Query 010357
Match_columns 512
No_of_seqs 207 out of 2387
Neff 10.5
Searched_HMMs 29240
Date Mon Mar 25 05:03:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010357.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010357hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2db3_A ATP-dependent RNA helic 100.0 2.1E-58 7.1E-63 459.0 43.0 363 16-452 54-417 (434)
2 2i4i_A ATP-dependent RNA helic 100.0 8.3E-56 2.9E-60 440.8 41.2 368 17-453 14-393 (417)
3 2j0s_A ATP-dependent RNA helic 100.0 4.7E-56 1.6E-60 441.4 38.9 369 15-463 34-404 (410)
4 1s2m_A Putative ATP-dependent 100.0 7.4E-55 2.5E-59 431.5 39.9 367 16-463 19-386 (400)
5 1xti_A Probable ATP-dependent 100.0 2.9E-54 1E-58 426.0 39.7 370 16-463 6-379 (391)
6 3fht_A ATP-dependent RNA helic 100.0 2.7E-54 9.2E-59 429.4 39.0 375 8-463 15-401 (412)
7 3eiq_A Eukaryotic initiation f 100.0 1.5E-54 5E-59 431.5 36.0 366 17-462 39-407 (414)
8 1hv8_A Putative ATP-dependent 100.0 1E-53 3.5E-58 418.5 39.4 360 16-462 4-365 (367)
9 3sqw_A ATP-dependent RNA helic 100.0 1.5E-53 5.3E-58 439.9 37.9 386 18-459 17-415 (579)
10 3i5x_A ATP-dependent RNA helic 100.0 3.1E-53 1.1E-57 437.7 37.3 386 19-460 69-467 (563)
11 3fmp_B ATP-dependent RNA helic 100.0 7E-55 2.4E-59 440.9 20.2 372 10-462 84-467 (479)
12 3pey_A ATP-dependent RNA helic 100.0 2.6E-52 8.8E-57 412.8 38.1 354 17-454 4-368 (395)
13 1fuu_A Yeast initiation factor 100.0 5.2E-54 1.8E-58 424.7 22.8 365 17-462 20-386 (394)
14 2z0m_A 337AA long hypothetical 100.0 1.7E-50 5.8E-55 390.9 37.9 332 25-453 1-332 (337)
15 2v1x_A ATP-dependent DNA helic 100.0 2E-50 7E-55 412.3 34.0 344 19-452 22-383 (591)
16 1oyw_A RECQ helicase, ATP-depe 100.0 4.6E-50 1.6E-54 406.0 32.7 342 18-454 2-354 (523)
17 3fho_A ATP-dependent RNA helic 100.0 1.1E-49 3.9E-54 403.6 23.4 361 19-463 120-492 (508)
18 3oiy_A Reverse gyrase helicase 100.0 3.3E-48 1.1E-52 384.9 29.6 336 27-453 8-373 (414)
19 2va8_A SSO2462, SKI2-type heli 100.0 1.3E-45 4.5E-50 390.3 34.9 370 16-445 6-410 (715)
20 2zj8_A DNA helicase, putative 100.0 9.1E-46 3.1E-50 391.2 30.5 361 19-446 2-390 (720)
21 3l9o_A ATP-dependent RNA helic 100.0 5.1E-46 1.7E-50 403.0 28.0 398 18-454 162-609 (1108)
22 2p6r_A Afuhel308 helicase; pro 100.0 1.4E-45 4.8E-50 388.7 27.2 365 19-446 2-391 (702)
23 4a2p_A RIG-I, retinoic acid in 100.0 6.7E-45 2.3E-49 375.9 30.1 385 38-446 4-511 (556)
24 3tbk_A RIG-I helicase domain; 100.0 1.7E-44 5.7E-49 373.0 29.5 389 41-451 4-515 (555)
25 2xgj_A ATP-dependent RNA helic 100.0 6.9E-44 2.4E-48 383.1 34.4 375 35-453 81-510 (1010)
26 4a2q_A RIG-I, retinoic acid in 100.0 2.9E-44 1E-48 383.3 31.3 388 36-446 243-752 (797)
27 2ykg_A Probable ATP-dependent 100.0 7.8E-45 2.7E-49 384.7 26.4 387 31-449 4-522 (696)
28 4ddu_A Reverse gyrase; topoiso 100.0 2.3E-44 8E-49 389.9 29.3 354 28-472 66-527 (1104)
29 4f92_B U5 small nuclear ribonu 100.0 1.7E-43 5.8E-48 396.0 30.7 377 24-460 910-1325(1724)
30 1wp9_A ATP-dependent RNA helic 100.0 9.6E-43 3.3E-47 354.3 32.3 360 41-445 9-477 (494)
31 1tf5_A Preprotein translocase 100.0 5.4E-43 1.9E-47 356.8 26.3 367 36-444 79-546 (844)
32 1gm5_A RECG; helicase, replica 100.0 3.8E-43 1.3E-47 365.7 25.5 328 26-446 354-700 (780)
33 1gku_B Reverse gyrase, TOP-RG; 100.0 2.3E-43 7.9E-48 382.7 24.2 335 29-453 46-464 (1054)
34 4a2w_A RIG-I, retinoic acid in 100.0 9.3E-43 3.2E-47 375.1 28.4 387 36-445 243-751 (936)
35 4f92_B U5 small nuclear ribonu 100.0 1.1E-42 3.7E-47 389.5 26.8 373 38-461 76-491 (1724)
36 4a4z_A Antiviral helicase SKI2 100.0 1.8E-42 6.3E-47 372.1 26.0 383 29-453 28-504 (997)
37 2eyq_A TRCF, transcription-rep 100.0 2.7E-41 9.2E-46 368.4 35.4 328 22-444 585-923 (1151)
38 4gl2_A Interferon-induced heli 100.0 4.5E-43 1.5E-47 371.4 18.2 384 38-443 5-519 (699)
39 2fsf_A Preprotein translocase 100.0 1.1E-40 3.9E-45 338.7 28.5 372 36-444 70-584 (853)
40 1nkt_A Preprotein translocase 100.0 3.1E-40 1.1E-44 335.7 28.8 368 35-445 106-619 (922)
41 2xau_A PRE-mRNA-splicing facto 100.0 1.8E-39 6.1E-44 340.7 30.9 408 16-509 70-506 (773)
42 2oca_A DAR protein, ATP-depend 100.0 5.2E-40 1.8E-44 334.8 23.6 336 41-441 113-453 (510)
43 2fwr_A DNA repair protein RAD2 100.0 1.3E-39 4.5E-44 328.6 19.6 326 41-442 93-453 (472)
44 2jlq_A Serine protease subunit 100.0 2E-39 6.8E-44 323.0 17.8 289 38-443 1-311 (451)
45 2whx_A Serine protease/ntpase/ 100.0 1.2E-40 4.1E-45 341.1 9.2 318 19-454 150-492 (618)
46 1yks_A Genome polyprotein [con 100.0 1.5E-39 5.3E-44 322.2 8.2 279 52-453 4-312 (440)
47 2wv9_A Flavivirin protease NS2 100.0 7.7E-39 2.6E-43 329.6 9.9 297 41-453 215-546 (673)
48 3h1t_A Type I site-specific re 100.0 1.8E-37 6.2E-42 321.1 19.1 352 41-441 178-556 (590)
49 3o8b_A HCV NS3 protease/helica 100.0 6.7E-38 2.3E-42 317.2 15.2 279 42-446 218-517 (666)
50 2z83_A Helicase/nucleoside tri 100.0 3.7E-38 1.3E-42 314.3 12.2 272 51-443 16-313 (459)
51 3dmq_A RNA polymerase-associat 100.0 6.8E-36 2.3E-40 322.1 26.4 371 41-460 153-633 (968)
52 2v6i_A RNA helicase; membrane, 100.0 9.8E-36 3.4E-40 294.4 19.9 270 55-440 1-288 (431)
53 3fe2_A Probable ATP-dependent 100.0 1.8E-34 6.1E-39 263.9 25.4 215 15-248 26-240 (242)
54 1z63_A Helicase of the SNF2/RA 100.0 5.5E-34 1.9E-38 289.7 28.3 358 41-454 37-465 (500)
55 3ber_A Probable ATP-dependent 100.0 5.5E-34 1.9E-38 261.1 25.2 208 15-245 40-247 (249)
56 3fmo_B ATP-dependent RNA helic 100.0 1.6E-34 5.5E-39 271.5 22.1 213 9-246 83-298 (300)
57 1vec_A ATP-dependent RNA helic 100.0 7E-34 2.4E-38 253.8 25.0 204 17-243 2-205 (206)
58 3rc3_A ATP-dependent RNA helic 100.0 4.3E-34 1.5E-38 293.3 25.3 286 52-454 151-455 (677)
59 3iuy_A Probable ATP-dependent 100.0 5.7E-34 2E-38 258.4 23.1 211 15-244 16-227 (228)
60 1q0u_A Bstdead; DEAD protein, 100.0 1E-33 3.4E-38 255.0 21.7 209 17-248 3-214 (219)
61 2pl3_A Probable ATP-dependent 100.0 3.7E-33 1.3E-37 254.4 25.4 215 13-247 20-234 (236)
62 2oxc_A Probable ATP-dependent 100.0 3.4E-33 1.2E-37 253.3 24.5 207 15-245 21-228 (230)
63 3ly5_A ATP-dependent RNA helic 100.0 2.5E-33 8.5E-38 258.8 23.1 208 15-241 49-258 (262)
64 2gxq_A Heat resistant RNA depe 100.0 5.2E-33 1.8E-37 248.4 23.9 204 19-245 2-205 (207)
65 3bor_A Human initiation factor 100.0 2.9E-33 9.8E-38 254.9 22.4 207 16-246 28-235 (237)
66 1qde_A EIF4A, translation init 100.0 7.4E-33 2.5E-37 250.5 23.8 208 16-248 12-219 (224)
67 3mwy_W Chromo domain-containin 100.0 7.4E-33 2.5E-37 294.4 25.4 363 41-453 236-696 (800)
68 1t6n_A Probable ATP-dependent 100.0 1.4E-32 4.7E-37 247.9 23.2 205 17-244 13-219 (220)
69 1wrb_A DJVLGB; RNA helicase, D 100.0 1.6E-32 5.5E-37 252.9 22.6 219 16-248 21-242 (253)
70 1z3i_X Similar to RAD54-like; 100.0 2.1E-31 7.2E-36 276.3 32.9 359 41-443 55-528 (644)
71 3jux_A Protein translocase sub 100.0 3.7E-31 1.3E-35 263.5 32.0 338 34-444 69-588 (822)
72 2w00_A HSDR, R.ECOR124I; ATP-b 100.0 4.9E-32 1.7E-36 289.4 22.9 349 41-441 271-707 (1038)
73 3dkp_A Probable ATP-dependent 100.0 5E-32 1.7E-36 248.5 17.8 211 17-248 24-243 (245)
74 2ipc_A Preprotein translocase 100.0 4.9E-27 1.7E-31 238.3 33.7 134 34-182 73-215 (997)
75 1c4o_A DNA nucleotide excision 100.0 2.2E-27 7.5E-32 245.7 29.6 128 300-447 422-554 (664)
76 2d7d_A Uvrabc system protein B 100.0 2.1E-26 7.2E-31 238.2 29.2 128 300-447 428-560 (661)
77 2hjv_A ATP-dependent RNA helic 100.0 3.5E-27 1.2E-31 201.1 17.6 153 286-459 6-159 (163)
78 1t5i_A C_terminal domain of A 99.9 5.2E-27 1.8E-31 201.5 15.0 156 287-463 3-160 (172)
79 1fuk_A Eukaryotic initiation f 99.9 1.2E-26 4.2E-31 198.2 15.9 153 289-462 3-157 (165)
80 2rb4_A ATP-dependent RNA helic 99.9 1.1E-26 3.8E-31 200.6 15.7 156 287-463 5-168 (175)
81 3eaq_A Heat resistant RNA depe 99.9 3.4E-26 1.1E-30 203.5 16.9 152 290-462 6-158 (212)
82 2p6n_A ATP-dependent RNA helic 99.9 1.9E-26 6.5E-31 201.0 14.8 145 287-453 27-172 (191)
83 2jgn_A DBX, DDX3, ATP-dependen 99.9 2.3E-26 8E-31 199.7 15.1 149 285-453 15-163 (185)
84 3i32_A Heat resistant RNA depe 99.9 3.5E-25 1.2E-29 205.8 16.7 152 290-462 3-155 (300)
85 2yjt_D ATP-dependent RNA helic 99.9 1.5E-26 5E-31 198.7 0.0 145 289-454 3-148 (170)
86 3b6e_A Interferon-induced heli 99.9 3.8E-24 1.3E-28 192.2 12.6 179 38-224 30-216 (216)
87 2vl7_A XPD; helicase, unknown 99.9 3E-22 1E-26 203.3 21.4 114 304-441 370-519 (540)
88 3crv_A XPD/RAD3 related DNA he 99.9 1.9E-20 6.4E-25 191.0 28.9 132 38-183 1-187 (551)
89 1rif_A DAR protein, DNA helica 99.9 2.8E-22 9.4E-27 187.3 10.3 157 41-232 113-269 (282)
90 3llm_A ATP-dependent RNA helic 99.9 3.6E-21 1.2E-25 174.4 16.5 170 41-241 61-232 (235)
91 2fz4_A DNA repair protein RAD2 99.8 1.5E-19 5E-24 163.4 13.1 138 41-227 93-230 (237)
92 4a15_A XPD helicase, ATP-depen 99.8 5.5E-18 1.9E-22 173.9 23.7 71 41-119 3-77 (620)
93 1z5z_A Helicase of the SNF2/RA 99.8 8.8E-19 3E-23 160.9 11.3 128 298-443 93-224 (271)
94 1w36_D RECD, exodeoxyribonucle 98.8 2.3E-08 7.7E-13 102.6 12.4 86 28-120 136-223 (608)
95 3e1s_A Exodeoxyribonuclease V, 98.4 2.5E-06 8.6E-11 86.5 12.4 65 38-112 187-251 (574)
96 4b3f_X DNA-binding protein smu 98.4 1.5E-06 5.2E-11 90.1 11.0 67 41-116 189-256 (646)
97 3upu_A ATP-dependent DNA helic 98.3 2.8E-06 9.7E-11 84.3 11.2 69 37-113 21-94 (459)
98 2gk6_A Regulator of nonsense t 98.2 8E-06 2.7E-10 84.2 13.1 69 40-116 179-247 (624)
99 2xzl_A ATP-dependent helicase 98.2 2.7E-05 9.4E-10 82.1 16.0 69 40-116 359-427 (802)
100 2wjy_A Regulator of nonsense t 98.1 1.7E-05 5.9E-10 83.5 12.4 68 41-116 356-423 (800)
101 3lfu_A DNA helicase II; SF1 he 98.1 0.00081 2.8E-08 69.9 24.0 72 40-118 8-79 (647)
102 3hgt_A HDA1 complex subunit 3; 97.9 5.2E-05 1.8E-09 69.6 10.3 123 298-444 106-238 (328)
103 2o0j_A Terminase, DNA packagin 97.7 0.00034 1.2E-08 66.6 12.5 74 41-121 163-236 (385)
104 3cpe_A Terminase, DNA packagin 97.4 0.0018 6.2E-08 66.2 14.7 74 41-121 163-236 (592)
105 3ec2_A DNA replication protein 97.1 0.002 6.9E-08 54.6 8.9 26 55-80 37-62 (180)
106 2orw_A Thymidine kinase; TMTK, 97.1 0.00023 8E-09 60.7 2.8 39 56-103 3-41 (184)
107 1xx6_A Thymidine kinase; NESG, 97.1 0.0013 4.5E-08 56.1 7.5 39 56-103 8-46 (191)
108 2j9r_A Thymidine kinase; TK1, 97.0 0.0014 4.9E-08 56.4 6.7 40 56-104 28-67 (214)
109 2b8t_A Thymidine kinase; deoxy 96.8 0.0011 3.7E-08 58.1 4.9 91 55-181 11-101 (223)
110 3h4m_A Proteasome-activating n 96.8 0.0052 1.8E-07 56.4 9.4 62 13-77 9-72 (285)
111 1l8q_A Chromosomal replication 96.7 0.01 3.5E-07 55.6 11.2 25 56-80 37-61 (324)
112 3vkw_A Replicase large subunit 96.6 0.0023 8E-08 61.7 5.8 83 58-180 163-245 (446)
113 1pjr_A PCRA; DNA repair, DNA r 96.6 0.0058 2E-07 64.1 9.2 72 40-118 10-81 (724)
114 1uaa_A REP helicase, protein ( 96.5 0.0043 1.5E-07 64.6 7.9 71 41-118 2-72 (673)
115 2kjq_A DNAA-related protein; s 96.5 0.0017 5.7E-08 53.1 3.6 24 55-78 35-58 (149)
116 1w4r_A Thymidine kinase; type 96.5 0.0061 2.1E-07 51.6 6.9 38 56-102 20-57 (195)
117 2zpa_A Uncharacterized protein 96.5 0.0028 9.7E-08 64.3 5.7 113 41-226 175-289 (671)
118 3e2i_A Thymidine kinase; Zn-bi 96.5 0.0029 9.9E-08 54.4 5.0 41 55-104 27-67 (219)
119 3u61_B DNA polymerase accessor 96.5 0.017 5.8E-07 54.1 10.8 47 15-77 20-69 (324)
120 2orv_A Thymidine kinase; TP4A 96.4 0.0035 1.2E-07 54.5 5.5 40 56-104 19-58 (234)
121 3eie_A Vacuolar protein sortin 96.3 0.016 5.3E-07 54.3 9.6 61 15-79 12-74 (322)
122 1d2n_A N-ethylmaleimide-sensit 96.3 0.048 1.7E-06 49.5 12.7 23 57-79 65-87 (272)
123 3u4q_A ATP-dependent helicase/ 96.2 0.011 3.6E-07 66.0 9.0 72 41-117 10-81 (1232)
124 3te6_A Regulatory protein SIR3 96.2 0.065 2.2E-06 49.5 12.8 26 55-80 44-69 (318)
125 2w58_A DNAI, primosome compone 96.1 0.029 9.9E-07 48.3 9.8 24 57-80 55-78 (202)
126 4b4t_J 26S protease regulatory 96.0 0.027 9.1E-07 53.7 9.7 62 15-80 142-206 (405)
127 3cf0_A Transitional endoplasmi 96.0 0.033 1.1E-06 51.5 10.3 62 15-78 9-71 (301)
128 1jbk_A CLPB protein; beta barr 96.0 0.065 2.2E-06 45.3 11.5 24 56-79 43-66 (195)
129 2chg_A Replication factor C sm 96.0 0.057 1.9E-06 47.0 11.4 22 57-78 39-60 (226)
130 4b4t_M 26S protease regulatory 96.0 0.067 2.3E-06 51.7 12.5 63 15-80 175-239 (434)
131 2z4s_A Chromosomal replication 96.0 0.035 1.2E-06 54.3 10.6 24 56-79 130-153 (440)
132 1a5t_A Delta prime, HOLB; zinc 95.9 0.024 8.2E-07 53.3 8.9 39 42-80 3-48 (334)
133 2p65_A Hypothetical protein PF 95.9 0.067 2.3E-06 45.0 11.0 25 56-80 43-67 (187)
134 2qby_B CDC6 homolog 3, cell di 95.7 0.074 2.5E-06 50.9 11.6 24 56-79 45-68 (384)
135 2qz4_A Paraplegin; AAA+, SPG7, 95.7 0.081 2.8E-06 47.5 11.1 59 17-78 2-61 (262)
136 3kl4_A SRP54, signal recogniti 95.7 0.051 1.8E-06 52.5 10.0 128 58-234 99-232 (433)
137 3bos_A Putative DNA replicatio 95.5 0.026 9E-07 50.0 7.2 26 55-80 51-76 (242)
138 3vfd_A Spastin; ATPase, microt 95.4 0.033 1.1E-06 53.6 7.9 22 56-77 148-169 (389)
139 2qby_A CDC6 homolog 1, cell di 95.4 0.25 8.5E-06 47.1 13.9 23 56-78 45-67 (386)
140 3hu3_A Transitional endoplasmi 95.3 0.036 1.2E-06 54.8 7.8 58 16-76 199-258 (489)
141 2v1u_A Cell division control p 95.3 0.16 5.4E-06 48.5 12.3 25 55-79 43-67 (387)
142 2qp9_X Vacuolar protein sortin 95.2 0.021 7E-07 54.2 5.7 60 16-79 46-107 (355)
143 3syl_A Protein CBBX; photosynt 95.0 0.11 3.8E-06 48.0 9.9 23 57-79 68-90 (309)
144 2dr3_A UPF0273 protein PH0284; 95.0 0.26 8.8E-06 43.6 12.0 50 55-114 22-71 (247)
145 2q6t_A DNAB replication FORK h 95.0 0.085 2.9E-06 51.7 9.4 40 55-102 199-238 (444)
146 2r6a_A DNAB helicase, replicat 94.9 0.082 2.8E-06 51.9 9.1 40 54-101 201-240 (454)
147 1sxj_E Activator 1 40 kDa subu 94.7 0.22 7.4E-06 47.0 11.3 51 15-78 8-58 (354)
148 2w0m_A SSO2452; RECA, SSPF, un 94.7 0.043 1.5E-06 48.3 6.0 37 55-100 22-58 (235)
149 3d8b_A Fidgetin-like protein 1 94.5 0.28 9.6E-06 46.4 11.5 23 56-78 117-139 (357)
150 3dm5_A SRP54, signal recogniti 94.4 0.39 1.3E-05 46.5 12.1 24 58-81 102-125 (443)
151 1iqp_A RFCS; clamp loader, ext 94.4 0.19 6.5E-06 46.7 10.0 22 58-79 48-69 (327)
152 2zan_A Vacuolar protein sortin 94.3 0.062 2.1E-06 52.6 6.6 60 15-78 128-189 (444)
153 1fnn_A CDC6P, cell division co 94.2 0.11 3.9E-06 49.6 8.1 20 58-77 46-65 (389)
154 3pvs_A Replication-associated 94.1 0.065 2.2E-06 52.4 6.1 21 57-77 51-71 (447)
155 1sxj_D Activator 1 41 kDa subu 93.9 0.4 1.4E-05 45.0 11.3 23 57-79 59-81 (353)
156 1gm5_A RECG; helicase, replica 93.9 0.19 6.5E-06 52.7 9.6 100 299-413 399-499 (780)
157 1njg_A DNA polymerase III subu 93.9 1.1 3.6E-05 39.2 13.5 21 58-78 47-67 (250)
158 3pfi_A Holliday junction ATP-d 93.6 0.22 7.4E-06 46.7 8.6 20 57-76 56-75 (338)
159 2fna_A Conserved hypothetical 93.6 2.6 9E-05 39.2 16.4 34 43-77 18-51 (357)
160 1sxj_B Activator 1 37 kDa subu 93.5 0.15 5.2E-06 47.3 7.4 22 58-79 44-65 (323)
161 1g5t_A COB(I)alamin adenosyltr 93.5 0.2 7E-06 42.3 7.2 35 57-100 29-63 (196)
162 4a1f_A DNAB helicase, replicat 93.2 0.033 1.1E-06 52.0 2.1 51 53-113 43-93 (338)
163 2ehv_A Hypothetical protein PH 93.2 0.22 7.6E-06 44.2 7.6 29 53-81 27-55 (251)
164 1sxj_C Activator 1 40 kDa subu 93.1 0.49 1.7E-05 44.3 10.2 22 58-79 48-69 (340)
165 1w5s_A Origin recognition comp 92.9 0.93 3.2E-05 43.6 12.2 22 57-78 51-74 (412)
166 3hjh_A Transcription-repair-co 92.8 0.5 1.7E-05 46.4 9.9 52 55-118 13-64 (483)
167 3n70_A Transport activator; si 92.6 0.11 3.7E-06 41.9 4.2 23 53-75 21-43 (145)
168 3io5_A Recombination and repai 92.5 0.11 3.6E-06 47.7 4.4 43 55-105 28-70 (333)
169 2gno_A DNA polymerase III, gam 92.4 0.6 2E-05 42.9 9.5 20 58-77 20-39 (305)
170 3co5_A Putative two-component 92.3 0.1 3.5E-06 42.0 3.7 21 53-73 24-44 (143)
171 1jr3_A DNA polymerase III subu 92.3 0.92 3.2E-05 42.9 11.1 21 58-78 40-60 (373)
172 3cmu_A Protein RECA, recombina 92.2 0.12 4.2E-06 59.1 5.3 41 55-104 1426-1466(2050)
173 2qgz_A Helicase loader, putati 92.0 0.23 8E-06 45.8 6.3 26 56-81 152-177 (308)
174 4b4t_L 26S protease subunit RP 91.9 0.18 6.3E-06 48.7 5.5 63 15-80 175-239 (437)
175 1n0w_A DNA repair protein RAD5 91.7 0.37 1.3E-05 42.5 7.1 25 55-79 23-47 (243)
176 3hr8_A Protein RECA; alpha and 91.5 0.098 3.4E-06 49.2 3.1 40 56-104 61-100 (356)
177 4b4t_H 26S protease regulatory 91.4 0.28 9.4E-06 47.5 6.0 63 15-80 203-267 (467)
178 3oiy_A Reverse gyrase helicase 91.0 0.78 2.7E-05 44.2 9.1 83 317-413 62-148 (414)
179 4b4t_K 26S protease regulatory 90.8 0.3 1E-05 47.1 5.7 63 15-80 166-230 (428)
180 4b4t_I 26S protease regulatory 90.1 0.35 1.2E-05 46.3 5.4 63 15-80 176-240 (437)
181 1e9r_A Conjugal transfer prote 90.0 0.3 1E-05 47.7 5.1 44 55-107 52-95 (437)
182 2z43_A DNA repair and recombin 89.7 0.39 1.3E-05 44.7 5.5 45 56-103 107-151 (324)
183 3pxi_A Negative regulator of g 89.3 1.7 5.8E-05 45.7 10.6 23 58-80 523-545 (758)
184 1t6n_A Probable ATP-dependent 89.3 3.3 0.00011 35.5 11.0 99 299-412 61-166 (220)
185 2eyq_A TRCF, transcription-rep 88.4 1.6 5.6E-05 48.0 10.0 81 318-411 651-732 (1151)
186 2i1q_A DNA repair and recombin 88.4 0.92 3.2E-05 42.0 7.0 25 56-80 98-122 (322)
187 4ddu_A Reverse gyrase; topoiso 88.3 1.4 4.7E-05 48.3 9.2 98 299-412 103-204 (1104)
188 1qvr_A CLPB protein; coiled co 88.0 0.85 2.9E-05 48.7 7.3 25 56-80 191-215 (854)
189 3hws_A ATP-dependent CLP prote 87.6 0.96 3.3E-05 42.7 6.7 24 55-78 50-73 (363)
190 2zts_A Putative uncharacterize 87.6 0.43 1.5E-05 42.2 4.0 40 55-102 29-68 (251)
191 4ag6_A VIRB4 ATPase, type IV s 87.5 0.62 2.1E-05 44.6 5.4 41 55-104 34-74 (392)
192 3cf2_A TER ATPase, transitiona 87.0 0.97 3.3E-05 47.3 6.8 21 57-77 239-259 (806)
193 1xwi_A SKD1 protein; VPS4B, AA 86.9 0.22 7.5E-06 46.3 1.8 60 16-79 7-68 (322)
194 2l8b_A Protein TRAI, DNA helic 86.7 0.92 3.2E-05 37.6 5.1 58 43-108 36-95 (189)
195 3lda_A DNA repair protein RAD5 86.7 1.3 4.3E-05 42.4 6.9 43 56-101 178-220 (400)
196 3bh0_A DNAB-like replicative h 86.2 0.95 3.2E-05 41.8 5.7 53 53-115 65-117 (315)
197 3nbx_X ATPase RAVA; AAA+ ATPas 86.1 0.84 2.9E-05 45.1 5.5 37 39-75 24-60 (500)
198 1tue_A Replication protein E1; 85.5 1.1 3.8E-05 38.1 5.2 47 27-76 28-78 (212)
199 3b85_A Phosphate starvation-in 85.5 0.85 2.9E-05 39.2 4.6 33 43-75 9-41 (208)
200 3b9p_A CG5977-PA, isoform A; A 85.4 0.48 1.6E-05 43.3 3.2 59 16-77 16-75 (297)
201 1vec_A ATP-dependent RNA helic 84.9 5.8 0.0002 33.5 9.9 95 300-410 51-152 (206)
202 2bjv_A PSP operon transcriptio 84.8 0.92 3.2E-05 40.6 4.8 23 54-76 27-49 (265)
203 2r62_A Cell division protease 84.8 0.33 1.1E-05 43.7 1.8 59 16-78 6-66 (268)
204 1ofh_A ATP-dependent HSL prote 84.6 1.9 6.5E-05 39.4 7.0 23 56-78 50-72 (310)
205 2r44_A Uncharacterized protein 84.5 0.65 2.2E-05 43.2 3.7 26 51-76 41-66 (331)
206 1p9r_A General secretion pathw 84.4 1.2 4E-05 42.9 5.5 32 44-75 153-186 (418)
207 2oap_1 GSPE-2, type II secreti 84.4 0.87 3E-05 45.2 4.7 32 42-73 245-277 (511)
208 3ber_A Probable ATP-dependent 84.2 4.6 0.00016 35.6 9.1 96 300-412 91-194 (249)
209 1u94_A RECA protein, recombina 83.9 1 3.4E-05 42.4 4.7 39 55-102 62-100 (356)
210 2r8r_A Sensor protein; KDPD, P 83.9 1.2 4E-05 38.6 4.7 26 58-83 8-33 (228)
211 2qmh_A HPR kinase/phosphorylas 83.6 0.55 1.9E-05 39.7 2.5 23 55-77 33-55 (205)
212 2oxc_A Probable ATP-dependent 83.6 4.3 0.00015 35.2 8.6 95 299-410 71-172 (230)
213 3bor_A Human initiation factor 83.5 3.8 0.00013 35.8 8.1 96 301-412 79-181 (237)
214 3bgw_A DNAB-like replicative h 83.4 1.4 4.9E-05 42.8 5.8 41 53-102 194-234 (444)
215 2zr9_A Protein RECA, recombina 83.4 1 3.5E-05 42.3 4.5 39 55-102 60-98 (349)
216 2x8a_A Nuclear valosin-contain 83.2 0.35 1.2E-05 43.8 1.2 59 16-77 5-65 (274)
217 1kgd_A CASK, peripheral plasma 83.2 0.72 2.5E-05 38.5 3.1 21 55-75 4-24 (180)
218 3a8t_A Adenylate isopentenyltr 83.1 0.65 2.2E-05 43.0 2.9 21 57-77 41-61 (339)
219 1qde_A EIF4A, translation init 83.0 4.1 0.00014 35.1 8.1 96 299-412 61-163 (224)
220 3cmw_A Protein RECA, recombina 83.0 0.85 2.9E-05 51.7 4.4 92 56-183 1431-1523(1706)
221 3foz_A TRNA delta(2)-isopenten 82.7 0.77 2.6E-05 41.9 3.2 21 58-78 12-32 (316)
222 3exa_A TRNA delta(2)-isopenten 82.7 0.68 2.3E-05 42.3 2.9 20 58-77 5-24 (322)
223 2cvh_A DNA repair and recombin 82.5 1.2 4.2E-05 38.2 4.5 24 55-78 19-42 (220)
224 4fcw_A Chaperone protein CLPB; 82.3 1.2 4.2E-05 40.8 4.7 23 57-79 48-70 (311)
225 2eyu_A Twitching motility prot 82.3 0.66 2.3E-05 41.5 2.7 23 53-75 22-44 (261)
226 2gxq_A Heat resistant RNA depe 82.2 12 0.00041 31.4 10.8 95 299-412 48-152 (207)
227 1w36_B RECB, exodeoxyribonucle 82.0 3.2 0.00011 46.0 8.5 61 58-118 18-81 (1180)
228 2c9o_A RUVB-like 1; hexameric 81.9 1.6 5.4E-05 42.7 5.4 24 56-79 63-86 (456)
229 1xp8_A RECA protein, recombina 81.9 1.3 4.3E-05 41.9 4.5 39 56-103 74-112 (366)
230 1u0j_A DNA replication protein 81.8 1.3 4.4E-05 39.5 4.2 47 27-77 73-125 (267)
231 3t15_A Ribulose bisphosphate c 81.7 0.83 2.8E-05 41.7 3.2 23 57-79 37-59 (293)
232 1ojl_A Transcriptional regulat 81.7 1 3.6E-05 41.3 3.8 22 55-76 24-45 (304)
233 2px0_A Flagellar biosynthesis 81.7 1.5 5.1E-05 40.0 4.9 25 56-80 105-129 (296)
234 3vaa_A Shikimate kinase, SK; s 81.6 1.1 3.6E-05 38.2 3.6 23 55-77 24-46 (199)
235 2ius_A DNA translocase FTSK; n 81.2 2.3 7.9E-05 42.0 6.2 28 56-83 167-194 (512)
236 3trf_A Shikimate kinase, SK; a 81.2 1.1 3.8E-05 37.4 3.6 23 56-78 5-27 (185)
237 2gza_A Type IV secretion syste 81.0 0.98 3.3E-05 42.6 3.5 22 53-74 172-193 (361)
238 3iij_A Coilin-interacting nucl 80.8 1 3.5E-05 37.4 3.2 24 54-77 9-32 (180)
239 3tau_A Guanylate kinase, GMP k 80.6 1 3.4E-05 38.7 3.1 22 55-76 7-28 (208)
240 1oyw_A RECQ helicase, ATP-depe 80.3 2.8 9.5E-05 41.8 6.7 59 319-394 65-123 (523)
241 3iuy_A Probable ATP-dependent 80.2 7.3 0.00025 33.5 8.8 77 318-412 93-175 (228)
242 3uk6_A RUVB-like 2; hexameric 80.2 1 3.5E-05 42.5 3.4 23 57-79 71-93 (368)
243 3ly5_A ATP-dependent RNA helic 79.8 11 0.00038 33.4 10.0 77 318-411 125-208 (262)
244 1lv7_A FTSH; alpha/beta domain 79.7 1.2 4E-05 39.7 3.4 60 15-77 6-66 (257)
245 3ney_A 55 kDa erythrocyte memb 79.5 1.2 4E-05 37.8 3.1 23 54-76 17-39 (197)
246 2ze6_A Isopentenyl transferase 79.5 1.2 4.2E-05 39.5 3.4 21 58-78 3-23 (253)
247 2v1x_A ATP-dependent DNA helic 79.5 2.9 9.9E-05 42.4 6.6 59 319-394 84-144 (591)
248 3nwn_A Kinesin-like protein KI 79.5 1.3 4.4E-05 41.5 3.7 24 50-73 97-122 (359)
249 1lvg_A Guanylate kinase, GMP k 79.5 1.2 4E-05 37.9 3.2 22 55-76 3-24 (198)
250 2iut_A DNA translocase FTSK; n 79.2 2.9 0.0001 41.7 6.2 29 57-85 215-243 (574)
251 2qor_A Guanylate kinase; phosp 78.9 1.4 4.9E-05 37.5 3.5 24 53-76 9-32 (204)
252 3fmo_B ATP-dependent RNA helic 78.5 5 0.00017 36.6 7.3 95 299-412 141-243 (300)
253 3crm_A TRNA delta(2)-isopenten 78.4 1.3 4.4E-05 40.8 3.2 21 58-78 7-27 (323)
254 1ex7_A Guanylate kinase; subst 78.1 1.7 5.8E-05 36.5 3.7 18 57-74 2-19 (186)
255 1um8_A ATP-dependent CLP prote 78.1 1.5 5.2E-05 41.6 3.8 22 56-77 72-93 (376)
256 1bg2_A Kinesin; motor protein, 78.0 1.6 5.6E-05 40.2 3.8 23 51-73 71-95 (325)
257 2j41_A Guanylate kinase; GMP, 78.0 1.3 4.5E-05 37.7 3.1 22 54-75 4-25 (207)
258 1qhx_A CPT, protein (chloramph 78.0 1.4 4.7E-05 36.5 3.1 21 56-76 3-23 (178)
259 1y63_A LMAJ004144AAA protein; 77.7 1.6 5.5E-05 36.5 3.5 23 55-77 9-31 (184)
260 1cr0_A DNA primase/helicase; R 77.6 2.4 8.1E-05 38.6 4.9 28 53-80 32-59 (296)
261 1vma_A Cell division protein F 77.4 2.3 7.8E-05 39.0 4.6 23 58-80 106-128 (306)
262 3dc4_A Kinesin-like protein NO 77.2 1.6 5.4E-05 40.7 3.5 21 53-73 90-112 (344)
263 3d3q_A TRNA delta(2)-isopenten 77.0 1.5 5.2E-05 40.7 3.3 21 58-78 9-29 (340)
264 3eph_A TRNA isopentenyltransfe 76.9 1.5 5.1E-05 41.7 3.3 22 58-79 4-25 (409)
265 1goj_A Kinesin, kinesin heavy 76.8 1.9 6.3E-05 40.4 3.9 22 52-73 75-98 (355)
266 2ewv_A Twitching motility prot 76.7 1.2 4E-05 42.3 2.6 23 54-76 134-156 (372)
267 2vvg_A Kinesin-2; motor protei 76.5 1.9 6.5E-05 40.2 3.8 32 42-73 66-107 (350)
268 1kag_A SKI, shikimate kinase I 76.5 1.7 5.9E-05 35.7 3.3 21 56-76 4-24 (173)
269 3fe2_A Probable ATP-dependent 76.5 14 0.00048 32.1 9.5 98 298-412 75-184 (242)
270 3lw7_A Adenylate kinase relate 76.5 1.2 3.9E-05 36.7 2.2 19 58-76 3-21 (179)
271 1zp6_A Hypothetical protein AT 76.3 1.1 3.9E-05 37.5 2.2 22 54-75 7-28 (191)
272 3jvv_A Twitching mobility prot 76.3 1.3 4.6E-05 41.5 2.8 21 55-75 122-142 (356)
273 1t5c_A CENP-E protein, centrom 76.3 1.8 6.3E-05 40.3 3.7 23 51-73 71-95 (349)
274 2y65_A Kinesin, kinesin heavy 76.3 1.9 6.6E-05 40.4 3.8 32 42-73 61-102 (365)
275 3t0q_A AGR253WP; kinesin, alph 76.2 1.9 6.5E-05 40.3 3.8 26 49-74 77-104 (349)
276 3b6u_A Kinesin-like protein KI 76.2 1.8 6.3E-05 40.7 3.7 22 52-73 96-119 (372)
277 2h58_A Kinesin-like protein KI 76.2 2 6.8E-05 39.8 3.9 25 49-73 72-98 (330)
278 3tr0_A Guanylate kinase, GMP k 76.1 1.6 5.6E-05 37.0 3.1 21 55-75 6-26 (205)
279 4a14_A Kinesin, kinesin-like p 76.1 2 6.8E-05 40.1 3.9 22 52-73 78-101 (344)
280 3lre_A Kinesin-like protein KI 76.0 2 6.8E-05 40.2 3.9 32 42-73 82-123 (355)
281 2pt7_A CAG-ALFA; ATPase, prote 76.0 1.2 4E-05 41.5 2.3 21 53-73 168-188 (330)
282 1kht_A Adenylate kinase; phosp 75.9 1.9 6.6E-05 36.0 3.5 22 56-77 3-24 (192)
283 1v8k_A Kinesin-like protein KI 75.9 1.8 6.2E-05 41.2 3.6 23 51-73 148-172 (410)
284 1v5w_A DMC1, meiotic recombina 75.9 1.8 6.1E-05 40.5 3.5 45 56-103 122-166 (343)
285 1sxj_A Activator 1 95 kDa subu 75.7 3.6 0.00012 40.9 5.9 63 15-79 33-100 (516)
286 4etp_A Kinesin-like protein KA 75.7 1.9 6.5E-05 41.1 3.7 25 49-73 132-158 (403)
287 2r2a_A Uncharacterized protein 75.7 1.8 6.3E-05 36.7 3.3 22 58-79 7-28 (199)
288 2zfi_A Kinesin-like protein KI 75.6 2.1 7E-05 40.3 3.8 23 51-73 83-107 (366)
289 3gbj_A KIF13B protein; kinesin 75.6 1.9 6.7E-05 40.3 3.7 24 50-73 85-110 (354)
290 2chq_A Replication factor C sm 75.5 5.4 0.00018 36.4 6.8 51 15-79 11-61 (319)
291 3a00_A Guanylate kinase, GMP k 75.5 1.9 6.6E-05 36.1 3.3 19 57-75 2-20 (186)
292 2nr8_A Kinesin-like protein KI 75.5 2 6.8E-05 40.2 3.7 24 50-73 96-121 (358)
293 1f9v_A Kinesin-like protein KA 75.4 1.9 6.6E-05 40.2 3.6 24 50-73 77-102 (347)
294 1zu4_A FTSY; GTPase, signal re 75.4 2.7 9.4E-05 38.7 4.6 23 58-80 107-129 (320)
295 1sky_E F1-ATPase, F1-ATP synth 75.3 6.9 0.00024 38.0 7.5 34 48-81 140-176 (473)
296 1z6g_A Guanylate kinase; struc 75.2 2 6.8E-05 37.1 3.4 23 53-75 20-42 (218)
297 2yvu_A Probable adenylyl-sulfa 74.9 3.2 0.00011 34.6 4.6 24 55-78 12-35 (186)
298 1x88_A Kinesin-like protein KI 74.6 1.9 6.6E-05 40.4 3.4 23 51-73 82-106 (359)
299 2heh_A KIF2C protein; kinesin, 74.5 2.1 7.1E-05 40.5 3.6 23 51-73 128-152 (387)
300 2pl3_A Probable ATP-dependent 74.3 9.6 0.00033 33.0 7.8 77 317-411 95-178 (236)
301 1wp9_A ATP-dependent RNA helic 74.3 10 0.00035 36.8 8.9 95 299-412 33-133 (494)
302 3kb2_A SPBC2 prophage-derived 74.2 2.3 7.7E-05 34.8 3.4 20 58-77 3-22 (173)
303 2wbe_C Bipolar kinesin KRP-130 73.9 2.1 7.3E-05 40.3 3.5 22 52-73 95-118 (373)
304 4dzz_A Plasmid partitioning pr 73.8 7.8 0.00027 32.6 7.0 30 62-100 8-37 (206)
305 3u06_A Protein claret segregat 73.6 2.2 7.5E-05 40.8 3.5 25 49-73 130-156 (412)
306 1hqc_A RUVB; extended AAA-ATPa 73.6 1.8 6.1E-05 39.9 2.9 23 56-78 38-60 (324)
307 3cob_A Kinesin heavy chain-lik 73.4 1.9 6.6E-05 40.5 3.0 25 49-73 71-97 (369)
308 1ly1_A Polynucleotide kinase; 73.3 2 6.9E-05 35.5 2.9 20 58-77 4-23 (181)
309 1rj9_A FTSY, signal recognitio 73.3 3.8 0.00013 37.5 4.9 22 56-77 102-123 (304)
310 1ixz_A ATP-dependent metallopr 73.2 1.9 6.4E-05 38.2 2.8 59 15-77 10-70 (254)
311 2owm_A Nckin3-434, related to 73.0 2.6 8.8E-05 40.8 3.9 22 52-73 131-154 (443)
312 3bfn_A Kinesin-like protein KI 73.0 2.1 7E-05 40.5 3.1 32 42-73 75-116 (388)
313 1xti_A Probable ATP-dependent 72.5 13 0.00045 34.9 8.9 98 300-412 56-160 (391)
314 3b9q_A Chloroplast SRP recepto 72.4 3.6 0.00012 37.6 4.6 21 57-77 101-121 (302)
315 3cm0_A Adenylate kinase; ATP-b 72.3 1.9 6.6E-05 35.9 2.6 23 55-77 3-25 (186)
316 1gku_B Reverse gyrase, TOP-RG; 72.3 9.6 0.00033 41.6 8.6 97 299-412 81-183 (1054)
317 2rep_A Kinesin-like protein KI 72.2 2.5 8.5E-05 39.8 3.5 32 42-73 93-133 (376)
318 4eun_A Thermoresistant glucoki 72.2 2.4 8E-05 36.0 3.1 23 55-77 28-50 (200)
319 3cmw_A Protein RECA, recombina 72.1 4.6 0.00016 45.9 6.1 41 55-104 33-73 (1706)
320 2v3c_C SRP54, signal recogniti 72.0 3 0.0001 40.3 4.1 26 58-83 101-126 (432)
321 4gp7_A Metallophosphoesterase; 71.9 1.6 5.4E-05 36.0 1.9 21 55-75 8-28 (171)
322 1ry6_A Internal kinesin; kines 71.7 2.5 8.6E-05 39.6 3.4 19 55-73 82-102 (360)
323 1knq_A Gluconate kinase; ALFA/ 71.6 2 7E-05 35.3 2.5 21 56-76 8-28 (175)
324 1wrb_A DJVLGB; RNA helicase, D 71.6 12 0.0004 32.8 7.8 77 319-412 100-182 (253)
325 1via_A Shikimate kinase; struc 71.5 3.1 0.00011 34.2 3.7 21 58-78 6-26 (175)
326 1zuh_A Shikimate kinase; alpha 71.4 2.9 9.9E-05 34.1 3.4 22 57-78 8-29 (168)
327 2c95_A Adenylate kinase 1; tra 71.3 3.3 0.00011 34.7 3.9 25 54-78 7-31 (196)
328 3cf2_A TER ATPase, transitiona 70.8 1.6 5.3E-05 45.8 1.9 61 16-79 472-534 (806)
329 1g8p_A Magnesium-chelatase 38 70.7 1.9 6.6E-05 40.2 2.4 22 56-77 45-66 (350)
330 3nwj_A ATSK2; P loop, shikimat 70.7 3 0.0001 36.9 3.5 23 55-77 47-69 (250)
331 1znw_A Guanylate kinase, GMP k 70.7 2.7 9.2E-05 35.9 3.2 24 52-75 16-39 (207)
332 1q57_A DNA primase/helicase; d 70.6 2.9 0.0001 41.4 3.8 52 53-113 239-290 (503)
333 3fb4_A Adenylate kinase; psych 70.5 2.8 9.6E-05 35.9 3.3 21 58-78 2-22 (216)
334 1in4_A RUVB, holliday junction 70.5 2.6 8.8E-05 39.2 3.2 22 57-78 52-73 (334)
335 4akg_A Glutathione S-transfera 70.5 5.6 0.00019 47.6 6.5 49 27-77 892-944 (2695)
336 3bs4_A Uncharacterized protein 70.3 3.5 0.00012 36.6 3.8 52 55-116 20-71 (260)
337 1xjc_A MOBB protein homolog; s 70.2 5.8 0.0002 32.6 4.9 19 58-76 6-24 (169)
338 3pxg_A Negative regulator of g 70.2 3.9 0.00013 40.1 4.6 26 55-80 200-225 (468)
339 3cmu_A Protein RECA, recombina 70.0 4 0.00014 47.2 5.0 47 54-110 1079-1125(2050)
340 3ice_A Transcription terminati 69.9 11 0.00038 35.6 7.2 36 42-77 157-195 (422)
341 1tev_A UMP-CMP kinase; ploop, 69.7 2.8 9.6E-05 35.1 3.1 21 57-77 4-24 (196)
342 3u4q_B ATP-dependent helicase/ 69.6 4 0.00014 45.2 5.0 40 59-104 4-43 (1166)
343 3uie_A Adenylyl-sulfate kinase 69.2 2.5 8.6E-05 35.8 2.6 24 54-77 23-46 (200)
344 1g41_A Heat shock protein HSLU 69.2 3.1 0.00011 40.2 3.5 22 56-77 50-71 (444)
345 1iy2_A ATP-dependent metallopr 69.1 2.6 9.1E-05 37.9 2.9 57 16-76 35-93 (278)
346 2iyv_A Shikimate kinase, SK; t 69.0 4 0.00014 33.8 3.9 22 57-78 3-24 (184)
347 3sr0_A Adenylate kinase; phosp 68.9 3.5 0.00012 35.2 3.5 22 58-79 2-23 (206)
348 3t61_A Gluconokinase; PSI-biol 68.6 3.5 0.00012 34.9 3.4 21 57-77 19-39 (202)
349 1e6c_A Shikimate kinase; phosp 68.4 4 0.00014 33.3 3.7 22 57-78 3-24 (173)
350 3f9v_A Minichromosome maintena 68.4 2.6 8.8E-05 42.8 2.9 16 58-73 329-344 (595)
351 1s96_A Guanylate kinase, GMP k 68.3 3.2 0.00011 35.9 3.1 23 53-75 13-35 (219)
352 1aky_A Adenylate kinase; ATP:A 68.2 3.8 0.00013 35.2 3.7 23 56-78 4-26 (220)
353 2v54_A DTMP kinase, thymidylat 68.0 3.1 0.0001 35.2 2.9 23 55-77 3-25 (204)
354 3dl0_A Adenylate kinase; phosp 67.9 3.2 0.00011 35.5 3.1 20 58-77 2-21 (216)
355 2rhm_A Putative kinase; P-loop 67.8 3.5 0.00012 34.4 3.3 22 56-77 5-26 (193)
356 2og2_A Putative signal recogni 67.8 5 0.00017 37.6 4.5 21 57-77 158-178 (359)
357 1s2m_A Putative ATP-dependent 67.8 24 0.00083 33.2 9.7 96 300-412 69-171 (400)
358 3lnc_A Guanylate kinase, GMP k 67.4 2.3 7.9E-05 37.0 2.1 23 53-75 24-46 (231)
359 3tlx_A Adenylate kinase 2; str 67.4 4.6 0.00016 35.4 4.1 23 56-78 29-51 (243)
360 1nlf_A Regulatory protein REPA 67.4 3.2 0.00011 37.4 3.1 28 52-79 26-53 (279)
361 1zak_A Adenylate kinase; ATP:A 67.3 4.2 0.00014 35.0 3.7 23 56-78 5-27 (222)
362 3e70_C DPA, signal recognition 67.3 5.3 0.00018 36.9 4.5 22 56-77 129-150 (328)
363 2vhj_A Ntpase P4, P4; non- hyd 67.3 2.6 9E-05 38.7 2.4 26 54-79 121-146 (331)
364 2cdn_A Adenylate kinase; phosp 67.2 3.6 0.00012 34.8 3.2 22 57-78 21-42 (201)
365 1m7g_A Adenylylsulfate kinase; 67.2 4.9 0.00017 34.3 4.1 34 43-77 13-46 (211)
366 3umf_A Adenylate kinase; rossm 67.0 3.9 0.00013 35.2 3.4 25 55-79 28-52 (217)
367 1ak2_A Adenylate kinase isoenz 66.6 4.2 0.00014 35.4 3.6 25 55-79 15-39 (233)
368 1j8m_F SRP54, signal recogniti 66.4 5.6 0.00019 36.2 4.5 23 58-80 100-122 (297)
369 3k1j_A LON protease, ATP-depen 66.4 4.9 0.00017 40.9 4.5 26 51-76 55-80 (604)
370 1gvn_B Zeta; postsegregational 66.4 3.4 0.00012 37.4 3.0 20 57-76 34-53 (287)
371 1nks_A Adenylate kinase; therm 66.4 3.8 0.00013 34.1 3.2 20 58-77 3-22 (194)
372 2bdt_A BH3686; alpha-beta prot 66.3 3.5 0.00012 34.4 2.9 19 58-76 4-22 (189)
373 1c9k_A COBU, adenosylcobinamid 66.3 2.9 9.9E-05 34.8 2.3 45 59-116 2-46 (180)
374 4a74_A DNA repair and recombin 66.3 2.5 8.6E-05 36.5 2.1 24 55-78 24-47 (231)
375 1ls1_A Signal recognition part 66.2 5.9 0.0002 36.0 4.6 25 56-80 98-122 (295)
376 2v9p_A Replication protein E1; 66.1 3.4 0.00012 37.7 3.0 21 55-75 125-145 (305)
377 2ce7_A Cell division protein F 65.9 3.7 0.00013 40.2 3.4 58 16-78 11-71 (476)
378 1f2t_A RAD50 ABC-ATPase; DNA d 65.9 4.1 0.00014 32.6 3.1 16 58-73 25-40 (149)
379 1qf9_A UMP/CMP kinase, protein 65.8 4.1 0.00014 34.0 3.3 20 58-77 8-27 (194)
380 2bwj_A Adenylate kinase 5; pho 65.7 4.1 0.00014 34.2 3.3 24 55-78 11-34 (199)
381 4anj_A Unconventional myosin-V 65.7 7.3 0.00025 42.0 5.8 64 14-78 94-166 (1052)
382 1zd8_A GTP:AMP phosphotransfer 65.5 4 0.00014 35.3 3.2 22 56-77 7-28 (227)
383 1ye8_A Protein THEP1, hypothet 65.5 3.8 0.00013 34.0 2.9 18 58-75 2-19 (178)
384 2plr_A DTMP kinase, probable t 65.3 3.9 0.00013 34.7 3.1 24 55-78 3-26 (213)
385 3c8u_A Fructokinase; YP_612366 65.3 3.1 0.0001 35.5 2.4 20 55-74 21-40 (208)
386 2hjv_A ATP-dependent RNA helic 65.2 51 0.0017 26.3 10.7 74 93-178 35-112 (163)
387 1hv8_A Putative ATP-dependent 64.7 25 0.00087 32.4 9.0 97 298-412 53-155 (367)
388 1fuu_A Yeast initiation factor 64.6 17 0.00058 34.1 7.8 94 301-412 70-170 (394)
389 2db3_A ATP-dependent RNA helic 64.5 17 0.00057 35.0 7.8 76 319-411 129-210 (434)
390 2i3b_A HCR-ntpase, human cance 64.3 4.8 0.00016 33.8 3.4 22 56-77 1-22 (189)
391 2pez_A Bifunctional 3'-phospho 64.1 3.7 0.00013 33.9 2.6 23 55-77 4-26 (179)
392 1e4v_A Adenylate kinase; trans 63.9 4.3 0.00015 34.7 3.1 21 58-78 2-22 (214)
393 2qt1_A Nicotinamide riboside k 63.9 1.9 6.6E-05 36.7 0.8 21 55-75 20-40 (207)
394 2rb4_A ATP-dependent RNA helic 63.8 57 0.0019 26.4 11.1 71 93-175 34-108 (175)
395 3a4m_A L-seryl-tRNA(SEC) kinas 63.8 8.3 0.00028 34.2 5.1 21 57-77 5-25 (260)
396 1cke_A CK, MSSA, protein (cyti 63.8 4.8 0.00016 34.7 3.4 21 57-77 6-26 (227)
397 1rz3_A Hypothetical protein rb 63.8 7.8 0.00027 32.7 4.7 20 57-76 23-42 (201)
398 3be4_A Adenylate kinase; malar 63.6 4.9 0.00017 34.5 3.4 23 56-78 5-27 (217)
399 2p6n_A ATP-dependent RNA helic 63.3 63 0.0022 26.7 11.8 72 93-176 54-129 (191)
400 2pt5_A Shikimate kinase, SK; a 63.1 5.3 0.00018 32.4 3.4 21 58-78 2-22 (168)
401 2ffh_A Protein (FFH); SRP54, s 63.1 6.7 0.00023 37.7 4.5 23 58-80 100-122 (425)
402 1lkx_A Myosin IE heavy chain; 63.1 6.8 0.00023 40.2 4.7 64 14-78 45-116 (697)
403 2j0s_A ATP-dependent RNA helic 63.1 34 0.0012 32.3 9.7 94 300-410 85-185 (410)
404 2wwf_A Thymidilate kinase, put 63.1 5.1 0.00018 34.0 3.4 23 55-77 9-31 (212)
405 3vkg_A Dynein heavy chain, cyt 63.0 8.8 0.0003 46.6 6.2 62 14-77 859-927 (3245)
406 3m6a_A ATP-dependent protease 62.9 4.8 0.00017 40.3 3.6 23 55-77 107-129 (543)
407 3kta_A Chromosome segregation 62.8 4.5 0.00015 33.5 2.9 16 58-73 28-43 (182)
408 1tf7_A KAIC; homohexamer, hexa 62.7 6.5 0.00022 39.2 4.5 41 53-102 278-318 (525)
409 1w9i_A Myosin II heavy chain; 62.5 7.6 0.00026 40.3 5.0 63 15-78 124-194 (770)
410 4db1_A Myosin-7; S1DC, cardiac 62.5 7.5 0.00026 40.5 5.0 62 15-77 123-192 (783)
411 1ukz_A Uridylate kinase; trans 62.5 5.1 0.00017 33.8 3.3 20 58-77 17-36 (203)
412 2yhs_A FTSY, cell division pro 62.4 7.1 0.00024 38.2 4.6 20 58-77 295-314 (503)
413 2jaq_A Deoxyguanosine kinase; 62.4 5.3 0.00018 33.6 3.4 20 58-77 2-21 (205)
414 3asz_A Uridine kinase; cytidin 62.3 3.8 0.00013 34.9 2.5 20 56-75 6-25 (211)
415 2v26_A Myosin VI; calmodulin-b 62.2 9.7 0.00033 39.7 5.8 63 15-78 91-162 (784)
416 2f1r_A Molybdopterin-guanine d 62.0 3.1 0.00011 34.3 1.7 19 58-76 4-22 (171)
417 1nn5_A Similar to deoxythymidy 61.9 5.6 0.00019 33.8 3.5 24 55-78 8-31 (215)
418 3pxi_A Negative regulator of g 61.8 6.2 0.00021 41.4 4.4 25 55-79 200-224 (758)
419 1w7j_A Myosin VA; motor protei 61.3 8.2 0.00028 40.3 5.0 63 15-78 108-178 (795)
420 1qvr_A CLPB protein; coiled co 61.3 6.4 0.00022 41.9 4.4 23 58-80 590-612 (854)
421 2vli_A Antibiotic resistance p 61.1 4.7 0.00016 33.3 2.7 21 56-76 5-25 (183)
422 2pbr_A DTMP kinase, thymidylat 61.0 5.9 0.0002 33.0 3.4 21 58-78 2-22 (195)
423 2xb4_A Adenylate kinase; ATP-b 60.9 5.9 0.0002 34.2 3.4 21 58-78 2-22 (223)
424 4akg_A Glutathione S-transfera 60.9 3.4 0.00012 49.4 2.3 21 53-73 1264-1284(2695)
425 3eaq_A Heat resistant RNA depe 60.7 75 0.0026 26.7 10.9 71 93-175 31-105 (212)
426 1jjv_A Dephospho-COA kinase; P 60.6 5 0.00017 34.0 2.9 19 58-76 4-22 (206)
427 2l82_A Designed protein OR32; 60.4 26 0.00088 25.5 6.0 50 322-388 5-54 (162)
428 3qf7_A RAD50; ABC-ATPase, ATPa 60.3 6 0.00021 37.2 3.6 18 58-75 25-42 (365)
429 1g8x_A Myosin II heavy chain f 60.2 9.8 0.00033 41.0 5.5 62 15-77 124-193 (1010)
430 2if2_A Dephospho-COA kinase; a 59.7 5 0.00017 33.9 2.7 19 58-76 3-21 (204)
431 4e22_A Cytidylate kinase; P-lo 59.6 5.6 0.00019 35.1 3.1 23 55-77 26-48 (252)
432 3tqf_A HPR(Ser) kinase; transf 59.1 5.1 0.00017 33.0 2.4 23 55-77 15-37 (181)
433 2z0h_A DTMP kinase, thymidylat 58.8 6.9 0.00023 32.7 3.5 19 59-77 3-21 (197)
434 1uf9_A TT1252 protein; P-loop, 58.7 5.3 0.00018 33.6 2.7 19 58-76 10-28 (203)
435 3tif_A Uncharacterized ABC tra 58.7 4.6 0.00016 35.3 2.3 18 55-72 30-47 (235)
436 1kk8_A Myosin heavy chain, str 58.6 8.1 0.00028 40.6 4.5 62 15-77 121-190 (837)
437 3i5x_A ATP-dependent RNA helic 58.6 1.3E+02 0.0044 29.8 13.4 76 93-177 339-418 (563)
438 2j37_W Signal recognition part 58.1 9.4 0.00032 37.6 4.6 35 58-101 103-137 (504)
439 3dkp_A Probable ATP-dependent 57.8 16 0.00055 31.7 5.9 98 299-412 76-183 (245)
440 2xxa_A Signal recognition part 57.8 11 0.00038 36.3 5.0 23 58-80 102-124 (433)
441 2ycu_A Non muscle myosin 2C, a 57.8 9.7 0.00033 41.1 5.0 62 15-77 98-167 (995)
442 2dfs_A Myosin-5A; myosin-V, in 57.6 9.6 0.00033 41.5 5.0 63 15-78 108-178 (1080)
443 2dhr_A FTSH; AAA+ protein, hex 57.6 5.4 0.00019 39.3 2.8 57 16-77 26-85 (499)
444 3auy_A DNA double-strand break 57.6 6.7 0.00023 37.0 3.4 17 58-74 27-43 (371)
445 2grj_A Dephospho-COA kinase; T 57.4 7.3 0.00025 32.7 3.3 20 59-78 15-34 (192)
446 2p5t_B PEZT; postsegregational 57.3 4.6 0.00016 35.7 2.1 21 57-77 33-53 (253)
447 2bbw_A Adenylate kinase 4, AK4 57.0 6.2 0.00021 34.6 2.9 22 56-77 27-48 (246)
448 3tbk_A RIG-I helicase domain; 56.9 14 0.00047 36.8 5.9 95 299-410 29-133 (555)
449 2cbz_A Multidrug resistance-as 56.9 5.2 0.00018 35.0 2.3 19 55-73 30-48 (237)
450 3nh6_A ATP-binding cassette SU 56.4 4.4 0.00015 37.0 1.8 19 55-73 79-97 (306)
451 3zq6_A Putative arsenical pump 56.3 11 0.00039 34.6 4.7 33 59-100 17-49 (324)
452 1fuk_A Eukaryotic initiation f 56.3 75 0.0025 25.3 10.9 73 93-177 30-106 (165)
453 1sgw_A Putative ABC transporte 56.2 5.9 0.0002 34.0 2.6 19 55-73 34-52 (214)
454 1np6_A Molybdopterin-guanine d 56.1 15 0.0005 30.3 4.8 18 58-75 8-25 (174)
455 1r6b_X CLPA protein; AAA+, N-t 56.0 6.4 0.00022 41.3 3.3 21 58-78 490-510 (758)
456 4h1g_A Maltose binding protein 55.7 7.4 0.00025 40.4 3.7 25 49-73 454-480 (715)
457 2woo_A ATPase GET3; tail-ancho 55.7 12 0.0004 34.6 4.7 33 58-99 21-53 (329)
458 1byi_A Dethiobiotin synthase; 55.6 14 0.0005 31.5 5.1 33 60-101 6-38 (224)
459 1ypw_A Transitional endoplasmi 55.6 5.2 0.00018 42.2 2.5 22 55-76 237-258 (806)
460 1r6b_X CLPA protein; AAA+, N-t 55.6 7.3 0.00025 40.9 3.6 24 56-79 207-230 (758)
461 1htw_A HI0065; nucleotide-bind 55.0 6.4 0.00022 31.8 2.5 20 54-73 31-50 (158)
462 1ihu_A Arsenical pump-driving 54.9 12 0.00042 37.8 5.1 27 57-83 9-35 (589)
463 2qen_A Walker-type ATPase; unk 54.7 12 0.00041 34.5 4.7 34 43-76 17-51 (350)
464 4a2q_A RIG-I, retinoic acid in 54.6 25 0.00084 37.1 7.5 95 299-410 273-377 (797)
465 1odf_A YGR205W, hypothetical 3 54.5 8.5 0.00029 34.8 3.4 18 58-75 33-50 (290)
466 3l0o_A Transcription terminati 54.2 25 0.00087 33.2 6.5 34 42-75 158-194 (427)
467 1q0u_A Bstdead; DEAD protein, 54.2 14 0.00048 31.5 4.7 97 301-410 53-156 (219)
468 3ug7_A Arsenical pump-driving 54.1 13 0.00046 34.5 4.9 33 59-100 29-61 (349)
469 1t5i_A C_terminal domain of A 54.1 82 0.0028 25.4 9.3 73 93-177 31-107 (172)
470 2ff7_A Alpha-hemolysin translo 53.9 6 0.0002 34.8 2.3 19 55-73 34-52 (247)
471 2ghi_A Transport protein; mult 53.8 6.2 0.00021 35.1 2.3 19 55-73 45-63 (260)
472 3qks_A DNA double-strand break 53.7 8.4 0.00029 32.7 3.1 17 58-74 25-41 (203)
473 1vht_A Dephospho-COA kinase; s 53.6 7.6 0.00026 33.2 2.9 19 58-76 6-24 (218)
474 3r20_A Cytidylate kinase; stru 53.5 9.5 0.00033 33.2 3.4 21 57-77 10-30 (233)
475 3gfo_A Cobalt import ATP-bindi 53.5 6 0.0002 35.5 2.2 19 55-73 33-51 (275)
476 2pze_A Cystic fibrosis transme 53.1 6.3 0.00022 34.2 2.3 19 55-73 33-51 (229)
477 2zu0_C Probable ATP-dependent 53.0 7.7 0.00026 34.6 2.9 19 55-73 45-63 (267)
478 4a2p_A RIG-I, retinoic acid in 53.0 21 0.00071 35.5 6.4 97 299-412 32-138 (556)
479 2i4i_A ATP-dependent RNA helic 52.8 36 0.0012 32.2 7.9 75 320-411 102-182 (417)
480 3vkg_A Dynein heavy chain, cyt 52.7 5.8 0.0002 48.1 2.4 25 49-73 1296-1321(3245)
481 3p32_A Probable GTPase RV1496/ 52.5 14 0.00049 34.4 4.8 23 58-80 81-103 (355)
482 3b6e_A Interferon-induced heli 52.5 14 0.00048 31.2 4.4 58 319-394 82-140 (216)
483 2d2e_A SUFC protein; ABC-ATPas 52.2 7.9 0.00027 34.1 2.8 19 55-73 28-46 (250)
484 1uj2_A Uridine-cytidine kinase 52.2 8.3 0.00028 33.9 2.9 20 58-77 24-43 (252)
485 1g6h_A High-affinity branched- 52.2 6.2 0.00021 35.0 2.1 19 55-73 32-50 (257)
486 1svm_A Large T antigen; AAA+ f 52.1 8.3 0.00028 36.4 3.0 23 55-77 168-190 (377)
487 1ypw_A Transitional endoplasmi 52.0 3 0.0001 44.0 -0.0 60 17-78 473-533 (806)
488 1gtv_A TMK, thymidylate kinase 52.0 5.5 0.00019 33.9 1.7 19 59-77 3-21 (214)
489 3sqw_A ATP-dependent RNA helic 51.9 1.9E+02 0.0065 28.7 13.7 77 93-178 288-368 (579)
490 4g1u_C Hemin import ATP-bindin 51.9 6.6 0.00023 35.0 2.2 19 55-73 36-54 (266)
491 1tf7_A KAIC; homohexamer, hexa 51.6 11 0.00036 37.6 3.9 29 54-82 37-65 (525)
492 1mv5_A LMRA, multidrug resista 51.4 5.9 0.0002 34.8 1.8 19 55-73 27-45 (243)
493 2pcj_A ABC transporter, lipopr 50.7 6.8 0.00023 33.9 2.0 18 55-72 29-46 (224)
494 1ltq_A Polynucleotide kinase; 50.6 8.7 0.0003 34.8 2.9 20 58-77 4-23 (301)
495 1i84_S Smooth muscle myosin he 50.5 11 0.00037 41.8 4.0 62 15-77 121-190 (1184)
496 3ake_A Cytidylate kinase; CMP 50.3 11 0.00039 31.6 3.5 20 58-77 4-23 (208)
497 1g3q_A MIND ATPase, cell divis 50.3 16 0.00054 31.5 4.5 31 60-99 7-37 (237)
498 1ji0_A ABC transporter; ATP bi 50.2 7.4 0.00025 34.0 2.3 19 55-73 31-49 (240)
499 1q3t_A Cytidylate kinase; nucl 50.1 10 0.00034 33.0 3.1 24 54-77 14-37 (236)
500 2jeo_A Uridine-cytidine kinase 50.0 8.2 0.00028 33.8 2.6 22 55-76 24-45 (245)
No 1
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=100.00 E-value=2.1e-58 Score=459.00 Aligned_cols=363 Identities=31% Similarity=0.525 Sum_probs=311.2
Q ss_pred ccCCcccCCCCHHHHHHHHHhcCCCCCcHHHHHHHHHhhcCCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCce
Q 010357 16 ASCSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTF 95 (512)
Q Consensus 16 ~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (512)
+..+|+++++++.+.+.+. .+||..|+++|+++++.+++|++++++||||||||++|++|++..+...... ....+.+
T Consensus 54 ~~~~f~~~~l~~~l~~~l~-~~g~~~pt~iQ~~ai~~i~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~-~~~~~~~ 131 (434)
T 2db3_A 54 PIQHFTSADLRDIIIDNVN-KSGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLEDPHE-LELGRPQ 131 (434)
T ss_dssp CCCCGGGSCCCHHHHHHHH-HTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCCC-CCTTCCS
T ss_pred CcCChhhcCCCHHHHHHHH-HcCCCCCCHHHHHHHHHHhcCCCEEEECCCCCCchHHHHHHHHHHHHhcccc-cccCCcc
Confidence 4468999999999999995 5799999999999999999999999999999999999999999988764322 1234678
Q ss_pred EEEEcCcHHHHHHHHHHHHHHHhhcCCcceEEEeCCCchHHHHHHHcCCCCEEEeCChHHHHHHhhcCCCcCCceeEEEE
Q 010357 96 ALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIF 175 (512)
Q Consensus 96 ~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lV~ 175 (512)
+||++||++|+.|+++.+.+++...+ ..+..++||.........+..+++|+|+||++|.+++.. ....+.++++||+
T Consensus 132 ~lil~PtreLa~Q~~~~~~~~~~~~~-~~~~~~~gg~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~-~~~~l~~~~~lVl 209 (434)
T 2db3_A 132 VVIVSPTRELAIQIFNEARKFAFESY-LKIGIVYGGTSFRHQNECITRGCHVVIATPGRLLDFVDR-TFITFEDTRFVVL 209 (434)
T ss_dssp EEEECSSHHHHHHHHHHHHHHTTTSS-CCCCEECTTSCHHHHHHHHTTCCSEEEECHHHHHHHHHT-TSCCCTTCCEEEE
T ss_pred EEEEecCHHHHHHHHHHHHHHhccCC-cEEEEEECCCCHHHHHHHhhcCCCEEEEChHHHHHHHHh-CCcccccCCeEEE
Confidence 99999999999999999999876544 556778899888888888888999999999999999876 4456789999999
Q ss_pred cchhHHHhcCchHHHHHHHHHhccCCCCCCCCCCcccccceeEEEEEEecchhhHHHHHhhcCCCeEEccCCCcCCCCcc
Q 010357 176 DEADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLPEDKS 255 (512)
Q Consensus 176 DEah~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (512)
||||++.+.+|...+..++..+... ...|++++|||+++.+..+...++.++..+......
T Consensus 210 DEah~~~~~gf~~~~~~i~~~~~~~-------------~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~------ 270 (434)
T 2db3_A 210 DEADRMLDMGFSEDMRRIMTHVTMR-------------PEHQTLMFSATFPEEIQRMAGEFLKNYVFVAIGIVG------ 270 (434)
T ss_dssp ETHHHHTSTTTHHHHHHHHHCTTSC-------------SSCEEEEEESCCCHHHHHHHHTTCSSCEEEEESSTT------
T ss_pred ccHhhhhccCcHHHHHHHHHhcCCC-------------CCceEEEEeccCCHHHHHHHHHhccCCEEEEecccc------
Confidence 9999999999999999999876321 178999999999999998888888877766544321
Q ss_pred ccccCCcccchhhhccCCCccccccccccccccceeeeEEEecCCchHHHHHHHHHhhhccccCceEEEEeecchhhhhH
Q 010357 256 HVRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFH 335 (512)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~lvf~~~~~~~~~l 335 (512)
....++.+.+..+....|...+.+++... ..++||||++++.++.+
T Consensus 271 -----------------------------~~~~~i~~~~~~~~~~~k~~~l~~~l~~~-----~~~~lVF~~t~~~a~~l 316 (434)
T 2db3_A 271 -----------------------------GACSDVKQTIYEVNKYAKRSKLIEILSEQ-----ADGTIVFVETKRGADFL 316 (434)
T ss_dssp -----------------------------CCCTTEEEEEEECCGGGHHHHHHHHHHHC-----CTTEEEECSSHHHHHHH
T ss_pred -----------------------------ccccccceEEEEeCcHHHHHHHHHHHHhC-----CCCEEEEEeCcHHHHHH
Confidence 11234556666777778888888887753 34599999999999999
Q ss_pred HHhhhhhcCCCCCCChhHHHhhhhccceeeecCCCCHHHHHHHHHhhhcCCCcEEEeecccccCCCCCCCcEEEEeCCCC
Q 010357 336 YSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAG 415 (512)
Q Consensus 336 ~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~l~g~~~~~~r~~~~~~f~~~~~~vLvaT~~~~~Gldip~~~~VI~~~~p~ 415 (512)
++.|.+. ++.+..+||+++..+|..+++.|++|+.+|||||+++++|+|+|++++||+|+.|.
T Consensus 317 ~~~L~~~-----------------~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~v~~rGlDi~~v~~VI~~d~p~ 379 (434)
T 2db3_A 317 ASFLSEK-----------------EFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATSVASRGLDIKNIKHVINYDMPS 379 (434)
T ss_dssp HHHHHHT-----------------TCCEEEESTTSCHHHHHHHHHHHHTSSCSEEEECGGGTSSCCCTTCCEEEESSCCS
T ss_pred HHHHHhC-----------------CCCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEchhhhCCCCcccCCEEEEECCCC
Confidence 9999887 78899999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHhhhhcccCCCCccEEEecCcc-chhHHHHHH
Q 010357 416 EATEYVHRVGRTARLGERGDSLLFLQPV-EMDYLQDLE 452 (512)
Q Consensus 416 s~~~~~Q~~GRagR~g~~g~~~~~~~~~-~~~~~~~l~ 452 (512)
+..+|+||+||+||.|+.|.+++|+++. +...++.+.
T Consensus 380 ~~~~y~qriGR~gR~g~~G~a~~~~~~~~~~~~~~~l~ 417 (434)
T 2db3_A 380 KIDDYVHRIGRTGRVGNNGRATSFFDPEKDRAIAADLV 417 (434)
T ss_dssp SHHHHHHHHTTSSCTTCCEEEEEEECTTTCGGGHHHHH
T ss_pred CHHHHHHHhcccccCCCCCEEEEEEeccccHHHHHHHH
Confidence 9999999999999999999999999964 444444333
No 2
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=100.00 E-value=8.3e-56 Score=440.82 Aligned_cols=368 Identities=31% Similarity=0.501 Sum_probs=308.7
Q ss_pred cCCcccCCCCHHHHHHHHHhcCCCCCcHHHHHHHHHhhcCCCEEEEccCCChHhHHHHHHHHHHHhhcCCC---------
Q 010357 17 SCSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPR--------- 87 (512)
Q Consensus 17 ~~~~~~~~l~~~~~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~--------- 87 (512)
..+|+++++++.+.+.+. .+||.+|+++|+++++.+++++++++++|||||||++|++|+++.+......
T Consensus 14 ~~~f~~~~l~~~l~~~l~-~~~~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~ 92 (417)
T 2i4i_A 14 IESFSDVEMGEIIMGNIE-LTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKEN 92 (417)
T ss_dssp CSSGGGSCCCHHHHHHHH-HHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHHCCCHHHHHHHHC
T ss_pred cCCHhhCCCCHHHHHHHH-HCCCCCCCHHHHHHHHHHccCCCEEEEcCCCCHHHHHHHHHHHHHHHhccccchhhccccc
Confidence 457999999999999995 5699999999999999999999999999999999999999999887654321
Q ss_pred ---CCCCCCceEEEEcCcHHHHHHHHHHHHHHHhhcCCcceEEEeCCCchHHHHHHHcCCCCEEEeCChHHHHHHhhcCC
Q 010357 88 ---IDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSS 164 (512)
Q Consensus 88 ---~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~ 164 (512)
..+..+.++||++||++|+.|+++.+..++...+ ..+..+.||.........+..+++|+|+||++|.+.+.. ..
T Consensus 93 ~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~-~~ 170 (417)
T 2i4i_A 93 GRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSR-VRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMER-GK 170 (417)
T ss_dssp BTTBSCSBCCSEEEECSSHHHHHHHHHHHHHHHTTSS-CCEEEECSSSCHHHHHHHHTTCCSEEEECHHHHHHHHHT-TS
T ss_pred cccccccCCccEEEECCcHHHHHHHHHHHHHHhCcCC-ceEEEEECCCCHHHHHHHhhCCCCEEEEChHHHHHHHHc-CC
Confidence 1112346799999999999999999999876544 556778888888888888888899999999999998876 44
Q ss_pred CcCCceeEEEEcchhHHHhcCchHHHHHHHHHhccCCCCCCCCCCcccccceeEEEEEEecchhhHHHHHhhcCCCeEEc
Q 010357 165 FLHTNLRWIIFDEADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIG 244 (512)
Q Consensus 165 ~~~~~~~~lV~DEah~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~ 244 (512)
+.+.++++||+||||++.+.+|...+..++...... .....+++++|||+++....+...++.++..+.
T Consensus 171 ~~~~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~-----------~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~ 239 (417)
T 2i4i_A 171 IGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMP-----------PKGVRHTMMFSATFPKEIQMLARDFLDEYIFLA 239 (417)
T ss_dssp BCCTTCCEEEESSHHHHHHTTCHHHHHHHHTSSSCC-----------CBTTBEEEEEESCCCHHHHHHHHHHCSSCEEEE
T ss_pred cChhhCcEEEEEChhHhhccCcHHHHHHHHHhccCC-----------CcCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEE
Confidence 567789999999999999999999988887643211 112678999999999988888888887776654
Q ss_pred cCCCcCCCCccccccCCcccchhhhccCCCccccccccccccccceeeeEEEecCCchHHHHHHHHHhhhccccCceEEE
Q 010357 245 LDEKKLPEDKSHVRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVV 324 (512)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~lv 324 (512)
..... .....+.+.+..+....+...+.+++... ..++++||
T Consensus 240 ~~~~~-----------------------------------~~~~~i~~~~~~~~~~~~~~~l~~~l~~~---~~~~~~lV 281 (417)
T 2i4i_A 240 VGRVG-----------------------------------STSENITQKVVWVEESDKRSFLLDLLNAT---GKDSLTLV 281 (417)
T ss_dssp EC---------------------------------------CCSSEEEEEEECCGGGHHHHHHHHHHTC---CTTCEEEE
T ss_pred eCCCC-----------------------------------CCccCceEEEEEeccHhHHHHHHHHHHhc---CCCCeEEE
Confidence 43321 12344556666677777888888877753 35679999
Q ss_pred EeecchhhhhHHHhhhhhcCCCCCCChhHHHhhhhccceeeecCCCCHHHHHHHHHhhhcCCCcEEEeecccccCCCCCC
Q 010357 325 FFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPK 404 (512)
Q Consensus 325 f~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~l~g~~~~~~r~~~~~~f~~~~~~vLvaT~~~~~Gldip~ 404 (512)
||++++.++.+++.|... ++.+..+||+++..+|..+++.|++|+.+|||||+++++|+|+|+
T Consensus 282 f~~~~~~~~~l~~~L~~~-----------------~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gidip~ 344 (417)
T 2i4i_A 282 FVETKKGADSLEDFLYHE-----------------GYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISN 344 (417)
T ss_dssp ECSSHHHHHHHHHHHHHT-----------------TCCEEEECTTSCHHHHHHHHHHHHHTSSCEEEECHHHHTTSCCCC
T ss_pred EECCHHHHHHHHHHHHHC-----------------CCCeeEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhcCCCccc
Confidence 999999999999999887 788999999999999999999999999999999999999999999
Q ss_pred CcEEEEeCCCCChhHHHHhhhhcccCCCCccEEEecCccchhHHHHHHH
Q 010357 405 VKCIIQYDSAGEATEYVHRVGRTARLGERGDSLLFLQPVEMDYLQDLEK 453 (512)
Q Consensus 405 ~~~VI~~~~p~s~~~~~Q~~GRagR~g~~g~~~~~~~~~~~~~~~~l~~ 453 (512)
+++||++++|.+...|+||+||+||.|+.|.|++|+++.+...++.+.+
T Consensus 345 v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~ 393 (417)
T 2i4i_A 345 VKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLD 393 (417)
T ss_dssp EEEEEESSCCSSHHHHHHHHTTBCC--CCEEEEEEECGGGGGGHHHHHH
T ss_pred CCEEEEEcCCCCHHHHHHhcCccccCCCCceEEEEEccccHHHHHHHHH
Confidence 9999999999999999999999999999999999999998777666655
No 3
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=100.00 E-value=4.7e-56 Score=441.42 Aligned_cols=369 Identities=29% Similarity=0.507 Sum_probs=313.3
Q ss_pred CccCCcccCCCCHHHHHHHHHhcCCCCCcHHHHHHHHHhhcCCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCc
Q 010357 15 FASCSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGT 94 (512)
Q Consensus 15 ~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~ 94 (512)
-...+|+++++++++.+.+. .+||.+|+++|+++++.+++++++++++|||+|||++|++|+++.+... ..+.
T Consensus 34 ~~~~~f~~~~l~~~l~~~l~-~~g~~~~~~~Q~~ai~~i~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~------~~~~ 106 (410)
T 2j0s_A 34 DVTPTFDTMGLREDLLRGIY-AYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQ------VRET 106 (410)
T ss_dssp CCCCSGGGGCCCHHHHHHHH-HHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHTCCTT------SCSC
T ss_pred cCCCCHhhcCCCHHHHHHHH-HcCCCCCCHHHHHHHHHHhCCCCEEEECCCCCCchHHHHHHHHHHHhhc------cCCc
Confidence 34568999999999999995 5699999999999999999999999999999999999999999876431 2356
Q ss_pred eEEEEcCcHHHHHHHHHHHHHHHhhcCCcceEEEeCCCchHHHHHHHcCCCCEEEeCChHHHHHHhhcCCCcCCceeEEE
Q 010357 95 FALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWII 174 (512)
Q Consensus 95 ~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lV 174 (512)
++||++|+++|+.|+.+.+..+....+ ..+....+|.........+..+++|+|+||+++.+.+.. ..+.+..+++||
T Consensus 107 ~~lil~Pt~~L~~q~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~ivv~Tp~~l~~~l~~-~~~~~~~~~~vV 184 (410)
T 2j0s_A 107 QALILAPTRELAVQIQKGLLALGDYMN-VQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRR-RSLRTRAIKMLV 184 (410)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTTTT-CCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHT-TSSCCTTCCEEE
T ss_pred eEEEEcCcHHHHHHHHHHHHHHhccCC-eEEEEEECCCCHHHHHHHhhcCCCEEEcCHHHHHHHHHh-CCccHhheeEEE
Confidence 799999999999999999999876554 455677888888888778878899999999999998876 455667899999
Q ss_pred EcchhHHHhcCchHHHHHHHHHhccCCCCCCCCCCcccccceeEEEEEEecchhhHHHHHhhcCCCeEEccCCCcCCCCc
Q 010357 175 FDEADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLPEDK 254 (512)
Q Consensus 175 ~DEah~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (512)
+||||++.+.++...+..++..++. ..+++++|||+++....+...++.++..+......
T Consensus 185 iDEah~~~~~~~~~~~~~i~~~~~~---------------~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~----- 244 (410)
T 2j0s_A 185 LDEADEMLNKGFKEQIYDVYRYLPP---------------ATQVVLISATLPHEILEMTNKFMTDPIRILVKRDE----- 244 (410)
T ss_dssp EETHHHHTSTTTHHHHHHHHTTSCT---------------TCEEEEEESCCCHHHHTTGGGTCSSCEEECCCGGG-----
T ss_pred EccHHHHHhhhhHHHHHHHHHhCcc---------------CceEEEEEcCCCHHHHHHHHHHcCCCEEEEecCcc-----
Confidence 9999999999999888888877654 78999999999988777777667666655433221
Q ss_pred cccccCCcccchhhhccCCCccccccccccccccceeeeEEEecCCc-hHHHHHHHHHhhhccccCceEEEEeecchhhh
Q 010357 255 SHVRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCGS-RLAVLLSILKHLFDTEVSQKLVVFFSTCDAVD 333 (512)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-k~~~l~~~l~~~~~~~~~~~~lvf~~~~~~~~ 333 (512)
.....+.+.+....... +...+..++... ..+++||||++++.++
T Consensus 245 ------------------------------~~~~~~~~~~~~~~~~~~k~~~l~~~~~~~----~~~~~lVf~~~~~~~~ 290 (410)
T 2j0s_A 245 ------------------------------LTLEGIKQFFVAVEREEWKFDTLCDLYDTL----TITQAVIFCNTKRKVD 290 (410)
T ss_dssp ------------------------------CSCTTEEEEEEEESSTTHHHHHHHHHHHHH----TSSEEEEECSSHHHHH
T ss_pred ------------------------------ccCCCceEEEEEeCcHHhHHHHHHHHHHhc----CCCcEEEEEcCHHHHH
Confidence 11234455555555444 777777776653 4579999999999999
Q ss_pred hHHHhhhhhcCCCCCCChhHHHhhhhccceeeecCCCCHHHHHHHHHhhhcCCCcEEEeecccccCCCCCCCcEEEEeCC
Q 010357 334 FHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDS 413 (512)
Q Consensus 334 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~l~g~~~~~~r~~~~~~f~~~~~~vLvaT~~~~~Gldip~~~~VI~~~~ 413 (512)
.+++.|... ++.+..+||+++..+|..+++.|++|+.+|||||+++++|+|+|++++||+++.
T Consensus 291 ~l~~~L~~~-----------------~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~v~~Vi~~~~ 353 (410)
T 2j0s_A 291 WLTEKMREA-----------------NFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDL 353 (410)
T ss_dssp HHHHHHHHT-----------------TCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECGGGSSSCCCTTEEEEEESSC
T ss_pred HHHHHHHhC-----------------CCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECChhhCcCCcccCCEEEEECC
Confidence 999999887 778999999999999999999999999999999999999999999999999999
Q ss_pred CCChhHHHHhhhhcccCCCCccEEEecCccchhHHHHHHHc-CCCCCccCh
Q 010357 414 AGEATEYVHRVGRTARLGERGDSLLFLQPVEMDYLQDLEKH-GVSLTEYPL 463 (512)
Q Consensus 414 p~s~~~~~Q~~GRagR~g~~g~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~ 463 (512)
|.+...|+||+||+||.|++|.+++|+++.+...++.+++. +..++++++
T Consensus 354 p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 404 (410)
T 2j0s_A 354 PNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPM 404 (410)
T ss_dssp CSSHHHHHHHHTTSSGGGCCEEEEEEEEGGGHHHHHHHHHHTTCCCEECCS
T ss_pred CCCHHHHHHhcccccCCCCceEEEEEecHHHHHHHHHHHHHhCCCceeccc
Confidence 99999999999999999999999999999999999998874 666666553
No 4
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=100.00 E-value=7.4e-55 Score=431.47 Aligned_cols=367 Identities=30% Similarity=0.472 Sum_probs=309.6
Q ss_pred ccCCcccCCCCHHHHHHHHHhcCCCCCcHHHHHHHHHhhcCCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCce
Q 010357 16 ASCSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTF 95 (512)
Q Consensus 16 ~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (512)
.+.+|+++++++++.+.+. .+||.+|+++|+++++.+++++++++++|||+|||++|++|++..+... ..+.+
T Consensus 19 ~~~~f~~~~l~~~l~~~l~-~~g~~~~~~~Q~~~i~~i~~~~~~li~a~TGsGKT~~~~~~~~~~~~~~------~~~~~ 91 (400)
T 1s2m_A 19 KGNTFEDFYLKRELLMGIF-EAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKPK------LNKIQ 91 (400)
T ss_dssp --CCGGGGCCCHHHHHHHH-HTTCCSCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHCCTT------SCSCC
T ss_pred ccCChhhcCCCHHHHHHHH-HCCCCCCCHHHHHHHHHHhcCCCEEEECCCCcHHHHHHHHHHHHHHhhc------cCCcc
Confidence 4568999999999999995 5699999999999999999999999999999999999999999876431 13567
Q ss_pred EEEEcCcHHHHHHHHHHHHHHHhhcCCcceEEEeCCCchHHHHHHHcCCCCEEEeCChHHHHHHhhcCCCcCCceeEEEE
Q 010357 96 ALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIF 175 (512)
Q Consensus 96 ~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lV~ 175 (512)
++|++|+++|+.|+.+.+..++...+ ..+....++.........+...++|+|+||+++.+.+.. ....+.++++||+
T Consensus 92 ~lil~P~~~L~~q~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~-~~~~~~~~~~vIi 169 (400)
T 1s2m_A 92 ALIMVPTRELALQTSQVVRTLGKHCG-ISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASR-KVADLSDCSLFIM 169 (400)
T ss_dssp EEEECSSHHHHHHHHHHHHHHTTTTT-CCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHT-TCSCCTTCCEEEE
T ss_pred EEEEcCCHHHHHHHHHHHHHHhcccC-ceEEEEeCCcchHHHHHHhcCCCCEEEEchHHHHHHHHh-CCcccccCCEEEE
Confidence 99999999999999999999876554 455667778777777777778899999999999988765 4455678999999
Q ss_pred cchhHHHhcCchHHHHHHHHHhccCCCCCCCCCCcccccceeEEEEEEecchhhHHHHHhhcCCCeEEccCCCcCCCCcc
Q 010357 176 DEADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLPEDKS 255 (512)
Q Consensus 176 DEah~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (512)
||||++.+.++...+..++..++. ..+++++|||++..........+..+..+......
T Consensus 170 DEaH~~~~~~~~~~~~~i~~~~~~---------------~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~------ 228 (400)
T 1s2m_A 170 DEADKMLSRDFKTIIEQILSFLPP---------------THQSLLFSATFPLTVKEFMVKHLHKPYEINLMEEL------ 228 (400)
T ss_dssp ESHHHHSSHHHHHHHHHHHTTSCS---------------SCEEEEEESCCCHHHHHHHHHHCSSCEEESCCSSC------
T ss_pred eCchHhhhhchHHHHHHHHHhCCc---------------CceEEEEEecCCHHHHHHHHHHcCCCeEEEecccc------
Confidence 999999887777778877766654 78999999999988887777777666554332211
Q ss_pred ccccCCcccchhhhccCCCccccccccccccccceeeeEEEecCCchHHHHHHHHHhhhccccCceEEEEeecchhhhhH
Q 010357 256 HVRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFH 335 (512)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~lvf~~~~~~~~~l 335 (512)
....+.+.+.......+...+..++.. ..++++||||++++.++.+
T Consensus 229 ------------------------------~~~~~~~~~~~~~~~~k~~~l~~~~~~----~~~~~~lVf~~~~~~~~~l 274 (400)
T 1s2m_A 229 ------------------------------TLKGITQYYAFVEERQKLHCLNTLFSK----LQINQAIIFCNSTNRVELL 274 (400)
T ss_dssp ------------------------------BCTTEEEEEEECCGGGHHHHHHHHHHH----SCCSEEEEECSSHHHHHHH
T ss_pred ------------------------------ccCCceeEEEEechhhHHHHHHHHHhh----cCCCcEEEEEecHHHHHHH
Confidence 123344555555666777777776654 3567999999999999999
Q ss_pred HHhhhhhcCCCCCCChhHHHhhhhccceeeecCCCCHHHHHHHHHhhhcCCCcEEEeecccccCCCCCCCcEEEEeCCCC
Q 010357 336 YSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAG 415 (512)
Q Consensus 336 ~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~l~g~~~~~~r~~~~~~f~~~~~~vLvaT~~~~~Gldip~~~~VI~~~~p~ 415 (512)
++.|.+. +..+..+||+|+..+|..+++.|++|+.+|||||+++++|+|+|++++||+++.|.
T Consensus 275 ~~~L~~~-----------------~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~~~~Vi~~~~p~ 337 (400)
T 1s2m_A 275 AKKITDL-----------------GYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDLLTRGIDIQAVNVVINFDFPK 337 (400)
T ss_dssp HHHHHHH-----------------TCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESSCSSSSCCCTTEEEEEESSCCS
T ss_pred HHHHHhc-----------------CCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCCCccCCCEEEEeCCCC
Confidence 9999887 78899999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHhhhhcccCCCCccEEEecCccchhHHHHHHHc-CCCCCccCh
Q 010357 416 EATEYVHRVGRTARLGERGDSLLFLQPVEMDYLQDLEKH-GVSLTEYPL 463 (512)
Q Consensus 416 s~~~~~Q~~GRagR~g~~g~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~ 463 (512)
+...|+||+||+||.|++|.|++++++.|...++.+++. +..+++++.
T Consensus 338 s~~~~~Qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~ 386 (400)
T 1s2m_A 338 TAETYLHRIGRSGRFGHLGLAINLINWNDRFNLYKIEQELGTEIAAIPA 386 (400)
T ss_dssp SHHHHHHHHCBSSCTTCCEEEEEEECGGGHHHHHHHHHHHTCCCEECCS
T ss_pred CHHHHHHhcchhcCCCCCceEEEEeccchHHHHHHHHHHhCCCcccccc
Confidence 999999999999999999999999999999999998875 777776653
No 5
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=100.00 E-value=2.9e-54 Score=426.00 Aligned_cols=370 Identities=27% Similarity=0.464 Sum_probs=307.9
Q ss_pred ccCCcccCCCCHHHHHHHHHhcCCCCCcHHHHHHHHHhhcCCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCce
Q 010357 16 ASCSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTF 95 (512)
Q Consensus 16 ~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (512)
...+|+++++++.+.+.+.+ +||.+|+++|+++++.+++++++++.+|||+|||++|++|++..+... ..+.+
T Consensus 6 ~~~~f~~~~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~------~~~~~ 78 (391)
T 1xti_A 6 MSSGFRDFLLKPELLRAIVD-CGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPV------TGQVS 78 (391)
T ss_dssp ---CGGGGCCCHHHHHHHHH-HSCCSCCHHHHHHHHHHTTTCCEEEECSSCSSHHHHHHHHHHHHCCCC------TTCCC
T ss_pred CCCChhhcCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHhhccc------CCCee
Confidence 44689999999999999964 699999999999999999999999999999999999999999876431 12567
Q ss_pred EEEEcCcHHHHHHHHHHHHHHHhhcCCcceEEEeCCCchHHHHHHHcC-CCCEEEeCChHHHHHHhhcCCCcCCceeEEE
Q 010357 96 ALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRK-GISILVATPGRLLDHLKHTSSFLHTNLRWII 174 (512)
Q Consensus 96 ~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lV 174 (512)
+||++|+++|+.|+.+.+..+....+...+..+.|+.........+.. .++|+|+||+++...+.. ....+.++++||
T Consensus 79 ~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~-~~~~~~~~~~vV 157 (391)
T 1xti_A 79 VLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARN-KSLNLKHIKHFI 157 (391)
T ss_dssp EEEECSCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHHHHHSCCSEEEECHHHHHHHHHT-TSSCCTTCSEEE
T ss_pred EEEECCCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHHHhcCCCCEEEECHHHHHHHHHc-CCccccccCEEE
Confidence 999999999999999999999876655677778888777666665544 479999999999998876 445677899999
Q ss_pred EcchhHHHhc-CchHHHHHHHHHhccCCCCCCCCCCcccccceeEEEEEEecchhhHHHHHhhcCCCeEEccCCCcCCCC
Q 010357 175 FDEADRILEL-GFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLPED 253 (512)
Q Consensus 175 ~DEah~l~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (512)
+||||++.+. ++...+..++...+. ..+++++|||+++........++..+..+.......
T Consensus 158 iDEaH~~~~~~~~~~~~~~~~~~~~~---------------~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~--- 219 (391)
T 1xti_A 158 LDECDKMLEQLDMRRDVQEIFRMTPH---------------EKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETK--- 219 (391)
T ss_dssp ECSHHHHTSSHHHHHHHHHHHHTSCS---------------SSEEEEEESSCCSTHHHHHHHHCSSCEEEECCCCCC---
T ss_pred EeCHHHHhhccchHHHHHHHHhhCCC---------------CceEEEEEeeCCHHHHHHHHHHcCCCeEEEecCccc---
Confidence 9999999773 566777777766554 789999999999988888888887776654433210
Q ss_pred ccccccCCcccchhhhccCCCccccccccccccccceeeeEEEecCCchHHHHHHHHHhhhccccCceEEEEeecchhhh
Q 010357 254 KSHVRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVD 333 (512)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~lvf~~~~~~~~ 333 (512)
.....+.+.+.......+...+.+++... .++++||||++++.++
T Consensus 220 -------------------------------~~~~~~~~~~~~~~~~~~~~~l~~~l~~~----~~~~~lvf~~~~~~~~ 264 (391)
T 1xti_A 220 -------------------------------LTLHGLQQYYVKLKDNEKNRKLFDLLDVL----EFNQVVIFVKSVQRCI 264 (391)
T ss_dssp -------------------------------CCCTTCEEEEEECCGGGHHHHHHHHHHHS----CCSEEEEECSCHHHHH
T ss_pred -------------------------------cCcccceEEEEEcCchhHHHHHHHHHHhc----CCCcEEEEeCcHHHHH
Confidence 11233445566666677877777777653 5689999999999999
Q ss_pred hHHHhhhhhcCCCCCCChhHHHhhhhccceeeecCCCCHHHHHHHHHhhhcCCCcEEEeecccccCCCCCCCcEEEEeCC
Q 010357 334 FHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDS 413 (512)
Q Consensus 334 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~l~g~~~~~~r~~~~~~f~~~~~~vLvaT~~~~~Gldip~~~~VI~~~~ 413 (512)
.+++.|... +..+..+||+|+..+|..+++.|++|+.+|||||+++++|+|+|++++||+++.
T Consensus 265 ~l~~~L~~~-----------------~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~~~Vi~~~~ 327 (391)
T 1xti_A 265 ALAQLLVEQ-----------------NFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDM 327 (391)
T ss_dssp HHHHHHHHT-----------------TCCEEEECTTSCHHHHHHHHHHHHTTCCSEEEESCCCSSCBCCTTEEEEEESSC
T ss_pred HHHHHHHhC-----------------CCcEEEEeCCCCHHHHHHHHHHHhcCCCcEEEECChhhcCCCcccCCEEEEeCC
Confidence 999999887 778999999999999999999999999999999999999999999999999999
Q ss_pred CCChhHHHHhhhhcccCCCCccEEEecCcc-chhHHHHHHHc-CCCCCccCh
Q 010357 414 AGEATEYVHRVGRTARLGERGDSLLFLQPV-EMDYLQDLEKH-GVSLTEYPL 463 (512)
Q Consensus 414 p~s~~~~~Q~~GRagR~g~~g~~~~~~~~~-~~~~~~~l~~~-~~~~~~~~~ 463 (512)
|++...|+||+||+||.|++|.|++++++. +...++.+.+. ++.+++++.
T Consensus 328 p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (391)
T 1xti_A 328 PEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPD 379 (391)
T ss_dssp CSSHHHHHHHHCBCSSSCCCCEEEEEECSHHHHHHHHHHHHHTTCCCEECCS
T ss_pred CCCHHHHHHhcccccCCCCceEEEEEEcccchHHHHHHHHHHhcCChhhCCc
Confidence 999999999999999999999999999876 45677777764 666666654
No 6
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=100.00 E-value=2.7e-54 Score=429.38 Aligned_cols=375 Identities=24% Similarity=0.429 Sum_probs=308.3
Q ss_pred cccccccCccCCcccCCCCHHHHHHHHHhcCCCCCcHHHHHHHHHhhcC--CCEEEEccCCChHhHHHHHHHHHHHhhcC
Q 010357 8 KETVKEIFASCSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSG--RHVLVNAATGTGKTVAYLAPIINHLQSYS 85 (512)
Q Consensus 8 ~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~Q~~~~~~~~~~--~~~lv~~pTGsGKT~~~~~~~~~~~~~~~ 85 (512)
...+.|.++..+|+++++++.+.+.+. .+||..|+++|.++++.++++ +++++++|||+|||++|++|+++.+...
T Consensus 15 ~~~~~~~~~~~~f~~~~l~~~l~~~l~-~~g~~~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~- 92 (412)
T 3fht_A 15 RDPNSPLYSVKSFEELRLKPQLLQGVY-AMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPA- 92 (412)
T ss_dssp TCTTSTTCCSSCTGGGTCCHHHHHHHH-HTTCCSCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHHHHHHHHHCCTT-
T ss_pred ccCCCCccccCCHhhCCCCHHHHHHHH-HcCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHHHHHHHHHhhhc-
Confidence 445678899999999999999999995 579999999999999999987 8999999999999999999999887542
Q ss_pred CCCCCCCCceEEEEcCcHHHHHHHHHHHHHHHhhcCCcceEEEeCCCchHHHHHHHcCCCCEEEeCChHHHHHHhhcCCC
Q 010357 86 PRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSF 165 (512)
Q Consensus 86 ~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~ 165 (512)
..+.+++|++|+++|+.|+++.+..+...+....+....++...... ....++|+|+||+++.+.+...+.+
T Consensus 93 -----~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ivv~T~~~l~~~~~~~~~~ 164 (412)
T 3fht_A 93 -----NKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG---QKISEQIVIGTPGTVLDWCSKLKFI 164 (412)
T ss_dssp -----SCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTCCCCTT---CCCCCSEEEECHHHHHHHHTTSCSS
T ss_pred -----CCCCCEEEECCCHHHHHHHHHHHHHHHhhcccceEEEeecCcchhhh---hcCCCCEEEECchHHHHHHHhcCCc
Confidence 13557999999999999999999999876655666666666543322 1345799999999999998776677
Q ss_pred cCCceeEEEEcchhHHHh-cCchHHHHHHHHHhccCCCCCCCCCCcccccceeEEEEEEecchhhHHHHHhhcCCCeEEc
Q 010357 166 LHTNLRWIIFDEADRILE-LGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIG 244 (512)
Q Consensus 166 ~~~~~~~lV~DEah~l~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~ 244 (512)
.+.++++||+||||++.+ .++...+..+...++. ..+++++|||+++....+....+..+..+.
T Consensus 165 ~~~~~~~iViDEah~~~~~~~~~~~~~~~~~~~~~---------------~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~ 229 (412)
T 3fht_A 165 DPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPR---------------NCQMLLFSATFEDSVWKFAQKVVPDPNVIK 229 (412)
T ss_dssp CGGGCCEEEEETHHHHHSTTTTHHHHHHHHHTSCT---------------TCEEEEEESCCCHHHHHHHHHHSSSCEEEC
T ss_pred ChhhCcEEEEeCHHHHhhcCCcHHHHHHHHhhCCC---------------CceEEEEEeecCHHHHHHHHHhcCCCeEEe
Confidence 778999999999999987 5677777777777665 789999999999998888888888877765
Q ss_pred cCCCcCCCCccccccCCcccchhhhccCCCccccccccccccccceeeeEEEecC-CchHHHHHHHHHhhhccccCceEE
Q 010357 245 LDEKKLPEDKSHVRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPC-GSRLAVLLSILKHLFDTEVSQKLV 323 (512)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~k~~~l~~~l~~~~~~~~~~~~l 323 (512)
..... .....+.+.+..... ..+...+..++.. ..++++|
T Consensus 230 ~~~~~-----------------------------------~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~l 270 (412)
T 3fht_A 230 LKREE-----------------------------------ETLDTIKQYYVLCSSRDEKFQALCNLYGA----ITIAQAM 270 (412)
T ss_dssp CCGGG-----------------------------------SSCTTEEEEEEECSSHHHHHHHHHHHHHH----HSSSEEE
T ss_pred ecccc-----------------------------------ccccCceEEEEEcCChHHHHHHHHHHHhh----cCCCCEE
Confidence 54332 112334444444433 3455555555553 3567999
Q ss_pred EEeecchhhhhHHHhhhhhcCCCCCCChhHHHhhhhccceeeecCCCCHHHHHHHHHhhhcCCCcEEEeecccccCCCCC
Q 010357 324 VFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFP 403 (512)
Q Consensus 324 vf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~l~g~~~~~~r~~~~~~f~~~~~~vLvaT~~~~~Gldip 403 (512)
|||++++.++.+++.|... +..+..+||+|+..+|..+++.|++|+.+|||||+++++|+|+|
T Consensus 271 vf~~~~~~~~~l~~~L~~~-----------------~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip 333 (412)
T 3fht_A 271 IFCHTRKTASWLAAELSKE-----------------GHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVE 333 (412)
T ss_dssp EECSSHHHHHHHHHHHHHT-----------------TCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECGGGTSSCCCT
T ss_pred EEeCCHHHHHHHHHHHHhC-----------------CCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcCccccCCCcc
Confidence 9999999999999999987 77899999999999999999999999999999999999999999
Q ss_pred CCcEEEEeCCC------CChhHHHHhhhhcccCCCCccEEEecCccc-hhHHHHHHHc-CCCCCccCh
Q 010357 404 KVKCIIQYDSA------GEATEYVHRVGRTARLGERGDSLLFLQPVE-MDYLQDLEKH-GVSLTEYPL 463 (512)
Q Consensus 404 ~~~~VI~~~~p------~s~~~~~Q~~GRagR~g~~g~~~~~~~~~~-~~~~~~l~~~-~~~~~~~~~ 463 (512)
++++||+++.| .+..+|+||+||+||.|+.|.+++++++.+ ...++.+++. +..+++++.
T Consensus 334 ~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 401 (412)
T 3fht_A 334 QVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQEHFNKKIERLDT 401 (412)
T ss_dssp TEEEEEESSCCBCSSSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHHHHHHHHHHHHHHTCCCEEC--
T ss_pred CCCEEEEECCCCCCCCCcchheeecccCcccCCCCCceEEEEEcChhhHHHHHHHHHHHCCccccCCC
Confidence 99999999999 467899999999999999999999998765 6778877774 555555543
No 7
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=100.00 E-value=1.5e-54 Score=431.52 Aligned_cols=366 Identities=30% Similarity=0.481 Sum_probs=296.2
Q ss_pred cCCcccCCCCHHHHHHHHHhcCCCCCcHHHHHHHHHhhcCCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceE
Q 010357 17 SCSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFA 96 (512)
Q Consensus 17 ~~~~~~~~l~~~~~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (512)
..+|+++++++.+.+.+. .+||..|+++|+++++.+++++++++++|||+|||++|++++++.+... ..+.++
T Consensus 39 ~~~f~~~~l~~~~~~~l~-~~~~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~------~~~~~~ 111 (414)
T 3eiq_A 39 VDSFDDMNLSESLLRGIY-AYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELD------LKATQA 111 (414)
T ss_dssp CCCGGGGCCCHHHHHHHH-HTTCCSCCHHHHHHHHHHHTTCCEEECCCSCSSSHHHHHHHHHHHCCTT------SCSCCE
T ss_pred hcCHhhCCCCHHHHHHHH-HcCCCCCCHHHHHHhHHHhCCCCEEEECCCCCcccHHHHHHHHHHHhhc------CCceeE
Confidence 468999999999999995 5799999999999999999999999999999999999999999887542 136679
Q ss_pred EEEcCcHHHHHHHHHHHHHHHhhcCCcceEEEeCCCchHHHHHHHc-CCCCEEEeCChHHHHHHhhcCCCcCCceeEEEE
Q 010357 97 LVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLR-KGISILVATPGRLLDHLKHTSSFLHTNLRWIIF 175 (512)
Q Consensus 97 lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lV~ 175 (512)
+|++|+++|+.|+.+.+..++...+ ..+....++.........+. ..++|+|+||++|.+.+.. ..+.+..+++||+
T Consensus 112 lil~P~~~L~~q~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~-~~~~~~~~~~vVi 189 (414)
T 3eiq_A 112 LVLAPTRELAQQIQKVVMALGDYMG-ASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNR-RYLSPKYIKMFVL 189 (414)
T ss_dssp EEECSSHHHHHHHHHHHHHHGGGSC-CCEEECCCCTTHHHHHHHHTTTCCSEEEECHHHHHHHHHH-TSSCSTTCCEEEE
T ss_pred EEEeChHHHHHHHHHHHHHHhcccC-ceEEEEECCcchHHHHHHHhcCCCCEEEECHHHHHHHHHc-CCcccccCcEEEE
Confidence 9999999999999999999877655 45566677777776666665 6689999999999998876 5556678999999
Q ss_pred cchhHHHhcCchHHHHHHHHHhccCCCCCCCCCCcccccceeEEEEEEecchhhHHHHHhhcCCCeEEccCCCcCCCCcc
Q 010357 176 DEADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLPEDKS 255 (512)
Q Consensus 176 DEah~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (512)
||||++.+.++...+..++..++. ..+++++|||+++........++.++..+.......
T Consensus 190 DEah~~~~~~~~~~~~~~~~~~~~---------------~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~----- 249 (414)
T 3eiq_A 190 DEADEMLSRGFKDQIYDIFQKLNS---------------NTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEEL----- 249 (414)
T ss_dssp CSHHHHHHTTTHHHHHHHHTTSCT---------------TCEEEEECSCCCHHHHHHHTTTCSSCEEECCCCCCC-----
T ss_pred ECHHHhhccCcHHHHHHHHHhCCC---------------CCeEEEEEEecCHHHHHHHHHHcCCCEEEEecCCcc-----
Confidence 999999999999999998877765 889999999999988888888888777665544321
Q ss_pred ccccCCcccchhhhccCCCccccccccccccccceeeeEEEecCC-chHHHHHHHHHhhhccccCceEEEEeecchhhhh
Q 010357 256 HVRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCG-SRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDF 334 (512)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~k~~~l~~~l~~~~~~~~~~~~lvf~~~~~~~~~ 334 (512)
....+.+.+...... .+...+..++.. ...+++||||++++.++.
T Consensus 250 ------------------------------~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~lvf~~~~~~~~~ 295 (414)
T 3eiq_A 250 ------------------------------TLEGIRQFYINVEREEWKLDTLCDLYET----LTITQAVIFINTRRKVDW 295 (414)
T ss_dssp ------------------------------CTTSCCEEEEECSSSTTHHHHHHHHHHS----SCCSSCEEECSCHHHHHH
T ss_pred ------------------------------CCCCceEEEEEeChHHhHHHHHHHHHHh----CCCCcEEEEeCCHHHHHH
Confidence 123334444444433 466666666654 356799999999999999
Q ss_pred HHHhhhhhcCCCCCCChhHHHhhhhccceeeecCCCCHHHHHHHHHhhhcCCCcEEEeecccccCCCCCCCcEEEEeCCC
Q 010357 335 HYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSA 414 (512)
Q Consensus 335 l~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~l~g~~~~~~r~~~~~~f~~~~~~vLvaT~~~~~Gldip~~~~VI~~~~p 414 (512)
+++.|... ++.+..+||+|+..+|..+++.|++|+.+|||||+++++|+|+|++++||+++.|
T Consensus 296 l~~~l~~~-----------------~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~v~~Vi~~~~p 358 (414)
T 3eiq_A 296 LTEKMHAR-----------------DFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLP 358 (414)
T ss_dssp HHHHHHTT-----------------TCCCEEC---CHHHHHHHHHHHHSCC---CEEECSSCC--CCGGGCSCEEESSCC
T ss_pred HHHHHHhc-----------------CCeEEEecCCCCHHHHHHHHHHHHcCCCcEEEECCccccCCCccCCCEEEEeCCC
Confidence 99999887 7889999999999999999999999999999999999999999999999999999
Q ss_pred CChhHHHHhhhhcccCCCCccEEEecCccchhHHHHHHHc-CCCCCccC
Q 010357 415 GEATEYVHRVGRTARLGERGDSLLFLQPVEMDYLQDLEKH-GVSLTEYP 462 (512)
Q Consensus 415 ~s~~~~~Q~~GRagR~g~~g~~~~~~~~~~~~~~~~l~~~-~~~~~~~~ 462 (512)
.+...|+||+||+||.|++|.|++++++.+...++.+.+. +..+++++
T Consensus 359 ~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (414)
T 3eiq_A 359 TNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDIETFYNTSIEEMP 407 (414)
T ss_dssp SSTHHHHHHSCCC-------CEEEEECSTHHHHHHHHHHHTTCCCEECC
T ss_pred CCHHHhhhhcCcccCCCCCceEEEEEcHHHHHHHHHHHHHHcCCccccC
Confidence 9999999999999999999999999999999999888875 55555554
No 8
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=1e-53 Score=418.53 Aligned_cols=360 Identities=31% Similarity=0.534 Sum_probs=304.6
Q ss_pred ccCCcccCCCCHHHHHHHHHhcCCCCCcHHHHHHHHHhhcC-CCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCc
Q 010357 16 ASCSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSG-RHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGT 94 (512)
Q Consensus 16 ~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~Q~~~~~~~~~~-~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~ 94 (512)
...+|+++++++++.+.+.+ +||.+|+++|+++++.++++ +++++.+|||+|||++++++++..+.. ..+.
T Consensus 4 ~~~~f~~~~l~~~~~~~l~~-~g~~~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~-------~~~~ 75 (367)
T 1hv8_A 4 EYMNFNELNLSDNILNAIRN-KGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNE-------NNGI 75 (367)
T ss_dssp CCCCGGGSSCCHHHHHHHHH-HTCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCS-------SSSC
T ss_pred ccCchhhcCCCHHHHHHHHH-cCCCCCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHHHhcc-------cCCC
Confidence 34689999999999999965 69999999999999999988 699999999999999999999887654 2467
Q ss_pred eEEEEcCcHHHHHHHHHHHHHHHhhcCCcceEEEeCCCchHHHHHHHcCCCCEEEeCChHHHHHHhhcCCCcCCceeEEE
Q 010357 95 FALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWII 174 (512)
Q Consensus 95 ~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lV 174 (512)
+++|++|+++|+.|+.+.+..+....+ ..+....++.........+. .++|+|+||+++.+.+.. ....+.++++||
T Consensus 76 ~~lil~P~~~L~~q~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~-~~~iiv~T~~~l~~~~~~-~~~~~~~~~~iI 152 (367)
T 1hv8_A 76 EAIILTPTRELAIQVADEIESLKGNKN-LKIAKIYGGKAIYPQIKALK-NANIVVGTPGRILDHINR-GTLNLKNVKYFI 152 (367)
T ss_dssp CEEEECSCHHHHHHHHHHHHHHHCSSC-CCEEEECTTSCHHHHHHHHH-TCSEEEECHHHHHHHHHT-TCSCTTSCCEEE
T ss_pred cEEEEcCCHHHHHHHHHHHHHHhCCCC-ceEEEEECCcchHHHHhhcC-CCCEEEecHHHHHHHHHc-CCcccccCCEEE
Confidence 799999999999999999999876543 45566777777666555554 689999999999998876 445567899999
Q ss_pred EcchhHHHhcCchHHHHHHHHHhccCCCCCCCCCCcccccceeEEEEEEecchhhHHHHHhhcCCCeEEccCCCcCCCCc
Q 010357 175 FDEADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLPEDK 254 (512)
Q Consensus 175 ~DEah~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (512)
+||||++.+.++...+..++..++. ..+++++|||+++........++..+..+....
T Consensus 153 iDEah~~~~~~~~~~~~~~~~~~~~---------------~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~------- 210 (367)
T 1hv8_A 153 LDEADEMLNMGFIKDVEKILNACNK---------------DKRILLFSATMPREILNLAKKYMGDYSFIKAKI------- 210 (367)
T ss_dssp EETHHHHHTTTTHHHHHHHHHTSCS---------------SCEEEEECSSCCHHHHHHHHHHCCSEEEEECCS-------
T ss_pred EeCchHhhhhchHHHHHHHHHhCCC---------------CceEEEEeeccCHHHHHHHHHHcCCCeEEEecC-------
Confidence 9999999999998888888877655 789999999999887777776666555432221
Q ss_pred cccccCCcccchhhhccCCCccccccccccccccceeeeEEEecCCchHHHHHHHHHhhhccccCceEEEEeecchhhhh
Q 010357 255 SHVRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDF 334 (512)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~lvf~~~~~~~~~ 334 (512)
...+.+.+......++...+...+. ..+.++||||++++.++.
T Consensus 211 --------------------------------~~~~~~~~~~~~~~~~~~~l~~~l~-----~~~~~~lvf~~~~~~~~~ 253 (367)
T 1hv8_A 211 --------------------------------NANIEQSYVEVNENERFEALCRLLK-----NKEFYGLVFCKTKRDTKE 253 (367)
T ss_dssp --------------------------------SSSSEEEEEECCGGGHHHHHHHHHC-----STTCCEEEECSSHHHHHH
T ss_pred --------------------------------CCCceEEEEEeChHHHHHHHHHHHh-----cCCCcEEEEECCHHHHHH
Confidence 1233445555666677777766664 356799999999999999
Q ss_pred HHHhhhhhcCCCCCCChhHHHhhhhccceeeecCCCCHHHHHHHHHhhhcCCCcEEEeecccccCCCCCCCcEEEEeCCC
Q 010357 335 HYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSA 414 (512)
Q Consensus 335 l~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~l~g~~~~~~r~~~~~~f~~~~~~vLvaT~~~~~Gldip~~~~VI~~~~p 414 (512)
+++.|... +..+..+||+++..+|..+++.|++|+.+|||||+++++|+|+|++++||+++.|
T Consensus 254 l~~~L~~~-----------------~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~~~~~ 316 (367)
T 1hv8_A 254 LASMLRDI-----------------GFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATDVMSRGIDVNDLNCVINYHLP 316 (367)
T ss_dssp HHHHHHHT-----------------TCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECTTHHHHCCCSCCSEEEESSCC
T ss_pred HHHHHHhc-----------------CCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECChhhcCCCcccCCEEEEecCC
Confidence 99999887 7789999999999999999999999999999999999999999999999999999
Q ss_pred CChhHHHHhhhhcccCCCCccEEEecCccchhHHHHHHHc-CCCCCccC
Q 010357 415 GEATEYVHRVGRTARLGERGDSLLFLQPVEMDYLQDLEKH-GVSLTEYP 462 (512)
Q Consensus 415 ~s~~~~~Q~~GRagR~g~~g~~~~~~~~~~~~~~~~l~~~-~~~~~~~~ 462 (512)
.++.+|.||+||+||.|++|.+++++++.+...++.+++. +..+++++
T Consensus 317 ~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 365 (367)
T 1hv8_A 317 QNPESYMHRIGRTGRAGKKGKAISIINRREYKKLRYIERAMKLKIKKLK 365 (367)
T ss_dssp SCHHHHHHHSTTTCCSSSCCEEEEEECTTSHHHHHHHHHHHTCCCCCBC
T ss_pred CCHHHhhhcccccccCCCccEEEEEEcHHHHHHHHHHHHHhCCCCceec
Confidence 9999999999999999999999999999999999988875 66666554
No 9
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=100.00 E-value=1.5e-53 Score=439.86 Aligned_cols=386 Identities=30% Similarity=0.464 Sum_probs=305.5
Q ss_pred CCcccCC----CCHHHHHHHHHhcCCCCCcHHHHHHHHHhh--cCCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCC
Q 010357 18 CSFSSLG----LHSTLCDQLRERLGFEAPTKVQAQAIPVIL--SGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRS 91 (512)
Q Consensus 18 ~~~~~~~----l~~~~~~~l~~~~~~~~~~~~Q~~~~~~~~--~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~ 91 (512)
.+|+++. +++++.+.+ ..+||..|+|+|.++++.++ .+++++++||||+|||++|++|+++.+...... ..
T Consensus 17 ~~~~~l~~~~~l~~~l~~~l-~~~g~~~~~~~Q~~~i~~il~~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~~--~~ 93 (579)
T 3sqw_A 17 VTLDSLLEEGVLDKEIHKAI-TRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFD--SQ 93 (579)
T ss_dssp CCHHHHHHTTSSCHHHHHHH-HTTTCSSCCHHHHHHHHHHHCSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTS--ST
T ss_pred cCHHHHhhcCCCCHHHHHHH-HHCCCCCCCHHHHHHHHHHHccCCCeEEEEcCCCcHHHHHHHHHHHHHHHhcccc--cc
Confidence 3555554 999999999 56799999999999999999 778999999999999999999999988764321 12
Q ss_pred CCceEEEEcCcHHHHHHHHHHHHHHHhh---cCCcceEEEeCCCchHHHHHHHc-CCCCEEEeCChHHHHHHhhcCCCcC
Q 010357 92 SGTFALVLVPTRELCLQVYEILHKLLHR---FHWIVPGYVMGGENRSKEKARLR-KGISILVATPGRLLDHLKHTSSFLH 167 (512)
Q Consensus 92 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~---~~~~~~~~~~~g~~~~~~~~~~~-~~~~Iiv~Tp~~l~~~l~~~~~~~~ 167 (512)
.+.++||++||++|+.|+.+.+..++.. ..........+|.........+. .+++|+|+||++|.+++.......+
T Consensus 94 ~~~~~lvl~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~ 173 (579)
T 3sqw_A 94 YMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFF 173 (579)
T ss_dssp TSCCEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHC
T ss_pred CCCeEEEEcchHHHHHHHHHHHHHHHhhcccccceEEEEEECCccHHHHHHHHhcCCCCEEEECHHHHHHHHHhcccccc
Confidence 3568999999999999999999998642 23345566778877777666654 4689999999999998876544556
Q ss_pred CceeEEEEcchhHHHhcCchHHHHHHHHHhccCCCCCCCCCCcccccceeEEEEEEecchhhHHHHHhhcCCCeEEccCC
Q 010357 168 TNLRWIIFDEADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDE 247 (512)
Q Consensus 168 ~~~~~lV~DEah~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~ 247 (512)
..+++||+||||++.+++|...+..++..++.... ......+++++|||+++.+..+....+..+..+....
T Consensus 174 ~~~~~lViDEah~l~~~gf~~~~~~i~~~l~~~~~--------~~~~~~~~l~~SAT~~~~v~~~~~~~l~~~~~~~~~~ 245 (579)
T 3sqw_A 174 RFVDYKVLDEADRLLEIGFRDDLETISGILNEKNS--------KSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDT 245 (579)
T ss_dssp TTCCEEEEETHHHHTSTTTHHHHHHHHHHHHHHCS--------SCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEES
T ss_pred ccCCEEEEEChHHhhcCCCHHHHHHHHHHhhhhhc--------ccccCceEEEEeccCChHHHHHHHHHcCCCceEEEee
Confidence 78999999999999999999999999988765221 1112679999999999988888888877766543322
Q ss_pred CcCCCCccccccCCcccchhhhccCCCccccccccccccccceeeeEEEecC-CchHHHHHHHHHhhhc-cccCceEEEE
Q 010357 248 KKLPEDKSHVRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPC-GSRLAVLLSILKHLFD-TEVSQKLVVF 325 (512)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~k~~~l~~~l~~~~~-~~~~~~~lvf 325 (512)
.... .......+.+.+..... ..+...+...+...+. ...+.++|||
T Consensus 246 ~~~~-------------------------------~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iVF 294 (579)
T 3sqw_A 246 VDKN-------------------------------EPEAHERIDQSVVISEKFANSIFAAVEHIKKQIKERDSNYKAIIF 294 (579)
T ss_dssp SCSS-------------------------------SCSSCTTEEEEEEEESSTTHHHHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred cCcc-------------------------------ccccccccceEEEEecchhhhHHHHHHHHHHHHhhcCCCCcEEEE
Confidence 1100 00112233344444432 2333333333333322 2556899999
Q ss_pred eecchhhhhHHHhhhhhcCCCCCCChhHHHhhhhccceeeecCCCCHHHHHHHHHhhhcCCCcEEEeecccccCCCCCCC
Q 010357 326 FSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKV 405 (512)
Q Consensus 326 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~l~g~~~~~~r~~~~~~f~~~~~~vLvaT~~~~~Gldip~~ 405 (512)
|+++..++.+++.|...... +..+..+||+|+..+|..+++.|++|+.+|||||+++++|+|+|++
T Consensus 295 ~~t~~~~~~l~~~L~~~~~~--------------~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLVaT~~~~~GiDip~v 360 (579)
T 3sqw_A 295 APTVKFTSFLCSILKNEFKK--------------DLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNV 360 (579)
T ss_dssp CSSHHHHHHHHHHHHHHHTT--------------TSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECGGGTSSCCCTTC
T ss_pred CCcHHHHHHHHHHHHHhhcC--------------CCcEEEecCCCCHHHHHHHHHHhhcCCCeEEEEcchhhcCCCcccC
Confidence 99999999999999875322 6789999999999999999999999999999999999999999999
Q ss_pred cEEEEeCCCCChhHHHHhhhhcccCCCCccEEEecCccchhHHHHHHHc-CCCCC
Q 010357 406 KCIIQYDSAGEATEYVHRVGRTARLGERGDSLLFLQPVEMDYLQDLEKH-GVSLT 459 (512)
Q Consensus 406 ~~VI~~~~p~s~~~~~Q~~GRagR~g~~g~~~~~~~~~~~~~~~~l~~~-~~~~~ 459 (512)
++||++++|.++..|+||+||+||.|+.|.|++|+.+.+..+++.+++. ++.+.
T Consensus 361 ~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~~~~~~l~~~~~~~~~ 415 (579)
T 3sqw_A 361 HEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELEDAKNIVIA 415 (579)
T ss_dssp CEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEGGGHHHHHHHHHHHCCCCC
T ss_pred CEEEEcCCCCCHHHhhhhccccccCCCCceEEEEEcccHHHHHHHHHHHhCCCcc
Confidence 9999999999999999999999999999999999999999999999874 44443
No 10
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=100.00 E-value=3.1e-53 Score=437.75 Aligned_cols=386 Identities=30% Similarity=0.469 Sum_probs=304.7
Q ss_pred CcccCC----CCHHHHHHHHHhcCCCCCcHHHHHHHHHhh--cCCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCC
Q 010357 19 SFSSLG----LHSTLCDQLRERLGFEAPTKVQAQAIPVIL--SGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSS 92 (512)
Q Consensus 19 ~~~~~~----l~~~~~~~l~~~~~~~~~~~~Q~~~~~~~~--~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~ 92 (512)
+|+++. +++++.+.+ ..+||.+|+|+|.++++.++ .+++++++||||||||++|++|+++.+...... ...
T Consensus 69 ~~~~l~~~~~l~~~l~~~l-~~~g~~~~~~~Q~~~i~~~l~~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~--~~~ 145 (563)
T 3i5x_A 69 TLDSLLEEGVLDKEIHKAI-TRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFD--SQY 145 (563)
T ss_dssp CHHHHHHTTSSCHHHHHHH-HTTCCSSCCHHHHHHHHHHHSSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTS--STT
T ss_pred CHHHHhhcCCCCHHHHHHH-HHCCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCCCccHHHHHHHHHHHHhcccc--ccC
Confidence 455553 999999999 46799999999999999999 678999999999999999999999998764322 123
Q ss_pred CceEEEEcCcHHHHHHHHHHHHHHHhh---cCCcceEEEeCCCchHHHHHHH-cCCCCEEEeCChHHHHHHhhcCCCcCC
Q 010357 93 GTFALVLVPTRELCLQVYEILHKLLHR---FHWIVPGYVMGGENRSKEKARL-RKGISILVATPGRLLDHLKHTSSFLHT 168 (512)
Q Consensus 93 ~~~~lil~Pt~~L~~q~~~~~~~~~~~---~~~~~~~~~~~g~~~~~~~~~~-~~~~~Iiv~Tp~~l~~~l~~~~~~~~~ 168 (512)
+.++||++||++|+.|+++.+..+... ........+.+|.........+ ..+++|+|+||+++.+++.......++
T Consensus 146 ~~~~lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~ 225 (563)
T 3i5x_A 146 MVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFR 225 (563)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCT
T ss_pred CeeEEEEcCcHHHHHHHHHHHHHHHhhccccCceeEEEEECCcCHHHHHHHHhcCCCCEEEECcHHHHHHHHhccccccc
Confidence 568999999999999999999997653 2234456677887777666655 447899999999999988765444567
Q ss_pred ceeEEEEcchhHHHhcCchHHHHHHHHHhccCCCCCCCCCCcccccceeEEEEEEecchhhHHHHHhhcCCCeEEccCCC
Q 010357 169 NLRWIIFDEADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEK 248 (512)
Q Consensus 169 ~~~~lV~DEah~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~ 248 (512)
.+++||+||||++.+++|...+..++..++.... ......+++++|||+++.+..+....+..+..+.....
T Consensus 226 ~~~~lViDEah~l~~~~f~~~~~~i~~~l~~~~~--------~~~~~~~~l~~SAT~~~~v~~~~~~~~~~~~~~~~~~~ 297 (563)
T 3i5x_A 226 FVDYKVLDEADRLLEIGFRDDLETISGILNEKNS--------KSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTV 297 (563)
T ss_dssp TCCEEEEETHHHHTSTTTHHHHHHHHHHHHHHCS--------SCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESS
T ss_pred cceEEEEeCHHHHhccchHHHHHHHHHhhhhccc--------cCccCceEEEEEccCCHHHHHHHHHhcCCCceEEEecc
Confidence 8999999999999999999999999888765221 11226799999999999888888887777665433222
Q ss_pred cCCCCccccccCCcccchhhhccCCCccccccccccccccceeeeEEEecC-CchHHHHHHHHHhhh-ccccCceEEEEe
Q 010357 249 KLPEDKSHVRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPC-GSRLAVLLSILKHLF-DTEVSQKLVVFF 326 (512)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~k~~~l~~~l~~~~-~~~~~~~~lvf~ 326 (512)
... .......+.+.+..... ..+...+...+...+ ....+.++||||
T Consensus 298 ~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iVF~ 346 (563)
T 3i5x_A 298 DKN-------------------------------EPEAHERIDQSVVISEKFANSIFAAVEHIKKQIKERDSNYKAIIFA 346 (563)
T ss_dssp CSS-------------------------------SCSSCTTEEEEEEEESSTTHHHHHHHHHHHHHHHHTTTCCEEEEEC
T ss_pred CCC-------------------------------CccccccCceEEEECchhHhhHHHHHHHHHHHHhhcCCCCcEEEEc
Confidence 100 00112233344444432 233333344333332 235578999999
Q ss_pred ecchhhhhHHHhhhhhcCCCCCCChhHHHhhhhccceeeecCCCCHHHHHHHHHhhhcCCCcEEEeecccccCCCCCCCc
Q 010357 327 STCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVK 406 (512)
Q Consensus 327 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~l~g~~~~~~r~~~~~~f~~~~~~vLvaT~~~~~Gldip~~~ 406 (512)
+++..++.+++.|...... ++.+..+||+|+..+|..+++.|++|+.+|||||+++++|+|+|+++
T Consensus 347 ~s~~~~~~l~~~L~~~~~~--------------~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~ 412 (563)
T 3i5x_A 347 PTVKFTSFLCSILKNEFKK--------------DLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNVH 412 (563)
T ss_dssp SCHHHHHHHHHHHHHHHTT--------------TSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECGGGTSSCCCTTCC
T ss_pred CcHHHHHHHHHHHHHhccC--------------CceEEEecCCCCHHHHHHHHHHHhcCCCCEEEEcchhhcCCCcccCC
Confidence 9999999999999876322 67899999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCChhHHHHhhhhcccCCCCccEEEecCccchhHHHHHHHc-CCCCCc
Q 010357 407 CIIQYDSAGEATEYVHRVGRTARLGERGDSLLFLQPVEMDYLQDLEKH-GVSLTE 460 (512)
Q Consensus 407 ~VI~~~~p~s~~~~~Q~~GRagR~g~~g~~~~~~~~~~~~~~~~l~~~-~~~~~~ 460 (512)
+||+++.|.++..|+||+|||||.|+.|.|++|+.+.+..+++.+.+. ++.+.+
T Consensus 413 ~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~~~~~~l~~~~~~~~~~ 467 (563)
T 3i5x_A 413 EVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELEDAKNIVIAK 467 (563)
T ss_dssp EEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEGGGHHHHHHHHHHHCCCCCE
T ss_pred EEEEECCCCchhhhhhhcCccccCCCCceEEEEEchhHHHHHHHHHHHhCCCccc
Confidence 999999999999999999999999999999999999999999999864 555443
No 11
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=100.00 E-value=7e-55 Score=440.89 Aligned_cols=372 Identities=24% Similarity=0.424 Sum_probs=175.6
Q ss_pred cccccCccCCcccCCCCHHHHHHHHHhcCCCCCcHHHHHHHHHhhcC--CCEEEEccCCChHhHHHHHHHHHHHhhcCCC
Q 010357 10 TVKEIFASCSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSG--RHVLVNAATGTGKTVAYLAPIINHLQSYSPR 87 (512)
Q Consensus 10 ~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~Q~~~~~~~~~~--~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~ 87 (512)
...|.++..+|+++++++++.+.+. .+||..|+++|.++++.++++ ++++++||||||||++|++|++..+...
T Consensus 84 ~~~~~~~~~~f~~~~l~~~l~~~l~-~~g~~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~l~il~~l~~~--- 159 (479)
T 3fmp_B 84 PNSPLYSVKSFEELRLKPQLLQGVY-AMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPA--- 159 (479)
T ss_dssp TTSCCCCCCCSGGGTCCHHHHHHHH-HTTCCSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHHHHHHHTTCCTT---
T ss_pred CCCCccCcCCHHHcCCCHHHHHHHH-HcCCCCCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHHHHHHHHHHhhc---
Confidence 3556777889999999999999996 579999999999999999987 8999999999999999999998876541
Q ss_pred CCCCCCceEEEEcCcHHHHHHHHHHHHHHHhhcCCcceEEEeCCCchHHHHHHHcCCCCEEEeCChHHHHHHhhcCCCcC
Q 010357 88 IDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLH 167 (512)
Q Consensus 88 ~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~ 167 (512)
..+.++||++|+++|+.|+++.+..+........+....++...... .....+|+|+||+++.+++.+.+.+.+
T Consensus 160 ---~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~Ivv~Tp~~l~~~l~~~~~~~~ 233 (479)
T 3fmp_B 160 ---NKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG---QKISEQIVIGTPGTVLDWCSKLKFIDP 233 (479)
T ss_dssp ---SCSCCEEEECSSHHHHHHHHHHHHHHHTTSTTCCEEEESTTCCCCTT---CCCCCSEEEECHHHHHHHHTTSCCCCG
T ss_pred ---CCCCcEEEEeChHHHHHHHHHHHHHHHhhCCCceEEEEeCCcccccc---ccCCCCEEEECchHHHHHHHhcCCcCc
Confidence 12457999999999999999999998876655666666665543221 133568999999999999987677777
Q ss_pred CceeEEEEcchhHHHh-cCchHHHHHHHHHhccCCCCCCCCCCcccccceeEEEEEEecchhhHHHHHhhcCCCeEEccC
Q 010357 168 TNLRWIIFDEADRILE-LGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLD 246 (512)
Q Consensus 168 ~~~~~lV~DEah~l~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~ 246 (512)
.++++||+||||++.+ .++...+..+...++. ..+++++|||+++....+....+..+..+...
T Consensus 234 ~~~~~iViDEah~~~~~~~~~~~~~~i~~~~~~---------------~~~~i~~SAT~~~~~~~~~~~~~~~~~~i~~~ 298 (479)
T 3fmp_B 234 KKIKVFVLDEADVMIATQGHQDQSIRIQRMLPR---------------NCQMLLFSATFEDSVWKFAQKVVPDPNVIKLK 298 (479)
T ss_dssp GGCCEEEECCHHHHHTSTTHHHHHHHHHTTSCT---------------TSEEEEEESCCCHHHHHHHHHHSSSEEEEEEC
T ss_pred ccCCEEEEECHHHHhhcCCcHHHHHHHHhhCCc---------------cceEEEEeCCCCHHHHHHHHHHcCCCeEEecc
Confidence 8999999999999987 5677777777766554 78999999999999988888888888776554
Q ss_pred CCcCCCCccccccCCcccchhhhccCCCccccccccccccccceeeeEEEecC-CchHHHHHHHHHhhhccccCceEEEE
Q 010357 247 EKKLPEDKSHVRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPC-GSRLAVLLSILKHLFDTEVSQKLVVF 325 (512)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~k~~~l~~~l~~~~~~~~~~~~lvf 325 (512)
.... ....+.+.+..+.. ..+...+..++.. ....++|||
T Consensus 299 ~~~~-----------------------------------~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~lvF 339 (479)
T 3fmp_B 299 REEE-----------------------------------TLDTIKQYYVLCSSRDEKFQALCNLYGA----ITIAQAMIF 339 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccc-----------------------------------CcCCceEEEEEeCCHHHHHHHHHHHHhh----ccCCceEEE
Confidence 4321 11222333333322 3444455554443 345799999
Q ss_pred eecchhhhhHHHhhhhhcCCCCCCChhHHHhhhhccceeeecCCCCHHHHHHHHHhhhcCCCcEEEeecccccCCCCCCC
Q 010357 326 FSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKV 405 (512)
Q Consensus 326 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~l~g~~~~~~r~~~~~~f~~~~~~vLvaT~~~~~Gldip~~ 405 (512)
|+++..++.+++.|... +..+..+||+|+..+|..+++.|++|+.+|||||+++++|+|+|++
T Consensus 340 ~~s~~~~~~l~~~L~~~-----------------~~~v~~lh~~~~~~~R~~~~~~f~~g~~~iLv~T~~~~~GlDip~v 402 (479)
T 3fmp_B 340 CHTRKTASWLAAELSKE-----------------GHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQV 402 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred eCcHHHHHHHHHHHHhC-----------------CccEEEecCCCCHHHHHHHHHHHHcCCCcEEEEccccccCCccccC
Confidence 99999999999999887 7789999999999999999999999999999999999999999999
Q ss_pred cEEEEeCCCC------ChhHHHHhhhhcccCCCCccEEEecCccc-hhHHHHHHHc-CCCCCccC
Q 010357 406 KCIIQYDSAG------EATEYVHRVGRTARLGERGDSLLFLQPVE-MDYLQDLEKH-GVSLTEYP 462 (512)
Q Consensus 406 ~~VI~~~~p~------s~~~~~Q~~GRagR~g~~g~~~~~~~~~~-~~~~~~l~~~-~~~~~~~~ 462 (512)
++||+++.|. +...|+||+||+||.|+.|.+++|+++.+ ..+++.+.+. +..+.+++
T Consensus 403 ~~VI~~d~p~~~~~~~s~~~~~Qr~GRagR~g~~G~~i~~~~~~~~~~~~~~i~~~~~~~~~~l~ 467 (479)
T 3fmp_B 403 SVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQEHFNKKIERLD 467 (479)
T ss_dssp -----------------------------------------------------------------
T ss_pred CEEEEecCCCCCccCCCHHHHHHHhcccccCCCCceEEEEEcCcchHHHHHHHHHHhCCCceECC
Confidence 9999999994 66899999999999999999999998765 6677776653 44444443
No 12
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=100.00 E-value=2.6e-52 Score=412.78 Aligned_cols=354 Identities=25% Similarity=0.476 Sum_probs=287.2
Q ss_pred cCCcccCCCCHHHHHHHHHhcCCCCCcHHHHHHHHHhhcC--CCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCc
Q 010357 17 SCSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSG--RHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGT 94 (512)
Q Consensus 17 ~~~~~~~~l~~~~~~~l~~~~~~~~~~~~Q~~~~~~~~~~--~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~ 94 (512)
..+|+++++++++.+.+. .+||..|+++|.++++.++++ +++++++|||+|||++|+++++..+... ..+.
T Consensus 4 ~~~f~~~~l~~~l~~~l~-~~~~~~~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~------~~~~ 76 (395)
T 3pey_A 4 AKSFDELGLAPELLKGIY-AMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNPE------DASP 76 (395)
T ss_dssp CCSSTTSCCCHHHHHHHH-HTTCCSCCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHHHHHHHHCCTT------CCSC
T ss_pred ccCHhhCCCCHHHHHHHH-HCCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHhccC------CCCc
Confidence 368999999999999995 579999999999999999988 8999999999999999999999876542 2356
Q ss_pred eEEEEcCcHHHHHHHHHHHHHHHhhcCCcceEEEeCCCchHHHHHHHcCCCCEEEeCChHHHHHHhhcCCCcCCceeEEE
Q 010357 95 FALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWII 174 (512)
Q Consensus 95 ~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lV 174 (512)
+++|++|+++|+.|+++.+..+....+ .......++..... ....++|+|+||+++.+.+.. ....+.++++||
T Consensus 77 ~~lil~P~~~L~~q~~~~~~~~~~~~~-~~~~~~~~~~~~~~----~~~~~~iiv~T~~~l~~~~~~-~~~~~~~~~~iI 150 (395)
T 3pey_A 77 QAICLAPSRELARQTLEVVQEMGKFTK-ITSQLIVPDSFEKN----KQINAQVIVGTPGTVLDLMRR-KLMQLQKIKIFV 150 (395)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTTSC-CCEEEESTTSSCTT----SCBCCSEEEECHHHHHHHHHT-TCBCCTTCCEEE
T ss_pred cEEEECCCHHHHHHHHHHHHHHhcccC-eeEEEEecCchhhh----ccCCCCEEEEcHHHHHHHHHc-CCcccccCCEEE
Confidence 799999999999999999999876544 33444444433211 133579999999999998876 555677899999
Q ss_pred EcchhHHHh-cCchHHHHHHHHHhccCCCCCCCCCCcccccceeEEEEEEecchhhHHHHHhhcCCCeEEccCCCcCCCC
Q 010357 175 FDEADRILE-LGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLPED 253 (512)
Q Consensus 175 ~DEah~l~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (512)
+||||++.+ .++...+..+...++. ..+++++|||+++....+....+..+..+.......
T Consensus 151 iDEah~~~~~~~~~~~~~~~~~~~~~---------------~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~--- 212 (395)
T 3pey_A 151 LDEADNMLDQQGLGDQCIRVKRFLPK---------------DTQLVLFSATFADAVRQYAKKIVPNANTLELQTNEV--- 212 (395)
T ss_dssp EETHHHHHHSTTHHHHHHHHHHTSCT---------------TCEEEEEESCCCHHHHHHHHHHSCSCEEECCCGGGC---
T ss_pred EEChhhhcCccccHHHHHHHHHhCCC---------------CcEEEEEEecCCHHHHHHHHHhCCCCeEEEcccccc---
Confidence 999999987 5677777777776655 789999999999988888888877776654433321
Q ss_pred ccccccCCcccchhhhccCCCccccccccccccccceeeeEEEecC-CchHHHHHHHHHhhhccccCceEEEEeecchhh
Q 010357 254 KSHVRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPC-GSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAV 332 (512)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~k~~~l~~~l~~~~~~~~~~~~lvf~~~~~~~ 332 (512)
....+.+.+..... ..+...+..++ ....++++||||++++.+
T Consensus 213 --------------------------------~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~~~~~~lvf~~~~~~~ 256 (395)
T 3pey_A 213 --------------------------------NVDAIKQLYMDCKNEADKFDVLTELY----GLMTIGSSIIFVATKKTA 256 (395)
T ss_dssp --------------------------------SCTTEEEEEEECSSHHHHHHHHHHHH----TTTTSSEEEEECSCHHHH
T ss_pred --------------------------------ccccccEEEEEcCchHHHHHHHHHHH----HhccCCCEEEEeCCHHHH
Confidence 12233344444322 23334443333 334568999999999999
Q ss_pred hhHHHhhhhhcCCCCCCChhHHHhhhhccceeeecCCCCHHHHHHHHHhhhcCCCcEEEeecccccCCCCCCCcEEEEeC
Q 010357 333 DFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYD 412 (512)
Q Consensus 333 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~l~g~~~~~~r~~~~~~f~~~~~~vLvaT~~~~~Gldip~~~~VI~~~ 412 (512)
+.+++.|+.. +..+..+||+|+..+|..+++.|++|+.+|||||+++++|+|+|++++||+++
T Consensus 257 ~~l~~~l~~~-----------------~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~~~ 319 (395)
T 3pey_A 257 NVLYGKLKSE-----------------GHEVSILHGDLQTQERDRLIDDFREGRSKVLITTNVLARGIDIPTVSMVVNYD 319 (395)
T ss_dssp HHHHHHHHHT-----------------TCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECGGGSSSCCCTTEEEEEESS
T ss_pred HHHHHHHHhc-----------------CCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECChhhcCCCcccCCEEEEcC
Confidence 9999999887 77899999999999999999999999999999999999999999999999999
Q ss_pred CCC------ChhHHHHhhhhcccCCCCccEEEecCccc-hhHHHHHHHc
Q 010357 413 SAG------EATEYVHRVGRTARLGERGDSLLFLQPVE-MDYLQDLEKH 454 (512)
Q Consensus 413 ~p~------s~~~~~Q~~GRagR~g~~g~~~~~~~~~~-~~~~~~l~~~ 454 (512)
.|. ++..|+||+||+||.|+.|.+++++++.+ ...++.+++.
T Consensus 320 ~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~i~~~ 368 (395)
T 3pey_A 320 LPTLANGQADPATYIHRIGRTGRFGRKGVAISFVHDKNSFNILSAIQKY 368 (395)
T ss_dssp CCBCTTSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHHHHHHHHHHHHH
T ss_pred CCCCCcCCCCHHHhhHhccccccCCCCceEEEEEechHHHHHHHHHHHH
Confidence 999 99999999999999999999999998754 5566666653
No 13
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=100.00 E-value=5.2e-54 Score=424.73 Aligned_cols=365 Identities=29% Similarity=0.491 Sum_probs=172.7
Q ss_pred cCCcccCCCCHHHHHHHHHhcCCCCCcHHHHHHHHHhhcCCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceE
Q 010357 17 SCSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFA 96 (512)
Q Consensus 17 ~~~~~~~~l~~~~~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (512)
..+|+++++++++.+.+. .+||.+|+++|+++++.+++++++++++|||+|||++|++|++..+... ..+.++
T Consensus 20 ~~~f~~~~l~~~l~~~l~-~~g~~~~~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~l~~~------~~~~~~ 92 (394)
T 1fuu_A 20 VYKFDDMELDENLLRGVF-GYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTS------VKAPQA 92 (394)
T ss_dssp CCSSGGGCCCHHHHHHHH-HHTCCSCCHHHHHHHHHHHHTCCEEECCCSSHHHHHHHHHHHHHHCCTT------CCSCCE
T ss_pred cCChhhcCCCHHHHHHHH-HcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhhcc------CCCCCE
Confidence 457999999999999995 5699999999999999999999999999999999999999999876542 235679
Q ss_pred EEEcCcHHHHHHHHHHHHHHHhhcCCcceEEEeCCCchHHHHHHHcCCCCEEEeCChHHHHHHhhcCCCcCCceeEEEEc
Q 010357 97 LVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFD 176 (512)
Q Consensus 97 lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lV~D 176 (512)
+|++|+++|+.|+.+.+..+....+ ..+..+.|+.........+. .++|+|+||+++.+.+.. ..+.+.++++||+|
T Consensus 93 lil~P~~~L~~q~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~-~~~i~v~T~~~l~~~~~~-~~~~~~~~~~vIiD 169 (394)
T 1fuu_A 93 LMLAPTRELALQIQKVVMALAFHMD-IKVHACIGGTSFVEDAEGLR-DAQIVVGTPGRVFDNIQR-RRFRTDKIKMFILD 169 (394)
T ss_dssp EEECSSHHHHHHHHHHHHHHTTTSC-CCEEEECSSCCHHHHHHHHH-HCSEEEECHHHHHHHHHT-TSSCCTTCCEEEEE
T ss_pred EEEcCCHHHHHHHHHHHHHHhccCC-eeEEEEeCCCchHHHHhhcC-CCCEEEECHHHHHHHHHh-CCcchhhCcEEEEE
Confidence 9999999999999999999876554 45566677766655544443 679999999999998876 44556789999999
Q ss_pred chhHHHhcCchHHHHHHHHHhccCCCCCCCCCCcccccceeEEEEEEecchhhHHHHHhhcCCCeEEccCCCcCCCCccc
Q 010357 177 EADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLPEDKSH 256 (512)
Q Consensus 177 Eah~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (512)
|||++.+.++...+..++..++. ..+++++|||+++........++..+..+........
T Consensus 170 Eah~~~~~~~~~~~~~~~~~~~~---------------~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 229 (394)
T 1fuu_A 170 EADEMLSSGFKEQIYQIFTLLPP---------------TTQVVLLSATMPNDVLEVTTKFMRNPVRILVKKDELT----- 229 (394)
T ss_dssp THHHHHHTTCHHHHHHHHHHSCT---------------TCEEEEECSSCCHHHHHHHHHHCCSCEEEEECC---------
T ss_pred ChHHhhCCCcHHHHHHHHHhCCC---------------CceEEEEEEecCHHHHHHHHHhcCCCeEEEecCcccc-----
Confidence 99999999999999999888765 7899999999999888777777777766544332211
Q ss_pred cccCCcccchhhhccCCCccccccccccccccceeeeEEEecCC-chHHHHHHHHHhhhccccCceEEEEeecchhhhhH
Q 010357 257 VRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCG-SRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFH 335 (512)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~k~~~l~~~l~~~~~~~~~~~~lvf~~~~~~~~~l 335 (512)
...+.+.+...... .+...+..++.. ..++++||||++++.++.+
T Consensus 230 ------------------------------~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~lVf~~~~~~~~~l 275 (394)
T 1fuu_A 230 ------------------------------LEGIKQFYVNVEEEEYKYECLTDLYDS----ISVTQAVIFCNTRRKVEEL 275 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ------------------------------CCCceEEEEEcCchhhHHHHHHHHHhc----CCCCcEEEEECCHHHHHHH
Confidence 11122222222222 244444444432 3467999999999999999
Q ss_pred HHhhhhhcCCCCCCChhHHHhhhhccceeeecCCCCHHHHHHHHHhhhcCCCcEEEeecccccCCCCCCCcEEEEeCCCC
Q 010357 336 YSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAG 415 (512)
Q Consensus 336 ~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~l~g~~~~~~r~~~~~~f~~~~~~vLvaT~~~~~Gldip~~~~VI~~~~p~ 415 (512)
++.|... +..+..+||+|+..+|..+++.|++|+.+|||||+++++|+|+|++++||+++.|.
T Consensus 276 ~~~L~~~-----------------~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gldi~~~~~Vi~~~~p~ 338 (394)
T 1fuu_A 276 TTKLRND-----------------KFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPA 338 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHc-----------------CCeEEEeeCCCCHHHHHHHHHHHHCCCCcEEEECChhhcCCCcccCCEEEEeCCCC
Confidence 9999876 77899999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHhhhhcccCCCCccEEEecCccchhHHHHHHHc-CCCCCccC
Q 010357 416 EATEYVHRVGRTARLGERGDSLLFLQPVEMDYLQDLEKH-GVSLTEYP 462 (512)
Q Consensus 416 s~~~~~Q~~GRagR~g~~g~~~~~~~~~~~~~~~~l~~~-~~~~~~~~ 462 (512)
++..|+||+||+||.|++|.|++++++.+...++.+.+. +..+++++
T Consensus 339 s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 386 (394)
T 1fuu_A 339 NKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFYSTQIEELP 386 (394)
T ss_dssp ------------------------------------------------
T ss_pred CHHHHHHHcCcccCCCCCceEEEEEchhHHHHHHHHHHHhCCcccccC
Confidence 999999999999999999999999999998888887763 44444443
No 14
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=1.7e-50 Score=390.86 Aligned_cols=332 Identities=32% Similarity=0.512 Sum_probs=273.5
Q ss_pred CCHHHHHHHHHhcCCCCCcHHHHHHHHHhhcCCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcHH
Q 010357 25 LHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRE 104 (512)
Q Consensus 25 l~~~~~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~ 104 (512)
|++++.+.+. .+||.+|+++|+++++.+++++++++.+|||+|||++|++|+++. +.+++|++|+++
T Consensus 1 l~~~i~~~l~-~~g~~~l~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~------------~~~~liv~P~~~ 67 (337)
T 2z0m_A 1 MNEKIEQAIR-EMGFKNFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPILEL------------GMKSLVVTPTRE 67 (337)
T ss_dssp CCHHHHHHHH-HTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHH------------TCCEEEECSSHH
T ss_pred CCHHHHHHHH-HcCCCCCCHHHHHHHHHHhcCCCEEEEcCCCCcHHHHHHHHHHhh------------cCCEEEEeCCHH
Confidence 5789999995 679999999999999999999999999999999999999998774 556999999999
Q ss_pred HHHHHHHHHHHHHhhcCCcceEEEeCCCchHHHHHHHcCCCCEEEeCChHHHHHHhhcCCCcCCceeEEEEcchhHHHhc
Q 010357 105 LCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILEL 184 (512)
Q Consensus 105 L~~q~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lV~DEah~l~~~ 184 (512)
|+.|+.+.+..+....+ ..+....++.........+. .++|+|+||+++.+.+.. ....+.++++||+||||++.++
T Consensus 68 L~~q~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~i~v~T~~~l~~~~~~-~~~~~~~~~~iViDEah~~~~~ 144 (337)
T 2z0m_A 68 LTRQVASHIRDIGRYMD-TKVAEVYGGMPYKAQINRVR-NADIVVATPGRLLDLWSK-GVIDLSSFEIVIIDEADLMFEM 144 (337)
T ss_dssp HHHHHHHHHHHHTTTSC-CCEEEECTTSCHHHHHHHHT-TCSEEEECHHHHHHHHHT-TSCCGGGCSEEEEESHHHHHHT
T ss_pred HHHHHHHHHHHHhhhcC-CcEEEEECCcchHHHHhhcC-CCCEEEECHHHHHHHHHc-CCcchhhCcEEEEEChHHhhcc
Confidence 99999999999876554 45566777777666655554 489999999999998766 4455678999999999999999
Q ss_pred CchHHHHHHHHHhccCCCCCCCCCCcccccceeEEEEEEecchhhHHHHHhhcCCCeEEccCCCcCCCCccccccCCccc
Q 010357 185 GFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLPEDKSHVRFGSLES 264 (512)
Q Consensus 185 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (512)
++...+..++...+. ..+++++|||+++........++.++..+....
T Consensus 145 ~~~~~~~~~~~~~~~---------------~~~~~~~SAT~~~~~~~~~~~~~~~~~~~~~~~----------------- 192 (337)
T 2z0m_A 145 GFIDDIKIILAQTSN---------------RKITGLFSATIPEEIRKVVKDFITNYEEIEACI----------------- 192 (337)
T ss_dssp TCHHHHHHHHHHCTT---------------CSEEEEEESCCCHHHHHHHHHHSCSCEEEECSG-----------------
T ss_pred ccHHHHHHHHhhCCc---------------ccEEEEEeCcCCHHHHHHHHHhcCCceeeeccc-----------------
Confidence 999999999887765 778899999999988777777666655432110
Q ss_pred chhhhccCCCccccccccccccccceeeeEEEecCCchHHHHHHHHHhhhccccCceEEEEeecchhhhhHHHhhhhhcC
Q 010357 265 DVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQW 344 (512)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~ 344 (512)
....+.+.+.......+ .....+. ...++++||||++++.++.+++.|.
T Consensus 193 ---------------------~~~~~~~~~~~~~~~~~--~~~~~~~----~~~~~~~lvf~~~~~~~~~l~~~l~---- 241 (337)
T 2z0m_A 193 ---------------------GLANVEHKFVHVKDDWR--SKVQALR----ENKDKGVIVFVRTRNRVAKLVRLFD---- 241 (337)
T ss_dssp ---------------------GGGGEEEEEEECSSSSH--HHHHHHH----TCCCSSEEEECSCHHHHHHHHTTCT----
T ss_pred ---------------------ccCCceEEEEEeChHHH--HHHHHHH----hCCCCcEEEEEcCHHHHHHHHHHhh----
Confidence 11223334444433332 2223333 3457899999999999999988875
Q ss_pred CCCCCChhHHHhhhhccceeeecCCCCHHHHHHHHHhhhcCCCcEEEeecccccCCCCCCCcEEEEeCCCCChhHHHHhh
Q 010357 345 SPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRV 424 (512)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~v~~l~g~~~~~~r~~~~~~f~~~~~~vLvaT~~~~~Gldip~~~~VI~~~~p~s~~~~~Q~~ 424 (512)
.+..+||+++..+|..+++.|++|+.+|||||+++++|+|+|++++||++++|.++..|+||+
T Consensus 242 -----------------~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~~~~~~s~~~~~Q~~ 304 (337)
T 2z0m_A 242 -----------------NAIELRGDLPQSVRNRNIDAFREGEYDMLITTDVASRGLDIPLVEKVINFDAPQDLRTYIHRI 304 (337)
T ss_dssp -----------------TEEEECTTSCHHHHHHHHHHHHTTSCSEEEECHHHHTTCCCCCBSEEEESSCCSSHHHHHHHH
T ss_pred -----------------hhhhhcCCCCHHHHHHHHHHHHcCCCcEEEEcCccccCCCccCCCEEEEecCCCCHHHhhHhc
Confidence 356789999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcccCCCCccEEEecCccchhHHHHHHH
Q 010357 425 GRTARLGERGDSLLFLQPVEMDYLQDLEK 453 (512)
Q Consensus 425 GRagR~g~~g~~~~~~~~~~~~~~~~l~~ 453 (512)
||+||.|++|.+++|+. .+...++.+++
T Consensus 305 GR~gR~g~~g~~~~~~~-~~~~~~~~i~~ 332 (337)
T 2z0m_A 305 GRTGRMGRKGEAITFIL-NEYWLEKEVKK 332 (337)
T ss_dssp TTBCGGGCCEEEEEEES-SCHHHHHHHC-
T ss_pred CccccCCCCceEEEEEe-CcHHHHHHHHH
Confidence 99999999999999999 77777777654
No 15
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=100.00 E-value=2e-50 Score=412.25 Aligned_cols=344 Identities=17% Similarity=0.251 Sum_probs=263.1
Q ss_pred CcccCCCCHHHHHHHHHhcCCCCCcHHHHHHHHHhhcCCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEE
Q 010357 19 SFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALV 98 (512)
Q Consensus 19 ~~~~~~l~~~~~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~li 98 (512)
.++++++++.+.+.|++.|||..|||+|+++++.+++|+++++.+|||+|||++|++|++.. ..++||
T Consensus 22 ~~~~~~l~~~l~~~L~~~fg~~~~rp~Q~~~i~~il~g~d~lv~~pTGsGKTl~~~lpal~~------------~g~~lV 89 (591)
T 2v1x_A 22 NKEDFPWSGKVKDILQNVFKLEKFRPLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPALCS------------DGFTLV 89 (591)
T ss_dssp CCSCSTTHHHHHHHHHHTSCCCSCCTTHHHHHHHHHTTCCEEEECCTTSCTTHHHHHHHHTS------------SSEEEE
T ss_pred ccccCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEEECCCChHHHHHHHHHHHc------------CCcEEE
Confidence 44568999999999988899999999999999999999999999999999999999999752 457999
Q ss_pred EcCcHHHHHHHHHHHHHHHhhcCCcceEEEeCCCchHHHHH---HH---cCCCCEEEeCChHHHH---HHhhc-CCCcCC
Q 010357 99 LVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKA---RL---RKGISILVATPGRLLD---HLKHT-SSFLHT 168 (512)
Q Consensus 99 l~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~---~~~~~Iiv~Tp~~l~~---~l~~~-~~~~~~ 168 (512)
++|+++|+.|+.+.+..+ + .....+.++........ .+ ....+|+|+||++|.. ++... ....+.
T Consensus 90 isP~~~L~~q~~~~l~~~----g-i~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~~~~~~~ 164 (591)
T 2v1x_A 90 ICPLISLMEDQLMVLKQL----G-ISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLEKAYEAR 164 (591)
T ss_dssp ECSCHHHHHHHHHHHHHH----T-CCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHHHHHHHHHHHHTT
T ss_pred EeCHHHHHHHHHHHHHhc----C-CcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChhHhhccHHHHHHHHhhhhcc
Confidence 999999999999999887 2 34455666655443322 22 4568999999998742 22111 123456
Q ss_pred ceeEEEEcchhHHHhcC--chHHHHH--HHHHhccCCCCCCCCCCcccccceeEEEEEEecchhhHHHHHhhcCCC--eE
Q 010357 169 NLRWIIFDEADRILELG--FGKEIEE--ILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETP--VL 242 (512)
Q Consensus 169 ~~~~lV~DEah~l~~~~--~~~~~~~--i~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~--~~ 242 (512)
++++|||||||++.+++ |...+.. .+..... ..+++++|||+++.........+..+ ..
T Consensus 165 ~i~~iViDEAH~is~~g~dfr~~~~~l~~l~~~~~---------------~~~ii~lSAT~~~~v~~~i~~~l~~~~~~~ 229 (591)
T 2v1x_A 165 RFTRIAVDEVHCCSQWGHDFRPDYKALGILKRQFP---------------NASLIGLTATATNHVLTDAQKILCIEKCFT 229 (591)
T ss_dssp CEEEEEEETGGGGSTTCTTCCGGGGGGGHHHHHCT---------------TSEEEEEESSCCHHHHHHHHHHTTCCSCEE
T ss_pred CCcEEEEECcccccccccccHHHHHHHHHHHHhCC---------------CCcEEEEecCCCHHHHHHHHHHhCCCCcEE
Confidence 89999999999999887 5554443 2222222 67899999999987665555444322 22
Q ss_pred EccCCCcCCCCccccccCCcccchhhhccCCCccccccccccccccceeeeEEEecC--CchHHHHHHHHHhhhccccCc
Q 010357 243 IGLDEKKLPEDKSHVRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPC--GSRLAVLLSILKHLFDTEVSQ 320 (512)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~k~~~l~~~l~~~~~~~~~~ 320 (512)
+..... ..++...+..... ..+...+.+++.. ...+.
T Consensus 230 ~~~~~~--------------------------------------r~nl~~~v~~~~~~~~~~~~~l~~~l~~---~~~~~ 268 (591)
T 2v1x_A 230 FTASFN--------------------------------------RPNLYYEVRQKPSNTEDFIEDIVKLING---RYKGQ 268 (591)
T ss_dssp EECCCC--------------------------------------CTTEEEEEEECCSSHHHHHHHHHHHHTT---TTTTC
T ss_pred EecCCC--------------------------------------CcccEEEEEeCCCcHHHHHHHHHHHHHH---hccCC
Confidence 211100 0111111111111 1223334444332 23568
Q ss_pred eEEEEeecchhhhhHHHhhhhhcCCCCCCChhHHHhhhhccceeeecCCCCHHHHHHHHHhhhcCCCcEEEeecccccCC
Q 010357 321 KLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGL 400 (512)
Q Consensus 321 ~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~l~g~~~~~~r~~~~~~f~~~~~~vLvaT~~~~~Gl 400 (512)
++||||++++.++.+++.|... ++.+..+||+|+..+|..+++.|++|+.+|||||+++++|+
T Consensus 269 ~~IVf~~sr~~~e~la~~L~~~-----------------g~~~~~~h~~l~~~~R~~~~~~F~~g~~~VlVAT~a~~~GI 331 (591)
T 2v1x_A 269 SGIIYCFSQKDSEQVTVSLQNL-----------------GIHAGAYHANLEPEDKTTVHRKWSANEIQVVVATVAFGMGI 331 (591)
T ss_dssp EEEEECSSHHHHHHHHHHHHHT-----------------TCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEECTTSCTTC
T ss_pred CeEEEeCcHHHHHHHHHHHHHC-----------------CCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhhcCC
Confidence 9999999999999999999887 88899999999999999999999999999999999999999
Q ss_pred CCCCCcEEEEeCCCCChhHHHHhhhhcccCCCCccEEEecCccchhHHHHHH
Q 010357 401 DFPKVKCIIQYDSAGEATEYVHRVGRTARLGERGDSLLFLQPVEMDYLQDLE 452 (512)
Q Consensus 401 dip~~~~VI~~~~p~s~~~~~Q~~GRagR~g~~g~~~~~~~~~~~~~~~~l~ 452 (512)
|+|++++||++++|.|...|+||+|||||.|++|.|++++++.|...++.+.
T Consensus 332 D~p~V~~VI~~~~p~s~~~y~Qr~GRaGR~G~~g~~i~l~~~~D~~~~~~~~ 383 (591)
T 2v1x_A 332 DKPDVRFVIHHSMSKSMENYYQESGRAGRDDMKADCILYYGFGDIFRISSMV 383 (591)
T ss_dssp CCSCEEEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEECHHHHHHHHHHT
T ss_pred CcccccEEEEeCCCCCHHHHHHHhccCCcCCCCceEEEEEChHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999998877666654
No 16
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=100.00 E-value=4.6e-50 Score=406.02 Aligned_cols=342 Identities=20% Similarity=0.312 Sum_probs=269.3
Q ss_pred CCcccCCCCHHHHHHHHHhcCCCCCcHHHHHHHHHhhcCCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEE
Q 010357 18 CSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFAL 97 (512)
Q Consensus 18 ~~~~~~~l~~~~~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~l 97 (512)
.+|+++++++++.+.|++.|||.+|+++|.++++.+++|+++++.+|||+|||++|++|++.. ...+|
T Consensus 2 ~~fe~l~L~~~~~~~l~~~~g~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~~------------~g~~l 69 (523)
T 1oyw_A 2 AQAEVLNLESGAKQVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLL------------NGLTV 69 (523)
T ss_dssp CCCCCSSHHHHHHHHHHHTTCCSSCCTTHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHS------------SSEEE
T ss_pred CChhhCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHHh------------CCCEE
Confidence 579999999999999988799999999999999999999999999999999999999998753 45699
Q ss_pred EEcCcHHHHHHHHHHHHHHHhhcCCcceEEEeCCCchHHHH---H-HHcCCCCEEEeCChHHHHHHhhcCCCcCCceeEE
Q 010357 98 VLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEK---A-RLRKGISILVATPGRLLDHLKHTSSFLHTNLRWI 173 (512)
Q Consensus 98 il~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~---~-~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~l 173 (512)
|++|+++|+.|+.+.+..+ + .....+.++....... . ......+|+++||+++...... ..+...++++|
T Consensus 70 vi~P~~aL~~q~~~~l~~~----g-i~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~~-~~l~~~~~~~v 143 (523)
T 1oyw_A 70 VVSPLISLMKDQVDQLQAN----G-VAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFL-EHLAHWNPVLL 143 (523)
T ss_dssp EECSCHHHHHHHHHHHHHT----T-CCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHH-HHHTTSCEEEE
T ss_pred EECChHHHHHHHHHHHHHc----C-CcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhChHHH-HHHhhCCCCEE
Confidence 9999999999999998875 2 3444555555443322 2 2235589999999999532111 11223589999
Q ss_pred EEcchhHHHhcC--chHHHHHH---HHHhccCCCCCCCCCCcccccceeEEEEEEecchhhHH-HHH-hhcCCCeEEccC
Q 010357 174 IFDEADRILELG--FGKEIEEI---LDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNH-LAK-ISLETPVLIGLD 246 (512)
Q Consensus 174 V~DEah~l~~~~--~~~~~~~i---~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~-~~~-~~~~~~~~~~~~ 246 (512)
|+||||++.+++ |...+..+ ...++ ..+++++|||+++.... +.. ..+.++..+...
T Consensus 144 ViDEaH~i~~~g~~fr~~~~~l~~l~~~~~----------------~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~ 207 (523)
T 1oyw_A 144 AVDEAHCISQWGHDFRPEYAALGQLRQRFP----------------TLPFMALTATADDTTRQDIVRLLGLNDPLIQISS 207 (523)
T ss_dssp EESSGGGGCTTSSCCCHHHHGGGGHHHHCT----------------TSCEEEEESCCCHHHHHHHHHHHTCCSCEEEECC
T ss_pred EEeCccccCcCCCccHHHHHHHHHHHHhCC----------------CCCEEEEeCCCCHHHHHHHHHHhCCCCCeEEeCC
Confidence 999999998876 54444433 33332 67899999999876544 333 223444332111
Q ss_pred CCcCCCCccccccCCcccchhhhccCCCccccccccccccccceeeeEEEecCCchHHHHHHHHHhhhccccCceEEEEe
Q 010357 247 EKKLPEDKSHVRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFF 326 (512)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~lvf~ 326 (512)
.. ..++ .+.......+...+.+.+.. ..+.++||||
T Consensus 208 ~~--------------------------------------r~~l--~~~v~~~~~~~~~l~~~l~~----~~~~~~IVf~ 243 (523)
T 1oyw_A 208 FD--------------------------------------RPNI--RYMLMEKFKPLDQLMRYVQE----QRGKSGIIYC 243 (523)
T ss_dssp CC--------------------------------------CTTE--EEEEEECSSHHHHHHHHHHH----TTTCCEEEEC
T ss_pred CC--------------------------------------CCce--EEEEEeCCCHHHHHHHHHHh----cCCCcEEEEe
Confidence 11 0111 22233345667777777764 3567999999
Q ss_pred ecchhhhhHHHhhhhhcCCCCCCChhHHHhhhhccceeeecCCCCHHHHHHHHHhhhcCCCcEEEeecccccCCCCCCCc
Q 010357 327 STCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVK 406 (512)
Q Consensus 327 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~l~g~~~~~~r~~~~~~f~~~~~~vLvaT~~~~~Gldip~~~ 406 (512)
++++.++.+++.|... ++.+..+||+|+.++|..+++.|++|+.+|||||+++++|+|+|+++
T Consensus 244 ~sr~~~e~l~~~L~~~-----------------g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlVaT~a~~~GiD~p~v~ 306 (523)
T 1oyw_A 244 NSRAKVEDTAARLQSK-----------------GISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKPNVR 306 (523)
T ss_dssp SSHHHHHHHHHHHHHT-----------------TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECTTSCTTTCCTTCC
T ss_pred CCHHHHHHHHHHHHHC-----------------CCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhhCCCCccCcc
Confidence 9999999999999887 78899999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCChhHHHHhhhhcccCCCCccEEEecCccchhHHHHHHHc
Q 010357 407 CIIQYDSAGEATEYVHRVGRTARLGERGDSLLFLQPVEMDYLQDLEKH 454 (512)
Q Consensus 407 ~VI~~~~p~s~~~~~Q~~GRagR~g~~g~~~~~~~~~~~~~~~~l~~~ 454 (512)
+||+++.|.|+..|+||+|||||.|++|.|++++++.|...++.+...
T Consensus 307 ~VI~~~~p~s~~~y~Qr~GRaGR~g~~~~~~l~~~~~d~~~~~~~~~~ 354 (523)
T 1oyw_A 307 FVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRCLEE 354 (523)
T ss_dssp EEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEECHHHHHHHHHHHHT
T ss_pred EEEEECCCCCHHHHHHHhccccCCCCCceEEEEeCHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999988777776654
No 17
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.1e-49 Score=403.56 Aligned_cols=361 Identities=22% Similarity=0.384 Sum_probs=245.3
Q ss_pred CcccCCCCHHHHHHHHHhcCCCCCcHHHHHHHHHhhcC--CCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceE
Q 010357 19 SFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSG--RHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFA 96 (512)
Q Consensus 19 ~~~~~~l~~~~~~~l~~~~~~~~~~~~Q~~~~~~~~~~--~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (512)
.|...++++++.+.+.+ .|+..|+++|+++++.++++ +++++++|||||||++|+++++..+.... .+.++
T Consensus 120 ~~~~~~l~~~~~~~l~~-~g~~~p~~~Q~~ai~~i~~~~~~~~ll~apTGsGKT~~~~~~il~~l~~~~------~~~~v 192 (508)
T 3fho_A 120 XXXXXXXXXXXXXXXXX-XXXXXXXKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVDASV------PKPQA 192 (508)
T ss_dssp --------------------CEECCCTTSSSHHHHHCSSCCCEEEECCSSTTSHHHHHHHHHHHSCTTC------CSCCE
T ss_pred ccccccccccccccccc-ccccCcHHHHHHHHHHHHcCCCCCEEEECCCCccHHHHHHHHHHHHHHhCC------CCceE
Confidence 35566788899999954 59999999999999999987 99999999999999999999998875521 25579
Q ss_pred EEEcCcHHHHHHHHHHHHHHHhhcCCcceEEEeCCCchHHHHHHHcCCCCEEEeCChHHHHHHhhcCCCcCCceeEEEEc
Q 010357 97 LVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFD 176 (512)
Q Consensus 97 lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lV~D 176 (512)
||++|+++|+.|+.+.+..++...+. ......++.. .......++|+|+||+++.+.+.. ..+.+.++++||+|
T Consensus 193 Lvl~P~~~L~~Q~~~~~~~~~~~~~~-~~~~~~~~~~----~~~~~~~~~Ivv~T~~~l~~~l~~-~~~~~~~~~lIIiD 266 (508)
T 3fho_A 193 ICLAPSRELARQIMDVVTEMGKYTEV-KTAFGIKDSV----PKGAKIDAQIVIGTPGTVMDLMKR-RQLDARDIKVFVLD 266 (508)
T ss_dssp EEECSCHHHHHHHHHHHHHHSTTSSC-CEEC--------------CCCCSEEEECHHHHHHHHHT-TCSCCTTCCEEEEC
T ss_pred EEEECcHHHHHHHHHHHHHhCCccCe-eEEEEeCCcc----cccccCCCCEEEECHHHHHHHHHc-CCccccCCCEEEEe
Confidence 99999999999999999998764432 2122222211 112234689999999999998876 45567789999999
Q ss_pred chhHHHh-cCchHHHHHHHHHhccCCCCCCCCCCcccccceeEEEEEEecchhhHHHHHhhcCCCeEEccCCCcCCCCcc
Q 010357 177 EADRILE-LGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLPEDKS 255 (512)
Q Consensus 177 Eah~l~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (512)
|||++.+ .++...+..+...++. ..+++++|||+++....+...+...+..+........
T Consensus 267 EaH~~~~~~~~~~~~~~i~~~~~~---------------~~~~i~lSAT~~~~~~~~~~~~~~~~~~i~~~~~~~~---- 327 (508)
T 3fho_A 267 EADNMLDQQGLGDQSMRIKHLLPR---------------NTQIVLFSATFSERVEKYAERFAPNANEIRLKTEELS---- 327 (508)
T ss_dssp CHHHHTTC--CHHHHHHHHHHSCT---------------TCEEEEEESCCSTHHHHHHHHHSTTCEEECCCCCC------
T ss_pred chhhhcccCCcHHHHHHHHHhCCc---------------CCeEEEEeCCCCHHHHHHHHHhcCCCeEEEeccccCC----
Confidence 9999987 5788888888888765 7899999999999888888888887776654433211
Q ss_pred ccccCCcccchhhhccCCCccccccccccccccceeeeEEEec-CCchHHHHHHHHHhhhccccCceEEEEeecchhhhh
Q 010357 256 HVRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVP-CGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDF 334 (512)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~k~~~l~~~l~~~~~~~~~~~~lvf~~~~~~~~~ 334 (512)
...+.+.+.... ...+...+..++. ...++++||||+++..++.
T Consensus 328 -------------------------------~~~~~~~~~~~~~~~~k~~~l~~ll~----~~~~~~~LVF~~s~~~a~~ 372 (508)
T 3fho_A 328 -------------------------------VEGIKQLYMDCQSEEHKYNVLVELYG----LLTIGQSIIFCKKKDTAEE 372 (508)
T ss_dssp ---------------------------------CCCCEEEEC--CHHHHHHHHHHHC-------CCCEEEBCSSTTTTTH
T ss_pred -------------------------------cccceEEEEECCchHHHHHHHHHHHH----hcCCCcEEEEECCHHHHHH
Confidence 122223333332 2334444444443 3456899999999999999
Q ss_pred HHHhhhhhcCCCCCCChhHHHhhhhccceeeecCCCCHHHHHHHHHhhhcCCCcEEEeecccccCCCCCCCcEEEEeCCC
Q 010357 335 HYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSA 414 (512)
Q Consensus 335 l~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~l~g~~~~~~r~~~~~~f~~~~~~vLvaT~~~~~Gldip~~~~VI~~~~p 414 (512)
+++.|.+. +..+..+||+|+..+|..+++.|++|+.+|||||+++++|+|+|++++||+++.|
T Consensus 373 l~~~L~~~-----------------~~~v~~~hg~~~~~~R~~il~~f~~g~~~VLVaT~~l~~GiDip~v~~VI~~~~p 435 (508)
T 3fho_A 373 IARRMTAD-----------------GHTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTTNVIARGIDVSQVNLVVNYDMP 435 (508)
T ss_dssp HHHHHTTT-----------------TCCCCEEC-----CTTGGGTHHHHSSSCCCCEECC-----CCCTTCCEEEC----
T ss_pred HHHHHHhC-----------------CCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEeCChhhcCCCccCCCEEEEECCC
Confidence 99999886 7789999999999999999999999999999999999999999999999999999
Q ss_pred ------CChhHHHHhhhhcccCCCCccEEEecCc-cchhHHHHHHHc-CCCCCccCh
Q 010357 415 ------GEATEYVHRVGRTARLGERGDSLLFLQP-VEMDYLQDLEKH-GVSLTEYPL 463 (512)
Q Consensus 415 ------~s~~~~~Q~~GRagR~g~~g~~~~~~~~-~~~~~~~~l~~~-~~~~~~~~~ 463 (512)
.+...|+||+||+||.|+.|.|++|+.+ .+...++.+++. +..+++++.
T Consensus 436 ~~~~~~~s~~~~~Qr~GRagR~g~~g~~i~l~~~~~~~~~~~~i~~~~~~~i~~l~~ 492 (508)
T 3fho_A 436 LDQAGRPDPQTYLHRIGRTGRFGRVGVSINFVHDKKSWEEMNAIQEYFQRPITRVPT 492 (508)
T ss_dssp CC-----CTHHHHHTTSCCC-----CEEEEEECTTTSSSSHHHHHHHSCCCCC----
T ss_pred CcccCCCCHHHHHHHhhhcCCCCCCcEEEEEEeChHHHHHHHHHHHHHCCCcccCCC
Confidence 8899999999999999999999999985 556667777664 555555443
No 18
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=100.00 E-value=3.3e-48 Score=384.95 Aligned_cols=336 Identities=18% Similarity=0.269 Sum_probs=254.6
Q ss_pred HHHHHHHHHhcCCCCCcHHHHHHHHHhhcCCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcHHHH
Q 010357 27 STLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELC 106 (512)
Q Consensus 27 ~~~~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~ 106 (512)
+++.+.+++.+||. |+++|.++++.+++++++++++|||||||++|+++++..... +.+++|++|+++|+
T Consensus 8 ~~~~~~l~~~~~~~-~~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~l~~~~~~~~~---------~~~~lil~Pt~~L~ 77 (414)
T 3oiy_A 8 EDFRSFFKKKFGKD-LTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLARK---------GKKSALVFPTVTLV 77 (414)
T ss_dssp HHHHHHHHHHHSSC-CCHHHHHHHHHHTTTCCEECCSCSSSSHHHHHHHHHHHHHTT---------TCCEEEEESSHHHH
T ss_pred HHHHHHHHHhcCCC-CCHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHhcC---------CCEEEEEECCHHHH
Confidence 46777887878995 999999999999999999999999999999999998887633 67899999999999
Q ss_pred HHHHHHHHHHHhhcCCcceEEEeCCCch---HHHHHHHcCC-CCEEEeCChHHHHHHhhcCCCcCCceeEEEEcchhHHH
Q 010357 107 LQVYEILHKLLHRFHWIVPGYVMGGENR---SKEKARLRKG-ISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRIL 182 (512)
Q Consensus 107 ~q~~~~~~~~~~~~~~~~~~~~~~g~~~---~~~~~~~~~~-~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lV~DEah~l~ 182 (512)
.|+++.+..++. . ...+..+.|+... ......+..+ ++|+|+||+++.+.+.. +.+.++++||+||||++.
T Consensus 78 ~q~~~~~~~~~~-~-~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~---~~~~~~~~iViDEaH~~~ 152 (414)
T 3oiy_A 78 KQTLERLQKLAD-E-KVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK---LSQKRFDFVFVDDVDAVL 152 (414)
T ss_dssp HHHHHHHHHHCC-S-SCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHH---HTTCCCSEEEESCHHHHH
T ss_pred HHHHHHHHHHcc-C-CceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHH---hccccccEEEEeChHhhh
Confidence 999999999866 3 3566777788776 4455555555 89999999999887764 445589999999999876
Q ss_pred h-----------cCchHH-HHHHHHHhccCCCCCCCCCCcccccceeEEEEEEe-cchhhH-HHHHhhcCCCeEEccCCC
Q 010357 183 E-----------LGFGKE-IEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSAT-LNEKVN-HLAKISLETPVLIGLDEK 248 (512)
Q Consensus 183 ~-----------~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT-~~~~~~-~~~~~~~~~~~~~~~~~~ 248 (512)
+ .+|... +..++..++..... .........+++++||| .+.... .+...... +.....
T Consensus 153 ~~~~~~d~~l~~~~~~~~~~~~i~~~~~~~~~~----~~l~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~----~~~~~~ 224 (414)
T 3oiy_A 153 KASRNIDTLLMMVGIPEEIIRKAFSTIKQGKIY----ERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN----FTVGRL 224 (414)
T ss_dssp HCHHHHHHHHHHTTCCHHHHHHHHHHHHHTCCC----CCCTTCCCCEEEESSCCSSCCSSTTHHHHHHHS----CCSSCC
T ss_pred hccchhhhHHhhcCCcHHHHHHHHHhcccchhh----hhcccCCCceEEEEecCCCcchhHHHHHHHhhc----cCcCcc
Confidence 4 556666 78888877511000 00000127899999999 444332 22222211 000000
Q ss_pred cCCCCccccccCCcccchhhhccCCCccccccccccccccceeeeEEEecCCchHHHHHHHHHhhhccccCceEEEEeec
Q 010357 249 KLPEDKSHVRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFST 328 (512)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~lvf~~~ 328 (512)
.....++.+.+... ++...+.+++... +.++||||++
T Consensus 225 -----------------------------------~~~~~~i~~~~~~~---~~~~~l~~~l~~~-----~~~~lVF~~~ 261 (414)
T 3oiy_A 225 -----------------------------------VSVARNITHVRISS---RSKEKLVELLEIF-----RDGILIFAQT 261 (414)
T ss_dssp -----------------------------------CCCCCSEEEEEESS---CCHHHHHHHHHHH-----CSSEEEEESS
T ss_pred -----------------------------------ccccccchheeecc---CHHHHHHHHHHHc-----CCCEEEEECC
Confidence 01123344444333 5666777777652 4899999999
Q ss_pred chhhhhHHHhhhhhcCCCCCCChhHHHhhhhcccee-eecCCCCHHHHHHHHHhhhcCCCcEEEe----ecccccCCCCC
Q 010357 329 CDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTF-RLHGNMKQEDRRTTFGAFKTEKKALLLS----TDVAARGLDFP 403 (512)
Q Consensus 329 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~v~-~l~g~~~~~~r~~~~~~f~~~~~~vLva----T~~~~~Gldip 403 (512)
+..++.+++.|... ++.+. .+||+ +|+ ++.|++|+.+|||| |+++++|+|+|
T Consensus 262 ~~~~~~l~~~L~~~-----------------~~~~~~~~h~~----~r~--~~~f~~g~~~vLvat~s~T~~~~~GiDip 318 (414)
T 3oiy_A 262 EEEGKELYEYLKRF-----------------KFNVGETWSEF----EKN--FEDFKVGKINILIGVQAYYGKLTRGVDLP 318 (414)
T ss_dssp HHHHHHHHHHHHHT-----------------TCCEEESSSCH----HHH--HHHHHTTSCSEEEEECCTTCCCCCCCCCT
T ss_pred HHHHHHHHHHHHHc-----------------CCceehhhcCc----chH--HHHHhCCCCeEEEEecCcCchhhccCccc
Confidence 99999999999987 77887 88985 444 99999999999999 99999999999
Q ss_pred C-CcEEEEeCCC--CChhHHHHhhhhcccCC----CCccEEEecCccchhHHHHHHH
Q 010357 404 K-VKCIIQYDSA--GEATEYVHRVGRTARLG----ERGDSLLFLQPVEMDYLQDLEK 453 (512)
Q Consensus 404 ~-~~~VI~~~~p--~s~~~~~Q~~GRagR~g----~~g~~~~~~~~~~~~~~~~l~~ 453 (512)
+ +++||+++.| .++.+|+||+||+||.| +.|.+++++ .+...++.+++
T Consensus 319 ~~v~~VI~~~~p~~~~~~~y~qr~GR~gR~g~~~~~~g~~i~~~--~~~~~~~~l~~ 373 (414)
T 3oiy_A 319 ERIKYVIFWGTPSGPDVYTYIQASGRSSRILNGVLVKGVSVIFE--EDEEIFESLKT 373 (414)
T ss_dssp TTCCEEEEESCCTTTCHHHHHHHHGGGCCEETTEECCEEEEEEC--CCHHHHHHHHH
T ss_pred cccCEEEEECCCCCCCHHHHHHHhCccccCCCCCCcceEEEEEE--ccHHHHHHHHH
Confidence 9 9999999999 99999999999999988 479999999 45555555544
No 19
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=100.00 E-value=1.3e-45 Score=390.30 Aligned_cols=370 Identities=18% Similarity=0.241 Sum_probs=263.3
Q ss_pred ccCCcccCCCCHHHHHHHHHhcCCCCCcHHHHHHHHH-hhcCCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCc
Q 010357 16 ASCSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPV-ILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGT 94 (512)
Q Consensus 16 ~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~Q~~~~~~-~~~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~ 94 (512)
...+|+++++++++.+.+. .+||.+|+++|.++++. +.+++++++++|||||||+++.+++++.+.. .+.
T Consensus 6 ~~~~~~~l~l~~~~~~~l~-~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~--------~~~ 76 (715)
T 2va8_A 6 EWMPIEDLKLPSNVIEIIK-KRGIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLLK--------NGG 76 (715)
T ss_dssp CCCBGGGSSSCHHHHHHHH-TTSCCBCCHHHHHHHHTTTTTTCCEEEECCTTSCHHHHHHHHHHHHHHH--------SCS
T ss_pred ccCcHHHcCCCHHHHHHHH-hCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHH--------CCC
Confidence 3468999999999999995 57999999999999999 7789999999999999999999999988764 257
Q ss_pred eEEEEcCcHHHHHHHHHHHHHHHhhcCCcceEEEeCCCchHHHHHHHcCCCCEEEeCChHHHHHHhhcCCCcCCceeEEE
Q 010357 95 FALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWII 174 (512)
Q Consensus 95 ~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lV 174 (512)
+++|++|+++|+.|+++.++.+. ..+ ..++...|+...... .....+|+|+||+++...+.. ....++++++||
T Consensus 77 ~il~i~P~r~La~q~~~~~~~~~-~~g-~~v~~~~G~~~~~~~---~~~~~~Iiv~Tpe~l~~~~~~-~~~~l~~~~~vI 150 (715)
T 2va8_A 77 KAIYVTPLRALTNEKYLTFKDWE-LIG-FKVAMTSGDYDTDDA---WLKNYDIIITTYEKLDSLWRH-RPEWLNEVNYFV 150 (715)
T ss_dssp EEEEECSCHHHHHHHHHHHGGGG-GGT-CCEEECCSCSSSCCG---GGGGCSEEEECHHHHHHHHHH-CCGGGGGEEEEE
T ss_pred eEEEEeCcHHHHHHHHHHHHHhh-cCC-CEEEEEeCCCCCchh---hcCCCCEEEEcHHHHHHHHhC-ChhHhhccCEEE
Confidence 89999999999999999996443 333 455556665443321 123689999999999998877 334467999999
Q ss_pred EcchhHHHhcCchHHHHHHHHHhccCCCCCCCCCCcccccceeEEEEEEecchhhHHHHHhhcCCCeEEccCCCcCCCCc
Q 010357 175 FDEADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLPEDK 254 (512)
Q Consensus 175 ~DEah~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (512)
+||+|++.+..++..++.++..++ ..+++++|||+++. ..+..+... + .+.......+...
T Consensus 151 iDE~H~l~~~~~~~~l~~i~~~~~----------------~~~ii~lSATl~n~-~~~~~~l~~-~-~~~~~~r~~~l~~ 211 (715)
T 2va8_A 151 LDELHYLNDPERGPVVESVTIRAK----------------RRNLLALSATISNY-KQIAKWLGA-E-PVATNWRPVPLIE 211 (715)
T ss_dssp ECSGGGGGCTTTHHHHHHHHHHHH----------------TSEEEEEESCCTTH-HHHHHHHTC-E-EEECCCCSSCEEE
T ss_pred EechhhcCCcccchHHHHHHHhcc----------------cCcEEEEcCCCCCH-HHHHHHhCC-C-ccCCCCCCCCceE
Confidence 999999988789999999998886 67999999999863 445554432 2 2222222111110
Q ss_pred cccccCCcccchhhhccCCCccccccccccccccceeeeEEEec-CCchHHHHHHHHHhhhccccCceEEEEeecchhhh
Q 010357 255 SHVRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVP-CGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVD 333 (512)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~k~~~l~~~l~~~~~~~~~~~~lvf~~~~~~~~ 333 (512)
... ...... . ........... .... .... ...+.+.+ ..++++||||++++.++
T Consensus 212 ~~~-~~~~~~--------~-------~~~~~~~~~~~---~~~~~~~~~----~~~~~~~~--~~~~~~LVF~~s~~~~~ 266 (715)
T 2va8_A 212 GVI-YPERKK--------K-------EYNVIFKDNTT---KKVHGDDAI----IAYTLDSL--SKNGQVLVFRNSRKMAE 266 (715)
T ss_dssp EEE-EECSST--------T-------EEEEEETTSCE---EEEESSSHH----HHHHHHHH--TTTCCEEEECSSHHHHH
T ss_pred EEE-ecCCcc--------c-------ceeeecCcchh---hhcccchHH----HHHHHHHH--hcCCCEEEEECCHHHHH
Confidence 000 000000 0 00000000000 0011 1222 33333332 24689999999999999
Q ss_pred hHHHhhhhhcCCCCCC--------------------ChhHHHhhhhccceeeecCCCCHHHHHHHHHhhhcCCCcEEEee
Q 010357 334 FHYSLLSEFQWSPHSQ--------------------PDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLST 393 (512)
Q Consensus 334 ~l~~~l~~~~~~~~~~--------------------~~~~~~~~~~~~~v~~l~g~~~~~~r~~~~~~f~~~~~~vLvaT 393 (512)
.++..|.+......-. ....+... ...++..+||+|+..+|..+++.|++|..+|||||
T Consensus 267 ~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~-~~~~v~~~h~~l~~~~r~~v~~~f~~g~~~vlvaT 345 (715)
T 2va8_A 267 STALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKSL-ISKGVAYHHAGLSKALRDLIEEGFRQRKIKVIVAT 345 (715)
T ss_dssp HHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHHH-HTTTEEEECTTSCHHHHHHHHHHHHTTCSCEEEEC
T ss_pred HHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHHHHHH-HhcCEEEECCCCCHHHHHHHHHHHHcCCCeEEEEC
Confidence 9999998753220000 00111111 24579999999999999999999999999999999
Q ss_pred cccccCCCCCCCcEEEE----eC-------CCCChhHHHHhhhhcccCC--CCccEEEecCccch
Q 010357 394 DVAARGLDFPKVKCIIQ----YD-------SAGEATEYVHRVGRTARLG--ERGDSLLFLQPVEM 445 (512)
Q Consensus 394 ~~~~~Gldip~~~~VI~----~~-------~p~s~~~~~Q~~GRagR~g--~~g~~~~~~~~~~~ 445 (512)
+++++|+|+|++++||+ |+ .|.|..+|.||+|||||.| ..|.|+++++..+.
T Consensus 346 ~~l~~Gidip~~~~VI~~~~~~d~~~~~~~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~~ 410 (715)
T 2va8_A 346 PTLAAGVNLPARTVIIGDIYRFNKKIAGYYDEIPIMEYKQMSGRAGRPGFDQIGESIVVVRDKED 410 (715)
T ss_dssp GGGGGSSCCCBSEEEECCC--------------CHHHHHHHHTTBCCTTTCSCEEEEEECSCGGG
T ss_pred hHHhcccCCCceEEEEeCCeeccccCCCCCCcCCHHHHHHHhhhcCCCCCCCCceEEEEeCCchH
Confidence 99999999999999998 88 7999999999999999988 47999999987663
No 20
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=100.00 E-value=9.1e-46 Score=391.24 Aligned_cols=361 Identities=19% Similarity=0.234 Sum_probs=266.5
Q ss_pred CcccCCCCHHHHHHHHHhcCCCCCcHHHHHHHHH-hhcCCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEE
Q 010357 19 SFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPV-ILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFAL 97 (512)
Q Consensus 19 ~~~~~~l~~~~~~~l~~~~~~~~~~~~Q~~~~~~-~~~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~l 97 (512)
+|+++++++++.+.+.+ +||.+|+++|.++++. +.+++++++++|||||||+++.+++++.+.. .+.+++
T Consensus 2 ~f~~l~l~~~~~~~l~~-~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~--------~~~~~l 72 (720)
T 2zj8_A 2 RVDELRVDERIKSTLKE-RGIESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRILT--------QGGKAV 72 (720)
T ss_dssp BGGGCCSCHHHHHHHHH-TTCCBCCHHHHHHHTTTGGGTCEEEEECCGGGCHHHHHHHHHHHHHHH--------HCSEEE
T ss_pred cHhhcCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhcCCCcEEEEcCCccHHHHHHHHHHHHHHHh--------CCCEEE
Confidence 69999999999999954 7999999999999998 7899999999999999999999999988763 157899
Q ss_pred EEcCcHHHHHHHHHHHHHHHhhcCCcceEEEeCCCchHHHHHHHcCCCCEEEeCChHHHHHHhhcCCCcCCceeEEEEcc
Q 010357 98 VLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDE 177 (512)
Q Consensus 98 il~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lV~DE 177 (512)
|++|+++|+.|+++.++.+.. .+ ..++...|+...... ....++|+|+||+++...+.. ....++++++||+||
T Consensus 73 ~i~P~raLa~q~~~~~~~l~~-~g-~~v~~~~G~~~~~~~---~~~~~~Iiv~Tpe~l~~~~~~-~~~~l~~~~~vIiDE 146 (720)
T 2zj8_A 73 YIVPLKALAEEKFQEFQDWEK-IG-LRVAMATGDYDSKDE---WLGKYDIIIATAEKFDSLLRH-GSSWIKDVKILVADE 146 (720)
T ss_dssp EECSSGGGHHHHHHHTGGGGG-GT-CCEEEECSCSSCCCG---GGGGCSEEEECHHHHHHHHHH-TCTTGGGEEEEEEET
T ss_pred EEcCcHHHHHHHHHHHHHHHh-cC-CEEEEecCCCCcccc---ccCCCCEEEECHHHHHHHHHc-ChhhhhcCCEEEEEC
Confidence 999999999999999965433 33 455666665443221 224689999999999988876 334467899999999
Q ss_pred hhHHHhcCchHHHHHHHHHhccCCCCCCCCCCcccccceeEEEEEEecchhhHHHHHhhcCCCeEEccCCCcCCCCcccc
Q 010357 178 ADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLPEDKSHV 257 (512)
Q Consensus 178 ah~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (512)
+|++.+.+++..++.++..++. ..+++++|||+++. ..+..+.... .+.....+.+.....
T Consensus 147 ~H~l~~~~r~~~~~~ll~~l~~---------------~~~ii~lSATl~n~-~~~~~~l~~~--~~~~~~rp~~l~~~~- 207 (720)
T 2zj8_A 147 IHLIGSRDRGATLEVILAHMLG---------------KAQIIGLSATIGNP-EELAEWLNAE--LIVSDWRPVKLRRGV- 207 (720)
T ss_dssp GGGGGCTTTHHHHHHHHHHHBT---------------TBEEEEEECCCSCH-HHHHHHTTEE--EEECCCCSSEEEEEE-
T ss_pred CcccCCCcccHHHHHHHHHhhc---------------CCeEEEEcCCcCCH-HHHHHHhCCc--ccCCCCCCCcceEEE-
Confidence 9999888899999999999874 78999999999863 4455543221 111111111100000
Q ss_pred ccCCcccchhhhccCCCccccccccccccccceeeeEEEecCCchHHHHHHHHHhhhccccCceEEEEeecchhhhhHHH
Q 010357 258 RFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYS 337 (512)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~ 337 (512)
.... ......... .........+.+.+. .++++||||++++.++.++.
T Consensus 208 ~~~~---------------------~~~~~~~~~-----~~~~~~~~~~~~~~~------~~~~~LVF~~sr~~~~~~a~ 255 (720)
T 2zj8_A 208 FYQG---------------------FVTWEDGSI-----DRFSSWEELVYDAIR------KKKGALIFVNMRRKAERVAL 255 (720)
T ss_dssp EETT---------------------EEEETTSCE-----EECSSTTHHHHHHHH------TTCCEEEECSCHHHHHHHHH
T ss_pred EeCC---------------------eeeccccch-----hhhhHHHHHHHHHHh------CCCCEEEEecCHHHHHHHHH
Confidence 0000 000000000 001233344444332 35899999999999999999
Q ss_pred hhhhhcCCCC-----------------CCChhHHHhhhhccceeeecCCCCHHHHHHHHHhhhcCCCcEEEeecccccCC
Q 010357 338 LLSEFQWSPH-----------------SQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGL 400 (512)
Q Consensus 338 ~l~~~~~~~~-----------------~~~~~~~~~~~~~~~v~~l~g~~~~~~r~~~~~~f~~~~~~vLvaT~~~~~Gl 400 (512)
.|.+...... ......+... ...++..+||+|+.++|..+++.|++|.++|||||+++++|+
T Consensus 256 ~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~-~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gv 334 (720)
T 2zj8_A 256 ELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKA-IRGGVAFHHAGLGRDERVLVEENFRKGIIKAVVATPTLSAGI 334 (720)
T ss_dssp HHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHH-HTTTEEEECTTSCHHHHHHHHHHHHTTSSCEEEECSTTGGGC
T ss_pred HHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHH-HhcCeeeecCCCCHHHHHHHHHHHHCCCCeEEEECcHhhccC
Confidence 9976421100 0001112222 245799999999999999999999999999999999999999
Q ss_pred CCCCCcEEEE----eC----CCCChhHHHHhhhhcccCC--CCccEEEecCccchh
Q 010357 401 DFPKVKCIIQ----YD----SAGEATEYVHRVGRTARLG--ERGDSLLFLQPVEMD 446 (512)
Q Consensus 401 dip~~~~VI~----~~----~p~s~~~~~Q~~GRagR~g--~~g~~~~~~~~~~~~ 446 (512)
|+|++++||+ |+ .|.+..+|.||+|||||.| ..|.|+++++..+..
T Consensus 335 dip~~~~VI~~~~~yd~~g~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~~~ 390 (720)
T 2zj8_A 335 NTPAFRVIIRDIWRYSDFGMERIPIIEVHQMLGRAGRPKYDEVGEGIIVSTSDDPR 390 (720)
T ss_dssp CCCBSEEEECCSEECCSSSCEECCHHHHHHHHTTBCCTTTCSEEEEEEECSSSCHH
T ss_pred CCCceEEEEcCCeeecCCCCccCCHHHHHHHHhhcCCCCCCCCceEEEEecCccHH
Confidence 9999999998 66 5899999999999999988 468999999987743
No 21
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.1e-46 Score=403.00 Aligned_cols=398 Identities=19% Similarity=0.208 Sum_probs=268.5
Q ss_pred CCcccCCCCHHHHHHHHHhcCCCCCcHHHHHHHHHhhcCCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEE
Q 010357 18 CSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFAL 97 (512)
Q Consensus 18 ~~~~~~~l~~~~~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~l 97 (512)
..|..+++++.+...+...++|. |+++|.++++.+.+|++++++||||||||++|.+|++..+.. +.+++
T Consensus 162 ~~~~~~~l~~~~~~~~~~~~~f~-ltp~Q~~AI~~i~~g~dvLV~ApTGSGKTlva~l~i~~~l~~---------g~rvl 231 (1108)
T 3l9o_A 162 PNYDYTPIAEHKRVNEARTYPFT-LDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKN---------KQRVI 231 (1108)
T ss_dssp SCCCSSTTTTTCCCSCSSCCSSC-CCHHHHHHHHHHTTTCCEEEECCSSSHHHHHHHHHHHHHHHT---------TCEEE
T ss_pred CCcccCCCChhhhHHHHHhCCCC-CCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHHhc---------CCeEE
Confidence 36777788877777776666665 999999999999999999999999999999999999998865 77899
Q ss_pred EEcCcHHHHHHHHHHHHHHHhhcCCcceEEEeCCCchHHHHHHHcCCCCEEEeCChHHHHHHhhcCCCcCCceeEEEEcc
Q 010357 98 VLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDE 177 (512)
Q Consensus 98 il~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lV~DE 177 (512)
|++|+++|+.|+++.+...+. .++.+.|+.. ....++|+|+||++|.+.+... ...+.++++|||||
T Consensus 232 vl~PtraLa~Q~~~~l~~~~~-----~VglltGd~~-------~~~~~~IlV~Tpe~L~~~L~~~-~~~l~~l~lVVIDE 298 (1108)
T 3l9o_A 232 YTSPIKALSNQKYRELLAEFG-----DVGLMTGDIT-------INPDAGCLVMTTEILRSMLYRG-SEVMREVAWVIFDE 298 (1108)
T ss_dssp EEESSHHHHHHHHHHHHHHTS-----SEEEECSSCB-------CCCSCSEEEEEHHHHHHHHHHC-SSHHHHEEEEEEET
T ss_pred EEcCcHHHHHHHHHHHHHHhC-----CccEEeCccc-------cCCCCCEEEeChHHHHHHHHcC-ccccccCCEEEEhh
Confidence 999999999999999998864 4556666654 3456899999999999988773 44467899999999
Q ss_pred hhHHHhcCchHHHHHHHHHhccCCCCCCCCCCcccccceeEEEEEEecchhhH--HHHHhhcCCCe-EEccCCCcCCCCc
Q 010357 178 ADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVN--HLAKISLETPV-LIGLDEKKLPEDK 254 (512)
Q Consensus 178 ah~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~--~~~~~~~~~~~-~~~~~~~~~~~~~ 254 (512)
||++.+.+++..+..++..++. ..+++++|||+++... .+.......+. .+.......+...
T Consensus 299 aH~l~d~~rg~~~e~ii~~l~~---------------~~qvl~lSATipn~~e~a~~l~~~~~~~~~vi~~~~rp~pl~~ 363 (1108)
T 3l9o_A 299 VHYMRDKERGVVWEETIILLPD---------------KVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNFRPTPLQH 363 (1108)
T ss_dssp GGGTTSHHHHHHHHHHHHHSCT---------------TSEEEEEECSCSSCHHHHHHHHHHTCSCEEEEEECCCSSCEEE
T ss_pred hhhccccchHHHHHHHHHhcCC---------------CceEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCCCcccceE
Confidence 9999998999999999998876 8899999999987533 33333344433 3333332222111
Q ss_pred cccccCC--cccch-----------hhhccCCCccccccccccccccceeeeEEEe-cCCchHHHHHHHHHhhhccccCc
Q 010357 255 SHVRFGS--LESDV-----------KEEVEHPSTTMRSTTEDFKLPAQLVQRYVKV-PCGSRLAVLLSILKHLFDTEVSQ 320 (512)
Q Consensus 255 ~~~~~~~--~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~k~~~l~~~l~~~~~~~~~~ 320 (512)
..+.... ..... ...........................+... ........+..++..+. .....
T Consensus 364 ~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~l~-~~~~~ 442 (1108)
T 3l9o_A 364 YLFPAHGDGIYLVVDEKSTFREENFQKAMASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIW-KKKYN 442 (1108)
T ss_dssp EEEETTSSCCEEEEETTTEECHHHHHHHHTTC-----------------------------CHHHHHHHHHHHH-HTTCC
T ss_pred EEeecCCcceeeeeccccchhhhhHHHHHHHHHhhhcccccccccccccccccccccccccchhHHHHHHHHHH-hcCCC
Confidence 1100000 00000 0000000000000000000000000000000 00001233344444332 23467
Q ss_pred eEEEEeecchhhhhHHHhhhhhcCCCCCCCh--------------------hHHHh--hhhccceeeecCCCCHHHHHHH
Q 010357 321 KLVVFFSTCDAVDFHYSLLSEFQWSPHSQPD--------------------MELKQ--LFLRCKTFRLHGNMKQEDRRTT 378 (512)
Q Consensus 321 ~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~--------------------~~~~~--~~~~~~v~~l~g~~~~~~r~~~ 378 (512)
++||||+++..|+.++..|............ ..... -.+..++..+||+|++.+|..+
T Consensus 443 ~vIVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gV~~~Hg~l~~~~R~~v 522 (1108)
T 3l9o_A 443 PVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVI 522 (1108)
T ss_dssp CEEEEESCHHHHHHHHHHTCSHHHHCC----CHHHHGGGSCTHHHHHTTCCHHHHHHTHHHHHTEEEECSCSCHHHHHHH
T ss_pred CEEEEeCcHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHhhhcCeeeecCCCCHHHHHHH
Confidence 9999999999999999999765332211000 00000 1224458999999999999999
Q ss_pred HHhhhcCCCcEEEeecccccCCCCCCCcEEEEeCC--------CCChhHHHHhhhhcccCC--CCccEEEecCcc-chhH
Q 010357 379 FGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDS--------AGEATEYVHRVGRTARLG--ERGDSLLFLQPV-EMDY 447 (512)
Q Consensus 379 ~~~f~~~~~~vLvaT~~~~~Gldip~~~~VI~~~~--------p~s~~~~~Q~~GRagR~g--~~g~~~~~~~~~-~~~~ 447 (512)
++.|++|.++|||||+++++|||+|++++||+++. |.|+.+|+||+|||||.| ..|.|++++++. +...
T Consensus 523 ~~~F~~G~ikVLVAT~vla~GIDiP~v~~VI~~~~~~d~~~~r~iS~~eyiQr~GRAGR~G~d~~G~~ill~~~~~~~~~ 602 (1108)
T 3l9o_A 523 EILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQV 602 (1108)
T ss_dssp HHHHHHTCCCEEEEESCCCSCCCC--CEEEESCSEEESSSCEEECCHHHHHHHHHHSCCSSSCSSEEEEEEECCCCCHHH
T ss_pred HHHHhCCCCeEEEECcHHhcCCCCCCceEEEecCcccCccccccCCHHHHHHhhcccCCCCCCCceEEEEEecCCcCHHH
Confidence 99999999999999999999999999999997765 347778999999999999 678999998875 4556
Q ss_pred HHHHHHc
Q 010357 448 LQDLEKH 454 (512)
Q Consensus 448 ~~~l~~~ 454 (512)
++.+...
T Consensus 603 ~~~l~~~ 609 (1108)
T 3l9o_A 603 AKGMVKG 609 (1108)
T ss_dssp HHHHHHC
T ss_pred HHHHhcC
Confidence 6666653
No 22
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=100.00 E-value=1.4e-45 Score=388.73 Aligned_cols=365 Identities=20% Similarity=0.246 Sum_probs=262.9
Q ss_pred CcccCC--CCHHHHHHHHHhcCCCCCcHHHHHHHHHhhcCCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceE
Q 010357 19 SFSSLG--LHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFA 96 (512)
Q Consensus 19 ~~~~~~--l~~~~~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (512)
+|++++ +++++.+.+. .+||.+|+++|.++++.+.+++++++++|||||||+++.+++++.+.. +.++
T Consensus 2 ~f~~l~~~l~~~~~~~l~-~~g~~~l~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~~l~il~~~~~---------~~~~ 71 (702)
T 2p6r_A 2 KVEELAESISSYAVGILK-EEGIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAIK---------GGKS 71 (702)
T ss_dssp CSHHHHHHHHHHHHHHHH-CC---CCCCCCHHHHHHHTTCSCEEEECSSHHHHHHHHHHHHHHHHHT---------TCCE
T ss_pred chhhhhhccCHHHHHHHH-hCCCCCCCHHHHHHHHHHhCCCcEEEEcCCccHHHHHHHHHHHHHHHh---------CCcE
Confidence 688898 9999999995 579999999999999999999999999999999999999999988765 5679
Q ss_pred EEEcCcHHHHHHHHHHHHHHHhhcCCcceEEEeCCCchHHHHHHHcCCCCEEEeCChHHHHHHhhcCCCcCCceeEEEEc
Q 010357 97 LVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFD 176 (512)
Q Consensus 97 lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lV~D 176 (512)
+|++|+++|+.|+++.++.+.. .+ ..++...|+...... ....++|+|+||+++...+.. ....++++++||+|
T Consensus 72 l~i~P~r~La~q~~~~~~~~~~-~g-~~v~~~~G~~~~~~~---~~~~~~Iiv~Tpe~l~~~l~~-~~~~l~~~~~vIiD 145 (702)
T 2p6r_A 72 LYVVPLRALAGEKYESFKKWEK-IG-LRIGISTGDYESRDE---HLGDCDIIVTTSEKADSLIRN-RASWIKAVSCLVVD 145 (702)
T ss_dssp EEEESSHHHHHHHHHHHTTTTT-TT-CCEEEECSSCBCCSS---CSTTCSEEEEEHHHHHHHHHT-TCSGGGGCCEEEET
T ss_pred EEEeCcHHHHHHHHHHHHHHHh-cC-CEEEEEeCCCCcchh---hccCCCEEEECHHHHHHHHHc-ChhHHhhcCEEEEe
Confidence 9999999999999999964432 33 455566665443221 223689999999999998876 33446789999999
Q ss_pred chhHHHhcCchHHHHHHHHHhccCCCCCCCCCCcccccceeEEEEEEecchhhHHHHHhhcCCCeEEccCCCcCCCCccc
Q 010357 177 EADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLPEDKSH 256 (512)
Q Consensus 177 Eah~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (512)
|+|++.+.+++..++.++..++.. ....+++++|||+++ ...+..+.. .+ .+.......+.....
T Consensus 146 E~H~l~~~~r~~~~~~ll~~l~~~------------~~~~~ii~lSATl~n-~~~~~~~l~-~~-~~~~~~r~~~l~~~~ 210 (702)
T 2p6r_A 146 EIHLLDSEKRGATLEILVTKMRRM------------NKALRVIGLSATAPN-VTEIAEWLD-AD-YYVSDWRPVPLVEGV 210 (702)
T ss_dssp TGGGGGCTTTHHHHHHHHHHHHHH------------CTTCEEEEEECCCTT-HHHHHHHTT-CE-EEECCCCSSCEEEEE
T ss_pred eeeecCCCCcccHHHHHHHHHHhc------------CcCceEEEECCCcCC-HHHHHHHhC-CC-cccCCCCCccceEEE
Confidence 999999888999999988877531 117899999999986 455555443 22 222222211110000
Q ss_pred cccCCcccchhhhccCCCccccccccccccccceeeeEEEecCCchHHHHHHHHHhhhccccCceEEEEeecchhhhhHH
Q 010357 257 VRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHY 336 (512)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~ 336 (512)
. ... ............... .....+.+.+ ..++++||||++++.++.++
T Consensus 211 ~-~~~---------------------~~~~~~~~~~~~~~~---~~~~~~~~~~------~~~~~~LVF~~s~~~~~~~a 259 (702)
T 2p6r_A 211 L-CEG---------------------TLELFDGAFSTSRRV---KFEELVEECV------AENGGVLVFESTRRGAEKTA 259 (702)
T ss_dssp E-CSS---------------------EEEEEETTEEEEEEC---CHHHHHHHHH------HTTCCEEEECSSHHHHHHHH
T ss_pred e-eCC---------------------eeeccCcchhhhhhh---hHHHHHHHHH------hcCCCEEEEcCCHHHHHHHH
Confidence 0 000 000000000000000 1223333332 24689999999999999999
Q ss_pred HhhhhhcCCCCC--------------CChhHHHhhhhccceeeecCCCCHHHHHHHHHhhhcCCCcEEEeecccccCCCC
Q 010357 337 SLLSEFQWSPHS--------------QPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDF 402 (512)
Q Consensus 337 ~~l~~~~~~~~~--------------~~~~~~~~~~~~~~v~~l~g~~~~~~r~~~~~~f~~~~~~vLvaT~~~~~Gldi 402 (512)
..|.+.....-. .....+... .+.++..+||+|+.++|..+++.|++|..+|||||+++++|+|+
T Consensus 260 ~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gidi 338 (702)
T 2p6r_A 260 VKLSAITAKYVENEGLEKAILEENEGEMSRKLAEC-VRKGAAFHHAGLLNGQRRVVEDAFRRGNIKVVVATPTLAAGVNL 338 (702)
T ss_dssp HHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHH-HHTTCCEECTTSCHHHHHHHHHHHHTTSCCEEEECSTTTSSSCC
T ss_pred HHHHHHHHhhcChHHHHHHHHhhccccccHHHHHH-HhcCeEEecCCCCHHHHHHHHHHHHCCCCeEEEECcHHhccCCC
Confidence 999764221000 001112222 24678899999999999999999999999999999999999999
Q ss_pred CCCcEEEE----eC---CCCChhHHHHhhhhcccCC--CCccEEEecCccchh
Q 010357 403 PKVKCIIQ----YD---SAGEATEYVHRVGRTARLG--ERGDSLLFLQPVEMD 446 (512)
Q Consensus 403 p~~~~VI~----~~---~p~s~~~~~Q~~GRagR~g--~~g~~~~~~~~~~~~ 446 (512)
|++++||+ |+ .|.|..+|.||+|||||.| ..|.|+++++..+.+
T Consensus 339 p~~~~VI~~~~~yd~~~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~~~ 391 (702)
T 2p6r_A 339 PARRVIVRSLYRFDGYSKRIKVSEYKQMAGRAGRPGMDERGEAIIIVGKRDRE 391 (702)
T ss_dssp CBSEEEECCSEEESSSEEECCHHHHHHHHTTBSCTTTCSCEEEEEECCGGGHH
T ss_pred CceEEEEcCceeeCCCCCcCCHHHHHHHhhhcCCCCCCCCceEEEEecCccHH
Confidence 99999998 66 6889999999999999988 478999999987743
No 23
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=100.00 E-value=6.7e-45 Score=375.94 Aligned_cols=385 Identities=17% Similarity=0.223 Sum_probs=207.6
Q ss_pred CCCCCcHHHHHHHHHhhcCCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHH
Q 010357 38 GFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLL 117 (512)
Q Consensus 38 ~~~~~~~~Q~~~~~~~~~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 117 (512)
+..+||++|.++++.+++++++++++|||+|||++|++|+++.+..... ..+.++||++|+++|+.|+.+.+..++
T Consensus 4 ~~~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~----~~~~~~lil~P~~~L~~q~~~~~~~~~ 79 (556)
T 4a2p_A 4 ETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPA----GRKAKVVFLATKVPVYEQQKNVFKHHF 79 (556)
T ss_dssp ----CCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCS----SCCCCEEEECSSHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHHhCcc----cCCCeEEEEeCCHHHHHHHHHHHHHHh
Confidence 3346999999999999999999999999999999999999998876322 226779999999999999999999998
Q ss_pred hhcCCcceEEEeCCCchHHHHHHHcCCCCEEEeCChHHHHHHhhcCCCcCCceeEEEEcchhHHHhcCchHHHH-HHHHH
Q 010357 118 HRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIE-EILDI 196 (512)
Q Consensus 118 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lV~DEah~l~~~~~~~~~~-~i~~~ 196 (512)
...+ ..+..+.|+.........+..+++|+|+||+++.+.+.......+.++++||+||||++.+.+....+. ..+..
T Consensus 80 ~~~~-~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~ 158 (556)
T 4a2p_A 80 ERQG-YSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQ 158 (556)
T ss_dssp GGGT-CCEEECCCC-----CHHHHHHHCSEEEECHHHHHHHHHSSSCCCSTTCSEEEEETGGGCSTTSHHHHHHHHHHHH
T ss_pred cccC-ceEEEEeCCCCcchhHHHhhCCCCEEEECHHHHHHHHHhCcccccccCCEEEEECCcccCCcchHHHHHHHHHHh
Confidence 7654 455667777765555556666789999999999998877443367899999999999998776433332 22211
Q ss_pred -hccCCCCCCCCCCcccccceeEEEEEEecchh--------hHHHHH--hhcCCCeEEccCCCc------CCCCc-cccc
Q 010357 197 -LGSRNIGSIGEGNEVSNVKRQNLLLSATLNEK--------VNHLAK--ISLETPVLIGLDEKK------LPEDK-SHVR 258 (512)
Q Consensus 197 -~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~--------~~~~~~--~~~~~~~~~~~~~~~------~~~~~-~~~~ 258 (512)
+.. .....+++++|||++.. ...+.. ..+....+....... ..... ....
T Consensus 159 ~~~~------------~~~~~~~l~lSAT~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (556)
T 4a2p_A 159 KFNS------------ASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRL 226 (556)
T ss_dssp HHCC---------------CCEEEEEESCCCCTTCSSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHTCCCCEEEEE
T ss_pred hhcc------------cCCCCeEEEEeCCcccCchhhHHHHHHHHHHHHHhcCCeEecchhcchHHHHhcCCCCceEEEE
Confidence 111 11268999999999531 111111 111211111111000 00000 0000
Q ss_pred cCC-ccc-----------chhhhcc---CCCccccccccccc-------------------cc-----------------
Q 010357 259 FGS-LES-----------DVKEEVE---HPSTTMRSTTEDFK-------------------LP----------------- 287 (512)
Q Consensus 259 ~~~-~~~-----------~~~~~~~---~~~~~~~~~~~~~~-------------------~~----------------- 287 (512)
+.. ... ....... ............+. .+
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (556)
T 4a2p_A 227 VKRRIHNPFAAIISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTE 306 (556)
T ss_dssp CCCCSCCHHHHHHHHHHHHHHHHHHHHCC---------CCCSSHHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHH
T ss_pred cCCCcCChHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccchhhHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHH
Confidence 000 000 0000000 00000000000000 00
Q ss_pred ---------------------------------------------------cceee-eEEEecCCchHHHHHHHHHhhhc
Q 010357 288 ---------------------------------------------------AQLVQ-RYVKVPCGSRLAVLLSILKHLFD 315 (512)
Q Consensus 288 ---------------------------------------------------~~~~~-~~~~~~~~~k~~~l~~~l~~~~~ 315 (512)
..+.. .......+.|...+.+++...+.
T Consensus 307 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~~l~~~~~ 386 (556)
T 4a2p_A 307 HLRKYNDALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYR 386 (556)
T ss_dssp HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTHHHHHHHHHCSSSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhHHHHhhhhccCCCCCChHHHHHHHHHHHHhc
Confidence 00000 00000135688888888887765
Q ss_pred cccCceEEEEeecchhhhhHHHhhhhhcCCCCCCChhHHHhhhhccceeeecCCCCHHHHHHHHHhhhc-CCCcEEEeec
Q 010357 316 TEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKT-EKKALLLSTD 394 (512)
Q Consensus 316 ~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~l~g~~~~~~r~~~~~~f~~-~~~~vLvaT~ 394 (512)
...+.++||||+++..++.+++.|........ .....+.|.+...+||+|+..+|..+++.|++ |+.+|||||+
T Consensus 387 ~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~-----~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~ 461 (556)
T 4a2p_A 387 YNPQTRTLLFAKTRALVSALKKCMEENPILNY-----IKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATS 461 (556)
T ss_dssp HCTTCCEEEEESSHHHHHHHHHHHTTCSGGGS-----CCEEC------------------------------CCEEEEEC
T ss_pred CCCCceEEEEEccHHHHHHHHHHHHhCCCcce-----eeeeEEEccCCcccccccCHHHHHHHHHHhcccCceEEEEEcC
Confidence 56678999999999999999999976410000 00001125556667899999999999999999 9999999999
Q ss_pred ccccCCCCCCCcEEEEeCCCCChhHHHHhhhhcccCCCCccEEEecCccchh
Q 010357 395 VAARGLDFPKVKCIIQYDSAGEATEYVHRVGRTARLGERGDSLLFLQPVEMD 446 (512)
Q Consensus 395 ~~~~Gldip~~~~VI~~~~p~s~~~~~Q~~GRagR~g~~g~~~~~~~~~~~~ 446 (512)
++++|+|+|++++||+|++|+|+..|+||+|| ||. ++|.+++++++.+.+
T Consensus 462 ~~~~GiDip~v~~VI~~d~p~s~~~~~Qr~GR-gR~-~~g~~~~l~~~~~~~ 511 (556)
T 4a2p_A 462 VADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEVV 511 (556)
T ss_dssp -----------CEEEEETCCSCHHHHHHC----------CCEEEEESCHHHH
T ss_pred chhcCCCchhCCEEEEeCCCCCHHHHHHhcCC-CCC-CCceEEEEEeCcchH
Confidence 99999999999999999999999999999999 999 889999999987643
No 24
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=100.00 E-value=1.7e-44 Score=373.01 Aligned_cols=389 Identities=16% Similarity=0.208 Sum_probs=237.4
Q ss_pred CCcHHHHHHHHHhhcCCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHHhhc
Q 010357 41 APTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRF 120 (512)
Q Consensus 41 ~~~~~Q~~~~~~~~~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~ 120 (512)
+|+++|.++++.+++++++++++|||+|||++|++|+++.+..... ..+.++||++|+++|+.|+.+.+..++...
T Consensus 4 ~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~----~~~~~~lil~P~~~L~~q~~~~~~~~~~~~ 79 (555)
T 3tbk_A 4 KPRNYQLELALPAKKGKNTIICAPTGCGKTFVSLLICEHHLKKFPC----GQKGKVVFFANQIPVYEQQATVFSRYFERL 79 (555)
T ss_dssp CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCS----SCCCCEEEECSSHHHHHHHHHHHHHHHHTT
T ss_pred CCcHHHHHHHHHHhCCCCEEEEeCCCChHHHHHHHHHHHHHHhccc----CCCCEEEEEeCCHHHHHHHHHHHHHHhccC
Confidence 4999999999999999999999999999999999999998876322 226779999999999999999999998765
Q ss_pred CCcceEEEeCCCchHHHHHHHcCCCCEEEeCChHHHHHHhhcCCCcCCceeEEEEcchhHHHhcCchHH-HHHHHHHhcc
Q 010357 121 HWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKE-IEEILDILGS 199 (512)
Q Consensus 121 ~~~~~~~~~~g~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lV~DEah~l~~~~~~~~-~~~i~~~~~~ 199 (512)
+ ..+..+.|+.........+..+++|+|+||+++.+.+.......+.++++||+||||++.+.+.... +...+.....
T Consensus 80 ~-~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~~~ 158 (555)
T 3tbk_A 80 G-YNIASISGATSDSVSVQHIIEDNDIIILTPQILVNNLNNGAIPSLSVFTLMIFDECHNTSKNHPYNQIMFRYLDHKLG 158 (555)
T ss_dssp T-CCEEEECTTTGGGSCHHHHHHHCSEEEECHHHHHHHHHTSSSCCGGGCSEEEETTGGGCSTTCHHHHHHHHHHHHHTS
T ss_pred C-cEEEEEcCCCcchhhHHHHhcCCCEEEECHHHHHHHHhcCcccccccCCEEEEECccccCCcchHHHHHHHHHHhhhc
Confidence 4 5566777777666555556667899999999999988774443677899999999999987643222 2222222211
Q ss_pred CCCCCCCCCCcccccceeEEEEEEecchh--------hHHHHH--hhcCCCeEEccCCC------cCCCCc-cccccCC-
Q 010357 200 RNIGSIGEGNEVSNVKRQNLLLSATLNEK--------VNHLAK--ISLETPVLIGLDEK------KLPEDK-SHVRFGS- 261 (512)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~i~~SAT~~~~--------~~~~~~--~~~~~~~~~~~~~~------~~~~~~-~~~~~~~- 261 (512)
. ..+..++++++|||+... ...+.. ..+....+...... ...... .......
T Consensus 159 ~----------~~~~~~~~l~lSAT~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 228 (555)
T 3tbk_A 159 E----------SRDPLPQVVGLTASVGVGDAKTAEEAMQHICKLCAALDASVIATVRDNVAELEQVVYKPQKISRKVASR 228 (555)
T ss_dssp S----------CCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHTTCSEEECCCSCHHHHHTTCCCCCEEEEECCCC
T ss_pred c----------ccCCCCeEEEEecCcccCccccHHHHHHHHHHHHHhcCCeeeeccccCHHHHHhhcCCCceEEEEecCc
Confidence 0 111267999999999542 111111 11222222211110 000000 0000000
Q ss_pred cccch-----------hhhccCC----------Ccccccc------c-------ccccccc-------------------
Q 010357 262 LESDV-----------KEEVEHP----------STTMRST------T-------EDFKLPA------------------- 288 (512)
Q Consensus 262 ~~~~~-----------~~~~~~~----------~~~~~~~------~-------~~~~~~~------------------- 288 (512)
..... ....... ....... . .....+.
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 308 (555)
T 3tbk_A 229 TSNTFKCIISQLMKETEKLAKDVSEELGKLFQIQNREFGTQKYEQWIVGVHKACSVFQMADKEEESRVCKALFLYTSHLR 308 (555)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHTSCHHHHGGGGCCSCCSSSHHHHHHHHHHHHHHHTCCCSSHHHHHHHHHHHHHHHHHHH
T ss_pred ccChHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccchhhhHHHHHHHHHhhhhhccchhhHHHHHHHHHHHHHHHH
Confidence 00000 0000000 0000000 0 0000000
Q ss_pred -------------------------------------------------ceeee-EEEecCCchHHHHHHHHHhhhcccc
Q 010357 289 -------------------------------------------------QLVQR-YVKVPCGSRLAVLLSILKHLFDTEV 318 (512)
Q Consensus 289 -------------------------------------------------~~~~~-~~~~~~~~k~~~l~~~l~~~~~~~~ 318 (512)
.+... ......+.|...+.+++...+...+
T Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~ 388 (555)
T 3tbk_A 309 KYNDALIISEDAQMTDALNYLKAFFHDVREAAFDETERELTRRFEEKLEELEKVSRDPSNENPKLRDLYLVLQEEYHLKP 388 (555)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHHHHHHHCC-----HHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHhhhhhhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhhhhhhhhhhccCCCcCCHHHHHHHHHHHHHhccCC
Confidence 00000 0000135688888888888776667
Q ss_pred CceEEEEeecchhhhhHHHhhhhhcCCCCCCChhHHHhhhhccceeeecCCCCHHHHHHHHHhhhc-CCCcEEEeecccc
Q 010357 319 SQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKT-EKKALLLSTDVAA 397 (512)
Q Consensus 319 ~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~l~g~~~~~~r~~~~~~f~~-~~~~vLvaT~~~~ 397 (512)
+.++||||+++..++.+++.|........- ....+.+.+...+||+|+..+|..+++.|++ |+.+|||||++++
T Consensus 389 ~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~-----~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~ 463 (555)
T 3tbk_A 389 ETKTILFVKTRALVDALKKWIEENPALSFL-----KPGILTGRGRTNRATGMTLPAQKCVLEAFRASGDNNILIATSVAD 463 (555)
T ss_dssp TCCEEEECSSHHHHHHHHHHHHHCGGGTTC-----CEEECCC--------------------------CCSEEEECCCTT
T ss_pred CceEEEEeCcHHHHHHHHHHHhhCcCcCce-----eeeEEEecCCcccccccCHHHHHHHHHHHhcCCCeeEEEEcchhh
Confidence 799999999999999999999875211000 0000114455566789999999999999999 9999999999999
Q ss_pred cCCCCCCCcEEEEeCCCCChhHHHHhhhhcccCCCCccEEEecCccchhHHHHH
Q 010357 398 RGLDFPKVKCIIQYDSAGEATEYVHRVGRTARLGERGDSLLFLQPVEMDYLQDL 451 (512)
Q Consensus 398 ~Gldip~~~~VI~~~~p~s~~~~~Q~~GRagR~g~~g~~~~~~~~~~~~~~~~l 451 (512)
+|+|+|++++||+|++|+|+..|+||+|| ||. +.|.+++|+++.+......+
T Consensus 464 ~GlDlp~v~~VI~~d~p~s~~~~~Qr~GR-gR~-~~g~~~~l~~~~~~~~~~~~ 515 (555)
T 3tbk_A 464 EGIDIAECNLVILYEYVGNVIKMIQTRGR-GRA-RDSKCFLLTSSADVIEKEKA 515 (555)
T ss_dssp CCEETTSCSEEEEESCCSSCCCEECSSCC-CTT-TSCEEEEEESCHHHHHHHHH
T ss_pred cCCccccCCEEEEeCCCCCHHHHHHhcCc-CcC-CCceEEEEEcCCCHHHHHHH
Confidence 99999999999999999999999999999 998 88999999998775544433
No 25
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.9e-44 Score=383.10 Aligned_cols=375 Identities=20% Similarity=0.225 Sum_probs=257.6
Q ss_pred HhcCCCCCcHHHHHHHHHhhcCCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcHHHHHHHHHHHH
Q 010357 35 ERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILH 114 (512)
Q Consensus 35 ~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~ 114 (512)
..++|. |+++|.++++.+.+++++++++|||||||++|.++++..+.. +.+++|++|+++|+.|+++.+.
T Consensus 81 ~~~~f~-L~~~Q~eai~~l~~g~~vLV~apTGSGKTlva~lai~~~l~~---------g~rvL~l~PtkaLa~Q~~~~l~ 150 (1010)
T 2xgj_A 81 RTYPFT-LDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKN---------KQRVIYTSPIKALSNQKYRELL 150 (1010)
T ss_dssp CCCSSC-CCHHHHHHHHHHHHTCEEEEECCTTSCHHHHHHHHHHHHHHT---------TCEEEEEESSHHHHHHHHHHHH
T ss_pred HhCCCC-CCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHhcc---------CCeEEEECChHHHHHHHHHHHH
Confidence 567887 999999999999999999999999999999999999988754 6789999999999999999999
Q ss_pred HHHhhcCCcceEEEeCCCchHHHHHHHcCCCCEEEeCChHHHHHHhhcCCCcCCceeEEEEcchhHHHhcCchHHHHHHH
Q 010357 115 KLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEIL 194 (512)
Q Consensus 115 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lV~DEah~l~~~~~~~~~~~i~ 194 (512)
..+. .++.+.|+... ....+|+|+||++|.+.+.+ ....+.++++|||||||++.+.+++..++.++
T Consensus 151 ~~~~-----~vglltGd~~~-------~~~~~IvV~Tpe~L~~~L~~-~~~~l~~l~lVViDEaH~l~d~~rg~~~e~il 217 (1010)
T 2xgj_A 151 AEFG-----DVGLMTGDITI-------NPDAGCLVMTTEILRSMLYR-GSEVMREVAWVIFDEVHYMRDKERGVVWEETI 217 (1010)
T ss_dssp HHHS-----CEEEECSSCEE-------CTTCSEEEEEHHHHHHHHHH-TCTTGGGEEEEEEETGGGGGCTTTHHHHHHHH
T ss_pred HHhC-----CEEEEeCCCcc-------CCCCCEEEEcHHHHHHHHHc-CcchhhcCCEEEEechhhhcccchhHHHHHHH
Confidence 8864 45566666543 23579999999999988876 44556799999999999999999999999999
Q ss_pred HHhccCCCCCCCCCCcccccceeEEEEEEecchhhHHHHHh---hcCCCe-EEccCCCcCCCCccccccC--Ccccchhh
Q 010357 195 DILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKI---SLETPV-LIGLDEKKLPEDKSHVRFG--SLESDVKE 268 (512)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~---~~~~~~-~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 268 (512)
..++. ..+++++|||+++... +..+ ....+. .+.......+......... ........
T Consensus 218 ~~l~~---------------~~~il~LSATi~n~~e-~a~~l~~~~~~~~~vi~~~~rp~pl~~~~~~~~~~~~~~~~~~ 281 (1010)
T 2xgj_A 218 ILLPD---------------KVRYVFLSATIPNAME-FAEWICKIHSQPCHIVYTNFRPTPLQHYLFPAHGDGIYLVVDE 281 (1010)
T ss_dssp HHSCT---------------TCEEEEEECCCTTHHH-HHHHHHHHHTSCEEEEEECCCSSCEEEEEEETTSSCCEEEECT
T ss_pred HhcCC---------------CCeEEEEcCCCCCHHH-HHHHHHhhcCCCeEEEecCCCcccceEEEEecCCcceeeeecc
Confidence 88875 8899999999987543 2222 223333 3222222211111000000 00000000
Q ss_pred h-----------ccCCCccccccccccccccceeeeEEEec-----CCchHHHHHHHHHhhhccccCceEEEEeecchhh
Q 010357 269 E-----------VEHPSTTMRSTTEDFKLPAQLVQRYVKVP-----CGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAV 332 (512)
Q Consensus 269 ~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~k~~~l~~~l~~~~~~~~~~~~lvf~~~~~~~ 332 (512)
. ............... .+........... ....+..+...+. .....++||||+++..+
T Consensus 282 ~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~g~~~~~~k~~~~~~~~~~~l~~l~~~l~----~~~~~~~IVF~~sr~~~ 356 (1010)
T 2xgj_A 282 KSTFREENFQKAMASISNQIGDDPNST-DSRGKKGQTYKGGSAKGDAKGDIYKIVKMIW----KKKYNPVIVFSFSKRDC 356 (1010)
T ss_dssp TCCBCHHHHHHHHHTCC-------------------------------CHHHHHHHHHH----HHTCCSEEEEESSHHHH
T ss_pred ccccchHHHHHHHHHHhhhhccccccc-ccccccccccccccccccchHHHHHHHHHHH----hcCCCCEEEEECCHHHH
Confidence 0 000000000000000 0000000000000 0222333333333 23346999999999999
Q ss_pred hhHHHhhhhhcCCCCCC-----------------Chh---HHH--hhhhccceeeecCCCCHHHHHHHHHhhhcCCCcEE
Q 010357 333 DFHYSLLSEFQWSPHSQ-----------------PDM---ELK--QLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALL 390 (512)
Q Consensus 333 ~~l~~~l~~~~~~~~~~-----------------~~~---~~~--~~~~~~~v~~l~g~~~~~~r~~~~~~f~~~~~~vL 390 (512)
+.++..|.......... .+. ... ...+..++..+||+|++.+|..+++.|++|.++||
T Consensus 357 e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gI~~~Hggl~~~eR~~ve~~F~~G~ikVL 436 (1010)
T 2xgj_A 357 EELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVL 436 (1010)
T ss_dssp HHHHHTTTTSCCCCHHHHHHHHHHHHHHHTTSCGGGTTCHHHHHHHHHHHHTEEEESTTSCHHHHHHHHHHHHTTCCSEE
T ss_pred HHHHHHHHhCCCCChHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHHhCCeeEECCCCCHHHHHHHHHHHhcCCCcEE
Confidence 99999997753321100 000 000 01224568999999999999999999999999999
Q ss_pred EeecccccCCCCCCCcEEEE----eCC----CCChhHHHHhhhhcccCCC--CccEEEecCcc-chhHHHHHHH
Q 010357 391 LSTDVAARGLDFPKVKCIIQ----YDS----AGEATEYVHRVGRTARLGE--RGDSLLFLQPV-EMDYLQDLEK 453 (512)
Q Consensus 391 vaT~~~~~Gldip~~~~VI~----~~~----p~s~~~~~Q~~GRagR~g~--~g~~~~~~~~~-~~~~~~~l~~ 453 (512)
|||+++++|+|+|++++||+ |+. |.++.+|+||+|||||.|. .|.|++++++. +...+..+..
T Consensus 437 VAT~~la~GIDiP~~~vVI~~~~kfd~~~~rp~s~~~y~Qr~GRAGR~G~d~~G~vi~l~~~~~e~~~~~~l~~ 510 (1010)
T 2xgj_A 437 FATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKGMVK 510 (1010)
T ss_dssp EEEGGGGGSTTCCBSEEEESCSEEECSSCEEECCHHHHHHHHTTBCCTTTCSSEEEEEEECSCCCHHHHHHHHS
T ss_pred EEehHhhccCCCCCceEEEeCCcccCCcCCccCCHHHHhHhhhhcccCCCCCceEEEEEECCCCCHHHHHHHHh
Confidence 99999999999999999999 998 8899999999999999997 49999999865 5566666654
No 26
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=100.00 E-value=2.9e-44 Score=383.27 Aligned_cols=388 Identities=16% Similarity=0.195 Sum_probs=216.4
Q ss_pred hcCCCCCcHHHHHHHHHhhcCCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHH
Q 010357 36 RLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHK 115 (512)
Q Consensus 36 ~~~~~~~~~~Q~~~~~~~~~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~ 115 (512)
.+|+..||++|.++++.+++|+++++++|||+|||++|++|++..+..... ..+.++||++|+++|+.|+.+.+..
T Consensus 243 ~~g~~~l~~~Q~~~i~~~l~~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~----~~~~~~Lvl~Pt~~L~~Q~~~~~~~ 318 (797)
T 4a2q_A 243 VYETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPA----GRKAKVVFLATKVPVYEQQKNVFKH 318 (797)
T ss_dssp -----CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCS----SCCCCEEEECSSHHHHHHHHHHHHH
T ss_pred hcCCCCCCHHHHHHHHHHHhCCCEEEEeCCCChHHHHHHHHHHHHHHhccc----cCCCeEEEEeCCHHHHHHHHHHHHH
Confidence 457888999999999999999999999999999999999999998876321 2267799999999999999999999
Q ss_pred HHhhcCCcceEEEeCCCchHHHHHHHcCCCCEEEeCChHHHHHHhhcCCCcCCceeEEEEcchhHHHhcCchHHHH-HHH
Q 010357 116 LLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIE-EIL 194 (512)
Q Consensus 116 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lV~DEah~l~~~~~~~~~~-~i~ 194 (512)
++...+ ..+..+.|+.........+..+++|+|+||++|.+.+.......+.++++||+||||++.+.+....+. ..+
T Consensus 319 ~~~~~~-~~v~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEaH~~~~~~~~~~i~~~~~ 397 (797)
T 4a2q_A 319 HFERQG-YSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYL 397 (797)
T ss_dssp HHGGGT-CCEEEECCC-----CHHHHHHTCSEEEECHHHHHHHHHSSSCCCGGGCSEEEETTGGGCSTTSHHHHHHHHHH
T ss_pred hcccCC-ceEEEEeCCcchhhhHHHhhCCCCEEEEchHHHHHHHHhccccccccCCEEEEECccccCCCccHHHHHHHHH
Confidence 987654 566777777766665666667899999999999998876433367789999999999988765333222 222
Q ss_pred HHhccCCCCCCCCCCcccccceeEEEEEEecchh--------hHHHHH--hhcCCCeEEccCCC--c----CCCCc-ccc
Q 010357 195 DILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEK--------VNHLAK--ISLETPVLIGLDEK--K----LPEDK-SHV 257 (512)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~--------~~~~~~--~~~~~~~~~~~~~~--~----~~~~~-~~~ 257 (512)
..... .....++++++|||+... ...+.. ..+....+...... . ..... ...
T Consensus 398 ~~~~~-----------~~~~~~~~l~lSATp~~~~~~~~~~~~~~i~~l~~~L~~~~i~~~~~~~~~l~~~~~~~~~~~~ 466 (797)
T 4a2q_A 398 EQKFN-----------SASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVR 466 (797)
T ss_dssp HHHHT-----------TCCCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHSCCCCCEEE
T ss_pred HHhhc-----------cCCCCCeEEEEcCCccccccccHHHHHHHHHHHHHhcCCcEEecccccHHHHHHhcCCCceEEE
Confidence 21110 011268999999999521 111111 11222222111110 0 00000 000
Q ss_pred ccCC-cccc-------h----hhhccC---------CCcccccc------ccc-------cccccc--------------
Q 010357 258 RFGS-LESD-------V----KEEVEH---------PSTTMRST------TED-------FKLPAQ-------------- 289 (512)
Q Consensus 258 ~~~~-~~~~-------~----~~~~~~---------~~~~~~~~------~~~-------~~~~~~-------------- 289 (512)
.... .... . ...... ........ ... ...+..
T Consensus 467 ~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~l~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 546 (797)
T 4a2q_A 467 LVKRRIHNPFAAIISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICT 546 (797)
T ss_dssp ECCCCSCCHHHHHHHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSSHHHHHHHHHHHHHHH
T ss_pred ecCCCCCcHHHHHHHHHHHHHHHHHHHHHhhHHhhhhccccccchhHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHH
Confidence 0000 0000 0 000000 00000000 000 000000
Q ss_pred ------------------------------------------------------eee-eEEEecCCchHHHHHHHHHhhh
Q 010357 290 ------------------------------------------------------LVQ-RYVKVPCGSRLAVLLSILKHLF 314 (512)
Q Consensus 290 ------------------------------------------------------~~~-~~~~~~~~~k~~~l~~~l~~~~ 314 (512)
+.. .......+.|+..+..++...+
T Consensus 547 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~ 626 (797)
T 4a2q_A 547 EHLRKYNDALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAY 626 (797)
T ss_dssp HHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTTHHHHHHHHHCTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhccccHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHh
Confidence 000 0000013568888888888766
Q ss_pred ccccCceEEEEeecchhhhhHHHhhhhhcCCCCCCChhHHHhhhhccceeeecCCCCHHHHHHHHHhhhc-CCCcEEEee
Q 010357 315 DTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKT-EKKALLLST 393 (512)
Q Consensus 315 ~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~l~g~~~~~~r~~~~~~f~~-~~~~vLvaT 393 (512)
....+.++||||+++..++.+++.|........- ....+.|.+...+||+|+..+|..+++.|++ |+.+|||||
T Consensus 627 ~~~~~~kvLIF~~~~~~~~~L~~~L~~~~~~~~~-----~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~~g~~~vLVaT 701 (797)
T 4a2q_A 627 RYNPQTRTLLFAKTRALVSALKKCMEENPILNYI-----KPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIAT 701 (797)
T ss_dssp HHCSSCCEEEEESSHHHHHHHHHHHHTCSTTCSC-----CCEEC----------------------------CCSEEEEE
T ss_pred ccCCCCeEEEEECcHHHHHHHHHHHHhCcccccc-----cceEEEecCCcccCCCCCHHHHHHHHHHhhccCCceEEEEc
Confidence 5667799999999999999999999763100000 0001125566778999999999999999999 999999999
Q ss_pred cccccCCCCCCCcEEEEeCCCCChhHHHHhhhhcccCCCCccEEEecCccchh
Q 010357 394 DVAARGLDFPKVKCIIQYDSAGEATEYVHRVGRTARLGERGDSLLFLQPVEMD 446 (512)
Q Consensus 394 ~~~~~Gldip~~~~VI~~~~p~s~~~~~Q~~GRagR~g~~g~~~~~~~~~~~~ 446 (512)
+++++|+|+|++++||+|++|+|+..|+||+|| ||. ++|.+++|+++.+..
T Consensus 702 ~~~~~GIDlp~v~~VI~yd~p~s~~~~iQr~GR-GR~-~~g~~i~l~~~~~~e 752 (797)
T 4a2q_A 702 SVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEVV 752 (797)
T ss_dssp CC-------CCCSEEEEESCCSCHHHHHTC---------CCCEEEEECCHHHH
T ss_pred CchhcCCCchhCCEEEEeCCCCCHHHHHHhcCC-CCC-CCceEEEEEeCCcHH
Confidence 999999999999999999999999999999999 999 889999999887643
No 27
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=100.00 E-value=7.8e-45 Score=384.68 Aligned_cols=387 Identities=19% Similarity=0.213 Sum_probs=223.2
Q ss_pred HHHHHhcCCCCCcHHHHHHHHHhhcCCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcHHHHHHHH
Q 010357 31 DQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVY 110 (512)
Q Consensus 31 ~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~ 110 (512)
..+ ..+|+.+||++|.++++.+++|+++++++|||+|||++|++|+++.+..... ..+.++||++||++|+.|+.
T Consensus 4 ~~l-~~~g~~~lr~~Q~~~i~~~l~g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~~----~~~~~~lvl~Pt~~L~~Q~~ 78 (696)
T 2ykg_A 4 SDT-NLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQ----GQKGKVVFFANQIPVYEQNK 78 (696)
T ss_dssp ----CTTC--CCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCT----TCCCCEEEECSSHHHHHHHH
T ss_pred Ccc-cccCCCCccHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHHHHhCcc----CCCCeEEEEECCHHHHHHHH
Confidence 455 4679999999999999999999999999999999999999999988766321 12367999999999999999
Q ss_pred HHHHHHHhhcCCcceEEEeCCCchHHHHHHHcCCCCEEEeCChHHHHHHhhcCCCcCCceeEEEEcchhHHHhcCchHHH
Q 010357 111 EILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEI 190 (512)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lV~DEah~l~~~~~~~~~ 190 (512)
+.+..++...+ ..+..+.|+.........+..+++|+|+||++|.+.+.......+.++++|||||||++.+......+
T Consensus 79 ~~~~~~~~~~~-~~v~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~L~~~l~~~~~~~l~~~~~vViDEaH~~~~~~~~~~i 157 (696)
T 2ykg_A 79 SVFSKYFERHG-YRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMI 157 (696)
T ss_dssp HHHHHHTTTTT-CCEEEECSSSCSSSCHHHHHHTCSEEEECHHHHHHHHHTTSSCCGGGCSEEEEETGGGCSTTCHHHHH
T ss_pred HHHHHHhccCC-ceEEEEeCCccccccHHHhccCCCEEEECHHHHHHHHhcCcccccccccEEEEeCCCcccCcccHHHH
Confidence 99999976444 45666777765544455555678999999999999987644335778999999999998765422222
Q ss_pred H-HHHHH-hccCCCCCCCCCCcccccceeEEEEEEecch--------hhHHHHHhh--cCCCeEEccCC-----------
Q 010357 191 E-EILDI-LGSRNIGSIGEGNEVSNVKRQNLLLSATLNE--------KVNHLAKIS--LETPVLIGLDE----------- 247 (512)
Q Consensus 191 ~-~i~~~-~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~--------~~~~~~~~~--~~~~~~~~~~~----------- 247 (512)
. ..+.. +.. .....++++++|||+.. ....+.... +..........
T Consensus 158 ~~~~l~~~~~~-----------~~~~~~~il~LTATp~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~l~~~~~~ 226 (696)
T 2ykg_A 158 MFNYLDQKLGG-----------SSGPLPQVIGLTASVGVGDAKTTDEALDYICKLCASLDASVIATVKHNLEELEQVVYK 226 (696)
T ss_dssp HHHHHHHHHTT-----------CCSCCCEEEEEESCCCCSSCCSHHHHHHHHHHHHHHTTCCEEECCCTTHHHHHHHSCC
T ss_pred HHHHHHHhhcc-----------cCCCCCeEEEEeCccccCccccHHHHHHHHHHHHHhcCCceEeecccchHHHHhhcCC
Confidence 1 12222 111 11126899999999961 122222221 11111100000
Q ss_pred --------CcCCCCccccccCCcccchhhh----ccCCCcc----------------------------cccccc-----
Q 010357 248 --------KKLPEDKSHVRFGSLESDVKEE----VEHPSTT----------------------------MRSTTE----- 282 (512)
Q Consensus 248 --------~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~----------------------------~~~~~~----- 282 (512)
...........+..+....... ...+... ......
T Consensus 227 p~~~~~~~~~~~~~~fs~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (696)
T 2ykg_A 227 PQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRIC 306 (696)
T ss_dssp CEEEEEECCCCSCCHHHHHHHHHHHHHHHHHHHHSTTGGGSSSCCSCCSSSHHHHHHHHHHHHTSCC------CCHHHHH
T ss_pred CceeEEecCcccCChHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHhhcccchhhhHHH
Confidence 0000000000000000000000 0000000 000000
Q ss_pred ---------------------------------------ccccccceeeeEEE----------------ecCCchHHHHH
Q 010357 283 ---------------------------------------DFKLPAQLVQRYVK----------------VPCGSRLAVLL 307 (512)
Q Consensus 283 ---------------------------------------~~~~~~~~~~~~~~----------------~~~~~k~~~l~ 307 (512)
.......+.+.+.. .....|...+.
T Consensus 307 ~~l~~~~~~l~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~k~~~L~ 386 (696)
T 2ykg_A 307 KALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLC 386 (696)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHhccchhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHH
Confidence 00000000000000 02456788888
Q ss_pred HHHHhhhccccCceEEEEeecchhhhhHHHhhhhhcCCCCCCChhHHHhhhhccceeee--------cCCCCHHHHHHHH
Q 010357 308 SILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRL--------HGNMKQEDRRTTF 379 (512)
Q Consensus 308 ~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~l--------~g~~~~~~r~~~~ 379 (512)
+++...+...++.++||||+++..++.+++.|...... ..+.+..+ ||+|+..+|..++
T Consensus 387 ~ll~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~-------------~~~~~~~l~G~~~~~~h~~~~~~eR~~v~ 453 (696)
T 2ykg_A 387 FILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKL-------------SFLKPGILTGRGKTNQNTGMTLPAQKCIL 453 (696)
T ss_dssp HHHHHHHTTCTTCCEEEECSCHHHHHHHHHHHHHCTTC-------------CSCCEEC----------------------
T ss_pred HHHHHHhccCCCCcEEEEeCcHHHHHHHHHHHHhCCCc-------------cccceeEEEccCCCccccCCCHHHHHHHH
Confidence 88887655556789999999999999999999886210 01455666 6699999999999
Q ss_pred Hhhhc-CCCcEEEeecccccCCCCCCCcEEEEeCCCCChhHHHHhhhhcccCCCCccEEEecCccchhHHH
Q 010357 380 GAFKT-EKKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRVGRTARLGERGDSLLFLQPVEMDYLQ 449 (512)
Q Consensus 380 ~~f~~-~~~~vLvaT~~~~~Gldip~~~~VI~~~~p~s~~~~~Q~~GRagR~g~~g~~~~~~~~~~~~~~~ 449 (512)
++|++ |+.+|||||+++++|+|+|++++||+||+|.++.+|+||+|| ||. ++|.++++++..+.....
T Consensus 454 ~~F~~~g~~~vLVaT~v~~~GiDip~v~~VI~~d~p~s~~~~~Qr~GR-GR~-~~g~~~~l~~~~~~~~~~ 522 (696)
T 2ykg_A 454 DAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRA-RGSKCFLLTSNAGVIEKE 522 (696)
T ss_dssp -------CCSCSEEEESSCCC---CCCSEEEEESCC--CCCC-----------CCCEEEEEESCHHHHHHH
T ss_pred HHHHhcCCccEEEEechhhcCCcCccCCEEEEeCCCCCHHHHHHhhcc-CcC-CCceEEEEecCCCHHHHH
Confidence 99998 999999999999999999999999999999999999999999 998 789999999987764433
No 28
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=100.00 E-value=2.3e-44 Score=389.87 Aligned_cols=354 Identities=18% Similarity=0.259 Sum_probs=263.5
Q ss_pred HHHHHHHHhcCCCCCcHHHHHHHHHhhcCCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcHHHHH
Q 010357 28 TLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCL 107 (512)
Q Consensus 28 ~~~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~ 107 (512)
.+.+.+...+||. |+++|+++++.+++|++++++||||||||++++.+++..+.. +.++||++||++|+.
T Consensus 66 ~~~~~~~~~~gf~-pt~iQ~~ai~~il~g~dvlv~ApTGSGKTl~~l~~il~~~~~---------~~~~Lil~PtreLa~ 135 (1104)
T 4ddu_A 66 DFRSFFKKKFGKD-LTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLARK---------GKKSALVFPTVTLVK 135 (1104)
T ss_dssp HHHHHHHHHSSSC-CCHHHHHHHHHHTTTCCEEECCSTTCCHHHHHHHHHHHHHTT---------TCCEEEEESSHHHHH
T ss_pred HHHHHHHHhcCCC-CCHHHHHHHHHHHcCCCEEEEeCCCCcHHHHHHHHHHHHHhc---------CCeEEEEechHHHHH
Confidence 4455666678996 999999999999999999999999999999888888887733 778999999999999
Q ss_pred HHHHHHHHHHhhcCCcceEEEeCCCch---HHHHHHHcCC-CCEEEeCChHHHHHHhhcCCCcCCceeEEEEcchhHHHh
Q 010357 108 QVYEILHKLLHRFHWIVPGYVMGGENR---SKEKARLRKG-ISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILE 183 (512)
Q Consensus 108 q~~~~~~~~~~~~~~~~~~~~~~g~~~---~~~~~~~~~~-~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lV~DEah~l~~ 183 (512)
|+.+.+..+. . ....+..+.||... ......+..+ ++|+|+||++|.+++.. +.+.++++||+||||++..
T Consensus 136 Q~~~~l~~l~-~-~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~---l~~~~l~~lViDEaH~l~~ 210 (1104)
T 4ddu_A 136 QTLERLQKLA-D-EKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK---LSQKRFDFVFVDDVDAVLK 210 (1104)
T ss_dssp HHHHHHHTTS-C-TTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHH---HHTSCCSEEEESCHHHHTT
T ss_pred HHHHHHHHhh-C-CCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHh---hcccCcCEEEEeCCCcccc
Confidence 9999999965 2 23567778888776 5666667665 99999999999887764 4456899999999987554
Q ss_pred -----------cCchHH-HHHHHHHhccCCCCCCCCCCcccccceeEEEEEEec-chhhHH-HHHhhcCCCeEEccCCCc
Q 010357 184 -----------LGFGKE-IEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATL-NEKVNH-LAKISLETPVLIGLDEKK 249 (512)
Q Consensus 184 -----------~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~-~~~~~~-~~~~~~~~~~~~~~~~~~ 249 (512)
.+|... +..++..++..... .........|++++|||+ +..+.. +....+. +.+...
T Consensus 211 ~~r~~Dr~L~~~gf~~~~i~~il~~l~~~~~~----~~~~~~~~~q~ll~SAT~~p~~~~~~~~~~~l~----i~v~~~- 281 (1104)
T 4ddu_A 211 ASRNIDTLLMMVGIPEEIIRKAFSTIKQGKIY----ERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN----FTVGRL- 281 (1104)
T ss_dssp SSHHHHHHHHTSSCCHHHHHHHHHHHHHTSCC----CCCSSCCCCEEEEECBSSCCCSSTTHHHHHHTC----CCCCBC-
T ss_pred ccccchhhhHhcCCCHHHHHHHHHhcccchhh----hhhccCCCceEEEEcCCCCcHHHHHHHhhccee----EEeccC-
Confidence 677777 88888887610000 000001278999999994 443331 2222111 111100
Q ss_pred CCCCccccccCCcccchhhhccCCCccccccccccccccceeeeEEEecCCchHHHHHHHHHhhhccccCceEEEEeecc
Q 010357 250 LPEDKSHVRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTC 329 (512)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~lvf~~~~ 329 (512)
.....++.+.+..+ ++...+..++... ++++||||+++
T Consensus 282 ----------------------------------~~~~~~i~~~~~~~---~k~~~L~~ll~~~-----~~~~LVF~~s~ 319 (1104)
T 4ddu_A 282 ----------------------------------VSVARNITHVRISS---RSKEKLVELLEIF-----RDGILIFAQTE 319 (1104)
T ss_dssp ----------------------------------CCCCCCEEEEEESC---CCHHHHHHHHHHH-----CSSEEEEESSS
T ss_pred ----------------------------------CCCcCCceeEEEec---CHHHHHHHHHHhc-----CCCEEEEECcH
Confidence 01233444444433 5667777777662 48999999999
Q ss_pred hhhhhHHHhhhhhcCCCCCCChhHHHhhhhcccee-eecCCCCHHHHHHHHHhhhcCCCcEEEe----ecccccCCCCCC
Q 010357 330 DAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTF-RLHGNMKQEDRRTTFGAFKTEKKALLLS----TDVAARGLDFPK 404 (512)
Q Consensus 330 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~v~-~l~g~~~~~~r~~~~~~f~~~~~~vLva----T~~~~~Gldip~ 404 (512)
..++.++..|... ++.+. .+||+ |.+ ++.|++|+.+|||| |+++++|+|+|+
T Consensus 320 ~~a~~l~~~L~~~-----------------g~~~~~~lhg~-----rr~-l~~F~~G~~~VLVatas~TdvlarGIDip~ 376 (1104)
T 4ddu_A 320 EEGKELYEYLKRF-----------------KFNVGETWSEF-----EKN-FEDFKVGKINILIGVQAYYGKLTRGVDLPE 376 (1104)
T ss_dssp HHHHHHHHHHHHT-----------------TCCEEESSSSH-----HHH-HHHHHHTSCSEEEEETTTHHHHCCSCCCTT
T ss_pred HHHHHHHHHHHhC-----------------CCCeeeEecCc-----HHH-HHHHHCCCCCEEEEecCCCCeeEecCcCCC
Confidence 9999999999987 77887 89983 555 99999999999999 999999999999
Q ss_pred -CcEEEEeCCCC--------------------------------------------------------------------
Q 010357 405 -VKCIIQYDSAG-------------------------------------------------------------------- 415 (512)
Q Consensus 405 -~~~VI~~~~p~-------------------------------------------------------------------- 415 (512)
+++||+||.|.
T Consensus 377 ~V~~VI~~d~P~~~~Sle~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~e~~~~~l~~~~~~~~i~~~~~~l~~~~~~~~ 456 (1104)
T 4ddu_A 377 RIKYVIFWGTPSMRFSLELDKAPRFVLARVLKEMGLIKAQENPDVEELRKIAKEHLTQKEFVEKVKEMFRGVVVKDEDLE 456 (1104)
T ss_dssp TCCEEEEESCCEEEEECSSSSCCHHHHHHHHHHHSSCSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHCCSSEEETTTTE
T ss_pred CCCEEEEECCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhhccceEEecCCeeE
Confidence 99999999998
Q ss_pred ----ChhHHHHhhhhcccCCC----CccEEEecCccchhHHHHHHHc-----CCC---CCccChhhHhhhccc
Q 010357 416 ----EATEYVHRVGRTARLGE----RGDSLLFLQPVEMDYLQDLEKH-----GVS---LTEYPLLKVLDSFPL 472 (512)
Q Consensus 416 ----s~~~~~Q~~GRagR~g~----~g~~~~~~~~~~~~~~~~l~~~-----~~~---~~~~~~~~~l~~~~~ 472 (512)
++.+|+||+||+||.|. .|.+++++ +|...++.|.+. +++ +++.+++++++.+..
T Consensus 457 ~~~pd~~tYihr~GRtgR~~~gg~~~Glsi~~~--~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 527 (1104)
T 4ddu_A 457 LIIPDVYTYIQASGRSSRILNGVLVKGVSVIFE--EDEEIFESLKTRLLLIAEEEIIEEAEANWKELVHEVEE 527 (1104)
T ss_dssp EEEECHHHHHHHHHTTCCEETTEECCEEEEEEC--CCHHHHHHHHHHHHHHTCCCEEEGGGCCHHHHHHHHHH
T ss_pred EEecChhhhhcccCchhcccCCCcccceEEEEE--ecHHHHHHHHHHHhhhcccccccccccCHHHHHHHHhH
Confidence 77899999999999765 35566666 566666666652 232 235666777766543
No 29
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=1.7e-43 Score=395.95 Aligned_cols=377 Identities=16% Similarity=0.151 Sum_probs=266.7
Q ss_pred CCCHHHHHHHHHhcCCCCCcHHHHHHHHHhh-cCCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCc
Q 010357 24 GLHSTLCDQLRERLGFEAPTKVQAQAIPVIL-SGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPT 102 (512)
Q Consensus 24 ~l~~~~~~~l~~~~~~~~~~~~Q~~~~~~~~-~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt 102 (512)
.++.+..+.+.. .+|..++|+|.++++.++ +++|++++||||||||++|.++++..+.+ ..+.+++|++|+
T Consensus 910 ~L~~~~~e~l~~-~~f~~fnpiQ~q~~~~l~~~~~nvlv~APTGSGKTliaelail~~l~~-------~~~~kavyi~P~ 981 (1724)
T 4f92_B 910 ALRNSAFESLYQ-DKFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQ-------SSEGRCVYITPM 981 (1724)
T ss_dssp GSCCHHHHTTTT-TTCSBCCHHHHHHHHHHHSCCSCEEEECCTTSCCHHHHHHHHHHHHHH-------CTTCCEEEECSC
T ss_pred cccCHHHHHHHH-hcCCCCCHHHHHHHHHHhcCCCcEEEEeCCCCCchHHHHHHHHHHHHh-------CCCCEEEEEcCh
Confidence 455566777744 389999999999999987 45789999999999999999999999876 346679999999
Q ss_pred HHHHHHHHHHHHHHHhhcCCcceEEEeCCCchHHHHHHHcCCCCEEEeCChHHHHHHhhcCCC-cCCceeEEEEcchhHH
Q 010357 103 RELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSF-LHTNLRWIIFDEADRI 181 (512)
Q Consensus 103 ~~L~~q~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~-~~~~~~~lV~DEah~l 181 (512)
++|+.|.++.+...+...-...++.+.|+... +. .....++|+|+|||++..++.+.... .++++++||+||+|.+
T Consensus 982 raLa~q~~~~~~~~f~~~~g~~V~~ltGd~~~-~~--~~~~~~~IiV~TPEkld~llr~~~~~~~l~~v~lvViDE~H~l 1058 (1724)
T 4f92_B 982 EALAEQVYMDWYEKFQDRLNKKVVLLTGETST-DL--KLLGKGNIIISTPEKWDILSRRWKQRKNVQNINLFVVDEVHLI 1058 (1724)
T ss_dssp HHHHHHHHHHHHHHHTTTSCCCEEECCSCHHH-HH--HHHHHCSEEEECHHHHHHHHTTTTTCHHHHSCSEEEECCGGGG
T ss_pred HHHHHHHHHHHHHHhchhcCCEEEEEECCCCc-ch--hhcCCCCEEEECHHHHHHHHhCcccccccceeeEEEeechhhc
Confidence 99999999998776543222455555554332 22 22345799999999998777653332 3568999999999987
Q ss_pred HhcCchHHHHHHHHHhccCCCCCCCCCCcccccceeEEEEEEecchhhHHHHHhhcCCCeEEccCCCcCCCCccccccCC
Q 010357 182 LELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLPEDKSHVRFGS 261 (512)
Q Consensus 182 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (512)
.+ .++..++.++.++.... ...+...|++++|||+++..+...++.........+.....
T Consensus 1059 ~d-~rg~~le~il~rl~~i~--------~~~~~~~riI~lSATl~N~~dla~WL~~~~~~~~~~~~~~R----------- 1118 (1724)
T 4f92_B 1059 GG-ENGPVLEVICSRMRYIS--------SQIERPIRIVALSSSLSNAKDVAHWLGCSATSTFNFHPNVR----------- 1118 (1724)
T ss_dssp GS-TTHHHHHHHHHHHHHHH--------HTTSSCCEEEEEESCBTTHHHHHHHHTCCSTTEEECCGGGC-----------
T ss_pred CC-CCCccHHHHHHHHHHHH--------hhcCCCceEEEEeCCCCCHHHHHHHhCCCCCCeEEeCCCCC-----------
Confidence 66 47888887777664211 01122789999999998754433333322222222222211
Q ss_pred cccchhhhccCCCccccccccccccccceeeeEEEecCCchHH-------HHHHHHHhhhccccCceEEEEeecchhhhh
Q 010357 262 LESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCGSRLA-------VLLSILKHLFDTEVSQKLVVFFSTCDAVDF 334 (512)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~-------~l~~~l~~~~~~~~~~~~lvf~~~~~~~~~ 334 (512)
|..+...+...+...... .+...+.. ...++++||||++++.|+.
T Consensus 1119 -------------------------PvpL~~~i~~~~~~~~~~~~~~~~~~~~~~i~~---~~~~~~~lVF~~sR~~~~~ 1170 (1724)
T 4f92_B 1119 -------------------------PVPLELHIQGFNISHTQTRLLSMAKPVYHAITK---HSPKKPVIVFVPSRKQTRL 1170 (1724)
T ss_dssp -------------------------SSCEEEEEEEECCCSHHHHHHTTHHHHHHHHHH---HCSSSCEEEEESSHHHHHH
T ss_pred -------------------------CCCeEEEEEeccCCCchhhhhhhcchHHHHHHH---hcCCCCeeeeCCCHHHHHH
Confidence 112222222222222111 12223332 3456899999999999999
Q ss_pred HHHhhhhhcCCCCC------------------CChhHHHhhhhccceeeecCCCCHHHHHHHHHhhhcCCCcEEEeeccc
Q 010357 335 HYSLLSEFQWSPHS------------------QPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVA 396 (512)
Q Consensus 335 l~~~l~~~~~~~~~------------------~~~~~~~~~~~~~~v~~l~g~~~~~~r~~~~~~f~~~~~~vLvaT~~~ 396 (512)
.+..|......... ..+..+.. .+..++..+||+|++.+|..+++.|++|.++|||||+++
T Consensus 1171 ~A~~L~~~~~~~~~~~~~~~~~~~~l~~~l~~~~d~~L~~-~l~~GIa~hHagL~~~~R~~VE~lF~~G~i~VLvaT~tl 1249 (1724)
T 4f92_B 1171 TAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLSDSTLKE-TLLNGVGYLHEGLSPMERRLVEQLFSSGAIQVVVASRSL 1249 (1724)
T ss_dssp HHHHHHHHHHHTTCTTTTBCSCHHHHHHHHTTCCCHHHHH-HHHTTEEEECTTSCHHHHHHHHHHHHHTSBCEEEEEGGG
T ss_pred HHHHHHHHHhhccchhhhhcccHHHHHHHHhhcccHHHHH-HHhCCEEEECCCCCHHHHHHHHHHHHCCCCeEEEEChHH
Confidence 98887553221110 01122222 336789999999999999999999999999999999999
Q ss_pred ccCCCCCCCcEEEE----e------CCCCChhHHHHhhhhcccCCC--CccEEEecCccchhHHHHHHHcCCCCCc
Q 010357 397 ARGLDFPKVKCIIQ----Y------DSAGEATEYVHRVGRTARLGE--RGDSLLFLQPVEMDYLQDLEKHGVSLTE 460 (512)
Q Consensus 397 ~~Gldip~~~~VI~----~------~~p~s~~~~~Q~~GRagR~g~--~g~~~~~~~~~~~~~~~~l~~~~~~~~~ 460 (512)
++|||+|+..+||. | ..|.++.+|.||+|||||.|. .|.|++++.+.+..+++.+.....+++.
T Consensus 1250 A~GVnlPa~~VVI~~~~~~dg~~~~~~~~s~~~~~Qm~GRAGR~g~d~~G~avll~~~~~~~~~~~ll~~~~pveS 1325 (1724)
T 4f92_B 1250 CWGMNVAAHLVIIMDTQYYNGKIHAYVDYPIYDVLQMVGHANRPLQDDEGRCVIMCQGSKKDFFKKFLYEPLPVES 1325 (1724)
T ss_dssp SSSCCCCBSEEEEECSEEEETTTTEEEECCHHHHHHHHTTBCCTTTCSCEEEEEEEEGGGHHHHHHHTTSCBCCCC
T ss_pred HcCCCCCccEEEEecCccccCcccccCCCCHHHHHHhhccccCCCCCCceEEEEEecchHHHHHHHHhCCCCceee
Confidence 99999999988883 2 236789999999999999987 6899999999999999888876665543
No 30
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=9.6e-43 Score=354.30 Aligned_cols=360 Identities=19% Similarity=0.200 Sum_probs=249.3
Q ss_pred CCcHHHHHHHHHhhcCCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHHhhc
Q 010357 41 APTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRF 120 (512)
Q Consensus 41 ~~~~~Q~~~~~~~~~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~ 120 (512)
.|++||.++++.++++ ++++.+|||+|||+++++++...+.. .+.++||++|+++|+.||.+.+..++..
T Consensus 9 ~l~~~Q~~~i~~~~~~-~~ll~~~tG~GKT~~~~~~~~~~~~~--------~~~~~liv~P~~~L~~q~~~~~~~~~~~- 78 (494)
T 1wp9_A 9 QPRIYQEVIYAKCKET-NCLIVLPTGLGKTLIAMMIAEYRLTK--------YGGKVLMLAPTKPLVLQHAESFRRLFNL- 78 (494)
T ss_dssp CCCHHHHHHHHHGGGS-CEEEECCTTSCHHHHHHHHHHHHHHH--------SCSCEEEECSSHHHHHHHHHHHHHHBCS-
T ss_pred CccHHHHHHHHHHhhC-CEEEEcCCCCCHHHHHHHHHHHHHhc--------CCCeEEEEECCHHHHHHHHHHHHHHhCc-
Confidence 4999999999999999 99999999999999999999887762 2567999999999999999999988632
Q ss_pred CCcceEEEeCCCchHHHHHHHcCCCCEEEeCChHHHHHHhhcCCCcCCceeEEEEcchhHHHhcCchHHHHHHHHHhccC
Q 010357 121 HWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILGSR 200 (512)
Q Consensus 121 ~~~~~~~~~~g~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lV~DEah~l~~~~~~~~~~~i~~~~~~~ 200 (512)
....+..+.|+..... .......++|+|+||+.+.+.+.. ..+.+.++++||+||||++.+......+...+.....
T Consensus 79 ~~~~v~~~~g~~~~~~-~~~~~~~~~ivv~T~~~l~~~~~~-~~~~~~~~~~vIiDEaH~~~~~~~~~~~~~~~~~~~~- 155 (494)
T 1wp9_A 79 PPEKIVALTGEKSPEE-RSKAWARAKVIVATPQTIENDLLA-GRISLEDVSLIVFDEAHRAVGNYAYVFIAREYKRQAK- 155 (494)
T ss_dssp CGGGEEEECSCSCHHH-HHHHHHHCSEEEECHHHHHHHHHT-TSCCTTSCSEEEEETGGGCSTTCHHHHHHHHHHHHCS-
T ss_pred chhheEEeeCCcchhh-hhhhccCCCEEEecHHHHHHHHhc-CCcchhhceEEEEECCcccCCCCcHHHHHHHHHhcCC-
Confidence 2235555666655443 333444679999999999998775 4456678999999999998765544555555544433
Q ss_pred CCCCCCCCCcccccceeEEEEEEecchhhHHH---HHhhcCCCeEEccCCC-cCCCCcccccc----CCcccchhh----
Q 010357 201 NIGSIGEGNEVSNVKRQNLLLSATLNEKVNHL---AKISLETPVLIGLDEK-KLPEDKSHVRF----GSLESDVKE---- 268 (512)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~---~~~~~~~~~~~~~~~~-~~~~~~~~~~~----~~~~~~~~~---- 268 (512)
..+++++|||+.+....+ ................ ........... .........
T Consensus 156 --------------~~~~l~lTaTp~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (494)
T 1wp9_A 156 --------------NPLVIGLTASPGSTPEKIMEVINNLGIEHIEYRSENSPDVRPYVKGIRFEWVRVDLPEIYKEVRKL 221 (494)
T ss_dssp --------------SCCEEEEESCSCSSHHHHHHHHHHTTCCEEEECCTTSTTTGGGCCCCCEEEEEECCCHHHHHHHHH
T ss_pred --------------CCeEEEEecCCCCCcHHHHHHHHhcChheeeccCCCcHHHHHhcCCCceeEEecCCcHHHHHHHHH
Confidence 788999999998543333 3222222211111111 00000000000 000000000
Q ss_pred -------------hccCCCccccc--------------------ccccccc---------------------ccceeee-
Q 010357 269 -------------EVEHPSTTMRS--------------------TTEDFKL---------------------PAQLVQR- 293 (512)
Q Consensus 269 -------------~~~~~~~~~~~--------------------~~~~~~~---------------------~~~~~~~- 293 (512)
........... ....+.. .......
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (494)
T 1wp9_A 222 LREMLRDALKPLAETGLLESSSPDIPKKEVLRAGQIINEEMAKGNHDLRGLLLYHAMALKLHHAIELLETQGLSALRAYI 301 (494)
T ss_dssp HHHHHHHHHHHHHHHTSSSCCCTTSCHHHHHHHHHHHHHHHTTTCCSTTTHHHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccccccCCCcchhHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhhcHHHHHHHH
Confidence 00000000000 0000000 0000000
Q ss_pred ----------------------------------EEEecCCchHHHHHHHHHhhhccccCceEEEEeecchhhhhHHHhh
Q 010357 294 ----------------------------------YVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLL 339 (512)
Q Consensus 294 ----------------------------------~~~~~~~~k~~~l~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l 339 (512)
......+.|...+.+++...+....+.++||||+++..++.+++.|
T Consensus 302 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L 381 (494)
T 1wp9_A 302 KKLYEEAKAGSTKASKEIFSDKRMKKAISLLVQAKEIGLDHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNEL 381 (494)
T ss_dssp HHHHHHHHTTCCHHHHHHHTSHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHH
T ss_pred HHHHHhhccccchhhhhhhhhHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhccCCCCeEEEEEccHHHHHHHHHHH
Confidence 0000345678888888887664456889999999999999999999
Q ss_pred hhhcCCCCCCChhHHHhhhhccceeeecC--------CCCHHHHHHHHHhhhcCCCcEEEeecccccCCCCCCCcEEEEe
Q 010357 340 SEFQWSPHSQPDMELKQLFLRCKTFRLHG--------NMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQY 411 (512)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~v~~l~g--------~~~~~~r~~~~~~f~~~~~~vLvaT~~~~~Gldip~~~~VI~~ 411 (512)
... ++.+..+|| +|+..+|..++++|++|+.+|||||+++++|+|+|++++||++
T Consensus 382 ~~~-----------------~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~~~~~vLv~T~~~~~Gldl~~~~~Vi~~ 444 (494)
T 1wp9_A 382 VKD-----------------GIKAKRFVGQASKENDRGLSQREQKLILDEFARGEFNVLVATSVGEEGLDVPEVDLVVFY 444 (494)
T ss_dssp HHT-----------------TCCEEEECCSSCC-------CCHHHHHHHHHHHTSCSEEEECGGGGGGGGSTTCCEEEES
T ss_pred HHc-----------------CCCcEEEeccccccccccCCHHHHHHHHHHHhcCCceEEEECCccccCCCchhCCEEEEe
Confidence 987 778999999 9999999999999999999999999999999999999999999
Q ss_pred CCCCChhHHHHhhhhcccCCCCccEEEecCccch
Q 010357 412 DSAGEATEYVHRVGRTARLGERGDSLLFLQPVEM 445 (512)
Q Consensus 412 ~~p~s~~~~~Q~~GRagR~g~~g~~~~~~~~~~~ 445 (512)
++|+++..|.||+||+||.|+ |.++.++.+++.
T Consensus 445 d~~~~~~~~~Qr~GR~~R~g~-g~~~~l~~~~t~ 477 (494)
T 1wp9_A 445 EPVPSAIRSIQRRGRTGRHMP-GRVIILMAKGTR 477 (494)
T ss_dssp SCCHHHHHHHHHHTTSCSCCC-SEEEEEEETTSH
T ss_pred CCCCCHHHHHHHHhhccCCCC-ceEEEEEecCCH
Confidence 999999999999999999998 999999988753
No 31
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=100.00 E-value=5.4e-43 Score=356.81 Aligned_cols=367 Identities=15% Similarity=0.179 Sum_probs=254.1
Q ss_pred hcCCCCCcHHHHHHHHHhhcCCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHH
Q 010357 36 RLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHK 115 (512)
Q Consensus 36 ~~~~~~~~~~Q~~~~~~~~~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~ 115 (512)
.+|| +|+++|..+++.+++|+ +..++||+|||++|.+|++..... +..++|++||++||.|.++++..
T Consensus 79 ~lG~-~pt~VQ~~~ip~ll~G~--Iaea~TGeGKTlaf~LP~~l~aL~---------g~~vlVltptreLA~qd~e~~~~ 146 (844)
T 1tf5_A 79 VTGM-FPFKVQLMGGVALHDGN--IAEMKTGEGKTLTSTLPVYLNALT---------GKGVHVVTVNEYLASRDAEQMGK 146 (844)
T ss_dssp HHSC-CCCHHHHHHHHHHHTTS--EEECCTTSCHHHHHHHHHHHHHTT---------SSCEEEEESSHHHHHHHHHHHHH
T ss_pred HcCC-CCcHHHHHhhHHHhCCC--EEEccCCcHHHHHHHHHHHHHHHc---------CCCEEEEeCCHHHHHHHHHHHHH
Confidence 4699 79999999999999997 999999999999999999854333 56799999999999999999999
Q ss_pred HHhhcCCcceEEEeCCCchHHHHHHHcCCCCEEEeCChHH-HHHHhhc-----CCCcCCceeEEEEcchhHHH-hcC---
Q 010357 116 LLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRL-LDHLKHT-----SSFLHTNLRWIIFDEADRIL-ELG--- 185 (512)
Q Consensus 116 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~Iiv~Tp~~l-~~~l~~~-----~~~~~~~~~~lV~DEah~l~-~~~--- 185 (512)
+...++ +.+++++||.+..... ...+++|+|+||++| ++++... ..+.+..+.++|+||||+++ +.+
T Consensus 147 l~~~lg-l~v~~i~gg~~~~~r~--~~~~~dIv~gTpgrlgfD~L~D~m~~~~~~l~lr~~~~lVlDEaD~mLiDea~tp 223 (844)
T 1tf5_A 147 IFEFLG-LTVGLNLNSMSKDEKR--EAYAADITYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAVIDEVDSILIDEARTP 223 (844)
T ss_dssp HHHHTT-CCEEECCTTSCHHHHH--HHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEEETHHHHHTTTTTCE
T ss_pred HHhhcC-CeEEEEeCCCCHHHHH--HhcCCCEEEECchhhhHHHHHHhhhcchhhhcccCCCEEEECchhhhhhhccccc
Confidence 988876 5677788887654333 334689999999999 6665542 23566789999999999998 553
Q ss_pred ------------chHHHHHHHHHhccCCCCCCCCCCcccccceeEE-----------------EEEEecchhhHHHH---
Q 010357 186 ------------FGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNL-----------------LLSATLNEKVNHLA--- 233 (512)
Q Consensus 186 ------------~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i-----------------~~SAT~~~~~~~~~--- 233 (512)
|...+..++..++... .-..-....+++ ++|||.+.....+.
T Consensus 224 lIisg~~~~~~~~~~~i~~iv~~l~~~~------~y~vd~k~rq~~lt~~g~~~~e~~~~i~~Lfsat~~~~~~~i~~al 297 (844)
T 1tf5_A 224 LIISGQAAKSTKLYVQANAFVRTLKAEK------DYTYDIKTKAVQLTEEGMTKAEKAFGIDNLFDVKHVALNHHINQAL 297 (844)
T ss_dssp EEEEEEEECCCHHHHHHHHHHTTCCSSS------SBCCCSSSCCCCBCHHHHHHHHHHTTCSCTTSGGGHHHHHHHHHHH
T ss_pred hhhcCCcccchhHHHHHHHHHHhCcccc------cceeccccceEEecHHHHHHHHHHhCccccCCCccchhHHHHHHHH
Confidence 5677888887775300 000001134555 78999764322221
Q ss_pred --Hhhc-CCCeEEccC------CCcCCCCccccccCCcccchhhhccCCCccccc------------------------c
Q 010357 234 --KISL-ETPVLIGLD------EKKLPEDKSHVRFGSLESDVKEEVEHPSTTMRS------------------------T 280 (512)
Q Consensus 234 --~~~~-~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------~ 280 (512)
...+ .+..++..+ ............|.+.........+........ .
T Consensus 298 ~A~~l~~~d~dYiv~dg~v~ivDe~tgr~m~grr~sdGLhqaieake~v~I~~e~~t~a~It~q~~fr~y~kl~GmTGTa 377 (844)
T 1tf5_A 298 KAHVAMQKDVDYVVEDGQVVIVDSFTGRLMKGRRYSEGLHQAIEAKEGLEIQNESMTLATITFQNYFRMYEKLAGMTGTA 377 (844)
T ss_dssp HHHHTCCBTTTEEEETTEEEEBCTTTCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEEEHHHHHTTSSEEEEEESCC
T ss_pred HHHHHhhcCCceEEecCeeEEeecccccccCCCccchhhHHHHhhcccceecccccccceeeHHHHHHHHhhhccCCccc
Confidence 1122 222222111 111111111111111100000000000000000 0
Q ss_pred ------------ccccccccc------eeeeEEEecCCchHHHHHHHHHhhhccccCceEEEEeecchhhhhHHHhhhhh
Q 010357 281 ------------TEDFKLPAQ------LVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEF 342 (512)
Q Consensus 281 ------------~~~~~~~~~------~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~ 342 (512)
.....+|.+ -.+.++.....+|...+...+.... ..+.++||||+|++.++.++..|...
T Consensus 378 ~te~~e~~~iY~l~vv~IPtn~p~~r~d~~d~v~~~~~~K~~al~~~i~~~~--~~~~pvLVft~s~~~se~Ls~~L~~~ 455 (844)
T 1tf5_A 378 KTEEEEFRNIYNMQVVTIPTNRPVVRDDRPDLIYRTMEGKFKAVAEDVAQRY--MTGQPVLVGTVAVETSELISKLLKNK 455 (844)
T ss_dssp GGGHHHHHHHHCCCEEECCCSSCCCCEECCCEEESSHHHHHHHHHHHHHHHH--HHTCCEEEEESCHHHHHHHHHHHHTT
T ss_pred chhHHHHHHHhCCceEEecCCCCcccccCCcEEEeCHHHHHHHHHHHHHHHH--hcCCcEEEEECCHHHHHHHHHHHHHC
Confidence 000001111 0122444556678888888776542 34578999999999999999999988
Q ss_pred cCCCCCCChhHHHhhhhccceeeecCCCCHHHHHHHHHhhhcCCCcEEEeecccccCCCCC--------CCcEEEEeCCC
Q 010357 343 QWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFP--------KVKCIIQYDSA 414 (512)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~v~~l~g~~~~~~r~~~~~~f~~~~~~vLvaT~~~~~Gldip--------~~~~VI~~~~p 414 (512)
++++..+||++...+|..+.+.|+.| .|+|||+++++|+|++ ++.+||+++.|
T Consensus 456 -----------------gi~~~vLhg~~~~rEr~ii~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~ggl~VIn~d~p 516 (844)
T 1tf5_A 456 -----------------GIPHQVLNAKNHEREAQIIEEAGQKG--AVTIATNMAGRGTDIKLGEGVKELGGLAVVGTERH 516 (844)
T ss_dssp -----------------TCCCEEECSSCHHHHHHHHTTTTSTT--CEEEEETTSSTTCCCCCCTTSGGGTSEEEEESSCC
T ss_pred -----------------CCCEEEeeCCccHHHHHHHHHcCCCC--eEEEeCCccccCcCccccchhhhcCCcEEEEecCC
Confidence 88999999999888888787777766 7999999999999999 78899999999
Q ss_pred CChhHHHHhhhhcccCCCCccEEEecCccc
Q 010357 415 GEATEYVHRVGRTARLGERGDSLLFLQPVE 444 (512)
Q Consensus 415 ~s~~~~~Q~~GRagR~g~~g~~~~~~~~~~ 444 (512)
.+...|.||+||+||.|.+|.++.|++..|
T Consensus 517 ~s~r~y~hr~GRTGRqG~~G~s~~~vs~eD 546 (844)
T 1tf5_A 517 ESRRIDNQLRGRSGRQGDPGITQFYLSMED 546 (844)
T ss_dssp SSHHHHHHHHTTSSGGGCCEEEEEEEETTS
T ss_pred CCHHHHHhhcCccccCCCCCeEEEEecHHH
Confidence 999999999999999999999999998776
No 32
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=100.00 E-value=3.8e-43 Score=365.68 Aligned_cols=328 Identities=21% Similarity=0.279 Sum_probs=236.0
Q ss_pred CHHHHHHHHHhcCCCCCcHHHHHHHHHhhcC------CCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEE
Q 010357 26 HSTLCDQLRERLGFEAPTKVQAQAIPVILSG------RHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVL 99 (512)
Q Consensus 26 ~~~~~~~l~~~~~~~~~~~~Q~~~~~~~~~~------~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil 99 (512)
...+.+.+.+.+|| +|+++|+++++.++++ .++++++|||||||++|+++++..+.. +.+++|+
T Consensus 354 ~~~~~~~~~~~lpf-~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~~---------g~qvlvl 423 (780)
T 1gm5_A 354 EGKLAEEFIKSLPF-KLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEA---------GFQTAFM 423 (780)
T ss_dssp CTHHHHHHHHHSSS-CCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHH---------TSCEEEE
T ss_pred chHHHHHHHHhCCC-CCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHc---------CCeEEEE
Confidence 34566666688999 6999999999998865 589999999999999999999998866 6789999
Q ss_pred cCcHHHHHHHHHHHHHHHhhcCCcceEEEeCCCchHHH---HHHHcC-CCCEEEeCChHHHHHHhhcCCCcCCceeEEEE
Q 010357 100 VPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKE---KARLRK-GISILVATPGRLLDHLKHTSSFLHTNLRWIIF 175 (512)
Q Consensus 100 ~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~g~~~~~~---~~~~~~-~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lV~ 175 (512)
+||++|+.|+++.+..++...+ ..+..+.|+...... ...+.. .++|+|+||+.+.+ ...+.++++||+
T Consensus 424 aPtr~La~Q~~~~l~~~~~~~g-i~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~------~~~~~~l~lVVI 496 (780)
T 1gm5_A 424 VPTSILAIQHYRRTVESFSKFN-IHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQE------DVHFKNLGLVII 496 (780)
T ss_dssp CSCHHHHHHHHHHHHHHHTCSS-CCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHH------CCCCSCCCEEEE
T ss_pred eCcHHHHHHHHHHHHHHhhhcC-ceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhh------hhhccCCceEEe
Confidence 9999999999999999987555 456677777665543 233334 48999999998754 234568999999
Q ss_pred cchhHHHhcCchHHHHHHHHHhccCCCCCCCCCCcccccceeEEEEEEecchhhHHHHHhhcCCCeEEccCCCcCCCCcc
Q 010357 176 DEADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLPEDKS 255 (512)
Q Consensus 176 DEah~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (512)
||+|++.. ..... +. .....++++++|||+.+...........+...+...+..
T Consensus 497 DEaHr~g~-----~qr~~---l~------------~~~~~~~vL~mSATp~p~tl~~~~~g~~~~s~i~~~p~~------ 550 (780)
T 1gm5_A 497 DEQHRFGV-----KQREA---LM------------NKGKMVDTLVMSATPIPRSMALAFYGDLDVTVIDEMPPG------ 550 (780)
T ss_dssp ESCCCC----------CC---CC------------SSSSCCCEEEEESSCCCHHHHHHHTCCSSCEEECCCCSS------
T ss_pred cccchhhH-----HHHHH---HH------------HhCCCCCEEEEeCCCCHHHHHHHHhCCcceeeeeccCCC------
Confidence 99998421 11110 00 011268899999998765443332111111111100000
Q ss_pred ccccCCcccchhhhccCCCccccccccccccccceeeeEEEecCCchHHHHHHHHHhhhccccCceEEEEeecchh----
Q 010357 256 HVRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDA---- 331 (512)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~lvf~~~~~~---- 331 (512)
...+. .......+...+...+.+.. ..+.+++|||++.+.
T Consensus 551 -------------------------------r~~i~---~~~~~~~~~~~l~~~i~~~l--~~g~qvlVf~~~ie~se~l 594 (780)
T 1gm5_A 551 -------------------------------RKEVQ---TMLVPMDRVNEVYEFVRQEV--MRGGQAFIVYPLIEESDKL 594 (780)
T ss_dssp -------------------------------CCCCE---ECCCCSSTHHHHHHHHHHHT--TTSCCBCCBCCCC------
T ss_pred -------------------------------CcceE---EEEeccchHHHHHHHHHHHH--hcCCcEEEEecchhhhhhh
Confidence 00000 11112334455666666543 346799999997654
Q ss_pred ----hhhHHHhhhhhcCCCCCCChhHHHhhhhccceeeecCCCCHHHHHHHHHhhhcCCCcEEEeecccccCCCCCCCcE
Q 010357 332 ----VDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKC 407 (512)
Q Consensus 332 ----~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~l~g~~~~~~r~~~~~~f~~~~~~vLvaT~~~~~Gldip~~~~ 407 (512)
++.+++.|.+. .+++..+..+||+|+..+|+.+++.|++|+.+|||||+++++|+|+|++++
T Consensus 595 ~~~~a~~l~~~L~~~--------------~~~~~~v~~lHG~m~~~eR~~v~~~F~~G~~~ILVaT~vie~GIDiP~v~~ 660 (780)
T 1gm5_A 595 NVKSAVEMYEYLSKE--------------VFPEFKLGLMHGRLSQEEKDRVMLEFAEGRYDILVSTTVIEVGIDVPRANV 660 (780)
T ss_dssp --CHHHHHHHSGGGS--------------CC---CBCCCCSSSCCSCSHHHHHHHTTTSSSBCCCSSCCCSCSCCTTCCE
T ss_pred hHHHHHHHHHHHHhh--------------hcCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEECCCCCccccCCCCCE
Confidence 55666666551 123778999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCC-ChhHHHHhhhhcccCCCCccEEEecCccchh
Q 010357 408 IIQYDSAG-EATEYVHRVGRTARLGERGDSLLFLQPVEMD 446 (512)
Q Consensus 408 VI~~~~p~-s~~~~~Q~~GRagR~g~~g~~~~~~~~~~~~ 446 (512)
||+++.|. +...|.||+||+||.|++|.|++++++.+..
T Consensus 661 VIi~d~~r~~l~~l~Qr~GRaGR~g~~g~~ill~~~~~~~ 700 (780)
T 1gm5_A 661 MVIENPERFGLAQLHQLRGRVGRGGQEAYCFLVVGDVGEE 700 (780)
T ss_dssp EEBCSCSSSCTTHHHHHHHTSCCSSTTCEEECCCCSCCHH
T ss_pred EEEeCCCCCCHHHHHHHhcccCcCCCCCEEEEEECCCChH
Confidence 99999996 7889999999999999999999999854433
No 33
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=100.00 E-value=2.3e-43 Score=382.67 Aligned_cols=335 Identities=20% Similarity=0.262 Sum_probs=249.2
Q ss_pred HHHHHHHhcCCCCCcHHHHHHHHHhhcCCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcHHHHHH
Q 010357 29 LCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQ 108 (512)
Q Consensus 29 ~~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q 108 (512)
+.+.+.+.+||. | ++|.++++.+++|+++++++|||||||+ |.+|++..+.. .+.+++|++||++|+.|
T Consensus 46 ~~~~~~~~~g~~-p-~iQ~~ai~~il~g~dvlv~apTGSGKTl-~~lp~l~~~~~--------~~~~~lil~PtreLa~Q 114 (1054)
T 1gku_B 46 FVEFFRKCVGEP-R-AIQKMWAKRILRKESFAATAPTGVGKTS-FGLAMSLFLAL--------KGKRCYVIFPTSLLVIQ 114 (1054)
T ss_dssp HHHHHHTTTCSC-C-HHHHHHHHHHHTTCCEECCCCBTSCSHH-HHHHHHHHHHT--------TSCCEEEEESCHHHHHH
T ss_pred HHHHHHHhcCCC-H-HHHHHHHHHHHhCCCEEEEcCCCCCHHH-HHHHHHHHHhh--------cCCeEEEEeccHHHHHH
Confidence 446777788999 9 9999999999999999999999999998 88888877654 35679999999999999
Q ss_pred HHHHHHHHHhhcCCc---ceEEEeCCCchHH---HHHHHcCCCCEEEeCChHHHHHHhhcCCCcCCceeEEEEcchhHHH
Q 010357 109 VYEILHKLLHRFHWI---VPGYVMGGENRSK---EKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRIL 182 (512)
Q Consensus 109 ~~~~~~~~~~~~~~~---~~~~~~~g~~~~~---~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lV~DEah~l~ 182 (512)
+++.+..++...+.. .+..++||..... ....+.. ++|+|+||++|.+++.. ++++++||+||||+++
T Consensus 115 ~~~~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~-~~IlV~TP~~L~~~l~~-----L~~l~~lViDEah~~l 188 (1054)
T 1gku_B 115 AAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN-FKIVITTTQFLSKHYRE-----LGHFDFIFVDDVDAIL 188 (1054)
T ss_dssp HHHHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG-CSEEEEEHHHHHHCSTT-----SCCCSEEEESCHHHHH
T ss_pred HHHHHHHHHhhcCCCccceEEEEeCCCChhhHHHHHhhccC-CCEEEEcHHHHHHHHHH-----hccCCEEEEeChhhhh
Confidence 999999998766531 5677778777655 3444555 99999999999997765 4589999999999999
Q ss_pred hcCchHHHHHHHHHhccCCCCCCCCCCcccccceeEEEEEEecchhhHHHHHhhcCCCeEEccCCCcCCCCccccccCCc
Q 010357 183 ELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLPEDKSHVRFGSL 262 (512)
Q Consensus 183 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (512)
+ ++..+..++..+....... ........+++++|||++.. ..+...++..+..+.+....
T Consensus 189 ~--~~~~~~~i~~~lgf~~~~~----~~~~~~~~q~~l~SAT~t~~-~~~~~~~~~~~~~i~v~~~~------------- 248 (1054)
T 1gku_B 189 K--ASKNVDKLLHLLGFHYDLK----TKSWVGEARGCLMVSTATAK-KGKKAELFRQLLNFDIGSSR------------- 248 (1054)
T ss_dssp T--STHHHHHHHHHTTEEEETT----TTEEEECCSSEEEECCCCSC-CCTTHHHHHHHHCCCCSCCE-------------
T ss_pred h--ccccHHHHHHHhCcchhhh----hhhcccCCceEEEEecCCCc-hhHHHHHhhcceEEEccCcc-------------
Confidence 8 6788888888775311100 01112267889999999876 32222222222111111110
Q ss_pred ccchhhhccCCCccccccccccccccceeeeEEEecCCchHHHHHHHHHhhhccccCceEEEEeecchhhhhHHHhhhhh
Q 010357 263 ESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEF 342 (512)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~ 342 (512)
....++.+.+. ...+...+..++... ++++||||++++.++.+++.|...
T Consensus 249 ----------------------~~~~~i~~~~~---~~~k~~~L~~ll~~~-----~~~~LVF~~t~~~a~~l~~~L~~~ 298 (1054)
T 1gku_B 249 ----------------------ITVRNVEDVAV---NDESISTLSSILEKL-----GTGGIIYARTGEEAEEIYESLKNK 298 (1054)
T ss_dssp ----------------------ECCCCEEEEEE---SCCCTTTTHHHHTTS-----CSCEEEEESSHHHHHHHHHTTTTS
T ss_pred ----------------------cCcCCceEEEe---chhHHHHHHHHHhhc-----CCCEEEEEcCHHHHHHHHHHHhhc
Confidence 01122333333 345556666666542 578999999999999999999763
Q ss_pred cCCCCCCChhHHHhhhhccceeeecCCCCHHHHHHHHHhhhcCCCcEEEe----ecccccCCCCCCC-cEEEEeCCC---
Q 010357 343 QWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLS----TDVAARGLDFPKV-KCIIQYDSA--- 414 (512)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~v~~l~g~~~~~~r~~~~~~f~~~~~~vLva----T~~~~~Gldip~~-~~VI~~~~p--- 414 (512)
+.+..+||++ ..+++.|++|+.+|||| |+++++|+|+|+| ++||+++.|
T Consensus 299 ------------------~~v~~lhg~~-----~~~l~~F~~G~~~VLVaTas~Tdv~~rGIDip~VI~~VI~~~~P~~~ 355 (1054)
T 1gku_B 299 ------------------FRIGIVTATK-----KGDYEKFVEGEIDHLIGTAHYYGTLVRGLDLPERIRFAVFVGCPSFR 355 (1054)
T ss_dssp ------------------SCEEECTTSS-----SHHHHHHHHTSCSEEEEECC------CCSCCTTTCCEEEEESCCEEE
T ss_pred ------------------cCeeEEeccH-----HHHHHHHHcCCCcEEEEecCCCCeeEeccccCCcccEEEEeCCCccc
Confidence 4688899998 47889999999999999 8999999999996 999999999
Q ss_pred --------------------------------------------------------------------CChhHHHHhhhh
Q 010357 415 --------------------------------------------------------------------GEATEYVHRVGR 426 (512)
Q Consensus 415 --------------------------------------------------------------------~s~~~~~Q~~GR 426 (512)
.+..+|+||+||
T Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~yiQr~GR 435 (1054)
T 1gku_B 356 VTIEDIDSLSPQMVKLLAYLYRNVDEIERLLPAVERHIDEVREILKKVMGKERPQAKDVVVREGEVIFPDLRTYIQGSGR 435 (1054)
T ss_dssp EECSCGGGSCHHHHHHHHTTTSCHHHHHTTCTTTSSCHHHHHHHHHHHHTTSCCSCSSSEEETTEEEEECHHHHHHHHHT
T ss_pred ccccccccChHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccceeEeecceecCcHHHHhhhhch
Confidence 789999999999
Q ss_pred cccCCCCc--cEEEecCccchhHHHHHHH
Q 010357 427 TARLGERG--DSLLFLQPVEMDYLQDLEK 453 (512)
Q Consensus 427 agR~g~~g--~~~~~~~~~~~~~~~~l~~ 453 (512)
+||.|..| .+++++..++...++.+.+
T Consensus 436 agR~g~~g~~~g~~~~~~~d~~~~~~l~~ 464 (1054)
T 1gku_B 436 TSRLFAGGLTKGASFLLEDDSELLSAFIE 464 (1054)
T ss_dssp TCCEETTEECCEEEEEECSCHHHHHHHHH
T ss_pred hhhccCCCCceEEEEEEecCHHHHHHHHH
Confidence 99988775 4777777777777666655
No 34
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=100.00 E-value=9.3e-43 Score=375.08 Aligned_cols=387 Identities=16% Similarity=0.199 Sum_probs=214.0
Q ss_pred hcCCCCCcHHHHHHHHHhhcCCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHH
Q 010357 36 RLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHK 115 (512)
Q Consensus 36 ~~~~~~~~~~Q~~~~~~~~~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~ 115 (512)
..|+..||++|.++++.+++|+++++++|||+|||++|++|++..+..... ..+.++||++|+++|+.|+.+.+..
T Consensus 243 l~~~~~~r~~Q~~ai~~il~g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~~----~~~~~vLvl~Pt~~L~~Q~~~~~~~ 318 (936)
T 4a2w_A 243 VYETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPA----GRKAKVVFLATKVPVYEQQKNVFKH 318 (936)
T ss_dssp -----CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHTTTTTCCS----SCCCCEEEECSSHHHHHHHHHHHHH
T ss_pred ccCCCCCCHHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHHHHHHhccc----cCCCeEEEEeCCHHHHHHHHHHHHH
Confidence 346778999999999999999999999999999999999999887765321 2267799999999999999999999
Q ss_pred HHhhcCCcceEEEeCCCchHHHHHHHcCCCCEEEeCChHHHHHHhhcCCCcCCceeEEEEcchhHHHhcCchHHH-HHHH
Q 010357 116 LLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEI-EEIL 194 (512)
Q Consensus 116 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lV~DEah~l~~~~~~~~~-~~i~ 194 (512)
++...+ ..+..+.|+.........+..+++|+|+||++|.+.+.......+.++++||+||||++...+....+ ..++
T Consensus 319 ~~~~~~-~~v~~~~G~~~~~~~~~~~~~~~~IvI~Tp~~L~~~l~~~~~~~l~~~~liViDEaH~~~~~~~~~~i~~~~~ 397 (936)
T 4a2w_A 319 HFERQG-YSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYL 397 (936)
T ss_dssp HHHTTT-CCEEEECCC-----CCHHHHHHCSEEEECHHHHHHHHHSSSCCCGGGCSEEEEETGGGCSTTCHHHHHHHHHH
T ss_pred HhcccC-ceEEEEECCcchhhHHHHhccCCCEEEecHHHHHHHHHcCccccccCCCEEEEECccccCCCccHHHHHHHHH
Confidence 987554 55666777765555445555678999999999999887644436778999999999998776432222 2222
Q ss_pred HHhccCCCCCCCCCCcccccceeEEEEEEecchh--------hHHHHH--hhcCCCeEEccCCC------cCCC-Ccccc
Q 010357 195 DILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEK--------VNHLAK--ISLETPVLIGLDEK------KLPE-DKSHV 257 (512)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~--------~~~~~~--~~~~~~~~~~~~~~------~~~~-~~~~~ 257 (512)
..... ......+++++|||+... ...+.. ..+....+...... .... .....
T Consensus 398 ~~~~~-----------~~~~~~~~l~LSATp~~~~~~~l~~~~~~i~~L~~~L~~~~i~~~~~~~~~l~~~~~~p~~~~~ 466 (936)
T 4a2w_A 398 EQKFN-----------SASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVR 466 (936)
T ss_dssp HHHHT-----------TCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHSCCCCEEEE
T ss_pred HHhhc-----------cCCCcCeEEEecCCcccccchhHHHHHHHHHHHHHhcCCceeecccccHHHHHHhccCCcceEE
Confidence 22110 011268999999999521 111111 11222222111110 0000 00000
Q ss_pred ccCC-cccc-------h----hhhcc----------CCCccccc-----cc-------cccccccc--------------
Q 010357 258 RFGS-LESD-------V----KEEVE----------HPSTTMRS-----TT-------EDFKLPAQ-------------- 289 (512)
Q Consensus 258 ~~~~-~~~~-------~----~~~~~----------~~~~~~~~-----~~-------~~~~~~~~-------------- 289 (512)
.... .... . ..... ........ .. .....+..
T Consensus 467 ~~~~~~~~~~~~~l~~l~~~i~~~~~~~l~~~~l~~~~~~~~g~~~y~~~l~~l~k~~~~~~l~~~~~~~~~~~~l~~~~ 546 (936)
T 4a2w_A 467 LVKRRIHNPFAAIISNLMSETEALMRTIAYVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICT 546 (936)
T ss_dssp ECCCCSCCHHHHHHHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHH
T ss_pred ecccccCcHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccchHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHH
Confidence 0000 0000 0 00000 00000000 00 00000000
Q ss_pred ------------------------eeee------------------------------E-EEecCCchHHHHHHHHHhhh
Q 010357 290 ------------------------LVQR------------------------------Y-VKVPCGSRLAVLLSILKHLF 314 (512)
Q Consensus 290 ------------------------~~~~------------------------------~-~~~~~~~k~~~l~~~l~~~~ 314 (512)
+... . .....+.|...+.+++...+
T Consensus 547 ~~l~~~~~al~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~ 626 (936)
T 4a2w_A 547 EHLRKYNDALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAY 626 (936)
T ss_dssp HHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHh
Confidence 0000 0 00013567888888888776
Q ss_pred ccccCceEEEEeecchhhhhHHHhhhhhcCCCCCCChhHHHhhhhccceeeecCCCCHHHHHHHHHhhhc-CCCcEEEee
Q 010357 315 DTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKT-EKKALLLST 393 (512)
Q Consensus 315 ~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~l~g~~~~~~r~~~~~~f~~-~~~~vLvaT 393 (512)
....+.++||||+++..++.+++.|.....-..-. ...+.|.....+||+|+..+|..+++.|++ |+.+|||||
T Consensus 627 ~~~~~~rvLIF~~t~~~ae~L~~~L~~~~~l~~ik-----~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~~g~~~VLVaT 701 (936)
T 4a2w_A 627 RYNPQTRTLLFAKTRALVSALKKCMEENPILNYIK-----PGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIAT 701 (936)
T ss_dssp TSCTTCCEEEEESSHHHHHHHHHHHHHCSTTSSCC-----CEEC----------------------------CCSEEEEE
T ss_pred ccCCCCeEEEEeCCHHHHHHHHHHHhhCccccccc-----eeEEecCCCcccCCCCCHHHHHHHHHHhhccCCeeEEEEe
Confidence 55677999999999999999999998741000000 001125556677999999999999999999 999999999
Q ss_pred cccccCCCCCCCcEEEEeCCCCChhHHHHhhhhcccCCCCccEEEecCccch
Q 010357 394 DVAARGLDFPKVKCIIQYDSAGEATEYVHRVGRTARLGERGDSLLFLQPVEM 445 (512)
Q Consensus 394 ~~~~~Gldip~~~~VI~~~~p~s~~~~~Q~~GRagR~g~~g~~~~~~~~~~~ 445 (512)
+++++|||+|++++||+||+|+|+..|+||+|| ||. +.|.++++++..+.
T Consensus 702 ~~~~eGIDlp~v~~VI~yD~p~s~~~~iQr~GR-GR~-~~g~vi~Li~~~t~ 751 (936)
T 4a2w_A 702 SVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEV 751 (936)
T ss_dssp CC------CCCCSEEEEESCCSCSHHHHCC---------CCCEEEEESCHHH
T ss_pred CchhcCCcchhCCEEEEeCCCCCHHHHHHhcCC-CCC-CCCEEEEEEeCCCH
Confidence 999999999999999999999999999999999 999 78999999987653
No 35
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=1.1e-42 Score=389.48 Aligned_cols=373 Identities=21% Similarity=0.275 Sum_probs=262.7
Q ss_pred CCCCCcHHHHHHHHHhh-cCCCEEEEccCCChHhHHHHHHHHHHHhhcCC--CCCCCCCceEEEEcCcHHHHHHHHHHHH
Q 010357 38 GFEAPTKVQAQAIPVIL-SGRHVLVNAATGTGKTVAYLAPIINHLQSYSP--RIDRSSGTFALVLVPTRELCLQVYEILH 114 (512)
Q Consensus 38 ~~~~~~~~Q~~~~~~~~-~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~--~~~~~~~~~~lil~Pt~~L~~q~~~~~~ 114 (512)
||++++++|.++++.++ +++|++++||||||||++|.++++..+.+... ......+.+++|++|+++|+.|..+.+.
T Consensus 76 g~~~ln~iQs~~~~~al~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~lyiaP~kALa~e~~~~l~ 155 (1724)
T 4f92_B 76 GFKTLNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGSFG 155 (1724)
T ss_dssp TCSBCCHHHHHTHHHHHTCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEEECSSHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEEeCCcchHHHHHHHHHHHHHHhhccccccccCCCCEEEEECCHHHHHHHHHHHHH
Confidence 79999999999999877 57899999999999999999999999876432 1223457889999999999999999999
Q ss_pred HHHhhcCCcceEEEeCCCchHHHHHHHcCCCCEEEeCChHHHHHHhhcCC-CcCCceeEEEEcchhHHHhcCchHHHHHH
Q 010357 115 KLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSS-FLHTNLRWIIFDEADRILELGFGKEIEEI 193 (512)
Q Consensus 115 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~-~~~~~~~~lV~DEah~l~~~~~~~~~~~i 193 (512)
+.+...+ ..++.++|+...... ....++|+|+|||++..++.+... ..++.+++||+||+|.+.+ .++..++.+
T Consensus 156 ~~~~~~g-i~V~~~tGd~~~~~~---~~~~~~IlVtTpEkld~llr~~~~~~~l~~v~~vIiDEvH~l~d-~RG~~lE~~ 230 (1724)
T 4f92_B 156 KRLATYG-ITVAELTGDHQLCKE---EISATQIIVCTPEKWDIITRKGGERTYTQLVRLIILDEIHLLHD-DRGPVLEAL 230 (1724)
T ss_dssp HHHTTTT-CCEEECCSSCSSCCT---TGGGCSEEEECHHHHHHHTTSSTTHHHHTTEEEEEETTGGGGGS-TTHHHHHHH
T ss_pred HHHhhCC-CEEEEEECCCCCCcc---ccCCCCEEEECHHHHHHHHcCCccchhhcCcCEEEEecchhcCC-ccHHHHHHH
Confidence 8887766 455666666543221 234589999999998666554221 2357899999999997655 688888887
Q ss_pred HHHhccCCCCCCCCCCcccccceeEEEEEEecchhhHHHHHhhcCCCe--EEccCCCcCCCCccccccCCcccchhhhcc
Q 010357 194 LDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPV--LIGLDEKKLPEDKSHVRFGSLESDVKEEVE 271 (512)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (512)
+.++.... ...+...|+|++|||+++ .+.+..+....+. ...+.....
T Consensus 231 l~rl~~~~--------~~~~~~~riI~LSATl~N-~~dvA~wL~~~~~~~~~~~~~~~R--------------------- 280 (1724)
T 4f92_B 231 VARAIRNI--------EMTQEDVRLIGLSATLPN-YEDVATFLRVDPAKGLFYFDNSFR--------------------- 280 (1724)
T ss_dssp HHHHHHHH--------HHHTCCCEEEEEECSCTT-HHHHHHHTTCCHHHHEEECCGGGC---------------------
T ss_pred HHHHHHHH--------HhCCCCCcEEEEecccCC-HHHHHHHhCCCCCCCeEEECCCCc---------------------
Confidence 76543210 011127899999999986 4445554332211 111111110
Q ss_pred CCCccccccccccccccceeeeEEEecCCch---HHHHHHHHHhh-hccccCceEEEEeecchhhhhHHHhhhhhcCCCC
Q 010357 272 HPSTTMRSTTEDFKLPAQLVQRYVKVPCGSR---LAVLLSILKHL-FDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPH 347 (512)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k---~~~l~~~l~~~-~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~ 347 (512)
|..+.+.+........ ...+...+... .+...++++||||++++.|+.+++.|.+......
T Consensus 281 ---------------PvpL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~LVF~~sR~~~~~~A~~l~~~~~~~~ 345 (1724)
T 4f92_B 281 ---------------PVPLEQTYVGITEKKAIKRFQIMNEIVYEKIMEHAGKNQVLVFVHSRKETGKTARAIRDMCLEKD 345 (1724)
T ss_dssp ---------------SSCEEEECCEECCCCHHHHHHHHHHHHHHHHTTCCSSCCEEEECSSTTTTHHHHHHHHHHHHHTT
T ss_pred ---------------cCccEEEEeccCCcchhhhhHHHHHHHHHHHHHHhcCCcEEEECCCHHHHHHHHHHHHHHHhhcc
Confidence 1122222222222211 12222222222 2234467999999999999999998865421110
Q ss_pred ---------------------CCChhHHHhhhhccceeeecCCCCHHHHHHHHHhhhcCCCcEEEeecccccCCCCCCCc
Q 010357 348 ---------------------SQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVK 406 (512)
Q Consensus 348 ---------------------~~~~~~~~~~~~~~~v~~l~g~~~~~~r~~~~~~f~~~~~~vLvaT~~~~~Gldip~~~ 406 (512)
......+.. ....++.+|||+|+..+|..+++.|++|.++|||||+++++|||+|+.+
T Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~l~~Gva~HHagL~~~~R~~vE~~F~~G~i~vlvaTsTLa~GVNlPa~~ 424 (1724)
T 4f92_B 346 TLGLFLREGSASTEVLRTEAEQCKNLELKD-LLPYGFAIHHAGMTRVDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHT 424 (1724)
T ss_dssp STTCCSSCCTTCSSHHHHTTSCCSTHHHHH-HTTTTEEEECSSSCTHHHHHHHHHHHTTCCCEEEECHHHHHHSCCCBSE
T ss_pred chhhhcccchhHHHHHHhhhcccccHHHHH-HhhcCEEEEcCCCCHHHHHHHHHHHHCCCCeEEEEcchhHhhCCCCCce
Confidence 001122222 3367899999999999999999999999999999999999999999999
Q ss_pred EEEE----eC------CCCChhHHHHhhhhcccCCC--CccEEEecCccchhHHHHHHHcCCCCCcc
Q 010357 407 CIIQ----YD------SAGEATEYVHRVGRTARLGE--RGDSLLFLQPVEMDYLQDLEKHGVSLTEY 461 (512)
Q Consensus 407 ~VI~----~~------~p~s~~~~~Q~~GRagR~g~--~g~~~~~~~~~~~~~~~~l~~~~~~~~~~ 461 (512)
+||. |+ .|.++.+|.||+|||||.|. .|.++++++.++...+..+.....+++..
T Consensus 425 vVI~~~~~~~~~~~~~~~ls~~~~~Qm~GRAGR~g~d~~G~~ii~~~~~~~~~~~~ll~~~~pieS~ 491 (1724)
T 4f92_B 425 VIIKGTQVYSPEKGRWTELGALDILQMLGRAGRPQYDTKGEGILITSHGELQYYLSLLNQQLPIESQ 491 (1724)
T ss_dssp EEEECCEEEETTTTEEEECCHHHHHHHHTTBSCTTTCSCEEEEEEEESTTCCHHHHHTTTCSCCCCC
T ss_pred EEEeCCEEecCcCCCcccCCHHHHHHhhhhccCCCCCCccEEEEEecchhHHHHHHHHcCCCcchhh
Confidence 9985 33 35689999999999999874 68999999998888777777665555543
No 36
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=100.00 E-value=1.8e-42 Score=372.13 Aligned_cols=383 Identities=18% Similarity=0.196 Sum_probs=257.9
Q ss_pred HHHHHHHhcCCCCCcHHHHHHHHHhhcCCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcHHHHHH
Q 010357 29 LCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQ 108 (512)
Q Consensus 29 ~~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q 108 (512)
+...+...++|. |+++|.++++.+++|+++++++|||||||++|++++...+.. +.+++|++|+++|+.|
T Consensus 28 l~~~~~~~~~f~-l~~~Q~~aI~~il~g~~vlv~apTGsGKTlv~~~~i~~~~~~---------g~~vlvl~PtraLa~Q 97 (997)
T 4a4z_A 28 LIPNPARSWPFE-LDTFQKEAVYHLEQGDSVFVAAHTSAGKTVVAEYAIAMAHRN---------MTKTIYTSPIKALSNQ 97 (997)
T ss_dssp HCSSCSCCCSSC-CCHHHHHHHHHHHTTCEEEEECCTTSCSHHHHHHHHHHHHHT---------TCEEEEEESCGGGHHH
T ss_pred hhHhHHHhCCCC-CCHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHHHHHhc---------CCeEEEEeCCHHHHHH
Confidence 333444567887 999999999999999999999999999999999999887654 7789999999999999
Q ss_pred HHHHHHHHHhhcCCcceEEEeCCCchHHHHHHHcCCCCEEEeCChHHHHHHhhcCCCcCCceeEEEEcchhHHHhcCchH
Q 010357 109 VYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGK 188 (512)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lV~DEah~l~~~~~~~ 188 (512)
+++.+...+. ...++.+.|+... ....+|+|+||++|.+.+.. ....+.++++|||||||++.+++++.
T Consensus 98 ~~~~l~~~~~---~~~v~~l~G~~~~-------~~~~~IlV~Tpe~L~~~l~~-~~~~l~~l~lvViDEaH~l~d~~~g~ 166 (997)
T 4a4z_A 98 KFRDFKETFD---DVNIGLITGDVQI-------NPDANCLIMTTEILRSMLYR-GADLIRDVEFVIFDEVHYVNDQDRGV 166 (997)
T ss_dssp HHHHHHTTC-----CCEEEECSSCEE-------CTTSSEEEEEHHHHHHHHHH-TCSGGGGEEEEEECCTTCCCTTCTTC
T ss_pred HHHHHHHHcC---CCeEEEEeCCCcc-------CCCCCEEEECHHHHHHHHHh-CchhhcCCCEEEEECcccccccchHH
Confidence 9999988643 3456667666542 34579999999999998876 44456789999999999999999999
Q ss_pred HHHHHHHHhccCCCCCCCCCCcccccceeEEEEEEecchhhHHHHHhhc----CCCeEEccCCCcCCCCccccccCCccc
Q 010357 189 EIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISL----ETPVLIGLDEKKLPEDKSHVRFGSLES 264 (512)
Q Consensus 189 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (512)
.+..++..++. ..+++++|||+++..+ +..+.. .....+.......+.............
T Consensus 167 ~~e~ii~~l~~---------------~v~iIlLSAT~~n~~e-f~~~l~~~~~~~~~vi~~~~r~~pl~~~v~~~~~~~~ 230 (997)
T 4a4z_A 167 VWEEVIIMLPQ---------------HVKFILLSATVPNTYE-FANWIGRTKQKNIYVISTPKRPVPLEINIWAKKELIP 230 (997)
T ss_dssp CHHHHHHHSCT---------------TCEEEEEECCCTTHHH-HHHHHHHHHTCCEEEEECSSCSSCEEEEEEETTEEEE
T ss_pred HHHHHHHhccc---------------CCCEEEEcCCCCChHH-HHHHHhcccCCceEEEecCCCCccceEEEecCCcchh
Confidence 99999988876 8899999999987653 333322 222233333332222111110000000
Q ss_pred chhhh--------------cc-CCCccc--------ccc-----------cc--------------------c-cccccc
Q 010357 265 DVKEE--------------VE-HPSTTM--------RST-----------TE--------------------D-FKLPAQ 289 (512)
Q Consensus 265 ~~~~~--------------~~-~~~~~~--------~~~-----------~~--------------------~-~~~~~~ 289 (512)
..... .. ...... ... .. . ......
T Consensus 231 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 310 (997)
T 4a4z_A 231 VINQNSEFLEANFRKHKEILNGESAKGAPSKTDNGRGGSTARGGRGGSNTRDGRGGRGNSTRGGANRGGSRGAGAIGSNK 310 (997)
T ss_dssp EECTTCCBCHHHHHHHHHHHC-----------------------------------------------------------
T ss_pred cccchhhhhHHHHHHHHHHhhccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 00000 00 000000 000 00 0 000000
Q ss_pred eeeeEEEecCCchHHHHHHHHHhhhccccCceEEEEeecchhhhhHHHhhhhhcCCCCCC---------------C--hh
Q 010357 290 LVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQ---------------P--DM 352 (512)
Q Consensus 290 ~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~---------------~--~~ 352 (512)
............+...+...+.. ....++||||++++.++.++..|.......... . +.
T Consensus 311 ~~~~~~~~~~~~~~~~li~~l~~----~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~ 386 (997)
T 4a4z_A 311 RKFFTQDGPSKKTWPEIVNYLRK----RELLPMVVFVFSKKRCEEYADWLEGINFCNNKEKSQIHMFIEKSITRLKKEDR 386 (997)
T ss_dssp ------CCCCTTHHHHHHHHHHH----TTCCSEEEECSCHHHHHHHHHTTTTCCCCCHHHHHHHHHHHHHHHTTSCHHHH
T ss_pred cccccccccchhHHHHHHHHHHh----CCCCCEEEEECCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcchhhh
Confidence 00111112334455566666654 346799999999999999999997653321100 0 00
Q ss_pred -----HHHhhhhccceeeecCCCCHHHHHHHHHhhhcCCCcEEEeecccccCCCCCCCcEEEEeCCCC---------Chh
Q 010357 353 -----ELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAG---------EAT 418 (512)
Q Consensus 353 -----~~~~~~~~~~v~~l~g~~~~~~r~~~~~~f~~~~~~vLvaT~~~~~Gldip~~~~VI~~~~p~---------s~~ 418 (512)
..-...+..++..+||+|++.+|..+++.|++|..+|||||+++++|+|+|++. ||+++.+. |+.
T Consensus 387 ~l~~~~~l~~~l~~gi~~~H~gl~~~~R~~v~~~F~~G~~kVLvAT~~~a~GIDiP~~~-VVi~~~~k~dg~~~~~~s~~ 465 (997)
T 4a4z_A 387 DLPQILKTRSLLERGIAVHHGGLLPIVKELIEILFSKGFIKVLFATETFAMGLNLPTRT-VIFSSIRKHDGNGLRELTPG 465 (997)
T ss_dssp TCHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCCSE-EEESCSEEEETTEEEECCHH
T ss_pred cchhHHHHHHHhhcCeeeecCCCCHHHHHHHHHHHHCCCCcEEEEchHhhCCCCCCCce-EEEeccccccCccCCCCCHH
Confidence 000113356789999999999999999999999999999999999999999954 55544444 999
Q ss_pred HHHHhhhhcccCC--CCccEEEecC--ccchhHHHHHHH
Q 010357 419 EYVHRVGRTARLG--ERGDSLLFLQ--PVEMDYLQDLEK 453 (512)
Q Consensus 419 ~~~Q~~GRagR~g--~~g~~~~~~~--~~~~~~~~~l~~ 453 (512)
+|+||+|||||.| ..|.|++++. +.+...++.+..
T Consensus 466 ~y~Qr~GRAGR~G~~~~G~vi~l~~~~~~~~~~~~~~i~ 504 (997)
T 4a4z_A 466 EFTQMAGRAGRRGLDSTGTVIVMAYNSPLSIATFKEVTM 504 (997)
T ss_dssp HHHHHHGGGCCTTTCSSEEEEEECCSSCCCHHHHHHHHH
T ss_pred HHhHHhcccccCCCCcceEEEEecCCCcchHHHHHHHhc
Confidence 9999999999998 4577888873 345566666644
No 37
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=100.00 E-value=2.7e-41 Score=368.42 Aligned_cols=328 Identities=20% Similarity=0.243 Sum_probs=250.0
Q ss_pred cCCCCHHHHHHHHHhcCCCCCcHHHHHHHHHhhc----CC--CEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCce
Q 010357 22 SLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILS----GR--HVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTF 95 (512)
Q Consensus 22 ~~~l~~~~~~~l~~~~~~~~~~~~Q~~~~~~~~~----~~--~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (512)
.++.+....+.+.+.+||. +|++|.++++.+++ ++ ++++++|||+|||++++.+++..+.. +.+
T Consensus 585 ~~~~~~~~~~~~~~~f~~~-~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~~~---------g~~ 654 (1151)
T 2eyq_A 585 AFKHDREQYQLFCDSFPFE-TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDN---------HKQ 654 (1151)
T ss_dssp CCCCCHHHHHHHHHTCCSC-CCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHTT---------TCE
T ss_pred CCCCCHHHHHHHHHhCCCC-CCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHHHh---------CCe
Confidence 3567778888888889997 89999999999886 65 89999999999999999998877654 678
Q ss_pred EEEEcCcHHHHHHHHHHHHHHHhhcCCcceEEEeCCCchHHH---HHHHcC-CCCEEEeCChHHHHHHhhcCCCcCCcee
Q 010357 96 ALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKE---KARLRK-GISILVATPGRLLDHLKHTSSFLHTNLR 171 (512)
Q Consensus 96 ~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~g~~~~~~---~~~~~~-~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~ 171 (512)
++|++||++|+.|+++.+...+..++ ..+..+.+....... ...+.. .++|+|+||+.+. ....+.+++
T Consensus 655 vlvlvPt~~La~Q~~~~~~~~~~~~~-i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~------~~~~~~~l~ 727 (1151)
T 2eyq_A 655 VAVLVPTTLLAQQHYDNFRDRFANWP-VRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQ------SDVKFKDLG 727 (1151)
T ss_dssp EEEECSSHHHHHHHHHHHHHHSTTTT-CCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHH------SCCCCSSEE
T ss_pred EEEEechHHHHHHHHHHHHHHhhcCC-CeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHh------CCccccccc
Confidence 99999999999999999998876544 344555554443332 333444 4899999998663 234567899
Q ss_pred EEEEcchhHHHhcCchHHHHHHHHHhccCCCCCCCCCCcccccceeEEEEEEecchhhHHHHHhhcCCCeEEccCCCcCC
Q 010357 172 WIIFDEADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLP 251 (512)
Q Consensus 172 ~lV~DEah~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (512)
+||+||+|+ ++......+..++. ..+++++|||+.+.........+.+...+...+..
T Consensus 728 lvIiDEaH~-----~g~~~~~~l~~l~~---------------~~~vl~lSATp~p~~l~~~~~~~~~~~~i~~~~~~-- 785 (1151)
T 2eyq_A 728 LLIVDEEHR-----FGVRHKERIKAMRA---------------NVDILTLTATPIPRTLNMAMSGMRDLSIIATPPAR-- 785 (1151)
T ss_dssp EEEEESGGG-----SCHHHHHHHHHHHT---------------TSEEEEEESSCCCHHHHHHHTTTSEEEECCCCCCB--
T ss_pred eEEEechHh-----cChHHHHHHHHhcC---------------CCCEEEEcCCCChhhHHHHHhcCCCceEEecCCCC--
Confidence 999999999 55666667776655 78999999998776655554444333322111100
Q ss_pred CCccccccCCcccchhhhccCCCccccccccccccccceeeeEEEecCCchHHHHHHHHHhhhccccCceEEEEeecchh
Q 010357 252 EDKSHVRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDA 331 (512)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~lvf~~~~~~ 331 (512)
...+...+.. ..+......++..+ ..+++++|||++++.
T Consensus 786 -----------------------------------r~~i~~~~~~---~~~~~i~~~il~~l---~~g~qvlvf~~~v~~ 824 (1151)
T 2eyq_A 786 -----------------------------------RLAVKTFVRE---YDSMVVREAILREI---LRGGQVYYLYNDVEN 824 (1151)
T ss_dssp -----------------------------------CBCEEEEEEE---CCHHHHHHHHHHHH---TTTCEEEEECCCSSC
T ss_pred -----------------------------------ccccEEEEec---CCHHHHHHHHHHHH---hcCCeEEEEECCHHH
Confidence 0011111111 12222222333332 346899999999999
Q ss_pred hhhHHHhhhhhcCCCCCCChhHHHhhhhccceeeecCCCCHHHHHHHHHhhhcCCCcEEEeecccccCCCCCCCcEEEEe
Q 010357 332 VDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQY 411 (512)
Q Consensus 332 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~l~g~~~~~~r~~~~~~f~~~~~~vLvaT~~~~~Gldip~~~~VI~~ 411 (512)
++.+++.|.+. +++.++..+||+|+..+|+.+++.|++|+.+|||||+++++|+|+|++++||++
T Consensus 825 ~~~l~~~L~~~---------------~p~~~v~~lhg~~~~~eR~~il~~F~~g~~~VLVaT~v~e~GiDip~v~~VIi~ 889 (1151)
T 2eyq_A 825 IQKAAERLAEL---------------VPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIE 889 (1151)
T ss_dssp HHHHHHHHHHH---------------CTTSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEESSTTGGGSCCTTEEEEEET
T ss_pred HHHHHHHHHHh---------------CCCCeEEEEeCCCCHHHHHHHHHHHHcCCCcEEEECCcceeeecccCCcEEEEe
Confidence 99999999876 337789999999999999999999999999999999999999999999999999
Q ss_pred CC-CCChhHHHHhhhhcccCCCCccEEEecCccc
Q 010357 412 DS-AGEATEYVHRVGRTARLGERGDSLLFLQPVE 444 (512)
Q Consensus 412 ~~-p~s~~~~~Q~~GRagR~g~~g~~~~~~~~~~ 444 (512)
+. +.+..+|.||+||+||.|+.|.|++++.+.+
T Consensus 890 ~~~~~~l~~l~Qr~GRvgR~g~~g~~~ll~~~~~ 923 (1151)
T 2eyq_A 890 RADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPK 923 (1151)
T ss_dssp TTTSSCHHHHHHHHTTCCBTTBCEEEEEEECCGG
T ss_pred CCCCCCHHHHHHHHhccCcCCCceEEEEEECCcc
Confidence 88 5689999999999999999999999987643
No 38
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=100.00 E-value=4.5e-43 Score=371.38 Aligned_cols=384 Identities=19% Similarity=0.225 Sum_probs=228.8
Q ss_pred CCCCCcHHHHHHHHHhhcCCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcHHHHHHH-HHHHHHH
Q 010357 38 GFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQV-YEILHKL 116 (512)
Q Consensus 38 ~~~~~~~~Q~~~~~~~~~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~-~~~~~~~ 116 (512)
++. |+++|.++++.+++|+++++++|||+|||++|++|+++.+..... .+.+.++||++|+++|+.|+ .+.+..+
T Consensus 5 ~~~-l~~~Q~~~i~~il~g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~---~~~~~~vlvl~P~~~L~~Q~~~~~l~~~ 80 (699)
T 4gl2_A 5 MLQ-LRPYQMEVAQPALEGKNIIICLPTGCGKTRVAVYIAKDHLDKKKK---ASEPGKVIVLVNKVLLVEQLFRKEFQPF 80 (699)
T ss_dssp --C-CCHHHHHHHHHHHSSCCEEECCCTTSCHHHHHHHHHHHHHHHHHH---HTCCCCBCCEESCSHHHHHHHHHTHHHH
T ss_pred CCC-ccHHHHHHHHHHHhCCCEEEEcCCCCcHHHHHHHHHHHHHHhccc---cCCCCeEEEEECCHHHHHHHHHHHHHHH
Confidence 454 999999999999999999999999999999999999988766321 01236799999999999999 9999998
Q ss_pred HhhcCCcceEEEeCCCchHHHHHHHcCCCCEEEeCChHHHHHHhh-----cCCCcCCceeEEEEcchhHHHhcCch-HHH
Q 010357 117 LHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKH-----TSSFLHTNLRWIIFDEADRILELGFG-KEI 190 (512)
Q Consensus 117 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~-----~~~~~~~~~~~lV~DEah~l~~~~~~-~~~ 190 (512)
+.. ...+..+.|+.........+....+|+|+||++|.+.+.. ...+.+..+++|||||||++...... ..+
T Consensus 81 ~~~--~~~v~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~~~~lvViDEaH~~~~~~~~~~i~ 158 (699)
T 4gl2_A 81 LKK--WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIM 158 (699)
T ss_dssp HTT--TSCEEEEC----CCCCHHHHHHSCSEEEEEHHHHHHHTC--------CCCGGGCSEEEEESGGGCBTTBSSCSHH
T ss_pred cCc--CceEEEEeCCcchhhHHHhhhcCCCEEEECHHHHHHHHhccccccccceecccCcEEEEECccccCccchHHHHH
Confidence 764 2566667777665554555557789999999999988742 23456678999999999998554322 222
Q ss_pred HHHHHHh-ccCCCCCCCCCCcccccceeEEEEEEecchh--------hHHHHHh--hcCCCeEEccCCC--c----CCCC
Q 010357 191 EEILDIL-GSRNIGSIGEGNEVSNVKRQNLLLSATLNEK--------VNHLAKI--SLETPVLIGLDEK--K----LPED 253 (512)
Q Consensus 191 ~~i~~~~-~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~--------~~~~~~~--~~~~~~~~~~~~~--~----~~~~ 253 (512)
...+... ...... .......+.++++++|||+... ...+... .+....+...... . ....
T Consensus 159 ~~~l~~~~~~~~~~---~~~~~~~~~~~il~lTATp~~~~~~~~~~~~~~i~~l~~~l~~~~i~~~~~~~~~l~~~~~~p 235 (699)
T 4gl2_A 159 RHYLMQKLKNNRLK---KENKPVIPLPQILGLTASPGVGGATKQAKAEEHILKLCANLDAFTIKTVKENLDQLKNQIQEP 235 (699)
T ss_dssp HHHHHHHHHHHHHH---C----CCCCCEEEEECSCCCCCSCCSHHHHHHHHHHHHHHHTCSCCCCCCTTHHHHHHHSCCC
T ss_pred HHHHHhhhcccccc---cccccCCCCCEEEEecccccccccccHHHHHHHHHHHHhhcCCCEEEeecCchHHHhhhcCCC
Confidence 2222221 000000 0000011267999999999862 1222211 1111011000000 0 0000
Q ss_pred ccccccCC-------------cccchhhhccC-CCcccccc---------------------------------------
Q 010357 254 KSHVRFGS-------------LESDVKEEVEH-PSTTMRST--------------------------------------- 280 (512)
Q Consensus 254 ~~~~~~~~-------------~~~~~~~~~~~-~~~~~~~~--------------------------------------- 280 (512)
...+.... +.......... +.......
T Consensus 236 ~~~~~~~~~~~~~~~~~~l~~l~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 315 (699)
T 4gl2_A 236 CKKFAIADATREDPFKEKLLEIMTRIQTYCQMSPMSDFGTQPYEQWAIQMEKKAAKEGNRKERVCAEHLRKYNEALQIND 315 (699)
T ss_dssp EEEEEEEC-----CHHHHHHHHHHHHHHHHTCCCCSCSSSHHHHHHHHHHHHHHHHHTCTTTHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEcccccCChHHHHHHHHHHHHHHHhccCcchhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 00000000 00000000000 00000000
Q ss_pred --------------------------ccccccccce------------------eeeEEE-ecCCchHHHHHHHHHhhhc
Q 010357 281 --------------------------TEDFKLPAQL------------------VQRYVK-VPCGSRLAVLLSILKHLFD 315 (512)
Q Consensus 281 --------------------------~~~~~~~~~~------------------~~~~~~-~~~~~k~~~l~~~l~~~~~ 315 (512)
......+..+ ...... .....|...+.+++...+.
T Consensus 316 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~~L~~~~~ 395 (699)
T 4gl2_A 316 TIRMIDAYTHLETFYNEEKDKKFAVIEDDLKKPLKLDETDRFLMTLFFENNKMLKRLAENPEYENEKLTKLRNTIMEQYT 395 (699)
T ss_dssp HSCHHHHHHHHHHHHHHHHHHHC------------CCHHHHHHHHHHHHHHHHHHHHHTCCC----CSSCSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhccccccccccccccchhHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHh
Confidence 0000000000 000000 0023455556666666554
Q ss_pred ccc-CceEEEEeecchhhhhHHHhhhhhcCCCCCCChhHHHhhhhccceeeecCC--------CCHHHHHHHHHhhhcCC
Q 010357 316 TEV-SQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGN--------MKQEDRRTTFGAFKTEK 386 (512)
Q Consensus 316 ~~~-~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~l~g~--------~~~~~r~~~~~~f~~~~ 386 (512)
..+ +.++||||++++.++.+++.|.+...-. ..++.+..+||+ |+..+|..+++.|++|+
T Consensus 396 ~~~~~~~~IVF~~s~~~~~~l~~~L~~~~~l~-----------~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~ 464 (699)
T 4gl2_A 396 RTEESARGIIFTKTRQSAYALSQWITENEKFA-----------EVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGK 464 (699)
T ss_dssp HSSSCCCEEEECSCHHHHHHHHHHHHSSCSCC----------------CEECCCSCCCTTCCCCCHHHHHHHHHHHCC--
T ss_pred cCCCCCcEEEEECcHHHHHHHHHHHHhCcccc-----------ccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCC
Confidence 444 7899999999999999999998641000 116788999999 99999999999999999
Q ss_pred CcEEEeecccccCCCCCCCcEEEEeCCCCChhHHHHhhhhcccCCCCccEEEecCcc
Q 010357 387 KALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRVGRTARLGERGDSLLFLQPV 443 (512)
Q Consensus 387 ~~vLvaT~~~~~Gldip~~~~VI~~~~p~s~~~~~Q~~GRagR~g~~g~~~~~~~~~ 443 (512)
.+|||||+++++|||+|++++||+||+|+|+..|+||+|||||.| +.++++...+
T Consensus 465 ~~VLVaT~~~~~GIDip~v~~VI~~d~p~s~~~~~Qr~GRArr~g--~~~~l~~~~~ 519 (699)
T 4gl2_A 465 INLLIATTVAEEGLDIKECNIVIRYGLVTNEIAMVQARGRARADE--STYVLVAHSG 519 (699)
T ss_dssp -CCSEEECSCCTTSCCCSCCCCEEESCCCCHHHHHHHHTTSCSSS--CEEEEEEESS
T ss_pred CcEEEEccccccCCccccCCEEEEeCCCCCHHHHHHHcCCCCCCC--ceEEEEEeCC
Confidence 999999999999999999999999999999999999999986654 3344443333
No 39
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=100.00 E-value=1.1e-40 Score=338.70 Aligned_cols=372 Identities=17% Similarity=0.160 Sum_probs=229.2
Q ss_pred hcCCCCCcHHHHHHHHHhhcCCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHH
Q 010357 36 RLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHK 115 (512)
Q Consensus 36 ~~~~~~~~~~Q~~~~~~~~~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~ 115 (512)
.+|. +|+++|..+++.+++|+ +..++||+|||++|++|++..... +..++|++||++||.|.++++..
T Consensus 70 ~lg~-~p~~VQ~~~i~~ll~G~--Iaem~TGsGKTlaf~LP~l~~~l~---------g~~vlVltPTreLA~Q~~e~~~~ 137 (853)
T 2fsf_A 70 VFGM-RHFDVQLLGGMVLNERC--IAEMRTGEGKTLTATLPAYLNALT---------GKGVHVVTVNDYLAQRDAENNRP 137 (853)
T ss_dssp HHSC-CCCHHHHHHHHHHHSSE--EEECCTTSCHHHHHHHHHHHHHTT---------SSCCEEEESSHHHHHHHHHHHHH
T ss_pred HcCC-CCChHHHhhcccccCCe--eeeecCCchHHHHHHHHHHHHHHc---------CCcEEEEcCCHHHHHHHHHHHHH
Confidence 3576 59999999999999997 999999999999999999865433 56799999999999999999999
Q ss_pred HHhhcCCcceEEEeCCCchHHHHHHHcCCCCEEEeCChHH-HHHHhhcC-----CCcCCceeEEEEcchhHHH-hcC---
Q 010357 116 LLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRL-LDHLKHTS-----SFLHTNLRWIIFDEADRIL-ELG--- 185 (512)
Q Consensus 116 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~Iiv~Tp~~l-~~~l~~~~-----~~~~~~~~~lV~DEah~l~-~~~--- 185 (512)
++..++ +.++.++||.+.. ......+++|+|+||++| ++++...- ...++++.++|+||||+++ +.+
T Consensus 138 l~~~lg-l~v~~i~GG~~~~--~r~~~~~~dIvvgTpgrl~fDyLrd~~~~~~~~~~~~~l~~lVlDEaD~mLiD~a~tp 214 (853)
T 2fsf_A 138 LFEFLG-LTVGINLPGMPAP--AKREAYAADITYGTNNEYGFDYLRDNMAFSPEERVQRKLHYALVDEVDSILIDEARTP 214 (853)
T ss_dssp HHHHTT-CCEEECCTTCCHH--HHHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCSCCEEEESCHHHHTTTTTTCE
T ss_pred HHHhcC-CeEEEEeCCCCHH--HHHHhcCCCEEEECCchhhHHHHHhhhhccHhHhcccCCcEEEECchHHHHHhcCccc
Confidence 998876 5667788887654 233344689999999999 78776532 2556789999999999998 433
Q ss_pred ------------chHHHHHHHHHhccCCCCC-----CCCCCcccccceeE------------------------EEEEEe
Q 010357 186 ------------FGKEIEEILDILGSRNIGS-----IGEGNEVSNVKRQN------------------------LLLSAT 224 (512)
Q Consensus 186 ------------~~~~~~~i~~~~~~~~~~~-----~~~~~~~~~~~~~~------------------------i~~SAT 224 (512)
+...+..++..++...... ....-..-....++ .++|||
T Consensus 215 LIiSg~~~~~~~~y~~i~~iv~~L~~~~~~~~~~~~~~~dy~vdek~rqv~lte~g~~~~e~~l~~~~l~~~~~~Lfsat 294 (853)
T 2fsf_A 215 LIISGPAEDSSEMYKRVNKIIPHLIRQEKEDSETFQGEGHFSVDEKSRQVNLTERGLVLIEELLVKEGIMDEGESLYSPA 294 (853)
T ss_dssp EEEEEC--------------------------------------------------------------------------
T ss_pred ccccCCCccchhHHHHHHHHHHhchhhhccccccccccccceeccccceEEEcHHHHHHHHHHHHhCCcccccccccCcc
Confidence 5667778887776410000 00000000001122 178888
Q ss_pred cchhhHHHH-----Hhhc-C-------CCeEEccCCCcCCCCccccccCCcccchh-----hhccCCCcccc--------
Q 010357 225 LNEKVNHLA-----KISL-E-------TPVLIGLDEKKLPEDKSHVRFGSLESDVK-----EEVEHPSTTMR-------- 278 (512)
Q Consensus 225 ~~~~~~~~~-----~~~~-~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~-------- 278 (512)
.+.....+. ...+ . ++.++.++. ..........|.+...... ...........
T Consensus 295 ~~~~~~~i~~al~A~~l~~~d~dYiV~d~~vviVde-~tgR~m~grr~sdGLhQaieake~v~I~~e~~tla~It~qnyf 373 (853)
T 2fsf_A 295 NIMLMHHVTAALRAHALFTRDVDYIVKDGEVIIVDE-HTGRTMQGRRWSDGLHQAVEAKEGVQIQNENQTLASITFQNYF 373 (853)
T ss_dssp ---------------------------------------------------------------CCCCCEEEEEEEHHHHH
T ss_pred cchHHHHHHHHHHHHHHhhcCccceeecCcEEEEec-ccCcccCCCccchhhhHHHHhcccceecccccccceeehHHHH
Confidence 653211111 0111 1 111111110 0000000000000000000 00000000000
Q ss_pred -----------------------------ccccccccccceeeeEEEecCCchHHHHHHHHHhhhccccCceEEEEeecc
Q 010357 279 -----------------------------STTEDFKLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTC 329 (512)
Q Consensus 279 -----------------------------~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~lvf~~~~ 329 (512)
..+........-.+.++.....+|...+...+.... ..+.++||||+|+
T Consensus 374 r~Y~kl~GmTGTa~te~~ef~~iY~l~vv~IPtn~p~~R~d~~d~v~~~~~~K~~al~~~i~~~~--~~gqpvLVft~si 451 (853)
T 2fsf_A 374 RLYEKLAGMTGTADTEAFEFSSIYKLDTVVVPTNRPMIRKDLPDLVYMTEAEKIQAIIEDIKERT--AKGQPVLVGTISI 451 (853)
T ss_dssp TTSSEEEEEECTTCCCHHHHHHHHCCEEEECCCSSCCCCEECCCEEESSHHHHHHHHHHHHHHHH--TTTCCEEEEESSH
T ss_pred hhhhhhhcCCCCchhHHHHHHHHhCCcEEEcCCCCCceeecCCcEEEeCHHHHHHHHHHHHHHHh--cCCCCEEEEECcH
Confidence 000000001111122344566778888888886542 3467999999999
Q ss_pred hhhhhHHHhhhhhcCCCCCCChhHHHhhhhccceeeecCCCCHHHHHHHHHhhhcCCCcEEEeecccccCCCCCCC----
Q 010357 330 DAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKV---- 405 (512)
Q Consensus 330 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~l~g~~~~~~r~~~~~~f~~~~~~vLvaT~~~~~Gldip~~---- 405 (512)
..++.++..|... ++++..+||++...++..+.+.|+.| .|+|||+++++|+|++..
T Consensus 452 e~se~Ls~~L~~~-----------------gi~~~vLnak~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~gn~~ 512 (853)
T 2fsf_A 452 EKSELVSNELTKA-----------------GIKHNVLNAKFHANEAAIVAQAGYPA--AVTIATNMAGRGTDIVLGGSWQ 512 (853)
T ss_dssp HHHHHHHHHHHHT-----------------TCCCEECCTTCHHHHHHHHHTTTSTT--CEEEEESCCSSCSCCCTTCCHH
T ss_pred HHHHHHHHHHHHC-----------------CCCEEEecCChhHHHHHHHHhcCCCC--eEEEecccccCCcCccCCCchH
Confidence 9999999999998 88999999999888888999999988 799999999999999863
Q ss_pred ---------------------------------cEEEEeCCCCChhHHHHhhhhcccCCCCccEEEecCccc
Q 010357 406 ---------------------------------KCIIQYDSAGEATEYVHRVGRTARLGERGDSLLFLQPVE 444 (512)
Q Consensus 406 ---------------------------------~~VI~~~~p~s~~~~~Q~~GRagR~g~~g~~~~~~~~~~ 444 (512)
.+||+++.|.|...|.||+||+||.|.+|.++.|++..|
T Consensus 513 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGl~VI~te~pes~riy~qr~GRTGRqGd~G~s~~fls~eD 584 (853)
T 2fsf_A 513 AEVAALENPTAEQIEKIKADWQVRHDAVLEAGGLHIIGTERHESRRIDNQLRGRSGRQGDAGSSRFYLSMED 584 (853)
T ss_dssp HHHHHCSSCCSSHHHHHHHHHHHHHHHHHHTTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEETTS
T ss_pred hhhhhcccchhHHHHHHHHHhhhhhhHHHhcCCcEEEEccCCCCHHHHHhhccccccCCCCeeEEEEecccH
Confidence 599999999999999999999999999999999999877
No 40
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=100.00 E-value=3.1e-40 Score=335.74 Aligned_cols=368 Identities=17% Similarity=0.188 Sum_probs=257.0
Q ss_pred HhcCCCCCcHHHHHHHHHhhcCCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcHHHHHHHHHHHH
Q 010357 35 ERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILH 114 (512)
Q Consensus 35 ~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~ 114 (512)
..+|+ +|+++|..+++.+++|+ +..++||+|||++|.+|++..... +..++|++||++||.|.++++.
T Consensus 106 R~lG~-rP~~VQ~~~ip~Ll~G~--Iaem~TGeGKTLa~~LP~~l~aL~---------g~~v~VvTpTreLA~Qdae~m~ 173 (922)
T 1nkt_A 106 RVLDQ-RPFDVQVMGAAALHLGN--VAEMKTGEGKTLTCVLPAYLNALA---------GNGVHIVTVNDYLAKRDSEWMG 173 (922)
T ss_dssp HHHSC-CCCHHHHHHHHHHHTTE--EEECCTTSCHHHHTHHHHHHHHTT---------TSCEEEEESSHHHHHHHHHHHH
T ss_pred HHcCC-CCCHHHHHHHHhHhcCC--EEEecCCCccHHHHHHHHHHHHHh---------CCCeEEEeCCHHHHHHHHHHHH
Confidence 45699 69999999999999997 999999999999999999754443 5569999999999999999999
Q ss_pred HHHhhcCCcceEEEeCCCchHHHHHHHcCCCCEEEeCChHH-HHHHhhc-----CCCcCCceeEEEEcchhHHH-hc---
Q 010357 115 KLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRL-LDHLKHT-----SSFLHTNLRWIIFDEADRIL-EL--- 184 (512)
Q Consensus 115 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~Iiv~Tp~~l-~~~l~~~-----~~~~~~~~~~lV~DEah~l~-~~--- 184 (512)
.+...++ +.++++++|.+.... ....+++|+|+||++| ++++... ..+.+..+.++|+||||+++ +.
T Consensus 174 ~l~~~lG-Lsv~~i~gg~~~~~r--~~~y~~DIvygTpgrlgfDyLrD~m~~~~~~l~lr~l~~lIVDEaDsmLiDeart 250 (922)
T 1nkt_A 174 RVHRFLG-LQVGVILATMTPDER--RVAYNADITYGTNNEFGFDYLRDNMAHSLDDLVQRGHHYAIVDEVDSILIDEART 250 (922)
T ss_dssp HHHHHTT-CCEEECCTTCCHHHH--HHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEETTHHHHHTTGGGS
T ss_pred HHHhhcC-CeEEEEeCCCCHHHH--HHhcCCCEEEECchHhhHHHHHhhhhccHhhhccCCCCEEEEeChHHHHHhcCcc
Confidence 9998877 567778888765433 3334689999999999 7777653 23566789999999999998 42
Q ss_pred ------------CchHHHHHHHHHhccCCCCCCCCCCcccccceeEE-----------------EEEEecchhhHHH---
Q 010357 185 ------------GFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNL-----------------LLSATLNEKVNHL--- 232 (512)
Q Consensus 185 ------------~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i-----------------~~SAT~~~~~~~~--- 232 (512)
++...+..++..++... .-..-....+++ ++|||.+.....+
T Consensus 251 PLiiSg~~~~~~~~y~~i~~iv~~L~~~~------dy~vDek~rqv~Lte~G~~~~e~~l~i~~Lfsat~~~l~~~i~~a 324 (922)
T 1nkt_A 251 PLIISGPADGASNWYTEFARLAPLMEKDV------HYEVDLRKRTVGVHEKGVEFVEDQLGIDNLYEAANSPLVSYLNNA 324 (922)
T ss_dssp CEEEEEECCCCHHHHHHHHHHHHHSCBTT------TEEEETTTTEEEECHHHHHHHHHHHTCSSTTCSTTCCHHHHHHHH
T ss_pred ceeecCCCCcchhHHHHHHHHHHhCcccc------cceeccCcceEEecHhHHHHHHHHhCCccccCCcchhHHHHHHHH
Confidence 47788999998886210 000000156677 7899976422221
Q ss_pred H--H-hhcCCCeEE-------ccCCCcCCCCccccccCCcccchhhhccCCCccc-----cccc----------------
Q 010357 233 A--K-ISLETPVLI-------GLDEKKLPEDKSHVRFGSLESDVKEEVEHPSTTM-----RSTT---------------- 281 (512)
Q Consensus 233 ~--~-~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~---------------- 281 (512)
. . .+..+..++ .++. ..........|.+.........+...... ....
T Consensus 325 L~A~~l~~~d~dYiV~dg~vviVDe-~TGR~m~grr~sdGLHQaieaKe~V~I~~e~~TlatIt~Qnyfr~Y~kL~GMTG 403 (922)
T 1nkt_A 325 LKAKELFSRDKDYIVRDGEVLIVDE-FTGRVLIGRRYNEGMHQAIEAKEHVEIKAENQTLATITLQNYFRLYDKLAGMTG 403 (922)
T ss_dssp HHHHHHCCBTTTEEECSSCEEEBCS-SSCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEECHHHHHTTSSEEEEEES
T ss_pred HHHHHHhhcccceeeecCceEEEec-ccCcccCCccccchhhHHHhccccccccccccccceeehHHHHHhhhhhhcccc
Confidence 1 1 122222222 1111 11111111111111100000000000000 0000
Q ss_pred ---------------ccccccc------ceeeeEEEecCCchHHHHHHHHHhhhccccCceEEEEeecchhhhhHHHhhh
Q 010357 282 ---------------EDFKLPA------QLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLS 340 (512)
Q Consensus 282 ---------------~~~~~~~------~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~ 340 (512)
....+|. .-.+..+.....+|...+...+.... ..+.++||||+|++.++.++..|.
T Consensus 404 Ta~te~~Ef~~iY~l~vv~IPtn~p~~R~d~~d~v~~t~~~K~~al~~~i~~~~--~~gqpvLVft~Sie~sE~Ls~~L~ 481 (922)
T 1nkt_A 404 TAQTEAAELHEIYKLGVVSIPTNMPMIREDQSDLIYKTEEAKYIAVVDDVAERY--AKGQPVLIGTTSVERSEYLSRQFT 481 (922)
T ss_dssp CCGGGHHHHHHHHCCEEEECCCSSCCCCEECCCEEESCHHHHHHHHHHHHHHHH--HTTCCEEEEESCHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHhCCCeEEeCCCCCcccccCCcEEEeCHHHHHHHHHHHHHHHH--hcCCcEEEEECCHHHHHHHHHHHH
Confidence 0000111 11122344555678888888886542 345799999999999999999999
Q ss_pred hhcCCCCCCChhHHHhhhhccceeeecCCCCHHHHHHHHHhhhcCCCcEEEeecccccCCCCCCC---------------
Q 010357 341 EFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKV--------------- 405 (512)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~v~~l~g~~~~~~r~~~~~~f~~~~~~vLvaT~~~~~Gldip~~--------------- 405 (512)
.. ++++..+||++...++..+.+.|+.| .|+|||+++++|+|++..
T Consensus 482 ~~-----------------Gi~~~vLnak~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~~~~~~~~~~~~~~~~ 542 (922)
T 1nkt_A 482 KR-----------------RIPHNVLNAKYHEQEATIIAVAGRRG--GVTVATNMAGRGTDIVLGGNVDFLTDQRLRERG 542 (922)
T ss_dssp HT-----------------TCCCEEECSSCHHHHHHHHHTTTSTT--CEEEEETTCSTTCCCCTTCCHHHHHHHHHHHTT
T ss_pred HC-----------------CCCEEEecCChhHHHHHHHHhcCCCC--eEEEecchhhcCccccCCCCHHHHHHHHHhhcc
Confidence 98 88999999998888888888999888 799999999999999964
Q ss_pred -------------------------------------cEEEEeCCCCChhHHHHhhhhcccCCCCccEEEecCccch
Q 010357 406 -------------------------------------KCIIQYDSAGEATEYVHRVGRTARLGERGDSLLFLQPVEM 445 (512)
Q Consensus 406 -------------------------------------~~VI~~~~p~s~~~~~Q~~GRagR~g~~g~~~~~~~~~~~ 445 (512)
.+||+++.|.|...|.||+||+||.|.+|.++.|++..|.
T Consensus 543 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGlhVI~te~pes~riy~qr~GRTGRqGdpG~s~fflSleD~ 619 (922)
T 1nkt_A 543 LDPVETPEEYEAAWHSELPIVKEEASKEAKEVIEAGGLYVLGTERHESRRIDNQLRGRSGRQGDPGESRFYLSLGDE 619 (922)
T ss_dssp CCTTTSHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTSEEEEECSCCSSHHHHHHHHHTSSGGGCCEEEEEEEETTSH
T ss_pred ccccccchhhHHHHHHHHHHHHHHHHHhhhHHHhcCCcEEEeccCCCCHHHHHHHhcccccCCCCeeEEEEechhHH
Confidence 4999999999999999999999999999999999988763
No 41
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=100.00 E-value=1.8e-39 Score=340.74 Aligned_cols=408 Identities=16% Similarity=0.181 Sum_probs=267.9
Q ss_pred ccCCcccCCCCHHHHHHHHHhcCCCCCcHHHHHHHHHhh-cCCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCc
Q 010357 16 ASCSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVIL-SGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGT 94 (512)
Q Consensus 16 ~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~Q~~~~~~~~-~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~ 94 (512)
...+|+++++++.+.+.+.++ + ..|++.|+++++.++ .+++++++||||||||......+...... .+.+.
T Consensus 70 ~~~~f~~~~l~~~~~~~l~~r-~-~lP~~~q~~~i~~~l~~~~~vii~gpTGSGKTtllp~ll~~~~~~------~~~g~ 141 (773)
T 2xau_A 70 KINPFTGREFTPKYVDILKIR-R-ELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTTQIPQFVLFDEMP------HLENT 141 (773)
T ss_dssp SBCTTTCSBCCHHHHHHHHHH-T-TSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHCG------GGGTC
T ss_pred CCCCccccCCCHHHHHHHHHh-h-cCChHHHHHHHHHHHhCCCeEEEECCCCCCHHHHHHHHHHHhccc------cCCCc
Confidence 456899999999999999765 5 569999999998777 45679999999999998433322222111 01256
Q ss_pred eEEEEcCcHHHHHHHHHHHHHHHhhcCCcceEEEeCCCchHHHHHHHcCCCCEEEeCChHHHHHHhhcCCCcCCceeEEE
Q 010357 95 FALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWII 174 (512)
Q Consensus 95 ~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lV 174 (512)
++++++|+++|+.|+++.+.......-...++....... ......+|+++||+++.+.+... ..+.++++||
T Consensus 142 ~ilvl~P~r~La~q~~~~l~~~~~~~v~~~vG~~i~~~~------~~~~~~~I~v~T~G~l~r~l~~~--~~l~~~~~lI 213 (773)
T 2xau_A 142 QVACTQPRRVAAMSVAQRVAEEMDVKLGEEVGYSIRFEN------KTSNKTILKYMTDGMLLREAMED--HDLSRYSCII 213 (773)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHTTCCBTTTEEEEETTEE------ECCTTCSEEEEEHHHHHHHHHHS--TTCTTEEEEE
T ss_pred eEEecCchHHHHHHHHHHHHHHhCCchhheecceecccc------ccCCCCCEEEECHHHHHHHHhhC--ccccCCCEEE
Confidence 799999999999999887755432111122222211111 11245789999999999877653 3466999999
Q ss_pred EcchhH-HHhcC-chHHHHHHHHHhccCCCCCCCCCCcccccceeEEEEEEecchhhHHHHHhhcCCCeEEccCCCcCCC
Q 010357 175 FDEADR-ILELG-FGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLPE 252 (512)
Q Consensus 175 ~DEah~-l~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (512)
+||+|. .++.. ....+..+....+ ..+++++|||++. ..+..++...+ .+.+.....
T Consensus 214 lDEah~R~ld~d~~~~~l~~l~~~~~----------------~~~iIl~SAT~~~--~~l~~~~~~~~-vi~v~gr~~-- 272 (773)
T 2xau_A 214 LDEAHERTLATDILMGLLKQVVKRRP----------------DLKIIIMSATLDA--EKFQRYFNDAP-LLAVPGRTY-- 272 (773)
T ss_dssp ECSGGGCCHHHHHHHHHHHHHHHHCT----------------TCEEEEEESCSCC--HHHHHHTTSCC-EEECCCCCC--
T ss_pred ecCccccccchHHHHHHHHHHHHhCC----------------CceEEEEeccccH--HHHHHHhcCCC-cccccCccc--
Confidence 999995 33321 2233333333221 6799999999953 44554443333 333332211
Q ss_pred CccccccCCcccchhhhccCCCccccccccccccccceeeeEEEecCCchHHHHHHHHHhhhccccCceEEEEeecchhh
Q 010357 253 DKSHVRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAV 332 (512)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~lvf~~~~~~~ 332 (512)
.+...+...+..+........+.+......++++||||++++.+
T Consensus 273 ------------------------------------pv~~~~~~~~~~~~~~~~l~~l~~~~~~~~~g~iLVF~~~~~~i 316 (773)
T 2xau_A 273 ------------------------------------PVELYYTPEFQRDYLDSAIRTVLQIHATEEAGDILLFLTGEDEI 316 (773)
T ss_dssp ------------------------------------CEEEECCSSCCSCHHHHHHHHHHHHHHHSCSCEEEEECSCHHHH
T ss_pred ------------------------------------ceEEEEecCCchhHHHHHHHHHHHHHHhcCCCCEEEECCCHHHH
Confidence 11122222233344445555555544444678999999999999
Q ss_pred hhHHHhhhhhcCCCCCCChhHH--HhhhhccceeeecCCCCHHHHHHHHHhhh-----cCCCcEEEeecccccCCCCCCC
Q 010357 333 DFHYSLLSEFQWSPHSQPDMEL--KQLFLRCKTFRLHGNMKQEDRRTTFGAFK-----TEKKALLLSTDVAARGLDFPKV 405 (512)
Q Consensus 333 ~~l~~~l~~~~~~~~~~~~~~~--~~~~~~~~v~~l~g~~~~~~r~~~~~~f~-----~~~~~vLvaT~~~~~Gldip~~ 405 (512)
+.+++.|.+... .+ .....++.+..+||+|+..+|..+++.|+ +|..+|||||+++++|||+|++
T Consensus 317 ~~l~~~L~~~~~--------~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kVlVAT~iae~GidIp~v 388 (773)
T 2xau_A 317 EDAVRKISLEGD--------QLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVISTNIAETSLTIDGI 388 (773)
T ss_dssp HHHHHHHHHHHH--------HHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEEEEECTHHHHTCCCTTE
T ss_pred HHHHHHHHHHHH--------hhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceEEEEeCcHHHhCcCcCCe
Confidence 999999975210 00 00012778999999999999999999999 9999999999999999999999
Q ss_pred cEEEEeCC------------------CCChhHHHHhhhhcccCCCCccEEEecCccchhHHHHHHHcCC-CCCccChhhH
Q 010357 406 KCIIQYDS------------------AGEATEYVHRVGRTARLGERGDSLLFLQPVEMDYLQDLEKHGV-SLTEYPLLKV 466 (512)
Q Consensus 406 ~~VI~~~~------------------p~s~~~~~Q~~GRagR~g~~g~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~ 466 (512)
++||+++. |.|..+|.||+|||||. ++|.|+.++++.+.. ..+..... ++...++...
T Consensus 389 ~~VId~g~~k~~~yd~~~g~~~L~~~p~S~~s~~QR~GRaGR~-~~G~~~~l~~~~~~~--~~l~~~~~pEi~r~~L~~~ 465 (773)
T 2xau_A 389 VYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT-RPGKCFRLYTEEAFQ--KELIEQSYPEILRSNLSST 465 (773)
T ss_dssp EEEEECSEEEEEEEETTTTEEEEEEEECCHHHHHHHHHGGGSS-SSEEEEESSCHHHHH--HTSCSSCCCGGGGSCCHHH
T ss_pred EEEEeCCCccceeeccccCccccccccCCHHHHHhhccccCCC-CCCEEEEEecHHHhc--ccccccCCCccccCcHHHH
Confidence 99999887 88999999999999999 889999999876531 11211111 1122223332
Q ss_pred hhhccccCCCCccccccCccchhhHHHHHHHHHHHHHhccccc
Q 010357 467 LDSFPLYGQKPRVKKFLTTESHPWILSLQNALESFIIHEILSC 509 (512)
Q Consensus 467 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~ 509 (512)
+-.+...... .. ....+--.|....+.+.++.+...+.++.
T Consensus 466 ~L~l~~~gi~-~~-~~f~~~~~p~~~~i~~a~~~L~~lgald~ 506 (773)
T 2xau_A 466 VLELKKLGID-DL-VHFDFMDPPAPETMMRALEELNYLACLDD 506 (773)
T ss_dssp HHHHHHTTCC-CG-GGCCCSSCCCHHHHHHHHHHHHHTTSBCT
T ss_pred HHHHHHcCCC-Ch-hhccccCCCcHHHHHHHHHHHHHcCCccc
Confidence 2221111111 11 11222233467788889988888777653
No 42
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=100.00 E-value=5.2e-40 Score=334.82 Aligned_cols=336 Identities=15% Similarity=0.165 Sum_probs=229.4
Q ss_pred CCcHHHHHHHHHhhcCCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHHhhc
Q 010357 41 APTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRF 120 (512)
Q Consensus 41 ~~~~~Q~~~~~~~~~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~ 120 (512)
+|+++|.++++.+++++++++++|||+|||++++.++...+.. ...++||++|+++|+.|+.+.+..+...
T Consensus 113 ~l~~~Q~~ai~~~~~~~~~ll~~~tGsGKT~~~~~~~~~~~~~--------~~~~vlvl~P~~~L~~Q~~~~~~~~~~~- 183 (510)
T 2oca_A 113 EPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLEN--------YEGKILIIVPTTALTTQMADDFVDYRLF- 183 (510)
T ss_dssp CCCHHHHHHHHHHHHHSEEEEECCSTTTHHHHHHHHHHHHHHH--------CSSEEEEEESSHHHHHHHHHHHHHTTSS-
T ss_pred CCCHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHHhC--------CCCeEEEEECcHHHHHHHHHHHHHhhcC-
Confidence 5999999999999999999999999999999999999887764 1348999999999999999999887432
Q ss_pred CCcceEEEeCCCchHHHHHHHcCCCCEEEeCChHHHHHHhhcCCCcCCceeEEEEcchhHHHhcCchHHHHHHHHHhccC
Q 010357 121 HWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILGSR 200 (512)
Q Consensus 121 ~~~~~~~~~~g~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lV~DEah~l~~~~~~~~~~~i~~~~~~~ 200 (512)
....+..+.++...... .....+|+|+||+.+... ....+.++++||+||||++.. ..+..++..+..
T Consensus 184 ~~~~v~~~~~~~~~~~~---~~~~~~I~i~T~~~l~~~----~~~~~~~~~liIiDE~H~~~~----~~~~~il~~~~~- 251 (510)
T 2oca_A 184 SHAMIKKIGGGASKDDK---YKNDAPVVVGTWQTVVKQ----PKEWFSQFGMMMNDECHLATG----KSISSIISGLNN- 251 (510)
T ss_dssp CGGGEEECGGGCCTTGG---GCTTCSEEEEEHHHHTTS----CGGGGGGEEEEEEETGGGCCH----HHHHHHGGGCTT-
T ss_pred CccceEEEecCCccccc---cccCCcEEEEeHHHHhhc----hhhhhhcCCEEEEECCcCCCc----ccHHHHHHhccc-
Confidence 22345556666544332 456689999999987542 223456899999999999754 345555555433
Q ss_pred CCCCCCCCCcccccceeEEEEEEecchhhHHHHH-hhcCCCeEEccCCCcCCCCccc--cccCCcccchhhhccCCCccc
Q 010357 201 NIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAK-ISLETPVLIGLDEKKLPEDKSH--VRFGSLESDVKEEVEHPSTTM 277 (512)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 277 (512)
..+++++|||+++....... ..+..+..+............. ..+............
T Consensus 252 --------------~~~~l~lSATp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~------ 311 (510)
T 2oca_A 252 --------------CMFKFGLSGSLRDGKANIMQYVGMFGEIFKPVTTSKLMEDGQVTELKINSIFLRYPDEFT------ 311 (510)
T ss_dssp --------------CCEEEEEESCGGGCSSCHHHHHHHHCSEECCCCCC---------CCEEEEEEEECCHHHH------
T ss_pred --------------CcEEEEEEeCCCCCcccHHHhHHhhCCeEEeeCHHHHhhCCcCCCceEEEEeecCChHHh------
Confidence 67899999999765432211 1122233322222211100000 000000000000000
Q ss_pred cccccccccccceee-eEEEecCCchHHHHHHHHHhhhccccCceEEEEeecchhhhhHHHhhhhhcCCCCCCChhHHHh
Q 010357 278 RSTTEDFKLPAQLVQ-RYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQ 356 (512)
Q Consensus 278 ~~~~~~~~~~~~~~~-~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 356 (512)
... ....... .........+...+.+.+..... ..+.+++||++ .+.++.+++.|.+.
T Consensus 312 -~~~----~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~~~ivf~~-~~~~~~l~~~L~~~-------------- 370 (510)
T 2oca_A 312 -TKL----KGKTYQEEIKIITGLSKRNKWIAKLAIKLAQ-KDENAFVMFKH-VSHGKAIFDLIKNE-------------- 370 (510)
T ss_dssp -HHH----TTCCHHHHHHHHHTCHHHHHHHHHHHHHHHT-TTCEEEEEESS-HHHHHHHHHHHHTT--------------
T ss_pred -ccc----cccchHHHHHHHhccHHHHHHHHHHHHHHHh-cCCCeEEEEec-HHHHHHHHHHHHHc--------------
Confidence 000 0000000 00001122344556666665543 23456666666 88888899999876
Q ss_pred hhhccceeeecCCCCHHHHHHHHHhhhcCCCcEEEee-cccccCCCCCCCcEEEEeCCCCChhHHHHhhhhcccCCCCcc
Q 010357 357 LFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLST-DVAARGLDFPKVKCIIQYDSAGEATEYVHRVGRTARLGERGD 435 (512)
Q Consensus 357 ~~~~~~v~~l~g~~~~~~r~~~~~~f~~~~~~vLvaT-~~~~~Gldip~~~~VI~~~~p~s~~~~~Q~~GRagR~g~~g~ 435 (512)
+..+..+||+|+..+|+.+++.|++|+.+||||| +++++|+|+|++++||++++|+++..|.|++||+||.|+.+.
T Consensus 371 ---~~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~~~~~GiDip~v~~vi~~~~~~s~~~~~Q~~GR~gR~g~~~~ 447 (510)
T 2oca_A 371 ---YDKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVFSTGISVKNLHHVVLAHGVKSKIIVLQTIGRVLRKHGSKT 447 (510)
T ss_dssp ---CSSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHHHHHHSCCCCSEEEEEESSCCCSCCHHHHHHHHHHTTTCCCC
T ss_pred ---CCCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEcChhhcccccccCcEEEEeCCCCCHHHHHHHHhcccccCCCCc
Confidence 5589999999999999999999999999999999 999999999999999999999999999999999999998886
Q ss_pred EEEecC
Q 010357 436 SLLFLQ 441 (512)
Q Consensus 436 ~~~~~~ 441 (512)
++++++
T Consensus 448 ~v~i~~ 453 (510)
T 2oca_A 448 IATVWD 453 (510)
T ss_dssp CCEEEE
T ss_pred eEEEEE
Confidence 666655
No 43
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=100.00 E-value=1.3e-39 Score=328.59 Aligned_cols=326 Identities=20% Similarity=0.230 Sum_probs=217.5
Q ss_pred CCcHHHHHHHHHhhcCCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHHhhc
Q 010357 41 APTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRF 120 (512)
Q Consensus 41 ~~~~~Q~~~~~~~~~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~ 120 (512)
+|+++|.++++.+++++++++++|||+|||++++.++... +.++||++|+++|+.||.+.+..+
T Consensus 93 ~l~~~Q~~ai~~i~~~~~~ll~~~TGsGKT~~~l~~i~~~------------~~~~Lvl~P~~~L~~Q~~~~~~~~---- 156 (472)
T 2fwr_A 93 SLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL------------STPTLIVVPTLALAEQWKERLGIF---- 156 (472)
T ss_dssp CBCHHHHHHHHHHTTTTEEEEECCTTSCHHHHHHHHHHHH------------CSCEEEEESSHHHHHHHHHHGGGG----
T ss_pred CcCHHHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHc------------CCCEEEEECCHHHHHHHHHHHHhC----
Confidence 4999999999999999899999999999999999988765 456999999999999999999883
Q ss_pred CCcceEEEeCCCchHHHHHHHcCCCCEEEeCChHHHHHHhhcCCCcCCceeEEEEcchhHHHhcCchHHHHHHHHHhccC
Q 010357 121 HWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILGSR 200 (512)
Q Consensus 121 ~~~~~~~~~~g~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lV~DEah~l~~~~~~~~~~~i~~~~~~~ 200 (512)
+...++.+.++.. ...+|+|+||+.+...+... ..++++||+||||++.+..+.. ++..++
T Consensus 157 ~~~~v~~~~g~~~---------~~~~Ivv~T~~~l~~~~~~~----~~~~~liIvDEaH~~~~~~~~~----~~~~~~-- 217 (472)
T 2fwr_A 157 GEEYVGEFSGRIK---------ELKPLTVSTYDSAYVNAEKL----GNRFMLLIFDEVHHLPAESYVQ----IAQMSI-- 217 (472)
T ss_dssp CGGGEEEBSSSCB---------CCCSEEEEEHHHHHHTHHHH----TTTCSEEEEETGGGTTSTTTHH----HHHTCC--
T ss_pred CCcceEEECCCcC---------CcCCEEEEEcHHHHHHHHHh----cCCCCEEEEECCcCCCChHHHH----HHHhcC--
Confidence 3222555655543 24689999999998766432 1358999999999998776653 333332
Q ss_pred CCCCCCCCCcccccceeEEEEEEecchhh--HHHHHhhcCCCeEEccCCCc-----CCCCccccccCCcccchh------
Q 010357 201 NIGSIGEGNEVSNVKRQNLLLSATLNEKV--NHLAKISLETPVLIGLDEKK-----LPEDKSHVRFGSLESDVK------ 267 (512)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~i~~SAT~~~~~--~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~------ 267 (512)
..+++++|||+.+.. .......+. +......... +.................
T Consensus 218 --------------~~~~l~lSATp~~~~~~~~~l~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 282 (472)
T 2fwr_A 218 --------------APFRLGLTATFEREDGRHEILKEVVG-GKVFELFPDSLAGKHLAKYTIKRIFVPLAEDERVEYEKR 282 (472)
T ss_dssp --------------CSEEEEEESCCCCTTSGGGSHHHHTC-CEEEECCHHHHTSCCCCSEEECCEEECCCHHHHHHTTTT
T ss_pred --------------CCeEEEEecCccCCCCHHHHHHHHhC-CeEeecCHHHHhcCcCCCeEEEEEEcCCCHHHHHHHHHH
Confidence 568899999997321 101111111 1111111000 000000000000000000
Q ss_pred -----hhccCCCcc--cccccccc------------ccccceeeeEEEecCCchHHHHHHHHHhhhccccCceEEEEeec
Q 010357 268 -----EEVEHPSTT--MRSTTEDF------------KLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFST 328 (512)
Q Consensus 268 -----~~~~~~~~~--~~~~~~~~------------~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~lvf~~~ 328 (512)
......... ........ .................|...+.+++.. ..+.++||||++
T Consensus 283 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~----~~~~k~lvF~~~ 358 (472)
T 2fwr_A 283 EKVYKQFLRARGITLRRAEDFNKIVMASGYDERAYEALRAWEEARRIAFNSKNKIRKLREILER----HRKDKIIIFTRH 358 (472)
T ss_dssp THHHHSCSSSCCCTTTCCSSSTTTTTTTCCSSSSSTTTHHHHHHHHHHHSCSHHHHHHHHHHHH----TSSSCBCCBCSC
T ss_pred HHHHHHHHHhcCccccchhhHHHHHHHhccCHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHh----CCCCcEEEEECC
Confidence 000000000 00000000 0000000001112345667777777765 357899999999
Q ss_pred chhhhhHHHhhhhhcCCCCCCChhHHHhhhhccceeeecCCCCHHHHHHHHHhhhcCCCcEEEeecccccCCCCCCCcEE
Q 010357 329 CDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCI 408 (512)
Q Consensus 329 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~l~g~~~~~~r~~~~~~f~~~~~~vLvaT~~~~~Gldip~~~~V 408 (512)
++.++.+++.|. +..+||+++..+|+.+++.|++|+.+|||||+++++|+|+|++++|
T Consensus 359 ~~~~~~l~~~l~----------------------~~~~~g~~~~~~R~~~~~~F~~g~~~vLv~T~~~~~Gldlp~~~~V 416 (472)
T 2fwr_A 359 NELVYRISKVFL----------------------IPAITHRTSREEREEILEGFRTGRFRAIVSSQVLDEGIDVPDANVG 416 (472)
T ss_dssp HHHHHHHHHHTT----------------------CCBCCSSSCSHHHHTHHHHHHHSSCSBCBCSSCCCSSSCSCCBSEE
T ss_pred HHHHHHHHHHhC----------------------cceeeCCCCHHHHHHHHHHHhCCCCCEEEEcCchhcCcccccCcEE
Confidence 999999988873 3457999999999999999999999999999999999999999999
Q ss_pred EEeCCCCChhHHHHhhhhcccCCCC-ccEEE--ecCc
Q 010357 409 IQYDSAGEATEYVHRVGRTARLGER-GDSLL--FLQP 442 (512)
Q Consensus 409 I~~~~p~s~~~~~Q~~GRagR~g~~-g~~~~--~~~~ 442 (512)
|+++.|+|+..|.||+||+||.|+. +.+++ +++.
T Consensus 417 i~~~~~~s~~~~~Q~~GR~~R~g~~k~~~~i~~lv~~ 453 (472)
T 2fwr_A 417 VIMSGSGSAREYIQRLGRILRPSKGKKEAVLYELISR 453 (472)
T ss_dssp EEECCSSCCHHHHHHHHHSBCCCTTTCCEEEEEEEEC
T ss_pred EEECCCCCHHHHHHHHhhccCCCCCCceEEEEEEEeC
Confidence 9999999999999999999999865 44443 4443
No 44
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=100.00 E-value=2e-39 Score=322.98 Aligned_cols=289 Identities=16% Similarity=0.152 Sum_probs=207.9
Q ss_pred CCCCCcHHHHHHHHHhhcCCCE-EEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHH
Q 010357 38 GFEAPTKVQAQAIPVILSGRHV-LVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKL 116 (512)
Q Consensus 38 ~~~~~~~~Q~~~~~~~~~~~~~-lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 116 (512)
|+..|+|+|+ +++.+++++++ ++++|||||||++|++|++..+.. .+.+++|++||++|+.|+.+.+...
T Consensus 1 G~~q~~~iq~-~i~~~l~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~--------~~~~~lvl~Ptr~La~Q~~~~l~g~ 71 (451)
T 2jlq_A 1 GSAMGEPDYE-VDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALL--------RRLRTLILAPTRVVAAEMEEALRGL 71 (451)
T ss_dssp CCCCCSCCCC-CCGGGGSTTCEEEECCCTTSSCCTTHHHHHHHHHHH--------TTCCEEEEESSHHHHHHHHHHTTTS
T ss_pred CCCCCCCcHH-HHHHHHhcCCeEEEECCCCCCHhhHHHHHHHHHHHh--------cCCcEEEECCCHHHHHHHHHHhcCc
Confidence 6778999985 79999988877 899999999999999999876654 2567999999999999999877522
Q ss_pred HhhcCCcceEEEeCCCchHHHHHHHcCCCCEEEeCChHHHHHHhhcCCCcCCceeEEEEcchhHHHhcCchHHHHHHHHH
Q 010357 117 LHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDI 196 (512)
Q Consensus 117 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lV~DEah~l~~~~~~~~~~~i~~~ 196 (512)
.+......... ....+..|.++|++.+.+.+... ..+.++++||+||||++ +..+......+...
T Consensus 72 -------~v~~~~~~~~~-----~~~~~~~i~~~t~~~l~~~l~~~--~~l~~~~~iViDEah~~-~~~~~~~~~~~~~~ 136 (451)
T 2jlq_A 72 -------PIRYQTPAVKS-----DHTGREIVDLMCHATFTTRLLSS--TRVPNYNLIVMDEAHFT-DPCSVAARGYISTR 136 (451)
T ss_dssp -------CEEECCTTCSC-----CCCSSCCEEEEEHHHHHHHHHHC--SCCCCCSEEEEETTTCC-SHHHHHHHHHHHHH
T ss_pred -------eeeeeeccccc-----cCCCCceEEEEChHHHHHHhhCc--ccccCCCEEEEeCCccC-CcchHHHHHHHHHh
Confidence 22221111111 12234579999999998877653 34568999999999976 32233333333222
Q ss_pred hccCCCCCCCCCCcccccceeEEEEEEecchhhHHHHHhhcCCCeEEccCCCcCCCCccccccCCcccchhhhccCCCcc
Q 010357 197 LGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLPEDKSHVRFGSLESDVKEEVEHPSTT 276 (512)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (512)
... ...+++++|||++.....+ ...++..+.....
T Consensus 137 ~~~--------------~~~~~i~~SAT~~~~~~~~---~~~~~~~~~~~~~---------------------------- 171 (451)
T 2jlq_A 137 VEM--------------GEAAAIFMTATPPGSTDPF---PQSNSPIEDIERE---------------------------- 171 (451)
T ss_dssp HHT--------------TSCEEEEECSSCTTCCCSS---CCCSSCEEEEECC----------------------------
T ss_pred hcC--------------CCceEEEEccCCCccchhh---hcCCCceEecCcc----------------------------
Confidence 211 1789999999997643221 1111111111000
Q ss_pred ccccccccccccceeeeEEEecCCchHHHHHHHHHhhhccccCceEEEEeecchhhhhHHHhhhhhcCCCCCCChhHHHh
Q 010357 277 MRSTTEDFKLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQ 356 (512)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 356 (512)
.+.. ....+...+.+ ..+++||||++++.++.+++.|...
T Consensus 172 ---------~p~~------------~~~~~~~~l~~-----~~~~~lVF~~s~~~a~~l~~~L~~~-------------- 211 (451)
T 2jlq_A 172 ---------IPER------------SWNTGFDWITD-----YQGKTVWFVPSIKAGNDIANCLRKS-------------- 211 (451)
T ss_dssp ---------CCSS------------CCSSSCHHHHH-----CCSCEEEECSSHHHHHHHHHHHHTT--------------
T ss_pred ---------CCch------------hhHHHHHHHHh-----CCCCEEEEcCCHHHHHHHHHHHHHc--------------
Confidence 0000 00001122222 2569999999999999999999887
Q ss_pred hhhccceeeecCCCCHHHHHHHHHhhhcCCCcEEEeecccccCCCCCCCcEEEEeC--------------------CCCC
Q 010357 357 LFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYD--------------------SAGE 416 (512)
Q Consensus 357 ~~~~~~v~~l~g~~~~~~r~~~~~~f~~~~~~vLvaT~~~~~Gldip~~~~VI~~~--------------------~p~s 416 (512)
++.+..+||++ +..+++.|++|+.+|||||+++++|+|+|+ ++||+++ .|.+
T Consensus 212 ---g~~~~~lh~~~----~~~~~~~f~~g~~~vLVaT~v~~~GiDip~-~~VI~~~~~~~~~~d~~~~~~l~~~~~~p~s 283 (451)
T 2jlq_A 212 ---GKRVIQLSRKT----FDTEYPKTKLTDWDFVVTTDISEMGANFRA-GRVIDPRRCLKPVILTDGPERVILAGPIPVT 283 (451)
T ss_dssp ---TCCEEEECTTT----HHHHGGGGGSSCCSEEEECGGGGSSCCCCC-SEEEECCEEEEEEEECSSSCEEEEEEEEECC
T ss_pred ---CCeEEECCHHH----HHHHHHhhccCCceEEEECCHHHhCcCCCC-CEEEECCCcccccccccccceeeecccccCC
Confidence 77888999875 467999999999999999999999999999 9999998 9999
Q ss_pred hhHHHHhhhhcccCCC-CccEEEecCcc
Q 010357 417 ATEYVHRVGRTARLGE-RGDSLLFLQPV 443 (512)
Q Consensus 417 ~~~~~Q~~GRagR~g~-~g~~~~~~~~~ 443 (512)
..+|+||+||+||.|+ +|.|++|+..+
T Consensus 284 ~~~y~Qr~GRaGR~g~~~g~~~~~~~~~ 311 (451)
T 2jlq_A 284 PASAAQRRGRIGRNPAQEDDQYVFSGDP 311 (451)
T ss_dssp HHHHHHHHTTSSCCTTCCCEEEEECSCC
T ss_pred HHHHHHhccccCCCCCCCccEEEEeCCc
Confidence 9999999999999998 78898887543
No 45
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=100.00 E-value=1.2e-40 Score=341.10 Aligned_cols=318 Identities=14% Similarity=0.130 Sum_probs=227.3
Q ss_pred Cccc-CCCCHHHHHHHHHhcCCCCCcHHHHHHHHHhhcCCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEE
Q 010357 19 SFSS-LGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFAL 97 (512)
Q Consensus 19 ~~~~-~~l~~~~~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~l 97 (512)
.|.. +++++.+.+.+.+ ....++|+|+.+++.+++++++++++|||||||++|++|+++.+.. .+.++|
T Consensus 150 ~~~~~l~~~~~~~~~l~~--~~~~~lpiq~~~i~~l~~g~dvlv~a~TGSGKT~~~~lpil~~l~~--------~~~~vL 219 (618)
T 2whx_A 150 YGNGVVTKSGDYVSAITQ--AERIGEPDYEVDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALK--------RRLRTL 219 (618)
T ss_dssp CCC---------CEECBC--CCCCCCCCCCCCGGGGSTTCEEEECCCTTSSTTTTHHHHHHHHHHH--------TTCCEE
T ss_pred cccccccchHHHHHHHhh--ccccCCCccccCHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHHHHh--------CCCeEE
Confidence 3444 5667666666632 2467889988889999999999999999999999999999988765 256799
Q ss_pred EEcCcHHHHHHHHHHHHHHHhhcCCcceEEEeCCCchHHHHHHHcCCCCEEEeCChHHHHHHhhcCCCcCCceeEEEEcc
Q 010357 98 VLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDE 177 (512)
Q Consensus 98 il~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lV~DE 177 (512)
|++||++|+.|+.+.+... .+.+ ...... .....+..+.++|.+.+...+... ..+.++++||+||
T Consensus 220 vl~PtreLa~Qi~~~l~~~-------~v~~-~~~~l~----~~~tp~~~i~~~t~~~l~~~l~~~--~~l~~~~~iViDE 285 (618)
T 2whx_A 220 ILAPTRVVAAEMEEALRGL-------PIRY-QTPAVK----SDHTGREIVDLMCHATFTTRLLSS--TRVPNYNLIVMDE 285 (618)
T ss_dssp EEESSHHHHHHHHHHTTTS-------CEEE-CCTTSS----CCCCSSSCEEEEEHHHHHHHHHHC--SSCCCCSEEEEES
T ss_pred EEcChHHHHHHHHHHhcCC-------ceeE-ecccce----eccCCCceEEEEChHHHHHHHhcc--ccccCCeEEEEEC
Confidence 9999999999999877621 2221 111100 011123457778888887666543 3356899999999
Q ss_pred hhHHHhcCchHHHHHHHHHhccCCCCCCCCCCcccccceeEEEEEEecchhhHHHHHhhcCCCeEEccCCCcCCCCcccc
Q 010357 178 ADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLPEDKSHV 257 (512)
Q Consensus 178 ah~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (512)
||++ +.++...+..+...++.. ..|++++|||++.....+.. .++..+.+...
T Consensus 286 ah~~-~~~~~~~~~~i~~~l~~~--------------~~q~il~SAT~~~~~~~~~~---~~~~~~~v~~~--------- 338 (618)
T 2whx_A 286 AHFT-DPCSVAARGYISTRVEMG--------------EAAAIFMTATPPGSTDPFPQ---SNSPIEDIERE--------- 338 (618)
T ss_dssp TTCC-SHHHHHHHHHHHHHHHHT--------------SCEEEEECSSCTTCCCSSCC---CSSCEEEEECC---------
T ss_pred CCCC-CccHHHHHHHHHHHhccc--------------CccEEEEECCCchhhhhhhc---cCCceeeeccc---------
Confidence 9997 556777787787776421 78999999999865432111 11111111100
Q ss_pred ccCCcccchhhhccCCCccccccccccccccceeeeEEEecCCchHHHHHHHHHhhhccccCceEEEEeecchhhhhHHH
Q 010357 258 RFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYS 337 (512)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~ 337 (512)
.+ ..+...+...+.+ .++++||||++++.++.+++
T Consensus 339 ---------------------------------------~~-~~~~~~ll~~l~~-----~~~~~LVF~~s~~~a~~l~~ 373 (618)
T 2whx_A 339 ---------------------------------------IP-ERSWNTGFDWITD-----YQGKTVWFVPSIKAGNDIAN 373 (618)
T ss_dssp ---------------------------------------CC-SSCCSSSCHHHHH-----CCSCEEEECSSHHHHHHHHH
T ss_pred ---------------------------------------CC-HHHHHHHHHHHHh-----CCCCEEEEECChhHHHHHHH
Confidence 00 0000111222322 25799999999999999999
Q ss_pred hhhhhcCCCCCCChhHHHhhhhccceeeecCCCCHHHHHHHHHhhhcCCCcEEEeecccccCCCCCCCcEE---------
Q 010357 338 LLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCI--------- 408 (512)
Q Consensus 338 ~l~~~~~~~~~~~~~~~~~~~~~~~v~~l~g~~~~~~r~~~~~~f~~~~~~vLvaT~~~~~Gldip~~~~V--------- 408 (512)
.|... +..+..+||+ +|.++++.|++|+.+|||||+++++|+|+| +++|
T Consensus 374 ~L~~~-----------------g~~v~~lhg~----~R~~~l~~F~~g~~~VLVaTdv~~rGiDi~-v~~VId~g~~~~P 431 (618)
T 2whx_A 374 CLRKS-----------------GKRVIQLSRK----TFDTEYPKTKLTDWDFVVTTDISEMGANFR-AGRVIDPRRCLKP 431 (618)
T ss_dssp HHHHT-----------------TCCEEEECTT----THHHHTTHHHHSCCSEEEECGGGGTTCCCC-CSEEEECCEEEEE
T ss_pred HHHHc-----------------CCcEEEEChH----HHHHHHHhhcCCCcEEEEECcHHHcCcccC-ceEEEECcceecc
Confidence 99987 7789999984 788899999999999999999999999997 8888
Q ss_pred -----------EEeCCCCChhHHHHhhhhcccCCC-CccEEEecC---ccchhHHHHHHHc
Q 010357 409 -----------IQYDSAGEATEYVHRVGRTARLGE-RGDSLLFLQ---PVEMDYLQDLEKH 454 (512)
Q Consensus 409 -----------I~~~~p~s~~~~~Q~~GRagR~g~-~g~~~~~~~---~~~~~~~~~l~~~ 454 (512)
|+++.|.+..+|+||+||+||.|. .|.+++|++ +.|...++.+++.
T Consensus 432 ~~~~~~~~~~~i~~d~P~s~~~yiQR~GRaGR~g~~~G~ai~l~~~~~~~d~~~l~~le~~ 492 (618)
T 2whx_A 432 VILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSGDPLKNDEDHAHWTEAK 492 (618)
T ss_dssp EEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSCCCCCCTTCHHHHHHH
T ss_pred eecccCCCceEEcccccCCHHHHHHhccccCCCCCCCCeEEEEccCCchhhHHHHHHHHhH
Confidence 777779999999999999999965 899999998 7777777777663
No 46
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=100.00 E-value=1.5e-39 Score=322.17 Aligned_cols=279 Identities=18% Similarity=0.189 Sum_probs=190.1
Q ss_pred HhhcCCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHHhhcCCcceEEEeCC
Q 010357 52 VILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGG 131 (512)
Q Consensus 52 ~~~~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~g 131 (512)
.+++|+++++++|||||||++|++|+++.+.. .+.+++|++||++|+.|+++.+..+ .+... .+
T Consensus 4 ~l~~g~~vlv~a~TGSGKT~~~l~~~l~~~~~--------~~~~~lil~Ptr~La~Q~~~~l~~~-------~v~~~-~~ 67 (440)
T 1yks_A 4 MLKKGMTTVLDFHPGAGKTRRFLPQILAECAR--------RRLRTLVLAPTRVVLSEMKEAFHGL-------DVKFH-TQ 67 (440)
T ss_dssp TTSTTCEEEECCCTTSSTTTTHHHHHHHHHHH--------TTCCEEEEESSHHHHHHHHHHTTTS-------CEEEE-SS
T ss_pred HhhCCCCEEEEcCCCCCHHHHHHHHHHHHHHh--------cCCeEEEEcchHHHHHHHHHHHhcC-------CeEEe-cc
Confidence 35689999999999999999999999987765 2567999999999999999887743 11211 11
Q ss_pred CchHHHHHHHcCCCCEEEeCChHHHHHHhhc-------CCCcCCceeEEEEcchhHHHhcCchHHHHHHHHHhccCCCCC
Q 010357 132 ENRSKEKARLRKGISILVATPGRLLDHLKHT-------SSFLHTNLRWIIFDEADRILELGFGKEIEEILDILGSRNIGS 204 (512)
Q Consensus 132 ~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~-------~~~~~~~~~~lV~DEah~l~~~~~~~~~~~i~~~~~~~~~~~ 204 (512)
.. -.++||+++.+.+... ....+.++++||+||+|++ +.++...+..+......
T Consensus 68 ~~-------------~~v~Tp~~l~~~l~~~~l~~~~~~~~~~~~l~~vViDEah~~-~~~~~~~~~~~~~~~~~----- 128 (440)
T 1yks_A 68 AF-------------SAHGSGREVIDAMCHATLTYRMLEPTRVVNWEVIIMDEAHFL-DPASIAARGWAAHRARA----- 128 (440)
T ss_dssp CC-------------CCCCCSSCCEEEEEHHHHHHHHTSSSCCCCCSEEEETTTTCC-SHHHHHHHHHHHHHHHT-----
T ss_pred cc-------------eeccCCccceeeecccchhHhhhCcccccCccEEEEECcccc-CcchHHHHHHHHHHhcc-----
Confidence 10 0367776654332211 1223678999999999997 33333333333333321
Q ss_pred CCCCCcccccceeEEEEEEecchhhHHHHHhhcCCCeEEccCCCcCCCCccccccCCcccchhhhccCCCcccccccccc
Q 010357 205 IGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLPEDKSHVRFGSLESDVKEEVEHPSTTMRSTTEDF 284 (512)
Q Consensus 205 ~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (512)
...+++++|||+++....+... ..+..
T Consensus 129 ---------~~~~~l~~SAT~~~~~~~~~~~--~~~~~------------------------------------------ 155 (440)
T 1yks_A 129 ---------NESATILMTATPPGTSDEFPHS--NGEIE------------------------------------------ 155 (440)
T ss_dssp ---------TSCEEEEECSSCTTCCCSSCCC--SSCEE------------------------------------------
T ss_pred ---------CCceEEEEeCCCCchhhhhhhc--CCCee------------------------------------------
Confidence 1789999999997653311110 00000
Q ss_pred ccccceeeeEEEecCCchHHHHHHHHHhhhccccCceEEEEeecchhhhhHHHhhhhhcCCCCCCChhHHHhhhhcccee
Q 010357 285 KLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTF 364 (512)
Q Consensus 285 ~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~v~ 364 (512)
.....++.... ..+...+.+ .++++||||++++.++.+++.|+.. +..+.
T Consensus 156 -------~~~~~~~~~~~-~~~~~~l~~-----~~~~~lVF~~s~~~a~~l~~~L~~~-----------------~~~v~ 205 (440)
T 1yks_A 156 -------DVQTDIPSEPW-NTGHDWILA-----DKRPTAWFLPSIRAANVMAASLRKA-----------------GKSVV 205 (440)
T ss_dssp -------EEECCCCSSCC-SSSCHHHHH-----CCSCEEEECSCHHHHHHHHHHHHHT-----------------TCCEE
T ss_pred -------EeeeccChHHH-HHHHHHHHh-----cCCCEEEEeCCHHHHHHHHHHHHHc-----------------CCCEE
Confidence 00000000000 111122222 2579999999999999999999887 77899
Q ss_pred eecCCCCHHHHHHHHHhhhcCCCcEEEeecccccCCCCCCCcEEEE-------------------eCCCCChhHHHHhhh
Q 010357 365 RLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQ-------------------YDSAGEATEYVHRVG 425 (512)
Q Consensus 365 ~l~g~~~~~~r~~~~~~f~~~~~~vLvaT~~~~~Gldip~~~~VI~-------------------~~~p~s~~~~~Q~~G 425 (512)
.+|| ++|..+++.|++|+.+|||||+++++|+|+| +++||+ ++.|.+..+|+||+|
T Consensus 206 ~lhg----~~R~~~~~~F~~g~~~vLVaT~v~e~GiDip-v~~VI~~g~~~~pv~~~~~~~~vi~~~~p~~~~~~~Qr~G 280 (440)
T 1yks_A 206 VLNR----KTFEREYPTIKQKKPDFILATDIAEMGANLC-VERVLDCRTAFKPVLVDEGRKVAIKGPLRISASSAAQRRG 280 (440)
T ss_dssp ECCS----SSCC--------CCCSEEEESSSTTCCTTCC-CSEEEECCEEEEEEEETTTTEEEEEEEEECCHHHHHHHHT
T ss_pred Eecc----hhHHHHHhhhcCCCceEEEECChhheeeccC-ceEEEeCCccceeeecccccceeeccccccCHHHHHHhcc
Confidence 9999 4788999999999999999999999999999 999986 888999999999999
Q ss_pred hcccC-CCCccEEEec---CccchhHHHHHHH
Q 010357 426 RTARL-GERGDSLLFL---QPVEMDYLQDLEK 453 (512)
Q Consensus 426 RagR~-g~~g~~~~~~---~~~~~~~~~~l~~ 453 (512)
|+||. |++|.|++|+ ++.+...++.++.
T Consensus 281 R~GR~g~~~g~~~~l~~~~~~~~~~~l~~l~~ 312 (440)
T 1yks_A 281 RIGRNPNRDGDSYYYSEPTSENNAHHVCWLEA 312 (440)
T ss_dssp TSSCCTTCCCEEEEECSCCCCCCTTBHHHHHH
T ss_pred ccCCCCCCCceEEEEeccCChhhhhhhhhhhH
Confidence 99997 6899999996 5677677777665
No 47
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=100.00 E-value=7.7e-39 Score=329.58 Aligned_cols=297 Identities=17% Similarity=0.191 Sum_probs=202.7
Q ss_pred CCcHHHH-----HHHHHhh------cCCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcHHHHHHH
Q 010357 41 APTKVQA-----QAIPVIL------SGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQV 109 (512)
Q Consensus 41 ~~~~~Q~-----~~~~~~~------~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~ 109 (512)
.|+++|+ ++++.++ +++++++++|||||||++|++++++.+.. .+.+++|++||++|+.|+
T Consensus 215 ~pt~IQ~~~r~~~aIp~~l~~~~l~~g~dvlv~apTGSGKTl~~ll~il~~l~~--------~~~~~lilaPTr~La~Q~ 286 (673)
T 2wv9_A 215 YVSAIVQGERVEEPVPEAYNPEMLKKRQLTVLDLHPGAGKTRRILPQIIKDAIQ--------KRLRTAVLAPTRVVAAEM 286 (673)
T ss_dssp EEEEEECC-------CCCCCGGGGSTTCEEEECCCTTTTTTTTHHHHHHHHHHH--------TTCCEEEEESSHHHHHHH
T ss_pred ccCceeeccccccchHHHhhHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHh--------CCCcEEEEccHHHHHHHH
Confidence 8999999 9999888 89999999999999999999999987655 256799999999999999
Q ss_pred HHHHHHHHhhcCCcceEEEeCCCchHHHHHHHcCCCCEEEeCChHHHHHHhhcCCCcCCceeEEEEcchhHHHhcCchHH
Q 010357 110 YEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKE 189 (512)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lV~DEah~l~~~~~~~~ 189 (512)
++.+..+ + +....+... .....+.-+-+.+.+.+...+... ..+.++++||+||||++ +..+...
T Consensus 287 ~~~l~~~----~---i~~~~~~l~-----~v~tp~~ll~~l~~~~l~~~l~~~--~~l~~l~lvViDEaH~~-~~~~~~~ 351 (673)
T 2wv9_A 287 AEALRGL----P---VRYLTPAVQ-----REHSGNEIVDVMCHATLTHRLMSP--LRVPNYNLFVMDEAHFT-DPASIAA 351 (673)
T ss_dssp HHHTTTS----C---CEECCC--------CCCCSCCCEEEEEHHHHHHHHHSS--SCCCCCSEEEEESTTCC-CHHHHHH
T ss_pred HHHHhcC----C---eeeeccccc-----ccCCHHHHHHHHHhhhhHHHHhcc--cccccceEEEEeCCccc-CccHHHH
Confidence 9887743 1 111111000 000011123333444443333321 34678999999999986 2112223
Q ss_pred HHHHHHHhccCCCCCCCCCCcccccceeEEEEEEecchhhHHHHHhhcCCCeEEccCCCcCCCCccccccCCcccchhhh
Q 010357 190 IEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLPEDKSHVRFGSLESDVKEE 269 (512)
Q Consensus 190 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (512)
+..+....+. ...++++||||+++.+..+... ..+.. .+
T Consensus 352 ~~~l~~~~~~--------------~~~~vl~~SAT~~~~i~~~~~~--~~~i~-~v------------------------ 390 (673)
T 2wv9_A 352 RGYIATRVEA--------------GEAAAIFMTATPPGTSDPFPDT--NSPVH-DV------------------------ 390 (673)
T ss_dssp HHHHHHHHHT--------------TSCEEEEECSSCTTCCCSSCCC--SSCEE-EE------------------------
T ss_pred HHHHHHhccc--------------cCCcEEEEcCCCChhhhhhccc--CCceE-EE------------------------
Confidence 3333333321 1789999999997542211110 00000 00
Q ss_pred ccCCCccccccccccccccceeeeEEEecCCchHHHHHHHHHhhhccccCceEEEEeecchhhhhHHHhhhhhcCCCCCC
Q 010357 270 VEHPSTTMRSTTEDFKLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQ 349 (512)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~ 349 (512)
.. ..+. .+...++..+.+ .++++||||++++.++.+++.|...
T Consensus 391 ---------------------~~---~~~~-~~~~~~l~~l~~-----~~~~~lVF~~s~~~~e~la~~L~~~------- 433 (673)
T 2wv9_A 391 ---------------------SS---EIPD-RAWSSGFEWITD-----YAGKTVWFVASVKMSNEIAQCLQRA------- 433 (673)
T ss_dssp ---------------------EC---CCCS-SCCSSCCHHHHS-----CCSCEEEECSSHHHHHHHHHHHHTT-------
T ss_pred ---------------------ee---ecCH-HHHHHHHHHHHh-----CCCCEEEEECCHHHHHHHHHHHHhC-------
Confidence 00 0000 000111122221 3679999999999999999999887
Q ss_pred ChhHHHhhhhccceeeecCCCCHHHHHHHHHhhhcCCCcEEEeecccccCCCCCCCcEEEE-------------------
Q 010357 350 PDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQ------------------- 410 (512)
Q Consensus 350 ~~~~~~~~~~~~~v~~l~g~~~~~~r~~~~~~f~~~~~~vLvaT~~~~~Gldip~~~~VI~------------------- 410 (512)
++.+..+||+ +|..+++.|++|+.+|||||+++++|+|+| +++||+
T Consensus 434 ----------g~~v~~lHg~----eR~~v~~~F~~g~~~VLVaTdv~e~GIDip-v~~VI~~g~~~~p~vi~da~~r~~l 498 (673)
T 2wv9_A 434 ----------GKRVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFG-ASRVIDCRKSVKPTILDEGEGRVIL 498 (673)
T ss_dssp ----------TCCEEEECSS----SHHHHGGGGGTCCCSEEEECGGGGTTCCCC-CSEEEECCEECCEEEECSTTCEEEE
T ss_pred ----------CCeEEEeChH----HHHHHHHHHHCCCceEEEECchhhcceeeC-CcEEEECCCcccceeeeccccccee
Confidence 7789999994 899999999999999999999999999999 999998
Q ss_pred -eCCCCChhHHHHhhhhcccC-CCCccEEEec---CccchhHHHHHHH
Q 010357 411 -YDSAGEATEYVHRVGRTARL-GERGDSLLFL---QPVEMDYLQDLEK 453 (512)
Q Consensus 411 -~~~p~s~~~~~Q~~GRagR~-g~~g~~~~~~---~~~~~~~~~~l~~ 453 (512)
++.|.+..+|+||+||+||. |+.|.|++|+ ++.+...++.++.
T Consensus 499 l~d~P~s~~~y~Qr~GRaGR~~g~~G~ai~l~~~~~~~d~~~l~~ie~ 546 (673)
T 2wv9_A 499 SVPSAITSASAAQRRGRVGRNPSQIGDEYHYGGGTSEDDTMLAHWTEA 546 (673)
T ss_dssp CCSEECCHHHHHHHHTTSSCCSSCCCEEEEECSCCCCCCTTBHHHHHH
T ss_pred cccCCCCHHHHHHHhhccCCCCCCCCEEEEEEecCChhHHHHHHHHHH
Confidence 56899999999999999999 7899999996 4666555555544
No 48
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=100.00 E-value=1.8e-37 Score=321.08 Aligned_cols=352 Identities=18% Similarity=0.189 Sum_probs=198.4
Q ss_pred CCcHHHHHHHHHhhc----C-CCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcHHHHHHHH-HHHH
Q 010357 41 APTKVQAQAIPVILS----G-RHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVY-EILH 114 (512)
Q Consensus 41 ~~~~~Q~~~~~~~~~----~-~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~-~~~~ 114 (512)
.||++|.++++.+++ + +++++++|||||||++++..+...+...........+.++||++|+++|+.|+. +.+.
T Consensus 178 ~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~~~~~~l~~~~~~~~~~~~~~~vlil~P~~~L~~Q~~~~~~~ 257 (590)
T 3h1t_A 178 SPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAFQISWKLWSARWNRTGDYRKPRILFLADRNVLVDDPKDKTFT 257 (590)
T ss_dssp -CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHHHHTTCCSSCSSSCCCEEEEEC-----------CCT
T ss_pred CchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHHHHHHHHHhcccccccccCCCeEEEEeCCHHHHHHHHHHHHH
Confidence 599999999998875 4 568999999999999987776666554322212224678999999999999999 6666
Q ss_pred HHHhhcCCcceEEEeCCCchHHHHHHHcCCCCEEEeCChHHHHHHhhc---CCCcCCceeEEEEcchhHHHhcCchHHHH
Q 010357 115 KLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHT---SSFLHTNLRWIIFDEADRILELGFGKEIE 191 (512)
Q Consensus 115 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~---~~~~~~~~~~lV~DEah~l~~~~~~~~~~ 191 (512)
.+.. ....+.++ ......+|+|+||++|....... ..+....+++||+||||++.... ...+.
T Consensus 258 ~~~~-----~~~~~~~~--------~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~lvIiDEaH~~~~~~-~~~~~ 323 (590)
T 3h1t_A 258 PFGD-----ARHKIEGG--------KVVKSREIYFAIYQSIASDERRPGLYKEFPQDFFDLIIIDECHRGSARD-NSNWR 323 (590)
T ss_dssp TTCS-----SEEECCC----------CCSSCSEEEEEGGGC------CCGGGGSCTTSCSEEEESCCC----------CH
T ss_pred hcch-----hhhhhhcc--------CCCCCCcEEEEEhhhhccccccccccccCCCCccCEEEEECCccccccc-hHHHH
Confidence 5432 12222221 13356799999999998865421 23445678999999999986542 24556
Q ss_pred HHHHHhccCCCCCCCCCCcccccceeEEEEEEecchhhHHHHHhhcCCCeEE-ccCC----CcCCCCccccccCCcccch
Q 010357 192 EILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLI-GLDE----KKLPEDKSHVRFGSLESDV 266 (512)
Q Consensus 192 ~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~ 266 (512)
.++..++ ..+++++|||+......-....+..+... .... ..+... .........
T Consensus 324 ~il~~~~----------------~~~~l~lTATP~~~~~~~~~~~f~~~~~~~~~~~~i~~~~l~~~----~~~~~~~~~ 383 (590)
T 3h1t_A 324 EILEYFE----------------PAFQIGMTATPLREDNRDTYRYFGNPIYTYSLRQGIDDGFLAPY----RVHRVISEV 383 (590)
T ss_dssp HHHHHST----------------TSEEEEEESSCSCTTTHHHHHHSCSCSEEECHHHHHHHTSSCCE----EEEEEEETT
T ss_pred HHHHhCC----------------cceEEEeccccccccchhHHHHcCCceEecCHHHHhhCCccCCc----EEEEeeeee
Confidence 6666664 46799999998754433333333333221 1000 000000 000000000
Q ss_pred hhhccCCCccccccccccccccceeeeEEEec-------CCchHHHHHHHHHhhhcc-ccCceEEEEeecchhhhhHHHh
Q 010357 267 KEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVP-------CGSRLAVLLSILKHLFDT-EVSQKLVVFFSTCDAVDFHYSL 338 (512)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~k~~~l~~~l~~~~~~-~~~~~~lvf~~~~~~~~~l~~~ 338 (512)
......... .... .....+........ ...+...+.+.+..++.. .+++++||||+++..++.+++.
T Consensus 384 ~~~~~~~~~---~~~~--~~~~~~~~~~~~~~~~~~~~~~~~r~~~i~~~l~~~l~~~~~~~k~lVF~~~~~~a~~l~~~ 458 (590)
T 3h1t_A 384 DAAGWRPSK---GDVD--RFGREIPDGEYQTKDFERVIALKARTDAFAKHLTDFMKRTDRFAKTIVFCVDQEHADEMRRA 458 (590)
T ss_dssp CC----------------------------CCSHHHHHHHHHTHHHHHHHHHHHHHHHCTTSEEEEEESSHHHHHHHHHH
T ss_pred ecccccccc---cccc--ccccccccccCCHHHhhhHhcChHHHHHHHHHHHHHHHhcCCCccEEEEECCHHHHHHHHHH
Confidence 000000000 0000 00000000000000 012333444444433322 3457999999999999999999
Q ss_pred hhhhcCCCCCCChhHHHhhhhccceeeecCCCCHHHHHHHHHhhhcCCCc---EEEeecccccCCCCCCCcEEEEeCCCC
Q 010357 339 LSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKA---LLLSTDVAARGLDFPKVKCIIQYDSAG 415 (512)
Q Consensus 339 l~~~~~~~~~~~~~~~~~~~~~~~v~~l~g~~~~~~r~~~~~~f~~~~~~---vLvaT~~~~~Gldip~~~~VI~~~~p~ 415 (512)
|.+...... . .....+..+||+++. +|+.++++|++|+.+ |||||+++++|+|+|++++||++++|.
T Consensus 459 L~~~~~~~~--------~-~~~~~~~~i~g~~~~-~r~~~l~~F~~~~~~~~~ilvtt~~l~~GiDip~v~~Vi~~~~~~ 528 (590)
T 3h1t_A 459 LNNLNSDLS--------R-KHPDYVARVTSEEGK-IGKGHLSRFQELETSTPVILTTSQLLTTGVDAPTCKNVVLARVVN 528 (590)
T ss_dssp HHHHTHHHH--------T-TCTTSEEECSSTTHH-HHHHHHHHHHCTTCCCCCEEEESSTTTTTCCCTTEEEEEEESCCC
T ss_pred HHHhhhhhh--------c-cCCCeEEEEeCCChH-HHHHHHHHHhCCCCCCCEEEEECChhhcCccchheeEEEEEecCC
Confidence 987632100 0 002236778999753 799999999998766 889999999999999999999999999
Q ss_pred ChhHHHHhhhhcccCCC--CccEEEecC
Q 010357 416 EATEYVHRVGRTARLGE--RGDSLLFLQ 441 (512)
Q Consensus 416 s~~~~~Q~~GRagR~g~--~g~~~~~~~ 441 (512)
|+..|+||+||+||.+. .+..+++++
T Consensus 529 s~~~~~Q~iGR~~R~~~~~~k~~~~I~D 556 (590)
T 3h1t_A 529 SMSEFKQIVGRGTRLREDYGKLWFNIID 556 (590)
T ss_dssp CHHHHHHHHTTSCCCBGGGTBSCEEEEE
T ss_pred ChHHHHHHHhhhcccCccCCCCEEEEEe
Confidence 99999999999999875 344444444
No 49
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=100.00 E-value=6.7e-38 Score=317.19 Aligned_cols=279 Identities=20% Similarity=0.218 Sum_probs=205.6
Q ss_pred CcHHHHHHHHHhhcCCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHHhhcC
Q 010357 42 PTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFH 121 (512)
Q Consensus 42 ~~~~Q~~~~~~~~~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~ 121 (512)
++++|+++++.+.++++++++||||||||.++.+++++. +.+++|++|||+|+.|+++.+.....
T Consensus 218 ~~~~q~~i~~~L~~~~~vlv~ApTGSGKT~a~~l~ll~~------------g~~vLVl~PTReLA~Qia~~l~~~~g--- 282 (666)
T 3o8b_A 218 VFTDNSSPPAVPQSFQVAHLHAPTGSGKSTKVPAAYAAQ------------GYKVLVLNPSVAATLGFGAYMSKAHG--- 282 (666)
T ss_dssp SCCCCCSCCCCCSSCEEEEEECCTTSCTTTHHHHHHHHT------------TCCEEEEESCHHHHHHHHHHHHHHHS---
T ss_pred cHHHHHHHHHHHHcCCeEEEEeCCchhHHHHHHHHHHHC------------CCeEEEEcchHHHHHHHHHHHHHHhC---
Confidence 667777777777788899999999999999999988762 55799999999999999987766543
Q ss_pred CcceEEEeCCCchHHHHHHHcCCCCEEEeCChHHHHHHhhcCCCcCCceeEEEEcchhHHHhcCchHHHHHHHHHhccCC
Q 010357 122 WIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILGSRN 201 (512)
Q Consensus 122 ~~~~~~~~~g~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lV~DEah~l~~~~~~~~~~~i~~~~~~~~ 201 (512)
..++...++.. ...+.+|+|+||++|+ . ...+.+.++++||+||||. .+.++...+..++..++...
T Consensus 283 -~~vg~~vG~~~-------~~~~~~IlV~TPGrLl---~-~~~l~l~~l~~lVlDEAH~-l~~~~~~~l~~Il~~l~~~~ 349 (666)
T 3o8b_A 283 -IDPNIRTGVRT-------ITTGAPVTYSTYGKFL---A-DGGCSGGAYDIIICDECHS-TDSTTILGIGTVLDQAETAG 349 (666)
T ss_dssp -CCCEEECSSCE-------ECCCCSEEEEEHHHHH---H-TTSCCTTSCSEEEETTTTC-CSHHHHHHHHHHHHHTTTTT
T ss_pred -CCeeEEECcEe-------ccCCCCEEEECcHHHH---h-CCCcccCcccEEEEccchh-cCccHHHHHHHHHHhhhhcC
Confidence 23455555543 3566899999999983 2 2556677899999999975 45557777888888876521
Q ss_pred CCCCCCCCcccccceeEEEEEEecchhhHHHHHhhcCCCeEEccCCCcCCCCccccccCCcccchhhhccCCCccccccc
Q 010357 202 IGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLPEDKSHVRFGSLESDVKEEVEHPSTTMRSTT 281 (512)
Q Consensus 202 ~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (512)
...++++|||+++.+. ...+....+...
T Consensus 350 -------------~~llil~SAT~~~~i~------~~~p~i~~v~~~--------------------------------- 377 (666)
T 3o8b_A 350 -------------ARLVVLATATPPGSVT------VPHPNIEEVALS--------------------------------- 377 (666)
T ss_dssp -------------CSEEEEEESSCTTCCC------CCCTTEEEEECB---------------------------------
T ss_pred -------------CceEEEECCCCCcccc------cCCcceEEEeec---------------------------------
Confidence 3347888999886311 000000000000
Q ss_pred cccccccceeeeEEEecCCchHHHHHHHHHhhhccccCceEEEEeecchhhhhHHHhhhhhcCCCCCCChhHHHhhhhcc
Q 010357 282 EDFKLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRC 361 (512)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 361 (512)
....+ .. . ..+.. .....++++||||++++.++.+++.|.+. ++
T Consensus 378 ----~~~~i-~~---~--~~~~~---------l~~~~~~~vLVFv~Tr~~ae~la~~L~~~-----------------g~ 421 (666)
T 3o8b_A 378 ----NTGEI-PF---Y--GKAIP---------IEAIRGGRHLIFCHSKKKCDELAAKLSGL-----------------GI 421 (666)
T ss_dssp ----SCSSE-EE---T--TEEEC---------GGGSSSSEEEEECSCHHHHHHHHHHHHTT-----------------TC
T ss_pred ----ccchh-HH---H--Hhhhh---------hhhccCCcEEEEeCCHHHHHHHHHHHHhC-----------------CC
Confidence 00000 00 0 00000 01224689999999999999999999987 78
Q ss_pred ceeeecCCCCHHHHHHHHHhhhcCCCcEEEeecccccCCCCCCCcEEE----------EeC-----------CCCChhHH
Q 010357 362 KTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCII----------QYD-----------SAGEATEY 420 (512)
Q Consensus 362 ~v~~l~g~~~~~~r~~~~~~f~~~~~~vLvaT~~~~~Gldip~~~~VI----------~~~-----------~p~s~~~~ 420 (512)
.+..+||+|++++ |.++..+|||||+++++|||+| +++|| +|| .|.+..+|
T Consensus 422 ~v~~lHG~l~q~e-------r~~~~~~VLVATdVaerGIDId-V~~VI~~Gl~~~~ViNyDydP~~gl~~~~~P~s~~sy 493 (666)
T 3o8b_A 422 NAVAYYRGLDVSV-------IPTIGDVVVVATDALMTGYTGD-FDSVIDCNTCVTQTVDFSLDPTFTIETTTVPQDAVSR 493 (666)
T ss_dssp CEEEECTTSCGGG-------SCSSSCEEEEECTTHHHHCCCC-BSEEEECCEEEEEEEECCCSSSCEEEEEEEECBHHHH
T ss_pred cEEEecCCCCHHH-------HHhCCCcEEEECChHHccCCCC-CcEEEecCcccccccccccccccccccccCcCCHHHH
Confidence 8999999999875 4456669999999999999997 99988 566 89999999
Q ss_pred HHhhhhcccCCCCccEEEecCccchh
Q 010357 421 VHRVGRTARLGERGDSLLFLQPVEMD 446 (512)
Q Consensus 421 ~Q~~GRagR~g~~g~~~~~~~~~~~~ 446 (512)
+||+||+|| |++|. +.|+++.+..
T Consensus 494 iQRiGRtGR-g~~G~-i~lvt~~e~~ 517 (666)
T 3o8b_A 494 SQRRGRTGR-GRRGI-YRFVTPGERP 517 (666)
T ss_dssp HHHHTTBCS-SSCEE-EEESCCCCBC
T ss_pred HHHhccCCC-CCCCE-EEEEecchhh
Confidence 999999999 89999 9999887643
No 50
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=100.00 E-value=3.7e-38 Score=314.28 Aligned_cols=272 Identities=18% Similarity=0.209 Sum_probs=189.9
Q ss_pred HHhhcCCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHHhhcCCcceEEEeC
Q 010357 51 PVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMG 130 (512)
Q Consensus 51 ~~~~~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~ 130 (512)
..+.+++++++++|||||||++|++|+++.+.. .+.++||++||++|+.|+++.+... .+....+
T Consensus 16 ~~l~~~~~vlv~a~TGsGKT~~~~l~il~~~~~--------~~~~~lvl~Ptr~La~Q~~~~l~g~-------~v~~~~~ 80 (459)
T 2z83_A 16 NMLRKRQMTVLDLHPGSGKTRKILPQIIKDAIQ--------QRLRTAVLAPTRVVAAEMAEALRGL-------PVRYQTS 80 (459)
T ss_dssp GGGSTTCEEEECCCTTSCTTTTHHHHHHHHHHH--------TTCCEEEEECSHHHHHHHHHHTTTS-------CEEECC-
T ss_pred HHHhcCCcEEEECCCCCCHHHHHHHHHHHHHHh--------CCCcEEEECchHHHHHHHHHHhcCc-------eEeEEec
Confidence 345678899999999999999999999987764 2567999999999999999887621 1111111
Q ss_pred CCchHHHHHHHcCCCCEEEeCChHHHHHHhhcCCCcCCceeEEEEcchhH-----HHhcCchHHHHHHHHHhccCCCCCC
Q 010357 131 GENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADR-----ILELGFGKEIEEILDILGSRNIGSI 205 (512)
Q Consensus 131 g~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lV~DEah~-----l~~~~~~~~~~~i~~~~~~~~~~~~ 205 (512)
.... .-..+..+.++|.+.+...+... ..+.++++||+||||+ +...++. ......
T Consensus 81 ~~~~-----~~t~~~~i~~~~~~~l~~~l~~~--~~l~~~~~iViDEaH~~~~~~~~~~~~~------~~~~~~------ 141 (459)
T 2z83_A 81 AVQR-----EHQGNEIVDVMCHATLTHRLMSP--NRVPNYNLFVMDEAHFTDPASIAARGYI------ATKVEL------ 141 (459)
T ss_dssp ------------CCCSEEEEEHHHHHHHHHSC--C-CCCCSEEEESSTTCCSHHHHHHHHHH------HHHHHT------
T ss_pred cccc-----CCCCCcEEEEEchHHHHHHhhcc--ccccCCcEEEEECCccCCchhhHHHHHH------HHHhcc------
Confidence 1110 11233457788888887666543 3456899999999997 3332221 111111
Q ss_pred CCCCcccccceeEEEEEEecchhhHHHHHhhcCCCeEEccCCCcCCCCccccccCCcccchhhhccCCCccccccccccc
Q 010357 206 GEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLPEDKSHVRFGSLESDVKEEVEHPSTTMRSTTEDFK 285 (512)
Q Consensus 206 ~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (512)
...+++++|||++.....+... ..|.... .. .
T Consensus 142 --------~~~~~il~SAT~~~~~~~~~~~--~~pi~~~-~~-------------------------------------~ 173 (459)
T 2z83_A 142 --------GEAAAIFMTATPPGTTDPFPDS--NAPIHDL-QD-------------------------------------E 173 (459)
T ss_dssp --------TSCEEEEECSSCTTCCCSSCCC--SSCEEEE-EC-------------------------------------C
T ss_pred --------CCccEEEEEcCCCcchhhhccC--CCCeEEe-cc-------------------------------------c
Confidence 1789999999997643211110 1111100 00 0
Q ss_pred cccceeeeEEEecCCchHHHHHHHHHhhhccccCceEEEEeecchhhhhHHHhhhhhcCCCCCCChhHHHhhhhccceee
Q 010357 286 LPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFR 365 (512)
Q Consensus 286 ~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~ 365 (512)
.+ ..+...+...+.+ .++++||||++++.++.+++.|... ++.+..
T Consensus 174 ~~------------~~~~~~~~~~l~~-----~~~~~LVF~~s~~~~~~l~~~L~~~-----------------g~~v~~ 219 (459)
T 2z83_A 174 IP------------DRAWSSGYEWITE-----YAGKTVWFVASVKMGNEIAMCLQRA-----------------GKKVIQ 219 (459)
T ss_dssp CC------------SSCCSSCCHHHHH-----CCSCEEEECSCHHHHHHHHHHHHHT-----------------TCCEEE
T ss_pred CC------------cchhHHHHHHHHh-----cCCCEEEEeCChHHHHHHHHHHHhc-----------------CCcEEe
Confidence 00 0000011122332 2579999999999999999999887 778999
Q ss_pred ecCCCCHHHHHHHHHhhhcCCCcEEEeecccccCCCCCCCcEEEE--------------------eCCCCChhHHHHhhh
Q 010357 366 LHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQ--------------------YDSAGEATEYVHRVG 425 (512)
Q Consensus 366 l~g~~~~~~r~~~~~~f~~~~~~vLvaT~~~~~Gldip~~~~VI~--------------------~~~p~s~~~~~Q~~G 425 (512)
+||+ +|..+++.|++|+.+|||||+++++|+|+|+ ++||+ |+.|.|..+|+||+|
T Consensus 220 lh~~----~R~~~~~~f~~g~~~iLVaT~v~~~GiDip~-~~VI~~G~~~~~~~~~~~~~~~~~~~d~p~s~~~~~QR~G 294 (459)
T 2z83_A 220 LNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFGA-SRVIDCRKSVKPTILEEGEGRVILGNPSPITSASAAQRRG 294 (459)
T ss_dssp ESTT----CCCCCGGGSSSCCCSEEEESSCC---CCCSC-SEEEECCEECCEEEECSSSCEEEECSCEECCHHHHHHHHT
T ss_pred cCHH----HHHHHHhhccCCCceEEEECChHHhCeecCC-CEEEECCcccccccccccccccccccCCCCCHHHHHHhcc
Confidence 9985 7889999999999999999999999999999 99999 679999999999999
Q ss_pred hcccCCC-CccEEEecCcc
Q 010357 426 RTARLGE-RGDSLLFLQPV 443 (512)
Q Consensus 426 RagR~g~-~g~~~~~~~~~ 443 (512)
|+||.|+ +|.+++|+.+.
T Consensus 295 RaGR~g~~~G~~~~~~~~~ 313 (459)
T 2z83_A 295 RVGRNPNQVGDEYHYGGAT 313 (459)
T ss_dssp TSSCCTTCCCEEEEECSCC
T ss_pred ccCCCCCCCCeEEEEEccc
Confidence 9999997 89999999875
No 51
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=100.00 E-value=6.8e-36 Score=322.08 Aligned_cols=371 Identities=15% Similarity=0.148 Sum_probs=229.8
Q ss_pred CCcHHHHHHHHHhhc--CCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHHh
Q 010357 41 APTKVQAQAIPVILS--GRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLH 118 (512)
Q Consensus 41 ~~~~~Q~~~~~~~~~--~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~ 118 (512)
+|+|||.+++..++. +.+++++++||+|||++++..+...+.. +...++|||||+ +|+.||.+++...+.
T Consensus 153 ~LrpyQ~eav~~~l~~~~~~~LLad~tGlGKTi~Ai~~i~~l~~~-------g~~~rvLIVvP~-sLl~Qw~~E~~~~f~ 224 (968)
T 3dmq_A 153 SLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLS-------GAAERVLIIVPE-TLQHQWLVEMLRRFN 224 (968)
T ss_dssp CCCHHHHHHHHHHHHSSSCEEEECCCTTSCHHHHHHHHHHHHHHT-------SSCCCEEEECCT-TTHHHHHHHHHHHSC
T ss_pred CCcHHHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHHh-------CCCCeEEEEeCH-HHHHHHHHHHHHHhC
Confidence 599999999988875 3478999999999999999888877755 234579999999 999999999977652
Q ss_pred hcCCcceEEEeCCCchHHHHHH---HcCCCCEEEeCChHHHHHHhhcCCCcCCceeEEEEcchhHHHhcCch-HHHHHHH
Q 010357 119 RFHWIVPGYVMGGENRSKEKAR---LRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFG-KEIEEIL 194 (512)
Q Consensus 119 ~~~~~~~~~~~~g~~~~~~~~~---~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lV~DEah~l~~~~~~-~~~~~i~ 194 (512)
..+..+ .+......... .....+|+|+|++.+.........+...++++||+||||++...+.. ......+
T Consensus 225 ----l~v~v~-~~~~~~~~~~~~~~~~~~~dIvI~T~~~L~~~~~~~~~l~~~~~dlVIvDEAH~~kn~~~~~s~~~~~l 299 (968)
T 3dmq_A 225 ----LRFALF-DDERYAEAQHDAYNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHHLVWSEDAPSREYQAI 299 (968)
T ss_dssp ----CCCEEC-CHHHHHHHHHTTCSSSTTCSEEEECHHHHHTSTTTTHHHHTSCCCEEEECCSSCCCCBTTBCCHHHHHH
T ss_pred ----CCEEEE-ccchhhhhhhhcccccccCCEEEEcHHHHhhCHHHHHHhhhcCCCEEEehhhHhhcCCCCcchHHHHHH
Confidence 222333 22222221111 12246899999999865322212233447899999999998654322 1122233
Q ss_pred HHhccCCCCCCCCCCcccccceeEEEEEEecch-hhH---HHHHhhcCCCeEEcc----------------------CC-
Q 010357 195 DILGSRNIGSIGEGNEVSNVKRQNLLLSATLNE-KVN---HLAKISLETPVLIGL----------------------DE- 247 (512)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~-~~~---~~~~~~~~~~~~~~~----------------------~~- 247 (512)
..+... ..+++++||||.+ ... ...... .+..+.. ..
T Consensus 300 ~~L~~~--------------~~~~L~LTATPi~n~~~el~sll~~L--~p~~~~~~~~f~~~~~~~~~i~~~~~~l~~~~ 363 (968)
T 3dmq_A 300 EQLAEH--------------VPGVLLLTATPEQLGMESHFARLRLL--DPNRFHDFAQFVEEQKNYCPVADAVAMLLAGN 363 (968)
T ss_dssp HHHHTT--------------CSSEEESCSSCSSSCSSCTHHHHHHH--CTTTCSSTHHHHHHHHHHHHHHHHHHTTTTSC
T ss_pred HHHhhc--------------CCcEEEEEcCCccCCHHHHHHHHHhc--CccccCCHHHHHHHHHhHHHHHHHHHHHhccC
Confidence 333211 5578999999843 111 111110 0000000 00
Q ss_pred -------CcCCCCccccccCCcccchh--------------hhcc-----CCCccccccccccccccceee---------
Q 010357 248 -------KKLPEDKSHVRFGSLESDVK--------------EEVE-----HPSTTMRSTTEDFKLPAQLVQ--------- 292 (512)
Q Consensus 248 -------~~~~~~~~~~~~~~~~~~~~--------------~~~~-----~~~~~~~~~~~~~~~~~~~~~--------- 292 (512)
..+........+..+..... .... ...............+.....
T Consensus 364 ~~~~~~~~~L~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~i~~lld~~g~~~~l~r~~r~~i~~~p~r~~~~~~l~~~~~ 443 (968)
T 3dmq_A 364 KLSNDELNMLGEMIGEQDIEPLLQAANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIKLPLPTQ 443 (968)
T ss_dssp CCCGGGTTSSTTTTCTTCSSTTGGGTCCCSSCSTTTHHHHHHHHGGGCTTTTTEECCCTTTCCCCCCCCCCEEEECCCHH
T ss_pred CCCHHHHHHHHHHhcchhhHHHHhcccchhhhhHHHHHHHHHHHHHhhCcchhhhhhhhhhhcccChhheEeeecCCCHH
Confidence 00000000000000000000 0000 000000000000000000000
Q ss_pred -------------------------------------eEEEecCCchHHHHHHHHHhhhccccCceEEEEeecchhhhhH
Q 010357 293 -------------------------------------RYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFH 335 (512)
Q Consensus 293 -------------------------------------~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~lvf~~~~~~~~~l 335 (512)
.........|...+..++.. ..+.++||||+++..++.+
T Consensus 444 ~~~~~~~~~~~~~~~~~~~~~~~~l~pe~~~~~l~~~~~~~~~~~~K~~~L~~ll~~----~~~~k~iVF~~~~~~~~~l 519 (968)
T 3dmq_A 444 YQTAIKVSGIMGARKSAEDRARDMLYPERIYQEFEGDNATWWNFDPRVEWLMGYLTS----HRSQKVLVICAKAATALQL 519 (968)
T ss_dssp HHHHHHHHHHTTCCSSGGGGTHHHHCSGGGTTTTTSSSCCTTTTSHHHHHHHHHHHH----TSSSCCCEECSSTHHHHHH
T ss_pred HHHHHHHHhhhhhhhhhHHHHhhhcChHHHHHHhhhhhhcccCccHHHHHHHHHHHh----CCCCCEEEEeCcHHHHHHH
Confidence 00112334577777777765 4578999999999999999
Q ss_pred HHhhhhhcCCCCCCChhHHHhhhhccceeeecCCCCHHHHHHHHHhhhcCC--CcEEEeecccccCCCCCCCcEEEEeCC
Q 010357 336 YSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEK--KALLLSTDVAARGLDFPKVKCIIQYDS 413 (512)
Q Consensus 336 ~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~l~g~~~~~~r~~~~~~f~~~~--~~vLvaT~~~~~Gldip~~~~VI~~~~ 413 (512)
+..|.... ++++..+||+|+..+|..+++.|++|+ .+|||||+++++|+|+|++++||++++
T Consensus 520 ~~~L~~~~----------------g~~~~~lhG~~~~~~R~~~l~~F~~g~~~~~vLvaT~v~~~GlDl~~~~~VI~~d~ 583 (968)
T 3dmq_A 520 EQVLRERE----------------GIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDL 583 (968)
T ss_dssp HHHHHTTT----------------CCCEEEECTTSCTTHHHHHHHHHHSTTSSCEEEECSCCTTCSSCCTTCCEEECSSC
T ss_pred HHHHHHHc----------------CCcEEEEeCCCCHHHHHHHHHHHhCCCCcccEEEecchhhcCCCcccCcEEEEecC
Confidence 99998521 778999999999999999999999998 999999999999999999999999999
Q ss_pred CCChhHHHHhhhhcccCCCCccEEEecCc--c-chhHHHHHHHcCCCCCc
Q 010357 414 AGEATEYVHRVGRTARLGERGDSLLFLQP--V-EMDYLQDLEKHGVSLTE 460 (512)
Q Consensus 414 p~s~~~~~Q~~GRagR~g~~g~~~~~~~~--~-~~~~~~~l~~~~~~~~~ 460 (512)
|+++..|.||+||+||.|+.|.++++... . -.+.+......++.+.+
T Consensus 584 p~~~~~~~Q~~GR~~R~Gq~~~v~v~~~~~~~t~ee~i~~~~~~k~~~~~ 633 (968)
T 3dmq_A 584 PFNPDLLEQRIGRLDRIGQAHDIQIHVPYLEKTAQSVLVRWYHEGLDAFE 633 (968)
T ss_dssp CSSHHHHHHHHHTTSCSSSCSCCEEEEEEETTSHHHHHHHHHHHTTCCSS
T ss_pred CCCHHHHHHHhhccccCCCCceEEEEEecCCChHHHHHHHHHHhCCCcee
Confidence 99999999999999999999976666432 2 23444444444444433
No 52
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=100.00 E-value=9.8e-36 Score=294.37 Aligned_cols=270 Identities=16% Similarity=0.155 Sum_probs=183.9
Q ss_pred cCCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHHhhcCCcceEEEeCCCch
Q 010357 55 SGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENR 134 (512)
Q Consensus 55 ~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~g~~~ 134 (512)
+|+++++++|||||||++|++++++.+.. .+.+++|++||++|+.|+++.+.. ..+....++...
T Consensus 1 kg~~~lv~a~TGsGKT~~~l~~~l~~~~~--------~g~~~lvl~Pt~~La~Q~~~~~~~-------~~v~~~~~~~~~ 65 (431)
T 2v6i_A 1 KRELTVLDLHPGAGKTRRVLPQLVREAVK--------KRLRTVILAPTRVVASEMYEALRG-------EPIRYMTPAVQS 65 (431)
T ss_dssp -CCEEEEECCTTSCTTTTHHHHHHHHHHH--------TTCCEEEEESSHHHHHHHHHHTTT-------SCEEEC------
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHh--------CCCCEEEECcHHHHHHHHHHHhCC-------CeEEEEecCccc
Confidence 36899999999999999999999865544 256799999999999999877651 233333332111
Q ss_pred HHHHHHHcCCCCEEEeCChHHHHHHhhcCCCcCCceeEEEEcchhHHHhcCchHHHHHHHHHhccCCCCCCCCCCccccc
Q 010357 135 SKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNV 214 (512)
Q Consensus 135 ~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lV~DEah~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 214 (512)
....+..+.+.|.+.+...+.. ...+.++++||+||+|++ +..+......+...... .
T Consensus 66 -----~~~~~~~~~~~~~~~l~~~l~~--~~~~~~l~~vViDEaH~~-~~~~~~~~~~l~~~~~~--------------~ 123 (431)
T 2v6i_A 66 -----ERTGNEIVDFMCHSTFTMKLLQ--GVRVPNYNLYIMDEAHFL-DPASVAARGYIETRVSM--------------G 123 (431)
T ss_dssp --------CCCSEEEEEHHHHHHHHHH--TCCCCCCSEEEEESTTCC-SHHHHHHHHHHHHHHHT--------------T
T ss_pred -----cCCCCceEEEEchHHHHHHHhc--CccccCCCEEEEeCCccC-CccHHHHHHHHHHHhhC--------------C
Confidence 1122345777888888766655 233568999999999985 32223333333333211 1
Q ss_pred ceeEEEEEEecchhhHHHHHhhcCCCeEEccCCCcCCCCccccccCCcccchhhhccCCCccccccccccccccceeeeE
Q 010357 215 KRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLPEDKSHVRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRY 294 (512)
Q Consensus 215 ~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (512)
..+++++|||+++....+... ..+.. .. ..
T Consensus 124 ~~~~l~~SAT~~~~~~~~~~~--~~~i~---------------~~-------------------------------~~-- 153 (431)
T 2v6i_A 124 DAGAIFMTATPPGTTEAFPPS--NSPII---------------DE-------------------------------ET-- 153 (431)
T ss_dssp SCEEEEEESSCTTCCCSSCCC--SSCCE---------------EE-------------------------------EC--
T ss_pred CCcEEEEeCCCCcchhhhcCC--CCcee---------------ec-------------------------------cc--
Confidence 789999999998632111000 00000 00 00
Q ss_pred EEecCCchHHHHHHHHHhhhccccCceEEEEeecchhhhhHHHhhhhhcCCCCCCChhHHHhhhhccceeeecCCCCHHH
Q 010357 295 VKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQED 374 (512)
Q Consensus 295 ~~~~~~~k~~~l~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~l~g~~~~~~ 374 (512)
.. ...+...+...+.+ .++++||||++++.++.+++.|+.. +..+..+||+ +
T Consensus 154 -~~-~~~~~~~~~~~l~~-----~~~~~lVF~~~~~~~~~l~~~L~~~-----------------~~~v~~lhg~----~ 205 (431)
T 2v6i_A 154 -RI-PDKAWNSGYEWITE-----FDGRTVWFVHSIKQGAEIGTCLQKA-----------------GKKVLYLNRK----T 205 (431)
T ss_dssp -CC-CSSCCSSCCHHHHS-----CSSCEEEECSSHHHHHHHHHHHHHT-----------------TCCEEEESTT----T
T ss_pred -cC-CHHHHHHHHHHHHc-----CCCCEEEEeCCHHHHHHHHHHHHHc-----------------CCeEEEeCCc----c
Confidence 00 00111112233332 2578999999999999999999887 7789999997 6
Q ss_pred HHHHHHhhhcCCCcEEEeecccccCCCCCCCcE-----------------EEEeCCCCChhHHHHhhhhcccCCCCc-cE
Q 010357 375 RRTTFGAFKTEKKALLLSTDVAARGLDFPKVKC-----------------IIQYDSAGEATEYVHRVGRTARLGERG-DS 436 (512)
Q Consensus 375 r~~~~~~f~~~~~~vLvaT~~~~~Gldip~~~~-----------------VI~~~~p~s~~~~~Q~~GRagR~g~~g-~~ 436 (512)
|+.+++.|++|+.+|||||+++++|+|+| +.+ ||+++.|.+..+|.||+||+||.|..+ .+
T Consensus 206 r~~~~~~f~~g~~~vLVaT~v~e~GiDip-~~~VI~~g~~~~~v~d~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~~~~ 284 (431)
T 2v6i_A 206 FESEYPKCKSEKWDFVITTDISEMGANFK-ADRVIDPRKTIKPILLDGRVSMQGPIAITPASAAQRRGRIGRNPEKLGDI 284 (431)
T ss_dssp HHHHTTHHHHSCCSEEEECGGGGTSCCCC-CSEEEECCEEEEEEEETTEEEEEEEEECCHHHHHHHHTTSSCCTTCCCCE
T ss_pred HHHHHHhhcCCCCeEEEECchHHcCcccC-CcEEEecCccccceecccceeecccccCCHHHHHHhhhccCCCCCCCCeE
Confidence 88899999999999999999999999999 544 678889999999999999999998654 55
Q ss_pred EEec
Q 010357 437 LLFL 440 (512)
Q Consensus 437 ~~~~ 440 (512)
+++.
T Consensus 285 ~~~~ 288 (431)
T 2v6i_A 285 YAYS 288 (431)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 5554
No 53
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=100.00 E-value=1.8e-34 Score=263.91 Aligned_cols=215 Identities=33% Similarity=0.542 Sum_probs=188.4
Q ss_pred CccCCcccCCCCHHHHHHHHHhcCCCCCcHHHHHHHHHhhcCCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCc
Q 010357 15 FASCSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGT 94 (512)
Q Consensus 15 ~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~ 94 (512)
....+|+++++++.+.+.+. .+||.+|+++|.++++.+++|+++++++|||||||++|++|++..+..... ..+..+.
T Consensus 26 ~~~~~f~~~~l~~~l~~~l~-~~g~~~~~~~Q~~~i~~~~~g~~~l~~apTGsGKT~~~~l~~l~~l~~~~~-~~~~~~~ 103 (242)
T 3fe2_A 26 KPVLNFYEANFPANVMDVIA-RQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPF-LERGDGP 103 (242)
T ss_dssp CCCSSTTTTTCCHHHHHHHH-TTTCCSCCHHHHHHHHHHHHTCCEEEEECTTSCHHHHHHHHHHHHHHTSCC-CCTTCCC
T ss_pred CccCCHhhcCCCHHHHHHHH-HCCCCCCCHHHHHHHHHHhCCCCEEEECCCcCHHHHHHHHHHHHHHHhccc-cccCCCC
Confidence 34578999999999999995 579999999999999999999999999999999999999999998865332 1223477
Q ss_pred eEEEEcCcHHHHHHHHHHHHHHHhhcCCcceEEEeCCCchHHHHHHHcCCCCEEEeCChHHHHHHhhcCCCcCCceeEEE
Q 010357 95 FALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWII 174 (512)
Q Consensus 95 ~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lV 174 (512)
+++|++||++|+.|+.+.+..+....+ ..+..+.||.........+..+++|+|+||+++.+.+.. ....+.++++||
T Consensus 104 ~~lil~Pt~~L~~Q~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~-~~~~~~~~~~lV 181 (242)
T 3fe2_A 104 ICLVLAPTRELAQQVQQVAAEYCRACR-LKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLEC-GKTNLRRTTYLV 181 (242)
T ss_dssp SEEEECSSHHHHHHHHHHHHHHHHHTT-CCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHH-TSCCCTTCCEEE
T ss_pred EEEEEeCcHHHHHHHHHHHHHHHhhcC-ceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHc-CCCCcccccEEE
Confidence 899999999999999999999887665 566778888888888888888899999999999998876 455678999999
Q ss_pred EcchhHHHhcCchHHHHHHHHHhccCCCCCCCCCCcccccceeEEEEEEecchhhHHHHHhhcCCCeEEccCCC
Q 010357 175 FDEADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEK 248 (512)
Q Consensus 175 ~DEah~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~ 248 (512)
+||||++.+++|...+..++..++. ..|++++|||+++.+..+...++.+|..+.+...
T Consensus 182 iDEah~l~~~~~~~~~~~i~~~~~~---------------~~q~~~~SAT~~~~~~~~~~~~l~~~~~i~~~~~ 240 (242)
T 3fe2_A 182 LDEADRMLDMGFEPQIRKIVDQIRP---------------DRQTLMWSATWPKEVRQLAEDFLKDYIHINIGAL 240 (242)
T ss_dssp ETTHHHHHHTTCHHHHHHHHTTSCS---------------SCEEEEEESCCCHHHHHHHHHHCSSCEEEEECC-
T ss_pred EeCHHHHhhhCcHHHHHHHHHhCCc---------------cceEEEEEeecCHHHHHHHHHHCCCCEEEEecCC
Confidence 9999999999999999999888765 7899999999999999999999999998877654
No 54
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=100.00 E-value=5.5e-34 Score=289.68 Aligned_cols=358 Identities=16% Similarity=0.213 Sum_probs=220.9
Q ss_pred CCcHHHHHHHHHhh----cCCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHH
Q 010357 41 APTKVQAQAIPVIL----SGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKL 116 (512)
Q Consensus 41 ~~~~~Q~~~~~~~~----~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 116 (512)
.|+|||.++++.+. .+++++++++||+|||++++..+...... ....++||+||+ +|+.||.+++.++
T Consensus 37 ~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~ai~~i~~~~~~-------~~~~~~LIv~P~-~l~~qw~~e~~~~ 108 (500)
T 1z63_A 37 NLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFSDAKKE-------NELTPSLVICPL-SVLKNWEEELSKF 108 (500)
T ss_dssp CCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHHHHHHHHHT-------TCCSSEEEEECS-TTHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHHHHHHHHHHhc-------CCCCCEEEEccH-HHHHHHHHHHHHH
Confidence 59999999998763 57899999999999999987777665433 234679999995 6889999999998
Q ss_pred HhhcCCcceEEEeCCCchHHHHHHHcCCCCEEEeCChHHHHHHhhcCCCcCCceeEEEEcchhHHHhcCchHHHHHHHHH
Q 010357 117 LHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDI 196 (512)
Q Consensus 117 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lV~DEah~l~~~~~~~~~~~i~~~ 196 (512)
+.. ..+..+.++... ......+|+|+||+++.+... +....+++||+||||++.+.. ......+..
T Consensus 109 ~~~---~~v~~~~g~~~~-----~~~~~~~ivi~t~~~l~~~~~----l~~~~~~~vIvDEaH~~kn~~--~~~~~~l~~ 174 (500)
T 1z63_A 109 APH---LRFAVFHEDRSK-----IKLEDYDIILTTYAVLLRDTR----LKEVEWKYIVIDEAQNIKNPQ--TKIFKAVKE 174 (500)
T ss_dssp CTT---SCEEECSSSTTS-----CCGGGSSEEEEEHHHHTTCHH----HHTCCEEEEEEETGGGGSCTT--SHHHHHHHT
T ss_pred CCC---ceEEEEecCchh-----ccccCCcEEEeeHHHHhccch----hcCCCcCEEEEeCccccCCHh--HHHHHHHHh
Confidence 642 333334343321 122357899999999965433 222378999999999986643 233444444
Q ss_pred hccCCCCCCCCCCcccccceeEEEEEEecchh-hHHHHH---hhcC--------------------------------CC
Q 010357 197 LGSRNIGSIGEGNEVSNVKRQNLLLSATLNEK-VNHLAK---ISLE--------------------------------TP 240 (512)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~-~~~~~~---~~~~--------------------------------~~ 240 (512)
++ ..+.+++||||..+ ...+.. .... .+
T Consensus 175 l~----------------~~~~l~LTaTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~~l~~ 238 (500)
T 1z63_A 175 LK----------------SKYRIALTGTPIENKVDDLWSIMTFLNPGLLGSYSEFKSKFATPIKKGDNMAKEELKAIISP 238 (500)
T ss_dssp SC----------------EEEEEEECSSCSTTCHHHHHHHHHHHSTTTTCCHHHHHTTTHHHHHTTCHHHHHHHHHHHTT
T ss_pred hc----------------cCcEEEEecCCCCCCHHHHHHHHHHhCCCcCCCHHHHHHHhccccccccHHHHHHHHHHHhh
Confidence 43 56789999998532 211111 0000 01
Q ss_pred eEEccCCC------cCCCCccccccCCcccchhhhcc----CCCccccccccc----------------cccccceeeeE
Q 010357 241 VLIGLDEK------KLPEDKSHVRFGSLESDVKEEVE----HPSTTMRSTTED----------------FKLPAQLVQRY 294 (512)
Q Consensus 241 ~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~----------------~~~~~~~~~~~ 294 (512)
..+..... .++.......+............ ............ ..-+.-.....
T Consensus 239 ~~lrr~k~~~~~~~~lp~~~~~~v~~~l~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~~~~~p~l~~~~~ 318 (500)
T 1z63_A 239 FILRRTKYDKAIINDLPDKIETNVYCNLTPEQAAMYKAEVENLFNNIDSVTGIKRKGMILSTLLKLKQIVDHPALLKGGE 318 (500)
T ss_dssp TEECCCTTCHHHHTTSCSEEEEEEEECCCHHHHHHHHHHHHHHTTTTTTCCTHHHHHHHHHHHHHHHHHTTCTHHHHCSC
T ss_pred HeeeecccccchhhcCCCCeEEEEEcCCCHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhCCHHHhcCcc
Confidence 11100000 00100000000000000000000 000000000000 00000000000
Q ss_pred EEecCCchHHHHHHHHHhhhccccCceEEEEeecchhhhhHHHhhhhhcCCCCCCChhHHHhhhhccceeeecCCCCHHH
Q 010357 295 VKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQED 374 (512)
Q Consensus 295 ~~~~~~~k~~~l~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~l~g~~~~~~ 374 (512)
.....+.|...+.+++.+.. ..+.++||||+++..++.+...|.... +..+..+||+++..+
T Consensus 319 ~~~~~s~K~~~l~~~l~~~~--~~~~k~lvF~~~~~~~~~l~~~l~~~~----------------~~~~~~~~g~~~~~~ 380 (500)
T 1z63_A 319 QSVRRSGKMIRTMEIIEEAL--DEGDKIAIFTQFVDMGKIIRNIIEKEL----------------NTEVPFLYGELSKKE 380 (500)
T ss_dssp CCSTTCHHHHHHHHHHHHHH--TTTCCEEEECSCHHHHHHHHHHHHHHH----------------TCCCCEEETTSCHHH
T ss_pred chhhcchhHHHHHHHHHHHH--ccCCcEEEEEehHHHHHHHHHHHHHhh----------------CCCeEEEECCCCHHH
Confidence 01233567777888887764 356899999999999999999997631 667888999999999
Q ss_pred HHHHHHhhhcC-CCc-EEEeecccccCCCCCCCcEEEEeCCCCChhHHHHhhhhcccCCCCccEEE--ecCccc-hhHHH
Q 010357 375 RRTTFGAFKTE-KKA-LLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRVGRTARLGERGDSLL--FLQPVE-MDYLQ 449 (512)
Q Consensus 375 r~~~~~~f~~~-~~~-vLvaT~~~~~Gldip~~~~VI~~~~p~s~~~~~Q~~GRagR~g~~g~~~~--~~~~~~-~~~~~ 449 (512)
|..+++.|+++ ..+ +|++|+++++|+|+|++++||++++|+|+..|.|++||++|.|+.+.+.+ ++..+. .+.+.
T Consensus 381 R~~~~~~F~~~~~~~vil~st~~~~~Glnl~~~~~vi~~d~~~~~~~~~Q~~gR~~R~Gq~~~v~v~~lv~~~tiee~i~ 460 (500)
T 1z63_A 381 RDDIISKFQNNPSVKFIVLSVKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVGTLEEKID 460 (500)
T ss_dssp HHHHHHHHHHCTTCCCCEEECCCC-CCCCCTTCSEEEESSCCSCC---CHHHHTTTTTTTTSCEEEEEEEETTSHHHHTH
T ss_pred HHHHHHHhcCCCCCCEEEEecccccCCCchhhCCEEEEeCCCCCcchHHHHHHHHHHcCCCCeeEEEEEEeCCCHHHHHH
Confidence 99999999998 454 79999999999999999999999999999999999999999998876643 444432 33444
Q ss_pred HHHHc
Q 010357 450 DLEKH 454 (512)
Q Consensus 450 ~l~~~ 454 (512)
.+...
T Consensus 461 ~~~~~ 465 (500)
T 1z63_A 461 QLLAF 465 (500)
T ss_dssp HHHTT
T ss_pred HHHHH
Confidence 44443
No 55
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=100.00 E-value=5.5e-34 Score=261.09 Aligned_cols=208 Identities=38% Similarity=0.662 Sum_probs=183.7
Q ss_pred CccCCcccCCCCHHHHHHHHHhcCCCCCcHHHHHHHHHhhcCCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCc
Q 010357 15 FASCSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGT 94 (512)
Q Consensus 15 ~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~ 94 (512)
-...+|+++++++.+.+.+. .+||..|+++|.++++.+++++++++++|||||||++|++|+++.+.... .+.
T Consensus 40 ~~~~~f~~l~l~~~l~~~l~-~~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~il~~l~~~~------~~~ 112 (249)
T 3ber_A 40 EETKTFKDLGVTDVLCEACD-QLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETP------QRL 112 (249)
T ss_dssp HHHCCTGGGTCCHHHHHHHH-HTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHSC------CSS
T ss_pred cccCCHHHcCCCHHHHHHHH-HcCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCCchhHhHHHHHHHHhcCC------CCc
Confidence 34578999999999999994 67999999999999999999999999999999999999999998876632 256
Q ss_pred eEEEEcCcHHHHHHHHHHHHHHHhhcCCcceEEEeCCCchHHHHHHHcCCCCEEEeCChHHHHHHhhcCCCcCCceeEEE
Q 010357 95 FALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWII 174 (512)
Q Consensus 95 ~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lV 174 (512)
+++|++|+++|+.|+++.+..+....+ ..+..+.||.........+..+++|+|+||+++.+.+...+.+.+.++++||
T Consensus 113 ~~lil~Ptr~L~~q~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~l~~~~~lV 191 (249)
T 3ber_A 113 FALVLTPTRELAFQISEQFEALGSSIG-VQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNLRALKYLV 191 (249)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHHGGGT-CCEEEECTTSCHHHHHHHHHTCCSEEEECHHHHHHHHHHSTTCCCTTCCEEE
T ss_pred eEEEEeCCHHHHHHHHHHHHHHhccCC-eeEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCCcCccccCEEE
Confidence 799999999999999999999887655 4566778888877777777888999999999999998876666778899999
Q ss_pred EcchhHHHhcCchHHHHHHHHHhccCCCCCCCCCCcccccceeEEEEEEecchhhHHHHHhhcCCCeEEcc
Q 010357 175 FDEADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGL 245 (512)
Q Consensus 175 ~DEah~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~ 245 (512)
+||||++.+.+|...+..++..++. ..+++++|||+++.+..+.+.++.+|..+.+
T Consensus 192 iDEah~l~~~~~~~~l~~i~~~~~~---------------~~~~l~~SAT~~~~v~~~~~~~l~~p~~i~v 247 (249)
T 3ber_A 192 MDEADRILNMDFETEVDKILKVIPR---------------DRKTFLFSATMTKKVQKLQRAALKNPVKCAV 247 (249)
T ss_dssp ECSHHHHHHTTCHHHHHHHHHSSCS---------------SSEEEEEESSCCHHHHHHHHHHCSSCEEEEC
T ss_pred EcChhhhhccChHHHHHHHHHhCCC---------------CCeEEEEeccCCHHHHHHHHHHCCCCEEEEe
Confidence 9999999999999999999987765 7899999999999999999999999987754
No 56
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=100.00 E-value=1.6e-34 Score=271.49 Aligned_cols=213 Identities=25% Similarity=0.431 Sum_probs=183.0
Q ss_pred ccccccCccCCcccCCCCHHHHHHHHHhcCCCCCcHHHHHHHHHhhcC--CCEEEEccCCChHhHHHHHHHHHHHhhcCC
Q 010357 9 ETVKEIFASCSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSG--RHVLVNAATGTGKTVAYLAPIINHLQSYSP 86 (512)
Q Consensus 9 ~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~Q~~~~~~~~~~--~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~ 86 (512)
+.+.|+++..+|+++++++.+.+.+. .+||..|+++|.++++.++.+ +++++++|||||||++|++|+++.+...
T Consensus 83 ~~~~p~~~~~~f~~l~l~~~l~~~l~-~~g~~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~~lp~l~~l~~~-- 159 (300)
T 3fmo_B 83 DPNSPLYSVKSFEELRLKPQLLQGVY-AMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPA-- 159 (300)
T ss_dssp STTCCCCCCCCSGGGTCCHHHHHHHH-HTTCCSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHHHHHHHHHCCTT--
T ss_pred CCCCCcCCcCCHhhcCCCHHHHHHHH-HcCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHHHHHHHHhhhcc--
Confidence 44667888899999999999999995 579999999999999999987 9999999999999999999999887542
Q ss_pred CCCCCCCceEEEEcCcHHHHHHHHHHHHHHHhhcCCcceEEEeCCCchHHHHHHHcCCCCEEEeCChHHHHHHhhcCCCc
Q 010357 87 RIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFL 166 (512)
Q Consensus 87 ~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~ 166 (512)
..+.++||++||++|+.|+++.+..+........+....++...... ...+++|+|+||++|++++.+.+.+.
T Consensus 160 ----~~~~~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~IlV~TP~~l~~~l~~~~~~~ 232 (300)
T 3fmo_B 160 ----NKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG---QKISEQIVIGTPGTVLDWCSKLKFID 232 (300)
T ss_dssp ----SCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTT---CCCCCSEEEECHHHHHHHHTTTCCCC
T ss_pred ----CCCceEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhh---hcCCCCEEEECHHHHHHHHHhcCCCC
Confidence 23567999999999999999999999876655666677776553322 24567999999999999997766777
Q ss_pred CCceeEEEEcchhHHHh-cCchHHHHHHHHHhccCCCCCCCCCCcccccceeEEEEEEecchhhHHHHHhhcCCCeEEcc
Q 010357 167 HTNLRWIIFDEADRILE-LGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGL 245 (512)
Q Consensus 167 ~~~~~~lV~DEah~l~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~ 245 (512)
++++++|||||||++.+ .++...+..++..++. ..|++++|||+++.+..+...++.+|..+.+
T Consensus 233 l~~l~~lVlDEad~l~~~~~~~~~~~~i~~~~~~---------------~~q~i~~SAT~~~~v~~~a~~~l~~p~~i~~ 297 (300)
T 3fmo_B 233 PKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPR---------------NCQMLLFSATFEDSVWKFAQKVVPDPNVIKL 297 (300)
T ss_dssp GGGCSEEEETTHHHHHHSTTHHHHHHHHHTTSCT---------------TCEEEEEESCCCHHHHHHHHHHSSSCEEEEE
T ss_pred hhhceEEEEeCHHHHhhccCcHHHHHHHHHhCCC---------------CCEEEEEeccCCHHHHHHHHHHCCCCeEEEe
Confidence 88999999999999998 6888888888877765 7899999999999999999999999998765
Q ss_pred C
Q 010357 246 D 246 (512)
Q Consensus 246 ~ 246 (512)
.
T Consensus 298 ~ 298 (300)
T 3fmo_B 298 K 298 (300)
T ss_dssp C
T ss_pred c
Confidence 4
No 57
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=100.00 E-value=7e-34 Score=253.78 Aligned_cols=204 Identities=35% Similarity=0.523 Sum_probs=180.0
Q ss_pred cCCcccCCCCHHHHHHHHHhcCCCCCcHHHHHHHHHhhcCCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceE
Q 010357 17 SCSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFA 96 (512)
Q Consensus 17 ~~~~~~~~l~~~~~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (512)
+.+|+++++++++.+.+. .+||.+|+++|+++++.+++++++++++|||+|||++|++|++..+... ..+.++
T Consensus 2 ~~~f~~~~l~~~l~~~l~-~~g~~~~~~~Q~~~i~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~------~~~~~~ 74 (206)
T 1vec_A 2 GNEFEDYCLKRELLMGIF-EMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLK------KDNIQA 74 (206)
T ss_dssp CSSGGGSCCCHHHHHHHH-TTTCCSCCHHHHHHHHHHHTTCCEEEECCSSSTTHHHHHHHHHHHCCTT------SCSCCE
T ss_pred CCChhhcCCCHHHHHHHH-HCCCCCCCHHHHHHHHHHccCCCEEEECCCCCchHHHHHHHHHHHhccc------CCCeeE
Confidence 568999999999999995 5799999999999999999999999999999999999999999876431 235679
Q ss_pred EEEcCcHHHHHHHHHHHHHHHhhcCCcceEEEeCCCchHHHHHHHcCCCCEEEeCChHHHHHHhhcCCCcCCceeEEEEc
Q 010357 97 LVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFD 176 (512)
Q Consensus 97 lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lV~D 176 (512)
+|++|+++|+.|+.+.+..+....+...+....++.........+..+++|+|+||+++.+.+.. ....+.+++++|+|
T Consensus 75 lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~-~~~~~~~~~~lViD 153 (206)
T 1vec_A 75 MVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKK-GVAKVDHVQMIVLD 153 (206)
T ss_dssp EEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHT-TCSCCTTCCEEEEE
T ss_pred EEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHhcCCCCCEEEeCHHHHHHHHHc-CCcCcccCCEEEEE
Confidence 99999999999999999999876655677778888888777777778899999999999998876 44567789999999
Q ss_pred chhHHHhcCchHHHHHHHHHhccCCCCCCCCCCcccccceeEEEEEEecchhhHHHHHhhcCCCeEE
Q 010357 177 EADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLI 243 (512)
Q Consensus 177 Eah~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~ 243 (512)
|||++.+.++...+..++..++. ..+++++|||+++.+..+...++.+|..+
T Consensus 154 Eah~~~~~~~~~~l~~i~~~~~~---------------~~~~l~~SAT~~~~~~~~~~~~l~~p~~i 205 (206)
T 1vec_A 154 EADKLLSQDFVQIMEDIILTLPK---------------NRQILLYSATFPLSVQKFMNSHLEKPYEI 205 (206)
T ss_dssp THHHHTSTTTHHHHHHHHHHSCT---------------TCEEEEEESCCCHHHHHHHHHHCSSCEEE
T ss_pred ChHHhHhhCcHHHHHHHHHhCCc---------------cceEEEEEeeCCHHHHHHHHHHcCCCeEe
Confidence 99999998999999999988875 78999999999999999999999888765
No 58
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=100.00 E-value=4.3e-34 Score=293.26 Aligned_cols=286 Identities=16% Similarity=0.160 Sum_probs=202.6
Q ss_pred HhhcCCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHHhhcCCcceEEEeCC
Q 010357 52 VILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGG 131 (512)
Q Consensus 52 ~~~~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~g 131 (512)
..+++++++++||||||||..+ +..+.. ....+|++|+++|+.|+++.+... + ..++.+.|+
T Consensus 151 r~l~rk~vlv~apTGSGKT~~a----l~~l~~---------~~~gl~l~PtR~LA~Qi~~~l~~~----g-~~v~lltG~ 212 (677)
T 3rc3_A 151 RAMQRKIIFHSGPTNSGKTYHA----IQKYFS---------AKSGVYCGPLKLLAHEIFEKSNAA----G-VPCDLVTGE 212 (677)
T ss_dssp HTSCCEEEEEECCTTSSHHHHH----HHHHHH---------SSSEEEEESSHHHHHHHHHHHHHT----T-CCEEEECSS
T ss_pred HhcCCCEEEEEcCCCCCHHHHH----HHHHHh---------cCCeEEEeCHHHHHHHHHHHHHhc----C-CcEEEEECC
Confidence 4568889999999999999833 333333 223599999999999999998875 2 345666666
Q ss_pred CchHHHHHHHcCCCCEEEeCChHHHHHHhhcCCCcCCceeEEEEcchhHHHhcCchHHHHHHHHHhccCCCCCCCCCCcc
Q 010357 132 ENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILGSRNIGSIGEGNEV 211 (512)
Q Consensus 132 ~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lV~DEah~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 211 (512)
..... .......+++++|++.+. ....+++||+||||++.+.+++..+..++..++..
T Consensus 213 ~~~iv--~TpGr~~~il~~T~e~~~---------l~~~v~lvVIDEaH~l~d~~~g~~~~~~l~~l~~~----------- 270 (677)
T 3rc3_A 213 ERVTV--QPNGKQASHVSCTVEMCS---------VTTPYEVAVIDEIQMIRDPARGWAWTRALLGLCAE----------- 270 (677)
T ss_dssp CEECC--STTCCCCSEEEEEGGGCC---------SSSCEEEEEECSGGGGGCTTTHHHHHHHHHHCCEE-----------
T ss_pred eeEEe--cCCCcccceeEecHhHhh---------hcccCCEEEEecceecCCccchHHHHHHHHccCcc-----------
Confidence 54300 000112567777775442 23478999999999999989999999998887631
Q ss_pred cccceeEEEEEEecchhhHHHHHhhcCCCeEEccCCCcCCCCccccccCCcccchhhhccCCCcccccccccccccccee
Q 010357 212 SNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLPEDKSHVRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLV 291 (512)
Q Consensus 212 ~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (512)
..+++++|||.+. ...+...... ...+...... .+....
T Consensus 271 ---~i~il~~SAT~~~-i~~l~~~~~~-~~~v~~~~r~------------------------------------~~l~~~ 309 (677)
T 3rc3_A 271 ---EVHLCGEPAAIDL-VMELMYTTGE-EVEVRDYKRL------------------------------------TPISVL 309 (677)
T ss_dssp ---EEEEEECGGGHHH-HHHHHHHHTC-CEEEEECCCS------------------------------------SCEEEC
T ss_pred ---ceEEEeccchHHH-HHHHHHhcCC-ceEEEEeeec------------------------------------chHHHH
Confidence 7899999999533 3333333222 2221111000 000000
Q ss_pred eeEEEecCCchHHHHHHHHHhhhccccCceEEEEeecchhhhhHHHhhhhhcCCCCCCChhHHHhhhhccceeeecCCCC
Q 010357 292 QRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMK 371 (512)
Q Consensus 292 ~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~l~g~~~ 371 (512)
.. .+ ..+.. . ....+|||++++.++.+++.|.+. +..+..+||+|+
T Consensus 310 ~~--------~l----~~l~~----~-~~g~iIf~~s~~~ie~la~~L~~~-----------------g~~v~~lHG~L~ 355 (677)
T 3rc3_A 310 DH--------AL----ESLDN----L-RPGDCIVCFSKNDIYSVSRQIEIR-----------------GLESAVIYGSLP 355 (677)
T ss_dssp SS--------CC----CSGGG----C-CTTEEEECSSHHHHHHHHHHHHHT-----------------TCCCEEECTTSC
T ss_pred HH--------HH----HHHHh----c-CCCCEEEEcCHHHHHHHHHHHHhc-----------------CCCeeeeeccCC
Confidence 00 00 00111 1 234588999999999999999886 778999999999
Q ss_pred HHHHHHHHHhhhc--CCCcEEEeecccccCCCCCCCcEEEEeCC--------------CCChhHHHHhhhhcccCCCC--
Q 010357 372 QEDRRTTFGAFKT--EKKALLLSTDVAARGLDFPKVKCIIQYDS--------------AGEATEYVHRVGRTARLGER-- 433 (512)
Q Consensus 372 ~~~r~~~~~~f~~--~~~~vLvaT~~~~~Gldip~~~~VI~~~~--------------p~s~~~~~Q~~GRagR~g~~-- 433 (512)
+.+|..+++.|++ |..+|||||+++++|+|+ ++++||+++. |.+..+|+||+|||||.|..
T Consensus 356 ~~~R~~~~~~F~~~~g~~~VLVATdi~e~GlDi-~v~~VI~~~~~k~~~~~~G~~~~~p~s~~~~~QR~GRAGR~g~~g~ 434 (677)
T 3rc3_A 356 PGTKLAQAKKFNDPNDPCKILVATDAIGMGLNL-SIRRIIFYSLIKPSINEKGERELEPITTSQALQIAGRAGRFSSRFK 434 (677)
T ss_dssp HHHHHHHHHHHHCTTSSCCEEEECGGGGSSCCC-CBSEEEESCSBC-----------CBCCHHHHHHHHTTBTCTTSSCS
T ss_pred HHHHHHHHHHHHccCCCeEEEEeCcHHHCCcCc-CccEEEECCccccccccCCccccccCCHHHHHHHhcCCCCCCCCCC
Confidence 9999999999999 889999999999999999 8999999998 77999999999999999965
Q ss_pred -ccEEEecCccchhHHHHHHHc
Q 010357 434 -GDSLLFLQPVEMDYLQDLEKH 454 (512)
Q Consensus 434 -g~~~~~~~~~~~~~~~~l~~~ 454 (512)
|.|+.++. .+...++.+...
T Consensus 435 ~G~v~~l~~-~d~~~~~~~~~~ 455 (677)
T 3rc3_A 435 EGEVTTMNH-EDLSLLKEILKR 455 (677)
T ss_dssp SEEEEESST-THHHHHHHHHHS
T ss_pred CEEEEEEec-chHHHHHHHHhc
Confidence 55555544 444555655554
No 59
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=100.00 E-value=5.7e-34 Score=258.38 Aligned_cols=211 Identities=35% Similarity=0.521 Sum_probs=174.0
Q ss_pred CccCCccc-CCCCHHHHHHHHHhcCCCCCcHHHHHHHHHhhcCCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCC
Q 010357 15 FASCSFSS-LGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSG 93 (512)
Q Consensus 15 ~~~~~~~~-~~l~~~~~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~ 93 (512)
.+..+|++ +++++++.+.+.+ +||.+|+++|.++++.+++|+++++++|||||||++|++|++..+...........+
T Consensus 16 ~p~~~f~~~~~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~~~~~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~~~~~~ 94 (228)
T 3iuy_A 16 KPTCRFKDAFQQYPDLLKSIIR-VGILKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISREQRNG 94 (228)
T ss_dssp CCCCSHHHHHTTCHHHHHHHHH-HTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHC---------CC
T ss_pred CChhhHhhhhccCHHHHHHHHH-CCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhccchhhccCC
Confidence 34568898 7999999999965 699999999999999999999999999999999999999999887654333233457
Q ss_pred ceEEEEcCcHHHHHHHHHHHHHHHhhcCCcceEEEeCCCchHHHHHHHcCCCCEEEeCChHHHHHHhhcCCCcCCceeEE
Q 010357 94 TFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWI 173 (512)
Q Consensus 94 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~l 173 (512)
.+++|++|+++|+.|+.+.+..+.. .......+.+|.........+..+++|+|+||+++.+.+.. ....+.++++|
T Consensus 95 ~~~lil~Pt~~L~~q~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~-~~~~~~~~~~l 171 (228)
T 3iuy_A 95 PGMLVLTPTRELALHVEAECSKYSY--KGLKSICIYGGRNRNGQIEDISKGVDIIIATPGRLNDLQMN-NSVNLRSITYL 171 (228)
T ss_dssp CSEEEECSSHHHHHHHHHHHHHHCC--TTCCEEEECC------CHHHHHSCCSEEEECHHHHHHHHHT-TCCCCTTCCEE
T ss_pred CcEEEEeCCHHHHHHHHHHHHHhcc--cCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHc-CCcCcccceEE
Confidence 8899999999999999999999752 23556677788777777777888899999999999998766 45567789999
Q ss_pred EEcchhHHHhcCchHHHHHHHHHhccCCCCCCCCCCcccccceeEEEEEEecchhhHHHHHhhcCCCeEEc
Q 010357 174 IFDEADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIG 244 (512)
Q Consensus 174 V~DEah~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~ 244 (512)
|+||||++.+.+|...+..++..++. ..|++++|||+++.+..+...++.+|..+.
T Consensus 172 ViDEah~~~~~~~~~~~~~i~~~~~~---------------~~~~l~~SAT~~~~~~~~~~~~l~~p~~i~ 227 (228)
T 3iuy_A 172 VIDEADKMLDMEFEPQIRKILLDVRP---------------DRQTVMTSATWPDTVRQLALSYLKDPMIVY 227 (228)
T ss_dssp EECCHHHHHHTTCHHHHHHHHHHSCS---------------SCEEEEEESCCCHHHHHHHHTTCSSCEEEE
T ss_pred EEECHHHHhccchHHHHHHHHHhCCc---------------CCeEEEEEeeCCHHHHHHHHHHCCCCEEEe
Confidence 99999999999999999999988865 789999999999999999999999888764
No 60
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=100.00 E-value=1e-33 Score=255.01 Aligned_cols=209 Identities=29% Similarity=0.499 Sum_probs=177.6
Q ss_pred cCCcccCCCCHHHHHHHHHhcCCCCCcHHHHHHHHHhhcCCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceE
Q 010357 17 SCSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFA 96 (512)
Q Consensus 17 ~~~~~~~~l~~~~~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (512)
..+|+++++++.+.+.+. .+||.+|+++|.++++.+++++++++++|||+|||++|++|+++.+... ..+.++
T Consensus 3 ~~~f~~~~l~~~l~~~l~-~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~------~~~~~~ 75 (219)
T 1q0u_A 3 ETQFTRFPFQPFIIEAIK-TLRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEKIKPE------RAEVQA 75 (219)
T ss_dssp -CCGGGSCCCHHHHHHHH-HTTCCSCCHHHHHHHHHHHHTCCEEEECCSSHHHHHHHHHHHHHHCCTT------SCSCCE
T ss_pred CCCHhhCCCCHHHHHHHH-HCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhC------cCCceE
Confidence 468999999999999995 5799999999999999999999999999999999999999999887542 135679
Q ss_pred EEEcCcHHHHHHHHHHHHHHHhhcC---CcceEEEeCCCchHHHHHHHcCCCCEEEeCChHHHHHHhhcCCCcCCceeEE
Q 010357 97 LVLVPTRELCLQVYEILHKLLHRFH---WIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWI 173 (512)
Q Consensus 97 lil~Pt~~L~~q~~~~~~~~~~~~~---~~~~~~~~~g~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~l 173 (512)
+|++|+++|+.|+.+.+..+....+ ......+.||.........+..+++|+|+||+++.+.+.. ....+.+++++
T Consensus 76 lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~-~~~~~~~~~~l 154 (219)
T 1q0u_A 76 VITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEKLNVQPHIVIGTPGRINDFIRE-QALDVHTAHIL 154 (219)
T ss_dssp EEECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTCCCSSCCSEEEECHHHHHHHHHT-TCCCGGGCCEE
T ss_pred EEEcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHHHHcCCCCCEEEeCHHHHHHHHHc-CCCCcCcceEE
Confidence 9999999999999999999886542 2455667777766555555556789999999999998876 45566789999
Q ss_pred EEcchhHHHhcCchHHHHHHHHHhccCCCCCCCCCCcccccceeEEEEEEecchhhHHHHHhhcCCCeEEccCCC
Q 010357 174 IFDEADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEK 248 (512)
Q Consensus 174 V~DEah~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~ 248 (512)
|+||||++.+.++...+..++..++. ..+++++|||+++.+..+.+.++.+|..+.....
T Consensus 155 ViDEah~~~~~~~~~~l~~i~~~~~~---------------~~~~l~~SAT~~~~~~~~~~~~~~~p~~~~~~~~ 214 (219)
T 1q0u_A 155 VVDEADLMLDMGFITDVDQIAARMPK---------------DLQMLVFSATIPEKLKPFLKKYMENPTFVHVLEH 214 (219)
T ss_dssp EECSHHHHHHTTCHHHHHHHHHTSCT---------------TCEEEEEESCCCGGGHHHHHHHCSSCEEEECC--
T ss_pred EEcCchHHhhhChHHHHHHHHHhCCc---------------ccEEEEEecCCCHHHHHHHHHHcCCCeEEEeecc
Confidence 99999999999999999999988765 7899999999999999999999999988765543
No 61
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=100.00 E-value=3.7e-33 Score=254.42 Aligned_cols=215 Identities=37% Similarity=0.616 Sum_probs=181.2
Q ss_pred ccCccCCcccCCCCHHHHHHHHHhcCCCCCcHHHHHHHHHhhcCCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCC
Q 010357 13 EIFASCSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSS 92 (512)
Q Consensus 13 ~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~ 92 (512)
+.....+|+++++++.+.+.+. .+||..|+++|.++++.+++++++++++|||+|||++|++|+++.+...... ...
T Consensus 20 ~~~~~~~f~~~~l~~~l~~~l~-~~~~~~~~~~Q~~~i~~~~~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~--~~~ 96 (236)
T 2pl3_A 20 NVNEITRFSDFPLSKKTLKGLQ-EAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQWT--STD 96 (236)
T ss_dssp CGGGCSBGGGSCCCHHHHHHHH-HTTCCBCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHTTCC--GGG
T ss_pred CCcccCCHhhcCCCHHHHHHHH-HCCCCCCCHHHHHHHHHHhCCCCEEEEeCCCCcHHHHHHHHHHHHHHhhccc--ccC
Confidence 3445678999999999999995 5799999999999999999999999999999999999999999887653211 123
Q ss_pred CceEEEEcCcHHHHHHHHHHHHHHHhhcCCcceEEEeCCCchHHHHHHHcCCCCEEEeCChHHHHHHhhcCCCcCCceeE
Q 010357 93 GTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRW 172 (512)
Q Consensus 93 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~ 172 (512)
+.+++|++|+++|+.|+.+.+..+....+ ..+..+.||.........+ .+++|+|+||+++.+.+.....+.+.++++
T Consensus 97 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~-~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~ 174 (236)
T 2pl3_A 97 GLGVLIISPTRELAYQTFEVLRKVGKNHD-FSAGLIIGGKDLKHEAERI-NNINILVCTPGRLLQHMDETVSFHATDLQM 174 (236)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHTTTSS-CCEEEECCC--CHHHHHHH-TTCSEEEECHHHHHHHHHHCSSCCCTTCCE
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhCCCC-eeEEEEECCCCHHHHHHhC-CCCCEEEECHHHHHHHHHhcCCcccccccE
Confidence 67799999999999999999999876544 4556677777666555554 578999999999999887755666788999
Q ss_pred EEEcchhHHHhcCchHHHHHHHHHhccCCCCCCCCCCcccccceeEEEEEEecchhhHHHHHhhcCCCeEEccCC
Q 010357 173 IIFDEADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDE 247 (512)
Q Consensus 173 lV~DEah~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~ 247 (512)
||+||||++.++++...+..++..++. ..+++++|||+++.+..+.+.++.+|..+.+..
T Consensus 175 lViDEah~~~~~~~~~~~~~i~~~~~~---------------~~~~l~~SAT~~~~~~~~~~~~~~~p~~i~~~~ 234 (236)
T 2pl3_A 175 LVLDEADRILDMGFADTMNAVIENLPK---------------KRQTLLFSATQTKSVKDLARLSLKNPEYVWVHE 234 (236)
T ss_dssp EEETTHHHHHHTTTHHHHHHHHHTSCT---------------TSEEEEEESSCCHHHHHHHHHSCSSCEEEECCC
T ss_pred EEEeChHHHhcCCcHHHHHHHHHhCCC---------------CCeEEEEEeeCCHHHHHHHHHhCCCCEEEEeCC
Confidence 999999999999999999999988865 789999999999999999999999998876543
No 62
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=100.00 E-value=3.4e-33 Score=253.29 Aligned_cols=207 Identities=31% Similarity=0.461 Sum_probs=176.0
Q ss_pred CccCCcccCCCCHHHHHHHHHhcCCCCCcHHHHHHHHHhhcCCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCc
Q 010357 15 FASCSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGT 94 (512)
Q Consensus 15 ~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~ 94 (512)
-...+|+++++++++.+.+. .+||.+|+++|.++++.+++|+++++++|||+|||++|++|++..+... ..+.
T Consensus 21 ~~~~~f~~l~l~~~l~~~l~-~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~------~~~~ 93 (230)
T 2oxc_A 21 AEPADFESLLLSRPVLEGLR-AAGFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALDSLVLE------NLST 93 (230)
T ss_dssp ---CCGGGGTCCHHHHHHHH-HTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTT------SCSC
T ss_pred CCCCCHhhcCCCHHHHHHHH-HCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhc------CCCc
Confidence 34568999999999999995 5799999999999999999999999999999999999999998887542 2356
Q ss_pred eEEEEcCcHHHHHHHHHHHHHHHhhcCCcceEEEeCCCchHHHHHHHcCCCCEEEeCChHHHHHHhhcCCCcCCceeEEE
Q 010357 95 FALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWII 174 (512)
Q Consensus 95 ~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lV 174 (512)
+++|++|+++|+.|+.+.+..+........+..+.||.........+ .+++|+|+||+++.+.+.. ..+.+.+++++|
T Consensus 94 ~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~Iiv~Tp~~l~~~~~~-~~~~~~~~~~lV 171 (230)
T 2oxc_A 94 QILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL-KKCHIAVGSPGRIKQLIEL-DYLNPGSIRLFI 171 (230)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT-TSCSEEEECHHHHHHHHHT-TSSCGGGCCEEE
T ss_pred eEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc-cCCCEEEECHHHHHHHHhc-CCcccccCCEEE
Confidence 79999999999999999999987655446667777777766555544 4789999999999998876 455667899999
Q ss_pred EcchhHHHhcC-chHHHHHHHHHhccCCCCCCCCCCcccccceeEEEEEEecchhhHHHHHhhcCCCeEEcc
Q 010357 175 FDEADRILELG-FGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGL 245 (512)
Q Consensus 175 ~DEah~l~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~ 245 (512)
+||||++.+.+ |...+..++..++. ..|++++|||+++.+..+...++.+|..+.+
T Consensus 172 iDEah~~~~~~~~~~~~~~i~~~~~~---------------~~~~l~lSAT~~~~~~~~~~~~~~~p~~i~~ 228 (230)
T 2oxc_A 172 LDEADKLLEEGSFQEQINWIYSSLPA---------------SKQMLAVSATYPEFLANALTKYMRDPTFVRL 228 (230)
T ss_dssp ESSHHHHHSTTSSHHHHHHHHHHSCS---------------SCEEEEEESCCCHHHHHHHTTTCSSCEEECC
T ss_pred eCCchHhhcCcchHHHHHHHHHhCCC---------------CCeEEEEEeccCHHHHHHHHHHcCCCeEEEc
Confidence 99999999987 99999999988875 7899999999999998999888988887754
No 63
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=100.00 E-value=2.5e-33 Score=258.77 Aligned_cols=208 Identities=41% Similarity=0.707 Sum_probs=177.2
Q ss_pred CccCCcccCC--CCHHHHHHHHHhcCCCCCcHHHHHHHHHhhcCCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCC
Q 010357 15 FASCSFSSLG--LHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSS 92 (512)
Q Consensus 15 ~~~~~~~~~~--l~~~~~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~ 92 (512)
+...+|++++ +++.+.+.+. .+||..|+++|.++++.++.++++++++|||||||++|++|+++.+...... ...
T Consensus 49 ~~~~~f~~l~~~l~~~l~~~l~-~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~--~~~ 125 (262)
T 3ly5_A 49 FEDTSFASLCNLVNENTLKAIK-EMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLRFM--PRN 125 (262)
T ss_dssp SGGGCC-----CCCHHHHHHHH-HTTCCBCCHHHHHHHHHHHHTCCCEECCCTTSCHHHHHHHHHHHHHHHTTCC--GGG
T ss_pred cccCChhHhccccCHHHHHHHH-HCCCCCCCHHHHHHHHHHhCCCcEEEEccCCCCchHHHHHHHHHHHHhcccc--ccC
Confidence 4556677776 9999999995 5799999999999999999999999999999999999999999988753211 123
Q ss_pred CceEEEEcCcHHHHHHHHHHHHHHHhhcCCcceEEEeCCCchHHHHHHHcCCCCEEEeCChHHHHHHhhcCCCcCCceeE
Q 010357 93 GTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRW 172 (512)
Q Consensus 93 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~ 172 (512)
+.+++|++||++|+.|+++.++.++...+ ..+..+.|+.........+..+++|+|+||+++.+.+.....+.+.++++
T Consensus 126 ~~~~lil~Pt~~La~q~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~l~~ 204 (262)
T 3ly5_A 126 GTGVLILSPTRELAMQTFGVLKELMTHHV-HTYGLIMGGSNRSAEAQKLGNGINIIVATPGRLLDHMQNTPGFMYKNLQC 204 (262)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHTTTCC-SCEEEECSSSCHHHHHHHHHHCCSEEEECHHHHHHHHHHCTTCCCTTCCE
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHHhhcC-ceEEEEECCCCHHHHHHHhcCCCCEEEEcHHHHHHHHHccCCcccccCCE
Confidence 67799999999999999999999887654 45667788888888777777789999999999999888766677789999
Q ss_pred EEEcchhHHHhcCchHHHHHHHHHhccCCCCCCCCCCcccccceeEEEEEEecchhhHHHHHhhcCCCe
Q 010357 173 IIFDEADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPV 241 (512)
Q Consensus 173 lV~DEah~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~ 241 (512)
||+||||++.+++|...+..++..++. ..|++++|||+++.+..+.+..+..+.
T Consensus 205 lViDEah~l~~~~~~~~l~~i~~~~~~---------------~~q~l~~SAT~~~~v~~~~~~~l~~~~ 258 (262)
T 3ly5_A 205 LVIDEADRILDVGFEEELKQIIKLLPT---------------RRQTMLFSATQTRKVEDLARISLKKEP 258 (262)
T ss_dssp EEECSHHHHHHTTCHHHHHHHHHHSCS---------------SSEEEEECSSCCHHHHHHHHHHCSSCC
T ss_pred EEEcChHHHhhhhHHHHHHHHHHhCCC---------------CCeEEEEEecCCHHHHHHHHHHcCCCC
Confidence 999999999999999999999998876 789999999999999999998876544
No 64
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=100.00 E-value=5.2e-33 Score=248.36 Aligned_cols=204 Identities=38% Similarity=0.567 Sum_probs=177.9
Q ss_pred CcccCCCCHHHHHHHHHhcCCCCCcHHHHHHHHHhhcCCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEE
Q 010357 19 SFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALV 98 (512)
Q Consensus 19 ~~~~~~l~~~~~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~li 98 (512)
+|+++++++++.+.+. .+||.+|+++|+++++.+++++++++++|||+|||++|++++++.+..... ...+.+++|
T Consensus 2 ~f~~~~l~~~l~~~l~-~~~~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~l~~~~~---~~~~~~~li 77 (207)
T 2gxq_A 2 EFKDFPLKPEILEALH-GRGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAERLAPSQE---RGRKPRALV 77 (207)
T ss_dssp CGGGSCCCHHHHHHHH-HTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCCC---TTCCCSEEE
T ss_pred ChhhcCCCHHHHHHHH-HcCCCCCCHHHHHHHHHHcCCCCEEEECCCCChHHHHHHHHHHHHHhhccc---cCCCCcEEE
Confidence 6999999999999995 579999999999999999999999999999999999999999988754221 134678999
Q ss_pred EcCcHHHHHHHHHHHHHHHhhcCCcceEEEeCCCchHHHHHHHcCCCCEEEeCChHHHHHHhhcCCCcCCceeEEEEcch
Q 010357 99 LVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEA 178 (512)
Q Consensus 99 l~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lV~DEa 178 (512)
++|+++|+.|+.+.+..+... ..+..+.++.........+..+++|+|+||+++.+.+.. ..+.+.+++++|+|||
T Consensus 78 l~P~~~L~~q~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~-~~~~~~~~~~iViDEa 153 (207)
T 2gxq_A 78 LTPTRELALQVASELTAVAPH---LKVVAVYGGTGYGKQKEALLRGADAVVATPGRALDYLRQ-GVLDLSRVEVAVLDEA 153 (207)
T ss_dssp ECSSHHHHHHHHHHHHHHCTT---SCEEEECSSSCSHHHHHHHHHCCSEEEECHHHHHHHHHH-TSSCCTTCSEEEEESH
T ss_pred EECCHHHHHHHHHHHHHHhhc---ceEEEEECCCChHHHHHHhhCCCCEEEECHHHHHHHHHc-CCcchhhceEEEEECh
Confidence 999999999999999988653 456677788877777777777899999999999998876 5556778999999999
Q ss_pred hHHHhcCchHHHHHHHHHhccCCCCCCCCCCcccccceeEEEEEEecchhhHHHHHhhcCCCeEEcc
Q 010357 179 DRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGL 245 (512)
Q Consensus 179 h~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~ 245 (512)
|++.+.++...+..++..++. ..+++++|||+++.+..+.+.++.+|..+.+
T Consensus 154 h~~~~~~~~~~~~~i~~~~~~---------------~~~~i~~SAT~~~~~~~~~~~~~~~p~~i~~ 205 (207)
T 2gxq_A 154 DEMLSMGFEEEVEALLSATPP---------------SRQTLLFSATLPSWAKRLAERYMKNPVLINV 205 (207)
T ss_dssp HHHHHTTCHHHHHHHHHTSCT---------------TSEEEEECSSCCHHHHHHHHHHCSSCEEEEC
T ss_pred hHhhccchHHHHHHHHHhCCc---------------cCeEEEEEEecCHHHHHHHHHHcCCCeEEEc
Confidence 999999999999999887765 7899999999999999999999999987754
No 65
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=100.00 E-value=2.9e-33 Score=254.91 Aligned_cols=207 Identities=32% Similarity=0.466 Sum_probs=168.8
Q ss_pred ccCCcccCCCCHHHHHHHHHhcCCCCCcHHHHHHHHHhhcCCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCce
Q 010357 16 ASCSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTF 95 (512)
Q Consensus 16 ~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (512)
...+|+++++++++.+.+. .+||..|+++|.++++.+++++++++++|||||||++|++|+++.+... ..+.+
T Consensus 28 ~~~~f~~l~l~~~l~~~l~-~~g~~~~~~~Q~~ai~~i~~~~~~li~apTGsGKT~~~~l~~l~~l~~~------~~~~~ 100 (237)
T 3bor_A 28 IVDNFDDMNLKESLLRGIY-AYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIE------FKETQ 100 (237)
T ss_dssp CCCSGGGSCCCHHHHHHHH-HHTCCSCCHHHHHHHHHHHTTCCEEECCCSSHHHHHHHHHHHHHHCCTT------SCSCC
T ss_pred ccCChhhcCCCHHHHHHHH-HCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhc------CCCce
Confidence 4578999999999999995 5699999999999999999999999999999999999999999887531 13567
Q ss_pred EEEEcCcHHHHHHHHHHHHHHHhhcCCcceEEEeCCCchHHHHHHHcCC-CCEEEeCChHHHHHHhhcCCCcCCceeEEE
Q 010357 96 ALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKG-ISILVATPGRLLDHLKHTSSFLHTNLRWII 174 (512)
Q Consensus 96 ~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lV 174 (512)
++|++|+++|+.|+.+.+..++...+ .......+|.........+..+ ++|+|+||+++.+.+.. ..+.+..+++||
T Consensus 101 ~lil~Pt~~L~~q~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~l~~~~~~Ilv~Tp~~l~~~l~~-~~~~~~~~~~lV 178 (237)
T 3bor_A 101 ALVLAPTRELAQQIQKVILALGDYMG-ATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNR-RYLSPKWIKMFV 178 (237)
T ss_dssp EEEECSSHHHHHHHHHHHHHHTTTTT-CCEEEECC-------------CCCSEEEECHHHHHHHHHT-TSSCSTTCCEEE
T ss_pred EEEEECcHHHHHHHHHHHHHHhhhcC-ceEEEEECCCchHHHHHHHhcCCCCEEEECHHHHHHHHHh-CCcCcccCcEEE
Confidence 99999999999999999999876544 4455666776666666556555 89999999999998876 455667899999
Q ss_pred EcchhHHHhcCchHHHHHHHHHhccCCCCCCCCCCcccccceeEEEEEEecchhhHHHHHhhcCCCeEEccC
Q 010357 175 FDEADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLD 246 (512)
Q Consensus 175 ~DEah~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~ 246 (512)
+||||++.+.++...+..++..++. ..+++++|||+++.+..+...++.+|..+.+.
T Consensus 179 iDEah~~~~~~~~~~l~~i~~~~~~---------------~~~~i~~SAT~~~~~~~~~~~~l~~p~~i~v~ 235 (237)
T 3bor_A 179 LDEADEMLSRGFKDQIYEIFQKLNT---------------SIQVVLLSATMPTDVLEVTKKFMRDPIRILVK 235 (237)
T ss_dssp EESHHHHHHTTCHHHHHHHHHHSCT---------------TCEEEEECSSCCHHHHHHHHHHCSSCEEEC--
T ss_pred ECCchHhhccCcHHHHHHHHHhCCC---------------CCeEEEEEEecCHHHHHHHHHHCCCCEEEEec
Confidence 9999999999999999999988765 78999999999999999999999999887654
No 66
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=100.00 E-value=7.4e-33 Score=250.51 Aligned_cols=208 Identities=31% Similarity=0.513 Sum_probs=169.5
Q ss_pred ccCCcccCCCCHHHHHHHHHhcCCCCCcHHHHHHHHHhhcCCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCce
Q 010357 16 ASCSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTF 95 (512)
Q Consensus 16 ~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (512)
...+|+++++++.+.+.+. .+||.+|+++|.++++.+++++++++++|||+|||++|++++++.+... ..+.+
T Consensus 12 ~~~~f~~l~l~~~l~~~l~-~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~~~~~~l~~l~~~------~~~~~ 84 (224)
T 1qde_A 12 VVYKFDDMELDENLLRGVF-GYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTS------VKAPQ 84 (224)
T ss_dssp CCCCGGGGTCCHHHHHHHH-HHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTT------CCSCC
T ss_pred ccCChhhcCCCHHHHHHHH-HCCCCCCcHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHhcc------CCCce
Confidence 3468999999999999995 5699999999999999999999999999999999999999999887542 23567
Q ss_pred EEEEcCcHHHHHHHHHHHHHHHhhcCCcceEEEeCCCchHHHHHHHcCCCCEEEeCChHHHHHHhhcCCCcCCceeEEEE
Q 010357 96 ALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIF 175 (512)
Q Consensus 96 ~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lV~ 175 (512)
++|++|+++|+.|+.+.+..+....+ ..+....|+.........+. .++|+|+||+++.+.+.. ....+.++++||+
T Consensus 85 ~lil~Pt~~L~~q~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~-~~~iiv~Tp~~l~~~~~~-~~~~~~~~~~iVi 161 (224)
T 1qde_A 85 ALMLAPTRELALQIQKVVMALAFHMD-IKVHACIGGTSFVEDAEGLR-DAQIVVGTPGRVFDNIQR-RRFRTDKIKMFIL 161 (224)
T ss_dssp EEEECSSHHHHHHHHHHHHHHTTTSC-CCEEEECC----------CT-TCSEEEECHHHHHHHHHT-TSSCCTTCCEEEE
T ss_pred EEEEECCHHHHHHHHHHHHHHhcccC-ceEEEEeCCcchHHHHhcCC-CCCEEEECHHHHHHHHHh-CCcchhhCcEEEE
Confidence 99999999999999999999876544 44556666665555444443 389999999999998876 4556778999999
Q ss_pred cchhHHHhcCchHHHHHHHHHhccCCCCCCCCCCcccccceeEEEEEEecchhhHHHHHhhcCCCeEEccCCC
Q 010357 176 DEADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEK 248 (512)
Q Consensus 176 DEah~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~ 248 (512)
||||++.+.++...+..++..++. ..+++++|||+++.+..+...++.+|..+.+...
T Consensus 162 DEah~~~~~~~~~~l~~i~~~~~~---------------~~~~i~lSAT~~~~~~~~~~~~~~~p~~i~~~~~ 219 (224)
T 1qde_A 162 DEADEMLSSGFKEQIYQIFTLLPP---------------TTQVVLLSATMPNDVLEVTTKFMRNPVRILVKKD 219 (224)
T ss_dssp ETHHHHHHTTCHHHHHHHHHHSCT---------------TCEEEEEESSCCHHHHHHHHHHCSSCEEEC----
T ss_pred cChhHHhhhhhHHHHHHHHHhCCc---------------cCeEEEEEeecCHHHHHHHHHHCCCCEEEEecCC
Confidence 999999999999999999988765 7899999999999999999999999988876654
No 67
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.4e-33 Score=294.39 Aligned_cols=363 Identities=18% Similarity=0.254 Sum_probs=230.0
Q ss_pred CCcHHHHHHHHHhh----cCCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHH
Q 010357 41 APTKVQAQAIPVIL----SGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKL 116 (512)
Q Consensus 41 ~~~~~Q~~~~~~~~----~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 116 (512)
.++|||.+++..+. .++++|++.+||+|||++++..+...+.... ....+||||| .+|+.||.+++..+
T Consensus 236 ~Lr~yQ~egv~~l~~~~~~~~~~ILademGlGKT~~ai~~i~~l~~~~~------~~~~~LIV~P-~sll~qW~~E~~~~ 308 (800)
T 3mwy_W 236 ELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIFARR------QNGPHIIVVP-LSTMPAWLDTFEKW 308 (800)
T ss_dssp CCCTHHHHHHHHHHHHHTTTCCEEECCCTTSSTTHHHHHHHHHHHHHHS------CCSCEEEECC-TTTHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHhhcCCCEEEEeCCCcchHHHHHHHHHHHHHhcC------CCCCEEEEEC-chHHHHHHHHHHHH
Confidence 58999999997665 7889999999999999998888776654322 2455899999 57889999999998
Q ss_pred HhhcCCcceEEEeCCCchHHHHHH------------HcCCCCEEEeCChHHHHHHhhcCCCcCCceeEEEEcchhHHHhc
Q 010357 117 LHRFHWIVPGYVMGGENRSKEKAR------------LRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILEL 184 (512)
Q Consensus 117 ~~~~~~~~~~~~~~g~~~~~~~~~------------~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lV~DEah~l~~~ 184 (512)
+.. ..+....|+......... .....+|+|+|++.+......... ..+++||+||||++.+
T Consensus 309 ~p~---~~v~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~~~~l~~---~~w~~vIvDEaH~lkn- 381 (800)
T 3mwy_W 309 APD---LNCICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDRAELGS---IKWQFMAVDEAHRLKN- 381 (800)
T ss_dssp STT---CCEEECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECTTHHHHTHHHHHT---SEEEEEEETTGGGGCC-
T ss_pred CCC---ceEEEEeCCHHHHHHHHHHHhhccccccccccccCCEEEecHHHHHhhHHHHhc---CCcceeehhhhhhhcC-
Confidence 642 344444444443333322 123478999999999775433222 2689999999999865
Q ss_pred CchHHHHHHHHHhccCCCCCCCCCCcccccceeEEEEEEecch-hhHHHHHh-hcCCCeEEcc-----------------
Q 010357 185 GFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNE-KVNHLAKI-SLETPVLIGL----------------- 245 (512)
Q Consensus 185 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~-~~~~~~~~-~~~~~~~~~~----------------- 245 (512)
........+..++ ....+++||||-. ....+..+ .+-.|.....
T Consensus 382 -~~s~~~~~l~~l~----------------~~~rl~LTgTPiqN~l~el~~ll~fL~p~~~~~~~~~~~~~~~~~~~~~~ 444 (800)
T 3mwy_W 382 -AESSLYESLNSFK----------------VANRMLITGTPLQNNIKELAALVNFLMPGRFTIDQEIDFENQDEEQEEYI 444 (800)
T ss_dssp -SSSHHHHHHTTSE----------------EEEEEEECSCCCSSCSHHHHHHHHHHCSCCC---------CCTTHHHHHH
T ss_pred -chhHHHHHHHHhh----------------hccEEEeeCCcCCCCHHHHHHHHHHhCccccCchhhhcccccchhHHHHH
Confidence 3334444454443 5567999999842 22221111 1111111100
Q ss_pred --------------CCCc----CCCCccccccCCcccchhhhcc----CCCccccccc-c-ccc----------------
Q 010357 246 --------------DEKK----LPEDKSHVRFGSLESDVKEEVE----HPSTTMRSTT-E-DFK---------------- 285 (512)
Q Consensus 246 --------------~~~~----~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~-~-~~~---------------- 285 (512)
.... ++.................... .......... . ...
T Consensus 445 ~~L~~~l~p~~lRR~k~dv~~~LP~k~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~l~~l~~Lrk~~~hp~ 524 (800)
T 3mwy_W 445 HDLHRRIQPFILRRLKKDVEKSLPSKTERILRVELSDVQTEYYKNILTKNYSALTAGAKGGHFSLLNIMNELKKASNHPY 524 (800)
T ss_dssp HHHHHTTGGGEEECCGGGGTTTSCCEEEEEEEECCCHHHHHHHHHHHHHCCC----------CTHHHHHHHHHHHHHCGG
T ss_pred HHHHHHHhHHHhhhhHHhhhhccCCcEEEEEEeCCCHHHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHhcChh
Confidence 0000 0000000000000000000000 0000000000 0 000
Q ss_pred cc----cceeeeE------------EEecCCchHHHHHHHHHhhhccccCceEEEEeecchhhhhHHHhhhhhcCCCCCC
Q 010357 286 LP----AQLVQRY------------VKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQ 349 (512)
Q Consensus 286 ~~----~~~~~~~------------~~~~~~~k~~~l~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~ 349 (512)
+. ......+ .....+.|+..+..++..+. ..+.++||||.....+..+...|...
T Consensus 525 l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~K~~~L~~lL~~~~--~~g~kvLIFsq~~~~ld~L~~~L~~~------- 595 (800)
T 3mwy_W 525 LFDNAEERVLQKFGDGKMTRENVLRGLIMSSGKMVLLDQLLTRLK--KDGHRVLIFSQMVRMLDILGDYLSIK------- 595 (800)
T ss_dssp GSSSHHHHHCCCC----CCSHHHHHHHHHTCHHHHHHHHHHHHHT--TTTCCEEEEESCHHHHHHHHHHHHHH-------
T ss_pred hhcchHHHHHHhcccccccHHHHHHHhhhcChHHHHHHHHHHHHh--hCCCeEEEEechHHHHHHHHHHHHhC-------
Confidence 00 0000000 00113567777888887763 45689999999999999999999877
Q ss_pred ChhHHHhhhhccceeeecCCCCHHHHHHHHHhhhcCCC---cEEEeecccccCCCCCCCcEEEEeCCCCChhHHHHhhhh
Q 010357 350 PDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKK---ALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRVGR 426 (512)
Q Consensus 350 ~~~~~~~~~~~~~v~~l~g~~~~~~r~~~~~~f~~~~~---~vLvaT~~~~~Gldip~~~~VI~~~~p~s~~~~~Q~~GR 426 (512)
++.+..+||+++..+|..+++.|+++.. .+|++|.++++|+|++.+++||++++|+|+..+.|++||
T Consensus 596 ----------g~~~~~i~G~~~~~eR~~~i~~F~~~~~~~~v~LlSt~agg~GlNL~~a~~VI~~D~~wnp~~~~Qa~gR 665 (800)
T 3mwy_W 596 ----------GINFQRLDGTVPSAQRRISIDHFNSPDSNDFVFLLSTRAGGLGINLMTADTVVIFDSDWNPQADLQAMAR 665 (800)
T ss_dssp ----------TCCCEEESTTSCHHHHHHHHHTTSSTTCSCCCEEEEHHHHTTTCCCTTCCEEEESSCCSCSHHHHHHHTT
T ss_pred ----------CCCEEEEeCCCCHHHHHHHHHHhhCCCCCceEEEEecccccCCCCccccceEEEecCCCChhhHHHHHHH
Confidence 8889999999999999999999998654 489999999999999999999999999999999999999
Q ss_pred cccCCCCccEEE--ecCcc--chhHHHHHHH
Q 010357 427 TARLGERGDSLL--FLQPV--EMDYLQDLEK 453 (512)
Q Consensus 427 agR~g~~g~~~~--~~~~~--~~~~~~~l~~ 453 (512)
++|.|+...+.+ |+..+ |...+..+.+
T Consensus 666 ~~RiGQ~k~V~Vyrlv~~~TiEe~i~~~~~~ 696 (800)
T 3mwy_W 666 AHRIGQKNHVMVYRLVSKDTVEEEVLERARK 696 (800)
T ss_dssp TSCSSCCSCEEEEEEEETTSHHHHHHHHHHH
T ss_pred HHhcCCCceEEEEEEecCCCHHHHHHHHHHH
Confidence 999998876544 45443 3444544444
No 68
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=100.00 E-value=1.4e-32 Score=247.94 Aligned_cols=205 Identities=28% Similarity=0.477 Sum_probs=173.8
Q ss_pred cCCcccCCCCHHHHHHHHHhcCCCCCcHHHHHHHHHhhcCCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceE
Q 010357 17 SCSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFA 96 (512)
Q Consensus 17 ~~~~~~~~l~~~~~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (512)
..+|+++++++++.+.+. .+||..|+++|.++++.+++++++++++|||+|||++|+++++..+... ..+.++
T Consensus 13 ~~~f~~~~l~~~l~~~l~-~~g~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~~~~~------~~~~~~ 85 (220)
T 1t6n_A 13 SSGFRDFLLKPELLRAIV-DCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPV------TGQVSV 85 (220)
T ss_dssp -CCSTTSCCCHHHHHHHH-HTTCCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCC------TTCCCE
T ss_pred CCCHhhcCCCHHHHHHHH-HCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCchhhhhhHHHHHhhhcc------CCCEEE
Confidence 467999999999999995 5799999999999999999999999999999999999999999886431 124579
Q ss_pred EEEcCcHHHHHHHHHHHHHHHhhcCCcceEEEeCCCchHHHHHHHcC-CCCEEEeCChHHHHHHhhcCCCcCCceeEEEE
Q 010357 97 LVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRK-GISILVATPGRLLDHLKHTSSFLHTNLRWIIF 175 (512)
Q Consensus 97 lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lV~ 175 (512)
+|++|+++|+.|+.+.+..+....+...+..+.++.........+.. .++|+|+||+++.+.+.. ....+.+++++|+
T Consensus 86 lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~-~~~~~~~~~~lVi 164 (220)
T 1t6n_A 86 LVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARN-KSLNLKHIKHFIL 164 (220)
T ss_dssp EEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHHHHSCCSEEEECHHHHHHHHHT-TSSCCTTCCEEEE
T ss_pred EEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHHHhcCCCCEEEeCHHHHHHHHHh-CCCCcccCCEEEE
Confidence 99999999999999999998776545667778888777666665554 479999999999998876 4556778999999
Q ss_pred cchhHHHh-cCchHHHHHHHHHhccCCCCCCCCCCcccccceeEEEEEEecchhhHHHHHhhcCCCeEEc
Q 010357 176 DEADRILE-LGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIG 244 (512)
Q Consensus 176 DEah~l~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~ 244 (512)
||||++.+ .++...+..++..++. ..+++++|||+++.+..+.+.++.+|..+.
T Consensus 165 DEah~~~~~~~~~~~~~~i~~~~~~---------------~~~~i~~SAT~~~~~~~~~~~~~~~p~~i~ 219 (220)
T 1t6n_A 165 DECDKMLEQLDMRRDVQEIFRMTPH---------------EKQVMMFSATLSKEIRPVCRKFMQDPMEIF 219 (220)
T ss_dssp ESHHHHHSSHHHHHHHHHHHHTSCS---------------SSEEEEEESCCCTTTHHHHHTTCSSCEEEE
T ss_pred cCHHHHhcccCcHHHHHHHHHhCCC---------------cCeEEEEEeecCHHHHHHHHHHcCCCeEEe
Confidence 99999987 4677788888776654 789999999999999999999999887653
No 69
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=100.00 E-value=1.6e-32 Score=252.94 Aligned_cols=219 Identities=32% Similarity=0.522 Sum_probs=182.8
Q ss_pred ccCCcccCCCCHHHHHHHHHhcCCCCCcHHHHHHHHHhhcCCCEEEEccCCChHhHHHHHHHHHHHhhcCCC---CCCCC
Q 010357 16 ASCSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPR---IDRSS 92 (512)
Q Consensus 16 ~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~---~~~~~ 92 (512)
...+|+++++++.+.+.+ ..+||.+|+++|.++++.+++++++++++|||||||++|++|++..+...... .....
T Consensus 21 ~~~~f~~l~l~~~l~~~l-~~~g~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~ 99 (253)
T 1wrb_A 21 VIENFDELKLDPTIRNNI-LLASYQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTA 99 (253)
T ss_dssp CCCSSGGGSCCCSTTTTT-TTTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHTTCC------CCB
T ss_pred ccCCHhhCCCCHHHHHHH-HHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhhccccccccccC
Confidence 446799999999999999 46799999999999999999999999999999999999999999988654321 11233
Q ss_pred CceEEEEcCcHHHHHHHHHHHHHHHhhcCCcceEEEeCCCchHHHHHHHcCCCCEEEeCChHHHHHHhhcCCCcCCceeE
Q 010357 93 GTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRW 172 (512)
Q Consensus 93 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~ 172 (512)
+.++||++|+++|+.|+.+.+..+....+ ..+..+.||.........+..+++|+|+||+++.+.+.. ....+.++++
T Consensus 100 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~-~~~~~~~~~~ 177 (253)
T 1wrb_A 100 YPKCLILAPTRELAIQILSESQKFSLNTP-LRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFIEK-NKISLEFCKY 177 (253)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHHTTSS-CCEEEECSSSCSHHHHHHHSSCCSEEEECHHHHHHHHHT-TSBCCTTCCE
T ss_pred CceEEEEECCHHHHHHHHHHHHHHhccCC-ceEEEEECCCCHHHHHHHhCCCCCEEEECHHHHHHHHHc-CCCChhhCCE
Confidence 56899999999999999999999876544 455677788888888788888899999999999998876 4456778999
Q ss_pred EEEcchhHHHhcCchHHHHHHHHHhccCCCCCCCCCCcccccceeEEEEEEecchhhHHHHHhhcCCCeEEccCCC
Q 010357 173 IIFDEADRILELGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEK 248 (512)
Q Consensus 173 lV~DEah~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~ 248 (512)
||+||||++.+.+|...+..++..+... .....|++++|||+++.+..+...++.+|..+.+...
T Consensus 178 lViDEah~~~~~~~~~~~~~i~~~~~~~-----------~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~ 242 (253)
T 1wrb_A 178 IVLDEADRMLDMGFEPQIRKIIEESNMP-----------SGINRQTLMFSATFPKEIQKLAADFLYNYIFMTVGRV 242 (253)
T ss_dssp EEEETHHHHHHTTCHHHHHHHHHSSCCC-----------CGGGCEEEEEESSCCHHHHHHHHHHCSSCEEEEEC--
T ss_pred EEEeCHHHHHhCchHHHHHHHHhhccCC-----------CCCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEECCC
Confidence 9999999999999999999998854321 1125789999999999999999999999988776554
No 70
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=2.1e-31 Score=276.27 Aligned_cols=359 Identities=18% Similarity=0.221 Sum_probs=224.3
Q ss_pred CCcHHHHHHHHHhh---------cCCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcHHHHHHHHH
Q 010357 41 APTKVQAQAIPVIL---------SGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYE 111 (512)
Q Consensus 41 ~~~~~Q~~~~~~~~---------~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~ 111 (512)
.++|||.+++..+. .+.+.|+..+||+|||++++..+...+...... +....++|||+|+ +|+.||.+
T Consensus 55 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~~~~--~p~~~~~LiV~P~-sll~qW~~ 131 (644)
T 1z3i_X 55 VLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDC--KPEIDKVIVVSPS-SLVRNWYN 131 (644)
T ss_dssp TCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTTS--SCSCSCEEEEECH-HHHHHHHH
T ss_pred cccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHHHHHHHHHHHHHHhCccc--cCCCCcEEEEecH-HHHHHHHH
Confidence 58999999998764 346789999999999999988887766543211 1124569999997 88999999
Q ss_pred HHHHHHhhcCCcceEEEeCCCchHHH--HHH-Hc-----CCCCEEEeCChHHHHHHhhcCCCcCCceeEEEEcchhHHHh
Q 010357 112 ILHKLLHRFHWIVPGYVMGGENRSKE--KAR-LR-----KGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILE 183 (512)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~g~~~~~~--~~~-~~-----~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lV~DEah~l~~ 183 (512)
++.+++.. ...+..+.+|...... ... .. ...+|+|+|++.+..... .+....+++||+||||++.+
T Consensus 132 E~~~~~~~--~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~~---~l~~~~~~~vI~DEaH~ikn 206 (644)
T 1z3i_X 132 EVGKWLGG--RVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHAE---VLHKGKVGLVICDEGHRLKN 206 (644)
T ss_dssp HHHHHHGG--GCCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHHTT---TTTTSCCCEEEETTGGGCCT
T ss_pred HHHHHcCC--CeeEEEEeCCCHHHHHHHHHHHHHhcCCCCCCcEEEeeHHHHHhhHH---HhhcCCccEEEEECceecCC
Confidence 99998754 1233344444332211 111 11 136899999999976443 23334789999999999865
Q ss_pred cCchHHHHHHHHHhccCCCCCCCCCCcccccceeEEEEEEecchhh-H------------------HHHHhhcC------
Q 010357 184 LGFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKV-N------------------HLAKISLE------ 238 (512)
Q Consensus 184 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~-~------------------~~~~~~~~------ 238 (512)
. .......+..++ ..+.+++||||-.+- . .+...+..
T Consensus 207 ~--~~~~~~al~~l~----------------~~~rl~LTgTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~~~ 268 (644)
T 1z3i_X 207 S--DNQTYLALNSMN----------------AQRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQEFKKRFEIPILKGR 268 (644)
T ss_dssp T--CHHHHHHHHHHC----------------CSEEEEECSSCSGGGGGGCHHHHHHHHHHHHCCHHHHHHHTHHHHHHHH
T ss_pred h--hhHHHHHHHhcc----------------cCcEEEEecCcccCCHHHHHHHHHhhCCCcCCCHHHHHHhhcchhhhcC
Confidence 3 334444555554 457799999984321 0 01100000
Q ss_pred -----------------------CCeEEccCCCc----CCCCccccccCCcccchh---hh-------c-----------
Q 010357 239 -----------------------TPVLIGLDEKK----LPEDKSHVRFGSLESDVK---EE-------V----------- 270 (512)
Q Consensus 239 -----------------------~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~---~~-------~----------- 270 (512)
.+..+...... ++.....+.+........ .. .
T Consensus 269 ~~~~~~~~~~~~~~~~~~L~~~l~~~~lRR~k~~v~~~LP~k~~~~v~~~ls~~q~~lY~~~~~~~~~~~~~~~g~~~~~ 348 (644)
T 1z3i_X 269 DADASDKDRAAGEQKLQELISIVNRCLIRRTSDILSKYLPVKIEQVVCCNLTPLQKELYKLFLKQAKPVESLQTGKISVS 348 (644)
T ss_dssp STTCCSHHHHHHHHHHHHHHHHHHHHEECCCGGGGGGTSCCEEEEEEEECCCHHHHHHHHHHHHHHCGGGSSCTTCCCHH
T ss_pred CcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHhhhCCCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHhcCccchh
Confidence 00011100000 111100000000000000 00 0
Q ss_pred ------------cCCCcccc-------c-cccccccccceeeeEEEecCCchHHHHHHHHHhhhccccCceEEEEeecch
Q 010357 271 ------------EHPSTTMR-------S-TTEDFKLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCD 330 (512)
Q Consensus 271 ------------~~~~~~~~-------~-~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~lvf~~~~~ 330 (512)
.++..... . .......+............+.|+..+..++.... ...+.++||||+++.
T Consensus 349 ~l~~l~~Lrk~c~hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~l~~ll~~~~-~~~~~k~lIFs~~~~ 427 (644)
T 1z3i_X 349 SLSSITSLKKLCNHPALIYEKCLTGEEGFDGALDLFPQNYSTKAVEPQLSGKMLVLDYILAMTR-TTTSDKVVLVSNYTQ 427 (644)
T ss_dssp HHHHHHHHHHHHHCTHHHHHHHHHTCTTCTTGGGTSCSSCCSSSCCGGGSHHHHHHHHHHHHHH-HHCCCEEEEEESCHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHhcccchhhhHHhhccccccccccCcccChHHHHHHHHHHHHh-hcCCCEEEEEEccHH
Confidence 00000000 0 00000000000000011122456666666655442 234689999999999
Q ss_pred hhhhHHHhhhhhcCCCCCCChhHHHhhhhccceeeecCCCCHHHHHHHHHhhhcCCCc---EEEeecccccCCCCCCCcE
Q 010357 331 AVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKA---LLLSTDVAARGLDFPKVKC 407 (512)
Q Consensus 331 ~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~l~g~~~~~~r~~~~~~f~~~~~~---vLvaT~~~~~Gldip~~~~ 407 (512)
.++.+...|... ++.+..+||+++..+|..++++|+++... +|++|.++++|+|++++++
T Consensus 428 ~~~~l~~~l~~~-----------------g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~g~Glnl~~a~~ 490 (644)
T 1z3i_X 428 TLDLFEKLCRNR-----------------RYLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIGANR 490 (644)
T ss_dssp HHHHHHHHHHHH-----------------TCCEEEECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGGGSCTTCCCTTEEE
T ss_pred HHHHHHHHHHHC-----------------CCCEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEecccccCCcccccCCE
Confidence 999999999887 78899999999999999999999998764 8999999999999999999
Q ss_pred EEEeCCCCChhHHHHhhhhcccCCCCccEEE--ecCcc
Q 010357 408 IIQYDSAGEATEYVHRVGRTARLGERGDSLL--FLQPV 443 (512)
Q Consensus 408 VI~~~~p~s~~~~~Q~~GRagR~g~~g~~~~--~~~~~ 443 (512)
||++++|+|+..+.|++||++|.|+...+.+ ++..+
T Consensus 491 Vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~v~v~~lv~~~ 528 (644)
T 1z3i_X 491 LVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSTG 528 (644)
T ss_dssp EEECSCCSSHHHHHHHHTTSSSTTCCSCEEEEEEEETT
T ss_pred EEEECCCCCccHHHHHHHhhhhcCCCCceEEEEEEECC
Confidence 9999999999999999999999998876554 44443
No 71
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=100.00 E-value=3.7e-31 Score=263.47 Aligned_cols=338 Identities=17% Similarity=0.197 Sum_probs=236.9
Q ss_pred HHhcCCCCCcHHHHHHHHHhhcCCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcHHHHHHHHHHH
Q 010357 34 RERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEIL 113 (512)
Q Consensus 34 ~~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~ 113 (512)
+..+|+. |++.|.-+.-.+.+|+ |..+.||+|||+++.+|++-.... |..+.+++|+..||.|-++++
T Consensus 69 ~R~lg~r-~~dvQligg~~L~~G~--iaEM~TGEGKTLva~lp~~lnAL~---------G~~vhVvT~ndyLA~rdae~m 136 (822)
T 3jux_A 69 RRTLGMR-PFDVQVMGGIALHEGK--VAEMKTGEGKTLAATMPIYLNALI---------GKGVHLVTVNDYLARRDALWM 136 (822)
T ss_dssp HHHTSCC-CCHHHHHHHHHHHTTC--EEECCTTSCHHHHTHHHHHHHHTT---------SSCEEEEESSHHHHHHHHHHH
T ss_pred HHHhCCC-CcHHHHHHHHHHhCCC--hhhccCCCCccHHHHHHHHHHHhc---------CCceEEEeccHHHHHhHHHHH
Confidence 3445775 9999999988888885 899999999999999999755544 677999999999999999999
Q ss_pred HHHHhhcCCcceEEEeCC--------------------------------------------------CchHHHHHHHcC
Q 010357 114 HKLLHRFHWIVPGYVMGG--------------------------------------------------ENRSKEKARLRK 143 (512)
Q Consensus 114 ~~~~~~~~~~~~~~~~~g--------------------------------------------------~~~~~~~~~~~~ 143 (512)
..+...+|. .++++... .+.... ....
T Consensus 137 ~~l~~~Lgl-svg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~er--r~aY 213 (822)
T 3jux_A 137 GPVYLFLGL-RVGVINSLGKSYEVVWKNPDLARKAIEENWSVWPDGFNGEVLKEESMNKEAVEAFQVELKEITR--KEAY 213 (822)
T ss_dssp HHHHHHTTC-CEEEEETTTEEEEEEESSHHHHHHHHHTTCCSSCTTCCSSSCCGGGSCHHHHTTTCEECCBCCH--HHHH
T ss_pred HHHHHHhCC-EEEEEcCCCcccccccccchhhhhhhcccccccccccccccccccccccccchhccccCCHHHH--HHHh
Confidence 999998884 44555441 011111 1112
Q ss_pred CCCEEEeCChHH-HHHHhhc-----CCCcCCceeEEEEcchhHHHhcC----------------chHHHHHHHHHhc---
Q 010357 144 GISILVATPGRL-LDHLKHT-----SSFLHTNLRWIIFDEADRILELG----------------FGKEIEEILDILG--- 198 (512)
Q Consensus 144 ~~~Iiv~Tp~~l-~~~l~~~-----~~~~~~~~~~lV~DEah~l~~~~----------------~~~~~~~i~~~~~--- 198 (512)
.+||.++|..-| ++.|... .......+.+.|+||+|.++=.. .+..+..+...+.
T Consensus 214 ~~DItYgTn~EfgFDYLRDnm~~~~~~~vqR~~~~aIVDEvDSiLIDeArtPLiISg~~~~~~~~y~~~~~~v~~l~~~~ 293 (822)
T 3jux_A 214 LCDVTYGTNNEFGFDYLRDNLVLDYNDKVQRGHFYAIVDEADSVLIDEARTPLIISGPSKESPSVYRRFAQIAKKFVKDK 293 (822)
T ss_dssp HSSEEEEEHHHHHHHHHHHTSCSSTTSCCCCCCCEEEEETHHHHHTTGGGSCEEEECCCCSCHHHHHHHHHHTTSSCBTT
T ss_pred cCCCEEccCcchhhHhHHhhccCCHHHhccCCCCeEEEecccceeecCCCCCceeeCCCCCccHHHHHHHHHHHhcCcCC
Confidence 469999999776 4555432 22234678899999999854220 0011111111110
Q ss_pred -----------------------------------------------c-----CC----------------CCCC--CCC
Q 010357 199 -----------------------------------------------S-----RN----------------IGSI--GEG 208 (512)
Q Consensus 199 -----------------------------------------------~-----~~----------------~~~~--~~~ 208 (512)
. .+ .+.. +..
T Consensus 294 dy~vdek~~~v~lTe~G~~~~E~~l~i~nly~~~n~~l~~~i~~AL~A~~l~~~d~dYiV~dg~V~iVDe~TGR~m~grr 373 (822)
T 3jux_A 294 DFTVDEKARTIILTEEGVAKAEKIIGVENLYDPGNVSLLYHLINALKALHLFKKDVDYVVMNGEVIIVDEFTGRLLPGRR 373 (822)
T ss_dssp TEEECCSSSCEEECHHHHHHHHHHHTCSCTTSGGGHHHHHHHHHHHHHHHHSTTTSSEEEETTEEEECSSSSCSCCCSCC
T ss_pred cEEEEcccCeEEECHHHHHHHHHHhCCccccchhhhHHHHHHHHHHHHHHHHcCCCcEEEECCEEEEEECCCCcCCCCCc
Confidence 0 00 0000 000
Q ss_pred Cc-----------------------------ccccceeEEEEEEecchhhHHHHHhhcCCCeEEccCCCcCCCCcccccc
Q 010357 209 NE-----------------------------VSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDEKKLPEDKSHVRF 259 (512)
Q Consensus 209 ~~-----------------------------~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (512)
++ .-..-.++.+||+|.......+.+.+.-.... ++... +
T Consensus 374 ~s~GLHQaiEaKEgv~i~~e~~tla~IT~Qn~Fr~Y~kL~GMTGTa~te~~Ef~~iY~l~vv~--IPtnk-p-------- 442 (822)
T 3jux_A 374 YSGGLHQAIEAKEGVPIKEESITYATITFQNYFRMYEKLAGMTGTAKTEESEFVQVYGMEVVV--IPTHK-P-------- 442 (822)
T ss_dssp CGGGHHHHHHHHHSSCCCCCCCEEEEECHHHHHTTSSEEEEEESSCGGGHHHHHHHSCCCEEE--CCCSS-C--------
T ss_pred CchHHHHHHHHHcCCCCCCCcchhHHHHHHHHHHHhhHHeEECCCCchHHHHHHHHhCCeEEE--ECCCC-C--------
Confidence 00 00112368999999988777777766443222 22211 0
Q ss_pred CCcccchhhhccCCCccccccccccccccceeeeEEEecCCchHHHHHHHHHhhhccccCceEEEEeecchhhhhHHHhh
Q 010357 260 GSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLL 339 (512)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l 339 (512)
....-.+..+.....+|...+...+.... ..+.++||||+|+..++.++..|
T Consensus 443 --------------------------~~R~d~~d~vy~t~~eK~~al~~~I~~~~--~~gqpVLVFt~S~e~sE~Ls~~L 494 (822)
T 3jux_A 443 --------------------------MIRKDHDDLVFRTQKEKYEKIVEEIEKRY--KKGQPVLVGTTSIEKSELLSSML 494 (822)
T ss_dssp --------------------------CCCEECCCEEESSHHHHHHHHHHHHHHHH--HHTCCEEEEESSHHHHHHHHHHH
T ss_pred --------------------------cceeecCcEEEecHHHHHHHHHHHHHHHh--hCCCCEEEEECCHHHHHHHHHHH
Confidence 01111123444566778888888887652 34679999999999999999999
Q ss_pred hhhcCCCCCCChhHHHhhhhccceeeecCCCCHHHHHHHHHhhhcCCCcEEEeecccccCCCCC--------CCcEEEEe
Q 010357 340 SEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFP--------KVKCIIQY 411 (512)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~v~~l~g~~~~~~r~~~~~~f~~~~~~vLvaT~~~~~Gldip--------~~~~VI~~ 411 (512)
... ++++..+||+....++..+.+.++.| .|+|||+++++|+|++ +..+||++
T Consensus 495 ~~~-----------------Gi~~~vLhgkq~~rE~~ii~~ag~~g--~VtVATdmAgRGtDI~lg~~V~~~GglhVInt 555 (822)
T 3jux_A 495 KKK-----------------GIPHQVLNAKYHEKEAEIVAKAGQKG--MVTIATNMAGRGTDIKLGPGVAELGGLCIIGT 555 (822)
T ss_dssp HTT-----------------TCCCEEECSCHHHHHHHHHHHHHSTT--CEEEEETTTTTTCCCCCCTTTTTTTSCEEEES
T ss_pred HHC-----------------CCCEEEeeCCchHHHHHHHHhCCCCC--eEEEEcchhhCCcCccCCcchhhcCCCEEEec
Confidence 987 88899999997666666677777766 6999999999999998 66799999
Q ss_pred CCCCChhHHHHhhhhcccCCCCccEEEecCccc
Q 010357 412 DSAGEATEYVHRVGRTARLGERGDSLLFLQPVE 444 (512)
Q Consensus 412 ~~p~s~~~~~Q~~GRagR~g~~g~~~~~~~~~~ 444 (512)
+.|.+...|.||+||+||.|.+|.++.|++.+|
T Consensus 556 e~Pes~r~y~qriGRTGRqG~~G~a~~fvsleD 588 (822)
T 3jux_A 556 ERHESRRIDNQLRGRAGRQGDPGESIFFLSLED 588 (822)
T ss_dssp SCCSSHHHHHHHHTTSSCSSCCCEEEEEEETTS
T ss_pred CCCCCHHHHHHhhCccccCCCCeeEEEEechhH
Confidence 999999999999999999999999999999877
No 72
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=100.00 E-value=4.9e-32 Score=289.42 Aligned_cols=349 Identities=16% Similarity=0.152 Sum_probs=215.1
Q ss_pred CCcHHHHHHHHHhhc--------------CCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcHHHH
Q 010357 41 APTKVQAQAIPVILS--------------GRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELC 106 (512)
Q Consensus 41 ~~~~~Q~~~~~~~~~--------------~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~ 106 (512)
.||++|.+|++.+++ +++++++++||||||+++ ++++..+.. . ....++|||+|+++|+
T Consensus 271 ~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~-~~l~~ll~~-~-----~~~~rvLvlvpr~eL~ 343 (1038)
T 2w00_A 271 VMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTS-FKAARLATE-L-----DFIDKVFFVVDRKDLD 343 (1038)
T ss_dssp ECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHH-HHHHHHHTT-C-----TTCCEEEEEECGGGCC
T ss_pred cCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHH-HHHHHHHHh-c-----CCCceEEEEeCcHHHH
Confidence 499999999998875 368999999999999998 555555432 1 1246899999999999
Q ss_pred HHHHHHHHHHHhhcCCcceEEEeCCCchHHHHHHHc-CCCCEEEeCChHHHHHHhhcCCC-cCCceeEEEEcchhHHHhc
Q 010357 107 LQVYEILHKLLHRFHWIVPGYVMGGENRSKEKARLR-KGISILVATPGRLLDHLKHTSSF-LHTNLRWIIFDEADRILEL 184 (512)
Q Consensus 107 ~q~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~Iiv~Tp~~l~~~l~~~~~~-~~~~~~~lV~DEah~l~~~ 184 (512)
.|+.+.+..+... .+.++.+.......+. ...+|+|+||++|...+...... .+....+||+||||++..
T Consensus 344 ~Q~~~~f~~f~~~-------~v~~~~s~~~l~~~L~~~~~~IiVtTiqkl~~~l~~~~~~~~~~~~~lvIiDEAHrs~~- 415 (1038)
T 2w00_A 344 YQTMKEYQRFSPD-------SVNGSENTAGLKRNLDKDDNKIIVTTIQKLNNLMKAESDLPVYNQQVVFIFDECHRSQF- 415 (1038)
T ss_dssp HHHHHHHHTTSTT-------CSSSSCCCHHHHHHHHCSSCCEEEEEHHHHHHHHHHCCCCGGGGSCEEEEEESCCTTHH-
T ss_pred HHHHHHHHHhccc-------ccccccCHHHHHHHhcCCCCCEEEEEHHHHHHHHhcccchhccccccEEEEEccchhcc-
Confidence 9999999886532 1234555666666664 46899999999999887653322 345778999999999653
Q ss_pred CchHHHHHHHHHhccCCCCCCCCCCcccccceeEEEEEEecchhhH-----HHHHhhcCCCeE-Ecc----CCCcCCCCc
Q 010357 185 GFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVN-----HLAKISLETPVL-IGL----DEKKLPEDK 254 (512)
Q Consensus 185 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~-----~~~~~~~~~~~~-~~~----~~~~~~~~~ 254 (512)
+.....+...++ ..+++++||||..... .... .++.+.. +.+ ....+.+.
T Consensus 416 --~~~~~~I~~~~p----------------~a~~lgfTATP~~~~~~~~~~~t~~-~FG~~i~~Y~l~~AI~dg~l~p~- 475 (1038)
T 2w00_A 416 --GEAQKNLKKKFK----------------RYYQFGFTGTPIFPENALGSETTAS-VFGRELHSYVITDAIRDEKVLKF- 475 (1038)
T ss_dssp --HHHHHHHHHHCS----------------SEEEEEEESSCCCSTTCTTSCCHHH-HHCSEEEEECHHHHHHHTSSCCE-
T ss_pred --hHHHHHHHHhCC----------------cccEEEEeCCccccccchhhhHHHH-HhCCeeEeecHHHHHhCCCcCCe-
Confidence 233455656554 6799999999975321 1222 2222221 100 00000000
Q ss_pred cccccCCcccchhhhccCCCccccccccccccccceeeeEEEecCCchHHHHHHHHHhhhcc--------ccCceEEEEe
Q 010357 255 SHVRFGSLESDVKEEVEHPSTTMRSTTEDFKLPAQLVQRYVKVPCGSRLAVLLSILKHLFDT--------EVSQKLVVFF 326 (512)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~--------~~~~~~lvf~ 326 (512)
.+.+.......... . .. .. ... ...+.... ......+...+...+...+.. ..+.++||||
T Consensus 476 -~v~y~~v~~~~~~~-~-~e---~d-~~~---~~~i~~~~-~l~~~~ri~~I~~~Il~~~~~~~~~~~~~~~g~kamVf~ 544 (1038)
T 2w00_A 476 -KVDYNDVRPQFKSL-E-TE---TD-EKK---LSAAENQQ-AFLHPMRIQEITQYILNNFRQKTHRTFPGSKGFNAMLAV 544 (1038)
T ss_dssp -EEEECCCCGGGHHH-H-TC---CC-HHH---HHHTCSTT-TTTCHHHHHHHHHHHHHHHHHHTTCSSSSCCCCEEEEEE
T ss_pred -EEEEEeccchhhhc-c-cc---cc-HHH---HHHHHHHH-HhcCHHHHHHHHHHHHHHHHHhhhhhcccCCCCcEEEEE
Confidence 00010000000000 0 00 00 000 00000000 011223444444444333221 1346899999
Q ss_pred ecchhhhhHHHhhhhhcCCCCCCChhHHHhhhhccce-eeecCC----------C----------CH-------------
Q 010357 327 STCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKT-FRLHGN----------M----------KQ------------- 372 (512)
Q Consensus 327 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~v-~~l~g~----------~----------~~------------- 372 (512)
+++..|..+++.|.+......... ....+.++ ..+||+ + +.
T Consensus 545 ~S~~~A~~~~~~l~~~~~~~~~~~-----~~~~~~k~avv~s~~~~~~~~~~G~~~~e~~~~~~~~~~~r~~l~~~I~dy 619 (1038)
T 2w00_A 545 SSVDAAKAYYATFKRLQEEAANKS-----ATYKPLRIATIFSFAANEEQNAIGEISDETFDTSAMDSSAKEFLDAAIREY 619 (1038)
T ss_dssp SSHHHHHHHHHHHHHHHHHHTTTS-----SSCCCCCEEEECCCCC------CCCCCCCCSCGGGSCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhhhhhcccc-----cccccCcEEEEEeCCCccccccccccccccccccccchhHHHHHHHHHHHH
Confidence 999999999999987631000000 00002333 344532 2 22
Q ss_pred ----------------HHHHHHHHhhhcCCCcEEEeecccccCCCCCCCcEEEEeCCCCChhHHHHhhhhcccCCCC---
Q 010357 373 ----------------EDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRVGRTARLGER--- 433 (512)
Q Consensus 373 ----------------~~r~~~~~~f~~~~~~vLvaT~~~~~Gldip~~~~VI~~~~p~s~~~~~Q~~GRagR~g~~--- 433 (512)
..|..++++|++|+.+|||+|+++.+|+|+|.+ .+++++.|.+...|+|++||++|.+..
T Consensus 620 n~~f~~~~~~~~~~~~~~R~~i~~~Fk~g~i~ILIvvd~lltGfDiP~l-~tlylDkpl~~~~liQaIGRtnR~~~~~K~ 698 (1038)
T 2w00_A 620 NSHFKTNFSTDSNGFQNYYRDLAQRVKNQDIDLLIVVGMFLTGFDAPTL-NTLFVDKNLRYHGLMQAFSRTNRIYDATKT 698 (1038)
T ss_dssp HHHHTCCCCSSHHHHHHHHHHHHHHHHTTSSSEEEESSTTSSSCCCTTE-EEEEEESCCCHHHHHHHHHTTCCCCCTTCC
T ss_pred HHHhcccccccchhhhHHHHHHHHHHHcCCCeEEEEcchHHhCcCcccc-cEEEEccCCCccceeehhhccCcCCCCCCC
Confidence 147889999999999999999999999999999 678899999999999999999998753
Q ss_pred -ccEEEecC
Q 010357 434 -GDSLLFLQ 441 (512)
Q Consensus 434 -g~~~~~~~ 441 (512)
|.++.|+.
T Consensus 699 ~G~IVdf~~ 707 (1038)
T 2w00_A 699 FGNIVTFRD 707 (1038)
T ss_dssp SEEEEESSC
T ss_pred cEEEEEccc
Confidence 55666654
No 73
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=99.98 E-value=5e-32 Score=248.45 Aligned_cols=211 Identities=31% Similarity=0.508 Sum_probs=167.8
Q ss_pred cCCcccC----CCCHHHHHHHHHhcCCCCCcHHHHHHHHHhhcCCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCC
Q 010357 17 SCSFSSL----GLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSS 92 (512)
Q Consensus 17 ~~~~~~~----~l~~~~~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~ 92 (512)
..+|+++ ++++.+.+.+. .+||..|+++|.++++.+++|+++++++|||+|||++|++|++..+.... ..
T Consensus 24 ~~~f~~l~~~~~l~~~l~~~l~-~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~-----~~ 97 (245)
T 3dkp_A 24 IATFQQLDQEYKINSRLLQNIL-DAGFQMPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMQLKQPA-----NK 97 (245)
T ss_dssp CSSHHHHHHHHCCCHHHHHHHH-HTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHCSCC-----SS
T ss_pred ccCHHHhhhccCCCHHHHHHHH-HCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHhhcc-----cC
Confidence 3567776 89999999996 46999999999999999999999999999999999999999999886422 23
Q ss_pred CceEEEEcCcHHHHHHHHHHHHHHHhhcCCcceEEEeCCCchHHHH-HHHcCCCCEEEeCChHHHHHHhhcC-CCcCCce
Q 010357 93 GTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEK-ARLRKGISILVATPGRLLDHLKHTS-SFLHTNL 170 (512)
Q Consensus 93 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~Iiv~Tp~~l~~~l~~~~-~~~~~~~ 170 (512)
+.+++|++|+++|+.|+.+.+..++...+. .+..+.++....... .....+++|+|+||+++.+.+.... .+.+.++
T Consensus 98 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~ 176 (245)
T 3dkp_A 98 GFRALIISPTRELASQIHRELIKISEGTGF-RIHMIHKAAVAAKKFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLASV 176 (245)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSCC-CEECCCHHHHHHTTTSTTSCCCCCEEEECHHHHHHHHHSSSCSCCCTTC
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhcccCc-eEEEEecCccHHHHhhhhhcCCCCEEEECHHHHHHHHHhCCCCcccccC
Confidence 668999999999999999999998775542 222333222111111 1223468999999999999887643 4567889
Q ss_pred eEEEEcchhHHHhc---CchHHHHHHHHHhccCCCCCCCCCCcccccceeEEEEEEecchhhHHHHHhhcCCCeEEccCC
Q 010357 171 RWIIFDEADRILEL---GFGKEIEEILDILGSRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPVLIGLDE 247 (512)
Q Consensus 171 ~~lV~DEah~l~~~---~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~ 247 (512)
++||+||||++.++ ++...+..++..+... ..+++++|||+++.+..+...++.+|..+.+..
T Consensus 177 ~~lViDEah~~~~~~~~~~~~~~~~i~~~~~~~--------------~~~~~~~SAT~~~~v~~~~~~~l~~p~~i~~~~ 242 (245)
T 3dkp_A 177 EWLVVDESDKLFEDGKTGFRDQLASIFLACTSH--------------KVRRAMFSATFAYDVEQWCKLNLDNVISVSIGA 242 (245)
T ss_dssp CEEEESSHHHHHHHC--CHHHHHHHHHHHCCCT--------------TCEEEEEESSCCHHHHHHHHHHSSSCEEEEECC
T ss_pred cEEEEeChHHhcccccccHHHHHHHHHHhcCCC--------------CcEEEEEeccCCHHHHHHHHHhCCCCEEEEeCC
Confidence 99999999999884 5777777777665432 679999999999999999999999999887655
Q ss_pred C
Q 010357 248 K 248 (512)
Q Consensus 248 ~ 248 (512)
.
T Consensus 243 ~ 243 (245)
T 3dkp_A 243 R 243 (245)
T ss_dssp -
T ss_pred C
Confidence 3
No 74
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=99.96 E-value=4.9e-27 Score=238.29 Aligned_cols=134 Identities=21% Similarity=0.260 Sum_probs=111.0
Q ss_pred HHhcCCCCCcHHHHHHHHHhhcCCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcHHHHHHHHHHH
Q 010357 34 RERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEIL 113 (512)
Q Consensus 34 ~~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~ 113 (512)
+..+|+ +|+++|..+++.+++|+ +..++||+|||++|.+|++..... +..++|++||++||.|.++.+
T Consensus 73 ~R~lG~-~Pt~VQ~~~ip~LlqG~--IaeakTGeGKTLvf~Lp~~L~aL~---------G~qv~VvTPTreLA~Qdae~m 140 (997)
T 2ipc_A 73 KRYLGM-RHFDVQLIGGAVLHEGK--IAEMKTGEGKTLVATLAVALNALT---------GKGVHVVTVNDYLARRDAEWM 140 (997)
T ss_dssp HHHTCC-CCCHHHHHHHHHHHTTS--EEECCSTHHHHHHHHHHHHHHHTT---------CSCCEEEESSHHHHHHHHHHH
T ss_pred HHHhCC-CCcHHHHhhcccccCCc--eeeccCCCchHHHHHHHHHHHHHh---------CCCEEEEeCCHHHHHHHHHHH
Confidence 335699 69999999999999997 999999999999999999654443 567999999999999999999
Q ss_pred HHHHhhcCCcceEEEeCCCchHHHHHHHcCCCCEEEeCChHH-HHHHhhcC-----CCcCC---ceeEEEEcchhHHH
Q 010357 114 HKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRL-LDHLKHTS-----SFLHT---NLRWIIFDEADRIL 182 (512)
Q Consensus 114 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~Iiv~Tp~~l-~~~l~~~~-----~~~~~---~~~~lV~DEah~l~ 182 (512)
..++..++ +.++.++||.+... .....+++|+|+||++| ++++...- ...+. ++.++|+||+|+++
T Consensus 141 ~~l~~~lG-Lsv~~i~Gg~~~~~--r~~ay~~DIvyGTpgrlgfDyLrd~m~~~~~~l~~r~d~~l~~lIIDEaDsmL 215 (997)
T 2ipc_A 141 GPVYRGLG-LSVGVIQHASTPAE--RRKAYLADVTYVTNSELGFDYLRDNMAISPDQLVLRHDHPLHYAIIDEVDSIL 215 (997)
T ss_dssp HHHHHTTT-CCEEECCTTCCHHH--HHHHHTSSEEEEEHHHHHHHHHHHTSCSSTTTCCSCSSSSSCEEEETTHHHHT
T ss_pred HHHHHhcC-CeEEEEeCCCCHHH--HHHHcCCCEEEECchhhhhHHHHHhhhcchhhcccccCCCcceEEEechHHHH
Confidence 99998877 56677888876433 33334689999999999 88887642 24566 89999999999987
No 75
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.96 E-value=2.2e-27 Score=245.68 Aligned_cols=128 Identities=19% Similarity=0.284 Sum_probs=113.0
Q ss_pred CchHHHHHHHHHhhhccccCceEEEEeecchhhhhHHHhhhhhcCCCCCCChhHHHhhhhccceeeecCCCCHHHHHHHH
Q 010357 300 GSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTF 379 (512)
Q Consensus 300 ~~k~~~l~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~l~g~~~~~~r~~~~ 379 (512)
..+...+...+.... ..+.++||||+++..++.+++.|... ++.+..+||+|+..+|..++
T Consensus 422 ~~~~~~Ll~~l~~~~--~~~~~vlVf~~t~~~ae~L~~~L~~~-----------------gi~~~~lh~~~~~~~R~~~~ 482 (664)
T 1c4o_A 422 ENQILDLMEGIRERA--ARGERTLVTVLTVRMAEELTSFLVEH-----------------GIRARYLHHELDAFKRQALI 482 (664)
T ss_dssp TTHHHHHHHHHHHHH--HTTCEEEEECSSHHHHHHHHHHHHHT-----------------TCCEEEECTTCCHHHHHHHH
T ss_pred cchHHHHHHHHHHHH--hcCCEEEEEECCHHHHHHHHHHHHhc-----------------CCCceeecCCCCHHHHHHHH
Confidence 345566666665542 24679999999999999999999987 77899999999999999999
Q ss_pred HhhhcCCCcEEEeecccccCCCCCCCcEEEEeCC-----CCChhHHHHhhhhcccCCCCccEEEecCccchhH
Q 010357 380 GAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDS-----AGEATEYVHRVGRTARLGERGDSLLFLQPVEMDY 447 (512)
Q Consensus 380 ~~f~~~~~~vLvaT~~~~~Gldip~~~~VI~~~~-----p~s~~~~~Q~~GRagR~g~~g~~~~~~~~~~~~~ 447 (512)
+.|++|+.+|||||+++++|+|+|++++||+++. |.+..+|+||+||+||.+ .|.+++|+++.+...
T Consensus 483 ~~f~~g~~~VLvaT~~l~~GlDip~v~lVI~~d~d~~G~p~s~~~~iQr~GRagR~~-~G~~i~~~~~~~~~~ 554 (664)
T 1c4o_A 483 RDLRLGHYDCLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNA-RGEVWLYADRVSEAM 554 (664)
T ss_dssp HHHHTTSCSEEEESCCCCTTCCCTTEEEEEETTTTSCSGGGSHHHHHHHHGGGTTST-TCEEEEECSSCCHHH
T ss_pred HHhhcCCceEEEccChhhcCccCCCCCEEEEeCCcccCCCCCHHHHHHHHCccCcCC-CCEEEEEEcCCCHHH
Confidence 9999999999999999999999999999999997 899999999999999995 799999998866443
No 76
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.95 E-value=2.1e-26 Score=238.22 Aligned_cols=128 Identities=19% Similarity=0.305 Sum_probs=113.3
Q ss_pred CchHHHHHHHHHhhhccccCceEEEEeecchhhhhHHHhhhhhcCCCCCCChhHHHhhhhccceeeecCCCCHHHHHHHH
Q 010357 300 GSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTF 379 (512)
Q Consensus 300 ~~k~~~l~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~l~g~~~~~~r~~~~ 379 (512)
..+...+...+.... ..+.++||||+++..++.+++.|.+. ++++..+||+++..+|..++
T Consensus 428 ~~~~~~Ll~~l~~~~--~~~~~vlVf~~t~~~ae~L~~~L~~~-----------------gi~~~~lh~~~~~~~R~~~l 488 (661)
T 2d7d_A 428 EGQIDDLIGEIQARI--ERNERVLVTTLTKKMSEDLTDYLKEI-----------------GIKVNYLHSEIKTLERIEII 488 (661)
T ss_dssp TTHHHHHHHHHHHHH--TTTCEEEEECSSHHHHHHHHHHHHHT-----------------TCCEEEECTTCCHHHHHHHH
T ss_pred cchHHHHHHHHHHHH--hcCCeEEEEECCHHHHHHHHHHHHhc-----------------CCCeEEEeCCCCHHHHHHHH
Confidence 345556666665542 34579999999999999999999987 77899999999999999999
Q ss_pred HhhhcCCCcEEEeecccccCCCCCCCcEEEEeCC-----CCChhHHHHhhhhcccCCCCccEEEecCccchhH
Q 010357 380 GAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDS-----AGEATEYVHRVGRTARLGERGDSLLFLQPVEMDY 447 (512)
Q Consensus 380 ~~f~~~~~~vLvaT~~~~~Gldip~~~~VI~~~~-----p~s~~~~~Q~~GRagR~g~~g~~~~~~~~~~~~~ 447 (512)
+.|++|+.+|||||+++++|+|+|++++||+++. |.+..+|+||+||+||. ..|.+++|+++.+...
T Consensus 489 ~~f~~g~~~VLVaT~~l~~GlDip~v~lVi~~d~d~~G~p~s~~~~iQr~GRagR~-~~G~~i~~~~~~~~~~ 560 (661)
T 2d7d_A 489 RDLRLGKYDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-AEGRVIMYADKITKSM 560 (661)
T ss_dssp HHHHHTSCSEEEESCCCSTTCCCTTEEEEEETTTTCCTTTTSHHHHHHHHHTTTTS-TTCEEEEECSSCCHHH
T ss_pred HHHhcCCeEEEEecchhhCCcccCCCCEEEEeCcccccCCCCHHHHHHHhCcccCC-CCCEEEEEEeCCCHHH
Confidence 9999999999999999999999999999999997 99999999999999998 7899999999876443
No 77
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.95 E-value=3.5e-27 Score=201.09 Aligned_cols=153 Identities=29% Similarity=0.501 Sum_probs=140.2
Q ss_pred cccceeeeEEEecCCchHHHHHHHHHhhhccccCceEEEEeecchhhhhHHHhhhhhcCCCCCCChhHHHhhhhccceee
Q 010357 286 LPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFR 365 (512)
Q Consensus 286 ~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~ 365 (512)
.+.++.+.+..++.+.|...+.+++... .++++||||+++..++.+++.|... ++.+..
T Consensus 6 ~~~~i~~~~~~~~~~~K~~~L~~ll~~~----~~~~~lVF~~~~~~~~~l~~~L~~~-----------------~~~~~~ 64 (163)
T 2hjv_A 6 TTRNIEHAVIQVREENKFSLLKDVLMTE----NPDSCIIFCRTKEHVNQLTDELDDL-----------------GYPCDK 64 (163)
T ss_dssp CCCCEEEEEEECCGGGHHHHHHHHHHHH----CCSSEEEECSSHHHHHHHHHHHHHT-----------------TCCEEE
T ss_pred CcccceEEEEECChHHHHHHHHHHHHhc----CCCcEEEEECCHHHHHHHHHHHHHc-----------------CCcEEE
Confidence 3456888999999999999999888753 4679999999999999999999887 788999
Q ss_pred ecCCCCHHHHHHHHHhhhcCCCcEEEeecccccCCCCCCCcEEEEeCCCCChhHHHHhhhhcccCCCCccEEEecCccch
Q 010357 366 LHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRVGRTARLGERGDSLLFLQPVEM 445 (512)
Q Consensus 366 l~g~~~~~~r~~~~~~f~~~~~~vLvaT~~~~~Gldip~~~~VI~~~~p~s~~~~~Q~~GRagR~g~~g~~~~~~~~~~~ 445 (512)
+||+|+..+|..+++.|++|+.+|||||+++++|+|+|++++||+++.|+++..|+||+||+||.|++|.+++|+++.+.
T Consensus 65 ~hg~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gld~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~ 144 (163)
T 2hjv_A 65 IHGGMIQEDRFDVMNEFKRGEYRYLVATDVAARGIDIENISLVINYDLPLEKESYVHRTGRTGRAGNKGKAISFVTAFEK 144 (163)
T ss_dssp ECTTSCHHHHHHHHHHHHTTSCSEEEECGGGTTTCCCSCCSEEEESSCCSSHHHHHHHTTTSSCTTCCEEEEEEECGGGH
T ss_pred EeCCCCHHHHHHHHHHHHcCCCeEEEECChhhcCCchhcCCEEEEeCCCCCHHHHHHhccccCcCCCCceEEEEecHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHc-CCCCC
Q 010357 446 DYLQDLEKH-GVSLT 459 (512)
Q Consensus 446 ~~~~~l~~~-~~~~~ 459 (512)
..++.+++. +.+++
T Consensus 145 ~~~~~i~~~~~~~~~ 159 (163)
T 2hjv_A 145 RFLADIEEYIGFEIQ 159 (163)
T ss_dssp HHHHHHHHHHTSCCE
T ss_pred HHHHHHHHHHCCCcC
Confidence 999888874 55443
No 78
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.95 E-value=5.2e-27 Score=201.51 Aligned_cols=156 Identities=27% Similarity=0.470 Sum_probs=139.0
Q ss_pred ccceeeeEEEecCCchHHHHHHHHHhhhccccCceEEEEeecchhhhhHHHhhhhhcCCCCCCChhHHHhhhhccceeee
Q 010357 287 PAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRL 366 (512)
Q Consensus 287 ~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~l 366 (512)
+.++.+.+..++.++|...+.+++... .+.++||||+++..++.+++.|... ++++..+
T Consensus 3 ~~~i~q~~~~~~~~~K~~~L~~ll~~~----~~~~~lVF~~~~~~~~~l~~~L~~~-----------------~~~~~~~ 61 (172)
T 1t5i_A 3 LHGLQQYYVKLKDNEKNRKLFDLLDVL----EFNQVVIFVKSVQRCIALAQLLVEQ-----------------NFPAIAI 61 (172)
T ss_dssp --CCEEEEEECCGGGHHHHHHHHHHHS----CCSSEEEECSSHHHHHHHHHHHHHT-----------------TCCEEEE
T ss_pred cCCeEEEEEECChHHHHHHHHHHHHhC----CCCcEEEEECCHHHHHHHHHHHHhc-----------------CCCEEEE
Confidence 456788899999899999999888753 4679999999999999999999887 7889999
Q ss_pred cCCCCHHHHHHHHHhhhcCCCcEEEeecccccCCCCCCCcEEEEeCCCCChhHHHHhhhhcccCCCCccEEEecCcc-ch
Q 010357 367 HGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRVGRTARLGERGDSLLFLQPV-EM 445 (512)
Q Consensus 367 ~g~~~~~~r~~~~~~f~~~~~~vLvaT~~~~~Gldip~~~~VI~~~~p~s~~~~~Q~~GRagR~g~~g~~~~~~~~~-~~ 445 (512)
||+|+..+|..+++.|++|+.+|||||+++++|+|+|++++||++++|+++..|+||+||+||.|+.|.+++|+++. +.
T Consensus 62 hg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~~~~Vi~~d~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~ 141 (172)
T 1t5i_A 62 HRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDA 141 (172)
T ss_dssp CTTSCHHHHHHHHHHHHTTSCSEEEESSCCSTTCCGGGCSEEEESSCCSSHHHHHHHHHHHTGGGCCCEEEEEECSHHHH
T ss_pred ECCCCHHHHHHHHHHHHCCCCcEEEECCchhcCcchhhCCEEEEECCCCCHHHHHHHhcccccCCCCcEEEEEEcChhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999875 56
Q ss_pred hHHHHHHHc-CCCCCccCh
Q 010357 446 DYLQDLEKH-GVSLTEYPL 463 (512)
Q Consensus 446 ~~~~~l~~~-~~~~~~~~~ 463 (512)
..++.+.+. +..+++++.
T Consensus 142 ~~~~~l~~~~~~~~~~~~~ 160 (172)
T 1t5i_A 142 KILNDVQDRFEVNISELPD 160 (172)
T ss_dssp HHHHHHHHHHCCCEEECC-
T ss_pred HHHHHHHHHHhcchhhCCh
Confidence 777877764 666666653
No 79
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.94 E-value=1.2e-26 Score=198.25 Aligned_cols=153 Identities=26% Similarity=0.483 Sum_probs=132.4
Q ss_pred ceeeeEEEecCCc-hHHHHHHHHHhhhccccCceEEEEeecchhhhhHHHhhhhhcCCCCCCChhHHHhhhhccceeeec
Q 010357 289 QLVQRYVKVPCGS-RLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLH 367 (512)
Q Consensus 289 ~~~~~~~~~~~~~-k~~~l~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~l~ 367 (512)
++.+.+..++.++ |...+.+++... .++++||||+++..++.++..|... +..+..+|
T Consensus 3 ~i~~~~~~~~~~~~K~~~l~~ll~~~----~~~~~lVF~~~~~~~~~l~~~L~~~-----------------~~~~~~~~ 61 (165)
T 1fuk_A 3 GIKQFYVNVEEEEYKYECLTDLYDSI----SVTQAVIFCNTRRKVEELTTKLRND-----------------KFTVSAIY 61 (165)
T ss_dssp -CEEEEEEEESGGGHHHHHHHHHHHT----TCSCEEEEESSHHHHHHHHHHHHHT-----------------TCCEEEEC
T ss_pred CcEEEEEECCcchhHHHHHHHHHHhC----CCCCEEEEECCHHHHHHHHHHHHHc-----------------CCCEEEEE
Confidence 4677888888777 999988888763 4689999999999999999999887 77899999
Q ss_pred CCCCHHHHHHHHHhhhcCCCcEEEeecccccCCCCCCCcEEEEeCCCCChhHHHHhhhhcccCCCCccEEEecCccchhH
Q 010357 368 GNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRVGRTARLGERGDSLLFLQPVEMDY 447 (512)
Q Consensus 368 g~~~~~~r~~~~~~f~~~~~~vLvaT~~~~~Gldip~~~~VI~~~~p~s~~~~~Q~~GRagR~g~~g~~~~~~~~~~~~~ 447 (512)
|+|+..+|..+++.|++|+.+|||||+++++|+|+|++++||+++.|+++..|.||+||+||.|+.|.+++++++.+...
T Consensus 62 ~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~G~d~~~~~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~~ 141 (165)
T 1fuk_A 62 SDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGA 141 (165)
T ss_dssp TTSCHHHHHHHHHHHHTTSCSEEEEEGGGTTTCCCCSCSEEEESSCCSSGGGGGGSSCSCC-----CEEEEEEETTTHHH
T ss_pred CCCCHHHHHHHHHHHHcCCCEEEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEEEEcchHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred HHHHHHc-CCCCCccC
Q 010357 448 LQDLEKH-GVSLTEYP 462 (512)
Q Consensus 448 ~~~l~~~-~~~~~~~~ 462 (512)
+..+.+. +..+++++
T Consensus 142 ~~~~~~~~~~~~~~~~ 157 (165)
T 1fuk_A 142 MRELEKFYSTQIEELP 157 (165)
T ss_dssp HHHHHHHSSCCCEECC
T ss_pred HHHHHHHHccCccccC
Confidence 8888774 44444443
No 80
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.94 E-value=1.1e-26 Score=200.55 Aligned_cols=156 Identities=22% Similarity=0.394 Sum_probs=135.9
Q ss_pred ccceeeeEEEecCCc-hHHHHHHHHHhhhccccCceEEEEeecchhhhhHHHhhhhhcCCCCCCChhHHHhhhhccceee
Q 010357 287 PAQLVQRYVKVPCGS-RLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFR 365 (512)
Q Consensus 287 ~~~~~~~~~~~~~~~-k~~~l~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~ 365 (512)
+.++.+.+..++... |...+..++.. ..++++||||+++..++.++..|... +..+..
T Consensus 5 ~~~i~q~~~~~~~~~~K~~~L~~ll~~----~~~~~~lVF~~~~~~~~~l~~~L~~~-----------------~~~~~~ 63 (175)
T 2rb4_A 5 LNNIRQYYVLCEHRKDKYQALCNIYGS----ITIGQAIIFCQTRRNAKWLTVEMIQD-----------------GHQVSL 63 (175)
T ss_dssp BCCEEEEEEECSSHHHHHHHHHHHHTT----SCCSEEEEECSCHHHHHHHHHHHHTT-----------------TCCEEE
T ss_pred cCCceEEEEEcCChHhHHHHHHHHHHh----CCCCCEEEEECCHHHHHHHHHHHHHc-----------------CCcEEE
Confidence 567888888887755 88888877764 34679999999999999999999887 788999
Q ss_pred ecCCCCHHHHHHHHHhhhcCCCcEEEeecccccCCCCCCCcEEEEeCCC------CChhHHHHhhhhcccCCCCccEEEe
Q 010357 366 LHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSA------GEATEYVHRVGRTARLGERGDSLLF 439 (512)
Q Consensus 366 l~g~~~~~~r~~~~~~f~~~~~~vLvaT~~~~~Gldip~~~~VI~~~~p------~s~~~~~Q~~GRagR~g~~g~~~~~ 439 (512)
+||+|+..+|..+++.|++|+.+|||||+++++|+|+|++++||+++.| .+..+|+||+||+||.|+.|.+++|
T Consensus 64 ~~g~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~Gid~~~~~~Vi~~d~p~~~~~~~~~~~~~qr~GR~gR~g~~g~~~~~ 143 (175)
T 2rb4_A 64 LSGELTVEQRASIIQRFRDGKEKVLITTNVCARGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKKGLAFNM 143 (175)
T ss_dssp ECSSCCHHHHHHHHHHHHTTSCSEEEECCSCCTTTCCTTEEEEEESSCCC--CCSCCHHHHHHHHCBC----CCEEEEEE
T ss_pred EeCCCCHHHHHHHHHHHHcCCCeEEEEecchhcCCCcccCCEEEEeCCCCCccccCCHHHHHHHhcccccCCCCceEEEE
Confidence 9999999999999999999999999999999999999999999999999 9999999999999999999999999
Q ss_pred cCccchhHHHHHHHc-CCCCCccCh
Q 010357 440 LQPVEMDYLQDLEKH-GVSLTEYPL 463 (512)
Q Consensus 440 ~~~~~~~~~~~l~~~-~~~~~~~~~ 463 (512)
+++.+...++.+.+. +..++++++
T Consensus 144 ~~~~~~~~~~~i~~~~~~~~~~~~~ 168 (175)
T 2rb4_A 144 IEVDELPSLMKIQDHFNSSIKQLNA 168 (175)
T ss_dssp ECGGGHHHHHHHHHHHTCCCEEECS
T ss_pred EccchHHHHHHHHHHhcCcccccCC
Confidence 999998888888875 666555543
No 81
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.94 E-value=3.4e-26 Score=203.49 Aligned_cols=152 Identities=32% Similarity=0.486 Sum_probs=135.2
Q ss_pred eeeeEEEecCCchHHHHHHHHHhhhccccCceEEEEeecchhhhhHHHhhhhhcCCCCCCChhHHHhhhhccceeeecCC
Q 010357 290 LVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGN 369 (512)
Q Consensus 290 ~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~l~g~ 369 (512)
+.+....++...|...+.+++.. ..++++||||+++..++.+++.|... ++.+..+||+
T Consensus 6 ~~~~~~~~~~~~k~~~l~~ll~~----~~~~~~lVF~~~~~~~~~l~~~L~~~-----------------~~~~~~lhg~ 64 (212)
T 3eaq_A 6 YEEEAVPAPVRGRLEVLSDLLYV----ASPDRAMVFTRTKAETEEIAQGLLRL-----------------GHPAQALHGD 64 (212)
T ss_dssp BCCEEEECCTTSHHHHHHHHHHH----HCCSCEEEECSSHHHHHHHHHHHHHH-----------------TCCEEEECSS
T ss_pred eeeeEEeCCHHHHHHHHHHHHHh----CCCCeEEEEeCCHHHHHHHHHHHHHc-----------------CCCEEEEECC
Confidence 45566777888999999988874 34689999999999999999999887 7889999999
Q ss_pred CCHHHHHHHHHhhhcCCCcEEEeecccccCCCCCCCcEEEEeCCCCChhHHHHhhhhcccCCCCccEEEecCccchhHHH
Q 010357 370 MKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRVGRTARLGERGDSLLFLQPVEMDYLQ 449 (512)
Q Consensus 370 ~~~~~r~~~~~~f~~~~~~vLvaT~~~~~Gldip~~~~VI~~~~p~s~~~~~Q~~GRagR~g~~g~~~~~~~~~~~~~~~ 449 (512)
|+..+|..+++.|++|..+|||||+++++|+|+|++++||+++.|+++..|+||+||+||.|++|.|++|+++.+...++
T Consensus 65 ~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gidi~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~l~~~~~~~~~~ 144 (212)
T 3eaq_A 65 LSQGERERVLGAFRQGEVRVLVATDVAARGLDIPQVDLVVHYRLPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVE 144 (212)
T ss_dssp SCHHHHHHHHHHHHSSSCCEEEECTTTTCSSSCCCBSEEEESSCCSSHHHHHHHHTTBCCCC--BEEEEEECGGGHHHHH
T ss_pred CCHHHHHHHHHHHHCCCCeEEEecChhhcCCCCccCcEEEECCCCcCHHHHHHHhcccCCCCCCCeEEEEEchhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988888
Q ss_pred HHHHc-CCCCCccC
Q 010357 450 DLEKH-GVSLTEYP 462 (512)
Q Consensus 450 ~l~~~-~~~~~~~~ 462 (512)
.+++. +..+.+++
T Consensus 145 ~i~~~~~~~~~~~~ 158 (212)
T 3eaq_A 145 ALERAVGRRFKRVN 158 (212)
T ss_dssp HHHHHHSSCCEECC
T ss_pred HHHHHhcCcCeecC
Confidence 88874 44444443
No 82
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.94 E-value=1.9e-26 Score=201.03 Aligned_cols=145 Identities=31% Similarity=0.505 Sum_probs=127.7
Q ss_pred ccceeeeEEEecCCchHHHHHHHHHhhhccccCceEEEEeecchhhhhHHHhhhhhcCCCCCCChhHHHhhhhccceeee
Q 010357 287 PAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRL 366 (512)
Q Consensus 287 ~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~l 366 (512)
..++.+.+..++.+.|...+.+++.. .+.++||||+++..++.+++.|... ++.+..+
T Consensus 27 ~~~i~q~~~~~~~~~K~~~L~~~l~~-----~~~~~lVF~~~~~~~~~l~~~L~~~-----------------g~~~~~l 84 (191)
T 2p6n_A 27 SLDVIQEVEYVKEEAKMVYLLECLQK-----TPPPVLIFAEKKADVDAIHEYLLLK-----------------GVEAVAI 84 (191)
T ss_dssp -CCSEEEEEECCGGGHHHHHHHHHTT-----SCSCEEEECSCHHHHHHHHHHHHHH-----------------TCCEEEE
T ss_pred CcCceEEEEEcChHHHHHHHHHHHHh-----CCCCEEEEECCHHHHHHHHHHHHHc-----------------CCcEEEE
Confidence 45678888888888999888887764 2468999999999999999999887 7889999
Q ss_pred cCCCCHHHHHHHHHhhhcCCCcEEEeecccccCCCCCCCcEEEEeCCCCChhHHHHhhhhcccCCCCccEEEecCcc-ch
Q 010357 367 HGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRVGRTARLGERGDSLLFLQPV-EM 445 (512)
Q Consensus 367 ~g~~~~~~r~~~~~~f~~~~~~vLvaT~~~~~Gldip~~~~VI~~~~p~s~~~~~Q~~GRagR~g~~g~~~~~~~~~-~~ 445 (512)
||+|+..+|..+++.|++|+.+|||||+++++|+|+|++++||+|++|+++..|+||+||+||.|++|.+++|+++. +.
T Consensus 85 hg~~~~~~R~~~l~~F~~g~~~vLvaT~~~~~Gldi~~v~~VI~~d~p~~~~~~~qr~GR~gR~g~~g~~i~l~~~~~~~ 164 (191)
T 2p6n_A 85 HGGKDQEERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGCSGNTGIATTFINKACDE 164 (191)
T ss_dssp CTTSCHHHHHHHHHHHHHTSCSEEEECHHHHTTCCCCCCSEEEESSCCSSHHHHHHHHTTSCC---CCEEEEEECTTSCH
T ss_pred eCCCCHHHHHHHHHHHhcCCCEEEEEcCchhcCCCcccCCEEEEeCCCCCHHHHHHHhCccccCCCCcEEEEEEcCchhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999976 55
Q ss_pred hHHHHHHH
Q 010357 446 DYLQDLEK 453 (512)
Q Consensus 446 ~~~~~l~~ 453 (512)
..++.+.+
T Consensus 165 ~~~~~l~~ 172 (191)
T 2p6n_A 165 SVLMDLKA 172 (191)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 56555554
No 83
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.94 E-value=2.3e-26 Score=199.68 Aligned_cols=149 Identities=30% Similarity=0.467 Sum_probs=122.6
Q ss_pred ccccceeeeEEEecCCchHHHHHHHHHhhhccccCceEEEEeecchhhhhHHHhhhhhcCCCCCCChhHHHhhhhcccee
Q 010357 285 KLPAQLVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTF 364 (512)
Q Consensus 285 ~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~v~ 364 (512)
..+.++.+.+..++.+.|...+.+++... .++.++||||+++..++.+++.|... ++.+.
T Consensus 15 ~~~~~i~q~~~~v~~~~K~~~L~~ll~~~---~~~~k~lVF~~~~~~~~~l~~~L~~~-----------------g~~~~ 74 (185)
T 2jgn_A 15 STSENITQKVVWVEESDKRSFLLDLLNAT---GKDSLTLVFVETKKGADSLEDFLYHE-----------------GYACT 74 (185)
T ss_dssp -CCTTEEEEEEECCGGGHHHHHHHHHHHC----CCSCEEEEESCHHHHHHHHHHHHHT-----------------TCCEE
T ss_pred CCCCCceEEEEEeCcHHHHHHHHHHHHhc---CCCCeEEEEECCHHHHHHHHHHHHHc-----------------CCceE
Confidence 34677889999999999999999988863 35689999999999999999999887 78899
Q ss_pred eecCCCCHHHHHHHHHhhhcCCCcEEEeecccccCCCCCCCcEEEEeCCCCChhHHHHhhhhcccCCCCccEEEecCccc
Q 010357 365 RLHGNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRVGRTARLGERGDSLLFLQPVE 444 (512)
Q Consensus 365 ~l~g~~~~~~r~~~~~~f~~~~~~vLvaT~~~~~Gldip~~~~VI~~~~p~s~~~~~Q~~GRagR~g~~g~~~~~~~~~~ 444 (512)
.+||+|+..+|..+++.|++|+.+|||||+++++|+|+|++++||++++|+++..|+||+||+||.|+.|.+++|+++.+
T Consensus 75 ~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~~~~VI~~d~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~ 154 (185)
T 2jgn_A 75 SIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERN 154 (185)
T ss_dssp EEC--------CHHHHHHHHTSSSEEEEEC------CCCSBSEEEESSCCSSHHHHHHHHTTBCCTTSCEEEEEEECGGG
T ss_pred EEeCCCCHHHHHHHHHHHHcCCCeEEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHccccCCCCCCcEEEEEEchhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred hhHHHHHHH
Q 010357 445 MDYLQDLEK 453 (512)
Q Consensus 445 ~~~~~~l~~ 453 (512)
...++.+.+
T Consensus 155 ~~~~~~l~~ 163 (185)
T 2jgn_A 155 INITKDLLD 163 (185)
T ss_dssp GGGHHHHHH
T ss_pred HHHHHHHHH
Confidence 777776665
No 84
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.93 E-value=3.5e-25 Score=205.83 Aligned_cols=152 Identities=32% Similarity=0.488 Sum_probs=133.3
Q ss_pred eeeeEEEecCCchHHHHHHHHHhhhccccCceEEEEeecchhhhhHHHhhhhhcCCCCCCChhHHHhhhhccceeeecCC
Q 010357 290 LVQRYVKVPCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGN 369 (512)
Q Consensus 290 ~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~l~g~ 369 (512)
+.+.++.++...|...+..++... .++++||||+++..++.++..|... ++.+..+||+
T Consensus 3 v~~~~i~~~~~~K~~~L~~ll~~~----~~~~~LVF~~t~~~~~~l~~~L~~~-----------------g~~~~~lhg~ 61 (300)
T 3i32_A 3 YEEEAVPAPVRGRLEVLSDLLYVA----SPDRAMVFTRTKAETEEIAQGLLRL-----------------GHPAQALHGD 61 (300)
T ss_dssp SEEEEEECCSSSHHHHHHHHHHHH----CCSSEEEECSSHHHHHHHHHHHHTT-----------------TCCEEEECSC
T ss_pred eEEEEEECCHHHHHHHHHHHHHhc----CCCCEEEEECCHHHHHHHHHHHHhC-----------------CCCEEEEeCC
Confidence 467788888899999999988764 3789999999999999999999887 7889999999
Q ss_pred CCHHHHHHHHHhhhcCCCcEEEeecccccCCCCCCCcEEEEeCCCCChhHHHHhhhhcccCCCCccEEEecCccchhHHH
Q 010357 370 MKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRVGRTARLGERGDSLLFLQPVEMDYLQ 449 (512)
Q Consensus 370 ~~~~~r~~~~~~f~~~~~~vLvaT~~~~~Gldip~~~~VI~~~~p~s~~~~~Q~~GRagR~g~~g~~~~~~~~~~~~~~~ 449 (512)
|++.+|..+++.|++|..+|||||+++++|+|+|++++||+++.|.+...|+||+||+||.|++|.|++|+++.+...++
T Consensus 62 l~~~~r~~~~~~f~~g~~~vLVaT~va~~Gidi~~v~~VI~~d~p~s~~~y~Qr~GRagR~g~~G~~i~l~~~~e~~~~~ 141 (300)
T 3i32_A 62 MSQGERERVMGAFRQGEVRVLVATDVAARGLDIPQVDLVVHYRMPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVE 141 (300)
T ss_dssp CCTHHHHHHHHHHHHTSCCEEEECSTTTCSTTCCCCSEEEESSCCSSTTHHHHHHTCCC-----CEEEEEECSSTHHHHH
T ss_pred CCHHHHHHHHHHhhcCCceEEEEechhhcCccccceeEEEEcCCCCCHHHHHHHccCcCcCCCCceEEEEeChHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988888
Q ss_pred HHHHc-CCCCCccC
Q 010357 450 DLEKH-GVSLTEYP 462 (512)
Q Consensus 450 ~l~~~-~~~~~~~~ 462 (512)
.+++. +..+.+++
T Consensus 142 ~ie~~~~~~~~~~~ 155 (300)
T 3i32_A 142 ALERAVGRRFKRVN 155 (300)
T ss_dssp HHHHHHTCCCEECC
T ss_pred HHHHHhCCcceEeC
Confidence 88874 44444443
No 85
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.86 E-value=1.5e-26 Score=198.71 Aligned_cols=145 Identities=27% Similarity=0.459 Sum_probs=130.0
Q ss_pred ceeeeEEEecC-CchHHHHHHHHHhhhccccCceEEEEeecchhhhhHHHhhhhhcCCCCCCChhHHHhhhhccceeeec
Q 010357 289 QLVQRYVKVPC-GSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLH 367 (512)
Q Consensus 289 ~~~~~~~~~~~-~~k~~~l~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~l~ 367 (512)
++.+.+..++. +.|...+.+++.. ..++++||||+++..++.+++.|... +..+..+|
T Consensus 3 ~i~~~~~~~~~~~~k~~~l~~ll~~----~~~~~~iVF~~~~~~~~~l~~~L~~~-----------------~~~~~~~~ 61 (170)
T 2yjt_D 3 KIHQWYYRADDLEHKTALLVHLLKQ----PEATRSIVFVRKRERVHELANWLREA-----------------GINNCYLE 61 (170)
Confidence 34566666666 7788877777764 34679999999999999999999887 77899999
Q ss_pred CCCCHHHHHHHHHhhhcCCCcEEEeecccccCCCCCCCcEEEEeCCCCChhHHHHhhhhcccCCCCccEEEecCccchhH
Q 010357 368 GNMKQEDRRTTFGAFKTEKKALLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRVGRTARLGERGDSLLFLQPVEMDY 447 (512)
Q Consensus 368 g~~~~~~r~~~~~~f~~~~~~vLvaT~~~~~Gldip~~~~VI~~~~p~s~~~~~Q~~GRagR~g~~g~~~~~~~~~~~~~ 447 (512)
|+|+..+|..+++.|++|+.+|||||+++++|+|+|++++||+++.|+++..|+||+||+||.|+.|.+++++++.+...
T Consensus 62 g~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gid~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~ 141 (170)
T 2yjt_D 62 GEMVQGKRNEAIKRLTEGRVNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLL 141 (170)
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred HHHHHHc
Q 010357 448 LQDLEKH 454 (512)
Q Consensus 448 ~~~l~~~ 454 (512)
++.+.+.
T Consensus 142 ~~~~~~~ 148 (170)
T 2yjt_D 142 LGKVGRY 148 (170)
Confidence 8777763
No 86
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.91 E-value=3.8e-24 Score=192.16 Aligned_cols=179 Identities=20% Similarity=0.166 Sum_probs=116.4
Q ss_pred CCCCCcHHHHHHHHHhhcCCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcHHHHHH-HHHHHHHH
Q 010357 38 GFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQ-VYEILHKL 116 (512)
Q Consensus 38 ~~~~~~~~Q~~~~~~~~~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q-~~~~~~~~ 116 (512)
+...|+++|.++++.+++++++++.+|||+|||+++++++...+...... ..+.+++|++|+++|+.| +.+.+..+
T Consensus 30 ~~~~l~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~---~~~~~~lil~p~~~L~~q~~~~~~~~~ 106 (216)
T 3b6e_A 30 PELQLRPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYIAKDHLDKKKKA---SEPGKVIVLVNKVLLVEQLFRKEFQPF 106 (216)
T ss_dssp CCCCCCHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHHT---TCCCCEEEEESSHHHHHHHHHHTHHHH
T ss_pred CCCCchHHHHHHHHHHhcCCCEEEEcCCCCCHHHHHHHHHHHHHhhcccc---cCCCcEEEEECHHHHHHHHHHHHHHHH
Confidence 34469999999999999999999999999999999999998877553211 135679999999999999 77888887
Q ss_pred HhhcCCcceEEEeCCCchHHHHHHHcCCCCEEEeCChHHHHHHhhcCC-----CcCCceeEEEEcchhHHHhcCchHHHH
Q 010357 117 LHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSS-----FLHTNLRWIIFDEADRILELGFGKEIE 191 (512)
Q Consensus 117 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~-----~~~~~~~~lV~DEah~l~~~~~~~~~~ 191 (512)
... ...+..+.++.............++|+|+||+++...+..... ..+.++++||+||||++...++...+.
T Consensus 107 ~~~--~~~v~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIiDEah~~~~~~~~~~~~ 184 (216)
T 3b6e_A 107 LKK--WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIM 184 (216)
T ss_dssp HTT--TSCEEECCC---CCCCHHHHHHHCSEEEEEHHHHHHHHHC-------CCCGGGCSEEEETTC-------CHHHHH
T ss_pred hcc--CceEEEEeCCcccchhHHhhccCCCEEEECHHHHHHHHhccCcccccccchhcccEEEEECchhhccCCcHHHHH
Confidence 653 2344555555443333333344679999999999998876432 456789999999999998765554442
Q ss_pred -HHHHHh-ccCCCCCCCCCCcccccceeEEEEEEe
Q 010357 192 -EILDIL-GSRNIGSIGEGNEVSNVKRQNLLLSAT 224 (512)
Q Consensus 192 -~i~~~~-~~~~~~~~~~~~~~~~~~~~~i~~SAT 224 (512)
.++... +..... .......+.++++++|||
T Consensus 185 ~~~~~~~~~~~~~~---~~~~~~~~~~~~l~lSAT 216 (216)
T 3b6e_A 185 RHYLMQKLKNNRLK---KENKPVIPLPQILGLTAS 216 (216)
T ss_dssp HHHHHHHHHHHHHH---HTTCCCCCCCEEEEEECC
T ss_pred HHHHHHhccccccc---ccccCCCCcceEEEeecC
Confidence 322221 100000 000011127899999998
No 87
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=99.89 E-value=3e-22 Score=203.31 Aligned_cols=114 Identities=15% Similarity=0.233 Sum_probs=71.1
Q ss_pred HHHHHHHHhhhccccCceEEEEeecchhhhhHHHhhhhhcCCCCCCChhHHHhhhhccceeeecCCCCHHHHHHHHHhhh
Q 010357 304 AVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFK 383 (512)
Q Consensus 304 ~~l~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~l~g~~~~~~r~~~~~~f~ 383 (512)
..+.+.+..+... .+++++||++|...++.+++.+... ++ ..+|.. ..|..+++.|+
T Consensus 370 ~~~~~~l~~~~~~-~~g~~lvff~S~~~~~~v~~~l~~~-------------------~~-~~q~~~--~~~~~~l~~f~ 426 (540)
T 2vl7_A 370 PIYSILLKRIYEN-SSKSVLVFFPSYEMLESVRIHLSGI-------------------PV-IEENKK--TRHEEVLELMK 426 (540)
T ss_dssp HHHHHHHHHHHHT-CSSEEEEEESCHHHHHHHHTTCTTS-------------------CE-EESTTT--CCHHHHHHHHH
T ss_pred HHHHHHHHHHHHh-CCCCEEEEeCCHHHHHHHHHHhccC-------------------ce-EecCCC--CcHHHHHHHHh
Confidence 4455555555433 4679999999999999998887532 33 345553 56889999999
Q ss_pred cCCCcEEE--eecccccCCCCCC----CcEEEEeCCCCCh------------------------------hHHHHhhhhc
Q 010357 384 TEKKALLL--STDVAARGLDFPK----VKCIIQYDSAGEA------------------------------TEYVHRVGRT 427 (512)
Q Consensus 384 ~~~~~vLv--aT~~~~~Gldip~----~~~VI~~~~p~s~------------------------------~~~~Q~~GRa 427 (512)
++. .||+ ||..+++|||+|+ +++||+++.|... ..+.|.+||+
T Consensus 427 ~~~-~il~~V~~~~~~EGiD~~~~~~~~~~Vii~~lPf~~~~d~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Q~~GR~ 505 (540)
T 2vl7_A 427 TGK-YLVMLVMRAKESEGVEFREKENLFESLVLAGLPYPNVSDDMVRKRIERLSKLTGKDEDSIIHDLTAIVIKQTIGRA 505 (540)
T ss_dssp TSC-CEEEEEC---------------CEEEEEEESCCCCCTTSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCC-eEEEEEecCceecceecCCCcccccEEEEECCCCCCCCCHHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHhCCc
Confidence 864 6777 7899999999997 8899999988421 2346999999
Q ss_pred ccCCCCccEEEecC
Q 010357 428 ARLGERGDSLLFLQ 441 (512)
Q Consensus 428 gR~g~~g~~~~~~~ 441 (512)
-|....--++++++
T Consensus 506 iR~~~D~g~v~llD 519 (540)
T 2vl7_A 506 FRDPNDYVKIYLCD 519 (540)
T ss_dssp CCSTTCCCEEEEES
T ss_pred ccCCCccEEEEEEc
Confidence 99855433444444
No 88
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=99.88 E-value=1.9e-20 Score=190.95 Aligned_cols=132 Identities=17% Similarity=0.114 Sum_probs=95.9
Q ss_pred CCCCCcHHHHHHHHH----hhcCCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcHHHHHHHHHHH
Q 010357 38 GFEAPTKVQAQAIPV----ILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEIL 113 (512)
Q Consensus 38 ~~~~~~~~Q~~~~~~----~~~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~ 113 (512)
||. |||+|.+++.. +.+++++++.+|||+|||++|++|++.. +.+++|++||++|+.|+.+.+
T Consensus 1 ~~~-~r~~Q~~~~~~v~~~l~~~~~~~~~a~TGtGKT~~~l~p~l~~------------~~~v~i~~pt~~l~~q~~~~~ 67 (551)
T 3crv_A 1 MVK-LRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFSLLVSLEV------------KPKVLFVVRTHNEFYPIYRDL 67 (551)
T ss_dssp CCS-CCHHHHHHHHHHHHHHHTTCEEEEECCTTSSHHHHHHHHHHHH------------CSEEEEEESSGGGHHHHHHHH
T ss_pred CCC-CCHHHHHHHHHHHHHHHcCCcEEEECCCCccHHHHHHHHHHhC------------CCeEEEEcCCHHHHHHHHHHH
Confidence 464 99999997764 4478999999999999999999999872 667999999999999999988
Q ss_pred HHHHhhcCCcceEEEeCCCc---------------------------------hHHHH------------------HHHc
Q 010357 114 HKLLHRFHWIVPGYVMGGEN---------------------------------RSKEK------------------ARLR 142 (512)
Q Consensus 114 ~~~~~~~~~~~~~~~~~g~~---------------------------------~~~~~------------------~~~~ 142 (512)
..+....+ .....+.|+.. ..... ....
T Consensus 68 ~~l~~~~~-~~~~~l~gr~~~c~~~~~~~~~~~~~c~~c~~~~~~~~~g~~~~~~~~~~~~~~~G~~~~~Cpy~~ar~~~ 146 (551)
T 3crv_A 68 TKIREKRN-ITFSFLVGKPSSCLYAEKGAESEDIPCKYCELKGSIVEVKTDDSPLSLVKKLKKDGLQDKFCPYYSLLNSL 146 (551)
T ss_dssp TTCCCSSC-CCEEECCCHHHHCTTBCTTCCGGGCCGGGCTTTTCCCCCCCCSCHHHHHHHHHHHHHHHTCCHHHHHHHHG
T ss_pred HHHhhhcC-ccEEEEccccccCcCchhcCCCcccccCCCCCccccccccccCCHHHHHHHHHHcCCcCCcCccHHHHhhh
Confidence 88754432 22333332111 11111 2223
Q ss_pred CCCCEEEeCChHHHHHHhhcCCCcCCceeEEEEcchhHHHh
Q 010357 143 KGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILE 183 (512)
Q Consensus 143 ~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lV~DEah~l~~ 183 (512)
..++|||+|+..|++...+..........++||||||++.+
T Consensus 147 ~~adIVV~~~~~l~~~~~~~~~~~~~~~~~vIiDEAHnl~d 187 (551)
T 3crv_A 147 YKADVIALTYPYFFIDRYREFIDIDLREYMIVIDEAHNLDK 187 (551)
T ss_dssp GGCSEEEEETHHHHCHHHHTTSCCCSTTEEEEETTGGGGGG
T ss_pred hcCCEEEeCchHhcCHHHHHhcCCCcCCeEEEEecccchHH
Confidence 46899999999998875443321223667899999999877
No 89
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.87 E-value=2.8e-22 Score=187.31 Aligned_cols=157 Identities=18% Similarity=0.183 Sum_probs=118.8
Q ss_pred CCcHHHHHHHHHhhcCCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHHhhc
Q 010357 41 APTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRF 120 (512)
Q Consensus 41 ~~~~~Q~~~~~~~~~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~ 120 (512)
+|+++|.++++.++++++.++++|||+|||++++.++...+.. ...++||++|+++|+.|+.+.+..+....
T Consensus 113 ~l~~~Q~~ai~~~l~~~~~ll~~~tGsGKT~~~~~~~~~~~~~--------~~~~~lil~Pt~~L~~q~~~~l~~~~~~~ 184 (282)
T 1rif_A 113 EPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLEN--------YEGKILIIVPTTALTTQMADDFVDYRLFS 184 (282)
T ss_dssp CCCHHHHHHHHHHHHHSEEEECCCTTSCHHHHHHHHHHHHHHH--------CSSEEEEECSSHHHHHHHHHHHHHHTSCC
T ss_pred CccHHHHHHHHHHHhcCCeEEEcCCCCCcHHHHHHHHHHHHHc--------CCCeEEEEECCHHHHHHHHHHHHHhcccc
Confidence 6999999999999988889999999999999999888876654 13479999999999999999999885432
Q ss_pred CCcceEEEeCCCchHHHHHHHcCCCCEEEeCChHHHHHHhhcCCCcCCceeEEEEcchhHHHhcCchHHHHHHHHHhccC
Q 010357 121 HWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILGSR 200 (512)
Q Consensus 121 ~~~~~~~~~~g~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lV~DEah~l~~~~~~~~~~~i~~~~~~~ 200 (512)
......+.+|..... ......+|+|+||+++.+.. ...+.++++||+||||++.+ ..+..++..+..
T Consensus 185 -~~~~~~~~~~~~~~~---~~~~~~~I~v~T~~~l~~~~----~~~~~~~~~vIiDEaH~~~~----~~~~~il~~~~~- 251 (282)
T 1rif_A 185 -HAMIKKIGGGASKDD---KYKNDAPVVVGTWQTVVKQP----KEWFSQFGMMMNDECHLATG----KSISSIISGLNN- 251 (282)
T ss_dssp -GGGEEECSTTCSSTT---CCCTTCSEEEECHHHHTTSC----GGGGGGEEEEEEETGGGCCH----HHHHHHTTTCTT-
T ss_pred -cceEEEEeCCCcchh---hhccCCcEEEEchHHHHhhH----HHHHhhCCEEEEECCccCCc----ccHHHHHHHhhc-
Confidence 234455556544322 22346799999999875532 23356899999999999764 355666655543
Q ss_pred CCCCCCCCCcccccceeEEEEEEecchhhHHH
Q 010357 201 NIGSIGEGNEVSNVKRQNLLLSATLNEKVNHL 232 (512)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~ 232 (512)
..+++++|||+++.....
T Consensus 252 --------------~~~~l~lSATp~~~~~~~ 269 (282)
T 1rif_A 252 --------------CMFKFGLSGSLRDGKANI 269 (282)
T ss_dssp --------------CCEEEEECSSCCTTSTTH
T ss_pred --------------CCeEEEEeCCCCCcchHH
Confidence 789999999998654333
No 90
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=99.86 E-value=3.6e-21 Score=174.44 Aligned_cols=170 Identities=21% Similarity=0.235 Sum_probs=122.1
Q ss_pred CCcHHHHHHHHHhhcCCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHHhhc
Q 010357 41 APTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRF 120 (512)
Q Consensus 41 ~~~~~Q~~~~~~~~~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~ 120 (512)
.++++|.++++.+.+|++++++||||||||.++.+++++....... ..+.++++++|+++++.|+.+.+.......
T Consensus 61 p~~~~q~~~i~~i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~----~~~~~~l~~~p~~~la~q~~~~~~~~~~~~ 136 (235)
T 3llm_A 61 PVKKFESEILEAISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDR----AAECNIVVTQPRRISAVSVAERVAFERGEE 136 (235)
T ss_dssp GGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTC----GGGCEEEEEESSHHHHHHHHHHHHHTTTCC
T ss_pred ChHHHHHHHHHHHhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCC----CCceEEEEeccchHHHHHHHHHHHHHhccc
Confidence 3899999999999999999999999999999998888877655222 124579999999999999988887654321
Q ss_pred CCcceEEEeCCCchHHHHHHHcCCCCEEEeCChHHHHHHhhcCCCcCCceeEEEEcchhHH-HhcCch-HHHHHHHHHhc
Q 010357 121 HWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRI-LELGFG-KEIEEILDILG 198 (512)
Q Consensus 121 ~~~~~~~~~~g~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lV~DEah~l-~~~~~~-~~~~~i~~~~~ 198 (512)
-....+........ ......+|+|+||+++.+.+.. .++++++||+||||++ .+.++. ..+..++...+
T Consensus 137 ~~~~~g~~~~~~~~-----~~~~~~~Ivv~Tpg~l~~~l~~----~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~~ 207 (235)
T 3llm_A 137 PGKSCGYSVRFESI-----LPRPHASIMFCTVGVLLRKLEA----GIRGISHVIVDEIHERDINTDFLLVVLRDVVQAYP 207 (235)
T ss_dssp TTSSEEEEETTEEE-----CCCSSSEEEEEEHHHHHHHHHH----CCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHHCT
T ss_pred cCceEEEeechhhc-----cCCCCCeEEEECHHHHHHHHHh----hhcCCcEEEEECCccCCcchHHHHHHHHHHHhhCC
Confidence 11222222211110 0113478999999999998876 2678999999999984 444444 34555554432
Q ss_pred cCCCCCCCCCCcccccceeEEEEEEecchhhHHHHHhhcCCCe
Q 010357 199 SRNIGSIGEGNEVSNVKRQNLLLSATLNEKVNHLAKISLETPV 241 (512)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~ 241 (512)
..|++++|||++... +.+++.+.|.
T Consensus 208 ----------------~~~~il~SAT~~~~~--~~~~~~~~pv 232 (235)
T 3llm_A 208 ----------------EVRIVLMSATIDTSM--FCEYFFNCPI 232 (235)
T ss_dssp ----------------TSEEEEEECSSCCHH--HHHHTTSCCC
T ss_pred ----------------CCeEEEEecCCCHHH--HHHHcCCCCE
Confidence 678999999998765 6665555544
No 91
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.81 E-value=1.5e-19 Score=163.45 Aligned_cols=138 Identities=23% Similarity=0.189 Sum_probs=106.5
Q ss_pred CCcHHHHHHHHHhhcCCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHHhhc
Q 010357 41 APTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRF 120 (512)
Q Consensus 41 ~~~~~Q~~~~~~~~~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~ 120 (512)
.|+++|.++++.+++++++++++|||+|||++++.++... +.+++|++|+++|+.|+.+.+..+
T Consensus 93 ~l~~~Q~~ai~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~------------~~~~liv~P~~~L~~q~~~~~~~~---- 156 (237)
T 2fz4_A 93 SLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL------------STPTLIVVPTLALAEQWKERLGIF---- 156 (237)
T ss_dssp CCCHHHHHHHHHHTTTSEEEEEESSSTTHHHHHHHHHHHS------------CSCEEEEESSHHHHHHHHHHHGGG----
T ss_pred CcCHHHHHHHHHHHhCCCEEEEeCCCCCHHHHHHHHHHHc------------CCCEEEEeCCHHHHHHHHHHHHhC----
Confidence 5999999999999999899999999999999998887653 456999999999999999998873
Q ss_pred CCcceEEEeCCCchHHHHHHHcCCCCEEEeCChHHHHHHhhcCCCcCCceeEEEEcchhHHHhcCchHHHHHHHHHhccC
Q 010357 121 HWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILGSR 200 (512)
Q Consensus 121 ~~~~~~~~~~g~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lV~DEah~l~~~~~~~~~~~i~~~~~~~ 200 (512)
+...+..+.++.. ...+|+|+|++.+....... ...+++||+||||++.+..+. .++..++
T Consensus 157 ~~~~v~~~~g~~~---------~~~~i~v~T~~~l~~~~~~~----~~~~~llIiDEaH~l~~~~~~----~i~~~~~-- 217 (237)
T 2fz4_A 157 GEEYVGEFSGRIK---------ELKPLTVSTYDSAYVNAEKL----GNRFMLLIFDEVHHLPAESYV----QIAQMSI-- 217 (237)
T ss_dssp CGGGEEEESSSCB---------CCCSEEEEEHHHHHHTHHHH----TTTCSEEEEECSSCCCTTTHH----HHHHTCC--
T ss_pred CCCeEEEEeCCCC---------CcCCEEEEeHHHHHhhHHHh----cccCCEEEEECCccCCChHHH----HHHHhcc--
Confidence 3222555555543 25689999999987765432 235899999999998765443 3444333
Q ss_pred CCCCCCCCCcccccceeEEEEEEecch
Q 010357 201 NIGSIGEGNEVSNVKRQNLLLSATLNE 227 (512)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~i~~SAT~~~ 227 (512)
..+++++|||+.+
T Consensus 218 --------------~~~~l~LSATp~r 230 (237)
T 2fz4_A 218 --------------APFRLGLTATFER 230 (237)
T ss_dssp --------------CSEEEEEEESCC-
T ss_pred --------------CCEEEEEecCCCC
Confidence 5678999999875
No 92
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=99.80 E-value=5.5e-18 Score=173.85 Aligned_cols=71 Identities=25% Similarity=0.235 Sum_probs=60.3
Q ss_pred CCcHHHHHHHHH----hhcCCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHH
Q 010357 41 APTKVQAQAIPV----ILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKL 116 (512)
Q Consensus 41 ~~~~~Q~~~~~~----~~~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 116 (512)
+||+.|.+.+.. +.+|+++++.||||+|||++|++|++..+.. .+.+++|++||++++.|+.+.+..+
T Consensus 3 ~~R~~Q~~~~~~v~~~l~~~~~~~~~apTGtGKT~a~l~p~l~~~~~--------~~~kvli~t~T~~l~~Qi~~el~~l 74 (620)
T 4a15_A 3 ENRQYQVEAIDFLRSSLQKSYGVALESPTGSGKTIMALKSALQYSSE--------RKLKVLYLVRTNSQEEQVIKELRSL 74 (620)
T ss_dssp --CHHHHHHHHHHHHHHHHSSEEEEECCTTSCHHHHHHHHHHHHHHH--------HTCEEEEEESSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHhhhh--------cCCeEEEECCCHHHHHHHHHHHHHH
Confidence 499999998764 4578999999999999999999999988754 2567999999999999999999887
Q ss_pred Hhh
Q 010357 117 LHR 119 (512)
Q Consensus 117 ~~~ 119 (512)
...
T Consensus 75 ~~~ 77 (620)
T 4a15_A 75 SST 77 (620)
T ss_dssp HHH
T ss_pred hhc
Confidence 653
No 93
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=99.77 E-value=8.8e-19 Score=160.94 Aligned_cols=128 Identities=13% Similarity=0.240 Sum_probs=98.6
Q ss_pred cCCchHHHHHHHHHhhhccccCceEEEEeecchhhhhHHHhhhhhcCCCCCCChhHHHhhhhccceeeecCCCCHHHHHH
Q 010357 298 PCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRT 377 (512)
Q Consensus 298 ~~~~k~~~l~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~l~g~~~~~~r~~ 377 (512)
..+.|+..+.+++.... ..+.++||||++...++.+...|.... ++.+..+||+++..+|..
T Consensus 93 ~~s~K~~~L~~ll~~~~--~~~~kvlIFs~~~~~~~~l~~~L~~~~----------------g~~~~~l~G~~~~~~R~~ 154 (271)
T 1z5z_A 93 RRSGKMIRTMEIIEEAL--DEGDKIAIFTQFVDMGKIIRNIIEKEL----------------NTEVPFLYGELSKKERDD 154 (271)
T ss_dssp TTCHHHHHHHHHHHHHH--HTTCCEEEEESCHHHHHHHHHHHHHHH----------------CSCCCEECTTSCHHHHHH
T ss_pred ccCHHHHHHHHHHHHHH--hCCCeEEEEeccHHHHHHHHHHHHHhc----------------CCcEEEEECCCCHHHHHH
Confidence 45679999999998774 346899999999999999999997631 677889999999999999
Q ss_pred HHHhhhcC-CCc-EEEeecccccCCCCCCCcEEEEeCCCCChhHHHHhhhhcccCCCCccE--EEecCcc
Q 010357 378 TFGAFKTE-KKA-LLLSTDVAARGLDFPKVKCIIQYDSAGEATEYVHRVGRTARLGERGDS--LLFLQPV 443 (512)
Q Consensus 378 ~~~~f~~~-~~~-vLvaT~~~~~Gldip~~~~VI~~~~p~s~~~~~Q~~GRagR~g~~g~~--~~~~~~~ 443 (512)
+++.|+++ ..+ +|++|+++++|+|++++++||+||+|+++..|.||+||++|.|+.+.+ +.++..+
T Consensus 155 ~i~~F~~~~~~~v~L~st~~~g~Glnl~~a~~VI~~d~~wnp~~~~Q~~gR~~R~Gq~~~v~v~~li~~~ 224 (271)
T 1z5z_A 155 IISKFQNNPSVKFIVLSVKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVG 224 (271)
T ss_dssp HHHHHHHCTTCCEEEEECCTTCCCCCCTTCSEEEECSCCSCTTTC--------------CCEEEEEEETT
T ss_pred HHHHhcCCCCCCEEEEehhhhcCCcCcccCCEEEEECCCCChhHHHHHHHhccccCCCCceEEEEEeeCC
Confidence 99999999 666 799999999999999999999999999999999999999999998765 4445544
No 94
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=98.81 E-value=2.3e-08 Score=102.63 Aligned_cols=86 Identities=22% Similarity=0.261 Sum_probs=61.4
Q ss_pred HHHHHHHHhcCCCCCcHHHHHHHHHhhcCCCEEEEccCCChHhHH--HHHHHHHHHhhcCCCCCCCCCceEEEEcCcHHH
Q 010357 28 TLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVA--YLAPIINHLQSYSPRIDRSSGTFALVLVPTREL 105 (512)
Q Consensus 28 ~~~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~pTGsGKT~~--~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L 105 (512)
.+...+...++-..-.++|+++++.+++++.+++.|++|+|||.+ ++++++..+.. ..+.++++++||..+
T Consensus 136 ~~~~~l~~~~~~~~~~~~Q~~Ai~~~l~~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~-------~~~~~vll~APTg~A 208 (608)
T 1w36_D 136 LLAQTLDKLFPVSDEINWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMAD-------GERCRIRLAAPTGKA 208 (608)
T ss_dssp HHHHHHHTTCCCTTSCCHHHHHHHHHHTBSEEEEECCTTSTHHHHHHHHHHHHHHTCS-------SCCCCEEEEBSSHHH
T ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHhhh-------cCCCeEEEEeCChhH
Confidence 344455332221223789999999999999999999999999944 45555543311 235679999999999
Q ss_pred HHHHHHHHHHHHhhc
Q 010357 106 CLQVYEILHKLLHRF 120 (512)
Q Consensus 106 ~~q~~~~~~~~~~~~ 120 (512)
+.++.+.+.......
T Consensus 209 A~~L~e~~~~~~~~l 223 (608)
T 1w36_D 209 AARLTESLGKALRQL 223 (608)
T ss_dssp HHHHHHHHTHHHHHS
T ss_pred HHHHHHHHHHHHhcC
Confidence 999988887765543
No 95
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=98.35 E-value=2.5e-06 Score=86.51 Aligned_cols=65 Identities=22% Similarity=0.176 Sum_probs=50.9
Q ss_pred CCCCCcHHHHHHHHHhhcCCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcHHHHHHHHHH
Q 010357 38 GFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEI 112 (512)
Q Consensus 38 ~~~~~~~~Q~~~~~~~~~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~ 112 (512)
++. +++.|++++..+++++.+++.||.|+|||.+....+. .+.. .+.++++++||...+..+.+.
T Consensus 187 ~~~-L~~~Q~~Av~~~~~~~~~~I~G~pGTGKTt~i~~l~~-~l~~--------~g~~Vl~~ApT~~Aa~~L~e~ 251 (574)
T 3e1s_A 187 RKG-LSEEQASVLDQLAGHRLVVLTGGPGTGKSTTTKAVAD-LAES--------LGLEVGLCAPTGKAARRLGEV 251 (574)
T ss_dssp TTT-CCHHHHHHHHHHTTCSEEEEECCTTSCHHHHHHHHHH-HHHH--------TTCCEEEEESSHHHHHHHHHH
T ss_pred cCC-CCHHHHHHHHHHHhCCEEEEEcCCCCCHHHHHHHHHH-HHHh--------cCCeEEEecCcHHHHHHhHhh
Confidence 444 8999999999999988999999999999987554443 3332 266799999999888766553
No 96
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=98.35 E-value=1.5e-06 Score=90.15 Aligned_cols=67 Identities=22% Similarity=0.283 Sum_probs=56.0
Q ss_pred CCcHHHHHHHHHhhcCC-CEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHH
Q 010357 41 APTKVQAQAIPVILSGR-HVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKL 116 (512)
Q Consensus 41 ~~~~~Q~~~~~~~~~~~-~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 116 (512)
.+.+-|++|+..++..+ -.+|+||+|||||.+..-.+.+.+.. +.++|+++||...+.++.+.+...
T Consensus 189 ~LN~~Q~~AV~~al~~~~~~lI~GPPGTGKT~ti~~~I~~l~~~---------~~~ILv~a~TN~AvD~i~erL~~~ 256 (646)
T 4b3f_X 189 CLDTSQKEAVLFALSQKELAIIHGPPGTGKTTTVVEIILQAVKQ---------GLKVLCCAPSNIAVDNLVERLALC 256 (646)
T ss_dssp TCCHHHHHHHHHHHHCSSEEEEECCTTSCHHHHHHHHHHHHHHT---------TCCEEEEESSHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHhcCCCceEEECCCCCCHHHHHHHHHHHHHhC---------CCeEEEEcCchHHHHHHHHHHHhc
Confidence 47899999999988765 46899999999999987777776654 677999999999999988877653
No 97
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=98.30 E-value=2.8e-06 Score=84.30 Aligned_cols=69 Identities=22% Similarity=0.286 Sum_probs=50.9
Q ss_pred cCCCCCcHHHHHHHHHhhcC----C-CEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcHHHHHHHHH
Q 010357 37 LGFEAPTKVQAQAIPVILSG----R-HVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYE 111 (512)
Q Consensus 37 ~~~~~~~~~Q~~~~~~~~~~----~-~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~ 111 (512)
+.|..+++-|++++..++.. + .++|.|+.|||||.+....+...... ....+++++||...+..+.+
T Consensus 21 ~~~~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll~~~~~~l~~~--------~~~~il~~a~T~~Aa~~l~~ 92 (459)
T 3upu_A 21 MTFDDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLTKFIIEALIST--------GETGIILAAPTHAAKKILSK 92 (459)
T ss_dssp CCSSCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHHHHHHHHHHHT--------TCCCEEEEESSHHHHHHHHH
T ss_pred CccccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHHHHHHHHHHhc--------CCceEEEecCcHHHHHHHHh
Confidence 47888999999999876532 3 89999999999997765554444333 11369999999887776654
Q ss_pred HH
Q 010357 112 IL 113 (512)
Q Consensus 112 ~~ 113 (512)
.+
T Consensus 93 ~~ 94 (459)
T 3upu_A 93 LS 94 (459)
T ss_dssp HH
T ss_pred hh
Confidence 43
No 98
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=98.23 E-value=8e-06 Score=84.20 Aligned_cols=69 Identities=23% Similarity=0.259 Sum_probs=55.7
Q ss_pred CCCcHHHHHHHHHhhcCCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHH
Q 010357 40 EAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKL 116 (512)
Q Consensus 40 ~~~~~~Q~~~~~~~~~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 116 (512)
..+++.|.+|+..++.+...+++||+|+|||.+....+...+.. .+.++++++||...+.++.+.+...
T Consensus 179 ~~ln~~Q~~av~~~l~~~~~li~GppGTGKT~~~~~~i~~l~~~--------~~~~ilv~a~tn~A~~~l~~~l~~~ 247 (624)
T 2gk6_A 179 PDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQ--------GNGPVLVCAPSNIAVDQLTEKIHQT 247 (624)
T ss_dssp CCCCHHHHHHHHHHHTCSEEEEECCTTSCHHHHHHHHHHHHHTS--------SSCCEEEEESSHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHhcCCCeEEECCCCCCHHHHHHHHHHHHHHc--------CCCeEEEEeCcHHHHHHHHHHHHhc
Confidence 35789999999998887788999999999998876655544432 2567999999999999988877653
No 99
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=98.18 E-value=2.7e-05 Score=82.05 Aligned_cols=69 Identities=22% Similarity=0.229 Sum_probs=56.2
Q ss_pred CCCcHHHHHHHHHhhcCCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHH
Q 010357 40 EAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKL 116 (512)
Q Consensus 40 ~~~~~~Q~~~~~~~~~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 116 (512)
..+++.|.+|+..++++...+|.||+|||||.+....+...+.. .+.++++++||...+.++.+.+...
T Consensus 359 ~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~~i~~~i~~l~~~--------~~~~ILv~a~tn~A~d~l~~rL~~~ 427 (802)
T 2xzl_A 359 AQLNSSQSNAVSHVLQRPLSLIQGPPGTGKTVTSATIVYHLSKI--------HKDRILVCAPSNVAVDHLAAKLRDL 427 (802)
T ss_dssp CCCCHHHHHHHHHHTTCSEEEEECSTTSSHHHHHHHHHHHHHHH--------HCCCEEEEESSHHHHHHHHHHHHHT
T ss_pred ccCCHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHHHhC--------CCCeEEEEcCcHHHHHHHHHHHHhh
Confidence 35789999999999887778999999999998876655544432 2567999999999999998888764
No 100
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=98.10 E-value=1.7e-05 Score=83.45 Aligned_cols=68 Identities=24% Similarity=0.265 Sum_probs=54.8
Q ss_pred CCcHHHHHHHHHhhcCCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHH
Q 010357 41 APTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKL 116 (512)
Q Consensus 41 ~~~~~Q~~~~~~~~~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 116 (512)
.+++.|.+|+..++.+...+++||+|+|||.+....+...+.. .+.++++++||...+.++.+.+...
T Consensus 356 ~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~ti~~~i~~l~~~--------~~~~ilv~a~tn~A~~~l~~~l~~~ 423 (800)
T 2wjy_A 356 DLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQ--------GNGPVLVCAPSNIAVDQLTEKIHQT 423 (800)
T ss_dssp CCCHHHHHHHHHHHTSSEEEEECCTTSCHHHHHHHHHHHHHTT--------CSSCEEEEESSHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHhccCCeEEEEcCCCCCHHHHHHHHHHHHHHc--------CCCcEEEEcCcHHHHHHHHHHHHHh
Confidence 4789999999998888778999999999998876555444422 2567999999999999888877653
No 101
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=98.05 E-value=0.00081 Score=69.93 Aligned_cols=72 Identities=18% Similarity=0.201 Sum_probs=58.2
Q ss_pred CCCcHHHHHHHHHhhcCCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHHh
Q 010357 40 EAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLH 118 (512)
Q Consensus 40 ~~~~~~Q~~~~~~~~~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~ 118 (512)
..+++-|++++.. .+..++|.|+.|||||.+...-+.+.+.... ....+++++++|+..+.++.+.+.....
T Consensus 8 ~~Ln~~Q~~av~~--~~~~~lV~a~aGsGKT~~l~~ri~~l~~~~~-----~~~~~iL~ltft~~aa~e~~~rl~~~~~ 79 (647)
T 3lfu_A 8 DSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMSVEN-----CSPYSIMAVTFTNKAAAEMRHRIGQLMG 79 (647)
T ss_dssp TTCCHHHHHHHTC--CSSCEEEEECTTSCHHHHHHHHHHHHHHTSC-----CCGGGEEEEESSHHHHHHHHHHHHHHHC
T ss_pred hcCCHHHHHHHhC--CCCCEEEEECCCCCHHHHHHHHHHHHHHhCC-----CChhhEEEEeccHHHHHHHHHHHHHHhc
Confidence 3689999999973 3568999999999999998887777765522 1245799999999999999999887753
No 102
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=97.91 E-value=5.2e-05 Score=69.57 Aligned_cols=123 Identities=10% Similarity=0.085 Sum_probs=87.0
Q ss_pred cCCchHHHHHHHHHhhhccccCceEEEEeecchhhhhHHHhhhhhcCCCCCCChhHHHhhhhccceeeecCCCCHHHHHH
Q 010357 298 PCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRT 377 (512)
Q Consensus 298 ~~~~k~~~l~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~l~g~~~~~~r~~ 377 (512)
..+.|+..+-.++..+. ..+.+++||+...+....+-+++... +++...+.|.....+ .+
T Consensus 106 ~~SGKf~~L~~LL~~l~--~~~~kVLIfsq~t~~LDilE~~l~~~-----------------~~~y~RlDG~~~~~~-~k 165 (328)
T 3hgt_A 106 ENSGKFSVLRDLINLVQ--EYETETAIVCRPGRTMDLLEALLLGN-----------------KVHIKRYDGHSIKSA-AA 165 (328)
T ss_dssp HTCHHHHHHHHHHHHHT--TSCEEEEEEECSTHHHHHHHHHHTTS-----------------SCEEEESSSCCC------
T ss_pred HcCccHHHHHHHHHHHH--hCCCEEEEEECChhHHHHHHHHHhcC-----------------CCceEeCCCCchhhh-hh
Confidence 46789999988888874 45789999999999999999988776 778888898854432 22
Q ss_pred HHHhhhcCCCcEEEeecccccCCC-----CCCCcEEEEeCCCCChhHH-HHhhhhcccCC--CC--ccEEEecCccc
Q 010357 378 TFGAFKTEKKALLLSTDVAARGLD-----FPKVKCIIQYDSAGEATEY-VHRVGRTARLG--ER--GDSLLFLQPVE 444 (512)
Q Consensus 378 ~~~~f~~~~~~vLvaT~~~~~Gld-----ip~~~~VI~~~~p~s~~~~-~Q~~GRagR~g--~~--g~~~~~~~~~~ 444 (512)
. .+....+.+.|...+-|+| +..++.||.||..+++..= +|++-|+.|.| +. -.++.++....
T Consensus 166 ~----~~~~~~i~Lltsag~~gin~~~~nl~~aD~VI~~DsdwNp~~d~iQa~~r~~R~~~gq~k~v~V~RLvt~~T 238 (328)
T 3hgt_A 166 A----NDFSCTVHLFSSEGINFTKYPIKSKARFDMLICLDTTVDTSQKDIQYLLQYKRERKGLERYAPIVRLVAINS 238 (328)
T ss_dssp ------CCSEEEEEEESSCCCTTTSCCCCCSCCSEEEECSTTCCTTSHHHHHHHCCC---------CCEEEEEETTS
T ss_pred c----ccCCceEEEEECCCCCCcCcccccCCCCCEEEEECCCCCCCChHHHHHHHHhhhccCCCCcceEEEEeCCCC
Confidence 1 2344555555777777776 6789999999999999975 99999998873 32 34555555443
No 103
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=97.69 E-value=0.00034 Score=66.65 Aligned_cols=74 Identities=12% Similarity=0.119 Sum_probs=58.7
Q ss_pred CCcHHHHHHHHHhhcCCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHHhhc
Q 010357 41 APTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRF 120 (512)
Q Consensus 41 ~~~~~Q~~~~~~~~~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~ 120 (512)
.++|+|+..+..+...+.+++..+-+.|||.+....++..+.. ..+..+++++|++..+..+.+.+..+....
T Consensus 163 ~L~p~Qk~il~~l~~~R~~vi~~sRq~GKT~l~a~~~l~~a~~-------~~g~~v~~vA~t~~qA~~vf~~i~~mi~~~ 235 (385)
T 2o0j_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCF-------NKDKAVGILAHKGSMSAEVLDRTKQAIELL 235 (385)
T ss_dssp CCCHHHHHHHHHHHHSSEEEEEECSSSCHHHHHHHHHHHHHHS-------SSSCEEEEEESSHHHHHHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHhhccCcEEEEEEcCcCChhHHHHHHHHHHHHh-------CCCCeEEEEeCCHHHHHHHHHHHHHHHHhC
Confidence 4899999999876555668999999999999877766654433 236679999999999998888888877654
Q ss_pred C
Q 010357 121 H 121 (512)
Q Consensus 121 ~ 121 (512)
+
T Consensus 236 P 236 (385)
T 2o0j_A 236 P 236 (385)
T ss_dssp C
T ss_pred h
Confidence 4
No 104
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=97.44 E-value=0.0018 Score=66.16 Aligned_cols=74 Identities=12% Similarity=0.119 Sum_probs=59.2
Q ss_pred CCcHHHHHHHHHhhcCCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHHhhc
Q 010357 41 APTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRF 120 (512)
Q Consensus 41 ~~~~~Q~~~~~~~~~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~ 120 (512)
.|+++|+..+..+...+..++..+-|+|||.+....++..+.. ..+..+++++|+...+..+.+.++.+....
T Consensus 163 ~l~p~Q~~i~~~l~~~r~~~i~~~Rq~GKS~~~a~~~l~~~~~-------~~~~~i~~va~t~~qA~~~~~~i~~~i~~~ 235 (592)
T 3cpe_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCF-------NKDKAVGILAHKGSMSAEVLDRTKQAIELL 235 (592)
T ss_dssp CCCHHHHHHHHHHHHCSEEEEEECSSSCHHHHHHHHHHHHHHT-------SSSCEEEEEESSHHHHHHHHHHHHHHHTTS
T ss_pred cCCHHHHHHHHhhccccEEEEEEcCccChHHHHHHHHHHHHHh-------CCCCeEEEEECCHHHHHHHHHHHHHHHHhC
Confidence 3899999999877556778999999999999877666555543 235679999999999999998888887655
Q ss_pred C
Q 010357 121 H 121 (512)
Q Consensus 121 ~ 121 (512)
+
T Consensus 236 p 236 (592)
T 3cpe_A 236 P 236 (592)
T ss_dssp C
T ss_pred h
Confidence 4
No 105
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.09 E-value=0.002 Score=54.62 Aligned_cols=26 Identities=23% Similarity=0.312 Sum_probs=20.1
Q ss_pred cCCCEEEEccCCChHhHHHHHHHHHH
Q 010357 55 SGRHVLVNAATGTGKTVAYLAPIINH 80 (512)
Q Consensus 55 ~~~~~lv~~pTGsGKT~~~~~~~~~~ 80 (512)
.++.+++.||+|+|||..+...+-..
T Consensus 37 ~g~~~~l~G~~G~GKTtL~~~i~~~~ 62 (180)
T 3ec2_A 37 EGKGLTFVGSPGVGKTHLAVATLKAI 62 (180)
T ss_dssp GCCEEEECCSSSSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 46789999999999997765544433
No 106
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.07 E-value=0.00023 Score=60.65 Aligned_cols=39 Identities=18% Similarity=0.171 Sum_probs=29.6
Q ss_pred CCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcH
Q 010357 56 GRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTR 103 (512)
Q Consensus 56 ~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~ 103 (512)
|+-.++.||+|+|||..++-.+...... +.+++++.|..
T Consensus 3 g~i~vi~G~~gsGKTT~ll~~~~~~~~~---------g~~v~~~~~~~ 41 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTELLSFVEIYKLG---------KKKVAVFKPKI 41 (184)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHHT---------TCEEEEEEEC-
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHHC---------CCeEEEEeecc
Confidence 5557899999999998887666665544 56788888884
No 107
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=97.07 E-value=0.0013 Score=56.13 Aligned_cols=39 Identities=15% Similarity=0.108 Sum_probs=30.2
Q ss_pred CCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcH
Q 010357 56 GRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTR 103 (512)
Q Consensus 56 ~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~ 103 (512)
|+-.++.||+|+|||..++-.+.....+ +.+++++.|..
T Consensus 8 g~i~v~~G~mgsGKTT~ll~~a~r~~~~---------g~kV~v~k~~~ 46 (191)
T 1xx6_A 8 GWVEVIVGPMYSGKSEELIRRIRRAKIA---------KQKIQVFKPEI 46 (191)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHT---------TCCEEEEEEC-
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHC---------CCEEEEEEecc
Confidence 4456889999999998887777666544 67799998884
No 108
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=96.97 E-value=0.0014 Score=56.44 Aligned_cols=40 Identities=15% Similarity=0.208 Sum_probs=30.6
Q ss_pred CCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcHH
Q 010357 56 GRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRE 104 (512)
Q Consensus 56 ~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~ 104 (512)
|+-.++.+|+|+|||..++-.+..+... +.+++++.|...
T Consensus 28 G~l~vitG~MgsGKTT~lL~~a~r~~~~---------g~kVli~k~~~d 67 (214)
T 2j9r_A 28 GWIEVICGSMFSGKSEELIRRVRRTQFA---------KQHAIVFKPCID 67 (214)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHT---------TCCEEEEECC--
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHC---------CCEEEEEEeccC
Confidence 3345689999999998888877777655 778999999864
No 109
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.81 E-value=0.0011 Score=58.08 Aligned_cols=91 Identities=15% Similarity=0.153 Sum_probs=53.9
Q ss_pred cCCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHHhhcCCcceEEEeCCCch
Q 010357 55 SGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENR 134 (512)
Q Consensus 55 ~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~g~~~ 134 (512)
.|.-.++.||+|+|||..++..+.....+ +.+++++.|...- . ....+....+ ..
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r~~~~---------g~kVli~~~~~d~--r---~~~~i~srlG----------~~- 65 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHRLEYA---------DVKYLVFKPKIDT--R---SIRNIQSRTG----------TS- 65 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHHHHHT---------TCCEEEEEECCCG--G---GCSSCCCCCC----------CS-
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHHHHhc---------CCEEEEEEeccCc--h---HHHHHHHhcC----------CC-
Confidence 34456889999999998887777666544 6678998876521 0 0001111111 00
Q ss_pred HHHHHHHcCCCCEEEeCChHHHHHHhhcCCCcCCceeEEEEcchhHH
Q 010357 135 SKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRI 181 (512)
Q Consensus 135 ~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lV~DEah~l 181 (512)
...+-+.+.+.++..+... ..-..+++||+||++.+
T Consensus 66 ---------~~~~~~~~~~~i~~~i~~~--~~~~~~dvViIDEaQ~l 101 (223)
T 2b8t_A 66 ---------LPSVEVESAPEILNYIMSN--SFNDETKVIGIDEVQFF 101 (223)
T ss_dssp ---------SCCEEESSTHHHHHHHHST--TSCTTCCEEEECSGGGS
T ss_pred ---------ccccccCCHHHHHHHHHHH--hhCCCCCEEEEecCccC
Confidence 0123455666666655532 11235789999999964
No 110
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.77 E-value=0.0052 Score=56.41 Aligned_cols=62 Identities=23% Similarity=0.313 Sum_probs=39.7
Q ss_pred ccCccCCcccCCCCHHHHHHHHHhcCCCCCcHHHHHHHHH--hhcCCCEEEEccCCChHhHHHHHHH
Q 010357 13 EIFASCSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPV--ILSGRHVLVNAATGTGKTVAYLAPI 77 (512)
Q Consensus 13 ~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~Q~~~~~~--~~~~~~~lv~~pTGsGKT~~~~~~~ 77 (512)
...+..+|+++.-.+...+.+.+.. ..+.. ..+.+.. +...+++++.||+|+|||..+-..+
T Consensus 9 ~~~~~~~~~~i~G~~~~~~~l~~~~--~~~~~-~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la 72 (285)
T 3h4m_A 9 DERPNVRYEDIGGLEKQMQEIREVV--ELPLK-HPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVA 72 (285)
T ss_dssp ESSCCCCGGGSCSCHHHHHHHHHHT--HHHHH-CHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHH
T ss_pred cCCCCCCHHHhcCHHHHHHHHHHHH--HHHhh-CHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHH
Confidence 3455678999888888888886542 11111 1122222 2355689999999999998765543
No 111
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.71 E-value=0.01 Score=55.58 Aligned_cols=25 Identities=24% Similarity=0.211 Sum_probs=19.3
Q ss_pred CCCEEEEccCCChHhHHHHHHHHHH
Q 010357 56 GRHVLVNAATGTGKTVAYLAPIINH 80 (512)
Q Consensus 56 ~~~~lv~~pTGsGKT~~~~~~~~~~ 80 (512)
++.+++.||+|+|||..+-..+...
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~~ 61 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNEA 61 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHH
Confidence 4689999999999997765554433
No 112
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=96.60 E-value=0.0023 Score=61.65 Aligned_cols=83 Identities=23% Similarity=0.203 Sum_probs=51.5
Q ss_pred CEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHHhhcCCcceEEEeCCCchHHH
Q 010357 58 HVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKE 137 (512)
Q Consensus 58 ~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 137 (512)
-.++.|+.|+|||....-.+ . ....++++||++++.++.+.+... +..
T Consensus 163 v~~I~G~aGsGKTt~I~~~~-----~---------~~~~lVlTpT~~aa~~l~~kl~~~----~~~-------------- 210 (446)
T 3vkw_A 163 VVLVDGVPGCGKTKEILSRV-----N---------FEEDLILVPGRQAAEMIRRRANAS----GII-------------- 210 (446)
T ss_dssp EEEEEECTTSCHHHHHHHHC-----C---------TTTCEEEESCHHHHHHHHHHHTTT----SCC--------------
T ss_pred EEEEEcCCCCCHHHHHHHHh-----c---------cCCeEEEeCCHHHHHHHHHHhhhc----Ccc--------------
Confidence 35799999999997653322 1 123699999999998888776432 100
Q ss_pred HHHHcCCCCEEEeCChHHHHHHhhcCCCcCCceeEEEEcchhH
Q 010357 138 KARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADR 180 (512)
Q Consensus 138 ~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lV~DEah~ 180 (512)
.....-|.|.++++- +.........++||||||-.
T Consensus 211 -----~~~~~~V~T~dsfL~---~~~~~~~~~~d~liiDE~sm 245 (446)
T 3vkw_A 211 -----VATKDNVRTVDSFLM---NYGKGARCQFKRLFIDEGLM 245 (446)
T ss_dssp -----CCCTTTEEEHHHHHH---TTTSSCCCCCSEEEEETGGG
T ss_pred -----ccccceEEEeHHhhc---CCCCCCCCcCCEEEEeCccc
Confidence 011233667666543 21222112478999999985
No 113
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=96.57 E-value=0.0058 Score=64.09 Aligned_cols=72 Identities=21% Similarity=0.183 Sum_probs=58.0
Q ss_pred CCCcHHHHHHHHHhhcCCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHHh
Q 010357 40 EAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLH 118 (512)
Q Consensus 40 ~~~~~~Q~~~~~~~~~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~ 118 (512)
..+++-|++++.. .+.+++|.|+.|||||.+...-+...+..... ...++|+++.|+..+.++.+.+..+..
T Consensus 10 ~~Ln~~Q~~av~~--~~g~~lV~AgAGSGKT~vL~~ri~~ll~~~~~-----~p~~IL~vTFTnkAA~Em~~Rl~~~l~ 81 (724)
T 1pjr_A 10 AHLNKEQQEAVRT--TEGPLLIMAGAGSGKTRVLTHRIAYLMAEKHV-----APWNILAITFTNKAAREMRERVQSLLG 81 (724)
T ss_dssp TTSCHHHHHHHHC--CSSCEEEEECTTSCHHHHHHHHHHHHHHTTCC-----CGGGEEEEESSHHHHHHHHHHHHHHHG
T ss_pred hhCCHHHHHHHhC--CCCCEEEEEcCCCCHHHHHHHHHHHHHHhcCC-----CHHHeEEEeccHHHHHHHHHHHHHHhc
Confidence 3589999999976 35689999999999999988877777764221 245699999999999999988877643
No 114
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=96.53 E-value=0.0043 Score=64.65 Aligned_cols=71 Identities=20% Similarity=0.145 Sum_probs=57.2
Q ss_pred CCcHHHHHHHHHhhcCCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHHh
Q 010357 41 APTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLH 118 (512)
Q Consensus 41 ~~~~~Q~~~~~~~~~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~ 118 (512)
.+++-|++++.. .+.+++|.|+.|||||.+...-+...+..... ...++++++.|+..+.++.+.+.....
T Consensus 2 ~L~~~Q~~av~~--~~~~~lV~AgaGSGKT~~l~~ri~~ll~~~~~-----~~~~IL~lTfT~~Aa~em~~Rl~~~l~ 72 (673)
T 1uaa_A 2 RLNPGQQQAVEF--VTGPCLVLAGAGSGKTRVITNKIAHLIRGCGY-----QARHIAAVTFTNKAAREMKERVGQTLG 72 (673)
T ss_dssp CCCHHHHHHHHC--CSSEEEECCCTTSCHHHHHHHHHHHHHHHHCC-----CGGGEEEEESSHHHHHHHHHHHHHHSC
T ss_pred CCCHHHHHHHhC--CCCCEEEEeCCCCChHHHHHHHHHHHHHhcCC-----CHHHeEEEeccHHHHHHHHHHHHHHcC
Confidence 378999999976 35689999999999999988777777655221 245699999999999999998887643
No 115
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.50 E-value=0.0017 Score=53.13 Aligned_cols=24 Identities=25% Similarity=0.342 Sum_probs=19.1
Q ss_pred cCCCEEEEccCCChHhHHHHHHHH
Q 010357 55 SGRHVLVNAATGTGKTVAYLAPII 78 (512)
Q Consensus 55 ~~~~~lv~~pTGsGKT~~~~~~~~ 78 (512)
.++.+++.||+|+|||..+-..+-
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~ 58 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVA 58 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 677899999999999977555443
No 116
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=96.47 E-value=0.0061 Score=51.62 Aligned_cols=38 Identities=13% Similarity=0.127 Sum_probs=29.7
Q ss_pred CCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCc
Q 010357 56 GRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPT 102 (512)
Q Consensus 56 ~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt 102 (512)
++-.++.||+|||||.-.+..+-+.... +.+++++.|.
T Consensus 20 g~l~fiyG~MgsGKTt~Ll~~i~n~~~~---------~~kvl~~kp~ 57 (195)
T 1w4r_A 20 GQIQVILGPMFSGKSTELMRRVRRFQIA---------QYKCLVIKYA 57 (195)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHHHT---------TCCEEEEEET
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHc---------CCeEEEEccc
Confidence 5557889999999997777766666554 5779999887
No 117
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=96.46 E-value=0.0028 Score=64.34 Aligned_cols=113 Identities=22% Similarity=0.279 Sum_probs=73.4
Q ss_pred CCcHHHHHHHHHhhc--CCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHHh
Q 010357 41 APTKVQAQAIPVILS--GRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLH 118 (512)
Q Consensus 41 ~~~~~Q~~~~~~~~~--~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~ 118 (512)
.++.-|++++..+.. ....++.|+-|.|||.+..+.+.... ..+++.+|+.+-+....+ +..
T Consensus 175 ~~T~dQ~~al~~~~~~~~~~~vlta~RGRGKSa~lG~~~a~~~------------~~~~vtAP~~~a~~~l~~----~~~ 238 (671)
T 2zpa_A 175 APQPEQQQLLKQLMTMPPGVAAVTAARGRGKSALAGQLISRIA------------GRAIVTAPAKASTDVLAQ----FAG 238 (671)
T ss_dssp SCCHHHHHHHHHHTTCCSEEEEEEECTTSSHHHHHHHHHHHSS------------SCEEEECSSCCSCHHHHH----HHG
T ss_pred CCCHHHHHHHHHHHHhhhCeEEEecCCCCCHHHHHHHHHHHHH------------hCcEEECCCHHHHHHHHH----Hhh
Confidence 578899999988775 33578999999999977666665442 236999999875543332 211
Q ss_pred hcCCcceEEEeCCCchHHHHHHHcCCCCEEEeCChHHHHHHhhcCCCcCCceeEEEEcchhHHHhcCchHHHHHHHHHhc
Q 010357 119 RFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILG 198 (512)
Q Consensus 119 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lV~DEah~l~~~~~~~~~~~i~~~~~ 198 (512)
. .|-+..|+.+.. . ....++||||||=.+ -...+..++..
T Consensus 239 ~--------------------------~i~~~~Pd~~~~---~-----~~~~dlliVDEAAaI----p~pll~~ll~~-- 278 (671)
T 2zpa_A 239 E--------------------------KFRFIAPDALLA---S-----DEQADWLVVDEAAAI----PAPLLHQLVSR-- 278 (671)
T ss_dssp G--------------------------GCCBCCHHHHHH---S-----CCCCSEEEEETGGGS----CHHHHHHHHTT--
T ss_pred C--------------------------CeEEeCchhhhh---C-----cccCCEEEEEchhcC----CHHHHHHHHhh--
Confidence 0 022334555332 1 125789999999975 33555555542
Q ss_pred cCCCCCCCCCCcccccceeEEEEEEecc
Q 010357 199 SRNIGSIGEGNEVSNVKRQNLLLSATLN 226 (512)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~i~~SAT~~ 226 (512)
...+++|.|+.
T Consensus 279 -----------------~~~v~~~tTv~ 289 (671)
T 2zpa_A 279 -----------------FPRTLLTTTVQ 289 (671)
T ss_dssp -----------------SSEEEEEEEBS
T ss_pred -----------------CCeEEEEecCC
Confidence 33488888874
No 118
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=96.46 E-value=0.0029 Score=54.37 Aligned_cols=41 Identities=15% Similarity=0.200 Sum_probs=28.9
Q ss_pred cCCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcHH
Q 010357 55 SGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRE 104 (512)
Q Consensus 55 ~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~ 104 (512)
.|.-.++.+|+|+|||..++..+...... +.+++++.|...
T Consensus 27 ~G~I~vitG~M~sGKTT~Llr~~~r~~~~---------g~kvli~kp~~D 67 (219)
T 3e2i_A 27 SGWIECITGSMFSGKSEELIRRLRRGIYA---------KQKVVVFKPAID 67 (219)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHHHHHT---------TCCEEEEEEC--
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHHc---------CCceEEEEeccC
Confidence 34456889999999997766666555433 567999999754
No 119
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=96.45 E-value=0.017 Score=54.09 Aligned_cols=47 Identities=19% Similarity=0.199 Sum_probs=28.0
Q ss_pred CccCCcccCCCCHHHHHHHHHhcCCCCCcHHHHHHHHHhhcC---CCEEEEccCCChHhHHHHHHH
Q 010357 15 FASCSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSG---RHVLVNAATGTGKTVAYLAPI 77 (512)
Q Consensus 15 ~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~Q~~~~~~~~~~---~~~lv~~pTGsGKT~~~~~~~ 77 (512)
+...+|+++--+++..+.+.+.. ..+ +.+++.+|+|+|||..+...+
T Consensus 20 ~rP~~~~~ivg~~~~~~~l~~~l----------------~~~~~~~~~L~~G~~G~GKT~la~~la 69 (324)
T 3u61_B 20 YRPSTIDECILPAFDKETFKSIT----------------SKGKIPHIILHSPSPGTGKTTVAKALC 69 (324)
T ss_dssp SCCCSTTTSCCCHHHHHHHHHHH----------------HTTCCCSEEEECSSTTSSHHHHHHHHH
T ss_pred hCCCCHHHHhCcHHHHHHHHHHH----------------HcCCCCeEEEeeCcCCCCHHHHHHHHH
Confidence 44456666666666655553321 122 235667779999998765543
No 120
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=96.45 E-value=0.0035 Score=54.52 Aligned_cols=40 Identities=13% Similarity=0.165 Sum_probs=31.7
Q ss_pred CCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcHH
Q 010357 56 GRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRE 104 (512)
Q Consensus 56 ~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~ 104 (512)
|+-.++.|++|+|||..++-.+..+... +.+++++-|...
T Consensus 19 g~l~v~~G~MgsGKTT~lL~~~~r~~~~---------g~kvli~kp~~D 58 (234)
T 2orv_A 19 GQIQVILGPMFSGKSTELMRRVRRFQIA---------QYKCLVIKYAKD 58 (234)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHHTT---------TCCEEEEEETTC
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHC---------CCeEEEEeecCC
Confidence 5556889999999998888777776644 778999988753
No 121
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=96.31 E-value=0.016 Score=54.29 Aligned_cols=61 Identities=15% Similarity=0.089 Sum_probs=38.0
Q ss_pred CccCCcccCCCCHHHHHHHHHhcCCCCCcHHHHH-HHH-HhhcCCCEEEEccCCChHhHHHHHHHHH
Q 010357 15 FASCSFSSLGLHSTLCDQLRERLGFEAPTKVQAQ-AIP-VILSGRHVLVNAATGTGKTVAYLAPIIN 79 (512)
Q Consensus 15 ~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~Q~~-~~~-~~~~~~~~lv~~pTGsGKT~~~~~~~~~ 79 (512)
.+..+|+++.-.+...+.+.+... .+.... .+. .....+.+++.||+|+|||..+-..+..
T Consensus 12 ~~~~~~~di~G~~~~~~~l~~~i~----~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~ 74 (322)
T 3eie_A 12 KPNVKWEDVAGLEGAKEALKEAVI----LPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATE 74 (322)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHTH----HHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHH
T ss_pred CCCCCHHHhcChHHHHHHHHHHHH----HHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 455679998888888888866431 111100 000 1112357999999999999887655443
No 122
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=96.31 E-value=0.048 Score=49.46 Aligned_cols=23 Identities=22% Similarity=0.163 Sum_probs=18.4
Q ss_pred CCEEEEccCCChHhHHHHHHHHH
Q 010357 57 RHVLVNAATGTGKTVAYLAPIIN 79 (512)
Q Consensus 57 ~~~lv~~pTGsGKT~~~~~~~~~ 79 (512)
.++++.||+|+|||..+...+..
T Consensus 65 ~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHH
Confidence 46899999999999887655443
No 123
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=96.20 E-value=0.011 Score=65.96 Aligned_cols=72 Identities=25% Similarity=0.255 Sum_probs=58.5
Q ss_pred CCcHHHHHHHHHhhcCCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHH
Q 010357 41 APTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLL 117 (512)
Q Consensus 41 ~~~~~Q~~~~~~~~~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 117 (512)
.+++-|.+++.. .+++++|.|..|||||.+.+--+...+...... ....+++++++|++.+.++.+.+...+
T Consensus 10 ~~t~eQ~~~i~~--~~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~~~---~~~~~il~~Tft~~aa~e~~~ri~~~l 81 (1232)
T 3u4q_A 10 TWTDDQWNAIVS--TGQDILVAAAAGSGKTAVLVERMIRKITAEENP---IDVDRLLVVTFTNASAAEMKHRIAEAL 81 (1232)
T ss_dssp CCCHHHHHHHHC--CSSCEEEEECTTCCHHHHHHHHHHHHHSCSSSC---CCGGGEEEECSSHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHhC--CCCCEEEEecCCCcHHHHHHHHHHHHHhcCCCC---CCccceEEEeccHHHHHHHHHHHHHHH
Confidence 489999999976 377999999999999999888887777652211 135679999999999999998887754
No 124
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=96.19 E-value=0.065 Score=49.52 Aligned_cols=26 Identities=8% Similarity=-0.029 Sum_probs=20.2
Q ss_pred cCCCEEEEccCCChHhHHHHHHHHHH
Q 010357 55 SGRHVLVNAATGTGKTVAYLAPIINH 80 (512)
Q Consensus 55 ~~~~~lv~~pTGsGKT~~~~~~~~~~ 80 (512)
.+.++++.||+|+|||.++-..+-+.
T Consensus 44 ~~~~lli~GpPGTGKT~~v~~v~~~L 69 (318)
T 3te6_A 44 QNKLFYITNADDSTKFQLVNDVMDEL 69 (318)
T ss_dssp CCCEEEEECCCSHHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 34679999999999998876655444
No 125
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.14 E-value=0.029 Score=48.29 Aligned_cols=24 Identities=21% Similarity=0.225 Sum_probs=18.8
Q ss_pred CCEEEEccCCChHhHHHHHHHHHH
Q 010357 57 RHVLVNAATGTGKTVAYLAPIINH 80 (512)
Q Consensus 57 ~~~lv~~pTGsGKT~~~~~~~~~~ 80 (512)
+++++.||+|+|||..+...+...
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~ 78 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANEL 78 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 689999999999998765544433
No 126
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.05 E-value=0.027 Score=53.67 Aligned_cols=62 Identities=19% Similarity=0.281 Sum_probs=40.7
Q ss_pred CccCCcccCCCCHHHHHHHHHhcCCCCCcHHHH-HHHHH--hhcCCCEEEEccCCChHhHHHHHHHHHH
Q 010357 15 FASCSFSSLGLHSTLCDQLRERLGFEAPTKVQA-QAIPV--ILSGRHVLVNAATGTGKTVAYLAPIINH 80 (512)
Q Consensus 15 ~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~Q~-~~~~~--~~~~~~~lv~~pTGsGKT~~~~~~~~~~ 80 (512)
.+..+|++.+=-++..+.+++.. . .|... +.+.. +...+.+|+.||+|+|||+.+-..+-+.
T Consensus 142 ~p~v~~~dIgGl~~~k~~l~e~v--~--~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~ 206 (405)
T 4b4t_J 142 VPDSTYDMVGGLTKQIKEIKEVI--E--LPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHT 206 (405)
T ss_dssp SCSCCGGGSCSCHHHHHHHHHHT--H--HHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHH
T ss_pred CCCCCHHHhCCHHHHHHHHHHHH--H--HHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhh
Confidence 35678999887778888887653 1 12211 22222 2234679999999999998876665553
No 127
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.04 E-value=0.033 Score=51.46 Aligned_cols=62 Identities=18% Similarity=0.256 Sum_probs=38.4
Q ss_pred CccCCcccCCCCHHHHHHHHHhcCCCCCcHHHHHHHHH-hhcCCCEEEEccCCChHhHHHHHHHH
Q 010357 15 FASCSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPV-ILSGRHVLVNAATGTGKTVAYLAPII 78 (512)
Q Consensus 15 ~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~Q~~~~~~-~~~~~~~lv~~pTGsGKT~~~~~~~~ 78 (512)
.+..+|++++-.++..+.+.+.. ..|..+....... +..++.+++.||+|+|||..+-..+.
T Consensus 9 ~~~~~~~di~G~~~~~~~l~~~v--~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~ 71 (301)
T 3cf0_A 9 VPQVTWEDIGGLEDVKRELQELV--QYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIAN 71 (301)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHH--HHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHH
T ss_pred CCCCCHHHhCCHHHHHHHHHHHH--HHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHH
Confidence 34567888877788888886542 1111111111111 23467799999999999987655443
No 128
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.03 E-value=0.065 Score=45.28 Aligned_cols=24 Identities=17% Similarity=0.142 Sum_probs=18.7
Q ss_pred CCCEEEEccCCChHhHHHHHHHHH
Q 010357 56 GRHVLVNAATGTGKTVAYLAPIIN 79 (512)
Q Consensus 56 ~~~~lv~~pTGsGKT~~~~~~~~~ 79 (512)
..++++.||+|+|||..+...+..
T Consensus 43 ~~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp SCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHH
Confidence 357999999999999876555443
No 129
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.03 E-value=0.057 Score=46.96 Aligned_cols=22 Identities=36% Similarity=0.492 Sum_probs=17.4
Q ss_pred CCEEEEccCCChHhHHHHHHHH
Q 010357 57 RHVLVNAATGTGKTVAYLAPII 78 (512)
Q Consensus 57 ~~~lv~~pTGsGKT~~~~~~~~ 78 (512)
.++++.||+|+|||..+...+.
T Consensus 39 ~~~ll~G~~G~GKT~l~~~l~~ 60 (226)
T 2chg_A 39 PHLLFSGPPGTGKTATAIALAR 60 (226)
T ss_dssp CCEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999977655443
No 130
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.03 E-value=0.067 Score=51.71 Aligned_cols=63 Identities=21% Similarity=0.242 Sum_probs=41.6
Q ss_pred CccCCcccCCCCHHHHHHHHHhc--CCCCCcHHHHHHHHHhhcCCCEEEEccCCChHhHHHHHHHHHH
Q 010357 15 FASCSFSSLGLHSTLCDQLRERL--GFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINH 80 (512)
Q Consensus 15 ~~~~~~~~~~l~~~~~~~l~~~~--~~~~~~~~Q~~~~~~~~~~~~~lv~~pTGsGKT~~~~~~~~~~ 80 (512)
.+..+|+..+--++..+.+.+.. ++.+|--++... +--.+.+|+.||+|+|||+.+-..+-+.
T Consensus 175 ~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g---~~~prGvLLyGPPGTGKTllAkAiA~e~ 239 (434)
T 4b4t_M 175 KPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMG---IRAPKGALMYGPPGTGKTLLARACAAQT 239 (434)
T ss_dssp SCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHC---CCCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCC---CCCCCeeEEECcCCCCHHHHHHHHHHHh
Confidence 45678999988888888887642 122233232221 1234679999999999998876655543
No 131
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=95.99 E-value=0.035 Score=54.35 Aligned_cols=24 Identities=17% Similarity=0.062 Sum_probs=18.7
Q ss_pred CCCEEEEccCCChHhHHHHHHHHH
Q 010357 56 GRHVLVNAATGTGKTVAYLAPIIN 79 (512)
Q Consensus 56 ~~~~lv~~pTGsGKT~~~~~~~~~ 79 (512)
.+++++.||+|+|||..+-..+-.
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~ 153 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNY 153 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 357999999999999876554443
No 132
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=95.94 E-value=0.024 Score=53.28 Aligned_cols=39 Identities=18% Similarity=0.147 Sum_probs=28.7
Q ss_pred CcHHHHHHHHHhh----cCC---CEEEEccCCChHhHHHHHHHHHH
Q 010357 42 PTKVQAQAIPVIL----SGR---HVLVNAATGTGKTVAYLAPIINH 80 (512)
Q Consensus 42 ~~~~Q~~~~~~~~----~~~---~~lv~~pTGsGKT~~~~~~~~~~ 80 (512)
+.|||.+++..+. +|+ ..++.||.|+|||..+...+...
T Consensus 3 ~~pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~l 48 (334)
T 1a5t_A 3 WYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYL 48 (334)
T ss_dssp CCGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHHHHHH
Confidence 5688888876554 343 37999999999998877665544
No 133
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=95.92 E-value=0.067 Score=45.00 Aligned_cols=25 Identities=20% Similarity=0.199 Sum_probs=19.4
Q ss_pred CCCEEEEccCCChHhHHHHHHHHHH
Q 010357 56 GRHVLVNAATGTGKTVAYLAPIINH 80 (512)
Q Consensus 56 ~~~~lv~~pTGsGKT~~~~~~~~~~ 80 (512)
..++++.||+|+|||..+...+...
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHHH
Confidence 4579999999999998776555443
No 134
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.71 E-value=0.074 Score=50.91 Aligned_cols=24 Identities=29% Similarity=0.115 Sum_probs=18.4
Q ss_pred CCCEEEEccCCChHhHHHHHHHHH
Q 010357 56 GRHVLVNAATGTGKTVAYLAPIIN 79 (512)
Q Consensus 56 ~~~~lv~~pTGsGKT~~~~~~~~~ 79 (512)
.+.+++.||+|+|||..+...+..
T Consensus 45 ~~~vll~G~~G~GKT~la~~l~~~ 68 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVSKYIFNE 68 (384)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHH
Confidence 346999999999999876554433
No 135
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=95.67 E-value=0.081 Score=47.52 Aligned_cols=59 Identities=19% Similarity=0.174 Sum_probs=33.0
Q ss_pred cCCcccCCCCHHHHHHHHHhcC-CCCCcHHHHHHHHHhhcCCCEEEEccCCChHhHHHHHHHH
Q 010357 17 SCSFSSLGLHSTLCDQLRERLG-FEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPII 78 (512)
Q Consensus 17 ~~~~~~~~l~~~~~~~l~~~~~-~~~~~~~Q~~~~~~~~~~~~~lv~~pTGsGKT~~~~~~~~ 78 (512)
..+|+++.-.+...+.+.+... +..+..+... .+...+.+++.||+|+|||..+-..+.
T Consensus 2 ~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~---g~~~~~~vll~G~~GtGKT~la~~la~ 61 (262)
T 2qz4_A 2 GVSFKDVAGMHEAKLEVREFVDYLKSPERFLQL---GAKVPKGALLLGPPGCGKTLLAKAVAT 61 (262)
T ss_dssp CCCTTSSCSCHHHHHHHHHHHHHHHCCC---------CCCCCEEEEESCTTSSHHHHHHHHHH
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHHCHHHHHHc---CCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 3567777666677766643211 0111111111 112346789999999999987665544
No 136
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=95.66 E-value=0.051 Score=52.53 Aligned_cols=128 Identities=20% Similarity=0.217 Sum_probs=65.4
Q ss_pred CEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEc--CcHHHHHHHHHHHHHHHhhcCCcceEEEeCCCchH
Q 010357 58 HVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLV--PTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRS 135 (512)
Q Consensus 58 ~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~--Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~g~~~~ 135 (512)
-+++.||+|+|||.++...+...... +.+++++. +.+.-+ .+.+..+....+.. ........
T Consensus 99 vI~lvG~~GsGKTTt~~kLA~~l~~~---------G~kVllv~~D~~r~~a---~eqL~~~~~~~gv~---~~~~~~~~- 162 (433)
T 3kl4_A 99 IIMLVGVQGSGKTTTAGKLAYFYKKR---------GYKVGLVAADVYRPAA---YDQLLQLGNQIGVQ---VYGEPNNQ- 162 (433)
T ss_dssp EEEECCCTTSCHHHHHHHHHHHHHHT---------TCCEEEEEECCSCHHH---HHHHHHHHHTTTCC---EECCTTCS-
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHc---------CCeEEEEecCccchhH---HHHHHHHHHhcCCc---eeeccccC-
Confidence 46789999999998876666544332 45565554 333322 22333333322211 11111110
Q ss_pred HHHHHHcCCCCEEEeCChHH-HHHHhhcCCCcCCceeEEEEcchhHHH---hcCchHHHHHHHHHhccCCCCCCCCCCcc
Q 010357 136 KEKARLRKGISILVATPGRL-LDHLKHTSSFLHTNLRWIIFDEADRIL---ELGFGKEIEEILDILGSRNIGSIGEGNEV 211 (512)
Q Consensus 136 ~~~~~~~~~~~Iiv~Tp~~l-~~~l~~~~~~~~~~~~~lV~DEah~l~---~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 211 (512)
.|..+ ...+... .....+++|+|++-++. +..+...+..+......
T Consensus 163 ---------------dp~~i~~~al~~a---~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~p------------ 212 (433)
T 3kl4_A 163 ---------------NPIEIAKKGVDIF---VKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKP------------ 212 (433)
T ss_dssp ---------------CHHHHHHHHHHHT---TTTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCC------------
T ss_pred ---------------CHHHHHHHHHHHH---HhcCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCC------------
Confidence 11111 1222221 11367899999997543 22244555555555543
Q ss_pred cccceeEEEEEEecchhhHHHHH
Q 010357 212 SNVKRQNLLLSATLNEKVNHLAK 234 (512)
Q Consensus 212 ~~~~~~~i~~SAT~~~~~~~~~~ 234 (512)
..-+++++|+..........
T Consensus 213 ---d~vlLVlDa~~gq~a~~~a~ 232 (433)
T 3kl4_A 213 ---DDVILVIDASIGQKAYDLAS 232 (433)
T ss_dssp ---SEEEEEEEGGGGGGGHHHHH
T ss_pred ---cceEEEEeCccchHHHHHHH
Confidence 56678888887654444433
No 137
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=95.53 E-value=0.026 Score=49.95 Aligned_cols=26 Identities=12% Similarity=0.087 Sum_probs=20.0
Q ss_pred cCCCEEEEccCCChHhHHHHHHHHHH
Q 010357 55 SGRHVLVNAATGTGKTVAYLAPIINH 80 (512)
Q Consensus 55 ~~~~~lv~~pTGsGKT~~~~~~~~~~ 80 (512)
.++.+++.||+|+|||..+...+...
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~ 76 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARA 76 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 45789999999999998765554443
No 138
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=95.45 E-value=0.033 Score=53.63 Aligned_cols=22 Identities=32% Similarity=0.373 Sum_probs=18.2
Q ss_pred CCCEEEEccCCChHhHHHHHHH
Q 010357 56 GRHVLVNAATGTGKTVAYLAPI 77 (512)
Q Consensus 56 ~~~~lv~~pTGsGKT~~~~~~~ 77 (512)
.+++++.||+|+|||..+-..+
T Consensus 148 ~~~vLL~GppGtGKT~la~aia 169 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAKAVA 169 (389)
T ss_dssp CSEEEEESSTTSCHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHH
Confidence 4689999999999998775543
No 139
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.35 E-value=0.25 Score=47.08 Aligned_cols=23 Identities=26% Similarity=0.346 Sum_probs=18.4
Q ss_pred CCCEEEEccCCChHhHHHHHHHH
Q 010357 56 GRHVLVNAATGTGKTVAYLAPII 78 (512)
Q Consensus 56 ~~~~lv~~pTGsGKT~~~~~~~~ 78 (512)
++.+++.||+|+|||..+-..+-
T Consensus 45 ~~~vli~G~~G~GKTtl~~~l~~ 67 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVKFVLS 67 (386)
T ss_dssp CCCEEEEECTTSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 56799999999999987655443
No 140
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=95.30 E-value=0.036 Score=54.82 Aligned_cols=58 Identities=22% Similarity=0.331 Sum_probs=34.6
Q ss_pred ccCCcccCCCCHHHHHHHHHhcCCCCCcHHHHHHHHH--hhcCCCEEEEccCCChHhHHHHHH
Q 010357 16 ASCSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPV--ILSGRHVLVNAATGTGKTVAYLAP 76 (512)
Q Consensus 16 ~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~Q~~~~~~--~~~~~~~lv~~pTGsGKT~~~~~~ 76 (512)
...+|+++.-.++..+.+.+.. ..+..+ .+.+.. +...+.+++.||+|+|||..+-..
T Consensus 199 ~~~~~~~i~G~~~~~~~l~~~i--~~~l~~-~~~~~~~g~~~~~~vLL~GppGtGKT~lArai 258 (489)
T 3hu3_A 199 NEVGYDDIGGCRKQLAQIKEMV--ELPLRH-PALFKAIGVKPPRGILLYGPPGTGKTLIARAV 258 (489)
T ss_dssp TCCCGGGCCSCHHHHHHHHHHT--HHHHHC-HHHHHHHTCCCCCEEEEECSTTSSHHHHHHHH
T ss_pred CCCCHHHcCCHHHHHHHHHHHH--HHHhhC-HHHHHhcCCCCCCcEEEECcCCCCHHHHHHHH
Confidence 4456777766666666665542 111111 122222 234567999999999999876554
No 141
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=95.29 E-value=0.16 Score=48.54 Aligned_cols=25 Identities=28% Similarity=0.278 Sum_probs=19.3
Q ss_pred cCCCEEEEccCCChHhHHHHHHHHH
Q 010357 55 SGRHVLVNAATGTGKTVAYLAPIIN 79 (512)
Q Consensus 55 ~~~~~lv~~pTGsGKT~~~~~~~~~ 79 (512)
.+.++++.||+|+|||..+-..+..
T Consensus 43 ~~~~vll~G~~G~GKT~l~~~~~~~ 67 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAVARLVLRR 67 (387)
T ss_dssp CCCCEEECBCTTSSHHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHH
Confidence 3468999999999999876555433
No 142
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=95.25 E-value=0.021 Score=54.24 Aligned_cols=60 Identities=15% Similarity=0.156 Sum_probs=33.4
Q ss_pred ccCCcccCCCCHHHHHHHHHhcCC--CCCcHHHHHHHHHhhcCCCEEEEccCCChHhHHHHHHHHH
Q 010357 16 ASCSFSSLGLHSTLCDQLRERLGF--EAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIIN 79 (512)
Q Consensus 16 ~~~~~~~~~l~~~~~~~l~~~~~~--~~~~~~Q~~~~~~~~~~~~~lv~~pTGsGKT~~~~~~~~~ 79 (512)
+..+|++++-.+...+.+.+.... ..|..++. .....+.+++.||+|+|||..+-..+.+
T Consensus 46 ~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~----~~~~~~~iLL~GppGtGKT~la~ala~~ 107 (355)
T 2qp9_X 46 PNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKG----NRKPTSGILLYGPPGTGKSYLAKAVATE 107 (355)
T ss_dssp -CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCS----SCCCCCCEEEECSTTSCHHHHHHHHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhc----CCCCCceEEEECCCCCcHHHHHHHHHHH
Confidence 345677776556666666543210 01111100 0112357999999999999887655544
No 143
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=95.00 E-value=0.11 Score=48.02 Aligned_cols=23 Identities=30% Similarity=0.239 Sum_probs=18.3
Q ss_pred CCEEEEccCCChHhHHHHHHHHH
Q 010357 57 RHVLVNAATGTGKTVAYLAPIIN 79 (512)
Q Consensus 57 ~~~lv~~pTGsGKT~~~~~~~~~ 79 (512)
.++++.||+|+|||..+-..+..
T Consensus 68 ~~vll~G~~GtGKT~la~~la~~ 90 (309)
T 3syl_A 68 LHMSFTGNPGTGKTTVALKMAGL 90 (309)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999887655443
No 144
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=95.00 E-value=0.26 Score=43.63 Aligned_cols=50 Identities=24% Similarity=0.268 Sum_probs=33.1
Q ss_pred cCCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcHHHHHHHHHHHH
Q 010357 55 SGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILH 114 (512)
Q Consensus 55 ~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~ 114 (512)
.|.-+++.||+|+|||..++..+...... +..++++.-... ..+..+.+.
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~~~~~---------~~~v~~~~~e~~-~~~~~~~~~ 71 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWNGLKM---------GEPGIYVALEEH-PVQVRQNMA 71 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHHHHT---------TCCEEEEESSSC-HHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhc---------CCeEEEEEccCC-HHHHHHHHH
Confidence 56778999999999998877666665543 455777764322 344444443
No 145
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=94.99 E-value=0.085 Score=51.66 Aligned_cols=40 Identities=20% Similarity=0.124 Sum_probs=28.5
Q ss_pred cCCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCc
Q 010357 55 SGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPT 102 (512)
Q Consensus 55 ~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt 102 (512)
.|.-+++.|++|+|||..++..+.+.... .+..++|+..-
T Consensus 199 ~G~l~ii~G~pg~GKT~lal~ia~~~a~~--------~g~~vl~~slE 238 (444)
T 2q6t_A 199 PGSLNIIAARPAMGKTAFALTIAQNAALK--------EGVGVGIYSLE 238 (444)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHHHT--------TCCCEEEEESS
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHh--------CCCeEEEEECC
Confidence 45567899999999998877777665542 14457877643
No 146
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=94.91 E-value=0.082 Score=51.94 Aligned_cols=40 Identities=18% Similarity=0.120 Sum_probs=28.8
Q ss_pred hcCCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcC
Q 010357 54 LSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVP 101 (512)
Q Consensus 54 ~~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P 101 (512)
..|.-+++.|++|+|||..++..+...... .+..++|+..
T Consensus 201 ~~G~liiI~G~pG~GKTtl~l~ia~~~~~~--------~g~~Vl~~s~ 240 (454)
T 2r6a_A 201 QRSDLIIVAARPSVGKTAFALNIAQNVATK--------TNENVAIFSL 240 (454)
T ss_dssp CTTCEEEEECCTTSCHHHHHHHHHHHHHHH--------SSCCEEEEES
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHHHh--------CCCcEEEEEC
Confidence 355678999999999998877777666543 1445777764
No 147
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.72 E-value=0.22 Score=47.04 Aligned_cols=51 Identities=22% Similarity=0.281 Sum_probs=31.4
Q ss_pred CccCCcccCCCCHHHHHHHHHhcCCCCCcHHHHHHHHHhhcCCCEEEEccCCChHhHHHHHHHH
Q 010357 15 FASCSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPII 78 (512)
Q Consensus 15 ~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~pTGsGKT~~~~~~~~ 78 (512)
+...+|+++--++++.+.+.... +.. -...++++.||+|+|||..+-..+-
T Consensus 8 yrP~~~~~~vg~~~~~~~l~~~~-~~~------------~~~~~~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 8 YRPKSLNALSHNEELTNFLKSLS-DQP------------RDLPHLLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp TCCCSGGGCCSCHHHHHHHHTTT-TCT------------TCCCCEEEECSTTSSHHHHHHTHHH
T ss_pred cCCCCHHHhcCCHHHHHHHHHHH-hhC------------CCCCeEEEECCCCCCHHHHHHHHHH
Confidence 34456777666777777774321 010 1223499999999999977654443
No 148
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=94.71 E-value=0.043 Score=48.30 Aligned_cols=37 Identities=27% Similarity=0.392 Sum_probs=25.7
Q ss_pred cCCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEc
Q 010357 55 SGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLV 100 (512)
Q Consensus 55 ~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~ 100 (512)
.|.-+++.||+|+|||..+...+...... +..++++.
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~---------~~~v~~~~ 58 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFSLHFIAKGLRD---------GDPCIYVT 58 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHHHHHHH---------TCCEEEEE
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHC---------CCeEEEEE
Confidence 56678999999999997766655444433 34466664
No 149
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=94.52 E-value=0.28 Score=46.37 Aligned_cols=23 Identities=26% Similarity=0.263 Sum_probs=18.6
Q ss_pred CCCEEEEccCCChHhHHHHHHHH
Q 010357 56 GRHVLVNAATGTGKTVAYLAPII 78 (512)
Q Consensus 56 ~~~~lv~~pTGsGKT~~~~~~~~ 78 (512)
.+.+++.||+|+|||..+-..+.
T Consensus 117 ~~~vLl~GppGtGKT~la~aia~ 139 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLIGKCIAS 139 (357)
T ss_dssp CSEEEEESSTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999988765543
No 150
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=94.43 E-value=0.39 Score=46.46 Aligned_cols=24 Identities=21% Similarity=0.174 Sum_probs=18.6
Q ss_pred CEEEEccCCChHhHHHHHHHHHHH
Q 010357 58 HVLVNAATGTGKTVAYLAPIINHL 81 (512)
Q Consensus 58 ~~lv~~pTGsGKT~~~~~~~~~~~ 81 (512)
-+++++++|+|||.++...+....
T Consensus 102 vIlivG~~G~GKTTt~~kLA~~l~ 125 (443)
T 3dm5_A 102 ILLMVGIQGSGKTTTVAKLARYFQ 125 (443)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHHHHH
Confidence 467899999999988776665443
No 151
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=94.42 E-value=0.19 Score=46.70 Aligned_cols=22 Identities=41% Similarity=0.507 Sum_probs=17.5
Q ss_pred CEEEEccCCChHhHHHHHHHHH
Q 010357 58 HVLVNAATGTGKTVAYLAPIIN 79 (512)
Q Consensus 58 ~~lv~~pTGsGKT~~~~~~~~~ 79 (512)
++++.||+|+|||..+...+..
T Consensus 48 ~~ll~G~~G~GKT~la~~l~~~ 69 (327)
T 1iqp_A 48 HLLFAGPPGVGKTTAALALARE 69 (327)
T ss_dssp EEEEESCTTSSHHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHHH
Confidence 6999999999999876554433
No 152
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=94.32 E-value=0.062 Score=52.62 Aligned_cols=60 Identities=18% Similarity=0.133 Sum_probs=34.3
Q ss_pred CccCCcccCCCCHHHHHHHHHhcCC--CCCcHHHHHHHHHhhcCCCEEEEccCCChHhHHHHHHHH
Q 010357 15 FASCSFSSLGLHSTLCDQLRERLGF--EAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPII 78 (512)
Q Consensus 15 ~~~~~~~~~~l~~~~~~~l~~~~~~--~~~~~~Q~~~~~~~~~~~~~lv~~pTGsGKT~~~~~~~~ 78 (512)
.+..+|++++-.+...+.+.+..-. ..|.-++ ......+.+++.||+|+|||..+-..+.
T Consensus 128 ~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~----~~~~~~~~vLL~GppGtGKT~lA~aia~ 189 (444)
T 2zan_A 128 RPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFT----GKRTPWRGILLFGPPGTGKSYLAKAVAT 189 (444)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTS----GGGCCCSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhh----ccCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 3445677776666676666543210 0111111 0112346799999999999987755443
No 153
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=94.17 E-value=0.11 Score=49.65 Aligned_cols=20 Identities=30% Similarity=0.283 Sum_probs=16.6
Q ss_pred CEEEEccCCChHhHHHHHHH
Q 010357 58 HVLVNAATGTGKTVAYLAPI 77 (512)
Q Consensus 58 ~~lv~~pTGsGKT~~~~~~~ 77 (512)
.+++.||+|+|||..+-..+
T Consensus 46 ~~li~G~~G~GKTtl~~~l~ 65 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLW 65 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 69999999999998765544
No 154
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=94.09 E-value=0.065 Score=52.40 Aligned_cols=21 Identities=24% Similarity=0.253 Sum_probs=17.0
Q ss_pred CCEEEEccCCChHhHHHHHHH
Q 010357 57 RHVLVNAATGTGKTVAYLAPI 77 (512)
Q Consensus 57 ~~~lv~~pTGsGKT~~~~~~~ 77 (512)
.++++.||+|+|||..+-..+
T Consensus 51 ~~vLL~GppGtGKTtlAr~ia 71 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAEVIA 71 (447)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCcHHHHHHHHH
Confidence 368999999999998765544
No 155
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=93.93 E-value=0.4 Score=45.04 Aligned_cols=23 Identities=39% Similarity=0.478 Sum_probs=17.9
Q ss_pred CCEEEEccCCChHhHHHHHHHHH
Q 010357 57 RHVLVNAATGTGKTVAYLAPIIN 79 (512)
Q Consensus 57 ~~~lv~~pTGsGKT~~~~~~~~~ 79 (512)
.++++.||+|+|||..+-..+..
T Consensus 59 ~~~ll~G~~G~GKT~la~~la~~ 81 (353)
T 1sxj_D 59 PHMLFYGPPGTGKTSTILALTKE 81 (353)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999776554433
No 156
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=93.93 E-value=0.19 Score=52.70 Aligned_cols=100 Identities=11% Similarity=0.119 Sum_probs=76.0
Q ss_pred CCchHHHHHHHHHhhhccccCceEEEEeecchhhhhHHHhhhhhcCCCCCCChhHHHhhhhccceeeecCCCCHHHHHHH
Q 010357 299 CGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTT 378 (512)
Q Consensus 299 ~~~k~~~l~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~l~g~~~~~~r~~~ 378 (512)
.+.|.....-.+...+ ..+.++++.++++.-+..+++.+.+.... .+..+..+||+++..+|...
T Consensus 399 GSGKTlvall~il~~l--~~g~qvlvlaPtr~La~Q~~~~l~~~~~~-------------~gi~v~~l~G~~~~~~r~~~ 463 (780)
T 1gm5_A 399 GSGKTVVAQLAILDNY--EAGFQTAFMVPTSILAIQHYRRTVESFSK-------------FNIHVALLIGATTPSEKEKI 463 (780)
T ss_dssp SSSHHHHHHHHHHHHH--HHTSCEEEECSCHHHHHHHHHHHHHHHTC-------------SSCCEEECCSSSCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH--HcCCeEEEEeCcHHHHHHHHHHHHHHhhh-------------cCceEEEEeCCCCHHHHHHH
Confidence 3556554444443332 23579999999999999988888765321 16789999999999999999
Q ss_pred HHhhhcCCCcEEEeecc-cccCCCCCCCcEEEEeCC
Q 010357 379 FGAFKTEKKALLLSTDV-AARGLDFPKVKCIIQYDS 413 (512)
Q Consensus 379 ~~~f~~~~~~vLvaT~~-~~~Gldip~~~~VI~~~~ 413 (512)
.+.+.+|..+|+|+|.. +...+++.++++||.-..
T Consensus 464 ~~~l~~g~~~IvVgT~~ll~~~~~~~~l~lVVIDEa 499 (780)
T 1gm5_A 464 KSGLRNGQIDVVIGTHALIQEDVHFKNLGLVIIDEQ 499 (780)
T ss_dssp HHHHHSSCCCEEEECTTHHHHCCCCSCCCEEEEESC
T ss_pred HHHHhcCCCCEEEECHHHHhhhhhccCCceEEeccc
Confidence 99999999999999965 455678888888885544
No 157
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=93.89 E-value=1.1 Score=39.19 Aligned_cols=21 Identities=24% Similarity=0.165 Sum_probs=16.8
Q ss_pred CEEEEccCCChHhHHHHHHHH
Q 010357 58 HVLVNAATGTGKTVAYLAPII 78 (512)
Q Consensus 58 ~~lv~~pTGsGKT~~~~~~~~ 78 (512)
.+++.||+|+|||..+...+.
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~ 67 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAK 67 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999977655443
No 158
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=93.60 E-value=0.22 Score=46.72 Aligned_cols=20 Identities=30% Similarity=0.385 Sum_probs=17.0
Q ss_pred CCEEEEccCCChHhHHHHHH
Q 010357 57 RHVLVNAATGTGKTVAYLAP 76 (512)
Q Consensus 57 ~~~lv~~pTGsGKT~~~~~~ 76 (512)
.++++.||+|+|||..+-..
T Consensus 56 ~~vll~G~~GtGKT~la~~i 75 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLANII 75 (338)
T ss_dssp CCEEEECSTTSSHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHH
Confidence 57999999999999876554
No 159
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=93.56 E-value=2.6 Score=39.24 Aligned_cols=34 Identities=21% Similarity=0.148 Sum_probs=23.0
Q ss_pred cHHHHHHHHHhhcCCCEEEEccCCChHhHHHHHHH
Q 010357 43 TKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPI 77 (512)
Q Consensus 43 ~~~Q~~~~~~~~~~~~~lv~~pTGsGKT~~~~~~~ 77 (512)
|.-+.+.+.. +....++|.||.|+|||......+
T Consensus 18 R~~el~~L~~-l~~~~v~i~G~~G~GKT~L~~~~~ 51 (357)
T 2fna_A 18 REKEIEKLKG-LRAPITLVLGLRRTGKSSIIKIGI 51 (357)
T ss_dssp CHHHHHHHHH-TCSSEEEEEESTTSSHHHHHHHHH
T ss_pred hHHHHHHHHH-hcCCcEEEECCCCCCHHHHHHHHH
Confidence 4444445544 443578999999999997765444
No 160
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=93.49 E-value=0.15 Score=47.28 Aligned_cols=22 Identities=23% Similarity=0.407 Sum_probs=17.5
Q ss_pred CEEEEccCCChHhHHHHHHHHH
Q 010357 58 HVLVNAATGTGKTVAYLAPIIN 79 (512)
Q Consensus 58 ~~lv~~pTGsGKT~~~~~~~~~ 79 (512)
++++.||+|+|||..+...+..
T Consensus 44 ~~ll~G~~G~GKt~la~~l~~~ 65 (323)
T 1sxj_B 44 HMIISGMPGIGKTTSVHCLAHE 65 (323)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHHH
Confidence 4999999999999776555443
No 161
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=93.46 E-value=0.2 Score=42.33 Aligned_cols=35 Identities=23% Similarity=0.267 Sum_probs=30.4
Q ss_pred CCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEc
Q 010357 57 RHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLV 100 (512)
Q Consensus 57 ~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~ 100 (512)
..+++..++|.|||.+++-.++..+.+ |.+++|+-
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g~---------G~rV~~vQ 63 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVGH---------GKNVGVVQ 63 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHHT---------TCCEEEEE
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHC---------CCeEEEEE
Confidence 489999999999999999888888866 78888884
No 162
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=93.20 E-value=0.033 Score=51.99 Aligned_cols=51 Identities=18% Similarity=0.135 Sum_probs=34.1
Q ss_pred hhcCCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcHHHHHHHHHHH
Q 010357 53 ILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEIL 113 (512)
Q Consensus 53 ~~~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~ 113 (512)
+..|.-+++.|++|+|||..++-.+...... +..++|+..- .-..|+...+
T Consensus 43 l~~G~LiiIaG~pG~GKTt~al~ia~~~a~~---------g~~Vl~fSlE-ms~~ql~~Rl 93 (338)
T 4a1f_A 43 FNKGSLVIIGARPSMGKTSLMMNMVLSALND---------DRGVAVFSLE-MSAEQLALRA 93 (338)
T ss_dssp BCTTCEEEEEECTTSCHHHHHHHHHHHHHHT---------TCEEEEEESS-SCHHHHHHHH
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHHHHc---------CCeEEEEeCC-CCHHHHHHHH
Confidence 3456668999999999998877777666543 5668887653 2234444443
No 163
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=93.16 E-value=0.22 Score=44.18 Aligned_cols=29 Identities=34% Similarity=0.362 Sum_probs=21.5
Q ss_pred hhcCCCEEEEccCCChHhHHHHHHHHHHH
Q 010357 53 ILSGRHVLVNAATGTGKTVAYLAPIINHL 81 (512)
Q Consensus 53 ~~~~~~~lv~~pTGsGKT~~~~~~~~~~~ 81 (512)
+-.|.-+.+.||+|+|||..+...+...+
T Consensus 27 i~~G~~~~l~GpnGsGKSTLl~~i~~~~~ 55 (251)
T 2ehv_A 27 FPEGTTVLLTGGTGTGKTTFAAQFIYKGA 55 (251)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 44677889999999999977665553333
No 164
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=93.12 E-value=0.49 Score=44.33 Aligned_cols=22 Identities=36% Similarity=0.475 Sum_probs=17.4
Q ss_pred CEEEEccCCChHhHHHHHHHHH
Q 010357 58 HVLVNAATGTGKTVAYLAPIIN 79 (512)
Q Consensus 58 ~~lv~~pTGsGKT~~~~~~~~~ 79 (512)
++++.||+|+|||..+...+-.
T Consensus 48 ~~ll~Gp~G~GKTtla~~la~~ 69 (340)
T 1sxj_C 48 HLLFYGPPGTGKTSTIVALARE 69 (340)
T ss_dssp CEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3899999999999877655443
No 165
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=92.90 E-value=0.93 Score=43.57 Aligned_cols=22 Identities=18% Similarity=0.172 Sum_probs=16.9
Q ss_pred CCEEE--EccCCChHhHHHHHHHH
Q 010357 57 RHVLV--NAATGTGKTVAYLAPII 78 (512)
Q Consensus 57 ~~~lv--~~pTGsGKT~~~~~~~~ 78 (512)
..+++ .||.|+|||..+...+.
T Consensus 51 ~~~li~i~G~~G~GKT~L~~~~~~ 74 (412)
T 1w5s_A 51 VNMIYGSIGRVGIGKTTLAKFTVK 74 (412)
T ss_dssp EEEEEECTTCCSSSHHHHHHHHHH
T ss_pred CEEEEeCcCcCCCCHHHHHHHHHH
Confidence 45788 89999999987655443
No 166
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=92.77 E-value=0.5 Score=46.45 Aligned_cols=52 Identities=13% Similarity=0.224 Sum_probs=40.9
Q ss_pred cCCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHHh
Q 010357 55 SGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLH 118 (512)
Q Consensus 55 ~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~ 118 (512)
.+....+.+-||||||++....+... +..+|+|+|+...|.|+++.++.++.
T Consensus 13 ~~~~~~l~g~~gs~ka~~~a~l~~~~------------~~p~lvv~~~~~~A~~l~~~l~~~~~ 64 (483)
T 3hjh_A 13 AGEQRLLGELTGAACATLVAEIAERH------------AGPVVLIAPDMQNALRLHDEISQFTD 64 (483)
T ss_dssp TTCEEEEECCCTTHHHHHHHHHHHHS------------SSCEEEEESSHHHHHHHHHHHHHTCS
T ss_pred CCCeEEEeCCCchHHHHHHHHHHHHh------------CCCEEEEeCCHHHHHHHHHHHHhhCC
Confidence 45578899999999998765544321 34489999999999999999998753
No 167
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=92.55 E-value=0.11 Score=41.93 Aligned_cols=23 Identities=22% Similarity=0.170 Sum_probs=18.9
Q ss_pred hhcCCCEEEEccCCChHhHHHHH
Q 010357 53 ILSGRHVLVNAATGTGKTVAYLA 75 (512)
Q Consensus 53 ~~~~~~~lv~~pTGsGKT~~~~~ 75 (512)
...+.++++.||+|+|||..+-.
T Consensus 21 a~~~~~vll~G~~GtGKt~lA~~ 43 (145)
T 3n70_A 21 SETDIAVWLYGAPGTGRMTGARY 43 (145)
T ss_dssp TTCCSCEEEESSTTSSHHHHHHH
T ss_pred hCCCCCEEEECCCCCCHHHHHHH
Confidence 34667999999999999977644
No 168
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=92.53 E-value=0.11 Score=47.69 Aligned_cols=43 Identities=12% Similarity=0.107 Sum_probs=32.0
Q ss_pred cCCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcHHH
Q 010357 55 SGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTREL 105 (512)
Q Consensus 55 ~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L 105 (512)
.| .+++.+|+|+|||..++..+.+.... ..+.+++|+..-.++
T Consensus 28 ~G-iteI~G~pGsGKTtL~Lq~~~~~~~~-------g~g~~vlyId~E~s~ 70 (333)
T 3io5_A 28 SG-LLILAGPSKSFKSNFGLTMVSSYMRQ-------YPDAVCLFYDSEFGI 70 (333)
T ss_dssp SE-EEEEEESSSSSHHHHHHHHHHHHHHH-------CTTCEEEEEESSCCC
T ss_pred CC-eEEEECCCCCCHHHHHHHHHHHHHhc-------CCCceEEEEeccchh
Confidence 45 57899999999998888777776543 235678998765554
No 169
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=92.43 E-value=0.6 Score=42.91 Aligned_cols=20 Identities=15% Similarity=0.036 Sum_probs=16.3
Q ss_pred CEEEEccCCChHhHHHHHHH
Q 010357 58 HVLVNAATGTGKTVAYLAPI 77 (512)
Q Consensus 58 ~~lv~~pTGsGKT~~~~~~~ 77 (512)
..++.||.|+|||..+...+
T Consensus 20 ~~Lf~Gp~G~GKtt~a~~la 39 (305)
T 2gno_A 20 SILINGEDLSYPREVSLELP 39 (305)
T ss_dssp EEEEECSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 57899999999997765544
No 170
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=92.34 E-value=0.1 Score=41.97 Aligned_cols=21 Identities=10% Similarity=0.071 Sum_probs=17.5
Q ss_pred hhcCCCEEEEccCCChHhHHH
Q 010357 53 ILSGRHVLVNAATGTGKTVAY 73 (512)
Q Consensus 53 ~~~~~~~lv~~pTGsGKT~~~ 73 (512)
...+.++++.||+|+|||..+
T Consensus 24 ~~~~~~vll~G~~GtGKt~lA 44 (143)
T 3co5_A 24 AKRTSPVFLTGEAGSPFETVA 44 (143)
T ss_dssp HTCSSCEEEEEETTCCHHHHH
T ss_pred hCCCCcEEEECCCCccHHHHH
Confidence 346678999999999999765
No 171
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=92.30 E-value=0.92 Score=42.91 Aligned_cols=21 Identities=24% Similarity=0.165 Sum_probs=16.6
Q ss_pred CEEEEccCCChHhHHHHHHHH
Q 010357 58 HVLVNAATGTGKTVAYLAPII 78 (512)
Q Consensus 58 ~~lv~~pTGsGKT~~~~~~~~ 78 (512)
.+++.||+|+|||..+...+.
T Consensus 40 ~~ll~G~~G~GKT~la~~la~ 60 (373)
T 1jr3_A 40 AYLFSGTRGVGKTSIARLLAK 60 (373)
T ss_dssp EEEEESCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999987655443
No 172
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=92.16 E-value=0.12 Score=59.14 Aligned_cols=41 Identities=22% Similarity=0.251 Sum_probs=33.2
Q ss_pred cCCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcHH
Q 010357 55 SGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRE 104 (512)
Q Consensus 55 ~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~ 104 (512)
.++++++.+|+|+|||..+...+.+...+ +.+++|+..-..
T Consensus 1426 ~g~~vll~GppGtGKT~LA~ala~ea~~~---------G~~v~Fi~~e~~ 1466 (2050)
T 3cmu_A 1426 MGRIVEIYGPESSGKTTLTLQVIAAAQRE---------GKTCAFIDAEHA 1466 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHHTT---------TCCEEEECTTSC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc---------CCcEEEEEcccc
Confidence 36889999999999999988887776644 777899886644
No 173
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=92.05 E-value=0.23 Score=45.78 Aligned_cols=26 Identities=15% Similarity=0.128 Sum_probs=21.0
Q ss_pred CCCEEEEccCCChHhHHHHHHHHHHH
Q 010357 56 GRHVLVNAATGTGKTVAYLAPIINHL 81 (512)
Q Consensus 56 ~~~~lv~~pTGsGKT~~~~~~~~~~~ 81 (512)
++++++.||+|+|||..+...+....
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~ 177 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELS 177 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHH
Confidence 57899999999999988776655544
No 174
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.89 E-value=0.18 Score=48.67 Aligned_cols=63 Identities=25% Similarity=0.300 Sum_probs=39.5
Q ss_pred CccCCcccCCCCHHHHHHHHHhcCCCCCcHHHHHHHHH--hhcCCCEEEEccCCChHhHHHHHHHHHH
Q 010357 15 FASCSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPV--ILSGRHVLVNAATGTGKTVAYLAPIINH 80 (512)
Q Consensus 15 ~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~Q~~~~~~--~~~~~~~lv~~pTGsGKT~~~~~~~~~~ 80 (512)
.+..+|++.+--++..+.+.+..-+ |..+. +.+.. +.-.+.+|+.||+|+|||+.+-..+-+.
T Consensus 175 ~p~v~~~digGl~~~k~~l~e~v~~--pl~~p-~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~ 239 (437)
T 4b4t_L 175 QGEITFDGIGGLTEQIRELREVIEL--PLKNP-EIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATI 239 (437)
T ss_dssp SCSSCSGGGCSCHHHHHHHHHHHHH--HHHCH-HHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCCCChhHhCChHHHHHHHHHHHHH--HHhCH-HHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 4556899987777777777664311 11111 22222 2234679999999999998876655543
No 175
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=91.67 E-value=0.37 Score=42.46 Aligned_cols=25 Identities=20% Similarity=0.134 Sum_probs=20.4
Q ss_pred cCCCEEEEccCCChHhHHHHHHHHH
Q 010357 55 SGRHVLVNAATGTGKTVAYLAPIIN 79 (512)
Q Consensus 55 ~~~~~lv~~pTGsGKT~~~~~~~~~ 79 (512)
.|.-+++.+|+|+|||..+...+..
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 5677899999999999887766654
No 176
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=91.52 E-value=0.098 Score=49.17 Aligned_cols=40 Identities=25% Similarity=0.282 Sum_probs=28.5
Q ss_pred CCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcHH
Q 010357 56 GRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRE 104 (512)
Q Consensus 56 ~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~ 104 (512)
|+-+++.+|+|+|||..++..+...... +.+++|+..-..
T Consensus 61 G~i~~I~GppGsGKSTLal~la~~~~~~---------gg~VlyId~E~s 100 (356)
T 3hr8_A 61 GRIVEIFGQESSGKTTLALHAIAEAQKM---------GGVAAFIDAEHA 100 (356)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHHHHT---------TCCEEEEESSCC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhc---------CCeEEEEecccc
Confidence 4567899999999998776666554433 556888866543
No 177
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.36 E-value=0.28 Score=47.51 Aligned_cols=63 Identities=22% Similarity=0.293 Sum_probs=41.1
Q ss_pred CccCCcccCCCCHHHHHHHHHhcCCCCCcHHHHHHHHH--hhcCCCEEEEccCCChHhHHHHHHHHHH
Q 010357 15 FASCSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPV--ILSGRHVLVNAATGTGKTVAYLAPIINH 80 (512)
Q Consensus 15 ~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~Q~~~~~~--~~~~~~~lv~~pTGsGKT~~~~~~~~~~ 80 (512)
.+..+|++.+--++..+.+++..-+ |..+ .+.+.. +.-.+.+|+.||+|+|||+.+-..+-+.
T Consensus 203 ~P~vt~~DIgGl~~~k~~L~e~V~~--pl~~-pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~ 267 (467)
T 4b4t_H 203 KPDVTYSDVGGCKDQIEKLREVVEL--PLLS-PERFATLGIDPPKGILLYGPPGTGKTLCARAVANRT 267 (467)
T ss_dssp SCSCCCSSCTTCHHHHHHHHHHTHH--HHHC-HHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHhccHHHHHHHHHHHHHH--HhcC-HHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhcc
Confidence 4567899998888888888765311 1111 122222 2245679999999999998876655543
No 178
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=90.99 E-value=0.78 Score=44.23 Aligned_cols=83 Identities=17% Similarity=0.219 Sum_probs=65.7
Q ss_pred ccCceEEEEeecchhhhhHHHhhhhhcCCCCCCChhHHHhhhhccceeeecCCCCHHHHHHHHHhhhcCCCcEEEeeccc
Q 010357 317 EVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDVA 396 (512)
Q Consensus 317 ~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~l~g~~~~~~r~~~~~~f~~~~~~vLvaT~~~ 396 (512)
..+.+++|.+|++..+..+++.+..... .+..+..++|+.+..++....+.+..++.+|+|+|+-.
T Consensus 62 ~~~~~~lil~Pt~~L~~q~~~~~~~~~~--------------~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~ 127 (414)
T 3oiy_A 62 RKGKKSALVFPTVTLVKQTLERLQKLAD--------------EKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQF 127 (414)
T ss_dssp TTTCCEEEEESSHHHHHHHHHHHHHHCC--------------SSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHH
T ss_pred cCCCEEEEEECCHHHHHHHHHHHHHHcc--------------CCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHH
Confidence 3567999999999999999999988532 17789999999999999999999999989999999642
Q ss_pred c----cCCCCCCCcEEEEeCC
Q 010357 397 A----RGLDFPKVKCIIQYDS 413 (512)
Q Consensus 397 ~----~Gldip~~~~VI~~~~ 413 (512)
- .-++...+++||.-..
T Consensus 128 l~~~l~~~~~~~~~~iViDEa 148 (414)
T 3oiy_A 128 VSKNREKLSQKRFDFVFVDDV 148 (414)
T ss_dssp HHHCHHHHTTCCCSEEEESCH
T ss_pred HHHHHHHhccccccEEEEeCh
Confidence 1 1145557888775443
No 179
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.76 E-value=0.3 Score=47.12 Aligned_cols=63 Identities=21% Similarity=0.221 Sum_probs=39.1
Q ss_pred CccCCcccCCCCHHHHHHHHHhcC--CCCCcHHHHHHHHHhhcCCCEEEEccCCChHhHHHHHHHHHH
Q 010357 15 FASCSFSSLGLHSTLCDQLRERLG--FEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINH 80 (512)
Q Consensus 15 ~~~~~~~~~~l~~~~~~~l~~~~~--~~~~~~~Q~~~~~~~~~~~~~lv~~pTGsGKT~~~~~~~~~~ 80 (512)
.+..+|++.+--.+..+.+.+..- +.+|--++.-. +.-.+.+|+.||+|+|||+.+-..+-+.
T Consensus 166 ~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g---~~~prGiLL~GPPGtGKT~lakAiA~~~ 230 (428)
T 4b4t_K 166 KPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIG---IDPPRGVLLYGPPGTGKTMLVKAVANST 230 (428)
T ss_dssp SCSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHC---CCCCCEEEEESCTTTTHHHHHHHHHHHH
T ss_pred CCCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCC---CCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 455689998777777777765431 11121122111 2234679999999999998876655443
No 180
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.07 E-value=0.35 Score=46.34 Aligned_cols=63 Identities=22% Similarity=0.287 Sum_probs=40.2
Q ss_pred CccCCcccCCCCHHHHHHHHHhcC--CCCCcHHHHHHHHHhhcCCCEEEEccCCChHhHHHHHHHHHH
Q 010357 15 FASCSFSSLGLHSTLCDQLRERLG--FEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIINH 80 (512)
Q Consensus 15 ~~~~~~~~~~l~~~~~~~l~~~~~--~~~~~~~Q~~~~~~~~~~~~~lv~~pTGsGKT~~~~~~~~~~ 80 (512)
-+..+|++.+=-++..+.+++..- +.+|--++.-. +--.+.+|+.||+|+|||+.+-..+-+.
T Consensus 176 ~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~G---i~~prGvLLyGPPGTGKTlLAkAiA~e~ 240 (437)
T 4b4t_I 176 SPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMG---IKPPKGVILYGAPGTGKTLLAKAVANQT 240 (437)
T ss_dssp SCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHT---CCCCSEEEEESSTTTTHHHHHHHHHHHH
T ss_pred CCCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCC---CCCCCCCceECCCCchHHHHHHHHHHHh
Confidence 455689998766777777766431 22232222221 1234679999999999998876665554
No 181
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=89.97 E-value=0.3 Score=47.67 Aligned_cols=44 Identities=34% Similarity=0.464 Sum_probs=31.8
Q ss_pred cCCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcHHHHH
Q 010357 55 SGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCL 107 (512)
Q Consensus 55 ~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~ 107 (512)
...++++.|+||||||......+.+.+.. +..++|+=|..++..
T Consensus 52 ~~~h~~i~G~tGsGKs~~~~~li~~~~~~---------g~~viv~Dpkge~~~ 95 (437)
T 1e9r_A 52 EPRHLLVNGATGTGKSVLLRELAYTGLLR---------GDRMVIVDPNGDMLS 95 (437)
T ss_dssp GGGCEEEEECTTSSHHHHHHHHHHHHHHT---------TCEEEEEEETTHHHH
T ss_pred CcceEEEECCCCCCHHHHHHHHHHHHHHC---------CCcEEEEeCCCchhH
Confidence 34689999999999998754444444433 566888888877753
No 182
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=89.72 E-value=0.39 Score=44.68 Aligned_cols=45 Identities=13% Similarity=-0.027 Sum_probs=28.4
Q ss_pred CCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcH
Q 010357 56 GRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTR 103 (512)
Q Consensus 56 ~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~ 103 (512)
|.-+++.||+|+|||..++..+.+...... ..+.+.+++|+.--.
T Consensus 107 G~i~~i~G~~GsGKT~la~~la~~~~~~~~---~gg~~~~vlyi~~e~ 151 (324)
T 2z43_A 107 RTMTEFFGEFGSGKTQLCHQLSVNVQLPPE---KGGLSGKAVYIDTEG 151 (324)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGG---GTCCSCEEEEEESSS
T ss_pred CcEEEEECCCCCCHhHHHHHHHHHHhcccc---cCCCCCeEEEEECCC
Confidence 456799999999999887776655322100 001245688876543
No 183
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=89.33 E-value=1.7 Score=45.67 Aligned_cols=23 Identities=26% Similarity=0.144 Sum_probs=18.3
Q ss_pred CEEEEccCCChHhHHHHHHHHHH
Q 010357 58 HVLVNAATGTGKTVAYLAPIINH 80 (512)
Q Consensus 58 ~~lv~~pTGsGKT~~~~~~~~~~ 80 (512)
++++.||||+|||..+-..+...
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~l 545 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAESI 545 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 49999999999998876555443
No 184
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=89.26 E-value=3.3 Score=35.53 Aligned_cols=99 Identities=12% Similarity=0.109 Sum_probs=64.3
Q ss_pred CCchHHHHHHHHHhhhccc-cCceEEEEeecchhhhhHHHhhhhhcCCCCCCChhHHHhhhhccceeeecCCCCHHHHHH
Q 010357 299 CGSRLAVLLSILKHLFDTE-VSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRT 377 (512)
Q Consensus 299 ~~~k~~~l~~~l~~~~~~~-~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~l~g~~~~~~r~~ 377 (512)
...|.....-.+...+... .+.+++|.++++..+..+++.++..... .++..+..++|+.+...+..
T Consensus 61 GsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~------------~~~~~v~~~~g~~~~~~~~~ 128 (220)
T 1t6n_A 61 GMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKY------------MPNVKVAVFFGGLSIKKDEE 128 (220)
T ss_dssp TSCHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHHHHHHHHTTT------------STTCCEEEESCCSCHHHHHH
T ss_pred CCchhhhhhHHHHHhhhccCCCEEEEEEeCCHHHHHHHHHHHHHHHhh------------CCCceEEEEeCCCChHHHHH
Confidence 3456554444443333222 2348999999999999998888775321 12567888999987765543
Q ss_pred HHHhhhcCCCcEEEeecc-c-----ccCCCCCCCcEEEEeC
Q 010357 378 TFGAFKTEKKALLLSTDV-A-----ARGLDFPKVKCIIQYD 412 (512)
Q Consensus 378 ~~~~f~~~~~~vLvaT~~-~-----~~Gldip~~~~VI~~~ 412 (512)
.+.++..+|+|+|.- + ...+++.+++++|.-.
T Consensus 129 ---~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDE 166 (220)
T 1t6n_A 129 ---VLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDE 166 (220)
T ss_dssp ---HHHHSCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEES
T ss_pred ---HHhcCCCCEEEeCHHHHHHHHHhCCCCcccCCEEEEcC
Confidence 344566799999953 1 2346677888887544
No 185
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=88.44 E-value=1.6 Score=48.03 Aligned_cols=81 Identities=11% Similarity=0.139 Sum_probs=65.5
Q ss_pred cCceEEEEeecchhhhhHHHhhhhhcCCCCCCChhHHHhhhhccceeeecCCCCHHHHHHHHHhhhcCCCcEEEeec-cc
Q 010357 318 VSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTD-VA 396 (512)
Q Consensus 318 ~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~l~g~~~~~~r~~~~~~f~~~~~~vLvaT~-~~ 396 (512)
.+.+++|.++++..+..+++.+.+.... .+..+..+++..+..++...++.+.+|..+|+|+|. .+
T Consensus 651 ~g~~vlvlvPt~~La~Q~~~~~~~~~~~-------------~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll 717 (1151)
T 2eyq_A 651 NHKQVAVLVPTTLLAQQHYDNFRDRFAN-------------WPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLL 717 (1151)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHHSTT-------------TTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHH
T ss_pred hCCeEEEEechHHHHHHHHHHHHHHhhc-------------CCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHH
Confidence 3569999999999999888888765321 156788899999999999999999999999999994 45
Q ss_pred ccCCCCCCCcEEEEe
Q 010357 397 ARGLDFPKVKCIIQY 411 (512)
Q Consensus 397 ~~Gldip~~~~VI~~ 411 (512)
...+.+.++++||.-
T Consensus 718 ~~~~~~~~l~lvIiD 732 (1151)
T 2eyq_A 718 QSDVKFKDLGLLIVD 732 (1151)
T ss_dssp HSCCCCSSEEEEEEE
T ss_pred hCCccccccceEEEe
Confidence 566788888887743
No 186
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=88.36 E-value=0.92 Score=42.03 Aligned_cols=25 Identities=20% Similarity=0.166 Sum_probs=19.9
Q ss_pred CCCEEEEccCCChHhHHHHHHHHHH
Q 010357 56 GRHVLVNAATGTGKTVAYLAPIINH 80 (512)
Q Consensus 56 ~~~~lv~~pTGsGKT~~~~~~~~~~ 80 (512)
|.-+++.||+|+|||..++..+.+.
T Consensus 98 g~i~~i~G~~gsGKT~la~~la~~~ 122 (322)
T 2i1q_A 98 QSVTEFAGVFGSGKTQIMHQSCVNL 122 (322)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3567899999999998877766653
No 187
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=88.26 E-value=1.4 Score=48.32 Aligned_cols=98 Identities=15% Similarity=0.167 Sum_probs=73.0
Q ss_pred CCchHHHHHHHHHhhhccccCceEEEEeecchhhhhHHHhhhhhcCCCCCCChhHHHhhhhccceeeecCCCCHHHHHHH
Q 010357 299 CGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTT 378 (512)
Q Consensus 299 ~~~k~~~l~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~l~g~~~~~~r~~~ 378 (512)
...|....+..+.... ..+.++||.+|++..+..+++.+..... .+..+..+||+++..+|...
T Consensus 103 GSGKTl~~l~~il~~~--~~~~~~Lil~PtreLa~Q~~~~l~~l~~--------------~~i~v~~l~Gg~~~~er~~~ 166 (1104)
T 4ddu_A 103 GVGKTTFGMMTALWLA--RKGKKSALVFPTVTLVKQTLERLQKLAD--------------EKVKIFGFYSSMKKEEKEKF 166 (1104)
T ss_dssp TCCHHHHHHHHHHHHH--TTTCCEEEEESSHHHHHHHHHHHHTTSC--------------TTSCEEEECTTCCTTHHHHH
T ss_pred CCcHHHHHHHHHHHHH--hcCCeEEEEechHHHHHHHHHHHHHhhC--------------CCCeEEEEeCCCCHHHHHHH
Confidence 4556654444444332 3467999999999999999999988531 16789999999999999999
Q ss_pred HHhhhcCCCcEEEeecccc-c---CCCCCCCcEEEEeC
Q 010357 379 FGAFKTEKKALLLSTDVAA-R---GLDFPKVKCIIQYD 412 (512)
Q Consensus 379 ~~~f~~~~~~vLvaT~~~~-~---Gldip~~~~VI~~~ 412 (512)
.+.+.+|..+|+|+|.-.- . -+++.++++||.-.
T Consensus 167 ~~~l~~g~~~IlV~Tp~rL~~~l~~l~~~~l~~lViDE 204 (1104)
T 4ddu_A 167 EKSFEEDDYHILVFSTQFVSKNREKLSQKRFDFVFVDD 204 (1104)
T ss_dssp HHHHHTSCCSEEEEEHHHHHHSHHHHHTSCCSEEEESC
T ss_pred HHHHhCCCCCEEEECHHHHHHHHHhhcccCcCEEEEeC
Confidence 9999999999999996321 1 14456788887544
No 188
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=88.00 E-value=0.85 Score=48.70 Aligned_cols=25 Identities=16% Similarity=0.108 Sum_probs=19.4
Q ss_pred CCCEEEEccCCChHhHHHHHHHHHH
Q 010357 56 GRHVLVNAATGTGKTVAYLAPIINH 80 (512)
Q Consensus 56 ~~~~lv~~pTGsGKT~~~~~~~~~~ 80 (512)
.+++++.||+|+|||..+-..+...
T Consensus 191 ~~~vlL~G~pG~GKT~la~~la~~l 215 (854)
T 1qvr_A 191 KNNPVLIGEPGVGKTAIVEGLAQRI 215 (854)
T ss_dssp CCCCEEEECTTSCHHHHHHHHHHHH
T ss_pred CCceEEEcCCCCCHHHHHHHHHHHH
Confidence 3579999999999998766555443
No 189
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=87.63 E-value=0.96 Score=42.75 Aligned_cols=24 Identities=25% Similarity=0.290 Sum_probs=19.0
Q ss_pred cCCCEEEEccCCChHhHHHHHHHH
Q 010357 55 SGRHVLVNAATGTGKTVAYLAPII 78 (512)
Q Consensus 55 ~~~~~lv~~pTGsGKT~~~~~~~~ 78 (512)
...++++.||+|+|||.++-..+.
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~ 73 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLAR 73 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999987655443
No 190
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=87.55 E-value=0.43 Score=42.24 Aligned_cols=40 Identities=28% Similarity=0.311 Sum_probs=28.3
Q ss_pred cCCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCc
Q 010357 55 SGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPT 102 (512)
Q Consensus 55 ~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt 102 (512)
.|.-+++.|++|+|||..++..+.+.... .+..++|++-.
T Consensus 29 ~G~l~~i~G~pG~GKT~l~l~~~~~~~~~--------~~~~v~~~s~E 68 (251)
T 2zts_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKGAEE--------YGEPGVFVTLE 68 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHHH--------HCCCEEEEESS
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHh--------cCCCceeeccc
Confidence 45678999999999998877766665443 14457776543
No 191
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=87.48 E-value=0.62 Score=44.63 Aligned_cols=41 Identities=20% Similarity=0.369 Sum_probs=30.5
Q ss_pred cCCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcHH
Q 010357 55 SGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRE 104 (512)
Q Consensus 55 ~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~ 104 (512)
.+.++++.||||+|||...-..+...... +.+++++=|..+
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~~---------~~~~~~~D~~~~ 74 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREYMQ---------GSRVIIIDPERE 74 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHHTT---------TCCEEEEESSCC
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHHHC---------CCEEEEEeCCcC
Confidence 56689999999999998776655555433 566888877755
No 192
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=87.05 E-value=0.97 Score=47.33 Aligned_cols=21 Identities=38% Similarity=0.469 Sum_probs=17.2
Q ss_pred CCEEEEccCCChHhHHHHHHH
Q 010357 57 RHVLVNAATGTGKTVAYLAPI 77 (512)
Q Consensus 57 ~~~lv~~pTGsGKT~~~~~~~ 77 (512)
+.+|+.||+|+|||+.+-..+
T Consensus 239 ~GILL~GPPGTGKT~LAraiA 259 (806)
T 3cf2_A 239 RGILLYGPPGTGKTLIARAVA 259 (806)
T ss_dssp CEEEEECCTTSCHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 579999999999998765443
No 193
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=86.92 E-value=0.22 Score=46.32 Aligned_cols=60 Identities=18% Similarity=0.150 Sum_probs=36.7
Q ss_pred ccCCcccCCCCHHHHHHHHHhcC--CCCCcHHHHHHHHHhhcCCCEEEEccCCChHhHHHHHHHHH
Q 010357 16 ASCSFSSLGLHSTLCDQLRERLG--FEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIIN 79 (512)
Q Consensus 16 ~~~~~~~~~l~~~~~~~l~~~~~--~~~~~~~Q~~~~~~~~~~~~~lv~~pTGsGKT~~~~~~~~~ 79 (512)
+..+|++++-.+...+.+.+... +..|..++ ......+.+++.||+|+|||..+-..+.+
T Consensus 7 ~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~----~~~~~~~~iLL~GppGtGKT~la~ala~~ 68 (322)
T 1xwi_A 7 PNVKWSDVAGLEGAKEALKEAVILPIKFPHLFT----GKRTPWRGILLFGPPGTGKSYLAKAVATE 68 (322)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHHHHHHCGGGSC----TTCCCCSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHHhCHHHHh----CCCCCCceEEEECCCCccHHHHHHHHHHH
Confidence 45689998877888888865321 11111111 01112367999999999999877655433
No 194
>2l8b_A Protein TRAI, DNA helicase I; RECD, hydrolase; NMR {Escherichia coli}
Probab=86.69 E-value=0.92 Score=37.57 Aligned_cols=58 Identities=14% Similarity=0.206 Sum_probs=40.8
Q ss_pred cHHHHHHHHHhhcC--CCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcHHHHHH
Q 010357 43 TKVQAQAIPVILSG--RHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQ 108 (512)
Q Consensus 43 ~~~Q~~~~~~~~~~--~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q 108 (512)
.+-|..++..++.. .-.+|.++-|++||-..+.-++..... .|..+.+++|+..-...
T Consensus 36 ~~~~~~a~~~l~~s~~~~~iv~g~ggs~~~~~~~a~L~~~a~~--------~Gr~V~vLAp~~~s~~~ 95 (189)
T 2l8b_A 36 TAGYSDAVSVLAQDRPSLAIVSGQGGAAGQRERVAELVMMARE--------QGREVQIIAADRRSQMN 95 (189)
T ss_dssp HHHHHHHHHHHHHHSCCEECCBCSSCSHHHHHHHHHHHHHHHH--------TTCCEEEECSTTHHHHH
T ss_pred CccchhHHHHHhccCCceEEEecccchHHHHHHHHHHHHHHHh--------cCeEEEEEcCchHHHHH
Confidence 45688888887643 345789999999998854444433333 47789999999765443
No 195
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=86.66 E-value=1.3 Score=42.43 Aligned_cols=43 Identities=12% Similarity=-0.050 Sum_probs=26.1
Q ss_pred CCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcC
Q 010357 56 GRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVP 101 (512)
Q Consensus 56 ~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P 101 (512)
|.-+.+.+|+|+|||..+...+...+... ...+.+..++++.-
T Consensus 178 Gei~~I~G~sGsGKTTLl~~la~~~~~p~---~~Gg~~~~viyid~ 220 (400)
T 3lda_A 178 GSITELFGEFRTGKSQLCHTLAVTCQIPL---DIGGGEGKCLYIDT 220 (400)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCG---GGTCCSSEEEEEES
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHhccCc---ccCCCCCcEEEEeC
Confidence 35678999999999977765554433211 00112456777754
No 196
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=86.25 E-value=0.95 Score=41.81 Aligned_cols=53 Identities=17% Similarity=-0.004 Sum_probs=34.6
Q ss_pred hhcCCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHH
Q 010357 53 ILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHK 115 (512)
Q Consensus 53 ~~~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~ 115 (512)
+..|.-+++.|++|+|||..++..+.+...+ +..+++++.- .-..|+...+..
T Consensus 65 l~~G~l~li~G~pG~GKTtl~l~ia~~~a~~---------g~~vl~~slE-~s~~~l~~R~~~ 117 (315)
T 3bh0_A 65 YKRRNFVLIAARPSMGKTAFALKQAKNMSDN---------DDVVNLHSLE-MGKKENIKRLIV 117 (315)
T ss_dssp BCTTCEEEEECCTTSSHHHHHHHHHHHHHTT---------TCEEEEEESS-SCHHHHHHHHHH
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHHHHc---------CCeEEEEECC-CCHHHHHHHHHH
Confidence 3456678999999999998877777666543 4568887643 223444444433
No 197
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=86.06 E-value=0.84 Score=45.07 Aligned_cols=37 Identities=16% Similarity=0.201 Sum_probs=25.6
Q ss_pred CCCCcHHHHHHHHHhhcCCCEEEEccCCChHhHHHHH
Q 010357 39 FEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLA 75 (512)
Q Consensus 39 ~~~~~~~Q~~~~~~~~~~~~~lv~~pTGsGKT~~~~~ 75 (512)
+..-...=..+...+..+.++++.||+|+|||..+-.
T Consensus 24 ivGq~~~i~~l~~al~~~~~VLL~GpPGtGKT~LAra 60 (500)
T 3nbx_X 24 LYERSHAIRLCLLAALSGESVFLLGPPGIAKSLIARR 60 (500)
T ss_dssp CSSCHHHHHHHHHHHHHTCEEEEECCSSSSHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcCCeeEeecCchHHHHHHHHH
Confidence 3323333344555566788999999999999976543
No 198
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=85.52 E-value=1.1 Score=38.11 Aligned_cols=47 Identities=17% Similarity=0.175 Sum_probs=29.9
Q ss_pred HHHHHHHHHhcCCCCCcHHHHHHHHHhhcC----CCEEEEccCCChHhHHHHHH
Q 010357 27 STLCDQLRERLGFEAPTKVQAQAIPVILSG----RHVLVNAATGTGKTVAYLAP 76 (512)
Q Consensus 27 ~~~~~~l~~~~~~~~~~~~Q~~~~~~~~~~----~~~lv~~pTGsGKT~~~~~~ 76 (512)
..+.+.|+ .-|+ ++-.+ ...+..++.+ +.+++.||.|+|||..+...
T Consensus 28 ~~I~~~l~-yq~~-~~~~f-~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a~al 78 (212)
T 1tue_A 28 RPIVQFLR-YQQI-EFITF-LGALKSFLKGTPKKNCLVFCGPANTGKSYFGMSF 78 (212)
T ss_dssp HHHHHHHH-HTTC-CHHHH-HHHHHHHHHTCTTCSEEEEESCGGGCHHHHHHHH
T ss_pred HHHHHHHH-HcCc-CHHHH-HHHHHHHHhcCCcccEEEEECCCCCCHHHHHHHH
Confidence 46666663 2243 35555 4455555544 35899999999999776443
No 199
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=85.46 E-value=0.85 Score=39.17 Aligned_cols=33 Identities=27% Similarity=0.224 Sum_probs=26.5
Q ss_pred cHHHHHHHHHhhcCCCEEEEccCCChHhHHHHH
Q 010357 43 TKVQAQAIPVILSGRHVLVNAATGTGKTVAYLA 75 (512)
Q Consensus 43 ~~~Q~~~~~~~~~~~~~lv~~pTGsGKT~~~~~ 75 (512)
+..|..++..+..|.-+.+.||.|+|||..+-+
T Consensus 9 ~~g~~~~l~~i~~Ge~~~liG~nGsGKSTLl~~ 41 (208)
T 3b85_A 9 TLGQKHYVDAIDTNTIVFGLGPAGSGKTYLAMA 41 (208)
T ss_dssp SHHHHHHHHHHHHCSEEEEECCTTSSTTHHHHH
T ss_pred CHhHHHHHHhccCCCEEEEECCCCCCHHHHHHH
Confidence 344667888888898899999999999966543
No 200
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=85.43 E-value=0.48 Score=43.33 Aligned_cols=59 Identities=17% Similarity=0.233 Sum_probs=35.8
Q ss_pred ccCCcccCCCCHHHHHHHHHhcCCCCCcHHHHHHHHHh-hcCCCEEEEccCCChHhHHHHHHH
Q 010357 16 ASCSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVI-LSGRHVLVNAATGTGKTVAYLAPI 77 (512)
Q Consensus 16 ~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~Q~~~~~~~-~~~~~~lv~~pTGsGKT~~~~~~~ 77 (512)
...+|+++.-.+...+.+.+.... +..+ .+.+..+ ...+.+++.||+|+|||..+-..+
T Consensus 16 ~~~~~~~i~G~~~~~~~l~~~i~~--~~~~-~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la 75 (297)
T 3b9p_A 16 AKVEWTDIAGQDVAKQALQEMVIL--PSVR-PELFTGLRAPAKGLLLFGPPGNGKTLLARAVA 75 (297)
T ss_dssp SCCCGGGSCCCHHHHHHHHHHTHH--HHHC-GGGSCGGGCCCSEEEEESSSSSCHHHHHHHHH
T ss_pred CCCCHHHhCChHHHHHHHHHHHHh--hhhC-HHHHhcCCCCCCeEEEECcCCCCHHHHHHHHH
Confidence 456788887778888888654211 1000 0001111 235689999999999998765544
No 201
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=84.92 E-value=5.8 Score=33.46 Aligned_cols=95 Identities=12% Similarity=0.098 Sum_probs=59.3
Q ss_pred CchHHH-HHHHHHhhhccccCceEEEEeecchhhhhHHHhhhhhcCCCCCCChhHHHhhhhccceeeecCCCCHHHHHHH
Q 010357 300 GSRLAV-LLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTT 378 (512)
Q Consensus 300 ~~k~~~-l~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~l~g~~~~~~r~~~ 378 (512)
..|... +...+........+.+++|.++++..+..+++.+...... .++..+..++|+.+..+....
T Consensus 51 sGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~------------~~~~~~~~~~g~~~~~~~~~~ 118 (206)
T 1vec_A 51 TGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQICIQVSKH------------MGGAKVMATTGGTNLRDDIMR 118 (206)
T ss_dssp STTHHHHHHHHHHHCCTTSCSCCEEEECSCHHHHHHHHHHHHHHTTT------------SSSCCEEEECSSSCHHHHHHH
T ss_pred CchHHHHHHHHHHHhcccCCCeeEEEEeCcHHHHHHHHHHHHHHHhh------------cCCceEEEEeCCccHHHHHHh
Confidence 345543 3334443332334568999999999999998888775322 125678888998776554332
Q ss_pred HHhhhcCCCcEEEeecc-----ccc-CCCCCCCcEEEE
Q 010357 379 FGAFKTEKKALLLSTDV-----AAR-GLDFPKVKCIIQ 410 (512)
Q Consensus 379 ~~~f~~~~~~vLvaT~~-----~~~-Gldip~~~~VI~ 410 (512)
+ .+..+|+|+|.- +.. .+++.+++++|.
T Consensus 119 ~----~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lVi 152 (206)
T 1vec_A 119 L----DDTVHVVIATPGRILDLIKKGVAKVDHVQMIVL 152 (206)
T ss_dssp T----TSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEE
T ss_pred c----CCCCCEEEeCHHHHHHHHHcCCcCcccCCEEEE
Confidence 2 245789999962 222 345667777774
No 202
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=84.84 E-value=0.92 Score=40.59 Aligned_cols=23 Identities=26% Similarity=0.261 Sum_probs=18.3
Q ss_pred hcCCCEEEEccCCChHhHHHHHH
Q 010357 54 LSGRHVLVNAATGTGKTVAYLAP 76 (512)
Q Consensus 54 ~~~~~~lv~~pTGsGKT~~~~~~ 76 (512)
..+.++++.||+|+|||..+-..
T Consensus 27 ~~~~~vll~G~~GtGKt~la~~i 49 (265)
T 2bjv_A 27 PLDKPVLIIGERGTGKELIASRL 49 (265)
T ss_dssp TSCSCEEEECCTTSCHHHHHHHH
T ss_pred CCCCCEEEECCCCCcHHHHHHHH
Confidence 35678999999999999765443
No 203
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=84.76 E-value=0.33 Score=43.66 Aligned_cols=59 Identities=20% Similarity=0.218 Sum_probs=32.5
Q ss_pred ccCCcccCCCCHHHHHHHHHhcCCCCCcHHHHHHHHHh--hcCCCEEEEccCCChHhHHHHHHHH
Q 010357 16 ASCSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVI--LSGRHVLVNAATGTGKTVAYLAPII 78 (512)
Q Consensus 16 ~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~Q~~~~~~~--~~~~~~lv~~pTGsGKT~~~~~~~~ 78 (512)
+..+|+++.-.+...+.+.+...+ ..+ .+.+..+ ...+.+++.||+|+|||..+-..+.
T Consensus 6 ~~~~~~~i~G~~~~~~~l~~~~~~---~~~-~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~ 66 (268)
T 2r62_A 6 PNVRFKDMAGNEEAKEEVVEIVDF---LKY-PERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAG 66 (268)
T ss_dssp CCCCSTTSSSCTTTHHHHHHHHHH---HHC-HHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHH
T ss_pred CCCCHHHhCCcHHHHHHHHHHHHH---HHC-hHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHH
Confidence 445677765555555555432111 000 1112211 1245689999999999988765544
No 204
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=84.63 E-value=1.9 Score=39.41 Aligned_cols=23 Identities=26% Similarity=0.255 Sum_probs=18.6
Q ss_pred CCCEEEEccCCChHhHHHHHHHH
Q 010357 56 GRHVLVNAATGTGKTVAYLAPII 78 (512)
Q Consensus 56 ~~~~lv~~pTGsGKT~~~~~~~~ 78 (512)
..++++.||+|+|||..+-..+.
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~ 72 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAK 72 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 56899999999999987655443
No 205
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=84.46 E-value=0.65 Score=43.25 Aligned_cols=26 Identities=27% Similarity=0.371 Sum_probs=20.6
Q ss_pred HHhhcCCCEEEEccCCChHhHHHHHH
Q 010357 51 PVILSGRHVLVNAATGTGKTVAYLAP 76 (512)
Q Consensus 51 ~~~~~~~~~lv~~pTGsGKT~~~~~~ 76 (512)
..+..++++++.||+|+|||..+-..
T Consensus 41 ~~l~~~~~vll~G~pGtGKT~la~~l 66 (331)
T 2r44_A 41 IGICTGGHILLEGVPGLAKTLSVNTL 66 (331)
T ss_dssp HHHHHTCCEEEESCCCHHHHHHHHHH
T ss_pred HHHHcCCeEEEECCCCCcHHHHHHHH
Confidence 34456889999999999999776543
No 206
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=84.41 E-value=1.2 Score=42.92 Aligned_cols=32 Identities=22% Similarity=0.359 Sum_probs=21.3
Q ss_pred HHHHHHHHHhh--cCCCEEEEccCCChHhHHHHH
Q 010357 44 KVQAQAIPVIL--SGRHVLVNAATGTGKTVAYLA 75 (512)
Q Consensus 44 ~~Q~~~~~~~~--~~~~~lv~~pTGsGKT~~~~~ 75 (512)
+-+..++..++ .+..+++.||||||||...-.
T Consensus 153 ~~~~~~L~~l~~~~ggii~I~GpnGSGKTTlL~a 186 (418)
T 1p9r_A 153 AHNHDNFRRLIKRPHGIILVTGPTGSGKSTTLYA 186 (418)
T ss_dssp HHHHHHHHHHHTSSSEEEEEECSTTSCHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHH
Confidence 34455555444 344578999999999966443
No 207
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=84.39 E-value=0.87 Score=45.15 Aligned_cols=32 Identities=19% Similarity=0.087 Sum_probs=22.9
Q ss_pred CcHHHHHHHHH-hhcCCCEEEEccCCChHhHHH
Q 010357 42 PTKVQAQAIPV-ILSGRHVLVNAATGTGKTVAY 73 (512)
Q Consensus 42 ~~~~Q~~~~~~-~~~~~~~lv~~pTGsGKT~~~ 73 (512)
+.+.+...+.. +..|.++++.||||||||...
T Consensus 245 ~~~~~l~~l~~~v~~g~~i~I~GptGSGKTTlL 277 (511)
T 2oap_1 245 VPSGVLAYLWLAIEHKFSAIVVGETASGKTTTL 277 (511)
T ss_dssp SCHHHHHHHHHHHHTTCCEEEEESTTSSHHHHH
T ss_pred CCHHHHHHHHHHHhCCCEEEEECCCCCCHHHHH
Confidence 34445555543 447888999999999999654
No 208
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=84.15 E-value=4.6 Score=35.56 Aligned_cols=96 Identities=14% Similarity=0.211 Sum_probs=61.1
Q ss_pred CchHHH-HHHHHHhhhccccCceEEEEeecchhhhhHHHhhhhhcCCCCCCChhHHHhhhhccceeeecCCCCHHHHHHH
Q 010357 300 GSRLAV-LLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTT 378 (512)
Q Consensus 300 ~~k~~~-l~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~l~g~~~~~~r~~~ 378 (512)
..|... +...+..+.....+.+++|.++++..+..+++.++..... .+..+..++|+.+...+...
T Consensus 91 sGKT~~~~~~il~~l~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~~~-------------~~~~~~~~~g~~~~~~~~~~ 157 (249)
T 3ber_A 91 SGKTGAFALPILNALLETPQRLFALVLTPTRELAFQISEQFEALGSS-------------IGVQSAVIVGGIDSMSQSLA 157 (249)
T ss_dssp SCHHHHHHHHHHHHHHHSCCSSCEEEECSSHHHHHHHHHHHHHHHGG-------------GTCCEEEECTTSCHHHHHHH
T ss_pred CCchhHhHHHHHHHHhcCCCCceEEEEeCCHHHHHHHHHHHHHHhcc-------------CCeeEEEEECCCChHHHHHH
Confidence 445544 3333433333334568999999999999988888765211 15678888998876655433
Q ss_pred HHhhhcCCCcEEEeecc-----cc--cCCCCCCCcEEEEeC
Q 010357 379 FGAFKTEKKALLLSTDV-----AA--RGLDFPKVKCIIQYD 412 (512)
Q Consensus 379 ~~~f~~~~~~vLvaT~~-----~~--~Gldip~~~~VI~~~ 412 (512)
+ .+..+|+|+|.- +. .++++..+++||.-.
T Consensus 158 ~----~~~~~I~v~Tp~~l~~~l~~~~~~~l~~~~~lViDE 194 (249)
T 3ber_A 158 L----AKKPHIIIATPGRLIDHLENTKGFNLRALKYLVMDE 194 (249)
T ss_dssp H----HTCCSEEEECHHHHHHHHHHSTTCCCTTCCEEEECS
T ss_pred h----cCCCCEEEECHHHHHHHHHcCCCcCccccCEEEEcC
Confidence 3 245789999952 11 346777788777533
No 209
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=83.88 E-value=1 Score=42.39 Aligned_cols=39 Identities=23% Similarity=0.258 Sum_probs=29.6
Q ss_pred cCCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCc
Q 010357 55 SGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPT 102 (512)
Q Consensus 55 ~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt 102 (512)
.|+-+++.+++|+|||..++..+.+.... +.+++|+..-
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~~~~---------g~~vlyid~E 100 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAAQRE---------GKTCAFIDAE 100 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHT---------TCCEEEEESS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHC---------CCeEEEEeCC
Confidence 34668999999999999888777766544 5568887753
No 210
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=83.86 E-value=1.2 Score=38.61 Aligned_cols=26 Identities=38% Similarity=0.524 Sum_probs=21.1
Q ss_pred CEEEEccCCChHhHHHHHHHHHHHhh
Q 010357 58 HVLVNAATGTGKTVAYLAPIINHLQS 83 (512)
Q Consensus 58 ~~lv~~pTGsGKT~~~~~~~~~~~~~ 83 (512)
++++.++.|+|||..++-.+......
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l~~~ 33 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQLRQ 33 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHC
Confidence 58899999999999987777666544
No 211
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=83.63 E-value=0.55 Score=39.72 Aligned_cols=23 Identities=30% Similarity=0.479 Sum_probs=17.4
Q ss_pred cCCCEEEEccCCChHhHHHHHHH
Q 010357 55 SGRHVLVNAATGTGKTVAYLAPI 77 (512)
Q Consensus 55 ~~~~~lv~~pTGsGKT~~~~~~~ 77 (512)
.++-+++.||||+|||..++..+
T Consensus 33 ~g~~ilI~GpsGsGKStLA~~La 55 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETALELV 55 (205)
T ss_dssp TTEEEEEECCCTTTTHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHH
Confidence 35568999999999996655443
No 212
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=83.62 E-value=4.3 Score=35.15 Aligned_cols=95 Identities=12% Similarity=0.077 Sum_probs=63.4
Q ss_pred CCchHHH-HHHHHHhhhccccCceEEEEeecchhhhhHHHhhhhhcCCCCCCChhHHHhhhhccceeeecCCCCHHHHHH
Q 010357 299 CGSRLAV-LLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRT 377 (512)
Q Consensus 299 ~~~k~~~-l~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~l~g~~~~~~r~~ 377 (512)
...|... +...+..+.....+.+++|.++++..+..+++.+....... ++..+..++|+.+..++..
T Consensus 71 GsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~------------~~~~~~~~~g~~~~~~~~~ 138 (230)
T 2oxc_A 71 GTGKTCVFSTIALDSLVLENLSTQILILAPTREIAVQIHSVITAIGIKM------------EGLECHVFIGGTPLSQDKT 138 (230)
T ss_dssp TSSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTS------------TTCCEEEECTTSCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHhcCCCceEEEEeCCHHHHHHHHHHHHHHhccc------------CCceEEEEeCCCCHHHHHH
Confidence 3556654 44455554434456799999999999999999888763221 1567888899988766654
Q ss_pred HHHhhhcCCCcEEEeecc-c-----ccCCCCCCCcEEEE
Q 010357 378 TFGAFKTEKKALLLSTDV-A-----ARGLDFPKVKCIIQ 410 (512)
Q Consensus 378 ~~~~f~~~~~~vLvaT~~-~-----~~Gldip~~~~VI~ 410 (512)
.+ ...+|+|+|.- + ...+++.+++++|.
T Consensus 139 ~~-----~~~~Iiv~Tp~~l~~~~~~~~~~~~~~~~lVi 172 (230)
T 2oxc_A 139 RL-----KKCHIAVGSPGRIKQLIELDYLNPGSIRLFIL 172 (230)
T ss_dssp HT-----TSCSEEEECHHHHHHHHHTTSSCGGGCCEEEE
T ss_pred hc-----cCCCEEEECHHHHHHHHhcCCcccccCCEEEe
Confidence 43 24689999963 1 12456666777664
No 213
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=83.48 E-value=3.8 Score=35.77 Aligned_cols=96 Identities=14% Similarity=0.100 Sum_probs=53.4
Q ss_pred chHHH-HHHHHHhhhccccCceEEEEeecchhhhhHHHhhhhhcCCCCCCChhHHHhhhhccceeeecCCCCHHHHHHHH
Q 010357 301 SRLAV-LLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTF 379 (512)
Q Consensus 301 ~k~~~-l~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~l~g~~~~~~r~~~~ 379 (512)
.|... +...+..+.....+.+++|.++++..+..+++.+....... +..+..++|+.+... ..
T Consensus 79 GKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~-------------~~~~~~~~g~~~~~~---~~ 142 (237)
T 3bor_A 79 GKTATFAISILQQLEIEFKETQALVLAPTRELAQQIQKVILALGDYM-------------GATCHACIGGTNVRN---EM 142 (237)
T ss_dssp HHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTT-------------TCCEEEECC-----------
T ss_pred cHHHHHHHHHHHHHHhcCCCceEEEEECcHHHHHHHHHHHHHHhhhc-------------CceEEEEECCCchHH---HH
Confidence 45443 33334333223345799999999999999999887763211 455666677654332 23
Q ss_pred HhhhcCCCcEEEeec-----cccc-CCCCCCCcEEEEeC
Q 010357 380 GAFKTEKKALLLSTD-----VAAR-GLDFPKVKCIIQYD 412 (512)
Q Consensus 380 ~~f~~~~~~vLvaT~-----~~~~-Gldip~~~~VI~~~ 412 (512)
+.+..+..+|+|+|. .+.. .+++..+++||.-.
T Consensus 143 ~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lViDE 181 (237)
T 3bor_A 143 QKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDE 181 (237)
T ss_dssp -----CCCSEEEECHHHHHHHHHTTSSCSTTCCEEEEES
T ss_pred HHHhcCCCCEEEECHHHHHHHHHhCCcCcccCcEEEECC
Confidence 345566689999994 2333 35666778777533
No 214
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=83.42 E-value=1.4 Score=42.77 Aligned_cols=41 Identities=20% Similarity=0.104 Sum_probs=30.8
Q ss_pred hhcCCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCc
Q 010357 53 ILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPT 102 (512)
Q Consensus 53 ~~~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt 102 (512)
+..|.-+++.|++|+|||..++..+.+...+ +.+++|++.-
T Consensus 194 l~~G~liiIaG~pG~GKTtlal~ia~~~a~~---------g~~vl~fSlE 234 (444)
T 3bgw_A 194 YKRRNFVLIAARPSMGKTAFALKQAKNMSDN---------DDVVNLHSLE 234 (444)
T ss_dssp BCSSCEEEEEECSSSSHHHHHHHHHHHHHHT---------TCEEEEECSS
T ss_pred CCCCcEEEEEeCCCCChHHHHHHHHHHHHHc---------CCEEEEEECC
Confidence 3355668999999999998888777776654 5568887643
No 215
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=83.38 E-value=1 Score=42.26 Aligned_cols=39 Identities=23% Similarity=0.342 Sum_probs=29.1
Q ss_pred cCCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCc
Q 010357 55 SGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPT 102 (512)
Q Consensus 55 ~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt 102 (512)
.|+-+++.+|+|+|||..++..+...... +.+++|+.--
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~~~~---------g~~vlyi~~E 98 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANAQAA---------GGIAAFIDAE 98 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHT---------TCCEEEEESS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhC---------CCeEEEEECC
Confidence 34668999999999998887777666543 5567877643
No 216
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=83.24 E-value=0.35 Score=43.75 Aligned_cols=59 Identities=19% Similarity=0.318 Sum_probs=31.5
Q ss_pred ccCCcccCCCCHHHHHHHHHhcCCCCCcHHHHHHHHHhh--cCCCEEEEccCCChHhHHHHHHH
Q 010357 16 ASCSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVIL--SGRHVLVNAATGTGKTVAYLAPI 77 (512)
Q Consensus 16 ~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~Q~~~~~~~~--~~~~~lv~~pTGsGKT~~~~~~~ 77 (512)
+..+|++.+-.+++.+.+.+.. ..|.. ..+++..+- -.+.+++.||+|+|||..+-..+
T Consensus 5 ~~~~~~di~g~~~~~~~l~~~i--~~~~~-~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala 65 (274)
T 2x8a_A 5 PNVTWADIGALEDIREELTMAI--LAPVR-NPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVA 65 (274)
T ss_dssp -------CCHHHHHHHHHHHHH--THHHH-SHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHHH--HHHhh-CHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHH
Confidence 4567888887788888886542 11221 123343321 22349999999999997765433
No 217
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=83.19 E-value=0.72 Score=38.53 Aligned_cols=21 Identities=14% Similarity=0.215 Sum_probs=17.0
Q ss_pred cCCCEEEEccCCChHhHHHHH
Q 010357 55 SGRHVLVNAATGTGKTVAYLA 75 (512)
Q Consensus 55 ~~~~~lv~~pTGsGKT~~~~~ 75 (512)
.|+-+++.||+|+|||...-.
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~ 24 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNT 24 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHH
Confidence 566788999999999976544
No 218
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=83.07 E-value=0.65 Score=43.02 Aligned_cols=21 Identities=29% Similarity=0.384 Sum_probs=16.6
Q ss_pred CCEEEEccCCChHhHHHHHHH
Q 010357 57 RHVLVNAATGTGKTVAYLAPI 77 (512)
Q Consensus 57 ~~~lv~~pTGsGKT~~~~~~~ 77 (512)
+.++|.||||+|||-.+...+
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA 61 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLA 61 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHH
Confidence 357899999999997765544
No 219
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=83.03 E-value=4.1 Score=35.06 Aligned_cols=96 Identities=9% Similarity=0.095 Sum_probs=56.7
Q ss_pred CCchHHH-HHHHHHhhhccccCceEEEEeecchhhhhHHHhhhhhcCCCCCCChhHHHhhhhccceeeecCCCCHHHHHH
Q 010357 299 CGSRLAV-LLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRT 377 (512)
Q Consensus 299 ~~~k~~~-l~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~l~g~~~~~~r~~ 377 (512)
...|... +...+..+.....+.+++|.++++..+..+++.+....... +..+..++|+.+..++..
T Consensus 61 GsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~-------------~~~~~~~~g~~~~~~~~~ 127 (224)
T 1qde_A 61 GTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHM-------------DIKVHACIGGTSFVEDAE 127 (224)
T ss_dssp TSSHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTTS-------------CCCEEEECC---------
T ss_pred CCcHHHHHHHHHHHHHhccCCCceEEEEECCHHHHHHHHHHHHHHhccc-------------CceEEEEeCCcchHHHHh
Confidence 4556655 44555544333456799999999999999988887653211 567788888876555443
Q ss_pred HHHhhhcCCCcEEEeeccc------ccCCCCCCCcEEEEeC
Q 010357 378 TFGAFKTEKKALLLSTDVA------ARGLDFPKVKCIIQYD 412 (512)
Q Consensus 378 ~~~~f~~~~~~vLvaT~~~------~~Gldip~~~~VI~~~ 412 (512)
.+ . ..+|+|+|.-. ...+++..+++||.-.
T Consensus 128 ~~---~--~~~iiv~Tp~~l~~~~~~~~~~~~~~~~iViDE 163 (224)
T 1qde_A 128 GL---R--DAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDE 163 (224)
T ss_dssp -C---T--TCSEEEECHHHHHHHHHTTSSCCTTCCEEEEET
T ss_pred cC---C--CCCEEEECHHHHHHHHHhCCcchhhCcEEEEcC
Confidence 32 2 26899999531 2345666778777533
No 220
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=83.02 E-value=0.85 Score=51.71 Aligned_cols=92 Identities=18% Similarity=0.161 Sum_probs=57.9
Q ss_pred CCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHHhhcCCcceEEEeCCCchH
Q 010357 56 GRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRS 135 (512)
Q Consensus 56 ~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~g~~~~ 135 (512)
|+-+.+.+|.|||||..++..+.+.... +..++|+.+-.+|.... ++.+.-...
T Consensus 1431 g~~iei~g~~~sGkttl~~~~~a~~~~~---------g~~~~~i~~e~~~~~~~---~~~~Gv~~~-------------- 1484 (1706)
T 3cmw_A 1431 GRIVEIYGPESSGKTTLTLQVIAAAQRE---------GKTCAFIDAEHALDPIY---ARKLGVDID-------------- 1484 (1706)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHHT---------TCCEEEECTTSCCCHHH---HHHTTCCGG--------------
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHhc---------CCeEEEEecCCCCCHHH---HHHcCCCHH--------------
Confidence 3668999999999999988888776655 88899998876665544 334322111
Q ss_pred HHHHHHcCCCCEEEeCChHHHHHHhhcC-CCcCCceeEEEEcchhHHHh
Q 010357 136 KEKARLRKGISILVATPGRLLDHLKHTS-SFLHTNLRWIIFDEADRILE 183 (512)
Q Consensus 136 ~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~-~~~~~~~~~lV~DEah~l~~ 183 (512)
+++++-|+.--.++.-.. ...-..+++||+|.+-.+..
T Consensus 1485 ----------~l~~~~p~~~e~~l~~~~~~~~s~~~~~vvvDsv~al~~ 1523 (1706)
T 3cmw_A 1485 ----------NLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTP 1523 (1706)
T ss_dssp ----------GCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCSTTCCC
T ss_pred ----------HeEEeCCCcHHHHHHHHHHHHHcCCCCEEEEccHHhCCc
Confidence 256666643322221100 01112578999999887543
No 221
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=82.73 E-value=0.77 Score=41.91 Aligned_cols=21 Identities=19% Similarity=0.227 Sum_probs=16.4
Q ss_pred CEEEEccCCChHhHHHHHHHH
Q 010357 58 HVLVNAATGTGKTVAYLAPII 78 (512)
Q Consensus 58 ~~lv~~pTGsGKT~~~~~~~~ 78 (512)
-+++.||||||||..+...+.
T Consensus 12 ~i~i~GptgsGKt~la~~La~ 32 (316)
T 3foz_A 12 AIFLMGPTASGKTALAIELRK 32 (316)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 367899999999977655543
No 222
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=82.72 E-value=0.68 Score=42.34 Aligned_cols=20 Identities=25% Similarity=0.207 Sum_probs=15.9
Q ss_pred CEEEEccCCChHhHHHHHHH
Q 010357 58 HVLVNAATGTGKTVAYLAPI 77 (512)
Q Consensus 58 ~~lv~~pTGsGKT~~~~~~~ 77 (512)
-++|.||||+|||..+...+
T Consensus 5 ~i~i~GptgsGKt~la~~La 24 (322)
T 3exa_A 5 LVAIVGPTAVGKTKTSVMLA 24 (322)
T ss_dssp EEEEECCTTSCHHHHHHHHH
T ss_pred EEEEECCCcCCHHHHHHHHH
Confidence 46789999999997765544
No 223
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=82.52 E-value=1.2 Score=38.25 Aligned_cols=24 Identities=25% Similarity=0.217 Sum_probs=19.4
Q ss_pred cCCCEEEEccCCChHhHHHHHHHH
Q 010357 55 SGRHVLVNAATGTGKTVAYLAPII 78 (512)
Q Consensus 55 ~~~~~lv~~pTGsGKT~~~~~~~~ 78 (512)
.|.-+++.||+|+|||..+...+.
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 456789999999999987766555
No 224
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=82.33 E-value=1.2 Score=40.77 Aligned_cols=23 Identities=26% Similarity=0.176 Sum_probs=18.1
Q ss_pred CCEEEEccCCChHhHHHHHHHHH
Q 010357 57 RHVLVNAATGTGKTVAYLAPIIN 79 (512)
Q Consensus 57 ~~~lv~~pTGsGKT~~~~~~~~~ 79 (512)
..+++.||+|+|||..+-..+..
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~ 70 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAAT 70 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHHH
Confidence 36899999999999887655443
No 225
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=82.28 E-value=0.66 Score=41.52 Aligned_cols=23 Identities=26% Similarity=0.332 Sum_probs=18.1
Q ss_pred hhcCCCEEEEccCCChHhHHHHH
Q 010357 53 ILSGRHVLVNAATGTGKTVAYLA 75 (512)
Q Consensus 53 ~~~~~~~lv~~pTGsGKT~~~~~ 75 (512)
+..|..+++.||||||||...-+
T Consensus 22 i~~g~~v~i~Gp~GsGKSTll~~ 44 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTTIAS 44 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHHHHH
T ss_pred hCCCCEEEEECCCCccHHHHHHH
Confidence 34677789999999999966543
No 226
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=82.25 E-value=12 Score=31.39 Aligned_cols=95 Identities=14% Similarity=0.078 Sum_probs=60.8
Q ss_pred CCchHHH-HHHHHHhhhc---cccCceEEEEeecchhhhhHHHhhhhhcCCCCCCChhHHHhhhhccceeeecCCCCHHH
Q 010357 299 CGSRLAV-LLSILKHLFD---TEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQED 374 (512)
Q Consensus 299 ~~~k~~~-l~~~l~~~~~---~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~l~g~~~~~~ 374 (512)
...|... +...+..+.. ...+.+++|.++++..+..+++.+..... ...+..++|+.+...
T Consensus 48 GsGKT~~~~~~~~~~l~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~---------------~~~~~~~~~~~~~~~ 112 (207)
T 2gxq_A 48 GTGKTLAFALPIAERLAPSQERGRKPRALVLTPTRELALQVASELTAVAP---------------HLKVVAVYGGTGYGK 112 (207)
T ss_dssp TSCHHHHHHHHHHHHCCCCCCTTCCCSEEEECSSHHHHHHHHHHHHHHCT---------------TSCEEEECSSSCSHH
T ss_pred CChHHHHHHHHHHHHHhhccccCCCCcEEEEECCHHHHHHHHHHHHHHhh---------------cceEEEEECCCChHH
Confidence 4556655 3333333321 13456899999999999999998887632 456778888877655
Q ss_pred HHHHHHhhhcCCCcEEEeecc-----cc-cCCCCCCCcEEEEeC
Q 010357 375 RRTTFGAFKTEKKALLLSTDV-----AA-RGLDFPKVKCIIQYD 412 (512)
Q Consensus 375 r~~~~~~f~~~~~~vLvaT~~-----~~-~Gldip~~~~VI~~~ 412 (512)
+...+. ...+|+|+|.- +. ..+++.++++||.-.
T Consensus 113 ~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDE 152 (207)
T 2gxq_A 113 QKEALL----RGADAVVATPGRALDYLRQGVLDLSRVEVAVLDE 152 (207)
T ss_dssp HHHHHH----HCCSEEEECHHHHHHHHHHTSSCCTTCSEEEEES
T ss_pred HHHHhh----CCCCEEEECHHHHHHHHHcCCcchhhceEEEEEC
Confidence 443332 24689999952 22 245677788877543
No 227
>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.24 PDB: 3k70_B*
Probab=81.98 E-value=3.2 Score=45.99 Aligned_cols=61 Identities=21% Similarity=0.166 Sum_probs=45.9
Q ss_pred CEEEEccCCChHhHHHHHHHHHHHhhcCC---CCCCCCCceEEEEcCcHHHHHHHHHHHHHHHh
Q 010357 58 HVLVNAATGTGKTVAYLAPIINHLQSYSP---RIDRSSGTFALVLVPTRELCLQVYEILHKLLH 118 (512)
Q Consensus 58 ~~lv~~pTGsGKT~~~~~~~~~~~~~~~~---~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~ 118 (512)
..+|.|.-|||||.+...-++..+..... ....-...++|+|+=|++-+.++.+.+...+.
T Consensus 18 ~~lV~AsAGSGKT~~L~~r~lrLll~~g~~~~~~~~~~~~~ILvvTFT~aAA~EMr~RI~~~L~ 81 (1180)
T 1w36_B 18 ERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSNIH 81 (1180)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHHTTCSSSSSCSSCCCGGGEEEEESCHHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCHHHHHHHHHHHHHhcCCcccccCCCCCHHHEEEEeccHHHHHHHHHHHHHHHH
Confidence 55999999999999988888888864210 00012346799999999999999988877653
No 228
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=81.87 E-value=1.6 Score=42.75 Aligned_cols=24 Identities=46% Similarity=0.562 Sum_probs=19.2
Q ss_pred CCCEEEEccCCChHhHHHHHHHHH
Q 010357 56 GRHVLVNAATGTGKTVAYLAPIIN 79 (512)
Q Consensus 56 ~~~~lv~~pTGsGKT~~~~~~~~~ 79 (512)
++++++.||+|+|||..+...+..
T Consensus 63 ~~~iLl~GppGtGKT~la~ala~~ 86 (456)
T 2c9o_A 63 GRAVLLAGPPGTGKTALALAIAQE 86 (456)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCcCCHHHHHHHHHHH
Confidence 467999999999999887655544
No 229
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=81.86 E-value=1.3 Score=41.88 Aligned_cols=39 Identities=21% Similarity=0.235 Sum_probs=28.8
Q ss_pred CCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcH
Q 010357 56 GRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTR 103 (512)
Q Consensus 56 ~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~ 103 (512)
|+-+++.+|+|+|||..++..+.+.... +..++|+..-.
T Consensus 74 G~li~I~G~pGsGKTtlal~la~~~~~~---------g~~vlyi~~E~ 112 (366)
T 1xp8_A 74 GRITEIYGPESGGKTTLALAIVAQAQKA---------GGTCAFIDAEH 112 (366)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHT---------TCCEEEEESSC
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHHHHC---------CCeEEEEECCC
Confidence 4567899999999998887777666543 45678876543
No 230
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=81.76 E-value=1.3 Score=39.51 Aligned_cols=47 Identities=17% Similarity=0.119 Sum_probs=31.7
Q ss_pred HHHHHHHHHhcCCCCCcHHHH-HHHHHhhcCC-----CEEEEccCCChHhHHHHHHH
Q 010357 27 STLCDQLRERLGFEAPTKVQA-QAIPVILSGR-----HVLVNAATGTGKTVAYLAPI 77 (512)
Q Consensus 27 ~~~~~~l~~~~~~~~~~~~Q~-~~~~~~~~~~-----~~lv~~pTGsGKT~~~~~~~ 77 (512)
.++.+.|+ ..|+. +.+- .++..+++++ .+++.||+|+|||+.+...+
T Consensus 73 n~i~~~l~-~qg~~---~~~~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala 125 (267)
T 1u0j_A 73 NRIYKILE-LNGYD---PQYAASVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIA 125 (267)
T ss_dssp CHHHHHHH-HTTCC---HHHHHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHH
T ss_pred HHHHHHHH-HcCCC---HHHHHHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHH
Confidence 47888884 44765 4443 3355555543 48899999999998876544
No 231
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=81.70 E-value=0.83 Score=41.70 Aligned_cols=23 Identities=13% Similarity=0.068 Sum_probs=17.9
Q ss_pred CCEEEEccCCChHhHHHHHHHHH
Q 010357 57 RHVLVNAATGTGKTVAYLAPIIN 79 (512)
Q Consensus 57 ~~~lv~~pTGsGKT~~~~~~~~~ 79 (512)
+.+++.||+|+|||..+-..+..
T Consensus 37 ~~lLl~GppGtGKT~la~aiA~~ 59 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQCELVFRK 59 (293)
T ss_dssp SEEEEEECTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 45788999999999877655444
No 232
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=81.67 E-value=1 Score=41.27 Aligned_cols=22 Identities=36% Similarity=0.474 Sum_probs=18.0
Q ss_pred cCCCEEEEccCCChHhHHHHHH
Q 010357 55 SGRHVLVNAATGTGKTVAYLAP 76 (512)
Q Consensus 55 ~~~~~lv~~pTGsGKT~~~~~~ 76 (512)
...++++.||+|+|||..+-..
T Consensus 24 ~~~~vLi~Ge~GtGKt~lAr~i 45 (304)
T 1ojl_A 24 SDATVLIHGDSGTGKELVARAL 45 (304)
T ss_dssp TTSCEEEESCTTSCHHHHHHHH
T ss_pred CCCcEEEECCCCchHHHHHHHH
Confidence 5678999999999999776443
No 233
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=81.67 E-value=1.5 Score=40.00 Aligned_cols=25 Identities=20% Similarity=0.271 Sum_probs=19.2
Q ss_pred CCCEEEEccCCChHhHHHHHHHHHH
Q 010357 56 GRHVLVNAATGTGKTVAYLAPIINH 80 (512)
Q Consensus 56 ~~~~lv~~pTGsGKT~~~~~~~~~~ 80 (512)
++.+.+.+|+|+|||..+...+...
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA~~l 129 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLAAIS 129 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4567889999999998876665444
No 234
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=81.59 E-value=1.1 Score=38.16 Aligned_cols=23 Identities=22% Similarity=0.166 Sum_probs=18.9
Q ss_pred cCCCEEEEccCCChHhHHHHHHH
Q 010357 55 SGRHVLVNAATGTGKTVAYLAPI 77 (512)
Q Consensus 55 ~~~~~lv~~pTGsGKT~~~~~~~ 77 (512)
.++.+++.|++|||||..+-..+
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La 46 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFA 46 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHH
Confidence 56789999999999998765554
No 235
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=81.20 E-value=2.3 Score=41.95 Aligned_cols=28 Identities=36% Similarity=0.459 Sum_probs=22.1
Q ss_pred CCCEEEEccCCChHhHHHHHHHHHHHhh
Q 010357 56 GRHVLVNAATGTGKTVAYLAPIINHLQS 83 (512)
Q Consensus 56 ~~~~lv~~pTGsGKT~~~~~~~~~~~~~ 83 (512)
+.++++.|+||||||.+.-..+...+..
T Consensus 167 ~pHlLIaG~TGSGKSt~L~~li~sLl~~ 194 (512)
T 2ius_A 167 MPHLLVAGTTGSGASVGVNAMILSMLYK 194 (512)
T ss_dssp SCSEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 4689999999999998876666655554
No 236
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=81.19 E-value=1.1 Score=37.40 Aligned_cols=23 Identities=17% Similarity=0.067 Sum_probs=18.3
Q ss_pred CCCEEEEccCCChHhHHHHHHHH
Q 010357 56 GRHVLVNAATGTGKTVAYLAPII 78 (512)
Q Consensus 56 ~~~~lv~~pTGsGKT~~~~~~~~ 78 (512)
.+.+++.|++|||||..+-..+.
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999987765543
No 237
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=81.05 E-value=0.98 Score=42.64 Aligned_cols=22 Identities=32% Similarity=0.443 Sum_probs=18.2
Q ss_pred hhcCCCEEEEccCCChHhHHHH
Q 010357 53 ILSGRHVLVNAATGTGKTVAYL 74 (512)
Q Consensus 53 ~~~~~~~lv~~pTGsGKT~~~~ 74 (512)
+..|..+++.||||||||...-
T Consensus 172 i~~G~~i~ivG~sGsGKSTll~ 193 (361)
T 2gza_A 172 VQLERVIVVAGETGSGKTTLMK 193 (361)
T ss_dssp HHTTCCEEEEESSSSCHHHHHH
T ss_pred HhcCCEEEEECCCCCCHHHHHH
Confidence 4478899999999999996543
No 238
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=80.85 E-value=1 Score=37.44 Aligned_cols=24 Identities=21% Similarity=0.220 Sum_probs=19.2
Q ss_pred hcCCCEEEEccCCChHhHHHHHHH
Q 010357 54 LSGRHVLVNAATGTGKTVAYLAPI 77 (512)
Q Consensus 54 ~~~~~~lv~~pTGsGKT~~~~~~~ 77 (512)
..++.+++.|++|||||..+-..+
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~ 32 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELA 32 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHH
Confidence 356789999999999998765544
No 239
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=80.60 E-value=1 Score=38.70 Aligned_cols=22 Identities=23% Similarity=0.359 Sum_probs=17.2
Q ss_pred cCCCEEEEccCCChHhHHHHHH
Q 010357 55 SGRHVLVNAATGTGKTVAYLAP 76 (512)
Q Consensus 55 ~~~~~lv~~pTGsGKT~~~~~~ 76 (512)
.|+-+++.||+|+|||...-..
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L 28 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAV 28 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHH
T ss_pred CCcEEEEECcCCCCHHHHHHHH
Confidence 4566889999999999765443
No 240
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=80.33 E-value=2.8 Score=41.80 Aligned_cols=59 Identities=14% Similarity=0.060 Sum_probs=53.5
Q ss_pred CceEEEEeecchhhhhHHHhhhhhcCCCCCCChhHHHhhhhccceeeecCCCCHHHHHHHHHhhhcCCCcEEEeec
Q 010357 319 SQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTD 394 (512)
Q Consensus 319 ~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~l~g~~~~~~r~~~~~~f~~~~~~vLvaT~ 394 (512)
++.+||.++++..+....+.+... +..+..++|+.+..++..+...+..|..+++++|+
T Consensus 65 ~g~~lvi~P~~aL~~q~~~~l~~~-----------------gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tp 123 (523)
T 1oyw_A 65 NGLTVVVSPLISLMKDQVDQLQAN-----------------GVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAP 123 (523)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHT-----------------TCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECH
T ss_pred CCCEEEECChHHHHHHHHHHHHHc-----------------CCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECH
Confidence 478999999999999999988876 77889999999999999999999999999999995
No 241
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=80.23 E-value=7.3 Score=33.55 Aligned_cols=77 Identities=8% Similarity=0.159 Sum_probs=49.4
Q ss_pred cCceEEEEeecchhhhhHHHhhhhhcCCCCCCChhHHHhhhhccceeeecCCCCHHHHHHHHHhhhcCCCcEEEeecc--
Q 010357 318 VSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDV-- 395 (512)
Q Consensus 318 ~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~l~g~~~~~~r~~~~~~f~~~~~~vLvaT~~-- 395 (512)
.+.+++|.++++..+..+++.+...... +..+..++|+.+...+...+ . ...+|+|+|.-
T Consensus 93 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~---~-~~~~iiv~Tp~~l 154 (228)
T 3iuy_A 93 NGPGMLVLTPTRELALHVEAECSKYSYK--------------GLKSICIYGGRNRNGQIEDI---S-KGVDIIIATPGRL 154 (228)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHCCT--------------TCCEEEECC------CHHHH---H-SCCSEEEECHHHH
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHhccc--------------CceEEEEECCCChHHHHHHh---c-CCCCEEEECHHHH
Confidence 4578999999999999999998876322 56777888876655433322 2 24789999952
Q ss_pred ---c-ccCCCCCCCcEEEEeC
Q 010357 396 ---A-ARGLDFPKVKCIIQYD 412 (512)
Q Consensus 396 ---~-~~Gldip~~~~VI~~~ 412 (512)
+ ...+++.++++||.-.
T Consensus 155 ~~~~~~~~~~~~~~~~lViDE 175 (228)
T 3iuy_A 155 NDLQMNNSVNLRSITYLVIDE 175 (228)
T ss_dssp HHHHHTTCCCCTTCCEEEECC
T ss_pred HHHHHcCCcCcccceEEEEEC
Confidence 1 2345677788777533
No 242
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=80.18 E-value=1 Score=42.52 Aligned_cols=23 Identities=35% Similarity=0.449 Sum_probs=18.5
Q ss_pred CCEEEEccCCChHhHHHHHHHHH
Q 010357 57 RHVLVNAATGTGKTVAYLAPIIN 79 (512)
Q Consensus 57 ~~~lv~~pTGsGKT~~~~~~~~~ 79 (512)
+.+++.||+|+|||..+-..+..
T Consensus 71 ~~vLl~GppGtGKT~la~~la~~ 93 (368)
T 3uk6_A 71 RAVLIAGQPGTGKTAIAMGMAQA 93 (368)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999877655444
No 243
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=79.80 E-value=11 Score=33.36 Aligned_cols=77 Identities=9% Similarity=0.168 Sum_probs=53.2
Q ss_pred cCceEEEEeecchhhhhHHHhhhhhcCCCCCCChhHHHhhhhccceeeecCCCCHHHHHHHHHhhhcCCCcEEEeecc--
Q 010357 318 VSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDV-- 395 (512)
Q Consensus 318 ~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~l~g~~~~~~r~~~~~~f~~~~~~vLvaT~~-- 395 (512)
.+.+++|.++++..+..+++.++...... +..+..+.|+......... +..+ .+|+|+|.-
T Consensus 125 ~~~~~lil~Pt~~La~q~~~~~~~~~~~~-------------~~~~~~~~g~~~~~~~~~~---~~~~-~~Iiv~Tp~~l 187 (262)
T 3ly5_A 125 NGTGVLILSPTRELAMQTFGVLKELMTHH-------------VHTYGLIMGGSNRSAEAQK---LGNG-INIIVATPGRL 187 (262)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTTC-------------CSCEEEECSSSCHHHHHHH---HHHC-CSEEEECHHHH
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHHhhc-------------CceEEEEECCCCHHHHHHH---hcCC-CCEEEEcHHHH
Confidence 46789999999999999999888763221 4567777888766554433 3334 789999941
Q ss_pred ---c--ccCCCCCCCcEEEEe
Q 010357 396 ---A--ARGLDFPKVKCIIQY 411 (512)
Q Consensus 396 ---~--~~Gldip~~~~VI~~ 411 (512)
+ ..++++.++++||.-
T Consensus 188 ~~~~~~~~~~~~~~l~~lViD 208 (262)
T 3ly5_A 188 LDHMQNTPGFMYKNLQCLVID 208 (262)
T ss_dssp HHHHHHCTTCCCTTCCEEEEC
T ss_pred HHHHHccCCcccccCCEEEEc
Confidence 2 124677778877753
No 244
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=79.70 E-value=1.2 Score=39.69 Aligned_cols=60 Identities=20% Similarity=0.233 Sum_probs=34.1
Q ss_pred CccCCcccCCCCHHHHHHHHHhcCC-CCCcHHHHHHHHHhhcCCCEEEEccCCChHhHHHHHHH
Q 010357 15 FASCSFSSLGLHSTLCDQLRERLGF-EAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPI 77 (512)
Q Consensus 15 ~~~~~~~~~~l~~~~~~~l~~~~~~-~~~~~~Q~~~~~~~~~~~~~lv~~pTGsGKT~~~~~~~ 77 (512)
....+|+++.-.++..+.+.+...+ ..+..++.-. ....+.+++.||+|+|||..+-..+
T Consensus 6 ~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~---~~~~~~vll~G~~GtGKT~la~~la 66 (257)
T 1lv7_A 6 QIKTTFADVAGCDEAKEEVAELVEYLREPSRFQKLG---GKIPKGVLMVGPPGTGKTLLAKAIA 66 (257)
T ss_dssp SSCCCGGGSCSCHHHHHHTHHHHHHHHCGGGC--------CCCCEEEEECCTTSCHHHHHHHHH
T ss_pred CCCCCHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcC---CCCCCeEEEECcCCCCHHHHHHHHH
Confidence 3456888887777777776442110 1111111100 1123568999999999997765544
No 245
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=79.54 E-value=1.2 Score=37.82 Aligned_cols=23 Identities=17% Similarity=0.245 Sum_probs=18.1
Q ss_pred hcCCCEEEEccCCChHhHHHHHH
Q 010357 54 LSGRHVLVNAATGTGKTVAYLAP 76 (512)
Q Consensus 54 ~~~~~~lv~~pTGsGKT~~~~~~ 76 (512)
..|+-+++.||+|+|||...-..
T Consensus 17 ~~g~~ivl~GPSGaGKsTL~~~L 39 (197)
T 3ney_A 17 QGRKTLVLIGASGVGRSHIKNAL 39 (197)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHH
T ss_pred CCCCEEEEECcCCCCHHHHHHHH
Confidence 36777899999999999765443
No 246
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=79.54 E-value=1.2 Score=39.53 Aligned_cols=21 Identities=24% Similarity=0.135 Sum_probs=16.2
Q ss_pred CEEEEccCCChHhHHHHHHHH
Q 010357 58 HVLVNAATGTGKTVAYLAPII 78 (512)
Q Consensus 58 ~~lv~~pTGsGKT~~~~~~~~ 78 (512)
-+++.||||||||..+...+.
T Consensus 3 li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 368899999999977655443
No 247
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=79.53 E-value=2.9 Score=42.37 Aligned_cols=59 Identities=12% Similarity=0.125 Sum_probs=52.7
Q ss_pred CceEEEEeecchhhhhHHHhhhhhcCCCCCCChhHHHhhhhccceeeecCCCCHHHHHHHHHhh--hcCCCcEEEeec
Q 010357 319 SQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAF--KTEKKALLLSTD 394 (512)
Q Consensus 319 ~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~l~g~~~~~~r~~~~~~f--~~~~~~vLvaT~ 394 (512)
.+.+||.+|++..+....+.+... +..+..++|+++..++..+.+.+ ..+..+|+++|+
T Consensus 84 ~g~~lVisP~~~L~~q~~~~l~~~-----------------gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tp 144 (591)
T 2v1x_A 84 DGFTLVICPLISLMEDQLMVLKQL-----------------GISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTP 144 (591)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHH-----------------TCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECH
T ss_pred CCcEEEEeCHHHHHHHHHHHHHhc-----------------CCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEECh
Confidence 479999999999999999998887 77899999999999999888888 567889999997
No 248
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=79.52 E-value=1.3 Score=41.52 Aligned_cols=24 Identities=29% Similarity=0.526 Sum_probs=18.0
Q ss_pred HHHhhcCCC--EEEEccCCChHhHHH
Q 010357 50 IPVILSGRH--VLVNAATGTGKTVAY 73 (512)
Q Consensus 50 ~~~~~~~~~--~lv~~pTGsGKT~~~ 73 (512)
+..+++|-| ++.-|+||||||++.
T Consensus 97 v~~~l~G~N~tifAYGQTGSGKTyTM 122 (359)
T 3nwn_A 97 VSQALDGYNGTIMCYGQTGAGKTYTM 122 (359)
T ss_dssp HHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHhCCCCEEEEEeCCCCCCccEEe
Confidence 344557766 467999999999875
No 249
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=79.47 E-value=1.2 Score=37.89 Aligned_cols=22 Identities=23% Similarity=0.382 Sum_probs=16.4
Q ss_pred cCCCEEEEccCCChHhHHHHHH
Q 010357 55 SGRHVLVNAATGTGKTVAYLAP 76 (512)
Q Consensus 55 ~~~~~lv~~pTGsGKT~~~~~~ 76 (512)
.|+.+.+.||+|+|||...-+.
T Consensus 3 ~g~~i~lvGpsGaGKSTLl~~L 24 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLLKKL 24 (198)
T ss_dssp --CCEEEECCTTSSHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHH
Confidence 4677899999999999665443
No 250
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=79.16 E-value=2.9 Score=41.67 Aligned_cols=29 Identities=34% Similarity=0.486 Sum_probs=23.5
Q ss_pred CCEEEEccCCChHhHHHHHHHHHHHhhcC
Q 010357 57 RHVLVNAATGTGKTVAYLAPIINHLQSYS 85 (512)
Q Consensus 57 ~~~lv~~pTGsGKT~~~~~~~~~~~~~~~ 85 (512)
-+++|.|.||||||.+.-..+...+....
T Consensus 215 pHlLIaG~TGSGKS~~L~tlI~sLl~~~s 243 (574)
T 2iut_A 215 PHLLVAGTTGSGKSVGVNAMLLSILFKST 243 (574)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHHTTCC
T ss_pred CeeEEECCCCCCHHHHHHHHHHHHHHhCC
Confidence 57999999999999988777777665533
No 251
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=78.89 E-value=1.4 Score=37.53 Aligned_cols=24 Identities=17% Similarity=0.158 Sum_probs=19.1
Q ss_pred hhcCCCEEEEccCCChHhHHHHHH
Q 010357 53 ILSGRHVLVNAATGTGKTVAYLAP 76 (512)
Q Consensus 53 ~~~~~~~lv~~pTGsGKT~~~~~~ 76 (512)
+..++-++++||+|||||..+-..
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L 32 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKV 32 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHH
T ss_pred cccCCEEEEECCCCCCHHHHHHHH
Confidence 456778999999999999765443
No 252
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=78.50 E-value=5 Score=36.55 Aligned_cols=95 Identities=12% Similarity=0.080 Sum_probs=59.7
Q ss_pred CCchHHH-HHHHHHhhhccccCceEEEEeecchhhhhHHHhhhhhcCCCCCCChhHHHhhhhccceeeecCCCCHHHHHH
Q 010357 299 CGSRLAV-LLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRT 377 (512)
Q Consensus 299 ~~~k~~~-l~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~l~g~~~~~~r~~ 377 (512)
...|..+ ++.++..+.....+.++||.++++..+..+++.+...... .++..+....|+.....+.
T Consensus 141 GsGKT~a~~lp~l~~l~~~~~~~~~lil~PtreLa~Q~~~~~~~l~~~------------~~~~~~~~~~~~~~~~~~~- 207 (300)
T 3fmo_B 141 GTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKF------------YPELKLAYAVRGNKLERGQ- 207 (300)
T ss_dssp TSSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTT------------STTCCEEEESTTCCCCTTC-
T ss_pred CCCccHHHHHHHHHhhhccCCCceEEEEcCcHHHHHHHHHHHHHHHhh------------CCCcEEEEEeCCccHhhhh-
Confidence 3456544 4455555543444458999999999999998888776321 1255666667665432211
Q ss_pred HHHhhhcCCCcEEEeeccc------c-cCCCCCCCcEEEEeC
Q 010357 378 TFGAFKTEKKALLLSTDVA------A-RGLDFPKVKCIIQYD 412 (512)
Q Consensus 378 ~~~~f~~~~~~vLvaT~~~------~-~Gldip~~~~VI~~~ 412 (512)
....+|+|+|.-- . ..+++..+.++|.-.
T Consensus 208 ------~~~~~IlV~TP~~l~~~l~~~~~~~l~~l~~lVlDE 243 (300)
T 3fmo_B 208 ------KISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDE 243 (300)
T ss_dssp ------CCCCSEEEECHHHHHHHHTTTCCCCGGGCSEEEETT
T ss_pred ------cCCCCEEEECHHHHHHHHHhcCCCChhhceEEEEeC
Confidence 3456899999632 1 246777888887543
No 253
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=78.35 E-value=1.3 Score=40.80 Aligned_cols=21 Identities=24% Similarity=0.202 Sum_probs=16.7
Q ss_pred CEEEEccCCChHhHHHHHHHH
Q 010357 58 HVLVNAATGTGKTVAYLAPII 78 (512)
Q Consensus 58 ~~lv~~pTGsGKT~~~~~~~~ 78 (512)
.+++.||||||||..+...+.
T Consensus 7 ~i~i~GptGsGKTtla~~La~ 27 (323)
T 3crm_A 7 AIFLMGPTAAGKTDLAMALAD 27 (323)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999977655443
No 254
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=78.14 E-value=1.7 Score=36.45 Aligned_cols=18 Identities=28% Similarity=0.591 Sum_probs=15.0
Q ss_pred CCEEEEccCCChHhHHHH
Q 010357 57 RHVLVNAATGTGKTVAYL 74 (512)
Q Consensus 57 ~~~lv~~pTGsGKT~~~~ 74 (512)
+.++++||+|+|||...-
T Consensus 2 RpIVi~GPSG~GK~Tl~~ 19 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLK 19 (186)
T ss_dssp CCEEEECCTTSSHHHHHH
T ss_pred CEEEEECCCCCCHHHHHH
Confidence 568999999999996643
No 255
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=78.05 E-value=1.5 Score=41.59 Aligned_cols=22 Identities=27% Similarity=0.372 Sum_probs=18.0
Q ss_pred CCCEEEEccCCChHhHHHHHHH
Q 010357 56 GRHVLVNAATGTGKTVAYLAPI 77 (512)
Q Consensus 56 ~~~~lv~~pTGsGKT~~~~~~~ 77 (512)
..++++.||+|+|||..+-..+
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la 93 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLA 93 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHHHHH
Confidence 4589999999999998765544
No 256
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=78.05 E-value=1.6 Score=40.22 Aligned_cols=23 Identities=26% Similarity=0.421 Sum_probs=17.5
Q ss_pred HHhhcCCC--EEEEccCCChHhHHH
Q 010357 51 PVILSGRH--VLVNAATGTGKTVAY 73 (512)
Q Consensus 51 ~~~~~~~~--~lv~~pTGsGKT~~~ 73 (512)
..+++|-| ++.-|+||||||++.
T Consensus 71 ~~~l~G~n~tifAYGqTGSGKTyTm 95 (325)
T 1bg2_A 71 KDVLEGYNGTIFAYGQTSSGKTHTM 95 (325)
T ss_dssp HHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHhCCCeEEEEEECCCCCCCceEe
Confidence 33557766 467999999999875
No 257
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=77.99 E-value=1.3 Score=37.65 Aligned_cols=22 Identities=18% Similarity=0.314 Sum_probs=17.5
Q ss_pred hcCCCEEEEccCCChHhHHHHH
Q 010357 54 LSGRHVLVNAATGTGKTVAYLA 75 (512)
Q Consensus 54 ~~~~~~lv~~pTGsGKT~~~~~ 75 (512)
..|.-+.+.||+|||||..+-+
T Consensus 4 ~~g~~i~l~G~~GsGKSTl~~~ 25 (207)
T 2j41_A 4 EKGLLIVLSGPSGVGKGTVRKR 25 (207)
T ss_dssp CCCCEEEEECSTTSCHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHH
Confidence 3567788999999999976544
No 258
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=77.98 E-value=1.4 Score=36.50 Aligned_cols=21 Identities=19% Similarity=0.309 Sum_probs=16.6
Q ss_pred CCCEEEEccCCChHhHHHHHH
Q 010357 56 GRHVLVNAATGTGKTVAYLAP 76 (512)
Q Consensus 56 ~~~~lv~~pTGsGKT~~~~~~ 76 (512)
+..+++.|++|||||.++-..
T Consensus 3 ~~~i~l~G~~GsGKST~a~~L 23 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCL 23 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHH
Confidence 456889999999999776543
No 259
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=77.70 E-value=1.6 Score=36.47 Aligned_cols=23 Identities=30% Similarity=0.407 Sum_probs=18.2
Q ss_pred cCCCEEEEccCCChHhHHHHHHH
Q 010357 55 SGRHVLVNAATGTGKTVAYLAPI 77 (512)
Q Consensus 55 ~~~~~lv~~pTGsGKT~~~~~~~ 77 (512)
.+..+++.|++|||||.++-..+
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La 31 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIA 31 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHH
Confidence 45679999999999998765443
No 260
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=77.63 E-value=2.4 Score=38.63 Aligned_cols=28 Identities=18% Similarity=0.341 Sum_probs=21.2
Q ss_pred hhcCCCEEEEccCCChHhHHHHHHHHHH
Q 010357 53 ILSGRHVLVNAATGTGKTVAYLAPIINH 80 (512)
Q Consensus 53 ~~~~~~~lv~~pTGsGKT~~~~~~~~~~ 80 (512)
+..|.-+++.||+|+|||..+...+...
T Consensus 32 l~~G~~~~i~G~~G~GKTTl~~~ia~~~ 59 (296)
T 1cr0_A 32 ARGGEVIMVTSGSGMGKSTFVRQQALQW 59 (296)
T ss_dssp BCTTCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence 3467778999999999997766555444
No 261
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=77.38 E-value=2.3 Score=38.97 Aligned_cols=23 Identities=26% Similarity=0.232 Sum_probs=17.4
Q ss_pred CEEEEccCCChHhHHHHHHHHHH
Q 010357 58 HVLVNAATGTGKTVAYLAPIINH 80 (512)
Q Consensus 58 ~~lv~~pTGsGKT~~~~~~~~~~ 80 (512)
-+.+.+|+|+|||..+...+...
T Consensus 106 vi~ivG~~GsGKTTl~~~LA~~l 128 (306)
T 1vma_A 106 VIMVVGVNGTGKTTSCGKLAKMF 128 (306)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEEcCCCChHHHHHHHHHHHH
Confidence 46789999999998766655443
No 262
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=77.16 E-value=1.6 Score=40.65 Aligned_cols=21 Identities=38% Similarity=0.594 Sum_probs=16.4
Q ss_pred hhcCCC--EEEEccCCChHhHHH
Q 010357 53 ILSGRH--VLVNAATGTGKTVAY 73 (512)
Q Consensus 53 ~~~~~~--~lv~~pTGsGKT~~~ 73 (512)
+++|-| ++.-|+||||||++.
T Consensus 90 ~l~G~N~tifAYGQTGSGKTyTM 112 (344)
T 3dc4_A 90 LLEGFQCTALAYGQTGTGKSYSM 112 (344)
T ss_dssp HHHTCCEEEEEESSTTSSHHHHH
T ss_pred hhCCCceEEEEecCCCCCCCeEE
Confidence 456766 467899999999875
No 263
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=77.01 E-value=1.5 Score=40.67 Aligned_cols=21 Identities=19% Similarity=0.233 Sum_probs=16.5
Q ss_pred CEEEEccCCChHhHHHHHHHH
Q 010357 58 HVLVNAATGTGKTVAYLAPII 78 (512)
Q Consensus 58 ~~lv~~pTGsGKT~~~~~~~~ 78 (512)
-++|.||||||||..+...+.
T Consensus 9 lI~I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 9 LIVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCcCcHHHHHHHHHH
Confidence 478999999999977655443
No 264
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=76.90 E-value=1.5 Score=41.67 Aligned_cols=22 Identities=18% Similarity=0.320 Sum_probs=16.8
Q ss_pred CEEEEccCCChHhHHHHHHHHH
Q 010357 58 HVLVNAATGTGKTVAYLAPIIN 79 (512)
Q Consensus 58 ~~lv~~pTGsGKT~~~~~~~~~ 79 (512)
-++|.||||+|||..+...+..
T Consensus 4 ~i~i~GptgsGKttla~~La~~ 25 (409)
T 3eph_A 4 VIVIAGTTGVGKSQLSIQLAQK 25 (409)
T ss_dssp EEEEEECSSSSHHHHHHHHHHH
T ss_pred EEEEECcchhhHHHHHHHHHHH
Confidence 3678999999999776655433
No 265
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=76.82 E-value=1.9 Score=40.42 Aligned_cols=22 Identities=36% Similarity=0.557 Sum_probs=17.0
Q ss_pred HhhcCCC--EEEEccCCChHhHHH
Q 010357 52 VILSGRH--VLVNAATGTGKTVAY 73 (512)
Q Consensus 52 ~~~~~~~--~lv~~pTGsGKT~~~ 73 (512)
.+++|-| ++..|+||||||++.
T Consensus 75 ~~l~G~n~tifAYGqTGSGKTyTm 98 (355)
T 1goj_A 75 DILNGYNGTVFAYGQTGAGKSYTM 98 (355)
T ss_dssp HHTTTCCEEEEEECSTTSSHHHHH
T ss_pred HHhCCCcceEEEECCCCCCcceEe
Confidence 3557766 467999999999775
No 266
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=76.74 E-value=1.2 Score=42.26 Aligned_cols=23 Identities=26% Similarity=0.329 Sum_probs=17.9
Q ss_pred hcCCCEEEEccCCChHhHHHHHH
Q 010357 54 LSGRHVLVNAATGTGKTVAYLAP 76 (512)
Q Consensus 54 ~~~~~~lv~~pTGsGKT~~~~~~ 76 (512)
..|..+++.||||||||...-..
T Consensus 134 ~~g~~i~ivG~~GsGKTTll~~l 156 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTTIASM 156 (372)
T ss_dssp SSSEEEEEECSSSSSHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHH
Confidence 45667899999999999665443
No 267
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=76.53 E-value=1.9 Score=40.22 Aligned_cols=32 Identities=25% Similarity=0.374 Sum_probs=22.2
Q ss_pred CcHHHHHHHH--------HhhcCCC--EEEEccCCChHhHHH
Q 010357 42 PTKVQAQAIP--------VILSGRH--VLVNAATGTGKTVAY 73 (512)
Q Consensus 42 ~~~~Q~~~~~--------~~~~~~~--~lv~~pTGsGKT~~~ 73 (512)
+..-|.+++. .+++|-| ++.-|+||||||++.
T Consensus 66 ~~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm 107 (350)
T 2vvg_A 66 QTSCNYGIFQASFKPLIDAVLEGFNSTIFAYGQTGAGKTWTM 107 (350)
T ss_dssp TTCCHHHHHHHTTHHHHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred CCcchhHHHHHHHHHHHHHHhCCCceeEEeecCCCCCCCEEe
Confidence 4445666554 3456766 467999999999875
No 268
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=76.51 E-value=1.7 Score=35.67 Aligned_cols=21 Identities=19% Similarity=0.298 Sum_probs=16.8
Q ss_pred CCCEEEEccCCChHhHHHHHH
Q 010357 56 GRHVLVNAATGTGKTVAYLAP 76 (512)
Q Consensus 56 ~~~~lv~~pTGsGKT~~~~~~ 76 (512)
+..+++.||.|||||..+-..
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~L 24 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQL 24 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHH
Confidence 457899999999999765443
No 269
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=76.47 E-value=14 Score=32.10 Aligned_cols=98 Identities=10% Similarity=0.091 Sum_probs=62.4
Q ss_pred cCCchHHH-HHHHHHhhhc-----cccCceEEEEeecchhhhhHHHhhhhhcCCCCCCChhHHHhhhhccceeeecCCCC
Q 010357 298 PCGSRLAV-LLSILKHLFD-----TEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMK 371 (512)
Q Consensus 298 ~~~~k~~~-l~~~l~~~~~-----~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~l~g~~~ 371 (512)
....|... +...+..+.. ...+.+++|.++++..+..+.+.++.... ..+..+..++|+.+
T Consensus 75 TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~-------------~~~~~~~~~~g~~~ 141 (242)
T 3fe2_A 75 TGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCR-------------ACRLKSTCIYGGAP 141 (242)
T ss_dssp TTSCHHHHHHHHHHHHHHTSCCCCTTCCCSEEEECSSHHHHHHHHHHHHHHHH-------------HTTCCEEEECTTSC
T ss_pred CcCHHHHHHHHHHHHHHHhccccccCCCCEEEEEeCcHHHHHHHHHHHHHHHh-------------hcCceEEEEECCCC
Confidence 44566544 3333433321 12356899999999999998888876521 11567888899988
Q ss_pred HHHHHHHHHhhhcCCCcEEEeecc-----cc-cCCCCCCCcEEEEeC
Q 010357 372 QEDRRTTFGAFKTEKKALLLSTDV-----AA-RGLDFPKVKCIIQYD 412 (512)
Q Consensus 372 ~~~r~~~~~~f~~~~~~vLvaT~~-----~~-~Gldip~~~~VI~~~ 412 (512)
...+...++ + ..+|+|+|.- +. ..+++.+++++|.-.
T Consensus 142 ~~~~~~~~~---~-~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lViDE 184 (242)
T 3fe2_A 142 KGPQIRDLE---R-GVEICIATPGRLIDFLECGKTNLRRTTYLVLDE 184 (242)
T ss_dssp HHHHHHHHH---H-CCSEEEECHHHHHHHHHHTSCCCTTCCEEEETT
T ss_pred hHHHHHHhc---C-CCCEEEECHHHHHHHHHcCCCCcccccEEEEeC
Confidence 776654443 2 3689999952 22 235677788777533
No 270
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=76.47 E-value=1.2 Score=36.72 Aligned_cols=19 Identities=21% Similarity=0.282 Sum_probs=15.3
Q ss_pred CEEEEccCCChHhHHHHHH
Q 010357 58 HVLVNAATGTGKTVAYLAP 76 (512)
Q Consensus 58 ~~lv~~pTGsGKT~~~~~~ 76 (512)
.+++.||+|||||..+-..
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4678999999999876544
No 271
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=76.34 E-value=1.1 Score=37.51 Aligned_cols=22 Identities=32% Similarity=0.507 Sum_probs=17.3
Q ss_pred hcCCCEEEEccCCChHhHHHHH
Q 010357 54 LSGRHVLVNAATGTGKTVAYLA 75 (512)
Q Consensus 54 ~~~~~~lv~~pTGsGKT~~~~~ 75 (512)
..|..+++.||+|||||..+-.
T Consensus 7 ~~g~~i~l~G~~GsGKSTl~~~ 28 (191)
T 1zp6_A 7 LGGNILLLSGHPGSGKSTIAEA 28 (191)
T ss_dssp CTTEEEEEEECTTSCHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHH
Confidence 3566789999999999976543
No 272
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=76.28 E-value=1.3 Score=41.53 Aligned_cols=21 Identities=38% Similarity=0.514 Sum_probs=16.3
Q ss_pred cCCCEEEEccCCChHhHHHHH
Q 010357 55 SGRHVLVNAATGTGKTVAYLA 75 (512)
Q Consensus 55 ~~~~~lv~~pTGsGKT~~~~~ 75 (512)
.+..+++.||||||||...-.
T Consensus 122 ~~g~i~I~GptGSGKTTlL~~ 142 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTTLAA 142 (356)
T ss_dssp SSEEEEEECSTTSCHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHH
Confidence 455789999999999966433
No 273
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=76.26 E-value=1.8 Score=40.33 Aligned_cols=23 Identities=22% Similarity=0.388 Sum_probs=17.3
Q ss_pred HHhhcCCC--EEEEccCCChHhHHH
Q 010357 51 PVILSGRH--VLVNAATGTGKTVAY 73 (512)
Q Consensus 51 ~~~~~~~~--~lv~~pTGsGKT~~~ 73 (512)
..+++|-| ++.-|+||||||++.
T Consensus 71 ~~~l~G~n~tifAYGqTGSGKTyTM 95 (349)
T 1t5c_A 71 DSAIQGYNGTIFAYGQTASGKTYTM 95 (349)
T ss_dssp HHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHcCCccceeeecCCCCCCCeEE
Confidence 33456766 467999999999875
No 274
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=76.25 E-value=1.9 Score=40.42 Aligned_cols=32 Identities=25% Similarity=0.417 Sum_probs=21.9
Q ss_pred CcHHHHHHHH--------HhhcCCC--EEEEccCCChHhHHH
Q 010357 42 PTKVQAQAIP--------VILSGRH--VLVNAATGTGKTVAY 73 (512)
Q Consensus 42 ~~~~Q~~~~~--------~~~~~~~--~lv~~pTGsGKT~~~ 73 (512)
+..-|.+++. .+++|-| ++.-|+||||||++.
T Consensus 61 ~~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm 102 (365)
T 2y65_A 61 PNASQEKVYNEAAKSIVTDVLAGYNGTIFAYGQTSSGKTHTM 102 (365)
T ss_dssp TTCCHHHHHHHHTHHHHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred CCCCHHHHHHHhhhhHHHHHhCCCceEEEeecCCCCCCceEE
Confidence 3445655543 3456766 467999999999875
No 275
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=76.23 E-value=1.9 Score=40.27 Aligned_cols=26 Identities=35% Similarity=0.514 Sum_probs=19.7
Q ss_pred HHHHhhcCCCE--EEEccCCChHhHHHH
Q 010357 49 AIPVILSGRHV--LVNAATGTGKTVAYL 74 (512)
Q Consensus 49 ~~~~~~~~~~~--lv~~pTGsGKT~~~~ 74 (512)
.+..+++|-|+ +.-|+||||||++..
T Consensus 77 lv~~~l~G~n~tifAYGqTGSGKTyTm~ 104 (349)
T 3t0q_A 77 LVQSSLDGYNVCIFAYGQTGSGKTYTML 104 (349)
T ss_dssp HHHGGGTTCEEEEEEECSTTSSHHHHHH
T ss_pred HHHHHHCCcceeEEEeCCCCCCCceEeC
Confidence 45556678764 678999999998863
No 276
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=76.21 E-value=1.8 Score=40.66 Aligned_cols=22 Identities=36% Similarity=0.579 Sum_probs=16.9
Q ss_pred HhhcCCC--EEEEccCCChHhHHH
Q 010357 52 VILSGRH--VLVNAATGTGKTVAY 73 (512)
Q Consensus 52 ~~~~~~~--~lv~~pTGsGKT~~~ 73 (512)
.+++|-| ++.-|+||||||++.
T Consensus 96 ~~l~G~n~tifAYGqTGSGKTyTM 119 (372)
T 3b6u_A 96 SVLQGFNGTIFAYGQTGTGKTYTM 119 (372)
T ss_dssp HHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHhCCCeeeEEeecCCCCCCCEeE
Confidence 3557766 467899999999875
No 277
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=76.21 E-value=2 Score=39.77 Aligned_cols=25 Identities=24% Similarity=0.444 Sum_probs=19.0
Q ss_pred HHHHhhcCCC--EEEEccCCChHhHHH
Q 010357 49 AIPVILSGRH--VLVNAATGTGKTVAY 73 (512)
Q Consensus 49 ~~~~~~~~~~--~lv~~pTGsGKT~~~ 73 (512)
.+..+++|-| ++..|+||||||++.
T Consensus 72 lv~~~l~G~n~tifAYGqTGSGKTyTm 98 (330)
T 2h58_A 72 LVTSCIDGFNVCIFAYGQTGAGKTYTM 98 (330)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHhCCCEEEEEeECCCCCCCcEEE
Confidence 4455667776 467999999999775
No 278
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=76.08 E-value=1.6 Score=37.02 Aligned_cols=21 Identities=29% Similarity=0.422 Sum_probs=16.9
Q ss_pred cCCCEEEEccCCChHhHHHHH
Q 010357 55 SGRHVLVNAATGTGKTVAYLA 75 (512)
Q Consensus 55 ~~~~~lv~~pTGsGKT~~~~~ 75 (512)
.|.-+.+.||+|||||..+-+
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~~~ 26 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLVRA 26 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHH
T ss_pred CCcEEEEECcCCCCHHHHHHH
Confidence 566788999999999976544
No 279
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=76.06 E-value=2 Score=40.06 Aligned_cols=22 Identities=32% Similarity=0.523 Sum_probs=16.9
Q ss_pred HhhcCCC--EEEEccCCChHhHHH
Q 010357 52 VILSGRH--VLVNAATGTGKTVAY 73 (512)
Q Consensus 52 ~~~~~~~--~lv~~pTGsGKT~~~ 73 (512)
.+++|-| ++.-|+||||||++.
T Consensus 78 ~~l~G~n~tifAYGqTGSGKTyTm 101 (344)
T 4a14_A 78 AFFEGFNATVFAYGQTGSGKTYTM 101 (344)
T ss_dssp HHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHhhcCeeEEEecccCCCceEee
Confidence 3456766 467899999999875
No 280
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=75.99 E-value=2 Score=40.21 Aligned_cols=32 Identities=38% Similarity=0.506 Sum_probs=22.0
Q ss_pred CcHHHHHHHH--------HhhcCCC--EEEEccCCChHhHHH
Q 010357 42 PTKVQAQAIP--------VILSGRH--VLVNAATGTGKTVAY 73 (512)
Q Consensus 42 ~~~~Q~~~~~--------~~~~~~~--~lv~~pTGsGKT~~~ 73 (512)
+..-|.+++. .+++|-| ++.-|+||||||++.
T Consensus 82 ~~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm 123 (355)
T 3lre_A 82 ETSTQSEVFEHTTKPILRSFLNGYNCTVLAYGATGAGKTHTM 123 (355)
T ss_dssp TTCCHHHHHHTTHHHHHHHHTTTCCEEEEEECCTTSSHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHhCCCceEEEEeCCCCCCceeee
Confidence 3444666553 3456766 467899999999875
No 281
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=75.98 E-value=1.2 Score=41.48 Aligned_cols=21 Identities=43% Similarity=0.640 Sum_probs=17.5
Q ss_pred hhcCCCEEEEccCCChHhHHH
Q 010357 53 ILSGRHVLVNAATGTGKTVAY 73 (512)
Q Consensus 53 ~~~~~~~lv~~pTGsGKT~~~ 73 (512)
+..|+.+.+.||||||||...
T Consensus 168 i~~g~~v~i~G~~GsGKTTll 188 (330)
T 2pt7_A 168 IAIGKNVIVCGGTGSGKTTYI 188 (330)
T ss_dssp HHHTCCEEEEESTTSCHHHHH
T ss_pred ccCCCEEEEECCCCCCHHHHH
Confidence 347889999999999999643
No 282
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=75.95 E-value=1.9 Score=35.98 Aligned_cols=22 Identities=23% Similarity=0.394 Sum_probs=17.4
Q ss_pred CCCEEEEccCCChHhHHHHHHH
Q 010357 56 GRHVLVNAATGTGKTVAYLAPI 77 (512)
Q Consensus 56 ~~~~lv~~pTGsGKT~~~~~~~ 77 (512)
+..+++.|++|||||..+-..+
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~ 24 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAM 24 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 4568899999999997765544
No 283
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=75.93 E-value=1.8 Score=41.23 Aligned_cols=23 Identities=30% Similarity=0.501 Sum_probs=17.3
Q ss_pred HHhhcCCC--EEEEccCCChHhHHH
Q 010357 51 PVILSGRH--VLVNAATGTGKTVAY 73 (512)
Q Consensus 51 ~~~~~~~~--~lv~~pTGsGKT~~~ 73 (512)
..+++|-| ++.-|+||||||++.
T Consensus 148 ~~~l~G~N~tifAYGQTGSGKTyTM 172 (410)
T 1v8k_A 148 QTIFEGGKATCFAYGQTGSGKTHTM 172 (410)
T ss_dssp HHHHTTCEEEEEEEESTTSSHHHHH
T ss_pred HHHhcCCceeEEeecCCCCCCCeEe
Confidence 34556765 467899999999875
No 284
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=75.91 E-value=1.8 Score=40.50 Aligned_cols=45 Identities=11% Similarity=-0.064 Sum_probs=28.5
Q ss_pred CCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcH
Q 010357 56 GRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTR 103 (512)
Q Consensus 56 ~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~ 103 (512)
|.-+++.||+|+|||..++..+...... ....+.+.+++|+....
T Consensus 122 G~i~~I~G~~GsGKTtla~~la~~~~~~---~~~gg~~~~vlyi~~E~ 166 (343)
T 1v5w_A 122 MAITEAFGEFRTGKTQLSHTLCVTAQLP---GAGGYPGGKIIFIDTEN 166 (343)
T ss_dssp SEEEEEECCTTCTHHHHHHHHHHHTTSC---BTTTBCCCEEEEEESSS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhcc---cccCCCCCeEEEEECCC
Confidence 3457899999999998877666653321 00011356788886543
No 285
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=75.73 E-value=3.6 Score=40.94 Aligned_cols=63 Identities=14% Similarity=0.092 Sum_probs=34.5
Q ss_pred CccCCcccCCCCHHHHHHHHHhcCCCCCcHHHHHHHHHh-----hcCCCEEEEccCCChHhHHHHHHHHH
Q 010357 15 FASCSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVI-----LSGRHVLVNAATGTGKTVAYLAPIIN 79 (512)
Q Consensus 15 ~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~Q~~~~~~~-----~~~~~~lv~~pTGsGKT~~~~~~~~~ 79 (512)
+...+|+++.-.+...+.+.+.+ ..........+... -..+.+++.||+|+|||.++...+.+
T Consensus 33 yrP~~~~dliG~~~~~~~L~~~l--~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~ 100 (516)
T 1sxj_A 33 YAPTNLQQVCGNKGSVMKLKNWL--ANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQE 100 (516)
T ss_dssp TCCSSGGGCCSCHHHHHHHHHHH--HTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHH
T ss_pred cCCCCHHHhcCCHHHHHHHHHHH--HHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 55567888776777766664431 10000000000000 01257899999999999877655443
No 286
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=75.71 E-value=1.9 Score=41.15 Aligned_cols=25 Identities=32% Similarity=0.497 Sum_probs=19.2
Q ss_pred HHHHhhcCCCE--EEEccCCChHhHHH
Q 010357 49 AIPVILSGRHV--LVNAATGTGKTVAY 73 (512)
Q Consensus 49 ~~~~~~~~~~~--lv~~pTGsGKT~~~ 73 (512)
.+..+++|-|+ +..|+||||||++.
T Consensus 132 lv~~~l~G~N~tifAYGqTGSGKTyTM 158 (403)
T 4etp_A 132 LVQSSLDGYNVAIFAYGQTGSGKTFTM 158 (403)
T ss_dssp HHHHHHTTCCEEEEEESCTTSSHHHHH
T ss_pred HHHHHhCCcceEEEEECCCCCCCceEe
Confidence 44556678764 67899999999886
No 287
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=75.70 E-value=1.8 Score=36.72 Aligned_cols=22 Identities=27% Similarity=0.519 Sum_probs=16.9
Q ss_pred CEEEEccCCChHhHHHHHHHHH
Q 010357 58 HVLVNAATGTGKTVAYLAPIIN 79 (512)
Q Consensus 58 ~~lv~~pTGsGKT~~~~~~~~~ 79 (512)
-.++.|+.|||||..+...+..
T Consensus 7 i~l~tG~pGsGKT~~a~~~~~~ 28 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMVSMMAN 28 (199)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 3689999999999876554444
No 288
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=75.62 E-value=2.1 Score=40.31 Aligned_cols=23 Identities=22% Similarity=0.430 Sum_probs=17.3
Q ss_pred HHhhcCCC--EEEEccCCChHhHHH
Q 010357 51 PVILSGRH--VLVNAATGTGKTVAY 73 (512)
Q Consensus 51 ~~~~~~~~--~lv~~pTGsGKT~~~ 73 (512)
..+++|-| ++..|+||||||++.
T Consensus 83 ~~~l~G~N~tifAYGqTGSGKTyTm 107 (366)
T 2zfi_A 83 QHAFEGYNVCIFAYGQTGAGKSYTM 107 (366)
T ss_dssp HHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHhcCCeeEEEEeCCCCCCCceEe
Confidence 34457766 467899999999775
No 289
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=75.61 E-value=1.9 Score=40.27 Aligned_cols=24 Identities=21% Similarity=0.423 Sum_probs=18.1
Q ss_pred HHHhhcCCCE--EEEccCCChHhHHH
Q 010357 50 IPVILSGRHV--LVNAATGTGKTVAY 73 (512)
Q Consensus 50 ~~~~~~~~~~--lv~~pTGsGKT~~~ 73 (512)
+..+++|-|. +.-|+||||||++.
T Consensus 85 v~~~l~G~n~tifAYGqTGSGKTyTm 110 (354)
T 3gbj_A 85 LQNAFDGYNACIFAYGQTGSGKSYTM 110 (354)
T ss_dssp HHHHHTTCCEEEEEEECTTSSHHHHH
T ss_pred HHHHhCCceeEEEeeCCCCCCCceEE
Confidence 3445577764 67899999999875
No 290
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=75.55 E-value=5.4 Score=36.41 Aligned_cols=51 Identities=20% Similarity=0.275 Sum_probs=31.5
Q ss_pred CccCCcccCCCCHHHHHHHHHhcCCCCCcHHHHHHHHHhhcCCCEEEEccCCChHhHHHHHHHHH
Q 010357 15 FASCSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIIN 79 (512)
Q Consensus 15 ~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~pTGsGKT~~~~~~~~~ 79 (512)
+...+|+++--+++..+.+.+. +.. -...++++.||+|+|||..+...+..
T Consensus 11 ~~p~~~~~~~g~~~~~~~l~~~--l~~------------~~~~~~ll~G~~G~GKt~la~~l~~~ 61 (319)
T 2chq_A 11 YRPRTLDEVVGQDEVIQRLKGY--VER------------KNIPHLLFSGPPGTGKTATAIALARD 61 (319)
T ss_dssp TSCSSGGGSCSCHHHHHHHHTT--TTT------------TCCCCEEEESSSSSSHHHHHHHHHHH
T ss_pred cCCCCHHHHhCCHHHHHHHHHH--HhC------------CCCCeEEEECcCCcCHHHHHHHHHHH
Confidence 3445666666566666666432 111 01235999999999999776555443
No 291
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=75.48 E-value=1.9 Score=36.05 Aligned_cols=19 Identities=26% Similarity=0.553 Sum_probs=15.1
Q ss_pred CCEEEEccCCChHhHHHHH
Q 010357 57 RHVLVNAATGTGKTVAYLA 75 (512)
Q Consensus 57 ~~~lv~~pTGsGKT~~~~~ 75 (512)
+-+.+.||+|+|||...-+
T Consensus 2 ~ii~l~GpsGaGKsTl~~~ 20 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKK 20 (186)
T ss_dssp CCEEEESSSSSSHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHH
Confidence 4578999999999966543
No 292
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=75.46 E-value=2 Score=40.24 Aligned_cols=24 Identities=29% Similarity=0.437 Sum_probs=17.8
Q ss_pred HHHhhcCCCE--EEEccCCChHhHHH
Q 010357 50 IPVILSGRHV--LVNAATGTGKTVAY 73 (512)
Q Consensus 50 ~~~~~~~~~~--lv~~pTGsGKT~~~ 73 (512)
+..+++|-|+ +.-|+||||||++.
T Consensus 96 v~~~l~G~N~tIfAYGqTGSGKTyTM 121 (358)
T 2nr8_A 96 VSQALDGYNGTIMCYGQTGAGKTYTM 121 (358)
T ss_dssp HHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHhCCCceEEEEECCCCCCCceEe
Confidence 3445577764 66899999999875
No 293
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=75.44 E-value=1.9 Score=40.17 Aligned_cols=24 Identities=29% Similarity=0.530 Sum_probs=18.2
Q ss_pred HHHhhcCCC--EEEEccCCChHhHHH
Q 010357 50 IPVILSGRH--VLVNAATGTGKTVAY 73 (512)
Q Consensus 50 ~~~~~~~~~--~lv~~pTGsGKT~~~ 73 (512)
+..+++|-| ++.-|+||||||++.
T Consensus 77 v~~~l~G~n~tifAYGqTGSGKTyTM 102 (347)
T 1f9v_A 77 VQSSLDGYNVCIFAYGQTGSGKTFTM 102 (347)
T ss_dssp HGGGGGTCCEEEEEECCTTSSHHHHH
T ss_pred HHHhcCCceeEEEEECCCCCCCcEec
Confidence 344567766 467899999999876
No 294
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=75.44 E-value=2.7 Score=38.74 Aligned_cols=23 Identities=22% Similarity=0.186 Sum_probs=17.3
Q ss_pred CEEEEccCCChHhHHHHHHHHHH
Q 010357 58 HVLVNAATGTGKTVAYLAPIINH 80 (512)
Q Consensus 58 ~~lv~~pTGsGKT~~~~~~~~~~ 80 (512)
-+.+.+++|+|||..+...+...
T Consensus 107 vI~ivG~~G~GKTT~~~~LA~~l 129 (320)
T 1zu4_A 107 IFMLVGVNGTGKTTSLAKMANYY 129 (320)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 46788999999998776555443
No 295
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=75.30 E-value=6.9 Score=37.98 Aligned_cols=34 Identities=24% Similarity=0.348 Sum_probs=25.1
Q ss_pred HHHHHh---hcCCCEEEEccCCChHhHHHHHHHHHHH
Q 010357 48 QAIPVI---LSGRHVLVNAATGTGKTVAYLAPIINHL 81 (512)
Q Consensus 48 ~~~~~~---~~~~~~lv~~pTGsGKT~~~~~~~~~~~ 81 (512)
++++.+ .+|+..++.+|.|+|||..+...+.+..
T Consensus 140 r~ID~L~pi~kGq~~~i~G~sGvGKTtL~~~l~~~~~ 176 (473)
T 1sky_E 140 KVVDLLAPYIKGGKIGLFGGAGVGKTVLIQELIHNIA 176 (473)
T ss_dssp HHHHHHSCEETTCEEEEECCSSSCHHHHHHHHHHHHH
T ss_pred hHHHHHhhhccCCEEEEECCCCCCccHHHHHHHhhhh
Confidence 355554 4788999999999999987766555443
No 296
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=75.18 E-value=2 Score=37.10 Aligned_cols=23 Identities=13% Similarity=0.163 Sum_probs=17.4
Q ss_pred hhcCCCEEEEccCCChHhHHHHH
Q 010357 53 ILSGRHVLVNAATGTGKTVAYLA 75 (512)
Q Consensus 53 ~~~~~~~lv~~pTGsGKT~~~~~ 75 (512)
+..|+-+.+.||+|+|||...-+
T Consensus 20 i~~G~~~~lvGpsGsGKSTLl~~ 42 (218)
T 1z6g_A 20 MNNIYPLVICGPSGVGKGTLIKK 42 (218)
T ss_dssp --CCCCEEEECSTTSSHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHH
Confidence 34678899999999999966443
No 297
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=74.86 E-value=3.2 Score=34.58 Aligned_cols=24 Identities=25% Similarity=0.214 Sum_probs=18.2
Q ss_pred cCCCEEEEccCCChHhHHHHHHHH
Q 010357 55 SGRHVLVNAATGTGKTVAYLAPII 78 (512)
Q Consensus 55 ~~~~~lv~~pTGsGKT~~~~~~~~ 78 (512)
.+..+++.|+.|||||..+-..+.
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~ 35 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLAD 35 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 345678999999999987655443
No 298
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=74.57 E-value=1.9 Score=40.36 Aligned_cols=23 Identities=30% Similarity=0.528 Sum_probs=17.3
Q ss_pred HHhhcCCC--EEEEccCCChHhHHH
Q 010357 51 PVILSGRH--VLVNAATGTGKTVAY 73 (512)
Q Consensus 51 ~~~~~~~~--~lv~~pTGsGKT~~~ 73 (512)
..++.|-| ++.-|+||||||++.
T Consensus 82 ~~~l~G~n~tifAYGqTGSGKTyTM 106 (359)
T 1x88_A 82 DEVIMGYNCTIFAYGQTGTGKTFTM 106 (359)
T ss_dssp HHHHTTCEEEEEEEECTTSSHHHHH
T ss_pred HHHhCCCceEEEEeCCCCCCCceEE
Confidence 34557766 467999999999775
No 299
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Probab=74.51 E-value=2.1 Score=40.48 Aligned_cols=23 Identities=30% Similarity=0.501 Sum_probs=17.4
Q ss_pred HHhhcCCC--EEEEccCCChHhHHH
Q 010357 51 PVILSGRH--VLVNAATGTGKTVAY 73 (512)
Q Consensus 51 ~~~~~~~~--~lv~~pTGsGKT~~~ 73 (512)
..+++|-| ++.-|+||||||++.
T Consensus 128 ~~~l~G~N~tifAYGQTGSGKTyTM 152 (387)
T 2heh_A 128 QTIFEGGKATCFAYGQTGSGKTHTM 152 (387)
T ss_dssp HHHHTTCEEEEEEESCTTSSHHHHH
T ss_pred HHHhcCCceEEEEecCCCCCCCeEe
Confidence 34556765 467899999999885
No 300
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=74.30 E-value=9.6 Score=32.98 Aligned_cols=77 Identities=6% Similarity=0.061 Sum_probs=51.5
Q ss_pred ccCceEEEEeecchhhhhHHHhhhhhcCCCCCCChhHHHhhhhccceeeecCCCCHHHHHHHHHhhhcCCCcEEEeecc-
Q 010357 317 EVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDV- 395 (512)
Q Consensus 317 ~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~l~g~~~~~~r~~~~~~f~~~~~~vLvaT~~- 395 (512)
..+.+++|.++++..+..+++.+....... +..+..++|+.+.......+ +..+|+|+|.-
T Consensus 95 ~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~-------------~~~~~~~~g~~~~~~~~~~~-----~~~~iiv~Tp~~ 156 (236)
T 2pl3_A 95 TDGLGVLIISPTRELAYQTFEVLRKVGKNH-------------DFSAGLIIGGKDLKHEAERI-----NNINILVCTPGR 156 (236)
T ss_dssp GGCCCEEEECSSHHHHHHHHHHHHHHTTTS-------------SCCEEEECCC--CHHHHHHH-----TTCSEEEECHHH
T ss_pred cCCceEEEEeCCHHHHHHHHHHHHHHhCCC-------------CeeEEEEECCCCHHHHHHhC-----CCCCEEEECHHH
Confidence 345789999999999999999888763211 46788889987665544333 35789999952
Q ss_pred c----cc--CCCCCCCcEEEEe
Q 010357 396 A----AR--GLDFPKVKCIIQY 411 (512)
Q Consensus 396 ~----~~--Gldip~~~~VI~~ 411 (512)
+ .. .+++.++++||.-
T Consensus 157 l~~~l~~~~~~~~~~~~~lViD 178 (236)
T 2pl3_A 157 LLQHMDETVSFHATDLQMLVLD 178 (236)
T ss_dssp HHHHHHHCSSCCCTTCCEEEET
T ss_pred HHHHHHhcCCcccccccEEEEe
Confidence 1 12 3566677777743
No 301
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=74.26 E-value=10 Score=36.77 Aligned_cols=95 Identities=14% Similarity=0.140 Sum_probs=64.5
Q ss_pred CCchHHHHHHHHHhhhccccCceEEEEeecchhhhhHHHhhhhhcCCCCCCChhHHHhhhhccceeeecCCCCHHHHHHH
Q 010357 299 CGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTT 378 (512)
Q Consensus 299 ~~~k~~~l~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~l~g~~~~~~r~~~ 378 (512)
...|.......+...+. ..+.++||.|+++..+..+.+.+.+.... +...+..+||+....++...
T Consensus 33 G~GKT~~~~~~~~~~~~-~~~~~~liv~P~~~L~~q~~~~~~~~~~~-------------~~~~v~~~~g~~~~~~~~~~ 98 (494)
T 1wp9_A 33 GLGKTLIAMMIAEYRLT-KYGGKVLMLAPTKPLVLQHAESFRRLFNL-------------PPEKIVALTGEKSPEERSKA 98 (494)
T ss_dssp TSCHHHHHHHHHHHHHH-HSCSCEEEECSSHHHHHHHHHHHHHHBCS-------------CGGGEEEECSCSCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHh-cCCCeEEEEECCHHHHHHHHHHHHHHhCc-------------chhheEEeeCCcchhhhhhh
Confidence 34566666555555443 45689999999999999999888876310 14478899999988776554
Q ss_pred HHhhhcCCCcEEEeecc-cc-----cCCCCCCCcEEEEeC
Q 010357 379 FGAFKTEKKALLLSTDV-AA-----RGLDFPKVKCIIQYD 412 (512)
Q Consensus 379 ~~~f~~~~~~vLvaT~~-~~-----~Gldip~~~~VI~~~ 412 (512)
.. ..+|+|+|.- +. ..+....+++||.-.
T Consensus 99 ~~-----~~~ivv~T~~~l~~~~~~~~~~~~~~~~vIiDE 133 (494)
T 1wp9_A 99 WA-----RAKVIVATPQTIENDLLAGRISLEDVSLIVFDE 133 (494)
T ss_dssp HH-----HCSEEEECHHHHHHHHHTTSCCTTSCSEEEEET
T ss_pred cc-----CCCEEEecHHHHHHHHhcCCcchhhceEEEEEC
Confidence 32 3589999952 22 135666788777533
No 302
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=74.23 E-value=2.3 Score=34.82 Aligned_cols=20 Identities=5% Similarity=-0.052 Sum_probs=15.9
Q ss_pred CEEEEccCCChHhHHHHHHH
Q 010357 58 HVLVNAATGTGKTVAYLAPI 77 (512)
Q Consensus 58 ~~lv~~pTGsGKT~~~~~~~ 77 (512)
.+++.|+.|||||.++-..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~ 22 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLS 22 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 47899999999997765543
No 303
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=73.90 E-value=2.1 Score=40.31 Aligned_cols=22 Identities=41% Similarity=0.588 Sum_probs=16.8
Q ss_pred HhhcCCC--EEEEccCCChHhHHH
Q 010357 52 VILSGRH--VLVNAATGTGKTVAY 73 (512)
Q Consensus 52 ~~~~~~~--~lv~~pTGsGKT~~~ 73 (512)
.+++|-| ++..|+||||||++.
T Consensus 95 ~~l~G~n~tifAYGqTGSGKTyTm 118 (373)
T 2wbe_C 95 EVLNGYNCTVFAYGQTGTGKTHTM 118 (373)
T ss_dssp HHHHTCCEEEEEECSTTSSHHHHH
T ss_pred HHhCCceEEEEeecCCCCCcceec
Confidence 3456766 467999999999775
No 304
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=73.84 E-value=7.8 Score=32.59 Aligned_cols=30 Identities=30% Similarity=0.269 Sum_probs=20.1
Q ss_pred EccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEc
Q 010357 62 NAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLV 100 (512)
Q Consensus 62 ~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~ 100 (512)
...-|+|||.++...+...... +.+++++=
T Consensus 8 s~kgG~GKTt~a~~la~~la~~---------g~~vlliD 37 (206)
T 4dzz_A 8 NPKGGSGKTTAVINIATALSRS---------GYNIAVVD 37 (206)
T ss_dssp CSSTTSSHHHHHHHHHHHHHHT---------TCCEEEEE
T ss_pred eCCCCccHHHHHHHHHHHHHHC---------CCeEEEEE
Confidence 4567899999887766655443 55566653
No 305
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=73.59 E-value=2.2 Score=40.78 Aligned_cols=25 Identities=32% Similarity=0.502 Sum_probs=19.0
Q ss_pred HHHHhhcCCCE--EEEccCCChHhHHH
Q 010357 49 AIPVILSGRHV--LVNAATGTGKTVAY 73 (512)
Q Consensus 49 ~~~~~~~~~~~--lv~~pTGsGKT~~~ 73 (512)
.+..++.|-|+ +..|+||||||++.
T Consensus 130 lv~~~l~G~n~tifAYGqTGSGKTyTM 156 (412)
T 3u06_A 130 LIQSALDGYNICIFAYGQTGSGKTYTM 156 (412)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHHCCCceEEEEecCCCCCCeeEe
Confidence 44556677764 67899999999875
No 306
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=73.56 E-value=1.8 Score=39.94 Aligned_cols=23 Identities=26% Similarity=0.208 Sum_probs=18.3
Q ss_pred CCCEEEEccCCChHhHHHHHHHH
Q 010357 56 GRHVLVNAATGTGKTVAYLAPII 78 (512)
Q Consensus 56 ~~~~lv~~pTGsGKT~~~~~~~~ 78 (512)
..++++.||+|+|||..+-..+.
T Consensus 38 ~~~vll~G~~GtGKT~la~~i~~ 60 (324)
T 1hqc_A 38 LEHLLLFGPPGLGKTTLAHVIAH 60 (324)
T ss_dssp CCCCEEECCTTCCCHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999987655443
No 307
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=73.45 E-value=1.9 Score=40.49 Aligned_cols=25 Identities=24% Similarity=0.470 Sum_probs=18.6
Q ss_pred HHHHhhcCCC--EEEEccCCChHhHHH
Q 010357 49 AIPVILSGRH--VLVNAATGTGKTVAY 73 (512)
Q Consensus 49 ~~~~~~~~~~--~lv~~pTGsGKT~~~ 73 (512)
.+..+++|-| ++..|+||||||++.
T Consensus 71 lv~~~l~G~n~tifAYGqTGSGKTyTM 97 (369)
T 3cob_A 71 LVQSAVDGYNVCIFAYGQTGSGKTFTI 97 (369)
T ss_dssp HHHHHHTTCEEEEEEEECTTSSHHHHH
T ss_pred hhHhhhcCCceEEEEECCCCCCCeEee
Confidence 3445567776 466899999999875
No 308
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=73.29 E-value=2 Score=35.45 Aligned_cols=20 Identities=25% Similarity=0.248 Sum_probs=15.6
Q ss_pred CEEEEccCCChHhHHHHHHH
Q 010357 58 HVLVNAATGTGKTVAYLAPI 77 (512)
Q Consensus 58 ~~lv~~pTGsGKT~~~~~~~ 77 (512)
-+++.|++|||||..+-..+
T Consensus 4 ~I~i~G~~GsGKST~a~~L~ 23 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWAREFI 23 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHHHH
Confidence 36899999999997765443
No 309
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=73.26 E-value=3.8 Score=37.45 Aligned_cols=22 Identities=41% Similarity=0.446 Sum_probs=16.6
Q ss_pred CCCEEEEccCCChHhHHHHHHH
Q 010357 56 GRHVLVNAATGTGKTVAYLAPI 77 (512)
Q Consensus 56 ~~~~lv~~pTGsGKT~~~~~~~ 77 (512)
+.-+.+.||+|+|||......+
T Consensus 102 g~vi~lvG~nGsGKTTll~~La 123 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLG 123 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHH
Confidence 4457789999999997655444
No 310
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=73.19 E-value=1.9 Score=38.22 Aligned_cols=59 Identities=19% Similarity=0.128 Sum_probs=34.5
Q ss_pred CccCCcccCCCCHHHHHHHHHhcCCCCCcHHHHHHHHHhh--cCCCEEEEccCCChHhHHHHHHH
Q 010357 15 FASCSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVIL--SGRHVLVNAATGTGKTVAYLAPI 77 (512)
Q Consensus 15 ~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~Q~~~~~~~~--~~~~~lv~~pTGsGKT~~~~~~~ 77 (512)
.+..+|+++.-.++....+++.. . ... ...++..+- -.+.+++.||+|+|||..+-..+
T Consensus 10 ~~~~~~~~i~g~~~~~~~l~~l~-~--~~~-~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~ 70 (254)
T 1ixz_A 10 APKVTFKDVAGAEEAKEELKEIV-E--FLK-NPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVA 70 (254)
T ss_dssp CCSCCGGGCCSCHHHHHHHHHHH-H--HHH-CHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCCHHHhCCcHHHHHHHHHHH-H--HHH-CHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHH
Confidence 34567888877777777774321 1 111 112333321 12348999999999997654433
No 311
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=72.99 E-value=2.6 Score=40.76 Aligned_cols=22 Identities=27% Similarity=0.508 Sum_probs=17.0
Q ss_pred HhhcCCC--EEEEccCCChHhHHH
Q 010357 52 VILSGRH--VLVNAATGTGKTVAY 73 (512)
Q Consensus 52 ~~~~~~~--~lv~~pTGsGKT~~~ 73 (512)
.+++|-| ++..|+||||||++.
T Consensus 131 ~~l~GyN~tIfAYGQTGSGKTyTM 154 (443)
T 2owm_A 131 HNFEGYHTCIFAYGQTGSGKSYTM 154 (443)
T ss_dssp HHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HhhcCCceEEEEeCCCCCCCCEEe
Confidence 3457766 467899999999875
No 312
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}
Probab=72.97 E-value=2.1 Score=40.53 Aligned_cols=32 Identities=31% Similarity=0.438 Sum_probs=23.1
Q ss_pred CcHHHHHHHHH--------hhcCCC--EEEEccCCChHhHHH
Q 010357 42 PTKVQAQAIPV--------ILSGRH--VLVNAATGTGKTVAY 73 (512)
Q Consensus 42 ~~~~Q~~~~~~--------~~~~~~--~lv~~pTGsGKT~~~ 73 (512)
+..-|.+++.. +++|-| ++.-|+||||||++.
T Consensus 75 ~~~tQ~~Vy~~~~~plv~~~l~G~N~tifAYGqTGSGKTyTM 116 (388)
T 3bfn_A 75 ERSTQQDIYAGSVQPILRHLLEGQNASVLAYGPTGAGKTHTM 116 (388)
T ss_dssp TTCCHHHHHHHHTGGGHHHHTTTCCEEEEEESCTTSSHHHHH
T ss_pred CCCCHhHHHHHHHHHHHHHhhcCceeeEeeecCCCCCCCeEe
Confidence 44557777653 456766 467899999999775
No 313
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=72.51 E-value=13 Score=34.87 Aligned_cols=98 Identities=14% Similarity=0.151 Sum_probs=63.6
Q ss_pred CchHHHHH-HHHHhhhccccCceEEEEeecchhhhhHHHhhhhhcCCCCCCChhHHHhhhhccceeeecCCCCHHHHHHH
Q 010357 300 GSRLAVLL-SILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTT 378 (512)
Q Consensus 300 ~~k~~~l~-~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~l~g~~~~~~r~~~ 378 (512)
..|..... ..+..+.....+.++||.++++..+..+++.+...... .++..+..++|+.+.......
T Consensus 56 sGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~------------~~~~~~~~~~g~~~~~~~~~~ 123 (391)
T 1xti_A 56 MGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKY------------MPNVKVAVFFGGLSIKKDEEV 123 (391)
T ss_dssp SSHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHHHHHHHHTTT------------CTTCCEEEECTTSCHHHHHHH
T ss_pred CcHHHHHHHHHHHhhcccCCCeeEEEECCCHHHHHHHHHHHHHHHhh------------CCCeEEEEEeCCCCHHHHHHH
Confidence 34554433 33333322233569999999999999998888775322 126778889999887665543
Q ss_pred HHhhhcCCCcEEEeecc-c-----ccCCCCCCCcEEEEeC
Q 010357 379 FGAFKTEKKALLLSTDV-A-----ARGLDFPKVKCIIQYD 412 (512)
Q Consensus 379 ~~~f~~~~~~vLvaT~~-~-----~~Gldip~~~~VI~~~ 412 (512)
+.++..+|+|+|.- + ...+++..+++||.-.
T Consensus 124 ---~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vViDE 160 (391)
T 1xti_A 124 ---LKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDE 160 (391)
T ss_dssp ---HHHSCCSEEEECHHHHHHHHHTTSSCCTTCSEEEECS
T ss_pred ---HhcCCCCEEEECHHHHHHHHHcCCccccccCEEEEeC
Confidence 44566799999953 2 2345677788877533
No 314
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=72.38 E-value=3.6 Score=37.58 Aligned_cols=21 Identities=19% Similarity=0.260 Sum_probs=16.1
Q ss_pred CCEEEEccCCChHhHHHHHHH
Q 010357 57 RHVLVNAATGTGKTVAYLAPI 77 (512)
Q Consensus 57 ~~~lv~~pTGsGKT~~~~~~~ 77 (512)
.-+.+.||+|+|||......+
T Consensus 101 ~vi~lvG~nGsGKTTll~~La 121 (302)
T 3b9q_A 101 AVIMIVGVNGGGKTTSLGKLA 121 (302)
T ss_dssp EEEEEECCTTSCHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHH
Confidence 346789999999997765544
No 315
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=72.34 E-value=1.9 Score=35.86 Aligned_cols=23 Identities=22% Similarity=0.265 Sum_probs=17.8
Q ss_pred cCCCEEEEccCCChHhHHHHHHH
Q 010357 55 SGRHVLVNAATGTGKTVAYLAPI 77 (512)
Q Consensus 55 ~~~~~lv~~pTGsGKT~~~~~~~ 77 (512)
.|..+++.|++|||||..+-..+
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~La 25 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASRLA 25 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 34568899999999998765544
No 316
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=72.34 E-value=9.6 Score=41.62 Aligned_cols=97 Identities=11% Similarity=0.111 Sum_probs=67.4
Q ss_pred CCchHHHHHHHHHhhhccccCceEEEEeecchhhhhHHHhhhhhcCCCCCCChhHHHhhhhcc----ceeeecCCCCHHH
Q 010357 299 CGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRC----KTFRLHGNMKQED 374 (512)
Q Consensus 299 ~~~k~~~l~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~----~v~~l~g~~~~~~ 374 (512)
.+.|....+..+.... ..+.+++|.++++..+..+++.++...... +. .+..++|+.+...
T Consensus 81 GSGKTl~~lp~l~~~~--~~~~~~lil~PtreLa~Q~~~~l~~l~~~~-------------~i~~~~~v~~~~Gg~~~~~ 145 (1054)
T 1gku_B 81 GVGKTSFGLAMSLFLA--LKGKRCYVIFPTSLLVIQAAETIRKYAEKA-------------GVGTENLIGYYHGRIPKRE 145 (1054)
T ss_dssp TSCSHHHHHHHHHHHH--TTSCCEEEEESCHHHHHHHHHHHHHHHTTT-------------CCSGGGSEEECCSSCCSHH
T ss_pred CCCHHHHHHHHHHHHh--hcCCeEEEEeccHHHHHHHHHHHHHHHhhc-------------CCCccceEEEEeCCCChhh
Confidence 3456544444444442 246799999999999999999988763221 34 7889999999998
Q ss_pred HHHHHHhhhcCCCcEEEeecc-cccCCC-CCCCcEEEEeC
Q 010357 375 RRTTFGAFKTEKKALLLSTDV-AARGLD-FPKVKCIIQYD 412 (512)
Q Consensus 375 r~~~~~~f~~~~~~vLvaT~~-~~~Gld-ip~~~~VI~~~ 412 (512)
+....+.+.+ .+|+|+|+- +..-+. +..+++||.-.
T Consensus 146 ~~~~~~~l~~--~~IlV~TP~~L~~~l~~L~~l~~lViDE 183 (1054)
T 1gku_B 146 KENFMQNLRN--FKIVITTTQFLSKHYRELGHFDFIFVDD 183 (1054)
T ss_dssp HHHHHHSGGG--CSEEEEEHHHHHHCSTTSCCCSEEEESC
T ss_pred HHHHHhhccC--CCEEEEcHHHHHHHHHHhccCCEEEEeC
Confidence 8888888877 899999963 221111 44677777533
No 317
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Probab=72.21 E-value=2.5 Score=39.84 Aligned_cols=32 Identities=28% Similarity=0.441 Sum_probs=21.7
Q ss_pred CcHHHHHHH-------HHhhcCCC--EEEEccCCChHhHHH
Q 010357 42 PTKVQAQAI-------PVILSGRH--VLVNAATGTGKTVAY 73 (512)
Q Consensus 42 ~~~~Q~~~~-------~~~~~~~~--~lv~~pTGsGKT~~~ 73 (512)
+..-|.+++ ..+++|-| ++.-|+||||||++.
T Consensus 93 ~~~~Q~~Vy~~v~~lv~~~l~G~N~tifAYGqTGSGKTyTM 133 (376)
T 2rep_A 93 PGSGQDEVFEEIAMLVQSALDGYPVCIFAYGQTGSGKTFTM 133 (376)
T ss_dssp TTCCHHHHHHHHHHHHHGGGGTCCEEEEEECSTTSSHHHHH
T ss_pred CcccchhhhhhHHHHHHHhcCCCceEEEEeCCCCCCCceEe
Confidence 344465554 34557766 467899999999775
No 318
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=72.16 E-value=2.4 Score=35.98 Aligned_cols=23 Identities=35% Similarity=0.463 Sum_probs=17.8
Q ss_pred cCCCEEEEccCCChHhHHHHHHH
Q 010357 55 SGRHVLVNAATGTGKTVAYLAPI 77 (512)
Q Consensus 55 ~~~~~lv~~pTGsGKT~~~~~~~ 77 (512)
.+..+++.||.|||||..+-..+
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~ 50 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVA 50 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 45678899999999997755443
No 319
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=72.12 E-value=4.6 Score=45.95 Aligned_cols=41 Identities=22% Similarity=0.251 Sum_probs=32.9
Q ss_pred cCCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcHH
Q 010357 55 SGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRE 104 (512)
Q Consensus 55 ~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~ 104 (512)
.++.+++.+|+|+|||..++..+.+.+.. +.+++|+.-...
T Consensus 33 ~G~i~lI~G~pGsGKT~LAlqla~~~~~~---------G~~vlYI~te~~ 73 (1706)
T 3cmw_A 33 MGRIVEIYGPESSGKTTLTLQVIAAAQRE---------GKTCAFIDAEHA 73 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHT---------TCCEEEECTTSC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhC---------CCceEEEEecCc
Confidence 46789999999999999988888777655 667888876543
No 320
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=71.95 E-value=3 Score=40.30 Aligned_cols=26 Identities=19% Similarity=0.158 Sum_probs=19.8
Q ss_pred CEEEEccCCChHhHHHHHHHHHHHhh
Q 010357 58 HVLVNAATGTGKTVAYLAPIINHLQS 83 (512)
Q Consensus 58 ~~lv~~pTGsGKT~~~~~~~~~~~~~ 83 (512)
.+++.+++|+|||..+...+......
T Consensus 101 vI~ivG~~GvGKTTla~~La~~l~~~ 126 (432)
T 2v3c_C 101 VILLVGIQGSGKTTTAAKLARYIQKR 126 (432)
T ss_dssp CEEEECCSSSSTTHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 67899999999998877666554433
No 321
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=71.90 E-value=1.6 Score=36.05 Aligned_cols=21 Identities=19% Similarity=0.215 Sum_probs=16.7
Q ss_pred cCCCEEEEccCCChHhHHHHH
Q 010357 55 SGRHVLVNAATGTGKTVAYLA 75 (512)
Q Consensus 55 ~~~~~lv~~pTGsGKT~~~~~ 75 (512)
.|.-+.+.||+|||||..+-.
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHH
Confidence 456678999999999976543
No 322
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=71.71 E-value=2.5 Score=39.58 Aligned_cols=19 Identities=32% Similarity=0.466 Sum_probs=15.4
Q ss_pred cCCC--EEEEccCCChHhHHH
Q 010357 55 SGRH--VLVNAATGTGKTVAY 73 (512)
Q Consensus 55 ~~~~--~lv~~pTGsGKT~~~ 73 (512)
.|.+ ++.-|+||||||++.
T Consensus 82 ~G~n~tifAYGqTGSGKTyTM 102 (360)
T 1ry6_A 82 NGCVCSCFAYGQTGSGKTYTM 102 (360)
T ss_dssp HCCEEEEEEECCTTSSHHHHH
T ss_pred CCceeEEEeeCCCCCCCCEEE
Confidence 3666 578999999999875
No 323
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=71.62 E-value=2 Score=35.34 Aligned_cols=21 Identities=14% Similarity=0.207 Sum_probs=16.6
Q ss_pred CCCEEEEccCCChHhHHHHHH
Q 010357 56 GRHVLVNAATGTGKTVAYLAP 76 (512)
Q Consensus 56 ~~~~lv~~pTGsGKT~~~~~~ 76 (512)
+..+++.|+.|||||..+-..
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l 28 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEV 28 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHH
Confidence 456889999999999775543
No 324
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=71.56 E-value=12 Score=32.85 Aligned_cols=77 Identities=13% Similarity=0.087 Sum_probs=52.5
Q ss_pred CceEEEEeecchhhhhHHHhhhhhcCCCCCCChhHHHhhhhccceeeecCCCCHHHHHHHHHhhhcCCCcEEEeecc-c-
Q 010357 319 SQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDV-A- 396 (512)
Q Consensus 319 ~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~l~g~~~~~~r~~~~~~f~~~~~~vLvaT~~-~- 396 (512)
+.++||.++++..+..+++.+....... +..+..++|+.+.......+ ....+|+|+|.- +
T Consensus 100 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~-------------~~~~~~~~g~~~~~~~~~~~----~~~~~Ivv~Tp~~l~ 162 (253)
T 1wrb_A 100 YPKCLILAPTRELAIQILSESQKFSLNT-------------PLRSCVVYGGADTHSQIREV----QMGCHLLVATPGRLV 162 (253)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHHTTS-------------SCCEEEECSSSCSHHHHHHH----SSCCSEEEECHHHHH
T ss_pred CceEEEEECCHHHHHHHHHHHHHHhccC-------------CceEEEEECCCCHHHHHHHh----CCCCCEEEECHHHHH
Confidence 3589999999999999998887753211 45677788887765544332 235789999963 1
Q ss_pred ---c-cCCCCCCCcEEEEeC
Q 010357 397 ---A-RGLDFPKVKCIIQYD 412 (512)
Q Consensus 397 ---~-~Gldip~~~~VI~~~ 412 (512)
. ..+++..++++|.-.
T Consensus 163 ~~l~~~~~~~~~~~~lViDE 182 (253)
T 1wrb_A 163 DFIEKNKISLEFCKYIVLDE 182 (253)
T ss_dssp HHHHTTSBCCTTCCEEEEET
T ss_pred HHHHcCCCChhhCCEEEEeC
Confidence 1 235677788877533
No 325
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=71.47 E-value=3.1 Score=34.22 Aligned_cols=21 Identities=19% Similarity=0.192 Sum_probs=16.9
Q ss_pred CEEEEccCCChHhHHHHHHHH
Q 010357 58 HVLVNAATGTGKTVAYLAPII 78 (512)
Q Consensus 58 ~~lv~~pTGsGKT~~~~~~~~ 78 (512)
.+++.+++|||||..+-..+.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 689999999999987655443
No 326
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=71.38 E-value=2.9 Score=34.12 Aligned_cols=22 Identities=18% Similarity=0.261 Sum_probs=17.8
Q ss_pred CCEEEEccCCChHhHHHHHHHH
Q 010357 57 RHVLVNAATGTGKTVAYLAPII 78 (512)
Q Consensus 57 ~~~lv~~pTGsGKT~~~~~~~~ 78 (512)
+++++.|+.|||||.++-..+.
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999988765543
No 327
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=71.32 E-value=3.3 Score=34.68 Aligned_cols=25 Identities=16% Similarity=0.187 Sum_probs=19.1
Q ss_pred hcCCCEEEEccCCChHhHHHHHHHH
Q 010357 54 LSGRHVLVNAATGTGKTVAYLAPII 78 (512)
Q Consensus 54 ~~~~~~lv~~pTGsGKT~~~~~~~~ 78 (512)
..+..+++.|++|||||..+-..+.
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHH
Confidence 3456789999999999987655443
No 328
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=70.83 E-value=1.6 Score=45.77 Aligned_cols=61 Identities=20% Similarity=0.256 Sum_probs=37.9
Q ss_pred ccCCcccCCCCHHHHHHHHHhcCCC--CCcHHHHHHHHHhhcCCCEEEEccCCChHhHHHHHHHHH
Q 010357 16 ASCSFSSLGLHSTLCDQLRERLGFE--APTKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIIN 79 (512)
Q Consensus 16 ~~~~~~~~~l~~~~~~~l~~~~~~~--~~~~~Q~~~~~~~~~~~~~lv~~pTGsGKT~~~~~~~~~ 79 (512)
+..+|...+.-.+..+.+.+..-+. +|..++.- .+...+.+|+.||+|+|||+.+-..+.+
T Consensus 472 p~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~---g~~~~~gvLl~GPPGtGKT~lAkaiA~e 534 (806)
T 3cf2_A 472 PQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKF---GMTPSKGVLFYGPPGCGKTLLAKAIANE 534 (806)
T ss_dssp CCCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSS---CCCCCSCCEEESSTTSSHHHHHHHHHHT
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhc---CCCCCceEEEecCCCCCchHHHHHHHHH
Confidence 4567888888888888886643322 11111110 0112357899999999999776554433
No 329
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=70.72 E-value=1.9 Score=40.24 Aligned_cols=22 Identities=41% Similarity=0.299 Sum_probs=17.6
Q ss_pred CCCEEEEccCCChHhHHHHHHH
Q 010357 56 GRHVLVNAATGTGKTVAYLAPI 77 (512)
Q Consensus 56 ~~~~lv~~pTGsGKT~~~~~~~ 77 (512)
..++++.||+|+|||..+-..+
T Consensus 45 ~~~vLl~G~~GtGKT~la~~la 66 (350)
T 1g8p_A 45 IGGVLVFGDRGTGKSTAVRALA 66 (350)
T ss_dssp GCCEEEECCGGGCTTHHHHHHH
T ss_pred CceEEEECCCCccHHHHHHHHH
Confidence 4579999999999997765443
No 330
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=70.67 E-value=3 Score=36.87 Aligned_cols=23 Identities=26% Similarity=0.332 Sum_probs=19.1
Q ss_pred cCCCEEEEccCCChHhHHHHHHH
Q 010357 55 SGRHVLVNAATGTGKTVAYLAPI 77 (512)
Q Consensus 55 ~~~~~lv~~pTGsGKT~~~~~~~ 77 (512)
.++.+++.|++|+|||.++-..+
T Consensus 47 ~g~~i~l~G~~GsGKSTl~~~La 69 (250)
T 3nwj_A 47 NGRSMYLVGMMGSGKTTVGKIMA 69 (250)
T ss_dssp TTCCEEEECSTTSCHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHH
Confidence 38899999999999997765544
No 331
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=70.65 E-value=2.7 Score=35.85 Aligned_cols=24 Identities=21% Similarity=0.332 Sum_probs=17.4
Q ss_pred HhhcCCCEEEEccCCChHhHHHHH
Q 010357 52 VILSGRHVLVNAATGTGKTVAYLA 75 (512)
Q Consensus 52 ~~~~~~~~lv~~pTGsGKT~~~~~ 75 (512)
.+..|+-+.+.||+|+|||..+-+
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTLl~~ 39 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTVVRC 39 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHHHH
Confidence 466788889999999999966433
No 332
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=70.63 E-value=2.9 Score=41.43 Aligned_cols=52 Identities=12% Similarity=0.047 Sum_probs=33.6
Q ss_pred hhcCCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcHHHHHHHHHHH
Q 010357 53 ILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEIL 113 (512)
Q Consensus 53 ~~~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~ 113 (512)
+..|.-+++.|++|+|||..++..+.+.... .+.+++++.--- -..|+...+
T Consensus 239 l~~G~l~li~G~pG~GKT~lal~~a~~~a~~--------~g~~vl~~s~E~-s~~~l~~r~ 290 (503)
T 1q57_A 239 ARGGEVIMVTSGSGMVMSTFVRQQALQWGTA--------MGKKVGLAMLEE-SVEETAEDL 290 (503)
T ss_dssp CCTTCEEEEEESSCHHHHHHHHHHHHHHTTT--------SCCCEEEEESSS-CHHHHHHHH
T ss_pred cCCCeEEEEeecCCCCchHHHHHHHHHHHHh--------cCCcEEEEeccC-CHHHHHHHH
Confidence 3356678999999999998887777666432 145577776432 233444443
No 333
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=70.48 E-value=2.8 Score=35.92 Aligned_cols=21 Identities=19% Similarity=0.229 Sum_probs=16.7
Q ss_pred CEEEEccCCChHhHHHHHHHH
Q 010357 58 HVLVNAATGTGKTVAYLAPII 78 (512)
Q Consensus 58 ~~lv~~pTGsGKT~~~~~~~~ 78 (512)
.+++.||.|||||..+-..+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999988765543
No 334
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=70.46 E-value=2.6 Score=39.22 Aligned_cols=22 Identities=32% Similarity=0.332 Sum_probs=17.6
Q ss_pred CCEEEEccCCChHhHHHHHHHH
Q 010357 57 RHVLVNAATGTGKTVAYLAPII 78 (512)
Q Consensus 57 ~~~lv~~pTGsGKT~~~~~~~~ 78 (512)
..+++.||+|+|||..+-..+-
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~ 73 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIAS 73 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHH
Confidence 5799999999999977655443
No 335
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=70.45 E-value=5.6 Score=47.63 Aligned_cols=49 Identities=20% Similarity=0.250 Sum_probs=32.5
Q ss_pred HHHHHHHHHhcCCCCCcHHHHH----HHHHhhcCCCEEEEccCCChHhHHHHHHH
Q 010357 27 STLCDQLRERLGFEAPTKVQAQ----AIPVILSGRHVLVNAATGTGKTVAYLAPI 77 (512)
Q Consensus 27 ~~~~~~l~~~~~~~~~~~~Q~~----~~~~~~~~~~~lv~~pTGsGKT~~~~~~~ 77 (512)
..+.+.+. ..|+. +.+.+.. ....+..++.++++||||||||.++-..+
T Consensus 892 ~~i~~~~~-~~~l~-~~~~~~~K~~ql~e~~~~r~gvmlvGptgsGKTt~~~~La 944 (2695)
T 4akg_A 892 QCLKDAGQ-RSGFS-MSEEFLKKCMQFYYMQKTQQALILVGKAGCGKTATWKTVI 944 (2695)
T ss_dssp HHHHHHHH-HHTCC-CCHHHHHHHHHHHHHHHHCSEEEEECSTTSSHHHHHHHHH
T ss_pred HHHHHHHH-HcCCc-ccHHHHHHHHHHHHHHHhcceEEEECCCCCCHHHHHHHHH
Confidence 34455553 34776 6666632 33444567789999999999998865444
No 336
>3bs4_A Uncharacterized protein PH0321; structural genomics, unknown function, PSI-2, protein struct initiative; 1.60A {Pyrococcus horikoshii}
Probab=70.32 E-value=3.5 Score=36.63 Aligned_cols=52 Identities=8% Similarity=0.071 Sum_probs=33.8
Q ss_pred cCCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHH
Q 010357 55 SGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKL 116 (512)
Q Consensus 55 ~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 116 (512)
.|..+++.+.+|+|||..++..+.+.+.+ +.++++++-... ..++...+..+
T Consensus 20 ~gs~~li~g~p~~~~~~l~~qfl~~g~~~---------Ge~~~~~~~~e~-~~~l~~~~~~~ 71 (260)
T 3bs4_A 20 HSLILIHEEDASSRGKDILFYILSRKLKS---------DNLVGMFSISYP-LQLIIRILSRF 71 (260)
T ss_dssp TCEEEEEECSGGGCHHHHHHHHHHHHHHT---------TCEEEEEECSSC-HHHHHHHHHHT
T ss_pred CCcEEEEEeCCCccHHHHHHHHHHHHHHC---------CCcEEEEEEeCC-HHHHHHHHHHc
Confidence 45667888788888886666666666655 777888875533 34445555444
No 337
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=70.20 E-value=5.8 Score=32.56 Aligned_cols=19 Identities=21% Similarity=-0.064 Sum_probs=14.4
Q ss_pred CEEEEccCCChHhHHHHHH
Q 010357 58 HVLVNAATGTGKTVAYLAP 76 (512)
Q Consensus 58 ~~lv~~pTGsGKT~~~~~~ 76 (512)
-+.+.++.|||||......
T Consensus 6 ~i~i~G~sGsGKTTl~~~L 24 (169)
T 1xjc_A 6 VWQVVGYKHSGKTTLMEKW 24 (169)
T ss_dssp EEEEECCTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 3678999999999765443
No 338
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=70.18 E-value=3.9 Score=40.08 Aligned_cols=26 Identities=15% Similarity=0.114 Sum_probs=19.9
Q ss_pred cCCCEEEEccCCChHhHHHHHHHHHH
Q 010357 55 SGRHVLVNAATGTGKTVAYLAPIINH 80 (512)
Q Consensus 55 ~~~~~lv~~pTGsGKT~~~~~~~~~~ 80 (512)
...++++.||+|+|||..+-..+...
T Consensus 200 ~~~~~LL~G~pG~GKT~la~~la~~l 225 (468)
T 3pxg_A 200 TKNNPVLIGEPGVGKTAIAEGLAQQI 225 (468)
T ss_dssp SSCEEEEESCTTTTTHHHHHHHHHHH
T ss_pred CCCCeEEECCCCCCHHHHHHHHHHHH
Confidence 34589999999999998876554443
No 339
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=70.02 E-value=4 Score=47.20 Aligned_cols=47 Identities=21% Similarity=0.229 Sum_probs=36.3
Q ss_pred hcCCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcHHHHHHHH
Q 010357 54 LSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVY 110 (512)
Q Consensus 54 ~~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~ 110 (512)
-.++++++.+|+|+|||..+...+.+...+ +.+++|+.-. ++..+..
T Consensus 1079 ~~g~~vll~G~~GtGKT~la~~~~~ea~k~---------Ge~~~Fit~e-e~~~~L~ 1125 (2050)
T 3cmu_A 1079 PMGRIVEIYGPESSGKTTLTLQVIAAAQRE---------GKTCAFIDAE-HALDPIY 1125 (2050)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHHHHHTT---------TCCEEEECTT-SCCCHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHc---------CCeEEEEEcc-ccHHHHH
Confidence 366889999999999999999888888765 7778888644 4344444
No 340
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=69.91 E-value=11 Score=35.56 Aligned_cols=36 Identities=19% Similarity=0.253 Sum_probs=26.0
Q ss_pred CcHHHHHHHHHhh---cCCCEEEEccCCChHhHHHHHHH
Q 010357 42 PTKVQAQAIPVIL---SGRHVLVNAATGTGKTVAYLAPI 77 (512)
Q Consensus 42 ~~~~Q~~~~~~~~---~~~~~lv~~pTGsGKT~~~~~~~ 77 (512)
|-..-.++++.++ .|+.+.+.+|+|+|||......+
T Consensus 157 ~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Ia 195 (422)
T 3ice_A 157 TEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIA 195 (422)
T ss_dssp TTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHH
T ss_pred cccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHH
Confidence 3334446666554 68899999999999998775543
No 341
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=69.70 E-value=2.8 Score=35.07 Aligned_cols=21 Identities=24% Similarity=0.265 Sum_probs=16.6
Q ss_pred CCEEEEccCCChHhHHHHHHH
Q 010357 57 RHVLVNAATGTGKTVAYLAPI 77 (512)
Q Consensus 57 ~~~lv~~pTGsGKT~~~~~~~ 77 (512)
..+++.|++|||||..+-..+
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~ 24 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIV 24 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 457899999999998765543
No 342
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B*
Probab=69.56 E-value=4 Score=45.24 Aligned_cols=40 Identities=28% Similarity=0.469 Sum_probs=31.0
Q ss_pred EEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcHH
Q 010357 59 VLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRE 104 (512)
Q Consensus 59 ~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~ 104 (512)
-+|.|..|||||.+.+--+.+.+.. .+ .+.+++++||...
T Consensus 4 ~lV~agAGSGKT~~l~~ri~~ll~~-~~-----~~~~il~lVP~q~ 43 (1166)
T 3u4q_B 4 EFLVGRSGSGKTKLIINSIQDELRR-AP-----FGKPIIFLVPDQM 43 (1166)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHHHH-CT-----TSSCEEEECCGGG
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHh-CC-----CCCcEEEEecCcc
Confidence 3789999999999988888777765 21 2467999999764
No 343
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=69.22 E-value=2.5 Score=35.78 Aligned_cols=24 Identities=25% Similarity=0.277 Sum_probs=18.2
Q ss_pred hcCCCEEEEccCCChHhHHHHHHH
Q 010357 54 LSGRHVLVNAATGTGKTVAYLAPI 77 (512)
Q Consensus 54 ~~~~~~lv~~pTGsGKT~~~~~~~ 77 (512)
..+.-+.+.||+|||||..+-..+
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La 46 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALN 46 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHH
Confidence 356678899999999997765443
No 344
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=69.22 E-value=3.1 Score=40.16 Aligned_cols=22 Identities=27% Similarity=0.298 Sum_probs=17.8
Q ss_pred CCCEEEEccCCChHhHHHHHHH
Q 010357 56 GRHVLVNAATGTGKTVAYLAPI 77 (512)
Q Consensus 56 ~~~~lv~~pTGsGKT~~~~~~~ 77 (512)
.+++++.||+|+|||..+-..+
T Consensus 50 ~~~iLl~GppGtGKT~lar~lA 71 (444)
T 1g41_A 50 PKNILMIGPTGVGKTEIARRLA 71 (444)
T ss_dssp CCCEEEECCTTSSHHHHHHHHH
T ss_pred CceEEEEcCCCCCHHHHHHHHH
Confidence 3689999999999998765544
No 345
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=69.09 E-value=2.6 Score=37.88 Aligned_cols=57 Identities=19% Similarity=0.151 Sum_probs=34.1
Q ss_pred ccCCcccCCCCHHHHHHHHHhcCCCCCcHHHHHHHHHhh--cCCCEEEEccCCChHhHHHHHH
Q 010357 16 ASCSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIPVIL--SGRHVLVNAATGTGKTVAYLAP 76 (512)
Q Consensus 16 ~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~Q~~~~~~~~--~~~~~lv~~pTGsGKT~~~~~~ 76 (512)
+..+|+++.-.++....+.+.. . ... ...++..+- -.+.+++.||+|+|||..+-..
T Consensus 35 ~~~~~~~i~g~~~~~~~l~~l~-~--~~~-~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i 93 (278)
T 1iy2_A 35 PKVTFKDVAGAEEAKEELKEIV-E--FLK-NPSRFHEMGARIPKGVLLVGPPGVGKTHLARAV 93 (278)
T ss_dssp CCCCGGGSSSCHHHHHHHHHHH-H--HHH-CHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHH
T ss_pred CCCCHHHhCChHHHHHHHHHHH-H--HHH-CHHHHHHcCCCCCCeEEEECCCcChHHHHHHHH
Confidence 5567888877777777774421 1 111 112333221 1234899999999999765443
No 346
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=69.04 E-value=4 Score=33.81 Aligned_cols=22 Identities=14% Similarity=0.111 Sum_probs=17.3
Q ss_pred CCEEEEccCCChHhHHHHHHHH
Q 010357 57 RHVLVNAATGTGKTVAYLAPII 78 (512)
Q Consensus 57 ~~~lv~~pTGsGKT~~~~~~~~ 78 (512)
..+++.|++|||||.++-..+.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3588999999999987655443
No 347
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=68.86 E-value=3.5 Score=35.19 Aligned_cols=22 Identities=14% Similarity=0.092 Sum_probs=17.0
Q ss_pred CEEEEccCCChHhHHHHHHHHH
Q 010357 58 HVLVNAATGTGKTVAYLAPIIN 79 (512)
Q Consensus 58 ~~lv~~pTGsGKT~~~~~~~~~ 79 (512)
.+++.||+||||+..+...+..
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~ 23 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKE 23 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4688999999999877665543
No 348
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=68.56 E-value=3.5 Score=34.89 Aligned_cols=21 Identities=24% Similarity=0.283 Sum_probs=16.8
Q ss_pred CCEEEEccCCChHhHHHHHHH
Q 010357 57 RHVLVNAATGTGKTVAYLAPI 77 (512)
Q Consensus 57 ~~~lv~~pTGsGKT~~~~~~~ 77 (512)
..+++.|+.|||||..+-..+
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~ 39 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIA 39 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 468999999999997765543
No 349
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=68.42 E-value=4 Score=33.32 Aligned_cols=22 Identities=18% Similarity=0.134 Sum_probs=17.1
Q ss_pred CCEEEEccCCChHhHHHHHHHH
Q 010357 57 RHVLVNAATGTGKTVAYLAPII 78 (512)
Q Consensus 57 ~~~lv~~pTGsGKT~~~~~~~~ 78 (512)
+.+++.|++|||||.++-..+.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 3588999999999987655443
No 350
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=68.41 E-value=2.6 Score=42.75 Aligned_cols=16 Identities=31% Similarity=0.538 Sum_probs=14.5
Q ss_pred CEEEEccCCChHhHHH
Q 010357 58 HVLVNAATGTGKTVAY 73 (512)
Q Consensus 58 ~~lv~~pTGsGKT~~~ 73 (512)
++++.||+|+|||..+
T Consensus 329 ~vLL~GppGtGKT~LA 344 (595)
T 3f9v_A 329 HILIIGDPGTAKSQML 344 (595)
T ss_dssp CEEEEESSCCTHHHHH
T ss_pred ceEEECCCchHHHHHH
Confidence 8999999999999664
No 351
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=68.34 E-value=3.2 Score=35.85 Aligned_cols=23 Identities=30% Similarity=0.473 Sum_probs=17.2
Q ss_pred hhcCCCEEEEccCCChHhHHHHH
Q 010357 53 ILSGRHVLVNAATGTGKTVAYLA 75 (512)
Q Consensus 53 ~~~~~~~lv~~pTGsGKT~~~~~ 75 (512)
+-.|+-+++.||.|+|||...-.
T Consensus 13 ~~~G~ii~l~GpsGsGKSTLlk~ 35 (219)
T 1s96_A 13 MAQGTLYIVSAPSGAGKSSLIQA 35 (219)
T ss_dssp --CCCEEEEECCTTSCHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHH
Confidence 34677789999999999966443
No 352
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=68.20 E-value=3.8 Score=35.20 Aligned_cols=23 Identities=13% Similarity=0.088 Sum_probs=17.9
Q ss_pred CCCEEEEccCCChHhHHHHHHHH
Q 010357 56 GRHVLVNAATGTGKTVAYLAPII 78 (512)
Q Consensus 56 ~~~~lv~~pTGsGKT~~~~~~~~ 78 (512)
+..+++.|++|||||..+-..+.
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 34688999999999987655543
No 353
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=68.01 E-value=3.1 Score=35.21 Aligned_cols=23 Identities=17% Similarity=0.342 Sum_probs=17.9
Q ss_pred cCCCEEEEccCCChHhHHHHHHH
Q 010357 55 SGRHVLVNAATGTGKTVAYLAPI 77 (512)
Q Consensus 55 ~~~~~lv~~pTGsGKT~~~~~~~ 77 (512)
.+..+++.|+.|||||...-..+
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~ 25 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIM 25 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHH
Confidence 45668899999999997765443
No 354
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=67.89 E-value=3.2 Score=35.54 Aligned_cols=20 Identities=15% Similarity=0.212 Sum_probs=16.1
Q ss_pred CEEEEccCCChHhHHHHHHH
Q 010357 58 HVLVNAATGTGKTVAYLAPI 77 (512)
Q Consensus 58 ~~lv~~pTGsGKT~~~~~~~ 77 (512)
.+++.||.|||||..+-..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~ 21 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIV 21 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 47899999999998765543
No 355
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=67.85 E-value=3.5 Score=34.42 Aligned_cols=22 Identities=27% Similarity=0.235 Sum_probs=17.1
Q ss_pred CCCEEEEccCCChHhHHHHHHH
Q 010357 56 GRHVLVNAATGTGKTVAYLAPI 77 (512)
Q Consensus 56 ~~~~lv~~pTGsGKT~~~~~~~ 77 (512)
+..+++.|++|||||..+-..+
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~ 26 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALA 26 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 3457899999999998765544
No 356
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=67.75 E-value=5 Score=37.60 Aligned_cols=21 Identities=19% Similarity=0.260 Sum_probs=16.1
Q ss_pred CCEEEEccCCChHhHHHHHHH
Q 010357 57 RHVLVNAATGTGKTVAYLAPI 77 (512)
Q Consensus 57 ~~~lv~~pTGsGKT~~~~~~~ 77 (512)
.-+.+.||+|+|||......+
T Consensus 158 ~vi~lvG~nGsGKTTll~~La 178 (359)
T 2og2_A 158 AVIMIVGVNGGGKTTSLGKLA 178 (359)
T ss_dssp EEEEEECCTTSCHHHHHHHHH
T ss_pred eEEEEEcCCCChHHHHHHHHH
Confidence 346789999999997765544
No 357
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=67.75 E-value=24 Score=33.18 Aligned_cols=96 Identities=13% Similarity=0.088 Sum_probs=60.1
Q ss_pred CchHHHHH-HHHHhhhccccCceEEEEeecchhhhhHHHhhhhhcCCCCCCChhHHHhhhhccceeeecCCCCHHHHHHH
Q 010357 300 GSRLAVLL-SILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTT 378 (512)
Q Consensus 300 ~~k~~~l~-~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~l~g~~~~~~r~~~ 378 (512)
..|..... ..+..+.....+.+++|.++++..+..+++.+....... +..+..++|+.........
T Consensus 69 sGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~-------------~~~~~~~~g~~~~~~~~~~ 135 (400)
T 1s2m_A 69 TGKTAAFVIPTLEKVKPKLNKIQALIMVPTRELALQTSQVVRTLGKHC-------------GISCMVTTGGTNLRDDILR 135 (400)
T ss_dssp SCHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTT-------------TCCEEEECSSSCHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhccCCccEEEEcCCHHHHHHHHHHHHHHhccc-------------CceEEEEeCCcchHHHHHH
Confidence 45554433 333333222345689999999999999988887753211 5677788888765543322
Q ss_pred HHhhhcCCCcEEEeecc-----ccc-CCCCCCCcEEEEeC
Q 010357 379 FGAFKTEKKALLLSTDV-----AAR-GLDFPKVKCIIQYD 412 (512)
Q Consensus 379 ~~~f~~~~~~vLvaT~~-----~~~-Gldip~~~~VI~~~ 412 (512)
..+..+|+|+|.- +.. ..++.++++||.-.
T Consensus 136 ----~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDE 171 (400)
T 1s2m_A 136 ----LNETVHILVGTPGRVLDLASRKVADLSDCSLFIMDE 171 (400)
T ss_dssp ----TTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEES
T ss_pred ----hcCCCCEEEEchHHHHHHHHhCCcccccCCEEEEeC
Confidence 1356789999942 223 35667788877544
No 358
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=67.44 E-value=2.3 Score=37.01 Aligned_cols=23 Identities=22% Similarity=0.281 Sum_probs=14.0
Q ss_pred hhcCCCEEEEccCCChHhHHHHH
Q 010357 53 ILSGRHVLVNAATGTGKTVAYLA 75 (512)
Q Consensus 53 ~~~~~~~lv~~pTGsGKT~~~~~ 75 (512)
+..|+-+.+.||+|+|||...-+
T Consensus 24 v~~G~ii~l~Gp~GsGKSTl~~~ 46 (231)
T 3lnc_A 24 KSVGVILVLSSPSGCGKTTVANK 46 (231)
T ss_dssp EECCCEEEEECSCC----CHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHH
Confidence 34677788999999999966544
No 359
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=67.37 E-value=4.6 Score=35.44 Aligned_cols=23 Identities=22% Similarity=0.196 Sum_probs=18.0
Q ss_pred CCCEEEEccCCChHhHHHHHHHH
Q 010357 56 GRHVLVNAATGTGKTVAYLAPII 78 (512)
Q Consensus 56 ~~~~lv~~pTGsGKT~~~~~~~~ 78 (512)
...+++.||.|||||..+-..+.
T Consensus 29 ~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 29 DGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 44689999999999987765543
No 360
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=67.36 E-value=3.2 Score=37.35 Aligned_cols=28 Identities=18% Similarity=0.243 Sum_probs=22.3
Q ss_pred HhhcCCCEEEEccCCChHhHHHHHHHHH
Q 010357 52 VILSGRHVLVNAATGTGKTVAYLAPIIN 79 (512)
Q Consensus 52 ~~~~~~~~lv~~pTGsGKT~~~~~~~~~ 79 (512)
.+..|.-+++.||+|+|||..+...+..
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~ 53 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQ 53 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 3557788899999999999887666653
No 361
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=67.32 E-value=4.2 Score=35.02 Aligned_cols=23 Identities=17% Similarity=0.157 Sum_probs=18.1
Q ss_pred CCCEEEEccCCChHhHHHHHHHH
Q 010357 56 GRHVLVNAATGTGKTVAYLAPII 78 (512)
Q Consensus 56 ~~~~lv~~pTGsGKT~~~~~~~~ 78 (512)
...+++.|++|||||..+-..+.
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35689999999999987765543
No 362
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=67.32 E-value=5.3 Score=36.94 Aligned_cols=22 Identities=18% Similarity=0.194 Sum_probs=16.6
Q ss_pred CCCEEEEccCCChHhHHHHHHH
Q 010357 56 GRHVLVNAATGTGKTVAYLAPI 77 (512)
Q Consensus 56 ~~~~lv~~pTGsGKT~~~~~~~ 77 (512)
+.-+.+.||+|+|||......+
T Consensus 129 g~vi~lvG~nGaGKTTll~~La 150 (328)
T 3e70_C 129 PYVIMFVGFNGSGKTTTIAKLA 150 (328)
T ss_dssp SEEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 4456889999999997655444
No 363
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=67.29 E-value=2.6 Score=38.66 Aligned_cols=26 Identities=23% Similarity=0.119 Sum_probs=20.2
Q ss_pred hcCCCEEEEccCCChHhHHHHHHHHH
Q 010357 54 LSGRHVLVNAATGTGKTVAYLAPIIN 79 (512)
Q Consensus 54 ~~~~~~lv~~pTGsGKT~~~~~~~~~ 79 (512)
..++.+++.||+|+|||..+...+.+
T Consensus 121 ~~gsviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 121 YASGMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp EESEEEEEECSCSSSHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHh
Confidence 34556799999999999887766554
No 364
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=67.20 E-value=3.6 Score=34.78 Aligned_cols=22 Identities=23% Similarity=0.231 Sum_probs=17.2
Q ss_pred CCEEEEccCCChHhHHHHHHHH
Q 010357 57 RHVLVNAATGTGKTVAYLAPII 78 (512)
Q Consensus 57 ~~~lv~~pTGsGKT~~~~~~~~ 78 (512)
..+++.|++|||||..+-..+.
T Consensus 21 ~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 21 MRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4588999999999987655443
No 365
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=67.20 E-value=4.9 Score=34.26 Aligned_cols=34 Identities=12% Similarity=0.127 Sum_probs=22.8
Q ss_pred cHHHHHHHHHhhcCCCEEEEccCCChHhHHHHHHH
Q 010357 43 TKVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPI 77 (512)
Q Consensus 43 ~~~Q~~~~~~~~~~~~~lv~~pTGsGKT~~~~~~~ 77 (512)
++.++.. ..+..+..+++.|++|||||..+-...
T Consensus 13 ~~~~r~~-~~~~~~~~i~~~G~~GsGKsT~~~~l~ 46 (211)
T 1m7g_A 13 TRSERTE-LRNQRGLTIWLTGLSASGKSTLAVELE 46 (211)
T ss_dssp CHHHHHH-HHTSSCEEEEEECSTTSSHHHHHHHHH
T ss_pred CHHHhhc-ccCCCCCEEEEECCCCCCHHHHHHHHH
Confidence 3444444 234466678899999999997765443
No 366
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=67.01 E-value=3.9 Score=35.19 Aligned_cols=25 Identities=16% Similarity=0.275 Sum_probs=18.3
Q ss_pred cCCCEEEEccCCChHhHHHHHHHHH
Q 010357 55 SGRHVLVNAATGTGKTVAYLAPIIN 79 (512)
Q Consensus 55 ~~~~~lv~~pTGsGKT~~~~~~~~~ 79 (512)
..+-+++.||+||||+..+-..+..
T Consensus 28 k~kiI~llGpPGsGKgTqa~~L~~~ 52 (217)
T 3umf_A 28 KAKVIFVLGGPGSGKGTQCEKLVQK 52 (217)
T ss_dssp SCEEEEEECCTTCCHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3345778999999998877655443
No 367
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=66.59 E-value=4.2 Score=35.36 Aligned_cols=25 Identities=20% Similarity=0.219 Sum_probs=19.1
Q ss_pred cCCCEEEEccCCChHhHHHHHHHHH
Q 010357 55 SGRHVLVNAATGTGKTVAYLAPIIN 79 (512)
Q Consensus 55 ~~~~~lv~~pTGsGKT~~~~~~~~~ 79 (512)
.+..+++.|++|||||..+-..+..
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~ 39 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKN 39 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3457899999999999877655443
No 368
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=66.43 E-value=5.6 Score=36.19 Aligned_cols=23 Identities=22% Similarity=0.147 Sum_probs=17.2
Q ss_pred CEEEEccCCChHhHHHHHHHHHH
Q 010357 58 HVLVNAATGTGKTVAYLAPIINH 80 (512)
Q Consensus 58 ~~lv~~pTGsGKT~~~~~~~~~~ 80 (512)
-+.+.+++|+|||..+...+...
T Consensus 100 vi~i~G~~G~GKTT~~~~la~~~ 122 (297)
T 1j8m_F 100 VIMLVGVQGTGKTTTAGKLAYFY 122 (297)
T ss_dssp EEEEECSSCSSTTHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 45678999999998776655444
No 369
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=66.42 E-value=4.9 Score=40.85 Aligned_cols=26 Identities=35% Similarity=0.365 Sum_probs=20.6
Q ss_pred HHhhcCCCEEEEccCCChHhHHHHHH
Q 010357 51 PVILSGRHVLVNAATGTGKTVAYLAP 76 (512)
Q Consensus 51 ~~~~~~~~~lv~~pTGsGKT~~~~~~ 76 (512)
..+..++.+++.||+|+|||..+-..
T Consensus 55 ~~i~~g~~vll~Gp~GtGKTtlar~i 80 (604)
T 3k1j_A 55 TAANQKRHVLLIGEPGTGKSMLGQAM 80 (604)
T ss_dssp HHHHTTCCEEEECCTTSSHHHHHHHH
T ss_pred ccccCCCEEEEEeCCCCCHHHHHHHH
Confidence 34557889999999999999776443
No 370
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=66.38 E-value=3.4 Score=37.43 Aligned_cols=20 Identities=30% Similarity=0.331 Sum_probs=15.8
Q ss_pred CCEEEEccCCChHhHHHHHH
Q 010357 57 RHVLVNAATGTGKTVAYLAP 76 (512)
Q Consensus 57 ~~~lv~~pTGsGKT~~~~~~ 76 (512)
.-++++||+|||||..+-..
T Consensus 34 ~livl~G~sGsGKSTla~~L 53 (287)
T 1gvn_B 34 TAFLLGGQPGSGKTSLRSAI 53 (287)
T ss_dssp EEEEEECCTTSCTHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 34789999999999776544
No 371
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=66.35 E-value=3.8 Score=34.11 Aligned_cols=20 Identities=20% Similarity=0.227 Sum_probs=15.8
Q ss_pred CEEEEccCCChHhHHHHHHH
Q 010357 58 HVLVNAATGTGKTVAYLAPI 77 (512)
Q Consensus 58 ~~lv~~pTGsGKT~~~~~~~ 77 (512)
.+++.|+.|||||..+-..+
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~ 22 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVK 22 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 47899999999997765544
No 372
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=66.28 E-value=3.5 Score=34.40 Aligned_cols=19 Identities=16% Similarity=0.314 Sum_probs=15.2
Q ss_pred CEEEEccCCChHhHHHHHH
Q 010357 58 HVLVNAATGTGKTVAYLAP 76 (512)
Q Consensus 58 ~~lv~~pTGsGKT~~~~~~ 76 (512)
-+++.||+|+|||..+-..
T Consensus 4 ii~l~G~~GaGKSTl~~~L 22 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRL 22 (189)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHH
Confidence 4678999999999765544
No 373
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=66.27 E-value=2.9 Score=34.75 Aligned_cols=45 Identities=18% Similarity=0.180 Sum_probs=25.9
Q ss_pred EEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHH
Q 010357 59 VLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTRELCLQVYEILHKL 116 (512)
Q Consensus 59 ~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 116 (512)
++|.|++|||||.-+...+ . . +..++|+++....-.++.+.+..+
T Consensus 2 ilV~Gg~~SGKS~~A~~la-----~-------~-~~~~~yiaT~~~~d~e~~~rI~~h 46 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALI-----G-------D-APQVLYIATSQILDDEMAARIQHH 46 (180)
T ss_dssp EEEEECTTSSHHHHHHHHH-----C-------S-CSSEEEEECCCC------CHHHHH
T ss_pred EEEECCCCCcHHHHHHHHH-----h-------c-CCCeEEEecCCCCCHHHHHHHHHH
Confidence 6899999999996654432 1 1 234788888665544555555444
No 374
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=66.26 E-value=2.5 Score=36.53 Aligned_cols=24 Identities=21% Similarity=0.109 Sum_probs=18.5
Q ss_pred cCCCEEEEccCCChHhHHHHHHHH
Q 010357 55 SGRHVLVNAATGTGKTVAYLAPII 78 (512)
Q Consensus 55 ~~~~~lv~~pTGsGKT~~~~~~~~ 78 (512)
.|.-+.+.+|+|+|||..+...+.
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g 47 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAV 47 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 566788999999999977655443
No 375
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=66.20 E-value=5.9 Score=35.97 Aligned_cols=25 Identities=16% Similarity=0.122 Sum_probs=17.7
Q ss_pred CCCEEEEccCCChHhHHHHHHHHHH
Q 010357 56 GRHVLVNAATGTGKTVAYLAPIINH 80 (512)
Q Consensus 56 ~~~~lv~~pTGsGKT~~~~~~~~~~ 80 (512)
++-+.+.+++|+|||..+...+...
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~la~~~ 122 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAKLALYY 122 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3456678999999997766555443
No 376
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=66.10 E-value=3.4 Score=37.68 Aligned_cols=21 Identities=14% Similarity=0.145 Sum_probs=17.2
Q ss_pred cCCCEEEEccCCChHhHHHHH
Q 010357 55 SGRHVLVNAATGTGKTVAYLA 75 (512)
Q Consensus 55 ~~~~~lv~~pTGsGKT~~~~~ 75 (512)
.|+.+.+.||+|+|||...-+
T Consensus 125 ~Ge~vaIvGpsGsGKSTLl~l 145 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSMLCNS 145 (305)
T ss_dssp TCSEEEEECSSSSSHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHH
Confidence 677889999999999965444
No 377
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=65.93 E-value=3.7 Score=40.16 Aligned_cols=58 Identities=24% Similarity=0.318 Sum_probs=35.0
Q ss_pred ccCCcccCCCCHHHHHHHHHhcCC-CCCcHHHHHHHHHhh--cCCCEEEEccCCChHhHHHHHHHH
Q 010357 16 ASCSFSSLGLHSTLCDQLRERLGF-EAPTKVQAQAIPVIL--SGRHVLVNAATGTGKTVAYLAPII 78 (512)
Q Consensus 16 ~~~~~~~~~l~~~~~~~l~~~~~~-~~~~~~Q~~~~~~~~--~~~~~lv~~pTGsGKT~~~~~~~~ 78 (512)
...+|+++.-.++..+.+.+...+ ..+ ..+..+- -.+.+++.||+|+|||..+-..+-
T Consensus 11 ~~~~f~di~G~~~~~~~l~e~v~~l~~~-----~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~ 71 (476)
T 2ce7_A 11 KRVTFKDVGGAEEAIEELKEVVEFLKDP-----SKFNRIGARMPKGILLVGPPGTGKTLLARAVAG 71 (476)
T ss_dssp CCCCGGGCCSCHHHHHHHHHHHHHHHCT-----HHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCHHHhCCcHHHHHHHHHHHHHhhCh-----HHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHH
Confidence 346788887777777777543211 111 1222211 235699999999999987655443
No 378
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=65.92 E-value=4.1 Score=32.63 Aligned_cols=16 Identities=25% Similarity=0.374 Sum_probs=13.5
Q ss_pred CEEEEccCCChHhHHH
Q 010357 58 HVLVNAATGTGKTVAY 73 (512)
Q Consensus 58 ~~lv~~pTGsGKT~~~ 73 (512)
-.++.||+|+|||...
T Consensus 25 ~~~I~G~NGsGKStil 40 (149)
T 1f2t_A 25 INLIIGQNGSGKSSLL 40 (149)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 4688999999999764
No 379
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=65.78 E-value=4.1 Score=33.95 Aligned_cols=20 Identities=25% Similarity=0.335 Sum_probs=16.2
Q ss_pred CEEEEccCCChHhHHHHHHH
Q 010357 58 HVLVNAATGTGKTVAYLAPI 77 (512)
Q Consensus 58 ~~lv~~pTGsGKT~~~~~~~ 77 (512)
.+++.|++|||||.++-..+
T Consensus 8 ~I~l~G~~GsGKsT~~~~L~ 27 (194)
T 1qf9_A 8 VVFVLGGPGSGKGTQCANIV 27 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 47899999999998765544
No 380
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=65.71 E-value=4.1 Score=34.22 Aligned_cols=24 Identities=13% Similarity=0.225 Sum_probs=18.3
Q ss_pred cCCCEEEEccCCChHhHHHHHHHH
Q 010357 55 SGRHVLVNAATGTGKTVAYLAPII 78 (512)
Q Consensus 55 ~~~~~lv~~pTGsGKT~~~~~~~~ 78 (512)
.+..+++.|++|||||..+-..+.
T Consensus 11 ~~~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 11 KCKIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp HSCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 345688999999999987655443
No 381
>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa}
Probab=65.65 E-value=7.3 Score=42.02 Aligned_cols=64 Identities=13% Similarity=0.197 Sum_probs=42.1
Q ss_pred cCccCCcccCC-C-CHHHHHHHHHhcCCCC----CcHHHHHHHHHhh---cCCCEEEEccCCChHhHHHHHHHH
Q 010357 14 IFASCSFSSLG-L-HSTLCDQLRERLGFEA----PTKVQAQAIPVIL---SGRHVLVNAATGTGKTVAYLAPII 78 (512)
Q Consensus 14 ~~~~~~~~~~~-l-~~~~~~~l~~~~~~~~----~~~~Q~~~~~~~~---~~~~~lv~~pTGsGKT~~~~~~~~ 78 (512)
+.+.++|..++ + +++.....+.. ...+ .+.+=..|+..++ .++.+|+.|.+|+|||.+.-..+-
T Consensus 94 LIaVNPyk~lp~iY~~~~~~~Y~g~-~~~~lpPHIfaiA~~AY~~M~~~~~nQsIiiSGESGAGKTestK~im~ 166 (1052)
T 4anj_A 94 LIAVNPYFDIPKIYSSETIKSYQGK-SLGTMPPHVFAIADKAFRDMKVLKLSQSIIVSGESGAGKTENTKFVLR 166 (1052)
T ss_dssp EEEECCSSCCTTTTSHHHHHHHTTC-CBTTBCSCHHHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCccccCCHHHHHHhcCC-CCCCCCCcHHHHHHHHHHHHHHhCCCceEEEecCCCCCHHHHHHHHHH
Confidence 36788999885 5 56666666432 2222 3444556666555 345799999999999988755443
No 382
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=65.54 E-value=4 Score=35.35 Aligned_cols=22 Identities=18% Similarity=0.137 Sum_probs=17.3
Q ss_pred CCCEEEEccCCChHhHHHHHHH
Q 010357 56 GRHVLVNAATGTGKTVAYLAPI 77 (512)
Q Consensus 56 ~~~~lv~~pTGsGKT~~~~~~~ 77 (512)
...+++.|++|||||..+-..+
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La 28 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRIT 28 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 3568999999999998765443
No 383
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=65.49 E-value=3.8 Score=34.03 Aligned_cols=18 Identities=22% Similarity=0.460 Sum_probs=14.3
Q ss_pred CEEEEccCCChHhHHHHH
Q 010357 58 HVLVNAATGTGKTVAYLA 75 (512)
Q Consensus 58 ~~lv~~pTGsGKT~~~~~ 75 (512)
.+.+.||.|+|||..+-+
T Consensus 2 ~i~l~G~nGsGKTTLl~~ 19 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKK 19 (178)
T ss_dssp EEEEECCTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 467899999999966433
No 384
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=65.34 E-value=3.9 Score=34.73 Aligned_cols=24 Identities=17% Similarity=0.151 Sum_probs=18.2
Q ss_pred cCCCEEEEccCCChHhHHHHHHHH
Q 010357 55 SGRHVLVNAATGTGKTVAYLAPII 78 (512)
Q Consensus 55 ~~~~~lv~~pTGsGKT~~~~~~~~ 78 (512)
.+..+++.|+.|||||..+-..+.
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHH
Confidence 345678999999999987655443
No 385
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=65.29 E-value=3.1 Score=35.52 Aligned_cols=20 Identities=25% Similarity=0.338 Sum_probs=15.4
Q ss_pred cCCCEEEEccCCChHhHHHH
Q 010357 55 SGRHVLVNAATGTGKTVAYL 74 (512)
Q Consensus 55 ~~~~~lv~~pTGsGKT~~~~ 74 (512)
.|.-+.+.||+|||||..+-
T Consensus 21 ~g~~v~I~G~sGsGKSTl~~ 40 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTLSN 40 (208)
T ss_dssp SCEEEEEECCTTSCTHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHH
Confidence 45567799999999996543
No 386
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=65.18 E-value=51 Score=26.29 Aligned_cols=74 Identities=18% Similarity=0.144 Sum_probs=48.1
Q ss_pred CceEEEEcCcHHHHHHHHHHHHHHHhhcCCcceEEEeCCCchHHHH---HHHc-CCCCEEEeCChHHHHHHhhcCCCcCC
Q 010357 93 GTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEK---ARLR-KGISILVATPGRLLDHLKHTSSFLHT 168 (512)
Q Consensus 93 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~---~~~~-~~~~Iiv~Tp~~l~~~l~~~~~~~~~ 168 (512)
+.++||.++++.-+..+++.+... + ..+..++++....+.. ..+. +..+|+|+|. .+. ..+++.
T Consensus 35 ~~~~lVF~~~~~~~~~l~~~L~~~----~-~~~~~~hg~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~~--~Gld~~ 102 (163)
T 2hjv_A 35 PDSCIIFCRTKEHVNQLTDELDDL----G-YPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVATD-----VAA--RGIDIE 102 (163)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHHT----T-CCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECG-----GGT--TTCCCS
T ss_pred CCcEEEEECCHHHHHHHHHHHHHc----C-CcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEECC-----hhh--cCCchh
Confidence 456999999999999888888764 2 3455566665544332 2333 3478999992 222 455566
Q ss_pred ceeEEEEcch
Q 010357 169 NLRWIIFDEA 178 (512)
Q Consensus 169 ~~~~lV~DEa 178 (512)
.+++||.-..
T Consensus 103 ~~~~Vi~~~~ 112 (163)
T 2hjv_A 103 NISLVINYDL 112 (163)
T ss_dssp CCSEEEESSC
T ss_pred cCCEEEEeCC
Confidence 7788776443
No 387
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=64.69 E-value=25 Score=32.41 Aligned_cols=97 Identities=11% Similarity=0.084 Sum_probs=63.5
Q ss_pred cCCchHHHHHHHHHhhhccccCceEEEEeecchhhhhHHHhhhhhcCCCCCCChhHHHhhhhccceeeecCCCCHHHHHH
Q 010357 298 PCGSRLAVLLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRT 377 (512)
Q Consensus 298 ~~~~k~~~l~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~l~g~~~~~~r~~ 377 (512)
....|.......+........+.+++|.++++..+..+++.+...... .+..+..++|+........
T Consensus 53 TGsGKT~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~-------------~~~~v~~~~~~~~~~~~~~ 119 (367)
T 1hv8_A 53 TGSGKTASFAIPLIELVNENNGIEAIILTPTRELAIQVADEIESLKGN-------------KNLKIAKIYGGKAIYPQIK 119 (367)
T ss_dssp SSSSHHHHHHHHHHHHSCSSSSCCEEEECSCHHHHHHHHHHHHHHHCS-------------SCCCEEEECTTSCHHHHHH
T ss_pred CCChHHHHHHHHHHHHhcccCCCcEEEEcCCHHHHHHHHHHHHHHhCC-------------CCceEEEEECCcchHHHHh
Confidence 345676655555555444445679999999999999999988876321 1556777888877655443
Q ss_pred HHHhhhcCCCcEEEeecc-c----c-cCCCCCCCcEEEEeC
Q 010357 378 TFGAFKTEKKALLLSTDV-A----A-RGLDFPKVKCIIQYD 412 (512)
Q Consensus 378 ~~~~f~~~~~~vLvaT~~-~----~-~Gldip~~~~VI~~~ 412 (512)
... ..+|+|+|.- + . ..+++..+++||.-.
T Consensus 120 ~~~-----~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDE 155 (367)
T 1hv8_A 120 ALK-----NANIVVGTPGRILDHINRGTLNLKNVKYFILDE 155 (367)
T ss_dssp HHH-----TCSEEEECHHHHHHHHHTTCSCTTSCCEEEEET
T ss_pred hcC-----CCCEEEecHHHHHHHHHcCCcccccCCEEEEeC
Confidence 332 4689999953 1 1 235566778777433
No 388
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=64.63 E-value=17 Score=34.12 Aligned_cols=94 Identities=10% Similarity=0.113 Sum_probs=60.5
Q ss_pred chHHH-HHHHHHhhhccccCceEEEEeecchhhhhHHHhhhhhcCCCCCCChhHHHhhhhccceeeecCCCCHHHHHHHH
Q 010357 301 SRLAV-LLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTF 379 (512)
Q Consensus 301 ~k~~~-l~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~l~g~~~~~~r~~~~ 379 (512)
.|... +...+..+.....+.+++|.++++..+..+++.+...... .+..+..++|+.+..+....+
T Consensus 70 GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~-------------~~~~~~~~~g~~~~~~~~~~~ 136 (394)
T 1fuu_A 70 GKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFH-------------MDIKVHACIGGTSFVEDAEGL 136 (394)
T ss_dssp HHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTT-------------SCCCEEEECSSCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhccCCCCCEEEEcCCHHHHHHHHHHHHHHhcc-------------CCeeEEEEeCCCchHHHHhhc
Confidence 45543 3334444333335679999999999999988888765321 156788889998876655544
Q ss_pred HhhhcCCCcEEEeecc-----c-ccCCCCCCCcEEEEeC
Q 010357 380 GAFKTEKKALLLSTDV-----A-ARGLDFPKVKCIIQYD 412 (512)
Q Consensus 380 ~~f~~~~~~vLvaT~~-----~-~~Gldip~~~~VI~~~ 412 (512)
. ..+|+|+|.- + ...++...+++||.-.
T Consensus 137 ~-----~~~i~v~T~~~l~~~~~~~~~~~~~~~~vIiDE 170 (394)
T 1fuu_A 137 R-----DAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDE 170 (394)
T ss_dssp H-----HCSEEEECHHHHHHHHHTTSSCCTTCCEEEEET
T ss_pred C-----CCCEEEECHHHHHHHHHhCCcchhhCcEEEEEC
Confidence 3 3579999942 1 1234556677777533
No 389
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=64.50 E-value=17 Score=35.03 Aligned_cols=76 Identities=11% Similarity=0.116 Sum_probs=54.1
Q ss_pred CceEEEEeecchhhhhHHHhhhhhcCCCCCCChhHHHhhhhccceeeecCCCCHHHHHHHHHhhhcCCCcEEEeecc---
Q 010357 319 SQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDV--- 395 (512)
Q Consensus 319 ~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~l~g~~~~~~r~~~~~~f~~~~~~vLvaT~~--- 395 (512)
+.++||.+++++.+..+++.+....... +..+..++|+.+...+...+. ...+|+|+|.-
T Consensus 129 ~~~~lil~PtreLa~Q~~~~~~~~~~~~-------------~~~~~~~~gg~~~~~~~~~l~----~~~~Ivv~Tp~~l~ 191 (434)
T 2db3_A 129 RPQVVIVSPTRELAIQIFNEARKFAFES-------------YLKIGIVYGGTSFRHQNECIT----RGCHVVIATPGRLL 191 (434)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHTTTS-------------SCCCCEECTTSCHHHHHHHHT----TCCSEEEECHHHHH
T ss_pred CccEEEEecCHHHHHHHHHHHHHHhccC-------------CcEEEEEECCCCHHHHHHHhh----cCCCEEEEChHHHH
Confidence 4589999999999999999888764221 567788899988766544332 35789999952
Q ss_pred --ccc-CCCCCCCcEEEEe
Q 010357 396 --AAR-GLDFPKVKCIIQY 411 (512)
Q Consensus 396 --~~~-Gldip~~~~VI~~ 411 (512)
+.. .+++..++++|.-
T Consensus 192 ~~l~~~~~~l~~~~~lVlD 210 (434)
T 2db3_A 192 DFVDRTFITFEDTRFVVLD 210 (434)
T ss_dssp HHHHTTSCCCTTCCEEEEE
T ss_pred HHHHhCCcccccCCeEEEc
Confidence 223 3566778887743
No 390
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=64.34 E-value=4.8 Score=33.78 Aligned_cols=22 Identities=32% Similarity=0.501 Sum_probs=16.7
Q ss_pred CCCEEEEccCCChHhHHHHHHH
Q 010357 56 GRHVLVNAATGTGKTVAYLAPI 77 (512)
Q Consensus 56 ~~~~lv~~pTGsGKT~~~~~~~ 77 (512)
|..+.+.+|+|+|||...-..+
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~ 22 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKAS 22 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHH
T ss_pred CCEEEEECCCCChHHHHHHHHH
Confidence 3467899999999997655433
No 391
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=64.05 E-value=3.7 Score=33.89 Aligned_cols=23 Identities=30% Similarity=0.401 Sum_probs=17.3
Q ss_pred cCCCEEEEccCCChHhHHHHHHH
Q 010357 55 SGRHVLVNAATGTGKTVAYLAPI 77 (512)
Q Consensus 55 ~~~~~lv~~pTGsGKT~~~~~~~ 77 (512)
.|..+++.|+.|||||..+-...
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~ 26 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALE 26 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 35567899999999997754443
No 392
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=63.95 E-value=4.3 Score=34.73 Aligned_cols=21 Identities=14% Similarity=0.085 Sum_probs=16.6
Q ss_pred CEEEEccCCChHhHHHHHHHH
Q 010357 58 HVLVNAATGTGKTVAYLAPII 78 (512)
Q Consensus 58 ~~lv~~pTGsGKT~~~~~~~~ 78 (512)
.+++.|++|||||..+-..+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999987655543
No 393
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=63.88 E-value=1.9 Score=36.70 Aligned_cols=21 Identities=19% Similarity=0.126 Sum_probs=16.2
Q ss_pred cCCCEEEEccCCChHhHHHHH
Q 010357 55 SGRHVLVNAATGTGKTVAYLA 75 (512)
Q Consensus 55 ~~~~~lv~~pTGsGKT~~~~~ 75 (512)
.+.-+.+.|++|||||..+-.
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~ 40 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKN 40 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHH
Confidence 455678999999999976543
No 394
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=63.83 E-value=57 Score=26.37 Aligned_cols=71 Identities=11% Similarity=0.038 Sum_probs=47.3
Q ss_pred CceEEEEcCcHHHHHHHHHHHHHHHhhcCCcceEEEeCCCchHHHH---HHHc-CCCCEEEeCChHHHHHHhhcCCCcCC
Q 010357 93 GTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEK---ARLR-KGISILVATPGRLLDHLKHTSSFLHT 168 (512)
Q Consensus 93 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~---~~~~-~~~~Iiv~Tp~~l~~~l~~~~~~~~~ 168 (512)
+.++||.++++.-+..++..+... + ..+..+.++....... ..+. +..+|+|+|. .+ ...+++.
T Consensus 34 ~~~~lVF~~~~~~~~~l~~~L~~~----~-~~~~~~~g~~~~~~R~~~~~~f~~g~~~vLvaT~-----~~--~~Gid~~ 101 (175)
T 2rb4_A 34 IGQAIIFCQTRRNAKWLTVEMIQD----G-HQVSLLSGELTVEQRASIIQRFRDGKEKVLITTN-----VC--ARGIDVK 101 (175)
T ss_dssp CSEEEEECSCHHHHHHHHHHHHTT----T-CCEEEECSSCCHHHHHHHHHHHHTTSCSEEEECC-----SC--CTTTCCT
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc----C-CcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEec-----ch--hcCCCcc
Confidence 567999999999998888877664 2 3455666665544332 2333 3589999993 11 2455666
Q ss_pred ceeEEEE
Q 010357 169 NLRWIIF 175 (512)
Q Consensus 169 ~~~~lV~ 175 (512)
.+++||.
T Consensus 102 ~~~~Vi~ 108 (175)
T 2rb4_A 102 QVTIVVN 108 (175)
T ss_dssp TEEEEEE
T ss_pred cCCEEEE
Confidence 7888884
No 395
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=63.83 E-value=8.3 Score=34.17 Aligned_cols=21 Identities=14% Similarity=0.195 Sum_probs=16.6
Q ss_pred CCEEEEccCCChHhHHHHHHH
Q 010357 57 RHVLVNAATGTGKTVAYLAPI 77 (512)
Q Consensus 57 ~~~lv~~pTGsGKT~~~~~~~ 77 (512)
..+++.|++|||||..+-...
T Consensus 5 ~lIvl~G~pGSGKSTla~~La 25 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLA 25 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHH
Confidence 357899999999998765544
No 396
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=63.81 E-value=4.8 Score=34.66 Aligned_cols=21 Identities=19% Similarity=0.284 Sum_probs=16.5
Q ss_pred CCEEEEccCCChHhHHHHHHH
Q 010357 57 RHVLVNAATGTGKTVAYLAPI 77 (512)
Q Consensus 57 ~~~lv~~pTGsGKT~~~~~~~ 77 (512)
..+.+.||+|||||..+-+.+
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~ 26 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMA 26 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 457899999999997765544
No 397
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=63.77 E-value=7.8 Score=32.69 Aligned_cols=20 Identities=15% Similarity=0.056 Sum_probs=15.4
Q ss_pred CCEEEEccCCChHhHHHHHH
Q 010357 57 RHVLVNAATGTGKTVAYLAP 76 (512)
Q Consensus 57 ~~~lv~~pTGsGKT~~~~~~ 76 (512)
.-+.+.|++|||||..+-..
T Consensus 23 ~~i~i~G~~GsGKstl~~~l 42 (201)
T 1rz3_A 23 LVLGIDGLSRSGKTTLANQL 42 (201)
T ss_dssp EEEEEEECTTSSHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 34678999999999765443
No 398
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=63.56 E-value=4.9 Score=34.46 Aligned_cols=23 Identities=17% Similarity=0.169 Sum_probs=17.7
Q ss_pred CCCEEEEccCCChHhHHHHHHHH
Q 010357 56 GRHVLVNAATGTGKTVAYLAPII 78 (512)
Q Consensus 56 ~~~~lv~~pTGsGKT~~~~~~~~ 78 (512)
+..+++.|++|||||..+-..+.
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 34688999999999987655543
No 399
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=63.29 E-value=63 Score=26.71 Aligned_cols=72 Identities=15% Similarity=0.160 Sum_probs=47.0
Q ss_pred CceEEEEcCcHHHHHHHHHHHHHHHhhcCCcceEEEeCCCchHHHH---HHH-cCCCCEEEeCChHHHHHHhhcCCCcCC
Q 010357 93 GTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEK---ARL-RKGISILVATPGRLLDHLKHTSSFLHT 168 (512)
Q Consensus 93 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~---~~~-~~~~~Iiv~Tp~~l~~~l~~~~~~~~~ 168 (512)
+.++||.++++.-+..+++.+... + .....+.++....... ..+ .+..+|+|+| +.+. ..+++.
T Consensus 54 ~~~~lVF~~~~~~~~~l~~~L~~~----g-~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT-----~~~~--~Gldi~ 121 (191)
T 2p6n_A 54 PPPVLIFAEKKADVDAIHEYLLLK----G-VEAVAIHGGKDQEERTKAIEAFREGKKDVLVAT-----DVAS--KGLDFP 121 (191)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHH----T-CCEEEECTTSCHHHHHHHHHHHHHTSCSEEEEC-----HHHH--TTCCCC
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc----C-CcEEEEeCCCCHHHHHHHHHHHhcCCCEEEEEc-----Cchh--cCCCcc
Confidence 446999999999999988888765 2 3445566665544332 222 2458999999 2222 345566
Q ss_pred ceeEEEEc
Q 010357 169 NLRWIIFD 176 (512)
Q Consensus 169 ~~~~lV~D 176 (512)
.+++||.=
T Consensus 122 ~v~~VI~~ 129 (191)
T 2p6n_A 122 AIQHVINY 129 (191)
T ss_dssp CCSEEEES
T ss_pred cCCEEEEe
Confidence 77777763
No 400
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=63.14 E-value=5.3 Score=32.39 Aligned_cols=21 Identities=10% Similarity=-0.039 Sum_probs=16.4
Q ss_pred CEEEEccCCChHhHHHHHHHH
Q 010357 58 HVLVNAATGTGKTVAYLAPII 78 (512)
Q Consensus 58 ~~lv~~pTGsGKT~~~~~~~~ 78 (512)
.+++.|+.|||||..+-....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 478999999999987655443
No 401
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=63.13 E-value=6.7 Score=37.69 Aligned_cols=23 Identities=17% Similarity=0.143 Sum_probs=17.3
Q ss_pred CEEEEccCCChHhHHHHHHHHHH
Q 010357 58 HVLVNAATGTGKTVAYLAPIINH 80 (512)
Q Consensus 58 ~~lv~~pTGsGKT~~~~~~~~~~ 80 (512)
-+.+.+++|+|||......+...
T Consensus 100 vi~i~G~~GsGKTT~~~~LA~~l 122 (425)
T 2ffh_A 100 LWFLVGLQGSGKTTTAAKLALYY 122 (425)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 46678999999998776655444
No 402
>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter domain, contractIle protein; HET: ADP; 3.00A {Dictyostelium discoideum} SCOP: c.37.1.9
Probab=63.08 E-value=6.8 Score=40.25 Aligned_cols=64 Identities=16% Similarity=0.173 Sum_probs=39.9
Q ss_pred cCccCCcccCCCC-HHHHHHHHHhcCCC----CCcHHHHHHHHHhh---cCCCEEEEccCCChHhHHHHHHHH
Q 010357 14 IFASCSFSSLGLH-STLCDQLRERLGFE----APTKVQAQAIPVIL---SGRHVLVNAATGTGKTVAYLAPII 78 (512)
Q Consensus 14 ~~~~~~~~~~~l~-~~~~~~l~~~~~~~----~~~~~Q~~~~~~~~---~~~~~lv~~pTGsGKT~~~~~~~~ 78 (512)
+.+.++|..+++. ++.....+.. ... +.+.+=..|+..+. +++.+|+.|.+|+|||.+.=..+-
T Consensus 45 LiavNPyk~l~iY~~~~~~~Y~g~-~~~~~pPHifaiA~~Ay~~m~~~~~nQsIiisGESGAGKTe~tK~i~~ 116 (697)
T 1lkx_A 45 VISTNPFKNLNIYKESDIKAYNGR-YKYEMPPHMYALANDAYRSMRQSQENQCVIISGESGAGKTEASKKIMQ 116 (697)
T ss_dssp EEEECCSSCCSCCSHHHHHHHSSC-CGGGSCCCHHHHHHHHHHHHHHHCCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEcCCcCCCCCCHHHHHHHhCC-CCCCCCchHHHHHHHHHHHHHhcCCCcEEEecCCCCCCchhhHHHHHH
Confidence 3677899988875 4444444322 221 22334445665554 345689999999999988655443
No 403
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=63.07 E-value=34 Score=32.27 Aligned_cols=94 Identities=10% Similarity=0.056 Sum_probs=60.2
Q ss_pred CchHHHHHHHHHhhhc-cccCceEEEEeecchhhhhHHHhhhhhcCCCCCCChhHHHhhhhccceeeecCCCCHHHHHHH
Q 010357 300 GSRLAVLLSILKHLFD-TEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTT 378 (512)
Q Consensus 300 ~~k~~~l~~~l~~~~~-~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~l~g~~~~~~r~~~ 378 (512)
..|.....-.+...+. ...+.++||.++++..+..+++.+...... .+..+..++|+.+.......
T Consensus 85 sGKT~~~~~~~~~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~-------------~~~~~~~~~g~~~~~~~~~~ 151 (410)
T 2j0s_A 85 TGKTATFSISVLQCLDIQVRETQALILAPTRELAVQIQKGLLALGDY-------------MNVQCHACIGGTNVGEDIRK 151 (410)
T ss_dssp SSHHHHHHHHHHHTCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTT-------------TTCCEEEECTTSCHHHHHHH
T ss_pred CCchHHHHHHHHHHHhhccCCceEEEEcCcHHHHHHHHHHHHHHhcc-------------CCeEEEEEECCCCHHHHHHH
Confidence 4566444433333322 235679999999999999999888775321 15567778888776655443
Q ss_pred HHhhhcCCCcEEEeec-----cccc-CCCCCCCcEEEE
Q 010357 379 FGAFKTEKKALLLSTD-----VAAR-GLDFPKVKCIIQ 410 (512)
Q Consensus 379 ~~~f~~~~~~vLvaT~-----~~~~-Gldip~~~~VI~ 410 (512)
+. . ...|+|+|. .+.. .++...+++||.
T Consensus 152 ~~---~-~~~ivv~Tp~~l~~~l~~~~~~~~~~~~vVi 185 (410)
T 2j0s_A 152 LD---Y-GQHVVAGTPGRVFDMIRRRSLRTRAIKMLVL 185 (410)
T ss_dssp HH---H-CCSEEEECHHHHHHHHHTTSSCCTTCCEEEE
T ss_pred hh---c-CCCEEEcCHHHHHHHHHhCCccHhheeEEEE
Confidence 32 2 358999995 2333 356667887774
No 404
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=63.05 E-value=5.1 Score=34.00 Aligned_cols=23 Identities=13% Similarity=0.316 Sum_probs=18.2
Q ss_pred cCCCEEEEccCCChHhHHHHHHH
Q 010357 55 SGRHVLVNAATGTGKTVAYLAPI 77 (512)
Q Consensus 55 ~~~~~lv~~pTGsGKT~~~~~~~ 77 (512)
.+..+++.|+.|||||..+-..+
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~ 31 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLV 31 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHHH
Confidence 45668899999999998765544
No 405
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=63.05 E-value=8.8 Score=46.61 Aligned_cols=62 Identities=11% Similarity=0.237 Sum_probs=38.1
Q ss_pred cCccCCcccCC---CCHHHHHHHHHhcCCCCCcHHHHH-H---HHHhhcCCCEEEEccCCChHhHHHHHHH
Q 010357 14 IFASCSFSSLG---LHSTLCDQLRERLGFEAPTKVQAQ-A---IPVILSGRHVLVNAATGTGKTVAYLAPI 77 (512)
Q Consensus 14 ~~~~~~~~~~~---l~~~~~~~l~~~~~~~~~~~~Q~~-~---~~~~~~~~~~lv~~pTGsGKT~~~~~~~ 77 (512)
+|++....... +...+.+.+ +..|+. +.+.+.. + ++.+..++.++++||||||||.++-..+
T Consensus 859 lFPgv~~~~~~~~~l~~ai~~~~-~~~~L~-~~~~~v~KviQLye~~~vRhGvmlVGp~gsGKTt~~~~L~ 927 (3245)
T 3vkg_A 859 VFPGSQLQPIQMDQLRKKIQEIA-KQRHLV-TKQEWVEKILQLHQILNINHGVMMVGPSGGGKTTSWEVYL 927 (3245)
T ss_dssp HSTTCCCCCCCCHHHHHHHHHHH-HHTTCC-CCHHHHHHHHHHHHHHTTCSEEEEECSSSSSHHHHHHHHH
T ss_pred hCCCCCCCCCchHHHHHHHHHHH-HHcCCc-cCHHHHHHHHHHHHHHHheeeEEEECCCCCCHHHHHHHHH
Confidence 35555544432 224455555 345776 6666653 3 3344456678999999999998875443
No 406
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=62.88 E-value=4.8 Score=40.25 Aligned_cols=23 Identities=22% Similarity=0.239 Sum_probs=18.2
Q ss_pred cCCCEEEEccCCChHhHHHHHHH
Q 010357 55 SGRHVLVNAATGTGKTVAYLAPI 77 (512)
Q Consensus 55 ~~~~~lv~~pTGsGKT~~~~~~~ 77 (512)
.+..+++.||+|+|||..+-..+
T Consensus 107 ~g~~vll~Gp~GtGKTtlar~ia 129 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAKSIA 129 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHH
Confidence 36679999999999997765443
No 407
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=62.78 E-value=4.5 Score=33.45 Aligned_cols=16 Identities=25% Similarity=0.322 Sum_probs=13.5
Q ss_pred CEEEEccCCChHhHHH
Q 010357 58 HVLVNAATGTGKTVAY 73 (512)
Q Consensus 58 ~~lv~~pTGsGKT~~~ 73 (512)
-.++.||+|+|||..+
T Consensus 28 ~~~i~G~NGsGKStll 43 (182)
T 3kta_A 28 FTAIVGANGSGKSNIG 43 (182)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred cEEEECCCCCCHHHHH
Confidence 5689999999999664
No 408
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=62.67 E-value=6.5 Score=39.15 Aligned_cols=41 Identities=24% Similarity=0.265 Sum_probs=27.6
Q ss_pred hhcCCCEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcCc
Q 010357 53 ILSGRHVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPT 102 (512)
Q Consensus 53 ~~~~~~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt 102 (512)
+..|.-+++.+|+|+|||......+...... +.+++++++-
T Consensus 278 i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~---------G~~vi~~~~e 318 (525)
T 1tf7_A 278 FFKDSIILATGATGTGKTLLVSRFVENACAN---------KERAILFAYE 318 (525)
T ss_dssp EESSCEEEEEECTTSSHHHHHHHHHHHHHTT---------TCCEEEEESS
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHHHhC---------CCCEEEEEEe
Confidence 3456778999999999997766555433221 4457777654
No 409
>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain, mutant, muscle contraction; HET: ADP; 1.75A {Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A* 1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A* 1d1c_A* 2xel_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 1jwy_A* 1jx2_A* 3mjx_A* 2jhr_A* ...
Probab=62.53 E-value=7.6 Score=40.29 Aligned_cols=63 Identities=19% Similarity=0.263 Sum_probs=38.8
Q ss_pred CccCCcccCCCCH-HHHHHHHHhcCCC----CCcHHHHHHHHHhh---cCCCEEEEccCCChHhHHHHHHHH
Q 010357 15 FASCSFSSLGLHS-TLCDQLRERLGFE----APTKVQAQAIPVIL---SGRHVLVNAATGTGKTVAYLAPII 78 (512)
Q Consensus 15 ~~~~~~~~~~l~~-~~~~~l~~~~~~~----~~~~~Q~~~~~~~~---~~~~~lv~~pTGsGKT~~~~~~~~ 78 (512)
.+.++|..+++.. +........ ... +.+.+=..|+..++ .++.+|+.|..|+|||.+.-..+-
T Consensus 124 vavNPyk~l~iY~~~~~~~Y~~~-~~~~~pPHifaiA~~Ay~~m~~~~~nQsIiisGESGAGKTe~tK~i~~ 194 (770)
T 1w9i_A 124 VAVNPFKRIPIYTQEMVDIFKGR-RRNEVAPHIFAISDVAYRSMLDDRQNQSLLITGESGAGKTENTKKVIQ 194 (770)
T ss_dssp EEECCSSCCSCCSHHHHHHHTTC-CGGGSCCCHHHHHHHHHHHHHHHCCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred EEecCCccccCCCHHHHHHhcCC-CcCCCCccHHHHHHHHHHHHHhhcCCcEEEEecCCCCcchHHHHHHHH
Confidence 5778888887654 444444322 222 22333445665554 345689999999999988655543
No 410
>4db1_A Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb, MYHC-beta, contractIle protein; HET: ANP; 2.60A {Homo sapiens} PDB: 2w4a_M 2w4g_M 2w4h_M 2mys_A* 1m8q_A* 1mvw_A* 1o18_A* 1o19_A* 1o1a_A* 1o1b_A* 1o1c_A* 1o1d_A* 1o1e_A* 1o1f_A* 1o1g_A*
Probab=62.50 E-value=7.5 Score=40.47 Aligned_cols=62 Identities=18% Similarity=0.256 Sum_probs=39.0
Q ss_pred CccCCcccCCCCH-HHHHHHHHhcCCC----CCcHHHHHHHHHhh---cCCCEEEEccCCChHhHHHHHHH
Q 010357 15 FASCSFSSLGLHS-TLCDQLRERLGFE----APTKVQAQAIPVIL---SGRHVLVNAATGTGKTVAYLAPI 77 (512)
Q Consensus 15 ~~~~~~~~~~l~~-~~~~~l~~~~~~~----~~~~~Q~~~~~~~~---~~~~~lv~~pTGsGKT~~~~~~~ 77 (512)
.+.++|..+++.. +........ ... +.+.+=..|+..++ .++.+|+.|..|+|||.+.=..+
T Consensus 123 vavNPyk~l~iY~~~~~~~Y~g~-~~~~~pPHifaiA~~Ay~~m~~~~~nQsIiiSGESGAGKTe~tK~im 192 (783)
T 4db1_A 123 VTVNPYKWLPVYTPEVVAAYRGK-KRSEAPPHIFSISDNAYQYMLTDRENQSILITGESGAGKTVNTKRVI 192 (783)
T ss_dssp EEECCSSCCSCSSHHHHHHHTTC-CGGGSCCCHHHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHHHHHHH
T ss_pred EecCCCccCCCCCHHHHHHhcCC-CcCCCCchhhHHHHHHHHHHHhhCCCceEEEeCCCCCCCchHHHHHH
Confidence 5778888888754 444444221 222 22344445665554 34568999999999998865544
No 411
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=62.45 E-value=5.1 Score=33.81 Aligned_cols=20 Identities=20% Similarity=0.292 Sum_probs=15.7
Q ss_pred CEEEEccCCChHhHHHHHHH
Q 010357 58 HVLVNAATGTGKTVAYLAPI 77 (512)
Q Consensus 58 ~~lv~~pTGsGKT~~~~~~~ 77 (512)
.+++.|+.|||||..+-..+
T Consensus 17 ~I~l~G~~GsGKsT~~~~L~ 36 (203)
T 1ukz_A 17 VIFVLGGPGAGKGTQCEKLV 36 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 47889999999997764433
No 412
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=62.40 E-value=7.1 Score=38.19 Aligned_cols=20 Identities=25% Similarity=0.277 Sum_probs=15.5
Q ss_pred CEEEEccCCChHhHHHHHHH
Q 010357 58 HVLVNAATGTGKTVAYLAPI 77 (512)
Q Consensus 58 ~~lv~~pTGsGKT~~~~~~~ 77 (512)
-+.+.|++|+|||......+
T Consensus 295 VI~LVGpNGSGKTTLl~~LA 314 (503)
T 2yhs_A 295 VILMVGVNGVGKTTTIGKLA 314 (503)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCcccHHHHHHHHH
Confidence 46789999999997765543
No 413
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=62.38 E-value=5.3 Score=33.59 Aligned_cols=20 Identities=15% Similarity=0.232 Sum_probs=15.8
Q ss_pred CEEEEccCCChHhHHHHHHH
Q 010357 58 HVLVNAATGTGKTVAYLAPI 77 (512)
Q Consensus 58 ~~lv~~pTGsGKT~~~~~~~ 77 (512)
.+++.|++|||||..+-..+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~ 21 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEIS 21 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHH
Confidence 46899999999997765544
No 414
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=62.25 E-value=3.8 Score=34.86 Aligned_cols=20 Identities=25% Similarity=0.167 Sum_probs=15.3
Q ss_pred CCCEEEEccCCChHhHHHHH
Q 010357 56 GRHVLVNAATGTGKTVAYLA 75 (512)
Q Consensus 56 ~~~~lv~~pTGsGKT~~~~~ 75 (512)
+.-+.+.||+|||||..+-+
T Consensus 6 ~~~i~i~G~~GsGKSTl~~~ 25 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTLAQA 25 (211)
T ss_dssp CEEEEEEESTTSSHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHH
Confidence 34567899999999976543
No 415
>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane, vanadate, transport, PRE- powerstroke, transition state, protein transport; HET: ADP; 1.75A {Sus scrofa} PDB: 2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A*
Probab=62.16 E-value=9.7 Score=39.73 Aligned_cols=63 Identities=13% Similarity=0.174 Sum_probs=39.5
Q ss_pred CccCCcccC-CCC-HHHHHHHHHhcCCCCC----cHHHHHHHHHhh---cCCCEEEEccCCChHhHHHHHHHH
Q 010357 15 FASCSFSSL-GLH-STLCDQLRERLGFEAP----TKVQAQAIPVIL---SGRHVLVNAATGTGKTVAYLAPII 78 (512)
Q Consensus 15 ~~~~~~~~~-~l~-~~~~~~l~~~~~~~~~----~~~Q~~~~~~~~---~~~~~lv~~pTGsGKT~~~~~~~~ 78 (512)
.+.++|..+ ++. ++.......+ ...++ +.+=..|+..++ .++.+|+.|.+|+|||.+.=..+-
T Consensus 91 iaVNPyk~l~~iY~~~~~~~Y~g~-~~~~~pPHifaiA~~Ay~~m~~~~~nQsIiiSGESGAGKTe~tK~i~~ 162 (784)
T 2v26_A 91 IAVNPYFDIPKIYSSETIKSYQGK-SLGTMPPHVFAIADKAFRDMKVLKLSQSIIVSGESGAGKTENTKFVLR 162 (784)
T ss_dssp EEECCSSCCTTTTSHHHHHHHTTC-CTTSSCSCHHHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred EEecCCcCcCCCCCHHHHHHHhCC-CcccCCchHHHHHHHHHHHHHhcCCCcEEEEcCCCCCCceehHHHHHH
Confidence 677888888 554 5555555322 22222 344445665554 345789999999999988655443
No 416
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=61.98 E-value=3.1 Score=34.29 Aligned_cols=19 Identities=16% Similarity=0.155 Sum_probs=14.6
Q ss_pred CEEEEccCCChHhHHHHHH
Q 010357 58 HVLVNAATGTGKTVAYLAP 76 (512)
Q Consensus 58 ~~lv~~pTGsGKT~~~~~~ 76 (512)
-+.+++++|||||....+.
T Consensus 4 ~v~IvG~SGsGKSTL~~~L 22 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRM 22 (171)
T ss_dssp EEEEEESCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4678999999999765443
No 417
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=61.94 E-value=5.6 Score=33.81 Aligned_cols=24 Identities=13% Similarity=0.230 Sum_probs=18.6
Q ss_pred cCCCEEEEccCCChHhHHHHHHHH
Q 010357 55 SGRHVLVNAATGTGKTVAYLAPII 78 (512)
Q Consensus 55 ~~~~~lv~~pTGsGKT~~~~~~~~ 78 (512)
.+..+++.|+.|||||..+-..+.
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 456688999999999987665443
No 418
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=61.84 E-value=6.2 Score=41.40 Aligned_cols=25 Identities=16% Similarity=0.147 Sum_probs=19.6
Q ss_pred cCCCEEEEccCCChHhHHHHHHHHH
Q 010357 55 SGRHVLVNAATGTGKTVAYLAPIIN 79 (512)
Q Consensus 55 ~~~~~lv~~pTGsGKT~~~~~~~~~ 79 (512)
...++++.||+|+|||.++-..+..
T Consensus 200 ~~~~vLL~G~pGtGKT~la~~la~~ 224 (758)
T 3pxi_A 200 TKNNPVLIGEPGVGKTAIAEGLAQQ 224 (758)
T ss_dssp SSCEEEEESCTTTTTHHHHHHHHHH
T ss_pred CCCCeEEECCCCCCHHHHHHHHHHH
Confidence 3458999999999999887655444
No 419
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Probab=61.33 E-value=8.2 Score=40.34 Aligned_cols=63 Identities=16% Similarity=0.241 Sum_probs=38.2
Q ss_pred CccCCcccCCCC-HHHHHHHHHhcCCCC----CcHHHHHHHHHhh---cCCCEEEEccCCChHhHHHHHHHH
Q 010357 15 FASCSFSSLGLH-STLCDQLRERLGFEA----PTKVQAQAIPVIL---SGRHVLVNAATGTGKTVAYLAPII 78 (512)
Q Consensus 15 ~~~~~~~~~~l~-~~~~~~l~~~~~~~~----~~~~Q~~~~~~~~---~~~~~lv~~pTGsGKT~~~~~~~~ 78 (512)
.+.++|..+++. ++........ ...+ .+.+=..|+..++ .++.+|+.|..|+|||.+.=..+-
T Consensus 108 iavNPyk~l~iY~~~~~~~Y~g~-~~~~~pPHifaiA~~Ay~~m~~~~~nQsIiisGESGAGKTe~tK~i~~ 178 (795)
T 1w7j_A 108 VAINPYEQLPIYGEDIINAYSGQ-NMGDMDPHIFAVAEEAYKQMARDERNQSIIVSGESGAGKTVSAKYAMR 178 (795)
T ss_dssp EEECCSSCCSCCSHHHHHHHTTC-CGGGSCCCHHHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred EEecCccccCcCCHHHHHHHcCC-CccCCCccHhHHHHHHHHHhHhcCCCeEEEEeCCCCCCcchHHHHHHH
Confidence 567788888765 3444444221 2221 2333445665554 345689999999999988655443
No 420
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=61.30 E-value=6.4 Score=41.93 Aligned_cols=23 Identities=26% Similarity=0.163 Sum_probs=18.0
Q ss_pred CEEEEccCCChHhHHHHHHHHHH
Q 010357 58 HVLVNAATGTGKTVAYLAPIINH 80 (512)
Q Consensus 58 ~~lv~~pTGsGKT~~~~~~~~~~ 80 (512)
++++.||||+|||..+-..+...
T Consensus 590 ~vLl~Gp~GtGKT~lA~~la~~~ 612 (854)
T 1qvr_A 590 SFLFLGPTGVGKTELAKTLAATL 612 (854)
T ss_dssp EEEEBSCSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999998776554443
No 421
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=61.14 E-value=4.7 Score=33.29 Aligned_cols=21 Identities=24% Similarity=0.270 Sum_probs=12.9
Q ss_pred CCCEEEEccCCChHhHHHHHH
Q 010357 56 GRHVLVNAATGTGKTVAYLAP 76 (512)
Q Consensus 56 ~~~~lv~~pTGsGKT~~~~~~ 76 (512)
+..+++.|+.|||||..+-..
T Consensus 5 ~~~I~l~G~~GsGKST~a~~L 25 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTL 25 (183)
T ss_dssp CCEEEEECCC----CHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHH
Confidence 456889999999999876554
No 422
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=61.03 E-value=5.9 Score=32.97 Aligned_cols=21 Identities=19% Similarity=0.169 Sum_probs=16.2
Q ss_pred CEEEEccCCChHhHHHHHHHH
Q 010357 58 HVLVNAATGTGKTVAYLAPII 78 (512)
Q Consensus 58 ~~lv~~pTGsGKT~~~~~~~~ 78 (512)
.+++.|+.|||||..+-..+.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 367899999999987655443
No 423
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=60.87 E-value=5.9 Score=34.18 Aligned_cols=21 Identities=19% Similarity=0.166 Sum_probs=16.5
Q ss_pred CEEEEccCCChHhHHHHHHHH
Q 010357 58 HVLVNAATGTGKTVAYLAPII 78 (512)
Q Consensus 58 ~~lv~~pTGsGKT~~~~~~~~ 78 (512)
.+++.|+.|||||..+-..+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999987655543
No 424
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=60.86 E-value=3.4 Score=49.38 Aligned_cols=21 Identities=29% Similarity=0.509 Sum_probs=18.1
Q ss_pred hhcCCCEEEEccCCChHhHHH
Q 010357 53 ILSGRHVLVNAATGTGKTVAY 73 (512)
Q Consensus 53 ~~~~~~~lv~~pTGsGKT~~~ 73 (512)
+..+++++++||||+|||..+
T Consensus 1264 l~~~~~vLL~GPpGtGKT~la 1284 (2695)
T 4akg_A 1264 LNSKRGIILCGPPGSGKTMIM 1284 (2695)
T ss_dssp HHHTCEEEEECSTTSSHHHHH
T ss_pred HHCCCeEEEECCCCCCHHHHH
Confidence 346789999999999999775
No 425
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=60.66 E-value=75 Score=26.72 Aligned_cols=71 Identities=15% Similarity=0.174 Sum_probs=47.4
Q ss_pred CceEEEEcCcHHHHHHHHHHHHHHHhhcCCcceEEEeCCCchHHHH---HHHc-CCCCEEEeCChHHHHHHhhcCCCcCC
Q 010357 93 GTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEK---ARLR-KGISILVATPGRLLDHLKHTSSFLHT 168 (512)
Q Consensus 93 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~---~~~~-~~~~Iiv~Tp~~l~~~l~~~~~~~~~ 168 (512)
+.++||.++++.-+..+++.+... + ..+..++++....... ..+. +..+|+|+|. .+. ..+++.
T Consensus 31 ~~~~lVF~~~~~~~~~l~~~L~~~----~-~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT~-----~~~--~Gidi~ 98 (212)
T 3eaq_A 31 PDRAMVFTRTKAETEEIAQGLLRL----G-HPAQALHGDLSQGERERVLGAFRQGEVRVLVATD-----VAA--RGLDIP 98 (212)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHHH----T-CCEEEECSSSCHHHHHHHHHHHHSSSCCEEEECT-----TTT--CSSSCC
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHc----C-CCEEEEECCCCHHHHHHHHHHHHCCCCeEEEecC-----hhh--cCCCCc
Confidence 567999999999999888888765 2 3455666665544433 2333 4488999993 222 455666
Q ss_pred ceeEEEE
Q 010357 169 NLRWIIF 175 (512)
Q Consensus 169 ~~~~lV~ 175 (512)
.+++||.
T Consensus 99 ~v~~Vi~ 105 (212)
T 3eaq_A 99 QVDLVVH 105 (212)
T ss_dssp CBSEEEE
T ss_pred cCcEEEE
Confidence 7887774
No 426
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=60.60 E-value=5 Score=33.97 Aligned_cols=19 Identities=26% Similarity=0.158 Sum_probs=15.0
Q ss_pred CEEEEccCCChHhHHHHHH
Q 010357 58 HVLVNAATGTGKTVAYLAP 76 (512)
Q Consensus 58 ~~lv~~pTGsGKT~~~~~~ 76 (512)
.+.+.||.|||||.++-..
T Consensus 4 ~i~l~G~~GsGKST~~~~L 22 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLF 22 (206)
T ss_dssp EEEEECSTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 3678999999999776444
No 427
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=60.37 E-value=26 Score=25.53 Aligned_cols=50 Identities=16% Similarity=0.203 Sum_probs=40.1
Q ss_pred EEEEeecchhhhhHHHhhhhhcCCCCCCChhHHHhhhhccceeeecCCCCHHHHHHHHHhhhcCCCc
Q 010357 322 LVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKA 388 (512)
Q Consensus 322 ~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~l~g~~~~~~r~~~~~~f~~~~~~ 388 (512)
.++|.+..+....+.+.+++. |..+..+.++.....|...++.|.+....
T Consensus 5 fvvfssdpeilkeivreikrq-----------------gvrvvllysdqdekrrrerleefekqgvd 54 (162)
T 2l82_A 5 FVVFSSDPEILKEIVREIKRQ-----------------GVRVVLLYSDQDEKRRRERLEEFEKQGVD 54 (162)
T ss_dssp EEEEESCHHHHHHHHHHHHHT-----------------TCEEEEEECCSCHHHHHHHHHHHHTTTCE
T ss_pred EEEecCCHHHHHHHHHHHHhC-----------------CeEEEEEecCchHHHHHHHHHHHHHcCCc
Confidence 456777777777777887777 88999999999999999999999875333
No 428
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=60.27 E-value=6 Score=37.22 Aligned_cols=18 Identities=28% Similarity=0.486 Sum_probs=14.5
Q ss_pred CEEEEccCCChHhHHHHH
Q 010357 58 HVLVNAATGTGKTVAYLA 75 (512)
Q Consensus 58 ~~lv~~pTGsGKT~~~~~ 75 (512)
-.++.||||+|||..+-.
T Consensus 25 ~~~i~G~NGaGKTTll~a 42 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLFEA 42 (365)
T ss_dssp EEEEECCTTSSHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHH
Confidence 467999999999976533
No 429
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1
Probab=60.19 E-value=9.8 Score=41.04 Aligned_cols=62 Identities=19% Similarity=0.279 Sum_probs=39.0
Q ss_pred CccCCcccCCCC-HHHHHHHHHhcCCCCC----cHHHHHHHHHhh---cCCCEEEEccCCChHhHHHHHHH
Q 010357 15 FASCSFSSLGLH-STLCDQLRERLGFEAP----TKVQAQAIPVIL---SGRHVLVNAATGTGKTVAYLAPI 77 (512)
Q Consensus 15 ~~~~~~~~~~l~-~~~~~~l~~~~~~~~~----~~~Q~~~~~~~~---~~~~~lv~~pTGsGKT~~~~~~~ 77 (512)
.+.++|..+++. ++........ ...++ +.+=..|+..++ .++.+|+.|.+|+|||.+.=..+
T Consensus 124 vavNPyk~l~iy~~~~~~~Y~~~-~~~~~pPHifaiA~~Ay~~m~~~~~~QsIiisGESGAGKTe~~K~i~ 193 (1010)
T 1g8x_A 124 VAVNPFKRIPIYTQEMVDIFKGR-RRNEVAPHIFAISDVAYRSMLDDRQNQSLLITGESGAGKTENTKKVI 193 (1010)
T ss_dssp EEECCSSCCSCCSHHHHHHHTTC-CTTTSCCCHHHHHHHHHHHHHHHTCCEEEEEEESTTSSHHHHHHHHH
T ss_pred EEecCCccccCCCHHHHHHhcCC-CccCCCccHHHHHHHHHHHHHhcCCCeEEEEeCCCCCCcchHHHHHH
Confidence 577888888865 4455555332 22222 333345665554 34568999999999998865544
No 430
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=59.69 E-value=5 Score=33.87 Aligned_cols=19 Identities=16% Similarity=0.184 Sum_probs=15.1
Q ss_pred CEEEEccCCChHhHHHHHH
Q 010357 58 HVLVNAATGTGKTVAYLAP 76 (512)
Q Consensus 58 ~~lv~~pTGsGKT~~~~~~ 76 (512)
.+.+.|++|||||..+-..
T Consensus 3 ~i~i~G~~GsGKSTl~~~L 21 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMF 21 (204)
T ss_dssp EEEEEECTTSSHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHH
Confidence 4789999999999775443
No 431
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=59.62 E-value=5.6 Score=35.14 Aligned_cols=23 Identities=22% Similarity=0.247 Sum_probs=17.7
Q ss_pred cCCCEEEEccCCChHhHHHHHHH
Q 010357 55 SGRHVLVNAATGTGKTVAYLAPI 77 (512)
Q Consensus 55 ~~~~~lv~~pTGsGKT~~~~~~~ 77 (512)
.+..+.+.||+|||||..+-+.+
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 45568899999999997765443
No 432
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=59.12 E-value=5.1 Score=32.99 Aligned_cols=23 Identities=30% Similarity=0.329 Sum_probs=18.3
Q ss_pred cCCCEEEEccCCChHhHHHHHHH
Q 010357 55 SGRHVLVNAATGTGKTVAYLAPI 77 (512)
Q Consensus 55 ~~~~~lv~~pTGsGKT~~~~~~~ 77 (512)
.|+-+++.++.|+|||..++..+
T Consensus 15 ~G~gvli~G~SGaGKStlal~L~ 37 (181)
T 3tqf_A 15 DKMGVLITGEANIGKSELSLALI 37 (181)
T ss_dssp TTEEEEEEESSSSSHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHH
Confidence 45678999999999997765544
No 433
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=58.84 E-value=6.9 Score=32.68 Aligned_cols=19 Identities=16% Similarity=0.267 Sum_probs=15.4
Q ss_pred EEEEccCCChHhHHHHHHH
Q 010357 59 VLVNAATGTGKTVAYLAPI 77 (512)
Q Consensus 59 ~lv~~pTGsGKT~~~~~~~ 77 (512)
+++.|+.|||||..+-...
T Consensus 3 I~l~G~~GsGKsT~~~~L~ 21 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQLLA 21 (197)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 6789999999998766544
No 434
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=58.74 E-value=5.3 Score=33.61 Aligned_cols=19 Identities=16% Similarity=0.218 Sum_probs=15.2
Q ss_pred CEEEEccCCChHhHHHHHH
Q 010357 58 HVLVNAATGTGKTVAYLAP 76 (512)
Q Consensus 58 ~~lv~~pTGsGKT~~~~~~ 76 (512)
.+.+.+++|||||.++-..
T Consensus 10 ~I~i~G~~GsGKST~~~~L 28 (203)
T 1uf9_A 10 IIGITGNIGSGKSTVAALL 28 (203)
T ss_dssp EEEEEECTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4678999999999776443
No 435
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=58.69 E-value=4.6 Score=35.26 Aligned_cols=18 Identities=28% Similarity=0.562 Sum_probs=15.3
Q ss_pred cCCCEEEEccCCChHhHH
Q 010357 55 SGRHVLVNAATGTGKTVA 72 (512)
Q Consensus 55 ~~~~~lv~~pTGsGKT~~ 72 (512)
.|.-+.+.||.|||||..
T Consensus 30 ~Ge~~~iiG~nGsGKSTL 47 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKSTM 47 (235)
T ss_dssp TTCEEEEECSTTSSHHHH
T ss_pred CCCEEEEECCCCCcHHHH
Confidence 567788999999999954
No 436
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Probab=58.58 E-value=8.1 Score=40.61 Aligned_cols=62 Identities=18% Similarity=0.239 Sum_probs=38.5
Q ss_pred CccCCcccCCCC-HHHHHHHHHhcCCCC----CcHHHHHHHHHhh---cCCCEEEEccCCChHhHHHHHHH
Q 010357 15 FASCSFSSLGLH-STLCDQLRERLGFEA----PTKVQAQAIPVIL---SGRHVLVNAATGTGKTVAYLAPI 77 (512)
Q Consensus 15 ~~~~~~~~~~l~-~~~~~~l~~~~~~~~----~~~~Q~~~~~~~~---~~~~~lv~~pTGsGKT~~~~~~~ 77 (512)
.+.++|..+++. ++........ ...+ .+.+=..|+..++ .++.+|+.|.+|+|||.+.=..+
T Consensus 121 iavNPyk~l~iY~~~~~~~Y~g~-~~~~~pPHifaiA~~Ay~~m~~~~~nQsIiiSGESGAGKTe~tK~i~ 190 (837)
T 1kk8_A 121 IAVNPYRRLPIYTDSVIAKYRGK-RKTEIPPHLFSVADNAYQNMVTDRENQSCLITGESGAGKTENTKKVI 190 (837)
T ss_dssp EEECCSSCCSTTSHHHHHHHTTC-CGGGSCCCHHHHHHHHHHHHHHHTSEEEEEEECSTTSSHHHHHHHHH
T ss_pred EEeCCCcCCCCCCHHHHHHhcCC-CcCCCCCcHHHHHHHHHHHHHhcCCCcEEEEeCCCCCCchhhHHHHH
Confidence 577888888765 4444444322 2222 2333445665554 34568999999999998865544
No 437
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=58.57 E-value=1.3e+02 Score=29.80 Aligned_cols=76 Identities=17% Similarity=0.149 Sum_probs=50.9
Q ss_pred CceEEEEcCcHHHHHHHHHHHHHHHhhcCCcceEEEeCCCchHHHHH---HH-cCCCCEEEeCChHHHHHHhhcCCCcCC
Q 010357 93 GTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEKA---RL-RKGISILVATPGRLLDHLKHTSSFLHT 168 (512)
Q Consensus 93 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~-~~~~~Iiv~Tp~~l~~~l~~~~~~~~~ 168 (512)
+.++||.++++.-+..+++.+...... ...+..++++........ .+ .+..+|+|+|. .+. ..+++.
T Consensus 339 ~~~~iVF~~s~~~~~~l~~~L~~~~~~--~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~-----~~~--~GiDip 409 (563)
T 3i5x_A 339 NYKAIIFAPTVKFTSFLCSILKNEFKK--DLPILEFHGKITQNKRTSLVKRFKKDESGILVCTD-----VGA--RGMDFP 409 (563)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHHHTT--TSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECG-----GGT--SSCCCT
T ss_pred CCcEEEEcCcHHHHHHHHHHHHHhccC--CceEEEecCCCCHHHHHHHHHHHhcCCCCEEEEcc-----hhh--cCCCcc
Confidence 667999999999999999988876431 234555666655444322 22 24588999994 222 456666
Q ss_pred ceeEEEEcc
Q 010357 169 NLRWIIFDE 177 (512)
Q Consensus 169 ~~~~lV~DE 177 (512)
++++||.-.
T Consensus 410 ~v~~VI~~~ 418 (563)
T 3i5x_A 410 NVHEVLQIG 418 (563)
T ss_dssp TCCEEEEES
T ss_pred cCCEEEEEC
Confidence 788877544
No 438
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=58.09 E-value=9.4 Score=37.60 Aligned_cols=35 Identities=14% Similarity=0.150 Sum_probs=23.9
Q ss_pred CEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcC
Q 010357 58 HVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVP 101 (512)
Q Consensus 58 ~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P 101 (512)
.+++++++|+|||..+...+...... +.+++++..
T Consensus 103 vI~ivG~~GvGKTTl~~kLA~~l~~~---------G~kVllVd~ 137 (504)
T 2j37_W 103 VIMFVGLQGSGKTTTCSKLAYYYQRK---------GWKTCLICA 137 (504)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHT---------TCCEEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhC---------CCeEEEEec
Confidence 46789999999998876666544332 455666654
No 439
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=57.84 E-value=16 Score=31.71 Aligned_cols=98 Identities=14% Similarity=0.192 Sum_probs=57.5
Q ss_pred CCchHHH-HHHHHHhhhc-cccCceEEEEeecchhhhhHHHhhhhhcCCCCCCChhHHHhhhhccceeeecCCCCHHHHH
Q 010357 299 CGSRLAV-LLSILKHLFD-TEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRR 376 (512)
Q Consensus 299 ~~~k~~~-l~~~l~~~~~-~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~l~g~~~~~~r~ 376 (512)
...|... +...+..+.. ...+.+++|.++++..+..+++.+....... +..+..++|+....
T Consensus 76 GsGKT~~~~l~~l~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~-------------~~~~~~~~~~~~~~--- 139 (245)
T 3dkp_A 76 GSGKTLAFSIPILMQLKQPANKGFRALIISPTRELASQIHRELIKISEGT-------------GFRIHMIHKAAVAA--- 139 (245)
T ss_dssp TSCHHHHHHHHHHHHHCSCCSSSCCEEEECSSHHHHHHHHHHHHHHTTTS-------------CCCEECCCHHHHHH---
T ss_pred CCcHHHHHHHHHHHHHhhcccCCceEEEEeCCHHHHHHHHHHHHHHhccc-------------CceEEEEecCccHH---
Confidence 4456544 3444444322 1244589999999999999999887763211 44555555542211
Q ss_pred HHHHhhhcCCCcEEEeecc-----ccc---CCCCCCCcEEEEeC
Q 010357 377 TTFGAFKTEKKALLLSTDV-----AAR---GLDFPKVKCIIQYD 412 (512)
Q Consensus 377 ~~~~~f~~~~~~vLvaT~~-----~~~---Gldip~~~~VI~~~ 412 (512)
........+..+|+|+|.- +.. ++++.+++++|.-.
T Consensus 140 ~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~~~lViDE 183 (245)
T 3dkp_A 140 KKFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLASVEWLVVDE 183 (245)
T ss_dssp TTTSTTSCCCCCEEEECHHHHHHHHHSSSCSCCCTTCCEEEESS
T ss_pred HHhhhhhcCCCCEEEECHHHHHHHHHhCCCCcccccCcEEEEeC
Confidence 1122233456789999942 112 46777888777543
No 440
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=57.80 E-value=11 Score=36.34 Aligned_cols=23 Identities=26% Similarity=0.101 Sum_probs=17.8
Q ss_pred CEEEEccCCChHhHHHHHHHHHH
Q 010357 58 HVLVNAATGTGKTVAYLAPIINH 80 (512)
Q Consensus 58 ~~lv~~pTGsGKT~~~~~~~~~~ 80 (512)
.+++++++|+|||.++.-.+...
T Consensus 102 vI~ivG~~GvGKTT~a~~LA~~l 124 (433)
T 2xxa_A 102 VVLMAGLQGAGKTTSVGKLGKFL 124 (433)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 46778999999998877666544
No 441
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Probab=57.77 E-value=9.7 Score=41.05 Aligned_cols=62 Identities=18% Similarity=0.236 Sum_probs=38.7
Q ss_pred CccCCcccCCCC-HHHHHHHHHhcCCC----CCcHHHHHHHHHhh---cCCCEEEEccCCChHhHHHHHHH
Q 010357 15 FASCSFSSLGLH-STLCDQLRERLGFE----APTKVQAQAIPVIL---SGRHVLVNAATGTGKTVAYLAPI 77 (512)
Q Consensus 15 ~~~~~~~~~~l~-~~~~~~l~~~~~~~----~~~~~Q~~~~~~~~---~~~~~lv~~pTGsGKT~~~~~~~ 77 (512)
.+.++|..+++. ++........ ... +.+.+=..|+..++ .++.+|+.|.+|+|||.+.=..+
T Consensus 98 vavNPyk~l~iy~~~~~~~Y~~~-~~~~~pPHifaiA~~Ay~~m~~~~~~QsIiisGESGAGKTe~~K~i~ 167 (995)
T 2ycu_A 98 VVINPYKQLPIYTEAIVEMYRGK-KRHEVPPHVYAVTEGAYRSMLQDREDQSILCTGESGAGKTENTKKVI 167 (995)
T ss_dssp EEECCSSCCSCCSHHHHHHHTTC-CGGGSCCCHHHHHHHHHHHHHHHCCCEEEEEECBTTSSHHHHHHHHH
T ss_pred eeeCCccccCCCCHHHHHHhcCC-ccCCCCchHHHHhHHHHHHHHhcCCCcEEEecCCCCCCchhhHHHHH
Confidence 577889888865 4444444322 222 22333445665554 34568999999999998865544
No 442
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=57.65 E-value=9.6 Score=41.49 Aligned_cols=63 Identities=17% Similarity=0.296 Sum_probs=37.9
Q ss_pred CccCCcccCCCCH-HHHHHHHHhcCCCC--C--cHHHHHHHHHhh---cCCCEEEEccCCChHhHHHHHHHH
Q 010357 15 FASCSFSSLGLHS-TLCDQLRERLGFEA--P--TKVQAQAIPVIL---SGRHVLVNAATGTGKTVAYLAPII 78 (512)
Q Consensus 15 ~~~~~~~~~~l~~-~~~~~l~~~~~~~~--~--~~~Q~~~~~~~~---~~~~~lv~~pTGsGKT~~~~~~~~ 78 (512)
.+.+||..+++.. +........ ...+ | +.+=..|+..++ .++.+|+.|.+|+|||.+.=..+-
T Consensus 108 iavNPyk~l~iy~~~~~~~Y~~~-~~~~~pPHifaiA~~Ay~~m~~~~~~QsIiisGESGAGKTe~~K~i~~ 178 (1080)
T 2dfs_A 108 VAINPYEQLPIYGEDIINAYSGQ-NMGDMDPHIFAVAEEAYKQMARDERNQSIIVSGESGAGKTVSAKYAMR 178 (1080)
T ss_dssp EEECCSSCCSCSSHHHHHHHTTC-CGGGSCCCHHHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred EEecCCcccccCCHHHHHHhcCC-CCCCCCCcHHHHHHHHHHHHHhcCCCcEEEEcCCCCCCccchHHHHHH
Confidence 5677888887653 444444221 2221 2 333345665554 345689999999999988655443
No 443
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=57.65 E-value=5.4 Score=39.27 Aligned_cols=57 Identities=21% Similarity=0.272 Sum_probs=33.4
Q ss_pred ccCCcccCCCCHHHHHHHHHhcCC-CCCcHHHHHHHHHh--hcCCCEEEEccCCChHhHHHHHHH
Q 010357 16 ASCSFSSLGLHSTLCDQLRERLGF-EAPTKVQAQAIPVI--LSGRHVLVNAATGTGKTVAYLAPI 77 (512)
Q Consensus 16 ~~~~~~~~~l~~~~~~~l~~~~~~-~~~~~~Q~~~~~~~--~~~~~~lv~~pTGsGKT~~~~~~~ 77 (512)
...+|+++.-.++....+.+...+ ..+ ..+..+ .-.+.+++.||+|+|||..+-..+
T Consensus 26 ~~~~f~dv~G~~~~k~~l~~lv~~l~~~-----~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa 85 (499)
T 2dhr_A 26 PKVTFKDVAGAEEAKEELKEIVEFLKNP-----SRFHEMGARIPKGVLLVGPPGVGKTHLARAVA 85 (499)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHHHHHCG-----GGTTTTSCCCCSEEEEECSSSSSHHHHHHHHH
T ss_pred CCCCHHHcCCcHHHHHHHHHHHHHhhch-----hhhhhccCCCCceEEEECCCCCCHHHHHHHHH
Confidence 567888887777777777542110 001 111111 012458999999999997765443
No 444
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=57.60 E-value=6.7 Score=37.01 Aligned_cols=17 Identities=24% Similarity=0.417 Sum_probs=14.2
Q ss_pred CEEEEccCCChHhHHHH
Q 010357 58 HVLVNAATGTGKTVAYL 74 (512)
Q Consensus 58 ~~lv~~pTGsGKT~~~~ 74 (512)
-.++.||||+|||...-
T Consensus 27 l~vi~G~NGaGKT~ile 43 (371)
T 3auy_A 27 IVAIIGENGSGKSSIFE 43 (371)
T ss_dssp EEEEEECTTSSHHHHHH
T ss_pred eEEEECCCCCCHHHHHH
Confidence 46899999999997744
No 445
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=57.44 E-value=7.3 Score=32.74 Aligned_cols=20 Identities=25% Similarity=0.190 Sum_probs=15.8
Q ss_pred EEEEccCCChHhHHHHHHHH
Q 010357 59 VLVNAATGTGKTVAYLAPII 78 (512)
Q Consensus 59 ~lv~~pTGsGKT~~~~~~~~ 78 (512)
+.+.|++|||||.++-....
T Consensus 15 IgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 15 IGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 56899999999988765543
No 446
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=57.26 E-value=4.6 Score=35.70 Aligned_cols=21 Identities=24% Similarity=0.301 Sum_probs=16.3
Q ss_pred CCEEEEccCCChHhHHHHHHH
Q 010357 57 RHVLVNAATGTGKTVAYLAPI 77 (512)
Q Consensus 57 ~~~lv~~pTGsGKT~~~~~~~ 77 (512)
..+++.|++|||||..+-..+
T Consensus 33 ~~i~l~G~~GsGKSTla~~L~ 53 (253)
T 2p5t_B 33 IAILLGGQSGAGKTTIHRIKQ 53 (253)
T ss_dssp EEEEEESCGGGTTHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 357899999999997765443
No 447
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=56.96 E-value=6.2 Score=34.60 Aligned_cols=22 Identities=14% Similarity=0.119 Sum_probs=17.0
Q ss_pred CCCEEEEccCCChHhHHHHHHH
Q 010357 56 GRHVLVNAATGTGKTVAYLAPI 77 (512)
Q Consensus 56 ~~~~lv~~pTGsGKT~~~~~~~ 77 (512)
...+++.||.|||||..+-..+
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 4578999999999997654433
No 448
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=56.93 E-value=14 Score=36.76 Aligned_cols=95 Identities=14% Similarity=0.148 Sum_probs=59.7
Q ss_pred CCchHHHHHHHHHhhhcccc---CceEEEEeecchhhhhHHHhhhhhcCCCCCCChhHHHhhhhccceeeecCCCCHHHH
Q 010357 299 CGSRLAVLLSILKHLFDTEV---SQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDR 375 (512)
Q Consensus 299 ~~~k~~~l~~~l~~~~~~~~---~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~l~g~~~~~~r 375 (512)
...|.....-.+...+...+ +.++||+++++..+..+.+.+...... .+..+..++|+.+...+
T Consensus 29 GsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~-------------~~~~~~~~~g~~~~~~~ 95 (555)
T 3tbk_A 29 GCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQIPVYEQQATVFSRYFER-------------LGYNIASISGATSDSVS 95 (555)
T ss_dssp TSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHT-------------TTCCEEEECTTTGGGSC
T ss_pred CChHHHHHHHHHHHHHHhcccCCCCEEEEEeCCHHHHHHHHHHHHHHhcc-------------CCcEEEEEcCCCcchhh
Confidence 34566554444444433333 679999999999999888888765221 16678889999865544
Q ss_pred HHHHHhhhcCCCcEEEeecc-----cccC-C-CCCCCcEEEE
Q 010357 376 RTTFGAFKTEKKALLLSTDV-----AARG-L-DFPKVKCIIQ 410 (512)
Q Consensus 376 ~~~~~~f~~~~~~vLvaT~~-----~~~G-l-dip~~~~VI~ 410 (512)
...+ .. ..+|+|+|.- +..+ + ++..+++||.
T Consensus 96 ~~~~---~~-~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vVi 133 (555)
T 3tbk_A 96 VQHI---IE-DNDIIILTPQILVNNLNNGAIPSLSVFTLMIF 133 (555)
T ss_dssp HHHH---HH-HCSEEEECHHHHHHHHHTSSSCCGGGCSEEEE
T ss_pred HHHH---hc-CCCEEEECHHHHHHHHhcCcccccccCCEEEE
Confidence 3222 11 3689999953 2222 3 4556777774
No 449
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=56.90 E-value=5.2 Score=35.00 Aligned_cols=19 Identities=32% Similarity=0.408 Sum_probs=15.8
Q ss_pred cCCCEEEEccCCChHhHHH
Q 010357 55 SGRHVLVNAATGTGKTVAY 73 (512)
Q Consensus 55 ~~~~~lv~~pTGsGKT~~~ 73 (512)
.|+-+.+.||.|||||...
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl 48 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSSLL 48 (237)
T ss_dssp TTCEEEEECSTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 5677889999999999553
No 450
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=56.40 E-value=4.4 Score=37.04 Aligned_cols=19 Identities=21% Similarity=0.499 Sum_probs=15.9
Q ss_pred cCCCEEEEccCCChHhHHH
Q 010357 55 SGRHVLVNAATGTGKTVAY 73 (512)
Q Consensus 55 ~~~~~lv~~pTGsGKT~~~ 73 (512)
.|+.+.+.||+|+|||...
T Consensus 79 ~Ge~vaivG~sGsGKSTLl 97 (306)
T 3nh6_A 79 PGQTLALVGPSGAGKSTIL 97 (306)
T ss_dssp TTCEEEEESSSCHHHHHHH
T ss_pred CCCEEEEECCCCchHHHHH
Confidence 5677899999999999654
No 451
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=56.34 E-value=11 Score=34.61 Aligned_cols=33 Identities=30% Similarity=0.387 Sum_probs=23.6
Q ss_pred EEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEc
Q 010357 59 VLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLV 100 (512)
Q Consensus 59 ~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~ 100 (512)
+++.+..|.|||.++...+...... +.+++++-
T Consensus 17 ~v~sgKGGvGKTTvA~~LA~~lA~~---------G~rVLlvD 49 (324)
T 3zq6_A 17 VFIGGKGGVGKTTISAATALWMARS---------GKKTLVIS 49 (324)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHT---------TCCEEEEE
T ss_pred EEEeCCCCchHHHHHHHHHHHHHHC---------CCcEEEEe
Confidence 4667889999999987776665544 55566654
No 452
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=56.33 E-value=75 Score=25.31 Aligned_cols=73 Identities=15% Similarity=0.141 Sum_probs=46.9
Q ss_pred CceEEEEcCcHHHHHHHHHHHHHHHhhcCCcceEEEeCCCchHHHH---HHHc-CCCCEEEeCChHHHHHHhhcCCCcCC
Q 010357 93 GTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEK---ARLR-KGISILVATPGRLLDHLKHTSSFLHT 168 (512)
Q Consensus 93 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~---~~~~-~~~~Iiv~Tp~~l~~~l~~~~~~~~~ 168 (512)
+.++||.++++.-+..++..+... + ..+..+.++....... ..+. +..+|+|+|. .+. ..+++.
T Consensus 30 ~~~~lVF~~~~~~~~~l~~~L~~~----~-~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~~--~G~d~~ 97 (165)
T 1fuk_A 30 VTQAVIFCNTRRKVEELTTKLRND----K-FTVSAIYSDLPQQERDTIMKEFRSGSSRILISTD-----LLA--RGIDVQ 97 (165)
T ss_dssp CSCEEEEESSHHHHHHHHHHHHHT----T-CCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEEG-----GGT--TTCCCC
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc----C-CCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcC-----hhh--cCCCcc
Confidence 567999999999998888888764 2 3445566665544332 2333 4478999993 222 445556
Q ss_pred ceeEEEEcc
Q 010357 169 NLRWIIFDE 177 (512)
Q Consensus 169 ~~~~lV~DE 177 (512)
.+++||.-.
T Consensus 98 ~~~~Vi~~~ 106 (165)
T 1fuk_A 98 QVSLVINYD 106 (165)
T ss_dssp SCSEEEESS
T ss_pred cCCEEEEeC
Confidence 777777643
No 453
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=56.25 E-value=5.9 Score=33.99 Aligned_cols=19 Identities=32% Similarity=0.441 Sum_probs=16.1
Q ss_pred cCCCEEEEccCCChHhHHH
Q 010357 55 SGRHVLVNAATGTGKTVAY 73 (512)
Q Consensus 55 ~~~~~lv~~pTGsGKT~~~ 73 (512)
.|+-+.+.||.|+|||...
T Consensus 34 ~Ge~~~iiG~NGsGKSTLl 52 (214)
T 1sgw_A 34 KGNVVNFHGPNGIGKTTLL 52 (214)
T ss_dssp TTCCEEEECCTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 6778899999999999553
No 454
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=56.06 E-value=15 Score=30.28 Aligned_cols=18 Identities=33% Similarity=0.307 Sum_probs=14.0
Q ss_pred CEEEEccCCChHhHHHHH
Q 010357 58 HVLVNAATGTGKTVAYLA 75 (512)
Q Consensus 58 ~~lv~~pTGsGKT~~~~~ 75 (512)
-+++.|+.|+|||.....
T Consensus 8 ~i~i~G~sGsGKTTl~~~ 25 (174)
T 1np6_A 8 LLAFAAWSGTGKTTLLKK 25 (174)
T ss_dssp EEEEECCTTSCHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHH
Confidence 467899999999965443
No 455
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=56.00 E-value=6.4 Score=41.30 Aligned_cols=21 Identities=29% Similarity=0.281 Sum_probs=17.2
Q ss_pred CEEEEccCCChHhHHHHHHHH
Q 010357 58 HVLVNAATGTGKTVAYLAPII 78 (512)
Q Consensus 58 ~~lv~~pTGsGKT~~~~~~~~ 78 (512)
++++.||||+|||..+-..+.
T Consensus 490 ~~ll~G~~GtGKT~la~~la~ 510 (758)
T 1r6b_X 490 SFLFAGPTGVGKTEVTVQLSK 510 (758)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHH
Confidence 589999999999988765443
No 456
>4h1g_A Maltose binding protein-cakar3 motor domain fusio; kinesin motor domain, motor protein, chimera; HET: MTT ADP EDO; 2.15A {Escherichia coli}
Probab=55.75 E-value=7.4 Score=40.42 Aligned_cols=25 Identities=36% Similarity=0.543 Sum_probs=19.7
Q ss_pred HHHHhhcCCCE--EEEccCCChHhHHH
Q 010357 49 AIPVILSGRHV--LVNAATGTGKTVAY 73 (512)
Q Consensus 49 ~~~~~~~~~~~--lv~~pTGsGKT~~~ 73 (512)
.+..+++|.|+ +.-|+||||||++.
T Consensus 454 ~v~~~~~G~n~~i~ayGqtgsGKT~Tm 480 (715)
T 4h1g_A 454 LIQCSLDGTNVCVFAYGQTGSGKTFTM 480 (715)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHhCCceEEEEccCCCCCchhhcc
Confidence 56677788764 56799999999875
No 457
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=55.68 E-value=12 Score=34.59 Aligned_cols=33 Identities=21% Similarity=0.298 Sum_probs=24.0
Q ss_pred CEEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEE
Q 010357 58 HVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVL 99 (512)
Q Consensus 58 ~~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil 99 (512)
-+++.+..|.|||.++...+...... |.+++++
T Consensus 21 i~v~sgkGGvGKTTva~~LA~~lA~~---------G~rVllv 53 (329)
T 2woo_A 21 WIFVGGKGGVGKTTTSCSLAIQMSKV---------RSSVLLI 53 (329)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHHTS---------SSCEEEE
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHC---------CCeEEEE
Confidence 35678889999999887776665543 6667776
No 458
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=55.59 E-value=14 Score=31.45 Aligned_cols=33 Identities=27% Similarity=0.215 Sum_probs=22.2
Q ss_pred EEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEcC
Q 010357 60 LVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVP 101 (512)
Q Consensus 60 lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P 101 (512)
+....+|.|||.+++-.+...... |.+++++=|
T Consensus 6 v~s~kgGvGKTt~a~nLa~~la~~---------G~rVll~dp 38 (224)
T 1byi_A 6 VTGTDTEVGKTVASCALLQAAKAA---------GYRTAGYKP 38 (224)
T ss_dssp EEESSTTSCHHHHHHHHHHHHHHT---------TCCEEEECS
T ss_pred EEECCCCCCHHHHHHHHHHHHHHC---------CCCEEEEcc
Confidence 334458999999887766555443 666777644
No 459
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=55.59 E-value=5.2 Score=42.19 Aligned_cols=22 Identities=36% Similarity=0.442 Sum_probs=17.8
Q ss_pred cCCCEEEEccCCChHhHHHHHH
Q 010357 55 SGRHVLVNAATGTGKTVAYLAP 76 (512)
Q Consensus 55 ~~~~~lv~~pTGsGKT~~~~~~ 76 (512)
.++.+++.||+|+|||..+-..
T Consensus 237 ~~~~vLL~Gp~GtGKTtLaral 258 (806)
T 1ypw_A 237 PPRGILLYGPPGTGKTLIARAV 258 (806)
T ss_dssp CCCEEEECSCTTSSHHHHHHHH
T ss_pred CCCeEEEECcCCCCHHHHHHHH
Confidence 4678999999999999765443
No 460
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=55.57 E-value=7.3 Score=40.86 Aligned_cols=24 Identities=21% Similarity=0.187 Sum_probs=19.0
Q ss_pred CCCEEEEccCCChHhHHHHHHHHH
Q 010357 56 GRHVLVNAATGTGKTVAYLAPIIN 79 (512)
Q Consensus 56 ~~~~lv~~pTGsGKT~~~~~~~~~ 79 (512)
+.++++.||+|+|||..+-..+..
T Consensus 207 ~~~vlL~G~~GtGKT~la~~la~~ 230 (758)
T 1r6b_X 207 KNNPLLVGESGVGKTAIAEGLAWR 230 (758)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEcCCCCCHHHHHHHHHHH
Confidence 468999999999999876655443
No 461
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=55.03 E-value=6.4 Score=31.84 Aligned_cols=20 Identities=30% Similarity=0.308 Sum_probs=15.8
Q ss_pred hcCCCEEEEccCCChHhHHH
Q 010357 54 LSGRHVLVNAATGTGKTVAY 73 (512)
Q Consensus 54 ~~~~~~lv~~pTGsGKT~~~ 73 (512)
..|.-+.+.||.|+|||...
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLl 50 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLT 50 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHH
Confidence 35666789999999999543
No 462
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=54.95 E-value=12 Score=37.78 Aligned_cols=27 Identities=22% Similarity=0.234 Sum_probs=20.9
Q ss_pred CCEEEEccCCChHhHHHHHHHHHHHhh
Q 010357 57 RHVLVNAATGTGKTVAYLAPIINHLQS 83 (512)
Q Consensus 57 ~~~lv~~pTGsGKT~~~~~~~~~~~~~ 83 (512)
+-+++.+..|.|||.++...+......
T Consensus 9 ~i~~~sgkGGvGKTT~a~~lA~~lA~~ 35 (589)
T 1ihu_A 9 PYLFFTGKGGVGKTSISCATAIRLAEQ 35 (589)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred EEEEEeCCCcCHHHHHHHHHHHHHHHC
Confidence 456788999999999988777666544
No 463
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=54.74 E-value=12 Score=34.52 Aligned_cols=34 Identities=15% Similarity=0.066 Sum_probs=22.8
Q ss_pred cHHHHHHHHHhh-cCCCEEEEccCCChHhHHHHHH
Q 010357 43 TKVQAQAIPVIL-SGRHVLVNAATGTGKTVAYLAP 76 (512)
Q Consensus 43 ~~~Q~~~~~~~~-~~~~~lv~~pTGsGKT~~~~~~ 76 (512)
|.-+.+.+...+ .++.++|.||.|+|||......
T Consensus 17 R~~el~~L~~~l~~~~~v~i~G~~G~GKT~Ll~~~ 51 (350)
T 2qen_A 17 REEESRKLEESLENYPLTLLLGIRRVGKSSLLRAF 51 (350)
T ss_dssp CHHHHHHHHHHHHHCSEEEEECCTTSSHHHHHHHH
T ss_pred hHHHHHHHHHHHhcCCeEEEECCCcCCHHHHHHHH
Confidence 444444444333 4578899999999999765443
No 464
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=54.60 E-value=25 Score=37.05 Aligned_cols=95 Identities=13% Similarity=0.113 Sum_probs=57.7
Q ss_pred CCchHHHHHHHHHhhhcccc---CceEEEEeecchhhhhHHHhhhhhcCCCCCCChhHHHhhhhccceeeecCCCCHHHH
Q 010357 299 CGSRLAVLLSILKHLFDTEV---SQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDR 375 (512)
Q Consensus 299 ~~~k~~~l~~~l~~~~~~~~---~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~l~g~~~~~~r 375 (512)
...|.....-.+...+...+ +.++||.++++..+..+.+.++..... .+..+..++|+.+...+
T Consensus 273 GsGKTl~~~~~i~~~l~~~~~~~~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~-------------~~~~v~~~~g~~~~~~~ 339 (797)
T 4a2q_A 273 GSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFER-------------QGYSVQGISGENFSNVS 339 (797)
T ss_dssp TSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGG-------------GTCCEEEECCC-----C
T ss_pred CChHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHhccc-------------CCceEEEEeCCcchhhh
Confidence 45666555555544443333 679999999999999888888765211 16788999999865544
Q ss_pred HHHHHhhhcCCCcEEEeecc-----cccC-C-CCCCCcEEEE
Q 010357 376 RTTFGAFKTEKKALLLSTDV-----AARG-L-DFPKVKCIIQ 410 (512)
Q Consensus 376 ~~~~~~f~~~~~~vLvaT~~-----~~~G-l-dip~~~~VI~ 410 (512)
...+ . +..+|+|+|.- +..+ + .+.++++||.
T Consensus 340 ~~~~---~-~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iVi 377 (797)
T 4a2q_A 340 VEKV---I-EDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIF 377 (797)
T ss_dssp HHHH---H-HTCSEEEECHHHHHHHHHSSSCCCGGGCSEEEE
T ss_pred HHHh---h-CCCCEEEEchHHHHHHHHhccccccccCCEEEE
Confidence 3222 1 24689999953 2222 3 4556787774
No 465
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=54.51 E-value=8.5 Score=34.80 Aligned_cols=18 Identities=17% Similarity=0.512 Sum_probs=14.0
Q ss_pred CEEEEccCCChHhHHHHH
Q 010357 58 HVLVNAATGTGKTVAYLA 75 (512)
Q Consensus 58 ~~lv~~pTGsGKT~~~~~ 75 (512)
-+.+.||+|||||..+-.
T Consensus 33 ii~I~G~sGsGKSTla~~ 50 (290)
T 1odf_A 33 FIFFSGPQGSGKSFTSIQ 50 (290)
T ss_dssp EEEEECCTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 356899999999976543
No 466
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=54.24 E-value=25 Score=33.16 Aligned_cols=34 Identities=21% Similarity=0.309 Sum_probs=26.4
Q ss_pred CcHHHHHHHHHhh---cCCCEEEEccCCChHhHHHHH
Q 010357 42 PTKVQAQAIPVIL---SGRHVLVNAATGTGKTVAYLA 75 (512)
Q Consensus 42 ~~~~Q~~~~~~~~---~~~~~lv~~pTGsGKT~~~~~ 75 (512)
|-..-.++++.+. .|+..++.++.|+|||.....
T Consensus 158 ~~~tGiraID~l~PigrGQR~lIfg~~g~GKT~Ll~~ 194 (427)
T 3l0o_A 158 PKIYSTRLIDLFAPIGKGQRGMIVAPPKAGKTTILKE 194 (427)
T ss_dssp TTCHHHHHHHHHSCCBTTCEEEEEECTTCCHHHHHHH
T ss_pred chhccchhhhhcccccCCceEEEecCCCCChhHHHHH
Confidence 4455557777765 689999999999999987744
No 467
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=54.20 E-value=14 Score=31.46 Aligned_cols=97 Identities=11% Similarity=0.070 Sum_probs=56.3
Q ss_pred chHHH-HHHHHHhhhccccCceEEEEeecchhhhhHHHhhhhhcCCCCCCChhHHHhhhhccceeeecCCCCHHHHHHHH
Q 010357 301 SRLAV-LLSILKHLFDTEVSQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTF 379 (512)
Q Consensus 301 ~k~~~-l~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~l~g~~~~~~r~~~~ 379 (512)
.|... +...+..+.....+.+++|.++++..+..+++.+.+....... ..+..+..++|+.+.....
T Consensus 53 GKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~---------~~~~~~~~~~g~~~~~~~~--- 120 (219)
T 1q0u_A 53 GKTHAYLLPIMEKIKPERAEVQAVITAPTRELATQIYHETLKITKFCPK---------DRMIVARCLIGGTDKQKAL--- 120 (219)
T ss_dssp HHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHHTTSCG---------GGCCCEEEECCCSHHHHTT---
T ss_pred hHHHHHHHHHHHHHHhCcCCceEEEEcCcHHHHHHHHHHHHHHhhhccc---------ccceEEEEEeCCCCHHHHH---
Confidence 45444 3334444333334568999999999999998888765321100 0145677778876543322
Q ss_pred HhhhcCCCcEEEeecc-----ccc-CCCCCCCcEEEE
Q 010357 380 GAFKTEKKALLLSTDV-----AAR-GLDFPKVKCIIQ 410 (512)
Q Consensus 380 ~~f~~~~~~vLvaT~~-----~~~-Gldip~~~~VI~ 410 (512)
+.+ ....+|+|+|.- +.. .+++..++++|.
T Consensus 121 ~~~-~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lVi 156 (219)
T 1q0u_A 121 EKL-NVQPHIVIGTPGRINDFIREQALDVHTAHILVV 156 (219)
T ss_dssp CCC-SSCCSEEEECHHHHHHHHHTTCCCGGGCCEEEE
T ss_pred HHc-CCCCCEEEeCHHHHHHHHHcCCCCcCcceEEEE
Confidence 122 235689999952 222 345666777664
No 468
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=54.15 E-value=13 Score=34.54 Aligned_cols=33 Identities=18% Similarity=0.271 Sum_probs=23.5
Q ss_pred EEEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEEc
Q 010357 59 VLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLV 100 (512)
Q Consensus 59 ~lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~ 100 (512)
+++.+..|.|||.++...+...... +.+++++-
T Consensus 29 ~v~sgKGGvGKTTvA~~LA~~lA~~---------G~rVLlvD 61 (349)
T 3ug7_A 29 IMFGGKGGVGKTTMSAATGVYLAEK---------GLKVVIVS 61 (349)
T ss_dssp EEEECSSSTTHHHHHHHHHHHHHHS---------SCCEEEEE
T ss_pred EEEeCCCCccHHHHHHHHHHHHHHC---------CCeEEEEe
Confidence 4667889999999887776665543 55566664
No 469
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=54.07 E-value=82 Score=25.38 Aligned_cols=73 Identities=12% Similarity=0.107 Sum_probs=47.3
Q ss_pred CceEEEEcCcHHHHHHHHHHHHHHHhhcCCcceEEEeCCCchHHHH---HHHc-CCCCEEEeCChHHHHHHhhcCCCcCC
Q 010357 93 GTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEK---ARLR-KGISILVATPGRLLDHLKHTSSFLHT 168 (512)
Q Consensus 93 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~---~~~~-~~~~Iiv~Tp~~l~~~l~~~~~~~~~ 168 (512)
+.++||.++++.-+..+++.+... + ..+..+.++....... ..+. +..+|+|+|.- ....+++.
T Consensus 31 ~~~~lVF~~~~~~~~~l~~~L~~~----~-~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~-------~~~Gldi~ 98 (172)
T 1t5i_A 31 FNQVVIFVKSVQRCIALAQLLVEQ----N-FPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNL-------FGRGMDIE 98 (172)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHHT----T-CCEEEECTTSCHHHHHHHHHHHHTTSCSEEEESSC-------CSTTCCGG
T ss_pred CCcEEEEECCHHHHHHHHHHHHhc----C-CCEEEEECCCCHHHHHHHHHHHHCCCCcEEEECCc-------hhcCcchh
Confidence 457999999999999888888765 2 3445566665544332 2333 45899999942 12345555
Q ss_pred ceeEEEEcc
Q 010357 169 NLRWIIFDE 177 (512)
Q Consensus 169 ~~~~lV~DE 177 (512)
.+++||.-+
T Consensus 99 ~~~~Vi~~d 107 (172)
T 1t5i_A 99 RVNIAFNYD 107 (172)
T ss_dssp GCSEEEESS
T ss_pred hCCEEEEEC
Confidence 677777644
No 470
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=53.93 E-value=6 Score=34.84 Aligned_cols=19 Identities=21% Similarity=0.396 Sum_probs=15.9
Q ss_pred cCCCEEEEccCCChHhHHH
Q 010357 55 SGRHVLVNAATGTGKTVAY 73 (512)
Q Consensus 55 ~~~~~lv~~pTGsGKT~~~ 73 (512)
.|+-+.+.||.|+|||...
T Consensus 34 ~Ge~~~i~G~nGsGKSTLl 52 (247)
T 2ff7_A 34 QGEVIGIVGRSGSGKSTLT 52 (247)
T ss_dssp TTCEEEEECSTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 5677889999999999554
No 471
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=53.78 E-value=6.2 Score=35.08 Aligned_cols=19 Identities=32% Similarity=0.445 Sum_probs=16.0
Q ss_pred cCCCEEEEccCCChHhHHH
Q 010357 55 SGRHVLVNAATGTGKTVAY 73 (512)
Q Consensus 55 ~~~~~lv~~pTGsGKT~~~ 73 (512)
.|+-+.+.||.|+|||...
T Consensus 45 ~Ge~~~i~G~nGsGKSTLl 63 (260)
T 2ghi_A 45 SGTTCALVGHTGSGKSTIA 63 (260)
T ss_dssp TTCEEEEECSTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 5777889999999999554
No 472
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=53.70 E-value=8.4 Score=32.65 Aligned_cols=17 Identities=24% Similarity=0.274 Sum_probs=13.9
Q ss_pred CEEEEccCCChHhHHHH
Q 010357 58 HVLVNAATGTGKTVAYL 74 (512)
Q Consensus 58 ~~lv~~pTGsGKT~~~~ 74 (512)
-.++.||+|+|||...-
T Consensus 25 ~~~I~G~NgsGKStil~ 41 (203)
T 3qks_A 25 INLIIGQNGSGKSSLLD 41 (203)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred eEEEEcCCCCCHHHHHH
Confidence 46889999999997643
No 473
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=53.59 E-value=7.6 Score=33.17 Aligned_cols=19 Identities=26% Similarity=0.275 Sum_probs=15.3
Q ss_pred CEEEEccCCChHhHHHHHH
Q 010357 58 HVLVNAATGTGKTVAYLAP 76 (512)
Q Consensus 58 ~~lv~~pTGsGKT~~~~~~ 76 (512)
.+.+.|+.|||||.++-..
T Consensus 6 ~I~i~G~~GSGKST~~~~L 24 (218)
T 1vht_A 6 IVALTGGIGSGKSTVANAF 24 (218)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4788999999999776544
No 474
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=53.52 E-value=9.5 Score=33.16 Aligned_cols=21 Identities=29% Similarity=0.284 Sum_probs=16.6
Q ss_pred CCEEEEccCCChHhHHHHHHH
Q 010357 57 RHVLVNAATGTGKTVAYLAPI 77 (512)
Q Consensus 57 ~~~lv~~pTGsGKT~~~~~~~ 77 (512)
..+.+.+|+|||||..+-..+
T Consensus 10 ~~i~i~G~~GsGKsTla~~la 30 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGLA 30 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 357899999999997765544
No 475
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=53.46 E-value=6 Score=35.50 Aligned_cols=19 Identities=21% Similarity=0.475 Sum_probs=15.7
Q ss_pred cCCCEEEEccCCChHhHHH
Q 010357 55 SGRHVLVNAATGTGKTVAY 73 (512)
Q Consensus 55 ~~~~~lv~~pTGsGKT~~~ 73 (512)
.|.-+.+.||.|||||...
T Consensus 33 ~Ge~~~iiGpnGsGKSTLl 51 (275)
T 3gfo_A 33 RGEVTAILGGNGVGKSTLF 51 (275)
T ss_dssp TTSEEEEECCTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 5677889999999999553
No 476
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=53.14 E-value=6.3 Score=34.21 Aligned_cols=19 Identities=37% Similarity=0.546 Sum_probs=15.9
Q ss_pred cCCCEEEEccCCChHhHHH
Q 010357 55 SGRHVLVNAATGTGKTVAY 73 (512)
Q Consensus 55 ~~~~~lv~~pTGsGKT~~~ 73 (512)
.|+-+.+.||.|+|||...
T Consensus 33 ~Ge~~~i~G~nGsGKSTLl 51 (229)
T 2pze_A 33 RGQLLAVAGSTGAGKTSLL 51 (229)
T ss_dssp TTCEEEEECCTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 5777889999999999553
No 477
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=52.99 E-value=7.7 Score=34.61 Aligned_cols=19 Identities=21% Similarity=0.365 Sum_probs=15.8
Q ss_pred cCCCEEEEccCCChHhHHH
Q 010357 55 SGRHVLVNAATGTGKTVAY 73 (512)
Q Consensus 55 ~~~~~lv~~pTGsGKT~~~ 73 (512)
.|.-+.+.||.|+|||..+
T Consensus 45 ~Ge~~~l~G~NGsGKSTLl 63 (267)
T 2zu0_C 45 PGEVHAIMGPNGSGKSTLS 63 (267)
T ss_dssp TTCEEEEECCTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 5667889999999999654
No 478
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=52.97 E-value=21 Score=35.47 Aligned_cols=97 Identities=11% Similarity=0.097 Sum_probs=57.9
Q ss_pred CCchHHHHHHHHHhhhcccc---CceEEEEeecchhhhhHHHhhhhhcCCCCCCChhHHHhhhhccceeeecCCCCHHHH
Q 010357 299 CGSRLAVLLSILKHLFDTEV---SQKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDR 375 (512)
Q Consensus 299 ~~~k~~~l~~~l~~~~~~~~---~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~l~g~~~~~~r 375 (512)
...|.....-.+...+...+ +.++||.++++..+..+.+.+...... .+..+..++|+.+...+
T Consensus 32 GsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~-------------~~~~~~~~~g~~~~~~~ 98 (556)
T 4a2p_A 32 GSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFER-------------QGYSVQGISGENFSNVS 98 (556)
T ss_dssp TSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGG-------------GTCCEEECCCC-----C
T ss_pred CChHHHHHHHHHHHHHHhCcccCCCeEEEEeCCHHHHHHHHHHHHHHhcc-------------cCceEEEEeCCCCcchh
Confidence 34566554444444433333 678999999999999888888765211 16778889999865544
Q ss_pred HHHHHhhhcCCCcEEEeecc-----cccC-C-CCCCCcEEEEeC
Q 010357 376 RTTFGAFKTEKKALLLSTDV-----AARG-L-DFPKVKCIIQYD 412 (512)
Q Consensus 376 ~~~~~~f~~~~~~vLvaT~~-----~~~G-l-dip~~~~VI~~~ 412 (512)
...+ .. ..+|+|+|.- +..| + ++..+++||.-.
T Consensus 99 ~~~~---~~-~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDE 138 (556)
T 4a2p_A 99 VEKV---IE-DSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDE 138 (556)
T ss_dssp HHHH---HH-HCSEEEECHHHHHHHHHSSSCCCSTTCSEEEEET
T ss_pred HHHh---hC-CCCEEEECHHHHHHHHHhCcccccccCCEEEEEC
Confidence 3222 11 3689999953 2223 3 566788877533
No 479
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=52.76 E-value=36 Score=32.18 Aligned_cols=75 Identities=15% Similarity=0.151 Sum_probs=52.1
Q ss_pred ceEEEEeecchhhhhHHHhhhhhcCCCCCCChhHHHhhhhccceeeecCCCCHHHHHHHHHhhhcCCCcEEEeecc----
Q 010357 320 QKLVVFFSTCDAVDFHYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTDV---- 395 (512)
Q Consensus 320 ~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~l~g~~~~~~r~~~~~~f~~~~~~vLvaT~~---- 395 (512)
.+++|.++++..+..+++.+...... .+..+..++|+.+..+....+ . ...+|+|+|.-
T Consensus 102 ~~~lil~Pt~~L~~q~~~~~~~~~~~-------------~~~~~~~~~g~~~~~~~~~~~---~-~~~~I~v~Tp~~l~~ 164 (417)
T 2i4i_A 102 PISLVLAPTRELAVQIYEEARKFSYR-------------SRVRPCVVYGGADIGQQIRDL---E-RGCHLLVATPGRLVD 164 (417)
T ss_dssp CSEEEECSSHHHHHHHHHHHHHHHTT-------------SSCCEEEECSSSCHHHHHHHH---T-TCCSEEEECHHHHHH
T ss_pred ccEEEECCcHHHHHHHHHHHHHHhCc-------------CCceEEEEECCCCHHHHHHHh---h-CCCCEEEEChHHHHH
Confidence 47999999999999999988775321 156788889988766544332 2 34689999962
Q ss_pred -ccc-CCCCCCCcEEEEe
Q 010357 396 -AAR-GLDFPKVKCIIQY 411 (512)
Q Consensus 396 -~~~-Gldip~~~~VI~~ 411 (512)
+.. .+++..+++||.-
T Consensus 165 ~l~~~~~~~~~~~~iViD 182 (417)
T 2i4i_A 165 MMERGKIGLDFCKYLVLD 182 (417)
T ss_dssp HHHTTSBCCTTCCEEEES
T ss_pred HHHcCCcChhhCcEEEEE
Confidence 222 3566678877753
No 480
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=52.72 E-value=5.8 Score=48.12 Aligned_cols=25 Identities=20% Similarity=0.381 Sum_probs=19.1
Q ss_pred HHHHh-hcCCCEEEEccCCChHhHHH
Q 010357 49 AIPVI-LSGRHVLVNAATGTGKTVAY 73 (512)
Q Consensus 49 ~~~~~-~~~~~~lv~~pTGsGKT~~~ 73 (512)
.+..+ ..+++++++||||+|||...
T Consensus 1296 ll~~ll~~~~pvLL~GptGtGKT~li 1321 (3245)
T 3vkg_A 1296 VLHAWLSEHRPLILCGPPGSGKTMTL 1321 (3245)
T ss_dssp HHHHHHHTTCCCEEESSTTSSHHHHH
T ss_pred HHHHHHHCCCcEEEECCCCCCHHHHH
Confidence 34433 46789999999999999653
No 481
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=52.51 E-value=14 Score=34.41 Aligned_cols=23 Identities=26% Similarity=0.264 Sum_probs=17.5
Q ss_pred CEEEEccCCChHhHHHHHHHHHH
Q 010357 58 HVLVNAATGTGKTVAYLAPIINH 80 (512)
Q Consensus 58 ~~lv~~pTGsGKT~~~~~~~~~~ 80 (512)
.+.+.|++|+|||..+...+...
T Consensus 81 ~I~i~G~~G~GKSTl~~~L~~~l 103 (355)
T 3p32_A 81 RVGITGVPGVGKSTAIEALGMHL 103 (355)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47889999999998766555443
No 482
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=52.45 E-value=14 Score=31.16 Aligned_cols=58 Identities=14% Similarity=0.150 Sum_probs=35.4
Q ss_pred CceEEEEeecchhhhh-HHHhhhhhcCCCCCCChhHHHhhhhccceeeecCCCCHHHHHHHHHhhhcCCCcEEEeec
Q 010357 319 SQKLVVFFSTCDAVDF-HYSLLSEFQWSPHSQPDMELKQLFLRCKTFRLHGNMKQEDRRTTFGAFKTEKKALLLSTD 394 (512)
Q Consensus 319 ~~~~lvf~~~~~~~~~-l~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~l~g~~~~~~r~~~~~~f~~~~~~vLvaT~ 394 (512)
+.+++|+++++..+.. +.+.+...... +..+..++|+.....+..... ...+|+|+|.
T Consensus 82 ~~~~lil~p~~~L~~q~~~~~~~~~~~~--------------~~~v~~~~g~~~~~~~~~~~~----~~~~i~v~T~ 140 (216)
T 3b6e_A 82 PGKVIVLVNKVLLVEQLFRKEFQPFLKK--------------WYRVIGLSGDTQLKISFPEVV----KSCDIIISTA 140 (216)
T ss_dssp CCCEEEEESSHHHHHHHHHHTHHHHHTT--------------TSCEEECCC---CCCCHHHHH----HHCSEEEEEH
T ss_pred CCcEEEEECHHHHHHHHHHHHHHHHhcc--------------CceEEEEeCCcccchhHHhhc----cCCCEEEECH
Confidence 5799999999998877 66666554221 456777888754433221111 1368999985
No 483
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=52.22 E-value=7.9 Score=34.11 Aligned_cols=19 Identities=21% Similarity=0.284 Sum_probs=15.9
Q ss_pred cCCCEEEEccCCChHhHHH
Q 010357 55 SGRHVLVNAATGTGKTVAY 73 (512)
Q Consensus 55 ~~~~~lv~~pTGsGKT~~~ 73 (512)
.|.-+.+.||.|+|||..+
T Consensus 28 ~Ge~~~l~G~nGsGKSTLl 46 (250)
T 2d2e_A 28 KGEVHALMGPNGAGKSTLG 46 (250)
T ss_dssp TTCEEEEECSTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 5677889999999999654
No 484
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=52.17 E-value=8.3 Score=33.95 Aligned_cols=20 Identities=20% Similarity=0.258 Sum_probs=15.6
Q ss_pred CEEEEccCCChHhHHHHHHH
Q 010357 58 HVLVNAATGTGKTVAYLAPI 77 (512)
Q Consensus 58 ~~lv~~pTGsGKT~~~~~~~ 77 (512)
.+.|.|+.|||||.++-...
T Consensus 24 iI~I~G~~GSGKST~a~~L~ 43 (252)
T 1uj2_A 24 LIGVSGGTASGKSSVCAKIV 43 (252)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 46789999999997765443
No 485
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=52.16 E-value=6.2 Score=34.97 Aligned_cols=19 Identities=26% Similarity=0.483 Sum_probs=15.7
Q ss_pred cCCCEEEEccCCChHhHHH
Q 010357 55 SGRHVLVNAATGTGKTVAY 73 (512)
Q Consensus 55 ~~~~~lv~~pTGsGKT~~~ 73 (512)
.|.-+.+.||.|+|||...
T Consensus 32 ~Ge~~~liG~nGsGKSTLl 50 (257)
T 1g6h_A 32 KGDVTLIIGPNGSGKSTLI 50 (257)
T ss_dssp TTCEEEEECSTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 5677889999999999553
No 486
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=52.15 E-value=8.3 Score=36.39 Aligned_cols=23 Identities=26% Similarity=0.237 Sum_probs=17.7
Q ss_pred cCCCEEEEccCCChHhHHHHHHH
Q 010357 55 SGRHVLVNAATGTGKTVAYLAPI 77 (512)
Q Consensus 55 ~~~~~lv~~pTGsGKT~~~~~~~ 77 (512)
.++.+++.||+|+|||..+-..+
T Consensus 168 ~~~~i~l~G~~GsGKSTl~~~l~ 190 (377)
T 1svm_A 168 KKRYWLFKGPIDSGKTTLAAALL 190 (377)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHH
Confidence 56678999999999997654433
No 487
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=52.01 E-value=3 Score=44.02 Aligned_cols=60 Identities=17% Similarity=0.224 Sum_probs=32.8
Q ss_pred cCCcccCCCCHHHHHHHHHhcCCCCCcHHHHHHHH-HhhcCCCEEEEccCCChHhHHHHHHHH
Q 010357 17 SCSFSSLGLHSTLCDQLRERLGFEAPTKVQAQAIP-VILSGRHVLVNAATGTGKTVAYLAPII 78 (512)
Q Consensus 17 ~~~~~~~~l~~~~~~~l~~~~~~~~~~~~Q~~~~~-~~~~~~~~lv~~pTGsGKT~~~~~~~~ 78 (512)
..+|+..+-.+.+.+.+.+...+. ..+...... .+..++.+++.||+|+|||..+-..+-
T Consensus 473 ~v~~~di~gl~~vk~~l~~~v~~~--~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~ 533 (806)
T 1ypw_A 473 QVTWEDIGGLEDVKRELQELVQYP--VEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIAN 533 (806)
T ss_dssp CCSSCSSSCCCCHHHHHHTTTTSS--SSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHH
T ss_pred cccccccccchhhhhhHHHHHHhh--hhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHH
Confidence 445666655556666665432221 100000000 122456799999999999987655443
No 488
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=51.96 E-value=5.5 Score=33.88 Aligned_cols=19 Identities=16% Similarity=0.242 Sum_probs=15.0
Q ss_pred EEEEccCCChHhHHHHHHH
Q 010357 59 VLVNAATGTGKTVAYLAPI 77 (512)
Q Consensus 59 ~lv~~pTGsGKT~~~~~~~ 77 (512)
+++.|+.|||||..+-..+
T Consensus 3 I~i~G~~GsGKsTl~~~L~ 21 (214)
T 1gtv_A 3 IAIEGVDGAGKRTLVEKLS 21 (214)
T ss_dssp EEEEEEEEEEHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHH
Confidence 6789999999997765443
No 489
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=51.92 E-value=1.9e+02 Score=28.72 Aligned_cols=77 Identities=17% Similarity=0.141 Sum_probs=51.5
Q ss_pred CceEEEEcCcHHHHHHHHHHHHHHHhhcCCcceEEEeCCCchHHHH---HHH-cCCCCEEEeCChHHHHHHhhcCCCcCC
Q 010357 93 GTFALVLVPTRELCLQVYEILHKLLHRFHWIVPGYVMGGENRSKEK---ARL-RKGISILVATPGRLLDHLKHTSSFLHT 168 (512)
Q Consensus 93 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~---~~~-~~~~~Iiv~Tp~~l~~~l~~~~~~~~~ 168 (512)
+.++||.++++.-+..+++.+...... ...+..++++....... ..+ ....+|+|+|. .+. ..+++.
T Consensus 288 ~~~~iVF~~t~~~~~~l~~~L~~~~~~--~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLVaT~-----~~~--~GiDip 358 (579)
T 3sqw_A 288 NYKAIIFAPTVKFTSFLCSILKNEFKK--DLPILEFHGKITQNKRTSLVKRFKKDESGILVCTD-----VGA--RGMDFP 358 (579)
T ss_dssp CCEEEEECSSHHHHHHHHHHHHHHHTT--TSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECG-----GGT--SSCCCT
T ss_pred CCcEEEECCcHHHHHHHHHHHHHhhcC--CCcEEEecCCCCHHHHHHHHHHhhcCCCeEEEEcc-----hhh--cCCCcc
Confidence 567999999999999999988876431 23455566665544332 222 24588999994 222 456666
Q ss_pred ceeEEEEcch
Q 010357 169 NLRWIIFDEA 178 (512)
Q Consensus 169 ~~~~lV~DEa 178 (512)
++++||.-..
T Consensus 359 ~v~~VI~~~~ 368 (579)
T 3sqw_A 359 NVHEVLQIGV 368 (579)
T ss_dssp TCCEEEEESC
T ss_pred cCCEEEEcCC
Confidence 7888886553
No 490
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=51.85 E-value=6.6 Score=35.01 Aligned_cols=19 Identities=32% Similarity=0.510 Sum_probs=15.7
Q ss_pred cCCCEEEEccCCChHhHHH
Q 010357 55 SGRHVLVNAATGTGKTVAY 73 (512)
Q Consensus 55 ~~~~~lv~~pTGsGKT~~~ 73 (512)
.|+-+.+.||.|+|||...
T Consensus 36 ~Ge~~~liG~nGsGKSTLl 54 (266)
T 4g1u_C 36 SGEMVAIIGPNGAGKSTLL 54 (266)
T ss_dssp TTCEEEEECCTTSCHHHHH
T ss_pred CCCEEEEECCCCCcHHHHH
Confidence 5677889999999999553
No 491
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=51.62 E-value=11 Score=37.58 Aligned_cols=29 Identities=34% Similarity=0.473 Sum_probs=21.7
Q ss_pred hcCCCEEEEccCCChHhHHHHHHHHHHHh
Q 010357 54 LSGRHVLVNAATGTGKTVAYLAPIINHLQ 82 (512)
Q Consensus 54 ~~~~~~lv~~pTGsGKT~~~~~~~~~~~~ 82 (512)
-.|+.+++.+|+|+|||..+...++.-+.
T Consensus 37 ~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~ 65 (525)
T 1tf7_A 37 PIGRSTLVSGTSGTGKTLFSIQFLYNGII 65 (525)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 36778899999999999877665444443
No 492
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=51.40 E-value=5.9 Score=34.75 Aligned_cols=19 Identities=16% Similarity=0.413 Sum_probs=15.7
Q ss_pred cCCCEEEEccCCChHhHHH
Q 010357 55 SGRHVLVNAATGTGKTVAY 73 (512)
Q Consensus 55 ~~~~~lv~~pTGsGKT~~~ 73 (512)
.|+-+.+.||.|+|||...
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl 45 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTIF 45 (243)
T ss_dssp TTEEEEEECCTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 5667889999999999553
No 493
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=50.72 E-value=6.8 Score=33.88 Aligned_cols=18 Identities=33% Similarity=0.578 Sum_probs=15.1
Q ss_pred cCCCEEEEccCCChHhHH
Q 010357 55 SGRHVLVNAATGTGKTVA 72 (512)
Q Consensus 55 ~~~~~lv~~pTGsGKT~~ 72 (512)
.|.-+.+.||.|+|||..
T Consensus 29 ~Ge~~~iiG~nGsGKSTL 46 (224)
T 2pcj_A 29 KGEFVSIIGASGSGKSTL 46 (224)
T ss_dssp TTCEEEEEECTTSCHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 566778999999999954
No 494
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=50.64 E-value=8.7 Score=34.78 Aligned_cols=20 Identities=25% Similarity=0.248 Sum_probs=15.7
Q ss_pred CEEEEccCCChHhHHHHHHH
Q 010357 58 HVLVNAATGTGKTVAYLAPI 77 (512)
Q Consensus 58 ~~lv~~pTGsGKT~~~~~~~ 77 (512)
-+++.|++|||||..+-..+
T Consensus 4 ~I~l~G~~GsGKST~a~~L~ 23 (301)
T 1ltq_A 4 IILTIGCPGSGKSTWAREFI 23 (301)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 46899999999998765443
No 495
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=50.54 E-value=11 Score=41.81 Aligned_cols=62 Identities=16% Similarity=0.229 Sum_probs=38.9
Q ss_pred CccCCcccCCCC-HHHHHHHHHhcCCCCC----cHHHHHHHHHhh---cCCCEEEEccCCChHhHHHHHHH
Q 010357 15 FASCSFSSLGLH-STLCDQLRERLGFEAP----TKVQAQAIPVIL---SGRHVLVNAATGTGKTVAYLAPI 77 (512)
Q Consensus 15 ~~~~~~~~~~l~-~~~~~~l~~~~~~~~~----~~~Q~~~~~~~~---~~~~~lv~~pTGsGKT~~~~~~~ 77 (512)
.+.+||..+++. ++....+... ....+ +.+=..|+..++ .++.+|+.|.+|+|||.+.=..+
T Consensus 121 i~vNP~~~l~~y~~~~~~~y~~~-~~~~~~PHi~aia~~ay~~m~~~~~~Q~i~isGeSGaGKTe~~k~~~ 190 (1184)
T 1i84_S 121 VVINPYKQLPIYSEKIIDMYKGK-KRHEMPPHIYAIADTAYRSMLQDREDQSILCTGESGAGKTENTKKVI 190 (1184)
T ss_dssp EEECCCSCCSCCSHHHHHHHSSC-CSSSSCCCHHHHHHHHHHHHHHHTCCEEEECCCSTTSSTTHHHHHHH
T ss_pred eeeCCCcCCCCCCHHHHHHhcCc-ccccCCccHhhhHHHHHHHHHhcCCCcEEEEecCCCCCccHHHHHHH
Confidence 577889888865 4445444322 22222 333445665555 34568999999999998865544
No 496
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=50.29 E-value=11 Score=31.61 Aligned_cols=20 Identities=15% Similarity=0.207 Sum_probs=15.9
Q ss_pred CEEEEccCCChHhHHHHHHH
Q 010357 58 HVLVNAATGTGKTVAYLAPI 77 (512)
Q Consensus 58 ~~lv~~pTGsGKT~~~~~~~ 77 (512)
.+.+.++.|||||.++-..+
T Consensus 4 ~i~i~G~~GsGKst~~~~la 23 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVA 23 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 46789999999998765544
No 497
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=50.25 E-value=16 Score=31.53 Aligned_cols=31 Identities=26% Similarity=0.285 Sum_probs=20.7
Q ss_pred EEEccCCChHhHHHHHHHHHHHhhcCCCCCCCCCceEEEE
Q 010357 60 LVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVL 99 (512)
Q Consensus 60 lv~~pTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil 99 (512)
+..+..|.|||.++...+...... +.+++++
T Consensus 7 v~s~kgGvGKTt~a~~LA~~la~~---------g~~Vlli 37 (237)
T 1g3q_A 7 IVSGKGGTGKTTVTANLSVALGDR---------GRKVLAV 37 (237)
T ss_dssp EECSSTTSSHHHHHHHHHHHHHHT---------TCCEEEE
T ss_pred EecCCCCCCHHHHHHHHHHHHHhc---------CCeEEEE
Confidence 345568999998887766555433 5556665
No 498
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=50.24 E-value=7.4 Score=34.03 Aligned_cols=19 Identities=37% Similarity=0.532 Sum_probs=15.7
Q ss_pred cCCCEEEEccCCChHhHHH
Q 010357 55 SGRHVLVNAATGTGKTVAY 73 (512)
Q Consensus 55 ~~~~~lv~~pTGsGKT~~~ 73 (512)
.|.-+.+.||.|+|||...
T Consensus 31 ~Ge~~~l~G~nGsGKSTLl 49 (240)
T 1ji0_A 31 RGQIVTLIGANGAGKTTTL 49 (240)
T ss_dssp TTCEEEEECSTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 5677889999999999553
No 499
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=50.13 E-value=10 Score=32.96 Aligned_cols=24 Identities=8% Similarity=0.196 Sum_probs=18.4
Q ss_pred hcCCCEEEEccCCChHhHHHHHHH
Q 010357 54 LSGRHVLVNAATGTGKTVAYLAPI 77 (512)
Q Consensus 54 ~~~~~~lv~~pTGsGKT~~~~~~~ 77 (512)
..+..+.+.++.|||||.++-..+
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~ 37 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIA 37 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHH
Confidence 345568899999999998765544
No 500
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=50.04 E-value=8.2 Score=33.78 Aligned_cols=22 Identities=18% Similarity=0.104 Sum_probs=16.3
Q ss_pred cCCCEEEEccCCChHhHHHHHH
Q 010357 55 SGRHVLVNAATGTGKTVAYLAP 76 (512)
Q Consensus 55 ~~~~~lv~~pTGsGKT~~~~~~ 76 (512)
.+.-+-+.||.|||||..+-+.
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L 45 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKI 45 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHH
Confidence 3445678999999999775443
Done!