHhccccCCCccHHHHHHHHHHHHhcCCCceEEEEehhHhHHHHHHHHH
Confidence 0000000 00000 0 001111247899999999999998888899999999999999999999
Q ss_pred hhhcCCCCCCChhHHHhhhhccceeeecCCCCHHHHHHHHHhhhcCCCcEEEeecccccCCCCCCCcEEEEeCCCCChhH
Q 010357 340 SEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEATE 419 (512)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~v~~l~g~~~~~~r~~~~~~f~~~~~~vLvaT~~~~~Gldip~~~~VI~~~~p~s~~~ 419 (512)
...+.... -.|.|-...-...+|++.++.++++.|++|+.+|||||+++++|+|+|.+++||.|++..|+..
T Consensus 387 ~~~~~~~~--------~rFiGQa~r~~~~GMsQkeQ~eiI~~Fr~Ge~nVLVaTSVgEEGLDIp~vDlVifYEpvpSeIR 458 (542)
T COG1111 387 KKIGIKAR--------VRFIGQASREGDKGMSQKEQKEIIDQFRKGEYNVLVATSVGEEGLDIPEVDLVIFYEPVPSEIR 458 (542)
T ss_pred HhcCCcce--------eEEeeccccccccccCHHHHHHHHHHHhcCCceEEEEcccccccCCCCcccEEEEecCCcHHHH
Confidence 98743210 0000101111235899999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhcccCCCCccEEEecCcc
Q 010357 420 YVHRVGRTARLGERGDSLLFLQPV 443 (512)
Q Consensus 420 ~~Q~~GRagR~g~~g~~~~~~~~~ 443 (512)
++||.||+||. +.|.+++++..+
T Consensus 459 ~IQR~GRTGR~-r~Grv~vLvt~g 481 (542)
T COG1111 459 SIQRKGRTGRK-RKGRVVVLVTEG 481 (542)
T ss_pred HHHhhCccccC-CCCeEEEEEecC
Confidence 99999999998 889999998876
No 47
>PRK01172 ski2-like helicase; Provisional
Probab=100.00 E-value=1.5e-43 Score=369.54 Aligned_cols=367 Identities=20% Similarity=0.245 Sum_probs=259.8
Q ss_pred CCcccCCCCHHHHHHHHHhcCCCCCcHHHHHHHHHhhcCCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEE
Q 010357 18 CSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFAL 97 (512)
Q Consensus 18 ~~~~~~~l~~~~~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~l 97 (512)
..|+++++++.+.+.+.+ .+|. ++++|.++++.+.+++++++++|||||||+++.+++++.+.. +.+++
T Consensus 1 ~~~~~~~l~~~~~~~~~~-~~~~-l~~~Q~~ai~~l~~~~nvlv~apTGSGKTl~a~lail~~l~~---------~~k~v 69 (674)
T PRK01172 1 MKISDLGYDDEFLNLFTG-NDFE-LYDHQRMAIEQLRKGENVIVSVPTAAGKTLIAYSAIYETFLA---------GLKSI 69 (674)
T ss_pred CcHhhcCCCHHHHHHHhh-CCCC-CCHHHHHHHHHHhcCCcEEEECCCCchHHHHHHHHHHHHHHh---------CCcEE
Confidence 368899999999999954 5887 999999999999999999999999999999999999988765 56799
Q ss_pred EEcCcHHHHHHHHHHHHHHHhhcCCcceEEEeCCCchHHHHHHHcCCCCEEEeCChHHHHHHhhcCCCcCCceeEEEEcc
Q 010357 98 VLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDE 177 (512)
Q Consensus 98 il~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lV~DE 177 (512)
+++|+++|+.|+++.+..+.. .+ ..+....|+...... ..+..+|+|+||+++..++.+. ...+.++++||+||
T Consensus 70 ~i~P~raLa~q~~~~~~~l~~-~g-~~v~~~~G~~~~~~~---~~~~~dIiv~Tpek~~~l~~~~-~~~l~~v~lvViDE 143 (674)
T PRK01172 70 YIVPLRSLAMEKYEELSRLRS-LG-MRVKISIGDYDDPPD---FIKRYDVVILTSEKADSLIHHD-PYIINDVGLIVADE 143 (674)
T ss_pred EEechHHHHHHHHHHHHHHhh-cC-CeEEEEeCCCCCChh---hhccCCEEEECHHHHHHHHhCC-hhHHhhcCEEEEec
Confidence 999999999999999987542 33 344555555443221 2246799999999998887663 33467899999999
Q ss_pred hhHHHhcCchHHHHHHHHHhccCCCCCCCCCCcccccceeEEEEEEecchhhHHHHHhhcCCCeEEccCCCcCCCCcccc
Q 010357 178 ADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLPEDKSHV 257 (512)
Q Consensus 178 ah~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (512)
+|.+.+.+++..++.++..++... ...|++++|||+++. ..+..+..... +.......+......
T Consensus 144 aH~l~d~~rg~~le~ll~~~~~~~------------~~~riI~lSATl~n~-~~la~wl~~~~--~~~~~r~vpl~~~i~ 208 (674)
T PRK01172 144 IHIIGDEDRGPTLETVLSSARYVN------------PDARILALSATVSNA-NELAQWLNASL--IKSNFRPVPLKLGIL 208 (674)
T ss_pred chhccCCCccHHHHHHHHHHHhcC------------cCCcEEEEeCccCCH-HHHHHHhCCCc--cCCCCCCCCeEEEEE
Confidence 999988889999998887765321 168999999999864 44444432211 111111100000000
Q ss_pred ccCCcccchhhhccCCCccccccccccccccceeeeEEEecCCchHHHHHHHHHhhhccccCceEEEEeecchhhhhHHH
Q 010357 258 RFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYS 337 (512)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~ 337 (512)
.. ...+. .........+...+.+.. ..++++||||++++.++.++.
T Consensus 209 ~~-------------------------------~~~~~-~~~~~~~~~~~~~i~~~~--~~~~~vLVF~~sr~~~~~~a~ 254 (674)
T PRK01172 209 YR-------------------------------KRLIL-DGYERSQVDINSLIKETV--NDGGQVLVFVSSRKNAEDYAE 254 (674)
T ss_pred ec-------------------------------Ceeee-cccccccccHHHHHHHHH--hCCCcEEEEeccHHHHHHHHH
Confidence 00 00000 000000111233344332 346799999999999999999
Q ss_pred hhhhhcCCCC---------CCChhHHHhhhhccceeeecCCCCHHHHHHHHHhhhcCCCcEEEeecccccCCCCCCCcEE
Q 010357 338 LLSEFQWSPH---------SQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCI 408 (512)
Q Consensus 338 ~l~~~~~~~~---------~~~~~~~~~~~~~~~v~~l~g~~~~~~r~~~~~~f~~~~~~vLvaT~~~~~Gldip~~~~V 408 (512)
.|........ ...+..+...+ ..++.++||+|+.++|..+++.|++|.++|||||+++++|+|+|+..+|
T Consensus 255 ~L~~~~~~~~~~~~~~~~~~~~~~~L~~~l-~~gv~~~hagl~~~eR~~ve~~f~~g~i~VLvaT~~la~Gvnipa~~VI 333 (674)
T PRK01172 255 MLIQHFPEFNDFKVSSENNNVYDDSLNEML-PHGVAFHHAGLSNEQRRFIEEMFRNRYIKVIVATPTLAAGVNLPARLVI 333 (674)
T ss_pred HHHHhhhhcccccccccccccccHHHHHHH-hcCEEEecCCCCHHHHHHHHHHHHcCCCeEEEecchhhccCCCcceEEE
Confidence 9876532211 11122333333 4679999999999999999999999999999999999999999986555
Q ss_pred EEeC---------CCCChhHHHHhhhhcccCCC--CccEEEecCccc-hhHHHHHH
Q 010357 409 IQYD---------SAGEATEYVHRVGRTARLGE--RGDSLLFLQPVE-MDYLQDLE 452 (512)
Q Consensus 409 I~~~---------~p~s~~~~~Q~~GRagR~g~--~g~~~~~~~~~~-~~~~~~l~ 452 (512)
| .+ .|.+..+|.||+|||||.|. .|.+++++...+ .+.++.+.
T Consensus 334 I-~~~~~~~~~~~~~~s~~~~~Qm~GRAGR~g~d~~g~~~i~~~~~~~~~~~~~~l 388 (674)
T PRK01172 334 V-RDITRYGNGGIRYLSNMEIKQMIGRAGRPGYDQYGIGYIYAASPASYDAAKKYL 388 (674)
T ss_pred E-cCceEeCCCCceeCCHHHHHHHhhcCCCCCCCCcceEEEEecCcccHHHHHHHH
Confidence 5 33 35688899999999999985 566777765433 45555544
No 48
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=100.00 E-value=9.6e-44 Score=345.92 Aligned_cols=337 Identities=21% Similarity=0.317 Sum_probs=256.6
Q ss_pred HHHHHHHHhcCCCCCcHHHHHHHHHhhcCCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcHHHHH
Q 010357 28 TLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCL 107 (512)
Q Consensus 28 ~~~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~ 107 (512)
.+...|++.||+..+|+.|.+++..+++++++++..|||+|||+||.+|++-. .+.+|+|+|..+|..
T Consensus 4 ~~~~~L~~~fGy~~FR~gQ~evI~~~l~g~d~lvvmPTGgGKSlCyQiPAll~------------~G~TLVVSPLiSLM~ 71 (590)
T COG0514 4 EAQQVLKQVFGYASFRPGQQEIIDALLSGKDTLVVMPTGGGKSLCYQIPALLL------------EGLTLVVSPLISLMK 71 (590)
T ss_pred HHHHHHHHHhCccccCCCHHHHHHHHHcCCcEEEEccCCCCcchHhhhHHHhc------------CCCEEEECchHHHHH
Confidence 45577888999999999999999999999999999999999999999999764 346999999999999
Q ss_pred HHHHHHHHHHhhcCCcceEEEeCCCch---HHHHHHHc-CCCCEEEeCChHHHHHHhhcCCCcCCceeEEEEcchhHHHh
Q 010357 108 QVYEILHKLLHRFHWIVPGYVMGGENR---SKEKARLR-KGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILE 183 (512)
Q Consensus 108 q~~~~~~~~~~~~~~~~~~~~~~g~~~---~~~~~~~~-~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lV~DEah~l~~ 183 (512)
++.+.+...+ +....+...-+. ......+. ...++++.+||++..-... ..+....+.++++||||++++
T Consensus 72 DQV~~l~~~G-----i~A~~lnS~l~~~e~~~v~~~l~~g~~klLyisPErl~~~~f~-~~L~~~~i~l~vIDEAHCiSq 145 (590)
T COG0514 72 DQVDQLEAAG-----IRAAYLNSTLSREERQQVLNQLKSGQLKLLYISPERLMSPRFL-ELLKRLPISLVAIDEAHCISQ 145 (590)
T ss_pred HHHHHHHHcC-----ceeehhhcccCHHHHHHHHHHHhcCceeEEEECchhhcChHHH-HHHHhCCCceEEechHHHHhh
Confidence 9999988864 222222222222 22223333 3489999999998543221 111234788999999999999
Q ss_pred cC--chHHHHHHHHHhccCCCCCCCCCCcccccceeEEEEEEecchhhHHHHH--hhcCCCeEEccCCCcCCCCcccccc
Q 010357 184 LG--FGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAK--ISLETPVLIGLDEKKLPEDKSHVRF 259 (512)
Q Consensus 184 ~~--~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (512)
|| |.+.+..+-....... +..++.+|||-++.+..... +.+..+..+......
T Consensus 146 WGhdFRP~Y~~lg~l~~~~~-------------~~p~~AlTATA~~~v~~DI~~~L~l~~~~~~~~sfdR---------- 202 (590)
T COG0514 146 WGHDFRPDYRRLGRLRAGLP-------------NPPVLALTATATPRVRDDIREQLGLQDANIFRGSFDR---------- 202 (590)
T ss_pred cCCccCHhHHHHHHHHhhCC-------------CCCEEEEeCCCChHHHHHHHHHhcCCCcceEEecCCC----------
Confidence 97 7777777766654322 67899999998877655443 333444332221110
Q ss_pred CCcccchhhhccCCCccccccccccccccceeeeEEEe-cCCchHHHHHHHHHhhhccccCceEEEEeecchhhhhHHHh
Q 010357 260 GSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKV-PCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSL 338 (512)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~k~~~l~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~ 338 (512)
.++.-..... ....+.. ++.. ......+..||||.|++.++.+++.
T Consensus 203 ----------------------------pNi~~~v~~~~~~~~q~~----fi~~-~~~~~~~~GIIYc~sRk~~E~ia~~ 249 (590)
T COG0514 203 ----------------------------PNLALKVVEKGEPSDQLA----FLAT-VLPQLSKSGIIYCLTRKKVEELAEW 249 (590)
T ss_pred ----------------------------chhhhhhhhcccHHHHHH----HHHh-hccccCCCeEEEEeeHHhHHHHHHH
Confidence 0111111111 1112222 3332 1134567899999999999999999
Q ss_pred hhhhcCCCCCCChhHHHhhhhccceeeecCCCCHHHHHHHHHhhhcCCCcEEEeecccccCCCCCCCcEEEEeCCCCChh
Q 010357 339 LSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEAT 418 (512)
Q Consensus 339 l~~~~~~~~~~~~~~~~~~~~~~~v~~l~g~~~~~~r~~~~~~f~~~~~~vLvaT~~~~~Gldip~~~~VI~~~~p~s~~ 418 (512)
|... ++.+..|||+|+.++|+.+.++|..++..|+|||.++++|||.|++.+||||+.|.|.+
T Consensus 250 L~~~-----------------g~~a~~YHaGl~~~eR~~~q~~f~~~~~~iiVAT~AFGMGIdKpdVRfViH~~lP~s~E 312 (590)
T COG0514 250 LRKN-----------------GISAGAYHAGLSNEERERVQQAFLNDEIKVMVATNAFGMGIDKPDVRFVIHYDLPGSIE 312 (590)
T ss_pred HHHC-----------------CCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccCccCCCCceEEEEecCCCCHH
Confidence 9998 88999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhcccCCCCccEEEecCccchhHHHHHHHcC
Q 010357 419 EYVHRVGRTARLGERGDSLLFLQPVEMDYLQDLEKHG 455 (512)
Q Consensus 419 ~~~Q~~GRagR~g~~g~~~~~~~~~~~~~~~~l~~~~ 455 (512)
+|.|.+|||||+|.+..|++++++.|..+.+.+.+..
T Consensus 313 sYyQE~GRAGRDG~~a~aill~~~~D~~~~~~~i~~~ 349 (590)
T COG0514 313 SYYQETGRAGRDGLPAEAILLYSPEDIRWQRYLIEQS 349 (590)
T ss_pred HHHHHHhhccCCCCcceEEEeeccccHHHHHHHHHhh
Confidence 9999999999999999999999999988777776653
No 49
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=100.00 E-value=4.6e-43 Score=362.37 Aligned_cols=344 Identities=22% Similarity=0.289 Sum_probs=248.7
Q ss_pred CHHHHHHHHHhcCCCCCcHHHHHHHHHhhcC------CCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEE
Q 010357 26 HSTLCDQLRERLGFEAPTKVQAQAIPVILSG------RHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVL 99 (512)
Q Consensus 26 ~~~~~~~l~~~~~~~~~~~~Q~~~~~~~~~~------~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil 99 (512)
+..+.+.+.+.++|. ||++|++|++.+.++ .+.+++||||||||++|+++++..+.. +.+++|+
T Consensus 247 ~~~~~~~~~~~l~f~-lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~~---------g~q~lil 316 (681)
T PRK10917 247 DGELLKKFLASLPFE-LTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIEA---------GYQAALM 316 (681)
T ss_pred ChHHHHHHHHhCCCC-CCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHHc---------CCeEEEE
Confidence 356777777889997 999999999999876 478999999999999999999988755 7789999
Q ss_pred cCcHHHHHHHHHHHHHHHhhcCCcceEEEeCCCchHHH---HHHHcC-CCCEEEeCChHHHHHHhhcCCCcCCceeEEEE
Q 010357 100 VPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKE---KARLRK-GISILVATPGRLLDHLKHTSSFLHTNLRWIIF 175 (512)
Q Consensus 100 ~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~g~~~~~~---~~~~~~-~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lV~ 175 (512)
+||++|+.|+++.++.++..++ ..+..+.|+...... ...+.. .++|+|+||+.+.+ ...+.++++||+
T Consensus 317 aPT~~LA~Q~~~~l~~l~~~~~-i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~------~v~~~~l~lvVI 389 (681)
T PRK10917 317 APTEILAEQHYENLKKLLEPLG-IRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQD------DVEFHNLGLVII 389 (681)
T ss_pred eccHHHHHHHHHHHHHHHhhcC-cEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcc------cchhcccceEEE
Confidence 9999999999999999987765 556777777764333 333444 49999999987743 233568999999
Q ss_pred cchhHHHhcCchHHHHHHHHHhccCCCCCCCCCCcccccceeEEEEEEecchhhHHHHHhhcCCCeEEccCCCcCCCCcc
Q 010357 176 DEADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLPEDKS 255 (512)
Q Consensus 176 DEah~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (512)
||+|++ +......+..... .+++++||||+.+...........+...+...+..
T Consensus 390 DE~Hrf-----g~~qr~~l~~~~~---------------~~~iL~~SATp~prtl~~~~~g~~~~s~i~~~p~~------ 443 (681)
T PRK10917 390 DEQHRF-----GVEQRLALREKGE---------------NPHVLVMTATPIPRTLAMTAYGDLDVSVIDELPPG------ 443 (681)
T ss_pred echhhh-----hHHHHHHHHhcCC---------------CCCEEEEeCCCCHHHHHHHHcCCCceEEEecCCCC------
Confidence 999984 3333444433222 57899999998765443332221122111100000
Q ss_pred ccccCCcccchhhhccCCCccccccccccccccceeeeEEEecCCchHHHHHHHHHhhhccccCceEEEEeecchhhh--
Q 010357 256 HVRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVD-- 333 (512)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~lvf~~~~~~~~-- 333 (512)
...+.... . ...+...+.+.+.... ..+.+++|||+.++..+
T Consensus 444 -------------------------------r~~i~~~~--~-~~~~~~~~~~~i~~~~--~~g~q~~v~~~~ie~s~~l 487 (681)
T PRK10917 444 -------------------------------RKPITTVV--I-PDSRRDEVYERIREEI--AKGRQAYVVCPLIEESEKL 487 (681)
T ss_pred -------------------------------CCCcEEEE--e-CcccHHHHHHHHHHHH--HcCCcEEEEEcccccccch
Confidence 00111111 1 1233344555555543 34679999999765443
Q ss_pred ------hHHHhhhhhcCCCCCCChhHHHhhhhccceeeecCCCCHHHHHHHHHhhhcCCCcEEEeecccccCCCCCCCcE
Q 010357 334 ------FHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKC 407 (512)
Q Consensus 334 ------~l~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~l~g~~~~~~r~~~~~~f~~~~~~vLvaT~~~~~Gldip~~~~ 407 (512)
.+++.|... +++.++..+||+|+..+|+.++++|++|+.+|||||+++++|+|+|++++
T Consensus 488 ~~~~~~~~~~~L~~~---------------~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~GiDip~v~~ 552 (681)
T PRK10917 488 DLQSAEETYEELQEA---------------FPELRVGLLHGRMKPAEKDAVMAAFKAGEIDILVATTVIEVGVDVPNATV 552 (681)
T ss_pred hHHHHHHHHHHHHHH---------------CCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECcceeeCcccCCCcE
Confidence 444444433 33578999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCC-ChhHHHHhhhhcccCCCCccEEEecC-c---cchhHHHHHHH--cCCCCCccCh
Q 010357 408 IIQYDSAG-EATEYVHRVGRTARLGERGDSLLFLQ-P---VEMDYLQDLEK--HGVSLTEYPL 463 (512)
Q Consensus 408 VI~~~~p~-s~~~~~Q~~GRagR~g~~g~~~~~~~-~---~~~~~~~~l~~--~~~~~~~~~~ 463 (512)
||+++.|. +...+.|++||+||.|..|.|+++++ + ...+.++.+.+ .|..+.+.++
T Consensus 553 VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~ill~~~~~~~~~~~rl~~~~~~~dgf~iae~dl 615 (681)
T PRK10917 553 MVIENAERFGLAQLHQLRGRVGRGAAQSYCVLLYKDPLSETARERLKIMRETNDGFVIAEKDL 615 (681)
T ss_pred EEEeCCCCCCHHHHHHHhhcccCCCCceEEEEEECCCCChhHHHHHHHHHHhcchHHHHHHhH
Confidence 99999987 57888999999999999999999995 4 23455666655 2444444433
No 50
>PRK10689 transcription-repair coupling factor; Provisional
Probab=100.00 E-value=4.5e-42 Score=366.64 Aligned_cols=334 Identities=20% Similarity=0.235 Sum_probs=248.3
Q ss_pred CCHHHHHHHHHhcCCCCCcHHHHHHHHHhhcC------CCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEE
Q 010357 25 LHSTLCDQLRERLGFEAPTKVQAQAIPVILSG------RHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALV 98 (512)
Q Consensus 25 l~~~~~~~l~~~~~~~~~~~~Q~~~~~~~~~~------~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~li 98 (512)
.+......+.+.++|. ||+.|++|++.++++ ++.+++||||+|||.+|+.++...+.. +.+++|
T Consensus 585 ~~~~~~~~~~~~~~~~-~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~~~---------g~qvlv 654 (1147)
T PRK10689 585 HDREQYQLFCDSFPFE-TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVEN---------HKQVAV 654 (1147)
T ss_pred CCHHHHHHHHHhCCCC-CCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHHHc---------CCeEEE
Confidence 3456666676889995 999999999999986 799999999999999999888776543 778999
Q ss_pred EcCcHHHHHHHHHHHHHHHhhcCCcceEEEeCCCchHHHHHHH---c-CCCCEEEeCChHHHHHHhhcCCCcCCceeEEE
Q 010357 99 LVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARL---R-KGISILVATPGRLLDHLKHTSSFLHTNLRWII 174 (512)
Q Consensus 99 l~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~-~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lV 174 (512)
++||++|+.|+++.+...+...+ ..+..+.++.........+ . +.++|+|+||+.+. ....+.+++++|
T Consensus 655 LvPT~eLA~Q~~~~f~~~~~~~~-v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL~------~~v~~~~L~lLV 727 (1147)
T PRK10689 655 LVPTTLLAQQHYDNFRDRFANWP-VRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQ------SDVKWKDLGLLI 727 (1147)
T ss_pred EeCcHHHHHHHHHHHHHhhccCC-ceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHHh------CCCCHhhCCEEE
Confidence 99999999999999998776543 3445566666655544433 2 45899999997542 233456899999
Q ss_pred EcchhHHHhcCchHHHHHHHHHhccCCCCCCCCCCcccccceeEEEEEEecchhhHHHHHhhcCCCeEEccCCCcCCCCc
Q 010357 175 FDEADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLPEDK 254 (512)
Q Consensus 175 ~DEah~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (512)
+||+|++ +......+..++. ..+++++|||+.+....+....+.++..+...+...
T Consensus 728 IDEahrf-----G~~~~e~lk~l~~---------------~~qvLl~SATpiprtl~l~~~gl~d~~~I~~~p~~r---- 783 (1147)
T PRK10689 728 VDEEHRF-----GVRHKERIKAMRA---------------DVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARR---- 783 (1147)
T ss_pred Eechhhc-----chhHHHHHHhcCC---------------CCcEEEEcCCCCHHHHHHHHhhCCCcEEEecCCCCC----
Confidence 9999995 3333444454443 789999999998877766666666666654332210
Q ss_pred cccccCCcccchhhhccCCCccccccccccccccceeeeEEEecCCchHHHHHHHHHhhhccccCceEEEEeecchhhhh
Q 010357 255 SHVRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDF 334 (512)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~lvf~~~~~~~~~ 334 (512)
..+........ ........+..+ ..+++++|||++++.++.
T Consensus 784 ---------------------------------~~v~~~~~~~~---~~~~k~~il~el---~r~gqv~vf~n~i~~ie~ 824 (1147)
T PRK10689 784 ---------------------------------LAVKTFVREYD---SLVVREAILREI---LRGGQVYYLYNDVENIQK 824 (1147)
T ss_pred ---------------------------------CCceEEEEecC---cHHHHHHHHHHH---hcCCeEEEEECCHHHHHH
Confidence 01111111111 111112223332 235799999999999999
Q ss_pred HHHhhhhhcCCCCCCChhHHHhhhhccceeeecCCCCHHHHHHHHHhhhcCCCcEEEeecccccCCCCCCCcEEEEeCCC
Q 010357 335 HYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSA 414 (512)
Q Consensus 335 l~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~l~g~~~~~~r~~~~~~f~~~~~~vLvaT~~~~~Gldip~~~~VI~~~~p 414 (512)
+++.|... +++.++..+||+|+..+|+.++.+|++|+.+|||||+++++|+|+|++++||..+..
T Consensus 825 la~~L~~~---------------~p~~~v~~lHG~m~q~eRe~im~~Fr~Gk~~VLVaTdIierGIDIP~v~~VIi~~ad 889 (1147)
T PRK10689 825 AAERLAEL---------------VPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERAD 889 (1147)
T ss_pred HHHHHHHh---------------CCCCcEEEEeCCCCHHHHHHHHHHHHhcCCCEEEECchhhcccccccCCEEEEecCC
Confidence 99999875 336789999999999999999999999999999999999999999999999965543
Q ss_pred -CChhHHHHhhhhcccCCCCccEEEecCcc------chhHHHHHHH
Q 010357 415 -GEATEYVHRVGRTARLGERGDSLLFLQPV------EMDYLQDLEK 453 (512)
Q Consensus 415 -~s~~~~~Q~~GRagR~g~~g~~~~~~~~~------~~~~~~~l~~ 453 (512)
.+...|.||+||+||.|+.|.|++++... ..+.++.+.+
T Consensus 890 ~fglaq~~Qr~GRvGR~g~~g~a~ll~~~~~~~~~~~~~rl~~~~~ 935 (1147)
T PRK10689 890 HFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIAS 935 (1147)
T ss_pred CCCHHHHHHHhhccCCCCCceEEEEEeCCCcccCHHHHHHHHHHHH
Confidence 35678999999999999999999987542 2444555554
No 51
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=100.00 E-value=6.1e-42 Score=352.01 Aligned_cols=336 Identities=19% Similarity=0.281 Sum_probs=236.1
Q ss_pred HHHHHHHHHhcCCCCCcHHHHHHHHHhhcC------CCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEc
Q 010357 27 STLCDQLRERLGFEAPTKVQAQAIPVILSG------RHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLV 100 (512)
Q Consensus 27 ~~~~~~l~~~~~~~~~~~~Q~~~~~~~~~~------~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~ 100 (512)
..+...+.+.++|. ||+.|++|++.++++ .+.+++||||||||++|+++++..+.. +.++++++
T Consensus 222 ~~~~~~~~~~lpf~-lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~~---------g~qvlila 291 (630)
T TIGR00643 222 EELLTKFLASLPFK-LTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIEA---------GYQVALMA 291 (630)
T ss_pred hHHHHHHHHhCCCC-CCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHHc---------CCcEEEEC
Confidence 45555566788995 999999999999865 258999999999999999999988765 77899999
Q ss_pred CcHHHHHHHHHHHHHHHhhcCCcceEEEeCCCchHH---HHHHHc-CCCCEEEeCChHHHHHHhhcCCCcCCceeEEEEc
Q 010357 101 PTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSK---EKARLR-KGISILVATPGRLLDHLKHTSSFLHTNLRWIIFD 176 (512)
Q Consensus 101 Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~g~~~~~---~~~~~~-~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lV~D 176 (512)
||++|+.|+++.+.+++..++ ..+..++|+..... ....+. +.++|+|+||+.+.+. ..+.++++||+|
T Consensus 292 PT~~LA~Q~~~~~~~l~~~~g-i~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~~------~~~~~l~lvVID 364 (630)
T TIGR00643 292 PTEILAEQHYNSLRNLLAPLG-IEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQEK------VEFKRLALVIID 364 (630)
T ss_pred CHHHHHHHHHHHHHHHhcccC-cEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhcc------ccccccceEEEe
Confidence 999999999999999987665 45666777766544 233333 3489999999887542 335689999999
Q ss_pred chhHHHhcCchHHHHHHHHHhccCCCCCCCCCCcccccceeEEEEEEecchhhHHHHHhhcCCCeEEccCCCcCCCCccc
Q 010357 177 EADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLPEDKSH 256 (512)
Q Consensus 177 Eah~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (512)
|+|++ +......+...... ...+++++||||+.+..........-+...+...+.
T Consensus 365 EaH~f-----g~~qr~~l~~~~~~------------~~~~~~l~~SATp~prtl~l~~~~~l~~~~i~~~p~-------- 419 (630)
T TIGR00643 365 EQHRF-----GVEQRKKLREKGQG------------GFTPHVLVMSATPIPRTLALTVYGDLDTSIIDELPP-------- 419 (630)
T ss_pred chhhc-----cHHHHHHHHHhccc------------CCCCCEEEEeCCCCcHHHHHHhcCCcceeeeccCCC--------
Confidence 99984 33322222222110 015689999999866433322111101111000000
Q ss_pred cccCCcccchhhhccCCCccccccccccccccceeeeEEEecCCchHHHHHHHHHhhhccccCceEEEEeecchh-----
Q 010357 257 VRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDA----- 331 (512)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~lvf~~~~~~----- 331 (512)
....+.... ... .....+...+.+.+ ..+.+++|||+..+.
T Consensus 420 -----------------------------~r~~i~~~~--~~~-~~~~~~~~~i~~~l--~~g~q~~v~~~~i~~s~~~~ 465 (630)
T TIGR00643 420 -----------------------------GRKPITTVL--IKH-DEKDIVYEFIEEEI--AKGRQAYVVYPLIEESEKLD 465 (630)
T ss_pred -----------------------------CCCceEEEE--eCc-chHHHHHHHHHHHH--HhCCcEEEEEccccccccch
Confidence 000011111 112 22244555555432 346799999998754
Q ss_pred ---hhhHHHhhhhhcCCCCCCChhHHHhhhhccceeeecCCCCHHHHHHHHHhhhcCCCcEEEeecccccCCCCCCCcEE
Q 010357 332 ---VDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCI 408 (512)
Q Consensus 332 ---~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~l~g~~~~~~r~~~~~~f~~~~~~vLvaT~~~~~Gldip~~~~V 408 (512)
++.+++.|.+. +++..+..+||+|+.++|..+++.|++|+.+|||||+++++|+|+|++++|
T Consensus 466 ~~~a~~~~~~L~~~---------------~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~GvDiP~v~~V 530 (630)
T TIGR00643 466 LKAAEALYERLKKA---------------FPKYNVGLLHGRMKSDEKEAVMEEFREGEVDILVATTVIEVGVDVPNATVM 530 (630)
T ss_pred HHHHHHHHHHHHhh---------------CCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECceeecCcccCCCcEE
Confidence 33444444432 347889999999999999999999999999999999999999999999999
Q ss_pred EEeCCCC-ChhHHHHhhhhcccCCCCccEEEec-Cccc---hhHHHHHHH
Q 010357 409 IQYDSAG-EATEYVHRVGRTARLGERGDSLLFL-QPVE---MDYLQDLEK 453 (512)
Q Consensus 409 I~~~~p~-s~~~~~Q~~GRagR~g~~g~~~~~~-~~~~---~~~~~~l~~ 453 (512)
|+++.|. +...|.|++||+||.|+.|.|++++ ++.. .+.++.+.+
T Consensus 531 Ii~~~~r~gls~lhQ~~GRvGR~g~~g~~il~~~~~~~~~~~~rl~~~~~ 580 (630)
T TIGR00643 531 VIEDAERFGLSQLHQLRGRVGRGDHQSYCLLVYKNPKSESAKKRLRVMAD 580 (630)
T ss_pred EEeCCCcCCHHHHHHHhhhcccCCCCcEEEEEECCCCCHHHHHHHHHHHh
Confidence 9999986 6788999999999999999999998 3333 333444443
No 52
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=100.00 E-value=6e-42 Score=347.55 Aligned_cols=335 Identities=18% Similarity=0.179 Sum_probs=242.2
Q ss_pred HHHHHHHHhcCCCCCcHHHHHHHHHhhcCC-CEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcHHHH
Q 010357 28 TLCDQLRERLGFEAPTKVQAQAIPVILSGR-HVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELC 106 (512)
Q Consensus 28 ~~~~~l~~~~~~~~~~~~Q~~~~~~~~~~~-~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~ 106 (512)
++.+.+.+.+||+ |+|||.++++.+++|+ ++++++|||||||.++.++++.. ... .....++++++|+|+|+
T Consensus 3 ~f~~ff~~~~G~~-PtpiQ~~~i~~il~G~~~v~~~apTGSGKTaa~aafll~~-~~~-----~~~~~rLv~~vPtReLa 75 (844)
T TIGR02621 3 KFDEWYQGLHGYS-PFPWQLSLAERFVAGQPPESCSTPTGLGKTSIIAAWLLAV-EIG-----AKVPRRLVYVVNRRTVV 75 (844)
T ss_pred hHHHHHHHHhCCC-CCHHHHHHHHHHHcCCCcceEecCCCCcccHHHHHhhccc-ccc-----ccccceEEEeCchHHHH
Confidence 4566777778998 9999999999999998 57778999999998766554422 110 11234466688999999
Q ss_pred HHHHHHHHHHHhhcC----------------------CcceEEEeCCCchHHHHHHHcCCCCEEEeCChHHHHHHhh---
Q 010357 107 LQVYEILHKLLHRFH----------------------WIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKH--- 161 (512)
Q Consensus 107 ~q~~~~~~~~~~~~~----------------------~~~~~~~~~g~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~--- 161 (512)
.|+++.+..+...+. .+.+..++||.....++..+..+++|||+|++.+..-...
T Consensus 76 ~Qi~~~~~~~~k~l~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~~~l~~~p~IIVgT~D~i~sr~L~~gY 155 (844)
T TIGR02621 76 DQVTEEAEKIGERLPDVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDEWMLDPHRPAVIVGTVDMIGSRLLFSGY 155 (844)
T ss_pred HHHHHHHHHHHHHhcccchhhhhhhhhhccccccccCCeEEEEEECCCChHHHHHhcCCCCcEEEECHHHHcCCcccccc
Confidence 999999999987652 2556778999999999999999999999996544221100
Q ss_pred -----cCCC---cCCceeEEEEcchhHHHhcCchHHHHHHHHHhccCCCCCCCCCCcccccceeEEEEEEecchhhHHHH
Q 010357 162 -----TSSF---LHTNLRWIIFDEADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLA 233 (512)
Q Consensus 162 -----~~~~---~~~~~~~lV~DEah~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~ 233 (512)
...+ .++++.++|+|||| ++.+|...+..|+..+..... ..+.|+++||||++.....+.
T Consensus 156 g~~~~~~pi~ag~L~~v~~LVLDEAD--Ld~gF~~~l~~Il~~l~rp~~----------~rprQtLLFSAT~p~ei~~l~ 223 (844)
T TIGR02621 156 GCGFKSRPLHAGFLGQDALIVHDEAH--LEPAFQELLKQIMNEQQRPPD----------FLPLRVVELTATSRTDGPDRT 223 (844)
T ss_pred ccccccccchhhhhccceEEEEehhh--hccccHHHHHHHHHhcccCcc----------cccceEEEEecCCCccHHHHH
Confidence 0000 25678999999999 577899999999987521000 003699999999998777666
Q ss_pred HhhcCCCeEEccCCCcCCCCccccccCCcccchhhhccCCCccccccccccccccceeeeEEEecCCchHHHHHHHHHhh
Q 010357 234 KISLETPVLIGLDEKKLPEDKSHVRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCGSRLAVLLSILKHL 313 (512)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~ 313 (512)
...+.++..+.+..... ...++.+ +.......|...+...+...
T Consensus 224 ~~~~~~p~~i~V~~~~l-----------------------------------~a~ki~q-~v~v~~e~Kl~~lv~~L~~l 267 (844)
T TIGR02621 224 TLLSAEDYKHPVLKKRL-----------------------------------AAKKIVK-LVPPSDEKFLSTMVKELNLL 267 (844)
T ss_pred HHHccCCceeecccccc-----------------------------------cccceEE-EEecChHHHHHHHHHHHHHH
Confidence 66655554433322110 0112222 22333334444444444433
Q ss_pred hccccCceEEEEeecchhhhhHHHhhhhhcCCCCCCChhHHHhhhhccceeeecCCCCHHHHH-----HHHHhhhc----
Q 010357 314 FDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRR-----TTFGAFKT---- 384 (512)
Q Consensus 314 ~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~l~g~~~~~~r~-----~~~~~f~~---- 384 (512)
+ ...++++|||||+++.++.+++.|... ++ ..+||+|++.+|. .++++|++
T Consensus 268 l-~e~g~~vLVF~NTv~~Aq~L~~~L~~~-----------------g~--~lLHG~m~q~dR~~~~~~~il~~Fk~~~~~ 327 (844)
T TIGR02621 268 M-KDSGGAILVFCRTVKHVRKVFAKLPKE-----------------KF--ELLTGTLRGAERDDLVKKEIFNRFLPQMLS 327 (844)
T ss_pred H-hhCCCcEEEEECCHHHHHHHHHHHHhc-----------------CC--eEeeCCCCHHHHhhHHHHHHHHHHhccccc
Confidence 3 234679999999999999999999875 43 7889999999999 88999987
Q ss_pred CC-------CcEEEeecccccCCCCCCCcEEEEeCCCCChhHHHHhhhhcccCCCCccE-EEec
Q 010357 385 EK-------KALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRVGRTARLGERGDS-LLFL 440 (512)
Q Consensus 385 ~~-------~~vLvaT~~~~~Gldip~~~~VI~~~~p~s~~~~~Q~~GRagR~g~~g~~-~~~~ 440 (512)
|. ..|||||+++++|+|++. ++||++..| .++|+||+||+||.|+.|.+ +.++
T Consensus 328 g~~~~~~~g~~ILVATdVaerGLDId~-d~VI~d~aP--~esyIQRiGRtgR~G~~~~~~i~vv 388 (844)
T TIGR02621 328 GSRARPQQGTVYLVCTSAGEVGVNISA-DHLVCDLAP--FESMQQRFGRVNRFGELQACQIAVV 388 (844)
T ss_pred cccccccccceEEeccchhhhcccCCc-ceEEECCCC--HHHHHHHhcccCCCCCCCCceEEEE
Confidence 43 679999999999999986 888887766 68999999999999986433 4444
No 53
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=100.00 E-value=1.6e-40 Score=356.15 Aligned_cols=349 Identities=19% Similarity=0.166 Sum_probs=225.8
Q ss_pred EEccCCChHhHHHHHHHHHHHhhcCCC----CCCCCCceEEEEcCcHHHHHHHHHHHHHHHhh-------c----CCcce
Q 010357 61 VNAATGTGKTVAYLAPIINHLQSYSPR----IDRSSGTFALVLVPTRELCLQVYEILHKLLHR-------F----HWIVP 125 (512)
Q Consensus 61 v~~pTGsGKT~~~~~~~~~~~~~~~~~----~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~-------~----~~~~~ 125 (512)
|++|||||||++|.+|++..+...... .....+.++|||+|+++|+.|+.+.++..+.. + ..+.+
T Consensus 1 V~APTGSGKTLAA~LpaL~~Ll~~~~~~~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V 80 (1490)
T PRK09751 1 VIAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRV 80 (1490)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHhcccccccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEE
Confidence 579999999999999999988754311 11124678999999999999999998753321 1 12456
Q ss_pred EEEeCCCchHHHHHHHcCCCCEEEeCChHHHHHHhhcCCCcCCceeEEEEcchhHHHhcCchHHHHHHHHHhccCCCCCC
Q 010357 126 GYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILGSRNIGSI 205 (512)
Q Consensus 126 ~~~~~g~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lV~DEah~l~~~~~~~~~~~i~~~~~~~~~~~~ 205 (512)
....|+.........+.+.++|+|+||++|..++.+.....++++++||+||+|.+.+..++.++...+.++....
T Consensus 81 ~vrtGDt~~~eR~rll~~ppdILVTTPEsL~~LLtsk~r~~L~~Vr~VIVDE~H~L~g~kRG~~Lel~LeRL~~l~---- 156 (1490)
T PRK09751 81 GIRTGDTPAQERSKLTRNPPDILITTPESLYLMLTSRARETLRGVETVIIDEVHAVAGSKRGAHLALSLERLDALL---- 156 (1490)
T ss_pred EEEECCCCHHHHHHHhcCCCCEEEecHHHHHHHHhhhhhhhhccCCEEEEecHHHhcccccccHHHHHHHHHHHhC----
Confidence 6677777666666666778999999999999887653334678999999999999998777877777776665421
Q ss_pred CCCCcccccceeEEEEEEecchhhHHHHHhhcC-CCeEEccCCCcCCCCccccccCCcccchhhhccCCCcccccccccc
Q 010357 206 GEGNEVSNVKRQNLLLSATLNEKVNHLAKISLE-TPVLIGLDEKKLPEDKSHVRFGSLESDVKEEVEHPSTTMRSTTEDF 284 (512)
Q Consensus 206 ~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (512)
+.+.|+|++|||+++. +.+.++... .+..+........... .+... .. +... .. ..
T Consensus 157 -------~~~~QrIgLSATI~n~-eevA~~L~g~~pv~Iv~~~~~r~~~l-~v~vp-~~-d~~~----~~-----~~--- 213 (1490)
T PRK09751 157 -------HTSAQRIGLSATVRSA-SDVAAFLGGDRPVTVVNPPAMRHPQI-RIVVP-VA-NMDD----VS-----SV--- 213 (1490)
T ss_pred -------CCCCeEEEEEeeCCCH-HHHHHHhcCCCCEEEECCCCCcccce-EEEEe-cC-chhh----cc-----cc---
Confidence 1268999999999874 445554432 3433321111100000 00000 00 0000 00 00
Q ss_pred ccccceeeeEEEecCCchHHHHH-HHHHhhhccccCceEEEEeecchhhhhHHHhhhhhcCCCC--CCChhHHHhh----
Q 010357 285 KLPAQLVQRYVKVPCGSRLAVLL-SILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPH--SQPDMELKQL---- 357 (512)
Q Consensus 285 ~~~~~~~~~~~~~~~~~k~~~l~-~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~--~~~~~~~~~~---- 357 (512)
.......... .........+. .++..+ ..+.++||||||+..++.++..|.+...... ..........
T Consensus 214 -~~~~~~~~~~-~r~~~i~~~v~~~il~~i---~~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~ 288 (1490)
T PRK09751 214 -ASGTGEDSHA-GREGSIWPYIETGILDEV---LRHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFEST 288 (1490)
T ss_pred -ccccccccch-hhhhhhhHHHHHHHHHHH---hcCCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhc
Confidence 0000000000 00001111111 222222 2357899999999999999999976532100 0000000000
Q ss_pred ----------hhccceeeecCCCCHHHHHHHHHhhhcCCCcEEEeecccccCCCCCCCcEEEEeCCCCChhHHHHhhhhc
Q 010357 358 ----------FLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRVGRT 427 (512)
Q Consensus 358 ----------~~~~~v~~l~g~~~~~~r~~~~~~f~~~~~~vLvaT~~~~~Gldip~~~~VI~~~~p~s~~~~~Q~~GRa 427 (512)
.....+..|||+|++++|..+++.|++|++++||||+++++|||++++++||+++.|.++.+|+||+||+
T Consensus 289 ~~~~~~~~~~~~~~ia~~HHGsLSkeeR~~IE~~fK~G~LrvLVATssLELGIDIg~VDlVIq~gsP~sVas~LQRiGRA 368 (1490)
T PRK09751 289 SGATSNRVQSSDVFIARSHHGSVSKEQRAITEQALKSGELRCVVATSSLELGIDMGAVDLVIQVATPLSVASGLQRIGRA 368 (1490)
T ss_pred cccchhccccccceeeeeccccCCHHHHHHHHHHHHhCCceEEEeCcHHHccCCcccCCEEEEeCCCCCHHHHHHHhCCC
Confidence 0012367899999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccC-CCCccEEEecC
Q 010357 428 ARL-GERGDSLLFLQ 441 (512)
Q Consensus 428 gR~-g~~g~~~~~~~ 441 (512)
||. |..+.++++..
T Consensus 369 GR~~gg~s~gli~p~ 383 (1490)
T PRK09751 369 GHQVGGVSKGLFFPR 383 (1490)
T ss_pred CCCCCCccEEEEEeC
Confidence 996 23344554433
No 54
>COG1204 Superfamily II helicase [General function prediction only]
Probab=100.00 E-value=1.7e-39 Score=332.83 Aligned_cols=369 Identities=22% Similarity=0.265 Sum_probs=265.7
Q ss_pred CCCCHHHHHHHHHhcCCCCCcHHHHHHHHHhh-cCCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcC
Q 010357 23 LGLHSTLCDQLRERLGFEAPTKVQAQAIPVIL-SGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVP 101 (512)
Q Consensus 23 ~~l~~~~~~~l~~~~~~~~~~~~Q~~~~~~~~-~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P 101 (512)
..+++.+...+ +..|+.++++.|++++.... +++|+++++|||||||+++++.++..+.. .+.+++|+||
T Consensus 14 ~~~~~~v~~i~-~~~~~~el~~~qq~av~~~~~~~~N~li~aPTgsGKTlIA~lai~~~l~~--------~~~k~vYivP 84 (766)
T COG1204 14 VKLDDRVLEIL-KGDGIDELFNPQQEAVEKGLLSDENVLISAPTGSGKTLIALLAILSTLLE--------GGGKVVYIVP 84 (766)
T ss_pred ccccHHHHHHh-ccCChHHhhHHHHHHhhccccCCCcEEEEcCCCCchHHHHHHHHHHHHHh--------cCCcEEEEeC
Confidence 34677777777 45588889999999997655 66999999999999999999999999876 2577999999
Q ss_pred cHHHHHHHHHHHHHHHhhcCCcceEEEeCCCchHHHHHHHcCCCCEEEeCChHHHHHHhhcCCCcCCceeEEEEcchhHH
Q 010357 102 TRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRI 181 (512)
Q Consensus 102 t~~L~~q~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lV~DEah~l 181 (512)
+++|+.|.++.++ .++.+| ..+...+|+....+ .....++|+|+|||++...+.+... ....+++||+||+|.+
T Consensus 85 lkALa~Ek~~~~~-~~~~~G-irV~~~TgD~~~~~---~~l~~~~ViVtT~EK~Dsl~R~~~~-~~~~V~lvViDEiH~l 158 (766)
T COG1204 85 LKALAEEKYEEFS-RLEELG-IRVGISTGDYDLDD---ERLARYDVIVTTPEKLDSLTRKRPS-WIEEVDLVVIDEIHLL 158 (766)
T ss_pred hHHHHHHHHHHhh-hHHhcC-CEEEEecCCcccch---hhhccCCEEEEchHHhhHhhhcCcc-hhhcccEEEEeeeeec
Confidence 9999999999999 444455 55566666655444 2235679999999999988877554 6678999999999998
Q ss_pred HhcCchHHHHHHHHHhccCCCCCCCCCCcccccceeEEEEEEecchhhHHHHHhhcCCCeEEccCCCcCCCCccccccCC
Q 010357 182 LELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLPEDKSHVRFGS 261 (512)
Q Consensus 182 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (512)
.+..+++.++.++.+.+..+. ..|++++|||+++.. .+..+...++......+.+. ..
T Consensus 159 ~d~~RG~~lE~iv~r~~~~~~------------~~rivgLSATlpN~~-evA~wL~a~~~~~~~rp~~l--~~------- 216 (766)
T COG1204 159 GDRTRGPVLESIVARMRRLNE------------LIRIVGLSATLPNAE-EVADWLNAKLVESDWRPVPL--RR------- 216 (766)
T ss_pred CCcccCceehhHHHHHHhhCc------------ceEEEEEeeecCCHH-HHHHHhCCcccccCCCCccc--cc-------
Confidence 888899999999998876421 479999999999854 45554444433222222211 00
Q ss_pred cccchhhhccCCCccccccccccccccceeeeEEEecCC------chHHHHHHHHHhhhccccCceEEEEeecchhhhhH
Q 010357 262 LESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCG------SRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFH 335 (512)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~k~~~l~~~l~~~~~~~~~~~~lvf~~~~~~~~~l 335 (512)
+......+...... .........+... ...++.++|||++++.+...
T Consensus 217 -------------------------~v~~~~~~~~~~~~~k~~~~~~~~~~~~~v~~~--~~~~~qvLvFv~sR~~a~~~ 269 (766)
T COG1204 217 -------------------------GVPYVGAFLGADGKKKTWPLLIDNLALELVLES--LAEGGQVLVFVHSRKEAEKT 269 (766)
T ss_pred -------------------------CCccceEEEEecCccccccccchHHHHHHHHHH--HhcCCeEEEEEecCchHHHH
Confidence 01111112222111 1233444444443 24578999999999999999
Q ss_pred HHhhhhhcCCC---------CC---C---------ChhHHHhhhhccceeeecCCCCHHHHHHHHHhhhcCCCcEEEeec
Q 010357 336 YSLLSEFQWSP---------HS---Q---------PDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTD 394 (512)
Q Consensus 336 ~~~l~~~~~~~---------~~---~---------~~~~~~~~~~~~~v~~l~g~~~~~~r~~~~~~f~~~~~~vLvaT~ 394 (512)
++.+....... .. . ....+.+.+ ..++.+||++|+.++|..+++.|++|.++||+||+
T Consensus 270 A~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~e~v-~~GvafHhAGL~~~~R~~vE~~Fr~g~ikVlv~Tp 348 (766)
T COG1204 270 AKKLRIKMSATLSDDEKIVLDEGASPILIPETPTSEDEELAELV-LRGVAFHHAGLPREDRQLVEDAFRKGKIKVLVSTP 348 (766)
T ss_pred HHHHHHHHhhcCChhhhhhccccccccccccccccchHHHHHHH-HhCccccccCCCHHHHHHHHHHHhcCCceEEEech
Confidence 99998421110 00 0 012333444 66899999999999999999999999999999999
Q ss_pred ccccCCCCCCCcEEE----EeC-----CCCChhHHHHhhhhcccCCC--CccEEEec-CccchhHHHHHHHcCC
Q 010357 395 VAARGLDFPKVKCII----QYD-----SAGEATEYVHRVGRTARLGE--RGDSLLFL-QPVEMDYLQDLEKHGV 456 (512)
Q Consensus 395 ~~~~Gldip~~~~VI----~~~-----~p~s~~~~~Q~~GRagR~g~--~g~~~~~~-~~~~~~~~~~l~~~~~ 456 (512)
++++|+|+|.-.+|| .|+ .+.++.+++|++|||||-|- .|.++++. +.++..++........
T Consensus 349 TLA~GVNLPA~~VIIk~~~~y~~~~g~~~i~~~dv~QM~GRAGRPg~d~~G~~~i~~~~~~~~~~~~~~~~~~~ 422 (766)
T COG1204 349 TLAAGVNLPARTVIIKDTRRYDPKGGIVDIPVLDVLQMAGRAGRPGYDDYGEAIILATSHDELEYLAELYIQSE 422 (766)
T ss_pred HHhhhcCCcceEEEEeeeEEEcCCCCeEECchhhHhhccCcCCCCCcCCCCcEEEEecCccchhHHHHHhhccC
Confidence 999999999766666 455 45688899999999999874 36677776 4455555555444433
No 55
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=100.00 E-value=4.4e-40 Score=323.84 Aligned_cols=371 Identities=19% Similarity=0.226 Sum_probs=251.4
Q ss_pred CCcHHHHHHHHHhhcCCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHHhhc
Q 010357 41 APTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRF 120 (512)
Q Consensus 41 ~~~~~Q~~~~~~~~~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~ 120 (512)
.+|+||.+.+..++ |+|+||++|||+|||++++..|.+++.+ .+..+++|++|++.|+.|+...+...+..
T Consensus 62 ~lR~YQ~eivq~AL-gkNtii~lPTG~GKTfIAa~Vm~nh~rw-------~p~~KiVF~aP~~pLv~QQ~a~~~~~~~~- 132 (746)
T KOG0354|consen 62 ELRNYQEELVQPAL-GKNTIIALPTGSGKTFIAAVIMKNHFEW-------RPKGKVVFLAPTRPLVNQQIACFSIYLIP- 132 (746)
T ss_pred cccHHHHHHhHHhh-cCCeEEEeecCCCccchHHHHHHHHHhc-------CCcceEEEeeCCchHHHHHHHHHhhccCc-
Confidence 59999999998888 9999999999999999999999999987 34588999999999999999666666543
Q ss_pred CCcceEEEeCCCchHHHHHHHcCCCCEEEeCChHHHHHHhhcCCCcCCceeEEEEcchhHHHhcCchHHHHHHHHHhccC
Q 010357 121 HWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILGSR 200 (512)
Q Consensus 121 ~~~~~~~~~~g~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lV~DEah~l~~~~~~~~~~~i~~~~~~~ 200 (512)
-.+....+|.....-...+....+|+|+||+.+.+.+.......++.+.++||||||+.....-+..+..-+..++..
T Consensus 133 --~~~T~~l~~~~~~~~r~~i~~s~~vff~TpQil~ndL~~~~~~~ls~fs~iv~DE~Hra~kn~~Y~~Vmr~~l~~k~~ 210 (746)
T KOG0354|consen 133 --YSVTGQLGDTVPRSNRGEIVASKRVFFRTPQILENDLKSGLHDELSDFSLIVFDECHRTSKNHPYNNIMREYLDLKNQ 210 (746)
T ss_pred --ccceeeccCccCCCchhhhhcccceEEeChHhhhhhcccccccccceEEEEEEcccccccccccHHHHHHHHHHhhhc
Confidence 334445556455455556777889999999999999887544456889999999999987776666665444333331
Q ss_pred CCCCCCCCCcccccceeEEEEEEecchhhHHHHHhhcCCCeEEccCCCcCCCC---------cccccc------------
Q 010357 201 NIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLPED---------KSHVRF------------ 259 (512)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~------------ 259 (512)
..|++++|||+......+.....+-..-+.+........ ...+.+
T Consensus 211 --------------~~qILgLTASpG~~~~~v~~~I~~L~asldvr~~ssi~~~y~~lr~~~~i~v~~~~~~~~~~~~f~ 276 (746)
T KOG0354|consen 211 --------------GNQILGLTASPGSKLEQVQNVIDNLCASLDVRTESSIKSNYEELREHVQIPVDLSLCERDIEDPFG 276 (746)
T ss_pred --------------cccEEEEecCCCccHHHHHHHHHhhheecccchhhhhhhhHHHHhccCcccCcHHHhhhhhhhhHH
Confidence 449999999998765554443222111111111000000 000000
Q ss_pred ------------CCcccchhhh---------------ccCCCccc-----c-------------------------cccc
Q 010357 260 ------------GSLESDVKEE---------------VEHPSTTM-----R-------------------------STTE 282 (512)
Q Consensus 260 ------------~~~~~~~~~~---------------~~~~~~~~-----~-------------------------~~~~ 282 (512)
..+....... ...+.... . +...
T Consensus 277 ~~i~p~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~f~~~~~~~~~~~ll~~~gir~~~~l~~~~~f~~ 356 (746)
T KOG0354|consen 277 MIIEPLLQQLQEEGLIEISDKSTSYEQWVVQAEKAAAPNGPENQRNCFYALHLRKYNLALLISDGIRFVDALDYLEDFYE 356 (746)
T ss_pred HHHHHHHHHHHhcCccccccccccccchhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHhhcchhhHHHHhhhhhhcc
Confidence 0000000000 00000000 0 0000
Q ss_pred cccccc------------c----ee--eeEEEec--CCchHHHHHHHHHhhhccccCceEEEEeecchhhhhHHHhhhhh
Q 010357 283 DFKLPA------------Q----LV--QRYVKVP--CGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEF 342 (512)
Q Consensus 283 ~~~~~~------------~----~~--~~~~~~~--~~~k~~~l~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~ 342 (512)
...... . .. ......+ ..+|+..+.+.+.+.+...+..++|||+.++..+..+..+|...
T Consensus 357 e~~~~k~~~~~~e~~~~~~~~~~m~~~~~l~~~~~~~npkle~l~~~l~e~f~~~~dsR~IIFve~R~sa~~l~~~l~~~ 436 (746)
T KOG0354|consen 357 EVALKKYLKLELEARLIRNFTENMNELEHLSLDPPKENPKLEKLVEILVEQFEQNPDSRTIIFVETRESALALKKWLLQL 436 (746)
T ss_pred ccchhHHHHHHhcchhhHHHHHHHHhhhhhhcCCCccChhHHHHHHHHHHHhhcCCCccEEEEEehHHHHHHHHHHHHhh
Confidence 000000 0 00 0000111 26788999999999888888899999999999999999999852
Q ss_pred cCCCCCCChhHHHhhhhccceeeecCCCCHHHHHHHHHhhhcCCCcEEEeecccccCCCCCCCcEEEEeCCCCChhHHHH
Q 010357 343 QWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVH 422 (512)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~v~~l~g~~~~~~r~~~~~~f~~~~~~vLvaT~~~~~Gldip~~~~VI~~~~p~s~~~~~Q 422 (512)
... ..-+.++.|.+-..-..+|++.++.++++.|++|+++|||||+++++|+|++.|++||-||...|+...+|
T Consensus 437 ~~~------~ir~~~fiGq~~s~~~~gmtqk~Q~evl~~Fr~G~~NvLVATSV~EEGLDI~ec~lVIcYd~~snpIrmIQ 510 (746)
T KOG0354|consen 437 HEL------GIKAEIFIGQGKSTQSTGMTQKEQKEVLDKFRDGEINVLVATSVAEEGLDIGECNLVICYDYSSNPIRMVQ 510 (746)
T ss_pred hhc------ccccceeeeccccccccccCHHHHHHHHHHHhCCCccEEEEecchhccCCcccccEEEEecCCccHHHHHH
Confidence 100 00011122222222335899999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcccCCCCccEEEecCccc
Q 010357 423 RVGRTARLGERGDSLLFLQPVE 444 (512)
Q Consensus 423 ~~GRagR~g~~g~~~~~~~~~~ 444 (512)
|.|| ||. +.|.|+++++..+
T Consensus 511 rrGR-gRa-~ns~~vll~t~~~ 530 (746)
T KOG0354|consen 511 RRGR-GRA-RNSKCVLLTTGSE 530 (746)
T ss_pred Hhcc-ccc-cCCeEEEEEcchh
Confidence 9999 998 6799999988544
No 56
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=6.7e-41 Score=282.84 Aligned_cols=333 Identities=27% Similarity=0.481 Sum_probs=279.6
Q ss_pred cCCcccCCCCHHHHHHHHHhcCCCCCcHHHHHHHHHhhcCCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceE
Q 010357 17 SCSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFA 96 (512)
Q Consensus 17 ~~~~~~~~l~~~~~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (512)
.+-|..+-|.+++++++.+ .||++|+..|++|+|...-|.+++++|..|.|||.+|.+.-++++.-.. ....+
T Consensus 41 ssgfrdfllkpellraivd-cgfehpsevqhecipqailgmdvlcqaksgmgktavfvl~tlqqiepv~------g~vsv 113 (387)
T KOG0329|consen 41 SSGFRDFLLKPELLRAIVD-CGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPVD------GQVSV 113 (387)
T ss_pred ccchhhhhcCHHHHHHHHh-ccCCCchHhhhhhhhHHhhcchhheecccCCCceeeeehhhhhhcCCCC------CeEEE
Confidence 4567888899999999987 5999999999999999999999999999999999999888877765422 24569
Q ss_pred EEEcCcHHHHHHHHHHHHHHHhhcCCcceEEEeCCCchHHHHHHHcCCCCEEEeCChHHHHHHhhcCCCcCCceeEEEEc
Q 010357 97 LVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFD 176 (512)
Q Consensus 97 lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lV~D 176 (512)
+++|.||+||-|+.++...++.+.+...+.+++||...+...+.+...++|+|+||++++.+..+ +.+.+++++..|+|
T Consensus 114 lvmchtrelafqi~~ey~rfskymP~vkvaVFfGG~~Ikkdee~lk~~PhivVgTPGrilALvr~-k~l~lk~vkhFvlD 192 (387)
T KOG0329|consen 114 LVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLFIKKDEELLKNCPHIVVGTPGRILALVRN-RSLNLKNVKHFVLD 192 (387)
T ss_pred EEEeccHHHHHHHHHHHHHHHhhCCCceEEEEEcceeccccHHHHhCCCeEEEcCcHHHHHHHHh-ccCchhhcceeehh
Confidence 99999999999999999999999999999999999999998888988999999999999988766 78888999999999
Q ss_pred chhHHHhc-CchHHHHHHHHHhccCCCCCCCCCCcccccceeEEEEEEecchhhHHHHHhhcCCCeEEccCCCcCCCCcc
Q 010357 177 EADRILEL-GFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLPEDKS 255 (512)
Q Consensus 177 Eah~l~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (512)
||+.+++. ...+.+..+++..|. ..|++.+|||+++.++.++..++.+|..+.++.+..
T Consensus 193 Ecdkmle~lDMrRDvQEifr~tp~---------------~KQvmmfsatlskeiRpvC~kFmQdPmEi~vDdE~K----- 252 (387)
T KOG0329|consen 193 ECDKMLEQLDMRRDVQEIFRMTPH---------------EKQVMMFSATLSKEIRPVCHKFMQDPMEIFVDDEAK----- 252 (387)
T ss_pred hHHHHHHHHHHHHHHHHHhhcCcc---------------cceeeeeeeecchhhHHHHHhhhcCchhhhccchhh-----
Confidence 99988764 577888888887776 889999999999999999999999998877776531
Q ss_pred ccccCCcccchhhhccCCCccccccccccccccceeeeEEEecCCchHHHHHHHHHhhhccccCceEEEEeecchhhhhH
Q 010357 256 HVRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFH 335 (512)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~lvf~~~~~~~~~l 335 (512)
-..-.+.++|+.....+|...+.+++..+ .-..++||+.+.....
T Consensus 253 -----------------------------LtLHGLqQ~YvkLke~eKNrkl~dLLd~L----eFNQVvIFvKsv~Rl~-- 297 (387)
T KOG0329|consen 253 -----------------------------LTLHGLQQYYVKLKENEKNRKLNDLLDVL----EFNQVVIFVKSVQRLS-- 297 (387)
T ss_pred -----------------------------hhhhhHHHHHHhhhhhhhhhhhhhhhhhh----hhcceeEeeehhhhhh--
Confidence 12345667777777777777777777654 3468999988776410
Q ss_pred HHhhhhhcCCCCCCChhHHHhhhhccceeeecCCCCHHHHHHHHHhhhcCCCcEEEeecccccCCCCCCCcEEEEeCCCC
Q 010357 336 YSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAG 415 (512)
Q Consensus 336 ~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~l~g~~~~~~r~~~~~~f~~~~~~vLvaT~~~~~Gldip~~~~VI~~~~p~ 415 (512)
| +.+ +|||+.+++|+|+..++.|++||+|.
T Consensus 298 ----------------------------------------------f---~kr-~vat~lfgrgmdiervNi~~NYdmp~ 327 (387)
T KOG0329|consen 298 ----------------------------------------------F---QKR-LVATDLFGRGMDIERVNIVFNYDMPE 327 (387)
T ss_pred ----------------------------------------------h---hhh-hHHhhhhccccCcccceeeeccCCCC
Confidence 2 124 89999999999999999999999999
Q ss_pred ChhHHHHhhhhcccCCCCccEEEecCc-cchhHHHHHHHc-CCCCCccC
Q 010357 416 EATEYVHRVGRTARLGERGDSLLFLQP-VEMDYLQDLEKH-GVSLTEYP 462 (512)
Q Consensus 416 s~~~~~Q~~GRagR~g~~g~~~~~~~~-~~~~~~~~l~~~-~~~~~~~~ 462 (512)
+..+|+||.|||||.|..|.++.|++. .+...+...+.. .+++.++|
T Consensus 328 ~~DtYlHrv~rAgrfGtkglaitfvs~e~da~iLn~vqdRf~v~i~eLp 376 (387)
T KOG0329|consen 328 DSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNPVQDRFEVNIKELP 376 (387)
T ss_pred CchHHHHHhhhhhccccccceeehhcchhhHHHhchhhHhhhccHhhcC
Confidence 999999999999999999999999986 455666666552 44444443
No 57
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=1.2e-38 Score=330.09 Aligned_cols=371 Identities=19% Similarity=0.223 Sum_probs=256.3
Q ss_pred HHHHHHHHhhcCCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHHh-hcCCc
Q 010357 45 VQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLH-RFHWI 123 (512)
Q Consensus 45 ~Q~~~~~~~~~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~-~~~~~ 123 (512)
+-.+.+..+.++++++++|+||||||.++.+++++... .+.+++++.|+|++|.|+++.+..... ..+ .
T Consensus 6 ~~~~i~~~l~~~~~vIi~a~TGSGKTT~vpl~lL~~~~---------~~~~ilvlqPrR~aA~qiA~rva~~~~~~~g-~ 75 (819)
T TIGR01970 6 VLPALRDALAAHPQVVLEAPPGAGKSTAVPLALLDAPG---------IGGKIIMLEPRRLAARSAAQRLASQLGEAVG-Q 75 (819)
T ss_pred HHHHHHHHHHcCCcEEEECCCCCCHHHHHHHHHHHhhc---------cCCeEEEEeCcHHHHHHHHHHHHHHhCCCcC-c
Confidence 34456667778889999999999999999999988652 245799999999999999998865433 222 3
Q ss_pred ceEEEeCCCchHHHHHHHcCCCCEEEeCChHHHHHHhhcCCCcCCceeEEEEcchhH-HHhcCchHH-HHHHHHHhccCC
Q 010357 124 VPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADR-ILELGFGKE-IEEILDILGSRN 201 (512)
Q Consensus 124 ~~~~~~~g~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lV~DEah~-l~~~~~~~~-~~~i~~~~~~~~ 201 (512)
.+++...++. ......+|+|+||++|++.+... ..++++++|||||+|. .++..+... +..+...++.
T Consensus 76 ~VGy~vr~~~------~~s~~t~I~v~T~G~Llr~l~~d--~~L~~v~~VIiDEaHER~L~~Dl~L~ll~~i~~~lr~-- 145 (819)
T TIGR01970 76 TVGYRVRGEN------KVSRRTRLEVVTEGILTRMIQDD--PELDGVGALIFDEFHERSLDADLGLALALDVQSSLRE-- 145 (819)
T ss_pred EEEEEEcccc------ccCCCCcEEEECCcHHHHHHhhC--cccccCCEEEEeccchhhhccchHHHHHHHHHHhcCC--
Confidence 4555555433 12345789999999999988763 3567999999999994 555444432 2344444443
Q ss_pred CCCCCCCCcccccceeEEEEEEecchhhHHHHHhhcCCCeEEccCCCcCCCCccccccCCcccchhhhccCCCccccccc
Q 010357 202 IGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLPEDKSHVRFGSLESDVKEEVEHPSTTMRSTT 281 (512)
Q Consensus 202 ~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (512)
+.++++||||++... + ..++.++..+.......
T Consensus 146 -------------dlqlIlmSATl~~~~--l-~~~l~~~~vI~~~gr~~------------------------------- 178 (819)
T TIGR01970 146 -------------DLKILAMSATLDGER--L-SSLLPDAPVVESEGRSF------------------------------- 178 (819)
T ss_pred -------------CceEEEEeCCCCHHH--H-HHHcCCCcEEEecCcce-------------------------------
Confidence 789999999998643 3 33444333333322210
Q ss_pred cccccccceeeeEEEecCCchH-HHHHHHHHhhhccccCceEEEEeecchhhhhHHHhhhhhcCCCCCCChhHHHhhhhc
Q 010357 282 EDFKLPAQLVQRYVKVPCGSRL-AVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLR 360 (512)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~k~-~~l~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 360 (512)
.+.+.|......++. ..+...+...+. ...+.+|||++++.+++.+++.|.+... .+
T Consensus 179 -------pVe~~y~~~~~~~~~~~~v~~~l~~~l~-~~~g~iLVFlpg~~eI~~l~~~L~~~~~--------------~~ 236 (819)
T TIGR01970 179 -------PVEIRYLPLRGDQRLEDAVSRAVEHALA-SETGSILVFLPGQAEIRRVQEQLAERLD--------------SD 236 (819)
T ss_pred -------eeeeEEeecchhhhHHHHHHHHHHHHHH-hcCCcEEEEECCHHHHHHHHHHHHhhcC--------------CC
Confidence 122233333222332 122233333332 2357899999999999999999976321 16
Q ss_pred cceeeecCCCCHHHHHHHHHhhhcCCCcEEEeecccccCCCCCCCcEEEEeCCCC------------------ChhHHHH
Q 010357 361 CKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAG------------------EATEYVH 422 (512)
Q Consensus 361 ~~v~~l~g~~~~~~r~~~~~~f~~~~~~vLvaT~~~~~Gldip~~~~VI~~~~p~------------------s~~~~~Q 422 (512)
+.+..+||+|+.++|..+++.|++|..+|||||+++++|||+|++++||+++.|. |..++.|
T Consensus 237 ~~v~pLHg~L~~~eq~~~~~~~~~G~rkVlVATnIAErgItIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~Q 316 (819)
T TIGR01970 237 VLICPLYGELSLAAQDRAIKPDPQGRRKVVLATNIAETSLTIEGIRVVIDSGLARVARFDPKTGITRLETVRISQASATQ 316 (819)
T ss_pred cEEEEecCCCCHHHHHHHHhhcccCCeEEEEecchHhhcccccCceEEEEcCcccccccccccCCceeeEEEECHHHHHh
Confidence 7899999999999999999999999999999999999999999999999999875 3446899
Q ss_pred hhhhcccCCCCccEEEecCccchhHHHHHHHcCCCCCccChhhHhhhccccCCCCccccccCccchhhHHHHHHHHHHHH
Q 010357 423 RVGRTARLGERGDSLLFLQPVEMDYLQDLEKHGVSLTEYPLLKVLDSFPLYGQKPRVKKFLTTESHPWILSLQNALESFI 502 (512)
Q Consensus 423 ~~GRagR~g~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 502 (512)
|+|||||. ++|.||.++++.+...+.... .-++...++..++-.+......+. ..+.+-..|....+..+++.+.
T Consensus 317 R~GRAGR~-~~G~cyrL~t~~~~~~l~~~~--~PEI~r~~L~~~~L~l~~~g~~~~--~~~~~l~~P~~~~i~~a~~~L~ 391 (819)
T TIGR01970 317 RAGRAGRL-EPGVCYRLWSEEQHQRLPAQD--EPEILQADLSGLALELAQWGAKDP--SDLRWLDAPPSVALAAARQLLQ 391 (819)
T ss_pred hhhhcCCC-CCCEEEEeCCHHHHHhhhcCC--CcceeccCcHHHHHHHHHcCCCCh--hhCCCCCCcCHHHHHHHHHHHH
Confidence 99999999 799999999987654433221 223344455444333332222111 2234444566788888888887
Q ss_pred Hhccccc
Q 010357 503 IHEILSC 509 (512)
Q Consensus 503 ~~~~~~~ 509 (512)
.-+.++.
T Consensus 392 ~lgald~ 398 (819)
T TIGR01970 392 RLGALDA 398 (819)
T ss_pred HCCCCCC
Confidence 7766653
No 58
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=100.00 E-value=7.9e-40 Score=306.35 Aligned_cols=347 Identities=22% Similarity=0.260 Sum_probs=271.7
Q ss_pred CccCCcccCCCCHHHHHHHHHhcCCCCCcHHHHHHHHH-hhcCCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCC
Q 010357 15 FASCSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPV-ILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSG 93 (512)
Q Consensus 15 ~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~Q~~~~~~-~~~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~ 93 (512)
-...+..++++++++...++ ..|++++.|.|.-|+.. +++|+|.+|+.+|+||||++.-++=+..+.. .+
T Consensus 191 ~~r~~vdeLdipe~fk~~lk-~~G~~eLlPVQ~laVe~GLLeG~nllVVSaTasGKTLIgElAGi~~~l~--------~g 261 (830)
T COG1202 191 VERVPVDELDIPEKFKRMLK-REGIEELLPVQVLAVEAGLLEGENLLVVSATASGKTLIGELAGIPRLLS--------GG 261 (830)
T ss_pred cccccccccCCcHHHHHHHH-hcCcceecchhhhhhhhccccCCceEEEeccCCCcchHHHhhCcHHHHh--------CC
Confidence 34467889999999999995 56999999999999976 7799999999999999999987776665554 47
Q ss_pred ceEEEEcCcHHHHHHHHHHHHHHHhhcCCcceEEEeCCCchHHHH----HHHcCCCCEEEeCChHHHHHHhhcCCCcCCc
Q 010357 94 TFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEK----ARLRKGISILVATPGRLLDHLKHTSSFLHTN 169 (512)
Q Consensus 94 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~----~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~ 169 (512)
.+.||++|..+||+|-++.|+.-...++. .+..-.|.......- ......+||||+|++-+-.++... -.+.+
T Consensus 262 ~KmlfLvPLVALANQKy~dF~~rYs~Lgl-kvairVG~srIk~~~~pv~~~t~~dADIIVGTYEGiD~lLRtg--~~lgd 338 (830)
T COG1202 262 KKMLFLVPLVALANQKYEDFKERYSKLGL-KVAIRVGMSRIKTREEPVVVDTSPDADIIVGTYEGIDYLLRTG--KDLGD 338 (830)
T ss_pred CeEEEEehhHHhhcchHHHHHHHhhcccc-eEEEEechhhhcccCCccccCCCCCCcEEEeechhHHHHHHcC--Ccccc
Confidence 88999999999999999999888776663 333333332222111 112234799999999998888764 45679
Q ss_pred eeEEEEcchhHHHhcCchHHHHHHHHHhccCCCCCCCCCCcccccceeEEEEEEecchhhHHHHHhhcCCCeEEccCCCc
Q 010357 170 LRWIIFDEADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKK 249 (512)
Q Consensus 170 ~~~lV~DEah~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (512)
++.||+||+|.+.+..++..+..++.+++.... ..|+|++|||+.++......+... . +.++..
T Consensus 339 iGtVVIDEiHtL~deERG~RLdGLI~RLr~l~~------------~AQ~i~LSATVgNp~elA~~l~a~-l--V~y~~R- 402 (830)
T COG1202 339 IGTVVIDEIHTLEDEERGPRLDGLIGRLRYLFP------------GAQFIYLSATVGNPEELAKKLGAK-L--VLYDER- 402 (830)
T ss_pred cceEEeeeeeeccchhcccchhhHHHHHHHhCC------------CCeEEEEEeecCChHHHHHHhCCe-e--EeecCC-
Confidence 999999999999888899999999988876432 689999999999876655554322 2 222222
Q ss_pred CCCCccccccCCcccchhhhccCCCccccccccccccccceeee-EEEecCCchHHHHHHHHHhhhcc----ccCceEEE
Q 010357 250 LPEDKSHVRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQR-YVKVPCGSRLAVLLSILKHLFDT----EVSQKLVV 324 (512)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~k~~~l~~~l~~~~~~----~~~~~~lv 324 (512)
|..+... ...-+..+|+..+..+++.-+.. .-.+.+||
T Consensus 403 -------------------------------------PVplErHlvf~~~e~eK~~ii~~L~k~E~~~~sskg~rGQtIV 445 (830)
T COG1202 403 -------------------------------------PVPLERHLVFARNESEKWDIIARLVKREFSTESSKGYRGQTIV 445 (830)
T ss_pred -------------------------------------CCChhHeeeeecCchHHHHHHHHHHHHHHhhhhccCcCCceEE
Confidence 2223333 33345778999888888876643 23469999
Q ss_pred EeecchhhhhHHHhhhhhcCCCCCCChhHHHhhhhccceeeecCCCCHHHHHHHHHhhhcCCCcEEEeecccccCCCCCC
Q 010357 325 FFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPK 404 (512)
Q Consensus 325 f~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~l~g~~~~~~r~~~~~~f~~~~~~vLvaT~~~~~Gldip~ 404 (512)
|++|+..|+.+++.|... |+++..||++|+..+|..++..|.++++.++|+|.+++.|+|+|.
T Consensus 446 FT~SRrr~h~lA~~L~~k-----------------G~~a~pYHaGL~y~eRk~vE~~F~~q~l~~VVTTAAL~AGVDFPA 508 (830)
T COG1202 446 FTYSRRRCHELADALTGK-----------------GLKAAPYHAGLPYKERKSVERAFAAQELAAVVTTAALAAGVDFPA 508 (830)
T ss_pred EecchhhHHHHHHHhhcC-----------------CcccccccCCCcHHHHHHHHHHHhcCCcceEeehhhhhcCCCCch
Confidence 999999999999999987 888999999999999999999999999999999999999999996
Q ss_pred CcEEE---EeCCCC-ChhHHHHhhhhcccCCC--CccEEEecCcc
Q 010357 405 VKCII---QYDSAG-EATEYVHRVGRTARLGE--RGDSLLFLQPV 443 (512)
Q Consensus 405 ~~~VI---~~~~p~-s~~~~~Q~~GRagR~g~--~g~~~~~~~~~ 443 (512)
-.+++ -++.-| |+.+|.||.|||||-+- .|.+++++.++
T Consensus 509 SQVIFEsLaMG~~WLs~~EF~QM~GRAGRp~yHdrGkVyllvepg 553 (830)
T COG1202 509 SQVIFESLAMGIEWLSVREFQQMLGRAGRPDYHDRGKVYLLVEPG 553 (830)
T ss_pred HHHHHHHHHcccccCCHHHHHHHhcccCCCCcccCceEEEEecCC
Confidence 55433 233333 89999999999999764 58999998764
No 59
>PHA02653 RNA helicase NPH-II; Provisional
Probab=100.00 E-value=3.5e-39 Score=326.06 Aligned_cols=370 Identities=15% Similarity=0.130 Sum_probs=242.9
Q ss_pred cHHHHHHHHHhhcCCCEEEEccCCChHhHHHHH---------HHHHHHhhcCCCCCCCCCceEEEEcCcHHHHHHHHHHH
Q 010357 43 TKVQAQAIPVILSGRHVLVNAATGTGKTVAYLA---------PIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEIL 113 (512)
Q Consensus 43 ~~~Q~~~~~~~~~~~~~lv~~pTGsGKT~~~~~---------~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~ 113 (512)
-.+|+++++.++++++++++|+||||||.+... +.+..+....+ .....++++++|+++|+.|+...+
T Consensus 166 ~~iQ~qil~~i~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~~---~~~~~~ilvt~PrreLa~qi~~~i 242 (675)
T PHA02653 166 PDVQLKIFEAWISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKIDP---NFIERPIVLSLPRVALVRLHSITL 242 (675)
T ss_pred HHHHHHHHHHHHhCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhccc---ccCCcEEEEECcHHHHHHHHHHHH
Confidence 356889999999999999999999999987432 23333221111 123568999999999999999988
Q ss_pred HHHHhh--cCCcceEEEeCCCchHHHHHHHcCCCCEEEeCChHHHHHHhhcCCCcCCceeEEEEcchhHHHhcCchHHHH
Q 010357 114 HKLLHR--FHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIE 191 (512)
Q Consensus 114 ~~~~~~--~~~~~~~~~~~g~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lV~DEah~l~~~~~~~~~~ 191 (512)
...... +....+...+||... .......++.+|+++|++... ..++++++||+||||+....+ ..+.
T Consensus 243 ~~~vg~~~~~g~~v~v~~Gg~~~-~~~~t~~k~~~Ilv~T~~L~l--------~~L~~v~~VVIDEaHEr~~~~--DllL 311 (675)
T PHA02653 243 LKSLGFDEIDGSPISLKYGSIPD-ELINTNPKPYGLVFSTHKLTL--------NKLFDYGTVIIDEVHEHDQIG--DIII 311 (675)
T ss_pred HHHhCccccCCceEEEEECCcch-HHhhcccCCCCEEEEeCcccc--------cccccCCEEEccccccCccch--hHHH
Confidence 776543 122445667777652 222233346799999975311 134589999999999976643 4445
Q ss_pred HHHHHhccCCCCCCCCCCcccccceeEEEEEEecchhhHHHHHhhcCCCeEEccCCCcCCCCccccccCCcccchhhhcc
Q 010357 192 EILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLPEDKSHVRFGSLESDVKEEVE 271 (512)
Q Consensus 192 ~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (512)
.++...... .+|+++||||++...+.+. .+++++..+.+.....
T Consensus 312 ~llk~~~~~--------------~rq~ILmSATl~~dv~~l~-~~~~~p~~I~I~grt~--------------------- 355 (675)
T PHA02653 312 AVARKHIDK--------------IRSLFLMTATLEDDRDRIK-EFFPNPAFVHIPGGTL--------------------- 355 (675)
T ss_pred HHHHHhhhh--------------cCEEEEEccCCcHhHHHHH-HHhcCCcEEEeCCCcC---------------------
Confidence 555433221 3589999999998777764 5666676665543210
Q ss_pred CCCccccccccccccccceeeeEEEec----------CCchHHHHHHHHHhhhccccCceEEEEeecchhhhhHHHhhhh
Q 010357 272 HPSTTMRSTTEDFKLPAQLVQRYVKVP----------CGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSE 341 (512)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~k~~~l~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~ 341 (512)
..+.+.+.... ...+ ..+...+.... ...++.+|||++++.+++.+++.|.+
T Consensus 356 ----------------~pV~~~yi~~~~~~~~~~~y~~~~k-~~~l~~L~~~~-~~~~g~iLVFlpg~~ei~~l~~~L~~ 417 (675)
T PHA02653 356 ----------------FPISEVYVKNKYNPKNKRAYIEEEK-KNIVTALKKYT-PPKGSSGIVFVASVSQCEEYKKYLEK 417 (675)
T ss_pred ----------------CCeEEEEeecCcccccchhhhHHHH-HHHHHHHHHhh-cccCCcEEEEECcHHHHHHHHHHHHh
Confidence 01111111100 0111 12233332221 12356899999999999999999976
Q ss_pred hcCCCCCCChhHHHhhhhccceeeecCCCCHHHHHHHHHhh-hcCCCcEEEeecccccCCCCCCCcEEEEeC---CCC--
Q 010357 342 FQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAF-KTEKKALLLSTDVAARGLDFPKVKCIIQYD---SAG-- 415 (512)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~v~~l~g~~~~~~r~~~~~~f-~~~~~~vLvaT~~~~~Gldip~~~~VI~~~---~p~-- 415 (512)
.. +++.+..+||+|++. ++.+++| ++|+.+|||||+++++|+|+|++++||++| .|.
T Consensus 418 ~~---------------~~~~v~~LHG~Lsq~--eq~l~~ff~~gk~kILVATdIAERGIDIp~V~~VID~G~~k~p~~~ 480 (675)
T PHA02653 418 RL---------------PIYDFYIIHGKVPNI--DEILEKVYSSKNPSIIISTPYLESSVTIRNATHVYDTGRVYVPEPF 480 (675)
T ss_pred hc---------------CCceEEeccCCcCHH--HHHHHHHhccCceeEEeccChhhccccccCeeEEEECCCccCCCcc
Confidence 52 157899999999974 5666777 689999999999999999999999999998 554
Q ss_pred -------ChhHHHHhhhhcccCCCCccEEEecCccchhHHHHHHHcCCCCCccChhhHhhhccccCCCCccccccCccch
Q 010357 416 -------EATEYVHRVGRTARLGERGDSLLFLQPVEMDYLQDLEKHGVSLTEYPLLKVLDSFPLYGQKPRVKKFLTTESH 488 (512)
Q Consensus 416 -------s~~~~~Q~~GRagR~g~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 488 (512)
|.++|.||+|||||. ++|.|+.++++.+...+.++.. + ++..++-.+..... +.. .. .+-..
T Consensus 481 ~g~~~~iSkasa~QRaGRAGR~-~~G~c~rLyt~~~~~pI~ri~~-----~--~L~~~vL~lk~~g~-~~~-~~-~~ldp 549 (675)
T PHA02653 481 GGKEMFISKSMRTQRKGRVGRV-SPGTYVYFYDLDLLKPIKRIDS-----E--FLHNYILYAKYFNL-TLP-ED-LFVIP 549 (675)
T ss_pred cCcccccCHHHHHHhccCcCCC-CCCeEEEEECHHHhHHHHHHhH-----H--HHHHHHHHHHHcCC-CCc-cc-ccCCC
Confidence 888999999999999 7899999999877432222110 0 12222211111111 111 11 14445
Q ss_pred hhHHHHHHHHHHHHHhcccc
Q 010357 489 PWILSLQNALESFIIHEILS 508 (512)
Q Consensus 489 ~~~~~~~~~~e~~~~~~~~~ 508 (512)
|....+..+++.+..-+.++
T Consensus 550 P~~~~l~~A~~~L~~lga~~ 569 (675)
T PHA02653 550 SNLDRLRKTEEYIDSFNISI 569 (675)
T ss_pred CCHHHHHHHHHHHHHcCCCc
Confidence 66788888888887766543
No 60
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=100.00 E-value=3.2e-38 Score=327.78 Aligned_cols=370 Identities=18% Similarity=0.218 Sum_probs=253.1
Q ss_pred HHHHHHHhhcCCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHHhhcCCcce
Q 010357 46 QAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVP 125 (512)
Q Consensus 46 Q~~~~~~~~~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~ 125 (512)
-.+.+..+.++++++++||||||||.++.+++++.... ..+++++.|+|++|.|+++.+.......-...+
T Consensus 10 ~~~i~~~l~~~~~vvv~A~TGSGKTt~~pl~lL~~~~~---------~~~ilvlqPrR~aA~qia~rva~~l~~~~g~~V 80 (812)
T PRK11664 10 LPELLTALKTAPQVLLKAPTGAGKSTWLPLQLLQHGGI---------NGKIIMLEPRRLAARNVAQRLAEQLGEKPGETV 80 (812)
T ss_pred HHHHHHHHHhCCCEEEEcCCCCCHHHHHHHHHHHcCCc---------CCeEEEECChHHHHHHHHHHHHHHhCcccCceE
Confidence 34556667788899999999999999999998875321 347999999999999999988654432222455
Q ss_pred EEEeCCCchHHHHHHHcCCCCEEEeCChHHHHHHhhcCCCcCCceeEEEEcchhH-HHhcCc-hHHHHHHHHHhccCCCC
Q 010357 126 GYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADR-ILELGF-GKEIEEILDILGSRNIG 203 (512)
Q Consensus 126 ~~~~~g~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lV~DEah~-l~~~~~-~~~~~~i~~~~~~~~~~ 203 (512)
++..++++.. ....+|+|+||++|++.+... ..++++++|||||+|. ..+..+ ...+..++..++.
T Consensus 81 Gy~vr~~~~~------~~~t~I~v~T~G~Llr~l~~d--~~L~~v~~IIlDEaHER~l~~Dl~L~ll~~i~~~lr~---- 148 (812)
T PRK11664 81 GYRMRAESKV------GPNTRLEVVTEGILTRMIQRD--PELSGVGLVILDEFHERSLQADLALALLLDVQQGLRD---- 148 (812)
T ss_pred EEEecCcccc------CCCCcEEEEChhHHHHHHhhC--CCcCcCcEEEEcCCCccccccchHHHHHHHHHHhCCc----
Confidence 6666665422 234579999999999988753 3567999999999996 222211 1222334444433
Q ss_pred CCCCCCcccccceeEEEEEEecchhhHHHHHhhcCCCeEEccCCCcCCCCccccccCCcccchhhhccCCCccccccccc
Q 010357 204 SIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLPEDKSHVRFGSLESDVKEEVEHPSTTMRSTTED 283 (512)
Q Consensus 204 ~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (512)
+.++++||||++.. .+ ..++.++..+.......
T Consensus 149 -----------~lqlilmSATl~~~--~l-~~~~~~~~~I~~~gr~~--------------------------------- 181 (812)
T PRK11664 149 -----------DLKLLIMSATLDND--RL-QQLLPDAPVIVSEGRSF--------------------------------- 181 (812)
T ss_pred -----------cceEEEEecCCCHH--HH-HHhcCCCCEEEecCccc---------------------------------
Confidence 78999999999864 23 33444333333222210
Q ss_pred cccccceeeeEEEecCCchHH-HHHHHHHhhhccccCceEEEEeecchhhhhHHHhhhhhcCCCCCCChhHHHhhhhccc
Q 010357 284 FKLPAQLVQRYVKVPCGSRLA-VLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCK 362 (512)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~k~~-~l~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 362 (512)
.+.+.|...+...+.. .+...+...+. ...+.+|||++++.+++.+++.|.+.... ++.
T Consensus 182 -----pV~~~y~~~~~~~~~~~~v~~~l~~~l~-~~~g~iLVFlpg~~ei~~l~~~L~~~~~~--------------~~~ 241 (812)
T PRK11664 182 -----PVERRYQPLPAHQRFDEAVARATAELLR-QESGSLLLFLPGVGEIQRVQEQLASRVAS--------------DVL 241 (812)
T ss_pred -----cceEEeccCchhhhHHHHHHHHHHHHHH-hCCCCEEEEcCCHHHHHHHHHHHHHhccC--------------Cce
Confidence 1222232222233332 22233333332 23589999999999999999999863211 677
Q ss_pred eeeecCCCCHHHHHHHHHhhhcCCCcEEEeecccccCCCCCCCcEEEEeCCCC------------------ChhHHHHhh
Q 010357 363 TFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAG------------------EATEYVHRV 424 (512)
Q Consensus 363 v~~l~g~~~~~~r~~~~~~f~~~~~~vLvaT~~~~~Gldip~~~~VI~~~~p~------------------s~~~~~Q~~ 424 (512)
+..+||+|+..+|..+++.|++|+.+|||||+++++|||+|++++||+++.+. |..+|.||+
T Consensus 242 v~~Lhg~l~~~eq~~~~~~~~~G~rkVlvATnIAErsLtIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~ 321 (812)
T PRK11664 242 LCPLYGALSLAEQQKAILPAPAGRRKVVLATNIAETSLTIEGIRLVVDSGLERVARFDPKTGLTRLVTQRISQASMTQRA 321 (812)
T ss_pred EEEeeCCCCHHHHHHHhccccCCCeEEEEecchHHhcccccCceEEEECCCcccccccccCCcceeEEEeechhhhhhhc
Confidence 99999999999999999999999999999999999999999999999988764 345899999
Q ss_pred hhcccCCCCccEEEecCccchhHHHHHHHc-CCCCCccChhhHhhhccccCCCCccccccCccchhhHHHHHHHHHHHHH
Q 010357 425 GRTARLGERGDSLLFLQPVEMDYLQDLEKH-GVSLTEYPLLKVLDSFPLYGQKPRVKKFLTTESHPWILSLQNALESFII 503 (512)
Q Consensus 425 GRagR~g~~g~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~ 503 (512)
|||||. ++|.||.++++.+...+ ... .-++...++..++-.+......+ ...+.+--.|....++.+++.+..
T Consensus 322 GRaGR~-~~G~cyrL~t~~~~~~l---~~~~~PEI~r~dL~~~~L~l~~~g~~~--~~~~~~ld~P~~~~~~~A~~~L~~ 395 (812)
T PRK11664 322 GRAGRL-EPGICLHLYSKEQAERA---AAQSEPEILHSDLSGLLLELLQWGCHD--PAQLSWLDQPPAAALAAAKRLLQQ 395 (812)
T ss_pred cccCCC-CCcEEEEecCHHHHhhC---ccCCCCceeccchHHHHHHHHHcCCCC--HHhCCCCCCCCHHHHHHHHHHHHH
Confidence 999999 69999999998765432 222 22333344544333322222111 123444455677889999999887
Q ss_pred hccccc
Q 010357 504 HEILSC 509 (512)
Q Consensus 504 ~~~~~~ 509 (512)
-+.++.
T Consensus 396 lgald~ 401 (812)
T PRK11664 396 LGALDG 401 (812)
T ss_pred CCCCCC
Confidence 776653
No 61
>PHA02558 uvsW UvsW helicase; Provisional
Probab=100.00 E-value=8.7e-39 Score=320.68 Aligned_cols=333 Identities=15% Similarity=0.153 Sum_probs=222.2
Q ss_pred CCcHHHHHHHHHhhcCCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHHhhc
Q 010357 41 APTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRF 120 (512)
Q Consensus 41 ~~~~~Q~~~~~~~~~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~ 120 (512)
.|+++|+++++.++.+++.++++|||+|||+++...+...+.. ...++||++||++|+.||.+.+..+....
T Consensus 114 ~~r~~Q~~av~~~l~~~~~il~apTGsGKT~i~~~l~~~~~~~--------~~~~vLilvpt~eL~~Q~~~~l~~~~~~~ 185 (501)
T PHA02558 114 EPHWYQYDAVYEGLKNNRRLLNLPTSAGKSLIQYLLSRYYLEN--------YEGKVLIIVPTTSLVTQMIDDFVDYRLFP 185 (501)
T ss_pred CCCHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHHHhc--------CCCeEEEEECcHHHHHHHHHHHHHhcccc
Confidence 6999999999999999999999999999999876544333322 13379999999999999999999876422
Q ss_pred CCcceEEEeCCCchHHHHHHHcCCCCEEEeCChHHHHHHhhcCCCcCCceeEEEEcchhHHHhcCchHHHHHHHHHhccC
Q 010357 121 HWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILGSR 200 (512)
Q Consensus 121 ~~~~~~~~~~g~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lV~DEah~l~~~~~~~~~~~i~~~~~~~ 200 (512)
. .....+.+|.... ...+|+|+||+++.+... ..+.++++||+||||++... .+..++..++.
T Consensus 186 ~-~~~~~i~~g~~~~-------~~~~I~VaT~qsl~~~~~----~~~~~~~~iIvDEaH~~~~~----~~~~il~~~~~- 248 (501)
T PHA02558 186 R-EAMHKIYSGTAKD-------TDAPIVVSTWQSAVKQPK----EWFDQFGMVIVDECHLFTGK----SLTSIITKLDN- 248 (501)
T ss_pred c-cceeEEecCcccC-------CCCCEEEeeHHHHhhchh----hhccccCEEEEEchhcccch----hHHHHHHhhhc-
Confidence 2 2233444554321 346899999999976432 13468999999999998653 45566666643
Q ss_pred CCCCCCCCCcccccceeEEEEEEecchhhHHHH--HhhcCCCeEEccCCCcCCCCccccccCCcccchhhhccCCCcccc
Q 010357 201 NIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLA--KISLETPVLIGLDEKKLPEDKSHVRFGSLESDVKEEVEHPSTTMR 278 (512)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (512)
..+++++|||+.+...... ...+++ ....+....+........+........ ..... .
T Consensus 249 --------------~~~~lGLTATp~~~~~~~~~~~~~fG~-i~~~v~~~~li~~g~l~~~~~~~v~~~----~~~~~-~ 308 (501)
T PHA02558 249 --------------CKFKFGLTGSLRDGKANILQYVGLFGD-IFKPVTTSQLMEEGQVTDLKINSIFLR----YPDED-R 308 (501)
T ss_pred --------------cceEEEEeccCCCccccHHHHHHhhCC-ceEEecHHHHHhCCCcCCceEEEEecc----CCHHH-h
Confidence 5689999999975322111 111222 211111111100000000000000000 00000 0
Q ss_pred ccccccccccceeeeE-EEecCCchHHHHHHHHHhhhccccCceEEEEeecchhhhhHHHhhhhhcCCCCCCChhHHHhh
Q 010357 279 STTEDFKLPAQLVQRY-VKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQL 357 (512)
Q Consensus 279 ~~~~~~~~~~~~~~~~-~~~~~~~k~~~l~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 357 (512)
... ........+ .......+...+...+..+. ..+.+++|||.++++++.+++.|...
T Consensus 309 ~~~----~~~~~~~~~~~l~~~~~Rn~~I~~~~~~~~--~~~~~~lV~~~~~~h~~~L~~~L~~~--------------- 367 (501)
T PHA02558 309 VKL----KGEDYQEEIKYITSHTKRNKWIANLALKLA--KKGENTFVMFKYVEHGKPLYEMLKKV--------------- 367 (501)
T ss_pred hhh----cccchHHHHHHHhccHHHHHHHHHHHHHHH--hcCCCEEEEEEEHHHHHHHHHHHHHc---------------
Confidence 000 000000000 01122334455555555543 34578999999999999999999987
Q ss_pred hhccceeeecCCCCHHHHHHHHHhhhcCCCcEEEee-cccccCCCCCCCcEEEEeCCCCChhHHHHhhhhcccCCCCccE
Q 010357 358 FLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLST-DVAARGLDFPKVKCIIQYDSAGEATEYVHRVGRTARLGERGDS 436 (512)
Q Consensus 358 ~~~~~v~~l~g~~~~~~r~~~~~~f~~~~~~vLvaT-~~~~~Gldip~~~~VI~~~~p~s~~~~~Q~~GRagR~g~~g~~ 436 (512)
+.++..+||+|+.++|..+++.|++|+..+|||| +++++|+|+|++++||+++++.|...|+||+||++|.+..+..
T Consensus 368 --g~~v~~i~G~~~~~eR~~i~~~~~~~~~~vLvaT~~~l~eG~Dip~ld~vIl~~p~~s~~~~~QriGR~~R~~~~K~~ 445 (501)
T PHA02558 368 --YDKVYYVSGEVDTEDRNEMKKIAEGGKGIIIVASYGVFSTGISIKNLHHVIFAHPSKSKIIVLQSIGRVLRKHGSKSI 445 (501)
T ss_pred --CCCEEEEeCCCCHHHHHHHHHHHhCCCCeEEEEEcceeccccccccccEEEEecCCcchhhhhhhhhccccCCCCCce
Confidence 7789999999999999999999999999999998 8999999999999999999999999999999999998776554
Q ss_pred EEecC
Q 010357 437 LLFLQ 441 (512)
Q Consensus 437 ~~~~~ 441 (512)
..+++
T Consensus 446 ~~i~D 450 (501)
T PHA02558 446 ATVWD 450 (501)
T ss_pred EEEEE
Confidence 44443
No 62
>PRK09401 reverse gyrase; Reviewed
Probab=100.00 E-value=2.3e-37 Score=331.38 Aligned_cols=323 Identities=19% Similarity=0.254 Sum_probs=232.7
Q ss_pred HHHHHHHHHhcCCCCCcHHHHHHHHHhhcCCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcHHHH
Q 010357 27 STLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELC 106 (512)
Q Consensus 27 ~~~~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~ 106 (512)
.++.+.+++.+|+ +|+++|+++++.++.|++++++||||+|||. +++++...+.. .+.+++|++||++|+
T Consensus 67 ~~~~~~f~~~~G~-~pt~iQ~~~i~~il~g~dv~i~ApTGsGKT~-f~l~~~~~l~~--------~g~~alIL~PTreLa 136 (1176)
T PRK09401 67 KEFEKFFKKKTGS-KPWSLQRTWAKRLLLGESFAIIAPTGVGKTT-FGLVMSLYLAK--------KGKKSYIIFPTRLLV 136 (1176)
T ss_pred HHHHHHHHHhcCC-CCcHHHHHHHHHHHCCCcEEEEcCCCCCHHH-HHHHHHHHHHh--------cCCeEEEEeccHHHH
Confidence 3555567677788 5999999999999999999999999999996 44455444432 367899999999999
Q ss_pred HHHHHHHHHHHhhcCCcceEEEeCCCc-----hHHHHHHHc-CCCCEEEeCChHHHHHHhhcCCCcCCceeEEEEcchhH
Q 010357 107 LQVYEILHKLLHRFHWIVPGYVMGGEN-----RSKEKARLR-KGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADR 180 (512)
Q Consensus 107 ~q~~~~~~~~~~~~~~~~~~~~~~g~~-----~~~~~~~~~-~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lV~DEah~ 180 (512)
.|+++.++.++...+.. +....++.. .......+. ..++|+|+||++|.+.+.. +....++++|+||||+
T Consensus 137 ~Qi~~~l~~l~~~~~~~-~~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~~---l~~~~~~~lVvDEaD~ 212 (1176)
T PRK09401 137 EQVVEKLEKFGEKVGCG-VKILYYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFDE---LPKKKFDFVFVDDVDA 212 (1176)
T ss_pred HHHHHHHHHHhhhcCce-EEEEEccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHHh---ccccccCEEEEEChHH
Confidence 99999999998766533 334444432 223333444 4589999999999987752 3344699999999999
Q ss_pred HHh-----------cCch-HHHHHHHHHhccCCCCCC---------CCCCcccccceeEEEEEEecchh-hHHHHHhhcC
Q 010357 181 ILE-----------LGFG-KEIEEILDILGSRNIGSI---------GEGNEVSNVKRQNLLLSATLNEK-VNHLAKISLE 238 (512)
Q Consensus 181 l~~-----------~~~~-~~~~~i~~~~~~~~~~~~---------~~~~~~~~~~~~~i~~SAT~~~~-~~~~~~~~~~ 238 (512)
+++ .||. ..+..++..++....... .......+...|++++|||.++. .... .+.
T Consensus 213 ~L~~~k~id~~l~~lGF~~~~i~~i~~~i~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~~~~~~~---l~~ 289 (1176)
T PRK09401 213 VLKSSKNIDKLLYLLGFSEEDIEKAMELIRLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATGRPRGNRVK---LFR 289 (1176)
T ss_pred hhhcccchhhHHHhCCCCHHHHHHHHHhcccccccchhhhHHHHHHHhhhhcccCCceEEEEeCCCCccchHHH---Hhh
Confidence 986 4564 677888877764111000 00000011267899999999864 3221 112
Q ss_pred CCeEEccCCCcCCCCccccccCCcccchhhhccCCCccccccccccccccceeeeEEEecCCchHHHHHHHHHhhhcccc
Q 010357 239 TPVLIGLDEKKLPEDKSHVRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEV 318 (512)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~ 318 (512)
....+.+... .....++.+.+...+ ++...+..++..+
T Consensus 290 ~ll~~~v~~~-----------------------------------~~~~rnI~~~yi~~~--~k~~~L~~ll~~l----- 327 (1176)
T PRK09401 290 ELLGFEVGSP-----------------------------------VFYLRNIVDSYIVDE--DSVEKLVELVKRL----- 327 (1176)
T ss_pred ccceEEecCc-----------------------------------ccccCCceEEEEEcc--cHHHHHHHHHHhc-----
Confidence 2211111111 012345666666554 5667777777643
Q ss_pred CceEEEEeecchh---hhhHHHhhhhhcCCCCCCChhHHHhhhhccceeeecCCCCHHHHHHHHHhhhcCCCcEEEe---
Q 010357 319 SQKLVVFFSTCDA---VDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLS--- 392 (512)
Q Consensus 319 ~~~~lvf~~~~~~---~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~l~g~~~~~~r~~~~~~f~~~~~~vLva--- 392 (512)
+.++||||+++.. ++.+++.|... ++++..+||+| + ..+++|++|+.+||||
T Consensus 328 ~~~~LIFv~t~~~~~~ae~l~~~L~~~-----------------gi~v~~~hg~l----~-~~l~~F~~G~~~VLVatas 385 (1176)
T PRK09401 328 GDGGLIFVPSDKGKEYAEELAEYLEDL-----------------GINAELAISGF----E-RKFEKFEEGEVDVLVGVAS 385 (1176)
T ss_pred CCCEEEEEecccChHHHHHHHHHHHHC-----------------CCcEEEEeCcH----H-HHHHHHHCCCCCEEEEecC
Confidence 3589999999888 99999999987 88999999999 2 2359999999999999
Q ss_pred -ecccccCCCCCC-CcEEEEeCCCC------ChhHHHHhhhhcccC
Q 010357 393 -TDVAARGLDFPK-VKCIIQYDSAG------EATEYVHRVGRTARL 430 (512)
Q Consensus 393 -T~~~~~Gldip~-~~~VI~~~~p~------s~~~~~Q~~GRagR~ 430 (512)
|+++++|+|+|+ +++||+|+.|. ....+.||+||+.+.
T Consensus 386 ~tdv~aRGIDiP~~IryVI~y~vP~~~~~~~~~~~~~~~~~r~~~~ 431 (1176)
T PRK09401 386 YYGVLVRGIDLPERIRYAIFYGVPKFKFSLEEELAPPFLLLRLLSL 431 (1176)
T ss_pred CCCceeecCCCCcceeEEEEeCCCCEEEeccccccCHHHHHHHHhh
Confidence 689999999999 89999999998 678899999999643
No 63
>PRK14701 reverse gyrase; Provisional
Probab=100.00 E-value=1.6e-37 Score=339.25 Aligned_cols=349 Identities=19% Similarity=0.237 Sum_probs=247.6
Q ss_pred HHHHHHHHHhcCCCCCcHHHHHHHHHhhcCCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcHHHH
Q 010357 27 STLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELC 106 (512)
Q Consensus 27 ~~~~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~ 106 (512)
.++.+.+++.+|| +|+++|+++++.+++|++++++||||+|||++++++++.... .+.+++|++||++|+
T Consensus 66 ~~~~~~f~~~~G~-~pt~iQ~~~i~~il~G~d~li~APTGsGKTl~~~~~al~~~~---------~g~~aLVl~PTreLa 135 (1638)
T PRK14701 66 EEFEEFFEKITGF-EFWSIQKTWAKRILRGKSFSIVAPTGMGKSTFGAFIALFLAL---------KGKKCYIILPTTLLV 135 (1638)
T ss_pred HHHHHHHHHhhCC-CCCHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHHHHHh---------cCCeEEEEECHHHHH
Confidence 5677778777899 599999999999999999999999999999966665554422 266899999999999
Q ss_pred HHHHHHHHHHHhhcCC-cceEEEeCCCchHHHH---HHHcC-CCCEEEeCChHHHHHHhhcCCCcCCceeEEEEcchhHH
Q 010357 107 LQVYEILHKLLHRFHW-IVPGYVMGGENRSKEK---ARLRK-GISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRI 181 (512)
Q Consensus 107 ~q~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~---~~~~~-~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lV~DEah~l 181 (512)
.|+.+.++.++...+. ..+..+.++.+..... ..+.. .++|+|+||++|.+.+... . ..+++++|+||||++
T Consensus 136 ~Qi~~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL~~~~~~l--~-~~~i~~iVVDEAD~m 212 (1638)
T PRK14701 136 KQTVEKIESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQFLARNFPEM--K-HLKFDFIFVDDVDAF 212 (1638)
T ss_pred HHHHHHHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCchhHHhHHHH--h-hCCCCEEEEECceec
Confidence 9999999998876543 3344556666655442 33444 4899999999998876542 1 157899999999999
Q ss_pred Hh-----------cCchHHHHH-HHHHhccCCC---CC-------CCCCCccccccee-EEEEEEecchhhHHHHHhhcC
Q 010357 182 LE-----------LGFGKEIEE-ILDILGSRNI---GS-------IGEGNEVSNVKRQ-NLLLSATLNEKVNHLAKISLE 238 (512)
Q Consensus 182 ~~-----------~~~~~~~~~-i~~~~~~~~~---~~-------~~~~~~~~~~~~~-~i~~SAT~~~~~~~~~~~~~~ 238 (512)
++ .+|...+.. ++..++.... .. ........+...+ ++++|||.++..... . .+.
T Consensus 213 l~~~knid~~L~llGF~~e~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ll~~SAT~~~r~~~~-~-l~~ 290 (1638)
T PRK14701 213 LKASKNIDRSLQLLGFYEEIIEKAWKIIYLKKQGNIEDAMEKREILNKEIEKIGNKIGCLIVASATGKAKGDRV-K-LYR 290 (1638)
T ss_pred cccccccchhhhcCCChHHHHHHHHHhhhcccccccchhhhhhhhhhhhhhhcCCCccEEEEEecCCCchhHHH-H-Hhh
Confidence 86 367666653 2222210000 00 0000000011334 678999998532111 1 223
Q ss_pred CCeEEccCCCcCCCCccccccCCcccchhhhccCCCccccccccccccccceeeeEEEecCCchHHHHHHHHHhhhcccc
Q 010357 239 TPVLIGLDEKKLPEDKSHVRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEV 318 (512)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~ 318 (512)
++..+.+.... ....++.+.+.......+ ..+..+++..
T Consensus 291 ~~l~f~v~~~~-----------------------------------~~lr~i~~~yi~~~~~~k-~~L~~ll~~~----- 329 (1638)
T PRK14701 291 ELLGFEVGSGR-----------------------------------SALRNIVDVYLNPEKIIK-EHVRELLKKL----- 329 (1638)
T ss_pred cCeEEEecCCC-----------------------------------CCCCCcEEEEEECCHHHH-HHHHHHHHhC-----
Confidence 33333322221 123456666665543333 4566666543
Q ss_pred CceEEEEeecchhh---hhHHHhhhhhcCCCCCCChhHHHhhhhccceeeecCCCCHHHHHHHHHhhhcCCCcEEEeec-
Q 010357 319 SQKLVVFFSTCDAV---DFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTD- 394 (512)
Q Consensus 319 ~~~~lvf~~~~~~~---~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~l~g~~~~~~r~~~~~~f~~~~~~vLvaT~- 394 (512)
+..+||||++++.+ +.+++.|.+. ++++..+||+ |...+++|++|+.+|||||+
T Consensus 330 g~~gIVF~~t~~~~e~ae~la~~L~~~-----------------Gi~a~~~h~~-----R~~~l~~F~~G~~~VLVaT~s 387 (1638)
T PRK14701 330 GKGGLIFVPIDEGAEKAEEIEKYLLED-----------------GFKIELVSAK-----NKKGFDLFEEGEIDYLIGVAT 387 (1638)
T ss_pred CCCeEEEEeccccchHHHHHHHHHHHC-----------------CCeEEEecch-----HHHHHHHHHcCCCCEEEEecC
Confidence 46899999998864 8999999887 8899999995 88999999999999999994
Q ss_pred ---ccccCCCCCC-CcEEEEeCCCC---ChhHHHHhh-------------hhcccCCCCccEEEecCccchhHHHHHHH
Q 010357 395 ---VAARGLDFPK-VKCIIQYDSAG---EATEYVHRV-------------GRTARLGERGDSLLFLQPVEMDYLQDLEK 453 (512)
Q Consensus 395 ---~~~~Gldip~-~~~VI~~~~p~---s~~~~~Q~~-------------GRagR~g~~g~~~~~~~~~~~~~~~~l~~ 453 (512)
+++||||+|+ +++||+||.|. +...|.|.. ||+||.|.++.+...+...+...++.+.+
T Consensus 388 ~~gvaaRGIDiP~~Vryvi~~~~Pk~~~~~e~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~~~~~~~~~~~~~~~l~ 466 (1638)
T PRK14701 388 YYGTLVRGLDLPERIRFAVFYGVPKFRFRVDLEDPTIYRILGLLSEILKIEEELKEGIPIEGVLDVFPEDVEFLRSILK 466 (1638)
T ss_pred CCCeeEecCccCCccCEEEEeCCCCCCcchhhcccchhhhhcchHHHHHhhhhcccCCcchhHHHhHHHHHHHHHHHhc
Confidence 8999999998 99999999999 888776665 99999999888876666777666666655
No 64
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=100.00 E-value=8.4e-38 Score=311.26 Aligned_cols=395 Identities=21% Similarity=0.233 Sum_probs=276.7
Q ss_pred HhcCCCCCcHHHHHHHHHhh-cCCCEEEEccCCChHhHHHHHHHHHHHhhcCC-CCCCCCCceEEEEcCcHHHHHHHHHH
Q 010357 35 ERLGFEAPTKVQAQAIPVIL-SGRHVLVNAATGTGKTVAYLAPIINHLQSYSP-RIDRSSGTFALVLVPTRELCLQVYEI 112 (512)
Q Consensus 35 ~~~~~~~~~~~Q~~~~~~~~-~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~-~~~~~~~~~~lil~Pt~~L~~q~~~~ 112 (512)
..|+|.++..+|.+++|.+. ++.|.|+|||||||||..|++.++..+..... ..-...+.+++||+|+++||.++.+.
T Consensus 104 ~~f~f~~fN~iQS~vFp~aY~SneNMLIcAPTGsGKT~la~L~ILr~ik~~~~~~~i~k~~fKiVYIaPmKALa~Em~~~ 183 (1230)
T KOG0952|consen 104 GFFSFEEFNRIQSEVFPVAYKSNENMLICAPTGSGKTVLAELCILRTIKEHEEQGDIAKDDFKIVYIAPMKALAAEMVDK 183 (1230)
T ss_pred hcccHHHHHHHHHHhhhhhhcCCCCEEEECCCCCCchHHHHHHHHHHHHhhccccccccCCceEEEEechHHHHHHHHHH
Confidence 56789999999999999887 56799999999999999999999999886322 12224578999999999999999988
Q ss_pred HHHHHhhcCCcceEEEeCCCchHHHHHHHcCCCCEEEeCChHHHHHHhhcC--CCcCCceeEEEEcchhHHHhcCchHHH
Q 010357 113 LHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTS--SFLHTNLRWIIFDEADRILELGFGKEI 190 (512)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~--~~~~~~~~~lV~DEah~l~~~~~~~~~ 190 (512)
+.+-+..++ +.+.-++|+....... -..++|+|+|||++--...+.. .-.++.+++||+||+|.+ ...+++.+
T Consensus 184 ~~kkl~~~g-i~v~ELTGD~ql~~te---i~~tqiiVTTPEKwDvvTRk~~~d~~l~~~V~LviIDEVHlL-hd~RGpvl 258 (1230)
T KOG0952|consen 184 FSKKLAPLG-ISVRELTGDTQLTKTE---IADTQIIVTTPEKWDVVTRKSVGDSALFSLVRLVIIDEVHLL-HDDRGPVL 258 (1230)
T ss_pred Hhhhccccc-ceEEEecCcchhhHHH---HHhcCEEEecccceeeeeeeeccchhhhhheeeEEeeeehhh-cCcccchH
Confidence 877776655 3444455443332221 2357999999999844333221 234568999999999955 45599999
Q ss_pred HHHHHHhccCCCCCCCCCCcccccceeEEEEEEecchhhHHHHHhhcCC-CeEEccCCCcCCCCccccccCCcccchhhh
Q 010357 191 EEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLET-PVLIGLDEKKLPEDKSHVRFGSLESDVKEE 269 (512)
Q Consensus 191 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (512)
+.|+.+....- +......+++++|||+|+-.+....+..+. ..+..++....+
T Consensus 259 EtiVaRtlr~v--------essqs~IRivgLSATlPN~eDvA~fL~vn~~~glfsFd~~yRP------------------ 312 (1230)
T KOG0952|consen 259 ETIVARTLRLV--------ESSQSMIRIVGLSATLPNYEDVARFLRVNPYAGLFSFDQRYRP------------------ 312 (1230)
T ss_pred HHHHHHHHHHH--------HhhhhheEEEEeeccCCCHHHHHHHhcCCCccceeeecccccc------------------
Confidence 99988876321 112227899999999998544433333332 234444444322
Q ss_pred ccCCCccccccccccccccceeeeEEEecCC-------chHHHHHHHHHhhhccccCceEEEEeecchhhhhHHHhhhhh
Q 010357 270 VEHPSTTMRSTTEDFKLPAQLVQRYVKVPCG-------SRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEF 342 (512)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~k~~~l~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~ 342 (512)
..+.+.++..... .--....+.+.+.+ ..+.+++|||.++..+...++.|.+.
T Consensus 313 ------------------vpL~~~~iG~k~~~~~~~~~~~d~~~~~kv~e~~--~~g~qVlvFvhsR~~Ti~tA~~l~~~ 372 (1230)
T KOG0952|consen 313 ------------------VPLTQGFIGIKGKKNRQQKKNIDEVCYDKVVEFL--QEGHQVLVFVHSRNETIRTAKKLRER 372 (1230)
T ss_pred ------------------cceeeeEEeeecccchhhhhhHHHHHHHHHHHHH--HcCCeEEEEEecChHHHHHHHHHHHH
Confidence 2222222222211 11122233333332 34789999999999999999999775
Q ss_pred cCCCCC-------CChhHHHhhhhccceeeecCCCCHHHHHHHHHhhhcCCCcEEEeecccccCCCCCCCcEEEE----e
Q 010357 343 QWSPHS-------QPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQ----Y 411 (512)
Q Consensus 343 ~~~~~~-------~~~~~~~~~~~~~~v~~l~g~~~~~~r~~~~~~f~~~~~~vLvaT~~~~~Gldip~~~~VI~----~ 411 (512)
....+. .....+.+++ ..++.++|++|..++|..+++.|..|.++||+||.++++|+|+|+-.++|- |
T Consensus 373 a~~~g~~~~f~~~~~~k~l~elf-~~g~~iHhAGm~r~DR~l~E~~F~~G~i~vL~cTaTLAwGVNLPA~aViIKGT~~y 451 (1230)
T KOG0952|consen 373 AETNGEKDLFLPSPRNKQLKELF-QQGMGIHHAGMLRSDRQLVEKEFKEGHIKVLCCTATLAWGVNLPAYAVIIKGTQVY 451 (1230)
T ss_pred HHhcCcccccCCChhhHHHHHHH-HhhhhhcccccchhhHHHHHHHHhcCCceEEEecceeeeccCCcceEEEecCCccc
Confidence 433322 1223445555 568889999999999999999999999999999999999999996554442 2
Q ss_pred CCC------CChhHHHHhhhhcccC--CCCccEEEecCccchhHHHHHHHcCCCCCccChhhHhhhccccCCCCcccc
Q 010357 412 DSA------GEATEYVHRVGRTARL--GERGDSLLFLQPVEMDYLQDLEKHGVSLTEYPLLKVLDSFPLYGQKPRVKK 481 (512)
Q Consensus 412 ~~p------~s~~~~~Q~~GRagR~--g~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 481 (512)
+.. -+..+.+|.+|||||- ...|.++++-+.+..+.+..|...--+++.--+..+.|.+.++...+++.+
T Consensus 452 dsskg~f~dlgilDVlQifGRAGRPqFd~~G~giIiTt~dkl~~Y~sLl~~~~piES~~~~~L~dnLnAEi~LgTVt~ 529 (1230)
T KOG0952|consen 452 DSSKGSFVDLGILDVLQIFGRAGRPQFDSSGEGIIITTRDKLDHYESLLTGQNPIESQLLPCLIDNLNAEISLGTVTN 529 (1230)
T ss_pred ccccCceeeehHHHHHHHHhccCCCCCCCCceEEEEecccHHHHHHHHHcCCChhHHHHHHHHHHhhhhheeeceeec
Confidence 222 2566789999999995 356899999888888888888876666666666777777777666655433
No 65
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=100.00 E-value=4.2e-37 Score=319.76 Aligned_cols=352 Identities=25% Similarity=0.300 Sum_probs=262.8
Q ss_pred CCHHHHHHHHHhcCCCCCcHHHHHHHHHhhcCCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcHH
Q 010357 25 LHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRE 104 (512)
Q Consensus 25 l~~~~~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~ 104 (512)
....+...+.+. |+.+|+.||.+|+..+.+|+|++|+.|||||||.+|++|+++.+.+ ....++|++.||++
T Consensus 55 ~~~~l~~~l~~~-g~~~lY~HQ~~A~~~~~~G~~vvVtTgTgSGKTe~FllPIld~~l~-------~~~a~AL~lYPtnA 126 (851)
T COG1205 55 RDESLKSALVKA-GIERLYSHQVDALRLIREGRNVVVTTGTGSGKTESFLLPILDHLLR-------DPSARALLLYPTNA 126 (851)
T ss_pred hhhHHHHHHHHh-ccccccHHHHHHHHHHHCCCCEEEECCCCCchhHHHHHHHHHHHhh-------CcCccEEEEechhh
Confidence 344567888666 8888999999999999999999999999999999999999999988 33457899999999
Q ss_pred HHHHHHHHHHHHHhhcCCcceEEEeCCCchHHHH-HHHcCCCCEEEeCChHHHHHHhhcC---CCcCCceeEEEEcchhH
Q 010357 105 LCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEK-ARLRKGISILVATPGRLLDHLKHTS---SFLHTNLRWIIFDEADR 180 (512)
Q Consensus 105 L~~q~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~Iiv~Tp~~l~~~l~~~~---~~~~~~~~~lV~DEah~ 180 (512)
|++++.+.+.++...++..+....+.|+...... ......++|+++||++|...+.... .+.++++++||+||+|.
T Consensus 127 La~DQ~~rl~~~~~~~~~~v~~~~y~Gdt~~~~r~~~~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDElHt 206 (851)
T COG1205 127 LANDQAERLRELISDLPGKVTFGRYTGDTPPEERRAIIRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELHT 206 (851)
T ss_pred hHhhHHHHHHHHHHhCCCcceeeeecCCCChHHHHHHHhCCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEeccee
Confidence 9999999999999887743334455555555555 6677789999999999988554422 22456799999999997
Q ss_pred HHhcCchHHHHHHHHHhccCCCCCCCCCCcccccceeEEEEEEecchhhHHHHHhhcCCCeEEccCCCcCCCCccccccC
Q 010357 181 ILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLPEDKSHVRFG 260 (512)
Q Consensus 181 l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (512)
+.+. ++..+..+++++..... ..+..+|+|++|||+.+..+...+.....-... +.....+
T Consensus 207 YrGv-~GS~vA~llRRL~~~~~--------~~~~~~q~i~~SAT~~np~e~~~~l~~~~f~~~-v~~~g~~--------- 267 (851)
T COG1205 207 YRGV-QGSEVALLLRRLLRRLR--------RYGSPLQIICTSATLANPGEFAEELFGRDFEVP-VDEDGSP--------- 267 (851)
T ss_pred cccc-chhHHHHHHHHHHHHHh--------ccCCCceEEEEeccccChHHHHHHhcCCcceee-ccCCCCC---------
Confidence 6554 88888888887765321 222378999999999987766665544443331 2222111
Q ss_pred CcccchhhhccCCCccccccccccccccceeeeEEEec---------CCchHHHHHHHHHhhhccccCceEEEEeecchh
Q 010357 261 SLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVP---------CGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDA 331 (512)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~k~~~l~~~l~~~~~~~~~~~~lvf~~~~~~ 331 (512)
..........+ ...+......++.... ..+-++|+|+.++..
T Consensus 268 ---------------------------~~~~~~~~~~p~~~~~~~~~r~s~~~~~~~~~~~~~--~~~~~tL~F~~sr~~ 318 (851)
T COG1205 268 ---------------------------RGLRYFVRREPPIRELAESIRRSALAELATLAALLV--RNGIQTLVFFRSRKQ 318 (851)
T ss_pred ---------------------------CCceEEEEeCCcchhhhhhcccchHHHHHHHHHHHH--HcCceEEEEEehhhh
Confidence 11111111111 1133333333333332 346899999999999
Q ss_pred hhhHHHhhhhhcCCCCCCChhHHHhhhhccceeeecCCCCHHHHHHHHHhhhcCCCcEEEeecccccCCCCCCCcEEEEe
Q 010357 332 VDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQY 411 (512)
Q Consensus 332 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~l~g~~~~~~r~~~~~~f~~~~~~vLvaT~~~~~Gldip~~~~VI~~ 411 (512)
++.+.....+.....+ ..+...+..++|+|...+|..++..|++|+..++++|++++.|+|+.+++.||.+
T Consensus 319 ~e~~~~~~~~~~~~~~---------~~l~~~v~~~~~~~~~~er~~ie~~~~~g~~~~~~st~AlelgidiG~ldavi~~ 389 (851)
T COG1205 319 VELLYLSPRRRLVREG---------GKLLDAVSTYRAGLHREERRRIEAEFKEGELLGVIATNALELGIDIGSLDAVIAY 389 (851)
T ss_pred hhhhhhchhHHHhhcc---------hhhhhheeeccccCCHHHHHHHHHHHhcCCccEEecchhhhhceeehhhhhHhhc
Confidence 9999744433321110 0113568889999999999999999999999999999999999999999999999
Q ss_pred CCCC-ChhHHHHhhhhcccCCCCccEEEecC
Q 010357 412 DSAG-EATEYVHRVGRTARLGERGDSLLFLQ 441 (512)
Q Consensus 412 ~~p~-s~~~~~Q~~GRagR~g~~g~~~~~~~ 441 (512)
+.|. +..++.||+||+||.++.+..+.+..
T Consensus 390 g~P~~s~~~~~Q~~GRaGR~~~~~l~~~v~~ 420 (851)
T COG1205 390 GYPGVSVLSFRQRAGRAGRRGQESLVLVVLR 420 (851)
T ss_pred CCCCchHHHHHHhhhhccCCCCCceEEEEeC
Confidence 9999 99999999999999997776666655
No 66
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=1.4e-36 Score=302.15 Aligned_cols=337 Identities=21% Similarity=0.212 Sum_probs=246.1
Q ss_pred HhcCCCCCcHHHHHHHHHhhcCCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcHHHHHHHHHHHH
Q 010357 35 ERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILH 114 (512)
Q Consensus 35 ~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~ 114 (512)
..+|+. |+++|..+++.+++|+ |..+.||+|||++|++|++..... +..++|++||++||.|.++.+.
T Consensus 98 R~lg~~-p~~VQ~~~~~~ll~G~--Iae~~TGeGKTla~~lp~~~~al~---------G~~v~VvTptreLA~qdae~~~ 165 (656)
T PRK12898 98 RVLGQR-HFDVQLMGGLALLSGR--LAEMQTGEGKTLTATLPAGTAALA---------GLPVHVITVNDYLAERDAELMR 165 (656)
T ss_pred HHhCCC-CChHHHHHHHHHhCCC--eeeeeCCCCcHHHHHHHHHHHhhc---------CCeEEEEcCcHHHHHHHHHHHH
Confidence 345876 9999999999999997 999999999999999999987655 7789999999999999999999
Q ss_pred HHHhhcCCcceEEEeCCCchHHHHHHHcCCCCEEEeCChHH-HHHHhhc------------------------CCCcCCc
Q 010357 115 KLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRL-LDHLKHT------------------------SSFLHTN 169 (512)
Q Consensus 115 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~Iiv~Tp~~l-~~~l~~~------------------------~~~~~~~ 169 (512)
.++..++ +.++.+++|.+. .......++||+++|...| +++|... .......
T Consensus 166 ~l~~~lG-lsv~~i~gg~~~--~~r~~~y~~dIvygT~~e~~FDyLrd~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r~ 242 (656)
T PRK12898 166 PLYEALG-LTVGCVVEDQSP--DERRAAYGADITYCTNKELVFDYLRDRLALGQRASDARLALESLHGRSSRSTQLLLRG 242 (656)
T ss_pred HHHhhcC-CEEEEEeCCCCH--HHHHHHcCCCEEEECCCchhhhhccccccccccccchhhhhhhhccccCchhhhcccc
Confidence 9998877 566777787653 3344456789999999877 4444331 0122356
Q ss_pred eeEEEEcchhHHHhc------------------CchHHHHHHHHHhccC-----------------------------CC
Q 010357 170 LRWIIFDEADRILEL------------------GFGKEIEEILDILGSR-----------------------------NI 202 (512)
Q Consensus 170 ~~~lV~DEah~l~~~------------------~~~~~~~~i~~~~~~~-----------------------------~~ 202 (512)
+.+.|+||+|.++=. ..+.....+...+... ..
T Consensus 243 ~~~aIvDEvDSiLiDeartpliis~~~~~~~~~~~y~~~~~~~~~l~~~~~y~~d~~~~~v~lt~~g~~~~e~~~~~l~~ 322 (656)
T PRK12898 243 LHFAIVDEADSVLIDEARTPLIISAPAKEADEAEVYRQALELAAQLKEGEDYTIDAAEKRIELTEAGRARIAELAESLPP 322 (656)
T ss_pred cceeEeecccceeeccCCCceEEECCCCCCchhHHHHHHHHHHHhcCCCCceEEECCCCeEEEcHHHHHHHHHHhCcchh
Confidence 789999999984311 0111111111111100 00
Q ss_pred CC---------------------------------------CC-----CCCc--------------cc------------
Q 010357 203 GS---------------------------------------IG-----EGNE--------------VS------------ 212 (512)
Q Consensus 203 ~~---------------------------------------~~-----~~~~--------------~~------------ 212 (512)
.+ .+ ..+. ..
T Consensus 323 ~~~~~~~~~~~i~~Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~w~~GLhQaieaKE~v~i~~e~~t~a~It~q 402 (656)
T PRK12898 323 AWRGAVRREELVRQALSALHLFRRDEHYIVRDGKVVIVDEFTGRVMPDRSWEDGLHQMIEAKEGCELTDPRETLARITYQ 402 (656)
T ss_pred hcccchHHHHHHHHHHHHHHHHhcCCceEEECCeEEEEECCCCeECCCCCcChHHHHHHHHhcCCCCCcCceeeeeehHH
Confidence 00 00 0000 00
Q ss_pred ---ccceeEEEEEEecchhhHHHHHhhcCCCeEEccCCCcCCCCccccccCCcccchhhhccCCCccccccccccccccc
Q 010357 213 ---NVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLPEDKSHVRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQ 289 (512)
Q Consensus 213 ---~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (512)
..-.++.+||||.+.....+...+..++..+...... ...
T Consensus 403 ~~Fr~Y~kl~GmTGTa~~~~~El~~~y~l~vv~IPt~kp~-------------------------------------~r~ 445 (656)
T PRK12898 403 RFFRRYLRLAGMTGTAREVAGELWSVYGLPVVRIPTNRPS-------------------------------------QRR 445 (656)
T ss_pred HHHHhhHHHhcccCcChHHHHHHHHHHCCCeEEeCCCCCc-------------------------------------cce
Confidence 0112578999999887777877777776665333321 122
Q ss_pred eeeeEEEecCCchHHHHHHHHHhhhccccCceEEEEeecchhhhhHHHhhhhhcCCCCCCChhHHHhhhhccceeeecCC
Q 010357 290 LVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGN 369 (512)
Q Consensus 290 ~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~l~g~ 369 (512)
..+.++.++..+|...+...+.... ..+.++||||+++..++.++..|... ++++..+||+
T Consensus 446 ~~~~~v~~t~~~K~~aL~~~i~~~~--~~~~pvLIft~t~~~se~L~~~L~~~-----------------gi~~~~Lhg~ 506 (656)
T PRK12898 446 HLPDEVFLTAAAKWAAVAARVRELH--AQGRPVLVGTRSVAASERLSALLREA-----------------GLPHQVLNAK 506 (656)
T ss_pred ecCCEEEeCHHHHHHHHHHHHHHHH--hcCCCEEEEeCcHHHHHHHHHHHHHC-----------------CCCEEEeeCC
Confidence 3344555667789999999888753 23578999999999999999999987 8899999999
Q ss_pred CCHHHHHHHHHhhhcCCCcEEEeecccccCCCCC---CCc-----EEEEeCCCCChhHHHHhhhhcccCCCCccEEEecC
Q 010357 370 MKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFP---KVK-----CIIQYDSAGEATEYVHRVGRTARLGERGDSLLFLQ 441 (512)
Q Consensus 370 ~~~~~r~~~~~~f~~~~~~vLvaT~~~~~Gldip---~~~-----~VI~~~~p~s~~~~~Q~~GRagR~g~~g~~~~~~~ 441 (512)
+...++..+ .|..+...|+|||+++++|+|++ ++. +||+++.|.+...|.||+||+||.|.+|.++.|++
T Consensus 507 ~~~rE~~ii--~~ag~~g~VlVATdmAgRGtDI~l~~~V~~~GGLhVI~~d~P~s~r~y~hr~GRTGRqG~~G~s~~~is 584 (656)
T PRK12898 507 QDAEEAAIV--ARAGQRGRITVATNMAGRGTDIKLEPGVAARGGLHVILTERHDSARIDRQLAGRCGRQGDPGSYEAILS 584 (656)
T ss_pred cHHHHHHHH--HHcCCCCcEEEEccchhcccCcCCccchhhcCCCEEEEcCCCCCHHHHHHhcccccCCCCCeEEEEEec
Confidence 765554444 45545557999999999999999 565 99999999999999999999999999999999999
Q ss_pred ccc
Q 010357 442 PVE 444 (512)
Q Consensus 442 ~~~ 444 (512)
.+|
T Consensus 585 ~eD 587 (656)
T PRK12898 585 LED 587 (656)
T ss_pred hhH
Confidence 866
No 67
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=100.00 E-value=9.5e-37 Score=296.62 Aligned_cols=304 Identities=21% Similarity=0.250 Sum_probs=204.9
Q ss_pred CEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHHhhcCCcceEEEeCCCch---
Q 010357 58 HVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENR--- 134 (512)
Q Consensus 58 ~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~g~~~--- 134 (512)
++++.+|||||||.+++++++..+.. ..+.+++|++|+++|+.|+++.+..++.. ..+...++...
T Consensus 1 ~vvi~apTGsGKT~~~~~~~l~~~~~-------~~~~~ii~v~P~~~L~~q~~~~l~~~f~~----~~~~~~~~~~~~~~ 69 (358)
T TIGR01587 1 LLVIEAPTGYGKTEAALLWALHSIKS-------QKADRVIIALPTRATINAMYRRAKELFGS----NLGLLHSSSSFKRI 69 (358)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHhh-------CCCCeEEEEeehHHHHHHHHHHHHHHhCc----ccEEeeccHHHHHH
Confidence 47899999999999999999987654 33568999999999999999999997542 12222222110
Q ss_pred ---------HHHHHHHc------CCCCEEEeCChHHHHHHhhc-CCC--cC--CceeEEEEcchhHHHhcCchHHHHHHH
Q 010357 135 ---------SKEKARLR------KGISILVATPGRLLDHLKHT-SSF--LH--TNLRWIIFDEADRILELGFGKEIEEIL 194 (512)
Q Consensus 135 ---------~~~~~~~~------~~~~Iiv~Tp~~l~~~l~~~-~~~--~~--~~~~~lV~DEah~l~~~~~~~~~~~i~ 194 (512)
........ -..+|+|+||++++..+... ... .+ -..+++|+||+|.+.+.+++. +..++
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~-l~~~l 148 (358)
T TIGR01587 70 KEMGDSEEFEHLFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFYDEYTLAL-ILAVL 148 (358)
T ss_pred hccCCchhHHHHHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCCCHHHHHH-HHHHH
Confidence 01111111 13579999999998876651 111 11 123789999999988765444 56666
Q ss_pred HHhccCCCCCCCCCCcccccceeEEEEEEecchhhHHHHHhhcCCCeEEccCCCcCCCCccccccCCcccchhhhccCCC
Q 010357 195 DILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLPEDKSHVRFGSLESDVKEEVEHPS 274 (512)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (512)
..++.. ..+++++|||+++.+..+.......+.........
T Consensus 149 ~~l~~~--------------~~~~i~~SATlp~~l~~~~~~~~~~~~~~~~~~~~------------------------- 189 (358)
T TIGR01587 149 EVLKDN--------------DVPILLMSATLPKFLKEYAEKIGYVEFNEPLDLKE------------------------- 189 (358)
T ss_pred HHHHHc--------------CCCEEEEecCchHHHHHHHhcCCCcccccCCCCcc-------------------------
Confidence 555421 67899999999976665554332111100000000
Q ss_pred ccccccccccccccceeeeEEEe--cCCchHHHHHHHHHhhhccccCceEEEEeecchhhhhHHHhhhhhcCCCCCCChh
Q 010357 275 TTMRSTTEDFKLPAQLVQRYVKV--PCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDM 352 (512)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~k~~~l~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~ 352 (512)
......+.+... ....+...+..++... ..++++||||++++.++.+++.|++...
T Consensus 190 -----------~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~---~~~~~~lVf~~t~~~~~~~~~~L~~~~~-------- 247 (358)
T TIGR01587 190 -----------ERRFERHRFIKIESDKVGEISSLERLLEFI---KKGGKIAIIVNTVDRAQEFYQQLKENAP-------- 247 (358)
T ss_pred -----------ccccccccceeeccccccCHHHHHHHHHHh---hCCCeEEEEECCHHHHHHHHHHHHhhcC--------
Confidence 000001111111 1123444555554432 3468999999999999999999987621
Q ss_pred HHHhhhhccceeeecCCCCHHHHHH----HHHhhhcCCCcEEEeecccccCCCCCCCcEEEEeCCCCChhHHHHhhhhcc
Q 010357 353 ELKQLFLRCKTFRLHGNMKQEDRRT----TFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRVGRTA 428 (512)
Q Consensus 353 ~~~~~~~~~~v~~l~g~~~~~~r~~----~~~~f~~~~~~vLvaT~~~~~Gldip~~~~VI~~~~p~s~~~~~Q~~GRag 428 (512)
...+..+||+++..+|.. +++.|++|+..+||||+++++|+|++ +++||++..| ..+|+||+||+|
T Consensus 248 -------~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~~~~ilvaT~~~~~GiDi~-~~~vi~~~~~--~~~~iqr~GR~g 317 (358)
T TIGR01587 248 -------EEEIMLLHSRFTEKDRAKKEAELLEEMKKNEKFVIVATQVIEASLDIS-ADVMITELAP--IDSLIQRLGRLH 317 (358)
T ss_pred -------CCeEEEEECCCCHHHHHHHHHHHHHHhcCCCCeEEEECcchhceeccC-CCEEEEcCCC--HHHHHHHhcccc
Confidence 336899999999999976 48899999999999999999999995 8888888765 789999999999
Q ss_pred cCCCCc----cEEEecCccc
Q 010357 429 RLGERG----DSLLFLQPVE 444 (512)
Q Consensus 429 R~g~~g----~~~~~~~~~~ 444 (512)
|.|+.+ .++++....+
T Consensus 318 R~g~~~~~~~~~~v~~~~~~ 337 (358)
T TIGR01587 318 RYGRKNGENFEVYIITIAPE 337 (358)
T ss_pred CCCCCCCCCCeEEEEeecCC
Confidence 988642 5666655443
No 68
>PRK13766 Hef nuclease; Provisional
Probab=100.00 E-value=2.5e-36 Score=321.43 Aligned_cols=358 Identities=22% Similarity=0.257 Sum_probs=240.0
Q ss_pred CCcHHHHHHHHHhhcCCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHHhhc
Q 010357 41 APTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRF 120 (512)
Q Consensus 41 ~~~~~Q~~~~~~~~~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~ 120 (512)
+||+||++++..++.+ ++++++|||+|||+++++++...+.. .+.++||++||++|+.|+.+.+..++...
T Consensus 15 ~~r~yQ~~~~~~~l~~-n~lv~~ptG~GKT~~a~~~i~~~l~~--------~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~ 85 (773)
T PRK13766 15 EARLYQQLLAATALKK-NTLVVLPTGLGKTAIALLVIAERLHK--------KGGKVLILAPTKPLVEQHAEFFRKFLNIP 85 (773)
T ss_pred CccHHHHHHHHHHhcC-CeEEEcCCCccHHHHHHHHHHHHHHh--------CCCeEEEEeCcHHHHHHHHHHHHHHhCCC
Confidence 5999999999988887 99999999999999999999887732 35689999999999999999999876432
Q ss_pred CCcceEEEeCCCchHHHHHHHcCCCCEEEeCChHHHHHHhhcCCCcCCceeEEEEcchhHHHhcCchHHHHHHHHHhccC
Q 010357 121 HWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILGSR 200 (512)
Q Consensus 121 ~~~~~~~~~~g~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lV~DEah~l~~~~~~~~~~~i~~~~~~~ 200 (512)
+ ..+..+.|+... .....+....+|+|+||+.+.+.+.. ..+.+.++++|||||||++.+......+...+.....
T Consensus 86 ~-~~v~~~~g~~~~-~~r~~~~~~~~iiv~T~~~l~~~l~~-~~~~~~~~~liVvDEaH~~~~~~~~~~i~~~~~~~~~- 161 (773)
T PRK13766 86 E-EKIVVFTGEVSP-EKRAELWEKAKVIVATPQVIENDLIA-GRISLEDVSLLIFDEAHRAVGNYAYVYIAERYHEDAK- 161 (773)
T ss_pred C-ceEEEEeCCCCH-HHHHHHHhCCCEEEECHHHHHHHHHc-CCCChhhCcEEEEECCccccccccHHHHHHHHHhcCC-
Confidence 1 234445554443 44555666789999999999887655 4556678999999999998754333333333322221
Q ss_pred CCCCCCCCCcccccceeEEEEEEecchhhHHH---HHhhcCCCeEEccCCCc-CCCCcc--cccc--CCcccchh-----
Q 010357 201 NIGSIGEGNEVSNVKRQNLLLSATLNEKVNHL---AKISLETPVLIGLDEKK-LPEDKS--HVRF--GSLESDVK----- 267 (512)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~---~~~~~~~~~~~~~~~~~-~~~~~~--~~~~--~~~~~~~~----- 267 (512)
.++++++|||+......+ ..........+...... +..... ...+ ..+.....
T Consensus 162 --------------~~~il~lTaTP~~~~~~i~~~~~~L~i~~v~~~~~~~~~v~~~~~~~~v~~~~v~l~~~~~~i~~~ 227 (773)
T PRK13766 162 --------------NPLVLGLTASPGSDEEKIKEVCENLGIEHVEVRTEDDPDVKPYVHKVKIEWVRVELPEELKEIRDL 227 (773)
T ss_pred --------------CCEEEEEEcCCCCCHHHHHHHHHhCCceEEEEcCCCChhHHhhhccceeEEEEeCCcHHHHHHHHH
Confidence 667999999986443322 22211111111000000 000000 0000 00000000
Q ss_pred ---------hh---ccCC-------------------------Cccc---------------------------------
Q 010357 268 ---------EE---VEHP-------------------------STTM--------------------------------- 277 (512)
Q Consensus 268 ---------~~---~~~~-------------------------~~~~--------------------------------- 277 (512)
.. .... ....
T Consensus 228 l~~~~~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~y~ 307 (773)
T PRK13766 228 LNEALKDRLKKLKELGVIVSISPDVSKKELLGLQKKLQQEIANDDSEGYEAISILAEAMKLRHAVELLETQGVEALRRYL 307 (773)
T ss_pred HHHHHHHHHHHHHHCCCcccCCCCcCHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHH
Confidence 00 0000 0000
Q ss_pred ---ccccc-------ccccc------cceeeeEEEecCCchHHHHHHHHHhhhccccCceEEEEeecchhhhhHHHhhhh
Q 010357 278 ---RSTTE-------DFKLP------AQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSE 341 (512)
Q Consensus 278 ---~~~~~-------~~~~~------~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~ 341 (512)
..... ...+. ..+...........|+..+.+++.+.+...++.++||||++++.++.+++.|..
T Consensus 308 ~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~pK~~~L~~il~~~~~~~~~~kvlIF~~~~~t~~~L~~~L~~ 387 (773)
T PRK13766 308 ERLREEARSSGGSKASKRLVEDPRFRKAVRKAKELDIEHPKLEKLREIVKEQLGKNPDSRIIVFTQYRDTAEKIVDLLEK 387 (773)
T ss_pred HHHHhhccccCCcHHHHHHHhCHHHHHHHHHHHhcccCChHHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHh
Confidence 00000 00000 000000001233578889999998887667789999999999999999999976
Q ss_pred hcCCCCCCChhHHHhhhhccceeeecCC--------CCHHHHHHHHHhhhcCCCcEEEeecccccCCCCCCCcEEEEeCC
Q 010357 342 FQWSPHSQPDMELKQLFLRCKTFRLHGN--------MKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDS 413 (512)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~v~~l~g~--------~~~~~r~~~~~~f~~~~~~vLvaT~~~~~Gldip~~~~VI~~~~ 413 (512)
. ++.+..+||. |+..+|..++++|++|+.++||||+++++|+|+|++++||+|++
T Consensus 388 ~-----------------~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~eGldi~~~~~VI~yd~ 450 (773)
T PRK13766 388 E-----------------GIKAVRFVGQASKDGDKGMSQKEQIEILDKFRAGEFNVLVSTSVAEEGLDIPSVDLVIFYEP 450 (773)
T ss_pred C-----------------CCceEEEEccccccccCCCCHHHHHHHHHHHHcCCCCEEEECChhhcCCCcccCCEEEEeCC
Confidence 5 5666777775 99999999999999999999999999999999999999999999
Q ss_pred CCChhHHHHhhhhcccCCCCccEEEecCcc
Q 010357 414 AGEATEYVHRVGRTARLGERGDSLLFLQPV 443 (512)
Q Consensus 414 p~s~~~~~Q~~GRagR~g~~g~~~~~~~~~ 443 (512)
|++...|+||+||+||.|. |.+++++..+
T Consensus 451 ~~s~~r~iQR~GR~gR~~~-~~v~~l~~~~ 479 (773)
T PRK13766 451 VPSEIRSIQRKGRTGRQEE-GRVVVLIAKG 479 (773)
T ss_pred CCCHHHHHHHhcccCcCCC-CEEEEEEeCC
Confidence 9999999999999999865 7777777653
No 69
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=100.00 E-value=1.7e-36 Score=312.57 Aligned_cols=341 Identities=21% Similarity=0.242 Sum_probs=259.8
Q ss_pred HHHHHHHHHhcCCCCCcHHHHHHHHHhhcCCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcHHHH
Q 010357 27 STLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELC 106 (512)
Q Consensus 27 ~~~~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~ 106 (512)
++....+...||...+|+.|.+++..++.|++++|.+|||.||+++|.+|++-. ++..++|.|..+|.
T Consensus 250 ~~~~~~l~~~Fg~~~FR~~Q~eaI~~~l~Gkd~fvlmpTG~GKSLCYQlPA~l~------------~gitvVISPL~SLm 317 (941)
T KOG0351|consen 250 KELELLLKEVFGHKGFRPNQLEAINATLSGKDCFVLMPTGGGKSLCYQLPALLL------------GGVTVVISPLISLM 317 (941)
T ss_pred hHHHHHHHHHhccccCChhHHHHHHHHHcCCceEEEeecCCceeeEeecccccc------------CCceEEeccHHHHH
Confidence 357778888899999999999999999999999999999999999999998754 55799999999999
Q ss_pred HHHHHHHHHHHhhcCCcceEEEeCCCchH---HHHHHHcC---CCCEEEeCChHHHHHHhhc-CCCcCCc---eeEEEEc
Q 010357 107 LQVYEILHKLLHRFHWIVPGYVMGGENRS---KEKARLRK---GISILVATPGRLLDHLKHT-SSFLHTN---LRWIIFD 176 (512)
Q Consensus 107 ~q~~~~~~~~~~~~~~~~~~~~~~g~~~~---~~~~~~~~---~~~Iiv~Tp~~l~~~l~~~-~~~~~~~---~~~lV~D 176 (512)
+.+...+.... +....+.++.... .....+.. .++|+..|||++...-.-. ....+.. +.++|+|
T Consensus 318 ~DQv~~L~~~~-----I~a~~L~s~q~~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~lal~vID 392 (941)
T KOG0351|consen 318 QDQVTHLSKKG-----IPACFLSSIQTAAERLAILQKLANGNPIIKILYVTPEKVVASEGLLESLADLYARGLLALFVID 392 (941)
T ss_pred HHHHHhhhhcC-----cceeeccccccHHHHHHHHHHHhCCCCeEEEEEeCHHHhhcccchhhHHHhccCCCeeEEEEec
Confidence 98887774431 2333333333332 33334433 3789999999885422111 1112223 7899999
Q ss_pred chhHHHhcC--chHHHHHHHHHhccCCCCCCCCCCcccccceeEEEEEEecchhhHH--HHHhhcCCCeEEccCCCcCCC
Q 010357 177 EADRILELG--FGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNH--LAKISLETPVLIGLDEKKLPE 252 (512)
Q Consensus 177 Eah~l~~~~--~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 252 (512)
|||+.++|+ |...+..+.....+.. ...++.+|||.+..+.. +..+.+.++.++.....
T Consensus 393 EAHCVSqWgHdFRp~Yk~l~~l~~~~~-------------~vP~iALTATAT~~v~~DIi~~L~l~~~~~~~~sfn---- 455 (941)
T KOG0351|consen 393 EAHCVSQWGHDFRPSYKRLGLLRIRFP-------------GVPFIALTATATERVREDVIRSLGLRNPELFKSSFN---- 455 (941)
T ss_pred HHHHhhhhcccccHHHHHHHHHHhhCC-------------CCCeEEeehhccHHHHHHHHHHhCCCCcceecccCC----
Confidence 999999986 6666666655444321 46899999999876544 44445555554322222
Q ss_pred CccccccCCcccchhhhccCCCccccccccccccccceeeeEEEecCCchHHHHHHHHHhhhccccCceEEEEeecchhh
Q 010357 253 DKSHVRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAV 332 (512)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~lvf~~~~~~~ 332 (512)
..++.-.+..-........+...+.. ..+...+||||.++..|
T Consensus 456 ----------------------------------R~NL~yeV~~k~~~~~~~~~~~~~~~---~~~~~s~IIYC~sr~~c 498 (941)
T KOG0351|consen 456 ----------------------------------RPNLKYEVSPKTDKDALLDILEESKL---RHPDQSGIIYCLSRKEC 498 (941)
T ss_pred ----------------------------------CCCceEEEEeccCccchHHHHHHhhh---cCCCCCeEEEeCCcchH
Confidence 11222222211112233333344443 45678999999999999
Q ss_pred hhHHHhhhhhcCCCCCCChhHHHhhhhccceeeecCCCCHHHHHHHHHhhhcCCCcEEEeecccccCCCCCCCcEEEEeC
Q 010357 333 DFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYD 412 (512)
Q Consensus 333 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~l~g~~~~~~r~~~~~~f~~~~~~vLvaT~~~~~Gldip~~~~VI~~~ 412 (512)
+.++..|... +.....||++|+..+|..+.+.|..++++|+|||=++++|+|.|+|..||||+
T Consensus 499 e~vs~~L~~~-----------------~~~a~~YHAGl~~~~R~~Vq~~w~~~~~~VivATVAFGMGIdK~DVR~ViH~~ 561 (941)
T KOG0351|consen 499 EQVSAVLRSL-----------------GKSAAFYHAGLPPKERETVQKAWMSDKIRVIVATVAFGMGIDKPDVRFVIHYS 561 (941)
T ss_pred HHHHHHHHHh-----------------chhhHhhhcCCCHHHHHHHHHHHhcCCCeEEEEEeeccCCCCCCceeEEEECC
Confidence 9999999998 77889999999999999999999999999999999999999999999999999
Q ss_pred CCCChhHHHHhhhhcccCCCCccEEEecCccchhHHHHHHHcC
Q 010357 413 SAGEATEYVHRVGRTARLGERGDSLLFLQPVEMDYLQDLEKHG 455 (512)
Q Consensus 413 ~p~s~~~~~Q~~GRagR~g~~g~~~~~~~~~~~~~~~~l~~~~ 455 (512)
.|.+.+.|.|.+|||||.|....|++|++..|...++.+...+
T Consensus 562 lPks~E~YYQE~GRAGRDG~~s~C~l~y~~~D~~~l~~ll~s~ 604 (941)
T KOG0351|consen 562 LPKSFEGYYQEAGRAGRDGLPSSCVLLYGYADISELRRLLTSG 604 (941)
T ss_pred CchhHHHHHHhccccCcCCCcceeEEecchhHHHHHHHHHHcc
Confidence 9999999999999999999999999999999999999888876
No 70
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=100.00 E-value=8.9e-36 Score=319.65 Aligned_cols=308 Identities=20% Similarity=0.249 Sum_probs=213.0
Q ss_pred HHHHHHHHHhcCCCCCcHHHHHHHHHhhcCCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcHHHH
Q 010357 27 STLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELC 106 (512)
Q Consensus 27 ~~~~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~ 106 (512)
.++.+.+.+..|+ +|+++|+.+++.++.|++++++||||+|||. |.+++...+.. .+.+++|++||++|+
T Consensus 65 ~~f~~~f~~~~g~-~p~~iQ~~~i~~il~G~d~vi~ApTGsGKT~-f~l~~~~~l~~--------~g~~vLIL~PTreLa 134 (1171)
T TIGR01054 65 KEFEEFFKKAVGS-EPWSIQKMWAKRVLRGDSFAIIAPTGVGKTT-FGLAMSLFLAK--------KGKRCYIILPTTLLV 134 (1171)
T ss_pred HHHHHHHHHhcCC-CCcHHHHHHHHHHhCCCeEEEECCCCCCHHH-HHHHHHHHHHh--------cCCeEEEEeCHHHHH
Confidence 4566667666676 4999999999999999999999999999997 55666555433 267899999999999
Q ss_pred HHHHHHHHHHHhhcCCcce--EEEeCCCchHHH---HHHHcC-CCCEEEeCChHHHHHHhhcCCCcCCceeEEEEcchhH
Q 010357 107 LQVYEILHKLLHRFHWIVP--GYVMGGENRSKE---KARLRK-GISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADR 180 (512)
Q Consensus 107 ~q~~~~~~~~~~~~~~~~~--~~~~~g~~~~~~---~~~~~~-~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lV~DEah~ 180 (512)
.|+.+.+..++...+.... +.++||...... ...+.. +++|+|+||++|.+.+.... . +++++|+||||+
T Consensus 135 ~Qi~~~l~~l~~~~~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~l~---~-~~~~iVvDEaD~ 210 (1171)
T TIGR01054 135 IQVAEKISSLAEKAGVGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNYDELG---P-KFDFIFVDDVDA 210 (1171)
T ss_pred HHHHHHHHHHHHhcCCceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHHhc---C-CCCEEEEeChHh
Confidence 9999999999876553332 345566655443 233333 48999999999998776522 1 789999999999
Q ss_pred HHh-----------cCchHH-HHHHHHHhccCCCCCC--------CCCCcccccce--eEEEEEEec-chhhHHHHHhhc
Q 010357 181 ILE-----------LGFGKE-IEEILDILGSRNIGSI--------GEGNEVSNVKR--QNLLLSATL-NEKVNHLAKISL 237 (512)
Q Consensus 181 l~~-----------~~~~~~-~~~i~~~~~~~~~~~~--------~~~~~~~~~~~--~~i~~SAT~-~~~~~~~~~~~~ 237 (512)
+++ .||... +..++..++....... ...... +... +++++|||. +..... ..+
T Consensus 211 ~L~~~k~vd~il~llGF~~e~i~~il~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~q~~li~~SAT~~p~~~~~---~l~ 286 (1171)
T TIGR01054 211 LLKASKNVDKLLKLLGFSEELIEKAWKLIRLRLKLYRALHAKKRLELLEAI-PGKKRGCLIVSSATGRPRGKRA---KLF 286 (1171)
T ss_pred hhhccccHHHHHHHcCCCHHHHHHHHHHhhhccccchHHHHHHHHHHHHhh-hhccCcEEEEEeCCCCccccHH---HHc
Confidence 987 456553 5555433221000000 000000 0122 367789994 443321 112
Q ss_pred CCCeEEccCCCcCCCCccccccCCcccchhhhccCCCccccccccccccccceeeeEEEecCCchHHHHHHHHHhhhccc
Q 010357 238 ETPVLIGLDEKKLPEDKSHVRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTE 317 (512)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~ 317 (512)
.+...+.+... .....++.+.+..... +...+.++++.+
T Consensus 287 r~ll~~~v~~~-----------------------------------~~~~r~I~~~~~~~~~--~~~~L~~ll~~l---- 325 (1171)
T TIGR01054 287 RELLGFEVGGG-----------------------------------SDTLRNVVDVYVEDED--LKETLLEIVKKL---- 325 (1171)
T ss_pred ccccceEecCc-----------------------------------cccccceEEEEEeccc--HHHHHHHHHHHc----
Confidence 22221211111 1123456666554332 344566666543
Q ss_pred cCceEEEEeecc---hhhhhHHHhhhhhcCCCCCCChhHHHhhhhccceeeecCCCCHHHHHHHHHhhhcCCCcEEEee-
Q 010357 318 VSQKLVVFFSTC---DAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLST- 393 (512)
Q Consensus 318 ~~~~~lvf~~~~---~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~l~g~~~~~~r~~~~~~f~~~~~~vLvaT- 393 (512)
+.++||||+++ +.++.+++.|... ++++..+||+|+ +.+++.|++|+++|||||
T Consensus 326 -~~~~IVFv~t~~~~~~a~~l~~~L~~~-----------------g~~a~~lhg~~~----~~~l~~Fr~G~~~vLVata 383 (1171)
T TIGR01054 326 -GTGGIVYVSIDYGKEKAEEIAEFLENH-----------------GVKAVAYHATKP----KEDYEKFAEGEIDVLIGVA 383 (1171)
T ss_pred -CCCEEEEEeccccHHHHHHHHHHHHhC-----------------CceEEEEeCCCC----HHHHHHHHcCCCCEEEEec
Confidence 46899999999 9999999999887 889999999997 368999999999999995
Q ss_pred ---cccccCCCCCC-CcEEEEeCCCC
Q 010357 394 ---DVAARGLDFPK-VKCIIQYDSAG 415 (512)
Q Consensus 394 ---~~~~~Gldip~-~~~VI~~~~p~ 415 (512)
+++++|+|+|+ +++||+||.|.
T Consensus 384 ~~tdv~aRGIDip~~V~~vI~~~~P~ 409 (1171)
T TIGR01054 384 SYYGTLVRGLDLPERVRYAVFLGVPK 409 (1171)
T ss_pred cccCcccccCCCCccccEEEEECCCC
Confidence 89999999999 89999988763
No 71
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=100.00 E-value=6.7e-37 Score=276.88 Aligned_cols=346 Identities=21% Similarity=0.269 Sum_probs=248.5
Q ss_pred HHHHHHHHHhcCCCC-CcHHHHHHHHHhhc-CCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcHH
Q 010357 27 STLCDQLRERLGFEA-PTKVQAQAIPVILS-GRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRE 104 (512)
Q Consensus 27 ~~~~~~l~~~~~~~~-~~~~Q~~~~~~~~~-~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~ 104 (512)
+.+..+|++.||+.. -++.|++|+..+.. .+++.|++|||+||+++|.+|++.+ +...|++.|..+
T Consensus 5 r~VreaLKK~FGh~kFKs~LQE~A~~c~VK~k~DVyVsMPTGaGKSLCyQLPaL~~------------~gITIV~SPLiA 72 (641)
T KOG0352|consen 5 RKVREALKKLFGHKKFKSRLQEQAINCIVKRKCDVYVSMPTGAGKSLCYQLPALVH------------GGITIVISPLIA 72 (641)
T ss_pred HHHHHHHHHHhCchhhcChHHHHHHHHHHhccCcEEEeccCCCchhhhhhchHHHh------------CCeEEEehHHHH
Confidence 456788889999884 58999999988775 5699999999999999999999875 457999999999
Q ss_pred HHHHHHHHHHHHHhhcCCcceEEEeCCCchHHHHHHH---cCCCCEEEeCChHHHH-----HHhhcCCCcCCceeEEEEc
Q 010357 105 LCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARL---RKGISILVATPGRLLD-----HLKHTSSFLHTNLRWIIFD 176 (512)
Q Consensus 105 L~~q~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~~Iiv~Tp~~l~~-----~l~~~~~~~~~~~~~lV~D 176 (512)
|..++.+.+..+--... ..+.-....+.......+ +.+..+++.|||.-.. +|+.. ..-..+.++|+|
T Consensus 73 LIkDQiDHL~~LKVp~~--SLNSKlSt~ER~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn~L--~~r~~L~Y~vVD 148 (641)
T KOG0352|consen 73 LIKDQIDHLKRLKVPCE--SLNSKLSTVERSRIMGDLAKEKPTIKMLYITPEGAATDGFQKLLNGL--ANRDVLRYIVVD 148 (641)
T ss_pred HHHHHHHHHHhcCCchh--HhcchhhHHHHHHHHHHHHhcCCceeEEEEchhhhhhhhHHHHHHHH--hhhceeeeEEec
Confidence 99999999888732111 001111111122222222 3346799999986432 22211 112357899999
Q ss_pred chhHHHhcC--chHHHHHHHHHhccCCCCCCCCCCcccccceeEEEEEEecchhhHH--HHHhhcCCCeEEccCCCcCCC
Q 010357 177 EADRILELG--FGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNH--LAKISLETPVLIGLDEKKLPE 252 (512)
Q Consensus 177 Eah~l~~~~--~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 252 (512)
|||+.++|| |.+.+-.+-... .... ...-+.+|||-++.++. +..+.+.+|..+.-.+.....
T Consensus 149 EAHCVSQWGHDFRPDYL~LG~LR-S~~~------------~vpwvALTATA~~~VqEDi~~qL~L~~PVAiFkTP~FR~N 215 (641)
T KOG0352|consen 149 EAHCVSQWGHDFRPDYLTLGSLR-SVCP------------GVPWVALTATANAKVQEDIAFQLKLRNPVAIFKTPTFRDN 215 (641)
T ss_pred hhhhHhhhccccCcchhhhhhHH-hhCC------------CCceEEeecccChhHHHHHHHHHhhcCcHHhccCcchhhh
Confidence 999999997 444333332211 1111 56678999998876644 556667777765444432221
Q ss_pred CccccccCCcccchhhhccCCCccccccccccccccceeeeEEEecCCchHHHHHHHHHhhhc---------cccCceEE
Q 010357 253 DKSHVRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCGSRLAVLLSILKHLFD---------TEVSQKLV 323 (512)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~---------~~~~~~~l 323 (512)
..+.+.+... -++-+..|.++....+- ....+..|
T Consensus 216 LFYD~~~K~~------------------------------------I~D~~~~LaDF~~~~LG~~~~~~~~~K~~~GCGI 259 (641)
T KOG0352|consen 216 LFYDNHMKSF------------------------------------ITDCLTVLADFSSSNLGKHEKASQNKKTFTGCGI 259 (641)
T ss_pred hhHHHHHHHH------------------------------------hhhHhHhHHHHHHHhcCChhhhhcCCCCcCcceE
Confidence 1111111100 01122233333322211 12346899
Q ss_pred EEeecchhhhhHHHhhhhhcCCCCCCChhHHHhhhhccceeeecCCCCHHHHHHHHHhhhcCCCcEEEeecccccCCCCC
Q 010357 324 VFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFP 403 (512)
Q Consensus 324 vf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~l~g~~~~~~r~~~~~~f~~~~~~vLvaT~~~~~Gldip 403 (512)
|||.++++||.++-.|.-. |++...+|.++...+|..+.+.+.+++..|++||..+++|||-|
T Consensus 260 VYCRTR~~cEq~AI~l~~~-----------------Gi~A~AYHAGLK~~ERTeVQe~WM~~~~PvI~AT~SFGMGVDKp 322 (641)
T KOG0352|consen 260 VYCRTRNECEQVAIMLEIA-----------------GIPAMAYHAGLKKKERTEVQEKWMNNEIPVIAATVSFGMGVDKP 322 (641)
T ss_pred EEeccHHHHHHHHHHhhhc-----------------CcchHHHhcccccchhHHHHHHHhcCCCCEEEEEeccccccCCc
Confidence 9999999999999999877 88999999999999999999999999999999999999999999
Q ss_pred CCcEEEEeCCCCChhHHHHhhhhcccCCCCccEEEecCccchhHHHHHHHc
Q 010357 404 KVKCIIQYDSAGEATEYVHRVGRTARLGERGDSLLFLQPVEMDYLQDLEKH 454 (512)
Q Consensus 404 ~~~~VI~~~~p~s~~~~~Q~~GRagR~g~~g~~~~~~~~~~~~~~~~l~~~ 454 (512)
++.+|||+++|.|..-|.|..|||||.|+++.|-++|+..|...++.|.+.
T Consensus 323 ~VRFViHW~~~qn~AgYYQESGRAGRDGk~SyCRLYYsR~D~~~i~FLi~~ 373 (641)
T KOG0352|consen 323 DVRFVIHWSPSQNLAGYYQESGRAGRDGKRSYCRLYYSRQDKNALNFLVSG 373 (641)
T ss_pred ceeEEEecCchhhhHHHHHhccccccCCCccceeeeecccchHHHHHHHhh
Confidence 999999999999999999999999999999999999999998888887763
No 72
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=100.00 E-value=4.5e-37 Score=278.47 Aligned_cols=320 Identities=24% Similarity=0.356 Sum_probs=238.2
Q ss_pred EEEEcCcHHHHHHHHHHHHHHHhhcCC--cceEEEeCCCchHHHHHHHcCCCCEEEeCChHHHHHHhhcCCCcCCceeEE
Q 010357 96 ALVLVPTRELCLQVYEILHKLLHRFHW--IVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWI 173 (512)
Q Consensus 96 ~lil~Pt~~L~~q~~~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~l 173 (512)
++|+-|+++|++|..+.++++-..... ...-.+.+|.....+...+..+.+|+|+||+++.+.+.. ....+....++
T Consensus 289 avivepsrelaEqt~N~i~~Fk~h~~np~~r~lLmiggv~~r~Q~~ql~~g~~ivvGtpgRl~~~is~-g~~~lt~crFl 367 (725)
T KOG0349|consen 289 AVIVEPSRELAEQTHNQIEEFKMHTSNPEVRSLLMIGGVLKRTQCKQLKDGTHIVVGTPGRLLQPISK-GLVTLTHCRFL 367 (725)
T ss_pred eeEecCcHHHHHHHHhhHHHHHhhcCChhhhhhhhhhhHHhHHHHHHhhcCceeeecCchhhhhhhhc-cceeeeeeEEE
Confidence 999999999999999977766543322 233366788888899999999999999999999998876 56677789999
Q ss_pred EEcchhHHHhcCchHHHHHHHHHhccCCCCCCCCCCcccccceeEEEEEEecc-hhhHHHHHhhcCCCeEEccCCCcCCC
Q 010357 174 IFDEADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLN-EKVNHLAKISLETPVLIGLDEKKLPE 252 (512)
Q Consensus 174 V~DEah~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (512)
|+||++.++..++...+..+...++..... ..+.|.+++|||+. -.+..+.+..+..|..+.+..+...+
T Consensus 368 vlDead~lL~qgy~d~I~r~h~qip~~tsd---------g~rlq~~vCsatlh~feVkk~~ervmhfptwVdLkgeD~vp 438 (725)
T KOG0349|consen 368 VLDEADLLLGQGYDDKIYRFHGQIPHMTSD---------GFRLQSPVCSATLHIFEVKKVGERVMHFPTWVDLKGEDLVP 438 (725)
T ss_pred EecchhhhhhcccHHHHHHHhccchhhhcC---------CcccccceeeeEEeEEEeeehhhhhccCceeEecccccccc
Confidence 999999999999999999998888865422 12789999999996 35677888888999999888877666
Q ss_pred CccccccCCcccchhhhccCCCcccccc---ccccccccceeeeEEEecCCchHHHHHHHHH-----hhhccccCceEEE
Q 010357 253 DKSHVRFGSLESDVKEEVEHPSTTMRST---TEDFKLPAQLVQRYVKVPCGSRLAVLLSILK-----HLFDTEVSQKLVV 324 (512)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~-----~~~~~~~~~~~lv 324 (512)
...+........................ ..+...+.+. +.+.......+++ ....+....++||
T Consensus 439 etvHhvv~lv~p~~d~sw~~lr~~i~td~vh~kdn~~pg~~--------Spe~~s~a~kilkgEy~v~ai~~h~mdkaii 510 (725)
T KOG0349|consen 439 ETVHHVVKLVCPSVDGSWCDLRQFIETDKVHTKDNLLPGQV--------SPENPSSATKILKGEYGVVAIRRHAMDKAII 510 (725)
T ss_pred hhhccceeecCCccCccHHHHhhhhccCCcccccccccccC--------CCCChhhhhHHhcCchhhhhhhhhccCceEE
Confidence 5554443333333322222211111000 0011111111 0111111111111 0111334679999
Q ss_pred EeecchhhhhHHHhhhhhcCCCCCCChhHHHhhhhccceeeecCCCCHHHHHHHHHhhhcCCCcEEEeecccccCCCCCC
Q 010357 325 FFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPK 404 (512)
Q Consensus 325 f~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~l~g~~~~~~r~~~~~~f~~~~~~vLvaT~~~~~Gldip~ 404 (512)
||.++..|..+.+++.+.+.. .+.++++||+..+.+|.+-+++|++++.+.||||+++++|+|+.+
T Consensus 511 fcrtk~dcDnLer~~~qkgg~--------------~~scvclhgDrkP~Erk~nle~Fkk~dvkflictdvaargldi~g 576 (725)
T KOG0349|consen 511 FCRTKQDCDNLERMMNQKGGK--------------HYSCVCLHGDRKPDERKANLESFKKFDVKFLICTDVAARGLDITG 576 (725)
T ss_pred EEeccccchHHHHHHHHcCCc--------------cceeEEEecCCChhHHHHHHHhhhhcCeEEEEEehhhhccccccC
Confidence 999999999999999887543 678999999999999999999999999999999999999999999
Q ss_pred CcEEEEeCCCCChhHHHHhhhhcccCCCCccEEEecCccchhH
Q 010357 405 VKCIIQYDSAGEATEYVHRVGRTARLGERGDSLLFLQPVEMDY 447 (512)
Q Consensus 405 ~~~VI~~~~p~s~~~~~Q~~GRagR~g~~g~~~~~~~~~~~~~ 447 (512)
+.++|+...|-....|+||+||+||+-+-|.++.++....+..
T Consensus 577 ~p~~invtlpd~k~nyvhrigrvgraermglaislvat~~ekv 619 (725)
T KOG0349|consen 577 LPFMINVTLPDDKTNYVHRIGRVGRAERMGLAISLVATVPEKV 619 (725)
T ss_pred CceEEEEecCcccchhhhhhhccchhhhcceeEEEeeccchhe
Confidence 9999999999999999999999999988898888866443333
No 73
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=8.1e-36 Score=303.05 Aligned_cols=341 Identities=18% Similarity=0.221 Sum_probs=244.2
Q ss_pred HHHHhcCCCCCcHHHHHHHHHhhcCCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcHHHHHHHHH
Q 010357 32 QLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYE 111 (512)
Q Consensus 32 ~l~~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~ 111 (512)
+....+|+. |+++|..+...+.+|+ +..+.||+|||+++++|++..... |..+.+++||+.||.|.++
T Consensus 70 a~~R~~g~~-p~~vQl~~~~~l~~G~--Iaem~TGeGKTL~a~lp~~l~al~---------G~~v~VvTpt~~LA~qd~e 137 (790)
T PRK09200 70 AAKRVLGMR-PYDVQLIGALVLHEGN--IAEMQTGEGKTLTATMPLYLNALE---------GKGVHLITVNDYLAKRDAE 137 (790)
T ss_pred HHHHHhCCC-CchHHHHhHHHHcCCc--eeeecCCCcchHHHHHHHHHHHHc---------CCCeEEEeCCHHHHHHHHH
Confidence 333445875 9999999999888885 999999999999999999866655 7789999999999999999
Q ss_pred HHHHHHhhcCCcceEEEeCCCchHHHHHHHcCCCCEEEeCChHH-HHHHhhc-----CCCcCCceeEEEEcchhHHHhcC
Q 010357 112 ILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRL-LDHLKHT-----SSFLHTNLRWIIFDEADRILELG 185 (512)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~Iiv~Tp~~l-~~~l~~~-----~~~~~~~~~~lV~DEah~l~~~~ 185 (512)
.+..+...++ +.++++.++......... ...++|+++||+++ .+.+... ....+..+.++|+||||+++=..
T Consensus 138 ~~~~l~~~lG-l~v~~i~g~~~~~~~r~~-~y~~dIvygT~~~l~fDyLrd~~~~~~~~~~~r~~~~~IvDEaDsiLiDe 215 (790)
T PRK09200 138 EMGQVYEFLG-LTVGLNFSDIDDASEKKA-IYEADIIYTTNSELGFDYLRDNLADSKEDKVQRPLNYAIIDEIDSILLDE 215 (790)
T ss_pred HHHHHHhhcC-CeEEEEeCCCCcHHHHHH-hcCCCEEEECCccccchhHHhccccchhhhcccccceEEEeccccceecc
Confidence 9999999877 566777777763444433 35689999999998 5544431 12345688999999999843210
Q ss_pred ----------------chHHHHHHHHHhccC-----------------------------C-------------------
Q 010357 186 ----------------FGKEIEEILDILGSR-----------------------------N------------------- 201 (512)
Q Consensus 186 ----------------~~~~~~~i~~~~~~~-----------------------------~------------------- 201 (512)
.+.....+...+... +
T Consensus 216 a~tpliisg~~~~~~~~y~~~~~~~~~l~~~~dy~~d~~~~~~~lt~~g~~~~e~~~~i~~l~~~~~~~~~~~i~~Al~A 295 (790)
T PRK09200 216 AQTPLIISGKPRVQSNLYHIAAKFVKTLEEDVDYEFDEEKKEVWLTDQGIEKAESYFGIDNLYSLEHQVLYRHIILALRA 295 (790)
T ss_pred CCCceeeeCCCccccHHHHHHHHHHHhcccCCCeEEecCCCeEEecHhHHHHHHHhcCCccccChhhhHHHHHHHHHHHH
Confidence 111111222111100 0
Q ss_pred -----------------------CCCC--CCCCc--------------cc---------------ccceeEEEEEEecch
Q 010357 202 -----------------------IGSI--GEGNE--------------VS---------------NVKRQNLLLSATLNE 227 (512)
Q Consensus 202 -----------------------~~~~--~~~~~--------------~~---------------~~~~~~i~~SAT~~~ 227 (512)
.+.. +..++ .. ..-.++.+||+|...
T Consensus 296 ~~~~~~d~dYiV~~~~v~ivD~~TGr~~~gr~~s~GlhQaieaKe~v~i~~e~~t~a~It~q~~fr~Y~kl~GmTGTa~t 375 (790)
T PRK09200 296 HVLFKRDVDYIVYDGEIVLVDRFTGRVLPGRKLQDGLHQAIEAKEGVEITEENRTMASITIQNLFRMFPKLSGMTGTAKT 375 (790)
T ss_pred HHHhhcCCcEEEECCEEEEEECCCCcCCCCCccChHHHHHHHHhcCCCcCCCceehhhhhHHHHHHHhHHHhccCCCChH
Confidence 0000 00000 00 001146788888755
Q ss_pred hhHHHHHhhcCCCeEEccCCCcCCCCccccccCCcccchhhhccCCCccccccccccccccceeeeEEEecCCchHHHHH
Q 010357 228 KVNHLAKISLETPVLIGLDEKKLPEDKSHVRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCGSRLAVLL 307 (512)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~ 307 (512)
....+.+.+.-+...+ ....+ ....-....+.....+|...+.
T Consensus 376 ~~~e~~~~Y~l~v~~I-Pt~kp------------------------------------~~r~d~~~~i~~~~~~K~~al~ 418 (790)
T PRK09200 376 EEKEFFEVYNMEVVQI-PTNRP------------------------------------IIRIDYPDKVFVTLDEKYKAVI 418 (790)
T ss_pred HHHHHHHHhCCcEEEC-CCCCC------------------------------------cccccCCCeEEcCHHHHHHHHH
Confidence 4444544433322221 11110 0011112233445677888888
Q ss_pred HHHHhhhccccCceEEEEeecchhhhhHHHhhhhhcCCCCCCChhHHHhhhhccceeeecCCCCHHHHHHHHHhhhcCCC
Q 010357 308 SILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKK 387 (512)
Q Consensus 308 ~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~l~g~~~~~~r~~~~~~f~~~~~ 387 (512)
..+.... ..+.++||||+++..++.++..|... ++++..+||++...++..+...+..|
T Consensus 419 ~~i~~~~--~~~~pvLIf~~t~~~se~l~~~L~~~-----------------gi~~~~L~~~~~~~e~~~i~~ag~~g-- 477 (790)
T PRK09200 419 EEVKERH--ETGRPVLIGTGSIEQSETFSKLLDEA-----------------GIPHNLLNAKNAAKEAQIIAEAGQKG-- 477 (790)
T ss_pred HHHHHHH--hcCCCEEEEeCcHHHHHHHHHHHHHC-----------------CCCEEEecCCccHHHHHHHHHcCCCC--
Confidence 8887652 34789999999999999999999988 88999999999999998888888776
Q ss_pred cEEEeecccccCCCC---CCCc-----EEEEeCCCCChhHHHHhhhhcccCCCCccEEEecCccc
Q 010357 388 ALLLSTDVAARGLDF---PKVK-----CIIQYDSAGEATEYVHRVGRTARLGERGDSLLFLQPVE 444 (512)
Q Consensus 388 ~vLvaT~~~~~Gldi---p~~~-----~VI~~~~p~s~~~~~Q~~GRagR~g~~g~~~~~~~~~~ 444 (512)
+|+|||+++++|+|+ |++. +||+++.|.+...|.||+||+||.|++|.++.|++..|
T Consensus 478 ~VlIATdmAgRG~DI~l~~~V~~~GGL~VI~~d~p~s~r~y~qr~GRtGR~G~~G~s~~~is~eD 542 (790)
T PRK09200 478 AVTVATNMAGRGTDIKLGEGVHELGGLAVIGTERMESRRVDLQLRGRSGRQGDPGSSQFFISLED 542 (790)
T ss_pred eEEEEccchhcCcCCCcccccccccCcEEEeccCCCCHHHHHHhhccccCCCCCeeEEEEEcchH
Confidence 799999999999999 6898 99999999999999999999999999999999998766
No 74
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=2.9e-36 Score=303.24 Aligned_cols=332 Identities=16% Similarity=0.183 Sum_probs=216.8
Q ss_pred CCcHHHHHHHHHhhc-C--CCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHH
Q 010357 41 APTKVQAQAIPVILS-G--RHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLL 117 (512)
Q Consensus 41 ~~~~~Q~~~~~~~~~-~--~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 117 (512)
.+||||++++..+.. + ++.++++|||+|||++.+..+... +.++||+||+..|+.||.+.+..++
T Consensus 255 ~LRpYQ~eAl~~~~~~gr~r~GIIvLPtGaGKTlvai~aa~~l------------~k~tLILvps~~Lv~QW~~ef~~~~ 322 (732)
T TIGR00603 255 QIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVTAACTV------------KKSCLVLCTSAVSVEQWKQQFKMWS 322 (732)
T ss_pred CcCHHHHHHHHHHHhcCCCCCcEEEeCCCCChHHHHHHHHHHh------------CCCEEEEeCcHHHHHHHHHHHHHhc
Confidence 489999999998873 3 478999999999999988766543 3459999999999999999999985
Q ss_pred hhcCCcceEEEeCCCchHHHHHHHcCCCCEEEeCChHHHHHHhhc-------CCCcCCceeEEEEcchhHHHhcCchHHH
Q 010357 118 HRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHT-------SSFLHTNLRWIIFDEADRILELGFGKEI 190 (512)
Q Consensus 118 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~-------~~~~~~~~~~lV~DEah~l~~~~~~~~~ 190 (512)
.. ....+..+.++... ......+|+|+|++.+.....+. ..+.-..+++||+||||++.. ...
T Consensus 323 ~l-~~~~I~~~tg~~k~-----~~~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH~lpA----~~f 392 (732)
T TIGR00603 323 TI-DDSQICRFTSDAKE-----RFHGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVHVVPA----AMF 392 (732)
T ss_pred CC-CCceEEEEecCccc-----ccccCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEccccccH----HHH
Confidence 42 22333444443221 11234689999999875432211 112224688999999999743 344
Q ss_pred HHHHHHhccCCCCCCCCCCcccccceeEEEEEEecchhhHHHHHh-hcCCCeEEccCCCcCCCCccccccC--Ccccchh
Q 010357 191 EEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKI-SLETPVLIGLDEKKLPEDKSHVRFG--SLESDVK 267 (512)
Q Consensus 191 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 267 (512)
..++..+. ....+++|||+...-.....+ .+-.|..+......+...+....+. .+.....
T Consensus 393 r~il~~l~----------------a~~RLGLTATP~ReD~~~~~L~~LiGP~vye~~~~eLi~~G~LA~~~~~ev~v~~t 456 (732)
T TIGR00603 393 RRVLTIVQ----------------AHCKLGLTATLVREDDKITDLNFLIGPKLYEANWMELQKKGFIANVQCAEVWCPMT 456 (732)
T ss_pred HHHHHhcC----------------cCcEEEEeecCcccCCchhhhhhhcCCeeeecCHHHHHhCCccccceEEEEEecCC
Confidence 45555554 446799999996432221111 1112333333332222111111110 0000000
Q ss_pred hhccCCCccccccccccccccceeeeEEEecCCchHHHHHHHHHhhhccccCceEEEEeecchhhhhHHHhhhhhcCCCC
Q 010357 268 EEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPH 347 (512)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~ 347 (512)
......+ ... . .. ...........|...+..++..+ ...+.++||||.+...++.++..|.
T Consensus 457 ~~~~~~y--l~~-~------~~-~k~~l~~~np~K~~~~~~Li~~h--e~~g~kiLVF~~~~~~l~~~a~~L~------- 517 (732)
T TIGR00603 457 PEFYREY--LRE-N------SR-KRMLLYVMNPNKFRACQFLIRFH--EQRGDKIIVFSDNVFALKEYAIKLG------- 517 (732)
T ss_pred HHHHHHH--HHh-c------ch-hhhHHhhhChHHHHHHHHHHHHH--hhcCCeEEEEeCCHHHHHHHHHHcC-------
Confidence 0000000 000 0 00 00011123346777777777654 2357899999999998888877662
Q ss_pred CCChhHHHhhhhccceeeecCCCCHHHHHHHHHhhhcC-CCcEEEeecccccCCCCCCCcEEEEeCCC-CChhHHHHhhh
Q 010357 348 SQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTE-KKALLLSTDVAARGLDFPKVKCIIQYDSA-GEATEYVHRVG 425 (512)
Q Consensus 348 ~~~~~~~~~~~~~~~v~~l~g~~~~~~r~~~~~~f~~~-~~~vLvaT~~~~~Gldip~~~~VI~~~~p-~s~~~~~Q~~G 425 (512)
+..+||+++..+|..+++.|++| .+++||+|+++.+|+|+|++++||+++.| .|...|+||+|
T Consensus 518 ---------------~~~I~G~ts~~ER~~il~~Fr~~~~i~vLv~SkVgdeGIDlP~a~vvI~~s~~~gS~~q~iQRlG 582 (732)
T TIGR00603 518 ---------------KPFIYGPTSQQERMQILQNFQHNPKVNTIFLSKVGDTSIDLPEANVLIQISSHYGSRRQEAQRLG 582 (732)
T ss_pred ---------------CceEECCCCHHHHHHHHHHHHhCCCccEEEEecccccccCCCCCCEEEEeCCCCCCHHHHHHHhc
Confidence 34579999999999999999975 78999999999999999999999999987 59999999999
Q ss_pred hcccCCCCccE-------EEecCccc
Q 010357 426 RTARLGERGDS-------LLFLQPVE 444 (512)
Q Consensus 426 RagR~g~~g~~-------~~~~~~~~ 444 (512)
|++|.+..|.+ +.+++++.
T Consensus 583 RilR~~~~~~~~~~~A~fY~lVs~dT 608 (732)
T TIGR00603 583 RILRAKKGSDAEEYNAFFYSLVSKDT 608 (732)
T ss_pred ccccCCCCCccccccceEEEEecCCc
Confidence 99999876654 67777755
No 75
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=100.00 E-value=1.9e-34 Score=290.11 Aligned_cols=336 Identities=17% Similarity=0.171 Sum_probs=230.4
Q ss_pred cCCCCCcHHHHHHHHHhhcCCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHH
Q 010357 37 LGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKL 116 (512)
Q Consensus 37 ~~~~~~~~~Q~~~~~~~~~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 116 (512)
+|+ +|++.|..+...+.+| .++.++||+|||++|++|++..... +..++|++|+++||.|+++++..+
T Consensus 67 lgl-rpydVQlig~l~l~~G--~Iaem~TGeGKTLta~Lpa~l~aL~---------g~~V~VVTpn~yLA~Rdae~m~~l 134 (762)
T TIGR03714 67 LGM-FPYDVQVLGAIVLHQG--NIAEMKTGEGKTLTATMPLYLNALT---------GKGAMLVTTNDYLAKRDAEEMGPV 134 (762)
T ss_pred cCC-CccHHHHHHHHHhcCC--ceeEecCCcchHHHHHHHHHHHhhc---------CCceEEeCCCHHHHHHHHHHHHHH
Confidence 354 3555555555554455 7999999999999999998766554 556999999999999999999999
Q ss_pred HhhcCCcceEEEeCCC---chHHHHHHHcCCCCEEEeCChHH-HHHHhhc-----CCCcCCceeEEEEcchhHHHhcC--
Q 010357 117 LHRFHWIVPGYVMGGE---NRSKEKARLRKGISILVATPGRL-LDHLKHT-----SSFLHTNLRWIIFDEADRILELG-- 185 (512)
Q Consensus 117 ~~~~~~~~~~~~~~g~---~~~~~~~~~~~~~~Iiv~Tp~~l-~~~l~~~-----~~~~~~~~~~lV~DEah~l~~~~-- 185 (512)
...++.. ++...++. ...........+++|+++||++| .+.+... ....+..+.++|+||||+++-..
T Consensus 135 ~~~LGLs-v~~~~~~s~~~~~~~~~rr~~y~~dIvygTp~~LgfDyLrD~l~~~~~~~~~r~l~~~IVDEaDsILiDear 213 (762)
T TIGR03714 135 YEWLGLT-VSLGVVDDPDEEYDANEKRKIYNSDIVYTTNSALGFDYLIDNLASNKEGKFLRPFNYVIVDEVDSVLLDSAQ 213 (762)
T ss_pred HhhcCCc-EEEEECCCCccccCHHHHHHhCCCCEEEECchhhhhhHHHHHhhcchhhcccccCcEEEEecHhhHhhccCc
Confidence 8888754 44444431 12222333346799999999999 5555321 23345688999999999974331
Q ss_pred --------------chHHHHHHHHHhccCC--------------------------------------------------
Q 010357 186 --------------FGKEIEEILDILGSRN-------------------------------------------------- 201 (512)
Q Consensus 186 --------------~~~~~~~i~~~~~~~~-------------------------------------------------- 201 (512)
.+.....+...+....
T Consensus 214 tpliisg~~~~~~~~y~~~~~~v~~l~~~~dy~~d~~~~~v~lt~~G~~~~e~~~~~~~l~~~~~~~~~~~i~~al~A~~ 293 (762)
T TIGR03714 214 TPLVISGAPRVQSNLYHIADTFVRTLKEDVDYIFKKDKKEVWLTDKGIEKAEQYFKIDNLYSEEYFELVRHINLALRAHY 293 (762)
T ss_pred CCeeeeCCCccchHHHHHHHHHHHhcCCCCCeEEEcCCCeeeecHhHHHHHHHHcCCCccCChhhHHHHHHHHHHHHHHH
Confidence 1112222222221100
Q ss_pred ---------------------CCCCC--CCCc--------------c---------------cccceeEEEEEEecchhh
Q 010357 202 ---------------------IGSIG--EGNE--------------V---------------SNVKRQNLLLSATLNEKV 229 (512)
Q Consensus 202 ---------------------~~~~~--~~~~--------------~---------------~~~~~~~i~~SAT~~~~~ 229 (512)
.+... ..++ . -..-.++.+||+|.....
T Consensus 294 ~~~~d~dYiV~~~~v~ivD~~TGr~~~gr~~~~GLhQaieaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~~~~ 373 (762)
T TIGR03714 294 LFKRNKDYVVTNGEVVLLDRITGRLLEGTKLQSGIHQAIEAKEHVELSKETRAMASITYQNLFKMFNKLSGMTGTGKVAE 373 (762)
T ss_pred HHhcCCceEEECCEEEEEECCCCcCCCCCCcchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHhhCchhcccCCCChhHH
Confidence 00000 0000 0 001124566777754444
Q ss_pred HHHHHhhcCCCeEEccCCCcCCCCccccccCCcccchhhhccCCCccccccccccccccceeeeEEEecCCchHHHHHHH
Q 010357 230 NHLAKISLETPVLIGLDEKKLPEDKSHVRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCGSRLAVLLSI 309 (512)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~ 309 (512)
..+.+.+.-....+ +.. . .....-....+.....+|..++...
T Consensus 374 ~Ef~~iY~l~v~~I--Pt~-----k------------------------------p~~r~d~~d~i~~~~~~K~~ai~~~ 416 (762)
T TIGR03714 374 KEFIETYSLSVVKI--PTN-----K------------------------------PIIRIDYPDKIYATLPEKLMATLED 416 (762)
T ss_pred HHHHHHhCCCEEEc--CCC-----C------------------------------CeeeeeCCCeEEECHHHHHHHHHHH
Confidence 44444332222111 111 0 0111112234455667899999998
Q ss_pred HHhhhccccCceEEEEeecchhhhhHHHhhhhhcCCCCCCChhHHHhhhhccceeeecCCCCHHHHHHHHHhhhcCCCcE
Q 010357 310 LKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKAL 389 (512)
Q Consensus 310 l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~l~g~~~~~~r~~~~~~f~~~~~~v 389 (512)
+.+.. ..+.++||||+++..++.++..|... ++++..+||++...++..+.+.++.| .|
T Consensus 417 i~~~~--~~~~pvLIft~s~~~se~ls~~L~~~-----------------gi~~~~L~a~~~~~E~~ii~~ag~~g--~V 475 (762)
T TIGR03714 417 VKEYH--ETGQPVLLITGSVEMSEIYSELLLRE-----------------GIPHNLLNAQNAAKEAQIIAEAGQKG--AV 475 (762)
T ss_pred HHHHh--hCCCCEEEEECcHHHHHHHHHHHHHC-----------------CCCEEEecCCChHHHHHHHHHcCCCC--eE
Confidence 88753 45689999999999999999999987 88999999999999998888888777 79
Q ss_pred EEeecccccCCCCC---------CCcEEEEeCCCCChhHHHHhhhhcccCCCCccEEEecCccc
Q 010357 390 LLSTDVAARGLDFP---------KVKCIIQYDSAGEATEYVHRVGRTARLGERGDSLLFLQPVE 444 (512)
Q Consensus 390 LvaT~~~~~Gldip---------~~~~VI~~~~p~s~~~~~Q~~GRagR~g~~g~~~~~~~~~~ 444 (512)
+|||+++++|+|+| ++.+|+++++|....+ .||+||+||.|.+|.++.|++.+|
T Consensus 476 lIATdmAgRGtDI~l~~~v~~~GGL~vIit~~~ps~rid-~qr~GRtGRqG~~G~s~~~is~eD 538 (762)
T TIGR03714 476 TVATSMAGRGTDIKLGKGVAELGGLAVIGTERMENSRVD-LQLRGRSGRQGDPGSSQFFVSLED 538 (762)
T ss_pred EEEccccccccCCCCCccccccCCeEEEEecCCCCcHHH-HHhhhcccCCCCceeEEEEEccch
Confidence 99999999999999 8999999999988766 999999999999999999999866
No 76
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=100.00 E-value=1.5e-34 Score=280.70 Aligned_cols=361 Identities=23% Similarity=0.276 Sum_probs=269.9
Q ss_pred CCcccCCCCHHHHHHHHHhcCCCCCcHHHHHHHHHhhcC------CCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCC
Q 010357 18 CSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSG------RHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRS 91 (512)
Q Consensus 18 ~~~~~~~l~~~~~~~l~~~~~~~~~~~~Q~~~~~~~~~~------~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~ 91 (512)
.+.-.++.+..+...+.+.++|. +|..|++++..|... .+-+++|.-|||||+++++.++..+..
T Consensus 240 ~~~~~~~~~~~l~~~~~~~LPF~-LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai~~-------- 310 (677)
T COG1200 240 RSGIPLPANGELLAKFLAALPFK-LTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAIEA-------- 310 (677)
T ss_pred ccCCCCCccHHHHHHHHHhCCCC-ccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHHHc--------
Confidence 34445667778888888899998 999999999998854 356999999999999999999999877
Q ss_pred CCceEEEEcCcHHHHHHHHHHHHHHHhhcCCcceEEEeCCCchHHH---HHHHcCC-CCEEEeCChHHHHHHhhcCCCcC
Q 010357 92 SGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKE---KARLRKG-ISILVATPGRLLDHLKHTSSFLH 167 (512)
Q Consensus 92 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~g~~~~~~---~~~~~~~-~~Iiv~Tp~~l~~~l~~~~~~~~ 167 (512)
|.++..++||--||.|.++.+.+++..++ +.+..+.|....... ...+..+ .+|+|+|..-+.+ ...+
T Consensus 311 -G~Q~ALMAPTEILA~QH~~~~~~~l~~~~-i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALiQd------~V~F 382 (677)
T COG1200 311 -GYQAALMAPTEILAEQHYESLRKWLEPLG-IRVALLTGSLKGKARKEILEQLASGEIDIVVGTHALIQD------KVEF 382 (677)
T ss_pred -CCeeEEeccHHHHHHHHHHHHHHHhhhcC-CeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchhhhc------ceee
Confidence 89999999999999999999999999888 556667665544333 3344444 9999999765533 2345
Q ss_pred CceeEEEEcchhHHHhcCchHHHHHHHHHhccCCCCCCCCCCcccccceeEEEEEEecchhhHHHHHhhcCCCeEEccCC
Q 010357 168 TNLRWIIFDEADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDE 247 (512)
Q Consensus 168 ~~~~~lV~DEah~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~ 247 (512)
.++.++|+||-|+ |+...+..+...... .+.++.|||||-+..-.+.-...-+...+.-
T Consensus 383 ~~LgLVIiDEQHR-----FGV~QR~~L~~KG~~--------------~Ph~LvMTATPIPRTLAlt~fgDldvS~IdE-- 441 (677)
T COG1200 383 HNLGLVIIDEQHR-----FGVHQRLALREKGEQ--------------NPHVLVMTATPIPRTLALTAFGDLDVSIIDE-- 441 (677)
T ss_pred cceeEEEEecccc-----ccHHHHHHHHHhCCC--------------CCcEEEEeCCCchHHHHHHHhccccchhhcc--
Confidence 6899999999999 998888888776531 4789999999876654444332222221110
Q ss_pred CcCCCCccccccCCcccchhhhccCCCccccccccccccccceeeeEEEecCCchHHHHHHHHHhhhccccCceEEEEee
Q 010357 248 KKLPEDKSHVRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFS 327 (512)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~lvf~~ 327 (512)
+|..-....-.+-..++...+++.+...+ ..+.++.+.|+
T Consensus 442 --------------------------------------lP~GRkpI~T~~i~~~~~~~v~e~i~~ei--~~GrQaY~VcP 481 (677)
T COG1200 442 --------------------------------------LPPGRKPITTVVIPHERRPEVYERIREEI--AKGRQAYVVCP 481 (677)
T ss_pred --------------------------------------CCCCCCceEEEEeccccHHHHHHHHHHHH--HcCCEEEEEec
Confidence 11111111112223356667777777664 35789999999
Q ss_pred cchhhhhHHHhhhhhcCCCCCCChhHHHhhhhccceeeecCCCCHHHHHHHHHhhhcCCCcEEEeecccccCCCCCCCcE
Q 010357 328 TCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKC 407 (512)
Q Consensus 328 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~l~g~~~~~~r~~~~~~f~~~~~~vLvaT~~~~~Gldip~~~~ 407 (512)
-+++.+.+- ++.. ......+...++++.+..+||.|...+++.++++|++|+.+|||||.+++.|||+|++++
T Consensus 482 LIeESE~l~--l~~a-----~~~~~~L~~~~~~~~vgL~HGrm~~~eKd~vM~~Fk~~e~~ILVaTTVIEVGVdVPnATv 554 (677)
T COG1200 482 LIEESEKLE--LQAA-----EELYEELKSFLPELKVGLVHGRMKPAEKDAVMEAFKEGEIDILVATTVIEVGVDVPNATV 554 (677)
T ss_pred cccccccch--hhhH-----HHHHHHHHHHcccceeEEEecCCChHHHHHHHHHHHcCCCcEEEEeeEEEecccCCCCeE
Confidence 988776332 1000 001223445577999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCC-ChhHHHHhhhhcccCCCCccEEEecCccc----hhHHHHHHHc--CCCCCccCh
Q 010357 408 IIQYDSAG-EATEYVHRVGRTARLGERGDSLLFLQPVE----MDYLQDLEKH--GVSLTEYPL 463 (512)
Q Consensus 408 VI~~~~p~-s~~~~~Q~~GRagR~g~~g~~~~~~~~~~----~~~~~~l~~~--~~~~~~~~~ 463 (512)
+|..++-. ...++-|--||+||.+..+.|++++.+.. .+.++.+... |..+.|.++
T Consensus 555 MVIe~AERFGLaQLHQLRGRVGRG~~qSyC~Ll~~~~~~~~a~~RL~im~~t~DGF~IAE~DL 617 (677)
T COG1200 555 MVIENAERFGLAQLHQLRGRVGRGDLQSYCVLLYKPPLSEVAKQRLKIMRETTDGFVIAEEDL 617 (677)
T ss_pred EEEechhhhhHHHHHHhccccCCCCcceEEEEEeCCCCChhHHHHHHHHHhcCCcceehhhhH
Confidence 99888643 67788899999999999999999998765 4566666653 777777665
No 77
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=100.00 E-value=1.8e-34 Score=276.87 Aligned_cols=313 Identities=19% Similarity=0.240 Sum_probs=199.5
Q ss_pred HHHHHHHHhhcCCC--EEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHHhhcC-
Q 010357 45 VQAQAIPVILSGRH--VLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFH- 121 (512)
Q Consensus 45 ~Q~~~~~~~~~~~~--~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~- 121 (512)
+|.++++.+.++++ +++++|||||||.+++++++.. ..++++++|+++|+.|+.+.+..++..+.
T Consensus 1 hQ~~~~~~~~~~~~~~~~i~apTGsGKT~~~~~~~l~~------------~~~~~~~~P~~aL~~~~~~~~~~~~~~~~~ 68 (357)
T TIGR03158 1 HQVATFEALQSKDADIIFNTAPTGAGKTLAWLTPLLHG------------ENDTIALYPTNALIEDQTEAIKEFVDVFKP 68 (357)
T ss_pred CHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHHc------------CCCEEEEeChHHHHHHHHHHHHHHHHhcCC
Confidence 69999999998864 7889999999999999998752 34589999999999999999999875432
Q ss_pred --CcceEEEeCCCchHHH--------------------H-HHHcCCCCEEEeCChHHHHHHhhc---CC----CcCCcee
Q 010357 122 --WIVPGYVMGGENRSKE--------------------K-ARLRKGISILVATPGRLLDHLKHT---SS----FLHTNLR 171 (512)
Q Consensus 122 --~~~~~~~~~g~~~~~~--------------------~-~~~~~~~~Iiv~Tp~~l~~~l~~~---~~----~~~~~~~ 171 (512)
...+. ...|....+. . ......++|+++||+.|..++... +. ..+.+++
T Consensus 69 ~~~~~v~-~~~g~~~~d~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p~illT~p~~l~~llr~~~~~~~~~~~~~~~~~~ 147 (357)
T TIGR03158 69 ERDVNLL-HVSKATLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTNPDIFVYLTRFAYIDRGDIAAGFYTKFS 147 (357)
T ss_pred CCCceEE-EecCCchHHHHHhhhhhcccCccchhhhhHHHHHhcCCCCEEEecHHHHHHHHhhhccCcccchhhhhcCCC
Confidence 12222 2333322210 0 111245789999999998765431 11 1246899
Q ss_pred EEEEcchhHHHhcCch-----HHHHHHHHHhccCCCCCCCCCCcccccceeEEEEEEecchhhHHHHHhh--cCCCeEEc
Q 010357 172 WIIFDEADRILELGFG-----KEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKIS--LETPVLIG 244 (512)
Q Consensus 172 ~lV~DEah~l~~~~~~-----~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~--~~~~~~~~ 244 (512)
++||||+|.+..+... .....++..... ..+++++|||+++.+....... +..+...
T Consensus 148 ~iV~DE~H~~~~~~~~~~~~~l~~~~~~~~~~~---------------~~~~i~lSAT~~~~~~~~l~~~~~~~~~~~~- 211 (357)
T TIGR03158 148 TVIFDEFHLYDAKQLVGMLFLLAYMQLIRFFEC---------------RRKFVFLSATPDPALILRLQNAKQAGVKIAP- 211 (357)
T ss_pred EEEEecccccCcccchhhhhhhHHHHHHHhhhc---------------CCcEEEEecCCCHHHHHHHHhccccCceeee-
Confidence 9999999987654321 122333332222 5699999999998766665543 2322211
Q ss_pred cCCCcCCCCccccccCCcccchhhhccCCCccccccccccc-cccceeeeEEEecCCchHHHH---HHHHHhhhccccCc
Q 010357 245 LDEKKLPEDKSHVRFGSLESDVKEEVEHPSTTMRSTTEDFK-LPAQLVQRYVKVPCGSRLAVL---LSILKHLFDTEVSQ 320 (512)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~k~~~l---~~~l~~~~~~~~~~ 320 (512)
+...... +.+ +++.........+. ....+.+.+.. ....+...+ .+.+.+.+...+++
T Consensus 212 v~g~~~~-------~~~----------~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~l~~l~~~i~~~~~~~~~~ 273 (357)
T TIGR03158 212 IDGEKYQ-------FPD----------NPELEADNKTQSFRPVLPPVELELIP-APDFKEEELSELAEEVIERFRQLPGE 273 (357)
T ss_pred ecCcccc-------cCC----------ChhhhccccccccceeccceEEEEEe-CCchhHHHHHHHHHHHHHHHhccCCC
Confidence 1111000 000 00000000000000 11123333332 223333333 33333333334567
Q ss_pred eEEEEeecchhhhhHHHhhhhhcCCCCCCChhHHHhhhhccceeeecCCCCHHHHHHHHHhhhcCCCcEEEeecccccCC
Q 010357 321 KLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGL 400 (512)
Q Consensus 321 ~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~l~g~~~~~~r~~~~~~f~~~~~~vLvaT~~~~~Gl 400 (512)
++||||+++..++.++..|+.... +..+..+||.+++.+|.+. ++..+||||+++++|+
T Consensus 274 k~LIf~nt~~~~~~l~~~L~~~~~---------------~~~~~~l~g~~~~~~R~~~------~~~~iLVaTdv~~rGi 332 (357)
T TIGR03158 274 RGAIILDSLDEVNRLSDLLQQQGL---------------GDDIGRITGFAPKKDRERA------MQFDILLGTSTVDVGV 332 (357)
T ss_pred eEEEEECCHHHHHHHHHHHhhhCC---------------CceEEeeecCCCHHHHHHh------ccCCEEEEecHHhccc
Confidence 999999999999999999987521 3567889999999988754 3689999999999999
Q ss_pred CCCCCcEEEEeCCCCChhHHHHhhhhcc
Q 010357 401 DFPKVKCIIQYDSAGEATEYVHRVGRTA 428 (512)
Q Consensus 401 dip~~~~VI~~~~p~s~~~~~Q~~GRag 428 (512)
|+|.. +|| ++ |.+..+|+||+||+|
T Consensus 333 Di~~~-~vi-~~-p~~~~~yiqR~GR~g 357 (357)
T TIGR03158 333 DFKRD-WLI-FS-ARDAAAFWQRLGRLG 357 (357)
T ss_pred CCCCc-eEE-EC-CCCHHHHhhhcccCC
Confidence 99976 566 44 889999999999997
No 78
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=100.00 E-value=2.3e-34 Score=287.56 Aligned_cols=340 Identities=19% Similarity=0.226 Sum_probs=243.9
Q ss_pred HHHHhcCCCCCcHHHHHHHHHhhcCCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcHHHHHHHHH
Q 010357 32 QLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYE 111 (512)
Q Consensus 32 ~l~~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~ 111 (512)
+....+|+. |++.|..+...+..|+ +..++||+|||+++++|++-.... +..+.+++||..||.|.++
T Consensus 48 a~~R~lg~~-p~~vQlig~~~l~~G~--Iaem~TGeGKTLva~lpa~l~aL~---------G~~V~VvTpt~~LA~qdae 115 (745)
T TIGR00963 48 ASKRVLGMR-PFDVQLIGGIALHKGK--IAEMKTGEGKTLTATLPAYLNALT---------GKGVHVVTVNDYLAQRDAE 115 (745)
T ss_pred HHHHHhCCC-ccchHHhhhhhhcCCc--eeeecCCCccHHHHHHHHHHHHHh---------CCCEEEEcCCHHHHHHHHH
Confidence 334445876 9999999998888875 999999999999999999644433 5569999999999999999
Q ss_pred HHHHHHhhcCCcceEEEeCCCchHHHHHHHcCCCCEEEeCChHH-HHHHhhcC-----CCcCCceeEEEEcchhHHHhc-
Q 010357 112 ILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRL-LDHLKHTS-----SFLHTNLRWIIFDEADRILEL- 184 (512)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~Iiv~Tp~~l-~~~l~~~~-----~~~~~~~~~lV~DEah~l~~~- 184 (512)
++..+...++ +.++.+.++.+....... ..++|+++||.+| ++++...- ...+..+.++|+||+|+++-.
T Consensus 116 ~~~~l~~~LG-Lsv~~i~g~~~~~~r~~~--y~~dIvyGT~~rlgfDyLrd~~~~~~~~~~~r~l~~aIIDEaDs~LIDe 192 (745)
T TIGR00963 116 WMGQVYRFLG-LSVGLILSGMSPEERREA--YACDITYGTNNELGFDYLRDNMAHSKEEKVQRPFHFAIIDEVDSILIDE 192 (745)
T ss_pred HHHHHhccCC-CeEEEEeCCCCHHHHHHh--cCCCEEEECCCchhhHHHhcccccchhhhhccccceeEeecHHHHhHHh
Confidence 9999998877 666777887775543333 3579999999999 88886532 235678999999999996541
Q ss_pred C---------------chHHHHHHHHHhccC-----------------------------CC------------------
Q 010357 185 G---------------FGKEIEEILDILGSR-----------------------------NI------------------ 202 (512)
Q Consensus 185 ~---------------~~~~~~~i~~~~~~~-----------------------------~~------------------ 202 (512)
. .......+...+... +.
T Consensus 193 aRtpLiisg~~~~~~~ly~~a~~i~r~L~~~~dy~~de~~k~v~Lt~~G~~~~e~~~~~~~ly~~~~~~~~~~i~~Al~A 272 (745)
T TIGR00963 193 ARTPLIISGPAEKSTELYLQANRFAKALEKEVHYEVDEKNRAVLLTEKGIKKAEDLLGVDNLYDLENSPLIHYINNALKA 272 (745)
T ss_pred hhhHHhhcCCCCCchHHHHHHHHHHHhhccCCCeEEecCCCceeECHHHHHHHHHHcCCccccChhhhHHHHHHHHHHHH
Confidence 0 000111111111100 00
Q ss_pred ------------------------CCC--CCCCc--------------cc---------------ccceeEEEEEEecch
Q 010357 203 ------------------------GSI--GEGNE--------------VS---------------NVKRQNLLLSATLNE 227 (512)
Q Consensus 203 ------------------------~~~--~~~~~--------------~~---------------~~~~~~i~~SAT~~~ 227 (512)
+.. +..++ .. ..-.++.+||+|...
T Consensus 273 ~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~ws~GLhQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~t 352 (745)
T TIGR00963 273 KELFEKDVDYIVRDGEVVIVDEFTGRIMEGRRWSDGLHQAIEAKEGVEIQNENQTLATITYQNFFRLYEKLSGMTGTAKT 352 (745)
T ss_pred HHHHhcCCcEEEECCEEEEEECCCCcCCCCCccchHHHHHHHHhcCCCcCCCceeeeeeeHHHHHhhCchhhccCCCcHH
Confidence 000 00000 00 011146677777655
Q ss_pred hhHHHHHhhcCCCeEEccCCCcCCCCccccccCCcccchhhhccCCCccccccccccccccceeeeEEEecCCchHHHHH
Q 010357 228 KVNHLAKISLETPVLIGLDEKKLPEDKSHVRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCGSRLAVLL 307 (512)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~ 307 (512)
....+...+.-+...+.. ..+ ....-....+.....+|+.++.
T Consensus 353 e~~E~~~iY~l~vv~IPt-nkp------------------------------------~~R~d~~d~i~~t~~~k~~ai~ 395 (745)
T TIGR00963 353 EEEEFEKIYNLEVVVVPT-NRP------------------------------------VIRKDLSDLVYKTEEEKWKAVV 395 (745)
T ss_pred HHHHHHHHhCCCEEEeCC-CCC------------------------------------eeeeeCCCeEEcCHHHHHHHHH
Confidence 444454444333322211 110 0011112233344567888888
Q ss_pred HHHHhhhccccCceEEEEeecchhhhhHHHhhhhhcCCCCCCChhHHHhhhhccceeeecCCCCHHHHHHHHHhhhcCCC
Q 010357 308 SILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKK 387 (512)
Q Consensus 308 ~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~l~g~~~~~~r~~~~~~f~~~~~ 387 (512)
+.+.... ..+.++||||+++..++.++..|.+. ++++..+|++ ..+|+..+..|..+..
T Consensus 396 ~~i~~~~--~~grpvLV~t~si~~se~ls~~L~~~-----------------gi~~~~Lna~--q~~rEa~ii~~ag~~g 454 (745)
T TIGR00963 396 DEIKERH--AKGQPVLVGTTSVEKSELLSNLLKER-----------------GIPHNVLNAK--NHEREAEIIAQAGRKG 454 (745)
T ss_pred HHHHHHH--hcCCCEEEEeCcHHHHHHHHHHHHHc-----------------CCCeEEeeCC--hHHHHHHHHHhcCCCc
Confidence 8877663 45789999999999999999999998 8888999999 8899999999999999
Q ss_pred cEEEeecccccCCCCCC-------CcEEEEeCCCCChhHHHHhhhhcccCCCCccEEEecCccc
Q 010357 388 ALLLSTDVAARGLDFPK-------VKCIIQYDSAGEATEYVHRVGRTARLGERGDSLLFLQPVE 444 (512)
Q Consensus 388 ~vLvaT~~~~~Gldip~-------~~~VI~~~~p~s~~~~~Q~~GRagR~g~~g~~~~~~~~~~ 444 (512)
.|+|||+++++|+|++. ..+||+++.|.|...|.|+.||+||.|.+|.+..|++..|
T Consensus 455 ~VtIATnmAgRGtDI~l~~V~~~GGl~VI~t~~p~s~ri~~q~~GRtGRqG~~G~s~~~ls~eD 518 (745)
T TIGR00963 455 AVTIATNMAGRGTDIKLEEVKELGGLYVIGTERHESRRIDNQLRGRSGRQGDPGSSRFFLSLED 518 (745)
T ss_pred eEEEEeccccCCcCCCccchhhcCCcEEEecCCCCcHHHHHHHhccccCCCCCcceEEEEeccH
Confidence 99999999999999987 5599999999999999999999999999999999999876
No 79
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=100.00 E-value=3.1e-34 Score=256.14 Aligned_cols=337 Identities=18% Similarity=0.229 Sum_probs=248.0
Q ss_pred ccCCCCHHHHHHHHHhcCCCCCcHHHHHHHHHhhcCCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEc
Q 010357 21 SSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLV 100 (512)
Q Consensus 21 ~~~~l~~~~~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~ 100 (512)
+++|++.+..+.|++.|..+.+||.|..++...+.++++++..|||.||+++|.+|++-. .+.+|+++
T Consensus 74 d~fpws~e~~~ilk~~f~lekfrplq~~ain~~ma~ed~~lil~tgggkslcyqlpal~a------------dg~alvi~ 141 (695)
T KOG0353|consen 74 DDFPWSDEAKDILKEQFHLEKFRPLQLAAINATMAGEDAFLILPTGGGKSLCYQLPALCA------------DGFALVIC 141 (695)
T ss_pred CCCCCchHHHHHHHHHhhHHhcChhHHHHhhhhhccCceEEEEeCCCccchhhhhhHHhc------------CCceEeec
Confidence 457888999999999999999999999999999999999999999999999999999865 66799999
Q ss_pred CcHHHHHHHHHHHHHHHhhcCCcceEEEeCCCchHHHH---HHH---cCCCCEEEeCChHHHHHHh---h-cCCCcCCce
Q 010357 101 PTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEK---ARL---RKGISILVATPGRLLDHLK---H-TSSFLHTNL 170 (512)
Q Consensus 101 Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~---~~~---~~~~~Iiv~Tp~~l~~~l~---~-~~~~~~~~~ 170 (512)
|..+|.+++.-.++.++-. ...+....+.+... +.+ .+...+++.||+.+...-. + .+.+....+
T Consensus 142 plislmedqil~lkqlgi~-----as~lnansske~~k~v~~~i~nkdse~kliyvtpekiaksk~~mnkleka~~~~~~ 216 (695)
T KOG0353|consen 142 PLISLMEDQILQLKQLGID-----ASMLNANSSKEEAKRVEAAITNKDSEFKLIYVTPEKIAKSKKFMNKLEKALEAGFF 216 (695)
T ss_pred hhHHHHHHHHHHHHHhCcc-----hhhccCcccHHHHHHHHHHHcCCCceeEEEEecHHHHHHHHHHHHHHHHHhhccee
Confidence 9999999999888887432 11222222222111 111 2236799999998854221 1 133455678
Q ss_pred eEEEEcchhHHHhcCc--hHHHHH---HHHHhccCCCCCCCCCCcccccceeEEEEEEecchhhHHHHHhhcCCCeEEcc
Q 010357 171 RWIIFDEADRILELGF--GKEIEE---ILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGL 245 (512)
Q Consensus 171 ~~lV~DEah~l~~~~~--~~~~~~---i~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~ 245 (512)
.++.+||+|+..+|+. ...+.. +-+.++ ...++++|||.++.+..-.+..+.-...+.+
T Consensus 217 ~~iaidevhccsqwghdfr~dy~~l~ilkrqf~----------------~~~iigltatatn~vl~d~k~il~ie~~~tf 280 (695)
T KOG0353|consen 217 KLIAIDEVHCCSQWGHDFRPDYKALGILKRQFK----------------GAPIIGLTATATNHVLDDAKDILCIEAAFTF 280 (695)
T ss_pred EEEeecceeehhhhCcccCcchHHHHHHHHhCC----------------CCceeeeehhhhcchhhHHHHHHhHHhhhee
Confidence 9999999999999873 333222 222232 7789999999887654333321110111111
Q ss_pred CCCcCCCCccccccCCcccchhhhccCCCccccccccccccccceeeeEEEecCCc---hHHHHHHHHHhhhccccCceE
Q 010357 246 DEKKLPEDKSHVRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCGS---RLAVLLSILKHLFDTEVSQKL 322 (512)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---k~~~l~~~l~~~~~~~~~~~~ 322 (512)
.... . ..++. +-+...+.. -...+..+++. ...+...
T Consensus 281 ~a~f-----------------------------------n-r~nl~-yev~qkp~n~dd~~edi~k~i~~---~f~gqsg 320 (695)
T KOG0353|consen 281 RAGF-----------------------------------N-RPNLK-YEVRQKPGNEDDCIEDIAKLIKG---DFAGQSG 320 (695)
T ss_pred eccc-----------------------------------C-CCCce-eEeeeCCCChHHHHHHHHHHhcc---ccCCCcc
Confidence 1110 0 00111 111112222 23333444433 3456789
Q ss_pred EEEeecchhhhhHHHhhhhhcCCCCCCChhHHHhhhhccceeeecCCCCHHHHHHHHHhhhcCCCcEEEeecccccCCCC
Q 010357 323 VVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDF 402 (512)
Q Consensus 323 lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~l~g~~~~~~r~~~~~~f~~~~~~vLvaT~~~~~Gldi 402 (512)
||||-+++.++.++..|+.. |+....+|..|.+.+|..+.+.+..|+++|+|||-++++|+|-
T Consensus 321 iiyc~sq~d~ekva~alkn~-----------------gi~a~~yha~lep~dks~~hq~w~a~eiqvivatvafgmgidk 383 (695)
T KOG0353|consen 321 IIYCFSQKDCEKVAKALKNH-----------------GIHAGAYHANLEPEDKSGAHQGWIAGEIQVIVATVAFGMGIDK 383 (695)
T ss_pred eEEEeccccHHHHHHHHHhc-----------------CccccccccccCccccccccccccccceEEEEEEeeecccCCC
Confidence 99999999999999999998 8889999999999999999999999999999999999999999
Q ss_pred CCCcEEEEeCCCCChhHHHH-------------------------------------------hhhhcccCCCCccEEEe
Q 010357 403 PKVKCIIQYDSAGEATEYVH-------------------------------------------RVGRTARLGERGDSLLF 439 (512)
Q Consensus 403 p~~~~VI~~~~p~s~~~~~Q-------------------------------------------~~GRagR~g~~g~~~~~ 439 (512)
|++++||+.+.|.|.+.|.| ..|||||.+++..|+++
T Consensus 384 pdvrfvihhsl~ksienyyqasarillrmtkqknksdtggstqinilevctnfkiffavfsekesgragrd~~~a~cily 463 (695)
T KOG0353|consen 384 PDVRFVIHHSLPKSIENYYQASARILLRMTKQKNKSDTGGSTQINILEVCTNFKIFFAVFSEKESGRAGRDDMKADCILY 463 (695)
T ss_pred CCeeEEEecccchhHHHHHHHHHHHHHHHhhhcccccCCCcceeehhhhhccceeeeeeecchhccccccCCCcccEEEE
Confidence 99999999999999999999 78999999999999999
Q ss_pred cCccchhH
Q 010357 440 LQPVEMDY 447 (512)
Q Consensus 440 ~~~~~~~~ 447 (512)
|.-.|.-.
T Consensus 464 y~~~difk 471 (695)
T KOG0353|consen 464 YGFADIFK 471 (695)
T ss_pred echHHHHh
Confidence 98877443
No 80
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=100.00 E-value=1e-33 Score=285.74 Aligned_cols=401 Identities=18% Similarity=0.213 Sum_probs=280.8
Q ss_pred CCCCHHHHHHHHHhcCCCCCcHHHHHHHHHhhcC-CCEEEEccCCChHhHHHHHHHHHHHhhcCCCC--CCCCCceEEEE
Q 010357 23 LGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSG-RHVLVNAATGTGKTVAYLAPIINHLQSYSPRI--DRSSGTFALVL 99 (512)
Q Consensus 23 ~~l~~~~~~~l~~~~~~~~~~~~Q~~~~~~~~~~-~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~--~~~~~~~~lil 99 (512)
..++.|-..++ +|...+.++|....+.++.+ .|+++|||||+|||.++++-+++.+....... -.....+++++
T Consensus 294 selP~Wnq~aF---~g~~sLNrIQS~v~daAl~~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~dgs~nl~~fKIVYI 370 (1674)
T KOG0951|consen 294 SELPKWNQPAF---FGKQSLNRIQSKVYDAALRGDENMLLCAPTGAGKTNVAVLTILQELGNHLREDGSVNLAPFKIVYI 370 (1674)
T ss_pred cCCcchhhhhc---ccchhhhHHHHHHHHHHhcCcCcEEEeccCCCCchHHHHHHHHHHHhcccccccceecccceEEEE
Confidence 35666777777 26778999999999988755 68999999999999999999999998765422 11335689999
Q ss_pred cCcHHHHHHHHHHHHHHHhhcCCcceEEEeCCCc-hHHHHHHHcCCCCEEEeCChHHHHHHhhcCCC-cCCceeEEEEcc
Q 010357 100 VPTRELCLQVYEILHKLLHRFHWIVPGYVMGGEN-RSKEKARLRKGISILVATPGRLLDHLKHTSSF-LHTNLRWIIFDE 177 (512)
Q Consensus 100 ~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~-~~~~~~~lV~DE 177 (512)
+|.++|++.|...|.+.+..+|..+ .-.+|... ...+. ...+|+|+|||..--.-.+.... ..+-++++|+||
T Consensus 371 APmKaLvqE~VgsfSkRla~~GI~V-~ElTgD~~l~~~qi----eeTqVIV~TPEK~DiITRk~gdraY~qlvrLlIIDE 445 (1674)
T KOG0951|consen 371 APMKALVQEMVGSFSKRLAPLGITV-LELTGDSQLGKEQI----EETQVIVTTPEKWDIITRKSGDRAYEQLVRLLIIDE 445 (1674)
T ss_pred eeHHHHHHHHHHHHHhhccccCcEE-EEecccccchhhhh----hcceeEEeccchhhhhhcccCchhHHHHHHHHhhhh
Confidence 9999999999999999888887433 33433322 22222 23589999999985544432222 123578999999
Q ss_pred hhHHHhcCchHHHHHHHHHhccCCCCCCCCCCcccccceeEEEEEEecchhhHHHHHhhcCCCeEEccCCCcCCCCcccc
Q 010357 178 ADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLPEDKSHV 257 (512)
Q Consensus 178 ah~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (512)
.|. +...+++.++.+..+...+.. ......+++++|||+|+-.+...-+....+.++..+....
T Consensus 446 IHL-LhDdRGpvLESIVaRt~r~se--------s~~e~~RlVGLSATLPNy~DV~~Fl~v~~~glf~fd~syR------- 509 (1674)
T KOG0951|consen 446 IHL-LHDDRGPVLESIVARTFRRSE--------STEEGSRLVGLSATLPNYEDVASFLRVDPEGLFYFDSSYR------- 509 (1674)
T ss_pred hhh-cccccchHHHHHHHHHHHHhh--------hcccCceeeeecccCCchhhhHHHhccCcccccccCcccC-------
Confidence 994 555699999888877655321 1122789999999999754433322233344444433332
Q ss_pred ccCCcccchhhhccCCCccccccccccccccceeeeEEEecCCchH---HHHHHHHH-hhhccccCceEEEEeecchhhh
Q 010357 258 RFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCGSRL---AVLLSILK-HLFDTEVSQKLVVFFSTCDAVD 333 (512)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~---~~l~~~l~-~~~~~~~~~~~lvf~~~~~~~~ 333 (512)
|..+.+.++.+...... .++.+.+. +.++....+++|||+.+++++-
T Consensus 510 -----------------------------pvPL~qq~Igi~ek~~~~~~qamNe~~yeKVm~~agk~qVLVFVHsRkET~ 560 (1674)
T KOG0951|consen 510 -----------------------------PVPLKQQYIGITEKKPLKRFQAMNEACYEKVLEHAGKNQVLVFVHSRKETA 560 (1674)
T ss_pred -----------------------------cCCccceEeccccCCchHHHHHHHHHHHHHHHHhCCCCcEEEEEEechHHH
Confidence 23344555554433322 22222222 2223344589999999999999
Q ss_pred hHHHhhhhhcCC----------CC-----------CCChhHHHhhhhccceeeecCCCCHHHHHHHHHhhhcCCCcEEEe
Q 010357 334 FHYSLLSEFQWS----------PH-----------SQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLS 392 (512)
Q Consensus 334 ~l~~~l~~~~~~----------~~-----------~~~~~~~~~~~~~~~v~~l~g~~~~~~r~~~~~~f~~~~~~vLva 392 (512)
..++.++..... .. ......+.. ++.+++.++|++|++.+|..+++.|+.|.++|+|+
T Consensus 561 ktA~aIRd~~le~dtls~fmre~s~s~eilrtea~~~kn~dLkd-LLpygfaIHhAGl~R~dR~~~EdLf~~g~iqvlvs 639 (1674)
T KOG0951|consen 561 KTARAIRDKALEEDTLSRFMREDSASREILRTEAGQAKNPDLKD-LLPYGFAIHHAGLNRKDRELVEDLFADGHIQVLVS 639 (1674)
T ss_pred HHHHHHHHHHhhhhHHHHHHhcccchhhhhhhhhhcccChhHHH-HhhccceeeccCCCcchHHHHHHHHhcCceeEEEe
Confidence 999888742111 11 111222233 45789999999999999999999999999999999
Q ss_pred ecccccCCCCCCCcEEEE----eC------CCCChhHHHHhhhhcccCCC--CccEEEecCccchhHHHHHHHcCCCCCc
Q 010357 393 TDVAARGLDFPKVKCIIQ----YD------SAGEATEYVHRVGRTARLGE--RGDSLLFLQPVEMDYLQDLEKHGVSLTE 460 (512)
Q Consensus 393 T~~~~~Gldip~~~~VI~----~~------~p~s~~~~~Q~~GRagR~g~--~g~~~~~~~~~~~~~~~~l~~~~~~~~~ 460 (512)
|.++++|+|+|+-+++|- |+ .+.++.+.+||.|||||.+- .|..++.-...+..+...+.+..+++++
T Consensus 640 tatlawgvnlpahtViikgtqvy~pekg~w~elsp~dv~qmlgragrp~~D~~gegiiit~~se~qyyls~mn~qLpies 719 (1674)
T KOG0951|consen 640 TATLAWGVNLPAHTVIIKGTQVYDPEKGRWTELSPLDVMQMLGRAGRPQYDTCGEGIIITDHSELQYYLSLMNQQLPIES 719 (1674)
T ss_pred ehhhhhhcCCCcceEEecCccccCcccCccccCCHHHHHHHHhhcCCCccCcCCceeeccCchHhhhhHHhhhhcCCChH
Confidence 999999999997666662 33 34589999999999999764 4677777777888888888888888877
Q ss_pred cChhhHhhhccccCCCC
Q 010357 461 YPLLKVLDSFPLYGQKP 477 (512)
Q Consensus 461 ~~~~~~l~~~~~~~~~~ 477 (512)
--+.++.+.+.++...+
T Consensus 720 q~~~rl~d~lnaeiv~G 736 (1674)
T KOG0951|consen 720 QFVSRLADCLNAEIVLG 736 (1674)
T ss_pred HHHHHhhhhhhhhhhcc
Confidence 76777777777666654
No 81
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=100.00 E-value=7.4e-32 Score=284.78 Aligned_cols=369 Identities=18% Similarity=0.238 Sum_probs=234.8
Q ss_pred cHHHHHHHHHhhcCCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCc----HHHHHHHHHHHHHHHh
Q 010357 43 TKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPT----RELCLQVYEILHKLLH 118 (512)
Q Consensus 43 ~~~Q~~~~~~~~~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt----~~L~~q~~~~~~~~~~ 118 (512)
+.+..+.+..+.+++.++++|+||||||...-..+++. .. +....+++.-|. ++||.++++++....
T Consensus 76 ~~~r~~Il~ai~~~~VviI~GeTGSGKTTqlPq~lle~-g~-------g~~g~I~~TQPRRlAArsLA~RVA~El~~~l- 146 (1294)
T PRK11131 76 SQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICLEL-GR-------GVKGLIGHTQPRRLAARTVANRIAEELETEL- 146 (1294)
T ss_pred HHHHHHHHHHHHhCCeEEEECCCCCCHHHHHHHHHHHc-CC-------CCCCceeeCCCcHHHHHHHHHHHHHHHhhhh-
Confidence 33444566666677778899999999998532222221 11 112345555574 566676666665421
Q ss_pred hcCCcceEEEeCCCchHHHHHHHcCCCCEEEeCChHHHHHHhhcCCCcCCceeEEEEcchh-HHHhcCchHHHHHHHHHh
Q 010357 119 RFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEAD-RILELGFGKEIEEILDIL 197 (512)
Q Consensus 119 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lV~DEah-~l~~~~~~~~~~~i~~~~ 197 (512)
+ ..+++-....+ ......+|+|+||++|++.+.... .++++++||+|||| ++++.+|... .+...+
T Consensus 147 --G-~~VGY~vrf~~------~~s~~t~I~v~TpG~LL~~l~~d~--~Ls~~~~IIIDEAHERsLn~DfLLg--~Lk~lL 213 (1294)
T PRK11131 147 --G-GCVGYKVRFND------QVSDNTMVKLMTDGILLAEIQQDR--LLMQYDTIIIDEAHERSLNIDFILG--YLKELL 213 (1294)
T ss_pred --c-ceeceeecCcc------ccCCCCCEEEEChHHHHHHHhcCC--ccccCcEEEecCccccccccchHHH--HHHHhh
Confidence 2 12232221111 123467999999999999887643 36799999999999 4666555432 222222
Q ss_pred ccCCCCCCCCCCcccccceeEEEEEEecchhhHHHHHhhcCCCeEEccCCCcCCCCccccccCCcccchhhhccCCCccc
Q 010357 198 GSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLPEDKSHVRFGSLESDVKEEVEHPSTTM 277 (512)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (512)
+.. ++.|+|++|||++. ..+.+.+.+.+. +.+.....+
T Consensus 214 ~~r-------------pdlKvILmSATid~--e~fs~~F~~apv-I~V~Gr~~p-------------------------- 251 (1294)
T PRK11131 214 PRR-------------PDLKVIITSATIDP--ERFSRHFNNAPI-IEVSGRTYP-------------------------- 251 (1294)
T ss_pred hcC-------------CCceEEEeeCCCCH--HHHHHHcCCCCE-EEEcCcccc--------------------------
Confidence 221 16799999999964 356655554443 333322111
Q ss_pred cccccccccccceeeeEEEec------CCchHHHHHHHHHhhhccccCceEEEEeecchhhhhHHHhhhhhcCCCCCCCh
Q 010357 278 RSTTEDFKLPAQLVQRYVKVP------CGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPD 351 (512)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~------~~~k~~~l~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~ 351 (512)
+...+.... ..+.+..+...+..+. ....+.+|||+++..+++.+++.|......
T Consensus 252 ------------Vei~y~p~~~~~~~~~~d~l~~ll~~V~~l~-~~~~GdILVFLpg~~EIe~lae~L~~~~~~------ 312 (1294)
T PRK11131 252 ------------VEVRYRPIVEEADDTERDQLQAIFDAVDELG-REGPGDILIFMSGEREIRDTADALNKLNLR------ 312 (1294)
T ss_pred ------------ceEEEeecccccchhhHHHHHHHHHHHHHHh-cCCCCCEEEEcCCHHHHHHHHHHHHhcCCC------
Confidence 011111111 1123344444444333 344689999999999999999999876321
Q ss_pred hHHHhhhhccceeeecCCCCHHHHHHHHHhhhcCCCcEEEeecccccCCCCCCCcEEEEeCC------------------
Q 010357 352 MELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDS------------------ 413 (512)
Q Consensus 352 ~~~~~~~~~~~v~~l~g~~~~~~r~~~~~~f~~~~~~vLvaT~~~~~Gldip~~~~VI~~~~------------------ 413 (512)
...+..+||+|+..+|..+++. .|..+|||||+++++|+|+|++++||+++.
T Consensus 313 --------~~~VlpLhg~Ls~~eQ~~Vf~~--~g~rkIIVATNIAEtSITIpgI~yVID~Gl~k~~~Yd~~~~~~~Lp~~ 382 (1294)
T PRK11131 313 --------HTEILPLYARLSNSEQNRVFQS--HSGRRIVLATNVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIE 382 (1294)
T ss_pred --------cceEeecccCCCHHHHHHHhcc--cCCeeEEEeccHHhhccccCcceEEEECCCccccccccccCcccCCee
Confidence 3457889999999999999986 477899999999999999999999999862
Q ss_pred CCChhHHHHhhhhcccCCCCccEEEecCccchhHHHHHHHcCCCCCccChhhHhhhccccCCCCccccccCccchhhHHH
Q 010357 414 AGEATEYVHRVGRTARLGERGDSLLFLQPVEMDYLQDLEKHGVSLTEYPLLKVLDSFPLYGQKPRVKKFLTTESHPWILS 493 (512)
Q Consensus 414 p~s~~~~~Q~~GRagR~g~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 493 (512)
|.|..+|.||+|||||. ++|.||.+|++.+...+. ....-++...++..++-.+...+..+ ....+.--.|....
T Consensus 383 ~iSkasa~QRaGRAGR~-~~G~c~rLyte~d~~~~~--~~~~PEIlR~~L~~viL~lk~lgl~d--i~~F~fldpP~~~~ 457 (1294)
T PRK11131 383 PISQASANQRKGRCGRV-SEGICIRLYSEDDFLSRP--EFTDPEILRTNLASVILQMTALGLGD--IAAFPFVEAPDKRN 457 (1294)
T ss_pred ecCHhhHhhhccccCCC-CCcEEEEeCCHHHHHhhh--cccCCccccCCHHHHHHHHHHcCCCC--cceeeCCCCCCHHH
Confidence 34668999999999999 789999999987654332 11233444555555444333222211 12233344466888
Q ss_pred HHHHHHHHHHhccccc
Q 010357 494 LQNALESFIIHEILSC 509 (512)
Q Consensus 494 ~~~~~e~~~~~~~~~~ 509 (512)
+...++.+..-+-++.
T Consensus 458 i~~al~~L~~LgAld~ 473 (1294)
T PRK11131 458 IQDGVRLLEELGAITT 473 (1294)
T ss_pred HHHHHHHHHHCCCCCc
Confidence 9999998888776653
No 82
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=100.00 E-value=3.2e-33 Score=274.70 Aligned_cols=326 Identities=23% Similarity=0.299 Sum_probs=208.4
Q ss_pred CCcHHHHHHHHHhhc----CCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHH
Q 010357 41 APTKVQAQAIPVILS----GRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKL 116 (512)
Q Consensus 41 ~~~~~Q~~~~~~~~~----~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 116 (512)
.||+||++|+..+.. ++..++++|||+|||++++..+... ...+|||+|+++|+.||++.+...
T Consensus 36 ~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~~~------------~~~~Lvlv~~~~L~~Qw~~~~~~~ 103 (442)
T COG1061 36 ELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIAEL------------KRSTLVLVPTKELLDQWAEALKKF 103 (442)
T ss_pred CCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHHHh------------cCCEEEEECcHHHHHHHHHHHHHh
Confidence 499999999999987 8899999999999999998888776 333999999999999999877776
Q ss_pred HhhcCCcceEEEeCCCchHHHHHHHcCCCCEEEeCChHHHHHHhhcCCCcCCceeEEEEcchhHHHhcCchHHHHHHHHH
Q 010357 117 LHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDI 196 (512)
Q Consensus 117 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lV~DEah~l~~~~~~~~~~~i~~~ 196 (512)
.... ..++...++..... . ..|.|+|.+.+.... ....+....+++||||||||+... ....+...
T Consensus 104 ~~~~--~~~g~~~~~~~~~~------~-~~i~vat~qtl~~~~-~l~~~~~~~~~liI~DE~Hh~~a~----~~~~~~~~ 169 (442)
T COG1061 104 LLLN--DEIGIYGGGEKELE------P-AKVTVATVQTLARRQ-LLDEFLGNEFGLIIFDEVHHLPAP----SYRRILEL 169 (442)
T ss_pred cCCc--cccceecCceeccC------C-CcEEEEEhHHHhhhh-hhhhhcccccCEEEEEccccCCcH----HHHHHHHh
Confidence 5421 12333333322111 0 369999999997742 112233336899999999997543 23344444
Q ss_pred hccCCCCCCCCCCccccccee-EEEEEEecchhh-HHHHHhhc-CCCeEEccCCCcCCC--CccccccCCcccchhhhcc
Q 010357 197 LGSRNIGSIGEGNEVSNVKRQ-NLLLSATLNEKV-NHLAKISL-ETPVLIGLDEKKLPE--DKSHVRFGSLESDVKEEVE 271 (512)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~-~i~~SAT~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 271 (512)
+. ... ++++|||+...- ......+. ..+..+......... ...++.+............
T Consensus 170 ~~----------------~~~~~LGLTATp~R~D~~~~~~l~~~~g~~vy~~~~~~li~~g~Lap~~~~~i~~~~t~~~~ 233 (442)
T COG1061 170 LS----------------AAYPRLGLTATPEREDGGRIGDLFDLIGPIVYEVSLKELIDEGYLAPYKYVEIKVTLTEDEE 233 (442)
T ss_pred hh----------------cccceeeeccCceeecCCchhHHHHhcCCeEeecCHHHHHhCCCccceEEEEEEeccchHHH
Confidence 43 333 899999986322 11111111 113333332221111 0011111000000000000
Q ss_pred CCCcccccccccc-----ccccceeeeEEEecCCchHHHHHHHHHhhhccccCceEEEEeecchhhhhHHHhhhhhcCCC
Q 010357 272 HPSTTMRSTTEDF-----KLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSP 346 (512)
Q Consensus 272 ~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~ 346 (512)
..+.......... ...............+.+...+...+.... .+.+++||+.+..++..++..+...
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~lif~~~~~~a~~i~~~~~~~---- 306 (442)
T COG1061 234 REYAKESARFRELLRARGTLRAENEARRIAIASERKIAAVRGLLLKHA---RGDKTLIFASDVEHAYEIAKLFLAP---- 306 (442)
T ss_pred HHhhhhhhhhhhhhhhhhhhhHHHHHHHHhhccHHHHHHHHHHHHHhc---CCCcEEEEeccHHHHHHHHHHhcCC----
Confidence 0000000000000 000000001111222344445555554431 4679999999999999999999775
Q ss_pred CCCChhHHHhhhhccceeeecCCCCHHHHHHHHHhhhcCCCcEEEeecccccCCCCCCCcEEEEeCCCCChhHHHHhhhh
Q 010357 347 HSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRVGR 426 (512)
Q Consensus 347 ~~~~~~~~~~~~~~~~v~~l~g~~~~~~r~~~~~~f~~~~~~vLvaT~~~~~Gldip~~~~VI~~~~p~s~~~~~Q~~GR 426 (512)
+. +..+.|+.+..+|..+++.|+.|..++||++.++.+|+|+|+++++|...++.|...|+||+||
T Consensus 307 -------------~~-~~~it~~t~~~eR~~il~~fr~g~~~~lv~~~vl~EGvDiP~~~~~i~~~~t~S~~~~~Q~lGR 372 (442)
T COG1061 307 -------------GI-VEAITGETPKEEREAILERFRTGGIKVLVTVKVLDEGVDIPDADVLIILRPTGSRRLFIQRLGR 372 (442)
T ss_pred -------------Cc-eEEEECCCCHHHHHHHHHHHHcCCCCEEEEeeeccceecCCCCcEEEEeCCCCcHHHHHHHhhh
Confidence 44 7788999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccc
Q 010357 427 TAR 429 (512)
Q Consensus 427 agR 429 (512)
..|
T Consensus 373 ~LR 375 (442)
T COG1061 373 GLR 375 (442)
T ss_pred hcc
Confidence 999
No 83
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=100.00 E-value=2.2e-32 Score=285.09 Aligned_cols=375 Identities=18% Similarity=0.188 Sum_probs=227.0
Q ss_pred CCcHHHHHHHHHhhcC--CCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHHh
Q 010357 41 APTKVQAQAIPVILSG--RHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLH 118 (512)
Q Consensus 41 ~~~~~Q~~~~~~~~~~--~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~ 118 (512)
.|.|||..++..++.. ..+++..++|.|||+.+.+.+.+.+.. +...++||+||. .|..||..++...+.
T Consensus 152 ~l~pHQl~~~~~vl~~~~~R~LLADEvGLGKTIeAglil~~l~~~-------g~~~rvLIVvP~-sL~~QW~~El~~kF~ 223 (956)
T PRK04914 152 SLIPHQLYIAHEVGRRHAPRVLLADEVGLGKTIEAGMIIHQQLLT-------GRAERVLILVPE-TLQHQWLVEMLRRFN 223 (956)
T ss_pred CCCHHHHHHHHHHhhccCCCEEEEeCCcCcHHHHHHHHHHHHHHc-------CCCCcEEEEcCH-HHHHHHHHHHHHHhC
Confidence 4999999999877643 478999999999999998888777655 335679999998 899999999876543
Q ss_pred hcCCcceEEEeCCCchHHHHH---HHcCCCCEEEeCChHHHHHHhhcCCCcCCceeEEEEcchhHHHhcC-chHHHHHHH
Q 010357 119 RFHWIVPGYVMGGENRSKEKA---RLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELG-FGKEIEEIL 194 (512)
Q Consensus 119 ~~~~~~~~~~~~g~~~~~~~~---~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lV~DEah~l~~~~-~~~~~~~i~ 194 (512)
.... +.++........ ......+++|+|.+.+...-.....+.-..+++||+||||++.... ........+
T Consensus 224 ----l~~~-i~~~~~~~~~~~~~~~pf~~~~~vI~S~~~l~~~~~~~~~l~~~~wdlvIvDEAH~lk~~~~~~s~~y~~v 298 (956)
T PRK04914 224 ----LRFS-LFDEERYAEAQHDADNPFETEQLVICSLDFLRRNKQRLEQALAAEWDLLVVDEAHHLVWSEEAPSREYQVV 298 (956)
T ss_pred ----CCeE-EEcCcchhhhcccccCccccCcEEEEEHHHhhhCHHHHHHHhhcCCCEEEEechhhhccCCCCcCHHHHHH
Confidence 1122 222222111110 1112458999999988652111111222378999999999986321 111112233
Q ss_pred HHhccCCCCCCCCCCcccccceeEEEEEEecch-h-hHHHHHhhcCCCeEEccCC----------------------CcC
Q 010357 195 DILGSRNIGSIGEGNEVSNVKRQNLLLSATLNE-K-VNHLAKISLETPVLIGLDE----------------------KKL 250 (512)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~-~-~~~~~~~~~~~~~~~~~~~----------------------~~~ 250 (512)
..+... ...++++||||-. . .+.+....+-.|..+.-.. ..+
T Consensus 299 ~~La~~--------------~~~~LLLTATP~q~~~~e~falL~lLdP~~f~~~~~F~~e~~~~~~~a~~v~~l~~~~~~ 364 (956)
T PRK04914 299 EQLAEV--------------IPGVLLLTATPEQLGQESHFARLRLLDPDRFHDYEAFVEEQQQYRPVADAVQALLAGEKL 364 (956)
T ss_pred HHHhhc--------------cCCEEEEEcCcccCCcHHHHHhhhhhCCCcCCCHHHHHHHHHhhHHHHHHHHHHhcCCcC
Confidence 333211 4578999999953 1 1122222222222111000 000
Q ss_pred CC--------CccccccCCc----ccc----------hhhhcc--C---CCccccccccccccccceeeeE---------
Q 010357 251 PE--------DKSHVRFGSL----ESD----------VKEEVE--H---PSTTMRSTTEDFKLPAQLVQRY--------- 294 (512)
Q Consensus 251 ~~--------~~~~~~~~~~----~~~----------~~~~~~--~---~~~~~~~~~~~~~~~~~~~~~~--------- 294 (512)
.. .........+ ... ...... + ..-...........+....+.+
T Consensus 365 ~~~~~~~l~~ll~~~~~~~l~~~~~~~~~~~~~~~~~~i~~L~d~hg~~rvm~RntR~~v~~fp~R~~~~~~l~~~~~y~ 444 (956)
T PRK04914 365 SDDALNALGELLGEQDIEPLLQAANSDSEEAQAARQELISELLDRHGTGRVLFRNTRAAVKGFPKRELHPIPLPLPEQYQ 444 (956)
T ss_pred CHHHHHHHHHHhcccchhHHHhhhcccccccHHHHHHHHHHHHhhcCcceEEEeccHHhhcCCCcCceeEeecCCCHHHH
Confidence 00 0000000000 000 000000 0 0000000000000000000000
Q ss_pred ----------------------------EEecCCchHHHHHHHHHhhhccccCceEEEEeecchhhhhHHHhhh-hhcCC
Q 010357 295 ----------------------------VKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLS-EFQWS 345 (512)
Q Consensus 295 ----------------------------~~~~~~~k~~~l~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~-~~~~~ 345 (512)
.......|...+.++++. ..+.++||||+++..+..+.+.|+ ..
T Consensus 445 ~~~~~~~~~~~~~~l~pe~~~~~~~~~~~~~~~d~Ki~~L~~~L~~----~~~~KvLVF~~~~~t~~~L~~~L~~~~--- 517 (956)
T PRK04914 445 TAIKVSLEARARDMLYPEQIYQEFEDNATWWNFDPRVEWLIDFLKS----HRSEKVLVICAKAATALQLEQALRERE--- 517 (956)
T ss_pred HHHHHhHHHHHHhhcCHHHHHHHHhhhhhccccCHHHHHHHHHHHh----cCCCeEEEEeCcHHHHHHHHHHHhhcc---
Confidence 011123455556665554 346899999999999999999995 44
Q ss_pred CCCCChhHHHhhhhccceeeecCCCCHHHHHHHHHhhhcC--CCcEEEeecccccCCCCCCCcEEEEeCCCCChhHHHHh
Q 010357 346 PHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTE--KKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHR 423 (512)
Q Consensus 346 ~~~~~~~~~~~~~~~~~v~~l~g~~~~~~r~~~~~~f~~~--~~~vLvaT~~~~~Gldip~~~~VI~~~~p~s~~~~~Q~ 423 (512)
|+++..+||+|+..+|.++++.|+++ ..+|||||+++++|+|++.+++||+||.|+++..|.||
T Consensus 518 --------------Gi~~~~ihG~~s~~eR~~~~~~F~~~~~~~~VLIsTdvgseGlNlq~a~~VInfDlP~nP~~~eQR 583 (956)
T PRK04914 518 --------------GIRAAVFHEGMSIIERDRAAAYFADEEDGAQVLLCSEIGSEGRNFQFASHLVLFDLPFNPDLLEQR 583 (956)
T ss_pred --------------CeeEEEEECCCCHHHHHHHHHHHhcCCCCccEEEechhhccCCCcccccEEEEecCCCCHHHHHHH
Confidence 78899999999999999999999984 58999999999999999999999999999999999999
Q ss_pred hhhcccCCCCccEEEecCc---cchhHHHHHHHcCCCCCccCh
Q 010357 424 VGRTARLGERGDSLLFLQP---VEMDYLQDLEKHGVSLTEYPL 463 (512)
Q Consensus 424 ~GRagR~g~~g~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~ 463 (512)
+||++|.|+.+.+.+++.. ...+.+..+...++++.+..+
T Consensus 584 IGR~~RiGQ~~~V~i~~~~~~~t~~e~i~~~~~~~l~ife~~~ 626 (956)
T PRK04914 584 IGRLDRIGQKHDIQIHVPYLEGTAQERLFRWYHEGLNAFEHTC 626 (956)
T ss_pred hcccccCCCCceEEEEEccCCCCHHHHHHHHHhhhcCceeccC
Confidence 9999999999877655432 235666666666666655543
No 84
>PRK05580 primosome assembly protein PriA; Validated
Probab=100.00 E-value=2.3e-31 Score=274.23 Aligned_cols=338 Identities=20% Similarity=0.208 Sum_probs=219.6
Q ss_pred CCcHHHHHHHHHhhcC---CCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHH
Q 010357 41 APTKVQAQAIPVILSG---RHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLL 117 (512)
Q Consensus 41 ~~~~~Q~~~~~~~~~~---~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 117 (512)
.+++.|+++++.+.++ +++++.++||||||.+|+.++...+.. +.++|+++|+++|+.|+.+.+++.+
T Consensus 144 ~Lt~~Q~~ai~~i~~~~~~~~~Ll~~~TGSGKT~v~l~~i~~~l~~---------g~~vLvLvPt~~L~~Q~~~~l~~~f 214 (679)
T PRK05580 144 TLNPEQAAAVEAIRAAAGFSPFLLDGVTGSGKTEVYLQAIAEVLAQ---------GKQALVLVPEIALTPQMLARFRARF 214 (679)
T ss_pred CCCHHHHHHHHHHHhccCCCcEEEECCCCChHHHHHHHHHHHHHHc---------CCeEEEEeCcHHHHHHHHHHHHHHh
Confidence 4999999999999874 789999999999999999988887755 6789999999999999999998764
Q ss_pred hhcCCcceEEEeCCCchHHHHH---H-HcCCCCEEEeCChHHHHHHhhcCCCcCCceeEEEEcchhHHHhcCc---hHHH
Q 010357 118 HRFHWIVPGYVMGGENRSKEKA---R-LRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGF---GKEI 190 (512)
Q Consensus 118 ~~~~~~~~~~~~~g~~~~~~~~---~-~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lV~DEah~l~~~~~---~~~~ 190 (512)
+ ..+..+.++.+...... . ..+..+|+|+|++.++ ..+.++++||+||+|....... ....
T Consensus 215 ---g-~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~--------~p~~~l~liVvDEeh~~s~~~~~~p~y~~ 282 (679)
T PRK05580 215 ---G-APVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSALF--------LPFKNLGLIIVDEEHDSSYKQQEGPRYHA 282 (679)
T ss_pred ---C-CCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhc--------ccccCCCEEEEECCCccccccCcCCCCcH
Confidence 2 34556666665543322 2 3345899999998764 2345889999999997543321 1112
Q ss_pred HHHHHHhccCCCCCCCCCCcccccceeEEEEEEecchhhHHHHHhhcCCCeEEccCCCcCCCCccccccCCcccchhhhc
Q 010357 191 EEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLPEDKSHVRFGSLESDVKEEV 270 (512)
Q Consensus 191 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (512)
..+....... ...+++++|||++........ -+....+...........+.+...+...
T Consensus 283 r~va~~ra~~-------------~~~~~il~SATps~~s~~~~~--~g~~~~~~l~~r~~~~~~p~v~~id~~~------ 341 (679)
T PRK05580 283 RDLAVVRAKL-------------ENIPVVLGSATPSLESLANAQ--QGRYRLLRLTKRAGGARLPEVEIIDMRE------ 341 (679)
T ss_pred HHHHHHHhhc-------------cCCCEEEEcCCCCHHHHHHHh--ccceeEEEeccccccCCCCeEEEEechh------
Confidence 2221111110 178999999998754333222 1222233232221111111111100000
Q ss_pred cCCCccccccccccccccceeeeEEEecCCchHHHHHHHHHhhhccccCceEEEEeecchhhhhHHHhhhhhcC------
Q 010357 271 EHPSTTMRSTTEDFKLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQW------ 344 (512)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~------ 344 (512)
.........-...+.+.+.+.+ ..+.++|+|+|++..+..+...-.....
T Consensus 342 ----------------------~~~~~~~~~ls~~l~~~i~~~l--~~g~qvll~~nrrGy~~~~~C~~Cg~~~~C~~C~ 397 (679)
T PRK05580 342 ----------------------LLRGENGSFLSPPLLEAIKQRL--ERGEQVLLFLNRRGYAPFLLCRDCGWVAECPHCD 397 (679)
T ss_pred ----------------------hhhhcccCCCCHHHHHHHHHHH--HcCCeEEEEEcCCCCCCceEhhhCcCccCCCCCC
Confidence 0000000001134555555543 3457999999987655433222211100
Q ss_pred ----------------------------CCC-----------CCChhHHHhhhhccceeeecCCCCH--HHHHHHHHhhh
Q 010357 345 ----------------------------SPH-----------SQPDMELKQLFLRCKTFRLHGNMKQ--EDRRTTFGAFK 383 (512)
Q Consensus 345 ----------------------------~~~-----------~~~~~~~~~~~~~~~v~~l~g~~~~--~~r~~~~~~f~ 383 (512)
.|+ +..++.+...+|+.++..+|+++.. .+++.+++.|+
T Consensus 398 ~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~Cg~~~l~~~g~G~e~~~e~l~~~fp~~~v~~~~~d~~~~~~~~~~~l~~f~ 477 (679)
T PRK05580 398 ASLTLHRFQRRLRCHHCGYQEPIPKACPECGSTDLVPVGPGTERLEEELAELFPEARILRIDRDTTRRKGALEQLLAQFA 477 (679)
T ss_pred CceeEECCCCeEECCCCcCCCCCCCCCCCCcCCeeEEeeccHHHHHHHHHHhCCCCcEEEEeccccccchhHHHHHHHHh
Confidence 010 1125566777899999999999874 57899999999
Q ss_pred cCCCcEEEeecccccCCCCCCCcEEEEeCCC--CC----------hhHHHHhhhhcccCCCCccEEEecCccc
Q 010357 384 TEKKALLLSTDVAARGLDFPKVKCIIQYDSA--GE----------ATEYVHRVGRTARLGERGDSLLFLQPVE 444 (512)
Q Consensus 384 ~~~~~vLvaT~~~~~Gldip~~~~VI~~~~p--~s----------~~~~~Q~~GRagR~g~~g~~~~~~~~~~ 444 (512)
+|+.+|||+|+++++|+|+|++++|+.++.. -+ ...|.|++||+||.++.|.+++.....+
T Consensus 478 ~g~~~ILVgT~~iakG~d~p~v~lV~il~aD~~l~~pdfra~Er~~~~l~q~~GRagR~~~~g~viiqT~~p~ 550 (679)
T PRK05580 478 RGEADILIGTQMLAKGHDFPNVTLVGVLDADLGLFSPDFRASERTFQLLTQVAGRAGRAEKPGEVLIQTYHPE 550 (679)
T ss_pred cCCCCEEEEChhhccCCCCCCcCEEEEEcCchhccCCccchHHHHHHHHHHHHhhccCCCCCCEEEEEeCCCC
Confidence 9999999999999999999999999765543 22 2568999999999999999997755443
No 85
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=100.00 E-value=2.1e-32 Score=269.87 Aligned_cols=374 Identities=20% Similarity=0.208 Sum_probs=254.4
Q ss_pred HHHHHhcCCCCCcHHHHHHHHHhhcCCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcHHHHHHHH
Q 010357 31 DQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVY 110 (512)
Q Consensus 31 ~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~ 110 (512)
..+.-.++|+ |-.+|++|+..+..|.+++|.|+|.+|||+++..++.-...+ +.+++|-+|.++|.+|-+
T Consensus 288 pe~a~~~pFe-lD~FQk~Ai~~lerg~SVFVAAHTSAGKTvVAEYAialaq~h---------~TR~iYTSPIKALSNQKf 357 (1248)
T KOG0947|consen 288 PEMALIYPFE-LDTFQKEAIYHLERGDSVFVAAHTSAGKTVVAEYAIALAQKH---------MTRTIYTSPIKALSNQKF 357 (1248)
T ss_pred hhHHhhCCCC-ccHHHHHHHHHHHcCCeEEEEecCCCCcchHHHHHHHHHHhh---------ccceEecchhhhhccchH
Confidence 3333456886 999999999999999999999999999999988777655444 788999999999999999
Q ss_pred HHHHHHHhhcCCcceEEEeCCCchHHHHHHHcCCCCEEEeCChHHHHHHhhcCCCcCCceeEEEEcchhHHHhcCchHHH
Q 010357 111 EILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEI 190 (512)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lV~DEah~l~~~~~~~~~ 190 (512)
+.|+.-+.. ++.++|+.. +...+.++|+|.|.|.+++.+ +.-..+++.+|||||+|-+.+..++...
T Consensus 358 RDFk~tF~D-----vgLlTGDvq-------inPeAsCLIMTTEILRsMLYr-gadliRDvE~VIFDEVHYiND~eRGvVW 424 (1248)
T KOG0947|consen 358 RDFKETFGD-----VGLLTGDVQ-------INPEASCLIMTTEILRSMLYR-GADLIRDVEFVIFDEVHYINDVERGVVW 424 (1248)
T ss_pred HHHHHhccc-----cceeeccee-------eCCCcceEeehHHHHHHHHhc-ccchhhccceEEEeeeeecccccccccc
Confidence 999887543 345555533 344568999999999999987 4444578999999999999999999999
Q ss_pred HHHHHHhccCCCCCCCCCCcccccceeEEEEEEecchhhHHHHHhhcC---CCeEEccCCCcCCCCccccccCCcccchh
Q 010357 191 EEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLE---TPVLIGLDEKKLPEDKSHVRFGSLESDVK 267 (512)
Q Consensus 191 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (512)
+.++-++|+ ..++|++|||+|+..+...|..-. .-.+++....++|...+......+.+-..
T Consensus 425 EEViIMlP~---------------HV~~IlLSATVPN~~EFA~WIGRtK~K~IyViST~kRPVPLEh~l~t~~~l~kiid 489 (1248)
T KOG0947|consen 425 EEVIIMLPR---------------HVNFILLSATVPNTLEFADWIGRTKQKTIYVISTSKRPVPLEHYLYTKKSLFKIID 489 (1248)
T ss_pred eeeeeeccc---------------cceEEEEeccCCChHHHHHHhhhccCceEEEEecCCCccceEEEEEeccceehhhc
Confidence 999999998 999999999999987765554322 22233333444444433332211111000
Q ss_pred h-----------hccCC---Ccccc----cccc-ccccccceeeeEEE------ecCCchH--HHHHHHHHhhhccccCc
Q 010357 268 E-----------EVEHP---STTMR----STTE-DFKLPAQLVQRYVK------VPCGSRL--AVLLSILKHLFDTEVSQ 320 (512)
Q Consensus 268 ~-----------~~~~~---~~~~~----~~~~-~~~~~~~~~~~~~~------~~~~~k~--~~l~~~l~~~~~~~~~~ 320 (512)
. ..... ..... .... .......-...+.. ....++. ....+++..+. ...--
T Consensus 490 q~g~fl~~~~~~a~~~~~~~ak~~~~~~~~~~~~rgs~~~ggk~~~~~g~~r~~~~~~nrr~~~~~l~lin~L~-k~~lL 568 (1248)
T KOG0947|consen 490 QNGIFLLKGIKDAKDSLKKEAKFVDVEKSDARGGRGSQKRGGKTNYHNGGSRGSGIGKNRRKQPTWLDLINHLR-KKNLL 568 (1248)
T ss_pred ccchhhhhcchhhhhhhcccccccccccccccccccccccCCcCCCCCCCcccccccccccccchHHHHHHHHh-hcccC
Confidence 0 00000 00000 0000 00000000000000 0011111 23444444432 23356
Q ss_pred eEEEEeecchhhhhHHHhhhhhcCCCCCCC-----------------hhHHHh-----hhhccceeeecCCCCHHHHHHH
Q 010357 321 KLVVFFSTCDAVDFHYSLLSEFQWSPHSQP-----------------DMELKQ-----LFLRCKTFRLHGNMKQEDRRTT 378 (512)
Q Consensus 321 ~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~-----------------~~~~~~-----~~~~~~v~~l~g~~~~~~r~~~ 378 (512)
+++|||-+++.|+..+++|........... +..+.. -++..++..+||++-+--++-+
T Consensus 569 P~VvFvFSkkrCde~a~~L~~~nL~~~~EKseV~lfl~k~~~rLk~~DR~LPQvl~m~~ll~RGiaVHH~GlLPivKE~V 648 (1248)
T KOG0947|consen 569 PVVVFVFSKKRCDEYADYLTNLNLTDSKEKSEVHLFLSKAVARLKGEDRNLPQVLSMRSLLLRGIAVHHGGLLPIVKEVV 648 (1248)
T ss_pred ceEEEEEccccHHHHHHHHhccCcccchhHHHHHHHHHHHHHhcChhhccchHHHHHHHHHhhcchhhcccchHHHHHHH
Confidence 999999999999999999987655433211 121111 2446689999999999999999
Q ss_pred HHhhhcCCCcEEEeecccccCCCCCCCcEEEEe-----C---CCCChhHHHHhhhhcccCCC--CccEEEecCcc
Q 010357 379 FGAFKTEKKALLLSTDVAARGLDFPKVKCIIQY-----D---SAGEATEYVHRVGRTARLGE--RGDSLLFLQPV 443 (512)
Q Consensus 379 ~~~f~~~~~~vLvaT~~~~~Gldip~~~~VI~~-----~---~p~s~~~~~Q~~GRagR~g~--~g~~~~~~~~~ 443 (512)
+-.|..|-++||+||.++++|||+|.-.+|+.- + .--.+-.|.|++|||||.|- .|.+++++...
T Consensus 649 E~LFqrGlVKVLFATETFAMGVNMPARtvVF~Sl~KhDG~efR~L~PGEytQMAGRAGRRGlD~tGTVii~~~~~ 723 (1248)
T KOG0947|consen 649 ELLFQRGLVKVLFATETFAMGVNMPARTVVFSSLRKHDGNEFRELLPGEYTQMAGRAGRRGLDETGTVIIMCKDS 723 (1248)
T ss_pred HHHHhcCceEEEeehhhhhhhcCCCceeEEeeehhhccCcceeecCChhHHhhhccccccccCcCceEEEEecCC
Confidence 999999999999999999999999976655521 1 22378899999999999985 57777776543
No 86
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=5.6e-31 Score=279.26 Aligned_cols=368 Identities=16% Similarity=0.209 Sum_probs=240.8
Q ss_pred HHHHHHhhcCCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHHhhcCCcceE
Q 010357 47 AQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPG 126 (512)
Q Consensus 47 ~~~~~~~~~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~ 126 (512)
.+.+..+.+++.++|+|+||||||...-..+++. . .+...++++.-|.|..+..++..+.......-...++
T Consensus 73 ~~Il~~l~~~~vvii~g~TGSGKTTqlPq~lle~--~------~~~~~~I~~tQPRRlAA~svA~RvA~elg~~lG~~VG 144 (1283)
T TIGR01967 73 EDIAEAIAENQVVIIAGETGSGKTTQLPKICLEL--G------RGSHGLIGHTQPRRLAARTVAQRIAEELGTPLGEKVG 144 (1283)
T ss_pred HHHHHHHHhCceEEEeCCCCCCcHHHHHHHHHHc--C------CCCCceEecCCccHHHHHHHHHHHHHHhCCCcceEEe
Confidence 3555666677788999999999998654333332 1 0123457777899888887777665544321112333
Q ss_pred EEeCCCchHHHHHHHcCCCCEEEeCChHHHHHHhhcCCCcCCceeEEEEcchhH-HHhcCchHH-HHHHHHHhccCCCCC
Q 010357 127 YVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADR-ILELGFGKE-IEEILDILGSRNIGS 204 (512)
Q Consensus 127 ~~~~g~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lV~DEah~-l~~~~~~~~-~~~i~~~~~~~~~~~ 204 (512)
+....++. ......|.++|++.|+..+...+ .++++++|||||||. .++.++... +..++...+
T Consensus 145 Y~vR~~~~------~s~~T~I~~~TdGiLLr~l~~d~--~L~~~~~IIIDEaHERsL~~D~LL~lLk~il~~rp------ 210 (1283)
T TIGR01967 145 YKVRFHDQ------VSSNTLVKLMTDGILLAETQQDR--FLSRYDTIIIDEAHERSLNIDFLLGYLKQLLPRRP------ 210 (1283)
T ss_pred eEEcCCcc------cCCCceeeeccccHHHHHhhhCc--ccccCcEEEEcCcchhhccchhHHHHHHHHHhhCC------
Confidence 32222221 13456899999999999887644 356899999999994 666554432 444433222
Q ss_pred CCCCCcccccceeEEEEEEecchhhHHHHHhhcCCCeEEccCCCcCCCCccccccCCcccchhhhccCCCcccccccccc
Q 010357 205 IGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLPEDKSHVRFGSLESDVKEEVEHPSTTMRSTTEDF 284 (512)
Q Consensus 205 ~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (512)
+.++|+||||+.. ..+.+.+.+.|. +.+.....+..
T Consensus 211 ----------dLKlIlmSATld~--~~fa~~F~~apv-I~V~Gr~~PVe------------------------------- 246 (1283)
T TIGR01967 211 ----------DLKIIITSATIDP--ERFSRHFNNAPI-IEVSGRTYPVE------------------------------- 246 (1283)
T ss_pred ----------CCeEEEEeCCcCH--HHHHHHhcCCCE-EEECCCcccce-------------------------------
Confidence 6799999999964 456665554443 33333221110
Q ss_pred ccccceeeeEEEec------CCchHHHHHHHHHhhhccccCceEEEEeecchhhhhHHHhhhhhcCCCCCCChhHHHhhh
Q 010357 285 KLPAQLVQRYVKVP------CGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLF 358 (512)
Q Consensus 285 ~~~~~~~~~~~~~~------~~~k~~~l~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~ 358 (512)
..|.... ..++...+...+..+... ..+.+|||+++..+++.+++.|......
T Consensus 247 -------v~Y~~~~~~~~~~~~~~~~~i~~~I~~l~~~-~~GdILVFLpg~~EI~~l~~~L~~~~~~------------- 305 (1283)
T TIGR01967 247 -------VRYRPLVEEQEDDDLDQLEAILDAVDELFAE-GPGDILIFLPGEREIRDAAEILRKRNLR------------- 305 (1283)
T ss_pred -------eEEecccccccchhhhHHHHHHHHHHHHHhh-CCCCEEEeCCCHHHHHHHHHHHHhcCCC-------------
Confidence 0010000 112445555666655433 4589999999999999999999875321
Q ss_pred hccceeeecCCCCHHHHHHHHHhhhcCCCcEEEeecccccCCCCCCCcEEEEeCCC------------------CChhHH
Q 010357 359 LRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSA------------------GEATEY 420 (512)
Q Consensus 359 ~~~~v~~l~g~~~~~~r~~~~~~f~~~~~~vLvaT~~~~~Gldip~~~~VI~~~~p------------------~s~~~~ 420 (512)
+..+..+||+|+.++|..+++.+ +..+|||||+++++|+|+|++++||+++.+ .|..+|
T Consensus 306 -~~~VlpLhg~Ls~~eQ~~vf~~~--~~rkIVLATNIAEtSLTIpgV~yVIDsGl~r~~~yd~~~~~~~L~~~~ISkasa 382 (1283)
T TIGR01967 306 -HTEILPLYARLSNKEQQRVFQPH--SGRRIVLATNVAETSLTVPGIHYVIDTGTARISRYSYRTKVQRLPIEPISQASA 382 (1283)
T ss_pred -CcEEEeccCCCCHHHHHHHhCCC--CCceEEEeccHHHhccccCCeeEEEeCCCccccccccccCccccCCccCCHHHH
Confidence 45688999999999999997765 246899999999999999999999998843 366899
Q ss_pred HHhhhhcccCCCCccEEEecCccchhHHHHHHHcCCCCCccChhhHhhhccccCCCCccccccCccchhhHHHHHHHHHH
Q 010357 421 VHRVGRTARLGERGDSLLFLQPVEMDYLQDLEKHGVSLTEYPLLKVLDSFPLYGQKPRVKKFLTTESHPWILSLQNALES 500 (512)
Q Consensus 421 ~Q~~GRagR~g~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 500 (512)
.||+|||||.| +|.||.+++..+...+.. ...-++...++..++-.+...+.. . ...+++--.|....+...++.
T Consensus 383 ~QRaGRAGR~~-~G~cyRLyte~~~~~~~~--~~~PEIlR~~L~~viL~l~~lg~~-d-i~~f~fldpP~~~~i~~A~~~ 457 (1283)
T TIGR01967 383 NQRKGRCGRVA-PGICIRLYSEEDFNSRPE--FTDPEILRTNLASVILQMLALRLG-D-IAAFPFIEAPDPRAIRDGFRL 457 (1283)
T ss_pred HHHhhhhCCCC-CceEEEecCHHHHHhhhh--ccCcccccccHHHHHHHHHhcCCC-C-cccccCCCCCCHHHHHHHHHH
Confidence 99999999997 899999999876544321 122233444555544333222211 1 123334445668889999998
Q ss_pred HHHhccccc
Q 010357 501 FIIHEILSC 509 (512)
Q Consensus 501 ~~~~~~~~~ 509 (512)
+..-+.++.
T Consensus 458 L~~LGAld~ 466 (1283)
T TIGR01967 458 LEELGALDD 466 (1283)
T ss_pred HHHCCCCCC
Confidence 888776653
No 87
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=100.00 E-value=6.4e-31 Score=269.63 Aligned_cols=337 Identities=18% Similarity=0.241 Sum_probs=261.1
Q ss_pred cCCCCHHHHHHHHHhcCCCCCcHHHHHHHHHhhc----C--CCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCce
Q 010357 22 SLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILS----G--RHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTF 95 (512)
Q Consensus 22 ~~~l~~~~~~~l~~~~~~~~~~~~Q~~~~~~~~~----~--~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (512)
.++.+.+..+.+.+.|+|. .|+-|..|+..+.+ + .|-++||.-|-|||-+++-++..+... |++
T Consensus 576 af~~d~~~q~~F~~~FPye-ET~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkAV~~---------GKQ 645 (1139)
T COG1197 576 AFPPDTEWQEEFEASFPYE-ETPDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKAVMD---------GKQ 645 (1139)
T ss_pred CCCCChHHHHHHHhcCCCc-CCHHHHHHHHHHHHHhccCCcchheeecCcCCcHHHHHHHHHHHHhcC---------CCe
Confidence 4566788888998999998 99999999998874 3 367999999999999999999888765 899
Q ss_pred EEEEcCcHHHHHHHHHHHHHHHhhcCCcceEEEeC---CCchHHHHHHHcC-CCCEEEeCChHHHHHHhhcCCCcCCcee
Q 010357 96 ALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMG---GENRSKEKARLRK-GISILVATPGRLLDHLKHTSSFLHTNLR 171 (512)
Q Consensus 96 ~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~---g~~~~~~~~~~~~-~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~ 171 (512)
|.++|||.-||+|.++.|+..+..++. .+..+.. ..........+.. ..||+|+|...| . +...+.+++
T Consensus 646 VAvLVPTTlLA~QHy~tFkeRF~~fPV-~I~~LSRF~s~kE~~~il~~la~G~vDIvIGTHrLL----~--kdv~FkdLG 718 (1139)
T COG1197 646 VAVLVPTTLLAQQHYETFKERFAGFPV-RIEVLSRFRSAKEQKEILKGLAEGKVDIVIGTHRLL----S--KDVKFKDLG 718 (1139)
T ss_pred EEEEcccHHhHHHHHHHHHHHhcCCCe-eEEEecccCCHHHHHHHHHHHhcCCccEEEechHhh----C--CCcEEecCC
Confidence 999999999999999999999987763 3333332 2223333344444 489999996443 2 344566999
Q ss_pred EEEEcchhHHHhcCchHHHHHHHHHhccCCCCCCCCCCcccccceeEEEEEEecchhhHHHHHhhcCCCeEEccCCCcCC
Q 010357 172 WIIFDEADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLP 251 (512)
Q Consensus 172 ~lV~DEah~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (512)
++|+||-|+ |+..-..-++.++. +..++-|||||-++.-.+.-..+++-.++..++..
T Consensus 719 LlIIDEEqR-----FGVk~KEkLK~Lr~---------------~VDvLTLSATPIPRTL~Msm~GiRdlSvI~TPP~~-- 776 (1139)
T COG1197 719 LLIIDEEQR-----FGVKHKEKLKELRA---------------NVDVLTLSATPIPRTLNMSLSGIRDLSVIATPPED-- 776 (1139)
T ss_pred eEEEechhh-----cCccHHHHHHHHhc---------------cCcEEEeeCCCCcchHHHHHhcchhhhhccCCCCC--
Confidence 999999999 88888888888877 88999999999877766666665555555444332
Q ss_pred CCccccccCCcccchhhhccCCCccccccccccccccceeeeEEEecCCchHHHHHHHHHhhhccccCceEEEEeecchh
Q 010357 252 EDKSHVRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDA 331 (512)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~lvf~~~~~~ 331 (512)
+--.+.++. +.+ ...+.+.+..- ...++.+....|.++.
T Consensus 777 ------------------------------------R~pV~T~V~--~~d-~~~ireAI~RE--l~RgGQvfYv~NrV~~ 815 (1139)
T COG1197 777 ------------------------------------RLPVKTFVS--EYD-DLLIREAILRE--LLRGGQVFYVHNRVES 815 (1139)
T ss_pred ------------------------------------CcceEEEEe--cCC-hHHHHHHHHHH--HhcCCEEEEEecchhh
Confidence 111122222 112 22333333332 2457899999999999
Q ss_pred hhhHHHhhhhhcCCCCCCChhHHHhhhhccceeeecCCCCHHHHHHHHHhhhcCCCcEEEeecccccCCCCCCCcEEEEe
Q 010357 332 VDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQY 411 (512)
Q Consensus 332 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~l~g~~~~~~r~~~~~~f~~~~~~vLvaT~~~~~Gldip~~~~VI~~ 411 (512)
.+.+++.|++. +|..++.+.||.|+..+-+.++..|.+|+.+|||||.+++.|||+|+++.+|..
T Consensus 816 Ie~~~~~L~~L---------------VPEarI~vaHGQM~e~eLE~vM~~F~~g~~dVLv~TTIIEtGIDIPnANTiIIe 880 (1139)
T COG1197 816 IEKKAERLREL---------------VPEARIAVAHGQMRERELEEVMLDFYNGEYDVLVCTTIIETGIDIPNANTIIIE 880 (1139)
T ss_pred HHHHHHHHHHh---------------CCceEEEEeecCCCHHHHHHHHHHHHcCCCCEEEEeeeeecCcCCCCCceEEEe
Confidence 99999999887 568899999999999999999999999999999999999999999999999876
Q ss_pred CCC-CChhHHHHhhhhcccCCCCccEEEecCccc------hhHHHHHHH
Q 010357 412 DSA-GEATEYVHRVGRTARLGERGDSLLFLQPVE------MDYLQDLEK 453 (512)
Q Consensus 412 ~~p-~s~~~~~Q~~GRagR~g~~g~~~~~~~~~~------~~~~~~l~~ 453 (512)
+.. ....++.|.-||+||..+.+.|+.++-+.. .+.++.+++
T Consensus 881 ~AD~fGLsQLyQLRGRVGRS~~~AYAYfl~p~~k~lT~~A~kRL~aI~~ 929 (1139)
T COG1197 881 RADKFGLAQLYQLRGRVGRSNKQAYAYFLYPPQKALTEDAEKRLEAIAS 929 (1139)
T ss_pred ccccccHHHHHHhccccCCccceEEEEEeecCccccCHHHHHHHHHHHh
Confidence 654 368899999999999999999999987543 445555554
No 88
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=100.00 E-value=4.4e-31 Score=270.79 Aligned_cols=367 Identities=20% Similarity=0.224 Sum_probs=250.9
Q ss_pred HhcCCCCCcHHHHHHHHHhhcCCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcHHHHHHHHHHHH
Q 010357 35 ERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILH 114 (512)
Q Consensus 35 ~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~ 114 (512)
..+||. |-++|++++..+..+.+++|+||||+|||+++..++...+.+ +.+++|.+|.++|.+|.+..+.
T Consensus 114 ~~~~F~-LD~fQ~~a~~~Ler~esVlV~ApTssGKTvVaeyAi~~al~~---------~qrviYTsPIKALsNQKyrdl~ 183 (1041)
T COG4581 114 REYPFE-LDPFQQEAIAILERGESVLVCAPTSSGKTVVAEYAIALALRD---------GQRVIYTSPIKALSNQKYRDLL 183 (1041)
T ss_pred HhCCCC-cCHHHHHHHHHHhCCCcEEEEccCCCCcchHHHHHHHHHHHc---------CCceEeccchhhhhhhHHHHHH
Confidence 457998 999999999999999999999999999999999999888877 7779999999999999999988
Q ss_pred HHHhhcCCcceEEEeCCCchHHHHHHHcCCCCEEEeCChHHHHHHhhcCCCcCCceeEEEEcchhHHHhcCchHHHHHHH
Q 010357 115 KLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEIL 194 (512)
Q Consensus 115 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lV~DEah~l~~~~~~~~~~~i~ 194 (512)
..+... ...++..+|..+ ++....++|+|.|.|.+++.. ....+..+..|||||+|.+.+..++...+.++
T Consensus 184 ~~fgdv-~~~vGL~TGDv~-------IN~~A~clvMTTEILRnMlyr-g~~~~~~i~~ViFDEvHyi~D~eRG~VWEE~I 254 (1041)
T COG4581 184 AKFGDV-ADMVGLMTGDVS-------INPDAPCLVMTTEILRNMLYR-GSESLRDIEWVVFDEVHYIGDRERGVVWEEVI 254 (1041)
T ss_pred HHhhhh-hhhccceeccee-------eCCCCceEEeeHHHHHHHhcc-CcccccccceEEEEeeeeccccccchhHHHHH
Confidence 776533 223455555543 345678999999999998887 45667789999999999999999999999999
Q ss_pred HHhccCCCCCCCCCCcccccceeEEEEEEecchhhHHHHHhh--cCCCe-EEccCCCcCCCCccccccCCcccchhhhcc
Q 010357 195 DILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKIS--LETPV-LIGLDEKKLPEDKSHVRFGSLESDVKEEVE 271 (512)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (512)
-.+|+ ..+++++|||+++..+.-.|.. -..+. ++..+..+.|.......-..+- +..+...
T Consensus 255 i~lP~---------------~v~~v~LSATv~N~~EF~~Wi~~~~~~~~~vv~t~~RpvPL~~~~~~~~~l~-~lvde~~ 318 (1041)
T COG4581 255 ILLPD---------------HVRFVFLSATVPNAEEFAEWIQRVHSQPIHVVSTEHRPVPLEHFVYVGKGLF-DLVDEKK 318 (1041)
T ss_pred HhcCC---------------CCcEEEEeCCCCCHHHHHHHHHhccCCCeEEEeecCCCCCeEEEEecCCcee-eeecccc
Confidence 99987 8899999999998765544433 23333 4444444433332222111111 1111111
Q ss_pred C-----CCccccccc---cccccccceeeeEE---------EecCCchHHHHHHHHHhhhccccCceEEEEeecchhhhh
Q 010357 272 H-----PSTTMRSTT---EDFKLPAQLVQRYV---------KVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDF 334 (512)
Q Consensus 272 ~-----~~~~~~~~~---~~~~~~~~~~~~~~---------~~~~~~k~~~l~~~l~~~~~~~~~~~~lvf~~~~~~~~~ 334 (512)
. ......... ....-.++-...+. ......+...+...+. ....-++|+|+-++..|+.
T Consensus 319 ~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~iv~~l~----~~~~lP~I~F~FSr~~Ce~ 394 (1041)
T COG4581 319 KFNAENFPSANRSLSCFSEKVRETDDGDVGRYARRTKALRGSAKGPAGRPEIVNKLD----KDNLLPAIVFSFSRRGCEE 394 (1041)
T ss_pred cchhhcchhhhhhhhccchhccccCccccccccccccccCCcccccccchHHHhhhh----hhcCCceEEEEEchhhHHH
Confidence 0 000000000 00000000000000 0011111122222222 2345799999999999999
Q ss_pred HHHhhhhhcCCCCCCChh------------------HHH------hhhhccceeeecCCCCHHHHHHHHHhhhcCCCcEE
Q 010357 335 HYSLLSEFQWSPHSQPDM------------------ELK------QLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALL 390 (512)
Q Consensus 335 l~~~l~~~~~~~~~~~~~------------------~~~------~~~~~~~v~~l~g~~~~~~r~~~~~~f~~~~~~vL 390 (512)
.+..+...........+. .+. ...+..++.++|++|-+..+..++..|..|-++|+
T Consensus 395 ~a~~~~~ldl~~~~~~e~~i~~ii~~~i~~L~~ed~~lp~~~~~~~~~L~RGiavHH~GlLP~~K~~vE~Lfq~GLvkvv 474 (1041)
T COG4581 395 AAQILSTLDLVLTEEKERAIREIIDHAIGDLAEEDRELPLQILEISALLLRGIAVHHAGLLPAIKELVEELFQEGLVKVV 474 (1041)
T ss_pred HHHHhcccccccCCcHHHHHHHHHHHHHhhcChhhhcCcccHHHHHHHHhhhhhhhccccchHHHHHHHHHHhccceeEE
Confidence 999887543332222111 110 11235567799999999999999999999999999
Q ss_pred EeecccccCCCCCCCcEEEEeC---------CCCChhHHHHhhhhcccCCCC--ccEEEecC
Q 010357 391 LSTDVAARGLDFPKVKCIIQYD---------SAGEATEYVHRVGRTARLGER--GDSLLFLQ 441 (512)
Q Consensus 391 vaT~~~~~Gldip~~~~VI~~~---------~p~s~~~~~Q~~GRagR~g~~--g~~~~~~~ 441 (512)
+||.+++.|+|+|.-++|+ .. ..-++..|.|+.|||||.|.. |.++++-.
T Consensus 475 FaTeT~s~GiNmPartvv~-~~l~K~dG~~~r~L~~gEy~QmsGRAGRRGlD~~G~vI~~~~ 535 (1041)
T COG4581 475 FATETFAIGINMPARTVVF-TSLSKFDGNGHRWLSPGEYTQMSGRAGRRGLDVLGTVIVIEP 535 (1041)
T ss_pred eehhhhhhhcCCcccceee-eeeEEecCCceeecChhHHHHhhhhhccccccccceEEEecC
Confidence 9999999999999766555 22 345899999999999999965 77777633
No 89
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=99.98 E-value=6.4e-32 Score=260.25 Aligned_cols=376 Identities=22% Similarity=0.243 Sum_probs=254.9
Q ss_pred HhcCCCCCcHHHHHHHHHhhcCCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcHHHHHHHHHHHH
Q 010357 35 ERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILH 114 (512)
Q Consensus 35 ~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~ 114 (512)
+.|+|. +-|+|..++.-+-++.+++|.|.|.+|||.++-.+++..+.. ..++||-.|.++|.+|-++++.
T Consensus 124 k~YPF~-LDpFQ~~aI~Cidr~eSVLVSAHTSAGKTVVAeYAIA~sLr~---------kQRVIYTSPIKALSNQKYREl~ 193 (1041)
T KOG0948|consen 124 KTYPFT-LDPFQSTAIKCIDRGESVLVSAHTSAGKTVVAEYAIAMSLRE---------KQRVIYTSPIKALSNQKYRELL 193 (1041)
T ss_pred cCCCcc-cCchHhhhhhhhcCCceEEEEeecCCCcchHHHHHHHHHHHh---------cCeEEeeChhhhhcchhHHHHH
Confidence 456886 999999999999999999999999999999999999999977 7889999999999999999988
Q ss_pred HHHhhcCCcceEEEeCCCchHHHHHHHcCCCCEEEeCChHHHHHHhhcCCCcCCceeEEEEcchhHHHhcCchHHHHHHH
Q 010357 115 KLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEIL 194 (512)
Q Consensus 115 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lV~DEah~l~~~~~~~~~~~i~ 194 (512)
.-+.. ++..+|+.. +...+..+|+|.|.|...+.+ +.-.+..+.+|||||+|-|.+..++...+.-+
T Consensus 194 ~EF~D-----VGLMTGDVT-------InP~ASCLVMTTEILRsMLYR-GSEvmrEVaWVIFDEIHYMRDkERGVVWEETI 260 (1041)
T KOG0948|consen 194 EEFKD-----VGLMTGDVT-------INPDASCLVMTTEILRSMLYR-GSEVMREVAWVIFDEIHYMRDKERGVVWEETI 260 (1041)
T ss_pred HHhcc-----cceeeccee-------eCCCCceeeeHHHHHHHHHhc-cchHhheeeeEEeeeehhccccccceeeeeeE
Confidence 76543 445555543 334567999999999998887 44446689999999999999998888888877
Q ss_pred HHhccCCCCCCCCCCcccccceeEEEEEEecchhhHHHHHhh--cCCCe-EEccCCCcCCCCccccccCCccc---chhh
Q 010357 195 DILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKIS--LETPV-LIGLDEKKLPEDKSHVRFGSLES---DVKE 268 (512)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~---~~~~ 268 (512)
-.+|+ +.+.+++|||+|+..+..-|.. -..|. ++..+.. +....++.+..... ...+
T Consensus 261 IllP~---------------~vr~VFLSATiPNA~qFAeWI~~ihkQPcHVVYTdyR--PTPLQHyifP~ggdGlylvVD 323 (1041)
T KOG0948|consen 261 ILLPD---------------NVRFVFLSATIPNARQFAEWICHIHKQPCHVVYTDYR--PTPLQHYIFPAGGDGLYLVVD 323 (1041)
T ss_pred Eeccc---------------cceEEEEeccCCCHHHHHHHHHHHhcCCceEEeecCC--CCcceeeeecCCCCeeEEEEe
Confidence 77777 8999999999998765444332 23333 3322333 22333332221111 1111
Q ss_pred hcc--CCCcccc-----ccccccccccceeeeEEEec---CCchHHHHHHHHHhhhccccCceEEEEeecchhhhhHHHh
Q 010357 269 EVE--HPSTTMR-----STTEDFKLPAQLVQRYVKVP---CGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSL 338 (512)
Q Consensus 269 ~~~--~~~~~~~-----~~~~~~~~~~~~~~~~~~~~---~~~k~~~l~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~ 338 (512)
... +..+... ...........-......-. ...--..+..+++-+.. ....++|||+-++++|+.++-.
T Consensus 324 ek~~FrednF~~am~~l~~~~~~~~~~~~~~k~~kG~~~~~~~~~s~i~kiVkmi~~-~~~~PVIvFSFSkkeCE~~Alq 402 (1041)
T KOG0948|consen 324 EKGKFREDNFQKAMSVLRKAGESDGKKKANKKGRKGGTGGKGPGDSDIYKIVKMIME-RNYLPVIVFSFSKKECEAYALQ 402 (1041)
T ss_pred cccccchHHHHHHHHHhhccCCCccccccccccccCCcCCCCCCcccHHHHHHHHHh-hcCCceEEEEecHhHHHHHHHh
Confidence 110 0000000 00000000000000000000 01111234444444432 3457999999999999999988
Q ss_pred hhhhcCCCCCCC-----------------hhHHH-----hhhhccceeeecCCCCHHHHHHHHHhhhcCCCcEEEeeccc
Q 010357 339 LSEFQWSPHSQP-----------------DMELK-----QLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVA 396 (512)
Q Consensus 339 l~~~~~~~~~~~-----------------~~~~~-----~~~~~~~v~~l~g~~~~~~r~~~~~~f~~~~~~vLvaT~~~ 396 (512)
+........... +..+. .-++..+++++||++-+-.++.++=.|.+|-+++|+||.++
T Consensus 403 m~kldfN~deEk~~V~~iF~nAi~~LseeDr~LPqie~iLPLL~RGIGIHHsGLLPIlKE~IEILFqEGLvKvLFATETF 482 (1041)
T KOG0948|consen 403 MSKLDFNTDEEKELVETIFNNAIDQLSEEDRELPQIENILPLLRRGIGIHHSGLLPILKEVIEILFQEGLVKVLFATETF 482 (1041)
T ss_pred hccCcCCChhHHHHHHHHHHHHHHhcChhhccchHHHHHHHHHHhccccccccchHHHHHHHHHHHhccHHHHHHhhhhh
Confidence 877655533211 11111 12558899999999999999999999999999999999999
Q ss_pred ccCCCCCCCcEEEEeCCC---------CChhHHHHhhhhcccCCC--CccEEEecCc-cchhHHHHHH
Q 010357 397 ARGLDFPKVKCIIQYDSA---------GEATEYVHRVGRTARLGE--RGDSLLFLQP-VEMDYLQDLE 452 (512)
Q Consensus 397 ~~Gldip~~~~VI~~~~p---------~s~~~~~Q~~GRagR~g~--~g~~~~~~~~-~~~~~~~~l~ 452 (512)
+.|+|+|.-++|+. ..- -|.-.|+|+.|||||.|. .|.||++++. -+....+.+.
T Consensus 483 siGLNMPAkTVvFT-~~rKfDG~~fRwissGEYIQMSGRAGRRG~DdrGivIlmiDekm~~~~ak~m~ 549 (1041)
T KOG0948|consen 483 SIGLNMPAKTVVFT-AVRKFDGKKFRWISSGEYIQMSGRAGRRGIDDRGIVILMIDEKMEPQVAKDML 549 (1041)
T ss_pred hhccCCcceeEEEe-eccccCCcceeeecccceEEecccccccCCCCCceEEEEecCcCCHHHHHHHh
Confidence 99999997665552 211 266789999999999996 4888888875 3344444443
No 90
>PRK09694 helicase Cas3; Provisional
Probab=99.98 E-value=5.8e-30 Score=265.39 Aligned_cols=340 Identities=17% Similarity=0.157 Sum_probs=204.6
Q ss_pred CCCcHHHHHHHHHhhcCCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHHhh
Q 010357 40 EAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHR 119 (512)
Q Consensus 40 ~~~~~~Q~~~~~~~~~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~ 119 (512)
.+|+|+|+.+.........+++.||||+|||.+++.++...+.. +....++|.+||+++++|+++.+..+...
T Consensus 285 ~~p~p~Q~~~~~~~~~pgl~ileApTGsGKTEAAL~~A~~l~~~-------~~~~gi~~aLPT~Atan~m~~Rl~~~~~~ 357 (878)
T PRK09694 285 YQPRQLQTLVDALPLQPGLTIIEAPTGSGKTEAALAYAWRLIDQ-------GLADSIIFALPTQATANAMLSRLEALASK 357 (878)
T ss_pred CCChHHHHHHHhhccCCCeEEEEeCCCCCHHHHHHHHHHHHHHh-------CCCCeEEEECcHHHHHHHHHHHHHHHHHH
Confidence 36999999886544445678999999999999998887765543 23467999999999999999998876543
Q ss_pred c-CCcceEEEeCCCchH------------------------HHHHHHcCC---CCEEEeCChHHHHHHhhcCCCcCCce-
Q 010357 120 F-HWIVPGYVMGGENRS------------------------KEKARLRKG---ISILVATPGRLLDHLKHTSSFLHTNL- 170 (512)
Q Consensus 120 ~-~~~~~~~~~~g~~~~------------------------~~~~~~~~~---~~Iiv~Tp~~l~~~l~~~~~~~~~~~- 170 (512)
. +...+...+|..... .+.....+. .+|+|+|.++++......+...+..+
T Consensus 358 ~f~~~~v~L~Hg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~kr~llapi~V~TiDQlL~a~l~~kh~~lR~~~ 437 (878)
T PRK09694 358 LFPSPNLILAHGNSRFNHLFQSLKSRAATEQGQEEAWVQCCEWLSQSNKRVFLGQIGVCTIDQVLISVLPVKHRFIRGFG 437 (878)
T ss_pred hcCCCceEeecCcchhhhhhhhhhcccccccccchhhhHHHHHHhhhhhhhhcCCEEEcCHHHHHHHHHccchHHHHHHh
Confidence 2 222333444332110 111111111 58999999998755444332222222
Q ss_pred ---eEEEEcchhHHHhcCchHHHHHHHHHhccCCCCCCCCCCcccccceeEEEEEEecchhhHHHHHhhcCCCeEEccCC
Q 010357 171 ---RWIIFDEADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDE 247 (512)
Q Consensus 171 ---~~lV~DEah~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~ 247 (512)
++|||||+|.+.. .....+..++..+... ..++|+||||+|................+.. .
T Consensus 438 La~svvIiDEVHAyD~-ym~~lL~~~L~~l~~~--------------g~~vIllSATLP~~~r~~L~~a~~~~~~~~~-~ 501 (878)
T PRK09694 438 LGRSVLIVDEVHAYDA-YMYGLLEAVLKAQAQA--------------GGSVILLSATLPATLKQKLLDTYGGHDPVEL-S 501 (878)
T ss_pred hccCeEEEechhhCCH-HHHHHHHHHHHHHHhc--------------CCcEEEEeCCCCHHHHHHHHHHhcccccccc-c
Confidence 4899999998633 2444566666655432 5679999999997665433221111100000 0
Q ss_pred CcCCCCccccccCCcccchhhhccCCCccccccccccccccceeeeEEEecCCchHHHHHHHHHhhhccccCceEEEEee
Q 010357 248 KKLPEDKSHVRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFS 327 (512)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~lvf~~ 327 (512)
...+ .+...... . . .................+.-.............+.+.+.+.. ..+++++||||
T Consensus 502 ~~YP----lvt~~~~~----~-~--~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~l~~i~~~~--~~g~~vLVf~N 568 (878)
T PRK09694 502 SAYP----LITWRGVN----G-A--QRFDLSAHPEQLPARFTIQLEPICLADMLPDLTLLQRMIAAA--NAGAQVCLICN 568 (878)
T ss_pred cccc----cccccccc----c-c--eeeeccccccccCcceEEEEEeeccccccCHHHHHHHHHHHH--hcCCEEEEEEC
Confidence 0000 00000000 0 0 000000000000000111000011111111123333333321 34679999999
Q ss_pred cchhhhhHHHhhhhhcCCCCCCChhHHHhhhhccceeeecCCCCHHHH----HHHHHhh-hcCC---CcEEEeecccccC
Q 010357 328 TCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDR----RTTFGAF-KTEK---KALLLSTDVAARG 399 (512)
Q Consensus 328 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~l~g~~~~~~r----~~~~~~f-~~~~---~~vLvaT~~~~~G 399 (512)
+++.++.+++.|+..... ...+..+||+++..+| +++++.| ++|+ ..|||||++++.|
T Consensus 569 TV~~Aq~ly~~L~~~~~~--------------~~~v~llHsrf~~~dR~~~E~~vl~~fgk~g~r~~~~ILVaTQViE~G 634 (878)
T PRK09694 569 LVDDAQKLYQRLKELNNT--------------QVDIDLFHARFTLNDRREKEQRVIENFGKNGKRNQGRILVATQVVEQS 634 (878)
T ss_pred CHHHHHHHHHHHHhhCCC--------------CceEEEEeCCCCHHHHHHHHHHHHHHHHhcCCcCCCeEEEECcchhhe
Confidence 999999999999865211 3578999999999999 4567778 5565 3699999999999
Q ss_pred CCCCCCcEEEEeCCCCChhHHHHhhhhcccCCC
Q 010357 400 LDFPKVKCIIQYDSAGEATEYVHRVGRTARLGE 432 (512)
Q Consensus 400 ldip~~~~VI~~~~p~s~~~~~Q~~GRagR~g~ 432 (512)
+|+ +++++|....| ...++||+||++|.+.
T Consensus 635 LDI-d~DvlItdlaP--idsLiQRaGR~~R~~~ 664 (878)
T PRK09694 635 LDL-DFDWLITQLCP--VDLLFQRLGRLHRHHR 664 (878)
T ss_pred eec-CCCeEEECCCC--HHHHHHHHhccCCCCC
Confidence 999 58999988777 7899999999999875
No 91
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.97 E-value=4.5e-30 Score=255.33 Aligned_cols=305 Identities=20% Similarity=0.220 Sum_probs=197.2
Q ss_pred EEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHHhhcCCcceEEEeCCCchHHH--
Q 010357 60 LVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKE-- 137 (512)
Q Consensus 60 lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-- 137 (512)
++.||||||||.+|+..+...+.. +.++|+++|+++|+.|+.+.++..+. ..+..+.++......
T Consensus 1 LL~g~TGsGKT~v~l~~i~~~l~~---------g~~vLvlvP~i~L~~Q~~~~l~~~f~----~~v~vlhs~~~~~er~~ 67 (505)
T TIGR00595 1 LLFGVTGSGKTEVYLQAIEKVLAL---------GKSVLVLVPEIALTPQMIQRFKYRFG----SQVAVLHSGLSDSEKLQ 67 (505)
T ss_pred CccCCCCCCHHHHHHHHHHHHHHc---------CCeEEEEeCcHHHHHHHHHHHHHHhC----CcEEEEECCCCHHHHHH
Confidence 578999999999998877776654 77899999999999999999987653 234556665544332
Q ss_pred -HHH-HcCCCCEEEeCChHHHHHHhhcCCCcCCceeEEEEcchhHHHhcC---ch---HHHHHHHHHhccCCCCCCCCCC
Q 010357 138 -KAR-LRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELG---FG---KEIEEILDILGSRNIGSIGEGN 209 (512)
Q Consensus 138 -~~~-~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lV~DEah~l~~~~---~~---~~~~~i~~~~~~~~~~~~~~~~ 209 (512)
+.. .....+|+|+|+..++. .+.++++|||||+|+...+. .. ..+........
T Consensus 68 ~~~~~~~g~~~IVVGTrsalf~--------p~~~l~lIIVDEeh~~sykq~~~p~y~ar~~a~~ra~~~----------- 128 (505)
T TIGR00595 68 AWRKVKNGEILVVIGTRSALFL--------PFKNLGLIIVDEEHDSSYKQEEGPRYHARDVAVYRAKKF----------- 128 (505)
T ss_pred HHHHHHcCCCCEEECChHHHcC--------cccCCCEEEEECCCccccccccCCCCcHHHHHHHHHHhc-----------
Confidence 222 23457999999987642 24588999999999865332 11 12222222222
Q ss_pred cccccceeEEEEEEecchhhHHHHHhhcCCCeEEccCCCcCCCCccccccCCcccchhhhccCCCccccccccccccccc
Q 010357 210 EVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLPEDKSHVRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQ 289 (512)
Q Consensus 210 ~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (512)
..+++++|||++........ .+....+.............+.+
T Consensus 129 -----~~~vil~SATPsles~~~~~--~g~~~~~~l~~r~~~~~~p~v~v------------------------------ 171 (505)
T TIGR00595 129 -----NCPVVLGSATPSLESYHNAK--QKAYRLLVLTRRVSGRKPPEVKL------------------------------ 171 (505)
T ss_pred -----CCCEEEEeCCCCHHHHHHHh--cCCeEEeechhhhcCCCCCeEEE------------------------------
Confidence 77899999997744322221 11122222211110000000000
Q ss_pred eeeeEEEecC----CchHHHHHHHHHhhhccccCceEEEEeecchhhhhHHHhhhhhc----------------------
Q 010357 290 LVQRYVKVPC----GSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQ---------------------- 343 (512)
Q Consensus 290 ~~~~~~~~~~----~~k~~~l~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~---------------------- 343 (512)
..... ..-...+.+.+.+.+ ..++++|||+|++..+..+...=....
T Consensus 172 -----id~~~~~~~~~ls~~l~~~i~~~l--~~g~qvLvflnrrGya~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch 244 (505)
T TIGR00595 172 -----IDMRKEPRQSFLSPELITAIEQTL--AAGEQSILFLNRRGYSKNLLCRSCGYILCCPNCDVSLTYHKKEGKLRCH 244 (505)
T ss_pred -----EecccccccCCccHHHHHHHHHHH--HcCCcEEEEEeCCcCCCeeEhhhCcCccCCCCCCCceEEecCCCeEEcC
Confidence 00000 011234555565553 345799999999876543322211000
Q ss_pred ------------CCCC-----------CCChhHHHhhhhccceeeecCCCCHHHH--HHHHHhhhcCCCcEEEeeccccc
Q 010357 344 ------------WSPH-----------SQPDMELKQLFLRCKTFRLHGNMKQEDR--RTTFGAFKTEKKALLLSTDVAAR 398 (512)
Q Consensus 344 ------------~~~~-----------~~~~~~~~~~~~~~~v~~l~g~~~~~~r--~~~~~~f~~~~~~vLvaT~~~~~ 398 (512)
..++ +..++.+...+|+.++..+|++++...+ +.+++.|++|+.+|||+|++++.
T Consensus 245 ~Cg~~~~~~~~Cp~C~s~~l~~~g~Gte~~~e~l~~~fp~~~v~~~d~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~i~k 324 (505)
T TIGR00595 245 YCGYQEPIPKTCPQCGSEDLVYKGYGTEQVEEELAKLFPGARIARIDSDTTSRKGAHEALLNQFANGKADILIGTQMIAK 324 (505)
T ss_pred CCcCcCCCCCCCCCCCCCeeEeecccHHHHHHHHHhhCCCCcEEEEecccccCccHHHHHHHHHhcCCCCEEEeCccccc
Confidence 0011 1125666778899999999999987766 89999999999999999999999
Q ss_pred CCCCCCCcEEEEeCCCC------------ChhHHHHhhhhcccCCCCccEEEec
Q 010357 399 GLDFPKVKCIIQYDSAG------------EATEYVHRVGRTARLGERGDSLLFL 440 (512)
Q Consensus 399 Gldip~~~~VI~~~~p~------------s~~~~~Q~~GRagR~g~~g~~~~~~ 440 (512)
|+|+|++++|+..+... ....|.|++||+||.++.|.+++..
T Consensus 325 G~d~~~v~lV~vl~aD~~l~~pd~ra~E~~~~ll~q~~GRagR~~~~g~viiqt 378 (505)
T TIGR00595 325 GHHFPNVTLVGVLDADSGLHSPDFRAAERGFQLLTQVAGRAGRAEDPGQVIIQT 378 (505)
T ss_pred CCCCCcccEEEEEcCcccccCcccchHHHHHHHHHHHHhccCCCCCCCEEEEEe
Confidence 99999999986544331 2356899999999999999888654
No 92
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.97 E-value=4.2e-29 Score=222.97 Aligned_cols=202 Identities=44% Similarity=0.710 Sum_probs=174.3
Q ss_pred cccCCCCHHHHHHHHHhcCCCCCcHHHHHHHHHhhcCCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEE
Q 010357 20 FSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVL 99 (512)
Q Consensus 20 ~~~~~l~~~~~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil 99 (512)
|+++++++.+.+.+.+ +|+..|+++|+++++.+.+++++++++|||+|||+++++++++.+..... ..+.+++|+
T Consensus 1 ~~~~~~~~~i~~~l~~-~~~~~~~~~Q~~~~~~~~~~~~~li~~~TG~GKT~~~~~~~l~~~~~~~~----~~~~~viii 75 (203)
T cd00268 1 FEELGLSPELLRGIYA-LGFEKPTPIQARAIPPLLSGRDVIGQAQTGSGKTAAFLIPILEKLDPSPK----KDGPQALIL 75 (203)
T ss_pred CCcCCCCHHHHHHHHH-cCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHHHHhhcc----cCCceEEEE
Confidence 7899999999999965 79999999999999999999999999999999999999999998877321 246789999
Q ss_pred cCcHHHHHHHHHHHHHHHhhcCCcceEEEeCCCchHHHHHHHcCCCCEEEeCChHHHHHHhhcCCCcCCceeEEEEcchh
Q 010357 100 VPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEAD 179 (512)
Q Consensus 100 ~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lV~DEah 179 (512)
+|+++|+.|+...+..+....+ ..+..+.++.........+..+++|+|+||+.+...+.+. ...+.+++++|+||+|
T Consensus 76 ~p~~~L~~q~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~-~~~~~~l~~lIvDE~h 153 (203)
T cd00268 76 APTRELALQIAEVARKLGKHTN-LKVVVIYGGTSIDKQIRKLKRGPHIVVATPGRLLDLLERG-KLDLSKVKYLVLDEAD 153 (203)
T ss_pred cCCHHHHHHHHHHHHHHhccCC-ceEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcC-CCChhhCCEEEEeChH
Confidence 9999999999999999876533 5556677777776666666668899999999999988763 4667789999999999
Q ss_pred HHHhcCchHHHHHHHHHhccCCCCCCCCCCcccccceeEEEEEEecchhhHHHHHhhcCCCeEE
Q 010357 180 RILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLI 243 (512)
Q Consensus 180 ~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~ 243 (512)
++.+.+++..+..+...++. ..+++++|||+++....+...++.++..+
T Consensus 154 ~~~~~~~~~~~~~~~~~l~~---------------~~~~~~~SAT~~~~~~~~~~~~~~~~~~~ 202 (203)
T cd00268 154 RMLDMGFEDQIREILKLLPK---------------DRQTLLFSATMPKEVRDLARKFLRNPVRI 202 (203)
T ss_pred HhhccChHHHHHHHHHhCCc---------------ccEEEEEeccCCHHHHHHHHHHCCCCEEe
Confidence 99988899999999988765 88999999999999888888888877764
No 93
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.97 E-value=1.9e-28 Score=248.79 Aligned_cols=372 Identities=18% Similarity=0.186 Sum_probs=243.9
Q ss_pred hcCCCCCcHHHHHHHHHhhcCCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHH
Q 010357 36 RLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHK 115 (512)
Q Consensus 36 ~~~~~~~~~~Q~~~~~~~~~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~ 115 (512)
.+|.. |++.|.-.--.+.+| -|..++||+|||++|.+|++..... +..++|++||+.||.|.++++..
T Consensus 78 ~lg~~-~ydvQliGg~~Lh~G--~Iaem~TGeGKTL~a~Lpa~~~al~---------G~~V~VvTpn~yLA~qd~e~m~~ 145 (896)
T PRK13104 78 TLGLR-HFDVQLIGGMVLHEG--NIAEMRTGEGKTLVATLPAYLNAIS---------GRGVHIVTVNDYLAKRDSQWMKP 145 (896)
T ss_pred HcCCC-cchHHHhhhhhhccC--ccccccCCCCchHHHHHHHHHHHhc---------CCCEEEEcCCHHHHHHHHHHHHH
Confidence 34665 888888777666666 5889999999999999999977655 55699999999999999999999
Q ss_pred HHhhcCCcceEEEeCCCchHHHHHHHcCCCCEEEeCChHH-HHHHhhcCCCcC-----CceeEEEEcchhHHHhcC----
Q 010357 116 LLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRL-LDHLKHTSSFLH-----TNLRWIIFDEADRILELG---- 185 (512)
Q Consensus 116 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~Iiv~Tp~~l-~~~l~~~~~~~~-----~~~~~lV~DEah~l~~~~---- 185 (512)
+...++ +.++++.+|.......... .+||+++||++| ++++...-.+.+ ..+.++|+||||+++=..
T Consensus 146 l~~~lG-Ltv~~i~gg~~~~~r~~~y--~~dIvygT~grlgfDyLrd~~~~~~~~~v~r~l~~~IvDEaDsiLIDeArtP 222 (896)
T PRK13104 146 IYEFLG-LTVGVIYPDMSHKEKQEAY--KADIVYGTNNEYGFDYLRDNMAFSLTDKVQRELNFAIVDEVDSILIDEARTP 222 (896)
T ss_pred HhcccC-ceEEEEeCCCCHHHHHHHh--CCCEEEECChhhhHHHHhcCCccchHhhhccccceEEeccHhhhhhhccCCc
Confidence 998877 6677788887766554443 689999999999 888876434433 578999999999975321
Q ss_pred ------------chHHHHHHHHHhccCCCCCCCCCCcccccceeEEEEEEecchhhHHHH--------------------
Q 010357 186 ------------FGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLA-------------------- 233 (512)
Q Consensus 186 ------------~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~-------------------- 233 (512)
.+..+..+...+....... ....-....+.+.+.+|-.-......++
T Consensus 223 LIISg~~~~~~~~y~~~~~~v~~l~~~~~~~-~~~dy~idek~~~v~Lte~G~~~~e~~~~~~~il~~~~~l~~~~~~~~ 301 (896)
T PRK13104 223 LIISGAAEDSSELYIKINSLIPQLKKQEEEG-DEGDYTIDEKQKQAHLTDAGHLHIEELLTKAKLLDPGESLYHASNIML 301 (896)
T ss_pred eeeeCCCccchHHHHHHHHHHHHHHhccccC-CCCCEEEEcCCCceEEchHHHHHHHHHHHhCCccCCcccccCchhhhH
Confidence 2334444444443310000 0000000112222333332111111111
Q ss_pred -----------HhhcCCCeEEccC------CCcCCCCccccccCCcccchhhhccCCCcccccccc--------------
Q 010357 234 -----------KISLETPVLIGLD------EKKLPEDKSHVRFGSLESDVKEEVEHPSTTMRSTTE-------------- 282 (512)
Q Consensus 234 -----------~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------- 282 (512)
..+..+..++..+ +...........|.+.........+...........
T Consensus 302 ~~~i~~aL~A~~lf~~d~dYiV~dg~V~iVDe~TGR~m~grr~s~GLHQaiEaKE~v~i~~e~~t~AsIT~Qn~Fr~Y~k 381 (896)
T PRK13104 302 MHHVNAALKAHAMFHRDIDYIVKDNQVVIVDEHTGRTMPGRRWSEGLHQAVEAKEGVPIQNENQTLASITFQNFFRMYNK 381 (896)
T ss_pred HHHHHHHHHHHHHhcCCCceEEECCEEEEEECCCCCcCCCCCcChHHHHHHHHHcCCCCCCCceeeeeehHHHHHHhcch
Confidence 0111111111111 112222333333322222222222221111110000
Q ss_pred ----------------------cccccc------ceeeeEEEecCCchHHHHHHHHHhhhccccCceEEEEeecchhhhh
Q 010357 283 ----------------------DFKLPA------QLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDF 334 (512)
Q Consensus 283 ----------------------~~~~~~------~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~lvf~~~~~~~~~ 334 (512)
...+|. .-....+.....+|+.++.+.+.... ..+.|+||||+|++.++.
T Consensus 382 LsGMTGTa~te~~Ef~~iY~l~Vv~IPtnkp~~R~d~~d~v~~t~~~k~~av~~~i~~~~--~~g~PVLVgt~Sie~sE~ 459 (896)
T PRK13104 382 LSGMTGTADTEAYEFQQIYNLEVVVIPTNRSMIRKDEADLVYLTQADKFQAIIEDVRECG--VRKQPVLVGTVSIEASEF 459 (896)
T ss_pred hccCCCCChhHHHHHHHHhCCCEEECCCCCCcceecCCCeEEcCHHHHHHHHHHHHHHHH--hCCCCEEEEeCcHHHHHH
Confidence 000111 11112333344678888888887763 567899999999999999
Q ss_pred HHHhhhhhcCCCCCCChhHHHhhhhccceeeecCCCCHHHHHHHHHhhhcCCCcEEEeecccccCCCCCC----------
Q 010357 335 HYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPK---------- 404 (512)
Q Consensus 335 l~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~l~g~~~~~~r~~~~~~f~~~~~~vLvaT~~~~~Gldip~---------- 404 (512)
++.+|.+. ++++..+|+.+...++..+.+.|+.| .|+|||+++++|+|+-=
T Consensus 460 ls~~L~~~-----------------gi~h~vLnak~~q~Ea~iia~Ag~~G--~VtIATNmAGRGtDI~Lggn~~~~~~~ 520 (896)
T PRK13104 460 LSQLLKKE-----------------NIKHQVLNAKFHEKEAQIIAEAGRPG--AVTIATNMAGRGTDIVLGGSLAADLAN 520 (896)
T ss_pred HHHHHHHc-----------------CCCeEeecCCCChHHHHHHHhCCCCC--cEEEeccCccCCcceecCCchhhhhhc
Confidence 99999998 88999999999999999999999999 59999999999999851
Q ss_pred ----------------------------CcEEEEeCCCCChhHHHHhhhhcccCCCCccEEEecCccc
Q 010357 405 ----------------------------VKCIIQYDSAGEATEYVHRVGRTARLGERGDSLLFLQPVE 444 (512)
Q Consensus 405 ----------------------------~~~VI~~~~p~s~~~~~Q~~GRagR~g~~g~~~~~~~~~~ 444 (512)
-=+||-...+.|..---|-.|||||.|.+|.+..|++-+|
T Consensus 521 ~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerhesrRID~QLrGRaGRQGDPGss~f~lSleD 588 (896)
T PRK13104 521 LPADASEQEKEAVKKEWQKRHDEVIAAGGLRIIGSERHESRRIDNQLRGRAGRQGDPGSSRFYLSLED 588 (896)
T ss_pred cccchhhHHHHHHHHHhhhhhhHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEEEEcCc
Confidence 1278888889999989999999999999999999998776
No 94
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.97 E-value=1.2e-29 Score=270.55 Aligned_cols=358 Identities=19% Similarity=0.203 Sum_probs=207.7
Q ss_pred CCcHHHHHHHHHhh----c-CCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHH
Q 010357 41 APTKVQAQAIPVIL----S-GRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHK 115 (512)
Q Consensus 41 ~~~~~Q~~~~~~~~----~-~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~ 115 (512)
.+|+||.+|+..+. + .+++++++|||||||++++..+...+.. ....++||++|+++|+.|+.+.|..
T Consensus 413 ~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~tai~li~~L~~~-------~~~~rVLfLvDR~~L~~Qa~~~F~~ 485 (1123)
T PRK11448 413 GLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRTAIALMYRLLKA-------KRFRRILFLVDRSALGEQAEDAFKD 485 (1123)
T ss_pred CCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHHHHHHHHHHhc-------CccCeEEEEecHHHHHHHHHHHHHh
Confidence 48999999998765 2 3679999999999999976665554433 2246799999999999999999988
Q ss_pred HHhhcCCcceEEEeCCCchHHHHHH-HcCCCCEEEeCChHHHHHHhhc----CCCcCCceeEEEEcchhHHHhc------
Q 010357 116 LLHRFHWIVPGYVMGGENRSKEKAR-LRKGISILVATPGRLLDHLKHT----SSFLHTNLRWIIFDEADRILEL------ 184 (512)
Q Consensus 116 ~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~Iiv~Tp~~l~~~l~~~----~~~~~~~~~~lV~DEah~l~~~------ 184 (512)
...... ......++ ....... .....+|+|+|++++.+.+... ..+.+..+++||+||||+....
T Consensus 486 ~~~~~~-~~~~~i~~---i~~L~~~~~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~fdlIIiDEaHRs~~~d~~~~~ 561 (1123)
T PRK11448 486 TKIEGD-QTFASIYD---IKGLEDKFPEDETKVHVATVQGMVKRILYSDDPMDKPPVDQYDCIIVDEAHRGYTLDKEMSE 561 (1123)
T ss_pred cccccc-cchhhhhc---hhhhhhhcccCCCCEEEEEHHHHHHhhhccccccccCCCCcccEEEEECCCCCCcccccccc
Confidence 632111 00000111 1111111 1234689999999998765321 1234568899999999984210
Q ss_pred ---------CchHHHHHHHHHhccCCCCCCCCCCcccccceeEEEEEEecchhhHHHHHhhcCCCeE-Ecc----CCCcC
Q 010357 185 ---------GFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVL-IGL----DEKKL 250 (512)
Q Consensus 185 ---------~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~-~~~----~~~~~ 250 (512)
.+......++..+ +...|++||||...... +++.|.. +.+ ....+
T Consensus 562 ~~~~~~~~~~~~~~yr~iL~yF-----------------dA~~IGLTATP~r~t~~----~FG~pv~~Ysl~eAI~DG~L 620 (1123)
T PRK11448 562 GELQFRDQLDYVSKYRRVLDYF-----------------DAVKIGLTATPALHTTE----IFGEPVYTYSYREAVIDGYL 620 (1123)
T ss_pred chhccchhhhHHHHHHHHHhhc-----------------CccEEEEecCCccchhH----HhCCeeEEeeHHHHHhcCCc
Confidence 0134566666654 45679999999743221 1223321 111 11111
Q ss_pred CCCccccccCC------cccchhhhccCCCccccccccccccccceeee---E-EEecCCchHHHHHHHHHhhhccccCc
Q 010357 251 PEDKSHVRFGS------LESDVKEEVEHPSTTMRSTTEDFKLPAQLVQR---Y-VKVPCGSRLAVLLSILKHLFDTEVSQ 320 (512)
Q Consensus 251 ~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~k~~~l~~~l~~~~~~~~~~ 320 (512)
......+.+.. +............. ..........+..+... + ..+-.......++..+.+.+....++
T Consensus 621 v~~~~p~~i~t~~~~~gi~~~~~e~~~~~~~-~~~~i~~~~l~d~~~~~~~~~~~~vi~~~~~~~i~~~l~~~l~~~~~~ 699 (1123)
T PRK11448 621 IDHEPPIRIETRLSQEGIHFEKGEEVEVINT-QTGEIDLATLEDEVDFEVEDFNRRVITESFNRVVCEELAKYLDPTGEG 699 (1123)
T ss_pred ccCcCCEEEEEEeccccccccccchhhhcch-hhhhhhhccCcHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHhccCCC
Confidence 11100000000 00000000000000 00000000000000000 0 00001112223333333333333458
Q ss_pred eEEEEeecchhhhhHHHhhhhhcCCCCCCChhHHHhhhhccceeeecCCCCHHHHHHHHHhhhcCCC-cEEEeecccccC
Q 010357 321 KLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKK-ALLLSTDVAARG 399 (512)
Q Consensus 321 ~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~l~g~~~~~~r~~~~~~f~~~~~-~vLvaT~~~~~G 399 (512)
++||||.++++++.+++.|.+....... ...+..+..++|+++ ++..++++|+++.. .|+|+++++.+|
T Consensus 700 KtiIF~~s~~HA~~i~~~L~~~f~~~~~--------~~~~~~v~~itg~~~--~~~~li~~Fk~~~~p~IlVsvdmL~TG 769 (1123)
T PRK11448 700 KTLIFAATDAHADMVVRLLKEAFKKKYG--------QVEDDAVIKITGSID--KPDQLIRRFKNERLPNIVVTVDLLTTG 769 (1123)
T ss_pred cEEEEEcCHHHHHHHHHHHHHHHHhhcC--------CcCccceEEEeCCcc--chHHHHHHHhCCCCCeEEEEecccccC
Confidence 9999999999999999998764211000 000224566888875 56789999999876 689999999999
Q ss_pred CCCCCCcEEEEeCCCCChhHHHHhhhhcccCCC--CccEEEecC
Q 010357 400 LDFPKVKCIIQYDSAGEATEYVHRVGRTARLGE--RGDSLLFLQ 441 (512)
Q Consensus 400 ldip~~~~VI~~~~p~s~~~~~Q~~GRagR~g~--~g~~~~~~~ 441 (512)
+|+|.+++||++.++.|...|+||+||+.|... ....+.+++
T Consensus 770 ~DvP~v~~vVf~rpvkS~~lf~QmIGRgtR~~~~~~K~~f~I~D 813 (1123)
T PRK11448 770 IDVPSICNLVFLRRVRSRILYEQMLGRATRLCPEIGKTHFRIFD 813 (1123)
T ss_pred CCcccccEEEEecCCCCHHHHHHHHhhhccCCccCCCceEEEEe
Confidence 999999999999999999999999999999744 234444444
No 95
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.96 E-value=6.7e-28 Score=244.63 Aligned_cols=337 Identities=18% Similarity=0.207 Sum_probs=240.2
Q ss_pred HhcCCCCCcHHHHHHHHHhhcCCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcHHHHHHHHHHHH
Q 010357 35 ERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILH 114 (512)
Q Consensus 35 ~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~ 114 (512)
..+|+. |++.|.-..-.+.+| -+..++||+|||+++.+|++-.... +..+-+++||..||.|.++.+.
T Consensus 76 R~lg~~-~~dvQlig~l~L~~G--~Iaem~TGeGKTLva~lpa~l~aL~---------G~~V~IvTpn~yLA~rd~e~~~ 143 (830)
T PRK12904 76 RVLGMR-HFDVQLIGGMVLHEG--KIAEMKTGEGKTLVATLPAYLNALT---------GKGVHVVTVNDYLAKRDAEWMG 143 (830)
T ss_pred HHhCCC-CCccHHHhhHHhcCC--chhhhhcCCCcHHHHHHHHHHHHHc---------CCCEEEEecCHHHHHHHHHHHH
Confidence 345775 999999887777677 4899999999999999999643333 4457899999999999999999
Q ss_pred HHHhhcCCcceEEEeCCCchHHHHHHHcCCCCEEEeCChHH-HHHHhhcCC-----CcCCceeEEEEcchhHHHhcC---
Q 010357 115 KLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRL-LDHLKHTSS-----FLHTNLRWIIFDEADRILELG--- 185 (512)
Q Consensus 115 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~Iiv~Tp~~l-~~~l~~~~~-----~~~~~~~~lV~DEah~l~~~~--- 185 (512)
.+...++ +.++++.++.+........ .++|+++||..| ++++...-. ..+..+.++|+||||+++=..
T Consensus 144 ~l~~~LG-lsv~~i~~~~~~~er~~~y--~~dI~ygT~~elgfDyLrd~~~~~~~~~~~r~~~~aIvDEaDsiLIDeArt 220 (830)
T PRK12904 144 PLYEFLG-LSVGVILSGMSPEERREAY--AADITYGTNNEFGFDYLRDNMVFSLEERVQRGLNYAIVDEVDSILIDEART 220 (830)
T ss_pred HHHhhcC-CeEEEEcCCCCHHHHHHhc--CCCeEEECCcchhhhhhhcccccchhhhcccccceEEEechhhheeccCCC
Confidence 9998877 5667777777766555543 489999999999 888865332 245678999999999853210
Q ss_pred -------------chHHHHHHHHHhccCC---------------------------------------------------
Q 010357 186 -------------FGKEIEEILDILGSRN--------------------------------------------------- 201 (512)
Q Consensus 186 -------------~~~~~~~i~~~~~~~~--------------------------------------------------- 201 (512)
.+..+..+...+....
T Consensus 221 pLiiSg~~~~~~~~y~~~~~~v~~l~~~~dy~vde~~~~v~lte~G~~~~e~~~~~~~ly~~~~~~~~~~i~~AL~A~~l 300 (830)
T PRK12904 221 PLIISGPAEDSSELYKRANKIVPTLEKEGDYTVDEKSRTVGLTEEGIEKAEKLLGIENLYDPENIALVHHLNQALRAHEL 300 (830)
T ss_pred ceeeECCCCcccHHHHHHHHHHHhcCCCCCeEEEcCCCeeeECHHHHHHHHHHhCCccccChhhhHHHHHHHHHHHHHHH
Confidence 1122222222221100
Q ss_pred --------------------CCCC--CCCCc--------------cc---------------ccceeEEEEEEecchhhH
Q 010357 202 --------------------IGSI--GEGNE--------------VS---------------NVKRQNLLLSATLNEKVN 230 (512)
Q Consensus 202 --------------------~~~~--~~~~~--------------~~---------------~~~~~~i~~SAT~~~~~~ 230 (512)
.+.. +..++ .. ..-.++.+||+|......
T Consensus 301 ~~~d~dYiV~dg~V~ivDe~TGR~~~gr~ws~GLHQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te~~ 380 (830)
T PRK12904 301 FKRDVDYIVKDGEVVIVDEFTGRLMPGRRYSDGLHQAIEAKEGVKIQNENQTLASITFQNYFRMYEKLAGMTGTADTEAE 380 (830)
T ss_pred HhcCCcEEEECCEEEEEECCCCccCCCCccchHHHHHHHHhcCCCCCCCceeeeeeeHHHHHHhcchhcccCCCcHHHHH
Confidence 0000 00000 00 011146677777665544
Q ss_pred HHHHhhcCCCeEEccCCCcCCCCccccccCCcccchhhhccCCCccccccccccccccceeeeEEEecCCchHHHHHHHH
Q 010357 231 HLAKISLETPVLIGLDEKKLPEDKSHVRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCGSRLAVLLSIL 310 (512)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l 310 (512)
.+...+.-+...+.. ..+ ..+.-....+.....+|...+...+
T Consensus 381 E~~~iY~l~vv~IPt-nkp------------------------------------~~r~d~~d~i~~t~~~K~~aI~~~I 423 (830)
T PRK12904 381 EFREIYNLDVVVIPT-NRP------------------------------------MIRIDHPDLIYKTEKEKFDAVVEDI 423 (830)
T ss_pred HHHHHhCCCEEEcCC-CCC------------------------------------eeeeeCCCeEEECHHHHHHHHHHHH
Confidence 455444333332211 100 0111112334445667889999888
Q ss_pred HhhhccccCceEEEEeecchhhhhHHHhhhhhcCCCCCCChhHHHhhhhccceeeecCCCCHHHHHHHHHhhhcCCCcEE
Q 010357 311 KHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALL 390 (512)
Q Consensus 311 ~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~l~g~~~~~~r~~~~~~f~~~~~~vL 390 (512)
.... ..+.++||||+++..++.++..|... ++++..+|+. ..+|+..+..|..+...|+
T Consensus 424 ~~~~--~~grpVLIft~Si~~se~Ls~~L~~~-----------------gi~~~vLnak--q~eREa~Iia~Ag~~g~Vt 482 (830)
T PRK12904 424 KERH--KKGQPVLVGTVSIEKSELLSKLLKKA-----------------GIPHNVLNAK--NHEREAEIIAQAGRPGAVT 482 (830)
T ss_pred HHHH--hcCCCEEEEeCcHHHHHHHHHHHHHC-----------------CCceEeccCc--hHHHHHHHHHhcCCCceEE
Confidence 7653 45689999999999999999999988 8889999996 7899999999999999999
Q ss_pred EeecccccCCCCCCC--------------------------------------cEEEEeCCCCChhHHHHhhhhcccCCC
Q 010357 391 LSTDVAARGLDFPKV--------------------------------------KCIIQYDSAGEATEYVHRVGRTARLGE 432 (512)
Q Consensus 391 vaT~~~~~Gldip~~--------------------------------------~~VI~~~~p~s~~~~~Q~~GRagR~g~ 432 (512)
|||++++||+|++-- =+||-...+.|..---|..||+||.|.
T Consensus 483 IATNmAGRGtDI~LgGn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~GGLhVigTerhesrRid~QlrGRagRQGd 562 (830)
T PRK12904 483 IATNMAGRGTDIKLGGNPEMLAAALLEEETEEQIAKIKAEWQEEHEEVLEAGGLHVIGTERHESRRIDNQLRGRSGRQGD 562 (830)
T ss_pred EecccccCCcCccCCCchhhhhhhhhhhhhhHHHHHHHHHHhhhhhhHHHcCCCEEEecccCchHHHHHHhhcccccCCC
Confidence 999999999999632 278888899999999999999999999
Q ss_pred CccEEEecCccc
Q 010357 433 RGDSLLFLQPVE 444 (512)
Q Consensus 433 ~g~~~~~~~~~~ 444 (512)
+|.+..|++-+|
T Consensus 563 pGss~f~lSleD 574 (830)
T PRK12904 563 PGSSRFYLSLED 574 (830)
T ss_pred CCceeEEEEcCc
Confidence 999999999776
No 96
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.96 E-value=1.6e-27 Score=210.88 Aligned_cols=304 Identities=21% Similarity=0.285 Sum_probs=216.1
Q ss_pred CCcHHHHHHHHHhh----cCCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHH
Q 010357 41 APTKVQAQAIPVIL----SGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKL 116 (512)
Q Consensus 41 ~~~~~Q~~~~~~~~----~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 116 (512)
.+++.|+.+...+. +.++.+++|-||+|||.+....+...+.+ |.++.+.+|....+.+.+..++..
T Consensus 97 ~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEMif~~i~~al~~---------G~~vciASPRvDVclEl~~Rlk~a 167 (441)
T COG4098 97 TLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEMIFQGIEQALNQ---------GGRVCIASPRVDVCLELYPRLKQA 167 (441)
T ss_pred ccChhHHHHHHHHHHHHHhcCcEEEEEecCCCchhhhHHHHHHHHhc---------CCeEEEecCcccchHHHHHHHHHh
Confidence 58999998876654 56899999999999999988888887766 899999999999999999999888
Q ss_pred HhhcCCcceEEEeCCCchHHHHHHHcCCCCEEEeCChHHHHHHhhcCCCcCCceeEEEEcchhHHHhcCchHHHHHHHHH
Q 010357 117 LHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDI 196 (512)
Q Consensus 117 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lV~DEah~l~~~~~~~~~~~i~~~ 196 (512)
+.. ..+..++|+.+..- ..+++|+|...|++.-. .++++|+||+|..--. -...+....+.
T Consensus 168 F~~---~~I~~Lyg~S~~~f-------r~plvVaTtHQLlrFk~--------aFD~liIDEVDAFP~~-~d~~L~~Av~~ 228 (441)
T COG4098 168 FSN---CDIDLLYGDSDSYF-------RAPLVVATTHQLLRFKQ--------AFDLLIIDEVDAFPFS-DDQSLQYAVKK 228 (441)
T ss_pred hcc---CCeeeEecCCchhc-------cccEEEEehHHHHHHHh--------hccEEEEecccccccc-CCHHHHHHHHH
Confidence 653 45566776654322 14799999999988654 5789999999974222 22333333333
Q ss_pred hccCCCCCCCCCCcccccceeEEEEEEecchhhHHHHHhhcCCCeEEccCCCcCCCCccccccCCcccchhhhccCCCcc
Q 010357 197 LGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLPEDKSHVRFGSLESDVKEEVEHPSTT 276 (512)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (512)
..+. ....|++|||+++..+.-.... +-..+.+.......
T Consensus 229 ark~--------------~g~~IylTATp~k~l~r~~~~g--~~~~~klp~RfH~~------------------------ 268 (441)
T COG4098 229 ARKK--------------EGATIYLTATPTKKLERKILKG--NLRILKLPARFHGK------------------------ 268 (441)
T ss_pred hhcc--------------cCceEEEecCChHHHHHHhhhC--CeeEeecchhhcCC------------------------
Confidence 3322 5678999999987655433321 11122222111000
Q ss_pred ccccccccccccceeeeEEEecCC------chH-HHHHHHHHhhhccccCceEEEEeecchhhhhHHHhhhhhcCCCCCC
Q 010357 277 MRSTTEDFKLPAQLVQRYVKVPCG------SRL-AVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQ 349 (512)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~------~k~-~~l~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~ 349 (512)
.-....+.....- .|+ ..+...+++. ...+.+++||.++.+..+.++..|+...
T Consensus 269 -----------pLpvPkf~w~~~~~k~l~r~kl~~kl~~~lekq--~~~~~P~liF~p~I~~~eq~a~~lk~~~------ 329 (441)
T COG4098 269 -----------PLPVPKFVWIGNWNKKLQRNKLPLKLKRWLEKQ--RKTGRPVLIFFPEIETMEQVAAALKKKL------ 329 (441)
T ss_pred -----------CCCCCceEEeccHHHHhhhccCCHHHHHHHHHH--HhcCCcEEEEecchHHHHHHHHHHHhhC------
Confidence 0011122222211 122 2566667665 3456899999999999999999996652
Q ss_pred ChhHHHhhhhccceeeecCCCCHHHHHHHHHhhhcCCCcEEEeecccccCCCCCCCcEEEEeCCC--CChhHHHHhhhhc
Q 010357 350 PDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSA--GEATEYVHRVGRT 427 (512)
Q Consensus 350 ~~~~~~~~~~~~~v~~l~g~~~~~~r~~~~~~f~~~~~~vLvaT~~~~~Gldip~~~~VI~~~~p--~s~~~~~Q~~GRa 427 (512)
+...+..+|+. ...|.+..+.|++|+..+||+|.++++|+.+|++++.|.-.-. .+...++|.+||+
T Consensus 330 ---------~~~~i~~Vhs~--d~~R~EkV~~fR~G~~~lLiTTTILERGVTfp~vdV~Vlgaeh~vfTesaLVQIaGRv 398 (441)
T COG4098 330 ---------PKETIASVHSE--DQHRKEKVEAFRDGKITLLITTTILERGVTFPNVDVFVLGAEHRVFTESALVQIAGRV 398 (441)
T ss_pred ---------Cccceeeeecc--CccHHHHHHHHHcCceEEEEEeehhhcccccccceEEEecCCcccccHHHHHHHhhhc
Confidence 24566778887 7789999999999999999999999999999999988865543 6889999999999
Q ss_pred ccCCC--CccEEEecCc
Q 010357 428 ARLGE--RGDSLLFLQP 442 (512)
Q Consensus 428 gR~g~--~g~~~~~~~~ 442 (512)
||.-. .|.+..|...
T Consensus 399 GRs~~~PtGdv~FFH~G 415 (441)
T COG4098 399 GRSLERPTGDVLFFHYG 415 (441)
T ss_pred cCCCcCCCCcEEEEecc
Confidence 99643 3666555443
No 97
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.96 E-value=4.9e-28 Score=244.60 Aligned_cols=341 Identities=17% Similarity=0.213 Sum_probs=237.2
Q ss_pred HHHHHhcCCCCCcHHHHHHHHHhhcCCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcHHHHHHHH
Q 010357 31 DQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVY 110 (512)
Q Consensus 31 ~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~ 110 (512)
.+....+|+. |++.|.-+.-.+.+|+ |....||+|||+++.+|++..... |..+-+++|+--||.|-+
T Consensus 71 Ea~~R~~g~~-~~dvQlig~l~l~~G~--iaEm~TGEGKTLvA~l~a~l~al~---------G~~v~vvT~neyLA~Rd~ 138 (796)
T PRK12906 71 EGAKRVLGLR-PFDVQIIGGIVLHEGN--IAEMKTGEGKTLTATLPVYLNALT---------GKGVHVVTVNEYLSSRDA 138 (796)
T ss_pred HHHHHHhCCC-CchhHHHHHHHHhcCC--cccccCCCCCcHHHHHHHHHHHHc---------CCCeEEEeccHHHHHhhH
Confidence 3344455775 9999998877777774 999999999999999999888877 888999999999999999
Q ss_pred HHHHHHHhhcCCcceEEEeCCCchHHHHHHHcCCCCEEEeCChHH-HHHHhhc-----CCCcCCceeEEEEcchhHHHhc
Q 010357 111 EILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRL-LDHLKHT-----SSFLHTNLRWIIFDEADRILEL 184 (512)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~Iiv~Tp~~l-~~~l~~~-----~~~~~~~~~~lV~DEah~l~~~ 184 (512)
+.+..+...+| +.++...++......... ..+||+++|...| ++.|... .......+.+.|+||+|.++=.
T Consensus 139 e~~~~~~~~LG-l~vg~i~~~~~~~~r~~~--y~~dI~Y~t~~e~gfDyLRD~m~~~~~~~v~r~~~~aIvDEvDSiLiD 215 (796)
T PRK12906 139 TEMGELYRWLG-LTVGLNLNSMSPDEKRAA--YNCDITYSTNSELGFDYLRDNMVVYKEQMVQRPLNYAIVDEVDSILID 215 (796)
T ss_pred HHHHHHHHhcC-CeEEEeCCCCCHHHHHHH--hcCCCeecCCccccccchhhccccchhhhhccCcceeeeccchheeec
Confidence 99999999888 555666655444433322 3679999999766 3333321 1123456789999999984321
Q ss_pred C----------------chHHHHHHHHHhccCC------------------CCC--C---------------C-------
Q 010357 185 G----------------FGKEIEEILDILGSRN------------------IGS--I---------------G------- 206 (512)
Q Consensus 185 ~----------------~~~~~~~i~~~~~~~~------------------~~~--~---------------~------- 206 (512)
. .+..+..+...+.... ... . .
T Consensus 216 eartPLiisg~~~~~~~~y~~~~~~v~~l~~~~~~~~~~~~~~~dy~id~~~k~v~lte~G~~~~e~~~~i~~l~~~~~~ 295 (796)
T PRK12906 216 EARTPLIISGQAEKATDLYIRADRFVKTLIKDEAEDGDDDEDTGDYKIDEKTKTISLTEQGIRKAEKLFGLDNLYDSENT 295 (796)
T ss_pred cCCCceecCCCCCcchHHHHHHHHHHHHHHhhhhccccccCCCCceEEEcccCceeecHHHHHHHHHHcCCccccCchhh
Confidence 0 1112222222211100 000 0 0
Q ss_pred ------------------------------------------CCCc--------------cc---------------ccc
Q 010357 207 ------------------------------------------EGNE--------------VS---------------NVK 215 (512)
Q Consensus 207 ------------------------------------------~~~~--------------~~---------------~~~ 215 (512)
..++ .. ..-
T Consensus 296 ~~~~~i~~Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~ws~GLHQaieaKe~v~i~~e~~t~a~It~qnfFr~Y 375 (796)
T PRK12906 296 ALAHHIDQALRANYIMLKDIDYVVQDGEVLIVDEFTGRVMEGRRYSDGLHQAIEAKEGVKIQEENQTLATITYQNFFRMY 375 (796)
T ss_pred hHHHHHHHHHHHHHHHhcCCcEEEECCEEEEEeCCCCCcCCCCccChHHHHHHHHhcCCCcCCCceeeeeehHHHHHHhc
Confidence 0000 00 001
Q ss_pred eeEEEEEEecchhhHHHHHhhcCCCeEEccCCCcCCCCccccccCCcccchhhhccCCCccccccccccccccceeeeEE
Q 010357 216 RQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLPEDKSHVRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYV 295 (512)
Q Consensus 216 ~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (512)
.++.+||+|.......+.+.+.-+...+ +.. . .....-....+
T Consensus 376 ~kl~GmTGTa~~e~~Ef~~iY~l~vv~I--Ptn-----k------------------------------p~~r~d~~d~i 418 (796)
T PRK12906 376 KKLSGMTGTAKTEEEEFREIYNMEVITI--PTN-----R------------------------------PVIRKDSPDLL 418 (796)
T ss_pred chhhccCCCCHHHHHHHHHHhCCCEEEc--CCC-----C------------------------------CeeeeeCCCeE
Confidence 1455666666544444444332222221 111 0 00111112233
Q ss_pred EecCCchHHHHHHHHHhhhccccCceEEEEeecchhhhhHHHhhhhhcCCCCCCChhHHHhhhhccceeeecCCCCHHHH
Q 010357 296 KVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDR 375 (512)
Q Consensus 296 ~~~~~~k~~~l~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~l~g~~~~~~r 375 (512)
......|...+.+.+.... ..+.++||||+++..++.++..|.+. ++++..+|+++...++
T Consensus 419 ~~t~~~K~~al~~~i~~~~--~~g~pvLI~t~si~~se~ls~~L~~~-----------------gi~~~~Lna~~~~~Ea 479 (796)
T PRK12906 419 YPTLDSKFNAVVKEIKERH--AKGQPVLVGTVAIESSERLSHLLDEA-----------------GIPHAVLNAKNHAKEA 479 (796)
T ss_pred EcCHHHHHHHHHHHHHHHH--hCCCCEEEEeCcHHHHHHHHHHHHHC-----------------CCCeeEecCCcHHHHH
Confidence 3445678888888887653 45789999999999999999999998 8889999999998888
Q ss_pred HHHHHhhhcCCCcEEEeecccccCCCCC---CCc-----EEEEeCCCCChhHHHHhhhhcccCCCCccEEEecCccc
Q 010357 376 RTTFGAFKTEKKALLLSTDVAARGLDFP---KVK-----CIIQYDSAGEATEYVHRVGRTARLGERGDSLLFLQPVE 444 (512)
Q Consensus 376 ~~~~~~f~~~~~~vLvaT~~~~~Gldip---~~~-----~VI~~~~p~s~~~~~Q~~GRagR~g~~g~~~~~~~~~~ 444 (512)
..+.+.++.|. |+|||++++||+|++ ++. +||+++.|.|...|.|+.||+||.|.+|.+..|++.+|
T Consensus 480 ~ii~~ag~~g~--VtIATnmAGRGtDI~l~~~V~~~GGLhVI~te~pes~ri~~Ql~GRtGRqG~~G~s~~~~sleD 554 (796)
T PRK12906 480 EIIMNAGQRGA--VTIATNMAGRGTDIKLGPGVKELGGLAVIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLED 554 (796)
T ss_pred HHHHhcCCCce--EEEEeccccCCCCCCCCcchhhhCCcEEEeeecCCcHHHHHHHhhhhccCCCCcceEEEEeccc
Confidence 99999888885 999999999999994 788 99999999999999999999999999999999999876
No 98
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=99.96 E-value=4.4e-29 Score=248.25 Aligned_cols=384 Identities=20% Similarity=0.217 Sum_probs=252.5
Q ss_pred CCHHHHHHHHHhcCCCCCcHHHHHHH--HHhhcCCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCc
Q 010357 25 LHSTLCDQLRERLGFEAPTKVQAQAI--PVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPT 102 (512)
Q Consensus 25 l~~~~~~~l~~~~~~~~~~~~Q~~~~--~~~~~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt 102 (512)
+.+.......+..|+..++.||.+|+ +.++.++|.+..+||+.|||+++.+.++....-. ...++++.|.
T Consensus 207 ~~~k~~~~~~~~kgi~~~fewq~ecls~~~~~e~~nliys~Pts~gktlvaeilml~~~l~~--------rr~~llilp~ 278 (1008)
T KOG0950|consen 207 LPTKVSHLYAKDKGILKLFEWQAECLSLPRLLERKNLIYSLPTSAGKTLVAEILMLREVLCR--------RRNVLLILPY 278 (1008)
T ss_pred CchHHHHHHHHhhhHHHHHHHHHHHhcchhhhcccceEEeCCCccchHHHHHHHHHHHHHHH--------hhceeEecce
Confidence 33444444546669999999999998 6688999999999999999999988887765542 4458999999
Q ss_pred HHHHHHHHHHHHHHHhhcCCcceEEEeCCCchHHHHHHHcCCCCEEEeCChHHHHHHhhc-CCCcCCceeEEEEcchhHH
Q 010357 103 RELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHT-SSFLHTNLRWIIFDEADRI 181 (512)
Q Consensus 103 ~~L~~q~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~-~~~~~~~~~~lV~DEah~l 181 (512)
.+.+.+-...+..++..+|..+..+. |....... .+.-.+.|+|-|+-..++... ..-.+..+++||+||.|.+
T Consensus 279 vsiv~Ek~~~l~~~~~~~G~~ve~y~-g~~~p~~~----~k~~sv~i~tiEkanslin~lie~g~~~~~g~vvVdElhmi 353 (1008)
T KOG0950|consen 279 VSIVQEKISALSPFSIDLGFPVEEYA-GRFPPEKR----RKRESVAIATIEKANSLINSLIEQGRLDFLGMVVVDELHMI 353 (1008)
T ss_pred eehhHHHHhhhhhhccccCCcchhhc-ccCCCCCc----ccceeeeeeehHhhHhHHHHHHhcCCccccCcEEEeeeeee
Confidence 99999988899999888886555444 44333322 223479999999866554431 1113347899999999999
Q ss_pred HhcCchHHHHHHHHHhccCCCCCCCCCCcccccceeEEEEEEecchhhHHHHHhhcCCCeEE-ccCCCcCCCCccccccC
Q 010357 182 LELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLI-GLDEKKLPEDKSHVRFG 260 (512)
Q Consensus 182 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 260 (512)
.+.+++..++.++..+--.+... ..|+|+||||+++.-. +..+ ++...+. ...+-++.... ..+
T Consensus 354 ~d~~rg~~lE~~l~k~~y~~~~~----------~~~iIGMSATi~N~~l-L~~~-L~A~~y~t~fRPv~L~E~i---k~G 418 (1008)
T KOG0950|consen 354 GDKGRGAILELLLAKILYENLET----------SVQIIGMSATIPNNSL-LQDW-LDAFVYTTRFRPVPLKEYI---KPG 418 (1008)
T ss_pred eccccchHHHHHHHHHHHhcccc----------ceeEeeeecccCChHH-HHHH-hhhhheecccCcccchhcc---CCC
Confidence 99999999999988765433211 3789999999987422 2222 2222111 12221111100 000
Q ss_pred CcccchhhhccCCCccccccccccccccceeeeEEEecCCchHHHHHHHHHhhhccccCceEEEEeecchhhhhHHHhhh
Q 010357 261 SLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLS 340 (512)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~ 340 (512)
..-.... .......+..-+......+..+.++.++.+.. ..+.++||||++++.|+.++..+.
T Consensus 419 ~~i~~~~---------------r~~~lr~ia~l~~~~~g~~dpD~~v~L~tet~--~e~~~~lvfc~sk~~ce~~a~~~~ 481 (1008)
T KOG0950|consen 419 SLIYESS---------------RNKVLREIANLYSSNLGDEDPDHLVGLCTETA--PEGSSVLVFCPSKKNCENVASLIA 481 (1008)
T ss_pred cccccch---------------hhHHHHHhhhhhhhhcccCCCcceeeehhhhh--hcCCeEEEEcCcccchHHHHHHHH
Confidence 0000000 00000000000000000011123333333321 235679999999999999986664
Q ss_pred hhcCCCC----------------------CCChhHHHhhhhccceeeecCCCCHHHHHHHHHhhhcCCCcEEEeeccccc
Q 010357 341 EFQWSPH----------------------SQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAAR 398 (512)
Q Consensus 341 ~~~~~~~----------------------~~~~~~~~~~~~~~~v~~l~g~~~~~~r~~~~~~f~~~~~~vLvaT~~~~~ 398 (512)
....... ...+..++. -...++.++|++++.++|+.+...|++|.+.|++||+++..
T Consensus 482 ~~vpk~~~~e~~~~~~~~~s~s~~lr~~~~~ld~Vl~~-ti~~GvAyHhaGLT~eER~~iE~afr~g~i~vl~aTSTlaa 560 (1008)
T KOG0950|consen 482 KKVPKHIKSEKRLGLWELLSISNLLRRIPGILDPVLAK-TIPYGVAYHHAGLTSEEREIIEAAFREGNIFVLVATSTLAA 560 (1008)
T ss_pred HHhhHhhhhhhhhhHHHHHHHHhHhhcCCcccchHHhe-eccccceecccccccchHHHHHHHHHhcCeEEEEecchhhc
Confidence 3221100 111222222 23678999999999999999999999999999999999999
Q ss_pred CCCCCCCcEEEEeC----CCCChhHHHHhhhhcccCCC--CccEEEecCccchhHHHHHHHc
Q 010357 399 GLDFPKVKCIIQYD----SAGEATEYVHRVGRTARLGE--RGDSLLFLQPVEMDYLQDLEKH 454 (512)
Q Consensus 399 Gldip~~~~VI~~~----~p~s~~~~~Q~~GRagR~g~--~g~~~~~~~~~~~~~~~~l~~~ 454 (512)
|+|+|...++|..- ...+...|.||+|||||+|- .|.+++++.+.+...+..+.+.
T Consensus 561 GVNLPArRVIiraP~~g~~~l~~~~YkQM~GRAGR~gidT~GdsiLI~k~~e~~~~~~lv~~ 622 (1008)
T KOG0950|consen 561 GVNLPARRVIIRAPYVGREFLTRLEYKQMVGRAGRTGIDTLGDSILIIKSSEKKRVRELVNS 622 (1008)
T ss_pred cCcCCcceeEEeCCccccchhhhhhHHhhhhhhhhcccccCcceEEEeeccchhHHHHHHhc
Confidence 99999888877533 34477899999999999985 4899999999998777777663
No 99
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.96 E-value=5.8e-27 Score=237.43 Aligned_cols=152 Identities=20% Similarity=0.308 Sum_probs=127.8
Q ss_pred cccCCCCHHHHHHHHH----hcCCCCC---cHHHHHHHHHhhcCCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCC
Q 010357 20 FSSLGLHSTLCDQLRE----RLGFEAP---TKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSS 92 (512)
Q Consensus 20 ~~~~~l~~~~~~~l~~----~~~~~~~---~~~Q~~~~~~~~~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~ 92 (512)
-+.+++.+++++.+.. .+||..| +|+|.++++.+..+++++..++||+|||++|++|++..+..
T Consensus 64 ~eafal~re~~~r~lg~~~~~~G~~~p~~~tp~qvQ~I~~i~l~~gvIAeaqTGeGKTLAf~LP~l~~aL~--------- 134 (970)
T PRK12899 64 PEAYGVVKNVCRRLAGTPVEVSGYHQQWDMVPYDVQILGAIAMHKGFITEMQTGEGKTLTAVMPLYLNALT--------- 134 (970)
T ss_pred HHHhCCCHHHHHHHhccccccccccCCCCCChHHHHHhhhhhcCCCeEEEeCCCCChHHHHHHHHHHHHhh---------
Confidence 3567889999999863 5689988 99999999999999999999999999999999999987754
Q ss_pred CceEEEEcCcHHHHHHHHHHHHHHHhhcCCcceEEEeCCCchHHHHHHHcCCCCEEEeCChHH-HHHHhhcCCCcC----
Q 010357 93 GTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRL-LDHLKHTSSFLH---- 167 (512)
Q Consensus 93 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~Iiv~Tp~~l-~~~l~~~~~~~~---- 167 (512)
+..+++++||++||.|.++.+..+...++ +.++.+.||.+........ +++|+|+||++| ++++.. +.+.+
T Consensus 135 g~~v~IVTpTrELA~Qdae~m~~L~k~lG-LsV~~i~GG~~~~eq~~~y--~~DIVygTPgRLgfDyLrd-~~~~~~~~~ 210 (970)
T PRK12899 135 GKPVHLVTVNDYLAQRDCEWVGSVLRWLG-LTTGVLVSGSPLEKRKEIY--QCDVVYGTASEFGFDYLRD-NSIATRKEE 210 (970)
T ss_pred cCCeEEEeCCHHHHHHHHHHHHHHHhhcC-CeEEEEeCCCCHHHHHHHc--CCCEEEECCChhHHHHhhC-CCCCcCHHH
Confidence 23489999999999999999999988776 6677888898887776554 589999999999 998876 33333
Q ss_pred ---CceeEEEEcchhHHHhc
Q 010357 168 ---TNLRWIIFDEADRILEL 184 (512)
Q Consensus 168 ---~~~~~lV~DEah~l~~~ 184 (512)
..+.++|+||||+++-.
T Consensus 211 ~vqr~~~~~IIDEADsmLiD 230 (970)
T PRK12899 211 QVGRGFYFAIIDEVDSILID 230 (970)
T ss_pred hhcccccEEEEechhhhhhh
Confidence 35689999999997643
No 100
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=99.96 E-value=8e-27 Score=224.77 Aligned_cols=381 Identities=18% Similarity=0.210 Sum_probs=256.4
Q ss_pred cHHHHHHHHHhhcCCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHH-HhhcC
Q 010357 43 TKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKL-LHRFH 121 (512)
Q Consensus 43 ~~~Q~~~~~~~~~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~-~~~~~ 121 (512)
+.+-.+.+..+.+++-++|.|+||||||...-..+.+.-.. ..+++-+--|.|..|.-+++....- ....|
T Consensus 53 ~~~r~~il~~ve~nqvlIviGeTGsGKSTQipQyL~eaG~~--------~~g~I~~TQPRRVAavslA~RVAeE~~~~lG 124 (674)
T KOG0922|consen 53 YKYRDQILYAVEDNQVLIVIGETGSGKSTQIPQYLAEAGFA--------SSGKIACTQPRRVAAVSLAKRVAEEMGCQLG 124 (674)
T ss_pred HHHHHHHHHHHHHCCEEEEEcCCCCCccccHhHHHHhcccc--------cCCcEEeecCchHHHHHHHHHHHHHhCCCcC
Confidence 44555677777788889999999999998866555554322 2333888889998888777665443 33333
Q ss_pred CcceEEEeCCCchHHHHHHHcCCCCEEEeCChHHHHHHhhcCCCcCCceeEEEEcchhHHHhcCchHHHHHHHHHhccCC
Q 010357 122 WIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILGSRN 201 (512)
Q Consensus 122 ~~~~~~~~~g~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lV~DEah~l~~~~~~~~~~~i~~~~~~~~ 201 (512)
..+++..--++.. .....|.++|.+.|++-+...+.+ +++++||+||||. +.-...-++..+++.-
T Consensus 125 -~~VGY~IRFed~t------s~~TrikymTDG~LLRE~l~Dp~L--skYsvIIlDEAHE-----Rsl~TDiLlGlLKki~ 190 (674)
T KOG0922|consen 125 -EEVGYTIRFEDST------SKDTRIKYMTDGMLLREILKDPLL--SKYSVIILDEAHE-----RSLHTDILLGLLKKIL 190 (674)
T ss_pred -ceeeeEEEecccC------CCceeEEEecchHHHHHHhcCCcc--ccccEEEEechhh-----hhhHHHHHHHHHHHHH
Confidence 3344443222211 123479999999999977765544 5899999999997 4433333433333321
Q ss_pred CCCCCCCCcccccceeEEEEEEecchhhHHHHHhhcCCCeEEccCCCcCCCCccccccCCcccchhhhccCCCccccccc
Q 010357 202 IGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLPEDKSHVRFGSLESDVKEEVEHPSTTMRSTT 281 (512)
Q Consensus 202 ~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (512)
.. ....++|++|||+.. +.+.+. +++..++.+.+...|
T Consensus 191 ~~---------R~~LklIimSATlda--~kfS~y-F~~a~i~~i~GR~fP------------------------------ 228 (674)
T KOG0922|consen 191 KK---------RPDLKLIIMSATLDA--EKFSEY-FNNAPILTIPGRTFP------------------------------ 228 (674)
T ss_pred hc---------CCCceEEEEeeeecH--HHHHHH-hcCCceEeecCCCCc------------------------------
Confidence 11 116899999999874 344444 444344444444322
Q ss_pred cccccccceeeeEEEecCCchHHHHHHHHHhhhccccCceEEEEeecchhhhhHHHhhhhhcCCCCCCChhHHHhhhhcc
Q 010357 282 EDFKLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRC 361 (512)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 361 (512)
+...|...+..+-+...+..+.++....+.+.+|||....++.+.+++.|.+........ .+.
T Consensus 229 --------Vei~y~~~p~~dYv~a~~~tv~~Ih~~E~~GDILvFLtGqeEIe~~~~~l~e~~~~~~~~--------~~~- 291 (674)
T KOG0922|consen 229 --------VEILYLKEPTADYVDAALITVIQIHLTEPPGDILVFLTGQEEIEAACELLRERAKSLPED--------CPE- 291 (674)
T ss_pred --------eeEEeccCCchhhHHHHHHHHHHHHccCCCCCEEEEeCCHHHHHHHHHHHHHHhhhcccc--------Ccc-
Confidence 222333344555666667777777777888999999999999999999998763221110 011
Q ss_pred ceeeecCCCCHHHHHHHHHhhhcCCCcEEEeecccccCCCCCCCcEEEEeC------------------CCCChhHHHHh
Q 010357 362 KTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYD------------------SAGEATEYVHR 423 (512)
Q Consensus 362 ~v~~l~g~~~~~~r~~~~~~f~~~~~~vLvaT~~~~~Gldip~~~~VI~~~------------------~p~s~~~~~Q~ 423 (512)
-+..+||.|+.+++.++++.-..|..+|+++|++++..+.+|++.+||+-+ .|-|-.+-.||
T Consensus 292 ~~lply~aL~~e~Q~rvF~p~p~g~RKvIlsTNIAETSlTI~GI~YVVDsG~vK~~~y~p~~g~~~L~v~~ISkasA~QR 371 (674)
T KOG0922|consen 292 LILPLYGALPSEEQSRVFDPAPPGKRKVILSTNIAETSLTIDGIRYVVDSGFVKQKKYNPRTGLDSLIVVPISKASANQR 371 (674)
T ss_pred eeeeecccCCHHHhhccccCCCCCcceEEEEcceeeeeEEecceEEEEcCCceEEEeeccccCccceeEEechHHHHhhh
Confidence 467789999999999999999999999999999999999999999999755 24578888999
Q ss_pred hhhcccCCCCccEEEecCccchhHHHHHHHc-CCCCCccChhhHhhhccccCCCCccccccCccchhhHHHHHHHHHHHH
Q 010357 424 VGRTARLGERGDSLLFLQPVEMDYLQDLEKH-GVSLTEYPLLKVLDSFPLYGQKPRVKKFLTTESHPWILSLQNALESFI 502 (512)
Q Consensus 424 ~GRagR~g~~g~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 502 (512)
.|||||. .+|.|+-+|+..+.+.+ ... --++....+...+-.+..++..+ .-..+.--.|....+..+++.+.
T Consensus 372 aGRAGRt-~pGkcyRLYte~~~~~~---~~~~~PEI~R~~Ls~~vL~Lkalgi~d--~l~F~f~d~P~~~~l~~AL~~L~ 445 (674)
T KOG0922|consen 372 AGRAGRT-GPGKCYRLYTESAYDKM---PLQTVPEIQRVNLSSAVLQLKALGIND--PLRFPFIDPPPPEALEEALEELY 445 (674)
T ss_pred cccCCCC-CCceEEEeeeHHHHhhc---ccCCCCceeeechHHHHHHHHhcCCCC--cccCCCCCCCChHHHHHHHHHHH
Confidence 9999999 58999999998775332 222 22233334444433333333221 12233334466889999999999
Q ss_pred Hhcccccc
Q 010357 503 IHEILSCS 510 (512)
Q Consensus 503 ~~~~~~~~ 510 (512)
.-+-++.+
T Consensus 446 ~lgald~~ 453 (674)
T KOG0922|consen 446 SLGALDDR 453 (674)
T ss_pred hcCcccCc
Confidence 88877654
No 101
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=99.96 E-value=3.2e-27 Score=247.37 Aligned_cols=349 Identities=17% Similarity=0.236 Sum_probs=218.0
Q ss_pred CCcHHHHHHHHHhh----cCCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHH
Q 010357 41 APTKVQAQAIPVIL----SGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKL 116 (512)
Q Consensus 41 ~~~~~Q~~~~~~~~----~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 116 (512)
.+++||.+++..+. .|.+.|++..+|.|||+.++..+....... +....+|||||. ++..+|.+++..+
T Consensus 169 ~Lr~YQleGlnWLi~l~~~g~gGILADEMGLGKTlQaIalL~~L~~~~------~~~gp~LIVvP~-SlL~nW~~Ei~kw 241 (1033)
T PLN03142 169 KMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEYR------GITGPHMVVAPK-STLGNWMNEIRRF 241 (1033)
T ss_pred chHHHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHHHHHHHHHHHHhc------CCCCCEEEEeCh-HHHHHHHHHHHHH
Confidence 58999999998764 577899999999999999876665433221 224568999998 6678899999998
Q ss_pred HhhcCCcceEEEeCCCchHHHH-HH--HcCCCCEEEeCChHHHHHHhhcCCCcCCceeEEEEcchhHHHhcCchHHHHHH
Q 010357 117 LHRFHWIVPGYVMGGENRSKEK-AR--LRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEI 193 (512)
Q Consensus 117 ~~~~~~~~~~~~~~g~~~~~~~-~~--~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lV~DEah~l~~~~~~~~~~~i 193 (512)
+.. ..+..+.|........ .. .....+|+|+|++.+.........+ .+++||+||||++.. ....+...
T Consensus 242 ~p~---l~v~~~~G~~~eR~~~~~~~~~~~~~dVvITSYe~l~~e~~~L~k~---~W~~VIvDEAHrIKN--~~Sklska 313 (1033)
T PLN03142 242 CPV---LRAVKFHGNPEERAHQREELLVAGKFDVCVTSFEMAIKEKTALKRF---SWRYIIIDEAHRIKN--ENSLLSKT 313 (1033)
T ss_pred CCC---CceEEEeCCHHHHHHHHHHHhcccCCCcceecHHHHHHHHHHhccC---CCCEEEEcCccccCC--HHHHHHHH
Confidence 642 3333344432222111 11 1245799999999987654332222 688999999999865 34455556
Q ss_pred HHHhccCCCCCCCCCCcccccceeEEEEEEecchh-hHHHHH-hhcCCCeEEccC----------C--------------
Q 010357 194 LDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEK-VNHLAK-ISLETPVLIGLD----------E-------------- 247 (512)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~-~~~~~~-~~~~~~~~~~~~----------~-------------- 247 (512)
+..+. ....+++|+||-.+ ...+.. +.+-.|..+... .
T Consensus 314 lr~L~----------------a~~RLLLTGTPlqNnl~ELwsLL~FL~P~~f~s~~~F~~~f~~~~~~~~~e~i~~L~~~ 377 (1033)
T PLN03142 314 MRLFS----------------TNYRLLITGTPLQNNLHELWALLNFLLPEIFSSAETFDEWFQISGENDQQEVVQQLHKV 377 (1033)
T ss_pred HHHhh----------------cCcEEEEecCCCCCCHHHHHHHHhcCCCCcCCCHHHHHHHHccccccchHHHHHHHHHH
Confidence 65554 33458999998532 222211 111112111100 0
Q ss_pred --------------CcCCCCccccccCCcccchhhhccCCC----ccccccccc---cccccce----eee---------
Q 010357 248 --------------KKLPEDKSHVRFGSLESDVKEEVEHPS----TTMRSTTED---FKLPAQL----VQR--------- 293 (512)
Q Consensus 248 --------------~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~---~~~~~~~----~~~--------- 293 (512)
..++.......+..+............ ......... ......+ .+-
T Consensus 378 L~pf~LRR~KsdV~~~LPpK~e~iv~v~LS~~Qk~lY~~ll~k~~~~l~~g~~~~~LlnilmqLRk~cnHP~L~~~~ep~ 457 (1033)
T PLN03142 378 LRPFLLRRLKSDVEKGLPPKKETILKVGMSQMQKQYYKALLQKDLDVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPG 457 (1033)
T ss_pred hhHHHhhhhHHHHhhhCCCceeEEEeeCCCHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhCCHHhhhccccc
Confidence 000000000000000000000000000 000000000 0000000 000
Q ss_pred ------EEEecCCchHHHHHHHHHhhhccccCceEEEEeecchhhhhHHHhhhhhcCCCCCCChhHHHhhhhccceeeec
Q 010357 294 ------YVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLH 367 (512)
Q Consensus 294 ------~~~~~~~~k~~~l~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~l~ 367 (512)
-..+..+.|+..+..++..+. ..+.++|||+........+.++|... +++...++
T Consensus 458 ~~~~~~e~lie~SgKl~lLdkLL~~Lk--~~g~KVLIFSQft~~LdiLed~L~~~-----------------g~~y~rId 518 (1033)
T PLN03142 458 PPYTTGEHLVENSGKMVLLDKLLPKLK--ERDSRVLIFSQMTRLLDILEDYLMYR-----------------GYQYCRID 518 (1033)
T ss_pred CcccchhHHhhhhhHHHHHHHHHHHHH--hcCCeEEeehhHHHHHHHHHHHHHHc-----------------CCcEEEEC
Confidence 001123467777777777663 45789999999999999998888766 78899999
Q ss_pred CCCCHHHHHHHHHhhhcCC---CcEEEeecccccCCCCCCCcEEEEeCCCCChhHHHHhhhhcccCCCCccEEEe
Q 010357 368 GNMKQEDRRTTFGAFKTEK---KALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRVGRTARLGERGDSLLF 439 (512)
Q Consensus 368 g~~~~~~r~~~~~~f~~~~---~~vLvaT~~~~~Gldip~~~~VI~~~~p~s~~~~~Q~~GRagR~g~~g~~~~~ 439 (512)
|+++..+|..+++.|.+.. ..+|++|.+++.|+|+..+++||+||++||+....|++||+.|.|+...+.++
T Consensus 519 Gsts~~eRq~~Id~Fn~~~s~~~VfLLSTrAGGlGINLt~Ad~VIiyD~dWNP~~d~QAidRaHRIGQkk~V~Vy 593 (1033)
T PLN03142 519 GNTGGEDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADIVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVF 593 (1033)
T ss_pred CCCCHHHHHHHHHHhccccCCceEEEEeccccccCCchhhCCEEEEeCCCCChHHHHHHHHHhhhcCCCceEEEE
Confidence 9999999999999998643 35789999999999999999999999999999999999999999998766544
No 102
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=99.95 E-value=9.3e-26 Score=230.53 Aligned_cols=380 Identities=18% Similarity=0.185 Sum_probs=250.8
Q ss_pred cHHHHHHHHHhhcCCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHHhhcCC
Q 010357 43 TKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHW 122 (512)
Q Consensus 43 ~~~Q~~~~~~~~~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~ 122 (512)
+....+.+..+.++.-++++||||||||...-..+++.-. ..+.++.+.-|.|--|..+++.+...+...-.
T Consensus 52 ~~~~~~i~~ai~~~~vvii~getGsGKTTqlP~~lle~g~--------~~~g~I~~tQPRRlAArsvA~RvAeel~~~~G 123 (845)
T COG1643 52 TAVRDEILKAIEQNQVVIIVGETGSGKTTQLPQFLLEEGL--------GIAGKIGCTQPRRLAARSVAERVAEELGEKLG 123 (845)
T ss_pred HHHHHHHHHHHHhCCEEEEeCCCCCChHHHHHHHHHhhhc--------ccCCeEEecCchHHHHHHHHHHHHHHhCCCcC
Confidence 4555667777778888999999999999887777766543 23567888899998888888776665543222
Q ss_pred cceEEEeCCCchHHHHHHHcCCCCEEEeCChHHHHHHhhcCCCcCCceeEEEEcchhHHHhcCchHHHHHHHHHhccCCC
Q 010357 123 IVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILGSRNI 202 (512)
Q Consensus 123 ~~~~~~~~g~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lV~DEah~l~~~~~~~~~~~i~~~~~~~~~ 202 (512)
..+++..-.++.- .....|-++|.+.|++.+..... ++.+++||+||+|+ +.-...-++..++..-
T Consensus 124 ~~VGY~iRfe~~~------s~~Trik~mTdGiLlrei~~D~~--Ls~ys~vIiDEaHE-----RSl~tDilLgllk~~~- 189 (845)
T COG1643 124 ETVGYSIRFESKV------SPRTRIKVMTDGILLREIQNDPL--LSGYSVVIIDEAHE-----RSLNTDILLGLLKDLL- 189 (845)
T ss_pred ceeeEEEEeeccC------CCCceeEEeccHHHHHHHhhCcc--cccCCEEEEcchhh-----hhHHHHHHHHHHHHHH-
Confidence 4455555443322 23457999999999999886544 45999999999997 3333333333332200
Q ss_pred CCCCCCCcccccceeEEEEEEecchhhHHHHHhhcCCCeEEccCCCcCCCCccccccCCcccchhhhccCCCcccccccc
Q 010357 203 GSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLPEDKSHVRFGSLESDVKEEVEHPSTTMRSTTE 282 (512)
Q Consensus 203 ~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (512)
.....+.++|+||||+.. +.|...+.+.|. +.+.....+
T Consensus 190 -------~~rr~DLKiIimSATld~--~rfs~~f~~apv-i~i~GR~fP------------------------------- 228 (845)
T COG1643 190 -------ARRRDDLKLIIMSATLDA--ERFSAYFGNAPV-IEIEGRTYP------------------------------- 228 (845)
T ss_pred -------hhcCCCceEEEEecccCH--HHHHHHcCCCCE-EEecCCccc-------------------------------
Confidence 001115899999999875 345544444443 444444322
Q ss_pred ccccccceeeeEEEec-CCc-hHHHHHHHHHhhhccccCceEEEEeecchhhhhHHHhhhhhcCCCCCCChhHHHhhhhc
Q 010357 283 DFKLPAQLVQRYVKVP-CGS-RLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLR 360 (512)
Q Consensus 283 ~~~~~~~~~~~~~~~~-~~~-k~~~l~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 360 (512)
+..+|.... ... -...+...+.... ....+.+|||.+...+.+..++.|...... ..
T Consensus 229 -------Vei~Y~~~~~~d~~l~~ai~~~v~~~~-~~~~GdILvFLpG~~EI~~~~~~L~~~~l~-------------~~ 287 (845)
T COG1643 229 -------VEIRYLPEAEADYILLDAIVAAVDIHL-REGSGSILVFLPGQREIERTAEWLEKAELG-------------DD 287 (845)
T ss_pred -------eEEEecCCCCcchhHHHHHHHHHHHhc-cCCCCCEEEECCcHHHHHHHHHHHHhcccc-------------CC
Confidence 111221111 122 2344555555444 445789999999999999999999872110 16
Q ss_pred cceeeecCCCCHHHHHHHHHhhhcCCCcEEEeecccccCCCCCCCcEEEEeCC------------------CCChhHHHH
Q 010357 361 CKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDS------------------AGEATEYVH 422 (512)
Q Consensus 361 ~~v~~l~g~~~~~~r~~~~~~f~~~~~~vLvaT~~~~~Gldip~~~~VI~~~~------------------p~s~~~~~Q 422 (512)
..++.+||.|+.+++.++++--..|..+|++||++++.++.+|++.+||+-+. |-|-.+..|
T Consensus 288 ~~i~PLy~~L~~~eQ~rvF~p~~~~~RKVVlATNIAETSLTI~gIr~VIDsG~ak~~~y~~~~g~~~L~~~~ISqAsA~Q 367 (845)
T COG1643 288 LEILPLYGALSAEEQVRVFEPAPGGKRKVVLATNIAETSLTIPGIRYVIDSGLAKEKRYDPRTGLTRLETEPISKASADQ 367 (845)
T ss_pred cEEeeccccCCHHHHHhhcCCCCCCcceEEEEccccccceeeCCeEEEecCCcccccccccccCceeeeEEEechhhhhh
Confidence 78999999999999999999988887789999999999999999999997662 347778899
Q ss_pred hhhhcccCCCCccEEEecCccchhHHHHHHHcCCCCCccChhhHhhhccccCCCCccccccCccchhhHHHHHHHHHHHH
Q 010357 423 RVGRTARLGERGDSLLFLQPVEMDYLQDLEKHGVSLTEYPLLKVLDSFPLYGQKPRVKKFLTTESHPWILSLQNALESFI 502 (512)
Q Consensus 423 ~~GRagR~g~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 502 (512)
|.|||||. .+|.||-+|+.++.. .......-++-..++..++-.+...+.. .-....++--.|....++.+++.+.
T Consensus 368 RaGRAGR~-~pGicyRLyse~~~~--~~~~~t~PEIlrtdLs~~vL~l~~~G~~-~d~~~f~fld~P~~~~i~~A~~~L~ 443 (845)
T COG1643 368 RAGRAGRT-GPGICYRLYSEEDFL--AFPEFTLPEILRTDLSGLVLQLKSLGIG-QDIAPFPFLDPPPEAAIQAALTLLQ 443 (845)
T ss_pred hccccccC-CCceEEEecCHHHHH--hcccCCChhhhhcchHHHHHHHHhcCCC-CCcccCccCCCCChHHHHHHHHHHH
Confidence 99999999 589999999986544 2222112223333444444333333321 0112333334456777888887777
Q ss_pred Hhcccccc
Q 010357 503 IHEILSCS 510 (512)
Q Consensus 503 ~~~~~~~~ 510 (512)
.-+-++.+
T Consensus 444 ~LGAld~~ 451 (845)
T COG1643 444 ELGALDDS 451 (845)
T ss_pred HcCCcCCC
Confidence 66555443
No 103
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.95 E-value=1.7e-25 Score=226.66 Aligned_cols=373 Identities=18% Similarity=0.185 Sum_probs=237.4
Q ss_pred hcCCCCCcHHHHHHHHHhhcCCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHH
Q 010357 36 RLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHK 115 (512)
Q Consensus 36 ~~~~~~~~~~Q~~~~~~~~~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~ 115 (512)
.+|.. |++.|.-.--.+.+| -+..++||.|||+++.+|++..... +..+.|++|+..||.+.++++..
T Consensus 78 ~lgm~-~ydVQliGgl~L~~G--~IaEm~TGEGKTL~a~lp~~l~al~---------g~~VhIvT~ndyLA~RD~e~m~~ 145 (908)
T PRK13107 78 VFEMR-HFDVQLLGGMVLDSN--RIAEMRTGEGKTLTATLPAYLNALT---------GKGVHVITVNDYLARRDAENNRP 145 (908)
T ss_pred HhCCC-cCchHHhcchHhcCC--ccccccCCCCchHHHHHHHHHHHhc---------CCCEEEEeCCHHHHHHHHHHHHH
Confidence 34665 888888766555555 6889999999999999999877665 55699999999999999999999
Q ss_pred HHhhcCCcceEEEeCCCchHHHHHHHcCCCCEEEeCChHH-HHHHhhcCCCc-----CCceeEEEEcchhHHHhcC----
Q 010357 116 LLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRL-LDHLKHTSSFL-----HTNLRWIIFDEADRILELG---- 185 (512)
Q Consensus 116 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~Iiv~Tp~~l-~~~l~~~~~~~-----~~~~~~lV~DEah~l~~~~---- 185 (512)
+...+| +.++++.++.+... ......+||+++||+.| +++|...-... ...+.++|+||+|.++-..
T Consensus 146 l~~~lG-lsv~~i~~~~~~~~--r~~~Y~~dI~YgT~~e~gfDyLrdnm~~~~~~~vqr~~~~aIvDEvDsiLiDEArtP 222 (908)
T PRK13107 146 LFEFLG-LTVGINVAGLGQQE--KKAAYNADITYGTNNEFGFDYLRDNMAFSPQERVQRPLHYALIDEVDSILIDEARTP 222 (908)
T ss_pred HHHhcC-CeEEEecCCCCHHH--HHhcCCCCeEEeCCCcccchhhhccCccchhhhhccccceeeecchhhhccccCCCc
Confidence 999887 55566666666432 22334689999999999 88876642222 3678899999999976431
Q ss_pred ------------chHHHHHHHHHhccCCCCCC----CCCCcccccceeEEEEEEecchhhHHHH----------------
Q 010357 186 ------------FGKEIEEILDILGSRNIGSI----GEGNEVSNVKRQNLLLSATLNEKVNHLA---------------- 233 (512)
Q Consensus 186 ------------~~~~~~~i~~~~~~~~~~~~----~~~~~~~~~~~~~i~~SAT~~~~~~~~~---------------- 233 (512)
.+..+..+...+........ ....-......+.+.+|-.-......++
T Consensus 223 LIISg~~~~~~~~y~~~~~~v~~L~~~~~~~~~~~~~~~dy~idek~~~v~LTe~G~~~~e~~l~~~~~~~~~~~l~~~~ 302 (908)
T PRK13107 223 LIISGAAEDSSELYIKINTLIPNLIRQDKEDTEEYVGEGDYSIDEKAKQVHFTERGQEKVENLLIERGMLAEGDSLYSAA 302 (908)
T ss_pred eeecCCCccchHHHHHHHHHHHHHHhhhhccccccCCCCCEEEecCCCeeeechHHHHHHHHHHHhCCcccCcccccCch
Confidence 22333333333332100000 0000000112222222211001111100
Q ss_pred ---------------HhhcCCCeEEccC------CCcCCCCccccccCCcccchhhhccCCCcccccc------------
Q 010357 234 ---------------KISLETPVLIGLD------EKKLPEDKSHVRFGSLESDVKEEVEHPSTTMRST------------ 280 (512)
Q Consensus 234 ---------------~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------ 280 (512)
.++..+..++..+ +...........|.+.........+.........
T Consensus 303 ~~~~~~~i~~aL~A~~lf~~d~dYiV~dg~V~IVDe~TGRim~grrwsdGLHQaIEaKE~v~I~~e~~t~AsIT~QnfFr 382 (908)
T PRK13107 303 NISLLHHVNAALRAHTLFEKDVDYIVQDNEVIIVDEHTGRTMPGRRWSEGLHQAVEAKEGVHIQNENQTLASITFQNYFR 382 (908)
T ss_pred hhHHHHHHHHHHHHHHHHhcCCceEEECCEEEEEECCCCCCCCCCccchHHHHHHHHhcCCCCCCCceeeeeehHHHHHH
Confidence 0111111111111 1122222222233222221111111111111100
Q ss_pred ------------------------ccccccccc------eeeeEEEecCCchHHHHHHHHHhhhccccCceEEEEeecch
Q 010357 281 ------------------------TEDFKLPAQ------LVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCD 330 (512)
Q Consensus 281 ------------------------~~~~~~~~~------~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~lvf~~~~~ 330 (512)
.....+|.+ -....+.....+|+.++++.+.... ..+.++||||+++.
T Consensus 383 ~Y~kL~GMTGTa~te~~Ef~~iY~l~Vv~IPTnkp~~R~d~~d~iy~t~~~K~~Aii~ei~~~~--~~GrpVLV~t~sv~ 460 (908)
T PRK13107 383 QYEKLAGMTGTADTEAFEFQHIYGLDTVVVPTNRPMVRKDMADLVYLTADEKYQAIIKDIKDCR--ERGQPVLVGTVSIE 460 (908)
T ss_pred hhhHhhcccCCChHHHHHHHHHhCCCEEECCCCCCccceeCCCcEEeCHHHHHHHHHHHHHHHH--HcCCCEEEEeCcHH
Confidence 000011111 1112223344678888888888774 45789999999999
Q ss_pred hhhhHHHhhhhhcCCCCCCChhHHHhhhhccceeeecCCCCHHHHHHHHHhhhcCCCcEEEeecccccCCCCC-------
Q 010357 331 AVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFP------- 403 (512)
Q Consensus 331 ~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~l~g~~~~~~r~~~~~~f~~~~~~vLvaT~~~~~Gldip------- 403 (512)
.++.++..|... ++++..+|+++...++..+.+.|+.|. |+|||+++++|+|+.
T Consensus 461 ~se~ls~~L~~~-----------------gi~~~vLnak~~~~Ea~ii~~Ag~~G~--VtIATnmAGRGTDIkLggn~~~ 521 (908)
T PRK13107 461 QSELLARLMVKE-----------------KIPHEVLNAKFHEREAEIVAQAGRTGA--VTIATNMAGRGTDIVLGGNWNM 521 (908)
T ss_pred HHHHHHHHHHHC-----------------CCCeEeccCcccHHHHHHHHhCCCCCc--EEEecCCcCCCcceecCCchHH
Confidence 999999999988 888999999999999999999999996 999999999999995
Q ss_pred ------------------------------CCcEEEEeCCCCChhHHHHhhhhcccCCCCccEEEecCccc
Q 010357 404 ------------------------------KVKCIIQYDSAGEATEYVHRVGRTARLGERGDSLLFLQPVE 444 (512)
Q Consensus 404 ------------------------------~~~~VI~~~~p~s~~~~~Q~~GRagR~g~~g~~~~~~~~~~ 444 (512)
+-=+||-...+.|..-=.|-.|||||.|.+|.+..|++-+|
T Consensus 522 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerheSrRID~QLrGRaGRQGDPGss~f~lSlED 592 (908)
T PRK13107 522 EIEALENPTAEQKAKIKADWQIRHDEVVAAGGLHILGTERHESRRIDNQLRGRAGRQGDAGSSRFYLSMED 592 (908)
T ss_pred hhhhhcchhhHHHHHHHHHHHhhHHHHHHcCCCEEEecccCchHHHHhhhhcccccCCCCCceeEEEEeCc
Confidence 12278888899999999999999999999999999999776
No 104
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.94 E-value=1.9e-25 Score=193.48 Aligned_cols=167 Identities=36% Similarity=0.509 Sum_probs=137.0
Q ss_pred cHHHHHHHHHhhcCCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHHhhcCC
Q 010357 43 TKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHW 122 (512)
Q Consensus 43 ~~~Q~~~~~~~~~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~ 122 (512)
||+|.++++.+.+++++++.+|||+|||+++..++++.+... ...++++++|+++|+.|..+.+..++.. ..
T Consensus 1 t~~Q~~~~~~i~~~~~~li~aptGsGKT~~~~~~~l~~~~~~-------~~~~~lii~P~~~l~~q~~~~~~~~~~~-~~ 72 (169)
T PF00270_consen 1 TPLQQEAIEAIISGKNVLISAPTGSGKTLAYILPALNRLQEG-------KDARVLIIVPTRALAEQQFERLRKFFSN-TN 72 (169)
T ss_dssp -HHHHHHHHHHHTTSEEEEECSTTSSHHHHHHHHHHHHHHTT-------SSSEEEEEESSHHHHHHHHHHHHHHTTT-TT
T ss_pred CHHHHHHHHHHHcCCCEEEECCCCCccHHHHHHHHHhhhccC-------CCceEEEEeecccccccccccccccccc-cc
Confidence 689999999999999999999999999999999999988772 1347999999999999999999998775 23
Q ss_pred cceEEEeCCCchH-HHHHHHcCCCCEEEeCChHHHHHHhhcCCCcCCceeEEEEcchhHHHhcCchHHHHHHHHHhccCC
Q 010357 123 IVPGYVMGGENRS-KEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILGSRN 201 (512)
Q Consensus 123 ~~~~~~~~g~~~~-~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lV~DEah~l~~~~~~~~~~~i~~~~~~~~ 201 (512)
..+..+.++.... .....+..+++|+|+||++|.+.+..... .+.++++||+||+|++....+...+..++..+....
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~-~~~~~~~iViDE~h~l~~~~~~~~~~~i~~~~~~~~ 151 (169)
T PF00270_consen 73 VRVVLLHGGQSISEDQREVLSNQADILVTTPEQLLDLISNGKI-NISRLSLIVIDEAHHLSDETFRAMLKSILRRLKRFK 151 (169)
T ss_dssp SSEEEESTTSCHHHHHHHHHHTTSSEEEEEHHHHHHHHHTTSS-TGTTESEEEEETHHHHHHTTHHHHHHHHHHHSHTTT
T ss_pred cccccccccccccccccccccccccccccCcchhhcccccccc-ccccceeeccCcccccccccHHHHHHHHHHHhcCCC
Confidence 4556667776654 44445556799999999999999987444 556699999999999999888888988888875422
Q ss_pred CCCCCCCCcccccceeEEEEEEecchhhHH
Q 010357 202 IGSIGEGNEVSNVKRQNLLLSATLNEKVNH 231 (512)
Q Consensus 202 ~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~ 231 (512)
+.+++++|||+++.++.
T Consensus 152 -------------~~~~i~~SAT~~~~~~~ 168 (169)
T PF00270_consen 152 -------------NIQIILLSATLPSNVEK 168 (169)
T ss_dssp -------------TSEEEEEESSSTHHHHH
T ss_pred -------------CCcEEEEeeCCChhHhh
Confidence 57899999999865543
No 105
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.93 E-value=1e-24 Score=227.32 Aligned_cols=328 Identities=21% Similarity=0.248 Sum_probs=212.6
Q ss_pred CcHHHHHHHHHhhcC---C-CEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHH
Q 010357 42 PTKVQAQAIPVILSG---R-HVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLL 117 (512)
Q Consensus 42 ~~~~Q~~~~~~~~~~---~-~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 117 (512)
.+++|..++..+.+. . .+++.||||+|||.+++.++...+... +....+++++.|++++.+++++.+...+
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~-----~~~~~r~i~vlP~~t~ie~~~~r~~~~~ 270 (733)
T COG1203 196 GYELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEK-----IKLKSRVIYVLPFRTIIEDMYRRAKEIF 270 (733)
T ss_pred hhHHHHHHHHHHHhcccccccEEEEeCCCCChHHHHHHHHHHHhhcc-----ccccceEEEEccHHHHHHHHHHHHHhhh
Confidence 489999999887743 4 678999999999999999998887662 1247789999999999999999999876
Q ss_pred hhcCCcceEEEeCCCchHHHHHHHc---------------CCCCEEEeCChHHHHHHhhcCCCc-C--CceeEEEEcchh
Q 010357 118 HRFHWIVPGYVMGGENRSKEKARLR---------------KGISILVATPGRLLDHLKHTSSFL-H--TNLRWIIFDEAD 179 (512)
Q Consensus 118 ~~~~~~~~~~~~~g~~~~~~~~~~~---------------~~~~Iiv~Tp~~l~~~l~~~~~~~-~--~~~~~lV~DEah 179 (512)
....... ....+........... ....+.++||............+. + -..+++||||+|
T Consensus 271 ~~~~~~~--~~~h~~~~~~~~~~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~S~vIlDE~h 348 (733)
T COG1203 271 GLFSVIG--KSLHSSSKEPLLLEPDQDILLTLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEFLALLLTSLVILDEVH 348 (733)
T ss_pred ccccccc--ccccccccchhhhccccccceeEEecccccceeccccccCHhHhhhhhccccchHHHHHHHhhchhhccHH
Confidence 5433211 1011212111111110 012355555555544222211111 0 124689999999
Q ss_pred HHHhcCchHHHHHHHHHhccCCCCCCCCCCcccccceeEEEEEEecchhhHHHHHhhcCCCeEEccCCCcCCCCcccccc
Q 010357 180 RILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLPEDKSHVRF 259 (512)
Q Consensus 180 ~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (512)
.+........+..++..+... ...++++|||+|+...............+.......+......
T Consensus 349 ~~~~~~~~~~l~~~i~~l~~~--------------g~~ill~SATlP~~~~~~l~~~~~~~~~~~~~~~~~~~~~e~~-- 412 (733)
T COG1203 349 LYADETMLAALLALLEALAEA--------------GVPVLLMSATLPPFLKEKLKKALGKGREVVENAKFCPKEDEPG-- 412 (733)
T ss_pred hhcccchHHHHHHHHHHHHhC--------------CCCEEEEecCCCHHHHHHHHHHHhcccceeccccccccccccc--
Confidence 877664444555555555433 7789999999999888877776665554433322100000000
Q ss_pred CCcccchhhhccCCCccccccccccccccceeeeEEEecCCchHHHHHHHHHhhhccccCceEEEEeecchhhhhHHHhh
Q 010357 260 GSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLL 339 (512)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l 339 (512)
... ........... ......+... ...+.+++|.|||+..|..+++.|
T Consensus 413 --------------------------~~~---~~~~~~~~~~~-~~~~~~~~~~--~~~~~kvlvI~NTV~~Aie~Y~~L 460 (733)
T COG1203 413 --------------------------LKR---KERVDVEDGPQ-EELIELISEE--VKEGKKVLVIVNTVDRAIELYEKL 460 (733)
T ss_pred --------------------------ccc---ccchhhhhhhh-Hhhhhcchhh--hccCCcEEEEEecHHHHHHHHHHH
Confidence 000 00000000000 0111112111 245689999999999999999999
Q ss_pred hhhcCCCCCCChhHHHhhhhccceeeecCCCCHHHHHHHHHhhh----cCCCcEEEeecccccCCCCCCCcEEEEeCCCC
Q 010357 340 SEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFK----TEKKALLLSTDVAARGLDFPKVKCIIQYDSAG 415 (512)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~v~~l~g~~~~~~r~~~~~~f~----~~~~~vLvaT~~~~~Gldip~~~~VI~~~~p~ 415 (512)
+.. +..++.+||.+...+|.+.++++. .+...|+|||++++.|+|+ +.+++|. -+.
T Consensus 461 k~~-----------------~~~v~LlHSRf~~~dR~~ke~~l~~~~~~~~~~IvVaTQVIEagvDi-dfd~mIT--e~a 520 (733)
T COG1203 461 KEK-----------------GPKVLLLHSRFTLKDREEKERELKKLFKQNEGFIVVATQVIEAGVDI-DFDVLIT--ELA 520 (733)
T ss_pred Hhc-----------------CCCEEEEecccchhhHHHHHHHHHHHHhccCCeEEEEeeEEEEEecc-ccCeeee--cCC
Confidence 986 336999999999999998888655 4567899999999999998 4777665 445
Q ss_pred ChhHHHHhhhhcccCC--CCccEEEecCccc
Q 010357 416 EATEYVHRVGRTARLG--ERGDSLLFLQPVE 444 (512)
Q Consensus 416 s~~~~~Q~~GRagR~g--~~g~~~~~~~~~~ 444 (512)
.+.+++||+||++|.| .+|..+++.....
T Consensus 521 PidSLIQR~GRv~R~g~~~~~~~~v~~~~~~ 551 (733)
T COG1203 521 PIDSLIQRAGRVNRHGKKENGKIYVYNDEER 551 (733)
T ss_pred CHHHHHHHHHHHhhcccccCCceeEeecccC
Confidence 5999999999999999 5567777655443
No 106
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=99.93 E-value=6.3e-24 Score=212.92 Aligned_cols=304 Identities=21% Similarity=0.279 Sum_probs=206.2
Q ss_pred HHHHHHHHHhcCCCCCcHHHHHHHHHhhcCCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcHHHH
Q 010357 27 STLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELC 106 (512)
Q Consensus 27 ~~~~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~ 106 (512)
+++.+.+++..|+. |+..|+-+...+..|+++-+.||||.|||.--++..+.... .|.++++++||+.|+
T Consensus 69 e~~~~fF~k~~G~~-~ws~QR~WakR~~rg~SFaiiAPTGvGKTTfg~~~sl~~a~---------kgkr~yii~PT~~Lv 138 (1187)
T COG1110 69 EEFEEFFKKATGFR-PWSAQRVWAKRLVRGKSFAIIAPTGVGKTTFGLLMSLYLAK---------KGKRVYIIVPTTTLV 138 (1187)
T ss_pred HHHHHHHHHhhCCC-chHHHHHHHHHHHcCCceEEEcCCCCchhHHHHHHHHHHHh---------cCCeEEEEecCHHHH
Confidence 45566777777885 99999999999999999999999999999654444444332 378899999999999
Q ss_pred HHHHHHHHHHHhhcCCcceEEEeCCCc----hHHHHHHHcC-CCCEEEeCChHHHHHHhhcCCCcCCceeEEEEcchhHH
Q 010357 107 LQVYEILHKLLHRFHWIVPGYVMGGEN----RSKEKARLRK-GISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRI 181 (512)
Q Consensus 107 ~q~~~~~~~~~~~~~~~~~~~~~~g~~----~~~~~~~~~~-~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lV~DEah~l 181 (512)
.|..+.++++....+...+..++.+.- .......+.+ ..||+|+|.+-|...+.....+ +++++++|.+|.+
T Consensus 139 ~Q~~~kl~~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~k~~e~L~~~---kFdfifVDDVDA~ 215 (1187)
T COG1110 139 RQVYERLKKFAEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQFLSKRFEELSKL---KFDFIFVDDVDAI 215 (1187)
T ss_pred HHHHHHHHHHHhhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHHHHhhHHHhccc---CCCEEEEccHHHH
Confidence 999999999987766222222244432 2233344444 4899999999888776654443 6899999999987
Q ss_pred HhcCchHHHHHHHHHhcc-----------------CC-CCCCCCC-----------CcccccceeEEEEEEecchhh--H
Q 010357 182 LELGFGKEIEEILDILGS-----------------RN-IGSIGEG-----------NEVSNVKRQNLLLSATLNEKV--N 230 (512)
Q Consensus 182 ~~~~~~~~~~~i~~~~~~-----------------~~-~~~~~~~-----------~~~~~~~~~~i~~SAT~~~~~--~ 230 (512)
+..+ ..+..++..+.- .. ....... ........++++.|||..+.- .
T Consensus 216 Lkas--kNvDriL~LlGf~eE~i~~a~~~~~lr~~~~~~~~~~~~~e~~~~~e~~~~~~r~k~g~LvvsSATg~~rg~R~ 293 (1187)
T COG1110 216 LKAS--KNVDRLLRLLGFSEEVIESAYELIKLRRKLYGEKRAERVREELREVEREREKKRRKLGILVVSSATGKPRGSRL 293 (1187)
T ss_pred Hhcc--ccHHHHHHHcCCCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhccCCceEEEeeccCCCCCchH
Confidence 6643 111111111110 00 0000000 001122568899999986532 2
Q ss_pred HHHHhhcCCCeEEccCCCcCCCCccccccCCcccchhhhccCCCccccccccccccccceeeeEEEecCCchHHHHHHHH
Q 010357 231 HLAKISLETPVLIGLDEKKLPEDKSHVRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCGSRLAVLLSIL 310 (512)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l 310 (512)
.+++..++-.. +.. ....+++.+.+... +-...+.+++
T Consensus 294 ~LfReLlgFev--G~~-------------------------------------~~~LRNIvD~y~~~---~~~e~~~elv 331 (1187)
T COG1110 294 KLFRELLGFEV--GSG-------------------------------------GEGLRNIVDIYVES---ESLEKVVELV 331 (1187)
T ss_pred HHHHHHhCCcc--Ccc-------------------------------------chhhhheeeeeccC---ccHHHHHHHH
Confidence 22222222110 000 01234555555544 4455566666
Q ss_pred HhhhccccCceEEEEeec---chhhhhHHHhhhhhcCCCCCCChhHHHhhhhccceeeecCCCCHHHHHHHHHhhhcCCC
Q 010357 311 KHLFDTEVSQKLVVFFST---CDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKK 387 (512)
Q Consensus 311 ~~~~~~~~~~~~lvf~~~---~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~l~g~~~~~~r~~~~~~f~~~~~ 387 (512)
+.+ +...|||++. ++.++.++++|++. |+++..+|+. ....++.|..|++
T Consensus 332 k~l-----G~GgLIfV~~d~G~e~aeel~e~Lr~~-----------------Gi~a~~~~a~-----~~~~le~F~~Gei 384 (1187)
T COG1110 332 KKL-----GDGGLIFVPIDYGREKAEELAEYLRSH-----------------GINAELIHAE-----KEEALEDFEEGEV 384 (1187)
T ss_pred HHh-----CCCeEEEEEcHHhHHHHHHHHHHHHhc-----------------CceEEEeecc-----chhhhhhhccCce
Confidence 665 5689999999 99999999999998 8889988874 3788999999999
Q ss_pred cEEEeec----ccccCCCCCC-CcEEEEeCCC
Q 010357 388 ALLLSTD----VAARGLDFPK-VKCIIQYDSA 414 (512)
Q Consensus 388 ~vLvaT~----~~~~Gldip~-~~~VI~~~~p 414 (512)
++||+.. ++.+|+|+|. +.++|.++.|
T Consensus 385 dvLVGvAsyYG~lVRGlDLP~rirYaIF~GvP 416 (1187)
T COG1110 385 DVLVGVASYYGVLVRGLDLPHRIRYAVFYGVP 416 (1187)
T ss_pred eEEEEecccccceeecCCchhheeEEEEecCC
Confidence 9999975 5899999996 8899998877
No 107
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=99.93 E-value=1e-24 Score=216.42 Aligned_cols=164 Identities=22% Similarity=0.252 Sum_probs=122.1
Q ss_pred CCCCCcHHHHHHHHHhhcCCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHH
Q 010357 38 GFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLL 117 (512)
Q Consensus 38 ~~~~~~~~Q~~~~~~~~~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 117 (512)
+|. |-.||++.+..+-.+++++++|||.+|||++....+...+.. ....-+++++|+++|+.|........+
T Consensus 509 dF~-Pd~WQ~elLDsvDr~eSavIVAPTSaGKTfisfY~iEKVLRe-------sD~~VVIyvaPtKaLVnQvsa~VyaRF 580 (1330)
T KOG0949|consen 509 DFC-PDEWQRELLDSVDRNESAVIVAPTSAGKTFISFYAIEKVLRE-------SDSDVVIYVAPTKALVNQVSANVYARF 580 (1330)
T ss_pred ccC-CcHHHHHHhhhhhcccceEEEeeccCCceeccHHHHHHHHhh-------cCCCEEEEecchHHHhhhhhHHHHHhh
Confidence 465 899999999999999999999999999999999988888877 446679999999999999988887776
Q ss_pred hhcCCcceEEEeCCCchHHHHHHHcCCCCEEEeCChHHHHHHhhc--CCCcCCceeEEEEcchhHHHhcCchHHHHHHHH
Q 010357 118 HRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHT--SSFLHTNLRWIIFDEADRILELGFGKEIEEILD 195 (512)
Q Consensus 118 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~--~~~~~~~~~~lV~DEah~l~~~~~~~~~~~i~~ 195 (512)
..........+.|....+.... .-.++|+|+-|+.+-..+... ..-+...++++|+||+|.+....-+...+.++.
T Consensus 581 ~~~t~~rg~sl~g~ltqEYsin--p~nCQVLITvPecleslLlspp~~q~~cerIRyiIfDEVH~iG~~ed~l~~Eqll~ 658 (1330)
T KOG0949|consen 581 DTKTFLRGVSLLGDLTQEYSIN--PWNCQVLITVPECLESLLLSPPHHQKFCERIRYIIFDEVHLIGNEEDGLLWEQLLL 658 (1330)
T ss_pred ccCccccchhhHhhhhHHhcCC--chhceEEEEchHHHHHHhcCchhhhhhhhcceEEEechhhhccccccchHHHHHHH
Confidence 3322111111222211111111 124899999999998877763 122446899999999999877666666666666
Q ss_pred HhccCCCCCCCCCCcccccceeEEEEEEecchh
Q 010357 196 ILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEK 228 (512)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~ 228 (512)
.. .+.++++|||+.+.
T Consensus 659 li-----------------~CP~L~LSATigN~ 674 (1330)
T KOG0949|consen 659 LI-----------------PCPFLVLSATIGNP 674 (1330)
T ss_pred hc-----------------CCCeeEEecccCCH
Confidence 55 67899999999764
No 108
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.93 E-value=7.5e-24 Score=202.43 Aligned_cols=379 Identities=17% Similarity=0.203 Sum_probs=252.9
Q ss_pred CcHHHHHHHHHhhcCCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcHHHHHHHHHHH-HHHHhhc
Q 010357 42 PTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEIL-HKLLHRF 120 (512)
Q Consensus 42 ~~~~Q~~~~~~~~~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~-~~~~~~~ 120 (512)
.+++-.+.+.++.+++-+++.|.||||||...-..+.+.=.. ..+.++-+--|.|..|..++... ..+...+
T Consensus 266 Vy~ykdell~av~e~QVLiI~GeTGSGKTTQiPQyL~EaGyt-------k~gk~IgcTQPRRVAAmSVAaRVA~EMgvkL 338 (902)
T KOG0923|consen 266 VYPYKDELLKAVKEHQVLIIVGETGSGKTTQIPQYLYEAGYT-------KGGKKIGCTQPRRVAAMSVAARVAEEMGVKL 338 (902)
T ss_pred chhhHHHHHHHHHhCcEEEEEcCCCCCccccccHHHHhcccc-------cCCceEeecCcchHHHHHHHHHHHHHhCccc
Confidence 456667778888888889999999999998765544444222 22455777789998888776554 4444433
Q ss_pred CCcceEEEeCCCchHHHHHHHcCCCCEEEeCChHHHHHHhhcCCCcCCceeEEEEcchhHHHhcCchHHHHHHHHHhccC
Q 010357 121 HWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILGSR 200 (512)
Q Consensus 121 ~~~~~~~~~~g~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lV~DEah~l~~~~~~~~~~~i~~~~~~~ 200 (512)
|.. +++-..-++.. ....-|-++|.+.|++-+.. ...+.+++++|+||||. +.-...-++..++..
T Consensus 339 G~e-VGYsIRFEdcT------SekTvlKYMTDGmLlREfL~--epdLasYSViiiDEAHE-----RTL~TDILfgLvKDI 404 (902)
T KOG0923|consen 339 GHE-VGYSIRFEDCT------SEKTVLKYMTDGMLLREFLS--EPDLASYSVIIVDEAHE-----RTLHTDILFGLVKDI 404 (902)
T ss_pred ccc-cceEEEecccc------CcceeeeeecchhHHHHHhc--cccccceeEEEeehhhh-----hhhhhhHHHHHHHHH
Confidence 321 22222111111 12235789999999887664 34456999999999996 333333333332221
Q ss_pred CCCCCCCCCcccccceeEEEEEEecchhhHHHHHhhcCCCeEEccCCCcCCCCccccccCCcccchhhhccCCCcccccc
Q 010357 201 NIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLPEDKSHVRFGSLESDVKEEVEHPSTTMRST 280 (512)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (512)
.. ..+..++++.|||+.. +.|...+...|+ +.++....+
T Consensus 405 ar---------~RpdLKllIsSAT~DA--ekFS~fFDdapI-F~iPGRRyP----------------------------- 443 (902)
T KOG0923|consen 405 AR---------FRPDLKLLISSATMDA--EKFSAFFDDAPI-FRIPGRRYP----------------------------- 443 (902)
T ss_pred Hh---------hCCcceEEeeccccCH--HHHHHhccCCcE-EeccCcccc-----------------------------
Confidence 11 1128899999999864 445554444444 444443221
Q ss_pred ccccccccceeeeEEEecCCchHHHHHHHHHhhhccccCceEEEEeecchhhhhHHHhhhhhcCCCCCCChhHHHhhhhc
Q 010357 281 TEDFKLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLR 360 (512)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 360 (512)
+.-.|...+..+-+.+.+..+.++....+.+.+|||....+..+...+.|.+.. ..+......
T Consensus 444 ---------Vdi~Yt~~PEAdYldAai~tVlqIH~tqp~GDILVFltGQeEIEt~~e~l~~~~--------~~LGski~e 506 (902)
T KOG0923|consen 444 ---------VDIFYTKAPEADYLDAAIVTVLQIHLTQPLGDILVFLTGQEEIETVKENLKERC--------RRLGSKIRE 506 (902)
T ss_pred ---------eeeecccCCchhHHHHHHhhheeeEeccCCccEEEEeccHHHHHHHHHHHHHHH--------HHhccccce
Confidence 223444556667778888888888888888999999999998888887776652 122222336
Q ss_pred cceeeecCCCCHHHHHHHHHhhhcCCCcEEEeecccccCCCCCCCcEEEEeC------------------CCCChhHHHH
Q 010357 361 CKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYD------------------SAGEATEYVH 422 (512)
Q Consensus 361 ~~v~~l~g~~~~~~r~~~~~~f~~~~~~vLvaT~~~~~Gldip~~~~VI~~~------------------~p~s~~~~~Q 422 (512)
.-+..+|+.++.+.+.++++--..|-.+|++||++++..+.++++.+||.-+ .|.|..+-.|
T Consensus 507 liv~PiYaNLPselQakIFePtP~gaRKVVLATNIAETSlTIdgI~yViDpGf~K~nsynprtGmesL~v~piSKAsA~Q 586 (902)
T KOG0923|consen 507 LIVLPIYANLPSELQAKIFEPTPPGARKVVLATNIAETSLTIDGIKYVIDPGFVKQNSYNPRTGMESLLVTPISKASANQ 586 (902)
T ss_pred EEEeeccccCChHHHHhhcCCCCCCceeEEEeecchhhceeecCeEEEecCccccccCcCCCcCceeEEEeeechhhhhh
Confidence 6788899999999999999999999999999999999999999999999755 3457778899
Q ss_pred hhhhcccCCCCccEEEecCccchhHHHHHHHcCC-CCCccChhhHhhhccccCCCCccccccCcc--chhhHHHHHHHHH
Q 010357 423 RVGRTARLGERGDSLLFLQPVEMDYLQDLEKHGV-SLTEYPLLKVLDSFPLYGQKPRVKKFLTTE--SHPWILSLQNALE 499 (512)
Q Consensus 423 ~~GRagR~g~~g~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~e 499 (512)
|+|||||.| +|.|+-+|+.- .+.+.++...+ .++..++.+.+-.+...+- ...+..+ -.|..+.+-.++|
T Consensus 587 RaGRAGRtg-PGKCfRLYt~~--aY~~eLE~~t~PEIqRtnL~nvVL~LkSLGI----~Dl~~FdFmDpPp~etL~~aLE 659 (902)
T KOG0923|consen 587 RAGRAGRTG-PGKCFRLYTAW--AYEHELEEMTVPEIQRTNLGNVVLLLKSLGI----HDLIHFDFLDPPPTETLLKALE 659 (902)
T ss_pred hccccCCCC-CCceEEeechh--hhhhhhccCCCcceeeccchhHHHHHHhcCc----chhcccccCCCCChHHHHHHHH
Confidence 999999995 79999999843 34455555442 3344455554433322221 1222222 2356788888888
Q ss_pred HHHHhcc
Q 010357 500 SFIIHEI 506 (512)
Q Consensus 500 ~~~~~~~ 506 (512)
++..-.-
T Consensus 660 ~LyaLGA 666 (902)
T KOG0923|consen 660 QLYALGA 666 (902)
T ss_pred HHHHhhc
Confidence 8876543
No 109
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.92 E-value=1.5e-23 Score=207.04 Aligned_cols=334 Identities=20% Similarity=0.192 Sum_probs=207.2
Q ss_pred CCcHHHHHHHHHhh----cC-CCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHH
Q 010357 41 APTKVQAQAIPVIL----SG-RHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHK 115 (512)
Q Consensus 41 ~~~~~Q~~~~~~~~----~~-~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~ 115 (512)
.+|.||..|+..+. +| +.+|+++.||+|||.++...+...+.. +..+++||++-+++|+.|.+..+..
T Consensus 165 ~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTAiaii~rL~r~-------~~~KRVLFLaDR~~Lv~QA~~af~~ 237 (875)
T COG4096 165 GPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTAIAIIDRLIKS-------GWVKRVLFLADRNALVDQAYGAFED 237 (875)
T ss_pred cchHHHHHHHHHHHHHHhcCCceEEEEEecCCCcceeHHHHHHHHHhc-------chhheeeEEechHHHHHHHHHHHHH
Confidence 58999999997765 34 458999999999999988877766655 3467799999999999999999888
Q ss_pred HHhhcCCcceEEEeCCCchHHHHHHHcCCCCEEEeCChHHHHHHhhc----CCCcCCceeEEEEcchhHHHhcCchHHHH
Q 010357 116 LLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHT----SSFLHTNLRWIIFDEADRILELGFGKEIE 191 (512)
Q Consensus 116 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~----~~~~~~~~~~lV~DEah~l~~~~~~~~~~ 191 (512)
+..... ......+... ...++|.++|++++...+... ..+....+++||+||||+- ......
T Consensus 238 ~~P~~~---~~n~i~~~~~-------~~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDEaHRg----i~~~~~ 303 (875)
T COG4096 238 FLPFGT---KMNKIEDKKG-------DTSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEAHRG----IYSEWS 303 (875)
T ss_pred hCCCcc---ceeeeecccC-------CcceeEEEeehHHHHhhhhccccccccCCCCceeEEEechhhhh----HHhhhH
Confidence 765322 2222211111 114589999999999887664 2345567999999999973 445555
Q ss_pred HHHHHhccCCCCCCCCCCcccccceeEEEEEEecchhhHHHHHhhc-CCCeEE-ccC----CCcCCCCcccc-----ccC
Q 010357 192 EILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISL-ETPVLI-GLD----EKKLPEDKSHV-----RFG 260 (512)
Q Consensus 192 ~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~-~~~~~~-~~~----~~~~~~~~~~~-----~~~ 260 (512)
.++.++. ...+++||||....+.-.-.++ +.|... +.. ...+....... ...
T Consensus 304 ~I~dYFd-----------------A~~~gLTATP~~~~d~~T~~~F~g~Pt~~YsleeAV~DGfLvpy~vi~i~~~~~~~ 366 (875)
T COG4096 304 SILDYFD-----------------AATQGLTATPKETIDRSTYGFFNGEPTYAYSLEEAVEDGFLVPYKVIRIDTDFDLD 366 (875)
T ss_pred HHHHHHH-----------------HHHHhhccCcccccccccccccCCCcceeecHHHHhhccccCCCCceEEeeecccc
Confidence 7888774 3446669999875544444444 333321 111 11111100000 001
Q ss_pred CcccchhhhccCCCcccccccccccccccee-eeEEEecCCchHHHHHHHHHhhhcc--cc--CceEEEEeecchhhhhH
Q 010357 261 SLESDVKEEVEHPSTTMRSTTEDFKLPAQLV-QRYVKVPCGSRLAVLLSILKHLFDT--EV--SQKLVVFFSTCDAVDFH 335 (512)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~k~~~l~~~l~~~~~~--~~--~~~~lvf~~~~~~~~~l 335 (512)
++..+.....+......... +........ .+... .......+...+...+.. .. .+++||||.+..+|+.+
T Consensus 367 G~~~~~~serek~~g~~i~~--dd~~~~~~d~dr~~v--~~~~~~~V~r~~~~~l~~~~~g~~~~KTIvFa~n~dHAe~i 442 (875)
T COG4096 367 GWKPDAGSEREKLQGEAIDE--DDQNFEARDFDRTLV--IPFRTETVARELTEYLKRGATGDEIGKTIVFAKNHDHAERI 442 (875)
T ss_pred CcCcCccchhhhhhccccCc--ccccccccccchhcc--ccchHHHHHHHHHHHhccccCCCccCceEEEeeCcHHHHHH
Confidence 11110000000000000000 000000000 00000 112334555555555544 21 46999999999999999
Q ss_pred HHhhhhhcCCCCCCChhHHHhhhhccceeeecCCCCHHHHHHHHHhhhcC--CCcEEEeecccccCCCCCCCcEEEEeCC
Q 010357 336 YSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTE--KKALLLSTDVAARGLDFPKVKCIIQYDS 413 (512)
Q Consensus 336 ~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~l~g~~~~~~r~~~~~~f~~~--~~~vLvaT~~~~~Gldip~~~~VI~~~~ 413 (512)
...|........ +.-+..+.|+ .++-...++.|... -.+|.++.+++..|+|+|.|..+|.+..
T Consensus 443 ~~~~~~~ype~~------------~~~a~~IT~d--~~~~q~~Id~f~~ke~~P~IaitvdlL~TGiDvpev~nlVF~r~ 508 (875)
T COG4096 443 REALVNEYPEYN------------GRYAMKITGD--AEQAQALIDNFIDKEKYPRIAITVDLLTTGVDVPEVVNLVFDRK 508 (875)
T ss_pred HHHHHHhCcccc------------CceEEEEecc--chhhHHHHHHHHhcCCCCceEEehhhhhcCCCchheeeeeehhh
Confidence 999988744321 3345666776 33444455556542 3568899999999999999999999999
Q ss_pred CCChhHHHHhhhhcccC
Q 010357 414 AGEATEYVHRVGRTARL 430 (512)
Q Consensus 414 p~s~~~~~Q~~GRagR~ 430 (512)
..|..-|.||+||+-|.
T Consensus 509 VrSktkF~QMvGRGTRl 525 (875)
T COG4096 509 VRSKTKFKQMVGRGTRL 525 (875)
T ss_pred hhhHHHHHHHhcCcccc
Confidence 99999999999999984
No 110
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.92 E-value=3.9e-24 Score=220.68 Aligned_cols=343 Identities=17% Similarity=0.145 Sum_probs=189.3
Q ss_pred CcHHHHHHHHHhh----c------CCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcHHHHHHHHH
Q 010357 42 PTKVQAQAIPVIL----S------GRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYE 111 (512)
Q Consensus 42 ~~~~Q~~~~~~~~----~------~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~ 111 (512)
++.+|.+|+..+. + .+..+++.|||||||++++..+...+.. ....++||++|+.+|..|+.+
T Consensus 239 ~r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~~~la~~l~~~-------~~~~~vl~lvdR~~L~~Q~~~ 311 (667)
T TIGR00348 239 QRYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTMLFAARKALEL-------LKNPKVFFVVDRRELDYQLMK 311 (667)
T ss_pred hHHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHHHHHHHHHHhh-------cCCCeEEEEECcHHHHHHHHH
Confidence 7999999998764 2 2578999999999999988877665532 236789999999999999999
Q ss_pred HHHHHHhhcCCcceEEEeCCCchHHHHHHHcC-CCCEEEeCChHHHHHHhhc-CCCcCCce-eEEEEcchhHHHhcCchH
Q 010357 112 ILHKLLHRFHWIVPGYVMGGENRSKEKARLRK-GISILVATPGRLLDHLKHT-SSFLHTNL-RWIIFDEADRILELGFGK 188 (512)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~Iiv~Tp~~l~~~l~~~-~~~~~~~~-~~lV~DEah~l~~~~~~~ 188 (512)
.|..+... . .....+.......+.. ..+|+|+|.++|...+... ..+..... .+||+||||+.....+.
T Consensus 312 ~f~~~~~~----~---~~~~~s~~~L~~~l~~~~~~iivtTiQk~~~~~~~~~~~~~~~~~~~lvIvDEaHrs~~~~~~- 383 (667)
T TIGR00348 312 EFQSLQKD----C---AERIESIAELKRLLEKDDGGIIITTIQKFDKKLKEEEEKFPVDRKEVVVIFDEAHRSQYGELA- 383 (667)
T ss_pred HHHhhCCC----C---CcccCCHHHHHHHHhCCCCCEEEEEhHHhhhhHhhhhhccCCCCCCEEEEEEcCccccchHHH-
Confidence 99987431 0 1112234444444433 3689999999998644321 11111111 28999999985432222
Q ss_pred HHHHHHHHhccCCCCCCCCCCcccccceeEEEEEEecchhhHHHHHhhcC---CCeEEccCCCcCCCCccc--cccCCcc
Q 010357 189 EIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLE---TPVLIGLDEKKLPEDKSH--VRFGSLE 263 (512)
Q Consensus 189 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~--~~~~~~~ 263 (512)
..+...++ +...+++||||-..........+. ...+..+.-......+.. +.+....
T Consensus 384 --~~l~~~~p----------------~a~~lGfTaTP~~~~d~~t~~~f~~~fg~~i~~Y~~~~AI~dG~~~~i~Y~~~~ 445 (667)
T TIGR00348 384 --KNLKKALK----------------NASFFGFTGTPIFKKDRDTSLTFAYVFGRYLHRYFITDAIRDGLTVKIDYEDRL 445 (667)
T ss_pred --HHHHhhCC----------------CCcEEEEeCCCcccccccccccccCCCCCeEEEeeHHHHhhcCCeeeEEEEecc
Confidence 22223444 668999999995321111101111 011111111110111100 0000000
Q ss_pred c--chhhhc-cC-CCcccccccccc--ccccceeee----EEEecCCchHHHHHHHHHhhhc---cccCceEEEEeecch
Q 010357 264 S--DVKEEV-EH-PSTTMRSTTEDF--KLPAQLVQR----YVKVPCGSRLAVLLSILKHLFD---TEVSQKLVVFFSTCD 330 (512)
Q Consensus 264 ~--~~~~~~-~~-~~~~~~~~~~~~--~~~~~~~~~----~~~~~~~~k~~~l~~~l~~~~~---~~~~~~~lvf~~~~~ 330 (512)
. ...... .. ............ .....+... ............+...+.+++. ...+++++|||.++.
T Consensus 446 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ia~~i~~h~~~~~~~~~~kamvv~~sr~ 525 (667)
T TIGR00348 446 PEDHLDRKKLDAFFDEIFELLPERIREITKESLKEKLQKTKKILFNEDRLESIAKDIAEHYAKFKELFKFKAMVVAISRY 525 (667)
T ss_pred hhhccChHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHhhhcChHHHHHHHHHHHHHHHHhhhcccCceeEEEecHH
Confidence 0 000000 00 000000000000 000000000 0011122333444444443332 122489999999999
Q ss_pred hhhhHHHhhhhhcCCCCCCChhHHHhhhhccceeeecCCCCHH---------------------HHHHHHHhhhc-CCCc
Q 010357 331 AVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQE---------------------DRRTTFGAFKT-EKKA 388 (512)
Q Consensus 331 ~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~l~g~~~~~---------------------~r~~~~~~f~~-~~~~ 388 (512)
.|..+.+.+.+...... +.....++++.+.. ....++++|++ +..+
T Consensus 526 ~a~~~~~~l~~~~~~~~------------~~~~vv~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fk~~~~~~ 593 (667)
T TIGR00348 526 ACVEEKNALDEELNEKF------------EASAIVMTGKESDDAEIRDYNKHIRTKFDKSDGFEIYYKDLERFKKEENPK 593 (667)
T ss_pred HHHHHHHHHHhhccccc------------CCeeEEecCCccchhHHHHHHHHhccccccchhhhHHHHHHHHhcCCCCce
Confidence 99999999876532210 11222333332211 23478889976 6789
Q ss_pred EEEeecccccCCCCCCCcEEEEeCCCCChhHHHHhhhhcccC
Q 010357 389 LLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRVGRTARL 430 (512)
Q Consensus 389 vLvaT~~~~~Gldip~~~~VI~~~~p~s~~~~~Q~~GRagR~ 430 (512)
|||+++++.+|+|.|.+++++...+..+ ..++|++||+.|.
T Consensus 594 ilIVvdmllTGFDaP~l~tLyldKplk~-h~LlQai~R~nR~ 634 (667)
T TIGR00348 594 LLIVVDMLLTGFDAPILNTLYLDKPLKY-HGLLQAIARTNRI 634 (667)
T ss_pred EEEEEcccccccCCCccceEEEeccccc-cHHHHHHHHhccc
Confidence 9999999999999999998877776555 4689999999993
No 111
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=99.92 E-value=4.5e-23 Score=193.23 Aligned_cols=127 Identities=20% Similarity=0.308 Sum_probs=112.9
Q ss_pred EecCCchHHHHHHHHHhhhccccCceEEEEeecchhhhhHHHhhhhhcCCCCCCChhHHHhhhhccceeeecCCCCHHHH
Q 010357 296 KVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDR 375 (512)
Q Consensus 296 ~~~~~~k~~~l~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~l~g~~~~~~r 375 (512)
.-+.......++.-+.... ..+.+++|-+=|++.++.+.++|.+. |+++.++|++...-+|
T Consensus 425 vRp~~~QvdDL~~EI~~r~--~~~eRvLVTtLTKkmAEdLT~Yl~e~-----------------gikv~YlHSdidTlER 485 (663)
T COG0556 425 VRPTKGQVDDLLSEIRKRV--AKNERVLVTTLTKKMAEDLTEYLKEL-----------------GIKVRYLHSDIDTLER 485 (663)
T ss_pred eecCCCcHHHHHHHHHHHH--hcCCeEEEEeehHHHHHHHHHHHHhc-----------------CceEEeeeccchHHHH
Confidence 3345566777777777653 34689999999999999999999998 9999999999999999
Q ss_pred HHHHHhhhcCCCcEEEeecccccCCCCCCCcEEEEeCC-----CCChhHHHHhhhhcccCCCCccEEEecCc
Q 010357 376 RTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDS-----AGEATEYVHRVGRTARLGERGDSLLFLQP 442 (512)
Q Consensus 376 ~~~~~~f~~~~~~vLvaT~~~~~Gldip~~~~VI~~~~-----p~s~~~~~Q~~GRagR~g~~g~~~~~~~~ 442 (512)
.++++.++.|..+|||+.+.+-+|+|+|.|++|..+|. ..|..+++|.+|||+|. -.|.++++.+.
T Consensus 486 ~eIirdLR~G~~DvLVGINLLREGLDiPEVsLVAIlDADKeGFLRse~SLIQtIGRAARN-~~GkvIlYAD~ 556 (663)
T COG0556 486 VEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVILYADK 556 (663)
T ss_pred HHHHHHHhcCCccEEEeehhhhccCCCcceeEEEEeecCccccccccchHHHHHHHHhhc-cCCeEEEEchh
Confidence 99999999999999999999999999999999998885 46999999999999997 57999999775
No 112
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=99.92 E-value=4.8e-23 Score=207.70 Aligned_cols=343 Identities=21% Similarity=0.253 Sum_probs=226.2
Q ss_pred CCcHHHHHHHHHhhcC----CCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHH
Q 010357 41 APTKVQAQAIPVILSG----RHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKL 116 (512)
Q Consensus 41 ~~~~~Q~~~~~~~~~~----~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 116 (512)
.+.+-|+.++..+.+. +..++.+.||||||.+|+-.+.+.+.+ |..+|+++|-.+|..|+.+.|+..
T Consensus 198 ~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~~L~~---------GkqvLvLVPEI~Ltpq~~~rf~~r 268 (730)
T COG1198 198 ALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAKVLAQ---------GKQVLVLVPEIALTPQLLARFKAR 268 (730)
T ss_pred ccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHHHHHHHHHc---------CCEEEEEeccccchHHHHHHHHHH
Confidence 4678899999988755 678999999999999999999999977 899999999999999999999988
Q ss_pred HhhcCCcceEEEeCCCc----hHHHHHHHcCCCCEEEeCChHHHHHHhhcCCCcCCceeEEEEcchhHHHhc---C---c
Q 010357 117 LHRFHWIVPGYVMGGEN----RSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILEL---G---F 186 (512)
Q Consensus 117 ~~~~~~~~~~~~~~g~~----~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lV~DEah~l~~~---~---~ 186 (512)
+. ..+.++..+-+ ...+.....+...|+|+|-..++- .+.++++||+||-|.-.-. + .
T Consensus 269 Fg----~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRSAlF~--------Pf~~LGLIIvDEEHD~sYKq~~~prYh 336 (730)
T COG1198 269 FG----AKVAVLHSGLSPGERYRVWRRARRGEARVVIGTRSALFL--------PFKNLGLIIVDEEHDSSYKQEDGPRYH 336 (730)
T ss_pred hC----CChhhhcccCChHHHHHHHHHHhcCCceEEEEechhhcC--------chhhccEEEEeccccccccCCcCCCcC
Confidence 75 33344444433 333344445668999999544432 3458999999999964321 1 2
Q ss_pred hHHHHHHHHHhccCCCCCCCCCCcccccceeEEEEEEecchhhHHHHHhhcCCCeEEccCCCcCCCCccccccCCcccch
Q 010357 187 GKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLPEDKSHVRFGSLESDV 266 (512)
Q Consensus 187 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (512)
.+.+........ +..+|+-|||++-..-... .-+.+..+.+....-......+...+.
T Consensus 337 ARdvA~~Ra~~~----------------~~pvvLgSATPSLES~~~~--~~g~y~~~~L~~R~~~a~~p~v~iiDm---- 394 (730)
T COG1198 337 ARDVAVLRAKKE----------------NAPVVLGSATPSLESYANA--ESGKYKLLRLTNRAGRARLPRVEIIDM---- 394 (730)
T ss_pred HHHHHHHHHHHh----------------CCCEEEecCCCCHHHHHhh--hcCceEEEEccccccccCCCcceEEec----
Confidence 223333333322 7899999999874322222 112222332222211000000000000
Q ss_pred hhhccCCCccccccccccccccceeeeEEEecCCchHHHHHHHHHhhhccccCceEEEEeecchhhhhHHHhhhhhcCCC
Q 010357 267 KEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSP 346 (512)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~ 346 (512)
.......+. .--..+++.+++.+ ..+.++|+|.|.+..+..+...-.....+|
T Consensus 395 ------------------------r~e~~~~~~-~lS~~Ll~~i~~~l--~~geQ~llflnRRGys~~l~C~~Cg~v~~C 447 (730)
T COG1198 395 ------------------------RKEPLETGR-SLSPALLEAIRKTL--ERGEQVLLFLNRRGYAPLLLCRDCGYIAEC 447 (730)
T ss_pred ------------------------cccccccCc-cCCHHHHHHHHHHH--hcCCeEEEEEccCCccceeecccCCCcccC
Confidence 000000000 01255666676664 346899999999887755443322211111
Q ss_pred C---------------------------------------------CCChhHHHhhhhccceeeecCCCCHHHH--HHHH
Q 010357 347 H---------------------------------------------SQPDMELKQLFLRCKTFRLHGNMKQEDR--RTTF 379 (512)
Q Consensus 347 ~---------------------------------------------~~~~~~~~~~~~~~~v~~l~g~~~~~~r--~~~~ 379 (512)
. +..++++..+||+.++..+.++.+.... +..+
T Consensus 448 p~Cd~~lt~H~~~~~L~CH~Cg~~~~~p~~Cp~Cgs~~L~~~G~GterieeeL~~~FP~~rv~r~d~Dtt~~k~~~~~~l 527 (730)
T COG1198 448 PNCDSPLTLHKATGQLRCHYCGYQEPIPQSCPECGSEHLRAVGPGTERIEEELKRLFPGARIIRIDSDTTRRKGALEDLL 527 (730)
T ss_pred CCCCcceEEecCCCeeEeCCCCCCCCCCCCCCCCCCCeeEEecccHHHHHHHHHHHCCCCcEEEEccccccchhhHHHHH
Confidence 1 1127778889999999999999877654 6889
Q ss_pred HhhhcCCCcEEEeecccccCCCCCCCcEEEEeCCCC------------ChhHHHHhhhhcccCCCCccEEEecCccchhH
Q 010357 380 GAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAG------------EATEYVHRVGRTARLGERGDSLLFLQPVEMDY 447 (512)
Q Consensus 380 ~~f~~~~~~vLvaT~~~~~Gldip~~~~VI~~~~p~------------s~~~~~Q~~GRagR~g~~g~~~~~~~~~~~~~ 447 (512)
..|.+|+.+|||.|+++..|.|+|++++|...+... ....+.|-+|||||.+++|.+++=....|...
T Consensus 528 ~~~~~ge~dILiGTQmiaKG~~fp~vtLVgvl~aD~~L~~~DfRA~Er~fqll~QvaGRAgR~~~~G~VvIQT~~P~hp~ 607 (730)
T COG1198 528 DQFANGEADILIGTQMIAKGHDFPNVTLVGVLDADTGLGSPDFRASERTFQLLMQVAGRAGRAGKPGEVVIQTYNPDHPA 607 (730)
T ss_pred HHHhCCCCCeeecchhhhcCCCcccceEEEEEechhhhcCCCcchHHHHHHHHHHHHhhhccCCCCCeEEEEeCCCCcHH
Confidence 999999999999999999999999999987655332 33355899999999999998887765555555
Q ss_pred HHHHHH
Q 010357 448 LQDLEK 453 (512)
Q Consensus 448 ~~~l~~ 453 (512)
+..+.+
T Consensus 608 i~~~~~ 613 (730)
T COG1198 608 IQALKR 613 (730)
T ss_pred HHHHHh
Confidence 555544
No 113
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=99.92 E-value=9.3e-23 Score=198.21 Aligned_cols=348 Identities=16% Similarity=0.220 Sum_probs=227.9
Q ss_pred CCcHHHHHHHHHhh----cCCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHH
Q 010357 41 APTKVQAQAIPVIL----SGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKL 116 (512)
Q Consensus 41 ~~~~~Q~~~~~~~~----~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 116 (512)
.+++||.+.+.-+. +|-|.|+...+|.|||+..+..+....... +..+.-||++|...|.+ |.++++++
T Consensus 167 ~lr~YQveGlnWLi~l~engingILaDEMGLGKTlQtIs~l~yl~~~~------~~~GPfLVi~P~StL~N-W~~Ef~rf 239 (971)
T KOG0385|consen 167 ELRDYQLEGLNWLISLYENGINGILADEMGLGKTLQTISLLGYLKGRK------GIPGPFLVIAPKSTLDN-WMNEFKRF 239 (971)
T ss_pred ccchhhhccHHHHHHHHhcCcccEeehhcccchHHHHHHHHHHHHHhc------CCCCCeEEEeeHhhHHH-HHHHHHHh
Confidence 59999999887654 677899999999999998765554433321 12445899999988765 78888888
Q ss_pred HhhcCCcceEEEeCCCchHH-HHHH-H-cCCCCEEEeCChHHHHHHhhcCCCcCCceeEEEEcchhHHHhcCchHHHHHH
Q 010357 117 LHRFHWIVPGYVMGGENRSK-EKAR-L-RKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEI 193 (512)
Q Consensus 117 ~~~~~~~~~~~~~~g~~~~~-~~~~-~-~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lV~DEah~l~~~~~~~~~~~i 193 (512)
+.. +.+..++|...... ..+. . ....+|+|+|++..++.-.-.+.+ ++.++|+||||++.+ -.+.+..+
T Consensus 240 ~P~---l~~~~~~Gdk~eR~~~~r~~~~~~~fdV~iTsYEi~i~dk~~lk~~---~W~ylvIDEaHRiKN--~~s~L~~~ 311 (971)
T KOG0385|consen 240 TPS---LNVVVYHGDKEERAALRRDIMLPGRFDVCITSYEIAIKDKSFLKKF---NWRYLVIDEAHRIKN--EKSKLSKI 311 (971)
T ss_pred CCC---cceEEEeCCHHHHHHHHHHhhccCCCceEeehHHHHHhhHHHHhcC---CceEEEechhhhhcc--hhhHHHHH
Confidence 653 44444555433222 2222 2 235899999999987643222223 789999999999876 45666677
Q ss_pred HHHhccCCCCCCCCCCcccccceeEEEEEEecchh-------------------hHHHHHhhcCCC--------------
Q 010357 194 LDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEK-------------------VNHLAKISLETP-------------- 240 (512)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~-------------------~~~~~~~~~~~~-------------- 240 (512)
++.+. ....+++|+||-.+ .+.|..++....
T Consensus 312 lr~f~----------------~~nrLLlTGTPLQNNL~ELWaLLnFllPdiF~~~e~F~swF~~~~~~~~~e~v~~Lh~v 375 (971)
T KOG0385|consen 312 LREFK----------------TDNRLLLTGTPLQNNLHELWALLNFLLPDIFNSAEDFDSWFDFTNCEGDQELVSRLHKV 375 (971)
T ss_pred HHHhc----------------ccceeEeeCCcccccHHHHHHHHHhhchhhccCHHHHHHHHcccccccCHHHHHHHHhh
Confidence 77776 33457888887322 122222221110
Q ss_pred --------------------e--EEccCCCcCCCCc------------------cccccCCcccchhhhccCCCcccccc
Q 010357 241 --------------------V--LIGLDEKKLPEDK------------------SHVRFGSLESDVKEEVEHPSTTMRST 280 (512)
Q Consensus 241 --------------------~--~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (512)
. .+.+......... ....+..+.........+++......
T Consensus 376 L~pFlLRR~K~dVe~sLppKkE~~iyvgms~mQkk~Y~~iL~kdl~~~n~~~~~~k~kL~NI~mQLRKccnHPYLF~g~e 455 (971)
T KOG0385|consen 376 LRPFLLRRIKSDVEKSLPPKKELIIYVGMSSMQKKWYKAILMKDLDALNGEGKGEKTKLQNIMMQLRKCCNHPYLFDGAE 455 (971)
T ss_pred hhHHHHHHHHHhHhhcCCCcceeeEeccchHHHHHHHHHHHHhcchhhcccccchhhHHHHHHHHHHHhcCCccccCCCC
Confidence 0 0000000000000 00001111122233344444433322
Q ss_pred ccccccccceeeeEEEecCCchHHHHHHHHHhhhccccCceEEEEeecchhhhhHHHhhhhhcCCCCCCChhHHHhhhhc
Q 010357 281 TEDFKLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLR 360 (512)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 360 (512)
.. ......-..+..+.|+..|-.++..+. ..+.++|||..-......+-+++.-. +
T Consensus 456 Pg-----~pyttdehLv~nSGKm~vLDkLL~~Lk--~~GhRVLIFSQmt~mLDILeDyc~~R-----------------~ 511 (971)
T KOG0385|consen 456 PG-----PPYTTDEHLVTNSGKMLVLDKLLPKLK--EQGHRVLIFSQMTRMLDILEDYCMLR-----------------G 511 (971)
T ss_pred CC-----CCCCcchHHHhcCcceehHHHHHHHHH--hCCCeEEEeHHHHHHHHHHHHHHHhc-----------------C
Confidence 21 001111112345678888888887773 56799999999888888887777665 8
Q ss_pred cceeeecCCCCHHHHHHHHHhhhcCCC---cEEEeecccccCCCCCCCcEEEEeCCCCChhHHHHhhhhcccCCCCccEE
Q 010357 361 CKTFRLHGNMKQEDRRTTFGAFKTEKK---ALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRVGRTARLGERGDSL 437 (512)
Q Consensus 361 ~~v~~l~g~~~~~~r~~~~~~f~~~~~---~vLvaT~~~~~Gldip~~~~VI~~~~p~s~~~~~Q~~GRagR~g~~g~~~ 437 (512)
+..+.+.|+++.++|...++.|..... -.|++|.+++.|+|+..+++||.||..|+|..=+|++-||.|.|+...+.
T Consensus 512 y~ycRiDGSt~~eeR~~aI~~fn~~~s~~FiFlLSTRAGGLGINL~aADtVIlyDSDWNPQ~DLQAmDRaHRIGQ~K~V~ 591 (971)
T KOG0385|consen 512 YEYCRLDGSTSHEEREDAIEAFNAPPSEKFIFLLSTRAGGLGINLTAADTVILYDSDWNPQVDLQAMDRAHRIGQKKPVV 591 (971)
T ss_pred ceeEeecCCCCcHHHHHHHHhcCCCCcceEEEEEeccccccccccccccEEEEecCCCCchhhhHHHHHHHhhCCcCceE
Confidence 889999999999999999999997653 35999999999999999999999999999999999999999999988655
Q ss_pred Ee--cCcc
Q 010357 438 LF--LQPV 443 (512)
Q Consensus 438 ~~--~~~~ 443 (512)
+| ++..
T Consensus 592 V~RLiten 599 (971)
T KOG0385|consen 592 VYRLITEN 599 (971)
T ss_pred EEEEeccc
Confidence 54 5543
No 114
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=99.91 E-value=4.5e-23 Score=210.00 Aligned_cols=353 Identities=17% Similarity=0.204 Sum_probs=234.2
Q ss_pred CcHHHHHHHHHhhcCCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHH-hhc
Q 010357 42 PTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLL-HRF 120 (512)
Q Consensus 42 ~~~~Q~~~~~~~~~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~-~~~ 120 (512)
.+..+.+.+.++.++..+++.|.||+|||......+++...... ...++++--|.|--|..+++....-- ...
T Consensus 174 a~~~r~~Il~~i~~~qVvvIsGeTGcGKTTQvpQfiLd~~~~~~------~~~~IicTQPRRIsAIsvAeRVa~ER~~~~ 247 (924)
T KOG0920|consen 174 AYKMRDTILDAIEENQVVVISGETGCGKTTQVPQFILDEAIESG------AACNIICTQPRRISAISVAERVAKERGESL 247 (924)
T ss_pred cHHHHHHHHHHHHhCceEEEeCCCCCCchhhhhHHHHHHHHhcC------CCCeEEecCCchHHHHHHHHHHHHHhcccc
Confidence 56777888888889999999999999999999888888765533 35568888899887777777754433 223
Q ss_pred CCcceEEEeCCCchHHHHHHHcCCCCEEEeCChHHHHHHhhcCCCcCCceeEEEEcchhHHHhc--CchHHHHHHHHHhc
Q 010357 121 HWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILEL--GFGKEIEEILDILG 198 (512)
Q Consensus 121 ~~~~~~~~~~g~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lV~DEah~l~~~--~~~~~~~~i~~~~~ 198 (512)
+ ..+++......... ....+.+||.+.|++.+.... .+.++..+|+||+|.=.-. .+.-.+..++...
T Consensus 248 g-~~VGYqvrl~~~~s------~~t~L~fcTtGvLLr~L~~~~--~l~~vthiivDEVHER~i~~DflLi~lk~lL~~~- 317 (924)
T KOG0920|consen 248 G-EEVGYQVRLESKRS------RETRLLFCTTGVLLRRLQSDP--TLSGVTHIIVDEVHERSINTDFLLILLKDLLPRN- 317 (924)
T ss_pred C-CeeeEEEeeecccC------CceeEEEecHHHHHHHhccCc--ccccCceeeeeeEEEccCCcccHHHHHHHHhhhC-
Confidence 3 45555554433222 225799999999999988643 3458999999999962211 1112222222222
Q ss_pred cCCCCCCCCCCcccccceeEEEEEEecchhhHHHHHhhcCCCeEEccCCCcCCCCccccccCCcccchhhhccCCCcccc
Q 010357 199 SRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLPEDKSHVRFGSLESDVKEEVEHPSTTMR 278 (512)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (512)
+..++|+||||+.. +.+.. +++....+.+.....+...... .++................
T Consensus 318 ---------------p~LkvILMSAT~da--e~fs~-YF~~~pvi~i~grtfpV~~~fL--EDil~~~~~~~~~~~~~~~ 377 (924)
T KOG0920|consen 318 ---------------PDLKVILMSATLDA--ELFSD-YFGGCPVITIPGRTFPVKEYFL--EDILSKTGYVSEDDSARSG 377 (924)
T ss_pred ---------------CCceEEEeeeecch--HHHHH-HhCCCceEeecCCCcchHHHHH--HHHHHHhcccccccccccc
Confidence 28999999999983 33444 4445555555544333221111 1111111000000000000
Q ss_pred ccccccccccceeeeEEEecCCchHHHHHHHHHhhhccccCceEEEEeecchhhhhHHHhhhhhcCCCCCCChhHHHhhh
Q 010357 279 STTEDFKLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLF 358 (512)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~ 358 (512)
...... ..........+.....+.+++..+++....+.+|||.+.......+.+.|.....-...
T Consensus 378 ~~~~~~-----~~~~~~~~~~~id~~Li~~li~~I~~~~~~GaILVFLPG~~eI~~~~~~L~~~~~f~~~---------- 442 (924)
T KOG0920|consen 378 PERSQL-----RLARLKLWEPEIDYDLIEDLIEYIDEREFEGAILVFLPGWEEILQLKELLEVNLPFADS---------- 442 (924)
T ss_pred cccCcc-----ccccchhccccccHHHHHHHHHhcccCCCCceEEEEcCCHHHHHHHHHHhhhccccccc----------
Confidence 000000 00001112233567778888888887777899999999999999999999754222110
Q ss_pred hccceeeecCCCCHHHHHHHHHhhhcCCCcEEEeecccccCCCCCCCcEEEEeCC--------CC----------ChhHH
Q 010357 359 LRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDS--------AG----------EATEY 420 (512)
Q Consensus 359 ~~~~v~~l~g~~~~~~r~~~~~~f~~~~~~vLvaT~~~~~Gldip~~~~VI~~~~--------p~----------s~~~~ 420 (512)
..+-+..+|+.|+..+++.+.+..-.|..+|+++|++++.+|.++++-+||..+. -. |...-
T Consensus 443 ~~~~ilplHs~~~s~eQ~~VF~~pp~g~RKIIlaTNIAETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna 522 (924)
T KOG0920|consen 443 LKFAILPLHSSIPSEEQQAVFKRPPKGTRKIILATNIAETSITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANA 522 (924)
T ss_pred cceEEEeccccCChHHHHHhcCCCCCCcchhhhhhhhHhhcccccCeEEEEecCeeeeeeecccCCcchhheeeccccch
Confidence 0467888999999999999999999999999999999999999999999997552 22 45566
Q ss_pred HHhhhhcccCCCCccEEEecCccchh
Q 010357 421 VHRVGRTARLGERGDSLLFLQPVEMD 446 (512)
Q Consensus 421 ~Q~~GRagR~g~~g~~~~~~~~~~~~ 446 (512)
.||.|||||. ++|.||-+++....+
T Consensus 523 ~QR~GRAGRv-~~G~cy~L~~~~~~~ 547 (924)
T KOG0920|consen 523 KQRRGRAGRV-RPGICYHLYTRSRYE 547 (924)
T ss_pred HHhcccccCc-cCCeeEEeechhhhh
Confidence 8999999999 889999999876543
No 115
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.91 E-value=4.9e-22 Score=202.60 Aligned_cols=127 Identities=18% Similarity=0.286 Sum_probs=113.7
Q ss_pred CCchHHHHHHHHHhhhccccCceEEEEeecchhhhhHHHhhhhhcCCCCCCChhHHHhhhhccceeeecCCCCHHHHHHH
Q 010357 299 CGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTT 378 (512)
Q Consensus 299 ~~~k~~~l~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~l~g~~~~~~r~~~ 378 (512)
...++..+...+.... ..+.+++|||++++.++.+++.|... ++++..+||+++..+|..+
T Consensus 424 ~~~qi~~Ll~eI~~~~--~~g~~vLIf~~tk~~ae~L~~~L~~~-----------------gi~~~~lh~~~~~~eR~~~ 484 (655)
T TIGR00631 424 TDGQVDDLLSEIRQRV--ARNERVLVTTLTKKMAEDLTDYLKEL-----------------GIKVRYLHSEIDTLERVEI 484 (655)
T ss_pred ccchHHHHHHHHHHHH--cCCCEEEEEECCHHHHHHHHHHHhhh-----------------ccceeeeeCCCCHHHHHHH
Confidence 3456677777777653 44679999999999999999999987 7889999999999999999
Q ss_pred HHhhhcCCCcEEEeecccccCCCCCCCcEEEEeC-----CCCChhHHHHhhhhcccCCCCccEEEecCccch
Q 010357 379 FGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYD-----SAGEATEYVHRVGRTARLGERGDSLLFLQPVEM 445 (512)
Q Consensus 379 ~~~f~~~~~~vLvaT~~~~~Gldip~~~~VI~~~-----~p~s~~~~~Q~~GRagR~g~~g~~~~~~~~~~~ 445 (512)
++.|+.|++.|||||+.+++|+|+|++++||+++ .|.+..+|+||+||+||. ..|.+++|++..+.
T Consensus 485 l~~fr~G~i~VLV~t~~L~rGfDiP~v~lVvi~DadifG~p~~~~~~iqriGRagR~-~~G~vi~~~~~~~~ 555 (655)
T TIGR00631 485 IRDLRLGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVIMYADKITD 555 (655)
T ss_pred HHHHhcCCceEEEEcChhcCCeeeCCCcEEEEeCcccccCCCCHHHHHHHhcCCCCC-CCCEEEEEEcCCCH
Confidence 9999999999999999999999999999999988 799999999999999998 68999999887653
No 116
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=99.90 E-value=6e-24 Score=196.93 Aligned_cols=349 Identities=17% Similarity=0.167 Sum_probs=233.5
Q ss_pred ccccccCccCCcccCCCCHHHHHHHHHhcCCCCCcHHHHHHHHHhhcC---CCEEEEccCCChHhHHHHHHHHHHHhhcC
Q 010357 9 ETVKEIFASCSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSG---RHVLVNAATGTGKTVAYLAPIINHLQSYS 85 (512)
Q Consensus 9 ~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~Q~~~~~~~~~~---~~~lv~~pTGsGKT~~~~~~~~~~~~~~~ 85 (512)
++++|+++...|.+-...+++--.|+ +-..+||||+.++..+..+ ++.+++.|.|+|||++-..++...
T Consensus 273 eidyPlLeEYDFRND~~npdl~idLK---Pst~iRpYQEksL~KMFGNgRARSGiIVLPCGAGKtLVGvTAa~ti----- 344 (776)
T KOG1123|consen 273 EIDYPLLEEYDFRNDNVNPDLDIDLK---PSTQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVGVTAACTI----- 344 (776)
T ss_pred ccCchhhhhhccccCCCCCCCCcCcC---cccccCchHHHHHHHHhCCCcccCceEEEecCCCCceeeeeeeeee-----
Confidence 45888999999999888888877773 5668999999999988843 578999999999998855444332
Q ss_pred CCCCCCCCceEEEEcCcHHHHHHHHHHHHHHHhhcCCcceEEEeCCCchHHHHHHHcCCCCEEEeCChHHHHHHhh----
Q 010357 86 PRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKH---- 161 (512)
Q Consensus 86 ~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~---- 161 (512)
...+|++|.+-.-++||...++.|+...+ ..+..+.. +.++....++.|+|+|+..+..--++
T Consensus 345 -------kK~clvLcts~VSVeQWkqQfk~wsti~d-~~i~rFTs-----d~Ke~~~~~~gvvvsTYsMva~t~kRS~ea 411 (776)
T KOG1123|consen 345 -------KKSCLVLCTSAVSVEQWKQQFKQWSTIQD-DQICRFTS-----DAKERFPSGAGVVVTTYSMVAYTGKRSHEA 411 (776)
T ss_pred -------cccEEEEecCccCHHHHHHHHHhhcccCc-cceEEeec-----cccccCCCCCcEEEEeeehhhhcccccHHH
Confidence 45599999999999999999999875322 22333322 22334556788999999655331111
Q ss_pred ---cCCCcCCceeEEEEcchhHHHhcCchHHHHHHHHHhccCCCCCCCCCCcccccceeEEEEEEecchhhHHHHHhhc-
Q 010357 162 ---TSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISL- 237 (512)
Q Consensus 162 ---~~~~~~~~~~~lV~DEah~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~- 237 (512)
...+.-..++++++||+|.+...-|...+..+-.+++ +++|||+-..-+.+..+.+
T Consensus 412 ek~m~~l~~~EWGllllDEVHvvPA~MFRRVlsiv~aHcK--------------------LGLTATLvREDdKI~DLNFL 471 (776)
T KOG1123|consen 412 EKIMDFLRGREWGLLLLDEVHVVPAKMFRRVLSIVQAHCK--------------------LGLTATLVREDDKITDLNFL 471 (776)
T ss_pred HHHHHHHhcCeeeeEEeehhccchHHHHHHHHHHHHHHhh--------------------ccceeEEeecccccccccee
Confidence 0011124789999999998877667666666665554 8999999765554444332
Q ss_pred CCCeEEccCCCcCCCCccccccCCcccchhhhccCCCccccccccccccccce-eeeEEEecCCchHHHHHHHHHhhhcc
Q 010357 238 ETPVLIGLDEKKLPEDKSHVRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQL-VQRYVKVPCGSRLAVLLSILKHLFDT 316 (512)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~k~~~l~~~l~~~~~~ 316 (512)
-.|.+...++..+...+......-.+.++.-..+... ++ +..+. ......+-...|..+...+|+.+ .
T Consensus 472 IGPKlYEAnWmdL~~kGhIA~VqCaEVWCpMt~eFy~--------eY-L~~~t~kr~lLyvMNP~KFraCqfLI~~H--E 540 (776)
T KOG1123|consen 472 IGPKLYEANWMDLQKKGHIAKVQCAEVWCPMTPEFYR--------EY-LRENTRKRMLLYVMNPNKFRACQFLIKFH--E 540 (776)
T ss_pred ecchhhhccHHHHHhCCceeEEeeeeeecCCCHHHHH--------HH-HhhhhhhhheeeecCcchhHHHHHHHHHH--H
Confidence 3344444444433333322222111111110000000 00 00111 11223344556777776666655 3
Q ss_pred ccCceEEEEeecchhhhhHHHhhhhhcCCCCCCChhHHHhhhhccceeeecCCCCHHHHHHHHHhhhcC-CCcEEEeecc
Q 010357 317 EVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTE-KKALLLSTDV 395 (512)
Q Consensus 317 ~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~l~g~~~~~~r~~~~~~f~~~-~~~vLvaT~~ 395 (512)
..+.++|||..+.-....++-.+. -..+.|..++.+|.++++.|+-. .++-++-+.+
T Consensus 541 ~RgDKiIVFsDnvfALk~YAikl~----------------------KpfIYG~Tsq~ERm~ILqnFq~n~~vNTIFlSKV 598 (776)
T KOG1123|consen 541 RRGDKIIVFSDNVFALKEYAIKLG----------------------KPFIYGPTSQNERMKILQNFQTNPKVNTIFLSKV 598 (776)
T ss_pred hcCCeEEEEeccHHHHHHHHHHcC----------------------CceEECCCchhHHHHHHHhcccCCccceEEEeec
Confidence 467899999998877666655542 23468999999999999999954 5778899999
Q ss_pred cccCCCCCCCcEEEEeCCC-CChhHHHHhhhhcccCC
Q 010357 396 AARGLDFPKVKCIIQYDSA-GEATEYVHRVGRTARLG 431 (512)
Q Consensus 396 ~~~Gldip~~~~VI~~~~p-~s~~~~~Q~~GRagR~g 431 (512)
+...+|+|.++++|+.+.. .|..+-.||.||..|+.
T Consensus 599 gDtSiDLPEAnvLIQISSH~GSRRQEAQRLGRILRAK 635 (776)
T KOG1123|consen 599 GDTSIDLPEANVLIQISSHGGSRRQEAQRLGRILRAK 635 (776)
T ss_pred cCccccCCcccEEEEEcccccchHHHHHHHHHHHHHh
Confidence 9999999999999987754 47778899999999974
No 117
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.90 E-value=2.6e-22 Score=192.40 Aligned_cols=323 Identities=16% Similarity=0.192 Sum_probs=213.8
Q ss_pred CcHHHHHHHHHhhcCCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHHhhcC
Q 010357 42 PTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFH 121 (512)
Q Consensus 42 ~~~~Q~~~~~~~~~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~ 121 (512)
.+..+.+.+..+..++-+++++.||||||......+++.=+. .++.+-+--|.|..|..+++....-....-
T Consensus 357 vf~~R~~ll~~ir~n~vvvivgETGSGKTTQl~QyL~edGY~--------~~GmIGcTQPRRvAAiSVAkrVa~EM~~~l 428 (1042)
T KOG0924|consen 357 VFACRDQLLSVIRENQVVVIVGETGSGKTTQLAQYLYEDGYA--------DNGMIGCTQPRRVAAISVAKRVAEEMGVTL 428 (1042)
T ss_pred hHHHHHHHHHHHhhCcEEEEEecCCCCchhhhHHHHHhcccc--------cCCeeeecCchHHHHHHHHHHHHHHhCCcc
Confidence 567788888888888889999999999998865544443222 244566777999988888877655443211
Q ss_pred CcceEEEeCCCchHHHHHHHcCCCCEEEeCChHHHHHHhhcCCCcCCceeEEEEcchhHHHhcCchHHHHHHHHHhccCC
Q 010357 122 WIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILGSRN 201 (512)
Q Consensus 122 ~~~~~~~~~g~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lV~DEah~l~~~~~~~~~~~i~~~~~~~~ 201 (512)
...+++...-++... ....|-++|.+.|++-...... +.++.+||+||||.=.- ....+..+++..-+..
T Consensus 429 G~~VGYsIRFEdvT~------~~T~IkymTDGiLLrEsL~d~~--L~kYSviImDEAHERsl--NtDilfGllk~~larR 498 (1042)
T KOG0924|consen 429 GDTVGYSIRFEDVTS------EDTKIKYMTDGILLRESLKDRD--LDKYSVIIMDEAHERSL--NTDILFGLLKKVLARR 498 (1042)
T ss_pred ccccceEEEeeecCC------CceeEEEeccchHHHHHhhhhh--hhheeEEEechhhhccc--chHHHHHHHHHHHHhh
Confidence 123333222111111 1235889999999875544333 45899999999996211 1222223333222211
Q ss_pred CCCCCCCCcccccceeEEEEEEecchhhHHHHHhhcCCCeEEccCCCcCCCCccccccCCcccchhhhccCCCccccccc
Q 010357 202 IGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLPEDKSHVRFGSLESDVKEEVEHPSTTMRSTT 281 (512)
Q Consensus 202 ~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (512)
. +.++|++|||+.. ++|...+.+-| .+.+.....+
T Consensus 499 r------------dlKliVtSATm~a--~kf~nfFgn~p-~f~IpGRTyP------------------------------ 533 (1042)
T KOG0924|consen 499 R------------DLKLIVTSATMDA--QKFSNFFGNCP-QFTIPGRTYP------------------------------ 533 (1042)
T ss_pred c------------cceEEEeeccccH--HHHHHHhCCCc-eeeecCCccc------------------------------
Confidence 1 7899999999864 45555444333 3333333211
Q ss_pred cccccccceeeeEEEecCCchHHHHHHHHHhhhccccCceEEEEeecchhhhhHHHhhhhhcCCCCCCChhHHHhhhhcc
Q 010357 282 EDFKLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRC 361 (512)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 361 (512)
+.-.+...+.++-+.+.+.-.-++....+.+.++||....+..+..+..+........... ..+.
T Consensus 534 --------V~~~~~k~p~eDYVeaavkq~v~Ihl~~~~GdilIfmtGqediE~t~~~i~~~l~ql~~~~-------~~~L 598 (1042)
T KOG0924|consen 534 --------VEIMYTKTPVEDYVEAAVKQAVQIHLSGPPGDILIFMTGQEDIECTCDIIKEKLEQLDSAP-------TTDL 598 (1042)
T ss_pred --------eEEEeccCchHHHHHHHHhhheEeeccCCCCCEEEecCCCcchhHHHHHHHHHHHhhhcCC-------CCce
Confidence 1112223333344444443333444456668999999999988888777766532211110 0167
Q ss_pred ceeeecCCCCHHHHHHHHHhhhcCCCcEEEeecccccCCCCCCCcEEEEeC------------------CCCChhHHHHh
Q 010357 362 KTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYD------------------SAGEATEYVHR 423 (512)
Q Consensus 362 ~v~~l~g~~~~~~r~~~~~~f~~~~~~vLvaT~~~~~Gldip~~~~VI~~~------------------~p~s~~~~~Q~ 423 (512)
.|+.+.+.|+...+.++++.-..|..+++|||++++..+.+|++.+||..+ .|.|-..--||
T Consensus 599 ~vlpiYSQLp~dlQ~kiFq~a~~~vRK~IvATNIAETSLTi~gI~yVID~Gy~K~kvyn~~~G~D~L~~~pIS~AnA~QR 678 (1042)
T KOG0924|consen 599 AVLPIYSQLPADLQAKIFQKAEGGVRKCIVATNIAETSLTIPGIRYVIDTGYCKLKVYNPRIGMDALQIVPISQANADQR 678 (1042)
T ss_pred EEEeehhhCchhhhhhhcccCCCCceeEEEeccchhhceeecceEEEEecCceeeeecccccccceeEEEechhccchhh
Confidence 899999999999999999999999999999999999999999999999766 35577777899
Q ss_pred hhhcccCCCCccEEEecCcc
Q 010357 424 VGRTARLGERGDSLLFLQPV 443 (512)
Q Consensus 424 ~GRagR~g~~g~~~~~~~~~ 443 (512)
.|||||.| +|.|+-+|+.+
T Consensus 679 aGRAGRt~-pG~cYRlYTe~ 697 (1042)
T KOG0924|consen 679 AGRAGRTG-PGTCYRLYTED 697 (1042)
T ss_pred ccccCCCC-Ccceeeehhhh
Confidence 99999994 89999999864
No 118
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.90 E-value=4.7e-21 Score=177.34 Aligned_cols=345 Identities=17% Similarity=0.181 Sum_probs=227.5
Q ss_pred cccCccCCcccCCCCHHHHHHHHHhcCCCCCcHHHHHHHHHhhcCCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCC
Q 010357 12 KEIFASCSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRS 91 (512)
Q Consensus 12 ~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~ 91 (512)
.+.++-++|.+.+.++...+.++++-... .+..+.+.+..+.+++-++++|.||||||...-.++++.....
T Consensus 19 ~~~k~~Npf~~~p~s~rY~~ilk~R~~LP-vw~~k~~F~~~l~~nQ~~v~vGetgsGKttQiPq~~~~~~~~~------- 90 (699)
T KOG0925|consen 19 ENAKAINPFNGKPYSQRYYDILKKRRELP-VWEQKEEFLKLLLNNQIIVLVGETGSGKTTQIPQFVLEYELSH------- 90 (699)
T ss_pred chhhhcCCCCCCcCcHHHHHHHHHHhcCc-hHHhHHHHHHHHhcCceEEEEecCCCCccccCcHHHHHHHHhh-------
Confidence 45566899999999999999998775443 5666667777788888999999999999998877777776552
Q ss_pred CCceEEEEcCcHHHHHHHHHHHHHHHhh-cCCcceEEEeCCCchHHHHHHHcCCCCEEEeCChHHHHHHhhcCCCcCCce
Q 010357 92 SGTFALVLVPTRELCLQVYEILHKLLHR-FHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNL 170 (512)
Q Consensus 92 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~ 170 (512)
...+.+--|.|.-+.+++.....-..- .| ..+++...-++...-... +-++|.+.|++-.... -.++.+
T Consensus 91 -~~~v~CTQprrvaamsva~RVadEMDv~lG-~EVGysIrfEdC~~~~T~------Lky~tDgmLlrEams~--p~l~~y 160 (699)
T KOG0925|consen 91 -LTGVACTQPRRVAAMSVAQRVADEMDVTLG-EEVGYSIRFEDCTSPNTL------LKYCTDGMLLREAMSD--PLLGRY 160 (699)
T ss_pred -ccceeecCchHHHHHHHHHHHHHHhccccc-hhccccccccccCChhHH------HHHhcchHHHHHHhhC--cccccc
Confidence 244777788888888887665443321 11 122222211111111111 2245556655543332 245689
Q ss_pred eEEEEcchhHHHhcCchHHHHHHHHHhccCCCCCCCCCCcccccceeEEEEEEecchhhHHHHHhhcCCCeEEccCCCcC
Q 010357 171 RWIIFDEADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKL 250 (512)
Q Consensus 171 ~~lV~DEah~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (512)
+++|+||||.=.- -.+.+..+++..... .++.++|.+|||+.. .++...+.+.|. +.+.+..
T Consensus 161 ~viiLDeahERtl--ATDiLmGllk~v~~~------------rpdLk~vvmSatl~a--~Kfq~yf~n~Pl-l~vpg~~- 222 (699)
T KOG0925|consen 161 GVIILDEAHERTL--ATDILMGLLKEVVRN------------RPDLKLVVMSATLDA--EKFQRYFGNAPL-LAVPGTH- 222 (699)
T ss_pred cEEEechhhhhhH--HHHHHHHHHHHHHhh------------CCCceEEEeecccch--HHHHHHhCCCCe-eecCCCC-
Confidence 9999999996211 122333333333221 128899999999753 344444444444 3343321
Q ss_pred CCCccccccCCcccchhhhccCCCccccccccccccccceeeeEEEecCCchHHHHHHHHHhhhccccCceEEEEeecch
Q 010357 251 PEDKSHVRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCD 330 (512)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~lvf~~~~~ 330 (512)
| +...|......+.+++.+..+-++......+.++||....+
T Consensus 223 ------------------------------------P--vEi~Yt~e~erDylEaairtV~qih~~ee~GDilvFLtgee 264 (699)
T KOG0925|consen 223 ------------------------------------P--VEIFYTPEPERDYLEAAIRTVLQIHMCEEPGDILVFLTGEE 264 (699)
T ss_pred ------------------------------------c--eEEEecCCCChhHHHHHHHHHHHHHhccCCCCEEEEecCHH
Confidence 0 11122233445667777777777777777899999999999
Q ss_pred hhhhHHHhhhhhcCCCCCCChhHHHhhhhccceeeecCCCCHHHHHHHHHhhhcC-----CCcEEEeecccccCCCCCCC
Q 010357 331 AVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTE-----KKALLLSTDVAARGLDFPKV 405 (512)
Q Consensus 331 ~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~l~g~~~~~~r~~~~~~f~~~-----~~~vLvaT~~~~~Gldip~~ 405 (512)
+.+..++.+.... ..+....+..++..+| +.++..+++-.... ..+|+|+|++++..+.++++
T Consensus 265 eIe~aC~~i~re~--------~~L~~~~g~l~v~PLy----P~~qq~iFep~p~~~~~~~~RkvVvstniaetsltidgi 332 (699)
T KOG0925|consen 265 EIEDACRKISREV--------DNLGPQVGPLKVVPLY----PAQQQRIFEPAPEKRNGAYGRKVVVSTNIAETSLTIDGI 332 (699)
T ss_pred HHHHHHHHHHHHH--------HhhccccCCceEEecC----chhhccccCCCCcccCCCccceEEEEecchheeeeeccE
Confidence 9999888887652 2233334467788888 44455554443321 25699999999999999999
Q ss_pred cEEEEeC------------------CCCChhHHHHhhhhcccCCCCccEEEecCcc
Q 010357 406 KCIIQYD------------------SAGEATEYVHRVGRTARLGERGDSLLFLQPV 443 (512)
Q Consensus 406 ~~VI~~~------------------~p~s~~~~~Q~~GRagR~g~~g~~~~~~~~~ 443 (512)
.+||.-+ .|.|..+-.||.|||||. ++|.|+.+|++.
T Consensus 333 v~VIDpGf~kqkVYNPRIRvesllv~PISkasA~qR~gragrt-~pGkcfrLYte~ 387 (699)
T KOG0925|consen 333 VFVIDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT-RPGKCFRLYTEE 387 (699)
T ss_pred EEEecCchhhhcccCcceeeeeeeeccchHhHHHHHhhhccCC-CCCceEEeecHH
Confidence 9999765 456778889999999998 799999999854
No 119
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=99.89 E-value=3.2e-21 Score=191.21 Aligned_cols=337 Identities=19% Similarity=0.174 Sum_probs=227.2
Q ss_pred HhcCCCCCcHHHHHHHHHhhcCCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcHHHHHHHHHHHH
Q 010357 35 ERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILH 114 (512)
Q Consensus 35 ~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~ 114 (512)
..+|+. |++.|.-+.-.+++| -+..+.||+|||+++.+|++..... |..+.+++|+-.||.+-++++.
T Consensus 73 R~lg~r-~ydvQlig~l~Ll~G--~VaEM~TGEGKTLvA~l~a~l~AL~---------G~~VhvvT~NdyLA~RDae~m~ 140 (764)
T PRK12326 73 RTLGLR-PFDVQLLGALRLLAG--DVIEMATGEGKTLAGAIAAAGYALQ---------GRRVHVITVNDYLARRDAEWMG 140 (764)
T ss_pred HHcCCC-cchHHHHHHHHHhCC--CcccccCCCCHHHHHHHHHHHHHHc---------CCCeEEEcCCHHHHHHHHHHHH
Confidence 345775 999999999888887 4779999999999999999887766 8889999999999999999999
Q ss_pred HHHhhcCCcceEEEeCCCchHHHHHHHcCCCCEEEeCChHH-HHHHhh-----cCCCcCCceeEEEEcchhHHHhcC---
Q 010357 115 KLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRL-LDHLKH-----TSSFLHTNLRWIIFDEADRILELG--- 185 (512)
Q Consensus 115 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~Iiv~Tp~~l-~~~l~~-----~~~~~~~~~~~lV~DEah~l~~~~--- 185 (512)
.+...+| +.++...++..... +... ..+||+++|..-+ ++.|.. ........+.+.|+||+|.++-..
T Consensus 141 ~ly~~LG-Lsvg~i~~~~~~~e-rr~a-Y~~DItYgTn~e~gFDyLRDnm~~~~~~~v~R~~~faIVDEvDSiLIDeArt 217 (764)
T PRK12326 141 PLYEALG-LTVGWITEESTPEE-RRAA-YACDVTYASVNEIGFDVLRDQLVTDVADLVSPNPDVAIIDEADSVLVDEALV 217 (764)
T ss_pred HHHHhcC-CEEEEECCCCCHHH-HHHH-HcCCCEEcCCcccccccchhhhccChHhhcCCccceeeecchhhheeccccC
Confidence 9999887 45566655544433 3332 3579999998765 233322 122234568899999999843210
Q ss_pred ------------chHHHHHHHHHhccC--------------------------------CC-------------------
Q 010357 186 ------------FGKEIEEILDILGSR--------------------------------NI------------------- 202 (512)
Q Consensus 186 ------------~~~~~~~i~~~~~~~--------------------------------~~------------------- 202 (512)
....+..+...+... ..
T Consensus 218 PLiISg~~~~~~~y~~~~~~v~~L~~~~dy~ide~~k~v~LTe~G~~~~e~~l~~~~ly~~~~~~~~~~~i~~AL~A~~l 297 (764)
T PRK12326 218 PLVLAGSTPGEAPRGEIAELVRRLREGKDYEIDDDGRNVHLTDKGARKVEKALGGIDLYSEEHVGTTLTQVNVALHAHAL 297 (764)
T ss_pred ceeeeCCCcchhHHHHHHHHHHhcCcCCcEEEEcCCCeeEecHHHHHHHHHHcCCccccCcchhHHHHHHHHHHHHHHHH
Confidence 111111111111100 00
Q ss_pred ---------------------CCCC--CCCc--------------c---------------cccceeEEEEEEecchhhH
Q 010357 203 ---------------------GSIG--EGNE--------------V---------------SNVKRQNLLLSATLNEKVN 230 (512)
Q Consensus 203 ---------------------~~~~--~~~~--------------~---------------~~~~~~~i~~SAT~~~~~~ 230 (512)
+... ..++ . -..-.++.+||+|......
T Consensus 298 ~~~d~dYiV~dgeV~iVDe~TGRvm~grrwsdGLHQaIEaKE~v~i~~e~~t~AsIT~QnfFr~Y~kLsGMTGTa~t~~~ 377 (764)
T PRK12326 298 LQRDVHYIVRDGKVHLINASRGRIAQLQRWPDGLQAAVEAKEGLETTETGEVLDTITVQALIGRYPTVCGMTGTAVAAGE 377 (764)
T ss_pred HhcCCcEEEECCEEEEEECCCCCcCCCCccChHHHHHHHHHcCCCCCCCceeeehhhHHHHHHhcchheeecCCChhHHH
Confidence 0000 0000 0 0111257788888876666
Q ss_pred HHHHhhcCCCeEEccCCCcCCCCccccccCCcccchhhhccCCCccccccccccccccceeeeEEEecCCchHHHHHHHH
Q 010357 231 HLAKISLETPVLIGLDEKKLPEDKSHVRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCGSRLAVLLSIL 310 (512)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l 310 (512)
.+.+.+.-+...+ ....+ ..+.-....+.....+|+.++++.+
T Consensus 378 Ef~~iY~l~Vv~I-Ptnkp------------------------------------~~R~d~~d~iy~t~~~k~~Aii~ei 420 (764)
T PRK12326 378 QLRQFYDLGVSVI-PPNKP------------------------------------NIREDEADRVYATAAEKNDAIVEHI 420 (764)
T ss_pred HHHHHhCCcEEEC-CCCCC------------------------------------ceeecCCCceEeCHHHHHHHHHHHH
Confidence 6666554433322 11110 0111112233445567888898888
Q ss_pred HhhhccccCceEEEEeecchhhhhHHHhhhhhcCCCCCCChhHHHhhhhccceeeecCCCCHHHHHHHHHhhhcCCCcEE
Q 010357 311 KHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALL 390 (512)
Q Consensus 311 ~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~l~g~~~~~~r~~~~~~f~~~~~~vL 390 (512)
.... ..+.|+||.+.++..++.++..|.+. +++...+++.-...+-..+-+.=+. ..|-
T Consensus 421 ~~~~--~~GrPVLVgt~sI~~SE~ls~~L~~~-----------------gI~h~vLNAk~~~~EA~IIa~AG~~--gaVT 479 (764)
T PRK12326 421 AEVH--ETGQPVLVGTHDVAESEELAERLRAA-----------------GVPAVVLNAKNDAEEARIIAEAGKY--GAVT 479 (764)
T ss_pred HHHH--HcCCCEEEEeCCHHHHHHHHHHHHhC-----------------CCcceeeccCchHhHHHHHHhcCCC--CcEE
Confidence 8773 56789999999999999999999988 7777888876443333333332233 3799
Q ss_pred EeecccccCCCCC---------------CCcEEEEeCCCCChhHHHHhhhhcccCCCCccEEEecCccc
Q 010357 391 LSTDVAARGLDFP---------------KVKCIIQYDSAGEATEYVHRVGRTARLGERGDSLLFLQPVE 444 (512)
Q Consensus 391 vaT~~~~~Gldip---------------~~~~VI~~~~p~s~~~~~Q~~GRagR~g~~g~~~~~~~~~~ 444 (512)
|||+++++|.|+. +-=+||-...+.|..--.|..||+||.|.+|.+..|++-+|
T Consensus 480 IATNMAGRGTDIkLg~~~~~~~~~V~~~GGLhVIgTerheSrRID~QLrGRaGRQGDpGss~f~lSleD 548 (764)
T PRK12326 480 VSTQMAGRGTDIRLGGSDEADRDRVAELGGLHVIGTGRHRSERLDNQLRGRAGRQGDPGSSVFFVSLED 548 (764)
T ss_pred EEecCCCCccCeecCCCcccchHHHHHcCCcEEEeccCCchHHHHHHHhcccccCCCCCceeEEEEcch
Confidence 9999999999985 22279999999999999999999999999999999998777
No 120
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=99.89 E-value=6.8e-21 Score=190.96 Aligned_cols=373 Identities=19% Similarity=0.222 Sum_probs=215.2
Q ss_pred CCcHHHHHHHHHhhc---C-------CCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcHHHHHHHH
Q 010357 41 APTKVQAQAIPVILS---G-------RHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVY 110 (512)
Q Consensus 41 ~~~~~Q~~~~~~~~~---~-------~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~ 110 (512)
.++|||++++..+.. | ...|+...+|+|||+.....+-..+.+... .. .-..+.|||+|. .|+..|.
T Consensus 238 ~LrPHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKTlq~IsflwtlLrq~P~-~~-~~~~k~lVV~P~-sLv~nWk 314 (776)
T KOG0390|consen 238 ILRPHQREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKTLQCISFIWTLLRQFPQ-AK-PLINKPLVVAPS-SLVNNWK 314 (776)
T ss_pred hcCchHHHHHHHHHhhhhcccccCCCCceEeeCCCCcchHHHHHHHHHHHHHhCcC-cc-ccccccEEEccH-HHHHHHH
Confidence 489999999988653 2 236888899999999987777666665221 10 123779999999 7888899
Q ss_pred HHHHHHHhhcCCcceEEEeCCCch--HHHHHHH-----cCCCCEEEeCChHHHHHHhhcCCCcCCceeEEEEcchhHHHh
Q 010357 111 EILHKLLHRFHWIVPGYVMGGENR--SKEKARL-----RKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILE 183 (512)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~g~~~--~~~~~~~-----~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lV~DEah~l~~ 183 (512)
++|.+|... ..+..-.++++... ......+ .....|.+.+++.+.+.... +....++++|+||.|++.+
T Consensus 315 kEF~KWl~~-~~i~~l~~~~~~~~~w~~~~sil~~~~~~~~~~vli~sye~~~~~~~~---il~~~~glLVcDEGHrlkN 390 (776)
T KOG0390|consen 315 KEFGKWLGN-HRINPLDFYSTKKSSWIKLKSILFLGYKQFTTPVLIISYETASDYCRK---ILLIRPGLLVCDEGHRLKN 390 (776)
T ss_pred HHHHHhccc-cccceeeeecccchhhhhhHHHHHhhhhheeEEEEeccHHHHHHHHHH---HhcCCCCeEEECCCCCccc
Confidence 999998653 23444445555443 1111111 11246888999999765554 2234789999999998755
Q ss_pred cCchHHHHHHHHHhccCCCCCCCCCCcccccceeEEEEEEecc-hhhHHHHH-hhcCCCeEEccCCCc------------
Q 010357 184 LGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLN-EKVNHLAK-ISLETPVLIGLDEKK------------ 249 (512)
Q Consensus 184 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~-~~~~~~~~-~~~~~~~~~~~~~~~------------ 249 (512)
-...+...+..+. ..+.|++|+|+- +++..++. +.+..|.........
T Consensus 391 --~~s~~~kaL~~l~----------------t~rRVLLSGTp~QNdl~EyFnlL~fvrP~~Lgs~~sf~k~~~~~i~~~~ 452 (776)
T KOG0390|consen 391 --SDSLTLKALSSLK----------------TPRRVLLTGTPIQNDLKEYFNLLDFVRPGFLGSISSFKKKFEIPILRGR 452 (776)
T ss_pred --hhhHHHHHHHhcC----------------CCceEEeeCCcccccHHHHHHHHhhcChhhccchHHHHHHhhccccccc
Confidence 3445555555554 567799999984 33333333 223333322221110
Q ss_pred -------------------------------------CCCCccccccCCcccchhhhccCCCc-----------------
Q 010357 250 -------------------------------------LPEDKSHVRFGSLESDVKEEVEHPST----------------- 275 (512)
Q Consensus 250 -------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~----------------- 275 (512)
+|.....+.+-...............
T Consensus 453 ~~~~s~e~~~~~~rl~eL~~~t~~fi~rrt~~il~k~LP~k~e~vv~~n~t~~Q~~~~~~l~~~~~~~~~~~~~l~~~~~ 532 (776)
T KOG0390|consen 453 DADASEEDREREERLQELRELTNKFILRRTGDILLKYLPGKYEYVVFCNPTPIQKELYKKLLDSMKMRTLKGYALELITK 532 (776)
T ss_pred CCCcchhhhhhHHHHHHHHHHHHhheeecccchhhhhCCCceeEEEEeCCcHHHHHHHHHHHHHHHhhhhhcchhhHHHH
Confidence 00000000000000000000000000
Q ss_pred ----------cccc----cccccccccc------eeeeEEEecCCchHHHHHHHHHhhhccccCceEEEEeecchhhhhH
Q 010357 276 ----------TMRS----TTEDFKLPAQ------LVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFH 335 (512)
Q Consensus 276 ----------~~~~----~~~~~~~~~~------~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~lvf~~~~~~~~~l 335 (512)
.... .......+.. ............|+..+..++.... .....++.+..|-+...+.+
T Consensus 533 L~k~cnhP~L~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ks~kl~~L~~ll~~~~-ek~~~~~v~Isny~~tldl~ 611 (776)
T KOG0390|consen 533 LKKLCNHPSLLLLCEKTEKEKAFKNPALLLDPGKLKLDAGDGSKSGKLLVLVFLLEVIR-EKLLVKSVLISNYTQTLDLF 611 (776)
T ss_pred HHHHhcCHHhhcccccccccccccChHhhhcccccccccccchhhhHHHHHHHHHHHHh-hhcceEEEEeccHHHHHHHH
Confidence 0000 0000000000 0000000111234444444443321 11112333333333333333
Q ss_pred HHhhhhhcCCCCCCChhHHHhhhhccceeeecCCCCHHHHHHHHHhhhcCCCc---EEEeecccccCCCCCCCcEEEEeC
Q 010357 336 YSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKA---LLLSTDVAARGLDFPKVKCIIQYD 412 (512)
Q Consensus 336 ~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~l~g~~~~~~r~~~~~~f~~~~~~---vLvaT~~~~~Gldip~~~~VI~~~ 412 (512)
...++.. |+.++.+||.|+..+|+.+++.|.+.... .|.+|-+.++|+++-+++.||.+|
T Consensus 612 e~~~~~~-----------------g~~~~rLdG~~~~~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsRlil~D 674 (776)
T KOG0390|consen 612 EQLCRWR-----------------GYEVLRLDGKTSIKQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASRLILFD 674 (776)
T ss_pred HHHHhhc-----------------CceEEEEcCCCchHHHHHHHHhccCCCCCceEEEEecccccCceeecccceEEEeC
Confidence 3333333 88999999999999999999999975433 466788999999999999999999
Q ss_pred CCCChhHHHHhhhhcccCCCCccEEEe--cC---ccchhHHHHHHHcCC
Q 010357 413 SAGEATEYVHRVGRTARLGERGDSLLF--LQ---PVEMDYLQDLEKHGV 456 (512)
Q Consensus 413 ~p~s~~~~~Q~~GRagR~g~~g~~~~~--~~---~~~~~~~~~l~~~~~ 456 (512)
++|||+.-.|+++||.|.||+..|++| ++ .++..+-+...+.++
T Consensus 675 ~dWNPa~d~QAmaR~~RdGQKk~v~iYrLlatGtiEEk~~qrq~~K~~l 723 (776)
T KOG0390|consen 675 PDWNPAVDQQAMARAWRDGQKKPVYIYRLLATGTIEEKIYQRQTHKEGL 723 (776)
T ss_pred CCCCchhHHHHHHHhccCCCcceEEEEEeecCCCchHHHHHHHHHhhhh
Confidence 999999999999999999999988877 32 344555555555444
No 121
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=99.88 E-value=3.9e-21 Score=187.89 Aligned_cols=359 Identities=19% Similarity=0.258 Sum_probs=223.0
Q ss_pred CCcHHHHHHHHHhh----cCCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHH
Q 010357 41 APTKVQAQAIPVIL----SGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKL 116 (512)
Q Consensus 41 ~~~~~Q~~~~~~~~----~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 116 (512)
.+++||++++..+. ++...|+...+|.|||...+..+.....+. + -...+|||||. .+..||.+++..|
T Consensus 205 ~Lf~yQreGV~WL~~L~~q~~GGILgDeMGLGKTIQiisFLaaL~~S~--k----~~~paLIVCP~-Tii~qW~~E~~~w 277 (923)
T KOG0387|consen 205 KLFPYQREGVQWLWELYCQRAGGILGDEMGLGKTIQIISFLAALHHSG--K----LTKPALIVCPA-TIIHQWMKEFQTW 277 (923)
T ss_pred HhhHHHHHHHHHHHHHHhccCCCeecccccCccchhHHHHHHHHhhcc--c----ccCceEEEccH-HHHHHHHHHHHHh
Confidence 46899999987655 566789999999999988766655443331 1 13569999999 6788999999999
Q ss_pred HhhcCCcceEEEeCCCch--------HHHHHH-H----cCCCCEEEeCChHHHHHHhhcCCCcCCceeEEEEcchhHHHh
Q 010357 117 LHRFHWIVPGYVMGGENR--------SKEKAR-L----RKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILE 183 (512)
Q Consensus 117 ~~~~~~~~~~~~~~g~~~--------~~~~~~-~----~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lV~DEah~l~~ 183 (512)
... ..+..+++..+. ...++. + .....|+++|++.+.-. . ..+.--.++++|+||.|++.+
T Consensus 278 ~p~---~rv~ilh~t~s~~r~~~~~~~~~~~~~L~r~~~~~~~ilitty~~~r~~--~-d~l~~~~W~y~ILDEGH~IrN 351 (923)
T KOG0387|consen 278 WPP---FRVFILHGTGSGARYDASHSSHKKDKLLIRKVATDGGILITTYDGFRIQ--G-DDLLGILWDYVILDEGHRIRN 351 (923)
T ss_pred Ccc---eEEEEEecCCcccccccchhhhhhhhhheeeecccCcEEEEehhhhccc--C-cccccccccEEEecCcccccC
Confidence 754 333344433221 111111 1 12356999999887442 1 222223689999999999877
Q ss_pred cCchHHHHHHHHHhccCCCCCCCCCCcccccceeEEEEEEecchh-hHHHHHh-----------------hcCCCeEEcc
Q 010357 184 LGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEK-VNHLAKI-----------------SLETPVLIGL 245 (512)
Q Consensus 184 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~-~~~~~~~-----------------~~~~~~~~~~ 245 (512)
. ...+...+..++ ..+.|++|+|+-.+ +..+-.+ .+..|+..+-
T Consensus 352 p--ns~islackki~----------------T~~RiILSGTPiQNnL~ELwsLfDFv~PG~Lgt~~~F~~~f~~pI~~Gg 413 (923)
T KOG0387|consen 352 P--NSKISLACKKIR----------------TVHRIILSGTPIQNNLTELWSLFDFVFPGKLGTLPVFQQNFEHPINRGG 413 (923)
T ss_pred C--ccHHHHHHHhcc----------------ccceEEeeCccccchHHHHHHHhhhccCCcccchHHHHhhhhhheeccc
Confidence 4 344555555555 44557777776322 1111110 0011111111
Q ss_pred CC-----------------------------------CcCCCCccccccCCccc--------------------------
Q 010357 246 DE-----------------------------------KKLPEDKSHVRFGSLES-------------------------- 264 (512)
Q Consensus 246 ~~-----------------------------------~~~~~~~~~~~~~~~~~-------------------------- 264 (512)
+. ..++.....+.+-.+..
T Consensus 414 yaNAs~~qv~~aykca~~Lr~lI~PylLRR~K~dv~~~~Lp~K~E~VlfC~LT~~QR~~Y~~fl~s~~v~~i~ng~~~~l 493 (923)
T KOG0387|consen 414 YANASPRQVQTAYKCAVALRDLISPYLLRRMKSDVKGLKLPKKEEIVLFCRLTKLQRRLYQRFLNSSEVNKILNGKRNCL 493 (923)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhccCCCccceEEEEeccHHHHHHHHHHhhhHHHHHHHcCCccce
Confidence 00 00111111111100000
Q ss_pred ---chhhh-ccCCCccccccccccccccceeeeE-EEecCCchHHHHHHHHHhhhccccCceEEEEeecchhhhhHHHhh
Q 010357 265 ---DVKEE-VEHPSTTMRSTTEDFKLPAQLVQRY-VKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLL 339 (512)
Q Consensus 265 ---~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~k~~~l~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l 339 (512)
..... -.|+........ ...-...+ -....+.|+.++..++.... ..+.++++|..++.....+-..|
T Consensus 494 ~Gi~iLrkICnHPdll~~~~~-----~~~~~~D~~g~~k~sGKm~vl~~ll~~W~--kqg~rvllFsqs~~mLdilE~fL 566 (923)
T KOG0387|consen 494 SGIDILRKICNHPDLLDRRDE-----DEKQGPDYEGDPKRSGKMKVLAKLLKDWK--KQGDRVLLFSQSRQMLDILESFL 566 (923)
T ss_pred echHHHHhhcCCcccccCccc-----ccccCCCcCCChhhcchHHHHHHHHHHHh--hCCCEEEEehhHHHHHHHHHHHH
Confidence 00000 001111000000 00000011 22334578899999998875 34679999999999999888888
Q ss_pred hhhcCCCCCCChhHHHhhhhccceeeecCCCCHHHHHHHHHhhhcCCC-c-EEEeecccccCCCCCCCcEEEEeCCCCCh
Q 010357 340 SEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKK-A-LLLSTDVAARGLDFPKVKCIIQYDSAGEA 417 (512)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~v~~l~g~~~~~~r~~~~~~f~~~~~-~-vLvaT~~~~~Gldip~~~~VI~~~~p~s~ 417 (512)
... .++....+.|..+...|..++++|.++.. . .|++|.+.+.|+|+.+++-||.||+.|+|
T Consensus 567 ~~~----------------~~ysylRmDGtT~~~~R~~lVd~Fne~~s~~VFLLTTrvGGLGlNLTgAnRVIIfDPdWNP 630 (923)
T KOG0387|consen 567 RRA----------------KGYSYLRMDGTTPAALRQKLVDRFNEDESIFVFLLTTRVGGLGLNLTGANRVIIFDPDWNP 630 (923)
T ss_pred Hhc----------------CCceEEEecCCCccchhhHHHHhhcCCCceEEEEEEecccccccccccCceEEEECCCCCC
Confidence 742 18899999999999999999999998764 3 58889999999999999999999999999
Q ss_pred hHHHHhhhhcccCCCCccEEEe--cCc---cchhHHHHHHH
Q 010357 418 TEYVHRVGRTARLGERGDSLLF--LQP---VEMDYLQDLEK 453 (512)
Q Consensus 418 ~~~~Q~~GRagR~g~~g~~~~~--~~~---~~~~~~~~l~~ 453 (512)
..=.|..-||.|.|++..+++| ++. ++.-|.+.+.+
T Consensus 631 StD~QAreRawRiGQkkdV~VYRL~t~gTIEEkiY~rQI~K 671 (923)
T KOG0387|consen 631 STDNQARERAWRIGQKKDVVVYRLMTAGTIEEKIYHRQIFK 671 (923)
T ss_pred ccchHHHHHHHhhcCccceEEEEEecCCcHHHHHHHHHHHH
Confidence 9999999999999998766655 443 23344444444
No 122
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.88 E-value=4.8e-21 Score=195.31 Aligned_cols=124 Identities=21% Similarity=0.284 Sum_probs=111.1
Q ss_pred CchHHHHHHHHHhhhccccCceEEEEeecchhhhhHHHhhhhhcCCCCCCChhHHHhhhhccceeeecCCCCHHHHHHHH
Q 010357 300 GSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTF 379 (512)
Q Consensus 300 ~~k~~~l~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~l~g~~~~~~r~~~~ 379 (512)
.+|..++.+.+.... ..+.++||||+|+..++.+++.|... ++++..+|+ .+.+|+..+
T Consensus 581 ~eK~~Ali~~I~~~~--~~grpVLIft~Sve~sE~Ls~~L~~~-----------------gI~h~vLna--kq~~REa~I 639 (1025)
T PRK12900 581 REKYNAIVLKVEELQ--KKGQPVLVGTASVEVSETLSRMLRAK-----------------RIAHNVLNA--KQHDREAEI 639 (1025)
T ss_pred HHHHHHHHHHHHHHh--hCCCCEEEEeCcHHHHHHHHHHHHHc-----------------CCCceeecC--CHHHhHHHH
Confidence 468888888887653 45789999999999999999999988 788889997 488999999
Q ss_pred HhhhcCCCcEEEeecccccCCCCC---CCc-----EEEEeCCCCChhHHHHhhhhcccCCCCccEEEecCccc
Q 010357 380 GAFKTEKKALLLSTDVAARGLDFP---KVK-----CIIQYDSAGEATEYVHRVGRTARLGERGDSLLFLQPVE 444 (512)
Q Consensus 380 ~~f~~~~~~vLvaT~~~~~Gldip---~~~-----~VI~~~~p~s~~~~~Q~~GRagR~g~~g~~~~~~~~~~ 444 (512)
..|..+...|+|||++++||+|++ ++. +||.+..|.|...|.|+.||+||.|.+|.++.|++.+|
T Consensus 640 ia~AG~~g~VtIATNMAGRGtDIkl~~~V~~vGGL~VIgterhes~Rid~Ql~GRtGRqGdpGsS~ffvSleD 712 (1025)
T PRK12900 640 VAEAGQKGAVTIATNMAGRGTDIKLGEGVRELGGLFILGSERHESRRIDRQLRGRAGRQGDPGESVFYVSLED 712 (1025)
T ss_pred HHhcCCCCeEEEeccCcCCCCCcCCccchhhhCCceeeCCCCCchHHHHHHHhhhhhcCCCCcceEEEechhH
Confidence 999999999999999999999998 443 45899999999999999999999999999999999877
No 123
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.87 E-value=6.3e-20 Score=195.70 Aligned_cols=123 Identities=20% Similarity=0.312 Sum_probs=86.6
Q ss_pred HHHHHHHHHhhhccccCceEEEEeecchhhhhHHHhhhhhcCCCCCCChhHHHhhhhccceeeecCCCCHHHHHHHHHhh
Q 010357 303 LAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAF 382 (512)
Q Consensus 303 ~~~l~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~l~g~~~~~~r~~~~~~f 382 (512)
...+...+.++... .+++++||++|.+..+.++..|...... .+..+. ..+.. ..|..++++|
T Consensus 659 ~~~ia~~i~~l~~~-~~g~~LVlftS~~~l~~v~~~L~~~~~~-------------~~~~~l--~q~~~-~~r~~ll~~F 721 (850)
T TIGR01407 659 AQEIASYIIEITAI-TSPKILVLFTSYEMLHMVYDMLNELPEF-------------EGYEVL--AQGIN-GSRAKIKKRF 721 (850)
T ss_pred HHHHHHHHHHHHHh-cCCCEEEEeCCHHHHHHHHHHHhhhccc-------------cCceEE--ecCCC-ccHHHHHHHH
Confidence 34556666665433 3579999999999999999998753110 022322 23332 5789999999
Q ss_pred hcCCCcEEEeecccccCCCCCCCc--EEEEeCCCCC------------------------------hhHHHHhhhhcccC
Q 010357 383 KTEKKALLLSTDVAARGLDFPKVK--CIIQYDSAGE------------------------------ATEYVHRVGRTARL 430 (512)
Q Consensus 383 ~~~~~~vLvaT~~~~~Gldip~~~--~VI~~~~p~s------------------------------~~~~~Q~~GRagR~ 430 (512)
++++..||+||+.+.+|||+|+.. .||..+.|.. ...+.|.+||.-|.
T Consensus 722 ~~~~~~iLlgt~sf~EGVD~~g~~l~~viI~~LPf~~p~dp~~~a~~~~~~~~g~~~f~~~~lP~A~~~l~Qa~GRlIRs 801 (850)
T TIGR01407 722 NNGEKAILLGTSSFWEGVDFPGNGLVCLVIPRLPFANPKHPLTKKYWQKLEQEGKNPFYDYVLPMAIIRLRQALGRLIRR 801 (850)
T ss_pred HhCCCeEEEEcceeecccccCCCceEEEEEeCCCCCCCCCHHHHHHHHHHHHhcCCchHHhhHHHHHHHHHHhhcccccc
Confidence 999999999999999999999855 5777776531 12347999999998
Q ss_pred CCCccEEEecCc
Q 010357 431 GERGDSLLFLQP 442 (512)
Q Consensus 431 g~~g~~~~~~~~ 442 (512)
....-++++++.
T Consensus 802 ~~D~G~v~ilD~ 813 (850)
T TIGR01407 802 ENDRGSIVILDR 813 (850)
T ss_pred CCceEEEEEEcc
Confidence 765445555553
No 124
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.87 E-value=7e-20 Score=188.52 Aligned_cols=123 Identities=20% Similarity=0.303 Sum_probs=110.7
Q ss_pred CchHHHHHHHHHhhhccccCceEEEEeecchhhhhHHHhhhhhcCCCCCCChhHHHhhhhccceeeecCCCCHHHHHHHH
Q 010357 300 GSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTF 379 (512)
Q Consensus 300 ~~k~~~l~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~l~g~~~~~~r~~~~ 379 (512)
..++..+...+.... ..+.+++|||+++..++.+++.|... ++++..+||+++..+|..++
T Consensus 429 ~~q~~~L~~~L~~~~--~~g~~viIf~~t~~~ae~L~~~L~~~-----------------gi~~~~~h~~~~~~~R~~~l 489 (652)
T PRK05298 429 KGQVDDLLSEIRKRV--AKGERVLVTTLTKRMAEDLTDYLKEL-----------------GIKVRYLHSDIDTLERVEII 489 (652)
T ss_pred cccHHHHHHHHHHHH--hCCCEEEEEeCCHHHHHHHHHHHhhc-----------------ceeEEEEECCCCHHHHHHHH
Confidence 345667777777653 34689999999999999999999887 88899999999999999999
Q ss_pred HhhhcCCCcEEEeecccccCCCCCCCcEEEEeCC-----CCChhHHHHhhhhcccCCCCccEEEecCc
Q 010357 380 GAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDS-----AGEATEYVHRVGRTARLGERGDSLLFLQP 442 (512)
Q Consensus 380 ~~f~~~~~~vLvaT~~~~~Gldip~~~~VI~~~~-----p~s~~~~~Q~~GRagR~g~~g~~~~~~~~ 442 (512)
+.|+.|...|+|||+.+++|+|+|++++||+++. |.+..+|+||+||+||. ..|.+++|++.
T Consensus 490 ~~f~~g~i~vlV~t~~L~rGfdlp~v~lVii~d~eifG~~~~~~~yiqr~GR~gR~-~~G~~i~~~~~ 556 (652)
T PRK05298 490 RDLRLGEFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVILYADK 556 (652)
T ss_pred HHHHcCCceEEEEeCHHhCCccccCCcEEEEeCCcccccCCCHHHHHHHhccccCC-CCCEEEEEecC
Confidence 9999999999999999999999999999998885 78999999999999996 78999999984
No 125
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.87 E-value=1.1e-21 Score=184.66 Aligned_cols=368 Identities=13% Similarity=0.083 Sum_probs=250.4
Q ss_pred HHHHHHHHhcCCCCCcHHHHHHHHHhhcCCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcHHHHH
Q 010357 28 TLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCL 107 (512)
Q Consensus 28 ~~~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~ 107 (512)
++...+.+.+.-++...+|.+++..+-+|++.++.-.|.+||++++.+.+...+.. ......+++.|+++++.
T Consensus 273 E~~~~~~~~~~~E~~~~~~~~~~~~~~~G~~~~~~~~~~~GK~~~~~~~s~~~~~~-------~~~s~~~~~~~~~~~~~ 345 (1034)
T KOG4150|consen 273 ESIRSLLNKNTGESGIAISLELLKFASEGRADGGNEARQAGKGTCPTSGSRKFQTL-------CHATNSLLPSEMVEHLR 345 (1034)
T ss_pred HHHHHHHhcccccchhhhhHHHHhhhhhcccccccchhhcCCccCcccchhhhhhc-------CcccceecchhHHHHhh
Confidence 45555656666667899999999999999999999999999999998887776654 33566899999999998
Q ss_pred HHHHHHHHHHhhcCCc--ceEEEeCCCchHHHHHHHcCCCCEEEeCChHHHHHHhhcCCC---cCCceeEEEEcchhHHH
Q 010357 108 QVYEILHKLLHRFHWI--VPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSF---LHTNLRWIIFDEADRIL 182 (512)
Q Consensus 108 q~~~~~~~~~~~~~~~--~~~~~~~g~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~---~~~~~~~lV~DEah~l~ 182 (512)
...+.+.-.....+.. .+.-.+.|.+........+.+.+++++.|............. .+-...++++||+|.+.
T Consensus 346 ~~~~~~~V~~~~I~~~K~A~V~~~D~~sE~~~~A~~R~~~~~~~s~~~~~~s~~L~~~~~~~~~~~~~~~~~~~~~~~Y~ 425 (1034)
T KOG4150|consen 346 NGSKGQVVHVEVIKARKSAYVEMSDKLSETTKSALKRIGLNTLYSHQAEAISAALAKSLCYNVPVFEELCKDTNSCALYL 425 (1034)
T ss_pred ccCCceEEEEEehhhhhcceeecccCCCchhHHHHHhcCcceeecCHHHHHHHHhhhccccccHHHHHHHhcccceeeee
Confidence 8766554443322222 223344566666666777788999999998876544321111 11135679999999755
Q ss_pred hcCchH----HHHHHHHHhccCCCCCCCCCCcccccceeEEEEEEecchhhHHHHHhhc-CCCeEEccCCCcCCCCcccc
Q 010357 183 ELGFGK----EIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISL-ETPVLIGLDEKKLPEDKSHV 257 (512)
Q Consensus 183 ~~~~~~----~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 257 (512)
.. ++. +++.+++.++... .+...+++-.|||...+.+.....+. +...++..+..+..... .+
T Consensus 426 ~~-~~~~~~~~~R~L~~L~~~F~----------~~~~~~~~~~~~~~K~~~~~~~~~~~~~E~~Li~~DGSPs~~K~-~V 493 (1034)
T KOG4150|consen 426 FP-TKALAQDQLRALSDLIKGFE----------ASINMGVYDGDTPYKDRTRLRSELANLSELELVTIDGSPSSEKL-FV 493 (1034)
T ss_pred cc-hhhHHHHHHHHHHHHHHHHH----------hhcCcceEeCCCCcCCHHHHHHHhcCCcceEEEEecCCCCccce-EE
Confidence 43 333 3344443333221 12277899999999988888777654 34445555554311100 00
Q ss_pred ccCCcccchhhhccCCCccccccccccccccceeeeEEEecCCchHHHHHHHHHhhhccccCceEEEEeecchhhhhHHH
Q 010357 258 RFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYS 337 (512)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~ 337 (512)
.|. .+.+... ....+.+......++.++. ..+-++|.||++++.|+.+..
T Consensus 494 ~WN-----------------------P~~~P~~-----~~~~~~~i~E~s~~~~~~i--~~~~R~IAFC~~R~~CEL~~~ 543 (1034)
T KOG4150|consen 494 LWN-----------------------PSAPPTS-----KSEKSSKVVEVSHLFAEMV--QHGLRCIAFCPSRKLCELVLC 543 (1034)
T ss_pred EeC-----------------------CCCCCcc-----hhhhhhHHHHHHHHHHHHH--HcCCcEEEeccHHHHHHHHHH
Confidence 000 0000000 0111234444445555553 235799999999999999988
Q ss_pred hhhhhcCCCCCCChhHHHhhhhccceeeecCCCCHHHHHHHHHhhhcCCCcEEEeecccccCCCCCCCcEEEEeCCCCCh
Q 010357 338 LLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEA 417 (512)
Q Consensus 338 ~l~~~~~~~~~~~~~~~~~~~~~~~v~~l~g~~~~~~r~~~~~~f~~~~~~vLvaT~~~~~Gldip~~~~VI~~~~p~s~ 417 (512)
..++.....+... --.+..+.|+...++|.++++..-.|+..-+|+|++++.|+|+.+.+-|++.+.|.|.
T Consensus 544 ~~R~I~~ET~~~L---------V~~i~SYRGGY~A~DRRKIE~~~F~G~L~giIaTNALELGIDIG~LDAVl~~GFP~S~ 614 (1034)
T KOG4150|consen 544 LTREILAETAPHL---------VEAITSYRGGYIAEDRRKIESDLFGGKLCGIIATNALELGIDIGHLDAVLHLGFPGSI 614 (1034)
T ss_pred HHHHHHHHhhHHH---------HHHHHhhcCccchhhHHHHHHHhhCCeeeEEEecchhhhccccccceeEEEccCchhH
Confidence 8877643322111 1134557899999999999999999999999999999999999999999999999999
Q ss_pred hHHHHhhhhcccCCCCccEEEe--cCccchhHHHHHHH
Q 010357 418 TEYVHRVGRTARLGERGDSLLF--LQPVEMDYLQDLEK 453 (512)
Q Consensus 418 ~~~~Q~~GRagR~g~~g~~~~~--~~~~~~~~~~~l~~ 453 (512)
..+.|+.|||||..++..++.+ ..|-|+.++..-..
T Consensus 615 aNl~QQ~GRAGRRNk~SLavyva~~~PVDQ~Y~~HP~~ 652 (1034)
T KOG4150|consen 615 ANLWQQAGRAGRRNKPSLAVYVAFLGPVDQYYMSHPDK 652 (1034)
T ss_pred HHHHHHhccccccCCCceEEEEEeccchhhHhhcCcHH
Confidence 9999999999999888765544 44667777665444
No 126
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=99.87 E-value=2e-20 Score=190.25 Aligned_cols=336 Identities=18% Similarity=0.199 Sum_probs=221.8
Q ss_pred hcCCCCCcHHHHHHHHHhhcCCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHH
Q 010357 36 RLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHK 115 (512)
Q Consensus 36 ~~~~~~~~~~Q~~~~~~~~~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~ 115 (512)
..|.. |++.|.-.--.+.+| -|..+.||+|||+++.+|++-.... |..+.+++|+..||.+-++++..
T Consensus 78 ~lGm~-~ydVQliGg~~Lh~G--~iaEM~TGEGKTLvA~l~a~l~al~---------G~~VhvvT~ndyLA~RD~e~m~~ 145 (913)
T PRK13103 78 VMGMR-HFDVQLIGGMTLHEG--KIAEMRTGEGKTLVGTLAVYLNALS---------GKGVHVVTVNDYLARRDANWMRP 145 (913)
T ss_pred HhCCC-cchhHHHhhhHhccC--ccccccCCCCChHHHHHHHHHHHHc---------CCCEEEEeCCHHHHHHHHHHHHH
Confidence 34765 899998776666555 7889999999999999999877666 88899999999999999999999
Q ss_pred HHhhcCCcceEEEeCCCchHHHHHHHcCCCCEEEeCChHH-HHHHhhc-----CCCcCCceeEEEEcchhHHHhcC----
Q 010357 116 LLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRL-LDHLKHT-----SSFLHTNLRWIIFDEADRILELG---- 185 (512)
Q Consensus 116 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~Iiv~Tp~~l-~~~l~~~-----~~~~~~~~~~lV~DEah~l~~~~---- 185 (512)
++..+| +.++++.++.......... .+||+++|..-+ ++.|... .......+.++|+||+|+++=..
T Consensus 146 l~~~lG-l~v~~i~~~~~~~err~~Y--~~dI~YGT~~e~gFDYLrD~~~~~~~~~vqr~l~~aIVDEvDsiLIDEArtP 222 (913)
T PRK13103 146 LYEFLG-LSVGIVTPFQPPEEKRAAY--AADITYGTNNEFGFDYLRDNMAFSLDDKFQRELNFAVIDEVDSILIDEARTP 222 (913)
T ss_pred HhcccC-CEEEEECCCCCHHHHHHHh--cCCEEEEcccccccchhhccceechhhhcccccceeEechhhheeccccCCc
Confidence 999887 4556665554444433333 389999999886 3433321 11234678999999999843210
Q ss_pred ------------chHHHHHHHHHhccC----------------------------------------CC-----------
Q 010357 186 ------------FGKEIEEILDILGSR----------------------------------------NI----------- 202 (512)
Q Consensus 186 ------------~~~~~~~i~~~~~~~----------------------------------------~~----------- 202 (512)
.+..+..+...+... ..
T Consensus 223 LIISg~~~~~~~~y~~~~~~v~~L~~~~~~~~~~~~~~~~y~idek~~~v~LTe~G~~~~e~~~~~~~i~~~~~~ly~~~ 302 (913)
T PRK13103 223 LIISGQAEDSSKLYIEINRLIPRLKQHIEEVEGQVTQEGHFTIDEKTRQVELNEAGHQFIEEMLTQAGLLAEGESLYSAH 302 (913)
T ss_pred eeecCCCccchHHHHHHHHHHHHHHhhhhccccccCCCCCeEEEcCCCeeeechHHHHHHHHHhhhCCCcccchhccChh
Confidence 111111221111000 00
Q ss_pred --------------------------------------CCCC--CCCc--------------cc---------------c
Q 010357 203 --------------------------------------GSIG--EGNE--------------VS---------------N 213 (512)
Q Consensus 203 --------------------------------------~~~~--~~~~--------------~~---------------~ 213 (512)
+... ..++ .. .
T Consensus 303 ~~~~~~~i~~AL~A~~lf~~d~dYiV~dg~V~IVDe~TGR~m~grrwsdGLHQaIEaKE~v~I~~e~~t~AsIT~QnfFr 382 (913)
T PRK13103 303 NLGLLTHVYAGLRAHKLFHRNVEYIVQDGQVLLIDEHTGRTMPGRRLSEGLHQAIEAKENLNIQAESQTLASTTFQNYFR 382 (913)
T ss_pred hhHHHHHHHHHHHHHHHHhcCCcEEEECCEEEEEECCCCCcCCCCccchHHHHHHHHHcCCCcCCCceeEEeehHHHHHH
Confidence 0000 0000 00 0
Q ss_pred cceeEEEEEEecchhhHHHHHhhcCCCeEEccCCCcCCCCccccccCCcccchhhhccCCCccccccccccccccceeee
Q 010357 214 VKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLPEDKSHVRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQR 293 (512)
Q Consensus 214 ~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (512)
.-.++.+||+|.......+...+.-+...+-. ..+ ..+.-...
T Consensus 383 ~Y~kLsGMTGTa~te~~Ef~~iY~l~Vv~IPT-nkP------------------------------------~~R~D~~d 425 (913)
T PRK13103 383 LYNKLSGMTGTADTEAFEFRQIYGLDVVVIPP-NKP------------------------------------LARKDFND 425 (913)
T ss_pred hcchhccCCCCCHHHHHHHHHHhCCCEEECCC-CCC------------------------------------cccccCCC
Confidence 01146677777655555555544333333211 110 11111122
Q ss_pred EEEecCCchHHHHHHHHHhhhccccCceEEEEeecchhhhhHHHhhhhhcCCCCCCChhHHHhhhhccceeeecCCCCHH
Q 010357 294 YVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQE 373 (512)
Q Consensus 294 ~~~~~~~~k~~~l~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~l~g~~~~~ 373 (512)
.+.....+|+.++.+.+.... ..+.|+||-+.|++..+.++++|... +++.-.++......
T Consensus 426 ~vy~t~~eK~~Ai~~ei~~~~--~~GrPVLVGT~SVe~SE~ls~~L~~~-----------------gi~h~VLNAk~~~~ 486 (913)
T PRK13103 426 LVYLTAEEKYAAIITDIKECM--ALGRPVLVGTATIETSEHMSNLLKKE-----------------GIEHKVLNAKYHEK 486 (913)
T ss_pred eEEcCHHHHHHHHHHHHHHHH--hCCCCEEEEeCCHHHHHHHHHHHHHc-----------------CCcHHHhccccchh
Confidence 344556789999999888774 56789999999999999999999988 56666666664433
Q ss_pred HHHHHHHhhhcCCCcEEEeecccccCCCCC-------------------------------------CCcEEEEeCCCCC
Q 010357 374 DRRTTFGAFKTEKKALLLSTDVAARGLDFP-------------------------------------KVKCIIQYDSAGE 416 (512)
Q Consensus 374 ~r~~~~~~f~~~~~~vLvaT~~~~~Gldip-------------------------------------~~~~VI~~~~p~s 416 (512)
+-+.+-+.=+. -.|-|||+++++|.|+. +-=+||-...+.|
T Consensus 487 EA~IIa~AG~~--GaVTIATNMAGRGTDIkLg~n~~~~~~~~~~~~~~~~~~~~~~~~~~~e~V~e~GGLhVIgTerheS 564 (913)
T PRK13103 487 EAEIIAQAGRP--GALTIATNMAGRGTDILLGGNWEVEVAALENPTPEQIAQIKADWQKRHQQVIEAGGLHVIASERHES 564 (913)
T ss_pred HHHHHHcCCCC--CcEEEeccCCCCCCCEecCCchHHHHHhhhhhhHHHHHHHHHHHHhHHHHHHHcCCCEEEeeccCch
Confidence 33444432222 37999999999999993 2227888889999
Q ss_pred hhHHHHhhhhcccCCCCccEEEecCccc
Q 010357 417 ATEYVHRVGRTARLGERGDSLLFLQPVE 444 (512)
Q Consensus 417 ~~~~~Q~~GRagR~g~~g~~~~~~~~~~ 444 (512)
..-=.|-.||+||.|.+|.+-.|++-+|
T Consensus 565 rRID~QLrGRaGRQGDPGsS~f~lSlED 592 (913)
T PRK13103 565 RRIDNQLRGRAGRQGDPGSSRFYLSLED 592 (913)
T ss_pred HHHHHHhccccccCCCCCceEEEEEcCc
Confidence 9999999999999999999999998766
No 127
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=99.86 E-value=4e-21 Score=195.81 Aligned_cols=362 Identities=18% Similarity=0.215 Sum_probs=225.8
Q ss_pred CCCcHHHHHHHHHhh----cCCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHH
Q 010357 40 EAPTKVQAQAIPVIL----SGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHK 115 (512)
Q Consensus 40 ~~~~~~Q~~~~~~~~----~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~ 115 (512)
.++|+||.+.+..++ .++++|+...+|.|||+.....+...+.... ..+..|+++|...+.. |.+.|..
T Consensus 369 ~~LRdyQLeGlNWl~~~W~~~~n~ILADEmgLgktvqti~fl~~l~~~~~------~~gpflvvvplst~~~-W~~ef~~ 441 (1373)
T KOG0384|consen 369 NELRDYQLEGLNWLLYSWYKRNNCILADEMGLGKTVQTITFLSYLFHSLQ------IHGPFLVVVPLSTITA-WEREFET 441 (1373)
T ss_pred chhhhhhcccchhHHHHHHhcccceehhhcCCCcchHHHHHHHHHHHhhh------ccCCeEEEeehhhhHH-HHHHHHH
Confidence 469999999887644 7889999999999999876555444433311 1344899999977655 7777888
Q ss_pred HHhhcCCcceEEEeCCCchHHHHHHHc----C-----CCCEEEeCChHHHHHHhhcCCCcCCceeEEEEcchhHHHhcCc
Q 010357 116 LLHRFHWIVPGYVMGGENRSKEKARLR----K-----GISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGF 186 (512)
Q Consensus 116 ~~~~~~~~~~~~~~~g~~~~~~~~~~~----~-----~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lV~DEah~l~~~~~ 186 (512)
|.. ..+.++.|.......++... . +.+++++|++.++.--...+.+ .+.++++||||+|-+ .
T Consensus 442 w~~----mn~i~y~g~~~sr~~i~~ye~~~~~~~~~lkf~~lltTye~~LkDk~~L~~i---~w~~~~vDeahrLkN--~ 512 (1373)
T KOG0384|consen 442 WTD----MNVIVYHGNLESRQLIRQYEFYHSSNTKKLKFNALLTTYEIVLKDKAELSKI---PWRYLLVDEAHRLKN--D 512 (1373)
T ss_pred Hhh----hceeeeecchhHHHHHHHHHheecCCccccccceeehhhHHHhccHhhhccC---CcceeeecHHhhcCc--h
Confidence 762 33444555555555544321 1 3689999999997654443333 678999999999865 4
Q ss_pred hHHHHHHHHHhccCCCCCCCCCCcccccceeEEEEEEecch-hhHHHHHh-hcCCCeEEccCCCcCCCC-----------
Q 010357 187 GKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNE-KVNHLAKI-SLETPVLIGLDEKKLPED----------- 253 (512)
Q Consensus 187 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~----------- 253 (512)
.+.+...+..+.. ...+++|.||-. .+..+..+ .+-.|..+..........
T Consensus 513 ~~~l~~~l~~f~~----------------~~rllitgTPlQNsikEL~sLl~Fl~P~kf~~~~~f~~~~~~~~e~~~~~L 576 (1373)
T KOG0384|consen 513 ESKLYESLNQFKM----------------NHRLLITGTPLQNSLKELWSLLHFLMPGKFDSWDEFLEEFDEETEEQVRKL 576 (1373)
T ss_pred HHHHHHHHHHhcc----------------cceeeecCCCccccHHHHHHHhcccCCCCCCcHHHHHHhhcchhHHHHHHH
Confidence 5566666666653 345788888764 44444432 233333222211100000
Q ss_pred ---ccccccCCcccchhhhccCCCcccc------------------------ccc-ccc--------ccccceeeeEEEe
Q 010357 254 ---KSHVRFGSLESDVKEEVEHPSTTMR------------------------STT-EDF--------KLPAQLVQRYVKV 297 (512)
Q Consensus 254 ---~~~~~~~~~~~~~~~~~~~~~~~~~------------------------~~~-~~~--------~~~~~~~~~~~~~ 297 (512)
..+..+..+..+.......-..... ... ... .+..-..|-|..-
T Consensus 577 ~~~L~P~~lRr~kkdvekslp~k~E~IlrVels~lQk~yYk~ILtkN~~~LtKG~~g~~~~lLNimmELkKccNHpyLi~ 656 (1373)
T KOG0384|consen 577 QQILKPFLLRRLKKDVEKSLPPKEETILRVELSDLQKQYYKAILTKNFSALTKGAKGSTPSLLNIMMELKKCCNHPYLIK 656 (1373)
T ss_pred HHHhhHHHHHHHHhhhccCCCCCcceEEEeehhHHHHHHHHHHHHhhHHHHhccCCCCCchHHHHHHHHHHhcCCccccC
Confidence 0000011111111110000000000 000 000 0000011112221
Q ss_pred cC-----------------------CchHHHHHHHHHhhhccccCceEEEEeecchhhhhHHHhhhhhcCCCCCCChhHH
Q 010357 298 PC-----------------------GSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMEL 354 (512)
Q Consensus 298 ~~-----------------------~~k~~~l~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 354 (512)
+. +.|+..|-.+|..+ ...++++|||..-+.....++++|...
T Consensus 657 gaee~~~~~~~~~~~d~~L~~lI~sSGKlVLLDKLL~rL--k~~GHrVLIFSQMVRmLDIL~eYL~~r------------ 722 (1373)
T KOG0384|consen 657 GAEEKILGDFRDKMRDEALQALIQSSGKLVLLDKLLPRL--KEGGHRVLIFSQMVRMLDILAEYLSLR------------ 722 (1373)
T ss_pred cHHHHHHHhhhhcchHHHHHHHHHhcCcEEeHHHHHHHH--hcCCceEEEhHHHHHHHHHHHHHHHHc------------
Confidence 11 12222222223332 345789999999999999999999887
Q ss_pred HhhhhccceeeecCCCCHHHHHHHHHhhhcC---CCcEEEeecccccCCCCCCCcEEEEeCCCCChhHHHHhhhhcccCC
Q 010357 355 KQLFLRCKTFRLHGNMKQEDRRTTFGAFKTE---KKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRVGRTARLG 431 (512)
Q Consensus 355 ~~~~~~~~v~~l~g~~~~~~r~~~~~~f~~~---~~~vLvaT~~~~~Gldip~~~~VI~~~~p~s~~~~~Q~~GRagR~g 431 (512)
+++.-.+.|.+..+.|++.++.|.+. .+..|+||-+.+.|||+..++.||+||..|||..=+|+..||.|.|
T Consensus 723 -----~ypfQRLDGsvrgelRq~AIDhFnap~SddFvFLLSTRAGGLGINLatADTVIIFDSDWNPQNDLQAqARaHRIG 797 (1373)
T KOG0384|consen 723 -----GYPFQRLDGSVRGELRQQAIDHFNAPDSDDFVFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAQARAHRIG 797 (1373)
T ss_pred -----CCcceeccCCcchHHHHHHHHhccCCCCCceEEEEecccCcccccccccceEEEeCCCCCcchHHHHHHHHHhhc
Confidence 88999999999999999999999964 4568999999999999999999999999999999999999999999
Q ss_pred CCccE--EEecCccc--hhHHHHHH
Q 010357 432 ERGDS--LLFLQPVE--MDYLQDLE 452 (512)
Q Consensus 432 ~~g~~--~~~~~~~~--~~~~~~l~ 452 (512)
+...+ |-+++.+. .+.+.+..
T Consensus 798 Qkk~VnVYRLVTk~TvEeEilERAk 822 (1373)
T KOG0384|consen 798 QKKHVNVYRLVTKNTVEEEILERAK 822 (1373)
T ss_pred ccceEEEEEEecCCchHHHHHHHHH
Confidence 98765 45566543 34444433
No 128
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=99.86 E-value=4.4e-20 Score=187.68 Aligned_cols=393 Identities=17% Similarity=0.219 Sum_probs=236.5
Q ss_pred CCcHHHHHHHHHhh---c-CCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHH
Q 010357 41 APTKVQAQAIPVIL---S-GRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKL 116 (512)
Q Consensus 41 ~~~~~Q~~~~~~~~---~-~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 116 (512)
.+|.||++.+..+. + +=+.|+|..+|.|||+..+..+......+..+........+||+||+ .|+.-|..++.++
T Consensus 975 ~LRkYQqEGVnWLaFLnky~LHGILcDDMGLGKTLQticilAsd~y~r~s~~~e~~~~PSLIVCPs-TLtGHW~~E~~kf 1053 (1549)
T KOG0392|consen 975 KLRKYQQEGVNWLAFLNKYKLHGILCDDMGLGKTLQTICILASDHYKRRSESSEFNRLPSLIVCPS-TLTGHWKSEVKKF 1053 (1549)
T ss_pred HHHHHHHhccHHHHHHHHhcccceeeccccccHHHHHHHHHHHHHHhhcccchhhccCCeEEECCc-hhhhHHHHHHHHh
Confidence 46999999876432 2 34789999999999999776655444443222222334558999999 7888899999998
Q ss_pred HhhcCCcceEEEeCCCchHHHHHHHcCCCCEEEeCChHHHHHHhhcCCCcCCceeEEEEcchhHHHhcCchHHHHHHHHH
Q 010357 117 LHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDI 196 (512)
Q Consensus 117 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lV~DEah~l~~~~~~~~~~~i~~~ 196 (512)
+.. ..+....|+.......+.-.+..+|+|++++.+.+.+...... .+.|.|+||-|-+.+ -...+....+.
T Consensus 1054 ~pf---L~v~~yvg~p~~r~~lR~q~~~~~iiVtSYDv~RnD~d~l~~~---~wNYcVLDEGHVikN--~ktkl~kavkq 1125 (1549)
T KOG0392|consen 1054 FPF---LKVLQYVGPPAERRELRDQYKNANIIVTSYDVVRNDVDYLIKI---DWNYCVLDEGHVIKN--SKTKLTKAVKQ 1125 (1549)
T ss_pred cch---hhhhhhcCChHHHHHHHhhccccceEEeeHHHHHHHHHHHHhc---ccceEEecCcceecc--hHHHHHHHHHH
Confidence 765 3344444544444433444455799999999997654432222 688999999998765 44555555666
Q ss_pred hccCCCCCCCCCCcccccceeEEEEEEecch-hhHHHHHhh-----------------cCCCeEEccCCCc---------
Q 010357 197 LGSRNIGSIGEGNEVSNVKRQNLLLSATLNE-KVNHLAKIS-----------------LETPVLIGLDEKK--------- 249 (512)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~-~~~~~~~~~-----------------~~~~~~~~~~~~~--------- 249 (512)
+. ..+.+.+|+||-. ++..+-.++ +..|+.-..+...
T Consensus 1126 L~----------------a~hRLILSGTPIQNnvleLWSLFdFLMPGfLGtEKqFqsrf~kpI~asRd~K~Sske~EaG~ 1189 (1549)
T KOG0392|consen 1126 LR----------------ANHRLILSGTPIQNNVLELWSLFDFLMPGFLGTEKQFQSRFGKPILASRDPKSSSKEQEAGV 1189 (1549)
T ss_pred Hh----------------hcceEEeeCCCcccCHHHHHHHHHHhcccccCcHHHHHHHhcchhhhhcCcccchhHHHhhH
Confidence 65 3455788999743 222221111 1112111111100
Q ss_pred -------------------------CCCCccccccCCccc---chhhhccCC-Ccccccccc--cccccc----------
Q 010357 250 -------------------------LPEDKSHVRFGSLES---DVKEEVEHP-STTMRSTTE--DFKLPA---------- 288 (512)
Q Consensus 250 -------------------------~~~~~~~~~~~~~~~---~~~~~~~~~-~~~~~~~~~--~~~~~~---------- 288 (512)
+|+....-++-++.. +........ ......... ..+...
T Consensus 1190 lAleaLHKqVLPF~LRRlKedVL~DLPpKIIQDyyCeLs~lQ~kLY~df~~~~k~~~~~~~d~~~~S~gt~~~HvFqaLq 1269 (1549)
T KOG0392|consen 1190 LALEALHKQVLPFLLRRLKEDVLKDLPPKIIQDYYCELSPLQKKLYRDFVKKAKQCVSSQIDGGEESLGTDKTHVFQALQ 1269 (1549)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCChhhhhheeeccCHHHHHHHHHHHHHhccccccccccchhccCcchHHHHHHHH
Confidence 010000000111110 000000000 000000000 000000
Q ss_pred ---ce-eee-EEEe-----------------------cCCchHHHHHHHHHhhhcc------------ccCceEEEEeec
Q 010357 289 ---QL-VQR-YVKV-----------------------PCGSRLAVLLSILKHLFDT------------EVSQKLVVFFST 328 (512)
Q Consensus 289 ---~~-~~~-~~~~-----------------------~~~~k~~~l~~~l~~~~~~------------~~~~~~lvf~~~ 328 (512)
.+ .|- .+.. ..+.|+.++.+++.+---. ..+++++|||.-
T Consensus 1270 YlrKLcnHpaLvlt~~hp~la~i~~~l~~~~~~LHdi~hspKl~AL~qLL~eCGig~~~~~~~g~~s~vsqHRiLIFcQl 1349 (1549)
T KOG0392|consen 1270 YLRKLCNHPALVLTPVHPDLAAIVSHLAHFNSSLHDIQHSPKLSALKQLLSECGIGNNSDSEVGTPSDVSQHRILIFCQL 1349 (1549)
T ss_pred HHHHhcCCcceeeCCCcchHHHHHHHHHHhhhhHHHhhhchhHHHHHHHHHHhCCCCCCcccccCcchhccceeEEeeeH
Confidence 00 000 0111 1245666666666542100 134699999999
Q ss_pred chhhhhHHHhhhhhcCCCCCCChhHHHhhhhccceeeecCCCCHHHHHHHHHhhhcC-CCcE-EEeecccccCCCCCCCc
Q 010357 329 CDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTE-KKAL-LLSTDVAARGLDFPKVK 406 (512)
Q Consensus 329 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~l~g~~~~~~r~~~~~~f~~~-~~~v-LvaT~~~~~Gldip~~~ 406 (512)
+.....+.+.|.+.- .|.+....+.|+.++.+|.++.++|.++ .++| |.+|.+.+.|+|+.+++
T Consensus 1350 K~mlDlVekDL~k~~--------------mpsVtymRLDGSVpp~~R~kiV~~FN~DptIDvLlLTThVGGLGLNLTGAD 1415 (1549)
T KOG0392|consen 1350 KSMLDLVEKDLFKKY--------------MPSVTYMRLDGSVPPGDRQKIVERFNEDPTIDVLLLTTHVGGLGLNLTGAD 1415 (1549)
T ss_pred HHHHHHHHHHHhhhh--------------cCceeEEEecCCCCcHHHHHHHHHhcCCCceeEEEEeeeccccccccCCCc
Confidence 999998887776542 3355666889999999999999999998 5676 55679999999999999
Q ss_pred EEEEeCCCCChhHHHHhhhhcccCCCCccEEEe--cCccc-hhHHHHHHH------------cCCCCCccChhhHhhhcc
Q 010357 407 CIIQYDSAGEATEYVHRVGRTARLGERGDSLLF--LQPVE-MDYLQDLEK------------HGVSLTEYPLLKVLDSFP 471 (512)
Q Consensus 407 ~VI~~~~p~s~~~~~Q~~GRagR~g~~g~~~~~--~~~~~-~~~~~~l~~------------~~~~~~~~~~~~~l~~~~ 471 (512)
.||.+.-.|||..=+|.+-||.|.|++..+.+| ++.+- ++.+--|++ .+-.++.++=+.+++-|.
T Consensus 1416 TVVFvEHDWNPMrDLQAMDRAHRIGQKrvVNVyRlItrGTLEEKVMgLQkFKmnvAntvInqqNasl~tM~TdqLLdlF~ 1495 (1549)
T KOG0392|consen 1416 TVVFVEHDWNPMRDLQAMDRAHRIGQKRVVNVYRLITRGTLEEKVMGLQKFKMNVANTVINQQNASLETMDTDQLLDLFT 1495 (1549)
T ss_pred eEEEEecCCCchhhHHHHHHHHhhcCceeeeeeeehhcccHHHHHhhHHHHhhHHHHHHHhcccccccccCHHHHHHHhc
Confidence 999999999999999999999999998765444 55433 222222222 356667777788888877
Q ss_pred c
Q 010357 472 L 472 (512)
Q Consensus 472 ~ 472 (512)
.
T Consensus 1496 ~ 1496 (1549)
T KOG0392|consen 1496 V 1496 (1549)
T ss_pred c
Confidence 3
No 129
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.86 E-value=2.7e-20 Score=181.72 Aligned_cols=337 Identities=18% Similarity=0.191 Sum_probs=208.9
Q ss_pred HHHHHhhcCCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHHhhcCCcceEE
Q 010357 48 QAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGY 127 (512)
Q Consensus 48 ~~~~~~~~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~ 127 (512)
+..++|..+--+|+||.||||||...-.+++++=..... ...+..+=|--|.|..|..+++....-+..++. .+++
T Consensus 263 ~IMEaIn~n~vvIIcGeTGsGKTTQvPQFLYEAGf~s~~---~~~~gmIGITqPRRVAaiamAkRVa~EL~~~~~-eVsY 338 (1172)
T KOG0926|consen 263 RIMEAINENPVVIICGETGSGKTTQVPQFLYEAGFASEQ---SSSPGMIGITQPRRVAAIAMAKRVAFELGVLGS-EVSY 338 (1172)
T ss_pred HHHHHhhcCCeEEEecCCCCCccccchHHHHHcccCCcc---CCCCCeeeecCchHHHHHHHHHHHHHHhccCcc-ceeE
Confidence 345555566668999999999998877766665332111 123556778889998887777665444333332 2222
Q ss_pred E--eCCCchHHHHHHHcCCCCEEEeCChHHHHHHhhcCCCcCCceeEEEEcchhHHHhcCchHHHHHHHHHhccCCCCCC
Q 010357 128 V--MGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILGSRNIGSI 205 (512)
Q Consensus 128 ~--~~g~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lV~DEah~l~~~~~~~~~~~i~~~~~~~~~~~~ 205 (512)
. +.|.- .....|.++|.+.|++-+.+ .+.+..++.||+||||.=.- ..+.+-.+++++-+......
T Consensus 339 qIRfd~ti--------~e~T~IkFMTDGVLLrEi~~--DflL~kYSvIIlDEAHERSv--nTDILiGmLSRiV~LR~k~~ 406 (1172)
T KOG0926|consen 339 QIRFDGTI--------GEDTSIKFMTDGVLLREIEN--DFLLTKYSVIILDEAHERSV--NTDILIGMLSRIVPLRQKYY 406 (1172)
T ss_pred EEEecccc--------CCCceeEEecchHHHHHHHH--hHhhhhceeEEechhhhccc--hHHHHHHHHHHHHHHHHHHh
Confidence 2 22211 22357999999999998874 45667999999999996211 22223333332221100000
Q ss_pred CCCCcccccceeEEEEEEecchhhHHHH---HhhcCCCeEEccCCCcCCCCccccccCCcccchhhhccCCCcccccccc
Q 010357 206 GEGNEVSNVKRQNLLLSATLNEKVNHLA---KISLETPVLIGLDEKKLPEDKSHVRFGSLESDVKEEVEHPSTTMRSTTE 282 (512)
Q Consensus 206 ~~~~~~~~~~~~~i~~SAT~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (512)
.....-.+.++|+||||+.- ..|. .++-..|-++.++...++.
T Consensus 407 --ke~~~~kpLKLIIMSATLRV--sDFtenk~LFpi~pPlikVdARQfPV------------------------------ 452 (1172)
T KOG0926|consen 407 --KEQCQIKPLKLIIMSATLRV--SDFTENKRLFPIPPPLIKVDARQFPV------------------------------ 452 (1172)
T ss_pred --hhhcccCceeEEEEeeeEEe--cccccCceecCCCCceeeeecccCce------------------------------
Confidence 00011226789999999852 2222 2222233344444443210
Q ss_pred ccccccceeeeEEEecCCchHHHHHHHHHhhhccccCceEEEEeecchhhhhHHHhhhhhcCCCC---------------
Q 010357 283 DFKLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPH--------------- 347 (512)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~--------------- 347 (512)
..| +..-...+-......-...+....+.+.+|||+....++..+++.|+.......
T Consensus 453 -------sIH-F~krT~~DYi~eAfrKtc~IH~kLP~G~ILVFvTGQqEV~qL~~kLRK~~p~~f~~~k~~k~~k~~~e~ 524 (1172)
T KOG0926|consen 453 -------SIH-FNKRTPDDYIAEAFRKTCKIHKKLPPGGILVFVTGQQEVDQLCEKLRKRFPESFGGVKMKKNVKAFKEL 524 (1172)
T ss_pred -------EEE-eccCCCchHHHHHHHHHHHHhhcCCCCcEEEEEeChHHHHHHHHHHHhhCccccccchhhhhhhhcccc
Confidence 011 111122234444455555666678889999999999999999999987532100
Q ss_pred -C--------CC---------------------hh-------------------------HHHh------h------hhc
Q 010357 348 -S--------QP---------------------DM-------------------------ELKQ------L------FLR 360 (512)
Q Consensus 348 -~--------~~---------------------~~-------------------------~~~~------~------~~~ 360 (512)
. +. +. ...+ + -..
T Consensus 525 k~~~s~~~~~~k~~dfe~Ed~~~~~ed~d~~~~~~~~~~~raa~~~~~De~~~~nge~e~d~~e~~~E~~~~~~~~~~~p 604 (1172)
T KOG0926|consen 525 KENPSDIGDSNKTDDFEEEDMYESDEDIDQELVDSGFASLRAAFNALADENGSVNGEPEKDESEEGQEAEQGKGKFSPGP 604 (1172)
T ss_pred ccchhhhccCcccccchhcccccchhhhhhhhhcccchhhhhhhhccccccccccCCcccchhhhchhhhhccCCCCCCc
Confidence 0 00 00 0000 0 012
Q ss_pred cceeeecCCCCHHHHHHHHHhhhcCCCcEEEeecccccCCCCCCCcEEEEeCCC--------C----------ChhHHHH
Q 010357 361 CKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSA--------G----------EATEYVH 422 (512)
Q Consensus 361 ~~v~~l~g~~~~~~r~~~~~~f~~~~~~vLvaT~~~~~Gldip~~~~VI~~~~p--------~----------s~~~~~Q 422 (512)
.-|..+++-++.+.+.++++.-..|..-++|||++++..+.+|++.+||..+.- . |-.+--|
T Consensus 605 LyvLPLYSLLs~~~Q~RVF~~~p~g~RLcVVaTNVAETSLTIPgIkYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASadQ 684 (1172)
T KOG0926|consen 605 LYVLPLYSLLSTEKQMRVFDEVPKGERLCVVATNVAETSLTIPGIKYVVDCGRVKERLYDSKTGVSSFEVDWISKASADQ 684 (1172)
T ss_pred eEEeehhhhcCHHHhhhhccCCCCCceEEEEeccchhcccccCCeeEEEeccchhhhccccccCceeEEEEeeeccccch
Confidence 336778888999999999999999999999999999999999999999976632 2 3344469
Q ss_pred hhhhcccCCCCccEEEecCcc
Q 010357 423 RVGRTARLGERGDSLLFLQPV 443 (512)
Q Consensus 423 ~~GRagR~g~~g~~~~~~~~~ 443 (512)
|+|||||.| +|+||-+|+..
T Consensus 685 RAGRAGRtg-pGHcYRLYSSA 704 (1172)
T KOG0926|consen 685 RAGRAGRTG-PGHCYRLYSSA 704 (1172)
T ss_pred hccccCCCC-CCceeehhhhH
Confidence 999999995 79999998854
No 130
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.85 E-value=1.2e-18 Score=183.19 Aligned_cols=145 Identities=15% Similarity=0.168 Sum_probs=93.9
Q ss_pred hHHHHHHHHHhhhccccCceEEEEeecchhhhhHHHhhhhhcCCCCCCChhHHHhhhhccceeeecCCCCHHHHHHHHHh
Q 010357 302 RLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGA 381 (512)
Q Consensus 302 k~~~l~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~l~g~~~~~~r~~~~~~ 381 (512)
....+.+.+..+. ..+++++|+++|.+..+.+++.|... ...+ ...|.-. .+..++++
T Consensus 632 ~~~~~~~~i~~~~--~~~g~~LVLFtS~~~l~~v~~~l~~~-----------------~~~~-l~Qg~~~--~~~~l~~~ 689 (820)
T PRK07246 632 YAEEIAKRLEELK--QLQQPILVLFNSKKHLLAVSDLLDQW-----------------QVSH-LAQEKNG--TAYNIKKR 689 (820)
T ss_pred HHHHHHHHHHHHH--hcCCCEEEEECcHHHHHHHHHHHhhc-----------------CCcE-EEeCCCc--cHHHHHHH
Confidence 3446666665554 34689999999999999999888643 2334 3344322 25668999
Q ss_pred hhcCCCcEEEeecccccCCCCCC--CcEEEEeCCCC------------------------------ChhHHHHhhhhccc
Q 010357 382 FKTEKKALLLSTDVAARGLDFPK--VKCIIQYDSAG------------------------------EATEYVHRVGRTAR 429 (512)
Q Consensus 382 f~~~~~~vLvaT~~~~~Gldip~--~~~VI~~~~p~------------------------------s~~~~~Q~~GRagR 429 (512)
|++++..||++|+.+.+|||+|+ ...||....|. -...+.|.+||.-|
T Consensus 690 F~~~~~~vLlG~~sFwEGVD~p~~~~~~viI~kLPF~~P~dP~~~a~~~~~~~~g~~~F~~~~lP~A~iklkQg~GRLIR 769 (820)
T PRK07246 690 FDRGEQQILLGLGSFWEGVDFVQADRMIEVITRLPFDNPEDPFVKKMNQYLLQEGKNPFYDYFLPMTILRLKQAIGRTMR 769 (820)
T ss_pred HHcCCCeEEEecchhhCCCCCCCCCeEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCchhheeHHHHHHHHHHHhccccc
Confidence 99998899999999999999974 45566666552 12245799999999
Q ss_pred CCCCccEEEecCcc--chhHHHHHHHc---CCCCCccChhhHhh
Q 010357 430 LGERGDSLLFLQPV--EMDYLQDLEKH---GVSLTEYPLLKVLD 468 (512)
Q Consensus 430 ~g~~g~~~~~~~~~--~~~~~~~l~~~---~~~~~~~~~~~~l~ 468 (512)
.....-+++++++. ...+-+.+.+. ++++.+.+++.+.+
T Consensus 770 s~~D~Gvv~ilD~R~~~k~Yg~~~l~sLP~~~~~~~~~~~~~~~ 813 (820)
T PRK07246 770 REDQKSAVLILDRRILTKSYGKQILASLAEEFLISQQNFSDVLV 813 (820)
T ss_pred CCCCcEEEEEECCcccccHHHHHHHHhCCCCCccccCCHHHHHH
Confidence 86543345555542 23344444432 23444444444433
No 131
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.85 E-value=2.3e-19 Score=160.02 Aligned_cols=187 Identities=41% Similarity=0.608 Sum_probs=147.6
Q ss_pred cCCCCCcHHHHHHHHHhhcC-CCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHH
Q 010357 37 LGFEAPTKVQAQAIPVILSG-RHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHK 115 (512)
Q Consensus 37 ~~~~~~~~~Q~~~~~~~~~~-~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~ 115 (512)
+++..++++|.+++..+... +++++.+|||+|||.++..++.+.+... ...++++++|+..++.|+.+.+..
T Consensus 4 ~~~~~~~~~Q~~~~~~~~~~~~~~~i~~~~GsGKT~~~~~~~~~~~~~~-------~~~~~l~~~p~~~~~~~~~~~~~~ 76 (201)
T smart00487 4 FGFEPLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPALEALKRG-------KGKRVLVLVPTRELAEQWAEELKK 76 (201)
T ss_pred cCCCCCCHHHHHHHHHHHcCCCcEEEECCCCCchhHHHHHHHHHHhccc-------CCCcEEEEeCCHHHHHHHHHHHHH
Confidence 46678999999999999988 8999999999999999999998887652 246799999999999999999988
Q ss_pred HHhhcCCcceEEEeCCCchHHHHHHHcCCC-CEEEeCChHHHHHHhhcCCCcCCceeEEEEcchhHHHhcCchHHHHHHH
Q 010357 116 LLHRFHWIVPGYVMGGENRSKEKARLRKGI-SILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEIL 194 (512)
Q Consensus 116 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lV~DEah~l~~~~~~~~~~~i~ 194 (512)
.+.... .......++.............. +++++|++.+.+.+.... .....++++|+||+|++....+...+..++
T Consensus 77 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~t~~~l~~~~~~~~-~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~ 154 (201)
T smart00487 77 LGPSLG-LKVVGLYGGDSKREQLRKLESGKTDILVTTPGRLLDLLENDL-LELSNVDLVILDEAHRLLDGGFGDQLEKLL 154 (201)
T ss_pred HhccCC-eEEEEEeCCcchHHHHHHHhcCCCCEEEeChHHHHHHHHcCC-cCHhHCCEEEEECHHHHhcCCcHHHHHHHH
Confidence 865422 13334455555455555555555 999999999999887633 445578899999999988756778888888
Q ss_pred HHhccCCCCCCCCCCcccccceeEEEEEEecchhhHHHHHhhcCCCeEEccCC
Q 010357 195 DILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDE 247 (512)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~ 247 (512)
..++. ..+++++|||+++........+......+....
T Consensus 155 ~~~~~---------------~~~~v~~saT~~~~~~~~~~~~~~~~~~~~~~~ 192 (201)
T smart00487 155 KLLPK---------------NVQLLLLSATPPEEIENLLELFLNDPVFIDVGP 192 (201)
T ss_pred HhCCc---------------cceEEEEecCCchhHHHHHHHhcCCCEEEeCCc
Confidence 77643 789999999999888888888877666655443
No 132
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=99.85 E-value=9.3e-20 Score=169.15 Aligned_cols=347 Identities=15% Similarity=0.147 Sum_probs=215.2
Q ss_pred CCCCcHHHHHHHHHhh-cCCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHH
Q 010357 39 FEAPTKVQAQAIPVIL-SGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLL 117 (512)
Q Consensus 39 ~~~~~~~Q~~~~~~~~-~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 117 (512)
+..+.|+|++.+...+ .|..+++...+|.|||+.++..+..+... ...||+||. .+-..|++.+..|+
T Consensus 196 vs~LlPFQreGv~faL~RgGR~llADeMGLGKTiQAlaIA~yyraE----------wplliVcPA-svrftWa~al~r~l 264 (689)
T KOG1000|consen 196 VSRLLPFQREGVIFALERGGRILLADEMGLGKTIQALAIARYYRAE----------WPLLIVCPA-SVRFTWAKALNRFL 264 (689)
T ss_pred HHhhCchhhhhHHHHHhcCCeEEEecccccchHHHHHHHHHHHhhc----------CcEEEEecH-HHhHHHHHHHHHhc
Confidence 3468999999998766 67789999999999999988766555332 338999999 66778999999997
Q ss_pred hhcCCcceEEEeCCCchHHHHHHHcCCCCEEEeCChHHHHHHhhcCCCcCCceeEEEEcchhHHHhcCchHHHHHHHHHh
Q 010357 118 HRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDIL 197 (512)
Q Consensus 118 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lV~DEah~l~~~~~~~~~~~i~~~~ 197 (512)
..... +.++.++.+.... +.....|.|.+++.+..+-.. +.-..+.+||+||+|++.+. .......+...+
T Consensus 265 ps~~p--i~vv~~~~D~~~~---~~t~~~v~ivSye~ls~l~~~---l~~~~~~vvI~DEsH~Lk~s-ktkr~Ka~~dll 335 (689)
T KOG1000|consen 265 PSIHP--IFVVDKSSDPLPD---VCTSNTVAIVSYEQLSLLHDI---LKKEKYRVVIFDESHMLKDS-KTKRTKAATDLL 335 (689)
T ss_pred ccccc--eEEEecccCCccc---cccCCeEEEEEHHHHHHHHHH---HhcccceEEEEechhhhhcc-chhhhhhhhhHH
Confidence 65432 3344444443211 222346999999988554322 11235889999999987654 333455555555
Q ss_pred ccCCCCCCCCCCcccccceeEEEEEEecc--hhhHHHHHh------hcCCCeEEccCCCcCCCCccccccCCcccchhhh
Q 010357 198 GSRNIGSIGEGNEVSNVKRQNLLLSATLN--EKVNHLAKI------SLETPVLIGLDEKKLPEDKSHVRFGSLESDVKEE 269 (512)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~i~~SAT~~--~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (512)
.. ..++|++|+|+. .+.+....+ .+.+-..+.........-.....+.... .-.+
T Consensus 336 k~---------------akhvILLSGTPavSRP~elytqi~avd~tlfp~f~efa~rYCd~k~vr~~~Dykg~t--nl~E 398 (689)
T KOG1000|consen 336 KV---------------AKHVILLSGTPAVSRPSELYTQIRAVDHTLFPNFHEFAIRYCDGKQVRFCFDYKGCT--NLEE 398 (689)
T ss_pred HH---------------hhheEEecCCcccCCchhhhhhhhhhcccccccHHHHHHHhcCccccceeeecCCCC--CHHH
Confidence 54 668899999974 222111111 1111000111110000000000000000 0000
Q ss_pred ccCCCc-----cccccccccccccceeeeEEE-------------------------------------ecCCchHHHHH
Q 010357 270 VEHPST-----TMRSTTEDFKLPAQLVQRYVK-------------------------------------VPCGSRLAVLL 307 (512)
Q Consensus 270 ~~~~~~-----~~~~~~~~~~~~~~~~~~~~~-------------------------------------~~~~~k~~~l~ 307 (512)
...... .......-..+|..-....+. .....|...+.
T Consensus 399 L~~lL~k~lMIRRlK~dvL~qLPpKrr~Vv~~~~gr~da~~~~lv~~a~~~t~~~~~e~~~~~l~l~y~~tgiaK~~av~ 478 (689)
T KOG1000|consen 399 LAALLFKRLMIRRLKADVLKQLPPKRREVVYVSGGRIDARMDDLVKAAADYTKVNSMERKHESLLLFYSLTGIAKAAAVC 478 (689)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCccceEEEEEcCCccchHHHHHHHHhhhcchhhhhhhhhHHHHHHHHHhcccccHHHH
Confidence 000000 000000000111111111111 11234555555
Q ss_pred HHHHh--hhccccCceEEEEeecchhhhhHHHhhhhhcCCCCCCChhHHHhhhhccceeeecCCCCHHHHHHHHHhhhcC
Q 010357 308 SILKH--LFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTE 385 (512)
Q Consensus 308 ~~l~~--~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~l~g~~~~~~r~~~~~~f~~~ 385 (512)
+.+.. ++-..++.+.+|||......+.+-..+.+. +.+...+.|..+..+|....+.|...
T Consensus 479 eyi~~~~~l~d~~~~KflVFaHH~~vLd~Iq~~~~~r-----------------~vg~IRIDGst~s~~R~ll~qsFQ~s 541 (689)
T KOG1000|consen 479 EYILENYFLPDAPPRKFLVFAHHQIVLDTIQVEVNKR-----------------KVGSIRIDGSTPSHRRTLLCQSFQTS 541 (689)
T ss_pred HHHHhCcccccCCCceEEEEehhHHHHHHHHHHHHHc-----------------CCCeEEecCCCCchhHHHHHHHhccc
Confidence 55554 122456789999999999999999999887 78889999999999999999999965
Q ss_pred C-CcE-EEeecccccCCCCCCCcEEEEeCCCCChhHHHHhhhhcccCCCCccEEEe
Q 010357 386 K-KAL-LLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRVGRTARLGERGDSLLF 439 (512)
Q Consensus 386 ~-~~v-LvaT~~~~~Gldip~~~~VI~~~~p~s~~~~~Q~~GRagR~g~~g~~~~~ 439 (512)
+ ..| +++..+++.|+++...+.||....++++.-++|.--|+.|.|+...+.+.
T Consensus 542 eev~VAvlsItA~gvGLt~tAa~~VVFaEL~wnPgvLlQAEDRaHRiGQkssV~v~ 597 (689)
T KOG1000|consen 542 EEVRVAVLSITAAGVGLTLTAASVVVFAELHWNPGVLLQAEDRAHRIGQKSSVFVQ 597 (689)
T ss_pred cceEEEEEEEeecccceeeeccceEEEEEecCCCceEEechhhhhhccccceeeEE
Confidence 4 444 66678899999999999999999999999999999999999998765444
No 133
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=99.83 E-value=2.4e-18 Score=173.32 Aligned_cols=336 Identities=18% Similarity=0.215 Sum_probs=218.0
Q ss_pred HhcCCCCCcHHHHHHHHHhhcCCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcHHHHHHHHHHHH
Q 010357 35 ERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILH 114 (512)
Q Consensus 35 ~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~ 114 (512)
..+|.. |++.|.-..-.+..| -|..+.||-|||+++.+|++-.... |..|-+++..--||..-++++.
T Consensus 73 R~lG~r-~ydVQliGglvLh~G--~IAEMkTGEGKTLvAtLpayLnAL~---------GkgVhVVTvNdYLA~RDae~mg 140 (925)
T PRK12903 73 RVLGKR-PYDVQIIGGIILDLG--SVAEMKTGEGKTITSIAPVYLNALT---------GKGVIVSTVNEYLAERDAEEMG 140 (925)
T ss_pred HHhCCC-cCchHHHHHHHHhcC--CeeeecCCCCccHHHHHHHHHHHhc---------CCceEEEecchhhhhhhHHHHH
Confidence 344775 999999887766666 4799999999999999998755544 6778899999999999999999
Q ss_pred HHHhhcCCcceEEEeCCCchHHHHHHHcCCCCEEEeCChHH-HHHHhhc-----CCCcCCceeEEEEcchhHHHhc-C--
Q 010357 115 KLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRL-LDHLKHT-----SSFLHTNLRWIIFDEADRILEL-G-- 185 (512)
Q Consensus 115 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~Iiv~Tp~~l-~~~l~~~-----~~~~~~~~~~lV~DEah~l~~~-~-- 185 (512)
.+...+| +.+++...+.+...... ...+||+++|..-| ++.|... .......+.+.|+||+|.++=. .
T Consensus 141 ~vy~fLG-LsvG~i~~~~~~~~rr~--aY~~DItYgTn~E~gFDYLRDnm~~~~~~~vqR~~~faIVDEVDSILIDEArT 217 (925)
T PRK12903 141 KVFNFLG-LSVGINKANMDPNLKRE--AYACDITYSVHSELGFDYLRDNMVSSKEEKVQRGLNFCLIDEVDSILIDEAKT 217 (925)
T ss_pred HHHHHhC-CceeeeCCCCChHHHHH--hccCCCeeecCcccchhhhhhcccccHHHhcCcccceeeeccchheeecccCC
Confidence 9988888 45566555544443332 23589999999776 4444431 1123457889999999984321 0
Q ss_pred -------------chHHHHHHHHHhccC----------------------------C-----------------------
Q 010357 186 -------------FGKEIEEILDILGSR----------------------------N----------------------- 201 (512)
Q Consensus 186 -------------~~~~~~~i~~~~~~~----------------------------~----------------------- 201 (512)
.+..+..+...+... +
T Consensus 218 PLIISg~~~~~~~~Y~~~~~~v~~L~~~dy~iDek~k~v~LTe~G~~~~E~~l~i~nLy~~~n~~l~h~i~~AL~A~~lf 297 (925)
T PRK12903 218 PLIISGGQSNDSNLYLAADQFVRTLKEDDYKIDEETKAISLTEKGIKKANKFFKLKNLYDIENSELVHRIQNALRAHKVM 297 (925)
T ss_pred cccccCCCccchHHHHHHHHHHHhccccceEEecccceEEECHhHHHHHHHHcCCCcccChhhHHHHHHHHHHHHHHHHH
Confidence 111111111111100 0
Q ss_pred -------------------CCCC--CCCCc--------------cc---------------ccceeEEEEEEecchhhHH
Q 010357 202 -------------------IGSI--GEGNE--------------VS---------------NVKRQNLLLSATLNEKVNH 231 (512)
Q Consensus 202 -------------------~~~~--~~~~~--------------~~---------------~~~~~~i~~SAT~~~~~~~ 231 (512)
.+.. +..++ .. ..-.++.+||+|.......
T Consensus 298 ~rd~dYiV~dg~V~IVDefTGR~m~gRrwsdGLHQaIEAKEgv~I~~e~~TlAsIT~QnfFr~Y~kLsGMTGTA~te~~E 377 (925)
T PRK12903 298 KEDVEYIVRDGKIELVDQFTGRIMEGRSYSEGLQQAIQAKEMVEIEPETKTLATITYQNFFRLFKKLSGMTGTAKTEEQE 377 (925)
T ss_pred hcCCceEEECCEEEEEECCCCCCCCCCccchHHHHHHHHHcCCCCCCCceeeeeehHHHHHHhcchhhccCCCCHHHHHH
Confidence 0000 00000 00 0011456666665544444
Q ss_pred HHHhhcCCCeEEccCCCcCCCCccccccCCcccchhhhccCCCccccccccccccccceeeeEEEecCCchHHHHHHHHH
Q 010357 232 LAKISLETPVLIGLDEKKLPEDKSHVRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCGSRLAVLLSILK 311 (512)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~ 311 (512)
|.+.+.-....+.. ..+ ..+.-....+.....+|+.++++.+.
T Consensus 378 f~~iY~l~Vv~IPT-nkP------------------------------------~~R~D~~d~iy~t~~~K~~Aii~ei~ 420 (925)
T PRK12903 378 FIDIYNMRVNVVPT-NKP------------------------------------VIRKDEPDSIFGTKHAKWKAVVKEVK 420 (925)
T ss_pred HHHHhCCCEEECCC-CCC------------------------------------eeeeeCCCcEEEcHHHHHHHHHHHHH
Confidence 44443332222111 000 01111122334456688888888888
Q ss_pred hhhccccCceEEEEeecchhhhhHHHhhhhhcCCCCCCChhHHHhhhhccceeeecCCCCHHHHHHHHHhhhcC-CCcEE
Q 010357 312 HLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTE-KKALL 390 (512)
Q Consensus 312 ~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~l~g~~~~~~r~~~~~~f~~~-~~~vL 390 (512)
... ..+.|+||.|.+++.++.++..|... +++...+++.-...+-..+- ..| ...|-
T Consensus 421 ~~~--~~gqPVLVgT~SIe~SE~ls~~L~~~-----------------gi~h~vLNAk~~e~EA~IIa---~AG~~GaVT 478 (925)
T PRK12903 421 RVH--KKGQPILIGTAQVEDSETLHELLLEA-----------------NIPHTVLNAKQNAREAEIIA---KAGQKGAIT 478 (925)
T ss_pred HHH--hcCCCEEEEeCcHHHHHHHHHHHHHC-----------------CCCceeecccchhhHHHHHH---hCCCCCeEE
Confidence 764 45789999999999999999999987 67777777763333333332 344 34799
Q ss_pred EeecccccCCCCCCCc--------EEEEeCCCCChhHHHHhhhhcccCCCCccEEEecCccc
Q 010357 391 LSTDVAARGLDFPKVK--------CIIQYDSAGEATEYVHRVGRTARLGERGDSLLFLQPVE 444 (512)
Q Consensus 391 vaT~~~~~Gldip~~~--------~VI~~~~p~s~~~~~Q~~GRagR~g~~g~~~~~~~~~~ 444 (512)
|||+++++|.|+.--. +||....|.|..---|..||+||.|.+|.+..|++-+|
T Consensus 479 IATNMAGRGTDI~Lg~~V~~~GGLhVIgTerheSrRIDnQLrGRaGRQGDpGss~f~lSLeD 540 (925)
T PRK12903 479 IATNMAGRGTDIKLSKEVLELGGLYVLGTDKAESRRIDNQLRGRSGRQGDVGESRFFISLDD 540 (925)
T ss_pred EecccccCCcCccCchhHHHcCCcEEEecccCchHHHHHHHhcccccCCCCCcceEEEecch
Confidence 9999999999995222 89999999999988999999999999999999998776
No 134
>COG4889 Predicted helicase [General function prediction only]
Probab=99.81 E-value=1.7e-20 Score=184.54 Aligned_cols=381 Identities=18% Similarity=0.158 Sum_probs=202.0
Q ss_pred CcccCCCCHHHHHHHHHhcCCCCCcHHHHHHHHHhhcC----CCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCc
Q 010357 19 SFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSG----RHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGT 94 (512)
Q Consensus 19 ~~~~~~l~~~~~~~l~~~~~~~~~~~~Q~~~~~~~~~~----~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~ 94 (512)
.|+.+.. .++...+.-. .-..|||||++|++...++ ...=+.+.+|+|||++++-.+.... ..
T Consensus 141 DW~~f~p-~e~~~nl~l~-~~kk~R~hQq~Aid~a~~~F~~n~RGkLIMAcGTGKTfTsLkisEala-----------~~ 207 (1518)
T COG4889 141 DWDIFDP-TELQDNLPLK-KPKKPRPHQQTAIDAAKEGFSDNDRGKLIMACGTGKTFTSLKISEALA-----------AA 207 (1518)
T ss_pred ChhhcCc-cccccccccC-CCCCCChhHHHHHHHHHhhcccccCCcEEEecCCCccchHHHHHHHHh-----------hh
Confidence 4444432 3444444322 2335999999999988754 3456778899999999887665432 36
Q ss_pred eEEEEcCcHHHHHHHHHHHHHHHhhcCCcceEEEeCCCch--------------------HHHH---H--HHcCCCCEEE
Q 010357 95 FALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENR--------------------SKEK---A--RLRKGISILV 149 (512)
Q Consensus 95 ~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~g~~~--------------------~~~~---~--~~~~~~~Iiv 149 (512)
++|+++|+.+|..|..+.+..-.. .. +....++..... .... . ....+.-|++
T Consensus 208 ~iL~LvPSIsLLsQTlrew~~~~~-l~-~~a~aVcSD~kvsrs~eDik~sdl~~p~sT~~~~il~~~~~~~k~~~~~vvF 285 (1518)
T COG4889 208 RILFLVPSISLLSQTLREWTAQKE-LD-FRASAVCSDDKVSRSAEDIKASDLPIPVSTDLEDILSEMEHRQKANGLTVVF 285 (1518)
T ss_pred heEeecchHHHHHHHHHHHhhccC-cc-ceeEEEecCccccccccccccccCCCCCcccHHHHHHHHHHhhccCCcEEEE
Confidence 699999999999998877665432 11 222222221110 1111 1 1112356999
Q ss_pred eCChHHHHHHhhcCCCcCCceeEEEEcchhHHHhcCchHHHHHHHHHhccCCCCCCCCCCcccccceeEEEEEEecchhh
Q 010357 150 ATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKV 229 (512)
Q Consensus 150 ~Tp~~l~~~l~~~~~~~~~~~~~lV~DEah~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~ 229 (512)
+|++.+...-.. ....+..+++||+||||+..+......=..-+.+++... .-...+.+.||||+.--.
T Consensus 286 sTYQSl~~i~eA-Qe~G~~~fDliicDEAHRTtGa~~a~dd~saFt~vHs~~----------niKa~kRlYmTATPkiy~ 354 (1518)
T COG4889 286 STYQSLPRIKEA-QEAGLDEFDLIICDEAHRTTGATLAGDDKSAFTRVHSDQ----------NIKAAKRLYMTATPKIYS 354 (1518)
T ss_pred EcccchHHHHHH-HHcCCCCccEEEecchhccccceecccCcccceeecCcc----------hhHHHHhhhcccCchhhc
Confidence 999999775443 555667899999999999766533221111111111100 000345688999974111
Q ss_pred HHHHHhhc-CCCeEEccCCCcCCCCccccccCCcccchhhhccCCCccccccccccccccceeeeEEEecCC------ch
Q 010357 230 NHLAKISL-ETPVLIGLDEKKLPEDKSHVRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCG------SR 302 (512)
Q Consensus 230 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~k 302 (512)
+......- ....+.+.+.+. ..+...+--.............+..+.....+..+...+.........+ .|
T Consensus 355 eS~K~kAkd~s~~l~SMDDe~--~fGeef~rl~FgeAv~rdlLTDYKVmvlaVd~~~i~~~~~~~~~~~~~~L~~dd~~k 432 (1518)
T COG4889 355 ESSKAKAKDHSAELSSMDDEL--TFGEEFHRLGFGEAVERDLLTDYKVMVLAVDKEVIAGVLQSVLSGPSKGLALDDVSK 432 (1518)
T ss_pred hhhhhhhhhccceeeccchhh--hhchhhhcccHHHHHHhhhhccceEEEEEechhhhhhhhhhhccCcccccchhhhhh
Confidence 11111111 111222222221 0111111111111111111100100000000000111111000000001 11
Q ss_pred HHHHHHHHHhh-h----------ccccCceEEEEeecchhhhhHHHhhhhhcCCCCCCChhHHHhhhh--ccceeeecCC
Q 010357 303 LAVLLSILKHL-F----------DTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFL--RCKTFRLHGN 369 (512)
Q Consensus 303 ~~~l~~~l~~~-~----------~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~--~~~v~~l~g~ 369 (512)
..-...-+.+. . ...+..++|-||.+.++...+++.+....-.. ..++..-++ .+.+-++.|.
T Consensus 433 IvG~wnGlakr~g~~n~~~~~~~d~ap~~RAIaF~k~I~tSK~i~~sFe~Vve~Y----~~Elk~d~~nL~iSi~HvDGt 508 (1518)
T COG4889 433 IVGCWNGLAKRNGEDNDLKNIKADTAPMQRAIAFAKDIKTSKQIAESFETVVEAY----DEELKKDFKNLKISIDHVDGT 508 (1518)
T ss_pred hhhhhhhhhhhccccccccCCcCCchHHHHHHHHHHhhHHHHHHHHHHHHHHHHH----HHHHHhcCCCceEEeeccccc
Confidence 11111111110 0 01223478899999988888887775431100 112222223 4456667789
Q ss_pred CCHHHHHHHHHh---hhcCCCcEEEeecccccCCCCCCCcEEEEeCCCCChhHHHHhhhhcccCC
Q 010357 370 MKQEDRRTTFGA---FKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRVGRTARLG 431 (512)
Q Consensus 370 ~~~~~r~~~~~~---f~~~~~~vLvaT~~~~~Gldip~~~~VI~~~~p~s~~~~~Q~~GRagR~g 431 (512)
|+..+|...+.. |...+++||-.-.++++|||+|.++-||.+++-.+..+.+|.+||+.|..
T Consensus 509 mNal~R~~l~~l~~~~~~neckIlSNaRcLSEGVDVPaLDsViFf~pr~smVDIVQaVGRVMRKa 573 (1518)
T COG4889 509 MNALERLDLLELKNTFEPNECKILSNARCLSEGVDVPALDSVIFFDPRSSMVDIVQAVGRVMRKA 573 (1518)
T ss_pred ccHHHHHHHHhccCCCCcchheeeccchhhhcCCCccccceEEEecCchhHHHHHHHHHHHHHhC
Confidence 999999665543 45677889988899999999999999999999999999999999999974
No 135
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=99.80 E-value=1.5e-17 Score=168.67 Aligned_cols=134 Identities=21% Similarity=0.238 Sum_probs=98.3
Q ss_pred HHHhcCCCCCcHHHHHHHHHhhcCCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcHHHHHHHHHH
Q 010357 33 LRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEI 112 (512)
Q Consensus 33 l~~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~ 112 (512)
....+|+. |++.|.-+.-.+.+ .-+..+.||.|||+++.+|+.-.... |..|-|++++..||.+-+++
T Consensus 69 ~~R~lG~r-~ydvQlig~l~L~~--G~IaEm~TGEGKTL~a~l~ayl~aL~---------G~~VhVvT~NdyLA~RD~e~ 136 (870)
T CHL00122 69 SFRTLGLR-HFDVQLIGGLVLND--GKIAEMKTGEGKTLVATLPAYLNALT---------GKGVHIVTVNDYLAKRDQEW 136 (870)
T ss_pred HHHHhCCC-CCchHhhhhHhhcC--CccccccCCCCchHHHHHHHHHHHhc---------CCceEEEeCCHHHHHHHHHH
Confidence 33445776 99999887655544 48899999999999999998654444 77799999999999999999
Q ss_pred HHHHHhhcCCcceEEEeCCCchHHHHHHHcCCCCEEEeCChHH-HHHHhhc-----CCCcCCceeEEEEcchhHH
Q 010357 113 LHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRL-LDHLKHT-----SSFLHTNLRWIIFDEADRI 181 (512)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~Iiv~Tp~~l-~~~l~~~-----~~~~~~~~~~lV~DEah~l 181 (512)
+..+...+| ..+++..++.+....... ..+||+++|..-+ ++.|... .......+.+.|+||+|.+
T Consensus 137 m~pvy~~LG-Lsvg~i~~~~~~~err~a--Y~~DItYgTn~e~gFDyLRDnm~~~~~~~v~r~~~faIVDEvDSi 208 (870)
T CHL00122 137 MGQIYRFLG-LTVGLIQEGMSSEERKKN--YLKDITYVTNSELGFDYLRDNMALSLSDVVQRPFNYCIIDEVDSI 208 (870)
T ss_pred HHHHHHHcC-CceeeeCCCCChHHHHHh--cCCCCEecCCccccccchhhccCcChHHhhccccceeeeecchhh
Confidence 999999888 555666666555443333 3579999999654 2333221 1123456889999999984
No 136
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=99.80 E-value=3.4e-19 Score=174.30 Aligned_cols=138 Identities=19% Similarity=0.288 Sum_probs=112.1
Q ss_pred CchHHHHHHHHHhhhccccCceEEEEeecchhhhhHHHhhhhhcCCCCCCChhHHHhhhhccceeeecCCCCHHHHHHHH
Q 010357 300 GSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTF 379 (512)
Q Consensus 300 ~~k~~~l~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~l~g~~~~~~r~~~~ 379 (512)
+.|...|..+|..+ ...+.++++|.........+--.|.-. +++...+.|.....+|..++
T Consensus 760 SgK~r~L~~LLp~~--k~~G~RVLiFSQFTqmLDILE~~L~~l-----------------~~~ylRLDGsTqV~~RQ~lI 820 (941)
T KOG0389|consen 760 SGKCRKLKELLPKI--KKKGDRVLIFSQFTQMLDILEVVLDTL-----------------GYKYLRLDGSTQVNDRQDLI 820 (941)
T ss_pred hhhHhHHHHHHHHH--hhcCCEEEEeeHHHHHHHHHHHHHHhc-----------------CceEEeecCCccchHHHHHH
Confidence 45566666666665 345689999999988887777777766 88999999999999999999
Q ss_pred HhhhcCC--CcEEEeecccccCCCCCCCcEEEEeCCCCChhHHHHhhhhcccCCCCcc--EEEecCccc-hhHHHHHHHc
Q 010357 380 GAFKTEK--KALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRVGRTARLGERGD--SLLFLQPVE-MDYLQDLEKH 454 (512)
Q Consensus 380 ~~f~~~~--~~vLvaT~~~~~Gldip~~~~VI~~~~p~s~~~~~Q~~GRagR~g~~g~--~~~~~~~~~-~~~~~~l~~~ 454 (512)
+.|..++ .-.|++|.+.+.|||+.++++||.+|...+|-+=.|+--||.|.|+... ++-+++++. .+.+.++.+.
T Consensus 821 d~Fn~d~difVFLLSTKAGG~GINLt~An~VIihD~dFNP~dD~QAEDRcHRvGQtkpVtV~rLItk~TIEE~I~~lA~~ 900 (941)
T KOG0389|consen 821 DEFNTDKDIFVFLLSTKAGGFGINLTCANTVIIHDIDFNPYDDKQAEDRCHRVGQTKPVTVYRLITKSTIEEGILRLAKT 900 (941)
T ss_pred HhhccCCceEEEEEeeccCcceecccccceEEEeecCCCCcccchhHHHHHhhCCcceeEEEEEEecCcHHHHHHHHHHH
Confidence 9999765 2358999999999999999999999999999999999999999998764 455677655 4566666664
Q ss_pred CC
Q 010357 455 GV 456 (512)
Q Consensus 455 ~~ 456 (512)
.+
T Consensus 901 KL 902 (941)
T KOG0389|consen 901 KL 902 (941)
T ss_pred hh
Confidence 44
No 137
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.79 E-value=2e-18 Score=176.24 Aligned_cols=368 Identities=16% Similarity=0.210 Sum_probs=236.8
Q ss_pred ccccccccccCccCCcccCCCCHHHHHHHHHhcCCCCCcHHHHHHHHHhh-cCCCEEEEccCCChHhHHHHHHHHHHHhh
Q 010357 5 SKKKETVKEIFASCSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVIL-SGRHVLVNAATGTGKTVAYLAPIINHLQS 83 (512)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~Q~~~~~~~~-~~~~~lv~~pTGsGKT~~~~~~~~~~~~~ 83 (512)
.+|-+..-|++.-.+..-+++.-.....+.. ...++|.++++.+. ++.++++.+|+|||||+++-+.++. .
T Consensus 1112 pek~p~pt~lld~~~~~~~~l~N~~~~~lf~-----~~n~iqtqVf~~~y~~nd~v~vga~~gsgkt~~ae~a~l~---~ 1183 (1674)
T KOG0951|consen 1112 PEKYPPPTELLDLQPLPVSALRNPSFETLFQ-----DFNPIQTQVFTSLYNTNDNVLVGAPNGSGKTACAELALLR---P 1183 (1674)
T ss_pred cccCCCCchhhhccccchhccCCcchhhhcc-----ccCCceEEEEeeeecccceEEEecCCCCchhHHHHHHhcC---C
Confidence 3444445555555555555554444444422 23889999998877 4568999999999999999887765 1
Q ss_pred cCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHHhhcCCcceEEEeCCCchHHHHHHHcCCCCEEEeCChHHHHHHhhcC
Q 010357 84 YSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTS 163 (512)
Q Consensus 84 ~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~ 163 (512)
....++++++|..+.+..++..+..-+..........+ +|+..-+.+ +....+|+|+||+++-.+ .
T Consensus 1184 -------~~~~~~vyi~p~~~i~~~~~~~w~~~f~~~~G~~~~~l-~ge~s~~lk--l~~~~~vii~tpe~~d~l-q--- 1249 (1674)
T KOG0951|consen 1184 -------DTIGRAVYIAPLEEIADEQYRDWEKKFSKLLGLRIVKL-TGETSLDLK--LLQKGQVIISTPEQWDLL-Q--- 1249 (1674)
T ss_pred -------ccceEEEEecchHHHHHHHHHHHHHhhccccCceEEec-CCccccchH--HhhhcceEEechhHHHHH-h---
Confidence 34677999999999998888776655544333343333 444443332 334458999999998655 2
Q ss_pred CCcCCceeEEEEcchhHHHhcCch------HHHHHHHHHhccCCCCCCCCCCcccccceeEEEEEEecchhhHHHHHhhc
Q 010357 164 SFLHTNLRWIIFDEADRILELGFG------KEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISL 237 (512)
Q Consensus 164 ~~~~~~~~~lV~DEah~l~~~~~~------~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~ 237 (512)
..+.+++.|.||.|.+.+. .+ ..++.+...+-+ +.+++.+|..+.+.-+. .++
T Consensus 1250 --~iQ~v~l~i~d~lh~igg~-~g~v~evi~S~r~ia~q~~k---------------~ir~v~ls~~lana~d~---ig~ 1308 (1674)
T KOG0951|consen 1250 --SIQQVDLFIVDELHLIGGV-YGAVYEVICSMRYIASQLEK---------------KIRVVALSSSLANARDL---IGA 1308 (1674)
T ss_pred --hhhhcceEeeehhhhhccc-CCceEEEEeeHHHHHHHHHh---------------heeEEEeehhhccchhh---ccc
Confidence 3457899999999987643 22 126666666655 88999999988765443 334
Q ss_pred CCCeEEccCCCcCCCCccccccCCcccchhhhccCCCccccccccccccccce-eeeEEEecCCchHHHH----HHHHHh
Q 010357 238 ETPVLIGLDEKKLPEDKSHVRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQL-VQRYVKVPCGSRLAVL----LSILKH 312 (512)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~k~~~l----~~~l~~ 312 (512)
....++.+.+...+ .|..+ .+.+-...-......+ +..+.+
T Consensus 1309 s~~~v~Nf~p~~R~----------------------------------~Pl~i~i~~~~~~~~~~~~~am~~~~~~ai~~ 1354 (1674)
T KOG0951|consen 1309 SSSGVFNFSPSVRP----------------------------------VPLEIHIQSVDISHFESRMLAMTKPTYTAIVR 1354 (1674)
T ss_pred cccceeecCcccCC----------------------------------CceeEEEEEeccchhHHHHHHhhhhHHHHHHH
Confidence 44444444333211 11111 1222111111222222 222333
Q ss_pred hhccccCceEEEEeecchhhhhHHHhhhhhcCCCC--------CCChhHHHhhhhccceeeecCCCCHHHHHHHHHhhhc
Q 010357 313 LFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPH--------SQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKT 384 (512)
Q Consensus 313 ~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~--------~~~~~~~~~~~~~~~v~~l~g~~~~~~r~~~~~~f~~ 384 (512)
+ ...+.+++||+++++.+..++..+........ ..-+..+++ -+..++. |.+++..+...+-..|..
T Consensus 1355 ~--a~~~k~~~vf~p~rk~~~~~a~~~~~~s~~~~~~~l~~~~e~~~~~l~e-~l~~gvg--~e~~s~~d~~iv~~l~e~ 1429 (1674)
T KOG0951|consen 1355 H--AGNRKPAIVFLPTRKHARLVAVDLVTFSHADEPDYLLSELEECDETLRE-SLKHGVG--HEGLSSNDQEIVQQLFEA 1429 (1674)
T ss_pred H--hcCCCCeEEEeccchhhhhhhhccchhhccCcHHHHHHHHhcchHhhhh-ccccccc--ccccCcchHHHHHHHHhc
Confidence 3 24568999999999999998877765432221 001112222 1133333 999999999999999999
Q ss_pred CCCcEEEeecccccCCCCCCCcEEEEeC-----------CCCChhHHHHhhhhcccCCCCccEEEecCccchhHHHHHHH
Q 010357 385 EKKALLLSTDVAARGLDFPKVKCIIQYD-----------SAGEATEYVHRVGRTARLGERGDSLLFLQPVEMDYLQDLEK 453 (512)
Q Consensus 385 ~~~~vLvaT~~~~~Gldip~~~~VI~~~-----------~p~s~~~~~Q~~GRagR~g~~g~~~~~~~~~~~~~~~~l~~ 453 (512)
|.++|+|.... .+|+-.. .+.||-.+ .+-+.....|+.|+|.| .|.|++++...+..+++....
T Consensus 1430 g~i~v~v~s~~-~~~~~~~-~~lVvvmgt~~ydg~e~~~~~y~i~~ll~m~G~a~~---~~k~vi~~~~~~k~yykkfl~ 1504 (1674)
T KOG0951|consen 1430 GAIQVCVMSRD-CYGTKLK-AHLVVVMGTQYYDGKEHSYEDYPIAELLQMVGLASG---AGKCVIMCHTPKKEYYKKFLY 1504 (1674)
T ss_pred CcEEEEEEEcc-ccccccc-ceEEEEecceeecccccccccCchhHHHHHhhhhcC---CccEEEEecCchHHHHHHhcc
Confidence 99999998877 8888874 45555332 34568899999999988 589999999999999988876
Q ss_pred cCCCCC
Q 010357 454 HGVSLT 459 (512)
Q Consensus 454 ~~~~~~ 459 (512)
..++.+
T Consensus 1505 e~lPve 1510 (1674)
T KOG0951|consen 1505 EPLPVE 1510 (1674)
T ss_pred CcCchH
Confidence 444433
No 138
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.79 E-value=1.4e-18 Score=143.40 Aligned_cols=121 Identities=32% Similarity=0.583 Sum_probs=110.6
Q ss_pred CchHHHHHHHHHhhhccccCceEEEEeecchhhhhHHHhhhhhcCCCCCCChhHHHhhhhccceeeecCCCCHHHHHHHH
Q 010357 300 GSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTF 379 (512)
Q Consensus 300 ~~k~~~l~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~l~g~~~~~~r~~~~ 379 (512)
+.|...+.+.+.+... .++++||||++...++.+++.|.+. +.++..+||+++..+|..+.
T Consensus 11 ~~k~~~i~~~i~~~~~--~~~~~lvf~~~~~~~~~~~~~l~~~-----------------~~~~~~~~~~~~~~~~~~~~ 71 (131)
T cd00079 11 DEKLEALLELLKEHLK--KGGKVLIFCPSKKMLDELAELLRKP-----------------GIKVAALHGDGSQEEREEVL 71 (131)
T ss_pred HHHHHHHHHHHHhccc--CCCcEEEEeCcHHHHHHHHHHHHhc-----------------CCcEEEEECCCCHHHHHHHH
Confidence 3688888888887532 5689999999999999999999874 67899999999999999999
Q ss_pred HhhhcCCCcEEEeecccccCCCCCCCcEEEEeCCCCChhHHHHhhhhcccCCCCccEEEe
Q 010357 380 GAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRVGRTARLGERGDSLLF 439 (512)
Q Consensus 380 ~~f~~~~~~vLvaT~~~~~Gldip~~~~VI~~~~p~s~~~~~Q~~GRagR~g~~g~~~~~ 439 (512)
+.|.++...+|++|+++++|+|+|++++||++++|++...+.|++||++|.|+.|.++++
T Consensus 72 ~~f~~~~~~ili~t~~~~~G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~~~~ 131 (131)
T cd00079 72 KDFREGEIVVLVATDVIARGIDLPNVSVVINYDLPWSPSSYLQRIGRAGRAGQKGTAILL 131 (131)
T ss_pred HHHHcCCCcEEEEcChhhcCcChhhCCEEEEeCCCCCHHHheecccccccCCCCceEEeC
Confidence 999999999999999999999999999999999999999999999999999998887764
No 139
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=99.77 E-value=2.7e-16 Score=159.28 Aligned_cols=131 Identities=21% Similarity=0.233 Sum_probs=99.7
Q ss_pred hcCCCCCcHHHHHHHHHhhcCCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHH
Q 010357 36 RLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHK 115 (512)
Q Consensus 36 ~~~~~~~~~~Q~~~~~~~~~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~ 115 (512)
..|.. |++.|.-+.-.+.+| -|..+.||-|||+++.+|+.-.... |..+-+++++..||..-++++..
T Consensus 81 ~lG~r-~ydVQliGgl~Lh~G--~IAEM~TGEGKTL~atlpaylnAL~---------GkgVhVVTvNdYLA~RDae~m~~ 148 (939)
T PRK12902 81 VLGMR-HFDVQLIGGMVLHEG--QIAEMKTGEGKTLVATLPSYLNALT---------GKGVHVVTVNDYLARRDAEWMGQ 148 (939)
T ss_pred HhCCC-cchhHHHhhhhhcCC--ceeeecCCCChhHHHHHHHHHHhhc---------CCCeEEEeCCHHHHHhHHHHHHH
Confidence 34775 899998877666555 7889999999999999998876655 77799999999999999999999
Q ss_pred HHhhcCCcceEEEeCCCchHHHHHHHcCCCCEEEeCChHH-----HHHHhh-cCCCcCCceeEEEEcchhHH
Q 010357 116 LLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRL-----LDHLKH-TSSFLHTNLRWIIFDEADRI 181 (512)
Q Consensus 116 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~Iiv~Tp~~l-----~~~l~~-~~~~~~~~~~~lV~DEah~l 181 (512)
+...+| ..+++..++.+... ......+||+++|+..| .+.+.. ........+.+.|+||+|.+
T Consensus 149 vy~~LG-Ltvg~i~~~~~~~e--rr~aY~~DItYgTn~e~gFDYLRDnm~~~~~~~vqR~~~faIVDEvDSI 217 (939)
T PRK12902 149 VHRFLG-LSVGLIQQDMSPEE--RKKNYACDITYATNSELGFDYLRDNMATDISEVVQRPFNYCVIDEVDSI 217 (939)
T ss_pred HHHHhC-CeEEEECCCCChHH--HHHhcCCCeEEecCCcccccchhhhhcccccccccCccceEEEecccce
Confidence 999888 45566655544433 23345789999999876 443332 22234567889999999984
No 140
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.75 E-value=9.4e-16 Score=164.51 Aligned_cols=124 Identities=15% Similarity=0.264 Sum_probs=87.5
Q ss_pred HHHHHHHHHhhhccccCceEEEEeecchhhhhHHHhhhhhcCCCCCCChhHHHhhhhccceeeecCCCCHHHHHHHHHhh
Q 010357 303 LAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAF 382 (512)
Q Consensus 303 ~~~l~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~l~g~~~~~~r~~~~~~f 382 (512)
...+.+.|..+.. ..+++++|+++|.+..+.+++.|....... ++.+.. . +++...|.+++++|
T Consensus 737 ~~~la~~i~~l~~-~~~g~~LVLFtSy~~l~~v~~~l~~~~~~~-------------~~~ll~-Q-g~~~~~r~~l~~~F 800 (928)
T PRK08074 737 IEEVAAYIAKIAK-ATKGRMLVLFTSYEMLKKTYYNLKNEEELE-------------GYVLLA-Q-GVSSGSRARLTKQF 800 (928)
T ss_pred HHHHHHHHHHHHH-hCCCCEEEEECCHHHHHHHHHHHhhccccc-------------CceEEe-c-CCCCCCHHHHHHHH
Confidence 3456666665543 345799999999999999999987642100 122222 2 44445689999999
Q ss_pred hcCCCcEEEeecccccCCCCCC--CcEEEEeCCCC------------------------------ChhHHHHhhhhcccC
Q 010357 383 KTEKKALLLSTDVAARGLDFPK--VKCIIQYDSAG------------------------------EATEYVHRVGRTARL 430 (512)
Q Consensus 383 ~~~~~~vLvaT~~~~~Gldip~--~~~VI~~~~p~------------------------------s~~~~~Q~~GRagR~ 430 (512)
++++..||++|..+.+|||+|+ +.+||....|. -...+.|.+||.-|.
T Consensus 801 ~~~~~~iLlG~~sFwEGVD~pg~~l~~viI~kLPF~~p~dp~~~a~~~~~~~~g~~~F~~~~lP~A~~~lkQg~GRlIRs 880 (928)
T PRK08074 801 QQFDKAILLGTSSFWEGIDIPGDELSCLVIVRLPFAPPDQPVMEAKSEWAKEQGENPFQELSLPQAVLRFKQGFGRLIRT 880 (928)
T ss_pred HhcCCeEEEecCcccCccccCCCceEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHhhhhhhccc
Confidence 9998899999999999999997 57888877664 122347999999998
Q ss_pred CCCccEEEecCc
Q 010357 431 GERGDSLLFLQP 442 (512)
Q Consensus 431 g~~g~~~~~~~~ 442 (512)
....-+++++++
T Consensus 881 ~~D~G~v~ilD~ 892 (928)
T PRK08074 881 ETDRGTVFVLDR 892 (928)
T ss_pred CCceEEEEEecC
Confidence 755434555554
No 141
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.75 E-value=3.1e-18 Score=126.81 Aligned_cols=72 Identities=32% Similarity=0.671 Sum_probs=70.7
Q ss_pred ccceeeecCCCCHHHHHHHHHhhhcCCCcEEEeecccccCCCCCCCcEEEEeCCCCChhHHHHhhhhcccCC
Q 010357 360 RCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRVGRTARLG 431 (512)
Q Consensus 360 ~~~v~~l~g~~~~~~r~~~~~~f~~~~~~vLvaT~~~~~Gldip~~~~VI~~~~p~s~~~~~Q~~GRagR~g 431 (512)
++.+..+||+++..+|..+++.|++++..+||||+++++|+|+|.+++||++++|+|+..|.|++||++|.|
T Consensus 7 ~~~~~~i~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gid~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~g 78 (78)
T PF00271_consen 7 GIKVAIIHGDMSQKERQEILKKFNSGEIRVLIATDILGEGIDLPDASHVIFYDPPWSPEEYIQRIGRAGRIG 78 (78)
T ss_dssp TSSEEEESTTSHHHHHHHHHHHHHTTSSSEEEESCGGTTSSTSTTESEEEESSSESSHHHHHHHHTTSSTTT
T ss_pred CCcEEEEECCCCHHHHHHHHHHhhccCceEEEeeccccccccccccccccccccCCCHHHHHHHhhcCCCCC
Confidence 889999999999999999999999999999999999999999999999999999999999999999999986
No 142
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.74 E-value=9.4e-18 Score=147.44 Aligned_cols=154 Identities=25% Similarity=0.276 Sum_probs=103.6
Q ss_pred CCcHHHHHHHHHhhc-------CCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcHHHHHHHHHHH
Q 010357 41 APTKVQAQAIPVILS-------GRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEIL 113 (512)
Q Consensus 41 ~~~~~Q~~~~~~~~~-------~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~ 113 (512)
+|+++|.+++..+.+ .+++++.+|||||||++++..+..... ++++++|+..|+.|+.+.+
T Consensus 3 ~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~~------------~~l~~~p~~~l~~Q~~~~~ 70 (184)
T PF04851_consen 3 KLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELAR------------KVLIVAPNISLLEQWYDEF 70 (184)
T ss_dssp EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHHC------------EEEEEESSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhcccc------------ceeEecCHHHHHHHHHHHH
Confidence 499999999998873 578999999999999999987777653 5999999999999999999
Q ss_pred HHHHhhcCCc----------ceEEEeCCCchHHHHHHHcCCCCEEEeCChHHHHHHhhcC----------CCcCCceeEE
Q 010357 114 HKLLHRFHWI----------VPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTS----------SFLHTNLRWI 173 (512)
Q Consensus 114 ~~~~~~~~~~----------~~~~~~~g~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~----------~~~~~~~~~l 173 (512)
..+....... ......................+++++|.+.+........ .......++|
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v 150 (184)
T PF04851_consen 71 DDFGSEKYNFFEKSIKPAYDSKEFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKNKFDLV 150 (184)
T ss_dssp HHHSTTSEEEEE--GGGCCE-SEEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGGSESEE
T ss_pred HHhhhhhhhhcccccccccccccccccccccccccccccccccchhhHHHHHHhhcccccccccchhhhhhhccccCCEE
Confidence 6664321110 0011111112222233334567899999999988765421 1233467899
Q ss_pred EEcchhHHHhcCchHHHHHHHHHhccCCCCCCCCCCcccccceeEEEEEEecc
Q 010357 174 IFDEADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLN 226 (512)
Q Consensus 174 V~DEah~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~ 226 (512)
|+||||++....- ...++. .+ ...+++|||||.
T Consensus 151 I~DEaH~~~~~~~---~~~i~~-~~----------------~~~~l~lTATp~ 183 (184)
T PF04851_consen 151 IIDEAHHYPSDSS---YREIIE-FK----------------AAFILGLTATPF 183 (184)
T ss_dssp EEETGGCTHHHHH---HHHHHH-SS----------------CCEEEEEESS-S
T ss_pred EEehhhhcCCHHH---HHHHHc-CC----------------CCeEEEEEeCcc
Confidence 9999998655321 333333 21 778999999985
No 143
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=99.73 E-value=1.5e-16 Score=150.24 Aligned_cols=281 Identities=18% Similarity=0.177 Sum_probs=173.3
Q ss_pred CCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHHhhcCCcceEEEeCCCchHH
Q 010357 57 RHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSK 136 (512)
Q Consensus 57 ~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 136 (512)
+-++-+|||.||||.-++.-.. + ....++.-|.|-||.++++.+.+..-. ..+..|++...
T Consensus 192 kIi~H~GPTNSGKTy~ALqrl~----~---------aksGvycGPLrLLA~EV~~r~na~gip------CdL~TGeE~~~ 252 (700)
T KOG0953|consen 192 KIIMHVGPTNSGKTYRALQRLK----S---------AKSGVYCGPLRLLAHEVYDRLNALGIP------CDLLTGEERRF 252 (700)
T ss_pred eEEEEeCCCCCchhHHHHHHHh----h---------hccceecchHHHHHHHHHHHhhhcCCC------ccccccceeee
Confidence 3456699999999987654433 3 445799999999999999999987432 22344444322
Q ss_pred HHHHHcCCCCEEEeCChHHHHHHhhcCCCcCCceeEEEEcchhHHHhcCchHHHHHHHHHhccCCCCCCCCCCcccccce
Q 010357 137 EKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKR 216 (512)
Q Consensus 137 ~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lV~DEah~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 216 (512)
.... ...++.+-+|.|...- -..+++.|+||++.|.+..++......+-.+... ..
T Consensus 253 ~~~~-~~~a~hvScTVEM~sv---------~~~yeVAViDEIQmm~Dp~RGwAWTrALLGl~Ad--------------Ei 308 (700)
T KOG0953|consen 253 VLDN-GNPAQHVSCTVEMVSV---------NTPYEVAVIDEIQMMRDPSRGWAWTRALLGLAAD--------------EI 308 (700)
T ss_pred cCCC-CCcccceEEEEEEeec---------CCceEEEEehhHHhhcCcccchHHHHHHHhhhhh--------------hh
Confidence 2111 1235677788766521 1267899999999999988887766665544321 11
Q ss_pred eEEEEEEecchhhHHHHHhhcCCCeEEccCCCcCCCCccccccCCcccchhhhccCCCccccccccccccccceeeeEEE
Q 010357 217 QNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLPEDKSHVRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVK 296 (512)
Q Consensus 217 ~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (512)
++-+=-|.+ +-++.+.+-......+ ..|..
T Consensus 309 HLCGepsvl-dlV~~i~k~TGd~vev-------------------------------------------------~~YeR 338 (700)
T KOG0953|consen 309 HLCGEPSVL-DLVRKILKMTGDDVEV-------------------------------------------------REYER 338 (700)
T ss_pred hccCCchHH-HHHHHHHhhcCCeeEE-------------------------------------------------Eeecc
Confidence 111111111 1122222211111111 11111
Q ss_pred ecCCchHHHHHHHHHhhhccccCceEEEEeecchhhhhHHHhhhhhcCCCCCCChhHHHhhhhccceeeecCCCCHHHHH
Q 010357 297 VPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRR 376 (512)
Q Consensus 297 ~~~~~k~~~l~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~l~g~~~~~~r~ 376 (512)
..+-.-...+..-+. +-..+.++| |-+++..-.+...+.+.+ +.++..+.|+++++.|.
T Consensus 339 l~pL~v~~~~~~sl~----nlk~GDCvV-~FSkk~I~~~k~kIE~~g----------------~~k~aVIYGsLPPeTr~ 397 (700)
T KOG0953|consen 339 LSPLVVEETALGSLS----NLKPGDCVV-AFSKKDIFTVKKKIEKAG----------------NHKCAVIYGSLPPETRL 397 (700)
T ss_pred cCcceehhhhhhhhc----cCCCCCeEE-EeehhhHHHHHHHHHHhc----------------CcceEEEecCCCCchhH
Confidence 111000112222222 223455544 445555556666666552 44588999999999999
Q ss_pred HHHHhhhc--CCCcEEEeecccccCCCCCCCcEEEEeCC---------CCChhHHHHhhhhcccCCC---CccEEEecCc
Q 010357 377 TTFGAFKT--EKKALLLSTDVAARGLDFPKVKCIIQYDS---------AGEATEYVHRVGRTARLGE---RGDSLLFLQP 442 (512)
Q Consensus 377 ~~~~~f~~--~~~~vLvaT~~~~~Gldip~~~~VI~~~~---------p~s~~~~~Q~~GRagR~g~---~g~~~~~~~~ 442 (512)
+-...|.+ ++.+||||||++++|+|+ +++.||.++. +.+..+..|.+|||||.|. .|.+..+..
T Consensus 398 aQA~~FNd~~~e~dvlVAsDAIGMGLNL-~IrRiiF~sl~Kysg~e~~~it~sqikQIAGRAGRf~s~~~~G~vTtl~~- 475 (700)
T KOG0953|consen 398 AQAALFNDPSNECDVLVASDAIGMGLNL-NIRRIIFYSLIKYSGRETEDITVSQIKQIAGRAGRFGSKYPQGEVTTLHS- 475 (700)
T ss_pred HHHHHhCCCCCccceEEeeccccccccc-ceeEEEEeecccCCcccceeccHHHHHHHhhcccccccCCcCceEEEeeH-
Confidence 99999998 889999999999999999 7999998874 3477788999999999874 355555543
Q ss_pred cchhHHHHHHH
Q 010357 443 VEMDYLQDLEK 453 (512)
Q Consensus 443 ~~~~~~~~l~~ 453 (512)
.|...+++..+
T Consensus 476 eDL~~L~~~l~ 486 (700)
T KOG0953|consen 476 EDLKLLKRILK 486 (700)
T ss_pred hhHHHHHHHHh
Confidence 45555555544
No 144
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.72 E-value=3.1e-16 Score=131.42 Aligned_cols=144 Identities=46% Similarity=0.604 Sum_probs=106.8
Q ss_pred CCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHHhhcCCcceEEEeCCCchHH
Q 010357 57 RHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSK 136 (512)
Q Consensus 57 ~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 136 (512)
+++++.+|||+|||.+++.++...... ....++++++|++.++.|+.+.+...... ........++.....
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~~~-------~~~~~~lv~~p~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 71 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLDS-------LKGGQVLVLAPTRELANQVAERLKELFGE--GIKVGYLIGGTSIKQ 71 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHhc-------ccCCCEEEEcCcHHHHHHHHHHHHHHhhC--CcEEEEEecCcchhH
Confidence 468999999999999999998887654 23567999999999999999998887653 344556666666555
Q ss_pred HHHHHcCCCCEEEeCChHHHHHHhhcCCCcCCceeEEEEcchhHHHhcCchHHHHHHHHHhccCCCCCCCCCCcccccce
Q 010357 137 EKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKR 216 (512)
Q Consensus 137 ~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lV~DEah~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 216 (512)
.........+|+++|++.+...+.... .....++++|+||+|.+.................. ..
T Consensus 72 ~~~~~~~~~~i~i~t~~~~~~~~~~~~-~~~~~~~~iiiDE~h~~~~~~~~~~~~~~~~~~~~---------------~~ 135 (144)
T cd00046 72 QEKLLSGKTDIVVGTPGRLLDELERLK-LSLKKLDLLILDEAHRLLNQGFGLLGLKILLKLPK---------------DR 135 (144)
T ss_pred HHHHhcCCCCEEEECcHHHHHHHHcCC-cchhcCCEEEEeCHHHHhhcchHHHHHHHHhhCCc---------------cc
Confidence 555556778999999999988776532 33457889999999998776544432112222221 77
Q ss_pred eEEEEEEec
Q 010357 217 QNLLLSATL 225 (512)
Q Consensus 217 ~~i~~SAT~ 225 (512)
+++++|||+
T Consensus 136 ~~i~~saTp 144 (144)
T cd00046 136 QVLLLSATP 144 (144)
T ss_pred eEEEEeccC
Confidence 899999996
No 145
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=99.71 E-value=1.3e-14 Score=145.96 Aligned_cols=91 Identities=9% Similarity=0.031 Sum_probs=66.7
Q ss_pred HHHHHHHhhhccccCceEEEEeecchhhhhHHHhhhhhcCCCCCCChhHHHhhhhccceeeecCCCCHHHHHHHHHhhhc
Q 010357 305 VLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKT 384 (512)
Q Consensus 305 ~l~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~l~g~~~~~~r~~~~~~f~~ 384 (512)
.+.+.+..++.. .+++++|.+.|....+.+++.+.... ..++. +.|+.+ .+..++++|++
T Consensus 457 ~~~~~~~~~~~~-~~G~~lvLfTS~~~~~~~~~~l~~~l----------------~~~~l-~qg~~~--~~~~l~~~f~~ 516 (636)
T TIGR03117 457 NVSLSTAAILRK-AQGGTLVLTTAFSHISAIGQLVELGI----------------PAEIV-IQSEKN--RLASAEQQFLA 516 (636)
T ss_pred HHHHHHHHHHHH-cCCCEEEEechHHHHHHHHHHHHhhc----------------CCCEE-EeCCCc--cHHHHHHHHHH
Confidence 355555555433 35789999999999999999986642 33444 466532 45678888887
Q ss_pred C----CCcEEEeecccccCCCC--------CC--CcEEEEeCCCC
Q 010357 385 E----KKALLLSTDVAARGLDF--------PK--VKCIIQYDSAG 415 (512)
Q Consensus 385 ~----~~~vLvaT~~~~~Gldi--------p~--~~~VI~~~~p~ 415 (512)
. ...||++|+.+.+|||+ |+ +++||+...|.
T Consensus 517 ~~~~~~~~vL~gt~sfweGvDv~~~~~~p~~G~~Ls~ViI~kLPF 561 (636)
T TIGR03117 517 LYANGIQPVLIAAGGAWTGIDLTHKPVSPDKDNLLTDLIITCAPF 561 (636)
T ss_pred hhcCCCCcEEEeCCccccccccCCccCCCCCCCcccEEEEEeCCC
Confidence 4 68999999999999999 33 88899888774
No 146
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=99.69 E-value=1.7e-15 Score=146.82 Aligned_cols=142 Identities=18% Similarity=0.251 Sum_probs=113.9
Q ss_pred ecCCchHHHHHHHHHhhhccccCceEEEEeecchhhhhHHHhhhhhcCCCCCCChhHHHhhhhccceeeecCCCCHHHHH
Q 010357 297 VPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRR 376 (512)
Q Consensus 297 ~~~~~k~~~l~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~l~g~~~~~~r~ 376 (512)
...+.|+..+++.+..++ .....+++|..........+...+... +.....+||.....+|.
T Consensus 725 ~r~S~Ki~~~l~~le~i~-~~skeK~viVSQwtsvLniv~~hi~~~-----------------g~~y~si~Gqv~vK~Rq 786 (901)
T KOG4439|consen 725 DRPSCKIAMVLEILETIL-TSSKEKVVIVSQWTSVLNIVRKHIQKG-----------------GHIYTSITGQVLVKDRQ 786 (901)
T ss_pred ccchhHHHHHHHHHHHHh-hcccceeeehhHHHHHHHHHHHHHhhC-----------------CeeeeeecCccchhHHH
Confidence 345678888888888773 445678888877777777888888877 77788899999999999
Q ss_pred HHHHhhhcCC--Cc-EEEeecccccCCCCCCCcEEEEeCCCCChhHHHHhhhhcccCCCCccEEEe---cCccchhHHHH
Q 010357 377 TTFGAFKTEK--KA-LLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRVGRTARLGERGDSLLF---LQPVEMDYLQD 450 (512)
Q Consensus 377 ~~~~~f~~~~--~~-vLvaT~~~~~Gldip~~~~VI~~~~p~s~~~~~Q~~GRagR~g~~g~~~~~---~~~~~~~~~~~ 450 (512)
.+++.|...+ .+ .|++-.+.+.|+|+-+.+|+|..|+.|++.--.|..-|.-|.|+...+++. +....++.+..
T Consensus 787 ~iv~~FN~~k~~~rVmLlSLtAGGVGLNL~GaNHlilvDlHWNPaLEqQAcDRIYR~GQkK~V~IhR~~~~gTvEqrV~~ 866 (901)
T KOG4439|consen 787 EIVDEFNQEKGGARVMLLSLTAGGVGLNLIGANHLILVDLHWNPALEQQACDRIYRMGQKKDVFIHRLMCKGTVEQRVKS 866 (901)
T ss_pred HHHHHHHhccCCceEEEEEEccCcceeeecccceEEEEecccCHHHHHHHHHHHHHhcccCceEEEEEEecCcHHHHHHH
Confidence 9999998533 34 466668889999999999999999999999999999999999998877654 44455677777
Q ss_pred HHHcCC
Q 010357 451 LEKHGV 456 (512)
Q Consensus 451 l~~~~~ 456 (512)
++....
T Consensus 867 LQdkKl 872 (901)
T KOG4439|consen 867 LQDKKL 872 (901)
T ss_pred HHHHHH
Confidence 776433
No 147
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=99.65 E-value=1.7e-14 Score=148.77 Aligned_cols=350 Identities=17% Similarity=0.092 Sum_probs=185.2
Q ss_pred CcHHHHHHHHHhhc----C--CC--EEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcHHHHHHHHHHH
Q 010357 42 PTKVQAQAIPVILS----G--RH--VLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEIL 113 (512)
Q Consensus 42 ~~~~Q~~~~~~~~~----~--~~--~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~ 113 (512)
-+.||-+|+..+.. . .. ++-.|.||+|||++=+-.|...-.. ..+.+..+..-.|.|..|..+.+
T Consensus 409 rF~WQdkA~d~a~~~r~~~~~~GfF~vNMASTGcGKT~aNARImyaLsd~-------~~g~RfsiALGLRTLTLQTGda~ 481 (1110)
T TIGR02562 409 RFRWQNKAFNLAQKLRQKSPEQGAFGVNMASTGCGKTLANARAMYALRDD-------KQGARFAIALGLRSLTLQTGHAL 481 (1110)
T ss_pred CcchHHHHHHHHHHHHhhcccCCeEEEEecCCCcchHHHHHHHHHHhCCC-------CCCceEEEEccccceeccchHHH
Confidence 47899999988763 1 12 3447889999999976655443222 34677888888888888888888
Q ss_pred HHHHhhcCCcceEEEeCCCchHHHH-------------------------------------------HHHcC-------
Q 010357 114 HKLLHRFHWIVPGYVMGGENRSKEK-------------------------------------------ARLRK------- 143 (512)
Q Consensus 114 ~~~~~~~~~~~~~~~~~g~~~~~~~-------------------------------------------~~~~~------- 143 (512)
++-+.- +.....+++|+.-..... ..+.+
T Consensus 482 r~rL~L-~~ddLAVlIGs~Av~~L~e~~~~~~~~~~~~GSeS~e~l~~e~~~~~~~~~~g~l~~~~l~~~l~~~~k~~rl 560 (1110)
T TIGR02562 482 KTRLNL-SDDDLAVLIGGTAVQTLFDLSKEKIEQVDEDGSESAPIFLAEGQDCNLPDWDGPLDTIELLGRLSLDDKEKTL 560 (1110)
T ss_pred HHhcCC-CccceEEEECHHHHHHHHHHHhhhccccccCCCccchhhhcccCcCCeeeccCCccchhhhhhhccChhhhhh
Confidence 776531 112222222221111111 01110
Q ss_pred -CCCEEEeCChHHHHHHhhcC--CCcCC----ceeEEEEcchhHHHhcCchHHHHHHHHHhccCCCCCCCCCCcccccce
Q 010357 144 -GISILVATPGRLLDHLKHTS--SFLHT----NLRWIIFDEADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKR 216 (512)
Q Consensus 144 -~~~Iiv~Tp~~l~~~l~~~~--~~~~~----~~~~lV~DEah~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 216 (512)
..+|+|+|++.++......+ ...+. .-+.|||||+|.+... ....+..++..+... ..
T Consensus 561 l~apv~V~TIDQlL~a~~~~r~~~~~l~ll~La~svlVlDEVHaYD~~-~~~~L~rlL~w~~~l--------------G~ 625 (1110)
T TIGR02562 561 LAAPVLVCTIDHLIPATESHRGGHHIAPMLRLMSSDLILDEPDDYEPE-DLPALLRLVQLAGLL--------------GS 625 (1110)
T ss_pred hcCCeEEecHHHHHHHhhhcccchhHHHHHHhcCCCEEEECCccCCHH-HHHHHHHHHHHHHHc--------------CC
Confidence 13699999999987763211 11110 1247999999975433 223344444433322 67
Q ss_pred eEEEEEEecchhhHHHHH-hhc----------C---CCeEEccCC-CcCCCCccccccCCcccchhhhccCCCccccccc
Q 010357 217 QNLLLSATLNEKVNHLAK-ISL----------E---TPVLIGLDE-KKLPEDKSHVRFGSLESDVKEEVEHPSTTMRSTT 281 (512)
Q Consensus 217 ~~i~~SAT~~~~~~~~~~-~~~----------~---~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (512)
++++||||+|+....... -+. + .+..+.+.. .+.. ....++.........+.........
T Consensus 626 ~VlLmSATLP~~l~~~L~~Ay~~G~~~~q~~~g~~~~~~~i~CaW~DE~~-----~~~~~~~~~~~F~~~H~~Fv~~R~~ 700 (1110)
T TIGR02562 626 RVLLSSATLPPALVKTLFRAYEAGRQMYQALYGQPKKPLNICCAWVDEPQ-----VWQADCNQKSEFIQRHQDFLRDRAV 700 (1110)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCCcceeEEeecccC-----chhhhhcCHHHHHHHHHHHHHHHHH
Confidence 899999999976543222 111 1 111111111 0000 0000000000000000000000000
Q ss_pred cccccccceeeeEEEecCC-----chHHHHHHHHH----hhhc------cccCc---eEEEEeecchhhhhHHHhhhhhc
Q 010357 282 EDFKLPAQLVQRYVKVPCG-----SRLAVLLSILK----HLFD------TEVSQ---KLVVFFSTCDAVDFHYSLLSEFQ 343 (512)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~-----~k~~~l~~~l~----~~~~------~~~~~---~~lvf~~~~~~~~~l~~~l~~~~ 343 (512)
.-...+..-.-....++.. .....+.+.+. .+.. ...+. =.+|-+++++.+..++..|.+..
T Consensus 701 ~L~~~p~~R~a~i~~~~~~~~~~~~~~~~~a~~i~~~~~~LH~~h~~~~~~sgk~VSfGliR~anI~p~V~~A~~L~~~~ 780 (1110)
T TIGR02562 701 QLAKKPVRRLAELLSLSSLPRENESTYLALAQSLLEGALRLHQAHAQTDPKSEKKVSVGLIRVANIDPLIRLAQFLYALL 780 (1110)
T ss_pred HHhcCcccceEEEeecCCcccchhHHHHHHHHHHHHHHHHHHHHhCccCCCCCeEEEEEEEEEcCchHHHHHHHHHHhhc
Confidence 0000000000111112211 12222333222 2211 11111 35777888888888888887764
Q ss_pred CCCCCCChhHHHhhhhccceeeecCCCCHHHHHHHHHhh---h-------------------c----CCCcEEEeecccc
Q 010357 344 WSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAF---K-------------------T----EKKALLLSTDVAA 397 (512)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~v~~l~g~~~~~~r~~~~~~f---~-------------------~----~~~~vLvaT~~~~ 397 (512)
...+ ..+.+.+||+..+...|..+++.. . + +...|+|+|++++
T Consensus 781 ~~~~-----------~~i~~~~yHSr~~l~~Rs~~E~~Ld~~L~R~~~~~~~~~~~i~~~l~~~~~~~~~~i~v~Tqv~E 849 (1110)
T TIGR02562 781 AEEK-----------YQIHLCCYHAQDPLLLRSYIERRLDQLLTRHKPEQLFQDDEIIDLMQNSPALNHLFIVLATPVEE 849 (1110)
T ss_pred cccC-----------CceeEEEecccChHHHHHHHHHHHHHHhcccChhhhhchHHHHHHHhcccccCCCeEEEEeeeEE
Confidence 3221 145688899999888887777653 1 1 3557999999999
Q ss_pred cCCCCCCCcEEEEeCCCCChhHHHHhhhhcccCCCC
Q 010357 398 RGLDFPKVKCIIQYDSAGEATEYVHRVGRTARLGER 433 (512)
Q Consensus 398 ~Gldip~~~~VI~~~~p~s~~~~~Q~~GRagR~g~~ 433 (512)
.|+|+ +.+.+|. -|.+..+.+|++||+.|.|..
T Consensus 850 ~g~D~-dfd~~~~--~~~~~~sliQ~aGR~~R~~~~ 882 (1110)
T TIGR02562 850 VGRDH-DYDWAIA--DPSSMRSIIQLAGRVNRHRLE 882 (1110)
T ss_pred EEecc-cCCeeee--ccCcHHHHHHHhhcccccccC
Confidence 99998 4666554 566799999999999998753
No 148
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=99.65 E-value=1.1e-15 Score=153.77 Aligned_cols=351 Identities=18% Similarity=0.243 Sum_probs=207.5
Q ss_pred CCcHHHHHHHHHhh---cC-CCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHH
Q 010357 41 APTKVQAQAIPVIL---SG-RHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKL 116 (512)
Q Consensus 41 ~~~~~Q~~~~~~~~---~~-~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 116 (512)
++.+||...+..+. ++ =|.++...||.|||......+...+..... .+.-+|+||+..|.+ |..+|..|
T Consensus 394 ~Lk~YQl~GLqWmVSLyNNnLNGILADEMGLGKTIQtIsLitYLmE~K~~------~GP~LvivPlstL~N-W~~Ef~kW 466 (1157)
T KOG0386|consen 394 ELKEYQLHGLQWMVSLYNNNLNGILADEMGLGKTIQTISLITYLMEHKQM------QGPFLIIVPLSTLVN-WSSEFPKW 466 (1157)
T ss_pred CCchhhhhhhHHHhhccCCCcccccchhcccchHHHHHHHHHHHHHHccc------CCCeEEeccccccCC-chhhcccc
Confidence 68999999986543 33 378999999999999987777766655221 334789999988877 56677777
Q ss_pred HhhcCCcceEEEeCCCchH--HHHH-HHcCCCCEEEeCChHHHHHHhhcCCCcCCceeEEEEcchhHHHhcCchHHHHHH
Q 010357 117 LHRFHWIVPGYVMGGENRS--KEKA-RLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEI 193 (512)
Q Consensus 117 ~~~~~~~~~~~~~~g~~~~--~~~~-~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lV~DEah~l~~~~~~~~~~~i 193 (512)
.. .+..+.+.|.... .... ....+.+|+++|++.+..--.-...+ ++.++||||.|+|.. ..+.+...
T Consensus 467 aP----Sv~~i~YkGtp~~R~~l~~qir~gKFnVLlTtyEyiikdk~lLsKI---~W~yMIIDEGHRmKN--a~~KLt~~ 537 (1157)
T KOG0386|consen 467 AP----SVQKIQYKGTPQQRSGLTKQQRHGKFNVLLTTYEYIIKDKALLSKI---SWKYMIIDEGHRMKN--AICKLTDT 537 (1157)
T ss_pred cc----ceeeeeeeCCHHHHhhHHHHHhcccceeeeeeHHHhcCCHHHHhcc---CCcceeecccccccc--hhhHHHHH
Confidence 54 2334444443221 1111 22345899999999886511111112 678999999999876 44555555
Q ss_pred HHHhccCCCCCCCCCCcccccceeEEEEEEecchhh------------------HHHHHhhcCCCeEEccCCCcCCCCc-
Q 010357 194 LDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKV------------------NHLAKISLETPVLIGLDEKKLPEDK- 254 (512)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~- 254 (512)
+..... ..+.+++|+|+..+- ...+..+++.|+.-.-....+...-
T Consensus 538 L~t~y~---------------~q~RLLLTGTPLQN~LpELWaLLNFlLP~IFnS~~~FeqWFN~PFantGek~eLteEEt 602 (1157)
T KOG0386|consen 538 LNTHYR---------------AQRRLLLTGTPLQNNLPELWALLNFLLPNIFNSCKAFEQWFNQPFANTGEKVELTEEET 602 (1157)
T ss_pred hhcccc---------------chhhhhhcCChhhhccHHHHHHHHHhccchhhhHhHHHHHhhhhhhhcCCcccccchHH
Confidence 542111 334466677763210 1111112222221111000000000
Q ss_pred -----------cccccC----CcccchhhhccCCCcccccc----------------------cccc-cccc------ce
Q 010357 255 -----------SHVRFG----SLESDVKEEVEHPSTTMRST----------------------TEDF-KLPA------QL 290 (512)
Q Consensus 255 -----------~~~~~~----~~~~~~~~~~~~~~~~~~~~----------------------~~~~-~~~~------~~ 290 (512)
.++... .++....+..+.......+. .... .+.. .+
T Consensus 603 lLIIrRLHkVLRPFlLRRlKkeVE~~LPdKve~viKC~mSalQq~lY~~m~~~g~l~~d~~~g~~g~k~L~N~imqLRKi 682 (1157)
T KOG0386|consen 603 LLIIRRLHKVLRPFLLRRLKKEVEQELPDKVEDVIKCDMSALQQSLYKQMQNKGQLLKDTAKGKKGYKPLFNTIMQLRKL 682 (1157)
T ss_pred HHHHHHHHHhhhHHHHHhhhHHHhhhCchhhhHhhheehhhhhHhhhHHHHhCCCCCcCchhccccchhhhhHhHHHHHh
Confidence 000000 00111111100000000000 0000 0000 00
Q ss_pred -eeeEEE----------------ecCCchHHHHHHHHHhhhccccCceEEEEeecchhhhhHHHhhhhhcCCCCCCChhH
Q 010357 291 -VQRYVK----------------VPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDME 353 (512)
Q Consensus 291 -~~~~~~----------------~~~~~k~~~l~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 353 (512)
.|-+.. +..+.|...+-.++-++ ...+++++.||.-......+..+|.-.
T Consensus 683 CNHP~lf~~ve~~~~~~~~~~dL~R~sGKfELLDRiLPKL--katgHRVLlF~qMTrlmdimEdyL~~~----------- 749 (1157)
T KOG0386|consen 683 CNHPYLFANVENSYTLHYDIKDLVRVSGKFELLDRILPKL--KATGHRVLLFSQMTRLMDILEDYLQIR----------- 749 (1157)
T ss_pred cCCchhhhhhccccccccChhHHHHhccHHHHHHhhhHHH--HhcCcchhhHHHHHHHHHHHHHHHhhh-----------
Confidence 000000 11133433333333333 345789999999888888888888665
Q ss_pred HHhhhhccceeeecCCCCHHHHHHHHHhhhcCCCc---EEEeecccccCCCCCCCcEEEEeCCCCChhHHHHhhhhcccC
Q 010357 354 LKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKA---LLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRVGRTARL 430 (512)
Q Consensus 354 ~~~~~~~~~v~~l~g~~~~~~r~~~~~~f~~~~~~---vLvaT~~~~~Gldip~~~~VI~~~~p~s~~~~~Q~~GRagR~ 430 (512)
+++-..+.|.....+|...++.|...... .|.+|.+.+.|+|+.-++.||.||..|++....|+.-||.|.
T Consensus 750 ------~~kYlRLDG~TK~~eRg~ll~~FN~Pds~yf~FllstragglglNlQtadtviifdsdwnp~~d~qaqdrahri 823 (1157)
T KOG0386|consen 750 ------EYKYLRLDGQTKVEERGDLLEIFNAPDSPYFIFLLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRI 823 (1157)
T ss_pred ------hhheeeecCCcchhhHHHHHHHhcCCCCceeeeeeeecccccccchhhcceEEEecCCCCchhHHHHHHHHHHh
Confidence 77888899999999999999999987654 588999999999999999999999999999999999999999
Q ss_pred CCCccEEEecC
Q 010357 431 GERGDSLLFLQ 441 (512)
Q Consensus 431 g~~g~~~~~~~ 441 (512)
|+...+-++..
T Consensus 824 gq~~evRv~rl 834 (1157)
T KOG0386|consen 824 GQKKEVRVLRL 834 (1157)
T ss_pred hchhheeeeee
Confidence 98876665543
No 149
>PRK14873 primosome assembly protein PriA; Provisional
Probab=99.64 E-value=2.3e-14 Score=146.31 Aligned_cols=313 Identities=12% Similarity=0.046 Sum_probs=177.5
Q ss_pred EEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHHhhcCCcceEEEeCCCchHHH--
Q 010357 60 LVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKE-- 137 (512)
Q Consensus 60 lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-- 137 (512)
+..+.+|||||.+|+-.+...+.. |..+|+++|...|+.|+.+.|+..+. ...+..++.+......
T Consensus 164 i~~~~~GSGKTevyl~~i~~~l~~---------Gk~vLvLvPEi~lt~q~~~rl~~~f~---~~~v~~lhS~l~~~~R~~ 231 (665)
T PRK14873 164 VWQALPGEDWARRLAAAAAATLRA---------GRGALVVVPDQRDVDRLEAALRALLG---AGDVAVLSAGLGPADRYR 231 (665)
T ss_pred HhhcCCCCcHHHHHHHHHHHHHHc---------CCeEEEEecchhhHHHHHHHHHHHcC---CCcEEEECCCCCHHHHHH
Confidence 344446999999999999988876 88899999999999999999998753 1234455555544433
Q ss_pred --HHHHcCCCCEEEeCChHHHHHHhhcCCCcCCceeEEEEcchhHHHhc---CchHHHHHHHHHhccCCCCCCCCCCccc
Q 010357 138 --KARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILEL---GFGKEIEEILDILGSRNIGSIGEGNEVS 212 (512)
Q Consensus 138 --~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lV~DEah~l~~~---~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 212 (512)
.....+..+|+|+|-..++ ..+.++++||+||-|.-.-. ....+.+.+........
T Consensus 232 ~w~~~~~G~~~IViGtRSAvF--------aP~~~LgLIIvdEEhd~sykq~~~p~yhaRdvA~~Ra~~~----------- 292 (665)
T PRK14873 232 RWLAVLRGQARVVVGTRSAVF--------APVEDLGLVAIWDDGDDLLAEPRAPYPHAREVALLRAHQH----------- 292 (665)
T ss_pred HHHHHhCCCCcEEEEcceeEE--------eccCCCCEEEEEcCCchhhcCCCCCCccHHHHHHHHHHHc-----------
Confidence 2333445899999954332 24558899999999964322 12222222222211111
Q ss_pred ccceeEEEEEEecchhhHHHHHhhcCCCeEEccCCCcCCCCccccccCCcccchhhhccCCCccccccccccccccceee
Q 010357 213 NVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLPEDKSHVRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQ 292 (512)
Q Consensus 213 ~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (512)
...+|+.|||++-........ +....+...........+.+...+.... ....
T Consensus 293 --~~~lvLgSaTPSles~~~~~~--g~~~~~~~~~~~~~~~~P~v~~vd~~~~-----------------------~~~~ 345 (665)
T PRK14873 293 --GCALLIGGHARTAEAQALVES--GWAHDLVAPRPVVRARAPRVRALGDSGL-----------------------ALER 345 (665)
T ss_pred --CCcEEEECCCCCHHHHHHHhc--CcceeeccccccccCCCCeEEEEeCchh-----------------------hhcc
Confidence 778999999987543322221 1111111111110101111111100000 0000
Q ss_pred eEEEecCC-chHHHHHHHHHhhhccccCceEEEEeecchhhhhHHHhhhhhcCCCC------------------------
Q 010357 293 RYVKVPCG-SRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPH------------------------ 347 (512)
Q Consensus 293 ~~~~~~~~-~k~~~l~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~------------------------ 347 (512)
. ..... .-...+.+.+++.++ .+ ++|+|.|.+-.+..+...=......|.
T Consensus 346 ~--~~~~g~~ls~~l~~~i~~~L~--~g-qvll~lnRrGyap~l~C~~Cg~~~~C~~C~~~L~~h~~~~~l~Ch~CG~~~ 420 (665)
T PRK14873 346 D--PAARAARLPSLAFRAARDALE--HG-PVLVQVPRRGYVPSLACARCRTPARCRHCTGPLGLPSAGGTPRCRWCGRAA 420 (665)
T ss_pred c--cccccCccCHHHHHHHHHHHh--cC-cEEEEecCCCCCCeeEhhhCcCeeECCCCCCceeEecCCCeeECCCCcCCC
Confidence 0 00000 011345555555542 34 999999988866654332211111100
Q ss_pred --------------------CCChhHHHhhhhccceeeecCCCCHHHHHHHHHhhhcCCCcEEEeecccccCCCCCCCcE
Q 010357 348 --------------------SQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKC 407 (512)
Q Consensus 348 --------------------~~~~~~~~~~~~~~~v~~l~g~~~~~~r~~~~~~f~~~~~~vLvaT~~~~~Gldip~~~~ 407 (512)
+..++.+...||+.++..+.++ .+++.|. ++.+|||+|+.++.=+. +++++
T Consensus 421 ~p~~Cp~Cgs~~l~~~g~Gter~eeeL~~~FP~~~V~r~d~d-------~~l~~~~-~~~~IlVGTqgaepm~~-g~~~l 491 (665)
T PRK14873 421 PDWRCPRCGSDRLRAVVVGARRTAEELGRAFPGVPVVTSGGD-------QVVDTVD-AGPALVVATPGAEPRVE-GGYGA 491 (665)
T ss_pred cCccCCCCcCCcceeeeccHHHHHHHHHHHCCCCCEEEEChH-------HHHHhhc-cCCCEEEECCCCccccc-CCceE
Confidence 1116667778888888875543 4788897 58999999993221111 35677
Q ss_pred EEEeCCCC------------ChhHHHHhhhhcccCCCCccEEEecCccc
Q 010357 408 IIQYDSAG------------EATEYVHRVGRTARLGERGDSLLFLQPVE 444 (512)
Q Consensus 408 VI~~~~p~------------s~~~~~Q~~GRagR~g~~g~~~~~~~~~~ 444 (512)
|+..|... ....+.|.+||+||..++|.+++...++.
T Consensus 492 V~ildaD~~L~~pDfRA~Er~~qll~qvagragr~~~~G~V~iq~~p~~ 540 (665)
T PRK14873 492 ALLLDAWALLGRQDLRAAEDTLRRWMAAAALVRPRADGGQVVVVAESSL 540 (665)
T ss_pred EEEEcchhhhcCCCcChHHHHHHHHHHHHHhhcCCCCCCEEEEEeCCCC
Confidence 76555321 23345789999999989999988765443
No 150
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=99.62 E-value=4.5e-13 Score=139.48 Aligned_cols=119 Identities=19% Similarity=0.277 Sum_probs=83.8
Q ss_pred hHHHHHHHHHhhhccccCceEEEEeecchhhhhHHHhhhhhcCCCCCCChhHHHhhhhccceeeecCCCCHHHHHHHHHh
Q 010357 302 RLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGA 381 (512)
Q Consensus 302 k~~~l~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~l~g~~~~~~r~~~~~~ 381 (512)
....+.+.+..+.. . ++.++||++|.+..+.++..+.... +..+.. +|. ..|..+++.
T Consensus 519 ~~~~~~~~i~~l~~-~-~gg~LVlFtSy~~l~~v~~~l~~~~----------------~~~ll~-Q~~---~~~~~ll~~ 576 (697)
T PRK11747 519 HTAEMAEFLPELLE-K-HKGSLVLFASRRQMQKVADLLPRDL----------------RLMLLV-QGD---QPRQRLLEK 576 (697)
T ss_pred HHHHHHHHHHHHHh-c-CCCEEEEeCcHHHHHHHHHHHHHhc----------------CCcEEE-eCC---chHHHHHHH
Confidence 34566777777665 3 4568999999999999999886531 333333 554 246778877
Q ss_pred hhc----CCCcEEEeecccccCCCCCC--CcEEEEeCCCCC-h-----------------------------hHHHHhhh
Q 010357 382 FKT----EKKALLLSTDVAARGLDFPK--VKCIIQYDSAGE-A-----------------------------TEYVHRVG 425 (512)
Q Consensus 382 f~~----~~~~vLvaT~~~~~Gldip~--~~~VI~~~~p~s-~-----------------------------~~~~Q~~G 425 (512)
|++ ++..||++|..+.+|||+|+ +++||....|.. + ..+.|.+|
T Consensus 577 f~~~~~~~~~~VL~g~~sf~EGVD~pGd~l~~vII~kLPF~~p~dp~~~ar~~~~~~~g~~~F~~~~lP~A~~kl~Qg~G 656 (697)
T PRK11747 577 HKKRVDEGEGSVLFGLQSFAEGLDLPGDYLTQVIITKIPFAVPDSPVEATLAEWLKSRGGNPFMEISVPDASFKLIQAVG 656 (697)
T ss_pred HHHHhccCCCeEEEEeccccccccCCCCceEEEEEEcCCCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhc
Confidence 764 67789999999999999997 788998886631 1 13368889
Q ss_pred hcccCCCCccEEEecCc
Q 010357 426 RTARLGERGDSLLFLQP 442 (512)
Q Consensus 426 RagR~g~~g~~~~~~~~ 442 (512)
|.-|.....-+++++++
T Consensus 657 RlIRs~~D~G~i~ilD~ 673 (697)
T PRK11747 657 RLIRSEQDRGRVTILDR 673 (697)
T ss_pred cccccCCceEEEEEEcc
Confidence 99998654334555554
No 151
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.62 E-value=1.8e-15 Score=113.46 Aligned_cols=72 Identities=42% Similarity=0.713 Sum_probs=69.9
Q ss_pred ccceeeecCCCCHHHHHHHHHhhhcCCCcEEEeecccccCCCCCCCcEEEEeCCCCChhHHHHhhhhcccCC
Q 010357 360 RCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRVGRTARLG 431 (512)
Q Consensus 360 ~~~v~~l~g~~~~~~r~~~~~~f~~~~~~vLvaT~~~~~Gldip~~~~VI~~~~p~s~~~~~Q~~GRagR~g 431 (512)
++.+..+||+++..+|..+++.|.++...+|++|+++++|+|+|++++||.+++|++...|.|++||++|.|
T Consensus 11 ~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gi~~~~~~~vi~~~~~~~~~~~~Q~~gR~~R~g 82 (82)
T smart00490 11 GIKVARLHGGLSQEEREEILEKFNNGKIKVLVATDVAERGLDLPGVDLVIIYDLPWSPASYIQRIGRAGRAG 82 (82)
T ss_pred CCeEEEEECCCCHHHHHHHHHHHHcCCCeEEEECChhhCCcChhcCCEEEEeCCCCCHHHHHHhhcccccCC
Confidence 778999999999999999999999999999999999999999999999999999999999999999999975
No 152
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=99.60 E-value=7.2e-14 Score=130.39 Aligned_cols=142 Identities=17% Similarity=0.199 Sum_probs=118.4
Q ss_pred ecCCchHHHHHHHHHhhhccccCceEEEEeecchhhhhHHHhhhhhcCCCCCCChhHHHhhhhccceeeecCCCCHHHHH
Q 010357 297 VPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRR 376 (512)
Q Consensus 297 ~~~~~k~~~l~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~l~g~~~~~~r~ 376 (512)
...+.|..+|.+.+..+..+...-+.|||.........+.-.|... |+.++.+.|+|++..|.
T Consensus 616 ~qsSTKIEAL~EEl~~l~~rd~t~KsIVFSQFTSmLDLi~~rL~ka-----------------GfscVkL~GsMs~~ard 678 (791)
T KOG1002|consen 616 WQSSTKIEALVEELYFLRERDRTAKSIVFSQFTSMLDLIEWRLGKA-----------------GFSCVKLVGSMSPAARD 678 (791)
T ss_pred hcchhHHHHHHHHHHHHHHcccchhhhhHHHHHHHHHHHHHHhhcc-----------------CceEEEeccCCChHHHH
Confidence 4567899999999988877777779999999999988888888887 88999999999999999
Q ss_pred HHHHhhhcCC-CcE-EEeecccccCCCCCCCcEEEEeCCCCChhHHHHhhhhcccCCCC--ccEEEecCc-cchhHHHHH
Q 010357 377 TTFGAFKTEK-KAL-LLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRVGRTARLGER--GDSLLFLQP-VEMDYLQDL 451 (512)
Q Consensus 377 ~~~~~f~~~~-~~v-LvaT~~~~~Gldip~~~~VI~~~~p~s~~~~~Q~~GRagR~g~~--g~~~~~~~~-~~~~~~~~l 451 (512)
..++.|+++. ++| |++-.+.+.-+|+..+++|+++|+=|++..-.|..-|..|.|+. -.++.|+-. .-++.+-.|
T Consensus 679 atik~F~nd~~c~vfLvSLkAGGVALNLteASqVFmmDPWWNpaVe~Qa~DRiHRIGQ~rPvkvvrf~iEnsiE~kIieL 758 (791)
T KOG1002|consen 679 ATIKYFKNDIDCRVFLVSLKAGGVALNLTEASQVFMMDPWWNPAVEWQAQDRIHRIGQYRPVKVVRFCIENSIEEKIIEL 758 (791)
T ss_pred HHHHHhccCCCeEEEEEEeccCceEeeechhceeEeecccccHHHHhhhhhhHHhhcCccceeEEEeehhccHHHHHHHH
Confidence 9999999863 444 77778899999999999999999999999999999999999874 355656554 335566667
Q ss_pred HHcC
Q 010357 452 EKHG 455 (512)
Q Consensus 452 ~~~~ 455 (512)
+++.
T Consensus 759 QeKK 762 (791)
T KOG1002|consen 759 QEKK 762 (791)
T ss_pred HHHH
Confidence 6643
No 153
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=99.60 E-value=3e-14 Score=138.16 Aligned_cols=122 Identities=25% Similarity=0.397 Sum_probs=107.0
Q ss_pred CCchHHHHHHHHHhhhccccCceEEEEeecchhhhhHHHhhhhhcCCCCCCChhHHHhhhhccceeeecCCCCHHHHHHH
Q 010357 299 CGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTT 378 (512)
Q Consensus 299 ~~~k~~~l~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~l~g~~~~~~r~~~ 378 (512)
.+.|+..+-.++.++ ...+.++|+|..-.+....+-++|... ++....+.|+....+|..+
T Consensus 1026 dSgKL~~LDeLL~kL--kaegHRvL~yfQMTkM~dl~EdYl~yr-----------------~Y~ylRLDGSsk~~dRrd~ 1086 (1185)
T KOG0388|consen 1026 DSGKLVVLDELLPKL--KAEGHRVLMYFQMTKMIDLIEDYLVYR-----------------GYTYLRLDGSSKASDRRDV 1086 (1185)
T ss_pred cccceeeHHHHHHHh--hcCCceEEehhHHHHHHHHHHHHHHhh-----------------ccceEEecCcchhhHHHHH
Confidence 467777777777776 567899999999999999999998877 8888999999999999999
Q ss_pred HHhhhcCCCc-EEEeecccccCCCCCCCcEEEEeCCCCChhHHHHhhhhcccCCCCccEEEe
Q 010357 379 FGAFKTEKKA-LLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRVGRTARLGERGDSLLF 439 (512)
Q Consensus 379 ~~~f~~~~~~-vLvaT~~~~~Gldip~~~~VI~~~~p~s~~~~~Q~~GRagR~g~~g~~~~~ 439 (512)
.+.|...++- .|++|.+.+.|||+..++.||.|+..|++..-.|.+-||.|.|+...+.++
T Consensus 1087 vrDwQ~sdiFvFLLSTRAGGLGINLTAADTViFYdSDWNPT~D~QAMDRAHRLGQTrdvtvy 1148 (1185)
T KOG0388|consen 1087 VRDWQASDIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTADQQAMDRAHRLGQTRDVTVY 1148 (1185)
T ss_pred HhhccCCceEEEEEecccCcccccccccceEEEecCCCCcchhhHHHHHHHhccCccceeee
Confidence 9999987655 488999999999999999999999999999999999999999987654433
No 154
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=99.60 E-value=4.1e-13 Score=141.09 Aligned_cols=120 Identities=18% Similarity=0.278 Sum_probs=83.7
Q ss_pred hHHHHHHHHHhhhccccCceEEEEeecchhhhhHHHhhhhhcCCCCCCChhHHHhhhhccceeeecCCCCHHHHHHHHHh
Q 010357 302 RLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGA 381 (512)
Q Consensus 302 k~~~l~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~l~g~~~~~~r~~~~~~ 381 (512)
-...+...+..+.... +++++||++|.+.++.+++.+..... . -....+|.. .+..+++.
T Consensus 463 ~~~~~~~~i~~~~~~~-~~~~lvlF~Sy~~l~~~~~~~~~~~~---------------~-~~v~~q~~~---~~~~~l~~ 522 (654)
T COG1199 463 LLAKLAAYLREILKAS-PGGVLVLFPSYEYLKRVAERLKDERS---------------T-LPVLTQGED---EREELLEK 522 (654)
T ss_pred HHHHHHHHHHHHHhhc-CCCEEEEeccHHHHHHHHHHHhhcCc---------------c-ceeeecCCC---cHHHHHHH
Confidence 4455566666655444 45999999999999999999987521 0 122334443 34478888
Q ss_pred hhcCCC-cEEEeecccccCCCCCC--CcEEEEeCCCC------------------------------ChhHHHHhhhhcc
Q 010357 382 FKTEKK-ALLLSTDVAARGLDFPK--VKCIIQYDSAG------------------------------EATEYVHRVGRTA 428 (512)
Q Consensus 382 f~~~~~-~vLvaT~~~~~Gldip~--~~~VI~~~~p~------------------------------s~~~~~Q~~GRag 428 (512)
|+++.- .++|+|..+++|||+|+ +..||..+.|. -...+.|.+||+-
T Consensus 523 f~~~~~~~~lv~~gsf~EGVD~~g~~l~~vvI~~lPfp~p~dp~~~~r~~~~~~~g~~~f~~~~l~~A~~~l~QavGRlI 602 (654)
T COG1199 523 FKASGEGLILVGGGSFWEGVDFPGDALRLVVIVGLPFPNPDDPLLKARLEFLKRLGGDPFEEFYLPPAVIKLRQAVGRLI 602 (654)
T ss_pred HHHhcCCeEEEeeccccCcccCCCCCeeEEEEEecCCCCCCCHHHHHHHHHHHHhcCCCceEeehHHHHHHHHHhhcccc
Confidence 887655 89999999999999996 57788877664 2335589999999
Q ss_pred cCCCCccEEEecC
Q 010357 429 RLGERGDSLLFLQ 441 (512)
Q Consensus 429 R~g~~g~~~~~~~ 441 (512)
|.-...-++++++
T Consensus 603 R~~~D~G~ivllD 615 (654)
T COG1199 603 RSEDDRGVIVLLD 615 (654)
T ss_pred ccCCCceEEEEec
Confidence 9754433344444
No 155
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=99.59 E-value=1e-13 Score=142.40 Aligned_cols=125 Identities=16% Similarity=0.217 Sum_probs=101.3
Q ss_pred CCchHHHHHHHHHhhhccccCceEEEEeecchhhhhHHHhhhhhcCCCCCCChhHHHhhhhccceeeecCCCCHHHHHHH
Q 010357 299 CGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTT 378 (512)
Q Consensus 299 ~~~k~~~l~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~l~g~~~~~~r~~~ 378 (512)
..+|+.++++.+.... ..+.|+||-+.|++..+.++++|... +++.-.+++.....+-+.+
T Consensus 610 ~~eK~~Aii~ei~~~~--~~GrPVLVGT~SVe~SE~lS~~L~~~-----------------gI~H~VLNAK~h~~EAeIV 670 (1112)
T PRK12901 610 KREKYNAVIEEITELS--EAGRPVLVGTTSVEISELLSRMLKMR-----------------KIPHNVLNAKLHQKEAEIV 670 (1112)
T ss_pred HHHHHHHHHHHHHHHH--HCCCCEEEEeCcHHHHHHHHHHHHHc-----------------CCcHHHhhccchhhHHHHH
Confidence 3578888888888774 56789999999999999999999987 6666666666444444444
Q ss_pred HHhhhcCCCcEEEeecccccCCCCC--------CCcEEEEeCCCCChhHHHHhhhhcccCCCCccEEEecCccc
Q 010357 379 FGAFKTEKKALLLSTDVAARGLDFP--------KVKCIIQYDSAGEATEYVHRVGRTARLGERGDSLLFLQPVE 444 (512)
Q Consensus 379 ~~~f~~~~~~vLvaT~~~~~Gldip--------~~~~VI~~~~p~s~~~~~Q~~GRagR~g~~g~~~~~~~~~~ 444 (512)
.+.=+.| .|-|||+++++|.|+- +-=+||-...+.|..--.|..||+||.|.+|.+..|++-+|
T Consensus 671 A~AG~~G--aVTIATNMAGRGTDIkLg~~V~e~GGL~VIgTerheSrRID~QLrGRaGRQGDPGsS~f~lSLED 742 (1112)
T PRK12901 671 AEAGQPG--TVTIATNMAGRGTDIKLSPEVKAAGGLAIIGTERHESRRVDRQLRGRAGRQGDPGSSQFYVSLED 742 (1112)
T ss_pred HhcCCCC--cEEEeccCcCCCcCcccchhhHHcCCCEEEEccCCCcHHHHHHHhcccccCCCCCcceEEEEccc
Confidence 4433333 7999999999999995 23478889999999999999999999999999999998776
No 156
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.59 E-value=7.4e-13 Score=139.13 Aligned_cols=76 Identities=22% Similarity=0.212 Sum_probs=62.6
Q ss_pred hcCCCCCcHHHHHHHHHh----hcCCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcHHHHHHHHH
Q 010357 36 RLGFEAPTKVQAQAIPVI----LSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYE 111 (512)
Q Consensus 36 ~~~~~~~~~~Q~~~~~~~----~~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~ 111 (512)
.|+|..++|.|.+....+ .++.++++.+|||+|||++.+.+++....... ...+++|++.|..-..|..+
T Consensus 5 ~FPy~~~y~~Q~~~m~~v~~~l~~~~~~llEsPTGtGKTlslL~~aL~~~~~~~------~~~kIiy~sRThsQl~q~i~ 78 (705)
T TIGR00604 5 YFPYEKIYPEQRSYMRDLKRSLDRGDEAILEMPSGTGKTISLLSLILAYQQEKP------EVRKIIYASRTHSQLEQATE 78 (705)
T ss_pred ecCCCCCCHHHHHHHHHHHHHhccCCceEEeCCCCCCccHHHHHHHHHHHHhcc------ccccEEEEcccchHHHHHHH
Confidence 368887799999977654 46889999999999999999999998765421 23679999999999999999
Q ss_pred HHHHHH
Q 010357 112 ILHKLL 117 (512)
Q Consensus 112 ~~~~~~ 117 (512)
+++...
T Consensus 79 Elk~~~ 84 (705)
T TIGR00604 79 ELRKLM 84 (705)
T ss_pred HHHhhh
Confidence 998853
No 157
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=99.52 E-value=2.3e-12 Score=131.38 Aligned_cols=121 Identities=21% Similarity=0.376 Sum_probs=103.8
Q ss_pred CchHHHHHHHHHhhhccccCceEEEEeecchhhhhHHHhhhhhcCCCCCCChhHHHhhhhccceeeecCCCCHHHHHHHH
Q 010357 300 GSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTF 379 (512)
Q Consensus 300 ~~k~~~l~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~l~g~~~~~~r~~~~ 379 (512)
+.|+..|.-+|.++ ...++++|||+.-.+....+-.+|.-+ |+-.+.+.|....++|...+
T Consensus 1259 cGKLQtLAiLLqQL--k~eghRvLIfTQMtkmLDVLeqFLnyH-----------------gylY~RLDg~t~vEqRQaLm 1319 (1958)
T KOG0391|consen 1259 CGKLQTLAILLQQL--KSEGHRVLIFTQMTKMLDVLEQFLNYH-----------------GYLYVRLDGNTSVEQRQALM 1319 (1958)
T ss_pred cchHHHHHHHHHHH--HhcCceEEehhHHHHHHHHHHHHHhhc-----------------ceEEEEecCCccHHHHHHHH
Confidence 45677777777666 456789999999988888888888776 77888899999999999999
Q ss_pred HhhhcCC--CcEEEeecccccCCCCCCCcEEEEeCCCCChhHHHHhhhhcccCCCCccEEEe
Q 010357 380 GAFKTEK--KALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRVGRTARLGERGDSLLF 439 (512)
Q Consensus 380 ~~f~~~~--~~vLvaT~~~~~Gldip~~~~VI~~~~p~s~~~~~Q~~GRagR~g~~g~~~~~ 439 (512)
++|+.+. ...|++|-..+.|||+.+++.||.||..||+.--.|..-|+.|.|+...+.+|
T Consensus 1320 erFNaD~RIfcfILSTrSggvGiNLtgADTVvFYDsDwNPtMDaQAQDrChRIGqtRDVHIY 1381 (1958)
T KOG0391|consen 1320 ERFNADRRIFCFILSTRSGGVGINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHIY 1381 (1958)
T ss_pred HHhcCCCceEEEEEeccCCccccccccCceEEEecCCCCchhhhHHHHHHHhhcCccceEEE
Confidence 9999875 34688899999999999999999999999999999999999999987766555
No 158
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=99.50 E-value=2e-12 Score=130.25 Aligned_cols=321 Identities=17% Similarity=0.207 Sum_probs=184.3
Q ss_pred CEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHHhhcCCcceEEEeCCCchHHH
Q 010357 58 HVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKE 137 (512)
Q Consensus 58 ~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 137 (512)
-.+|.+|+|||||.+..-++.+.+.. +..++++++..++|+.+....++...-. + .+.+...+.. .
T Consensus 51 V~vVRSpMGTGKTtaLi~wLk~~l~~--------~~~~VLvVShRrSL~~sL~~rf~~~~l~-g--Fv~Y~d~~~~---~ 116 (824)
T PF02399_consen 51 VLVVRSPMGTGKTTALIRWLKDALKN--------PDKSVLVVSHRRSLTKSLAERFKKAGLS-G--FVNYLDSDDY---I 116 (824)
T ss_pred eEEEECCCCCCcHHHHHHHHHHhccC--------CCCeEEEEEhHHHHHHHHHHHHhhcCCC-c--ceeeeccccc---c
Confidence 35889999999998887777665433 3677999999999999999988765210 1 1111111100 0
Q ss_pred HHHHcCCCCEEEeCChHHHHHHhhcCCCcCCceeEEEEcchhHHHhcCchH------HHHHHHH-HhccCCCCCCCCCCc
Q 010357 138 KARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGK------EIEEILD-ILGSRNIGSIGEGNE 210 (512)
Q Consensus 138 ~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lV~DEah~l~~~~~~~------~~~~i~~-~~~~~~~~~~~~~~~ 210 (512)
. -....+-+++..++|.+... ..+.++++||+||+-.++..-+.. .+..++. .+..
T Consensus 117 i--~~~~~~rLivqIdSL~R~~~----~~l~~yDvVIIDEv~svL~qL~S~Tm~~~~~v~~~L~~lI~~----------- 179 (824)
T PF02399_consen 117 I--DGRPYDRLIVQIDSLHRLDG----SLLDRYDVVIIDEVMSVLNQLFSPTMRQREEVDNLLKELIRN----------- 179 (824)
T ss_pred c--cccccCeEEEEehhhhhccc----ccccccCEEEEehHHHHHHHHhHHHHhhHHHHHHHHHHHHHh-----------
Confidence 0 01235678888888877532 234478999999999876653322 1222222 2222
Q ss_pred ccccceeEEEEEEecchhhHHHHHhhcCCCeEEccCCCcCCCCc---cccccCCcccchhhhccCCCccccccccc-ccc
Q 010357 211 VSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLPEDK---SHVRFGSLESDVKEEVEHPSTTMRSTTED-FKL 286 (512)
Q Consensus 211 ~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 286 (512)
..++|++-|++++..-.+.+.......+..+......... .-.....++.+.......+.......... ...
T Consensus 180 ----ak~VI~~DA~ln~~tvdFl~~~Rp~~~i~vI~n~y~~~~fs~R~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~ 255 (824)
T PF02399_consen 180 ----AKTVIVMDADLNDQTVDFLASCRPDENIHVIVNTYASPGFSNRRCTFLRSLGTDTLAAALNPEDENADTSPTPKHS 255 (824)
T ss_pred ----CCeEEEecCCCCHHHHHHHHHhCCCCcEEEEEeeeecCCcccceEEEecccCcHHHHHHhCCcccccccCCCcCCC
Confidence 6789999999999888888876544433333332222111 11122223322222222211111111000 000
Q ss_pred ccceeeeEEEecCCchHHHHHHHHHhhhccccCceEEEEeecchhhhhHHHhhhhhcCCCCCCChhHHHhhhhccceeee
Q 010357 287 PAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRL 366 (512)
Q Consensus 287 ~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~l 366 (512)
+..............-...|...| ..+.++-||++|...++.+++..... ..++..+
T Consensus 256 ~~~~~~~~~~~~~~tF~~~L~~~L------~~gknIcvfsSt~~~~~~v~~~~~~~-----------------~~~Vl~l 312 (824)
T PF02399_consen 256 PDPTATAAISNDETTFFSELLARL------NAGKNICVFSSTVSFAEIVARFCARF-----------------TKKVLVL 312 (824)
T ss_pred CccccccccccchhhHHHHHHHHH------hCCCcEEEEeChHHHHHHHHHHHHhc-----------------CCeEEEE
Confidence 111111111111112222333322 34678889999999999999998877 6678888
Q ss_pred cCCCCHHHHHHHHHhhhcCCCcEEEeecccccCCCCCCCc--EEEEeCCC----CChhHHHHhhhhcccCCCCccEEEec
Q 010357 367 HGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVK--CIIQYDSA----GEATEYVHRVGRTARLGERGDSLLFL 440 (512)
Q Consensus 367 ~g~~~~~~r~~~~~~f~~~~~~vLvaT~~~~~Gldip~~~--~VI~~~~p----~s~~~~~Q~~GRagR~g~~g~~~~~~ 440 (512)
+|.-+.. .+. .+ ++.+|++-|+++..|+++.... -|.-|=.| .+..+..|++||+-.. .....++++
T Consensus 313 ~s~~~~~---dv~-~W--~~~~VviYT~~itvG~Sf~~~HF~~~f~yvk~~~~gpd~~s~~Q~lgRvR~l-~~~ei~v~~ 385 (824)
T PF02399_consen 313 NSTDKLE---DVE-SW--KKYDVVIYTPVITVGLSFEEKHFDSMFAYVKPMSYGPDMVSVYQMLGRVRSL-LDNEIYVYI 385 (824)
T ss_pred cCCCCcc---ccc-cc--cceeEEEEeceEEEEeccchhhceEEEEEecCCCCCCcHHHHHHHHHHHHhh-ccCeEEEEE
Confidence 8765544 232 22 4579999999999999986433 23333222 2455689999999555 456667776
Q ss_pred Ccc
Q 010357 441 QPV 443 (512)
Q Consensus 441 ~~~ 443 (512)
+..
T Consensus 386 d~~ 388 (824)
T PF02399_consen 386 DAS 388 (824)
T ss_pred ecc
Confidence 654
No 159
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=99.48 E-value=1.4e-12 Score=142.90 Aligned_cols=120 Identities=22% Similarity=0.397 Sum_probs=102.4
Q ss_pred chHHHHHHHH-HhhhccccCc--eEEEEeecchhhhhHHHhhhhhcCCCCCCChhHHHhhhhccceeeecCCCCHHHHHH
Q 010357 301 SRLAVLLSIL-KHLFDTEVSQ--KLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRT 377 (512)
Q Consensus 301 ~k~~~l~~~l-~~~~~~~~~~--~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~l~g~~~~~~r~~ 377 (512)
.|...+.+++ .... ..+. ++++|+........+...+... +.....++|+++...|..
T Consensus 692 ~k~~~l~~ll~~~~~--~~~~~~kvlifsq~t~~l~il~~~l~~~-----------------~~~~~~ldG~~~~~~r~~ 752 (866)
T COG0553 692 GKLQALDELLLDKLL--EEGHYHKVLIFSQFTPVLDLLEDYLKAL-----------------GIKYVRLDGSTPAKRRQE 752 (866)
T ss_pred hHHHHHHHHHHHHHH--hhcccccEEEEeCcHHHHHHHHHHHHhc-----------------CCcEEEEeCCCChhhHHH
Confidence 5667777777 4443 3345 9999999999999999999887 567899999999999999
Q ss_pred HHHhhhcC--CCcEEEeecccccCCCCCCCcEEEEeCCCCChhHHHHhhhhcccCCCCccEEEe
Q 010357 378 TFGAFKTE--KKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRVGRTARLGERGDSLLF 439 (512)
Q Consensus 378 ~~~~f~~~--~~~vLvaT~~~~~Gldip~~~~VI~~~~p~s~~~~~Q~~GRagR~g~~g~~~~~ 439 (512)
.++.|.++ ..-.++++.+++.|+|+..+++||++|+.+++....|+..|+.|.|+...+.++
T Consensus 753 ~i~~f~~~~~~~v~lls~kagg~glnLt~a~~vi~~d~~wnp~~~~Qa~dRa~RigQ~~~v~v~ 816 (866)
T COG0553 753 LIDRFNADEEEKVFLLSLKAGGLGLNLTGADTVILFDPWWNPAVELQAIDRAHRIGQKRPVKVY 816 (866)
T ss_pred HHHHhhcCCCCceEEEEecccccceeecccceEEEeccccChHHHHHHHHHHHHhcCcceeEEE
Confidence 99999996 344677788999999999999999999999999999999999999998765544
No 160
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.48 E-value=2.6e-12 Score=137.26 Aligned_cols=341 Identities=18% Similarity=0.142 Sum_probs=178.8
Q ss_pred CCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHHhhcCCcceEEEeCCCchHH
Q 010357 57 RHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSK 136 (512)
Q Consensus 57 ~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 136 (512)
+..+++-.||||||++.+..+-..+.. ...++++||+-.+.|-.|..+.+..+...... .. ...+...
T Consensus 274 ~~G~IWHtqGSGKTlTm~~~A~~l~~~-------~~~~~v~fvvDR~dLd~Q~~~~f~~~~~~~~~----~~-~~~s~~~ 341 (962)
T COG0610 274 KGGYIWHTQGSGKTLTMFKLARLLLEL-------PKNPKVLFVVDRKDLDDQTSDEFQSFGKVAFN----DP-KAESTSE 341 (962)
T ss_pred CceEEEeecCCchHHHHHHHHHHHHhc-------cCCCeEEEEechHHHHHHHHHHHHHHHHhhhh----cc-cccCHHH
Confidence 468999999999999977766555544 34788999999999999999999998654221 11 4566777
Q ss_pred HHHHHcCC-CCEEEeCChHHHHHHhhcCCC-cCCceeEEEEcchhHHHhcCchHHHHHHHHHhccCCCCCCCCCCccccc
Q 010357 137 EKARLRKG-ISILVATPGRLLDHLKHTSSF-LHTNLRWIIFDEADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNV 214 (512)
Q Consensus 137 ~~~~~~~~-~~Iiv~Tp~~l~~~l~~~~~~-~~~~~~~lV~DEah~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 214 (512)
..+.+... ..|+|+|-++|-......... .-.+--+||+||||+.. ++.....+-..++
T Consensus 342 Lk~~l~~~~~~ii~TTIQKf~~~~~~~~~~~~~~~~ivvI~DEaHRSQ---~G~~~~~~~~~~~---------------- 402 (962)
T COG0610 342 LKELLEDGKGKIIVTTIQKFNKAVKEDELELLKRKNVVVIIDEAHRSQ---YGELAKLLKKALK---------------- 402 (962)
T ss_pred HHHHHhcCCCcEEEEEecccchhhhcccccccCCCcEEEEEechhhcc---ccHHHHHHHHHhc----------------
Confidence 77777755 489999999998877653111 11222379999999843 4444444444444
Q ss_pred ceeEEEEEEecchhhHHH-HHhhcCCCe-EEccCCCcCCCCccccccCCc-c-----cchhhhccCCCcccccccc--cc
Q 010357 215 KRQNLLLSATLNEKVNHL-AKISLETPV-LIGLDEKKLPEDKSHVRFGSL-E-----SDVKEEVEHPSTTMRSTTE--DF 284 (512)
Q Consensus 215 ~~~~i~~SAT~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~-----~~~~~~~~~~~~~~~~~~~--~~ 284 (512)
+...+++|+||-..-..- ....++.+. .+.+...-.....-.+.+... . ................... ..
T Consensus 403 ~a~~~gFTGTPi~~~d~~tt~~~fg~ylh~Y~i~daI~Dg~vl~i~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 482 (962)
T COG0610 403 KAIFIGFTGTPIFKEDKDTTKDVFGDYLHTYTITDAIRDGAVLPVYYENRVELELIEESIKEEAEELDERIEEITEDILE 482 (962)
T ss_pred cceEEEeeCCccccccccchhhhhcceeEEEecchhhccCceeeEEEeecccccccccchhhhhhhhHHHHhhhHHHHHH
Confidence 578899999985321111 111222221 111111100000001111000 0 0000000000000000000 00
Q ss_pred ccccceeeeEEEecCCchHHHHHHHHHhhhc--cccCceEEEEeecchhhhhHHHhhhhhcCCCCC--CChhHHHhhhhc
Q 010357 285 KLPAQLVQRYVKVPCGSRLAVLLSILKHLFD--TEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHS--QPDMELKQLFLR 360 (512)
Q Consensus 285 ~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~--~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~--~~~~~~~~~~~~ 360 (512)
.........-.......+.......+..++. .....++++.++++..+..+++........+.. .....+......
T Consensus 483 ~~~k~~~~~~~~~~~~~r~~~~a~~i~~~f~~~~~~~~kam~V~~sr~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 562 (962)
T COG0610 483 KIKKKTKNLEFLAMLAVRLIRAAKDIYDHFKKEEVFDLKAMVVASSRKVAVELYEAEIAARLDWHSKESLEGAIKDYNTE 562 (962)
T ss_pred HHHHHHhhhhHHhcchHHHHHHHHHHHHHHHhhcccCceEEEEEechHHHHHhHHHHhhhhhhhhhhhhhhhHHHHHHhh
Confidence 0000000000011112233333333333322 344568999999988555555554433211110 001111111111
Q ss_pred cceee----ecCCCCHHHHHHHHHh--hhcCCCcEEEeecccccCCCCCCCcEEEEeCCCCChhHHHHhhhhcccC
Q 010357 361 CKTFR----LHGNMKQEDRRTTFGA--FKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRVGRTARL 430 (512)
Q Consensus 361 ~~v~~----l~g~~~~~~r~~~~~~--f~~~~~~vLvaT~~~~~Gldip~~~~VI~~~~p~s~~~~~Q~~GRagR~ 430 (512)
..... .|... ...+.....+ ..+...++||.++++-.|+|.|.++ .+..|.|.-.-.++|.+.|+.|.
T Consensus 563 ~~~~~~~~~~~~~~-~~~~~~~~~r~~~~~d~~kilIV~dmlLTGFDaP~L~-TmYvDK~Lk~H~L~QAisRtNR~ 636 (962)
T COG0610 563 FETDFDKKQSHAKL-KDEKKDLIKRFKLKDDPLDLLIVVDMLLTGFDAPCLN-TLYVDKPLKYHNLIQAISRTNRV 636 (962)
T ss_pred cccchhhhhhhHHH-HHHHhhhhhhhcCcCCCCCEEEEEccccccCCccccc-eEEeccccccchHHHHHHHhccC
Confidence 11000 02222 2233444444 4456789999999999999999766 56678888888999999999995
No 161
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=99.48 E-value=8.9e-13 Score=131.85 Aligned_cols=138 Identities=18% Similarity=0.301 Sum_probs=107.8
Q ss_pred CchHHHHHHHHHhhhccccCceEEEEeecchhhhhHHHhhhhhcCCCCCCC-----hhHHHhhhhccceeeecCCCCHHH
Q 010357 300 GSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQP-----DMELKQLFLRCKTFRLHGNMKQED 374 (512)
Q Consensus 300 ~~k~~~l~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~-----~~~~~~~~~~~~v~~l~g~~~~~~ 374 (512)
+.|+..|+++|..- ..-+.++|||..+......+-.+|........+-. ...-+.-+-|..-+.+.|..+...
T Consensus 1125 SgKmiLLleIL~mc--eeIGDKlLVFSQSL~SLdLIe~fLe~v~r~gk~~~d~~~~~~~eGkW~~GkDyyriDGst~s~~ 1202 (1567)
T KOG1015|consen 1125 SGKMILLLEILRMC--EEIGDKLLVFSQSLISLDLIEDFLELVSREGKEDKDKPLIYKGEGKWLRGKDYYRLDGSTTSQS 1202 (1567)
T ss_pred CcceehHHHHHHHH--HHhcceeEEeecccchhHHHHHHHHhhcccCccccccccccccccceecCCceEEecCcccHHH
Confidence 46667777777654 34578999999999988888887765322211100 111112234777889999999999
Q ss_pred HHHHHHhhhcCCC----cEEEeecccccCCCCCCCcEEEEeCCCCChhHHHHhhhhcccCCCCccEEEe
Q 010357 375 RRTTFGAFKTEKK----ALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRVGRTARLGERGDSLLF 439 (512)
Q Consensus 375 r~~~~~~f~~~~~----~vLvaT~~~~~Gldip~~~~VI~~~~p~s~~~~~Q~~GRagR~g~~g~~~~~ 439 (512)
|..+.++|.+-.. -.||+|.+.+.|+|+-.++.||++|..|+|.--.|.+=|+.|.|+..-||+|
T Consensus 1203 R~k~~~~FNdp~NlRaRl~LISTRAGsLGiNLvAANRVIIfDasWNPSyDtQSIFRvyRfGQtKPvyiY 1271 (1567)
T KOG1015|consen 1203 RKKWAEEFNDPTNLRARLFLISTRAGSLGINLVAANRVIIFDASWNPSYDTQSIFRVYRFGQTKPVYIY 1271 (1567)
T ss_pred HHHHHHHhcCcccceeEEEEEeeccCccccceeecceEEEEecccCCccchHHHHHHHhhcCcCceeeh
Confidence 9999999997532 2699999999999999999999999999999999999999999999888876
No 162
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=99.46 E-value=1e-10 Score=112.25 Aligned_cols=315 Identities=15% Similarity=0.134 Sum_probs=209.8
Q ss_pred CCceEEEEcCcHHHHHHHHHHHHHHHhh-------------cCC------cceEEEeCCCchHHHHHHHcC---------
Q 010357 92 SGTFALVLVPTRELCLQVYEILHKLLHR-------------FHW------IVPGYVMGGENRSKEKARLRK--------- 143 (512)
Q Consensus 92 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~-------------~~~------~~~~~~~~g~~~~~~~~~~~~--------- 143 (512)
..+++|||+|+|..|.++.+.+..++.. ++. ........+....+......+
T Consensus 36 tRPkVLIL~P~R~~A~~~V~~Li~l~~~~~~~~nk~RF~~efg~~~~~~~~~~~~~~~~~kP~D~~~~F~GN~DD~FrlG 115 (442)
T PF06862_consen 36 TRPKVLILLPFRNSALRIVETLISLLPPGKQVENKKRFEEEFGLPEDEDDDEEPPEFKKSKPEDFKALFSGNNDDCFRLG 115 (442)
T ss_pred CCceEEEEcccHHHHHHHHHHHHHHcCccchHHHHHHHHHHcCCCccccchhhhccccCCCchhHHHhcCCCccceEEEe
Confidence 3578999999999999999988887643 110 000000001112222222211
Q ss_pred ---------------CCCEEEeCChHHHHHHhh-----cCCCcCCceeEEEEcchhHHHhcCchHHHHHHHHHhccCCCC
Q 010357 144 ---------------GISILVATPGRLLDHLKH-----TSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILGSRNIG 203 (512)
Q Consensus 144 ---------------~~~Iiv~Tp~~l~~~l~~-----~~~~~~~~~~~lV~DEah~l~~~~~~~~~~~i~~~~~~~~~~ 203 (512)
..|||||||=-|...+.. ...-.++++.++|+|.||.++-. -+..+..++..+......
T Consensus 116 ik~trk~ikLys~Fy~SDIIiASPLGLr~~i~~~~~~~~d~DFLSSIEv~iiD~ad~l~MQ-NW~Hv~~v~~~lN~~P~~ 194 (442)
T PF06862_consen 116 IKFTRKSIKLYSDFYSSDIIIASPLGLRMIIGEEGEKKRDYDFLSSIEVLIIDQADVLLMQ-NWEHVLHVFEHLNLQPKK 194 (442)
T ss_pred EEEecCeeeeecccccCCEEEEChHHHHHHhccccccccccchhheeeeEeechhhHHHHh-hHHHHHHHHHHhccCCCC
Confidence 357999999888777763 22336789999999999976543 567777788887766544
Q ss_pred CCC---------CCCcccccceeEEEEEEecchhhHHHHHhhcCCC-eEEccCCCcCCCCccccccCCcccchhhhccCC
Q 010357 204 SIG---------EGNEVSNVKRQNLLLSATLNEKVNHLAKISLETP-VLIGLDEKKLPEDKSHVRFGSLESDVKEEVEHP 273 (512)
Q Consensus 204 ~~~---------~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (512)
... ..+.....-+|.|++|+...+.+..+......+. ..+.+...... .
T Consensus 195 ~~~~DfsRVR~w~Ldg~a~~~RQtii~S~~~~pe~~slf~~~~~N~~G~v~~~~~~~~-~-------------------- 253 (442)
T PF06862_consen 195 SHDTDFSRVRPWYLDGQAKYYRQTIIFSSFQTPEINSLFNRHCQNYAGKVRLKPPYEA-S-------------------- 253 (442)
T ss_pred CCCCCHHHHHHHHHcCcchheeEeEEecCCCCHHHHHHHHhhCcCccceEEEeecccc-c--------------------
Confidence 432 1111234567999999999998888887744433 23322222100 0
Q ss_pred CccccccccccccccceeeeEEEecCC-------chHHHHHHHHHhhhc-cccCceEEEEeecchhhhhHHHhhhhhcCC
Q 010357 274 STTMRSTTEDFKLPAQLVQRYVKVPCG-------SRLAVLLSILKHLFD-TEVSQKLVVFFSTCDAVDFHYSLLSEFQWS 345 (512)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~k~~~l~~~l~~~~~-~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~ 345 (512)
-.-......+.|.+..++.. .+.......+--.+. ......+|||+++--+-..+.++|+..
T Consensus 254 -------g~i~~v~~~v~Q~F~r~~~~s~~~~~d~Rf~yF~~~iLP~l~~~~~~~~~LIfIPSYfDfVRlRN~lk~~--- 323 (442)
T PF06862_consen 254 -------GVISQVVVQVRQVFQRFDCSSPADDPDARFKYFTKKILPQLKRDSKMSGTLIFIPSYFDFVRLRNYLKKE--- 323 (442)
T ss_pred -------eeeeccccCCceEEEEecCCCcchhhhHHHHHHHHHHHHHhhhccCCCcEEEEecchhhhHHHHHHHHhc---
Confidence 00012234455566554432 233333332222222 445689999999999999999999976
Q ss_pred CCCCChhHHHhhhhccceeeecCCCCHHHHHHHHHhhhcCCCcEEEeeccc--ccCCCCCCCcEEEEeCCCCChhHHHHh
Q 010357 346 PHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVA--ARGLDFPKVKCIIQYDSAGEATEYVHR 423 (512)
Q Consensus 346 ~~~~~~~~~~~~~~~~~v~~l~g~~~~~~r~~~~~~f~~~~~~vLvaT~~~--~~Gldip~~~~VI~~~~p~s~~~~~Q~ 423 (512)
+.....+|...+..+-...-..|.+|+..+|+.|.-+ -+-..+.++..||.|++|..+.-|...
T Consensus 324 --------------~~sF~~i~EYts~~~isRAR~~F~~G~~~iLL~TER~HFfrRy~irGi~~viFY~~P~~p~fY~El 389 (442)
T PF06862_consen 324 --------------NISFVQISEYTSNSDISRARSQFFHGRKPILLYTERFHFFRRYRIRGIRHVIFYGPPENPQFYSEL 389 (442)
T ss_pred --------------CCeEEEecccCCHHHHHHHHHHHHcCCceEEEEEhHHhhhhhceecCCcEEEEECCCCChhHHHHH
Confidence 7788889999999999999999999999999999864 456778899999999999999998777
Q ss_pred hhhcccCC------CCccEEEecCccchhHHHHHH
Q 010357 424 VGRTARLG------ERGDSLLFLQPVEMDYLQDLE 452 (512)
Q Consensus 424 ~GRagR~g------~~g~~~~~~~~~~~~~~~~l~ 452 (512)
+.-.+... ....|.+++++-|.-.++++.
T Consensus 390 ~n~~~~~~~~~~~~~~~~~~~lysk~D~~~LErIV 424 (442)
T PF06862_consen 390 LNMLDESSGGEVDAADATVTVLYSKYDALRLERIV 424 (442)
T ss_pred HhhhcccccccccccCceEEEEecHhHHHHHHHHh
Confidence 75444332 257899999998877666654
No 163
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=99.32 E-value=1.4e-11 Score=117.26 Aligned_cols=155 Identities=22% Similarity=0.240 Sum_probs=92.9
Q ss_pred HHHHHHHHhh-------------cCCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcHHHHHHHHH
Q 010357 45 VQAQAIPVIL-------------SGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYE 111 (512)
Q Consensus 45 ~Q~~~~~~~~-------------~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~ 111 (512)
||.+++..++ ..+.++++..+|+|||+.++..+......... .....+||++|. .+..||..
T Consensus 1 ~Q~~~v~~m~~~~~~~~~~~~~~~~~g~lL~de~GlGKT~~~i~~~~~l~~~~~~----~~~~~~LIv~P~-~l~~~W~~ 75 (299)
T PF00176_consen 1 HQLEAVRWMLDRELVEEYPNSESPPRGGLLADEMGLGKTITAIALISYLKNEFPQ----RGEKKTLIVVPS-SLLSQWKE 75 (299)
T ss_dssp HHHHHHHHHHHHH----TTSSSTTT-EEEE---TTSSHHHHHHHHHHHHHHCCTT----SS-S-EEEEE-T-TTHHHHHH
T ss_pred CHHHHHHHHHHHhhhhcccccccCCCCEEEEECCCCCchhhhhhhhhhhhhcccc----ccccceeEeecc-chhhhhhh
Confidence 6777776653 33578999999999999988877644333111 112249999999 78899999
Q ss_pred HHHHHHhhcCCcceEEEeCCCc-hHHHHHHHcCCCCEEEeCChHHH-----HHHhhcCCCcCCceeEEEEcchhHHHhcC
Q 010357 112 ILHKLLHRFHWIVPGYVMGGEN-RSKEKARLRKGISILVATPGRLL-----DHLKHTSSFLHTNLRWIIFDEADRILELG 185 (512)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~Iiv~Tp~~l~-----~~l~~~~~~~~~~~~~lV~DEah~l~~~~ 185 (512)
++..++.... . ......|.. ............+++|+|++.+. ..... +..-++++||+||+|.+.+
T Consensus 76 E~~~~~~~~~-~-~v~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~~~~~~~~---l~~~~~~~vIvDEaH~~k~-- 148 (299)
T PF00176_consen 76 EIEKWFDPDS-L-RVIIYDGDSERRRLSKNQLPKYDVVITTYETLRKARKKKDKED---LKQIKWDRVIVDEAHRLKN-- 148 (299)
T ss_dssp HHHHHSGT-T-S--EEEESSSCHHHHTTSSSCCCSSEEEEEHHHHH--TSTHTTHH---HHTSEEEEEEETTGGGGTT--
T ss_pred hhcccccccc-c-cccccccccccccccccccccceeeeccccccccccccccccc---cccccceeEEEeccccccc--
Confidence 9999975322 2 333444444 22222233445789999999998 21111 1112589999999999843
Q ss_pred chHHHHHHHHHhccCCCCCCCCCCcccccceeEEEEEEecch
Q 010357 186 FGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNE 227 (512)
Q Consensus 186 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~ 227 (512)
........+..+. ....+++||||..
T Consensus 149 ~~s~~~~~l~~l~----------------~~~~~lLSgTP~~ 174 (299)
T PF00176_consen 149 KDSKRYKALRKLR----------------ARYRWLLSGTPIQ 174 (299)
T ss_dssp TTSHHHHHHHCCC----------------ECEEEEE-SS-SS
T ss_pred ccccccccccccc----------------cceEEeecccccc
Confidence 3344444444443 5567889999854
No 164
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=99.32 E-value=7.2e-12 Score=99.73 Aligned_cols=137 Identities=22% Similarity=0.216 Sum_probs=79.4
Q ss_pred cCCCEEEEccCCChHhHHHHHHHH-HHHhhcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHHhhcCCcceEEEeCCCc
Q 010357 55 SGRHVLVNAATGTGKTVAYLAPII-NHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGEN 133 (512)
Q Consensus 55 ~~~~~lv~~pTGsGKT~~~~~~~~-~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~g~~ 133 (512)
+|+-.++-..+|+|||--.+.-++ +.+.. +.++|++.|||.++..+.+.++..- +........
T Consensus 3 kg~~~~~d~hpGaGKTr~vlp~~~~~~i~~---------~~rvLvL~PTRvva~em~~aL~~~~-------~~~~t~~~~ 66 (148)
T PF07652_consen 3 KGELTVLDLHPGAGKTRRVLPEIVREAIKR---------RLRVLVLAPTRVVAEEMYEALKGLP-------VRFHTNARM 66 (148)
T ss_dssp TTEEEEEE--TTSSTTTTHHHHHHHHHHHT---------T--EEEEESSHHHHHHHHHHTTTSS-------EEEESTTSS
T ss_pred CCceeEEecCCCCCCcccccHHHHHHHHHc---------cCeEEEecccHHHHHHHHHHHhcCC-------cccCceeee
Confidence 455568899999999987655444 44444 7789999999999998888776431 111111111
Q ss_pred hHHHHHHHcCCCCEEEeCChHHHHHHhhcCCCcCCceeEEEEcchhHHHhcCchHHHHHHHHHhccCCCCCCCCCCcccc
Q 010357 134 RSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSN 213 (512)
Q Consensus 134 ~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lV~DEah~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 213 (512)
. ....+.-|-++|...+...+.. .....+++++|+||||..... .-.....+..+....
T Consensus 67 ~-----~~~g~~~i~vMc~at~~~~~~~--p~~~~~yd~II~DEcH~~Dp~--sIA~rg~l~~~~~~g------------ 125 (148)
T PF07652_consen 67 R-----THFGSSIIDVMCHATYGHFLLN--PCRLKNYDVIIMDECHFTDPT--SIAARGYLRELAESG------------ 125 (148)
T ss_dssp ---------SSSSEEEEEHHHHHHHHHT--SSCTTS-SEEEECTTT--SHH--HHHHHHHHHHHHHTT------------
T ss_pred c-----cccCCCcccccccHHHHHHhcC--cccccCccEEEEeccccCCHH--HHhhheeHHHhhhcc------------
Confidence 1 1124456889999998877765 233468999999999964321 112222333332211
Q ss_pred cceeEEEEEEecchhh
Q 010357 214 VKRQNLLLSATLNEKV 229 (512)
Q Consensus 214 ~~~~~i~~SAT~~~~~ 229 (512)
...+|++|||+|...
T Consensus 126 -~~~~i~mTATPPG~~ 140 (148)
T PF07652_consen 126 -EAKVIFMTATPPGSE 140 (148)
T ss_dssp -S-EEEEEESS-TT--
T ss_pred -CeeEEEEeCCCCCCC
Confidence 467999999998654
No 165
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=99.28 E-value=6.5e-11 Score=110.21 Aligned_cols=76 Identities=28% Similarity=0.361 Sum_probs=59.5
Q ss_pred cCCCCCcHHHHHHH----HHhhcCCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcHHHHHHHHHH
Q 010357 37 LGFEAPTKVQAQAI----PVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEI 112 (512)
Q Consensus 37 ~~~~~~~~~Q~~~~----~~~~~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~ 112 (512)
|+|. |||.|.+.. ..+.+|.++++.+|||+|||++++.|++..+...... ..+.+++|+++|..+..|....
T Consensus 5 FPy~-~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~---~~~~kvi~~t~T~~~~~q~i~~ 80 (289)
T smart00488 5 FPYE-PYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPER---IQKIKLIYLSRTVSEIEKRLEE 80 (289)
T ss_pred CCCC-CCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCccc---ccccceeEEeccHHHHHHHHHH
Confidence 6787 899999944 4455788999999999999999999998776542221 0234799999999998888777
Q ss_pred HHHH
Q 010357 113 LHKL 116 (512)
Q Consensus 113 ~~~~ 116 (512)
++..
T Consensus 81 l~~~ 84 (289)
T smart00488 81 LRKL 84 (289)
T ss_pred HHhc
Confidence 7654
No 166
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=99.28 E-value=6.5e-11 Score=110.21 Aligned_cols=76 Identities=28% Similarity=0.361 Sum_probs=59.5
Q ss_pred cCCCCCcHHHHHHH----HHhhcCCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcHHHHHHHHHH
Q 010357 37 LGFEAPTKVQAQAI----PVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEI 112 (512)
Q Consensus 37 ~~~~~~~~~Q~~~~----~~~~~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~ 112 (512)
|+|. |||.|.+.. ..+.+|.++++.+|||+|||++++.|++..+...... ..+.+++|+++|..+..|....
T Consensus 5 FPy~-~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~---~~~~kvi~~t~T~~~~~q~i~~ 80 (289)
T smart00489 5 FPYE-PYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPER---IQKIKLIYLSRTVSEIEKRLEE 80 (289)
T ss_pred CCCC-CCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCccc---ccccceeEEeccHHHHHHHHHH
Confidence 6787 899999944 4455788999999999999999999998776542221 0234799999999998888777
Q ss_pred HHHH
Q 010357 113 LHKL 116 (512)
Q Consensus 113 ~~~~ 116 (512)
++..
T Consensus 81 l~~~ 84 (289)
T smart00489 81 LRKL 84 (289)
T ss_pred HHhc
Confidence 7654
No 167
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=99.25 E-value=3.9e-10 Score=114.85 Aligned_cols=334 Identities=18% Similarity=0.192 Sum_probs=200.5
Q ss_pred CCCCCcHHHHHHHHHhhcCCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHH
Q 010357 38 GFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLL 117 (512)
Q Consensus 38 ~~~~~~~~Q~~~~~~~~~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 117 (512)
|+. |++.|.-.. +.-...-+.-+-||-|||+++.+|+.-.... |..+.+++..--|+.--+.+...+.
T Consensus 78 g~~-~~dVQliG~--i~lh~g~iaEM~TGEGKTL~atlp~ylnaL~---------gkgVhvVTvNdYLA~RDae~m~~l~ 145 (822)
T COG0653 78 GMR-HFDVQLLGG--IVLHLGDIAEMRTGEGKTLVATLPAYLNALA---------GKGVHVVTVNDYLARRDAEWMGPLY 145 (822)
T ss_pred CCC-hhhHHHhhh--hhhcCCceeeeecCCchHHHHHHHHHHHhcC---------CCCcEEeeehHHhhhhCHHHHHHHH
Confidence 554 666666544 3344457889999999999999998655544 6668888889999999899999998
Q ss_pred hhcCCcceEEEeCCCchHHHHHHHcCCCCEEEeCChHH-HHHHhh-----cCCCcCCceeEEEEcchhHHHhc-------
Q 010357 118 HRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRL-LDHLKH-----TSSFLHTNLRWIIFDEADRILEL------- 184 (512)
Q Consensus 118 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~Iiv~Tp~~l-~~~l~~-----~~~~~~~~~~~lV~DEah~l~~~------- 184 (512)
..+| ..+++...+......... ..+||..+|...| ++.+.. ........+.+.|+||++.++=.
T Consensus 146 ~~LG-lsvG~~~~~m~~~ek~~a--Y~~DItY~TnnElGFDYLRDNm~~~~ee~vqr~~~faIvDEvDSILIDEARtPLi 222 (822)
T COG0653 146 EFLG-LSVGVILAGMSPEEKRAA--YACDITYGTNNELGFDYLRDNMVTSQEEKVQRGLNFAIVDEVDSILIDEARTPLI 222 (822)
T ss_pred HHcC-CceeeccCCCChHHHHHH--HhcCceeccccccCcchhhhhhhccHHHhhhccCCeEEEcchhheeeecccccee
Confidence 8877 566666666544443333 3579999998765 222221 11123346789999999984321
Q ss_pred ---------CchHHHHHHHHHhccCC---C--CC----CC----------------------------------------
Q 010357 185 ---------GFGKEIEEILDILGSRN---I--GS----IG---------------------------------------- 206 (512)
Q Consensus 185 ---------~~~~~~~~i~~~~~~~~---~--~~----~~---------------------------------------- 206 (512)
..+..+..+...+.... . .+ .+
T Consensus 223 ISG~~~~~~~~Y~~~~~~v~~l~~~~d~~iDek~k~v~lte~G~~kae~~f~~~~Ly~~en~~~~h~~~~alrA~~l~~~ 302 (822)
T COG0653 223 ISGPAEDSSELYKKVDDLVRLLSEDEDFTIDEKSKNVSLTESGLEKAEELLGIENLYDLENVNLVHHLNQALRAHILFFR 302 (822)
T ss_pred eecccccCchHHHHHHHHHHHhccccceeecchhcccccchhhHHHHHHHhCcccccchhhHHHHhhHHHHHHHHHHhhc
Confidence 01222222222222110 0 00 00
Q ss_pred -------------------------CCCc-------------cc---------------ccceeEEEEEEecchhhHHHH
Q 010357 207 -------------------------EGNE-------------VS---------------NVKRQNLLLSATLNEKVNHLA 233 (512)
Q Consensus 207 -------------------------~~~~-------------~~---------------~~~~~~i~~SAT~~~~~~~~~ 233 (512)
..+. .. ..-.++.+||.|.......|.
T Consensus 303 D~dYIVrd~ev~IvD~ftGR~m~gRr~s~GLhQAiEAKEgv~i~~e~~tlatITfQn~fR~y~kl~gmTGTa~te~~EF~ 382 (822)
T COG0653 303 DVDYIVRDGEVVIVDEFTGRMMEGRRWSDGLHQAIEAKEGVEIQEENQTLATITFQNLFRLYPKLAGMTGTADTEEEEFD 382 (822)
T ss_pred CCeeEEecCeEEEEecccCCcccCcCCCchhHHHHHHhcCCcccccceeehhhhHHHHHhhhhhhcCCCCcchhhhhhhh
Confidence 0000 00 001123444444443334444
Q ss_pred HhhcCCCeEEccCCCcCCCCccccccCCcccchhhhccCCCccccccccccccccceeeeEEEecCCchHHHHHHHHHhh
Q 010357 234 KISLETPVLIGLDEKKLPEDKSHVRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCGSRLAVLLSILKHL 313 (512)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~ 313 (512)
..+......+..... ..+.-...........|..+++..++..
T Consensus 383 ~iY~l~vv~iPTnrp-------------------------------------~~R~D~~D~vy~t~~~K~~Aiv~~I~~~ 425 (822)
T COG0653 383 VIYGLDVVVIPTNRP-------------------------------------IIRLDEPDLVYKTEEEKFKAIVEDIKER 425 (822)
T ss_pred hccCCceeeccCCCc-------------------------------------ccCCCCccccccchHHHHHHHHHHHHHH
Confidence 433332222211110 0000111222334567888888888877
Q ss_pred hccccCceEEEEeecchhhhhHHHhhhhhcCCCCCCChhHHHhhhhccceeeecCCCCHHHHHHHHHhhhcCCCcEEEee
Q 010357 314 FDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLST 393 (512)
Q Consensus 314 ~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~l~g~~~~~~r~~~~~~f~~~~~~vLvaT 393 (512)
. ..+.|+||-+.+.+..+.+.+.|.+. +++...+...-...+-+.+.+.-..| .|=|||
T Consensus 426 ~--~~gqPvLvgT~sie~SE~ls~~L~~~-----------------~i~h~VLNAk~h~~EA~Iia~AG~~g--aVTiAT 484 (822)
T COG0653 426 H--EKGQPVLVGTVSIEKSELLSKLLRKA-----------------GIPHNVLNAKNHAREAEIIAQAGQPG--AVTIAT 484 (822)
T ss_pred H--hcCCCEEEcCcceecchhHHHHHHhc-----------------CCCceeeccccHHHHHHHHhhcCCCC--cccccc
Confidence 4 56789999999999999999999987 66666666664433334444333333 688999
Q ss_pred cccccCCCCCCCc-----------EEEEeCCCCChhHHHHhhhhcccCCCCccEEEecCccc
Q 010357 394 DVAARGLDFPKVK-----------CIIQYDSAGEATEYVHRVGRTARLGERGDSLLFLQPVE 444 (512)
Q Consensus 394 ~~~~~Gldip~~~-----------~VI~~~~p~s~~~~~Q~~GRagR~g~~g~~~~~~~~~~ 444 (512)
+++++|-|+.--. +||-.....|-.---|.-||+||.|-+|.+-.|++-+|
T Consensus 485 NMAGRGTDIkLg~~~~~V~~lGGL~VIgTERhESRRIDnQLRGRsGRQGDpG~S~F~lSleD 546 (822)
T COG0653 485 NMAGRGTDIKLGGNPEFVMELGGLHVIGTERHESRRIDNQLRGRAGRQGDPGSSRFYLSLED 546 (822)
T ss_pred ccccCCcccccCCCHHHHHHhCCcEEEecccchhhHHHHHhhcccccCCCcchhhhhhhhHH
Confidence 9999999984211 45555555455444588999999999999888887655
No 168
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=99.13 E-value=9.2e-10 Score=110.35 Aligned_cols=350 Identities=17% Similarity=0.163 Sum_probs=194.9
Q ss_pred HHHHHhhcCCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHH-HHhhcCCcceE
Q 010357 48 QAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHK-LLHRFHWIVPG 126 (512)
Q Consensus 48 ~~~~~~~~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~-~~~~~~~~~~~ 126 (512)
+.+..+..+.-+++.+.||+|||..+...+++.+....... ...+.+.-|++-.+.-+++.+.. -.+..+..+
T Consensus 385 ~i~q~v~dn~v~~I~getgcgk~tq~aq~iLe~~~~ns~g~----~~na~v~qprrisaisiaerva~er~e~~g~tv-- 458 (1282)
T KOG0921|consen 385 EILQAVAENRVVIIKGETGCGKSTQVAQFLLESFLENSNGA----SFNAVVSQPRRISAISLAERVANERGEEVGETC-- 458 (1282)
T ss_pred HHHHHHhcCceeeEeecccccchhHHHHHHHHHHhhccccc----cccceeccccccchHHHHHHHHHhhHHhhcccc--
Confidence 34455556667889999999999999999999988755421 23367777888766666655432 222222111
Q ss_pred EEeCCCchHHHHHHHcCCCCEEEeCChHHHHHHhhcCCCcCCceeEEEEcchhHHHhcCchHHHHHHHHHhccCCCCCCC
Q 010357 127 YVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILGSRNIGSIG 206 (512)
Q Consensus 127 ~~~~g~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lV~DEah~l~~~~~~~~~~~i~~~~~~~~~~~~~ 206 (512)
|.+..-.........-|+++|.+-+++.+... +..+.++|+||.|.-.- -...+..++.......
T Consensus 459 ----gy~vRf~Sa~prpyg~i~fctvgvllr~~e~g----lrg~sh~i~deiherdv--~~dfll~~lr~m~~ty----- 523 (1282)
T KOG0921|consen 459 ----GYNVRFDSATPRPYGSIMFCTVGVLLRMMENG----LRGISHVIIDEIHERDV--DTDFVLIVLREMISTY----- 523 (1282)
T ss_pred ----cccccccccccccccceeeeccchhhhhhhhc----ccccccccchhhhhhcc--chHHHHHHHHhhhccc-----
Confidence 11111111111122369999999998887652 23677999999997332 2222333333322211
Q ss_pred CCCcccccceeEEEEEEecchh--------------------hHHHHHhhcCCCeEEccCCCcCCCCccccccCCcccch
Q 010357 207 EGNEVSNVKRQNLLLSATLNEK--------------------VNHLAKISLETPVLIGLDEKKLPEDKSHVRFGSLESDV 266 (512)
Q Consensus 207 ~~~~~~~~~~~~i~~SAT~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (512)
...+.+++|||+.-+ +..++...+..+.........-.....+ .+.....
T Consensus 524 -------~dl~v~lmsatIdTd~f~~~f~~~p~~~~~grt~pvq~F~led~~~~~~~vp~~~~~~k~k~~---~~~~~~~ 593 (1282)
T KOG0921|consen 524 -------RDLRVVLMSATIDTDLFTNFFSSIPDVTVHGRTFPVQSFFLEDIIQMTQFVPSEPSQKKRKKD---DDEEDEE 593 (1282)
T ss_pred -------hhhhhhhhhcccchhhhhhhhccccceeeccccccHHHHHHHHhhhhhhccCCCcCccchhhc---ccccCch
Confidence 155666777776422 1222222222221111111100000000 0000000
Q ss_pred hhhccCCCccccccccccccccceeeeEEEecCCchHHHH-HHHHHhhhccccCceEEEEeecchhhhhHHHhhhhhcCC
Q 010357 267 KEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCGSRLAVL-LSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWS 345 (512)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l-~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~ 345 (512)
.+.+.. ......+....+...............-.+ ..++..+....-.+.+++|.+.......+..++......
T Consensus 594 ~ddK~~----n~n~~~dd~~~~~~~~am~~~se~d~~f~l~Eal~~~i~s~~i~gailvflpgwa~i~~L~~~ll~~~~f 669 (1282)
T KOG0921|consen 594 VDDKGR----NMNILCDPSYNESTRTAMSRLSEKDIPFGLIEALLNDIASRNIDGAVLVFLPGWAEIMTLCNRLLEHQEF 669 (1282)
T ss_pred hhhccc----ccccccChhhcchhhhhhhcchhhcchhHHHHHHHhhhcccCCccceeeecCchHHhhhhhhhhhhhhhh
Confidence 000000 000000000001111111111112222222 223333333455678999999999999999888765321
Q ss_pred CCCCChhHHHhhhhccceeeecCCCCHHHHHHHHHhhhcCCCcEEEeecccccCCCCCCCcEEEEeCCC-----------
Q 010357 346 PHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSA----------- 414 (512)
Q Consensus 346 ~~~~~~~~~~~~~~~~~v~~l~g~~~~~~r~~~~~~f~~~~~~vLvaT~~~~~Gldip~~~~VI~~~~p----------- 414 (512)
.. .-.+.++..|+.....+..++.+....|..++++.|.+++..+.+.++.+||+.+.-
T Consensus 670 g~----------~~~y~ilp~Hsq~~~~eqrkvf~~~p~gv~kii~stniaetsiTidd~v~vid~cka~~~~~~s~nn~ 739 (1282)
T KOG0921|consen 670 GQ----------ANKYEILPLHSQLTSQEQRKVFEPVPEGVTKIILSTNIAETSITIDDVVYVIDSCKAKEKLFTSHNNM 739 (1282)
T ss_pred cc----------chhcccccchhhcccHhhhhccCcccccccccccccceeeEeeeecceeEEEeeeeeeeeeeccccce
Confidence 11 115678888999999999999999999999999999999999888777777754421
Q ss_pred -------CChhHHHHhhhhcccCCCCccEEEecCcc
Q 010357 415 -------GEATEYVHRVGRTARLGERGDSLLFLQPV 443 (512)
Q Consensus 415 -------~s~~~~~Q~~GRagR~g~~g~~~~~~~~~ 443 (512)
.|.....||.||+||. ++|.|+.+++.-
T Consensus 740 ~~~Atvw~sktn~eqr~gr~grv-R~G~~f~lcs~a 774 (1282)
T KOG0921|consen 740 THYATVWASKTNLEQRKGRAGRV-RPGFCFHLCSRA 774 (1282)
T ss_pred eeeeeecccccchHhhcccCcee-cccccccccHHH
Confidence 2566779999999998 789888887643
No 169
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=99.12 E-value=2.8e-08 Score=103.84 Aligned_cols=68 Identities=29% Similarity=0.383 Sum_probs=54.7
Q ss_pred CCcEEEeecccccCCCCCCCcEEEEeCCCCChhHHHHhhhhcccCC--CCc-----c---EEEecCccchhHHHHHHH
Q 010357 386 KKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRVGRTARLG--ERG-----D---SLLFLQPVEMDYLQDLEK 453 (512)
Q Consensus 386 ~~~vLvaT~~~~~Gldip~~~~VI~~~~p~s~~~~~Q~~GRagR~g--~~g-----~---~~~~~~~~~~~~~~~l~~ 453 (512)
..+.+++-+++.+|.|.|++=.+.......|...-.|.+||..|.. +.| . -.++.+.+..++...|++
T Consensus 501 ~~~fifs~~al~egwd~~~~~~~~~l~~~~s~~~~~q~~gr~lr~~vnq~G~R~~~~~~~LTvianesy~dFa~~LQ~ 578 (986)
T PRK15483 501 TRRFLFSKWTLREGWDNPNVFQIAKLRSSGSETSKLQEVGRGLRLPVDENGHRVSQEEFRLNYLIDYDEKDFASKLVG 578 (986)
T ss_pred CeEEEEEhHHhhhcCCCCCeEEEEEeccCCchHHHHHHhccceeccccccCccccCccEEEEEEeCccHHHHHHHHHH
Confidence 5789999999999999999999999998999999999999999953 122 1 234456666778888776
No 170
>KOG2340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.09 E-value=6e-09 Score=98.94 Aligned_cols=368 Identities=17% Similarity=0.162 Sum_probs=220.5
Q ss_pred CCCcHHHHHHHHHhhcCCCEEE-EccCCChH--hHHHHHHHHHHHhhcCC-------CC---------------CCCCCc
Q 010357 40 EAPTKVQAQAIPVILSGRHVLV-NAATGTGK--TVAYLAPIINHLQSYSP-------RI---------------DRSSGT 94 (512)
Q Consensus 40 ~~~~~~Q~~~~~~~~~~~~~lv-~~pTGsGK--T~~~~~~~~~~~~~~~~-------~~---------------~~~~~~ 94 (512)
..+++.|.+.+..+.+.++++. ....+.|+ +-+|++-+++++..... +. ..-..+
T Consensus 215 ~pltalQ~~L~~~m~~YrDl~y~~~s~kn~~e~R~lYclH~lNHi~K~r~~IL~Nn~r~~Sqk~g~~~~~~frDQG~tRp 294 (698)
T KOG2340|consen 215 EPLTALQKELFKIMFNYRDLLYPTRSQKNGEEYRSLYCLHALNHILKTRDLILGNNRRLASQKEGENPDESFRDQGFTRP 294 (698)
T ss_pred CcchHHHHHHHHHHHhhhhhccccccccccchhhhhHHHHHHHHHHHHHHHHhcchHhhhhhhcCCCCchhhhhcCCCCc
Confidence 3689999999999999988875 23334555 45677777777644211 10 001247
Q ss_pred eEEEEcCcHHHHHHHHHHHHHHHhhcCC-----cceEEEeC---C---------CchHHHHHHH----------------
Q 010357 95 FALVLVPTRELCLQVYEILHKLLHRFHW-----IVPGYVMG---G---------ENRSKEKARL---------------- 141 (512)
Q Consensus 95 ~~lil~Pt~~L~~q~~~~~~~~~~~~~~-----~~~~~~~~---g---------~~~~~~~~~~---------------- 141 (512)
++||+||+|+-|-.+.+.+..++.+... .....+.+ | ....+....+
T Consensus 295 kVLivvpfRe~A~riVn~lis~l~G~~q~k~~V~Nk~RF~~eys~~te~~~~~~~kP~D~~~lf~GNtDD~FriGl~ftk 374 (698)
T KOG2340|consen 295 KVLIVVPFRESAYRIVNLLISLLSGDDQGKSEVWNKKRFEGEYSGPTELPPPRAKKPEDFEELFSGNTDDAFRIGLAFTK 374 (698)
T ss_pred eEEEEecchHHHHHHHHHHHHHhcCccccchhhhhhhhhchhcCCCcccCCCCCCCchhHHHHhcCCCcchhhhhHHHHH
Confidence 8999999999999999988887532211 00000000 0 0001111111
Q ss_pred --------cCCCCEEEeCChHHHHHHhhc----C-CCcCCceeEEEEcchhHHHhcCchHHHHHHHHHhccCCCCCCCC-
Q 010357 142 --------RKGISILVATPGRLLDHLKHT----S-SFLHTNLRWIIFDEADRILELGFGKEIEEILDILGSRNIGSIGE- 207 (512)
Q Consensus 142 --------~~~~~Iiv~Tp~~l~~~l~~~----~-~~~~~~~~~lV~DEah~l~~~~~~~~~~~i~~~~~~~~~~~~~~- 207 (512)
-...||+||+|=-|.-++... . .-.++++.++|+|-+|.++.. -+..+..++.++..........
T Consensus 375 KtikLys~fy~SDIlVaSPLGLRmil~n~gdkkrd~dfLSSIEl~iIDQa~~~l~Q-NwEhl~~ifdHLn~~P~k~h~~D 453 (698)
T KOG2340|consen 375 KTIKLYSKFYKSDILVASPLGLRMILGNTGDKKRDFDFLSSIELLIIDQADIMLMQ-NWEHLLHIFDHLNLQPSKQHDVD 453 (698)
T ss_pred HHHHHHhhhcccCeEEecchhhhhhhcCCCcccccchhhhhhhhhhhhhHHHHHHh-hHHHHHHHHHHhhcCcccccCCC
Confidence 124689999998887766631 1 125678999999999987655 4567778888887765443221
Q ss_pred --------CCcccccceeEEEEEEecchhhHHHHHhhcCCCe-EEccCCCcCCCCccccccCCcccchhhhccCCCcccc
Q 010357 208 --------GNEVSNVKRQNLLLSATLNEKVNHLAKISLETPV-LIGLDEKKLPEDKSHVRFGSLESDVKEEVEHPSTTMR 278 (512)
Q Consensus 208 --------~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (512)
.+.....-+|.+++|+-..+....+...++.+.. .+....-. ... .+..+.
T Consensus 454 fSRVR~wyL~~qsr~~rQtl~Fs~y~~~~~nS~fn~~c~N~~Gkv~~~~~~--~~g---si~~v~--------------- 513 (698)
T KOG2340|consen 454 FSRVRMWYLDGQSRYFRQTLLFSRYSHPLFNSLFNQYCQNMAGKVKARNLQ--SGG---SISNVG--------------- 513 (698)
T ss_pred hhheehheeccHHHHHHHHHHHHhhccHHHHHHHHHhhhhhcceeeecccc--CCC---chhhcc---------------
Confidence 1111223457778887776666665555443322 22111110 000 000000
Q ss_pred ccccccccccceeeeEEE----ecCCchHHHHHHHHHhhhccccCceEEEEeecchhhhhHHHhhhhhcCCCCCCChhHH
Q 010357 279 STTEDFKLPAQLVQRYVK----VPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMEL 354 (512)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~----~~~~~k~~~l~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 354 (512)
....++-+++.. .....+......-|--.+.......+||+.++--.-.++..+++..
T Consensus 514 ------~~l~Qvf~ri~~~si~~~~D~RFkyFv~~ImPq~~k~t~s~~LiyIPSYfDFVRvRNy~K~e------------ 575 (698)
T KOG2340|consen 514 ------IPLCQVFQRIEVKSIIETPDARFKYFVDKIMPQLIKRTESGILIYIPSYFDFVRVRNYMKKE------------ 575 (698)
T ss_pred ------chhhhhhhheeccCcccCchHHHHHHHHhhchhhcccccCceEEEecchhhHHHHHHHhhhh------------
Confidence 000111111111 1112222222222221111233467899999999999999999887
Q ss_pred HhhhhccceeeecCCCCHHHHHHHHHhhhcCCCcEEEeeccc--ccCCCCCCCcEEEEeCCCCChhHH---HHhhhhccc
Q 010357 355 KQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVA--ARGLDFPKVKCIIQYDSAGEATEY---VHRVGRTAR 429 (512)
Q Consensus 355 ~~~~~~~~v~~l~g~~~~~~r~~~~~~f~~~~~~vLvaT~~~--~~Gldip~~~~VI~~~~p~s~~~~---~Q~~GRagR 429 (512)
......+|.-.+.+.-...-+.|-.|...+|+-|.-+ -+-.++.++..||.|.+|.+|..| +.+.+|+.-
T Consensus 576 -----~i~F~~i~EYssk~~vsRAR~lF~qgr~~vlLyTER~hffrR~~ikGVk~vVfYqpP~~P~FYsEiinm~~k~~~ 650 (698)
T KOG2340|consen 576 -----EISFVMINEYSSKSKVSRARELFFQGRKSVLLYTERAHFFRRYHIKGVKNVVFYQPPNNPHFYSEIINMSDKTTS 650 (698)
T ss_pred -----hcchHHHhhhhhHhhhhHHHHHHHhcCceEEEEehhhhhhhhheecceeeEEEecCCCCcHHHHHHHhhhhhhhc
Confidence 5555666666667777778888999999999999765 467889999999999999998876 667777765
Q ss_pred CCC----CccEEEecCccchhHHHHH
Q 010357 430 LGE----RGDSLLFLQPVEMDYLQDL 451 (512)
Q Consensus 430 ~g~----~g~~~~~~~~~~~~~~~~l 451 (512)
.|+ .-.|.++|++.|.-.+..+
T Consensus 651 ~gn~d~d~~t~~ilytKyD~i~Le~i 676 (698)
T KOG2340|consen 651 QGNTDLDIFTVRILYTKYDRIRLENI 676 (698)
T ss_pred cCCccccceEEEEEeechhhHHHHHh
Confidence 543 3478899998886555443
No 171
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=99.08 E-value=7.2e-09 Score=93.70 Aligned_cols=136 Identities=22% Similarity=0.301 Sum_probs=98.7
Q ss_pred HHHHhcCCCCCcHHHHHHHHHhhcCCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcHHHHHHHHH
Q 010357 32 QLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYE 111 (512)
Q Consensus 32 ~l~~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~ 111 (512)
.....+|+. |++.|.-+.-.+..|+ |+...||-|||+++.+|+.-.... |..|-|++.+..||..-++
T Consensus 69 a~~r~~g~~-p~~vQll~~l~L~~G~--laEm~TGEGKTli~~l~a~~~AL~---------G~~V~vvT~NdyLA~RD~~ 136 (266)
T PF07517_consen 69 AARRTLGLR-PYDVQLLGALALHKGR--LAEMKTGEGKTLIAALPAALNALQ---------GKGVHVVTSNDYLAKRDAE 136 (266)
T ss_dssp HHHHHTS-----HHHHHHHHHHHTTS--EEEESTTSHHHHHHHHHHHHHHTT---------SS-EEEEESSHHHHHHHHH
T ss_pred HHHHHcCCc-ccHHHHhhhhhcccce--eEEecCCCCcHHHHHHHHHHHHHh---------cCCcEEEeccHHHhhccHH
Confidence 344455776 9999999998877774 999999999999999988877766 7889999999999999999
Q ss_pred HHHHHHhhcCCcceEEEeCCCchHHHHHHHcCCCCEEEeCChHHH-HHHhhc----CC-CcCCceeEEEEcchhHHH
Q 010357 112 ILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLL-DHLKHT----SS-FLHTNLRWIIFDEADRIL 182 (512)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~Iiv~Tp~~l~-~~l~~~----~~-~~~~~~~~lV~DEah~l~ 182 (512)
++..+...+| +.++....+.......... .++|+++|...+. +.|... .. .....++++|+||+|.++
T Consensus 137 ~~~~~y~~LG-lsv~~~~~~~~~~~r~~~Y--~~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~~~ivDEvDs~L 210 (266)
T PF07517_consen 137 EMRPFYEFLG-LSVGIITSDMSSEERREAY--AADIVYGTNSEFGFDYLRDNLALSKNEQVQRGFDFAIVDEVDSIL 210 (266)
T ss_dssp HHHHHHHHTT---EEEEETTTEHHHHHHHH--HSSEEEEEHHHHHHHHHHHTT-SSGGG--SSSSSEEEECTHHHHT
T ss_pred HHHHHHHHhh-hccccCccccCHHHHHHHH--hCcccccccchhhHHHHHHHHhhccchhccCCCCEEEEeccceEE
Confidence 9999999888 5667777766654433332 4589999998874 344331 11 124578899999999875
No 172
>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only]
Probab=98.96 E-value=2.8e-08 Score=98.33 Aligned_cols=127 Identities=19% Similarity=0.292 Sum_probs=99.2
Q ss_pred cCceEEEEeecchhhhhHHHhhhhhcCCCCCCC-hhHHHhhhhccceeeecCCCCHHHHHHHHHhhhcCCC---cEEEee
Q 010357 318 VSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQP-DMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKK---ALLLST 393 (512)
Q Consensus 318 ~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~-~~~~~~~~~~~~v~~l~g~~~~~~r~~~~~~f~~~~~---~vLvaT 393 (512)
.+.++|+|..+......+-+.+......+.... ......-.....-+.+.|..+..+|++.+++|.+.-. -++++|
T Consensus 718 ~g~kil~fSq~l~~Ld~ieeil~krq~pc~~gdnG~~aqkW~~n~sy~rldG~t~a~~rekLinqfN~e~~lsWlfllst 797 (1387)
T KOG1016|consen 718 IGEKILIFSQNLTALDMIEEILKKRQIPCKDGDNGCPAQKWEKNRSYLRLDGTTSAADREKLINQFNSEPGLSWLFLLST 797 (1387)
T ss_pred cCceEEEeecchhHHHHHHHHHhcccccCCCCCCCCchhhhhhccceecccCCcccchHHHHHHhccCCCCceeeeeehh
Confidence 356899999999988888888887765554331 1111122224445578899999999999999987532 368889
Q ss_pred cccccCCCCCCCcEEEEeCCCCChhHHHHhhhhcccCCCCccEEEecCccc
Q 010357 394 DVAARGLDFPKVKCIIQYDSAGEATEYVHRVGRTARLGERGDSLLFLQPVE 444 (512)
Q Consensus 394 ~~~~~Gldip~~~~VI~~~~p~s~~~~~Q~~GRagR~g~~g~~~~~~~~~~ 444 (512)
.+...|+|+-..+-+|.++..|++---.|.+-|+-|.|+...|++|---.|
T Consensus 798 rag~lGinLIsanr~~ifda~wnpchdaqavcRvyrYGQ~KpcfvYRlVmD 848 (1387)
T KOG1016|consen 798 RAGSLGINLISANRCIIFDACWNPCHDAQAVCRVYRYGQQKPCFVYRLVMD 848 (1387)
T ss_pred ccccccceeeccceEEEEEeecCccccchhhhhhhhhcCcCceeEEeehhh
Confidence 999999999999999999999999999999999999999999998854444
No 173
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=98.85 E-value=5e-07 Score=91.17 Aligned_cols=69 Identities=29% Similarity=0.453 Sum_probs=56.3
Q ss_pred CCCcEEEeecccccCCCCCCCcEEEEeCCCCChhHHHHhhhhcccCC--CCcc-----------EEEecCccchhHHHHH
Q 010357 385 EKKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRVGRTARLG--ERGD-----------SLLFLQPVEMDYLQDL 451 (512)
Q Consensus 385 ~~~~vLvaT~~~~~Gldip~~~~VI~~~~p~s~~~~~Q~~GRagR~g--~~g~-----------~~~~~~~~~~~~~~~l 451 (512)
...+.+++-.++-+|.|-|+|=.++-.....|..+=.|.+||..|.. +.|. -.+++..++.++++.|
T Consensus 482 ~plRFIFS~waLrEGWDNPNVFtIckL~~S~SeiSK~QeVGRGLRLaVNe~G~RV~~~~~~~n~L~vlv~~sek~Fv~~L 561 (985)
T COG3587 482 EPLRFIFSKWALREGWDNPNVFTICKLRSSGSEISKLQEVGRGLRLAVNENGERVTKDFDFPNELTVLVNESEKDFVKAL 561 (985)
T ss_pred CcceeeeehhHHhhcCCCCCeeEEEEecCCCcchHHHHHhccceeeeeccccceecccccccceEEEEecccHHHHHHHH
Confidence 34789999999999999999999999999999999999999999942 3332 2345666777888887
Q ss_pred HH
Q 010357 452 EK 453 (512)
Q Consensus 452 ~~ 453 (512)
++
T Consensus 562 qk 563 (985)
T COG3587 562 QK 563 (985)
T ss_pred HH
Confidence 76
No 174
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=98.75 E-value=5.5e-09 Score=106.91 Aligned_cols=168 Identities=19% Similarity=0.175 Sum_probs=109.6
Q ss_pred CcHHHHHHHHHhh-cCCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHHhhc
Q 010357 42 PTKVQAQAIPVIL-SGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRF 120 (512)
Q Consensus 42 ~~~~Q~~~~~~~~-~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~ 120 (512)
..|.|.+.+..+. ...++++.+|||+|||++|.+.+...+.. .++.++++++|.++|+..-.+.........
T Consensus 928 fn~~q~~if~~~y~td~~~~~g~ptgsgkt~~ae~a~~~~~~~-------~p~~kvvyIap~kalvker~~Dw~~r~~~~ 1000 (1230)
T KOG0952|consen 928 FNPIQTQIFHCLYHTDLNFLLGAPTGSGKTVVAELAIFRALSY-------YPGSKVVYIAPDKALVKERSDDWSKRDELP 1000 (1230)
T ss_pred cCCccceEEEEEeecchhhhhcCCccCcchhHHHHHHHHHhcc-------CCCccEEEEcCCchhhcccccchhhhcccC
Confidence 4455555554333 34688999999999999999988887766 446789999999999988887776665433
Q ss_pred CCcceEEEeCCCchHHHHHHHcCCCCEEEeCChHHHHHHhhcCCC-cCCceeEEEEcchhHHHhcCchHHHHHHHHHhcc
Q 010357 121 HWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSF-LHTNLRWIIFDEADRILELGFGKEIEEILDILGS 199 (512)
Q Consensus 121 ~~~~~~~~~~g~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~-~~~~~~~lV~DEah~l~~~~~~~~~~~i~~~~~~ 199 (512)
| ..+.-+.|. ...+.. -....+++|+||++......+.+.. .+.+++.+|+||.|.+ +.++++.++.+......
T Consensus 1001 g-~k~ie~tgd-~~pd~~--~v~~~~~~ittpek~dgi~Rsw~~r~~v~~v~~iv~de~hll-g~~rgPVle~ivsr~n~ 1075 (1230)
T KOG0952|consen 1001 G-IKVIELTGD-VTPDVK--AVREADIVITTPEKWDGISRSWQTRKYVQSVSLIVLDEIHLL-GEDRGPVLEVIVSRMNY 1075 (1230)
T ss_pred C-ceeEeccCc-cCCChh--heecCceEEcccccccCccccccchhhhccccceeecccccc-cCCCcceEEEEeecccc
Confidence 2 233333333 333321 1234689999999998877643322 3458899999999964 55566666655544332
Q ss_pred CCCCCCCCCCcccccceeEEEEEEecchhh
Q 010357 200 RNIGSIGEGNEVSNVKRQNLLLSATLNEKV 229 (512)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~ 229 (512)
. ........+.+++|.-+.+.-
T Consensus 1076 ~--------s~~t~~~vr~~glsta~~na~ 1097 (1230)
T KOG0952|consen 1076 I--------SSQTEEPVRYLGLSTALANAN 1097 (1230)
T ss_pred C--------ccccCcchhhhhHhhhhhccH
Confidence 1 112233567777776665443
No 175
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=98.64 E-value=2.1e-07 Score=97.42 Aligned_cols=70 Identities=17% Similarity=0.010 Sum_probs=55.0
Q ss_pred cCCCCEEEeCChHHHHHHhhcCCCcCCceeEEEEcchhHHHhcCchHHHHHHHHHhccCCCCCCCCCCcccccceeEEEE
Q 010357 142 RKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLL 221 (512)
Q Consensus 142 ~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lV~DEah~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 221 (512)
.....|+++||..+...+.. +.+.+..+..+||||||++.+..-..-+..+++.-.+ ..-+.++
T Consensus 5 y~~ggi~~~T~rIl~~DlL~-~ri~~~~itgiiv~~Ahr~~~~~~eaFI~rlyr~~n~---------------~gfIkaf 68 (814)
T TIGR00596 5 YLEGGIFSITSRILVVDLLT-GIIPPELITGILVLRADRIIESSQEAFILRLYRQKNK---------------TGFIKAF 68 (814)
T ss_pred hhcCCEEEEechhhHhHHhc-CCCCHHHccEEEEeecccccccccHHHHHHHHHHhCC---------------CcceEEe
Confidence 34557999999999877765 6677889999999999999876666666666665544 6678999
Q ss_pred EEecch
Q 010357 222 SATLNE 227 (512)
Q Consensus 222 SAT~~~ 227 (512)
||.|..
T Consensus 69 SdsP~~ 74 (814)
T TIGR00596 69 SDNPEA 74 (814)
T ss_pred cCCCcc
Confidence 999864
No 176
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=98.56 E-value=3.8e-07 Score=79.19 Aligned_cols=59 Identities=25% Similarity=0.330 Sum_probs=42.8
Q ss_pred CCCcHHHHHHHHHhhcCCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcHHH
Q 010357 40 EAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTREL 105 (512)
Q Consensus 40 ~~~~~~Q~~~~~~~~~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L 105 (512)
.-.+..|+.++.++++..-+++.||.|||||+.++..+++.+.. +.-.++++.-|..+.
T Consensus 3 ~p~~~~Q~~~~~al~~~~~v~~~G~AGTGKT~LA~a~Al~~v~~-------g~~~kiii~Rp~v~~ 61 (205)
T PF02562_consen 3 KPKNEEQKFALDALLNNDLVIVNGPAGTGKTFLALAAALELVKE-------GEYDKIIITRPPVEA 61 (205)
T ss_dssp ---SHHHHHHHHHHHH-SEEEEE--TTSSTTHHHHHHHHHHHHT-------TS-SEEEEEE-S--T
T ss_pred cCCCHHHHHHHHHHHhCCeEEEECCCCCcHHHHHHHHHHHHHHh-------CCCcEEEEEecCCCC
Confidence 34678899999999988888999999999999999999998876 345678888887653
No 177
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=98.54 E-value=4.3e-07 Score=82.94 Aligned_cols=73 Identities=29% Similarity=0.363 Sum_probs=51.4
Q ss_pred CcHHHHHHHHHhhcCCC-EEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHH
Q 010357 42 PTKVQAQAIPVILSGRH-VLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHK 115 (512)
Q Consensus 42 ~~~~Q~~~~~~~~~~~~-~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~ 115 (512)
+.+.|.+|+..+++... .+|+||+|+|||.+....+...+.... ......+.++|+++|+...+.+..+.+..
T Consensus 2 ln~~Q~~Ai~~~~~~~~~~~i~GpPGTGKT~~l~~~i~~~~~~~~-~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 2 LNESQREAIQSALSSNGITLIQGPPGTGKTTTLASIIAQLLQRFK-SRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp --HHHHHHHHHHCTSSE-EEEE-STTSSHHHHHHHHHHHH--------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHcCCCCEEEECCCCCChHHHHHHHHHHhccchh-hhhhhccccceeecCCchhHHHHHHHHHh
Confidence 67899999999998887 899999999999766555544421100 00113477899999999999999888877
No 178
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=98.54 E-value=0.00011 Score=73.15 Aligned_cols=126 Identities=15% Similarity=0.202 Sum_probs=74.3
Q ss_pred HHHHHHHHHhhhccccCceEEEEeecchhhhhHHHhhhhhcCCCCCCChhHHHhhhhccceeeecCCCCHHHHHHHHHhh
Q 010357 303 LAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAF 382 (512)
Q Consensus 303 ~~~l~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~l~g~~~~~~r~~~~~~f 382 (512)
+..+-..+..+...- ++.+++|.++.+....+...+.+.+. +..+....+++. -..-+ -+.+++.+
T Consensus 614 l~~l~~~~~nL~~~V-PgGvV~FfPSy~yL~~v~k~w~~~gi---------l~ri~~kK~vF~-E~k~~---~~dvl~~Y 679 (821)
T KOG1133|consen 614 IKDLGSSISNLSNAV-PGGVVCFFPSYAYLGQVRKRWEQNGI---------LARIVGKKKVFY-EPKDT---VEDVLEGY 679 (821)
T ss_pred HHHHHHHHHHHHhhC-CCcEEEEeccHHHHHHHHHHHHhcch---------HHHhhccchhhc-cCccc---HHHHHHHH
Confidence 334444444444333 48999999999988888887775421 111111223332 22211 34455555
Q ss_pred h----cCCCcEEEee--cccccCCCCCC--CcEEEEeCCCCC------------------------hh--------HHHH
Q 010357 383 K----TEKKALLLST--DVAARGLDFPK--VKCIIQYDSAGE------------------------AT--------EYVH 422 (512)
Q Consensus 383 ~----~~~~~vLvaT--~~~~~Gldip~--~~~VI~~~~p~s------------------------~~--------~~~Q 422 (512)
. .|.-.+|+|. --+++|||+.+ ++.||..+.|.. -+ ..-|
T Consensus 680 a~a~~~g~GaiLlaVVGGKlSEGINF~D~LgRaVvvVGlPyPN~~s~EL~er~k~l~~k~~~~gagke~yEnlCMkAVNQ 759 (821)
T KOG1133|consen 680 AEAAERGRGAILLAVVGGKLSEGINFSDDLGRAVVVVGLPYPNIQSVELQERMKHLDGKLPTPGAGKELYENLCMKAVNQ 759 (821)
T ss_pred HHHhhcCCCeEEEEEeccccccccccccccccEEEEeecCCCCCCCHHHHHHHHHhhhccCCCCchHHHHHHHHHHHHHH
Confidence 4 3445677775 56899999975 677887776631 11 1248
Q ss_pred hhhhcccCCCCccEEEecCc
Q 010357 423 RVGRTARLGERGDSLLFLQP 442 (512)
Q Consensus 423 ~~GRagR~g~~g~~~~~~~~ 442 (512)
.+|||-|+.+.=-++++++.
T Consensus 760 sIGRAIRH~~DYA~i~LlD~ 779 (821)
T KOG1133|consen 760 SIGRAIRHRKDYASIYLLDK 779 (821)
T ss_pred HHHHHHhhhccceeEEEehh
Confidence 88999998666556666553
No 179
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=98.47 E-value=1.5e-06 Score=78.93 Aligned_cols=157 Identities=17% Similarity=0.108 Sum_probs=101.2
Q ss_pred CCcHHHHHHHHHhhc----------CCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcHHHHHHHH
Q 010357 41 APTKVQAQAIPVILS----------GRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVY 110 (512)
Q Consensus 41 ~~~~~Q~~~~~~~~~----------~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~ 110 (512)
.++..|.+++-.+.+ +..+++-..||.||--...-.+++.+.+ ...+.|+++.+-.|..+..
T Consensus 37 ~LS~~QLEaV~yA~q~h~~~Lp~~~R~Gf~lGDGtGvGKGR~iAgiI~~n~l~--------Gr~r~vwvS~s~dL~~Da~ 108 (303)
T PF13872_consen 37 LLSALQLEAVIYACQRHEQILPGGSRAGFFLGDGTGVGKGRQIAGIILENWLR--------GRKRAVWVSVSNDLKYDAE 108 (303)
T ss_pred cccHHHHHHHHHHHHHHHhhcccccCcEEEeccCCCcCccchhHHHHHHHHHc--------CCCceEEEECChhhhhHHH
Confidence 489999999866542 3457889999999998888888888776 1335999999999999999
Q ss_pred HHHHHHHhhcCCcceEEEeCCCchHHHHHHHcCCCCEEEeCChHHHHHHhhcC---CC------c--CCceeEEEEcchh
Q 010357 111 EILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTS---SF------L--HTNLRWIIFDEAD 179 (512)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~---~~------~--~~~~~~lV~DEah 179 (512)
+.+..+.... +.+..+.. .... ....-.-.|+++|+..|........ .. . -..=.+|||||||
T Consensus 109 RDl~DIG~~~--i~v~~l~~-~~~~---~~~~~~~GvlF~TYs~L~~~~~~~~~~~sRl~ql~~W~g~dfdgvivfDEcH 182 (303)
T PF13872_consen 109 RDLRDIGADN--IPVHPLNK-FKYG---DIIRLKEGVLFSTYSTLISESQSGGKYRSRLDQLVDWCGEDFDGVIVFDECH 182 (303)
T ss_pred HHHHHhCCCc--ccceechh-hccC---cCCCCCCCccchhHHHHHhHHhccCCccchHHHHHHHHhcCCCceEEeccch
Confidence 9999886431 11111111 0000 0011234699999998876543210 00 0 0112489999999
Q ss_pred HHHhcCc--------hHHHHHHHHHhccCCCCCCCCCCcccccceeEEEEEEecch
Q 010357 180 RILELGF--------GKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNE 227 (512)
Q Consensus 180 ~l~~~~~--------~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~ 227 (512)
...+..- +..+..+-..+| ..+++.+|||-..
T Consensus 183 ~akn~~~~~~~~sk~g~avl~LQ~~LP----------------~ARvvY~SATgas 222 (303)
T PF13872_consen 183 KAKNLSSGSKKPSKTGIAVLELQNRLP----------------NARVVYASATGAS 222 (303)
T ss_pred hcCCCCccCccccHHHHHHHHHHHhCC----------------CCcEEEecccccC
Confidence 9766532 133444444454 6789999999654
No 180
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=98.41 E-value=9.8e-07 Score=75.31 Aligned_cols=108 Identities=21% Similarity=0.342 Sum_probs=73.3
Q ss_pred cCceEEEEeecchhhhhHHHhhhhhcCCCCCCChhHHHhhhhccceeeecCCCCHHHHHHHHHhhhcCCCcEEEeec--c
Q 010357 318 VSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTD--V 395 (512)
Q Consensus 318 ~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~l~g~~~~~~r~~~~~~f~~~~~~vLvaT~--~ 395 (512)
.++.++||++|....+.+.+.+....... +..++. . +...+..+++.|++++..||+|+. .
T Consensus 8 ~~g~~lv~f~Sy~~l~~~~~~~~~~~~~~-------------~~~v~~-q---~~~~~~~~l~~~~~~~~~il~~v~~g~ 70 (167)
T PF13307_consen 8 VPGGVLVFFPSYRRLEKVYERLKERLEEK-------------GIPVFV-Q---GSKSRDELLEEFKRGEGAILLAVAGGS 70 (167)
T ss_dssp CSSEEEEEESSHHHHHHHHTT-TSS-E-E-------------TSCEEE-S---TCCHHHHHHHHHCCSSSEEEEEETTSC
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHhhcccc-------------cceeee-c---CcchHHHHHHHHHhccCeEEEEEeccc
Confidence 35899999999999999999987752110 222332 2 366889999999999999999999 9
Q ss_pred cccCCCCCC--CcEEEEeCCCCC-h-----------------------------hHHHHhhhhcccCCCCccEEEecCc
Q 010357 396 AARGLDFPK--VKCIIQYDSAGE-A-----------------------------TEYVHRVGRTARLGERGDSLLFLQP 442 (512)
Q Consensus 396 ~~~Gldip~--~~~VI~~~~p~s-~-----------------------------~~~~Q~~GRagR~g~~g~~~~~~~~ 442 (512)
+.+|+|+|+ ++.||..+.|.. + ....|.+||+-|....--+++++++
T Consensus 71 ~~EGiD~~~~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~Qa~GR~iR~~~D~g~i~llD~ 149 (167)
T PF13307_consen 71 FSEGIDFPGDLLRAVIIVGLPFPPPSDPLVQAKREYLDKQGKNPFRDWYLPPAIRKLKQAIGRLIRSEDDYGVIILLDS 149 (167)
T ss_dssp CGSSS--ECESEEEEEEES-----TTCHHHHHHHHHHHHCCTTCHHHHTHHHHHHHHHHHHHCC--STT-EEEEEEESG
T ss_pred EEEeecCCCchhheeeecCCCCCCCCCHHHHHHHHHHHHHhccchhhHhhHHHHHHHhhhcCcceeccCCcEEEEEEcC
Confidence 999999996 778999887741 1 1226889999998665445555554
No 181
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=98.40 E-value=4.7e-06 Score=73.16 Aligned_cols=63 Identities=25% Similarity=0.361 Sum_probs=44.8
Q ss_pred CCcHHHHHHHHHhhcCC--CEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcHHHHHHHHHH
Q 010357 41 APTKVQAQAIPVILSGR--HVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEI 112 (512)
Q Consensus 41 ~~~~~Q~~~~~~~~~~~--~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~ 112 (512)
++++-|++++..++.+. -.+++||.|+|||.+... +...+.. .+.++++++||...+....+.
T Consensus 1 ~L~~~Q~~a~~~~l~~~~~~~~l~G~aGtGKT~~l~~-~~~~~~~--------~g~~v~~~apT~~Aa~~L~~~ 65 (196)
T PF13604_consen 1 TLNEEQREAVRAILTSGDRVSVLQGPAGTGKTTLLKA-LAEALEA--------AGKRVIGLAPTNKAAKELREK 65 (196)
T ss_dssp -S-HHHHHHHHHHHHCTCSEEEEEESTTSTHHHHHHH-HHHHHHH--------TT--EEEEESSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCeEEEEEECCCCCHHHHHHH-HHHHHHh--------CCCeEEEECCcHHHHHHHHHh
Confidence 47899999999987443 467889999999976443 4455544 257799999999887776554
No 182
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=98.37 E-value=1e-06 Score=90.22 Aligned_cols=118 Identities=17% Similarity=0.214 Sum_probs=93.8
Q ss_pred ceEEEEeecchhhhhHHHhhhhhcCCCCCCChhHHHhhhhccceeeecCCCCHHHHHHHHHhhhcCCC--cEEEeecccc
Q 010357 320 QKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKK--ALLLSTDVAA 397 (512)
Q Consensus 320 ~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~l~g~~~~~~r~~~~~~f~~~~~--~vLvaT~~~~ 397 (512)
.+++||+.....+..+...+... +.....+.|.|+...|.+.+..|..+.. -.+++..+..
T Consensus 540 ~kiiifsq~~~~l~l~~~~l~~~-----------------~~~~~~~~g~~~~~~r~~s~~~~~~~~~~~vll~Slkag~ 602 (674)
T KOG1001|consen 540 PKIVIFSQLIWGLALVCLRLFFK-----------------GFVFLRYDGEMLMKIRTKSFTDFPCDPLVTALLMSLKAGK 602 (674)
T ss_pred CceeeehhHHHHHHHhhhhhhhc-----------------ccccchhhhhhHHHHHHhhhcccccCccHHHHHHHHHHhh
Confidence 48899988888777777666644 7778888999999999999999996542 2577889999
Q ss_pred cCCCCCCCcEEEEeCCCCChhHHHHhhhhcccCCCCccEEEe---cCccchhHHHHHHHc
Q 010357 398 RGLDFPKVKCIIQYDSAGEATEYVHRVGRTARLGERGDSLLF---LQPVEMDYLQDLEKH 454 (512)
Q Consensus 398 ~Gldip~~~~VI~~~~p~s~~~~~Q~~GRagR~g~~g~~~~~---~~~~~~~~~~~l~~~ 454 (512)
.|+|+..+.+|+..++=+|+..--|.+-|+.|.|+...+.+. +-..-.+.+-.+++.
T Consensus 603 ~glnlt~a~~v~~~d~~wnp~~eeQaidR~hrigq~k~v~v~r~~i~dtveer~l~iq~~ 662 (674)
T KOG1001|consen 603 VGLNLTAASHVLLMDPWWNPAVEEQAIDRAHRIGQTKPVKVSRFIIKDTVEERILKIQEK 662 (674)
T ss_pred hhhchhhhhHHHhhchhcChHHHHHHHHHHHHhcccceeeeeeehhhhccHHHHHHHHHH
Confidence 999999999999999999999999999999999987755442 222334555555543
No 183
>PRK10536 hypothetical protein; Provisional
Probab=98.28 E-value=2.4e-05 Score=70.02 Aligned_cols=61 Identities=21% Similarity=0.168 Sum_probs=46.1
Q ss_pred cCCCCCcHHHHHHHHHhhcCCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcHH
Q 010357 37 LGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRE 104 (512)
Q Consensus 37 ~~~~~~~~~Q~~~~~~~~~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~ 104 (512)
.++.-.+..|...+..+.++..+++.||+|+|||+.+...+.+.+.. +.-.++++.-|+..
T Consensus 55 ~~i~p~n~~Q~~~l~al~~~~lV~i~G~aGTGKT~La~a~a~~~l~~-------~~~~kIiI~RP~v~ 115 (262)
T PRK10536 55 SPILARNEAQAHYLKAIESKQLIFATGEAGCGKTWISAAKAAEALIH-------KDVDRIIVTRPVLQ 115 (262)
T ss_pred ccccCCCHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHhc-------CCeeEEEEeCCCCC
Confidence 35655677888888888888888999999999999998888876644 12344666666654
No 184
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=98.18 E-value=3.2e-05 Score=79.26 Aligned_cols=85 Identities=24% Similarity=0.211 Sum_probs=59.3
Q ss_pred HHHHHHHHhcCCC-CCcHHHHHHHHHhhcCCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcHHHH
Q 010357 28 TLCDQLRERLGFE-APTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELC 106 (512)
Q Consensus 28 ~~~~~l~~~~~~~-~~~~~Q~~~~~~~~~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~ 106 (512)
.+...+...|+.. ...++|+.|+...+.++-.++.|++|+|||.+....+........ .....+++++||..-+
T Consensus 138 ~~~~~l~~lf~~~~~~~d~Qk~Av~~a~~~~~~vItGgpGTGKTt~v~~ll~~l~~~~~-----~~~~~i~l~APTgkAA 212 (615)
T PRK10875 138 LLRQTLDALFGPVTDEVDWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQLAD-----GERCRIRLAAPTGKAA 212 (615)
T ss_pred HHHHHHHHhcCcCCCCCHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHhcC-----CCCcEEEEECCcHHHH
Confidence 4455554444443 235899999999999888999999999999876544433322211 1235688999999988
Q ss_pred HHHHHHHHHHH
Q 010357 107 LQVYEILHKLL 117 (512)
Q Consensus 107 ~q~~~~~~~~~ 117 (512)
..+.+.+....
T Consensus 213 ~rL~e~~~~~~ 223 (615)
T PRK10875 213 ARLTESLGKAL 223 (615)
T ss_pred HHHHHHHHhhh
Confidence 88887766544
No 185
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=98.17 E-value=6.7e-06 Score=80.89 Aligned_cols=73 Identities=23% Similarity=0.242 Sum_probs=63.3
Q ss_pred hcCCCCCcHHHHHHHHHhhcCCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHH
Q 010357 36 RLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHK 115 (512)
Q Consensus 36 ~~~~~~~~~~Q~~~~~~~~~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~ 115 (512)
..++..+..-|..|+..++++.-.|++||+|+|||.+....+.+...+ .+..+|+++|+...+.|.++.+.+
T Consensus 405 ~~~lpkLN~SQ~~AV~~VL~rplsLIQGPPGTGKTvtsa~IVyhl~~~--------~~~~VLvcApSNiAVDqLaeKIh~ 476 (935)
T KOG1802|consen 405 VPNLPKLNASQSNAVKHVLQRPLSLIQGPPGTGKTVTSATIVYHLARQ--------HAGPVLVCAPSNIAVDQLAEKIHK 476 (935)
T ss_pred CCCchhhchHHHHHHHHHHcCCceeeecCCCCCceehhHHHHHHHHHh--------cCCceEEEcccchhHHHHHHHHHh
Confidence 347778999999999999999899999999999999988877776655 356699999999999999988877
Q ss_pred H
Q 010357 116 L 116 (512)
Q Consensus 116 ~ 116 (512)
.
T Consensus 477 t 477 (935)
T KOG1802|consen 477 T 477 (935)
T ss_pred c
Confidence 5
No 186
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=98.14 E-value=9.9e-06 Score=79.27 Aligned_cols=65 Identities=20% Similarity=0.293 Sum_probs=55.4
Q ss_pred CCcHHHHHHHHHhhcCCC-EEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcHHHHHHHHHHHH
Q 010357 41 APTKVQAQAIPVILSGRH-VLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILH 114 (512)
Q Consensus 41 ~~~~~Q~~~~~~~~~~~~-~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~ 114 (512)
++.+-|++|+....+.++ .+++||+|+|||.+....+.+.+.+ +.++|+++||..-+..+.+.+.
T Consensus 185 ~ln~SQk~Av~~~~~~k~l~~I~GPPGTGKT~TlvEiI~qlvk~---------~k~VLVcaPSn~AVdNiverl~ 250 (649)
T KOG1803|consen 185 NLNSSQKAAVSFAINNKDLLIIHGPPGTGKTRTLVEIISQLVKQ---------KKRVLVCAPSNVAVDNIVERLT 250 (649)
T ss_pred cccHHHHHHHHHHhccCCceEeeCCCCCCceeeHHHHHHHHHHc---------CCeEEEEcCchHHHHHHHHHhc
Confidence 478889999998887754 5789999999999998888888876 7889999999998888877544
No 187
>PF13245 AAA_19: Part of AAA domain
Probab=98.09 E-value=1.9e-05 Score=57.01 Aligned_cols=60 Identities=35% Similarity=0.450 Sum_probs=42.9
Q ss_pred HHHHhhcCCC-EEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcHHHHHHHHHHH
Q 010357 49 AIPVILSGRH-VLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEIL 113 (512)
Q Consensus 49 ~~~~~~~~~~-~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~ 113 (512)
++...+.+.+ ++|.+|+|||||.+.+-.+.+.+.... ..+.++++++|++..+.++.+.+
T Consensus 2 av~~al~~~~~~vv~g~pGtGKT~~~~~~i~~l~~~~~-----~~~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 2 AVRRALAGSPLFVVQGPPGTGKTTTLAARIAELLAARA-----DPGKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred HHHHHHhhCCeEEEECCCCCCHHHHHHHHHHHHHHHhc-----CCCCeEEEECCCHHHHHHHHHHH
Confidence 4443334334 556999999999887777776664311 11567999999999999888777
No 188
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=98.09 E-value=1.7e-05 Score=76.72 Aligned_cols=96 Identities=26% Similarity=0.245 Sum_probs=62.7
Q ss_pred CEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHHhhcCCcceEEEeCCCchHHH
Q 010357 58 HVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKE 137 (512)
Q Consensus 58 ~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 137 (512)
-++|.|..|||||++++-.+...... ..+..++++++..+|.......+..... .
T Consensus 3 v~~I~G~aGTGKTvla~~l~~~l~~~-------~~~~~~~~l~~n~~l~~~l~~~l~~~~~--~---------------- 57 (352)
T PF09848_consen 3 VILITGGAGTGKTVLALNLAKELQNS-------EEGKKVLYLCGNHPLRNKLREQLAKKYN--P---------------- 57 (352)
T ss_pred EEEEEecCCcCHHHHHHHHHHHhhcc-------ccCCceEEEEecchHHHHHHHHHhhhcc--c----------------
Confidence 46899999999999988777665111 2367799999999998888777765420 0
Q ss_pred HHHHcCCCCEEEeCChHHHHHHhhcCCCcCCceeEEEEcchhHHHhc
Q 010357 138 KARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILEL 184 (512)
Q Consensus 138 ~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lV~DEah~l~~~ 184 (512)
......+..+..+...+. ........+++|||||||++...
T Consensus 58 -----~~~~~~~~~~~~~i~~~~-~~~~~~~~~DviivDEAqrl~~~ 98 (352)
T PF09848_consen 58 -----KLKKSDFRKPTSFINNYS-ESDKEKNKYDVIIVDEAQRLRTK 98 (352)
T ss_pred -----chhhhhhhhhHHHHhhcc-cccccCCcCCEEEEehhHhhhhc
Confidence 001123333444443332 11122347899999999999873
No 189
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=98.06 E-value=7e-05 Score=76.64 Aligned_cols=134 Identities=21% Similarity=0.209 Sum_probs=78.6
Q ss_pred cHHHHHHHHHhhcCCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHHhhcCC
Q 010357 43 TKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHW 122 (512)
Q Consensus 43 ~~~Q~~~~~~~~~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~ 122 (512)
.++|+.|+..++.++-+++.|+.|+|||.+....+...... .+. ....++++.+||...+..+.+.+......+..
T Consensus 147 ~~~Qk~A~~~al~~~~~vitGgpGTGKTt~v~~ll~~l~~~-~~~---~~~~~I~l~APTGkAA~rL~e~~~~~~~~l~~ 222 (586)
T TIGR01447 147 QNWQKVAVALALKSNFSLITGGPGTGKTTTVARLLLALVKQ-SPK---QGKLRIALAAPTGKAAARLAESLRKAVKNLAA 222 (586)
T ss_pred cHHHHHHHHHHhhCCeEEEEcCCCCCHHHHHHHHHHHHHHh-ccc---cCCCcEEEECCcHHHHHHHHHHHHhhhccccc
Confidence 48999999999999899999999999998765444332222 110 01246999999998888777766554322110
Q ss_pred cceEEEeCCCchHHHHHHHcCCCCEEEeCChHHHHHHhhcCC-----CcCCceeEEEEcchhHHHhcCchHHHHHHHHHh
Q 010357 123 IVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSS-----FLHTNLRWIIFDEADRILELGFGKEIEEILDIL 197 (512)
Q Consensus 123 ~~~~~~~~g~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~-----~~~~~~~~lV~DEah~l~~~~~~~~~~~i~~~~ 197 (512)
. ..... ...+-..|-.+++........ .....+++||+|||-.+. ...+..++..+
T Consensus 223 ----------~-~~~~~----~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIiDEaSMvd----~~l~~~ll~al 283 (586)
T TIGR01447 223 ----------A-EALIA----ALPSEAVTIHRLLGIKPDTKRFRHHERNPLPLDVLVVDEASMVD----LPLMAKLLKAL 283 (586)
T ss_pred ----------c-hhhhh----ccccccchhhhhhcccCCcchhhhcccCCCcccEEEEcccccCC----HHHHHHHHHhc
Confidence 0 01100 111223444444432211000 112257899999999643 24566667666
Q ss_pred cc
Q 010357 198 GS 199 (512)
Q Consensus 198 ~~ 199 (512)
+.
T Consensus 284 ~~ 285 (586)
T TIGR01447 284 PP 285 (586)
T ss_pred CC
Confidence 54
No 190
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=98.06 E-value=2.4e-05 Score=79.76 Aligned_cols=81 Identities=21% Similarity=0.227 Sum_probs=56.4
Q ss_pred hcCCCCCcHHHHHHHHHhh----cCCCEEEEccCCChHhHHHHHHHHHHHhhcCCC---------C-------CC-----
Q 010357 36 RLGFEAPTKVQAQAIPVIL----SGRHVLVNAATGTGKTVAYLAPIINHLQSYSPR---------I-------DR----- 90 (512)
Q Consensus 36 ~~~~~~~~~~Q~~~~~~~~----~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~---------~-------~~----- 90 (512)
.|+|. |++-|......++ ...+.++-.|||+|||++.+...+....+...+ . ..
T Consensus 17 ~fP~q-pY~~Q~a~M~rvl~~L~~~q~~llESPTGTGKSLsLLCS~LAW~q~~k~~~~~~~~s~~~~~~~p~~~s~~~g~ 95 (945)
T KOG1132|consen 17 EFPFQ-PYPTQLAFMTRVLSCLDRKQNGLLESPTGTGKSLSLLCSTLAWQQHLKSRKPKGKISERKAGFIPTQPSDSGGE 95 (945)
T ss_pred eccCC-cchHHHHHHHHHHHHHHHhhhhhccCCCCCCccHHHHHHHHHHHHHhhccccccchhhhhccccCCCCccCCCC
Confidence 46776 9999998776655 557899999999999998765555443332200 0 00
Q ss_pred ------------CCCceEEEEcCcHHHHHHHHHHHHHHH
Q 010357 91 ------------SSGTFALVLVPTRELCLQVYEILHKLL 117 (512)
Q Consensus 91 ------------~~~~~~lil~Pt~~L~~q~~~~~~~~~ 117 (512)
-..+++.|-.-|..-..|+.+++....
T Consensus 96 ~s~e~~e~~~~~~~ipkIyyaSRTHsQltQvvrElrrT~ 134 (945)
T KOG1132|consen 96 KSEEAGEPIACYTGIPKIYYASRTHSQLTQVVRELRRTG 134 (945)
T ss_pred chhhhcCccccccCCceEEEecchHHHHHHHHHHHhhcC
Confidence 024668888888888888888887764
No 191
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=98.04 E-value=5.4e-05 Score=79.79 Aligned_cols=71 Identities=21% Similarity=0.218 Sum_probs=51.2
Q ss_pred HHHHhcCCCCCcHHHHHHHHHhhcCCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcHHHHHHHH
Q 010357 32 QLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVY 110 (512)
Q Consensus 32 ~l~~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~ 110 (512)
.+.+..++. +++.|++|+..+.+++-+++.|+.|+|||.+... ++..+.... ....+++++||...+..+.
T Consensus 315 ~~~~~~~~~-l~~~Q~~Ai~~~~~~~~~iitGgpGTGKTt~l~~-i~~~~~~~~------~~~~v~l~ApTg~AA~~L~ 385 (720)
T TIGR01448 315 EVEKKLRKG-LSEEQKQALDTAIQHKVVILTGGPGTGKTTITRA-IIELAEELG------GLLPVGLAAPTGRAAKRLG 385 (720)
T ss_pred HHHHhcCCC-CCHHHHHHHHHHHhCCeEEEECCCCCCHHHHHHH-HHHHHHHcC------CCceEEEEeCchHHHHHHH
Confidence 344555765 9999999999999888899999999999976543 333333311 0156888999988776443
No 192
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=97.92 E-value=0.00051 Score=60.41 Aligned_cols=128 Identities=18% Similarity=0.231 Sum_probs=84.1
Q ss_pred CCcccCCCCHHHHHHHHHhcCCCCCcHHHHHHHHHhhc---CCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCc
Q 010357 18 CSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILS---GRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGT 94 (512)
Q Consensus 18 ~~~~~~~l~~~~~~~l~~~~~~~~~~~~Q~~~~~~~~~---~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~ 94 (512)
.+|.....+.+++-.+.. +|- .|+.|.+....+.+ |+|.+.++-+|.|||-+. +|++..+... ...
T Consensus 3 ~~w~p~~~P~wLl~E~e~--~il-iR~~Q~~ia~~mi~~~~~~n~v~QlnMGeGKTsVI-~Pmla~~LAd-------g~~ 71 (229)
T PF12340_consen 3 RNWDPMEYPDWLLFEIES--NIL-IRPVQVEIAREMISPPSGKNSVMQLNMGEGKTSVI-VPMLALALAD-------GSR 71 (229)
T ss_pred CCCCchhChHHHHHHHHc--Cce-eeHHHHHHHHHHhCCCCCCCeEeeecccCCccchH-HHHHHHHHcC-------CCc
Confidence 367888888999988843 777 99999999988774 579999999999999775 4444444431 234
Q ss_pred eEEEEcCcHHHHHHHHHHHHHHHhhcCCcceEEEe----CCCch-H-------HHHHHHcCCCCEEEeCChHHHHHH
Q 010357 95 FALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVM----GGENR-S-------KEKARLRKGISILVATPGRLLDHL 159 (512)
Q Consensus 95 ~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~----~g~~~-~-------~~~~~~~~~~~Iiv~Tp~~l~~~l 159 (512)
.+.+++|. +|..|....+..-+... ....++. -.... . ...........|+++||+.++.+.
T Consensus 72 LvrviVpk-~Ll~q~~~~L~~~lg~l--~~r~i~~lpFsR~~~~~~~~~~~~~~l~~~~~~~~gill~~PEhilSf~ 145 (229)
T PF12340_consen 72 LVRVIVPK-ALLEQMRQMLRSRLGGL--LNRRIYHLPFSRSTPLTPETLEKIRQLLEECMRSGGILLATPEHILSFK 145 (229)
T ss_pred EEEEEcCH-HHHHHHHHHHHHHHHHH--hCCeeEEecccCCCCCCHHHHHHHHHHHHHHHHcCCEEEeChHHHHHHH
Confidence 46667776 89999998887665432 1111111 11111 1 111122345679999999886643
No 193
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.76 E-value=0.00057 Score=55.79 Aligned_cols=27 Identities=22% Similarity=0.228 Sum_probs=17.8
Q ss_pred cCCCEEEEccCCChHhHHHHHHHHHHH
Q 010357 55 SGRHVLVNAATGTGKTVAYLAPIINHL 81 (512)
Q Consensus 55 ~~~~~lv~~pTGsGKT~~~~~~~~~~~ 81 (512)
+++.+++.||+|+|||.+....+.+..
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~ 29 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLN 29 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhH
Confidence 345689999999999988766665543
No 194
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.76 E-value=3.6e-05 Score=75.15 Aligned_cols=116 Identities=16% Similarity=0.120 Sum_probs=65.9
Q ss_pred EEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHHhhcCCcceEEEeCCCchH----H
Q 010357 61 VNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRS----K 136 (512)
Q Consensus 61 v~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~g~~~~----~ 136 (512)
..+.||||||++.+..+++.+..-. ...|+.|....+.+.....+..-...--.....+..++.... .
T Consensus 2 f~matgsgkt~~ma~lil~~y~kgy--------r~flffvnq~nilekt~~nftd~~s~kylf~e~i~~~d~~i~ikkvn 73 (812)
T COG3421 2 FEMATGSGKTLVMAGLILECYKKGY--------RNFLFFVNQANILEKTKLNFTDSVSSKYLFSENININDENIEIKKVN 73 (812)
T ss_pred cccccCCChhhHHHHHHHHHHHhch--------hhEEEEecchhHHHHHHhhcccchhhhHhhhhhhhcCCceeeeeeec
Confidence 4678999999999999998876622 236777776666655544432221100001111122222211 0
Q ss_pred HHHHHcCCCCEEEeCChHHHHHHhhcCCC-----cCCcee-EEEEcchhHHHhc
Q 010357 137 EKARLRKGISILVATPGRLLDHLKHTSSF-----LHTNLR-WIIFDEADRILEL 184 (512)
Q Consensus 137 ~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~-----~~~~~~-~lV~DEah~l~~~ 184 (512)
....-...+.|.++|.+.|...+.+.+.. ++.+.. +.+-|||||+-..
T Consensus 74 ~fsehnd~iei~fttiq~l~~d~~~~ken~itledl~~~klvfl~deahhln~~ 127 (812)
T COG3421 74 NFSEHNDAIEIYFTTIQGLFSDFTRAKENAITLEDLKDQKLVFLADEAHHLNTE 127 (812)
T ss_pred ccCccCCceEEEEeehHHHHHHHHhhccccccHhhHhhCceEEEechhhhhhhh
Confidence 11123345689999999998877654322 233333 4567999997654
No 195
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=97.57 E-value=0.00027 Score=67.58 Aligned_cols=124 Identities=23% Similarity=0.204 Sum_probs=79.4
Q ss_pred CcHHHHHHHHHhhcCCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHHhhcC
Q 010357 42 PTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFH 121 (512)
Q Consensus 42 ~~~~Q~~~~~~~~~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~ 121 (512)
+++-|.+++.. ...+++|.|+.|||||.+.+.-+...+.... ....+++++++|+..+.++...+...+....
T Consensus 1 l~~eQ~~~i~~--~~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~-----~~~~~Il~lTft~~aa~e~~~ri~~~l~~~~ 73 (315)
T PF00580_consen 1 LTDEQRRIIRS--TEGPLLVNAGAGSGKTTTLLERIAYLLYEGG-----VPPERILVLTFTNAAAQEMRERIRELLEEEQ 73 (315)
T ss_dssp S-HHHHHHHHS---SSEEEEEE-TTSSHHHHHHHHHHHHHHTSS-----STGGGEEEEESSHHHHHHHHHHHHHHHHHCC
T ss_pred CCHHHHHHHhC--CCCCEEEEeCCCCCchHHHHHHHHHhhcccc-----CChHHheecccCHHHHHHHHHHHHHhcCccc
Confidence 46789999987 5569999999999999999888888777642 2356699999999999999999988765422
Q ss_pred CcceEEEeCCCchHHHHHHHcCCCCEEEeCChHHHHHHhhcCCCcC-CceeEEEEcchh
Q 010357 122 WIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLH-TNLRWIIFDEAD 179 (512)
Q Consensus 122 ~~~~~~~~~g~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~-~~~~~lV~DEah 179 (512)
... ...............+.|+|-..+...+-+...... -.-.+-++|+..
T Consensus 74 ~~~-------~~~~~~~~~~~~~~~~~i~T~hsf~~~ll~~~~~~~~~~~~~~i~~~~~ 125 (315)
T PF00580_consen 74 QES-------SDNERLRRQLSNIDRIYISTFHSFCYRLLREYGYEIGIDPNFEILDEEE 125 (315)
T ss_dssp HCC-------TT-HHHHHHHHHCTTSEEEEHHHHHHHHHHHHHGGTTSHTTTEEECHHH
T ss_pred ccc-------cccccccccccccchheeehhhhhhhhhhhhhhhhhhccccceeecchh
Confidence 100 011122222223356889998877554332111110 122456777777
No 196
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=97.53 E-value=0.0013 Score=69.72 Aligned_cols=63 Identities=14% Similarity=0.141 Sum_probs=46.9
Q ss_pred CCCCCcHHHHHHHHHhhcC-CCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcHHHHHHHH
Q 010357 38 GFEAPTKVQAQAIPVILSG-RHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVY 110 (512)
Q Consensus 38 ~~~~~~~~Q~~~~~~~~~~-~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~ 110 (512)
++. +++-|++|+..++.+ +-++|.|+.|+|||.+.-. +.+.+.. .+..+++++||...+..+.
T Consensus 350 ~~~-Ls~~Q~~Av~~i~~s~~~~il~G~aGTGKTtll~~-i~~~~~~--------~g~~V~~~ApTg~Aa~~L~ 413 (744)
T TIGR02768 350 HYR-LSEEQYEAVRHVTGSGDIAVVVGRAGTGKSTMLKA-AREAWEA--------AGYRVIGAALSGKAAEGLQ 413 (744)
T ss_pred cCC-CCHHHHHHHHHHhcCCCEEEEEecCCCCHHHHHHH-HHHHHHh--------CCCeEEEEeCcHHHHHHHH
Confidence 554 999999999998874 5678999999999977444 3333333 3677999999977665543
No 197
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=97.52 E-value=0.00032 Score=72.87 Aligned_cols=66 Identities=26% Similarity=0.298 Sum_probs=55.5
Q ss_pred CCcHHHHHHHHHhhcC-CCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHH
Q 010357 41 APTKVQAQAIPVILSG-RHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHK 115 (512)
Q Consensus 41 ~~~~~Q~~~~~~~~~~-~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~ 115 (512)
.+.+.|.+|+..++.. ..+++.||+|+|||.+....+.+.+.. +.++++++||...+.++.+.+..
T Consensus 157 ~ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~t~~~ii~~~~~~---------g~~VLv~a~sn~Avd~l~e~l~~ 223 (637)
T TIGR00376 157 NLNESQKEAVSFALSSKDLFLIHGPPGTGKTRTLVELIRQLVKR---------GLRVLVTAPSNIAVDNLLERLAL 223 (637)
T ss_pred CCCHHHHHHHHHHhcCCCeEEEEcCCCCCHHHHHHHHHHHHHHc---------CCCEEEEcCcHHHHHHHHHHHHh
Confidence 4789999999998876 578899999999998877766666544 56799999999999988888776
No 198
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=97.52 E-value=0.00056 Score=56.16 Aligned_cols=47 Identities=19% Similarity=0.302 Sum_probs=37.2
Q ss_pred CCCHHHHHHHHHhhhcCC-CcEEEeecccccCCCCCC--CcEEEEeCCCC
Q 010357 369 NMKQEDRRTTFGAFKTEK-KALLLSTDVAARGLDFPK--VKCIIQYDSAG 415 (512)
Q Consensus 369 ~~~~~~r~~~~~~f~~~~-~~vLvaT~~~~~Gldip~--~~~VI~~~~p~ 415 (512)
+.+..+...+++.|++.. ..||+++..+++|+|+|+ ++.||..+.|.
T Consensus 30 ~~~~~~~~~~l~~f~~~~~~~iL~~~~~~~EGiD~~g~~~r~vii~glPf 79 (141)
T smart00492 30 GEDGKETGKLLEKYVEACENAILLATARFSEGVDFPGDYLRAVIIDGLPF 79 (141)
T ss_pred CCChhHHHHHHHHHHHcCCCEEEEEccceecceecCCCCeeEEEEEecCC
Confidence 344556789999998765 379999988999999997 56788877663
No 199
>PRK06526 transposase; Provisional
Probab=97.51 E-value=0.00038 Score=63.52 Aligned_cols=31 Identities=26% Similarity=0.262 Sum_probs=24.2
Q ss_pred hhcCCCEEEEccCCChHhHHHHHHHHHHHhh
Q 010357 53 ILSGRHVLVNAATGTGKTVAYLAPIINHLQS 83 (512)
Q Consensus 53 ~~~~~~~lv~~pTGsGKT~~~~~~~~~~~~~ 83 (512)
+..+.++++.||+|+|||..+...+.+....
T Consensus 95 i~~~~nlll~Gp~GtGKThLa~al~~~a~~~ 125 (254)
T PRK06526 95 VTGKENVVFLGPPGTGKTHLAIGLGIRACQA 125 (254)
T ss_pred hhcCceEEEEeCCCCchHHHHHHHHHHHHHC
Confidence 4466799999999999998887766665543
No 200
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=97.46 E-value=0.00063 Score=66.06 Aligned_cols=59 Identities=25% Similarity=0.291 Sum_probs=44.2
Q ss_pred CcHHHHHHHHHh------hcCCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcHHHHHHH
Q 010357 42 PTKVQAQAIPVI------LSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQV 109 (512)
Q Consensus 42 ~~~~Q~~~~~~~------~~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~ 109 (512)
+++-|++++..+ .++.++++.|+-|+|||+.+-...... . ..+..+++++||...|..+
T Consensus 2 Ln~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~~~i~~~~--~-------~~~~~~~~~a~tg~AA~~i 66 (364)
T PF05970_consen 2 LNEEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKSFLIKAIIDYL--R-------SRGKKVLVTAPTGIAAFNI 66 (364)
T ss_pred CCHHHHHHHHHHHHHHHccCCcEEEEEcCCCCChhHHHHHHHHHh--c-------cccceEEEecchHHHHHhc
Confidence 567799998888 577899999999999997754433322 1 1366799999998766555
No 201
>KOG1131 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 5'-3' helicase subunit RAD3 [Transcription; Replication, recombination and repair]
Probab=97.43 E-value=0.0015 Score=63.01 Aligned_cols=76 Identities=22% Similarity=0.233 Sum_probs=52.5
Q ss_pred cCCCCCcHHHHHHHHHhh----cCCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcHHHHHHHHHH
Q 010357 37 LGFEAPTKVQAQAIPVIL----SGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEI 112 (512)
Q Consensus 37 ~~~~~~~~~Q~~~~~~~~----~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~ 112 (512)
|++...+|-|.+-...+. .+.+.++-+|+|+|||.+.+..+......++. ...+.+++.-|..-.+....+
T Consensus 12 FPY~~iYPEQ~~YM~elKrsLDakGh~llEMPSGTGKTvsLLSli~aYq~~~p~-----~~~KliYCSRTvpEieK~l~E 86 (755)
T KOG1131|consen 12 FPYDYIYPEQYEYMRELKRSLDAKGHCLLEMPSGTGKTVSLLSLIIAYQLHYPD-----EHRKLIYCSRTVPEIEKALEE 86 (755)
T ss_pred cCCcccCHHHHHHHHHHHHhhccCCcEEEECCCCCCcchHHHHHHHHHHHhCCc-----ccceEEEecCcchHHHHHHHH
Confidence 567777788876654433 45689999999999999987776666555432 245678887777666666566
Q ss_pred HHHHH
Q 010357 113 LHKLL 117 (512)
Q Consensus 113 ~~~~~ 117 (512)
++.+.
T Consensus 87 l~~l~ 91 (755)
T KOG1131|consen 87 LKRLM 91 (755)
T ss_pred HHHHH
Confidence 65554
No 202
>PRK04296 thymidine kinase; Provisional
Probab=97.43 E-value=0.00039 Score=60.73 Aligned_cols=36 Identities=25% Similarity=0.333 Sum_probs=27.1
Q ss_pred CEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCc
Q 010357 58 HVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPT 102 (512)
Q Consensus 58 ~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt 102 (512)
-.++.||+|+|||..++-.+...... +.+++++-|.
T Consensus 4 i~litG~~GsGKTT~~l~~~~~~~~~---------g~~v~i~k~~ 39 (190)
T PRK04296 4 LEFIYGAMNSGKSTELLQRAYNYEER---------GMKVLVFKPA 39 (190)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHc---------CCeEEEEecc
Confidence 46889999999998877766665544 6678888663
No 203
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=97.42 E-value=0.00073 Score=62.63 Aligned_cols=66 Identities=26% Similarity=0.295 Sum_probs=44.6
Q ss_pred HhcCCCCCcHH-HHHHHHHhhcCC--CEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcHHHHH
Q 010357 35 ERLGFEAPTKV-QAQAIPVILSGR--HVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCL 107 (512)
Q Consensus 35 ~~~~~~~~~~~-Q~~~~~~~~~~~--~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~ 107 (512)
+.+|+. |+.. |.-|+..++... -+.+.++.|||||+.++.+.+++..... .-.++++-=|+..+.+
T Consensus 222 ~vwGi~-prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~------~y~KiiVtRp~vpvG~ 290 (436)
T COG1875 222 EVWGIR-PRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLERK------RYRKIIVTRPTVPVGE 290 (436)
T ss_pred hhhccC-cccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHHHh------hhceEEEecCCcCccc
Confidence 567887 5555 555667666542 3678999999999999888877765422 2344677667666543
No 204
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.42 E-value=0.0016 Score=62.45 Aligned_cols=64 Identities=16% Similarity=0.141 Sum_probs=41.3
Q ss_pred CcccCCCCHHHHHHHHHhcCCC-------CCcHHHHHHHHHh-----------hcCCCEEEEccCCChHhHHHHHHHHHH
Q 010357 19 SFSSLGLHSTLCDQLRERLGFE-------APTKVQAQAIPVI-----------LSGRHVLVNAATGTGKTVAYLAPIINH 80 (512)
Q Consensus 19 ~~~~~~l~~~~~~~l~~~~~~~-------~~~~~Q~~~~~~~-----------~~~~~~lv~~pTGsGKT~~~~~~~~~~ 80 (512)
.+...|+++.+.+.+.+.++-. ....|....+... -.+..+++.||||+|||.+....+...
T Consensus 82 ~L~~~g~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~g~ii~lvGptGvGKTTtiakLA~~~ 161 (374)
T PRK14722 82 YLFAAGFSAQLVRMIVDNLPEGEGYDTLDAAADWAQSVLAANLPVLDSEDALMERGGVFALMGPTGVGKTTTTAKLAARC 161 (374)
T ss_pred HHHHCCCCHHHHHHHHHhhhhhcccCCHHHHHHHHHHHHHhcchhhcCCCccccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4566788888888887755321 1133444443221 124578999999999999987777665
Q ss_pred Hh
Q 010357 81 LQ 82 (512)
Q Consensus 81 ~~ 82 (512)
..
T Consensus 162 ~~ 163 (374)
T PRK14722 162 VM 163 (374)
T ss_pred HH
Confidence 43
No 205
>PRK08181 transposase; Validated
Probab=97.41 E-value=0.0025 Score=58.51 Aligned_cols=57 Identities=25% Similarity=0.289 Sum_probs=36.8
Q ss_pred cHHHHHHHH----HhhcCCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcHHHHHHH
Q 010357 43 TKVQAQAIP----VILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQV 109 (512)
Q Consensus 43 ~~~Q~~~~~----~~~~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~ 109 (512)
...|..++. .+-.++++++.||+|+|||..+...+.+.... +..++++ +...|..+.
T Consensus 89 ~~~~~~~L~~~~~~~~~~~nlll~Gp~GtGKTHLa~Aia~~a~~~---------g~~v~f~-~~~~L~~~l 149 (269)
T PRK08181 89 SKAQVMAIAAGDSWLAKGANLLLFGPPGGGKSHLAAAIGLALIEN---------GWRVLFT-RTTDLVQKL 149 (269)
T ss_pred CHHHHHHHHHHHHHHhcCceEEEEecCCCcHHHHHHHHHHHHHHc---------CCceeee-eHHHHHHHH
Confidence 355555553 23467899999999999998877666555433 4556555 444555544
No 206
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=97.40 E-value=0.0014 Score=70.67 Aligned_cols=63 Identities=21% Similarity=0.183 Sum_probs=47.8
Q ss_pred cCCCCCcHHHHHHHHHhhcCCC-EEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcHHHHHHH
Q 010357 37 LGFEAPTKVQAQAIPVILSGRH-VLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQV 109 (512)
Q Consensus 37 ~~~~~~~~~Q~~~~~~~~~~~~-~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~ 109 (512)
.|+. +++-|++|+..++++++ ++|.|+.|+|||.+ +-.+...+.. .+.+++.++||-..+...
T Consensus 343 ~g~~-Ls~eQr~Av~~il~s~~v~vv~G~AGTGKTT~-l~~~~~~~e~--------~G~~V~~~ApTGkAA~~L 406 (988)
T PRK13889 343 RGLV-LSGEQADALAHVTDGRDLGVVVGYAGTGKSAM-LGVAREAWEA--------AGYEVRGAALSGIAAENL 406 (988)
T ss_pred cCCC-CCHHHHHHHHHHhcCCCeEEEEeCCCCCHHHH-HHHHHHHHHH--------cCCeEEEecCcHHHHHHH
Confidence 3665 99999999999998654 68999999999986 3444444433 367799999997765544
No 207
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=97.39 E-value=0.00079 Score=55.41 Aligned_cols=69 Identities=19% Similarity=0.332 Sum_probs=49.5
Q ss_pred HHHHHHHHhhhcCCC---cEEEeecc--cccCCCCCC--CcEEEEeCCCCC-----------------------------
Q 010357 373 EDRRTTFGAFKTEKK---ALLLSTDV--AARGLDFPK--VKCIIQYDSAGE----------------------------- 416 (512)
Q Consensus 373 ~~r~~~~~~f~~~~~---~vLvaT~~--~~~Gldip~--~~~VI~~~~p~s----------------------------- 416 (512)
.+...+++.|++... .||+++.. +++|+|+|+ ++.||..+.|..
T Consensus 31 ~~~~~~l~~f~~~~~~~g~iL~~v~~G~~~EGiD~~g~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (142)
T smart00491 31 GETEELLEKYSAACEARGALLLAVARGKVSEGIDFPDDLGRAVIIVGIPFPNPDSPILRARLEYLDEKGGIRPFDEVYLF 110 (142)
T ss_pred chHHHHHHHHHHhcCCCCEEEEEEeCCeeecceecCCCccEEEEEEecCCCCCCCHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 355788999997654 69999987 999999997 678888886631
Q ss_pred --hhHHHHhhhhcccCCCCccEEEecC
Q 010357 417 --ATEYVHRVGRTARLGERGDSLLFLQ 441 (512)
Q Consensus 417 --~~~~~Q~~GRagR~g~~g~~~~~~~ 441 (512)
.....|.+||+-|....--++++++
T Consensus 111 ~a~~~~~Qa~GR~iR~~~D~g~i~l~D 137 (142)
T smart00491 111 DAMRALAQAIGRAIRHKNDYGVVVLLD 137 (142)
T ss_pred HHHHHHHHHhCccccCccceEEEEEEe
Confidence 1123688899999865544455444
No 208
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.30 E-value=0.0034 Score=52.12 Aligned_cols=24 Identities=29% Similarity=0.311 Sum_probs=18.6
Q ss_pred CCCEEEEccCCChHhHHHHHHHHH
Q 010357 56 GRHVLVNAATGTGKTVAYLAPIIN 79 (512)
Q Consensus 56 ~~~~lv~~pTGsGKT~~~~~~~~~ 79 (512)
++.+++.||+|+|||..+...+..
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i~~~ 42 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAIANE 42 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 678999999999999765554433
No 209
>PRK06921 hypothetical protein; Provisional
Probab=97.20 E-value=0.0052 Score=56.66 Aligned_cols=26 Identities=19% Similarity=0.218 Sum_probs=20.3
Q ss_pred CCCEEEEccCCChHhHHHHHHHHHHH
Q 010357 56 GRHVLVNAATGTGKTVAYLAPIINHL 81 (512)
Q Consensus 56 ~~~~lv~~pTGsGKT~~~~~~~~~~~ 81 (512)
+.++++.||+|+|||..+...+.+..
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~ 142 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELM 142 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHh
Confidence 56799999999999987765554443
No 210
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.19 E-value=0.0048 Score=55.82 Aligned_cols=26 Identities=23% Similarity=0.174 Sum_probs=20.4
Q ss_pred CCEEEEccCCChHhHHHHHHHHHHHh
Q 010357 57 RHVLVNAATGTGKTVAYLAPIINHLQ 82 (512)
Q Consensus 57 ~~~lv~~pTGsGKT~~~~~~~~~~~~ 82 (512)
..+++.|++|+|||..+...+.+...
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l~~ 125 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNELLL 125 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHh
Confidence 46899999999999887766655543
No 211
>PRK14974 cell division protein FtsY; Provisional
Probab=97.16 E-value=0.0043 Score=58.90 Aligned_cols=128 Identities=16% Similarity=0.173 Sum_probs=66.3
Q ss_pred CEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCc---HHHHHHHHHHHHHHHhhcCCcceEEEeCCCch
Q 010357 58 HVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPT---RELCLQVYEILHKLLHRFHWIVPGYVMGGENR 134 (512)
Q Consensus 58 ~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt---~~L~~q~~~~~~~~~~~~~~~~~~~~~~g~~~ 134 (512)
-+++.|++|+|||.+....+... .. .+.+++++..- .....|+......+ +........++ +.
T Consensus 142 vi~~~G~~GvGKTTtiakLA~~l-~~--------~g~~V~li~~Dt~R~~a~eqL~~~a~~l----gv~v~~~~~g~-dp 207 (336)
T PRK14974 142 VIVFVGVNGTGKTTTIAKLAYYL-KK--------NGFSVVIAAGDTFRAGAIEQLEEHAERL----GVKVIKHKYGA-DP 207 (336)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH-HH--------cCCeEEEecCCcCcHHHHHHHHHHHHHc----CCceecccCCC-CH
Confidence 36789999999998876666443 22 24456555432 23444544433332 32111111111 11
Q ss_pred HHHHHHHcCCCCEEEeCChHHHHHHhhcCCCcCCceeEEEEcchhHHH-hcCchHHHHHHHHHhccCCCCCCCCCCcccc
Q 010357 135 SKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRIL-ELGFGKEIEEILDILGSRNIGSIGEGNEVSN 213 (512)
Q Consensus 135 ~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lV~DEah~l~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 213 (512)
.. .+.+.+.... ..+.++|++|.++++. +......+..+.....+
T Consensus 208 ~~-----------------v~~~ai~~~~---~~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~p-------------- 253 (336)
T PRK14974 208 AA-----------------VAYDAIEHAK---ARGIDVVLIDTAGRMHTDANLMDELKKIVRVTKP-------------- 253 (336)
T ss_pred HH-----------------HHHHHHHHHH---hCCCCEEEEECCCccCCcHHHHHHHHHHHHhhCC--------------
Confidence 00 1122222111 1256899999999864 22344555555544433
Q ss_pred cceeEEEEEEecchhhHHHHH
Q 010357 214 VKRQNLLLSATLNEKVNHLAK 234 (512)
Q Consensus 214 ~~~~~i~~SAT~~~~~~~~~~ 234 (512)
...+++++||..+.......
T Consensus 254 -d~~iLVl~a~~g~d~~~~a~ 273 (336)
T PRK14974 254 -DLVIFVGDALAGNDAVEQAR 273 (336)
T ss_pred -ceEEEeeccccchhHHHHHH
Confidence 66788889987655444333
No 212
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=97.12 E-value=0.0024 Score=66.39 Aligned_cols=125 Identities=21% Similarity=0.136 Sum_probs=78.9
Q ss_pred CCCcHHHHHHHHHhhcCCC-EEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHHh
Q 010357 40 EAPTKVQAQAIPVILSGRH-VLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLH 118 (512)
Q Consensus 40 ~~~~~~Q~~~~~~~~~~~~-~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~ 118 (512)
..+..-|++|+..++..++ .++.|-+|+|||.+....+.-.+.. |.++|..+-|...+..+--.++....
T Consensus 668 ~~LN~dQr~A~~k~L~aedy~LI~GMPGTGKTTtI~~LIkiL~~~---------gkkVLLtsyThsAVDNILiKL~~~~i 738 (1100)
T KOG1805|consen 668 LRLNNDQRQALLKALAAEDYALILGMPGTGKTTTISLLIKILVAL---------GKKVLLTSYTHSAVDNILIKLKGFGI 738 (1100)
T ss_pred hhcCHHHHHHHHHHHhccchheeecCCCCCchhhHHHHHHHHHHc---------CCeEEEEehhhHHHHHHHHHHhccCc
Confidence 3689999999988886654 6889999999997766655444444 78899999888777666655555421
Q ss_pred hcCCcceEEEeCCCchHHHH-----------------HHHcCCCCEEEeCChHHHHHHhhcCCCcCCceeEEEEcchhHH
Q 010357 119 RFHWIVPGYVMGGENRSKEK-----------------ARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRI 181 (512)
Q Consensus 119 ~~~~~~~~~~~~g~~~~~~~-----------------~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lV~DEah~l 181 (512)
. ...+..+....... ......+.|+.+|=--+.+ +.|....+++.|+|||-.+
T Consensus 739 ~-----~lRLG~~~kih~~v~e~~~~~~~s~ks~~~l~~~~~~~~IVa~TClgi~~-----plf~~R~FD~cIiDEASQI 808 (1100)
T KOG1805|consen 739 Y-----ILRLGSEEKIHPDVEEFTLTNETSEKSYADLKKFLDQTSIVACTCLGINH-----PLFVNRQFDYCIIDEASQI 808 (1100)
T ss_pred c-----eeecCCccccchHHHHHhcccccchhhHHHHHHHhCCCcEEEEEccCCCc-----hhhhccccCEEEEcccccc
Confidence 1 11111111111111 2233456788877433332 2233456899999999986
Q ss_pred Hh
Q 010357 182 LE 183 (512)
Q Consensus 182 ~~ 183 (512)
..
T Consensus 809 ~l 810 (1100)
T KOG1805|consen 809 LL 810 (1100)
T ss_pred cc
Confidence 54
No 213
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=97.10 E-value=0.002 Score=58.85 Aligned_cols=67 Identities=18% Similarity=0.307 Sum_probs=44.1
Q ss_pred CCCCCcHHHHHHHHHhh-------cCCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcHHHHHHHH
Q 010357 38 GFEAPTKVQAQAIPVIL-------SGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVY 110 (512)
Q Consensus 38 ~~~~~~~~Q~~~~~~~~-------~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~ 110 (512)
.|......++.++..+. ++.++++.||+|+|||..+...+.+.. . .|. .++++++.+++.++.
T Consensus 80 d~~~~~~~~~~~l~~~~~~~~~~~~~~nl~l~G~~G~GKThLa~Ai~~~l~-~--------~g~-sv~f~~~~el~~~Lk 149 (254)
T COG1484 80 DFEFQPGIDKKALEDLASLVEFFERGENLVLLGPPGVGKTHLAIAIGNELL-K--------AGI-SVLFITAPDLLSKLK 149 (254)
T ss_pred cccCCcchhHHHHHHHHHHHHHhccCCcEEEECCCCCcHHHHHHHHHHHHH-H--------cCC-eEEEEEHHHHHHHHH
Confidence 44444445555444332 567999999999999999887777766 4 133 445567778777666
Q ss_pred HHHH
Q 010357 111 EILH 114 (512)
Q Consensus 111 ~~~~ 114 (512)
..+.
T Consensus 150 ~~~~ 153 (254)
T COG1484 150 AAFD 153 (254)
T ss_pred HHHh
Confidence 5444
No 214
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=97.09 E-value=0.011 Score=64.56 Aligned_cols=75 Identities=17% Similarity=0.122 Sum_probs=51.7
Q ss_pred CCCHHHHHHHHHhcCCCCCcHHHHHHHHHhhc-CCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCc
Q 010357 24 GLHSTLCDQLRERLGFEAPTKVQAQAIPVILS-GRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPT 102 (512)
Q Consensus 24 ~l~~~~~~~l~~~~~~~~~~~~Q~~~~~~~~~-~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt 102 (512)
+.++......... ++. +++-|++++..+.. ++-.+|.|+.|+|||.+.-. +.+.+.. .+.+++.++||
T Consensus 366 ~v~~~~l~a~~~~-~~~-Ls~eQ~~Av~~i~~~~r~~~v~G~AGTGKTt~l~~-~~~~~e~--------~G~~V~g~ApT 434 (1102)
T PRK13826 366 GVREAVLAATFAR-HAR-LSDEQKTAIEHVAGPARIAAVVGRAGAGKTTMMKA-AREAWEA--------AGYRVVGGALA 434 (1102)
T ss_pred CCCHHHHHHHHhc-CCC-CCHHHHHHHHHHhccCCeEEEEeCCCCCHHHHHHH-HHHHHHH--------cCCeEEEEcCc
Confidence 3444444444332 554 99999999998864 45578999999999976543 3344433 36779999999
Q ss_pred HHHHHHH
Q 010357 103 RELCLQV 109 (512)
Q Consensus 103 ~~L~~q~ 109 (512)
-.-+..+
T Consensus 435 gkAA~~L 441 (1102)
T PRK13826 435 GKAAEGL 441 (1102)
T ss_pred HHHHHHH
Confidence 7766544
No 215
>PHA02533 17 large terminase protein; Provisional
Probab=97.05 E-value=0.0067 Score=61.58 Aligned_cols=75 Identities=11% Similarity=0.114 Sum_probs=57.3
Q ss_pred CCCCCcHHHHHHHHHhhcCCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHH
Q 010357 38 GFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLL 117 (512)
Q Consensus 38 ~~~~~~~~Q~~~~~~~~~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 117 (512)
+|. |.|+|++.+..+..++-.++..+=..|||.+....++..... ..+..+++++|+..-+..+.+.++.+.
T Consensus 57 Pf~-L~p~Q~~i~~~~~~~R~~ii~~aRq~GKStl~a~~al~~a~~-------~~~~~v~i~A~~~~QA~~vF~~ik~~i 128 (534)
T PHA02533 57 KVQ-MRDYQKDMLKIMHKNRFNACNLSRQLGKTTVVAIFLLHYVCF-------NKDKNVGILAHKASMAAEVLDRTKQAI 128 (534)
T ss_pred ecC-CcHHHHHHHHHHhcCeEEEEEEcCcCChHHHHHHHHHHHHHh-------CCCCEEEEEeCCHHHHHHHHHHHHHHH
Confidence 444 899999999887666667888999999999887655444332 125689999999999998888888766
Q ss_pred hhc
Q 010357 118 HRF 120 (512)
Q Consensus 118 ~~~ 120 (512)
...
T Consensus 129 e~~ 131 (534)
T PHA02533 129 ELL 131 (534)
T ss_pred HhC
Confidence 543
No 216
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.05 E-value=0.022 Score=54.44 Aligned_cols=129 Identities=21% Similarity=0.208 Sum_probs=69.7
Q ss_pred CCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHHhhcCCcceEEEeCCCchH
Q 010357 56 GRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRS 135 (512)
Q Consensus 56 ~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~g~~~~ 135 (512)
++.+.++||||.|||.+.+-.+..+.... +...-.||-+.|--+. ..+.++.++..++..
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~------~~~kVaiITtDtYRIG--A~EQLk~Ya~im~vp------------ 262 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLK------KKKKVAIITTDTYRIG--AVEQLKTYADIMGVP------------ 262 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhc------cCcceEEEEeccchhh--HHHHHHHHHHHhCCc------------
Confidence 56788999999999998877666655221 1123345554443222 233344444333311
Q ss_pred HHHHHHcCCCCEEEeCChHHHHHHhhcCCCcCCceeEEEEcchhHHH-hcCchHHHHHHHHHhccCCCCCCCCCCccccc
Q 010357 136 KEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRIL-ELGFGKEIEEILDILGSRNIGSIGEGNEVSNV 214 (512)
Q Consensus 136 ~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lV~DEah~l~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 214 (512)
=.++-+|.-|...+.. +.+.++|.+|=+-+-. +...-..+..++.....
T Consensus 263 ----------~~vv~~~~el~~ai~~-----l~~~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~--------------- 312 (407)
T COG1419 263 ----------LEVVYSPKELAEAIEA-----LRDCDVILVDTAGRSQYDKEKIEELKELIDVSHS--------------- 312 (407)
T ss_pred ----------eEEecCHHHHHHHHHH-----hhcCCEEEEeCCCCCccCHHHHHHHHHHHhcccc---------------
Confidence 2455666667665554 3366889999887521 11122334444433322
Q ss_pred ceeEEEEEEecch-hhHHHHH
Q 010357 215 KRQNLLLSATLNE-KVNHLAK 234 (512)
Q Consensus 215 ~~~~i~~SAT~~~-~~~~~~~ 234 (512)
.-..+.+|||... .++....
T Consensus 313 i~~~Lvlsat~K~~dlkei~~ 333 (407)
T COG1419 313 IEVYLVLSATTKYEDLKEIIK 333 (407)
T ss_pred ceEEEEEecCcchHHHHHHHH
Confidence 4456788888653 3343443
No 217
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=97.04 E-value=0.011 Score=51.58 Aligned_cols=48 Identities=27% Similarity=0.256 Sum_probs=35.0
Q ss_pred EEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHH
Q 010357 59 VLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKL 116 (512)
Q Consensus 59 ~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 116 (512)
+++.||+|+|||..++..+.+.+.. +.+++|++.. +-..++.+.+..+
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~---------g~~v~~~s~e-~~~~~~~~~~~~~ 49 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLAR---------GEPGLYVTLE-ESPEELIENAESL 49 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHC---------CCcEEEEECC-CCHHHHHHHHHHc
Confidence 6899999999999988877777644 6678888654 4455555555544
No 218
>PRK06835 DNA replication protein DnaC; Validated
Probab=97.03 E-value=0.0088 Score=56.77 Aligned_cols=59 Identities=22% Similarity=0.218 Sum_probs=37.7
Q ss_pred CCcHHHHHHHHHhh--------cCCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcHHHHHHH
Q 010357 41 APTKVQAQAIPVIL--------SGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQV 109 (512)
Q Consensus 41 ~~~~~Q~~~~~~~~--------~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~ 109 (512)
.|+..+..++..+. .+.++++.||||+|||..+...+.+.+.. +..++++ +...|..+.
T Consensus 160 ~~~~~~~~~~~~~~~f~~~f~~~~~~Lll~G~~GtGKThLa~aIa~~l~~~---------g~~V~y~-t~~~l~~~l 226 (329)
T PRK06835 160 SPRKNMEKILEKCKNFIENFDKNNENLLFYGNTGTGKTFLSNCIAKELLDR---------GKSVIYR-TADELIEIL 226 (329)
T ss_pred CHHHHHHHHHHHHHHHHHHHhccCCcEEEECCCCCcHHHHHHHHHHHHHHC---------CCeEEEE-EHHHHHHHH
Confidence 35566656554322 35789999999999998877666555533 5556664 444554443
No 219
>PRK06893 DNA replication initiation factor; Validated
Probab=96.95 E-value=0.0057 Score=55.24 Aligned_cols=26 Identities=15% Similarity=0.089 Sum_probs=19.6
Q ss_pred CEEEEccCCChHhHHHHHHHHHHHhh
Q 010357 58 HVLVNAATGTGKTVAYLAPIINHLQS 83 (512)
Q Consensus 58 ~~lv~~pTGsGKT~~~~~~~~~~~~~ 83 (512)
.+++.||+|+|||-.+...+.+...+
T Consensus 41 ~l~l~G~~G~GKThL~~ai~~~~~~~ 66 (229)
T PRK06893 41 FFYIWGGKSSGKSHLLKAVSNHYLLN 66 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 46899999999998776666554433
No 220
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=96.93 E-value=0.0042 Score=56.40 Aligned_cols=44 Identities=16% Similarity=0.270 Sum_probs=30.1
Q ss_pred CCceeEEEEcchhHHHhcCchHHHHHHHHHhccCCCCCCCCCCcccccceeEEEEEEecc
Q 010357 167 HTNLRWIIFDEADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLN 226 (512)
Q Consensus 167 ~~~~~~lV~DEah~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~ 226 (512)
...++.+|+||||.|... -...+...+..... ..++++.+..+.
T Consensus 127 ~~~fKiiIlDEcdsmtsd-aq~aLrr~mE~~s~---------------~trFiLIcnyls 170 (346)
T KOG0989|consen 127 CPPFKIIILDECDSMTSD-AQAALRRTMEDFSR---------------TTRFILICNYLS 170 (346)
T ss_pred CCcceEEEEechhhhhHH-HHHHHHHHHhcccc---------------ceEEEEEcCChh
Confidence 346789999999998665 34455555555444 667777777654
No 221
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=96.93 E-value=0.0017 Score=53.53 Aligned_cols=42 Identities=21% Similarity=0.150 Sum_probs=28.1
Q ss_pred CCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcHHHH
Q 010357 56 GRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELC 106 (512)
Q Consensus 56 ~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~ 106 (512)
+..+++.||+|+|||..+...+...... ...++++.+.....
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~---------~~~~~~~~~~~~~~ 43 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPP---------GGGVIYIDGEDILE 43 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCC---------CCCEEEECCEEccc
Confidence 4578999999999998876655443211 12477777775443
No 222
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.92 E-value=0.01 Score=57.56 Aligned_cols=123 Identities=11% Similarity=0.079 Sum_probs=63.5
Q ss_pred CCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEE-cCc-HHHHHHHHHHHHHHHhhcCCcceEEEeCCCch
Q 010357 57 RHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVL-VPT-RELCLQVYEILHKLLHRFHWIVPGYVMGGENR 134 (512)
Q Consensus 57 ~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil-~Pt-~~L~~q~~~~~~~~~~~~~~~~~~~~~~g~~~ 134 (512)
+.++++||||+|||.+..-.+........ ..+.++.++ +.+ |.-+.++ ++.++...+. .+
T Consensus 175 ~vi~lvGptGvGKTTT~aKLA~~~~~~~~-----~~g~~V~lit~Dt~R~aa~eQ---L~~~a~~lgv-pv--------- 236 (388)
T PRK12723 175 RVFILVGPTGVGKTTTIAKLAAIYGINSD-----DKSLNIKIITIDNYRIGAKKQ---IQTYGDIMGI-PV--------- 236 (388)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhhhc-----cCCCeEEEEeccCccHHHHHH---HHHHhhcCCc-ce---------
Confidence 45789999999999988766654432211 013334333 333 3333332 4444433332 11
Q ss_pred HHHHHHHcCCCCEEEeCChHHHHHHhhcCCCcCCceeEEEEcchhHHHhcCchHHHHHHHHHhccCCCCCCCCCCccccc
Q 010357 135 SKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNV 214 (512)
Q Consensus 135 ~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lV~DEah~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 214 (512)
..+.+++.+...+.. +.+.++|++|++.+... -...+..+...+..... .
T Consensus 237 ------------~~~~~~~~l~~~L~~-----~~~~DlVLIDTaGr~~~--~~~~l~el~~~l~~~~~-----------~ 286 (388)
T PRK12723 237 ------------KAIESFKDLKEEITQ-----SKDFDLVLVDTIGKSPK--DFMKLAEMKELLNACGR-----------D 286 (388)
T ss_pred ------------EeeCcHHHHHHHHHH-----hCCCCEEEEcCCCCCcc--CHHHHHHHHHHHHhcCC-----------C
Confidence 111233444444433 23678999999997642 12234444443332110 0
Q ss_pred ceeEEEEEEecch
Q 010357 215 KRQNLLLSATLNE 227 (512)
Q Consensus 215 ~~~~i~~SAT~~~ 227 (512)
.-.++.+|||...
T Consensus 287 ~e~~LVlsat~~~ 299 (388)
T PRK12723 287 AEFHLAVSSTTKT 299 (388)
T ss_pred CeEEEEEcCCCCH
Confidence 3467899999864
No 223
>PRK08727 hypothetical protein; Validated
Probab=96.87 E-value=0.0066 Score=55.00 Aligned_cols=35 Identities=29% Similarity=0.264 Sum_probs=24.1
Q ss_pred CCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEc
Q 010357 57 RHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLV 100 (512)
Q Consensus 57 ~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~ 100 (512)
+.+++.||+|+|||-.+...+.+.... +.+++|+.
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~~~~---------~~~~~y~~ 76 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAAEQA---------GRSSAYLP 76 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHc---------CCcEEEEe
Confidence 458999999999997766555443322 45577764
No 224
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.86 E-value=0.023 Score=54.55 Aligned_cols=127 Identities=15% Similarity=0.220 Sum_probs=66.9
Q ss_pred CCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcC--cH-HHHHHHHHHHHHHHhhcCCcceEEEeCCCc
Q 010357 57 RHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVP--TR-ELCLQVYEILHKLLHRFHWIVPGYVMGGEN 133 (512)
Q Consensus 57 ~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P--t~-~L~~q~~~~~~~~~~~~~~~~~~~~~~g~~ 133 (512)
+.+.+.||||+|||......+...... +.++.++.. .| ..+.|+.. +....+
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA~~L~~~---------GkkVglI~aDt~RiaAvEQLk~----yae~lg------------ 296 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAWQFHGK---------KKTVGFITTDHSRIGTVQQLQD----YVKTIG------------ 296 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHHc---------CCcEEEEecCCcchHHHHHHHH----HhhhcC------------
Confidence 457899999999998877776654322 444544432 23 23334332 222111
Q ss_pred hHHHHHHHcCCCCEE-EeCChHHHHHHhhcCCCcCCceeEEEEcchhHHHhcCchHHHHHHHHHhccCCCCCCCCCCccc
Q 010357 134 RSKEKARLRKGISIL-VATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILGSRNIGSIGEGNEVS 212 (512)
Q Consensus 134 ~~~~~~~~~~~~~Ii-v~Tp~~l~~~l~~~~~~~~~~~~~lV~DEah~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 212 (512)
..++ ..+|..+.+.+...... .++++|++|-+-+... -...+..+...+....
T Consensus 297 -----------ipv~v~~d~~~L~~aL~~lk~~--~~~DvVLIDTaGRs~k--d~~lm~EL~~~lk~~~----------- 350 (436)
T PRK11889 297 -----------FEVIAVRDEAAMTRALTYFKEE--ARVDYILIDTAGKNYR--ASETVEEMIETMGQVE----------- 350 (436)
T ss_pred -----------CcEEecCCHHHHHHHHHHHHhc--cCCCEEEEeCccccCc--CHHHHHHHHHHHhhcC-----------
Confidence 1222 34566666655432211 1478999999876432 2334444444443211
Q ss_pred ccceeEEEEEEecch-hhHHHHHh
Q 010357 213 NVKRQNLLLSATLNE-KVNHLAKI 235 (512)
Q Consensus 213 ~~~~~~i~~SAT~~~-~~~~~~~~ 235 (512)
+...++.+|||... .+....+.
T Consensus 351 -PdevlLVLsATtk~~d~~~i~~~ 373 (436)
T PRK11889 351 -PDYICLTLSASMKSKDMIEIITN 373 (436)
T ss_pred -CCeEEEEECCccChHHHHHHHHH
Confidence 13346778988653 44444443
No 225
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=96.85 E-value=0.0054 Score=57.93 Aligned_cols=46 Identities=17% Similarity=0.096 Sum_probs=28.4
Q ss_pred CCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcHHHHHHHHHHHH
Q 010357 57 RHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILH 114 (512)
Q Consensus 57 ~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~ 114 (512)
.+.|++||+|+|||..+-+.+-.. +....-+..+..=+.++.+.+.
T Consensus 49 ~SmIl~GPPG~GKTTlA~liA~~~------------~~~f~~~sAv~~gvkdlr~i~e 94 (436)
T COG2256 49 HSMILWGPPGTGKTTLARLIAGTT------------NAAFEALSAVTSGVKDLREIIE 94 (436)
T ss_pred ceeEEECCCCCCHHHHHHHHHHhh------------CCceEEeccccccHHHHHHHHH
Confidence 378999999999998776654432 3335555555444444444333
No 226
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=96.85 E-value=0.0035 Score=67.08 Aligned_cols=156 Identities=21% Similarity=0.216 Sum_probs=94.6
Q ss_pred CCCEEEEccCCChHhHHHHHHHHHHHhhcCCC---------CCCCCCceEEEEcCcHHHHHHHHHHHHHHHhhcCCcceE
Q 010357 56 GRHVLVNAATGTGKTVAYLAPIINHLQSYSPR---------IDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPG 126 (512)
Q Consensus 56 ~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~---------~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~ 126 (512)
|+.+++....|+|||..-+...+..+....+. ......+..|||+|. ++..||..++....... +.+
T Consensus 374 g~~~~~ade~~~qk~~~~l~~~l~~~~k~~~~~cS~~~~e~~n~~~tgaTLII~P~-aIl~QW~~EI~kH~~~~--lKv- 449 (1394)
T KOG0298|consen 374 GKRVQCADEMGWQKTSEKLILELSDLPKLCPSCCSELVKEGENLVETGATLIICPN-AILMQWFEEIHKHISSL--LKV- 449 (1394)
T ss_pred CcceeehhhhhccchHHHHHHHHhcccccchhhhhHHHhcccceeecCceEEECcH-HHHHHHHHHHHHhcccc--ceE-
Confidence 46778889999999988665544332111110 111234568999999 88899999999887542 222
Q ss_pred EEeCCCchHHHH-HHHcCCCCEEEeCChHHHHHHhhcCCC-------------cC----C--ceeEEEEcchhHHHhcCc
Q 010357 127 YVMGGENRSKEK-ARLRKGISILVATPGRLLDHLKHTSSF-------------LH----T--NLRWIIFDEADRILELGF 186 (512)
Q Consensus 127 ~~~~g~~~~~~~-~~~~~~~~Iiv~Tp~~l~~~l~~~~~~-------------~~----~--~~~~lV~DEah~l~~~~~ 186 (512)
..+-|....... ..-.-.+|||++|+..|.+-+...... .. . .+=-|++|||+.+.. .
T Consensus 450 ~~Y~Girk~~~~~~~el~~yDIVlTtYdiLr~El~hte~~~~~R~lR~qsr~~~~~SPL~~v~wWRIclDEaQMves--s 527 (1394)
T KOG0298|consen 450 LLYFGIRKTFWLSPFELLQYDIVLTTYDILRNELYHTEDFGSDRQLRHQSRYMRPNSPLLMVNWWRICLDEAQMVES--S 527 (1394)
T ss_pred EEEechhhhcccCchhhhccCEEEeehHHHHhHhhcccccCChhhhhcccCCCCCCCchHHHHHHHHhhhHHHhhcc--h
Confidence 333332221111 111235799999999997766542111 00 0 111489999996543 5
Q ss_pred hHHHHHHHHHhccCCCCCCCCCCcccccceeEEEEEEecchhhHHHH
Q 010357 187 GKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLA 233 (512)
Q Consensus 187 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~ 233 (512)
......++.+++ .....++|+||-..+..+.
T Consensus 528 sS~~a~M~~rL~----------------~in~W~VTGTPiq~Iddl~ 558 (1394)
T KOG0298|consen 528 SSAAAEMVRRLH----------------AINRWCVTGTPIQKIDDLF 558 (1394)
T ss_pred HHHHHHHHHHhh----------------hhceeeecCCchhhhhhhH
Confidence 667777777777 4455889999765544433
No 227
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.84 E-value=0.045 Score=46.26 Aligned_cols=38 Identities=29% Similarity=0.332 Sum_probs=27.2
Q ss_pred EEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcHHH
Q 010357 59 VLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTREL 105 (512)
Q Consensus 59 ~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L 105 (512)
+++.||+|+|||..+...+...... +..++++......
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~---------~~~v~~~~~e~~~ 39 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATK---------GGKVVYVDIEEEI 39 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhc---------CCEEEEEECCcch
Confidence 6789999999998877766655432 5667777665443
No 228
>PRK12377 putative replication protein; Provisional
Probab=96.84 E-value=0.021 Score=51.78 Aligned_cols=44 Identities=18% Similarity=0.193 Sum_probs=29.0
Q ss_pred CCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcHHHHHHHH
Q 010357 57 RHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVY 110 (512)
Q Consensus 57 ~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~ 110 (512)
.++++.||+|+|||..+...+...... +..++++ +..+|..++.
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~l~~~---------g~~v~~i-~~~~l~~~l~ 145 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNRLLAK---------GRSVIVV-TVPDVMSRLH 145 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHc---------CCCeEEE-EHHHHHHHHH
Confidence 578999999999998876666555433 4445444 4445555443
No 229
>PRK08116 hypothetical protein; Validated
Probab=96.83 E-value=0.028 Score=52.01 Aligned_cols=24 Identities=25% Similarity=0.224 Sum_probs=18.9
Q ss_pred CEEEEccCCChHhHHHHHHHHHHH
Q 010357 58 HVLVNAATGTGKTVAYLAPIINHL 81 (512)
Q Consensus 58 ~~lv~~pTGsGKT~~~~~~~~~~~ 81 (512)
.+++.|++|+|||..+...+.+..
T Consensus 116 gl~l~G~~GtGKThLa~aia~~l~ 139 (268)
T PRK08116 116 GLLLWGSVGTGKTYLAACIANELI 139 (268)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHH
Confidence 489999999999988776554443
No 230
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=96.80 E-value=0.14 Score=60.38 Aligned_cols=65 Identities=14% Similarity=0.236 Sum_probs=48.1
Q ss_pred CCCCCcHHHHHHHHHhhcC--CCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcHHHHHHHHHH
Q 010357 38 GFEAPTKVQAQAIPVILSG--RHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEI 112 (512)
Q Consensus 38 ~~~~~~~~Q~~~~~~~~~~--~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~ 112 (512)
++. +++-|++++..++.+ +-.+|.++.|+|||.+.-. +.+.+.. .|..++.++||..-+..+.+.
T Consensus 427 ~~~-Ls~~Q~~Av~~il~s~~~v~ii~G~aGTGKTt~l~~-l~~~~~~--------~G~~V~~lAPTgrAA~~L~e~ 493 (1960)
T TIGR02760 427 EFA-LSPSNKDAVSTLFTSTKRFIIINGFGGTGSTEIAQL-LLHLASE--------QGYEIQIITAGSLSAQELRQK 493 (1960)
T ss_pred cCC-CCHHHHHHHHHHHhCCCCeEEEEECCCCCHHHHHHH-HHHHHHh--------cCCeEEEEeCCHHHHHHHHHH
Confidence 443 889999999998865 4568999999999976433 3333333 367899999998877666554
No 231
>PRK05642 DNA replication initiation factor; Validated
Probab=96.78 E-value=0.01 Score=53.72 Aligned_cols=31 Identities=13% Similarity=0.267 Sum_probs=20.4
Q ss_pred ceeEEEEcchhHHHhc-CchHHHHHHHHHhcc
Q 010357 169 NLRWIIFDEADRILEL-GFGKEIEEILDILGS 199 (512)
Q Consensus 169 ~~~~lV~DEah~l~~~-~~~~~~~~i~~~~~~ 199 (512)
+.++||+|++|.+... .+...+..++..+..
T Consensus 97 ~~d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~ 128 (234)
T PRK05642 97 QYELVCLDDLDVIAGKADWEEALFHLFNRLRD 128 (234)
T ss_pred hCCEEEEechhhhcCChHHHHHHHHHHHHHHh
Confidence 4578999999977543 234456666666543
No 232
>PRK08084 DNA replication initiation factor; Provisional
Probab=96.73 E-value=0.017 Score=52.39 Aligned_cols=25 Identities=12% Similarity=0.157 Sum_probs=19.2
Q ss_pred CCCEEEEccCCChHhHHHHHHHHHH
Q 010357 56 GRHVLVNAATGTGKTVAYLAPIINH 80 (512)
Q Consensus 56 ~~~~lv~~pTGsGKT~~~~~~~~~~ 80 (512)
+.++++.||+|+|||-.+...+.+.
T Consensus 45 ~~~l~l~Gp~G~GKThLl~a~~~~~ 69 (235)
T PRK08084 45 SGYIYLWSREGAGRSHLLHAACAEL 69 (235)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 3578999999999997766555443
No 233
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=96.69 E-value=0.016 Score=58.28 Aligned_cols=45 Identities=13% Similarity=0.130 Sum_probs=28.2
Q ss_pred CCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcHHHHHHH
Q 010357 57 RHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQV 109 (512)
Q Consensus 57 ~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~ 109 (512)
+.+++.||+|+|||..+...+.+.... ..+..++++ +...+..+.
T Consensus 149 ~~l~l~G~~G~GKThL~~ai~~~~~~~-------~~~~~v~yi-~~~~~~~~~ 193 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHAIGNYILEK-------NPNAKVVYV-TSEKFTNDF 193 (450)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHh-------CCCCeEEEE-EHHHHHHHH
Confidence 458999999999998776655444332 124456665 444554433
No 234
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.69 E-value=0.061 Score=47.09 Aligned_cols=25 Identities=20% Similarity=0.174 Sum_probs=20.4
Q ss_pred EEEEccCCChHhHHHHHHHHHHHhh
Q 010357 59 VLVNAATGTGKTVAYLAPIINHLQS 83 (512)
Q Consensus 59 ~lv~~pTGsGKT~~~~~~~~~~~~~ 83 (512)
++++||||+|||.+..-.+.....+
T Consensus 4 i~lvGptGvGKTTt~aKLAa~~~~~ 28 (196)
T PF00448_consen 4 IALVGPTGVGKTTTIAKLAARLKLK 28 (196)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred EEEECCCCCchHhHHHHHHHHHhhc
Confidence 6789999999999988777666544
No 235
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=96.65 E-value=0.013 Score=52.34 Aligned_cols=46 Identities=15% Similarity=0.148 Sum_probs=29.6
Q ss_pred ceeEEEEcchhHHHhcC-chHHHHHHHHHhccCCCCCCCCCCcccccceeEEEEEEecchh
Q 010357 169 NLRWIIFDEADRILELG-FGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEK 228 (512)
Q Consensus 169 ~~~~lV~DEah~l~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~ 228 (512)
..++|++|.+|.+.+.. ....+..++..+... ..++|+.|...|..
T Consensus 97 ~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~--------------~k~li~ts~~~P~~ 143 (219)
T PF00308_consen 97 SADLLIIDDIQFLAGKQRTQEELFHLFNRLIES--------------GKQLILTSDRPPSE 143 (219)
T ss_dssp TSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHT--------------TSEEEEEESS-TTT
T ss_pred cCCEEEEecchhhcCchHHHHHHHHHHHHHHhh--------------CCeEEEEeCCCCcc
Confidence 67899999999876532 344555666665542 45677776666553
No 236
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=96.61 E-value=0.015 Score=52.52 Aligned_cols=26 Identities=19% Similarity=0.276 Sum_probs=20.5
Q ss_pred cCCCEEEEccCCChHhHHHHHHHHHH
Q 010357 55 SGRHVLVNAATGTGKTVAYLAPIINH 80 (512)
Q Consensus 55 ~~~~~lv~~pTGsGKT~~~~~~~~~~ 80 (512)
.+.++++.||+|+|||..+...+.+.
T Consensus 37 ~~~~lll~G~~G~GKT~la~~~~~~~ 62 (226)
T TIGR03420 37 GDRFLYLWGESGSGKSHLLQAACAAA 62 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 45689999999999998876655544
No 237
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=96.56 E-value=0.021 Score=56.68 Aligned_cols=37 Identities=16% Similarity=0.152 Sum_probs=24.4
Q ss_pred CCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEc
Q 010357 57 RHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLV 100 (512)
Q Consensus 57 ~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~ 100 (512)
+.+++.||+|+|||..+...+.+.... ..+..++++.
T Consensus 137 n~l~l~G~~G~GKThL~~ai~~~l~~~-------~~~~~v~yi~ 173 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLLHAIGNEILEN-------NPNAKVVYVS 173 (405)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHh-------CCCCcEEEEE
Confidence 357899999999998875554444332 1245577764
No 238
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=96.56 E-value=0.023 Score=56.68 Aligned_cols=38 Identities=13% Similarity=0.115 Sum_probs=25.3
Q ss_pred CCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcC
Q 010357 57 RHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVP 101 (512)
Q Consensus 57 ~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P 101 (512)
+.+++.||+|+|||..+...+.+.... ..+.+++++..
T Consensus 131 n~l~lyG~~G~GKTHLl~ai~~~l~~~-------~~~~~v~yi~~ 168 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQSIGNYVVQN-------EPDLRVMYITS 168 (440)
T ss_pred CeEEEEcCCCCcHHHHHHHHHHHHHHh-------CCCCeEEEEEH
Confidence 468999999999998766555443332 12455777643
No 239
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.55 E-value=0.027 Score=55.72 Aligned_cols=26 Identities=27% Similarity=0.253 Sum_probs=20.3
Q ss_pred CCCEEEEccCCChHhHHHHHHHHHHH
Q 010357 56 GRHVLVNAATGTGKTVAYLAPIINHL 81 (512)
Q Consensus 56 ~~~~lv~~pTGsGKT~~~~~~~~~~~ 81 (512)
++.+++.+|||+|||.+....+....
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~ 246 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYA 246 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 45678999999999988776665543
No 240
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=96.51 E-value=0.01 Score=59.99 Aligned_cols=72 Identities=19% Similarity=0.200 Sum_probs=54.4
Q ss_pred HHHHHHHHHhhc-----C----CCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcHHHHHHHHHHHH
Q 010357 44 KVQAQAIPVILS-----G----RHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILH 114 (512)
Q Consensus 44 ~~Q~~~~~~~~~-----~----~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~ 114 (512)
|||+-.+..++. | +.+++.-|=|-|||......++..+.-.. ..+..++++++++.-+....+.+.
T Consensus 1 PwQ~fi~~~i~G~~~~~g~rrf~~~~l~v~RkNGKS~l~a~i~ly~l~~~g-----~~~~~i~~~A~~~~QA~~~f~~~~ 75 (477)
T PF03354_consen 1 PWQKFILRSIFGWRKDDGRRRFREVYLEVPRKNGKSTLAAAIALYMLFLDG-----EPGAEIYCAANTRDQAKIVFDEAK 75 (477)
T ss_pred CcHHHHHHHHhceEcCCCCEEEEEEEEEEcCccCccHHHHHHHHHHHhcCC-----ccCceEEEEeCCHHHHHHHHHHHH
Confidence 678877776662 2 35788889999999887766665554321 236789999999999999999999
Q ss_pred HHHhhc
Q 010357 115 KLLHRF 120 (512)
Q Consensus 115 ~~~~~~ 120 (512)
.+....
T Consensus 76 ~~i~~~ 81 (477)
T PF03354_consen 76 KMIEAS 81 (477)
T ss_pred HHHHhC
Confidence 887653
No 241
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=96.50 E-value=0.00032 Score=71.53 Aligned_cols=79 Identities=24% Similarity=0.407 Sum_probs=58.2
Q ss_pred chHHHHHHHHHhhhccccCceEEEEeecchhhhhHHHhhhhhcCCCCCCChhHHHhhhhccceeeecCCCCHHHHHHHHH
Q 010357 301 SRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFG 380 (512)
Q Consensus 301 ~k~~~l~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~l~g~~~~~~r~~~~~ 380 (512)
.|...|...++.+ ...+.++++|..-......+-.++... + ....+.|..+...|+..+.
T Consensus 615 ~k~~~l~~~~~~l--~~~ghrvl~~~q~~~~ldlled~~~~~-----------------~-~~~r~dG~~~~~~rq~ai~ 674 (696)
T KOG0383|consen 615 GKLTLLLKMLKKL--KSSGHRVLIFSQMIHMLDLLEDYLTYE-----------------G-KYERIDGPITGPERQAAID 674 (696)
T ss_pred HHHHHHHHHHHHH--HhcchhhHHHHHHHHHHHHhHHHHhcc-----------------C-cceeccCCccchhhhhhcc
Confidence 4444555555555 345789999998888887777777655 4 5667799999999999999
Q ss_pred hhhcC---CCcEEEeecccccC
Q 010357 381 AFKTE---KKALLLSTDVAARG 399 (512)
Q Consensus 381 ~f~~~---~~~vLvaT~~~~~G 399 (512)
+|... ....|.+|.+.+.|
T Consensus 675 ~~n~~~~~~~cfllstra~g~g 696 (696)
T KOG0383|consen 675 RFNAPGSNQFCFLLSTRAGGLG 696 (696)
T ss_pred ccCCCCccceEEEeecccccCC
Confidence 99943 34578889887765
No 242
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=96.49 E-value=0.0084 Score=63.26 Aligned_cols=71 Identities=20% Similarity=0.154 Sum_probs=57.0
Q ss_pred CCcHHHHHHHHHhhcCCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHHh
Q 010357 41 APTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLH 118 (512)
Q Consensus 41 ~~~~~Q~~~~~~~~~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~ 118 (512)
.+++-|++|+.. ...+++|.|..|||||.+...-+...+.... ..+.++|+++.|+..|.++.+.+...+.
T Consensus 2 ~Ln~~Q~~av~~--~~g~~lV~AgpGSGKT~vL~~Ria~Li~~~~-----v~p~~IL~lTFT~kAA~em~~Rl~~~l~ 72 (672)
T PRK10919 2 RLNPGQQQAVEF--VTGPCLVLAGAGSGKTRVITNKIAHLIRGCG-----YQARHIAAVTFTNKAAREMKERVAQTLG 72 (672)
T ss_pred CCCHHHHHHHhC--CCCCEEEEecCCCCHHHHHHHHHHHHHHhcC-----CCHHHeeeEechHHHHHHHHHHHHHHhC
Confidence 378999999975 3458999999999999998888888775422 1256699999999999999888877643
No 243
>PF13871 Helicase_C_4: Helicase_C-like
Probab=96.49 E-value=0.0075 Score=55.01 Aligned_cols=64 Identities=20% Similarity=0.306 Sum_probs=52.8
Q ss_pred HHHHhhhcCCCcEEEeecccccCCCCCC--------CcEEEEeCCCCChhHHHHhhhhcccCCCCc-cEEEec
Q 010357 377 TTFGAFKTEKKALLLSTDVAARGLDFPK--------VKCIIQYDSAGEATEYVHRVGRTARLGERG-DSLLFL 440 (512)
Q Consensus 377 ~~~~~f~~~~~~vLvaT~~~~~Gldip~--------~~~VI~~~~p~s~~~~~Q~~GRagR~g~~g-~~~~~~ 440 (512)
...+.|.+|+..|+|.+++++.|+.+.. -.+-|...+||+....+|..||+.|.|+.. -.|.++
T Consensus 52 ~e~~~F~~g~k~v~iis~AgstGiSlHAd~~~~nqr~Rv~i~le~pwsad~aiQ~~GR~hRsnQ~~~P~y~~l 124 (278)
T PF13871_consen 52 AEKQAFMDGEKDVAIISDAGSTGISLHADRRVKNQRRRVHITLELPWSADKAIQQFGRTHRSNQVSAPEYRFL 124 (278)
T ss_pred HHHHHHhCCCceEEEEecccccccchhccccCCCCCceEEEEeeCCCCHHHHHHHhccccccccccCCEEEEe
Confidence 5567899999999999999999998863 236778889999999999999999999853 334433
No 244
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=96.45 E-value=0.044 Score=50.51 Aligned_cols=57 Identities=16% Similarity=0.114 Sum_probs=32.2
Q ss_pred CCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHH
Q 010357 57 RHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHK 115 (512)
Q Consensus 57 ~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~ 115 (512)
.+++++|+||-|||.+.--....+-.... .+...-+-+.+-+|...=....+..+-.
T Consensus 62 p~lLivG~snnGKT~Ii~rF~~~hp~~~d--~~~~~~PVv~vq~P~~p~~~~~Y~~IL~ 118 (302)
T PF05621_consen 62 PNLLIVGDSNNGKTMIIERFRRLHPPQSD--EDAERIPVVYVQMPPEPDERRFYSAILE 118 (302)
T ss_pred CceEEecCCCCcHHHHHHHHHHHCCCCCC--CCCccccEEEEecCCCCChHHHHHHHHH
Confidence 47999999999999865433332211111 1111224566667777655555555433
No 245
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=96.44 E-value=0.051 Score=61.61 Aligned_cols=63 Identities=29% Similarity=0.283 Sum_probs=45.5
Q ss_pred CCcHHHHHHHHHhhcC--CCEEEEccCCChHhHHHHHH--HHHHHhhcCCCCCCCCCceEEEEcCcHHHHHHHH
Q 010357 41 APTKVQAQAIPVILSG--RHVLVNAATGTGKTVAYLAP--IINHLQSYSPRIDRSSGTFALVLVPTRELCLQVY 110 (512)
Q Consensus 41 ~~~~~Q~~~~~~~~~~--~~~lv~~pTGsGKT~~~~~~--~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~ 110 (512)
.+++-|++|+..++.+ +-++|+|..|+|||.+.-.. ++..+.. ..+..++.++||-.-+..+.
T Consensus 835 ~Lt~~Qr~Av~~iLts~dr~~~IqG~AGTGKTT~l~~i~~~~~~l~e-------~~g~~V~glAPTgkAa~~L~ 901 (1623)
T PRK14712 835 KLTSGQRAATRMILETSDRFTVVQGYAGVGKTTQFRAVMSAVNMLPE-------SERPRVVGLGPTHRAVGEMR 901 (1623)
T ss_pred ccCHHHHHHHHHHHhCCCceEEEEeCCCCCHHHHHHHHHHHHHHHhh-------ccCceEEEEechHHHHHHHH
Confidence 4999999999999854 66889999999999874322 2222211 13566899999987766553
No 246
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.43 E-value=0.039 Score=52.00 Aligned_cols=171 Identities=22% Similarity=0.261 Sum_probs=90.0
Q ss_pred ccCCcccCCCCHHHHHHHHHhcCCCCC-------------cHHHHHHH------HHhhcC-----CCEEEEccCCChHhH
Q 010357 16 ASCSFSSLGLHSTLCDQLRERLGFEAP-------------TKVQAQAI------PVILSG-----RHVLVNAATGTGKTV 71 (512)
Q Consensus 16 ~~~~~~~~~l~~~~~~~l~~~~~~~~~-------------~~~Q~~~~------~~~~~~-----~~~lv~~pTGsGKT~ 71 (512)
....|++++...++.+.|..-+==.+| -..-++|+ |.+.+| +.+|+++|+|+|||+
T Consensus 181 ~~~~f~~~~~d~~Lve~lerdIl~~np~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPWkgvLm~GPPGTGKTl 260 (491)
T KOG0738|consen 181 EDKKFDSLGYDADLVEALERDILQRNPNIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPWKGVLMVGPPGTGKTL 260 (491)
T ss_pred ccCCCCcccchHHHHHHHHHHHhccCCCcChHhhcchHHHHHHHHHHHhhhhhhHHHHhhcccccceeeeeCCCCCcHHH
Confidence 455788899988888888543200011 11222222 223343 679999999999998
Q ss_pred HHHHHHHHHHhhcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHHhhcCCcceEEEeCCCchHHHHHHHcCCCCEEEeC
Q 010357 72 AYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVAT 151 (512)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~Iiv~T 151 (512)
.+=..+-+. ....|-+.+..|+..|.-+
T Consensus 261 LAKAvATEc-------------~tTFFNVSsstltSKwRGe--------------------------------------- 288 (491)
T KOG0738|consen 261 LAKAVATEC-------------GTTFFNVSSSTLTSKWRGE--------------------------------------- 288 (491)
T ss_pred HHHHHHHhh-------------cCeEEEechhhhhhhhccc---------------------------------------
Confidence 765555442 2356666665665543322
Q ss_pred ChHHHHHHhhcCCCcCCceeEEEEcchhHHHhcC-----ch---HHHHHHHHHhccCCCCCCCCCCcccccceeEEEEEE
Q 010357 152 PGRLLDHLKHTSSFLHTNLRWIIFDEADRILELG-----FG---KEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSA 223 (512)
Q Consensus 152 p~~l~~~l~~~~~~~~~~~~~lV~DEah~l~~~~-----~~---~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~SA 223 (512)
.|++.++|.....+. .-..|.|||++.+...- +. +.-..++-....... .......++++.|
T Consensus 289 SEKlvRlLFemARfy--APStIFiDEIDslcs~RG~s~EHEaSRRvKsELLvQmDG~~~--------t~e~~k~VmVLAA 358 (491)
T KOG0738|consen 289 SEKLVRLLFEMARFY--APSTIFIDEIDSLCSQRGGSSEHEASRRVKSELLVQMDGVQG--------TLENSKVVMVLAA 358 (491)
T ss_pred hHHHHHHHHHHHHHh--CCceeehhhHHHHHhcCCCccchhHHHHHHHHHHHHhhcccc--------ccccceeEEEEec
Confidence 233333333322121 34689999999987641 11 111122222211100 0011345667777
Q ss_pred ecch-hhHHHHHhhcCCCeEEccCCC
Q 010357 224 TLNE-KVNHLAKISLETPVLIGLDEK 248 (512)
Q Consensus 224 T~~~-~~~~~~~~~~~~~~~~~~~~~ 248 (512)
|--+ +++..+..-+...++|.++..
T Consensus 359 TN~PWdiDEAlrRRlEKRIyIPLP~~ 384 (491)
T KOG0738|consen 359 TNFPWDIDEALRRRLEKRIYIPLPDA 384 (491)
T ss_pred cCCCcchHHHHHHHHhhheeeeCCCH
Confidence 7433 456666666666666655543
No 247
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=96.29 E-value=0.03 Score=50.59 Aligned_cols=27 Identities=15% Similarity=0.261 Sum_probs=20.4
Q ss_pred cCCCEEEEccCCChHhHHHHHHHHHHH
Q 010357 55 SGRHVLVNAATGTGKTVAYLAPIINHL 81 (512)
Q Consensus 55 ~~~~~lv~~pTGsGKT~~~~~~~~~~~ 81 (512)
.++.+++.||+|+|||..+.....+..
T Consensus 41 ~~~~~~l~G~~G~GKT~La~ai~~~~~ 67 (227)
T PRK08903 41 ADRFFYLWGEAGSGRSHLLQALVADAS 67 (227)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 345799999999999977666555443
No 248
>TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=96.28 E-value=0.038 Score=62.57 Aligned_cols=123 Identities=20% Similarity=0.169 Sum_probs=82.6
Q ss_pred CcHHHHHHHHHhhcCCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHHhhcC
Q 010357 42 PTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFH 121 (512)
Q Consensus 42 ~~~~Q~~~~~~~~~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~ 121 (512)
+|+-|++++.. .+++++|.|..|||||.+..--++..+... ....++++++=|+..+.++.+.+...+...-
T Consensus 2 ~t~~Q~~ai~~--~~~~~lv~A~AGsGKT~~lv~r~~~~~~~~------~~~~~il~~tFt~~aa~e~~~ri~~~l~~~~ 73 (1232)
T TIGR02785 2 WTDEQWQAIYT--RGQNILVSASAGSGKTAVLVERIIKKILRG------VDIDRLLVVTFTNAAAREMKERIEEALQKAL 73 (1232)
T ss_pred CCHHHHHHHhC--CCCCEEEEecCCCcHHHHHHHHHHHHHhcC------CCHhhEEEEeccHHHHHHHHHHHHHHHHHHH
Confidence 68899999974 688999999999999999888777766541 1235699999999999999888877654311
Q ss_pred CcceEEEeCCCchHHHHHHHcCCCCEEEeCChHHHHHHhhcCCC--cCCceeEEEEcchhH
Q 010357 122 WIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSF--LHTNLRWIIFDEADR 180 (512)
Q Consensus 122 ~~~~~~~~~g~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~--~~~~~~~lV~DEah~ 180 (512)
.. ........+.+..-...-|+|-..+...+-+.... .+ +..+=|.||...
T Consensus 74 ~~-------~p~~~~L~~q~~~~~~~~i~Tihsf~~~~~~~~~~~l~l-dP~F~i~de~e~ 126 (1232)
T TIGR02785 74 QQ-------EPNSKHLRRQLALLNTANISTLHSFCLKVIRKHYYLLDL-DPSFRILTDTEQ 126 (1232)
T ss_pred hc-------CchhHHHHHHHhhccCCeEeeHHHHHHHHHHHhhhhcCC-CCCceeCCHHHH
Confidence 00 11222333334344567899998886544432222 11 224556898875
No 249
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=96.27 E-value=0.033 Score=55.65 Aligned_cols=49 Identities=22% Similarity=0.233 Sum_probs=28.8
Q ss_pred CCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcHHHHHHHHHHH
Q 010357 57 RHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEIL 113 (512)
Q Consensus 57 ~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~ 113 (512)
+.+++.|++|+|||...... .+.+... .++.+++++.+ ..+..+....+
T Consensus 142 npl~i~G~~G~GKTHLl~Ai-~~~l~~~------~~~~~v~yv~~-~~f~~~~~~~l 190 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAA-KNYIESN------FSDLKVSYMSG-DEFARKAVDIL 190 (450)
T ss_pred CceEEECCCCCcHHHHHHHH-HHHHHHh------CCCCeEEEEEH-HHHHHHHHHHH
Confidence 45889999999999665433 3333321 12455666544 45555444433
No 250
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=96.25 E-value=0.061 Score=51.40 Aligned_cols=48 Identities=19% Similarity=0.219 Sum_probs=29.6
Q ss_pred CccCCcccCCCCHHHHHHHHHhcCCCCCcHHHHHHHHHhhcC--CCEE-EEccCCChHhHHHHHHHH
Q 010357 15 FASCSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSG--RHVL-VNAATGTGKTVAYLAPII 78 (512)
Q Consensus 15 ~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~Q~~~~~~~~~~--~~~l-v~~pTGsGKT~~~~~~~~ 78 (512)
+-..+|+++-.++++.+.+.... .++ .+.+ +.||+|+|||..+...+.
T Consensus 15 yrP~~~~~~~~~~~~~~~l~~~~----------------~~~~~~~~lll~G~~G~GKT~la~~l~~ 65 (316)
T PHA02544 15 YRPSTIDECILPAADKETFKSIV----------------KKGRIPNMLLHSPSPGTGKTTVAKALCN 65 (316)
T ss_pred cCCCcHHHhcCcHHHHHHHHHHH----------------hcCCCCeEEEeeCcCCCCHHHHHHHHHH
Confidence 44456777767776666664321 122 2344 489999999977655443
No 251
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=96.25 E-value=0.039 Score=54.93 Aligned_cols=61 Identities=26% Similarity=0.342 Sum_probs=47.3
Q ss_pred cCCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHHh
Q 010357 55 SGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLH 118 (512)
Q Consensus 55 ~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~ 118 (512)
.++-++|+|..|||||.+++--++..++.+.... .+..++++.|.+.+..=+.+.+-.++.
T Consensus 225 k~~ilVVQGaAGSGKTtiALHRvAyLlY~~R~~l---~~k~vlvl~PN~vFleYis~VLPeLGe 285 (747)
T COG3973 225 KNKILVVQGAAGSGKTTIALHRVAYLLYGYRGPL---QAKPVLVLGPNRVFLEYISRVLPELGE 285 (747)
T ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHhcccccc---ccCceEEEcCcHHHHHHHHHhchhhcc
Confidence 3456789999999999999988888887755432 344599999999988877777776643
No 252
>PF13173 AAA_14: AAA domain
Probab=96.23 E-value=0.06 Score=43.59 Aligned_cols=25 Identities=16% Similarity=0.252 Sum_probs=19.3
Q ss_pred CCCEEEEccCCChHhHHHHHHHHHH
Q 010357 56 GRHVLVNAATGTGKTVAYLAPIINH 80 (512)
Q Consensus 56 ~~~~lv~~pTGsGKT~~~~~~~~~~ 80 (512)
++-+++.||.|+|||......+...
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~ 26 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDL 26 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHh
Confidence 4568899999999998776655444
No 253
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=96.22 E-value=0.013 Score=62.49 Aligned_cols=72 Identities=21% Similarity=0.192 Sum_probs=58.2
Q ss_pred CCCcHHHHHHHHHhhcCCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHHh
Q 010357 40 EAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLH 118 (512)
Q Consensus 40 ~~~~~~Q~~~~~~~~~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~ 118 (512)
..+++-|++++.. ...+++|.|..|||||.+...-+...+.... -...++|+++.|+..|.++.+.+..+..
T Consensus 3 ~~Ln~~Q~~av~~--~~g~~lV~AgaGSGKT~~L~~Ria~Li~~~~-----v~p~~IL~lTFTnkAA~em~~Rl~~~~~ 74 (715)
T TIGR01075 3 DGLNDKQREAVAA--PPGNLLVLAGAGSGKTRVLTHRIAWLLSVEN-----ASPHSIMAVTFTNKAAAEMRHRIGALLG 74 (715)
T ss_pred cccCHHHHHHHcC--CCCCEEEEecCCCCHHHHHHHHHHHHHHcCC-----CCHHHeEeeeccHHHHHHHHHHHHHHhc
Confidence 3589999999965 3458999999999999998888877775422 1256699999999999999998888754
No 254
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=96.21 E-value=0.0012 Score=56.08 Aligned_cols=123 Identities=21% Similarity=0.235 Sum_probs=54.1
Q ss_pred EEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHHhhcCCcceEEEeCCCchHHH-H
Q 010357 60 LVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKE-K 138 (512)
Q Consensus 60 lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~ 138 (512)
++.|+-|-|||.+..+.+...... ...++++.+|+.+-++...+.+..-+...+... .-...... .
T Consensus 1 VltA~RGRGKSa~lGl~~a~l~~~--------~~~~I~vtAP~~~~~~~lf~~~~~~l~~~~~~~-----~~~~~~~~~~ 67 (177)
T PF05127_consen 1 VLTADRGRGKSAALGLAAAALIQK--------GKIRILVTAPSPENVQTLFEFAEKGLKALGYKE-----EKKKRIGQII 67 (177)
T ss_dssp -EEE-TTSSHHHHHHHCCCCSSS-------------EEEE-SS--S-HHHHHCC--------------------------
T ss_pred CccCCCCCCHHHHHHHHHHHHHHh--------cCceEEEecCCHHHHHHHHHHHHhhcccccccc-----cccccccccc
Confidence 578999999998877766554433 124699999999877776665554433222111 00000000 0
Q ss_pred HHHcCCCCEEEeCChHHHHHHhhcCCCcCCceeEEEEcchhHHHhcCchHHHHHHHHHhccCCCCCCCCCCcccccceeE
Q 010357 139 ARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQN 218 (512)
Q Consensus 139 ~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lV~DEah~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (512)
........|-+..|+.+...-. ..+++|||||=.+ --..+..++. ....
T Consensus 68 ~~~~~~~~i~f~~Pd~l~~~~~--------~~DlliVDEAAaI----p~p~L~~ll~-------------------~~~~ 116 (177)
T PF05127_consen 68 KLRFNKQRIEFVAPDELLAEKP--------QADLLIVDEAAAI----PLPLLKQLLR-------------------RFPR 116 (177)
T ss_dssp -----CCC--B--HHHHCCT------------SCEEECTGGGS-----HHHHHHHHC-------------------CSSE
T ss_pred ccccccceEEEECCHHHHhCcC--------CCCEEEEechhcC----CHHHHHHHHh-------------------hCCE
Confidence 0011134566666666543211 3589999999975 2234444443 3445
Q ss_pred EEEEEecc
Q 010357 219 LLLSATLN 226 (512)
Q Consensus 219 i~~SAT~~ 226 (512)
+++|.|+.
T Consensus 117 vv~stTi~ 124 (177)
T PF05127_consen 117 VVFSTTIH 124 (177)
T ss_dssp EEEEEEBS
T ss_pred EEEEeecc
Confidence 78888874
No 255
>PRK11054 helD DNA helicase IV; Provisional
Probab=96.20 E-value=0.028 Score=59.00 Aligned_cols=70 Identities=24% Similarity=0.182 Sum_probs=55.7
Q ss_pred CCcHHHHHHHHHhhcCCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHH
Q 010357 41 APTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLL 117 (512)
Q Consensus 41 ~~~~~Q~~~~~~~~~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 117 (512)
.+++-|++|+-. ...+++|.|..|||||.+...-+...+.... ..+.++++++.|+..+..+.+.+...+
T Consensus 196 ~L~~~Q~~av~~--~~~~~lV~agaGSGKT~vl~~r~ayLl~~~~-----~~~~~IL~ltft~~AA~em~eRL~~~l 265 (684)
T PRK11054 196 PLNPSQARAVVN--GEDSLLVLAGAGSGKTSVLVARAGWLLARGQ-----AQPEQILLLAFGRQAAEEMDERIRERL 265 (684)
T ss_pred CCCHHHHHHHhC--CCCCeEEEEeCCCCHHHHHHHHHHHHHHhCC-----CCHHHeEEEeccHHHHHHHHHHHHHhc
Confidence 589999999964 3457899999999999998887777665422 135679999999999999988887654
No 256
>PRK09183 transposase/IS protein; Provisional
Probab=96.18 E-value=0.053 Score=49.87 Aligned_cols=45 Identities=20% Similarity=0.248 Sum_probs=30.2
Q ss_pred hhcCCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcHHHHH
Q 010357 53 ILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCL 107 (512)
Q Consensus 53 ~~~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~ 107 (512)
+.++.++++.||+|+|||..+.......... +..++++. ...+..
T Consensus 99 i~~~~~v~l~Gp~GtGKThLa~al~~~a~~~---------G~~v~~~~-~~~l~~ 143 (259)
T PRK09183 99 IERNENIVLLGPSGVGKTHLAIALGYEAVRA---------GIKVRFTT-AADLLL 143 (259)
T ss_pred hhcCCeEEEEeCCCCCHHHHHHHHHHHHHHc---------CCeEEEEe-HHHHHH
Confidence 4467899999999999998876665444332 55566653 334443
No 257
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.18 E-value=0.02 Score=52.03 Aligned_cols=25 Identities=32% Similarity=0.603 Sum_probs=18.5
Q ss_pred CEEEEccCCChHhHHHHHHHHHHHhh
Q 010357 58 HVLVNAATGTGKTVAYLAPIINHLQS 83 (512)
Q Consensus 58 ~~lv~~pTGsGKT~~~~~~~~~~~~~ 83 (512)
=++|.||||||||.+. ..|..++.+
T Consensus 127 LILVTGpTGSGKSTTl-AamId~iN~ 151 (353)
T COG2805 127 LILVTGPTGSGKSTTL-AAMIDYINK 151 (353)
T ss_pred eEEEeCCCCCcHHHHH-HHHHHHHhc
Confidence 4789999999999664 445566655
No 258
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=96.17 E-value=0.043 Score=54.68 Aligned_cols=35 Identities=23% Similarity=0.233 Sum_probs=23.8
Q ss_pred CCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEc
Q 010357 57 RHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLV 100 (512)
Q Consensus 57 ~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~ 100 (512)
+.+++.||+|+|||-.+...+...... +.+++++.
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~~---------~~~v~yi~ 176 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRES---------GGKILYVR 176 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHc---------CCCEEEee
Confidence 458999999999997766544433322 45577764
No 259
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=96.15 E-value=0.16 Score=51.83 Aligned_cols=159 Identities=18% Similarity=0.178 Sum_probs=88.8
Q ss_pred HHHHHHHHhcCCCCCcHHHHHHHHHhhcCCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcHHHHH
Q 010357 28 TLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCL 107 (512)
Q Consensus 28 ~~~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~ 107 (512)
.+.+.|+..|++..+.+- .-...+.+-.++..|==.|||+... +++..+... ..|-++++.+|.+..++
T Consensus 230 r~~~~lk~~Fdi~~~s~~----~~~~fkqk~tVflVPRR~GKTwivv-~iI~~ll~s------~~Gi~IgytAH~~~ts~ 298 (738)
T PHA03368 230 RVERFLRTVFNTPLFSDA----AVRHFRQRATVFLVPRRHGKTWFLV-PLIALALAT------FRGIKIGYTAHIRKATE 298 (738)
T ss_pred HHHHHHHHHcCCccccHH----HHHHhhccceEEEecccCCchhhHH-HHHHHHHHh------CCCCEEEEEcCcHHHHH
Confidence 344445444454433321 1122345678889999999999776 333333221 23788999999999999
Q ss_pred HHHHHHHHHHhhcCCc-ceEEEeCCCchHHHHHHHcCC--CCEEEeCChHHHHHHhhcCCCcCCceeEEEEcchhHHHhc
Q 010357 108 QVYEILHKLLHRFHWI-VPGYVMGGENRSKEKARLRKG--ISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILEL 184 (512)
Q Consensus 108 q~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~--~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lV~DEah~l~~~ 184 (512)
...+++...++..... .+..+ .|+.. .-.+..+ ..|.++|- ...+..-=..++++|+|||+.+..
T Consensus 299 ~vF~eI~~~le~~f~~~~v~~v-kGe~I---~i~f~nG~kstI~FaSa-------rntNsiRGqtfDLLIVDEAqFIk~- 366 (738)
T PHA03368 299 PVFEEIGARLRQWFGASRVDHV-KGETI---SFSFPDGSRSTIVFASS-------HNTNGIRGQDFNLLFVDEANFIRP- 366 (738)
T ss_pred HHHHHHHHHHhhhcchhheeee-cCcEE---EEEecCCCccEEEEEec-------cCCCCccCCcccEEEEechhhCCH-
Confidence 9999988876632111 11111 12110 0001111 23444421 111212112689999999998754
Q ss_pred CchHHHHHHHHHhccCCCCCCCCCCcccccceeEEEEEEecc
Q 010357 185 GFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLN 226 (512)
Q Consensus 185 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~ 226 (512)
..+..++..+... ++++|++|.|-+
T Consensus 367 ---~al~~ilp~l~~~--------------n~k~I~ISS~Ns 391 (738)
T PHA03368 367 ---DAVQTIMGFLNQT--------------NCKIIFVSSTNT 391 (738)
T ss_pred ---HHHHHHHHHHhcc--------------CccEEEEecCCC
Confidence 4555555444332 678888888743
No 260
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=96.13 E-value=0.015 Score=62.04 Aligned_cols=71 Identities=21% Similarity=0.198 Sum_probs=57.5
Q ss_pred CCcHHHHHHHHHhhcCCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHHh
Q 010357 41 APTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLH 118 (512)
Q Consensus 41 ~~~~~Q~~~~~~~~~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~ 118 (512)
.+++-|++++.. ...+++|.|..|||||.+...-+...+..... ....+|+++-|+..|.++.+.+..+..
T Consensus 9 ~Ln~~Q~~av~~--~~g~~lV~AgaGSGKT~vl~~Ria~Li~~~~v-----~p~~IL~lTFT~kAA~Em~~Rl~~~~~ 79 (721)
T PRK11773 9 SLNDKQREAVAA--PLGNMLVLAGAGSGKTRVLVHRIAWLMQVENA-----SPYSIMAVTFTNKAAAEMRHRIEQLLG 79 (721)
T ss_pred hcCHHHHHHHhC--CCCCEEEEecCCCCHHHHHHHHHHHHHHcCCC-----ChhHeEeeeccHHHHHHHHHHHHHHhc
Confidence 589999999975 34589999999999999988888777654221 255699999999999999998888754
No 261
>PRK11823 DNA repair protein RadA; Provisional
Probab=96.10 E-value=0.038 Score=55.15 Aligned_cols=51 Identities=24% Similarity=0.255 Sum_probs=34.8
Q ss_pred CCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHH
Q 010357 56 GRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKL 116 (512)
Q Consensus 56 ~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 116 (512)
|.-+++.+++|+|||...+..+.....+ +.+++|+.-- +-..|+......+
T Consensus 80 Gs~~lI~G~pG~GKTtL~lq~a~~~a~~---------g~~vlYvs~E-es~~qi~~ra~rl 130 (446)
T PRK11823 80 GSVVLIGGDPGIGKSTLLLQVAARLAAA---------GGKVLYVSGE-ESASQIKLRAERL 130 (446)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHhc---------CCeEEEEEcc-ccHHHHHHHHHHc
Confidence 4567899999999998887777665432 5678888743 4445555544443
No 262
>PLN03025 replication factor C subunit; Provisional
Probab=96.10 E-value=0.09 Score=50.24 Aligned_cols=24 Identities=29% Similarity=0.423 Sum_probs=19.2
Q ss_pred CCEEEEccCCChHhHHHHHHHHHH
Q 010357 57 RHVLVNAATGTGKTVAYLAPIINH 80 (512)
Q Consensus 57 ~~~lv~~pTGsGKT~~~~~~~~~~ 80 (512)
.++++.||+|+|||..+...+.+.
T Consensus 35 ~~lll~Gp~G~GKTtla~~la~~l 58 (319)
T PLN03025 35 PNLILSGPPGTGKTTSILALAHEL 58 (319)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHH
Confidence 368999999999998876665554
No 263
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=96.08 E-value=0.019 Score=48.94 Aligned_cols=101 Identities=17% Similarity=0.195 Sum_probs=60.4
Q ss_pred CEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHHhhcCCcceEEEeCCCchHHH
Q 010357 58 HVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKE 137 (512)
Q Consensus 58 ~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 137 (512)
-.++.+|++||||...+..+..+... +.++++..|...- . ++...+. -..|.+
T Consensus 6 l~~i~gpM~SGKT~eLl~r~~~~~~~---------g~~v~vfkp~iD~----------R---~~~~~V~-Sr~G~~---- 58 (201)
T COG1435 6 LEFIYGPMFSGKTEELLRRARRYKEA---------GMKVLVFKPAIDT----------R---YGVGKVS-SRIGLS---- 58 (201)
T ss_pred EEEEEccCcCcchHHHHHHHHHHHHc---------CCeEEEEeccccc----------c---cccceee-eccCCc----
Confidence 35789999999998877776666554 7778998886331 0 0101111 111211
Q ss_pred HHHHcCCCCEEEeCChHHHHHHhhcCCCcCCceeEEEEcchhHHHhcCchHHHHHHHHHhc
Q 010357 138 KARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILG 198 (512)
Q Consensus 138 ~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lV~DEah~l~~~~~~~~~~~i~~~~~ 198 (512)
..-++|-++..+.+.+....... ..+.|.+|||+- |...+-..+..+.
T Consensus 59 ------~~A~~i~~~~~i~~~i~~~~~~~--~~~~v~IDEaQF-----~~~~~v~~l~~la 106 (201)
T COG1435 59 ------SEAVVIPSDTDIFDEIAALHEKP--PVDCVLIDEAQF-----FDEELVYVLNELA 106 (201)
T ss_pred ------ccceecCChHHHHHHHHhcccCC--CcCEEEEehhHh-----CCHHHHHHHHHHH
Confidence 12366667777777776532221 378999999997 4444444444444
No 264
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=96.08 E-value=0.06 Score=43.65 Aligned_cols=21 Identities=33% Similarity=0.363 Sum_probs=16.6
Q ss_pred EEEEccCCChHhHHHHHHHHH
Q 010357 59 VLVNAATGTGKTVAYLAPIIN 79 (512)
Q Consensus 59 ~lv~~pTGsGKT~~~~~~~~~ 79 (512)
+++.||+|+|||..+-..+-.
T Consensus 1 ill~G~~G~GKT~l~~~la~~ 21 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQY 21 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHhh
Confidence 589999999999876655544
No 265
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.06 E-value=0.11 Score=47.20 Aligned_cols=53 Identities=23% Similarity=0.319 Sum_probs=35.9
Q ss_pred HHhhcCC-----CEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHH
Q 010357 51 PVILSGR-----HVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKL 116 (512)
Q Consensus 51 ~~~~~~~-----~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 116 (512)
|.+..|+ .+++.+|+|+||++.+-..+.++ .-..|-+.+..|+..|.-+-.++
T Consensus 156 PqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEA-------------nSTFFSvSSSDLvSKWmGESEkL 213 (439)
T KOG0739|consen 156 PQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEA-------------NSTFFSVSSSDLVSKWMGESEKL 213 (439)
T ss_pred hhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhc-------------CCceEEeehHHHHHHHhccHHHH
Confidence 4455554 47999999999997765555443 23677778888877665444443
No 266
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=96.03 E-value=0.01 Score=60.85 Aligned_cols=124 Identities=19% Similarity=0.170 Sum_probs=77.6
Q ss_pred CCcHHHHHHHHHhhcC--CCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcHHHHHHHH-HHHHHHH
Q 010357 41 APTKVQAQAIPVILSG--RHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVY-EILHKLL 117 (512)
Q Consensus 41 ~~~~~Q~~~~~~~~~~--~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~-~~~~~~~ 117 (512)
..+|||.+..+.+... +.+++..++-+|||.+.+..+...+.. ....++++.||..++.++. ..+..++
T Consensus 16 ~~~Py~~eimd~~~~~~v~~Vv~~k~aQ~GkT~~~~n~~g~~i~~--------~P~~~l~v~Pt~~~a~~~~~~rl~Pmi 87 (557)
T PF05876_consen 16 DRTPYLREIMDALSDPSVREVVVMKSAQVGKTELLLNWIGYSIDQ--------DPGPMLYVQPTDDAAKDFSKERLDPMI 87 (557)
T ss_pred CCChhHHHHHHhcCCcCccEEEEEEcchhhHhHHHHhhceEEEEe--------CCCCEEEEEEcHHHHHHHHHHHHHHHH
Confidence 4789999999988754 578999999999999766665555444 2345999999999999987 5577776
Q ss_pred hhcCCcceEEEeC-----CCchHHHHHHHcCCCCEEEeCChHHHHHHhhcCCCcCCceeEEEEcchhHHH
Q 010357 118 HRFHWIVPGYVMG-----GENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRIL 182 (512)
Q Consensus 118 ~~~~~~~~~~~~~-----g~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lV~DEah~l~ 182 (512)
...+.+. ..+.. +.+... ...+. +..+.++..++- ..+.-..++++++||++.+.
T Consensus 88 ~~sp~l~-~~~~~~~~~~~~~t~~-~k~f~-gg~l~~~ga~S~-------~~l~s~~~r~~~~DEvD~~p 147 (557)
T PF05876_consen 88 RASPVLR-RKLSPSKSRDSGNTIL-YKRFP-GGFLYLVGANSP-------SNLRSRPARYLLLDEVDRYP 147 (557)
T ss_pred HhCHHHH-HHhCchhhcccCCchh-heecC-CCEEEEEeCCCC-------cccccCCcCEEEEechhhcc
Confidence 6443222 11111 111111 11111 233444432221 12222368899999999874
No 267
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=96.01 E-value=0.11 Score=48.45 Aligned_cols=55 Identities=18% Similarity=0.198 Sum_probs=35.6
Q ss_pred HhhcCCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHH
Q 010357 52 VILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHK 115 (512)
Q Consensus 52 ~~~~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~ 115 (512)
-+..|.-+++.|++|+|||..+...+.+.... .+..++|+.-- .-..+....+..
T Consensus 26 G~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~--------~g~~vl~iS~E-~~~~~~~~r~~~ 80 (271)
T cd01122 26 GLRKGELIILTAGTGVGKTTFLREYALDLITQ--------HGVRVGTISLE-EPVVRTARRLLG 80 (271)
T ss_pred EEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHh--------cCceEEEEEcc-cCHHHHHHHHHH
Confidence 44567788999999999998877766665432 25568887542 223444444433
No 268
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=95.99 E-value=0.094 Score=52.16 Aligned_cols=150 Identities=13% Similarity=0.118 Sum_probs=86.8
Q ss_pred CCcHHHHHHHHHhhc------C----CCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcHHHHHHHH
Q 010357 41 APTKVQAQAIPVILS------G----RHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVY 110 (512)
Q Consensus 41 ~~~~~Q~~~~~~~~~------~----~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~ 110 (512)
.+-|||+-++-.++- + +.+++..|-+-|||..+...+...+.-.. ..+....+++|+.+-+.+..
T Consensus 61 ~l~PwQkFiia~l~G~~~k~T~~rrf~e~fI~v~RkngKt~l~A~i~~~~~l~~~-----~~~~~~~i~A~s~~qa~~~F 135 (546)
T COG4626 61 SLEPWQKFIVAALFGFYDKQTGIRRFKEAFIFIPRKNGKSTLAAGIMMTALLLNW-----RSGAGIYILAPSVEQAANSF 135 (546)
T ss_pred ccchHHHHHHHHHhceeecCCCceEEEEEEEEEecCCchHHHHHHHHHHHHHhhh-----hcCCcEEEEeccHHHHHHhh
Confidence 389999999988872 2 34689999999999776533333322211 24778999999999999888
Q ss_pred HHHHHHHhhcCCcceEEEeCCCchHHHHHHHcCCCC---EEEeCChHHHHHHhh-cCCCcCCceeEEEEcchhHHHhcCc
Q 010357 111 EILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGIS---ILVATPGRLLDHLKH-TSSFLHTNLRWIIFDEADRILELGF 186 (512)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~---Iiv~Tp~~l~~~l~~-~~~~~~~~~~~lV~DEah~l~~~~~ 186 (512)
+.++......+ +.........+ |...--......+.. .+..+-.+..+.||||.|.....+
T Consensus 136 ~~ar~mv~~~~--------------~l~~~~~~q~~s~~i~~~~~~s~ik~~aa~~~~~Dg~~~~~~I~DEih~f~~~~- 200 (546)
T COG4626 136 NPARDMVKRDD--------------DLRDLCNVQTHSRTITHRKTDSTIKAVAADPNTVDGLNSVGAIIDELHLFGKQE- 200 (546)
T ss_pred HHHHHHHHhCc--------------chhhhhccccceeEEEecccceeeeeeccCCCcccCCCcceEEEehhhhhcCHH-
Confidence 88887765322 11111111111 221111112222221 122233356799999999754422
Q ss_pred hHHHHHHHHHhccCCCCCCCCCCcccccceeEEEEEEe
Q 010357 187 GKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSAT 224 (512)
Q Consensus 187 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT 224 (512)
..+..+...+..+. ..++++.|..
T Consensus 201 -~~~~~~~~g~~ar~-------------~~l~~~ITT~ 224 (546)
T COG4626 201 -DMYSEAKGGLGARP-------------EGLVVYITTS 224 (546)
T ss_pred -HHHHHHHhhhccCc-------------CceEEEEecC
Confidence 45555555554432 5666666653
No 269
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=95.99 E-value=0.033 Score=59.23 Aligned_cols=70 Identities=21% Similarity=0.140 Sum_probs=56.1
Q ss_pred CcHHHHHHHHHhhcCCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHHh
Q 010357 42 PTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLH 118 (512)
Q Consensus 42 ~~~~Q~~~~~~~~~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~ 118 (512)
+++-|++++.. ...+++|.|..|||||.+...-+...+..... ....+++++.|+..+.++.+.+...+.
T Consensus 2 Ln~~Q~~av~~--~~~~~~V~Ag~GSGKT~~L~~ri~~ll~~~~~-----~p~~IL~vTFt~~Aa~em~~Rl~~~l~ 71 (664)
T TIGR01074 2 LNPQQQEAVEY--VTGPCLVLAGAGSGKTRVITNKIAYLIQNCGY-----KARNIAAVTFTNKAAREMKERVAKTLG 71 (664)
T ss_pred CCHHHHHHHhC--CCCCEEEEecCCCCHHHHHHHHHHHHHHhcCC-----CHHHeEEEeccHHHHHHHHHHHHHHhC
Confidence 78899999865 34589999999999999988888887754221 245699999999999999988877653
No 270
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=95.98 E-value=0.08 Score=60.86 Aligned_cols=67 Identities=24% Similarity=0.254 Sum_probs=46.1
Q ss_pred CCCCCcHHHHHHHHHhhcC--CCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcHHHHHHHH
Q 010357 38 GFEAPTKVQAQAIPVILSG--RHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVY 110 (512)
Q Consensus 38 ~~~~~~~~Q~~~~~~~~~~--~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~ 110 (512)
++ .+++.|++|+..++.+ +-++|.|..|+|||.+.-. +...+..... ..+..++.++||..-+..+.
T Consensus 965 ~~-~Lt~~Q~~Av~~il~s~dr~~~I~G~AGTGKTT~l~~-v~~~~~~l~~----~~~~~V~glAPTgrAAk~L~ 1033 (1747)
T PRK13709 965 ME-GLTSGQRAATRMILESTDRFTVVQGYAGVGKTTQFRA-VMSAVNTLPE----SERPRVVGLGPTHRAVGEMR 1033 (1747)
T ss_pred cC-CCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHHHHH-HHHHHHHhhc----ccCceEEEECCcHHHHHHHH
Confidence 44 4999999999999875 4678999999999977432 2222221100 12456889999987766543
No 271
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.97 E-value=0.13 Score=47.36 Aligned_cols=24 Identities=21% Similarity=0.264 Sum_probs=19.0
Q ss_pred CCEEEEccCCChHhHHHHHHHHHH
Q 010357 57 RHVLVNAATGTGKTVAYLAPIINH 80 (512)
Q Consensus 57 ~~~lv~~pTGsGKT~~~~~~~~~~ 80 (512)
..+.+.+|+|+|||..+...+...
T Consensus 76 ~~i~~~G~~g~GKTtl~~~l~~~l 99 (270)
T PRK06731 76 QTIALIGPTGVGKTTTLAKMAWQF 99 (270)
T ss_pred CEEEEECCCCCcHHHHHHHHHHHH
Confidence 467899999999998877665544
No 272
>PRK13342 recombination factor protein RarA; Reviewed
Probab=95.93 E-value=0.076 Score=52.74 Aligned_cols=20 Identities=25% Similarity=0.250 Sum_probs=16.7
Q ss_pred CEEEEccCCChHhHHHHHHH
Q 010357 58 HVLVNAATGTGKTVAYLAPI 77 (512)
Q Consensus 58 ~~lv~~pTGsGKT~~~~~~~ 77 (512)
++++.||+|+|||..+...+
T Consensus 38 ~ilL~GppGtGKTtLA~~ia 57 (413)
T PRK13342 38 SMILWGPPGTGKTTLARIIA 57 (413)
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 68999999999997766544
No 273
>PTZ00293 thymidine kinase; Provisional
Probab=95.90 E-value=0.079 Score=46.41 Aligned_cols=39 Identities=15% Similarity=0.158 Sum_probs=28.7
Q ss_pred CCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcH
Q 010357 56 GRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTR 103 (512)
Q Consensus 56 ~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~ 103 (512)
|+-.++.||++||||.-.+..+...... +.+++++-|..
T Consensus 4 G~i~vi~GpMfSGKTteLLr~i~~y~~a---------g~kv~~~kp~~ 42 (211)
T PTZ00293 4 GTISVIIGPMFSGKTTELMRLVKRFTYS---------EKKCVVIKYSK 42 (211)
T ss_pred eEEEEEECCCCChHHHHHHHHHHHHHHc---------CCceEEEEecc
Confidence 4456889999999997666665555443 66789988874
No 274
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=95.90 E-value=0.056 Score=52.35 Aligned_cols=51 Identities=20% Similarity=0.204 Sum_probs=33.9
Q ss_pred cCCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHH
Q 010357 55 SGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHK 115 (512)
Q Consensus 55 ~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~ 115 (512)
.|.-+++.+++|+|||...+..+...... +.+++|+.-- +-..|+......
T Consensus 81 ~GslvLI~G~pG~GKStLllq~a~~~a~~---------g~~VlYvs~E-Es~~qi~~Ra~r 131 (372)
T cd01121 81 PGSVILIGGDPGIGKSTLLLQVAARLAKR---------GGKVLYVSGE-ESPEQIKLRADR 131 (372)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHhc---------CCeEEEEECC-cCHHHHHHHHHH
Confidence 34567899999999998887776655433 4568888654 334455444443
No 275
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=95.87 E-value=0.06 Score=55.04 Aligned_cols=46 Identities=17% Similarity=0.117 Sum_probs=27.9
Q ss_pred CCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcHHHHHHHH
Q 010357 57 RHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVY 110 (512)
Q Consensus 57 ~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~ 110 (512)
+.+++.|++|+|||......+.+.... ..+.+++++ +...+..+..
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~-------~~g~~V~Yi-taeef~~el~ 360 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRL-------YPGTRVRYV-SSEEFTNEFI 360 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHh-------CCCCeEEEe-eHHHHHHHHH
Confidence 348999999999997766555443322 124456665 4445554433
No 276
>PRK08939 primosomal protein DnaI; Reviewed
Probab=95.87 E-value=0.053 Score=51.10 Aligned_cols=27 Identities=15% Similarity=0.102 Sum_probs=21.5
Q ss_pred CCCEEEEccCCChHhHHHHHHHHHHHh
Q 010357 56 GRHVLVNAATGTGKTVAYLAPIINHLQ 82 (512)
Q Consensus 56 ~~~~lv~~pTGsGKT~~~~~~~~~~~~ 82 (512)
++++++.||+|+|||..+...+.+...
T Consensus 156 ~~gl~L~G~~G~GKThLa~Aia~~l~~ 182 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYLLAAIANELAK 182 (306)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 457999999999999887766666553
No 277
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=95.85 E-value=0.094 Score=48.49 Aligned_cols=23 Identities=26% Similarity=0.202 Sum_probs=18.5
Q ss_pred CCEEEEccCCChHhHHHHHHHHH
Q 010357 57 RHVLVNAATGTGKTVAYLAPIIN 79 (512)
Q Consensus 57 ~~~lv~~pTGsGKT~~~~~~~~~ 79 (512)
.++++.||+|+|||..+-..+..
T Consensus 43 ~~vll~GppGtGKTtlA~~ia~~ 65 (261)
T TIGR02881 43 LHMIFKGNPGTGKTTVARILGKL 65 (261)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHH
Confidence 47899999999999887665544
No 278
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=95.84 E-value=0.037 Score=51.67 Aligned_cols=25 Identities=20% Similarity=0.239 Sum_probs=19.5
Q ss_pred CCEEEEccCCChHhHHHHHHHHHHH
Q 010357 57 RHVLVNAATGTGKTVAYLAPIINHL 81 (512)
Q Consensus 57 ~~~lv~~pTGsGKT~~~~~~~~~~~ 81 (512)
+.++++||||+|||.+....+....
T Consensus 195 ~vi~~vGptGvGKTTt~~kLa~~~~ 219 (282)
T TIGR03499 195 GVIALVGPTGVGKTTTLAKLAARFV 219 (282)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3578899999999988776665543
No 279
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=95.83 E-value=0.12 Score=49.88 Aligned_cols=26 Identities=23% Similarity=0.314 Sum_probs=20.2
Q ss_pred CCEEEEccCCChHhHHHHHHHHHHHh
Q 010357 57 RHVLVNAATGTGKTVAYLAPIINHLQ 82 (512)
Q Consensus 57 ~~~lv~~pTGsGKT~~~~~~~~~~~~ 82 (512)
.|+++.|+||+|||.+.-..+-+...
T Consensus 43 ~n~~iyG~~GTGKT~~~~~v~~~l~~ 68 (366)
T COG1474 43 SNIIIYGPTGTGKTATVKFVMEELEE 68 (366)
T ss_pred ccEEEECCCCCCHhHHHHHHHHHHHh
Confidence 46999999999999887666555433
No 280
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=95.82 E-value=0.028 Score=49.42 Aligned_cols=22 Identities=27% Similarity=0.261 Sum_probs=17.5
Q ss_pred CEEEEccCCChHhHHHHHHHHH
Q 010357 58 HVLVNAATGTGKTVAYLAPIIN 79 (512)
Q Consensus 58 ~~lv~~pTGsGKT~~~~~~~~~ 79 (512)
+++++||+|+|||..+.+.+-+
T Consensus 52 h~lf~GPPG~GKTTLA~IIA~e 73 (233)
T PF05496_consen 52 HMLFYGPPGLGKTTLARIIANE 73 (233)
T ss_dssp EEEEESSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCccchhHHHHHHHhc
Confidence 6899999999999776555443
No 281
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=95.81 E-value=0.11 Score=51.27 Aligned_cols=23 Identities=30% Similarity=0.361 Sum_probs=18.6
Q ss_pred CCEEEEccCCChHhHHHHHHHHH
Q 010357 57 RHVLVNAATGTGKTVAYLAPIIN 79 (512)
Q Consensus 57 ~~~lv~~pTGsGKT~~~~~~~~~ 79 (512)
.++++.||+|+|||.+.-..+-+
T Consensus 56 ~~~lI~G~~GtGKT~l~~~v~~~ 78 (394)
T PRK00411 56 LNVLIYGPPGTGKTTTVKKVFEE 78 (394)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999886655544
No 282
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=95.76 E-value=0.29 Score=50.33 Aligned_cols=71 Identities=15% Similarity=0.257 Sum_probs=51.0
Q ss_pred CcHHHHHHHHHhh---cCCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHHh
Q 010357 42 PTKVQAQAIPVIL---SGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLH 118 (512)
Q Consensus 42 ~~~~Q~~~~~~~~---~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~ 118 (512)
|.|.-.+=++.++ +.+-.++.+|=|.|||.+..+.+...+.. .+.++++.+|...-+.++.+.+...++
T Consensus 170 ~~~~~~~~id~~~~~fkq~~tV~taPRqrGKS~iVgi~l~~La~f--------~Gi~IlvTAH~~~ts~evF~rv~~~le 241 (752)
T PHA03333 170 PSPRTLREIDRIFDEYGKCYTAATVPRRCGKTTIMAIILAAMISF--------LEIDIVVQAQRKTMCLTLYNRVETVVH 241 (752)
T ss_pred CChhhHHHHHHHHHHHhhcceEEEeccCCCcHHHHHHHHHHHHHh--------cCCeEEEECCChhhHHHHHHHHHHHHH
Confidence 3444444444433 55678899999999999877665544432 256799999999999999988888876
Q ss_pred hc
Q 010357 119 RF 120 (512)
Q Consensus 119 ~~ 120 (512)
..
T Consensus 242 ~l 243 (752)
T PHA03333 242 AY 243 (752)
T ss_pred Hh
Confidence 43
No 283
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=95.76 E-value=0.068 Score=50.91 Aligned_cols=41 Identities=15% Similarity=0.032 Sum_probs=31.8
Q ss_pred CCcHHHHHHHHHhhcCC----CEEEEccCCChHhHHHHHHHHHHH
Q 010357 41 APTKVQAQAIPVILSGR----HVLVNAATGTGKTVAYLAPIINHL 81 (512)
Q Consensus 41 ~~~~~Q~~~~~~~~~~~----~~lv~~pTGsGKT~~~~~~~~~~~ 81 (512)
..+|||...+..+.... -.++.||.|.|||..+...+...+
T Consensus 3 ~~yPWl~~~~~~~~~~~r~~ha~Lf~G~~G~GK~~~A~~~A~~ll 47 (328)
T PRK05707 3 EIYPWQQSLWQQLAGRGRHPHAYLLHGPAGIGKRALAERLAAALL 47 (328)
T ss_pred cCCCCcHHHHHHHHHCCCcceeeeeECCCCCCHHHHHHHHHHHHc
Confidence 36899999998887543 368999999999988776665544
No 284
>PF14617 CMS1: U3-containing 90S pre-ribosomal complex subunit
Probab=95.68 E-value=0.035 Score=50.09 Aligned_cols=86 Identities=20% Similarity=0.237 Sum_probs=59.4
Q ss_pred CCceEEEEcCcHHHHHHHHHHHHHHHhhcCCcceEEEeCC-CchHHHHHHHcC-CCCEEEeCChHHHHHHhhcCCCcCCc
Q 010357 92 SGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGG-ENRSKEKARLRK-GISILVATPGRLLDHLKHTSSFLHTN 169 (512)
Q Consensus 92 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~-~~~Iiv~Tp~~l~~~l~~~~~~~~~~ 169 (512)
..+.+|||+.+---|.++.+.++.+-.. ...+.-++.- ...+++...+.. ...|.|+||+|+..++.. ..+.+++
T Consensus 125 gsP~~lvvs~SalRa~dl~R~l~~~~~k--~~~v~KLFaKH~Kl~eqv~~L~~~~~~i~vGTP~Rl~kLle~-~~L~l~~ 201 (252)
T PF14617_consen 125 GSPHVLVVSSSALRAADLIRALRSFKGK--DCKVAKLFAKHIKLEEQVKLLKKTRVHIAVGTPGRLSKLLEN-GALSLSN 201 (252)
T ss_pred CCCEEEEEcchHHHHHHHHHHHHhhccC--CchHHHHHHhhccHHHHHHHHHhCCceEEEeChHHHHHHHHc-CCCCccc
Confidence 4577889888866677777777665210 1111122222 245556666664 489999999999999966 7788899
Q ss_pred eeEEEEcchhH
Q 010357 170 LRWIIFDEADR 180 (512)
Q Consensus 170 ~~~lV~DEah~ 180 (512)
+.+||||--|.
T Consensus 202 l~~ivlD~s~~ 212 (252)
T PF14617_consen 202 LKRIVLDWSYL 212 (252)
T ss_pred CeEEEEcCCcc
Confidence 99999998874
No 285
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=95.67 E-value=0.022 Score=49.08 Aligned_cols=45 Identities=22% Similarity=0.320 Sum_probs=30.2
Q ss_pred hcCCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcHHHHHH
Q 010357 54 LSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQ 108 (512)
Q Consensus 54 ~~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q 108 (512)
-+++++++.||+|+|||..+...+.+.+.. +..++|+ +..+|...
T Consensus 45 ~~~~~l~l~G~~G~GKThLa~ai~~~~~~~---------g~~v~f~-~~~~L~~~ 89 (178)
T PF01695_consen 45 ENGENLILYGPPGTGKTHLAVAIANEAIRK---------GYSVLFI-TASDLLDE 89 (178)
T ss_dssp SC--EEEEEESTTSSHHHHHHHHHHHHHHT---------T--EEEE-EHHHHHHH
T ss_pred ccCeEEEEEhhHhHHHHHHHHHHHHHhccC---------CcceeEe-ecCceecc
Confidence 357889999999999999987777666654 5556665 44455544
No 286
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=95.66 E-value=0.1 Score=55.11 Aligned_cols=20 Identities=20% Similarity=0.248 Sum_probs=16.8
Q ss_pred CEEEEccCCChHhHHHHHHH
Q 010357 58 HVLVNAATGTGKTVAYLAPI 77 (512)
Q Consensus 58 ~~lv~~pTGsGKT~~~~~~~ 77 (512)
++++.||+|+|||..+...+
T Consensus 54 slLL~GPpGtGKTTLA~aIA 73 (725)
T PRK13341 54 SLILYGPPGVGKTTLARIIA 73 (725)
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 78999999999997766554
No 287
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=95.60 E-value=0.14 Score=60.45 Aligned_cols=62 Identities=32% Similarity=0.384 Sum_probs=45.9
Q ss_pred CCcHHHHHHHHHhhcC--CCEEEEccCCChHhHHHH---HHHHHHHhhcCCCCCCCCCceEEEEcCcHHHHHHHH
Q 010357 41 APTKVQAQAIPVILSG--RHVLVNAATGTGKTVAYL---APIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVY 110 (512)
Q Consensus 41 ~~~~~Q~~~~~~~~~~--~~~lv~~pTGsGKT~~~~---~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~ 110 (512)
.+++.|++|+..++.+ +-++|+|+.|+|||.+.. -++.+.+.. .+..++.++||..-+.++.
T Consensus 1019 ~Lt~~Q~~Ai~~il~~~~~~~~i~G~AGtGKTt~l~~~~~~i~~~~~~--------~g~~v~glApT~~Aa~~L~ 1085 (1960)
T TIGR02760 1019 RLTHGQKQAIHLIISTKDRFVAVQGLAGVGKTTMLESRYKPVLQAFES--------EQLQVIGLAPTHEAVGELK 1085 (1960)
T ss_pred CCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHhHHHHHHHHHHHHHh--------cCCeEEEEeChHHHHHHHH
Confidence 4999999999998865 456789999999997762 334444432 3567999999987666553
No 288
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=95.60 E-value=0.15 Score=49.53 Aligned_cols=47 Identities=15% Similarity=0.167 Sum_probs=31.2
Q ss_pred ceeEEEEcchhHHHhc-CchHHHHHHHHHhccCCCCCCCCCCcccccceeEEEEEEecchhh
Q 010357 169 NLRWIIFDEADRILEL-GFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKV 229 (512)
Q Consensus 169 ~~~~lV~DEah~l~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~ 229 (512)
+++++++|.++.+.+. .....+-.++..+... ..|+++.|..+|..+
T Consensus 175 ~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~--------------~kqIvltsdr~P~~l 222 (408)
T COG0593 175 SLDLLLIDDIQFLAGKERTQEEFFHTFNALLEN--------------GKQIVLTSDRPPKEL 222 (408)
T ss_pred ccCeeeechHhHhcCChhHHHHHHHHHHHHHhc--------------CCEEEEEcCCCchhh
Confidence 5789999999987664 3445555566655542 347777777766543
No 289
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family. This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354.
Probab=95.56 E-value=0.066 Score=52.97 Aligned_cols=145 Identities=16% Similarity=0.203 Sum_probs=80.0
Q ss_pred CEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcHH-HHHHHHHHHHHHHhhcCCcceEEEeCCCchHH
Q 010357 58 HVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRE-LCLQVYEILHKLLHRFHWIVPGYVMGGENRSK 136 (512)
Q Consensus 58 ~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~-L~~q~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 136 (512)
-.++.|..|||||.+....++..+.... .+.+++++-|+.. |..-+...+...+..++.... ...... ..
T Consensus 3 ~~i~~GgrgSGKS~~~~~~~~~~~~~~~------~~~~~~~~r~~~~sl~~sv~~~l~~~i~~~g~~~~--~~~~~~-~~ 73 (396)
T TIGR01547 3 EIIAKGGRRSGKTFAIALKLVEKLAINK------KQQNILAARKVQNSIRDSVFKDIENLLSIEGINYE--FKKSKS-SM 73 (396)
T ss_pred eEEEeCCCCcccHHHHHHHHHHHHHhcC------CCcEEEEEehhhhHHHHHHHHHHHHHHHHcCChhh--eeecCC-cc
Confidence 3578999999999998877776665531 3567898989886 666677777777665542110 100000 00
Q ss_pred HHHHHcC-CCCEEEeCC-hHHHHHHhhcCCCcCCceeEEEEcchhHHHhcCchHHHHHHHHHhccCCCCCCCCCCccccc
Q 010357 137 EKARLRK-GISILVATP-GRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNV 214 (512)
Q Consensus 137 ~~~~~~~-~~~Iiv~Tp-~~l~~~l~~~~~~~~~~~~~lV~DEah~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 214 (512)
... +.. +..|++..- +...+ +. ....++++.+|||..+.. ..+..+..+++...
T Consensus 74 ~i~-~~~~g~~i~f~g~~d~~~~-ik-----~~~~~~~~~idEa~~~~~----~~~~~l~~rlr~~~------------- 129 (396)
T TIGR01547 74 EIK-ILNTGKKFIFKGLNDKPNK-LK-----SGAGIAIIWFEEASQLTF----EDIKELIPRLRETG------------- 129 (396)
T ss_pred EEE-ecCCCeEEEeecccCChhH-hh-----CcceeeeehhhhhhhcCH----HHHHHHHHHhhccC-------------
Confidence 000 111 233454443 22211 11 122468999999998643 35555555543210
Q ss_pred ceeEEEEEEecchhhHHHHHh
Q 010357 215 KRQNLLLSATLNEKVNHLAKI 235 (512)
Q Consensus 215 ~~~~i~~SAT~~~~~~~~~~~ 235 (512)
....+++|.||......+...
T Consensus 130 ~~~~i~~t~NP~~~~~w~~~~ 150 (396)
T TIGR01547 130 GKKFIIFSSNPESPLHWVKKR 150 (396)
T ss_pred CccEEEEEcCcCCCccHHHHH
Confidence 112478888886543333333
No 290
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=95.52 E-value=0.042 Score=51.29 Aligned_cols=22 Identities=23% Similarity=0.202 Sum_probs=17.5
Q ss_pred CEEEEccCCChHhHHHHHHHHH
Q 010357 58 HVLVNAATGTGKTVAYLAPIIN 79 (512)
Q Consensus 58 ~~lv~~pTGsGKT~~~~~~~~~ 79 (512)
++|+++|.|+|||..+-+.+..
T Consensus 164 SmIlWGppG~GKTtlArlia~t 185 (554)
T KOG2028|consen 164 SMILWGPPGTGKTTLARLIAST 185 (554)
T ss_pred ceEEecCCCCchHHHHHHHHhh
Confidence 6899999999999776555443
No 291
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=95.50 E-value=0.34 Score=44.98 Aligned_cols=35 Identities=23% Similarity=0.372 Sum_probs=24.2
Q ss_pred CcHHHHHHHHHhh----cCC-CEEEEccCCChHhHHHHHH
Q 010357 42 PTKVQAQAIPVIL----SGR-HVLVNAATGTGKTVAYLAP 76 (512)
Q Consensus 42 ~~~~Q~~~~~~~~----~~~-~~lv~~pTGsGKT~~~~~~ 76 (512)
+++.+++++..+. .+. .+++.||+|+|||..+-..
T Consensus 24 ~~~~~~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~~~l 63 (269)
T TIGR03015 24 PSKGHKRAMAYLEYGLSQREGFILITGEVGAGKTTLIRNL 63 (269)
T ss_pred CCHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHH
Confidence 5566666665543 233 5789999999999776544
No 292
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=95.48 E-value=0.14 Score=49.43 Aligned_cols=23 Identities=39% Similarity=0.469 Sum_probs=18.9
Q ss_pred CEEEEccCCChHhHHHHHHHHHH
Q 010357 58 HVLVNAATGTGKTVAYLAPIINH 80 (512)
Q Consensus 58 ~~lv~~pTGsGKT~~~~~~~~~~ 80 (512)
++++.||+|+|||..+...+...
T Consensus 38 ~lll~Gp~GtGKT~la~~~~~~l 60 (337)
T PRK12402 38 HLLVQGPPGSGKTAAVRALAREL 60 (337)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999998876665544
No 293
>PRK04195 replication factor C large subunit; Provisional
Probab=95.48 E-value=0.1 Score=53.00 Aligned_cols=24 Identities=25% Similarity=0.268 Sum_probs=18.9
Q ss_pred CCCEEEEccCCChHhHHHHHHHHH
Q 010357 56 GRHVLVNAATGTGKTVAYLAPIIN 79 (512)
Q Consensus 56 ~~~~lv~~pTGsGKT~~~~~~~~~ 79 (512)
.+.+++.||+|+|||..+...+-+
T Consensus 39 ~~~lLL~GppG~GKTtla~ala~e 62 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAHALAND 62 (482)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999877655443
No 294
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=95.48 E-value=0.16 Score=52.95 Aligned_cols=143 Identities=18% Similarity=0.207 Sum_probs=86.0
Q ss_pred CCCCcHHHHHHHHHhhcCC--CEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHH
Q 010357 39 FEAPTKVQAQAIPVILSGR--HVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKL 116 (512)
Q Consensus 39 ~~~~~~~Q~~~~~~~~~~~--~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 116 (512)
.+++..-|.+.+..+++.+ -+++.|.=|=|||.+.-+.+...... . ....+++.+|+.+-++.....+.+-
T Consensus 212 ~T~dQ~~~l~~~~~l~~~~~~~~vlTAdRGRGKSA~lGi~~~~~~~~-~------~~~~iiVTAP~~~nv~~Lf~fa~~~ 284 (758)
T COG1444 212 LTEDQAEALEILERLLDAPKRALVLTADRGRGKSAALGIALAAAARL-A------GSVRIIVTAPTPANVQTLFEFAGKG 284 (758)
T ss_pred cChhHHHHHHHHHHHHcCCCceEEEEcCCCCcHhHHHhHHHHHHHHh-c------CCceEEEeCCCHHHHHHHHHHHHHh
Confidence 3445555556666666543 57889999999999988766333322 1 0346999999999888888877776
Q ss_pred HhhcCCcceEEEeC-CCchHHHHHHHcCCCCEEEeCChHHHHHHhhcCCCcCCceeEEEEcchhHHHhcCchHHHHHHHH
Q 010357 117 LHRFHWIVPGYVMG-GENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILD 195 (512)
Q Consensus 117 ~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lV~DEah~l~~~~~~~~~~~i~~ 195 (512)
+...|......... |... ....+...|=+.+|.... ..-++||+|||=.+ --..+..++.
T Consensus 285 l~~lg~~~~v~~d~~g~~~----~~~~~~~~i~y~~P~~a~-----------~~~DllvVDEAAaI----plplL~~l~~ 345 (758)
T COG1444 285 LEFLGYKRKVAPDALGEIR----EVSGDGFRIEYVPPDDAQ-----------EEADLLVVDEAAAI----PLPLLHKLLR 345 (758)
T ss_pred HHHhCCcccccccccccee----eecCCceeEEeeCcchhc-----------ccCCEEEEehhhcC----ChHHHHHHHh
Confidence 66655322111111 1000 000111234455554432 02578999999865 3455666665
Q ss_pred HhccCCCCCCCCCCcccccceeEEEEEEecc
Q 010357 196 ILGSRNIGSIGEGNEVSNVKRQNLLLSATLN 226 (512)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~ 226 (512)
.+ +.++||.|+.
T Consensus 346 ~~-------------------~rv~~sTTIh 357 (758)
T COG1444 346 RF-------------------PRVLFSTTIH 357 (758)
T ss_pred hc-------------------CceEEEeeec
Confidence 43 4599999985
No 295
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=95.48 E-value=0.19 Score=49.75 Aligned_cols=23 Identities=17% Similarity=0.215 Sum_probs=18.5
Q ss_pred CEEEEccCCChHhHHHHHHHHHH
Q 010357 58 HVLVNAATGTGKTVAYLAPIINH 80 (512)
Q Consensus 58 ~~lv~~pTGsGKT~~~~~~~~~~ 80 (512)
.++++|++|+|||.++...+...
T Consensus 97 vI~lvG~~GsGKTTtaakLA~~L 119 (437)
T PRK00771 97 TIMLVGLQGSGKTTTAAKLARYF 119 (437)
T ss_pred EEEEECCCCCcHHHHHHHHHHHH
Confidence 46889999999998887766543
No 296
>PRK05973 replicative DNA helicase; Provisional
Probab=95.44 E-value=0.032 Score=50.11 Aligned_cols=84 Identities=25% Similarity=0.301 Sum_probs=51.3
Q ss_pred cCCCCHHHHHHHHHhcCCCCCcHHHHH---------HHHHhhcCCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCC
Q 010357 22 SLGLHSTLCDQLRERLGFEAPTKVQAQ---------AIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSS 92 (512)
Q Consensus 22 ~~~l~~~~~~~l~~~~~~~~~~~~Q~~---------~~~~~~~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~ 92 (512)
+.++|+-+-+.-.+ -||.+....... ....+..|.-++|.|++|+|||..++..+.+...+
T Consensus 22 ~~~~~~~~~~~a~~-~g~~~w~~~~~~~~~~~p~~~l~GGl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~--------- 91 (237)
T PRK05973 22 NIPLHEALDRIAAE-EGFSSWSLLAAKAAATTPAEELFSQLKPGDLVLLGARPGHGKTLLGLELAVEAMKS--------- 91 (237)
T ss_pred CCcHHHHHHHHHHH-hccchHHHHHHhccCCCCHHHhcCCCCCCCEEEEEeCCCCCHHHHHHHHHHHHHhc---------
Confidence 34555444444433 377644333332 22334456678999999999999988888777654
Q ss_pred CceEEEEcCcHHHHHHHHHHHHHH
Q 010357 93 GTFALVLVPTRELCLQVYEILHKL 116 (512)
Q Consensus 93 ~~~~lil~Pt~~L~~q~~~~~~~~ 116 (512)
+.+++|++-- +=..|+.+.+..+
T Consensus 92 Ge~vlyfSlE-es~~~i~~R~~s~ 114 (237)
T PRK05973 92 GRTGVFFTLE-YTEQDVRDRLRAL 114 (237)
T ss_pred CCeEEEEEEe-CCHHHHHHHHHHc
Confidence 6668887543 2245555555544
No 297
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily.
Probab=95.38 E-value=0.05 Score=58.36 Aligned_cols=71 Identities=21% Similarity=0.198 Sum_probs=57.0
Q ss_pred CCcHHHHHHHHHhhcCCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHHh
Q 010357 41 APTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLH 118 (512)
Q Consensus 41 ~~~~~Q~~~~~~~~~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~ 118 (512)
.+++-|++++.. ...+++|.|..|||||.+...-+...+.... -...++|+++-|+..+.++.+.+..++.
T Consensus 4 ~Ln~~Q~~av~~--~~g~~lV~AgaGSGKT~~l~~ria~Li~~~~-----i~P~~IL~lTFT~kAA~em~~Rl~~~~~ 74 (726)
T TIGR01073 4 HLNPEQREAVKT--TEGPLLIMAGAGSGKTRVLTHRIAHLIAEKN-----VAPWNILAITFTNKAAREMKERVEKLLG 74 (726)
T ss_pred ccCHHHHHHHhC--CCCCEEEEeCCCCCHHHHHHHHHHHHHHcCC-----CCHHHeeeeeccHHHHHHHHHHHHHHhc
Confidence 588999999975 3458999999999999998888887775422 1245699999999999999888877643
No 298
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=95.38 E-value=0.23 Score=44.76 Aligned_cols=51 Identities=16% Similarity=0.178 Sum_probs=34.3
Q ss_pred hcCCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcHHHHHHHHHHHH
Q 010357 54 LSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILH 114 (512)
Q Consensus 54 ~~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~ 114 (512)
-.+..+++.+++|+|||..++..+...+.+ +.++++++... -..+..+.+.
T Consensus 22 ~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~---------g~~~~yi~~e~-~~~~~~~~~~ 72 (230)
T PRK08533 22 PAGSLILIEGDESTGKSILSQRLAYGFLQN---------GYSVSYVSTQL-TTTEFIKQMM 72 (230)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHhC---------CCcEEEEeCCC-CHHHHHHHHH
Confidence 356778999999999998877766665543 56688887442 2334444443
No 299
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=95.36 E-value=0.18 Score=47.72 Aligned_cols=42 Identities=29% Similarity=0.298 Sum_probs=31.7
Q ss_pred CCCcHHHHHHHHHhh----cCC---CEEEEccCCChHhHHHHHHHHHHH
Q 010357 40 EAPTKVQAQAIPVIL----SGR---HVLVNAATGTGKTVAYLAPIINHL 81 (512)
Q Consensus 40 ~~~~~~Q~~~~~~~~----~~~---~~lv~~pTGsGKT~~~~~~~~~~~ 81 (512)
..++|||..++..+. +++ -.++.||.|+||+..+...+...+
T Consensus 3 ~~~yPW~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~Ll 51 (319)
T PRK08769 3 SAFSPWQQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHVL 51 (319)
T ss_pred ccccccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHh
Confidence 458899999987765 333 378999999999988766655544
No 300
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.35 E-value=0.19 Score=50.01 Aligned_cols=22 Identities=18% Similarity=0.084 Sum_probs=18.1
Q ss_pred EEEEccCCChHhHHHHHHHHHH
Q 010357 59 VLVNAATGTGKTVAYLAPIINH 80 (512)
Q Consensus 59 ~lv~~pTGsGKT~~~~~~~~~~ 80 (512)
.++.||.|+|||.++...+...
T Consensus 43 ~Lf~GP~GtGKTTlAriLAk~L 64 (484)
T PRK14956 43 YIFFGPRGVGKTTIARILAKRL 64 (484)
T ss_pred EEEECCCCCCHHHHHHHHHHhc
Confidence 6999999999998877765543
No 301
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=95.35 E-value=0.14 Score=48.39 Aligned_cols=57 Identities=26% Similarity=0.343 Sum_probs=36.8
Q ss_pred CcHHHHHHHHHhh-cCCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcHHH
Q 010357 42 PTKVQAQAIPVIL-SGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTREL 105 (512)
Q Consensus 42 ~~~~Q~~~~~~~~-~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L 105 (512)
+++.|.+.+..+. .+.+++++|+||||||...-. ++..+.... ...+++.+=.+.+|
T Consensus 129 ~~~~~~~~L~~~v~~~~nilI~G~tGSGKTTll~a-L~~~i~~~~------~~~rivtiEd~~El 186 (323)
T PRK13833 129 MTEAQASVIRSAIDSRLNIVISGGTGSGKTTLANA-VIAEIVASA------PEDRLVILEDTAEI 186 (323)
T ss_pred CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHHHHH-HHHHHhcCC------CCceEEEecCCccc
Confidence 6678887776554 567899999999999966533 333332111 13456666666665
No 302
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=95.34 E-value=0.078 Score=55.22 Aligned_cols=137 Identities=18% Similarity=0.162 Sum_probs=76.2
Q ss_pred cCCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHHhhcCCcceEEEeCCCch
Q 010357 55 SGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENR 134 (512)
Q Consensus 55 ~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~g~~~ 134 (512)
..+=+++++|.|+|||.....++. .. ..+..+.++.=. +-.++-+..+..+....+...+. -+++.
T Consensus 36 ~~RL~li~APAGfGKttl~aq~~~-~~---------~~~~~v~Wlsld-e~dndp~rF~~yLi~al~~~~p~---~~~~a 101 (894)
T COG2909 36 DYRLILISAPAGFGKTTLLAQWRE-LA---------ADGAAVAWLSLD-ESDNDPARFLSYLIAALQQATPT---LGDEA 101 (894)
T ss_pred CceEEEEeCCCCCcHHHHHHHHHH-hc---------CcccceeEeecC-CccCCHHHHHHHHHHHHHHhCcc---ccHHH
Confidence 345579999999999988777664 22 125556666533 22344455555554432211111 11111
Q ss_pred HHHHHHHcCCCCEEEeCChHHHHHHhhcCCCcCCceeEEEEcchhHHHhcCchHHHHHHHHHhccCCCCCCCCCCccccc
Q 010357 135 SKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNV 214 (512)
Q Consensus 135 ~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lV~DEah~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 214 (512)
.. ...+ +.-+.--..+..++...... .+.=++|+|..|.+.+......+..++++.|.
T Consensus 102 ~~---l~q~--~~~~~l~~l~~~L~~Ela~~--~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~--------------- 159 (894)
T COG2909 102 QT---LLQK--HQYVSLESLLSSLLNELASY--EGPLYLVLDDYHLISDPALHEALRFLLKHAPE--------------- 159 (894)
T ss_pred HH---HHHh--cccccHHHHHHHHHHHHHhh--cCceEEEeccccccCcccHHHHHHHHHHhCCC---------------
Confidence 11 1111 11111111111122111111 12348999999999999899999999999987
Q ss_pred ceeEEEEEEecch
Q 010357 215 KRQNLLLSATLNE 227 (512)
Q Consensus 215 ~~~~i~~SAT~~~ 227 (512)
+...++.|-+-|+
T Consensus 160 ~l~lvv~SR~rP~ 172 (894)
T COG2909 160 NLTLVVTSRSRPQ 172 (894)
T ss_pred CeEEEEEeccCCC
Confidence 8888888887653
No 303
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=95.34 E-value=0.19 Score=49.20 Aligned_cols=23 Identities=30% Similarity=0.372 Sum_probs=18.0
Q ss_pred CCEEEEccCCChHhHHHHHHHHH
Q 010357 57 RHVLVNAATGTGKTVAYLAPIIN 79 (512)
Q Consensus 57 ~~~lv~~pTGsGKT~~~~~~~~~ 79 (512)
.++++.||+|+|||.+.-..+.+
T Consensus 41 ~~i~I~G~~GtGKT~l~~~~~~~ 63 (365)
T TIGR02928 41 SNVFIYGKTGTGKTAVTKYVMKE 63 (365)
T ss_pred CcEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999776554433
No 304
>PRK05580 primosome assembly protein PriA; Validated
Probab=95.32 E-value=0.12 Score=54.72 Aligned_cols=97 Identities=12% Similarity=0.159 Sum_probs=76.0
Q ss_pred cCCchHHHHHHHHHhhhccccCceEEEEeecchhhhhHHHhhhhhcCCCCCCChhHHHhhhhccceeeecCCCCHHHHHH
Q 010357 298 PCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRT 377 (512)
Q Consensus 298 ~~~~k~~~l~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~l~g~~~~~~r~~ 377 (512)
..+.|.......+...+. .+.++||.++++..+..+.+.+++.. +..+..+||+++..+|..
T Consensus 171 TGSGKT~v~l~~i~~~l~--~g~~vLvLvPt~~L~~Q~~~~l~~~f----------------g~~v~~~~s~~s~~~r~~ 232 (679)
T PRK05580 171 TGSGKTEVYLQAIAEVLA--QGKQALVLVPEIALTPQMLARFRARF----------------GAPVAVLHSGLSDGERLD 232 (679)
T ss_pred CCChHHHHHHHHHHHHHH--cCCeEEEEeCcHHHHHHHHHHHHHHh----------------CCCEEEEECCCCHHHHHH
Confidence 345687777766666543 36799999999999999999887642 567889999999999999
Q ss_pred HHHhhhcCCCcEEEeecccccCCCCCCCcEEEEeCC
Q 010357 378 TFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDS 413 (512)
Q Consensus 378 ~~~~f~~~~~~vLvaT~~~~~Gldip~~~~VI~~~~ 413 (512)
......+|+.+|+|+|..... +.+.++.+||....
T Consensus 233 ~~~~~~~g~~~IVVgTrsal~-~p~~~l~liVvDEe 267 (679)
T PRK05580 233 EWRKAKRGEAKVVIGARSALF-LPFKNLGLIIVDEE 267 (679)
T ss_pred HHHHHHcCCCCEEEeccHHhc-ccccCCCEEEEECC
Confidence 999999999999999974432 45567888775553
No 305
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=95.27 E-value=0.12 Score=54.00 Aligned_cols=22 Identities=23% Similarity=0.128 Sum_probs=17.8
Q ss_pred EEEEccCCChHhHHHHHHHHHH
Q 010357 59 VLVNAATGTGKTVAYLAPIINH 80 (512)
Q Consensus 59 ~lv~~pTGsGKT~~~~~~~~~~ 80 (512)
+|++||.|+|||.++...+...
T Consensus 41 yLFtGPpGvGKTTlAriLAKaL 62 (830)
T PRK07003 41 YLFTGTRGVGKTTLSRIFAKAL 62 (830)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5899999999998877665544
No 306
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.27 E-value=0.12 Score=52.64 Aligned_cols=95 Identities=13% Similarity=0.186 Sum_probs=74.0
Q ss_pred CCchHHHHHHHHHhhhccccCceEEEEeecchhhhhHHHhhhhhcCCCCCCChhHHHhhhhccceeeecCCCCHHHHHHH
Q 010357 299 CGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTT 378 (512)
Q Consensus 299 ~~~k~~~l~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~l~g~~~~~~r~~~ 378 (512)
.+.|.......+...+ ..++++++.++++..+..+++.|++.. +..+..+||+++..+|...
T Consensus 7 GsGKT~v~l~~i~~~l--~~g~~vLvlvP~i~L~~Q~~~~l~~~f----------------~~~v~vlhs~~~~~er~~~ 68 (505)
T TIGR00595 7 GSGKTEVYLQAIEKVL--ALGKSVLVLVPEIALTPQMIQRFKYRF----------------GSQVAVLHSGLSDSEKLQA 68 (505)
T ss_pred CCCHHHHHHHHHHHHH--HcCCeEEEEeCcHHHHHHHHHHHHHHh----------------CCcEEEEECCCCHHHHHHH
Confidence 4567776666666554 336789999999999999999987642 4568889999999999999
Q ss_pred HHhhhcCCCcEEEeecccccCCCCCCCcEEEEeC
Q 010357 379 FGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYD 412 (512)
Q Consensus 379 ~~~f~~~~~~vLvaT~~~~~Gldip~~~~VI~~~ 412 (512)
.....+|+.+|+|+|..+-. ..+.++.+||.-.
T Consensus 69 ~~~~~~g~~~IVVGTrsalf-~p~~~l~lIIVDE 101 (505)
T TIGR00595 69 WRKVKNGEILVVIGTRSALF-LPFKNLGLIIVDE 101 (505)
T ss_pred HHHHHcCCCCEEECChHHHc-CcccCCCEEEEEC
Confidence 99999999999999965432 3456778877544
No 307
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.26 E-value=0.28 Score=51.69 Aligned_cols=24 Identities=21% Similarity=0.163 Sum_probs=19.0
Q ss_pred CCEEEEccCCChHhHHHHHHHHHH
Q 010357 57 RHVLVNAATGTGKTVAYLAPIINH 80 (512)
Q Consensus 57 ~~~lv~~pTGsGKT~~~~~~~~~~ 80 (512)
+-+.++||||+|||.+....+...
T Consensus 186 ~Vi~lVGpnGvGKTTTiaKLA~~~ 209 (767)
T PRK14723 186 GVLALVGPTGVGKTTTTAKLAARC 209 (767)
T ss_pred eEEEEECCCCCcHHHHHHHHHhhH
Confidence 346799999999998877766554
No 308
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=95.25 E-value=0.34 Score=51.42 Aligned_cols=20 Identities=30% Similarity=0.469 Sum_probs=16.2
Q ss_pred EEEEccCCChHhHHHHHHHH
Q 010357 59 VLVNAATGTGKTVAYLAPII 78 (512)
Q Consensus 59 ~lv~~pTGsGKT~~~~~~~~ 78 (512)
++|.|+||+|||.+.-..+-
T Consensus 784 LYIyG~PGTGKTATVK~VLr 803 (1164)
T PTZ00112 784 LYISGMPGTGKTATVYSVIQ 803 (1164)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 35999999999998766553
No 309
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=95.23 E-value=0.26 Score=46.10 Aligned_cols=24 Identities=29% Similarity=0.250 Sum_probs=18.6
Q ss_pred CCCEEEEccCCChHhHHHHHHHHH
Q 010357 56 GRHVLVNAATGTGKTVAYLAPIIN 79 (512)
Q Consensus 56 ~~~~lv~~pTGsGKT~~~~~~~~~ 79 (512)
+.++++.||+|+|||.++...+..
T Consensus 58 ~~~vll~G~pGTGKT~lA~~ia~~ 81 (284)
T TIGR02880 58 TLHMSFTGNPGTGKTTVALRMAQI 81 (284)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHH
Confidence 347999999999999887554433
No 310
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.23 E-value=0.37 Score=48.16 Aligned_cols=89 Identities=18% Similarity=0.057 Sum_probs=45.7
Q ss_pred CCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEE-cCc-HHHHHHHHHHHHHHHhhcCCcceEEEeCCCch
Q 010357 57 RHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVL-VPT-RELCLQVYEILHKLLHRFHWIVPGYVMGGENR 134 (512)
Q Consensus 57 ~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil-~Pt-~~L~~q~~~~~~~~~~~~~~~~~~~~~~g~~~ 134 (512)
+-+.+.||||+|||.+....+........ +.++.++ +-+ +.-+ .+.++.+....+... .......+.
T Consensus 257 ~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G-------~~kV~LI~~Dt~RigA---~EQLr~~AeilGVpv-~~~~~~~Dl 325 (484)
T PRK06995 257 GVFALMGPTGVGKTTTTAKLAARCVMRHG-------ASKVALLTTDSYRIGG---HEQLRIYGKILGVPV-HAVKDAADL 325 (484)
T ss_pred cEEEEECCCCccHHHHHHHHHHHHHHhcC-------CCeEEEEeCCccchhH---HHHHHHHHHHhCCCe-eccCCchhH
Confidence 44679999999999998777655433311 1233333 233 2222 344444444444211 112222223
Q ss_pred HHHHHHHcCCCCEEEeCChHHH
Q 010357 135 SKEKARLRKGISILVATPGRLL 156 (512)
Q Consensus 135 ~~~~~~~~~~~~Iiv~Tp~~l~ 156 (512)
......+.....++|-|+++..
T Consensus 326 ~~aL~~L~d~d~VLIDTaGr~~ 347 (484)
T PRK06995 326 RLALSELRNKHIVLIDTIGMSQ 347 (484)
T ss_pred HHHHHhccCCCeEEeCCCCcCh
Confidence 3333444445678899988543
No 311
>PRK14873 primosome assembly protein PriA; Provisional
Probab=95.20 E-value=0.14 Score=53.61 Aligned_cols=123 Identities=14% Similarity=0.072 Sum_probs=89.6
Q ss_pred CCchHHHHHHHHHhhhccccCceEEEEeecchhhhhHHHhhhhhcCCCCCCChhHHHhhhhccceeeecCCCCHHHHHHH
Q 010357 299 CGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTT 378 (512)
Q Consensus 299 ~~~k~~~l~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~l~g~~~~~~r~~~ 378 (512)
.+.|.....+++...+. .++.+||.++....+..+...|+... ++..+..+|++++..+|.+.
T Consensus 170 GSGKTevyl~~i~~~l~--~Gk~vLvLvPEi~lt~q~~~rl~~~f---------------~~~~v~~lhS~l~~~~R~~~ 232 (665)
T PRK14873 170 GEDWARRLAAAAAATLR--AGRGALVVVPDQRDVDRLEAALRALL---------------GAGDVAVLSAGLGPADRYRR 232 (665)
T ss_pred CCcHHHHHHHHHHHHHH--cCCeEEEEecchhhHHHHHHHHHHHc---------------CCCcEEEECCCCCHHHHHHH
Confidence 46788999998888753 46789999999999999999998763 12568899999999999999
Q ss_pred HHhhhcCCCcEEEeecccccCCCCCCCcEEEEeCCCCChhHHHHhhh-----h---cccCCCCccEEEecC
Q 010357 379 FGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRVG-----R---TARLGERGDSLLFLQ 441 (512)
Q Consensus 379 ~~~f~~~~~~vLvaT~~~~~Gldip~~~~VI~~~~p~s~~~~~Q~~G-----R---agR~g~~g~~~~~~~ 441 (512)
..+..+|+.+|+|+|-.+.. .-+++..+||..+-. -.+|.|.-+ | .-|....|..+++-+
T Consensus 233 w~~~~~G~~~IViGtRSAvF-aP~~~LgLIIvdEEh--d~sykq~~~p~yhaRdvA~~Ra~~~~~~lvLgS 300 (665)
T PRK14873 233 WLAVLRGQARVVVGTRSAVF-APVEDLGLVAIWDDG--DDLLAEPRAPYPHAREVALLRAHQHGCALLIGG 300 (665)
T ss_pred HHHHhCCCCcEEEEcceeEE-eccCCCCEEEEEcCC--chhhcCCCCCCccHHHHHHHHHHHcCCcEEEEC
Confidence 99999999999999965432 234467777765542 224444321 1 123334566666654
No 312
>CHL00181 cbbX CbbX; Provisional
Probab=95.20 E-value=0.27 Score=46.00 Aligned_cols=25 Identities=32% Similarity=0.313 Sum_probs=19.8
Q ss_pred CCCEEEEccCCChHhHHHHHHHHHH
Q 010357 56 GRHVLVNAATGTGKTVAYLAPIINH 80 (512)
Q Consensus 56 ~~~~lv~~pTGsGKT~~~~~~~~~~ 80 (512)
+.++++.||+|+|||.++-..+...
T Consensus 59 ~~~ill~G~pGtGKT~lAr~la~~~ 83 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVALKMADIL 83 (287)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHH
Confidence 4468999999999998887665543
No 313
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=95.13 E-value=0.12 Score=43.77 Aligned_cols=26 Identities=31% Similarity=0.312 Sum_probs=19.9
Q ss_pred CEEEEccCCChHhHHHHHHHHHHHhh
Q 010357 58 HVLVNAATGTGKTVAYLAPIINHLQS 83 (512)
Q Consensus 58 ~~lv~~pTGsGKT~~~~~~~~~~~~~ 83 (512)
..|+.||.|+||+..+...+...+-.
T Consensus 21 a~L~~G~~g~gk~~~a~~~a~~ll~~ 46 (162)
T PF13177_consen 21 ALLFHGPSGSGKKTLALAFARALLCS 46 (162)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC-T
T ss_pred eEEEECCCCCCHHHHHHHHHHHHcCC
Confidence 46999999999998877776655443
No 314
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=95.10 E-value=0.57 Score=43.76 Aligned_cols=134 Identities=19% Similarity=0.212 Sum_probs=75.7
Q ss_pred EEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcC--cHHHHHHHHHHHHHHHhhcCCcceEEEeCCCchHH
Q 010357 59 VLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVP--TRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSK 136 (512)
Q Consensus 59 ~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P--t~~L~~q~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 136 (512)
++++|-.|+|||.+..-.+.....+ |.++++.+- -|+-| .+.++.|.+..+...+..-.|++...-
T Consensus 142 il~vGVNG~GKTTTIaKLA~~l~~~---------g~~VllaA~DTFRAaA---iEQL~~w~er~gv~vI~~~~G~DpAaV 209 (340)
T COG0552 142 ILFVGVNGVGKTTTIAKLAKYLKQQ---------GKSVLLAAGDTFRAAA---IEQLEVWGERLGVPVISGKEGADPAAV 209 (340)
T ss_pred EEEEecCCCchHhHHHHHHHHHHHC---------CCeEEEEecchHHHHH---HHHHHHHHHHhCCeEEccCCCCCcHHH
Confidence 5789999999999887777666544 666666653 23333 334445555445333332222222211
Q ss_pred HHHHHcCCCCEEEeCChHHHHHHhhcCCCcCCceeEEEEcchhHHHhc-CchHHHHHHHHHhccCCCCCCCCCCcccccc
Q 010357 137 EKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILEL-GFGKEIEEILDILGSRNIGSIGEGNEVSNVK 215 (512)
Q Consensus 137 ~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lV~DEah~l~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 215 (512)
.++.+..... .++++|++|=|-++-.. +.-..++.|.+-+.+..... +.
T Consensus 210 ------------------afDAi~~Aka---r~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~a---------p~ 259 (340)
T COG0552 210 ------------------AFDAIQAAKA---RGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDA---------PH 259 (340)
T ss_pred ------------------HHHHHHHHHH---cCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCC---------Cc
Confidence 2333333222 26788999988887443 46667777777776532221 13
Q ss_pred eeEEEEEEecchhhHHHHH
Q 010357 216 RQNLLLSATLNEKVNHLAK 234 (512)
Q Consensus 216 ~~~i~~SAT~~~~~~~~~~ 234 (512)
--++.+-||..++.....+
T Consensus 260 e~llvlDAttGqnal~QAk 278 (340)
T COG0552 260 EILLVLDATTGQNALSQAK 278 (340)
T ss_pred eEEEEEEcccChhHHHHHH
Confidence 3455558998765444333
No 315
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.10 E-value=0.21 Score=50.11 Aligned_cols=63 Identities=13% Similarity=0.168 Sum_probs=38.5
Q ss_pred CcccCCCCHHHHHHHHHhcCCC----CCcHHHHHHHHH---------hhcCCCEEEEccCCChHhHHHHHHHHHHH
Q 010357 19 SFSSLGLHSTLCDQLRERLGFE----APTKVQAQAIPV---------ILSGRHVLVNAATGTGKTVAYLAPIINHL 81 (512)
Q Consensus 19 ~~~~~~l~~~~~~~l~~~~~~~----~~~~~Q~~~~~~---------~~~~~~~lv~~pTGsGKT~~~~~~~~~~~ 81 (512)
.+...|+++.+.+.|.+.++-. ..+.+-...+.. +..|+.+.+.||||+|||..+...+....
T Consensus 300 ~L~~~Gvs~~la~~L~~~l~~~~~~~~~~~~l~~~L~~~l~v~~~~~l~~G~vIaLVGPtGvGKTTtaakLAa~la 375 (559)
T PRK12727 300 LMDDYGFDAGLTRDVAMQIPADTELHRGRGLMLGLLSKRLPVAPVDPLERGGVIALVGPTGAGKTTTIAKLAQRFA 375 (559)
T ss_pred HHHHCCCCHHHHHHHHHhhhcccchhhHHHHHHHHHHHhcCcCccccccCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4556688888888887765321 112221222222 12356778999999999988766665543
No 316
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.10 E-value=0.31 Score=47.58 Aligned_cols=23 Identities=26% Similarity=0.270 Sum_probs=19.0
Q ss_pred CEEEEccCCChHhHHHHHHHHHH
Q 010357 58 HVLVNAATGTGKTVAYLAPIINH 80 (512)
Q Consensus 58 ~~lv~~pTGsGKT~~~~~~~~~~ 80 (512)
-+++.||+|+|||.++...+...
T Consensus 225 vi~lvGptGvGKTTtaaKLA~~~ 247 (432)
T PRK12724 225 VVFFVGPTGSGKTTSIAKLAAKY 247 (432)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 36789999999999988777654
No 317
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=95.09 E-value=0.14 Score=48.51 Aligned_cols=57 Identities=30% Similarity=0.348 Sum_probs=37.3
Q ss_pred CcHHHHHHHHHh-hcCCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcHHH
Q 010357 42 PTKVQAQAIPVI-LSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTREL 105 (512)
Q Consensus 42 ~~~~Q~~~~~~~-~~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L 105 (512)
+++.|.+.+..+ ..+++++++|+||||||... ..++..+... ....+++.+-.+.++
T Consensus 133 ~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTll-~aL~~~~~~~------~~~~rivtIEd~~El 190 (319)
T PRK13894 133 MTAAQREAIIAAVRAHRNILVIGGTGSGKTTLV-NAIINEMVIQ------DPTERVFIIEDTGEI 190 (319)
T ss_pred CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHHH-HHHHHhhhhc------CCCceEEEEcCCCcc
Confidence 567788888754 46779999999999999544 3333333211 124457777777665
No 318
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=95.09 E-value=0.1 Score=55.27 Aligned_cols=99 Identities=16% Similarity=0.222 Sum_probs=75.6
Q ss_pred CCchHHHHHHHHHhhhccccCceEEEEeecchhhhhHHHhhhhhcCCCCCCChhHHHhhhhccceeeecCCCCHHHHHHH
Q 010357 299 CGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTT 378 (512)
Q Consensus 299 ~~~k~~~l~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~l~g~~~~~~r~~~ 378 (512)
.+.|..+..-.+.... ..+.++++.+|++.-+...++.++..... .+..+..++|+++..+|..+
T Consensus 292 GSGKT~va~~~il~~~--~~g~q~lilaPT~~LA~Q~~~~l~~l~~~-------------~~i~v~ll~G~~~~~~r~~~ 356 (681)
T PRK10917 292 GSGKTVVAALAALAAI--EAGYQAALMAPTEILAEQHYENLKKLLEP-------------LGIRVALLTGSLKGKERREI 356 (681)
T ss_pred CCcHHHHHHHHHHHHH--HcCCeEEEEeccHHHHHHHHHHHHHHHhh-------------cCcEEEEEcCCCCHHHHHHH
Confidence 3456554443333332 24679999999999999999888775321 15789999999999999999
Q ss_pred HHhhhcCCCcEEEeecc-cccCCCCCCCcEEEEeC
Q 010357 379 FGAFKTEKKALLLSTDV-AARGLDFPKVKCIIQYD 412 (512)
Q Consensus 379 ~~~f~~~~~~vLvaT~~-~~~Gldip~~~~VI~~~ 412 (512)
++.+.+|+.+|+|+|.. +...+.+.++.+||.-.
T Consensus 357 ~~~l~~g~~~IvVgT~~ll~~~v~~~~l~lvVIDE 391 (681)
T PRK10917 357 LEAIASGEADIVIGTHALIQDDVEFHNLGLVIIDE 391 (681)
T ss_pred HHHHhCCCCCEEEchHHHhcccchhcccceEEEec
Confidence 99999999999999975 45567788888888543
No 319
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.07 E-value=0.081 Score=53.67 Aligned_cols=23 Identities=22% Similarity=0.117 Sum_probs=18.3
Q ss_pred CEEEEccCCChHhHHHHHHHHHH
Q 010357 58 HVLVNAATGTGKTVAYLAPIINH 80 (512)
Q Consensus 58 ~~lv~~pTGsGKT~~~~~~~~~~ 80 (512)
-.|+.||.|+|||.++...+...
T Consensus 40 a~Lf~Gp~G~GKTt~A~~lAk~l 62 (509)
T PRK14958 40 AYLFTGTRGVGKTTISRILAKCL 62 (509)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 36899999999998877665544
No 320
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=95.01 E-value=0.74 Score=42.68 Aligned_cols=24 Identities=21% Similarity=0.171 Sum_probs=18.7
Q ss_pred CEEEEccCCChHhHHHHHHHHHHH
Q 010357 58 HVLVNAATGTGKTVAYLAPIINHL 81 (512)
Q Consensus 58 ~~lv~~pTGsGKT~~~~~~~~~~~ 81 (512)
-+++.+|+|+|||.+..-.+....
T Consensus 74 vi~l~G~~G~GKTTt~akLA~~l~ 97 (272)
T TIGR00064 74 VILFVGVNGVGKTTTIAKLANKLK 97 (272)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHH
Confidence 467889999999988777665543
No 321
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.00 E-value=0.11 Score=49.90 Aligned_cols=26 Identities=27% Similarity=0.245 Sum_probs=20.3
Q ss_pred CCCEEEEccCCChHhHHHHHHHHHHH
Q 010357 56 GRHVLVNAATGTGKTVAYLAPIINHL 81 (512)
Q Consensus 56 ~~~~lv~~pTGsGKT~~~~~~~~~~~ 81 (512)
++.+++.||+|+|||......+....
T Consensus 206 ~~ii~lvGptGvGKTTt~akLA~~l~ 231 (407)
T PRK12726 206 HRIISLIGQTGVGKTTTLVKLGWQLL 231 (407)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 45678999999999988777665543
No 322
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=94.96 E-value=0.25 Score=52.62 Aligned_cols=24 Identities=21% Similarity=0.187 Sum_probs=19.1
Q ss_pred CCCEEEEccCCChHhHHHHHHHHH
Q 010357 56 GRHVLVNAATGTGKTVAYLAPIIN 79 (512)
Q Consensus 56 ~~~~lv~~pTGsGKT~~~~~~~~~ 79 (512)
..+.++.||+|+|||..+-..+..
T Consensus 207 ~~n~LLvGppGvGKT~lae~la~~ 230 (758)
T PRK11034 207 KNNPLLVGESGVGKTAIAEGLAWR 230 (758)
T ss_pred CCCeEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999886655443
No 323
>KOG0701 consensus dsRNA-specific nuclease Dicer and related ribonucleases [RNA processing and modification]
Probab=94.93 E-value=0.013 Score=65.44 Aligned_cols=95 Identities=20% Similarity=0.303 Sum_probs=76.5
Q ss_pred ceEEEEeecchhhhhHHHhhhhhcCCCCCCChhHHHhhhhccceeeecCCC-----------CHHHHHHHHHhhhcCCCc
Q 010357 320 QKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNM-----------KQEDRRTTFGAFKTEKKA 388 (512)
Q Consensus 320 ~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~l~g~~-----------~~~~r~~~~~~f~~~~~~ 388 (512)
-..++|++.+..+....+.++....... ..+.|.+ ....+..+++.|.....+
T Consensus 293 l~~i~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~g~~~~~~~k~~~~~~~~~~~~vl~~~~~~~ln 356 (1606)
T KOG0701|consen 293 LSGIIFVDQRYTAYVLLELLREIFSNDP----------------LFVTGASGANLWKSFKNELELRQAEVLRRFHFHELN 356 (1606)
T ss_pred hhheeecccchHHHHHHHHHHHhhccCc----------------ceeeccccCccchhhHHHHHhhhHHHHHHHhhhhhh
Confidence 5778999999998888888876543211 1123322 122367899999999999
Q ss_pred EEEeecccccCCCCCCCcEEEEeCCCCChhHHHHhhhhcccC
Q 010357 389 LLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRVGRTARL 430 (512)
Q Consensus 389 vLvaT~~~~~Gldip~~~~VI~~~~p~s~~~~~Q~~GRagR~ 430 (512)
+|++|.++.+|+|++.++.|+.++.|.....|+|..||+-+.
T Consensus 357 ~L~~~~~~~e~~d~~~~~~~~~~~~~~~~~~~vq~~~r~~~~ 398 (1606)
T KOG0701|consen 357 LLIATSVLEEGVDVPKCNLVVLFDAPTYYRSYVQKKGRARAA 398 (1606)
T ss_pred HHHHHHHHHhhcchhhhhhheeccCcchHHHHHHhhcccccc
Confidence 999999999999999999999999999999999999999664
No 324
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=94.91 E-value=0.26 Score=44.74 Aligned_cols=51 Identities=18% Similarity=0.243 Sum_probs=35.6
Q ss_pred cCCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHH
Q 010357 55 SGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHK 115 (512)
Q Consensus 55 ~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~ 115 (512)
.|.-+++.|++|+|||..+...+...+.+ +.+++|+.--.. ..+..+.+..
T Consensus 24 ~g~~~~i~G~~GsGKt~l~~~~~~~~~~~---------g~~~~y~~~e~~-~~~~~~~~~~ 74 (234)
T PRK06067 24 FPSLILIEGDHGTGKSVLSQQFVYGALKQ---------GKKVYVITTENT-SKSYLKQMES 74 (234)
T ss_pred CCcEEEEECCCCCChHHHHHHHHHHHHhC---------CCEEEEEEcCCC-HHHHHHHHHH
Confidence 45678899999999999988887776644 677888875433 2344444444
No 325
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=94.90 E-value=0.048 Score=47.63 Aligned_cols=24 Identities=29% Similarity=0.480 Sum_probs=19.7
Q ss_pred CEEEEccCCChHhHHHHHHHHHHH
Q 010357 58 HVLVNAATGTGKTVAYLAPIINHL 81 (512)
Q Consensus 58 ~~lv~~pTGsGKT~~~~~~~~~~~ 81 (512)
++++.+|+|+|||.+....+-..+
T Consensus 50 ~liisGpPG~GKTTsi~~LAr~LL 73 (333)
T KOG0991|consen 50 NLIISGPPGTGKTTSILCLARELL 73 (333)
T ss_pred ceEeeCCCCCchhhHHHHHHHHHh
Confidence 789999999999988776665544
No 326
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=94.90 E-value=0.24 Score=48.65 Aligned_cols=23 Identities=35% Similarity=0.345 Sum_probs=18.2
Q ss_pred CCCEEEEccCCChHhHHHHHHHH
Q 010357 56 GRHVLVNAATGTGKTVAYLAPII 78 (512)
Q Consensus 56 ~~~~lv~~pTGsGKT~~~~~~~~ 78 (512)
.+.+++.||+|+|||..+-..+.
T Consensus 165 p~gvLL~GppGtGKT~lAkaia~ 187 (389)
T PRK03992 165 PKGVLLYGPPGTGKTLLAKAVAH 187 (389)
T ss_pred CCceEEECCCCCChHHHHHHHHH
Confidence 35799999999999987655443
No 327
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=94.90 E-value=0.016 Score=59.20 Aligned_cols=55 Identities=18% Similarity=0.274 Sum_probs=45.8
Q ss_pred HHhhhcCCCcEEEeecccccCCCCCCC--------cEEEEeCCCCChhHHHHhhhhcccCCCC
Q 010357 379 FGAFKTEKKALLLSTDVAARGLDFPKV--------KCIIQYDSAGEATEYVHRVGRTARLGER 433 (512)
Q Consensus 379 ~~~f~~~~~~vLvaT~~~~~Gldip~~--------~~VI~~~~p~s~~~~~Q~~GRagR~g~~ 433 (512)
-++|.+|+..|-|-+.+++-||.+..- .+-|....|||...-+|++||+.|..+-
T Consensus 850 KqrFM~GeK~vAIISEAaSSGiSLQsDrRv~NqRRRvHiTLELPWSADrAIQQFGRTHRSNQV 912 (1300)
T KOG1513|consen 850 KQRFMDGEKLVAIISEAASSGISLQSDRRVQNQRRRVHITLELPWSADRAIQQFGRTHRSNQV 912 (1300)
T ss_pred HhhhccccceeeeeehhhccCceeecchhhhhhhheEEEEEECCcchhHHHHHhccccccccc
Confidence 356888988888889999999988642 3456788999999999999999998764
No 328
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=94.79 E-value=0.17 Score=49.70 Aligned_cols=36 Identities=14% Similarity=0.260 Sum_probs=28.4
Q ss_pred CcHHHHHHHHHhhcCCCEEEEccCCChHhHHHHHHH
Q 010357 42 PTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPI 77 (512)
Q Consensus 42 ~~~~Q~~~~~~~~~~~~~lv~~pTGsGKT~~~~~~~ 77 (512)
+.......+..+..++++++.||+|+|||..+-..+
T Consensus 180 ~e~~le~l~~~L~~~~~iil~GppGtGKT~lA~~la 215 (459)
T PRK11331 180 PETTIETILKRLTIKKNIILQGPPGVGKTFVARRLA 215 (459)
T ss_pred CHHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHH
Confidence 455566677777789999999999999998875443
No 329
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=94.78 E-value=0.15 Score=47.10 Aligned_cols=131 Identities=18% Similarity=0.127 Sum_probs=67.7
Q ss_pred cCCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHHhhcCCcceEEEeCCCch
Q 010357 55 SGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENR 134 (512)
Q Consensus 55 ~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~g~~~ 134 (512)
.|.=+++.|+||.|||..++-.+.+.... .+..++|++.=- -..++...+-....... ...+..|...
T Consensus 18 ~g~L~vi~a~pg~GKT~~~l~ia~~~a~~--------~~~~vly~SlEm-~~~~l~~R~la~~s~v~---~~~i~~g~l~ 85 (259)
T PF03796_consen 18 PGELTVIAARPGVGKTAFALQIALNAALN--------GGYPVLYFSLEM-SEEELAARLLARLSGVP---YNKIRSGDLS 85 (259)
T ss_dssp TT-EEEEEESTTSSHHHHHHHHHHHHHHT--------TSSEEEEEESSS--HHHHHHHHHHHHHTST---HHHHHCCGCH
T ss_pred cCcEEEEEecccCCchHHHHHHHHHHHHh--------cCCeEEEEcCCC-CHHHHHHHHHHHhhcch---hhhhhccccC
Confidence 45567899999999999988888887765 236688886531 12233333222221111 1111122222
Q ss_pred HHHHHH-------HcCCCCEEEeCC----hHHHHHHhhcCCCcCCceeEEEEcchhHHHhc----CchHHHHHHHHHhc
Q 010357 135 SKEKAR-------LRKGISILVATP----GRLLDHLKHTSSFLHTNLRWIIFDEADRILEL----GFGKEIEEILDILG 198 (512)
Q Consensus 135 ~~~~~~-------~~~~~~Iiv~Tp----~~l~~~l~~~~~~~~~~~~~lV~DEah~l~~~----~~~~~~~~i~~~~~ 198 (512)
...+.. +....-.+..+| +.+...+....... ..+++||+|=.|.+... +....+..+...++
T Consensus 86 ~~e~~~~~~~~~~l~~~~l~i~~~~~~~~~~i~~~i~~~~~~~-~~~~~v~IDyl~ll~~~~~~~~~~~~~~~i~~~Lk 163 (259)
T PF03796_consen 86 DEEFERLQAAAEKLSDLPLYIEDTPSLTIDDIESKIRRLKREG-KKVDVVFIDYLQLLKSEDSSDNRRQEIGEISRELK 163 (259)
T ss_dssp HHHHHHHHHHHHHHHTSEEEEEESSS-BHHHHHHHHHHHHHHS-TTEEEEEEEEGGGSBTSCSSSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCcEEEECCCCCCHHHHHHHHHHHHhhc-cCCCEEEechHHHhcCCCCCCCHHHHHHHHHHHHH
Confidence 222222 222222333444 34444443322221 47899999999987663 34455555554444
No 330
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=94.78 E-value=0.073 Score=50.15 Aligned_cols=44 Identities=23% Similarity=0.259 Sum_probs=32.7
Q ss_pred cCCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcHHHHH
Q 010357 55 SGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCL 107 (512)
Q Consensus 55 ~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~ 107 (512)
.|+-+.+.+|+|+|||..++..+.+.... +..++|+..-..+..
T Consensus 54 ~G~iteI~G~~GsGKTtLaL~~~~~~~~~---------g~~v~yId~E~~~~~ 97 (321)
T TIGR02012 54 RGRIIEIYGPESSGKTTLALHAIAEAQKA---------GGTAAFIDAEHALDP 97 (321)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc---------CCcEEEEcccchhHH
Confidence 34567899999999999888777776544 677888866554443
No 331
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.74 E-value=0.16 Score=50.95 Aligned_cols=23 Identities=26% Similarity=0.338 Sum_probs=18.5
Q ss_pred CCEEEEccCCChHhHHHHHHHHH
Q 010357 57 RHVLVNAATGTGKTVAYLAPIIN 79 (512)
Q Consensus 57 ~~~lv~~pTGsGKT~~~~~~~~~ 79 (512)
+..+++||.|+|||.++.+.+..
T Consensus 36 ha~Lf~Gp~G~GKTT~ArilAk~ 58 (491)
T PRK14964 36 QSILLVGASGVGKTTCARIISLC 58 (491)
T ss_pred ceEEEECCCCccHHHHHHHHHHH
Confidence 35899999999999887766544
No 332
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=94.69 E-value=0.024 Score=51.85 Aligned_cols=61 Identities=18% Similarity=0.121 Sum_probs=36.4
Q ss_pred ccCCcccCCCCHHHHHHHHHhcCCCC----------CcHHHHHHHHH------hhcCCCEEEEccCCChHhHHHHHHH
Q 010357 16 ASCSFSSLGLHSTLCDQLRERLGFEA----------PTKVQAQAIPV------ILSGRHVLVNAATGTGKTVAYLAPI 77 (512)
Q Consensus 16 ~~~~~~~~~l~~~~~~~l~~~~~~~~----------~~~~Q~~~~~~------~~~~~~~lv~~pTGsGKT~~~~~~~ 77 (512)
+..+.++++-+.++...| +.|=+.. -+.|=++.-.. =++..|+++.+|||||||+.+...+
T Consensus 42 ~~~~~~~lPtP~eik~~L-d~YVIGQe~AKKvLsVAVYNHYKRl~~~~~~~dvEL~KSNILLiGPTGsGKTlLAqTLA 118 (408)
T COG1219 42 DEKELSELPTPKEIKAHL-DEYVIGQEQAKKVLSVAVYNHYKRLNNKEDNDDVELSKSNILLIGPTGSGKTLLAQTLA 118 (408)
T ss_pred cchhhccCCChHHHHHHh-hhheecchhhhceeeeeehhHHHHHhccCCCCceeeeeccEEEECCCCCcHHHHHHHHH
Confidence 345667788888888888 5443321 11111111110 0233689999999999998875544
No 333
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=94.68 E-value=0.27 Score=44.90 Aligned_cols=40 Identities=23% Similarity=0.228 Sum_probs=30.3
Q ss_pred hcCCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcC
Q 010357 54 LSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVP 101 (512)
Q Consensus 54 ~~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P 101 (512)
..|+-+++.|++|+|||...+..+.+...+ .+..++|++.
T Consensus 11 ~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~--------~g~~vly~s~ 50 (242)
T cd00984 11 QPGDLIIIAARPSMGKTAFALNIAENIAKK--------QGKPVLFFSL 50 (242)
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHHHHh--------CCCceEEEeC
Confidence 456678999999999998887777776654 1556888873
No 334
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=94.68 E-value=0.29 Score=48.08 Aligned_cols=22 Identities=18% Similarity=0.221 Sum_probs=17.5
Q ss_pred EEEEccCCChHhHHHHHHHHHH
Q 010357 59 VLVNAATGTGKTVAYLAPIINH 80 (512)
Q Consensus 59 ~lv~~pTGsGKT~~~~~~~~~~ 80 (512)
+.++|++|+|||.++.-.+...
T Consensus 103 i~lvG~~GvGKTTtaaKLA~~l 124 (429)
T TIGR01425 103 IMFVGLQGSGKTTTCTKLAYYY 124 (429)
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 5789999999998877666543
No 335
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.67 E-value=0.12 Score=53.17 Aligned_cols=23 Identities=22% Similarity=0.112 Sum_probs=18.4
Q ss_pred CEEEEccCCChHhHHHHHHHHHH
Q 010357 58 HVLVNAATGTGKTVAYLAPIINH 80 (512)
Q Consensus 58 ~~lv~~pTGsGKT~~~~~~~~~~ 80 (512)
-+|+.||.|+|||.++...+...
T Consensus 39 AyLF~GPpGvGKTTlAriLAK~L 61 (702)
T PRK14960 39 AYLFTGTRGVGKTTIARILAKCL 61 (702)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 45999999999998877666554
No 336
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=94.63 E-value=0.16 Score=49.25 Aligned_cols=29 Identities=21% Similarity=0.293 Sum_probs=22.5
Q ss_pred HHhhcCCCEEEEccCCChHhHHHHHHHHH
Q 010357 51 PVILSGRHVLVNAATGTGKTVAYLAPIIN 79 (512)
Q Consensus 51 ~~~~~~~~~lv~~pTGsGKT~~~~~~~~~ 79 (512)
+.+-++.|++..||+|+|||..|.....+
T Consensus 204 ~fve~~~Nli~lGp~GTGKThla~~l~~~ 232 (449)
T TIGR02688 204 PLVEPNYNLIELGPKGTGKSYIYNNLSPY 232 (449)
T ss_pred HHHhcCCcEEEECCCCCCHHHHHHHHhHH
Confidence 45557889999999999999776654434
No 337
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=94.62 E-value=0.39 Score=43.38 Aligned_cols=38 Identities=29% Similarity=0.364 Sum_probs=28.4
Q ss_pred cCCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcC
Q 010357 55 SGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVP 101 (512)
Q Consensus 55 ~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P 101 (512)
.|..+++.+++|+|||..+...+.+.+.. +..++++.-
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~~~~~---------g~~~~~is~ 56 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYKGLRD---------GDPVIYVTT 56 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHHHhc---------CCeEEEEEc
Confidence 56788999999999998877666655543 456777764
No 338
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=94.58 E-value=0.085 Score=49.29 Aligned_cols=62 Identities=26% Similarity=0.334 Sum_probs=43.9
Q ss_pred hcCCCCCcHHHHHHHHHhhcCC-CEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcHHHHH
Q 010357 36 RLGFEAPTKVQAQAIPVILSGR-HVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCL 107 (512)
Q Consensus 36 ~~~~~~~~~~Q~~~~~~~~~~~-~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~ 107 (512)
...|..+++-|...+..+...+ |++++|.||||||... +.+...-+ ...+++.+=-|-+|..
T Consensus 152 li~~gt~~~~~a~~L~~av~~r~NILisGGTGSGKTTlL-----Nal~~~i~-----~~eRvItiEDtaELql 214 (355)
T COG4962 152 LIIFGTMIRRAAKFLRRAVGIRCNILISGGTGSGKTTLL-----NALSGFID-----SDERVITIEDTAELQL 214 (355)
T ss_pred HHHcCCcCHHHHHHHHHHHhhceeEEEeCCCCCCHHHHH-----HHHHhcCC-----CcccEEEEeehhhhcc
Confidence 3356789999999998877665 9999999999999653 22222222 2346888888877643
No 339
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=94.58 E-value=0.46 Score=49.39 Aligned_cols=23 Identities=22% Similarity=0.112 Sum_probs=18.5
Q ss_pred EEEEccCCChHhHHHHHHHHHHH
Q 010357 59 VLVNAATGTGKTVAYLAPIINHL 81 (512)
Q Consensus 59 ~lv~~pTGsGKT~~~~~~~~~~~ 81 (512)
.|+.||.|+|||.++...+....
T Consensus 41 yLf~Gp~GvGKTTlAr~lAk~L~ 63 (647)
T PRK07994 41 YLFSGTRGVGKTTIARLLAKGLN 63 (647)
T ss_pred EEEECCCCCCHHHHHHHHHHhhh
Confidence 58999999999988877665443
No 340
>PF00265 TK: Thymidine kinase; InterPro: IPR001267 Thymidine kinase (TK) (2.7.1.21 from EC) is an ubiquitous enzyme that catalyzes the ATP-dependent phosphorylation of thymidine. Two different families of Thymidine kinase have been identified [, ] and are represented in this entry; one groups together Thymidine kinase from herpesviruses, as well as cytosolic thymidylate kinases and the second family groups Thymidine kinase from various sources that include, vertebrates, bacteria, the Bacteriophage T4, poxviruses, African swine fever virus (ASFV) and Fish lymphocystis disease virus (FLDV). The major capsid protein of insect iridescent viruses also belongs to this family.; GO: 0004797 thymidine kinase activity, 0005524 ATP binding; PDB: 1XX6_B 2J9R_A 2J87_B 3E2I_A 2JA1_A 2UZ3_B 2B8T_B 2WVJ_A 1W4R_F 1XBT_F ....
Probab=94.57 E-value=0.087 Score=45.11 Aligned_cols=37 Identities=19% Similarity=0.261 Sum_probs=26.9
Q ss_pred EEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcHH
Q 010357 59 VLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRE 104 (512)
Q Consensus 59 ~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~ 104 (512)
.++.||++||||.-.+..+...-.. +.+++++-|...
T Consensus 4 ~~i~GpM~sGKS~eLi~~~~~~~~~---------~~~v~~~kp~~D 40 (176)
T PF00265_consen 4 EFITGPMFSGKSTELIRRIHRYEIA---------GKKVLVFKPAID 40 (176)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHT---------T-EEEEEEESTS
T ss_pred EEEECCcCChhHHHHHHHHHHHHhC---------CCeEEEEEeccc
Confidence 4789999999998776666544333 777999988743
No 341
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=94.57 E-value=0.36 Score=47.40 Aligned_cols=59 Identities=25% Similarity=0.323 Sum_probs=34.5
Q ss_pred ccCCcccCCCCHHHHHHHHHhc--CCCCCcHHHHHHHHHhhcCCCEEEEccCCChHhHHHHHHH
Q 010357 16 ASCSFSSLGLHSTLCDQLRERL--GFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPI 77 (512)
Q Consensus 16 ~~~~~~~~~l~~~~~~~l~~~~--~~~~~~~~Q~~~~~~~~~~~~~lv~~pTGsGKT~~~~~~~ 77 (512)
+..+|++.+--+...+.+.+.. ++.+|.-++.-. +...+.+++.||+|+|||..+-..+
T Consensus 140 p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~G---l~~pkgvLL~GppGTGKT~LAkalA 200 (398)
T PTZ00454 140 PDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIG---IDPPRGVLLYGPPGTGKTMLAKAVA 200 (398)
T ss_pred CCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcC---CCCCceEEEECCCCCCHHHHHHHHH
Confidence 4456777666556665554432 222222222211 2245689999999999998765544
No 342
>COG3972 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=94.54 E-value=0.22 Score=48.55 Aligned_cols=80 Identities=14% Similarity=0.104 Sum_probs=60.2
Q ss_pred HHHHHHHHhcCCCCCcHHHHHHHHHhhcCCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcHHHHH
Q 010357 28 TLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCL 107 (512)
Q Consensus 28 ~~~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~ 107 (512)
-+++.+.. .+.++-..|.++.-..-.|.. .+.|=.|||||...++-+.+.... .+..++++-+-|+.|+.
T Consensus 151 a~l~~ies--kIanfD~~Q~kaa~~~~~G~q-rIrGLAGSGKT~~La~Kaa~lh~k-------nPd~~I~~Tfftk~L~s 220 (660)
T COG3972 151 ALLDTIES--KIANFDTDQTKAAFQSGFGKQ-RIRGLAGSGKTELLAHKAAELHSK-------NPDSRIAFTFFTKILAS 220 (660)
T ss_pred HHHHHHHH--HHhcccchhheeeeecCCchh-hhhcccCCCchhHHHHHHHHHhcC-------CCCceEEEEeehHHHHH
Confidence 45666643 566788889887755445544 678889999999887777665544 34677999999999999
Q ss_pred HHHHHHHHHH
Q 010357 108 QVYEILHKLL 117 (512)
Q Consensus 108 q~~~~~~~~~ 117 (512)
++.....+++
T Consensus 221 ~~r~lv~~F~ 230 (660)
T COG3972 221 TMRTLVPEFF 230 (660)
T ss_pred HHHHHHHHHH
Confidence 9988887776
No 343
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=94.54 E-value=0.07 Score=50.34 Aligned_cols=43 Identities=21% Similarity=0.224 Sum_probs=33.2
Q ss_pred CCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcHHHHH
Q 010357 56 GRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCL 107 (512)
Q Consensus 56 ~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~ 107 (512)
|+-+.+.+|+|+|||..++..+.+.... +..++|+.+-..+-.
T Consensus 55 G~iteI~Gp~GsGKTtLal~~~~~~~~~---------g~~~vyId~E~~~~~ 97 (325)
T cd00983 55 GRIIEIYGPESSGKTTLALHAIAEAQKL---------GGTVAFIDAEHALDP 97 (325)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc---------CCCEEEECccccHHH
Confidence 4567899999999998888777776544 677899887665544
No 344
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.51 E-value=0.66 Score=45.92 Aligned_cols=70 Identities=16% Similarity=0.223 Sum_probs=41.4
Q ss_pred cCCCCHHHHHHHHHhcCCCCCcHHHHHHHHH----hhc---C-----CCEEEEccCCChHhHHHHHHHHHHHhhcCCCCC
Q 010357 22 SLGLHSTLCDQLRERLGFEAPTKVQAQAIPV----ILS---G-----RHVLVNAATGTGKTVAYLAPIINHLQSYSPRID 89 (512)
Q Consensus 22 ~~~l~~~~~~~l~~~~~~~~~~~~Q~~~~~~----~~~---~-----~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~ 89 (512)
.+|.+++.+...... |+....+.-.+.+.. +.+ . ..+++.+|.|||||..++..+..
T Consensus 493 AFG~see~l~~~~~~-Gmi~~g~~v~~il~~G~llv~qvk~s~~s~lvSvLl~Gp~~sGKTaLAA~iA~~---------- 561 (744)
T KOG0741|consen 493 AFGISEEDLERFVMN-GMINWGPPVTRILDDGKLLVQQVKNSERSPLVSVLLEGPPGSGKTALAAKIALS---------- 561 (744)
T ss_pred ccCCCHHHHHHHHhC-CceeecccHHHHHhhHHHHHHHhhccccCcceEEEEecCCCCChHHHHHHHHhh----------
Confidence 467787777777554 555444433333321 111 1 35799999999999766554433
Q ss_pred CCCCceEEEEcCcH
Q 010357 90 RSSGTFALVLVPTR 103 (512)
Q Consensus 90 ~~~~~~~lil~Pt~ 103 (512)
+.-+.+=++.|-.
T Consensus 562 -S~FPFvKiiSpe~ 574 (744)
T KOG0741|consen 562 -SDFPFVKIISPED 574 (744)
T ss_pred -cCCCeEEEeChHH
Confidence 2355566777753
No 345
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=94.43 E-value=0.12 Score=54.16 Aligned_cols=96 Identities=15% Similarity=0.194 Sum_probs=79.8
Q ss_pred EecCCchHHHHHHHHHhhhccccCceEEEEeecchhhhhHHHhhhhhcCCCCCCChhHHHhhhhccceeeecCCCCHHHH
Q 010357 296 KVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDR 375 (512)
Q Consensus 296 ~~~~~~k~~~l~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~l~g~~~~~~r 375 (512)
.+..+.|.+..++++.+.+ ..++.+||.++-+.....+...++... +.++..+|+++++.+|
T Consensus 224 GvTGSGKTEvYl~~i~~~L--~~GkqvLvLVPEI~Ltpq~~~rf~~rF----------------g~~v~vlHS~Ls~~er 285 (730)
T COG1198 224 GVTGSGKTEVYLEAIAKVL--AQGKQVLVLVPEIALTPQLLARFKARF----------------GAKVAVLHSGLSPGER 285 (730)
T ss_pred CCCCCcHHHHHHHHHHHHH--HcCCEEEEEeccccchHHHHHHHHHHh----------------CCChhhhcccCChHHH
Confidence 4567899999999999886 456899999999999999999998763 6789999999999999
Q ss_pred HHHHHhhhcCCCcEEEeecccccCCCCCCCcEEEE
Q 010357 376 RTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQ 410 (512)
Q Consensus 376 ~~~~~~f~~~~~~vLvaT~~~~~Gldip~~~~VI~ 410 (512)
.....+.++|+.+|+|.|-.+-- .=+++..+||.
T Consensus 286 ~~~W~~~~~G~~~vVIGtRSAlF-~Pf~~LGLIIv 319 (730)
T COG1198 286 YRVWRRARRGEARVVIGTRSALF-LPFKNLGLIIV 319 (730)
T ss_pred HHHHHHHhcCCceEEEEechhhc-CchhhccEEEE
Confidence 99999999999999999965421 23346676664
No 346
>PRK09354 recA recombinase A; Provisional
Probab=94.38 E-value=0.097 Score=49.83 Aligned_cols=43 Identities=26% Similarity=0.269 Sum_probs=33.8
Q ss_pred CCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcHHHHH
Q 010357 56 GRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCL 107 (512)
Q Consensus 56 ~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~ 107 (512)
|+-+.+.+|+|||||..++..+.+.... +..++|+..-..+-.
T Consensus 60 G~IteI~G~~GsGKTtLal~~~~~~~~~---------G~~~~yId~E~s~~~ 102 (349)
T PRK09354 60 GRIVEIYGPESSGKTTLALHAIAEAQKA---------GGTAAFIDAEHALDP 102 (349)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc---------CCcEEEECCccchHH
Confidence 4567899999999999988888777644 777899887666554
No 347
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=94.37 E-value=0.078 Score=48.19 Aligned_cols=52 Identities=25% Similarity=0.279 Sum_probs=38.2
Q ss_pred cCCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHH
Q 010357 55 SGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKL 116 (512)
Q Consensus 55 ~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 116 (512)
.|..+++.||+|+|||..++..+.+.+.+ +.+++|++-- +-..+..+.+..+
T Consensus 20 ~gs~~lI~G~pGsGKT~la~~~l~~~~~~---------ge~~lyvs~e-e~~~~i~~~~~~~ 71 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIFSQQFLWNGLQM---------GEPGIYVALE-EHPVQVRRNMAQF 71 (237)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHc---------CCcEEEEEee-CCHHHHHHHHHHh
Confidence 45778999999999999988888777654 6778888743 4455555555543
No 348
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=94.35 E-value=0.51 Score=47.79 Aligned_cols=23 Identities=22% Similarity=0.151 Sum_probs=19.1
Q ss_pred CEEEEccCCChHhHHHHHHHHHH
Q 010357 58 HVLVNAATGTGKTVAYLAPIINH 80 (512)
Q Consensus 58 ~~lv~~pTGsGKT~~~~~~~~~~ 80 (512)
..+++||.|+|||.++...+...
T Consensus 45 a~Lf~Gp~G~GKTT~ArilAk~L 67 (507)
T PRK06645 45 GYLLTGIRGVGKTTSARIIAKAV 67 (507)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999998887766554
No 349
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.35 E-value=0.2 Score=49.35 Aligned_cols=59 Identities=24% Similarity=0.344 Sum_probs=35.0
Q ss_pred cCccCCcccC---CCCHHHHHHHHHhcCCCCCcHHHHHHHHHh--hcCCCEEEEccCCChHhHHHHH
Q 010357 14 IFASCSFSSL---GLHSTLCDQLRERLGFEAPTKVQAQAIPVI--LSGRHVLVNAATGTGKTVAYLA 75 (512)
Q Consensus 14 ~~~~~~~~~~---~l~~~~~~~l~~~~~~~~~~~~Q~~~~~~~--~~~~~~lv~~pTGsGKT~~~~~ 75 (512)
+-+.-+|+++ ||+.+..+-++.+|-.. .+| -+.++.+ ..=+.+++-+|+|+|||+++-.
T Consensus 212 i~Pdf~Fe~mGIGGLd~EFs~IFRRAFAsR-vFp--p~vie~lGi~HVKGiLLyGPPGTGKTLiARq 275 (744)
T KOG0741|consen 212 INPDFNFESMGIGGLDKEFSDIFRRAFASR-VFP--PEVIEQLGIKHVKGILLYGPPGTGKTLIARQ 275 (744)
T ss_pred cCCCCChhhcccccchHHHHHHHHHHHHhh-cCC--HHHHHHcCccceeeEEEECCCCCChhHHHHH
Confidence 3455578888 56777777776544222 111 1222221 1114689999999999988643
No 350
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=94.34 E-value=0.3 Score=46.76 Aligned_cols=28 Identities=36% Similarity=0.325 Sum_probs=21.8
Q ss_pred CCC-EEEEccCCChHhHHHHHHHHHHHhh
Q 010357 56 GRH-VLVNAATGTGKTVAYLAPIINHLQS 83 (512)
Q Consensus 56 ~~~-~lv~~pTGsGKT~~~~~~~~~~~~~ 83 (512)
..+ .++.||.|+|||.++...+-..+-.
T Consensus 23 ~~halL~~Gp~G~Gktt~a~~lA~~l~~~ 51 (325)
T COG0470 23 LPHALLFYGPPGVGKTTAALALAKELLCE 51 (325)
T ss_pred CCceeeeeCCCCCCHHHHHHHHHHHHhCC
Confidence 345 8999999999998887776665533
No 351
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=94.32 E-value=0.35 Score=51.97 Aligned_cols=60 Identities=27% Similarity=0.335 Sum_probs=34.2
Q ss_pred cCCcccCCCCHHHHHHHHHhcCCCCCcHHHHHHHHH--hhcCCCEEEEccCCChHhHHHHHHHHH
Q 010357 17 SCSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPV--ILSGRHVLVNAATGTGKTVAYLAPIIN 79 (512)
Q Consensus 17 ~~~~~~~~l~~~~~~~l~~~~~~~~~~~~Q~~~~~~--~~~~~~~lv~~pTGsGKT~~~~~~~~~ 79 (512)
..+|++.+..+.+.+.+.+.... |..++. .+.. +...+.+++.||+|+|||..+-..+.+
T Consensus 449 ~~~~~di~g~~~~k~~l~~~v~~--~~~~~~-~~~~~g~~~~~giLL~GppGtGKT~lakalA~e 510 (733)
T TIGR01243 449 NVRWSDIGGLEEVKQELREAVEW--PLKHPE-IFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATE 510 (733)
T ss_pred ccchhhcccHHHHHHHHHHHHHh--hhhCHH-HHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh
Confidence 34666666666666666543211 111211 1111 123356899999999999887655443
No 352
>CHL00176 ftsH cell division protein; Validated
Probab=94.29 E-value=0.36 Score=50.36 Aligned_cols=23 Identities=35% Similarity=0.289 Sum_probs=18.4
Q ss_pred CCCEEEEccCCChHhHHHHHHHH
Q 010357 56 GRHVLVNAATGTGKTVAYLAPII 78 (512)
Q Consensus 56 ~~~~lv~~pTGsGKT~~~~~~~~ 78 (512)
.+.+++.||+|+|||..+-..+-
T Consensus 216 p~gVLL~GPpGTGKT~LAralA~ 238 (638)
T CHL00176 216 PKGVLLVGPPGTGKTLLAKAIAG 238 (638)
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999988765543
No 353
>PRK06904 replicative DNA helicase; Validated
Probab=94.28 E-value=0.42 Score=48.13 Aligned_cols=136 Identities=19% Similarity=0.157 Sum_probs=66.9
Q ss_pred HHhhcCCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHHhhcCCcceEEEeC
Q 010357 51 PVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMG 130 (512)
Q Consensus 51 ~~~~~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~ 130 (512)
..+..|.=+++.|.||.|||..++-.+.+.... .+..++|++.= .-..|+...+-..... .....+..
T Consensus 216 ~Gl~~G~LiiIaarPg~GKTafalnia~~~a~~--------~g~~Vl~fSlE-Ms~~ql~~Rlla~~s~---v~~~~i~~ 283 (472)
T PRK06904 216 AGLQPSDLIIVAARPSMGKTTFAMNLCENAAMA--------SEKPVLVFSLE-MPAEQIMMRMLASLSR---VDQTKIRT 283 (472)
T ss_pred hccCCCcEEEEEeCCCCChHHHHHHHHHHHHHh--------cCCeEEEEecc-CCHHHHHHHHHHhhCC---CCHHHhcc
Confidence 334455567889999999998776555554432 24457666433 3344555443333211 11111112
Q ss_pred C-CchHHHHH-------HHcCCCCEEEe-----CChHHHHHHhhcCCCcCCceeEEEEcchhHHHhcC----chHHHHHH
Q 010357 131 G-ENRSKEKA-------RLRKGISILVA-----TPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELG----FGKEIEEI 193 (512)
Q Consensus 131 g-~~~~~~~~-------~~~~~~~Iiv~-----Tp~~l~~~l~~~~~~~~~~~~~lV~DEah~l~~~~----~~~~~~~i 193 (512)
| .-....+. .+....++.|- |+..+......... ....+++||||=.+.+...+ +...+..+
T Consensus 284 g~~l~~~e~~~~~~a~~~l~~~~~l~I~d~~~~t~~~i~~~~r~~~~-~~~~~~lvvIDYLqli~~~~~~~~r~~ei~~i 362 (472)
T PRK06904 284 GQNLDQQDWAKISSTVGMFKQKPNLYIDDSSGLTPTELRSRARRVYR-ENGGLSLIMVDYLQLMRAPGFEDNRTLEIAEI 362 (472)
T ss_pred CCCCCHHHHHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHHH-hCCCCCEEEEecHHhcCCCCCCCcHHHHHHHH
Confidence 2 22222222 22233446653 34444332322111 11257899999999775332 33445555
Q ss_pred HHHhcc
Q 010357 194 LDILGS 199 (512)
Q Consensus 194 ~~~~~~ 199 (512)
.+.++.
T Consensus 363 sr~LK~ 368 (472)
T PRK06904 363 SRSLKA 368 (472)
T ss_pred HHHHHH
Confidence 555543
No 354
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=94.25 E-value=0.39 Score=45.90 Aligned_cols=40 Identities=15% Similarity=0.055 Sum_probs=29.4
Q ss_pred CcHHHHHHHHHhhc--C---CCEEEEccCCChHhHHHHHHHHHHH
Q 010357 42 PTKVQAQAIPVILS--G---RHVLVNAATGTGKTVAYLAPIINHL 81 (512)
Q Consensus 42 ~~~~Q~~~~~~~~~--~---~~~lv~~pTGsGKT~~~~~~~~~~~ 81 (512)
++|||...+..+.+ + +-.++.||.|.||+..+...+...+
T Consensus 2 ~yPW~~~~~~~l~~~~~rl~ha~Lf~Gp~G~GK~~lA~~~A~~Ll 46 (342)
T PRK06964 2 LYPWQTDDWNRLQALRARLPHALLLHGQAGIGKLDFAQHLAQGLL 46 (342)
T ss_pred CCcccHHHHHHHHHhcCCcceEEEEECCCCCCHHHHHHHHHHHHc
Confidence 46888888877663 2 2468999999999988766654443
No 355
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=94.23 E-value=0.27 Score=51.13 Aligned_cols=23 Identities=22% Similarity=0.176 Sum_probs=18.8
Q ss_pred CEEEEccCCChHhHHHHHHHHHH
Q 010357 58 HVLVNAATGTGKTVAYLAPIINH 80 (512)
Q Consensus 58 ~~lv~~pTGsGKT~~~~~~~~~~ 80 (512)
.+|+.||.|+|||.++...+...
T Consensus 40 a~Lf~GP~GvGKTTlAriLAk~L 62 (709)
T PRK08691 40 AYLLTGTRGVGKTTIARILAKSL 62 (709)
T ss_pred EEEEECCCCCcHHHHHHHHHHHh
Confidence 47999999999998887766554
No 356
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=94.23 E-value=0.32 Score=50.36 Aligned_cols=24 Identities=17% Similarity=0.119 Sum_probs=19.4
Q ss_pred CEEEEccCCChHhHHHHHHHHHHH
Q 010357 58 HVLVNAATGTGKTVAYLAPIINHL 81 (512)
Q Consensus 58 ~~lv~~pTGsGKT~~~~~~~~~~~ 81 (512)
.+|+.||.|+|||.++...+....
T Consensus 48 a~L~~Gp~GvGKTt~Ar~lAk~L~ 71 (598)
T PRK09111 48 AFMLTGVRGVGKTTTARILARALN 71 (598)
T ss_pred eEEEECCCCCCHHHHHHHHHHhhC
Confidence 589999999999988877665543
No 357
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=94.22 E-value=0.36 Score=49.78 Aligned_cols=23 Identities=30% Similarity=0.182 Sum_probs=18.2
Q ss_pred CEEEEccCCChHhHHHHHHHHHH
Q 010357 58 HVLVNAATGTGKTVAYLAPIINH 80 (512)
Q Consensus 58 ~~lv~~pTGsGKT~~~~~~~~~~ 80 (512)
-.|++||.|+|||.++-..+...
T Consensus 40 ayLf~Gp~GtGKTt~Ak~lAkal 62 (559)
T PRK05563 40 AYLFSGPRGTGKTSAAKIFAKAV 62 (559)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 46889999999998877665443
No 358
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=94.22 E-value=0.2 Score=52.77 Aligned_cols=99 Identities=15% Similarity=0.218 Sum_probs=74.7
Q ss_pred CCchHHHHHHHHHhhhccccCceEEEEeecchhhhhHHHhhhhhcCCCCCCChhHHHhhhhccceeeecCCCCHHHHHHH
Q 010357 299 CGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTT 378 (512)
Q Consensus 299 ~~~k~~~l~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~l~g~~~~~~r~~~ 378 (512)
.+.|..+..-.+.... ..+.++++.+|++.-+..+++.+++.... .+.++..++|+++..+|..+
T Consensus 266 GSGKT~va~l~il~~~--~~g~qvlilaPT~~LA~Q~~~~~~~l~~~-------------~gi~v~lltg~~~~~~r~~~ 330 (630)
T TIGR00643 266 GSGKTLVAALAMLAAI--EAGYQVALMAPTEILAEQHYNSLRNLLAP-------------LGIEVALLTGSLKGKRRKEL 330 (630)
T ss_pred CCcHHHHHHHHHHHHH--HcCCcEEEECCHHHHHHHHHHHHHHHhcc-------------cCcEEEEEecCCCHHHHHHH
Confidence 3456554433333332 23679999999999999998888765321 16789999999999999999
Q ss_pred HHhhhcCCCcEEEeeccc-ccCCCCCCCcEEEEeC
Q 010357 379 FGAFKTEKKALLLSTDVA-ARGLDFPKVKCIIQYD 412 (512)
Q Consensus 379 ~~~f~~~~~~vLvaT~~~-~~Gldip~~~~VI~~~ 412 (512)
++...+|+.+|+|+|..+ ...+++.++.+||.-.
T Consensus 331 ~~~i~~g~~~IiVgT~~ll~~~~~~~~l~lvVIDE 365 (630)
T TIGR00643 331 LETIASGQIHLVVGTHALIQEKVEFKRLALVIIDE 365 (630)
T ss_pred HHHHhCCCCCEEEecHHHHhccccccccceEEEec
Confidence 999999999999999764 4567788888887543
No 359
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=94.21 E-value=0.38 Score=41.43 Aligned_cols=40 Identities=18% Similarity=0.239 Sum_probs=32.1
Q ss_pred cCCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcH
Q 010357 55 SGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTR 103 (512)
Q Consensus 55 ~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~ 103 (512)
...++.+..++|.|||-+++-.++..+.. |.+++++-=.+
T Consensus 21 ~~g~v~v~~g~GkGKtt~a~g~a~ra~g~---------G~~V~ivQFlK 60 (191)
T PRK05986 21 EKGLLIVHTGNGKGKSTAAFGMALRAVGH---------GKKVGVVQFIK 60 (191)
T ss_pred cCCeEEEECCCCCChHHHHHHHHHHHHHC---------CCeEEEEEEec
Confidence 45689999999999999998888888765 77787775443
No 360
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=94.20 E-value=1.4 Score=41.82 Aligned_cols=24 Identities=25% Similarity=0.162 Sum_probs=18.3
Q ss_pred CCEEEEccCCChHhHHHHHHHHHH
Q 010357 57 RHVLVNAATGTGKTVAYLAPIINH 80 (512)
Q Consensus 57 ~~~lv~~pTGsGKT~~~~~~~~~~ 80 (512)
+-+.+.||+|+|||.+....+...
T Consensus 115 ~vi~lvGpnGsGKTTt~~kLA~~l 138 (318)
T PRK10416 115 FVILVVGVNGVGKTTTIGKLAHKY 138 (318)
T ss_pred eEEEEECCCCCcHHHHHHHHHHHH
Confidence 346789999999998876665544
No 361
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.20 E-value=0.54 Score=47.26 Aligned_cols=23 Identities=22% Similarity=0.167 Sum_probs=18.2
Q ss_pred CEEEEccCCChHhHHHHHHHHHH
Q 010357 58 HVLVNAATGTGKTVAYLAPIINH 80 (512)
Q Consensus 58 ~~lv~~pTGsGKT~~~~~~~~~~ 80 (512)
.+++.||+|+|||..+...+...
T Consensus 38 ~~Lf~GPpGtGKTTlA~~lA~~l 60 (472)
T PRK14962 38 AYIFAGPRGTGKTTVARILAKSL 60 (472)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 36999999999998877665443
No 362
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=94.20 E-value=0.35 Score=51.99 Aligned_cols=59 Identities=24% Similarity=0.336 Sum_probs=36.0
Q ss_pred CccCCcccCCCCHHHHHHHHHhcCCCCCcHHHHHHHHH--hhcCCCEEEEccCCChHhHHHHHH
Q 010357 15 FASCSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPV--ILSGRHVLVNAATGTGKTVAYLAP 76 (512)
Q Consensus 15 ~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~Q~~~~~~--~~~~~~~lv~~pTGsGKT~~~~~~ 76 (512)
.+..+|++++-.+...+.+.+.+-. |..+ .+.+.. +..++.+++.||+|+|||..+-..
T Consensus 172 ~~~~~~~di~G~~~~~~~l~~~i~~--~~~~-~~~~~~~gi~~~~giLL~GppGtGKT~larai 232 (733)
T TIGR01243 172 VPKVTYEDIGGLKEAKEKIREMVEL--PMKH-PELFEHLGIEPPKGVLLYGPPGTGKTLLAKAV 232 (733)
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHH--HhhC-HHHHHhcCCCCCceEEEECCCCCChHHHHHHH
Confidence 4567888887666777666554321 1111 122221 234578999999999999775443
No 363
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=94.20 E-value=0.16 Score=47.80 Aligned_cols=57 Identities=25% Similarity=0.350 Sum_probs=36.9
Q ss_pred CcHHHHHHHHHhh-cCCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcHHH
Q 010357 42 PTKVQAQAIPVIL-SGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTREL 105 (512)
Q Consensus 42 ~~~~Q~~~~~~~~-~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L 105 (512)
+++-|.+.+..+. .+.+++++||||||||...-. ++..+... ....+++.+=.+.++
T Consensus 117 ~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTll~a-l~~~i~~~------~~~~ri~tiEd~~El 174 (299)
T TIGR02782 117 MTAAQRDVLREAVLARKNILVVGGTGSGKTTLANA-LLAEIAKN------DPTDRVVIIEDTREL 174 (299)
T ss_pred CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHHHHH-HHHHhhcc------CCCceEEEECCchhh
Confidence 5556666665544 567999999999999966533 33333221 124567887777776
No 364
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=94.17 E-value=0.31 Score=49.70 Aligned_cols=59 Identities=22% Similarity=0.259 Sum_probs=34.0
Q ss_pred ccCCcccCCCCHHHHHHHHHhcC-CCCCcHHHHHHHHHhhcCCCEEEEccCCChHhHHHHHHH
Q 010357 16 ASCSFSSLGLHSTLCDQLRERLG-FEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPI 77 (512)
Q Consensus 16 ~~~~~~~~~l~~~~~~~l~~~~~-~~~~~~~Q~~~~~~~~~~~~~lv~~pTGsGKT~~~~~~~ 77 (512)
+..+|+++.-.++....+.+... +..+..++... ....+.+++.||+|+|||..+-..+
T Consensus 50 ~~~~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g---~~~~~giLL~GppGtGKT~la~alA 109 (495)
T TIGR01241 50 PKVTFKDVAGIDEAKEELMEIVDFLKNPSKFTKLG---AKIPKGVLLVGPPGTGKTLLAKAVA 109 (495)
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcC---CCCCCcEEEECCCCCCHHHHHHHHH
Confidence 45678887666666665543221 11222222211 1123579999999999998765544
No 365
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=94.13 E-value=0.79 Score=46.24 Aligned_cols=61 Identities=20% Similarity=0.251 Sum_probs=37.5
Q ss_pred ccCCcccCCCCHHHHHHHHHhc--CCCCCcHHHHHHHHHhhcCCCEEEEccCCChHhHHHHHHHHH
Q 010357 16 ASCSFSSLGLHSTLCDQLRERL--GFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIIN 79 (512)
Q Consensus 16 ~~~~~~~~~l~~~~~~~l~~~~--~~~~~~~~Q~~~~~~~~~~~~~lv~~pTGsGKT~~~~~~~~~ 79 (512)
+..+|.+.|--.++...|.-.. ++.+|-.|+.-.+. .-..+|++||+|+|||+.+-..+-+
T Consensus 506 PdVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~---~PsGvLL~GPPGCGKTLlAKAVANE 568 (802)
T KOG0733|consen 506 PDVTWDDIGALEEVRLELNMAILAPIKRPDLFKALGID---APSGVLLCGPPGCGKTLLAKAVANE 568 (802)
T ss_pred CCCChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCC---CCCceEEeCCCCccHHHHHHHHhhh
Confidence 4557888887777777774321 33333333322221 1235999999999999887655544
No 366
>PF05729 NACHT: NACHT domain
Probab=94.05 E-value=0.46 Score=40.10 Aligned_cols=46 Identities=13% Similarity=0.121 Sum_probs=27.0
Q ss_pred CEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcHHHHH
Q 010357 58 HVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCL 107 (512)
Q Consensus 58 ~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~ 107 (512)
-++|.|+.|+|||......+.......... ....+++..+.+....
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~ 47 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAEEEPPP----SKFPYPFFFSLRDISD 47 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhcCccc----ccceEEEEEeehhhhh
Confidence 468999999999987765555444332111 0123555555555544
No 367
>PRK08840 replicative DNA helicase; Provisional
Probab=93.97 E-value=0.46 Score=47.70 Aligned_cols=139 Identities=17% Similarity=0.131 Sum_probs=66.3
Q ss_pred HHHHHhhcCCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHHhhcCCcceEE
Q 010357 48 QAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGY 127 (512)
Q Consensus 48 ~~~~~~~~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~ 127 (512)
....-+..|.-+++.|.||.|||..++-.+.+.... .+..++|+..= .-..|+...+-..... .....
T Consensus 209 ~~~~G~~~g~LiviaarPg~GKTafalnia~~~a~~--------~~~~v~~fSlE-Ms~~ql~~Rlla~~s~---v~~~~ 276 (464)
T PRK08840 209 KKTAGLQGSDLIIVAARPSMGKTTFAMNLCENAAMD--------QDKPVLIFSLE-MPAEQLMMRMLASLSR---VDQTK 276 (464)
T ss_pred HhhcCCCCCceEEEEeCCCCchHHHHHHHHHHHHHh--------CCCeEEEEecc-CCHHHHHHHHHHhhCC---CCHHH
Confidence 334444456667889999999998876666555432 14456666432 2244444433322111 11111
Q ss_pred EeCCCchHHHHHH-------HcCCCCEEEe-CC----hHHHHHHhhcCCCcCCceeEEEEcchhHHHhcC----chHHHH
Q 010357 128 VMGGENRSKEKAR-------LRKGISILVA-TP----GRLLDHLKHTSSFLHTNLRWIIFDEADRILELG----FGKEIE 191 (512)
Q Consensus 128 ~~~g~~~~~~~~~-------~~~~~~Iiv~-Tp----~~l~~~l~~~~~~~~~~~~~lV~DEah~l~~~~----~~~~~~ 191 (512)
+..|.-....+.. +.....+.|- +| ..+.....+... ....+++||||=.|.+...+ ....+.
T Consensus 277 i~~~~l~~~e~~~~~~a~~~l~~~~~l~I~d~~~~ti~~i~~~~r~~~~-~~~~~~lvvIDYLql~~~~~~~~~r~~ei~ 355 (464)
T PRK08840 277 IRTGQLDDEDWARISSTMGILMEKKNMYIDDSSGLTPTEVRSRARRIAR-EHGGLSMIMVDYLQLMRVPALSDNRTLEIA 355 (464)
T ss_pred HhcCCCCHHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHH-hcCCCCEEEEccHHhcCCCCCCCchHHHHH
Confidence 1222222233322 2123345553 22 333322222111 11247899999999875222 333455
Q ss_pred HHHHHhcc
Q 010357 192 EILDILGS 199 (512)
Q Consensus 192 ~i~~~~~~ 199 (512)
.+.+.++.
T Consensus 356 ~isr~LK~ 363 (464)
T PRK08840 356 EISRSLKA 363 (464)
T ss_pred HHHHHHHH
Confidence 55555443
No 368
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=93.95 E-value=0.5 Score=44.72 Aligned_cols=41 Identities=15% Similarity=0.014 Sum_probs=29.9
Q ss_pred CCcHHHHHHHHHhh----cCC---CEEEEccCCChHhHHHHHHHHHHH
Q 010357 41 APTKVQAQAIPVIL----SGR---HVLVNAATGTGKTVAYLAPIINHL 81 (512)
Q Consensus 41 ~~~~~Q~~~~~~~~----~~~---~~lv~~pTGsGKT~~~~~~~~~~~ 81 (512)
.++|||...+..+. +++ -.++.||.|.||+..+...+...+
T Consensus 3 ~~yPWl~~~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~~a~~ll 50 (319)
T PRK06090 3 NDYPWLVPVWQNWKAGLDAGRIPGALLLQSDEGLGVESLVELFSRALL 50 (319)
T ss_pred cCcccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHc
Confidence 47788888877655 333 478999999999977766655544
No 369
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.92 E-value=0.23 Score=48.33 Aligned_cols=22 Identities=23% Similarity=0.173 Sum_probs=17.6
Q ss_pred EEEEccCCChHhHHHHHHHHHH
Q 010357 59 VLVNAATGTGKTVAYLAPIINH 80 (512)
Q Consensus 59 ~lv~~pTGsGKT~~~~~~~~~~ 80 (512)
.++.||.|+|||..+...+...
T Consensus 41 ~L~~Gp~G~GKTtla~~la~~l 62 (363)
T PRK14961 41 WLLSGTRGVGKTTIARLLAKSL 62 (363)
T ss_pred EEEecCCCCCHHHHHHHHHHHh
Confidence 5899999999998876655443
No 370
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=93.88 E-value=0.51 Score=40.03 Aligned_cols=33 Identities=27% Similarity=0.393 Sum_probs=26.7
Q ss_pred CEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEE
Q 010357 58 HVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVL 99 (512)
Q Consensus 58 ~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil 99 (512)
-+.+..++|.|||.+++-.++..+.. +.+++++
T Consensus 7 li~v~~g~GkGKtt~a~g~a~ra~~~---------g~~v~iv 39 (173)
T TIGR00708 7 IIIVHTGNGKGKTTAAFGMALRALGH---------GKKVGVI 39 (173)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHHC---------CCeEEEE
Confidence 46678889999999998888887755 7778776
No 371
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.87 E-value=0.4 Score=48.61 Aligned_cols=22 Identities=23% Similarity=0.232 Sum_probs=17.6
Q ss_pred EEEEccCCChHhHHHHHHHHHH
Q 010357 59 VLVNAATGTGKTVAYLAPIINH 80 (512)
Q Consensus 59 ~lv~~pTGsGKT~~~~~~~~~~ 80 (512)
.++.||.|+|||.++...+...
T Consensus 39 ~Lf~GppGtGKTTlA~~lA~~l 60 (504)
T PRK14963 39 YLFSGPRGVGKTTTARLIAMAV 60 (504)
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 4999999999998876655443
No 372
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=93.81 E-value=0.58 Score=45.63 Aligned_cols=22 Identities=36% Similarity=0.394 Sum_probs=17.6
Q ss_pred CCCEEEEccCCChHhHHHHHHH
Q 010357 56 GRHVLVNAATGTGKTVAYLAPI 77 (512)
Q Consensus 56 ~~~~lv~~pTGsGKT~~~~~~~ 77 (512)
.+.+++.||+|+|||..+-..+
T Consensus 156 p~gvLL~GppGtGKT~lakaia 177 (364)
T TIGR01242 156 PKGVLLYGPPGTGKTLLAKAVA 177 (364)
T ss_pred CceEEEECCCCCCHHHHHHHHH
Confidence 4569999999999997765544
No 373
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.80 E-value=0.27 Score=50.59 Aligned_cols=24 Identities=21% Similarity=0.102 Sum_probs=19.0
Q ss_pred CEEEEccCCChHhHHHHHHHHHHH
Q 010357 58 HVLVNAATGTGKTVAYLAPIINHL 81 (512)
Q Consensus 58 ~~lv~~pTGsGKT~~~~~~~~~~~ 81 (512)
-.|++||.|+|||.++...+....
T Consensus 40 A~LFtGP~GvGKTTLAriLAkaLn 63 (700)
T PRK12323 40 AYLFTGTRGVGKTTLSRILAKSLN 63 (700)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 358999999999988877665543
No 374
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=93.77 E-value=0.13 Score=55.25 Aligned_cols=22 Identities=23% Similarity=0.173 Sum_probs=18.6
Q ss_pred EEEEccCCChHhHHHHHHHHHH
Q 010357 59 VLVNAATGTGKTVAYLAPIINH 80 (512)
Q Consensus 59 ~lv~~pTGsGKT~~~~~~~~~~ 80 (512)
.|+.+|.|+|||.++...+...
T Consensus 40 ~Lf~Gp~G~GKTt~A~~lAr~L 61 (824)
T PRK07764 40 YLFSGPRGCGKTSSARILARSL 61 (824)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6899999999999887776554
No 375
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=93.70 E-value=0.095 Score=52.16 Aligned_cols=29 Identities=10% Similarity=0.137 Sum_probs=23.4
Q ss_pred ceeEEEEcchhHHHhcCchHHHHHHHHHh
Q 010357 169 NLRWIIFDEADRILELGFGKEIEEILDIL 197 (512)
Q Consensus 169 ~~~~lV~DEah~l~~~~~~~~~~~i~~~~ 197 (512)
+.++.|+|||-...+.+....+...++..
T Consensus 588 kPk~AiLDE~TSAv~~dvE~~~Yr~~r~~ 616 (659)
T KOG0060|consen 588 KPKFAILDECTSAVTEDVEGALYRKCREM 616 (659)
T ss_pred CCceEEeechhhhccHHHHHHHHHHHHHc
Confidence 56789999999988877777777777655
No 376
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.68 E-value=0.33 Score=51.82 Aligned_cols=22 Identities=23% Similarity=0.113 Sum_probs=17.8
Q ss_pred EEEEccCCChHhHHHHHHHHHH
Q 010357 59 VLVNAATGTGKTVAYLAPIINH 80 (512)
Q Consensus 59 ~lv~~pTGsGKT~~~~~~~~~~ 80 (512)
.|++||.|+|||.++...+...
T Consensus 41 yLFtGPpGtGKTTLARiLAk~L 62 (944)
T PRK14949 41 YLFTGTRGVGKTSLARLFAKGL 62 (944)
T ss_pred EEEECCCCCCHHHHHHHHHHhc
Confidence 4899999999998877766543
No 377
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=93.65 E-value=0.11 Score=51.07 Aligned_cols=39 Identities=28% Similarity=0.400 Sum_probs=27.1
Q ss_pred CcHHHHHHHHHhhcCC--CEEEEccCCChHhHHHHHHHHHHH
Q 010357 42 PTKVQAQAIPVILSGR--HVLVNAATGTGKTVAYLAPIINHL 81 (512)
Q Consensus 42 ~~~~Q~~~~~~~~~~~--~~lv~~pTGsGKT~~~~~~~~~~~ 81 (512)
+.+.|.+.+..+++.. -++|.||||||||.+... ++..+
T Consensus 242 ~~~~~~~~~~~~~~~p~GliLvTGPTGSGKTTTLY~-~L~~l 282 (500)
T COG2804 242 MSPFQLARLLRLLNRPQGLILVTGPTGSGKTTTLYA-ALSEL 282 (500)
T ss_pred CCHHHHHHHHHHHhCCCeEEEEeCCCCCCHHHHHHH-HHHHh
Confidence 4577777777776543 367899999999977443 33443
No 378
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=93.65 E-value=0.29 Score=48.83 Aligned_cols=44 Identities=20% Similarity=0.205 Sum_probs=30.0
Q ss_pred HHHHhhcCCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEc
Q 010357 49 AIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLV 100 (512)
Q Consensus 49 ~~~~~~~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~ 100 (512)
.+..+..|.-+++.|+||+|||..++-.+.+.... .+..++|++
T Consensus 187 ~~~G~~~g~liviag~pg~GKT~~al~ia~~~a~~--------~g~~v~~fS 230 (421)
T TIGR03600 187 LTNGLVKGDLIVIGARPSMGKTTLALNIAENVALR--------EGKPVLFFS 230 (421)
T ss_pred HhcCCCCCceEEEEeCCCCCHHHHHHHHHHHHHHh--------CCCcEEEEE
Confidence 33334456667899999999998887776665422 255577775
No 379
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=93.64 E-value=0.9 Score=43.38 Aligned_cols=22 Identities=45% Similarity=0.545 Sum_probs=17.7
Q ss_pred CEEEEccCCChHhHHHHHHHHH
Q 010357 58 HVLVNAATGTGKTVAYLAPIIN 79 (512)
Q Consensus 58 ~~lv~~pTGsGKT~~~~~~~~~ 79 (512)
++++.||+|+|||.++...+.+
T Consensus 40 ~~ll~G~~G~GKt~~~~~l~~~ 61 (319)
T PRK00440 40 HLLFAGPPGTGKTTAALALARE 61 (319)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999877655444
No 380
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=93.56 E-value=0.49 Score=44.91 Aligned_cols=40 Identities=18% Similarity=0.057 Sum_probs=28.8
Q ss_pred CcHHHHHHHHHhh----cCC---CEEEEccCCChHhHHHHHHHHHHH
Q 010357 42 PTKVQAQAIPVIL----SGR---HVLVNAATGTGKTVAYLAPIINHL 81 (512)
Q Consensus 42 ~~~~Q~~~~~~~~----~~~---~~lv~~pTGsGKT~~~~~~~~~~~ 81 (512)
.+|||+..+..+. +|+ -.++.||.|.||+..+...+...+
T Consensus 3 ~yPW~~~~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~ll 49 (325)
T PRK06871 3 LYPWLQPTYQQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQWLM 49 (325)
T ss_pred CCcchHHHHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHHHHHc
Confidence 4678887776654 333 467999999999988776665544
No 381
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=93.55 E-value=0.36 Score=40.37 Aligned_cols=32 Identities=31% Similarity=0.347 Sum_probs=25.6
Q ss_pred EEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEE
Q 010357 59 VLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVL 99 (512)
Q Consensus 59 ~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil 99 (512)
+.|-.++|.|||.+++-.++....+ +.+++++
T Consensus 5 i~vy~g~G~Gkt~~a~g~~~ra~~~---------g~~v~~v 36 (159)
T cd00561 5 IQVYTGNGKGKTTAALGLALRALGH---------GYRVGVV 36 (159)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHC---------CCeEEEE
Confidence 5567788999999998888887755 7778884
No 382
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=93.54 E-value=0.93 Score=42.71 Aligned_cols=22 Identities=36% Similarity=0.394 Sum_probs=18.0
Q ss_pred CCCEEEEccCCChHhHHHHHHH
Q 010357 56 GRHVLVNAATGTGKTVAYLAPI 77 (512)
Q Consensus 56 ~~~~lv~~pTGsGKT~~~~~~~ 77 (512)
-+.+++.||+|+|||+.+=..+
T Consensus 185 PKGVLLYGPPGTGKTLLAkAVA 206 (406)
T COG1222 185 PKGVLLYGPPGTGKTLLAKAVA 206 (406)
T ss_pred CCceEeeCCCCCcHHHHHHHHH
Confidence 3679999999999998875544
No 383
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=93.50 E-value=1.6 Score=42.83 Aligned_cols=24 Identities=25% Similarity=0.249 Sum_probs=18.9
Q ss_pred CCEEEEccCCChHhHHHHHHHHHH
Q 010357 57 RHVLVNAATGTGKTVAYLAPIINH 80 (512)
Q Consensus 57 ~~~lv~~pTGsGKT~~~~~~~~~~ 80 (512)
+..++.||.|+|||..+...+...
T Consensus 37 ha~Lf~Gp~G~GKt~lA~~lA~~l 60 (394)
T PRK07940 37 HAWLFTGPPGSGRSVAARAFAAAL 60 (394)
T ss_pred eEEEEECCCCCcHHHHHHHHHHHh
Confidence 357899999999998877665544
No 384
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=93.46 E-value=0.19 Score=53.49 Aligned_cols=70 Identities=13% Similarity=0.229 Sum_probs=56.9
Q ss_pred cccCceEEEEeecchhhhhHHHhhhhhcCCCCCCChhHHHhhhhccceeeecCCCCHHHHHHHHHhhhcCCCcEEEeecc
Q 010357 316 TEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDV 395 (512)
Q Consensus 316 ~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~l~g~~~~~~r~~~~~~f~~~~~~vLvaT~~ 395 (512)
...++++++.+||...+...++.|.......+ .++..+. +||.|+.++++..+++|.+|+.+|||+|+.
T Consensus 122 a~kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~~----------~~~~~~~-yh~~l~~~ekee~le~i~~gdfdIlitTs~ 190 (1187)
T COG1110 122 AKKGKRVYIIVPTTTLVRQVYERLKKFAEDAG----------SLDVLVV-YHSALPTKEKEEALERIESGDFDILITTSQ 190 (1187)
T ss_pred HhcCCeEEEEecCHHHHHHHHHHHHHHHhhcC----------Ccceeee-eccccchHHHHHHHHHHhcCCccEEEEeHH
Confidence 34568999999999999999999987643221 0133444 899999999999999999999999999987
Q ss_pred c
Q 010357 396 A 396 (512)
Q Consensus 396 ~ 396 (512)
+
T Consensus 191 F 191 (1187)
T COG1110 191 F 191 (1187)
T ss_pred H
Confidence 4
No 385
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=93.44 E-value=1.3 Score=44.11 Aligned_cols=21 Identities=38% Similarity=0.423 Sum_probs=16.8
Q ss_pred CCEEEEccCCChHhHHHHHHH
Q 010357 57 RHVLVNAATGTGKTVAYLAPI 77 (512)
Q Consensus 57 ~~~lv~~pTGsGKT~~~~~~~ 77 (512)
+.+++++|+|+|||+.+-..+
T Consensus 338 KGVLLvGPPGTGKTlLARAvA 358 (752)
T KOG0734|consen 338 KGVLLVGPPGTGKTLLARAVA 358 (752)
T ss_pred CceEEeCCCCCchhHHHHHhh
Confidence 579999999999997764433
No 386
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=93.44 E-value=2.2 Score=40.01 Aligned_cols=60 Identities=20% Similarity=0.182 Sum_probs=34.4
Q ss_pred HHHHHHhhcCCCcCCceeEEEEcchhHHHhcCchHHHHHHHHHhccCCCCCCCCCCcccccceeEEEEEEecc
Q 010357 154 RLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLN 226 (512)
Q Consensus 154 ~l~~~l~~~~~~~~~~~~~lV~DEah~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~ 226 (512)
.++..+....... +.--.+|+||+|-.....+.-.+..+++...... .+..++++|..+.
T Consensus 123 ~lL~~L~~~~~~t-~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r------------~Piciig~Ttrld 182 (408)
T KOG2228|consen 123 KLLEALKKGDETT-SGKVIFILDEFDLFAPHSRQTLLYNLFDISQSAR------------APICIIGVTTRLD 182 (408)
T ss_pred HHHHHHhcCCCCC-CceEEEEeehhhccccchhhHHHHHHHHHHhhcC------------CCeEEEEeecccc
Confidence 4455555422222 2224689999997666656666666666554321 1566777776653
No 387
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=93.41 E-value=0.32 Score=46.49 Aligned_cols=20 Identities=30% Similarity=0.537 Sum_probs=17.1
Q ss_pred hcCCCEEEEccCCChHhHHH
Q 010357 54 LSGRHVLVNAATGTGKTVAY 73 (512)
Q Consensus 54 ~~~~~~lv~~pTGsGKT~~~ 73 (512)
..+.+++++|+||||||...
T Consensus 158 ~~~~nili~G~tgSGKTTll 177 (332)
T PRK13900 158 ISKKNIIISGGTSTGKTTFT 177 (332)
T ss_pred HcCCcEEEECCCCCCHHHHH
Confidence 36789999999999999664
No 388
>PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin. RAD3 is involved in nucleotide excision repair, and forms part of the transcription factor TFIIH in yeast [].; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 3CRV_A 3CRW_1 2VL7_A 4A15_A 2VSF_A.
Probab=93.35 E-value=0.048 Score=46.88 Aligned_cols=44 Identities=25% Similarity=0.280 Sum_probs=28.6
Q ss_pred HHHcCCCCEEEeCChHHHHHHhhcCC--CcCCceeEEEEcchhHHHh
Q 010357 139 ARLRKGISILVATPGRLLDHLKHTSS--FLHTNLRWIIFDEADRILE 183 (512)
Q Consensus 139 ~~~~~~~~Iiv~Tp~~l~~~l~~~~~--~~~~~~~~lV~DEah~l~~ 183 (512)
......+||||+++..|++....... +.+ .-.+|||||||.+.+
T Consensus 114 r~~~~~adivi~~y~yl~~~~~~~~~~~~~~-~~~ivI~DEAHNL~~ 159 (174)
T PF06733_consen 114 RELAKNADIVICNYNYLFDPSIRKSLFGIDL-KDNIVIFDEAHNLED 159 (174)
T ss_dssp HHCGGG-SEEEEETHHHHSHHHHHHHCT--C-CCEEEEETTGGGCGG
T ss_pred HHhcccCCEEEeCHHHHhhHHHHhhhccccc-cCcEEEEecccchHH
Confidence 34445689999999988765433222 222 446899999998765
No 389
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=93.35 E-value=0.75 Score=48.47 Aligned_cols=38 Identities=26% Similarity=0.187 Sum_probs=26.4
Q ss_pred CEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcHHH
Q 010357 58 HVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTREL 105 (512)
Q Consensus 58 ~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L 105 (512)
++++.||||.|||..+-..+...+. +...++-....+-
T Consensus 523 sFlF~GPTGVGKTELAkaLA~~Lfg----------~e~aliR~DMSEy 560 (786)
T COG0542 523 SFLFLGPTGVGKTELAKALAEALFG----------DEQALIRIDMSEY 560 (786)
T ss_pred EEEeeCCCcccHHHHHHHHHHHhcC----------CCccceeechHHH
Confidence 6799999999999887766655432 2335666665554
No 390
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.35 E-value=0.17 Score=51.99 Aligned_cols=22 Identities=23% Similarity=0.173 Sum_probs=18.2
Q ss_pred EEEEccCCChHhHHHHHHHHHH
Q 010357 59 VLVNAATGTGKTVAYLAPIINH 80 (512)
Q Consensus 59 ~lv~~pTGsGKT~~~~~~~~~~ 80 (512)
.|+.||.|+|||.++...+...
T Consensus 38 ~Lf~Gp~G~GKTt~A~~lAk~l 59 (584)
T PRK14952 38 YLFSGPRGCGKTSSARILARSL 59 (584)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5899999999998887766544
No 391
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.34 E-value=0.71 Score=45.00 Aligned_cols=24 Identities=33% Similarity=0.353 Sum_probs=19.2
Q ss_pred CCEEEEccCCChHhHHHHHHHHHH
Q 010357 57 RHVLVNAATGTGKTVAYLAPIINH 80 (512)
Q Consensus 57 ~~~lv~~pTGsGKT~~~~~~~~~~ 80 (512)
+.+++.+|.|+|||+..-..+.+.
T Consensus 187 rglLLfGPpgtGKtmL~~aiAsE~ 210 (428)
T KOG0740|consen 187 RGLLLFGPPGTGKTMLAKAIATES 210 (428)
T ss_pred chhheecCCCCchHHHHHHHHhhh
Confidence 467999999999998876666554
No 392
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.34 E-value=0.9 Score=47.34 Aligned_cols=23 Identities=22% Similarity=0.134 Sum_probs=18.3
Q ss_pred CEEEEccCCChHhHHHHHHHHHH
Q 010357 58 HVLVNAATGTGKTVAYLAPIINH 80 (512)
Q Consensus 58 ~~lv~~pTGsGKT~~~~~~~~~~ 80 (512)
..|+.||.|+|||.++...+...
T Consensus 40 a~Lf~Gp~G~GKTtlA~~lA~~l 62 (585)
T PRK14950 40 AYLFTGPRGVGKTSTARILAKAV 62 (585)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 35899999999998877766443
No 393
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=93.33 E-value=0.61 Score=44.95 Aligned_cols=24 Identities=21% Similarity=0.252 Sum_probs=18.5
Q ss_pred CEEEEccCCChHhHHHHHHHHHHH
Q 010357 58 HVLVNAATGTGKTVAYLAPIINHL 81 (512)
Q Consensus 58 ~~lv~~pTGsGKT~~~~~~~~~~~ 81 (512)
-.++.||.|+|||..+...+...+
T Consensus 47 a~L~~G~~G~GKttlA~~lA~~Ll 70 (351)
T PRK09112 47 ALLFEGPEGIGKATLAFHLANHIL 70 (351)
T ss_pred eEeeECCCCCCHHHHHHHHHHHHc
Confidence 478999999999987766555443
No 394
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=93.31 E-value=0.63 Score=45.11 Aligned_cols=25 Identities=20% Similarity=0.142 Sum_probs=19.7
Q ss_pred CEEEEccCCChHhHHHHHHHHHHHh
Q 010357 58 HVLVNAATGTGKTVAYLAPIINHLQ 82 (512)
Q Consensus 58 ~~lv~~pTGsGKT~~~~~~~~~~~~ 82 (512)
-.++.||.|+||+..+...+...+-
T Consensus 43 A~Lf~Gp~G~GK~~lA~~~A~~Llc 67 (365)
T PRK07471 43 AWLIGGPQGIGKATLAYRMARFLLA 67 (365)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhC
Confidence 4789999999999887766655553
No 395
>PF12846 AAA_10: AAA-like domain
Probab=93.30 E-value=0.14 Score=48.37 Aligned_cols=43 Identities=21% Similarity=0.346 Sum_probs=31.7
Q ss_pred CCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcHHHHH
Q 010357 56 GRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCL 107 (512)
Q Consensus 56 ~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~ 107 (512)
+.++++.|+||+|||......+.+.+.. +..++++=|..+...
T Consensus 1 n~h~~i~G~tGsGKT~~~~~l~~~~~~~---------g~~~~i~D~~g~~~~ 43 (304)
T PF12846_consen 1 NPHTLILGKTGSGKTTLLKNLLEQLIRR---------GPRVVIFDPKGDYSP 43 (304)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHc---------CCCEEEEcCCchHHH
Confidence 3589999999999998887666665554 666788866655433
No 396
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=93.25 E-value=0.79 Score=41.08 Aligned_cols=58 Identities=28% Similarity=0.352 Sum_probs=33.2
Q ss_pred CCcccCCCCHHHHHHHHHhcCCCCCcHHHHHHHHH-hhcCCCEEEEccCCChHhHHHHHHH
Q 010357 18 CSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPV-ILSGRHVLVNAATGTGKTVAYLAPI 77 (512)
Q Consensus 18 ~~~~~~~l~~~~~~~l~~~~~~~~~~~~Q~~~~~~-~~~~~~~lv~~pTGsGKT~~~~~~~ 77 (512)
.+|+..|-..+-...+.+.. +.|--+-++.+.. +---+.+++.+|+|+|||+++-..+
T Consensus 174 vty~dvggckeqieklrevv--e~pll~perfv~lgidppkgvllygppgtgktl~arava 232 (435)
T KOG0729|consen 174 VTYSDVGGCKEQIEKLREVV--ELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVA 232 (435)
T ss_pred cccccccchHHHHHHHHHHH--hccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHh
Confidence 35666655555555554432 2222222333322 2234679999999999999875543
No 397
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=93.23 E-value=0.77 Score=46.65 Aligned_cols=52 Identities=23% Similarity=0.176 Sum_probs=40.0
Q ss_pred cCCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHH
Q 010357 55 SGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKL 116 (512)
Q Consensus 55 ~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 116 (512)
.|.-+++.+|+|+|||...+..+.+.+.+ +.+++|++ .-+-..|+...+..+
T Consensus 262 ~gs~~li~G~~G~GKt~l~~~f~~~~~~~---------ge~~~y~s-~eEs~~~i~~~~~~l 313 (484)
T TIGR02655 262 KDSIILATGATGTGKTLLVSKFLENACAN---------KERAILFA-YEESRAQLLRNAYSW 313 (484)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHC---------CCeEEEEE-eeCCHHHHHHHHHHc
Confidence 45678999999999999988888877655 67788877 445566777766655
No 398
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=93.23 E-value=1.1 Score=48.30 Aligned_cols=26 Identities=19% Similarity=0.170 Sum_probs=20.4
Q ss_pred CCCEEEEccCCChHhHHHHHHHHHHH
Q 010357 56 GRHVLVNAATGTGKTVAYLAPIINHL 81 (512)
Q Consensus 56 ~~~~lv~~pTGsGKT~~~~~~~~~~~ 81 (512)
..|.++.||+|+|||..+-..+....
T Consensus 203 ~~n~lL~G~pG~GKT~l~~~la~~~~ 228 (731)
T TIGR02639 203 KNNPLLVGEPGVGKTAIAEGLALRIA 228 (731)
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHH
Confidence 35899999999999988766555443
No 399
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=93.19 E-value=1.4 Score=42.04 Aligned_cols=39 Identities=15% Similarity=-0.010 Sum_probs=28.9
Q ss_pred CcHHHHHHHHHhhc--C---CCEEEEccCCChHhHHHHHHHHHH
Q 010357 42 PTKVQAQAIPVILS--G---RHVLVNAATGTGKTVAYLAPIINH 80 (512)
Q Consensus 42 ~~~~Q~~~~~~~~~--~---~~~lv~~pTGsGKT~~~~~~~~~~ 80 (512)
.+|||+..+..+.+ + +..++.||.|.|||..+...+...
T Consensus 2 ~yPW~~~~w~~l~~~~~r~~hA~Lf~G~~G~GK~~la~~~a~~l 45 (325)
T PRK08699 2 IYPWHQEQWRQIAEHWERRPNAWLFAGKKGIGKTAFARFAAQAL 45 (325)
T ss_pred CCCccHHHHHHHHHhcCCcceEEEeECCCCCCHHHHHHHHHHHH
Confidence 36888888877763 2 247899999999998876665443
No 400
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=93.16 E-value=1.4 Score=43.28 Aligned_cols=25 Identities=24% Similarity=0.205 Sum_probs=19.4
Q ss_pred CCCEEEEccCCChHhHHHHHHHHHH
Q 010357 56 GRHVLVNAATGTGKTVAYLAPIINH 80 (512)
Q Consensus 56 ~~~~lv~~pTGsGKT~~~~~~~~~~ 80 (512)
++.+.+.||||+|||......+...
T Consensus 191 g~vi~lvGpnG~GKTTtlakLA~~~ 215 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAKLAARA 215 (420)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4557899999999998877665543
No 401
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=93.12 E-value=0.55 Score=45.40 Aligned_cols=45 Identities=18% Similarity=0.203 Sum_probs=29.4
Q ss_pred ceeEEEEcchhHHHhcCchHHHHHHHHHhccCCCCCCCCCCcccccceeEEEEEEecchh
Q 010357 169 NLRWIIFDEADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEK 228 (512)
Q Consensus 169 ~~~~lV~DEah~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~ 228 (512)
...+|.|||+| +.+.+-.-.+..++..+-.. ..-+|..|.+.|..
T Consensus 127 ~~~lLcfDEF~-V~DiaDAmil~rLf~~l~~~--------------gvvlVaTSN~~P~~ 171 (362)
T PF03969_consen 127 ESRLLCFDEFQ-VTDIADAMILKRLFEALFKR--------------GVVLVATSNRPPED 171 (362)
T ss_pred cCCEEEEeeee-ccchhHHHHHHHHHHHHHHC--------------CCEEEecCCCChHH
Confidence 56689999999 44544455566666655432 56677777777653
No 402
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=93.12 E-value=1.1 Score=48.69 Aligned_cols=34 Identities=15% Similarity=0.290 Sum_probs=24.1
Q ss_pred HHHHHHHhh----c--CCCEEEEccCCChHhHHHHHHHHH
Q 010357 46 QAQAIPVIL----S--GRHVLVNAATGTGKTVAYLAPIIN 79 (512)
Q Consensus 46 Q~~~~~~~~----~--~~~~lv~~pTGsGKT~~~~~~~~~ 79 (512)
|..-+..+. . ..|.++.||.|+|||..+-..+..
T Consensus 192 r~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~~~La~~ 231 (852)
T TIGR03345 192 RDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVVEGLALR 231 (852)
T ss_pred CHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHHHHHHHH
Confidence 666565544 2 358999999999999887555443
No 403
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=93.09 E-value=0.67 Score=47.57 Aligned_cols=23 Identities=17% Similarity=0.070 Sum_probs=18.7
Q ss_pred CEEEEccCCChHhHHHHHHHHHH
Q 010357 58 HVLVNAATGTGKTVAYLAPIINH 80 (512)
Q Consensus 58 ~~lv~~pTGsGKT~~~~~~~~~~ 80 (512)
..|+.||.|+|||..+...+...
T Consensus 40 A~Lf~GP~GvGKTTlA~~lAk~L 62 (605)
T PRK05896 40 AYIFSGPRGIGKTSIAKIFAKAI 62 (605)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999998877766544
No 404
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=93.05 E-value=0.6 Score=46.81 Aligned_cols=51 Identities=16% Similarity=0.046 Sum_probs=32.0
Q ss_pred hcCCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcHHHHHHHHHHH
Q 010357 54 LSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEIL 113 (512)
Q Consensus 54 ~~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~ 113 (512)
..|.-+++.|+||+|||..++-.+.+.... .+..+++++.- .-..|+...+
T Consensus 193 ~~G~l~vi~g~pg~GKT~~~l~~a~~~a~~--------~g~~vl~~SlE-m~~~~i~~R~ 243 (434)
T TIGR00665 193 QPSDLIILAARPSMGKTAFALNIAENAAIK--------EGKPVAFFSLE-MSAEQLAMRM 243 (434)
T ss_pred CCCeEEEEEeCCCCChHHHHHHHHHHHHHh--------CCCeEEEEeCc-CCHHHHHHHH
Confidence 345567899999999998877776665432 24557776533 2233444433
No 405
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.94 E-value=0.68 Score=47.28 Aligned_cols=22 Identities=23% Similarity=0.090 Sum_probs=18.1
Q ss_pred EEEEccCCChHhHHHHHHHHHH
Q 010357 59 VLVNAATGTGKTVAYLAPIINH 80 (512)
Q Consensus 59 ~lv~~pTGsGKT~~~~~~~~~~ 80 (512)
.|+.||.|+|||..+...+...
T Consensus 41 ~Lf~Gp~GvGKTTlAr~lAk~L 62 (546)
T PRK14957 41 YLFTGTRGVGKTTLGRLLAKCL 62 (546)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6899999999998887766544
No 406
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=92.94 E-value=0.5 Score=51.62 Aligned_cols=98 Identities=11% Similarity=0.087 Sum_probs=72.8
Q ss_pred CchHHHHHHHHHhhhccccCceEEEEeecchhhhhHHHhhhhhcCCCCCCChhHHHhhhhccceeeecCCCCHHHHHHHH
Q 010357 300 GSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTF 379 (512)
Q Consensus 300 ~~k~~~l~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~l~g~~~~~~r~~~~ 379 (512)
..|..+....+.... ..+.+++|.+||+..+...++.++...... +..+..++|..+..++..++
T Consensus 483 sGKT~val~a~l~al--~~g~qvlvLvPT~~LA~Q~~~~f~~~~~~~-------------~i~v~~Lsg~~~~~e~~~~~ 547 (926)
T TIGR00580 483 FGKTEVAMRAAFKAV--LDGKQVAVLVPTTLLAQQHFETFKERFANF-------------PVTIELLSRFRSAKEQNEIL 547 (926)
T ss_pred ccHHHHHHHHHHHHH--HhCCeEEEEeCcHHHHHHHHHHHHHHhccC-------------CcEEEEEeccccHHHHHHHH
Confidence 455554433332222 235789999999999999999887753211 55778899999999999999
Q ss_pred HhhhcCCCcEEEeecc-cccCCCCCCCcEEEEeC
Q 010357 380 GAFKTEKKALLLSTDV-AARGLDFPKVKCIIQYD 412 (512)
Q Consensus 380 ~~f~~~~~~vLvaT~~-~~~Gldip~~~~VI~~~ 412 (512)
+.+.+|+.+|+|+|.. +...+.+.++.++|.-.
T Consensus 548 ~~l~~g~~dIVIGTp~ll~~~v~f~~L~llVIDE 581 (926)
T TIGR00580 548 KELASGKIDILIGTHKLLQKDVKFKDLGLLIIDE 581 (926)
T ss_pred HHHHcCCceEEEchHHHhhCCCCcccCCEEEeec
Confidence 9999999999999974 45567888888887533
No 407
>PRK04841 transcriptional regulator MalT; Provisional
Probab=92.94 E-value=0.25 Score=54.89 Aligned_cols=41 Identities=15% Similarity=0.168 Sum_probs=30.7
Q ss_pred eEEEEcchhHHHhcCchHHHHHHHHHhccCCCCCCCCCCcccccceeEEEEEEecc
Q 010357 171 RWIIFDEADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLN 226 (512)
Q Consensus 171 ~~lV~DEah~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~ 226 (512)
-+||+|++|.+.+......+..++...+. ...+|+.|-+.+
T Consensus 123 ~~lvlDD~h~~~~~~~~~~l~~l~~~~~~---------------~~~lv~~sR~~~ 163 (903)
T PRK04841 123 LYLVIDDYHLITNPEIHEAMRFFLRHQPE---------------NLTLVVLSRNLP 163 (903)
T ss_pred EEEEEeCcCcCCChHHHHHHHHHHHhCCC---------------CeEEEEEeCCCC
Confidence 48999999988665556677777877665 677877777743
No 408
>PRK08006 replicative DNA helicase; Provisional
Probab=92.91 E-value=1 Score=45.34 Aligned_cols=149 Identities=18% Similarity=0.114 Sum_probs=73.0
Q ss_pred HhhcCCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHHhhcCCcceEEEeCC
Q 010357 52 VILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGG 131 (512)
Q Consensus 52 ~~~~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~g 131 (512)
.+..|.-+++.|.+|.|||..++-.+.+.... .+..++|++.= .-..|+...+-..... +....+..|
T Consensus 220 Gl~~G~LiiIaarPgmGKTafalnia~~~a~~--------~g~~V~~fSlE-M~~~ql~~Rlla~~~~---v~~~~i~~~ 287 (471)
T PRK08006 220 GLQPSDLIIVAARPSMGKTTFAMNLCENAAML--------QDKPVLIFSLE-MPGEQIMMRMLASLSR---VDQTRIRTG 287 (471)
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHh--------cCCeEEEEecc-CCHHHHHHHHHHHhcC---CCHHHhhcC
Confidence 33445567889999999998877666665432 14456666432 3334444443322211 111112222
Q ss_pred CchHHHHHH-------HcCCCCEEEe-----CChHHHHHHhhcCCCcCCceeEEEEcchhHHHhc----CchHHHHHHHH
Q 010357 132 ENRSKEKAR-------LRKGISILVA-----TPGRLLDHLKHTSSFLHTNLRWIIFDEADRILEL----GFGKEIEEILD 195 (512)
Q Consensus 132 ~~~~~~~~~-------~~~~~~Iiv~-----Tp~~l~~~l~~~~~~~~~~~~~lV~DEah~l~~~----~~~~~~~~i~~ 195 (512)
.-....+.. +.....+.|- |+..+......... ....+++||||=.|.+... +....+..+.+
T Consensus 288 ~l~~~e~~~~~~a~~~~~~~~~l~I~d~~~~t~~~i~~~~r~~~~-~~~~~~lvvIDYLqli~~~~~~~~r~~ei~~isr 366 (471)
T PRK08006 288 QLDDEDWARISGTMGILLEKRNMYIDDSSGLTPTEVRSRARRIFR-EHGGLSLIMIDYLQLMRVPSLSDNRTLEIAEISR 366 (471)
T ss_pred CCCHHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHH-hcCCCCEEEEccHHHccCCCCCCCcHHHHHHHHH
Confidence 222223222 2133445553 23333332222111 1125789999999987532 23445566655
Q ss_pred HhccCCCCCCCCCCcccccceeEEEEEE
Q 010357 196 ILGSRNIGSIGEGNEVSNVKRQNLLLSA 223 (512)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~i~~SA 223 (512)
.++...... +..++++|-
T Consensus 367 ~LK~lAkel----------~ipVi~LsQ 384 (471)
T PRK08006 367 SLKALAKEL----------QVPVVALSQ 384 (471)
T ss_pred HHHHHHHHh----------CCeEEEEEe
Confidence 555432211 566777763
No 409
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.90 E-value=2.1 Score=44.55 Aligned_cols=22 Identities=27% Similarity=0.203 Sum_probs=17.8
Q ss_pred EEEEccCCChHhHHHHHHHHHH
Q 010357 59 VLVNAATGTGKTVAYLAPIINH 80 (512)
Q Consensus 59 ~lv~~pTGsGKT~~~~~~~~~~ 80 (512)
.|+.||.|+|||.++...+...
T Consensus 41 yLf~Gp~G~GKtt~A~~lak~l 62 (576)
T PRK14965 41 FLFTGARGVGKTSTARILAKAL 62 (576)
T ss_pred EEEECCCCCCHHHHHHHHHHhh
Confidence 5899999999998887765443
No 410
>PRK08506 replicative DNA helicase; Provisional
Probab=92.88 E-value=0.46 Score=47.98 Aligned_cols=49 Identities=16% Similarity=0.149 Sum_probs=32.4
Q ss_pred cCCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcHHHHHHHHHHH
Q 010357 55 SGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEIL 113 (512)
Q Consensus 55 ~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~ 113 (512)
.|.-+++.|.||.|||..++-.+.+...+ +..++|++.= .-..|+...+
T Consensus 191 ~G~LivIaarpg~GKT~fal~ia~~~~~~---------g~~V~~fSlE-Ms~~ql~~Rl 239 (472)
T PRK08506 191 KGDLIIIAARPSMGKTTLCLNMALKALNQ---------DKGVAFFSLE-MPAEQLMLRM 239 (472)
T ss_pred CCceEEEEcCCCCChHHHHHHHHHHHHhc---------CCcEEEEeCc-CCHHHHHHHH
Confidence 45567889999999998888777766433 4557776432 3344554444
No 411
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=92.83 E-value=0.42 Score=49.13 Aligned_cols=68 Identities=21% Similarity=0.340 Sum_probs=46.2
Q ss_pred EEEeCCCchHHHHHHHcCCCCEEEeCChHHHHHHhhcCCCcCCceeEEEEcchhHHHhcCchHHHHHHHHHhcc
Q 010357 126 GYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILGS 199 (512)
Q Consensus 126 ~~~~~g~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lV~DEah~l~~~~~~~~~~~i~~~~~~ 199 (512)
....||.....+++.-++ .-+=+.|+++...+...+..+ -++++||+|.|.....+.-...++.-+.+
T Consensus 380 R~sLGGvrDEAEIRGHRR--TYIGamPGrIiQ~mkka~~~N----Pv~LLDEIDKm~ss~rGDPaSALLEVLDP 447 (782)
T COG0466 380 RISLGGVRDEAEIRGHRR--TYIGAMPGKIIQGMKKAGVKN----PVFLLDEIDKMGSSFRGDPASALLEVLDP 447 (782)
T ss_pred EEecCccccHHHhccccc--cccccCChHHHHHHHHhCCcC----CeEEeechhhccCCCCCChHHHHHhhcCH
Confidence 345566665554433222 244467999999988765543 37999999999888777777777776653
No 412
>CHL00095 clpC Clp protease ATP binding subunit
Probab=92.81 E-value=1.6 Score=47.64 Aligned_cols=26 Identities=15% Similarity=0.125 Sum_probs=20.5
Q ss_pred CCCEEEEccCCChHhHHHHHHHHHHH
Q 010357 56 GRHVLVNAATGTGKTVAYLAPIINHL 81 (512)
Q Consensus 56 ~~~~lv~~pTGsGKT~~~~~~~~~~~ 81 (512)
.++.++.||+|+|||..+-..+....
T Consensus 200 ~~n~lL~G~pGvGKTal~~~la~~i~ 225 (821)
T CHL00095 200 KNNPILIGEPGVGKTAIAEGLAQRIV 225 (821)
T ss_pred cCCeEEECCCCCCHHHHHHHHHHHHH
Confidence 35899999999999988766655543
No 413
>PHA03372 DNA packaging terminase subunit 1; Provisional
Probab=92.77 E-value=4.8 Score=41.08 Aligned_cols=155 Identities=17% Similarity=0.140 Sum_probs=87.7
Q ss_pred HHHHHHHHhcCCCCCcHHHHHHHHHhhcCCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcHHHHH
Q 010357 28 TLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCL 107 (512)
Q Consensus 28 ~~~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~ 107 (512)
.+.+.++..|++..+.+- .+.. .+.+-.+..-|-=-|||+.....+.-.+.+ -.+-++.|++.-+..++
T Consensus 178 r~~~~lk~~Fdi~~~s~~---~l~~-FKQkaTVFLVPRRHGKTWf~VpiIsllL~s-------~~gI~IGYvAHqKhvs~ 246 (668)
T PHA03372 178 RVLEYLLHVFDIEFLSES---SLNI-FKQKATVFLVPRRHGKTWFIIPIISFLLKN-------IIGISIGYVAHQKHVSQ 246 (668)
T ss_pred HHHHHHHHHcCCcccCHH---HHHH-hhccceEEEecccCCceehHHHHHHHHHHh-------hcCceEEEEeeHHHHHH
Confidence 444555555555544432 2222 344567778899999998765555544443 34778999999998888
Q ss_pred HHHHHHHHHHhh-cCCcceEEEeCCCchHHHHHHHcCCCCEEEeCChHH----HHHHhhcCCCcCCceeEEEEcchhHHH
Q 010357 108 QVYEILHKLLHR-FHWIVPGYVMGGENRSKEKARLRKGISILVATPGRL----LDHLKHTSSFLHTNLRWIIFDEADRIL 182 (512)
Q Consensus 108 q~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~Iiv~Tp~~l----~~~l~~~~~~~~~~~~~lV~DEah~l~ 182 (512)
-+.+++..-+.. ++...+... ++-.|.+.-|+.= .-...+.+..--+.++++++||||-+
T Consensus 247 ~Vf~EI~~~lrrwF~~~~vi~~--------------k~~tI~~s~pg~Kst~~fasc~n~NsiRGQ~fnll~VDEA~FI- 311 (668)
T PHA03372 247 FVLKEVEFRCRRMFPRKHTIEN--------------KDNVISIDHRGAKSTALFASCYNTNSIRGQNFHLLLVDEAHFI- 311 (668)
T ss_pred HHHHHHHHHHhhhcCccceeee--------------cCcEEEEecCCCcceeeehhhccCccccCCCCCEEEEehhhcc-
Confidence 777666543322 221111111 1113444444221 10111222333346889999999975
Q ss_pred hcCchHHHHHHHHHhccCCCCCCCCCCcccccceeEEEEEEec
Q 010357 183 ELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATL 225 (512)
Q Consensus 183 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~ 225 (512)
....+..++..+.-. ..++|+.|.|-
T Consensus 312 ---~~~a~~tilgfm~q~--------------~~KiIfISS~N 337 (668)
T PHA03372 312 ---KKDAFNTILGFLAQN--------------TTKIIFISSTN 337 (668)
T ss_pred ---CHHHHHHhhhhhccc--------------CceEEEEeCCC
Confidence 345666776666532 67888888774
No 414
>PRK06321 replicative DNA helicase; Provisional
Probab=92.76 E-value=0.94 Score=45.58 Aligned_cols=129 Identities=14% Similarity=0.122 Sum_probs=62.3
Q ss_pred cCCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHHhhcCCcceEEEeCCCch
Q 010357 55 SGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENR 134 (512)
Q Consensus 55 ~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~g~~~ 134 (512)
.|.=++|.|.+|.|||..++-.+.+.... .+..++|++. -.-..|+...+-.... + +....+..+.-.
T Consensus 225 ~G~LiiiaarPgmGKTafal~ia~~~a~~--------~g~~v~~fSL-EMs~~ql~~Rlla~~s--~-v~~~~i~~~~l~ 292 (472)
T PRK06321 225 PSNLMILAARPAMGKTALALNIAENFCFQ--------NRLPVGIFSL-EMTVDQLIHRIICSRS--E-VESKKISVGDLS 292 (472)
T ss_pred CCcEEEEEeCCCCChHHHHHHHHHHHHHh--------cCCeEEEEec-cCCHHHHHHHHHHhhc--C-CCHHHhhcCCCC
Confidence 34456889999999998877655544322 1444666642 2223344443322211 1 111112222222
Q ss_pred HHHHH-------HHcCCCCEEEe-----CChHHHHHHhhcCCCcCCceeEEEEcchhHHHhcC-------chHHHHHHHH
Q 010357 135 SKEKA-------RLRKGISILVA-----TPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELG-------FGKEIEEILD 195 (512)
Q Consensus 135 ~~~~~-------~~~~~~~Iiv~-----Tp~~l~~~l~~~~~~~~~~~~~lV~DEah~l~~~~-------~~~~~~~i~~ 195 (512)
...+. .+. ...+.|- |.+.+......... -.++++||||=.+.+...+ ....+..+.+
T Consensus 293 ~~e~~~~~~a~~~l~-~~~~~idd~~~~ti~~i~~~~r~~~~--~~~~~lvvIDyLql~~~~~~~~~~~~r~~ei~~Isr 369 (472)
T PRK06321 293 GRDFQRIVSVVNEMQ-EHTLLIDDQPGLKITDLRARARRMKE--SYDIQFLIIDYLQLLSGSGNLRNSESRQTEISEISR 369 (472)
T ss_pred HHHHHHHHHHHHHHH-cCCEEEeCCCCCCHHHHHHHHHHHHH--hcCCCEEEEcchHHcCCCCccCCcchHHHHHHHHHH
Confidence 22332 222 2345554 33344333332111 1257899999999875321 2344555555
Q ss_pred Hhc
Q 010357 196 ILG 198 (512)
Q Consensus 196 ~~~ 198 (512)
.++
T Consensus 370 ~LK 372 (472)
T PRK06321 370 MLK 372 (472)
T ss_pred HHH
Confidence 554
No 415
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=92.75 E-value=0.24 Score=45.62 Aligned_cols=38 Identities=13% Similarity=0.161 Sum_probs=30.1
Q ss_pred cCCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcC
Q 010357 55 SGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVP 101 (512)
Q Consensus 55 ~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P 101 (512)
.|.-++|.|++|+|||..++..+.+.+.+ +.+++|++-
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~a~~---------Ge~vlyis~ 72 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQASR---------GNPVLFVTV 72 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhC---------CCcEEEEEe
Confidence 45678999999999999888877776544 667888873
No 416
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.75 E-value=2.5 Score=41.77 Aligned_cols=24 Identities=21% Similarity=0.077 Sum_probs=19.1
Q ss_pred CEEEEccCCChHhHHHHHHHHHHH
Q 010357 58 HVLVNAATGTGKTVAYLAPIINHL 81 (512)
Q Consensus 58 ~~lv~~pTGsGKT~~~~~~~~~~~ 81 (512)
..|++||.|+|||.++...+....
T Consensus 40 a~lf~Gp~G~GKtt~A~~~a~~l~ 63 (397)
T PRK14955 40 GYIFSGLRGVGKTTAARVFAKAVN 63 (397)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhc
Confidence 378999999999988877665543
No 417
>PRK10867 signal recognition particle protein; Provisional
Probab=92.73 E-value=0.84 Score=45.17 Aligned_cols=22 Identities=18% Similarity=0.141 Sum_probs=18.1
Q ss_pred EEEEccCCChHhHHHHHHHHHH
Q 010357 59 VLVNAATGTGKTVAYLAPIINH 80 (512)
Q Consensus 59 ~lv~~pTGsGKT~~~~~~~~~~ 80 (512)
+++++++|+|||.++.-.+...
T Consensus 103 I~~vG~~GsGKTTtaakLA~~l 124 (433)
T PRK10867 103 IMMVGLQGAGKTTTAGKLAKYL 124 (433)
T ss_pred EEEECCCCCcHHHHHHHHHHHH
Confidence 5789999999998887766654
No 418
>PRK08760 replicative DNA helicase; Provisional
Probab=92.69 E-value=0.72 Score=46.54 Aligned_cols=130 Identities=18% Similarity=0.106 Sum_probs=64.5
Q ss_pred cCCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHHhhcCCcceEEEeCCCch
Q 010357 55 SGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENR 134 (512)
Q Consensus 55 ~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~g~~~ 134 (512)
.|.-++|.|.||.|||..++-.+.+.... .+..++|++.= .-..|+...+......... ..+..|...
T Consensus 228 ~G~LivIaarPg~GKTafal~iA~~~a~~--------~g~~V~~fSlE-Ms~~ql~~Rl~a~~s~i~~---~~i~~g~l~ 295 (476)
T PRK08760 228 PTDLIILAARPAMGKTTFALNIAEYAAIK--------SKKGVAVFSME-MSASQLAMRLISSNGRINA---QRLRTGALE 295 (476)
T ss_pred CCceEEEEeCCCCChhHHHHHHHHHHHHh--------cCCceEEEecc-CCHHHHHHHHHHhhCCCcH---HHHhcCCCC
Confidence 45557889999999998887777665432 14446666432 2234555544433211111 111122222
Q ss_pred HHHHH-------HHcCCCCEEEe-----CChHHHHHHhhcCCCcCCceeEEEEcchhHHHhc----CchHHHHHHHHHhc
Q 010357 135 SKEKA-------RLRKGISILVA-----TPGRLLDHLKHTSSFLHTNLRWIIFDEADRILEL----GFGKEIEEILDILG 198 (512)
Q Consensus 135 ~~~~~-------~~~~~~~Iiv~-----Tp~~l~~~l~~~~~~~~~~~~~lV~DEah~l~~~----~~~~~~~~i~~~~~ 198 (512)
...+. .+. ...+.|. |++.+...+..... ...+++||||=.+.+... .....+..+.+.++
T Consensus 296 ~~e~~~~~~a~~~l~-~~~l~I~d~~~~t~~~I~~~~r~l~~--~~~~~lVvIDyLql~~~~~~~~~r~~ei~~Isr~LK 372 (476)
T PRK08760 296 DEDWARVTGAIKMLK-ETKIFIDDTPGVSPEVLRSKCRRLKR--EHDLGLIVIDYLQLMSVPGNSENRATEISEISRSLK 372 (476)
T ss_pred HHHHHHHHHHHHHHh-cCCEEEeCCCCCCHHHHHHHHHHHHH--hcCCCEEEEecHHhcCCCCCCcccHHHHHHHHHHHH
Confidence 22221 222 2345543 23444333332111 125789999999977422 23344555555544
Q ss_pred c
Q 010357 199 S 199 (512)
Q Consensus 199 ~ 199 (512)
.
T Consensus 373 ~ 373 (476)
T PRK08760 373 G 373 (476)
T ss_pred H
Confidence 3
No 419
>PRK04328 hypothetical protein; Provisional
Probab=92.67 E-value=0.22 Score=45.61 Aligned_cols=52 Identities=25% Similarity=0.285 Sum_probs=36.3
Q ss_pred cCCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHH
Q 010357 55 SGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKL 116 (512)
Q Consensus 55 ~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 116 (512)
.|..+++.+|+|+|||..++..+.+.+.+ +.+++|++- .+-..+..+.+..+
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~~~~~---------ge~~lyis~-ee~~~~i~~~~~~~ 73 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWNGLQM---------GEPGVYVAL-EEHPVQVRRNMRQF 73 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhc---------CCcEEEEEe-eCCHHHHHHHHHHc
Confidence 45678999999999999888877777655 666888763 23344444444443
No 420
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=92.65 E-value=0.2 Score=47.94 Aligned_cols=44 Identities=23% Similarity=0.322 Sum_probs=29.0
Q ss_pred hhcCCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcHHHH
Q 010357 53 ILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELC 106 (512)
Q Consensus 53 ~~~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~ 106 (512)
+..+.+++++||||||||...-. ++..+. ...+++.+=.+.+|.
T Consensus 159 v~~~~nilI~G~tGSGKTTll~a-Ll~~i~---------~~~rivtiEd~~El~ 202 (344)
T PRK13851 159 VVGRLTMLLCGPTGSGKTTMSKT-LISAIP---------PQERLITIEDTLELV 202 (344)
T ss_pred HHcCCeEEEECCCCccHHHHHHH-HHcccC---------CCCCEEEECCCcccc
Confidence 34678999999999999966433 233221 144577777776653
No 421
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=92.64 E-value=0.88 Score=49.77 Aligned_cols=24 Identities=17% Similarity=0.127 Sum_probs=19.0
Q ss_pred CCEEEEccCCChHhHHHHHHHHHH
Q 010357 57 RHVLVNAATGTGKTVAYLAPIINH 80 (512)
Q Consensus 57 ~~~lv~~pTGsGKT~~~~~~~~~~ 80 (512)
++.++.||+|+|||..+-..+...
T Consensus 195 ~n~lL~G~pGvGKT~l~~~la~~i 218 (852)
T TIGR03346 195 NNPVLIGEPGVGKTAIVEGLAQRI 218 (852)
T ss_pred CceEEEcCCCCCHHHHHHHHHHHH
Confidence 589999999999998876554443
No 422
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.64 E-value=0.65 Score=47.93 Aligned_cols=23 Identities=22% Similarity=0.118 Sum_probs=19.0
Q ss_pred CEEEEccCCChHhHHHHHHHHHH
Q 010357 58 HVLVNAATGTGKTVAYLAPIINH 80 (512)
Q Consensus 58 ~~lv~~pTGsGKT~~~~~~~~~~ 80 (512)
.+|+.+|.|+|||.++...+...
T Consensus 40 a~Lf~GPpG~GKTtiArilAk~L 62 (624)
T PRK14959 40 AYLFSGTRGVGKTTIARIFAKAL 62 (624)
T ss_pred eEEEECCCCCCHHHHHHHHHHhc
Confidence 47899999999999987766554
No 423
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=92.60 E-value=2 Score=43.88 Aligned_cols=61 Identities=23% Similarity=0.295 Sum_probs=38.9
Q ss_pred ccCCcccCCCCHHHHHHHHHhc--CCCCCcHHHHHHHHHhhcCCCEEEEccCCChHhHHHHHHHHH
Q 010357 16 ASCSFSSLGLHSTLCDQLRERL--GFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIIN 79 (512)
Q Consensus 16 ~~~~~~~~~l~~~~~~~l~~~~--~~~~~~~~Q~~~~~~~~~~~~~lv~~pTGsGKT~~~~~~~~~ 79 (512)
..-+|++.|=-+++.+.|++.. +...|-.+.+-. +..-+.+|+.+|+|+|||+++-..+-+
T Consensus 429 p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~G---i~ppkGVLlyGPPGC~KT~lAkalAne 491 (693)
T KOG0730|consen 429 PNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFG---ISPPKGVLLYGPPGCGKTLLAKALANE 491 (693)
T ss_pred CCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhc---CCCCceEEEECCCCcchHHHHHHHhhh
Confidence 3458888887778887776532 222333333222 123467999999999999887655544
No 424
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.58 E-value=2.1 Score=41.84 Aligned_cols=19 Identities=26% Similarity=0.279 Sum_probs=16.1
Q ss_pred CEEEEccCCChHhHHHHHH
Q 010357 58 HVLVNAATGTGKTVAYLAP 76 (512)
Q Consensus 58 ~~lv~~pTGsGKT~~~~~~ 76 (512)
.+++.||.|+|||..+...
T Consensus 41 ~~L~~G~~G~GKt~~a~~l 59 (367)
T PRK14970 41 ALLFCGPRGVGKTTCARIL 59 (367)
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6889999999999776655
No 425
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.57 E-value=0.43 Score=48.81 Aligned_cols=22 Identities=23% Similarity=0.164 Sum_probs=17.8
Q ss_pred EEEEccCCChHhHHHHHHHHHH
Q 010357 59 VLVNAATGTGKTVAYLAPIINH 80 (512)
Q Consensus 59 ~lv~~pTGsGKT~~~~~~~~~~ 80 (512)
.|+.||.|+|||.++...+...
T Consensus 41 ~Lf~Gp~G~GKTt~A~~lAk~l 62 (527)
T PRK14969 41 YLFTGTRGVGKTTLARILAKSL 62 (527)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5899999999998877765543
No 426
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=92.56 E-value=0.9 Score=45.53 Aligned_cols=51 Identities=18% Similarity=0.173 Sum_probs=34.5
Q ss_pred cCCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHH
Q 010357 55 SGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHK 115 (512)
Q Consensus 55 ~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~ 115 (512)
.|.-+++.+++|+|||...+..+.+.... +.+++|+..- +-..|+......
T Consensus 93 ~GsvilI~G~pGsGKTTL~lq~a~~~a~~---------g~kvlYvs~E-Es~~qi~~ra~r 143 (454)
T TIGR00416 93 PGSLILIGGDPGIGKSTLLLQVACQLAKN---------QMKVLYVSGE-ESLQQIKMRAIR 143 (454)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHhc---------CCcEEEEECc-CCHHHHHHHHHH
Confidence 34567999999999998888776665432 4568888754 334555544443
No 427
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.54 E-value=2.4 Score=44.31 Aligned_cols=25 Identities=24% Similarity=0.129 Sum_probs=19.7
Q ss_pred CCEEEEccCCChHhHHHHHHHHHHH
Q 010357 57 RHVLVNAATGTGKTVAYLAPIINHL 81 (512)
Q Consensus 57 ~~~lv~~pTGsGKT~~~~~~~~~~~ 81 (512)
...|+.||.|+|||.++...+....
T Consensus 39 ~a~Lf~Gp~G~GKttlA~~lAk~L~ 63 (620)
T PRK14948 39 PAYLFTGPRGTGKTSSARILAKSLN 63 (620)
T ss_pred ceEEEECCCCCChHHHHHHHHHHhc
Confidence 3569999999999988777665543
No 428
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=92.38 E-value=0.51 Score=42.52 Aligned_cols=19 Identities=32% Similarity=0.564 Sum_probs=15.4
Q ss_pred CCCEEEEccCCChHhHHHH
Q 010357 56 GRHVLVNAATGTGKTVAYL 74 (512)
Q Consensus 56 ~~~~lv~~pTGsGKT~~~~ 74 (512)
++.++|.||-|+|||...-
T Consensus 20 ~~~~~l~G~rg~GKTsLl~ 38 (234)
T PF01637_consen 20 SQHILLYGPRGSGKTSLLK 38 (234)
T ss_dssp SSEEEEEESTTSSHHHHHH
T ss_pred CcEEEEEcCCcCCHHHHHH
Confidence 3678899999999997543
No 429
>PRK07004 replicative DNA helicase; Provisional
Probab=92.35 E-value=0.52 Score=47.38 Aligned_cols=133 Identities=17% Similarity=0.093 Sum_probs=63.9
Q ss_pred hhcCCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHHhhcCCcceEEEeCCC
Q 010357 53 ILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGE 132 (512)
Q Consensus 53 ~~~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~g~ 132 (512)
+..|.-+++.|.||+|||..++-.+.+.... .+..+++++. -.-..|+...+-..... +....+..|.
T Consensus 210 ~~~g~liviaarpg~GKT~~al~ia~~~a~~--------~~~~v~~fSl-EM~~~ql~~R~la~~~~---v~~~~i~~g~ 277 (460)
T PRK07004 210 MHGGELIIVAGRPSMGKTAFSMNIGEYVAVE--------YGLPVAVFSM-EMPGTQLAMRMLGSVGR---LDQHRMRTGR 277 (460)
T ss_pred CCCCceEEEEeCCCCCccHHHHHHHHHHHHH--------cCCeEEEEeC-CCCHHHHHHHHHHhhcC---CCHHHHhcCC
Confidence 3345567889999999998877666554432 2445666642 22233444333221111 1111111222
Q ss_pred chHHHHH-------HHcCCCCEEEe-CC----hHHHHHHhhcCCCcCCceeEEEEcchhHHHhc----CchHHHHHHHHH
Q 010357 133 NRSKEKA-------RLRKGISILVA-TP----GRLLDHLKHTSSFLHTNLRWIIFDEADRILEL----GFGKEIEEILDI 196 (512)
Q Consensus 133 ~~~~~~~-------~~~~~~~Iiv~-Tp----~~l~~~l~~~~~~~~~~~~~lV~DEah~l~~~----~~~~~~~~i~~~ 196 (512)
-....+. .+. ...+.|. +| ..+.....+.... ...+++||+|=.+.+... +....+..+.+.
T Consensus 278 l~~~e~~~~~~a~~~l~-~~~l~I~d~~~~~~~~i~~~~r~l~~~-~~~~~lviIDYLql~~~~~~~~~r~~ei~~Isr~ 355 (460)
T PRK07004 278 LTDEDWPKLTHAVQKMS-EAQLFIDETGGLNPMELRSRARRLARQ-CGKLGLIIIDYLQLMSGSSQGENRATEISEISRS 355 (460)
T ss_pred CCHHHHHHHHHHHHHHh-cCCEEEECCCCCCHHHHHHHHHHHHHh-CCCCCEEEEChhhhccCCCCCCcHHHHHHHHHHH
Confidence 2223332 222 2345553 33 3333322221111 125789999999987532 233445555555
Q ss_pred hcc
Q 010357 197 LGS 199 (512)
Q Consensus 197 ~~~ 199 (512)
++.
T Consensus 356 LK~ 358 (460)
T PRK07004 356 LKS 358 (460)
T ss_pred HHH
Confidence 544
No 430
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=92.31 E-value=0.23 Score=43.15 Aligned_cols=33 Identities=24% Similarity=0.411 Sum_probs=26.4
Q ss_pred CCcHHHHHHHHHhh-cCCCEEEEccCCChHhHHH
Q 010357 41 APTKVQAQAIPVIL-SGRHVLVNAATGTGKTVAY 73 (512)
Q Consensus 41 ~~~~~Q~~~~~~~~-~~~~~lv~~pTGsGKT~~~ 73 (512)
...+-|.+.+.... .+.++++.+|||||||...
T Consensus 9 ~~~~~~~~~l~~~v~~g~~i~I~G~tGSGKTTll 42 (186)
T cd01130 9 TFSPLQAAYLWLAVEARKNILISGGTGSGKTTLL 42 (186)
T ss_pred CCCHHHHHHHHHHHhCCCEEEEECCCCCCHHHHH
Confidence 46777888887654 6788999999999999664
No 431
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.29 E-value=1.3 Score=45.89 Aligned_cols=22 Identities=23% Similarity=0.188 Sum_probs=18.0
Q ss_pred EEEEccCCChHhHHHHHHHHHH
Q 010357 59 VLVNAATGTGKTVAYLAPIINH 80 (512)
Q Consensus 59 ~lv~~pTGsGKT~~~~~~~~~~ 80 (512)
.|++||.|+|||.++...+...
T Consensus 41 ~Lf~Gp~GvGKTtlAr~lAk~L 62 (618)
T PRK14951 41 YLFTGTRGVGKTTVSRILAKSL 62 (618)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5899999999998887765544
No 432
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=92.26 E-value=0.37 Score=43.76 Aligned_cols=23 Identities=30% Similarity=0.276 Sum_probs=18.1
Q ss_pred CCEEEEccCCChHhHHHHHHHHH
Q 010357 57 RHVLVNAATGTGKTVAYLAPIIN 79 (512)
Q Consensus 57 ~~~lv~~pTGsGKT~~~~~~~~~ 79 (512)
.++++.+|+|.|||..+.+.+.+
T Consensus 53 DHvLl~GPPGlGKTTLA~IIA~E 75 (332)
T COG2255 53 DHVLLFGPPGLGKTTLAHIIANE 75 (332)
T ss_pred CeEEeeCCCCCcHHHHHHHHHHH
Confidence 36899999999999776655544
No 433
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=92.21 E-value=0.29 Score=45.26 Aligned_cols=52 Identities=25% Similarity=0.297 Sum_probs=39.0
Q ss_pred cCCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHH
Q 010357 55 SGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKL 116 (512)
Q Consensus 55 ~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 116 (512)
.|+.+++.|++|||||...+..+.+.+.. +.++++++-. +...+..+.+..+
T Consensus 22 ~g~~~lI~G~pGsGKT~f~~qfl~~~~~~---------ge~vlyvs~~-e~~~~l~~~~~~~ 73 (260)
T COG0467 22 RGSVVLITGPPGTGKTIFALQFLYEGARE---------GEPVLYVSTE-ESPEELLENARSF 73 (260)
T ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHHHhc---------CCcEEEEEec-CCHHHHHHHHHHc
Confidence 56789999999999999988888887765 6778888754 4455555555543
No 434
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=92.21 E-value=0.71 Score=44.78 Aligned_cols=24 Identities=38% Similarity=0.304 Sum_probs=20.1
Q ss_pred hcCCCEEEEccCCChHhHHHHHHH
Q 010357 54 LSGRHVLVNAATGTGKTVAYLAPI 77 (512)
Q Consensus 54 ~~~~~~lv~~pTGsGKT~~~~~~~ 77 (512)
-.+.++++.++||+||++.+...-
T Consensus 99 p~~~~vLi~GetGtGKel~A~~iH 122 (403)
T COG1221 99 PSGLPVLIIGETGTGKELFARLIH 122 (403)
T ss_pred CCCCcEEEecCCCccHHHHHHHHH
Confidence 367899999999999998876544
No 435
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=92.18 E-value=1.9 Score=40.89 Aligned_cols=63 Identities=21% Similarity=0.186 Sum_probs=36.9
Q ss_pred cCCcccCCCCHHHHHHHHHhcCCCCCcHHHHHHHHHhhcCCCEEEEccCCChHhHHHHHHHHH
Q 010357 17 SCSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIIN 79 (512)
Q Consensus 17 ~~~~~~~~l~~~~~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~pTGsGKT~~~~~~~~~ 79 (512)
+-+|.+.|--+.+.+.+++..=+.--+|-.-.-...+..-+.+++.+|+|+|||.++-..+-+
T Consensus 88 ~v~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Ake 150 (386)
T KOG0737|consen 88 GVSFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKE 150 (386)
T ss_pred eeehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHH
Confidence 446777776677888886653222111111111111223467999999999999887665544
No 436
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=92.18 E-value=0.62 Score=40.56 Aligned_cols=24 Identities=29% Similarity=0.284 Sum_probs=18.8
Q ss_pred CEEEEccCCChHhHHHHHHHHHHH
Q 010357 58 HVLVNAATGTGKTVAYLAPIINHL 81 (512)
Q Consensus 58 ~~lv~~pTGsGKT~~~~~~~~~~~ 81 (512)
..++.||.|+|||..+...+...+
T Consensus 16 ~~L~~G~~G~gkt~~a~~~~~~l~ 39 (188)
T TIGR00678 16 AYLFAGPEGVGKELLALALAKALL 39 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHc
Confidence 478999999999988766655543
No 437
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=92.16 E-value=0.34 Score=44.76 Aligned_cols=30 Identities=30% Similarity=0.376 Sum_probs=23.5
Q ss_pred HHHHHhhcCCCEEEEccCCChHhHHHHHHH
Q 010357 48 QAIPVILSGRHVLVNAATGTGKTVAYLAPI 77 (512)
Q Consensus 48 ~~~~~~~~~~~~lv~~pTGsGKT~~~~~~~ 77 (512)
+++..+..++++++.||+|+|||..+...+
T Consensus 13 ~~l~~l~~g~~vLL~G~~GtGKT~lA~~la 42 (262)
T TIGR02640 13 RALRYLKSGYPVHLRGPAGTGKTTLAMHVA 42 (262)
T ss_pred HHHHHHhcCCeEEEEcCCCCCHHHHHHHHH
Confidence 344445578899999999999998876554
No 438
>PRK05595 replicative DNA helicase; Provisional
Probab=92.16 E-value=0.26 Score=49.47 Aligned_cols=49 Identities=18% Similarity=0.066 Sum_probs=30.3
Q ss_pred cCCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcHHHHHHHHHH
Q 010357 55 SGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEI 112 (512)
Q Consensus 55 ~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~ 112 (512)
.|.-+++.|.||.|||..++-.+.+.... .+.+++++..= .-..|+...
T Consensus 200 ~g~liviaarpg~GKT~~al~ia~~~a~~--------~g~~vl~fSlE-ms~~~l~~R 248 (444)
T PRK05595 200 KGDMILIAARPSMGKTTFALNIAEYAALR--------EGKSVAIFSLE-MSKEQLAYK 248 (444)
T ss_pred CCcEEEEEecCCCChHHHHHHHHHHHHHH--------cCCcEEEEecC-CCHHHHHHH
Confidence 45556789999999998877666553322 25557777542 233444444
No 439
>PRK05748 replicative DNA helicase; Provisional
Probab=92.01 E-value=1.1 Score=45.22 Aligned_cols=133 Identities=17% Similarity=0.107 Sum_probs=64.3
Q ss_pred hhcCCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHHhhcCCcceEEEeCCC
Q 010357 53 ILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGE 132 (512)
Q Consensus 53 ~~~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~g~ 132 (512)
+..|.-++|.|+||+|||..++-.+.+.... .+..+++++.- .-..|+...+-.... ......+..|.
T Consensus 200 ~~~G~livIaarpg~GKT~~al~ia~~~a~~--------~g~~v~~fSlE-ms~~~l~~R~l~~~~---~v~~~~i~~~~ 267 (448)
T PRK05748 200 LQPNDLIIVAARPSVGKTAFALNIAQNVATK--------TDKNVAIFSLE-MGAESLVMRMLCAEG---NIDAQRLRTGQ 267 (448)
T ss_pred CCCCceEEEEeCCCCCchHHHHHHHHHHHHh--------CCCeEEEEeCC-CCHHHHHHHHHHHhc---CCCHHHhhcCC
Confidence 3345567899999999998887777665432 24456666432 334444444422211 11111111222
Q ss_pred chHHHHHHH------cCCCCEEEe-CC----hHHHHHHhhcCCCcCCceeEEEEcchhHHHhc-----CchHHHHHHHHH
Q 010357 133 NRSKEKARL------RKGISILVA-TP----GRLLDHLKHTSSFLHTNLRWIIFDEADRILEL-----GFGKEIEEILDI 196 (512)
Q Consensus 133 ~~~~~~~~~------~~~~~Iiv~-Tp----~~l~~~l~~~~~~~~~~~~~lV~DEah~l~~~-----~~~~~~~~i~~~ 196 (512)
-....+..+ .....+.|. +| +.+...+...... ..++++||||=.|.+... +....+..+.+.
T Consensus 268 l~~~e~~~~~~a~~~l~~~~~~i~d~~~~ti~~i~~~~r~~~~~-~~~~~~vvIDyL~li~~~~~~~~~r~~~i~~i~~~ 346 (448)
T PRK05748 268 LTDDDWPKLTIAMGSLSDAPIYIDDTPGIKVTEIRARCRRLAQE-HGGLGLILIDYLQLIQGSGRSGENRQQEVSEISRS 346 (448)
T ss_pred CCHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHh-cCCCCEEEEccchhcCCCCCCCcCHHHHHHHHHHH
Confidence 222222211 122345543 33 3443333221111 125789999999987422 123345555555
Q ss_pred hc
Q 010357 197 LG 198 (512)
Q Consensus 197 ~~ 198 (512)
++
T Consensus 347 LK 348 (448)
T PRK05748 347 LK 348 (448)
T ss_pred HH
Confidence 53
No 440
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=91.98 E-value=2.9 Score=41.46 Aligned_cols=24 Identities=21% Similarity=0.145 Sum_probs=19.3
Q ss_pred CEEEEccCCChHhHHHHHHHHHHH
Q 010357 58 HVLVNAATGTGKTVAYLAPIINHL 81 (512)
Q Consensus 58 ~~lv~~pTGsGKT~~~~~~~~~~~ 81 (512)
-+++++++|+|||.++.-.+....
T Consensus 101 vi~~vG~~GsGKTTtaakLA~~l~ 124 (428)
T TIGR00959 101 VILMVGLQGSGKTTTCGKLAYYLK 124 (428)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHH
Confidence 367899999999999877776643
No 441
>PRK05636 replicative DNA helicase; Provisional
Probab=91.93 E-value=0.76 Score=46.65 Aligned_cols=27 Identities=26% Similarity=0.379 Sum_probs=19.7
Q ss_pred cCCCEEEEccCCChHhHHHHHHHHHHH
Q 010357 55 SGRHVLVNAATGTGKTVAYLAPIINHL 81 (512)
Q Consensus 55 ~~~~~lv~~pTGsGKT~~~~~~~~~~~ 81 (512)
.|.-+++.|.||+|||..++-.+....
T Consensus 264 ~G~Liiiaarpg~GKT~~al~~a~~~a 290 (505)
T PRK05636 264 GGQMIIVAARPGVGKSTLALDFMRSAS 290 (505)
T ss_pred CCceEEEEeCCCCCHHHHHHHHHHHHH
Confidence 344568899999999987776555543
No 442
>PHA00350 putative assembly protein
Probab=91.93 E-value=1.1 Score=43.54 Aligned_cols=25 Identities=20% Similarity=0.231 Sum_probs=18.8
Q ss_pred EEEEccCCChHhHHHHH-HHHHHHhh
Q 010357 59 VLVNAATGTGKTVAYLA-PIINHLQS 83 (512)
Q Consensus 59 ~lv~~pTGsGKT~~~~~-~~~~~~~~ 83 (512)
.++.|..|||||+.++. .++.++..
T Consensus 4 ~l~tG~pGSGKT~~aV~~~i~palk~ 29 (399)
T PHA00350 4 YAIVGRPGSYKSYEAVVYHIIPALKD 29 (399)
T ss_pred EEEecCCCCchhHHHHHHHHHHHHHC
Confidence 47899999999998875 45555544
No 443
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=91.86 E-value=0.39 Score=44.32 Aligned_cols=34 Identities=24% Similarity=0.324 Sum_probs=24.0
Q ss_pred CcHHHHHHHHHhhc--CCCEEEEccCCChHhHHHHH
Q 010357 42 PTKVQAQAIPVILS--GRHVLVNAATGTGKTVAYLA 75 (512)
Q Consensus 42 ~~~~Q~~~~~~~~~--~~~~lv~~pTGsGKT~~~~~ 75 (512)
+.+.|.+.+..++. +..+++.+|||||||.....
T Consensus 64 ~~~~~~~~l~~~~~~~~GlilisG~tGSGKTT~l~a 99 (264)
T cd01129 64 LKPENLEIFRKLLEKPHGIILVTGPTGSGKTTTLYS 99 (264)
T ss_pred CCHHHHHHHHHHHhcCCCEEEEECCCCCcHHHHHHH
Confidence 34667777765553 33588999999999976543
No 444
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=91.86 E-value=3.2 Score=36.27 Aligned_cols=35 Identities=23% Similarity=0.260 Sum_probs=27.8
Q ss_pred CCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEc
Q 010357 57 RHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLV 100 (512)
Q Consensus 57 ~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~ 100 (512)
.=+++-++-|+|||......+.-.+.+ +.++.+++
T Consensus 29 sL~lIEGd~~tGKSvLsqr~~YG~L~~---------g~~v~yvs 63 (235)
T COG2874 29 SLILIEGDNGTGKSVLSQRFAYGFLMN---------GYRVTYVS 63 (235)
T ss_pred eEEEEECCCCccHHHHHHHHHHHHHhC---------CceEEEEE
Confidence 347899999999999888877777655 66677775
No 445
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=91.82 E-value=1.5 Score=45.18 Aligned_cols=48 Identities=25% Similarity=0.410 Sum_probs=34.9
Q ss_pred EEEeCChHHHHHHhhcCCCcCCceeEEEEcchhHHHhcCchHHHHHHHHHhc
Q 010357 147 ILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILG 198 (512)
Q Consensus 147 Iiv~Tp~~l~~~l~~~~~~~~~~~~~lV~DEah~l~~~~~~~~~~~i~~~~~ 198 (512)
-+=+.|+++.+++++.+..+ -++.+||+|.+.....++--..++..+.
T Consensus 487 YVGAMPGkiIq~LK~v~t~N----PliLiDEvDKlG~g~qGDPasALLElLD 534 (906)
T KOG2004|consen 487 YVGAMPGKIIQCLKKVKTEN----PLILIDEVDKLGSGHQGDPASALLELLD 534 (906)
T ss_pred eeccCChHHHHHHHhhCCCC----ceEEeehhhhhCCCCCCChHHHHHHhcC
Confidence 45577999999998865543 4799999999875455666666665554
No 446
>PRK10865 protein disaggregation chaperone; Provisional
Probab=91.79 E-value=0.99 Score=49.27 Aligned_cols=24 Identities=17% Similarity=0.127 Sum_probs=19.2
Q ss_pred CCEEEEccCCChHhHHHHHHHHHH
Q 010357 57 RHVLVNAATGTGKTVAYLAPIINH 80 (512)
Q Consensus 57 ~~~lv~~pTGsGKT~~~~~~~~~~ 80 (512)
.+.++.||+|+|||..+-..+...
T Consensus 200 ~n~lL~G~pGvGKT~l~~~la~~i 223 (857)
T PRK10865 200 NNPVLIGEPGVGKTAIVEGLAQRI 223 (857)
T ss_pred CceEEECCCCCCHHHHHHHHHHHh
Confidence 589999999999998876555443
No 447
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.77 E-value=2.8 Score=42.44 Aligned_cols=21 Identities=24% Similarity=0.162 Sum_probs=16.8
Q ss_pred EEEEccCCChHhHHHHHHHHH
Q 010357 59 VLVNAATGTGKTVAYLAPIIN 79 (512)
Q Consensus 59 ~lv~~pTGsGKT~~~~~~~~~ 79 (512)
.++.||.|+|||.++.+.+..
T Consensus 41 yLf~Gp~G~GKTtlAr~lAk~ 61 (486)
T PRK14953 41 YIFAGPRGTGKTTIARILAKV 61 (486)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 578999999999887666544
No 448
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=91.72 E-value=0.3 Score=44.06 Aligned_cols=53 Identities=26% Similarity=0.313 Sum_probs=35.3
Q ss_pred cCCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHH
Q 010357 55 SGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKL 116 (512)
Q Consensus 55 ~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 116 (512)
.|..+++.||+|+|||..++..+.+.+.+ .+.++++++-. +-..++.+.+..+
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~~~~~~--------~ge~vlyvs~e-e~~~~l~~~~~s~ 70 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLYNGLKN--------FGEKVLYVSFE-EPPEELIENMKSF 70 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHH--------HT--EEEEESS-S-HHHHHHHHHTT
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHhhhh--------cCCcEEEEEec-CCHHHHHHHHHHc
Confidence 45678999999999999988888777654 14558888744 3344555555543
No 449
>PF01935 DUF87: Domain of unknown function DUF87; InterPro: IPR002789 The function of this domain is unknown. It contains several conserved aspartates and histidines that could be metal ligands.
Probab=91.66 E-value=0.26 Score=44.53 Aligned_cols=43 Identities=23% Similarity=0.414 Sum_probs=32.2
Q ss_pred CCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcHHHH
Q 010357 56 GRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELC 106 (512)
Q Consensus 56 ~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~ 106 (512)
++++.|.|.||||||......+.+.+.. .+..++++=|.-+-.
T Consensus 23 ~~H~~I~G~TGsGKS~~~~~ll~~l~~~--------~~~~~ii~D~~GEY~ 65 (229)
T PF01935_consen 23 NRHIAIFGTTGSGKSNTVKVLLEELLKK--------KGAKVIIFDPHGEYA 65 (229)
T ss_pred cceEEEECCCCCCHHHHHHHHHHHHHhc--------CCCCEEEEcCCCcch
Confidence 3589999999999999887777666532 255688887876543
No 450
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=91.60 E-value=3 Score=35.56 Aligned_cols=48 Identities=13% Similarity=0.082 Sum_probs=32.5
Q ss_pred CEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHH
Q 010357 58 HVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLL 117 (512)
Q Consensus 58 ~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 117 (512)
.+++.|++|||||..+...+... +..+++++.....-.++.+.+....
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~------------~~~~~~iat~~~~~~e~~~ri~~h~ 50 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQS------------GLQVLYIATAQPFDDEMAARIAHHR 50 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHc------------CCCcEeCcCCCCChHHHHHHHHHHH
Confidence 57899999999998776554331 2346777776666666666665543
No 451
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=91.59 E-value=0.4 Score=43.12 Aligned_cols=52 Identities=21% Similarity=0.220 Sum_probs=37.0
Q ss_pred cCCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHH
Q 010357 55 SGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKL 116 (512)
Q Consensus 55 ~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 116 (512)
.|..+++.+++|+|||..++..+.+.+.+ +.+++|++... -..+..+.+..+
T Consensus 15 ~g~~~li~G~~G~GKt~~~~~~~~~~~~~---------g~~~~y~s~e~-~~~~l~~~~~~~ 66 (224)
T TIGR03880 15 EGHVIVVIGEYGTGKTTFSLQFLYQGLKN---------GEKAMYISLEE-REERILGYAKSK 66 (224)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhC---------CCeEEEEECCC-CHHHHHHHHHHc
Confidence 45678999999999998887777776654 66788876653 355555555443
No 452
>PF14516 AAA_35: AAA-like domain
Probab=91.55 E-value=0.96 Score=43.38 Aligned_cols=40 Identities=23% Similarity=0.316 Sum_probs=30.7
Q ss_pred CcH-HHHHHHHHhhc-CCCEEEEccCCChHhHHHHHHHHHHHh
Q 010357 42 PTK-VQAQAIPVILS-GRHVLVNAATGTGKTVAYLAPIINHLQ 82 (512)
Q Consensus 42 ~~~-~Q~~~~~~~~~-~~~~lv~~pTGsGKT~~~~~~~~~~~~ 82 (512)
.|+ ..++++..+.+ |..+.|.||=.+|||-..... .+.+.
T Consensus 15 ~R~~~e~~~~~~i~~~G~~~~I~apRq~GKTSll~~l-~~~l~ 56 (331)
T PF14516_consen 15 ERPPAEQECYQEIVQPGSYIRIKAPRQMGKTSLLLRL-LERLQ 56 (331)
T ss_pred CchHHHHHHHHHHhcCCCEEEEECcccCCHHHHHHHH-HHHHH
Confidence 344 88999999887 889999999999999664443 34443
No 453
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=91.55 E-value=0.24 Score=47.35 Aligned_cols=40 Identities=18% Similarity=0.110 Sum_probs=29.6
Q ss_pred CCcHHHHHHHHHhh----cCC---CEEEEccCCChHhHHHHHHHHHH
Q 010357 41 APTKVQAQAIPVIL----SGR---HVLVNAATGTGKTVAYLAPIINH 80 (512)
Q Consensus 41 ~~~~~Q~~~~~~~~----~~~---~~lv~~pTGsGKT~~~~~~~~~~ 80 (512)
.++|||+..+..+. +++ -.++.||.|+||+..+...+...
T Consensus 2 ~~yPWl~~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~L 48 (334)
T PRK07993 2 KWYPWLRPDYEQLVGSYQAGRGHHALLIQALPGMGDDALIYALSRWL 48 (334)
T ss_pred CCCCCChHHHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHHHHHH
Confidence 36789998887765 332 46899999999998876665444
No 454
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=91.50 E-value=1.1 Score=48.85 Aligned_cols=21 Identities=33% Similarity=0.303 Sum_probs=17.2
Q ss_pred EEEEccCCChHhHHHHHHHHH
Q 010357 59 VLVNAATGTGKTVAYLAPIIN 79 (512)
Q Consensus 59 ~lv~~pTGsGKT~~~~~~~~~ 79 (512)
+++.||||+|||..+-..+..
T Consensus 599 ~lf~Gp~GvGKT~lA~~La~~ 619 (852)
T TIGR03345 599 FLLVGPSGVGKTETALALAEL 619 (852)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 799999999999887655444
No 455
>PF03237 Terminase_6: Terminase-like family; InterPro: IPR004921 The terminase is a component of the molecular motor that translocates genomic DNA into empty capsids during DNA packaging []. The large subunit heterodimerises with the small terminase protein, which is docked on the capsid portal protein. The latter forms a ring through which genomic DNA is translocated into the capsid. The terminase protein may have or induce an endonuclease activity to cleave DNA after encapsidation. This entry represents a family of terminase large subunits found in a variety of the Caudovirales and prophage regions of bacterial genomes. Homologues are also found in Gene Transfer Agents (GTA) [], including ORFg2 (RCAP_rcc01683) of the GTA of Rhodobacter capsulatus (Rhodopseudomonas capsulata) [see Fig.1, in ].; PDB: 2O0K_A 3CPE_A 2O0J_A 2O0H_A 3C6H_A 3C6A_A.
Probab=91.48 E-value=1.9 Score=42.12 Aligned_cols=42 Identities=21% Similarity=0.276 Sum_probs=24.1
Q ss_pred EEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcHHHHHH
Q 010357 60 LVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQ 108 (512)
Q Consensus 60 lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q 108 (512)
++.++.|+|||.+....++.......+ ...++++ |+..-+.+
T Consensus 1 ~i~~~r~~GKT~~~~~~~~~~~~~~~~------~~~vi~~-~~~~~~~~ 42 (384)
T PF03237_consen 1 LINGGRGSGKTTLIAIWFLWWALTRPP------GRRVIIA-STYRQARD 42 (384)
T ss_dssp -EEE-SSS-HHHHHHHHHHHHHHSSSS--------EEEEE-ESSHHHHH
T ss_pred CCcCCccccHHHHHHHHHHHHHhhCCC------CcEEEEe-cCHHHHHH
Confidence 478899999999988777766655221 2345555 65544443
No 456
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=91.44 E-value=1.2 Score=43.12 Aligned_cols=40 Identities=28% Similarity=0.401 Sum_probs=26.1
Q ss_pred cHHHHHHHHHhh---cCCCEEEEccCCChHhHHHHHHHHHHHhh
Q 010357 43 TKVQAQAIPVIL---SGRHVLVNAATGTGKTVAYLAPIINHLQS 83 (512)
Q Consensus 43 ~~~Q~~~~~~~~---~~~~~lv~~pTGsGKT~~~~~~~~~~~~~ 83 (512)
.+.=.++++.+. .|+..++.||.|+|||..+-. +.+.+..
T Consensus 153 ~~~~~rvID~l~PIGkGQR~lIvgppGvGKTTLaK~-Ian~I~~ 195 (416)
T PRK09376 153 EDLSTRIIDLIAPIGKGQRGLIVAPPKAGKTVLLQN-IANSITT 195 (416)
T ss_pred cccceeeeeeecccccCceEEEeCCCCCChhHHHHH-HHHHHHh
Confidence 344445555443 688999999999999965433 4444443
No 457
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=91.40 E-value=0.24 Score=44.91 Aligned_cols=18 Identities=22% Similarity=0.425 Sum_probs=13.9
Q ss_pred EEEEccCCChHhHHHHHH
Q 010357 59 VLVNAATGTGKTVAYLAP 76 (512)
Q Consensus 59 ~lv~~pTGsGKT~~~~~~ 76 (512)
++|.|+.|||||....-.
T Consensus 1 ~vv~G~pGsGKSt~i~~~ 18 (234)
T PF01443_consen 1 IVVHGVPGSGKSTLIKKL 18 (234)
T ss_pred CEEEcCCCCCHHHHHHHH
Confidence 478999999999764433
No 458
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=91.38 E-value=1.4 Score=42.83 Aligned_cols=26 Identities=31% Similarity=0.400 Sum_probs=19.7
Q ss_pred cCCCEEEEccCCChHhHHHHHHHHHHH
Q 010357 55 SGRHVLVNAATGTGKTVAYLAPIINHL 81 (512)
Q Consensus 55 ~~~~~lv~~pTGsGKT~~~~~~~~~~~ 81 (512)
.|+.+++.||+|+|||..+.. +...+
T Consensus 167 ~Gq~~~IvG~~g~GKTtL~~~-i~~~I 192 (415)
T TIGR00767 167 KGQRGLIVAPPKAGKTVLLQK-IAQAI 192 (415)
T ss_pred CCCEEEEECCCCCChhHHHHH-HHHhh
Confidence 678899999999999975444 44443
No 459
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=91.35 E-value=0.53 Score=45.59 Aligned_cols=26 Identities=27% Similarity=0.362 Sum_probs=18.4
Q ss_pred cCCCEEEEccCCChHhHHHHHHHHHHH
Q 010357 55 SGRHVLVNAATGTGKTVAYLAPIINHL 81 (512)
Q Consensus 55 ~~~~~lv~~pTGsGKT~~~~~~~~~~~ 81 (512)
.+..++++||||||||..... ++..+
T Consensus 148 ~~GlilI~G~TGSGKTT~l~a-l~~~i 173 (372)
T TIGR02525 148 AAGLGLICGETGSGKSTLAAS-IYQHC 173 (372)
T ss_pred cCCEEEEECCCCCCHHHHHHH-HHHHH
Confidence 344789999999999976533 44444
No 460
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=91.33 E-value=0.31 Score=43.29 Aligned_cols=39 Identities=18% Similarity=0.271 Sum_probs=29.9
Q ss_pred cCCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCc
Q 010357 55 SGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPT 102 (512)
Q Consensus 55 ~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt 102 (512)
.|+-+.+.||+|+|||..++..+.+.... +.+++|+.-.
T Consensus 11 ~g~i~~i~G~~GsGKT~l~~~~~~~~~~~---------g~~v~yi~~e 49 (209)
T TIGR02237 11 RGTITQIYGPPGSGKTNICMILAVNAARQ---------GKKVVYIDTE 49 (209)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhC---------CCeEEEEECC
Confidence 45667899999999999988777776543 5668887664
No 461
>PRK09165 replicative DNA helicase; Provisional
Probab=91.27 E-value=0.73 Score=46.84 Aligned_cols=122 Identities=11% Similarity=0.125 Sum_probs=58.7
Q ss_pred cCCCEEEEccCCChHhHHHHHHHHHHHhhcCCC------CCCCCCceEEEEcCcHHHHHHHHHHHHHHHhhcCCcceEEE
Q 010357 55 SGRHVLVNAATGTGKTVAYLAPIINHLQSYSPR------IDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYV 128 (512)
Q Consensus 55 ~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~------~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~ 128 (512)
.|.-+++.|+||+|||..++-.+.+.......+ .....+..++|++.- .-..|+...+-....... ...+
T Consensus 216 ~g~livIaarpg~GKT~~al~ia~~~a~~~~~~~~~~~~~~~~~g~~vl~fSlE-Ms~~ql~~R~la~~s~v~---~~~i 291 (497)
T PRK09165 216 PSDLIILAGRPSMGKTALATNIAFNAAKAYRREAQPDGSKKAVNGGVVGFFSLE-MSAEQLATRILSEQSEIS---SSKI 291 (497)
T ss_pred CCceEEEEeCCCCChHHHHHHHHHHHHHhhcccccccccccccCCCeEEEEeCc-CCHHHHHHHHHHHhcCCC---HHHH
Confidence 344578899999999988777666554332110 001125567776432 334455544433321111 1111
Q ss_pred eCCCchHHHHHHHc------CCCCEEEe-----CChHHHHHHhhcCCCcCCceeEEEEcchhHHH
Q 010357 129 MGGENRSKEKARLR------KGISILVA-----TPGRLLDHLKHTSSFLHTNLRWIIFDEADRIL 182 (512)
Q Consensus 129 ~~g~~~~~~~~~~~------~~~~Iiv~-----Tp~~l~~~l~~~~~~~~~~~~~lV~DEah~l~ 182 (512)
..|.-....+..+. ...++.|- |++.+...+..... -..+++||||=.|.+.
T Consensus 292 ~~~~l~~~e~~~l~~a~~~l~~~~l~I~d~~~~ti~~i~~~ir~l~~--~~~~~lvvIDyLqli~ 354 (497)
T PRK09165 292 RRGKISEEDFEKLVDASQELQKLPLYIDDTPALSISQLRARARRLKR--QHGLDLLVVDYLQLIR 354 (497)
T ss_pred hcCCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCCHHHHHHHHHHHHH--hcCCCEEEEcchHhcc
Confidence 22222222222211 12345543 23344333332111 1257899999999775
No 462
>PRK13695 putative NTPase; Provisional
Probab=91.23 E-value=1.3 Score=37.98 Aligned_cols=20 Identities=25% Similarity=0.345 Sum_probs=16.0
Q ss_pred CEEEEccCCChHhHHHHHHH
Q 010357 58 HVLVNAATGTGKTVAYLAPI 77 (512)
Q Consensus 58 ~~lv~~pTGsGKT~~~~~~~ 77 (512)
++++.++.|+|||..+...+
T Consensus 2 ~i~ltG~~G~GKTTll~~i~ 21 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIA 21 (174)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 47899999999998766543
No 463
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=91.11 E-value=0.17 Score=48.54 Aligned_cols=22 Identities=32% Similarity=0.366 Sum_probs=17.9
Q ss_pred CCCEEEEccCCChHhHHHHHHH
Q 010357 56 GRHVLVNAATGTGKTVAYLAPI 77 (512)
Q Consensus 56 ~~~~lv~~pTGsGKT~~~~~~~ 77 (512)
..|+|+.+|||||||+.+--.+
T Consensus 226 KSNvLllGPtGsGKTllaqTLA 247 (564)
T KOG0745|consen 226 KSNVLLLGPTGSGKTLLAQTLA 247 (564)
T ss_pred cccEEEECCCCCchhHHHHHHH
Confidence 3589999999999998875443
No 464
>KOG1807 consensus Helicases [Replication, recombination and repair]
Probab=90.97 E-value=0.43 Score=49.13 Aligned_cols=71 Identities=23% Similarity=0.087 Sum_probs=54.7
Q ss_pred CcHHHHHHHHHhhcCCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHH
Q 010357 42 PTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHK 115 (512)
Q Consensus 42 ~~~~Q~~~~~~~~~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~ 115 (512)
+-.-|+.|+...+..+-.++++|+|+|||++-+..+-..+..... ......++++|-|...+.|.-..+..
T Consensus 379 ldsSq~~A~qs~ltyelsliqgppGTgkt~vtlkav~tLL~n~s~---~~~~epIlvvC~Tnhavdq~ligiy~ 449 (1025)
T KOG1807|consen 379 LDSSQQFAKQSKLTYELSLIQGPPGTGKTLVTLKAVDTLLLNSSG---YTEPEPILVVCLTNHAVDQYLIGIYY 449 (1025)
T ss_pred ecHHHHHHHHHHhhhhhheeecCCCCCceeehHHHHHHHHhcccc---cccccceeeeehhhHHHHHHHHHHHh
Confidence 344599999998888889999999999999988877777665432 13355689999998888887665543
No 465
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=90.93 E-value=0.96 Score=46.37 Aligned_cols=83 Identities=16% Similarity=0.254 Sum_probs=69.0
Q ss_pred ccCceEEEEeecchhhhhHHHhhhhhcCCCCCCChhHHHhhhhccceeeecCCCCHHHHHHHHHhhhcCCCcEEEeecc-
Q 010357 317 EVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDV- 395 (512)
Q Consensus 317 ~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~l~g~~~~~~r~~~~~~f~~~~~~vLvaT~~- 395 (512)
..+..+.+-+||---|+..+.-+.+.... .++.+..+.|++....|.+++....+|+++++|.|-+
T Consensus 309 ~~G~Q~ALMAPTEILA~QH~~~~~~~l~~-------------~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHAL 375 (677)
T COG1200 309 EAGYQAALMAPTEILAEQHYESLRKWLEP-------------LGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHAL 375 (677)
T ss_pred HcCCeeEEeccHHHHHHHHHHHHHHHhhh-------------cCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchh
Confidence 45679999999988777777777665321 1788999999999999999999999999999999976
Q ss_pred cccCCCCCCCcEEEEeC
Q 010357 396 AARGLDFPKVKCIIQYD 412 (512)
Q Consensus 396 ~~~Gldip~~~~VI~~~ 412 (512)
+...+++.+..+||.-.
T Consensus 376 iQd~V~F~~LgLVIiDE 392 (677)
T COG1200 376 IQDKVEFHNLGLVIIDE 392 (677)
T ss_pred hhcceeecceeEEEEec
Confidence 57899999988888643
No 466
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=90.81 E-value=1.5 Score=46.26 Aligned_cols=22 Identities=27% Similarity=0.158 Sum_probs=17.7
Q ss_pred EEEEccCCChHhHHHHHHHHHH
Q 010357 59 VLVNAATGTGKTVAYLAPIINH 80 (512)
Q Consensus 59 ~lv~~pTGsGKT~~~~~~~~~~ 80 (512)
.|+.||.|+|||.++...+...
T Consensus 43 YLF~GP~GtGKTt~AriLAk~L 64 (725)
T PRK07133 43 YLFSGPRGTGKTSVAKIFANAL 64 (725)
T ss_pred EEEECCCCCcHHHHHHHHHHHh
Confidence 5899999999998886665443
No 467
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=90.81 E-value=3.2 Score=37.67 Aligned_cols=60 Identities=15% Similarity=0.092 Sum_probs=34.1
Q ss_pred CEEEEccCCChHhHHHHHHHHHHHhhcCCC---CCCCCCceEEEEcCcHHHHHHHHHHHHHHHh
Q 010357 58 HVLVNAATGTGKTVAYLAPIINHLQSYSPR---IDRSSGTFALVLVPTRELCLQVYEILHKLLH 118 (512)
Q Consensus 58 ~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~---~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~ 118 (512)
-.++.||.|+|||..++..++....-..-- .....+.+++|+.---. ..++.+.+..+..
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~va~G~~~~g~~~~~~~~~~Vlyi~~Ed~-~~~i~~Rl~~i~~ 65 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALAMALGKNLFGGGLKVTEPGRVVYLSAEDP-REEIHRRLEAILQ 65 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHHHhcCccccCCccccCCCceEEEEECCCC-HHHHHHHHHHHHh
Confidence 358999999999999887776543221100 11124667888872211 2234444555544
No 468
>TIGR03743 SXT_TraD conjugative coupling factor TraD, SXT/TOL subfamily. Members of this protein family are the putative conjugative coupling factor, TraD (or TraG), rather distantly related to the well-characterized TraD of the F plasmid. Members are associated with conjugative-transposon-like mobile genetic elements of the class that includes SXT, an antibiotic resistance transfer element in some Vibrio cholerae strains.
Probab=90.72 E-value=0.56 Score=49.02 Aligned_cols=51 Identities=25% Similarity=0.326 Sum_probs=36.9
Q ss_pred CCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcHH--HHHHHHHHHHHH
Q 010357 57 RHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRE--LCLQVYEILHKL 116 (512)
Q Consensus 57 ~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~--L~~q~~~~~~~~ 116 (512)
.++++.|+||+|||..+...+.+.+.. +..++++=|-.. |.......++..
T Consensus 177 ~H~lv~G~TGsGKT~l~~~l~~q~i~~---------g~~viv~DpKgD~~l~~~~~~~~~~~ 229 (634)
T TIGR03743 177 GHTLVLGTTGVGKTRLAELLITQDIRR---------GDVVIVIDPKGDADLKRRMRAEAKRA 229 (634)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHc---------CCeEEEEeCCCchHHHHHHHHHHHHh
Confidence 678999999999998887777776654 555777777754 555555555554
No 469
>PRK10689 transcription-repair coupling factor; Provisional
Probab=90.67 E-value=1.3 Score=49.85 Aligned_cols=81 Identities=11% Similarity=0.088 Sum_probs=64.7
Q ss_pred cCceEEEEeecchhhhhHHHhhhhhcCCCCCCChhHHHhhhhccceeeecCCCCHHHHHHHHHhhhcCCCcEEEeecc-c
Q 010357 318 VSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDV-A 396 (512)
Q Consensus 318 ~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~l~g~~~~~~r~~~~~~f~~~~~~vLvaT~~-~ 396 (512)
.+.+++|.+|++..+..+++.+++..... +..+..++|..+..++..+++.+.+|..+|+|+|.. +
T Consensus 648 ~g~qvlvLvPT~eLA~Q~~~~f~~~~~~~-------------~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL 714 (1147)
T PRK10689 648 NHKQVAVLVPTTLLAQQHYDNFRDRFANW-------------PVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLL 714 (1147)
T ss_pred cCCeEEEEeCcHHHHHHHHHHHHHhhccC-------------CceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHH
Confidence 46799999999999999998887642110 456788899999999999999999999999999964 4
Q ss_pred ccCCCCCCCcEEEEe
Q 010357 397 ARGLDFPKVKCIIQY 411 (512)
Q Consensus 397 ~~Gldip~~~~VI~~ 411 (512)
...+++.++.++|.-
T Consensus 715 ~~~v~~~~L~lLVID 729 (1147)
T PRK10689 715 QSDVKWKDLGLLIVD 729 (1147)
T ss_pred hCCCCHhhCCEEEEe
Confidence 445667778887743
No 470
>PRK10436 hypothetical protein; Provisional
Probab=90.63 E-value=0.54 Score=47.01 Aligned_cols=38 Identities=32% Similarity=0.419 Sum_probs=24.5
Q ss_pred cHHHHHHHHHhh--cCCCEEEEccCCChHhHHHHHHHHHHH
Q 010357 43 TKVQAQAIPVIL--SGRHVLVNAATGTGKTVAYLAPIINHL 81 (512)
Q Consensus 43 ~~~Q~~~~~~~~--~~~~~lv~~pTGsGKT~~~~~~~~~~~ 81 (512)
.+-|.+.+..+. .+.-++++||||||||.+... ++..+
T Consensus 203 ~~~~~~~l~~~~~~~~GliLvtGpTGSGKTTtL~a-~l~~~ 242 (462)
T PRK10436 203 TPAQLAQFRQALQQPQGLILVTGPTGSGKTVTLYS-ALQTL 242 (462)
T ss_pred CHHHHHHHHHHHHhcCCeEEEECCCCCChHHHHHH-HHHhh
Confidence 355556665544 334688999999999977533 33443
No 471
>PF10412 TrwB_AAD_bind: Type IV secretion-system coupling protein DNA-binding domain; InterPro: IPR019476 The plasmid conjugative coupling protein TraD (also known as TrwB) is a basic integral inner-membrane nucleoside-triphosphate-binding protein. It is the structural prototype for the type IV secretion system coupling proteins, a family of proteins essential for macromolecular transport between cells []. This protein forms hexamers from six structurally very similar protomers []. This hexamer contains a central channel running from the cytosolic pole (formed by the all-alpha domains) to the membrane pole ending at the transmembrane pore shaped by 12 transmembrane helices, rendering an overall mushroom-like structure. The TrwB all-alpha domain appears to be the DNA-binding domain of the structure. ; PDB: 1E9S_D 1E9R_F 1GKI_B 1GL7_G 1GL6_A.
Probab=90.47 E-value=0.36 Score=47.37 Aligned_cols=47 Identities=30% Similarity=0.529 Sum_probs=29.1
Q ss_pred hcCCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcHHHHHHH
Q 010357 54 LSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQV 109 (512)
Q Consensus 54 ~~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~ 109 (512)
...+++++.|.||||||.+. ..++..+.. .+.+++|.=|.-+.....
T Consensus 13 ~e~~~~li~G~~GsGKT~~i-~~ll~~~~~--------~g~~~iI~D~kg~~~~~f 59 (386)
T PF10412_consen 13 SENRHILIIGATGSGKTQAI-RHLLDQIRA--------RGDRAIIYDPKGEFTERF 59 (386)
T ss_dssp GGGG-EEEEE-TTSSHHHHH-HHHHHHHHH--------TT-EEEEEEETTHHHHHH
T ss_pred hhhCcEEEECCCCCCHHHHH-HHHHHHHHH--------cCCEEEEEECCchHHHHh
Confidence 45678999999999999754 455555444 155577777776654433
No 472
>COG3598 RepA RecA-family ATPase [DNA replication, recombination, and repair]
Probab=90.43 E-value=2.9 Score=38.86 Aligned_cols=75 Identities=17% Similarity=0.085 Sum_probs=40.4
Q ss_pred HHHHHHHhh-cCCCEEEEccCCChHhHHHHHHHHHHHhh-cCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHHhhcC
Q 010357 46 QAQAIPVIL-SGRHVLVNAATGTGKTVAYLAPIINHLQS-YSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFH 121 (512)
Q Consensus 46 Q~~~~~~~~-~~~~~lv~~pTGsGKT~~~~~~~~~~~~~-~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~ 121 (512)
|-+.++..+ ++-.+++.|+.|.|||+..+...+....- ..-...-...++++|+.--- --+.+...++.....++
T Consensus 78 ~P~lId~~fr~g~~~~~~gdsg~GKttllL~l~IalaaG~~lfG~~v~epGkvlyvslEl-~re~~L~Rl~~v~a~mg 154 (402)
T COG3598 78 SPQLIDEFFRKGYVSILYGDSGVGKTTLLLYLCIALAAGKNLFGNKVKEPGKVLYVSLEL-YREDILERLEPVRARMG 154 (402)
T ss_pred ChhhhhHHhhcCeeEEEecCCcccHhHHHHHHHHHHHhhHHHhcccccCCCeEEEEEecc-ChHHHHHHHHHHHHHcC
Confidence 555555544 55567888999999999876554433221 11111123456678774321 12234455555555444
No 473
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=90.43 E-value=1.3 Score=45.29 Aligned_cols=29 Identities=21% Similarity=0.441 Sum_probs=22.8
Q ss_pred CceeEEEEcchhHHHhcCchHHHHHHHHH
Q 010357 168 TNLRWIIFDEADRILELGFGKEIEEILDI 196 (512)
Q Consensus 168 ~~~~~lV~DEah~l~~~~~~~~~~~i~~~ 196 (512)
.+.+++|+|||=.-++.+....+..++..
T Consensus 532 ~kP~~v~LDEATsALDe~~e~~l~q~l~~ 560 (604)
T COG4178 532 HKPKWVFLDEATSALDEETEDRLYQLLKE 560 (604)
T ss_pred cCCCEEEEecchhccChHHHHHHHHHHHh
Confidence 46789999999988887777776666654
No 474
>PHA02542 41 41 helicase; Provisional
Probab=90.33 E-value=1.2 Score=44.93 Aligned_cols=36 Identities=19% Similarity=0.197 Sum_probs=26.2
Q ss_pred CCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEc
Q 010357 56 GRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLV 100 (512)
Q Consensus 56 ~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~ 100 (512)
|.-+++.|++|.|||..++-.+.+.... +..++++.
T Consensus 190 G~LiiIaarPgmGKTtfalniA~~~a~~---------g~~Vl~fS 225 (473)
T PHA02542 190 KTLNVLLAGVNVGKSLGLCSLAADYLQQ---------GYNVLYIS 225 (473)
T ss_pred CcEEEEEcCCCccHHHHHHHHHHHHHhc---------CCcEEEEe
Confidence 3446889999999998888777666533 55577664
No 475
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=90.32 E-value=1.5 Score=39.91 Aligned_cols=21 Identities=33% Similarity=0.373 Sum_probs=17.4
Q ss_pred hhcCCCEEEEccCCChHhHHH
Q 010357 53 ILSGRHVLVNAATGTGKTVAY 73 (512)
Q Consensus 53 ~~~~~~~lv~~pTGsGKT~~~ 73 (512)
+-.|+.+++.+|.|+|||..+
T Consensus 13 i~~Gqr~~I~G~~G~GKTTLl 33 (249)
T cd01128 13 IGKGQRGLIVAPPKAGKTTLL 33 (249)
T ss_pred cCCCCEEEEECCCCCCHHHHH
Confidence 347889999999999999543
No 476
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=90.30 E-value=1.9 Score=44.93 Aligned_cols=21 Identities=24% Similarity=0.390 Sum_probs=16.5
Q ss_pred CCEEEEccCCChHhHHHHHHH
Q 010357 57 RHVLVNAATGTGKTVAYLAPI 77 (512)
Q Consensus 57 ~~~lv~~pTGsGKT~~~~~~~ 77 (512)
+-+++.||+|+|||.++-+.+
T Consensus 111 ~illL~GP~GsGKTTl~~~la 131 (637)
T TIGR00602 111 RILLITGPSGCGKSTTIKILS 131 (637)
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 348999999999998765544
No 477
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=90.28 E-value=0.43 Score=42.71 Aligned_cols=37 Identities=22% Similarity=0.218 Sum_probs=28.6
Q ss_pred cCCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEc
Q 010357 55 SGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLV 100 (512)
Q Consensus 55 ~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~ 100 (512)
.|+-+++.|++|+|||..++..+.+.... +.+++++.
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~~a~~~~~~---------g~~v~yi~ 54 (218)
T cd01394 18 RGTVTQVYGPPGTGKTNIAIQLAVETAGQ---------GKKVAYID 54 (218)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhc---------CCeEEEEE
Confidence 34567899999999999988887776533 66688873
No 478
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=90.27 E-value=0.29 Score=42.70 Aligned_cols=20 Identities=40% Similarity=0.629 Sum_probs=14.6
Q ss_pred hcCCCEEEEccCCChHhHHH
Q 010357 54 LSGRHVLVNAATGTGKTVAY 73 (512)
Q Consensus 54 ~~~~~~lv~~pTGsGKT~~~ 73 (512)
..++++++.+|.|+|||+.+
T Consensus 20 aG~h~lLl~GppGtGKTmlA 39 (206)
T PF01078_consen 20 AGGHHLLLIGPPGTGKTMLA 39 (206)
T ss_dssp HCC--EEEES-CCCTHHHHH
T ss_pred cCCCCeEEECCCCCCHHHHH
Confidence 36789999999999999775
No 479
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=90.18 E-value=1.1 Score=35.65 Aligned_cols=60 Identities=17% Similarity=0.079 Sum_probs=34.0
Q ss_pred CCEE--EEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHH
Q 010357 57 RHVL--VNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLL 117 (512)
Q Consensus 57 ~~~l--v~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 117 (512)
+.++ +.|+||+|||+++-+.+...+.. .-+...-..-....=.|...-+.+....++.+.
T Consensus 52 KpLVlSfHG~tGtGKn~v~~liA~~ly~~-G~~S~~V~~f~~~~hFP~~~~v~~Yk~~L~~~I 113 (127)
T PF06309_consen 52 KPLVLSFHGWTGTGKNFVSRLIAEHLYKS-GMKSPFVHQFIATHHFPHNSNVDEYKEQLKSWI 113 (127)
T ss_pred CCEEEEeecCCCCcHHHHHHHHHHHHHhc-ccCCCceeeecccccCCCchHHHHHHHHHHHHH
Confidence 4444 79999999999988877665543 111100001112233456566666666666654
No 480
>PRK10263 DNA translocase FtsK; Provisional
Probab=90.16 E-value=1.8 Score=48.12 Aligned_cols=29 Identities=38% Similarity=0.502 Sum_probs=23.0
Q ss_pred CCEEEEccCCChHhHHHHHHHHHHHhhcC
Q 010357 57 RHVLVNAATGTGKTVAYLAPIINHLQSYS 85 (512)
Q Consensus 57 ~~~lv~~pTGsGKT~~~~~~~~~~~~~~~ 85 (512)
-++||.|.||||||.+.-..++..+....
T Consensus 1011 PHLLIAGaTGSGKSv~LntLIlSLl~~~s 1039 (1355)
T PRK10263 1011 PHLLVAGTTGSGKSVGVNAMILSMLYKAQ 1039 (1355)
T ss_pred CcEEEecCCCCCHHHHHHHHHHHHHHhCC
Confidence 58899999999999997777766665533
No 481
>PF02456 Adeno_IVa2: Adenovirus IVa2 protein; InterPro: IPR003389 Va2 protein can interact with the adenoviral packaging signal and this interaction involves DNA sequences that have previously been demonstrated to be required for packaging []. During the course of lytic infection, the adenovirus major late promoter (MLP) is induced to high levels after replication of viral DNA has started. IVa2 is a transcriptional activator of the major late promoter [].; GO: 0019083 viral transcription
Probab=90.14 E-value=0.29 Score=44.84 Aligned_cols=39 Identities=21% Similarity=0.296 Sum_probs=24.0
Q ss_pred EEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcHH
Q 010357 59 VLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRE 104 (512)
Q Consensus 59 ~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~ 104 (512)
.+|-||||+||+-..--.+-..+.+ .....++||+|.+.
T Consensus 90 ~~VYGPTG~GKSqLlRNLis~~lI~-------P~PETVfFItP~~~ 128 (369)
T PF02456_consen 90 GVVYGPTGSGKSQLLRNLISCQLIQ-------PPPETVFFITPQKD 128 (369)
T ss_pred EEEECCCCCCHHHHHHHhhhcCccc-------CCCCceEEECCCCC
Confidence 4789999999983321111111111 23567999999874
No 482
>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion. These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence.
Probab=90.12 E-value=0.16 Score=49.93 Aligned_cols=47 Identities=32% Similarity=0.301 Sum_probs=35.5
Q ss_pred CEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHH
Q 010357 58 HVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHK 115 (512)
Q Consensus 58 ~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~ 115 (512)
++++.||||||||..+++|-+-.. +..++++=|.-++........+.
T Consensus 1 H~lv~g~tGsGKt~~~viP~ll~~-----------~~s~vv~D~Kge~~~~t~~~r~~ 47 (384)
T cd01126 1 HVLVFAPTRSGKGVGFVIPNLLTW-----------PGSVVVLDPKGENFELTSEHRRA 47 (384)
T ss_pred CeeEecCCCCCCccEEEccchhcC-----------CCCEEEEccchhHHHHHHHHHHH
Confidence 478999999999999887755421 34588888888988766655554
No 483
>PRK13764 ATPase; Provisional
Probab=90.11 E-value=0.62 Score=47.95 Aligned_cols=26 Identities=23% Similarity=0.383 Sum_probs=19.1
Q ss_pred cCCCEEEEccCCChHhHHHHHHHHHHH
Q 010357 55 SGRHVLVNAATGTGKTVAYLAPIINHL 81 (512)
Q Consensus 55 ~~~~~lv~~pTGsGKT~~~~~~~~~~~ 81 (512)
.+++++++||||||||..... ++..+
T Consensus 256 ~~~~ILIsG~TGSGKTTll~A-L~~~i 281 (602)
T PRK13764 256 RAEGILIAGAPGAGKSTFAQA-LAEFY 281 (602)
T ss_pred cCCEEEEECCCCCCHHHHHHH-HHHHH
Confidence 456899999999999976543 33444
No 484
>TIGR03754 conj_TOL_TraD conjugative coupling factor TraD, TOL family. Members of this protein are assigned by homology to the TraD family of conjugative coupling factor. This particular clade serves as a marker for an extended gene region that occurs occasionally on plasmids, including the toluene catabolism TOL plasmid. More commonly, the gene region is chromosomal, flanked by various markers of conjugative transfer and insertion.
Probab=90.03 E-value=1.1 Score=46.55 Aligned_cols=52 Identities=25% Similarity=0.308 Sum_probs=38.4
Q ss_pred CCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcH--HHHHHHHHHHHHHH
Q 010357 57 RHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTR--ELCLQVYEILHKLL 117 (512)
Q Consensus 57 ~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~--~L~~q~~~~~~~~~ 117 (512)
.+.+|.|+||+|||..+...+.+.+.. +..++++=|-. ++...+...++...
T Consensus 181 gHtlV~GtTGsGKT~l~~~li~q~i~~---------g~~vi~fDpkgD~el~~~~~~~~~~~G 234 (643)
T TIGR03754 181 GHTLVLGTTRVGKTRLAELLITQDIRR---------GDVVIVFDPKGDADLLKRMYAEAKRAG 234 (643)
T ss_pred CceEEECCCCCCHHHHHHHHHHHHHHc---------CCeEEEEeCCCCHHHHHHHHHHHHHhC
Confidence 578999999999999988887777754 56688888876 44445555555543
No 485
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=89.99 E-value=1.6 Score=44.73 Aligned_cols=92 Identities=15% Similarity=0.172 Sum_probs=64.9
Q ss_pred HHHHHHHHHhhhc-cccCce-EEEEeecchhhhhHHHhhhhhcCCCCCCChhHHHhhhhccceeeecCCCCHHHHHHHHH
Q 010357 303 LAVLLSILKHLFD-TEVSQK-LVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFG 380 (512)
Q Consensus 303 ~~~l~~~l~~~~~-~~~~~~-~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~l~g~~~~~~r~~~~~ 380 (512)
...++..+..+.. ...... +||+++|++.+..+++.+....... ++..+..+.|+++...+...++
T Consensus 81 ~Af~lP~l~~l~~~~~~~~~~aLil~PTRELA~Qi~~~~~~~~~~~------------~~~~~~~i~GG~~~~~q~~~l~ 148 (513)
T COG0513 81 AAFLLPLLQKILKSVERKYVSALILAPTRELAVQIAEELRKLGKNL------------GGLRVAVVYGGVSIRKQIEALK 148 (513)
T ss_pred HHHHHHHHHHHhcccccCCCceEEECCCHHHHHHHHHHHHHHHhhc------------CCccEEEEECCCCHHHHHHHHh
Confidence 4455556655431 122222 9999999999999999998764321 1456888999988777775554
Q ss_pred hhhcCCCcEEEeecc-----cccC-CCCCCCcEEEE
Q 010357 381 AFKTEKKALLLSTDV-----AARG-LDFPKVKCIIQ 410 (512)
Q Consensus 381 ~f~~~~~~vLvaT~~-----~~~G-ldip~~~~VI~ 410 (512)
. | .+|||||+- +.+| +|+..+.++|.
T Consensus 149 ~---~-~~ivVaTPGRllD~i~~~~l~l~~v~~lVl 180 (513)
T COG0513 149 R---G-VDIVVATPGRLLDLIKRGKLDLSGVETLVL 180 (513)
T ss_pred c---C-CCEEEECccHHHHHHHcCCcchhhcCEEEe
Confidence 4 6 899999974 5566 88888998884
No 486
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.97 E-value=2.8 Score=43.69 Aligned_cols=23 Identities=22% Similarity=0.124 Sum_probs=18.7
Q ss_pred CEEEEccCCChHhHHHHHHHHHH
Q 010357 58 HVLVNAATGTGKTVAYLAPIINH 80 (512)
Q Consensus 58 ~~lv~~pTGsGKT~~~~~~~~~~ 80 (512)
..|++||.|+|||.++...+...
T Consensus 40 a~Lf~Gp~GvGKttlA~~lAk~L 62 (620)
T PRK14954 40 GYIFSGLRGVGKTTAARVFAKAV 62 (620)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999998887766554
No 487
>cd01127 TrwB Bacterial conjugation protein TrwB, ATP binding domain. TrwB is a homohexamer encoded by conjugative plasmids in Gram-negative bacteria. TrwB also has an all alpha domain which has been hypothesized to be responsible for DNA binding. TrwB is a component of Type IV secretion and is responsible for the horizontal transfer of DNA between bacteria.
Probab=89.96 E-value=0.3 Score=48.42 Aligned_cols=46 Identities=22% Similarity=0.260 Sum_probs=30.7
Q ss_pred hhcCCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcHHHHH
Q 010357 53 ILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCL 107 (512)
Q Consensus 53 ~~~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~ 107 (512)
-...+++++.|+||||||......+.+.... +..++|+=|..++..
T Consensus 39 ~~~~~h~~i~g~tGsGKt~~i~~l~~~~~~~---------~~~~vi~D~kg~~~~ 84 (410)
T cd01127 39 DAEEAHTMIIGTTGTGKTTQIRELLASIRAR---------GDRAIIYDPNGGFVS 84 (410)
T ss_pred chhhccEEEEcCCCCCHHHHHHHHHHHHHhc---------CCCEEEEeCCcchhH
Confidence 3345799999999999998643333333322 455788888777654
No 488
>PF01580 FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR002543 The FtsK/SpoIIIE domain is found extensively in a wide variety of proteins from prokaryotes and plasmids [] some of which contain up to three copies.The domain contains a putative ATP binding P-loop motif. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification []. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer []. ; GO: 0000166 nucleotide binding, 0003677 DNA binding, 0005524 ATP binding, 0007049 cell cycle, 0007059 chromosome segregation, 0051301 cell division, 0016021 integral to membrane; PDB: 2IUS_E 2IUU_A 2IUT_A.
Probab=89.92 E-value=0.66 Score=41.02 Aligned_cols=29 Identities=28% Similarity=0.517 Sum_probs=20.5
Q ss_pred CCCEEEEccCCChHhHHHHHHHHHHHhhc
Q 010357 56 GRHVLVNAATGTGKTVAYLAPIINHLQSY 84 (512)
Q Consensus 56 ~~~~lv~~pTGsGKT~~~~~~~~~~~~~~ 84 (512)
..++++.|+||||||.+....+...+...
T Consensus 38 ~~h~li~G~tgsGKS~~l~~ll~~l~~~~ 66 (205)
T PF01580_consen 38 NPHLLIAGATGSGKSTLLRTLLLSLALTY 66 (205)
T ss_dssp S-SEEEE--TTSSHHHHHHHHHHHHHTT-
T ss_pred CceEEEEcCCCCCccHHHHHHHHHHHHHh
Confidence 35899999999999988877777766643
No 489
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=89.88 E-value=0.52 Score=41.43 Aligned_cols=18 Identities=44% Similarity=0.628 Sum_probs=14.7
Q ss_pred CEEEEccCCChHhHHHHH
Q 010357 58 HVLVNAATGTGKTVAYLA 75 (512)
Q Consensus 58 ~~lv~~pTGsGKT~~~~~ 75 (512)
-++++||||||||.....
T Consensus 3 lilI~GptGSGKTTll~~ 20 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAA 20 (198)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 368999999999977544
No 490
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=89.85 E-value=0.54 Score=40.98 Aligned_cols=22 Identities=36% Similarity=0.394 Sum_probs=16.2
Q ss_pred EEEEccCCChHhHHHHHHHHHH
Q 010357 59 VLVNAATGTGKTVAYLAPIINH 80 (512)
Q Consensus 59 ~lv~~pTGsGKT~~~~~~~~~~ 80 (512)
.++.||||+|||-.+...+-..
T Consensus 4 ~~i~GpT~tGKt~~ai~lA~~~ 25 (233)
T PF01745_consen 4 YLIVGPTGTGKTALAIALAQKT 25 (233)
T ss_dssp EEEE-STTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCChhHHHHHHHHHh
Confidence 4789999999998876655443
No 491
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=89.81 E-value=0.87 Score=42.95 Aligned_cols=47 Identities=23% Similarity=0.263 Sum_probs=32.1
Q ss_pred CCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcHHHHHHHHH
Q 010357 56 GRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYE 111 (512)
Q Consensus 56 ~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~ 111 (512)
|+-+-+.+|+|+|||..++..+.+.... +..++++-|-..+...+..
T Consensus 53 G~ivEi~G~~ssGKttLaL~~ia~~q~~---------g~~~a~ID~e~~ld~~~a~ 99 (322)
T PF00154_consen 53 GRIVEIYGPESSGKTTLALHAIAEAQKQ---------GGICAFIDAEHALDPEYAE 99 (322)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHT---------T-EEEEEESSS---HHHHH
T ss_pred CceEEEeCCCCCchhhhHHHHHHhhhcc---------cceeEEecCcccchhhHHH
Confidence 4456689999999998888777665444 7779999888787654443
No 492
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=89.58 E-value=0.54 Score=42.33 Aligned_cols=38 Identities=18% Similarity=0.284 Sum_probs=29.0
Q ss_pred cCCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcC
Q 010357 55 SGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVP 101 (512)
Q Consensus 55 ~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P 101 (512)
.|.-+++.|++|+|||..++..+.+.+.. +.+++|+.-
T Consensus 22 ~g~i~~i~G~~GsGKT~l~~~la~~~~~~---------~~~v~yi~~ 59 (225)
T PRK09361 22 RGTITQIYGPPGSGKTNICLQLAVEAAKN---------GKKVIYIDT 59 (225)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHC---------CCeEEEEEC
Confidence 35567999999999999888877776644 566777753
No 493
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=89.52 E-value=0.57 Score=39.85 Aligned_cols=47 Identities=13% Similarity=0.077 Sum_probs=34.9
Q ss_pred EEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHH
Q 010357 59 VLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLL 117 (512)
Q Consensus 59 ~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 117 (512)
+++.|++|||||..+...+.. . +.+++++.....+-..+.+.+..+-
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~---~---------~~~~~y~at~~~~d~em~~rI~~H~ 48 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAE---L---------GGPVTYIATAEAFDDEMAERIARHR 48 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHh---c---------CCCeEEEEccCcCCHHHHHHHHHHH
Confidence 578999999999877665543 1 4568999888887777777666543
No 494
>PF02534 T4SS-DNA_transf: Type IV secretory system Conjugative DNA transfer; InterPro: IPR003688 This entry represents TraG proteins and their homologues. These proteins contain a P-loop and walker-B site for nucleotide binding. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems [, ].; GO: 0009291 unidirectional conjugation, 0016020 membrane
Probab=89.48 E-value=0.3 Score=49.57 Aligned_cols=49 Identities=31% Similarity=0.359 Sum_probs=37.3
Q ss_pred CCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHH
Q 010357 57 RHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKL 116 (512)
Q Consensus 57 ~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 116 (512)
.++++.||||||||..+++|.+-. . ..-+++.=|-.+|.......++..
T Consensus 45 ~h~lvig~tgSGKt~~~viP~ll~--~---------~~s~iV~D~KgEl~~~t~~~r~~~ 93 (469)
T PF02534_consen 45 THVLVIGPTGSGKTTSFVIPNLLN--Y---------PGSMIVTDPKGELYEKTAGYRKKR 93 (469)
T ss_pred eEEEEEeCCCCCccceeeHhHHHh--c---------cCCEEEEECCCcHHHHHHHHHHHC
Confidence 369999999999999998886532 1 224788888888887777666654
No 495
>KOG2036 consensus Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=89.46 E-value=3.8 Score=42.10 Aligned_cols=55 Identities=25% Similarity=0.224 Sum_probs=36.8
Q ss_pred cHHHHHHHHHhhc-------CCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcHHH
Q 010357 43 TKVQAQAIPVILS-------GRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTREL 105 (512)
Q Consensus 43 ~~~Q~~~~~~~~~-------~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L 105 (512)
|--|..|+..+.. +..+-+.|.-|-||+.+..+.+..+... .-..+.|-.|+-+=
T Consensus 255 T~dQakav~~f~dai~eK~lr~~vsLtA~RGRGKSAALGlsiA~AVa~--------GysnIyvtSPspeN 316 (1011)
T KOG2036|consen 255 TLDQAKAVLTFFDAIVEKTLRSTVSLTASRGRGKSAALGLSIAGAVAF--------GYSNIYVTSPSPEN 316 (1011)
T ss_pred hHHHHHHHHHHHHHHHHhhhcceEEEEecCCCCchhhhhHHHHHHHhc--------CcceEEEcCCChHH
Confidence 5668877755432 2346789999999999988888777654 11235666677543
No 496
>PHA00012 I assembly protein
Probab=89.44 E-value=3.9 Score=38.39 Aligned_cols=25 Identities=28% Similarity=0.429 Sum_probs=21.2
Q ss_pred EEEEccCCChHhHHHHHHHHHHHhh
Q 010357 59 VLVNAATGTGKTVAYLAPIINHLQS 83 (512)
Q Consensus 59 ~lv~~pTGsGKT~~~~~~~~~~~~~ 83 (512)
-++.|..|+|||+.+..-+...+.+
T Consensus 4 ylITGkPGSGKSl~aV~~I~~~L~~ 28 (361)
T PHA00012 4 YVVTGKLGAGKTLVAVSRIQDKLVK 28 (361)
T ss_pred EEEecCCCCCchHHHHHHHHHHHHc
Confidence 4789999999999998877777755
No 497
>COG0210 UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair]
Probab=89.39 E-value=1.1 Score=47.81 Aligned_cols=71 Identities=24% Similarity=0.167 Sum_probs=57.3
Q ss_pred CCcHHHHHHHHHhhcCCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHHh
Q 010357 41 APTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLH 118 (512)
Q Consensus 41 ~~~~~Q~~~~~~~~~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~ 118 (512)
.+++-|++++... ...++|.|..|||||.+..--+.+.+..... ....++.++=|+-.|.++.+.+..+..
T Consensus 2 ~Ln~~Q~~av~~~--~gp~lV~AGaGsGKT~vlt~Ria~li~~~~v-----~p~~Il~vTFTnkAA~em~~Rl~~~~~ 72 (655)
T COG0210 2 KLNPEQREAVLHP--DGPLLVLAGAGSGKTRVLTERIAYLIAAGGV-----DPEQILAITFTNKAAAEMRERLLKLLG 72 (655)
T ss_pred CCCHHHHHHHhcC--CCCeEEEECCCCCchhhHHHHHHHHHHcCCc-----ChHHeeeeechHHHHHHHHHHHHHHhC
Confidence 4788999999765 5589999999999999988888877766332 234589999999999999988888864
No 498
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=89.24 E-value=0.26 Score=45.66 Aligned_cols=22 Identities=41% Similarity=0.530 Sum_probs=18.3
Q ss_pred hcCCCEEEEccCCChHhHHHHH
Q 010357 54 LSGRHVLVNAATGTGKTVAYLA 75 (512)
Q Consensus 54 ~~~~~~lv~~pTGsGKT~~~~~ 75 (512)
.++++++++||+|+|||....-
T Consensus 31 ~~~~pvLl~G~~GtGKT~li~~ 52 (272)
T PF12775_consen 31 SNGRPVLLVGPSGTGKTSLIQN 52 (272)
T ss_dssp HCTEEEEEESSTTSSHHHHHHH
T ss_pred HcCCcEEEECCCCCchhHHHHh
Confidence 4678999999999999976543
No 499
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=89.15 E-value=5.7 Score=36.72 Aligned_cols=24 Identities=25% Similarity=0.126 Sum_probs=19.0
Q ss_pred EEEccCCChHhHHHHHHHHHHHhh
Q 010357 60 LVNAATGTGKTVAYLAPIINHLQS 83 (512)
Q Consensus 60 lv~~pTGsGKT~~~~~~~~~~~~~ 83 (512)
-+.|+||+||.+++-+.+.+....
T Consensus 114 SfHG~tGTGKN~Va~iiA~n~~~~ 137 (344)
T KOG2170|consen 114 SFHGWTGTGKNYVAEIIAENLYRG 137 (344)
T ss_pred EecCCCCCchhHHHHHHHHHHHhc
Confidence 468999999999998877665433
No 500
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=89.14 E-value=0.36 Score=32.98 Aligned_cols=18 Identities=28% Similarity=0.582 Sum_probs=15.0
Q ss_pred CCCEEEEccCCChHhHHH
Q 010357 56 GRHVLVNAATGTGKTVAY 73 (512)
Q Consensus 56 ~~~~lv~~pTGsGKT~~~ 73 (512)
|...++.+|+|||||..+
T Consensus 23 g~~tli~G~nGsGKSTll 40 (62)
T PF13555_consen 23 GDVTLITGPNGSGKSTLL 40 (62)
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 446899999999999664
Done!