Query 010358
Match_columns 512
No_of_seqs 393 out of 2598
Neff 8.4
Searched_HMMs 29240
Date Mon Mar 25 05:04:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010358.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010358hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xut_A Proton/peptide symporte 99.9 1.1E-26 3.8E-31 248.1 18.5 388 68-498 11-481 (524)
2 4aps_A DI-OR tripeptide H+ sym 99.9 1.3E-23 4.6E-28 222.2 30.1 184 65-281 9-198 (491)
3 3o7q_A L-fucose-proton symport 99.9 3.2E-19 1.1E-23 185.3 31.2 181 65-278 22-228 (438)
4 1pw4_A Glycerol-3-phosphate tr 99.8 1.2E-19 4E-24 189.1 23.6 177 67-280 26-207 (451)
5 4gc0_A D-xylose-proton symport 99.8 6.1E-18 2.1E-22 178.5 20.4 149 105-271 55-212 (491)
6 2gfp_A EMRD, multidrug resista 99.8 1.4E-18 4.8E-23 177.0 12.1 167 72-274 3-169 (375)
7 2cfq_A Lactose permease; trans 99.6 5.2E-16 1.8E-20 161.1 5.4 169 70-269 8-177 (417)
8 1pw4_A Glycerol-3-phosphate tr 99.5 1.8E-13 6.1E-18 142.1 18.9 178 69-278 252-432 (451)
9 3o7q_A L-fucose-proton symport 99.4 1.4E-11 4.7E-16 127.4 20.1 167 70-274 259-427 (438)
10 2cfq_A Lactose permease; trans 99.4 5.9E-12 2E-16 130.4 16.5 173 72-279 223-399 (417)
11 4aps_A DI-OR tripeptide H+ sym 99.2 4.6E-11 1.6E-15 125.7 12.7 186 70-282 284-474 (491)
12 4gc0_A D-xylose-proton symport 99.1 1E-08 3.5E-13 107.5 23.2 185 70-285 278-468 (491)
13 2gfp_A EMRD, multidrug resista 98.9 1E-09 3.5E-14 111.2 4.5 165 69-267 199-364 (375)
14 2xut_A Proton/peptide symporte 98.2 1.2E-06 4.3E-11 92.5 7.5 90 186-281 404-504 (524)
No 1
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.94 E-value=1.1e-26 Score=248.13 Aligned_cols=388 Identities=22% Similarity=0.326 Sum_probs=246.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcC------CChhHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHH
Q 010358 68 WIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMH------KSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAI 141 (512)
Q Consensus 68 ~~~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~------~s~~~a~~~~~~~~~~~~l~~l~~G~LsD~~~GR~~~i~~ 141 (512)
++.++.+.+..++..+++|++..+++.|+++++| ++..+++++.+.+.++..++.+++|+++||++|||+++.+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~ 90 (524)
T 2xut_A 11 PRQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILW 90 (524)
T ss_dssp --CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHH
Confidence 4456678888999999999999999999999999 9999999999999999999999999999996599999999
Q ss_pred HHHHHHHHHHHHhhhhcccccCCCCCcccccccccCCCCCcchh-hHHHHHHHHHHHHHhhcChhhhhhhHhhccCCCCC
Q 010358 142 FTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSW-QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERS 220 (512)
Q Consensus 142 ~~~l~~ig~~~l~~~~~~~~l~~~~~~~~~~~~~~~~c~~~~~~-~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~f~~~~ 220 (512)
+.++..++.++++++ . +...++++|++.|++.+...++..++++|.+|+++
T Consensus 91 ~~~~~~~~~~~~~~~----------------------------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~ 142 (524)
T 2xut_A 91 LSLIYCVGHAFLAIF----------------------------EHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSN 142 (524)
T ss_dssp HHHHHHHHHHHHHHT----------------------------SSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTT
T ss_pred HHHHHHHHHHHHHHh----------------------------cccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccc
Confidence 999999998888776 3 56788899999999999999999999999999877
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHhHHHHhhhhccchHHHHHHHHHHHHHHHHHHHhhcccccccCCCCCchHHHHHHH
Q 010358 221 KDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVL 300 (512)
Q Consensus 221 ~~~~~~r~~~~~~~~~~~~lg~~l~p~i~~~l~~~~gw~~~f~i~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~v~ 300 (512)
.+ .+...+++++.+.++|..++|.+++++.+..||++.|++.+++.+++++++++..+..+.+++++++..+..+.+
T Consensus 143 r~---~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (524)
T 2xut_A 143 KS---LAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWLGRKRYIHMPPEPKDPHGFLPVI 219 (524)
T ss_dssp TT---HHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHHSSSSSCCCCC-------------
T ss_pred hH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCccchhHHHHH
Confidence 11 124556679999999999999999999999999999999888877766666554444443333333333333333
Q ss_pred HHHHhhhccccCCcccccccccCCCcccccCCcccccCCccchhhHHHh---hhccccCCCCCc-------ccccchhHH
Q 010358 301 VAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAAL---ELKEDVINPSPW-------KLCTVTQVE 370 (512)
Q Consensus 301 ~~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~---~~~~~~~~~~~w-------~~~~~~~ve 370 (512)
..+.++++.+.+ +... ............. ..+.+....+..+.. ...+ ...+.+| +.++..+++
T Consensus 220 ~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 293 (524)
T 2xut_A 220 RSALLTKVEGKG-NIGL-VLALIGGVSAAYA---LVNIPTLGIVAGLCCAMVLVMG-FVGAGASLQLERARKSHPDAAVD 293 (524)
T ss_dssp -------CTTHH-HHHH-HHHHHHHHHHHHT---GGGTTTTCSSHHHHHHHHHHHH-HHHTGGGTHHHHSCCSCCSSSST
T ss_pred HHHHhhhhcccC-ccch-hhhhhhhhhhhhh---hcccchhhhhhhhhhhhhhhhc-ccccchhhHHhhhhccccHhHHH
Confidence 333333221100 0000 0000000000000 000000000000000 0000 0001122 112222334
Q ss_pred HHHHHHhhcchhhhhHHHHHHhhccchHHHHHHhhhccc----c-------------------c------CC--CCCChh
Q 010358 371 EVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTH----M-------------------G------HP--RGASQL 419 (512)
Q Consensus 371 ~~k~~~~~l~v~~~~~~~~~~~~q~~t~~~~q~~~~~~~----~-------------------~------~~--~~~~~~ 419 (512)
+.|+++..+++++....++..+.+..+.+..+..+++.. . + ++ ++.+..
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (524)
T 2xut_A 294 GVRSVLRILVLFALVTPFWSLFDQKASTWILQANDMVKPQWFEPAMMQALNPLLVMLLIPFNNFVLYPAIERMGVKLTAL 373 (524)
T ss_dssp TTTTHHHHHHHHTTSHHHHTTTSSTTTHHHHHHHHSCCCSSSCHHHHHTTSGGGHHHHGGGTTTC------------CCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchhhHHhHHhcCCCeeecHHHHHHHHHHHHHHhHHHHHhhhHHHHHhcCCCCChH
Confidence 566677777777777778888888877777776555431 1 1 11 123344
Q ss_pred HHHHHHHHHHHHHHHHH----------------------------------HHHHHHHhhcCccchhHHHHHHHHHhHHH
Q 010358 420 QRVGIGLAVSILSVIWA----------------------------------GLLEFLYEEAPDAMKSIGSAYAALAGGLG 465 (512)
Q Consensus 420 ~~i~iG~~~~~ls~~~a----------------------------------~~~e~~~~~~P~~~~~~~~g~~~~~~~ig 465 (512)
+++.+|+++.+++++.. ....+..+.+|+++||+++|+++...++|
T Consensus 374 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g 453 (524)
T 2xut_A 374 RKMGAGIAITGLSWIVVGTIQLMMDGGSALSIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVG 453 (524)
T ss_dssp HHHHTHHHHHHHHHHTTTTTTTTTTTTCCCCSHHHHHHHHHHHHHHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHH
Confidence 55666666555543310 12234568899999999999999999999
Q ss_pred HHHHHHHHHHhhhhcCCCCCCCCCCCCC-Ccccc
Q 010358 466 CFAASILNSIIKSVTGNPKKGQPNWLAQ-NINTD 498 (512)
Q Consensus 466 ~~l~~~l~~~v~~~t~~~~~~~~~w~~~-~~n~~ 498 (512)
+.+++.+.+.+.+.++ .+|+++ ++|.+
T Consensus 454 ~~~g~~~~g~~~~~~~------~~~~~~~~~~~~ 481 (524)
T 2xut_A 454 NLWVLLANVSVKSPTV------TEQIVQTGMSVT 481 (524)
T ss_dssp HHHHHHHHHHTTSCHH------HHHHHHHHSCHH
T ss_pred HHHHHHHHHHhccccc------cccccccccccc
Confidence 9999999998876443 247654 34443
No 2
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.93 E-value=1.3e-23 Score=222.17 Aligned_cols=184 Identities=23% Similarity=0.400 Sum_probs=163.8
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHh-----cCCChhHHHHHHHHHHHHHHHHHHHHHHHHhh-ccchHHH
Q 010358 65 TGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYV-----MHKSFADSSNAVNNFLGISQASSVLGGFLADA-YLGRYWT 138 (512)
Q Consensus 65 ~~~~~~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~-----l~~s~~~a~~~~~~~~~~~~l~~l~~G~LsD~-~~GR~~~ 138 (512)
+++++.++.+.+..++..+++|++..+++.|+++. +|++..+.+++.+.+.++..++.+++|+++|| + |||++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~-g~r~~ 87 (491)
T 4aps_A 9 FGQPLGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRII-GARPA 87 (491)
T ss_dssp --CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-CHHHH
T ss_pred hccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-cchHH
Confidence 44566888899999999999999999999999998 99999999999999999999999999999999 6 99999
Q ss_pred HHHHHHHHHHHHHHHhhhhcccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhhcChhhhhhhHhhccCCC
Q 010358 139 IAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDE 218 (512)
Q Consensus 139 i~~~~~l~~ig~~~l~~~~~~~~l~~~~~~~~~~~~~~~~c~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~f~~ 218 (512)
+.++.++..++.++++++ .+...++++|++.|+|.+...++..++++|++|+
T Consensus 88 ~~~~~~~~~~~~~~~~~~----------------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~ 139 (491)
T 4aps_A 88 VFWGGVLIMLGHIVLALP----------------------------FGASALFGSIILIIIGTGFLKPNVSTLVGTLYDE 139 (491)
T ss_dssp HHHHHHHHHHHHHHHHSC----------------------------CSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSS
T ss_pred HHHHHHHHHHHHHHHHHh----------------------------hhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCc
Confidence 999999999998888775 4567788999999999999999999999999998
Q ss_pred CChhhhhhhhhHHHHHHHHHHHHHHHHhHHHHhhhhccchHHHHHHHHHHHHHHHHHHHhhcc
Q 010358 219 RSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTP 281 (512)
Q Consensus 219 ~~~~~~~~r~~~~~~~~~~~~lg~~l~p~i~~~l~~~~gw~~~f~i~~~~~~i~~i~~~~~~~ 281 (512)
++.+ |+.++++++.+.++|..++|.+++++.+..||++.|++.++..+++++++++..+
T Consensus 140 ~~~~----r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~ 198 (491)
T 4aps_A 140 HDRR----RDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGK 198 (491)
T ss_dssp CTTH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccc----ceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 7633 7788999999999999999999999999999999999988777766666554433
No 3
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.86 E-value=3.2e-19 Score=185.26 Aligned_cols=181 Identities=12% Similarity=0.006 Sum_probs=150.2
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHH
Q 010358 65 TGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTT 144 (512)
Q Consensus 65 ~~~~~~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~l~~l~~G~LsD~~~GR~~~i~~~~~ 144 (512)
+++++.++.+.+..++..+..+.+.. +..++.+++|.+..+.+++.+.+.++..++.+++|+++||+ |||+++.++.+
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~-g~r~~l~~~~~ 99 (438)
T 3o7q_A 22 RSYIIPFALLCSLFFLWAVANNLNDI-LLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKL-SYKAGIITGLF 99 (438)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHS-CHHHHHHHHHH
T ss_pred hHhHHHHHHHHHHHHHHHHHHHhHHH-HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-cchHHHHHHHH
Confidence 34566667777777777777654444 45567889999999999999999999999999999999998 99999999999
Q ss_pred HHHHHHHHHhhhhcccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhhcChhhhhhhHhhccCCCCChhhh
Q 010358 145 IYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYK 224 (512)
Q Consensus 145 l~~ig~~~l~~~~~~~~l~~~~~~~~~~~~~~~~c~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~ 224 (512)
+..++.+++...... .+...++++|++.|++.+...+...++++|.+|+++
T Consensus 100 ~~~~~~~~~~~~~~~-------------------------~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~---- 150 (438)
T 3o7q_A 100 LYALGAALFWPAAEI-------------------------MNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESS---- 150 (438)
T ss_dssp HHHHHHHHHHHHHHT-------------------------TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTT----
T ss_pred HHHHHHHHHHhcccc-------------------------ccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchh----
Confidence 999998888332110 467889999999999999999999999999999988
Q ss_pred hhhhhHHHHHHHHHHHHHHHHhHHHHhhh-hccc-------------------------hHHHHHHHHHHHHHHHHHHHh
Q 010358 225 THLDRFFNFFYLSVTVGAIVAFTLVVYIQ-MEHG-------------------------WGSAFGALAIAMGISNMLFFI 278 (512)
Q Consensus 225 ~~r~~~~~~~~~~~~lg~~l~p~i~~~l~-~~~g-------------------------w~~~f~i~~~~~~i~~i~~~~ 278 (512)
|+..+++++.+.++|..++|.+++++. +..+ |++.|++.++..++..++++.
T Consensus 151 --r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~ 228 (438)
T 3o7q_A 151 --GHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIML 228 (438)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999988 5554 999998777665555444433
No 4
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.84 E-value=1.2e-19 Score=189.06 Aligned_cols=177 Identities=13% Similarity=0.054 Sum_probs=151.3
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHH
Q 010358 67 GWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIY 146 (512)
Q Consensus 67 ~~~~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~l~~l~~G~LsD~~~GR~~~i~~~~~l~ 146 (512)
+|+.++.+.+..++..+..+.+...++. +.+++ .+..+.+++.+.+.++..++.+++|+++||+ |||+++.++.++.
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-g~r~~l~~~~~~~ 102 (451)
T 1pw4_A 26 RWQIFLGIFFGYAAYYLVRKNFALAMPY-LVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRS-NPRVFLPAGLILA 102 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSHHHHHHH-TTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhc-CchHHHHHHHHHH
Confidence 4666777777777777777666665554 45567 9999999999999999999999999999998 9999999999999
Q ss_pred HHHHHHHhh----hhcccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhhcChhhhhhhHhhccCCCCChh
Q 010358 147 LAGLTGITL----CATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKD 222 (512)
Q Consensus 147 ~ig~~~l~~----~~~~~~l~~~~~~~~~~~~~~~~c~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~f~~~~~~ 222 (512)
.++.+++++ + .+...++++|++.|++.+...+...++++|.+|+++
T Consensus 103 ~~~~~~~~~~~~~~----------------------------~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~-- 152 (451)
T 1pw4_A 103 AAVMLFMGFVPWAT----------------------------SSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKE-- 152 (451)
T ss_dssp HHHHHHHHHCHHHH----------------------------SSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTH--
T ss_pred HHHHHHHHhhhhcc----------------------------ccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchh--
Confidence 999988887 4 456778899999999999999999999999999877
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHhHHHHhhhhccc-hHHHHHHHHHHHHHHHHHHHhhc
Q 010358 223 YKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHG-WGSAFGALAIAMGISNMLFFIGT 280 (512)
Q Consensus 223 ~~~~r~~~~~~~~~~~~lg~~l~p~i~~~l~~~~g-w~~~f~i~~~~~~i~~i~~~~~~ 280 (512)
|++.+++++.+.++|.+++|.+++++.+..| |++.|++.+++.++..++.++..
T Consensus 153 ----r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~ 207 (451)
T 1pw4_A 153 ----RGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMM 207 (451)
T ss_dssp ----HHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHC
T ss_pred ----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999999999888898 99999998877766555544433
No 5
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.78 E-value=6.1e-18 Score=178.51 Aligned_cols=149 Identities=13% Similarity=0.161 Sum_probs=113.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhhhhcccccCCCCCcccccccccCCC-CCcc
Q 010358 105 ADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSC-EPAK 183 (512)
Q Consensus 105 ~~a~~~~~~~~~~~~l~~l~~G~LsD~~~GR~~~i~~~~~l~~ig~~~l~~~~~~~~l~~~~~~~~~~~~~~~~c-~~~~ 183 (512)
...+++.+.+.++..++++++|+++||+ |||+++.++.+++.++.++.+++......... ... ...-
T Consensus 55 ~~~g~~~s~~~~G~~iG~~~~G~laDr~-GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~-----------~~~~~~~~ 122 (491)
T 4gc0_A 55 SLLGFCVASALIGCIIGGALGGYCSNRF-GRRDSLKIAAVLFFISGVGSAWPELGFTSINP-----------DNTVPVYL 122 (491)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSS-----------SSSCCGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcc-----------hhHHHHHH
Confidence 3456788889999999999999999998 99999999999999999988864211000000 000 0000
Q ss_pred hhhHHHHHHHHHHHHHhhcChhhhhhhHhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhHHHHhhhhc--------
Q 010358 184 SWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQME-------- 255 (512)
Q Consensus 184 ~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~lg~~l~p~i~~~l~~~-------- 255 (512)
..+...++++|++.|+|.|+..+..+++++|..|++. |+...++++.+..+|..+++.++..+...
T Consensus 123 a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~------rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 196 (491)
T 4gc0_A 123 AGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHI------RGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNT 196 (491)
T ss_dssp GGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGG------HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTT
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHh------hhhhHHhhhhhhhhhhhhhhhcchhhccccccccccc
Confidence 1578899999999999999999999999999999887 99999999999999999888887666432
Q ss_pred cchHHHHHHHHHHHHH
Q 010358 256 HGWGSAFGALAIAMGI 271 (512)
Q Consensus 256 ~gw~~~f~i~~~~~~i 271 (512)
.+|++.+.+..+..++
T Consensus 197 ~~~~~~~~~~~~~~~~ 212 (491)
T 4gc0_A 197 DGWRYMFASECIPALL 212 (491)
T ss_dssp THHHHHHHTTHHHHHH
T ss_pred hhhHHHhhhhhhhhhh
Confidence 3466666655544433
No 6
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.76 E-value=1.4e-18 Score=176.99 Aligned_cols=167 Identities=13% Similarity=0.115 Sum_probs=144.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHH
Q 010358 72 LFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLT 151 (512)
Q Consensus 72 ~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~l~~l~~G~LsD~~~GR~~~i~~~~~l~~ig~~ 151 (512)
+.+.+..++..+......+.++. +.+++|.+..+.+.+.+.+..+..++.++.|+++||+ |||+++.++.++..++.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~ 80 (375)
T 2gfp_A 3 LMLVLLVAVGQMAQTIYIPAIAD-MARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRV-GRRPVILVGMSIFMLATL 80 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-HHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTS-CCCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhHH-HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCchhHHHHHHHHHHHHH
Confidence 34455566666666555555554 4678999999999999999999999999999999998 999999999999999988
Q ss_pred HHhhhhcccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhhcChhhhhhhHhhccCCCCChhhhhhhhhHH
Q 010358 152 GITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFF 231 (512)
Q Consensus 152 ~l~~~~~~~~l~~~~~~~~~~~~~~~~c~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~ 231 (512)
++.+. .+...++++|++.|++.+...+...+++.|.+|+++ |++.+
T Consensus 81 ~~~~~----------------------------~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~ 126 (375)
T 2gfp_A 81 VAVTT----------------------------SSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQ------LRHAN 126 (375)
T ss_dssp HHHHH----------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS------CCSHH
T ss_pred HHHHh----------------------------ccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHH------HHHHH
Confidence 88876 577889999999999999999999999999999887 99999
Q ss_pred HHHHHHHHHHHHHHhHHHHhhhhccchHHHHHHHHHHHHHHHH
Q 010358 232 NFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNM 274 (512)
Q Consensus 232 ~~~~~~~~lg~~l~p~i~~~l~~~~gw~~~f~i~~~~~~i~~i 274 (512)
++++....+|..++|.+++++.+..||++.|++.++..++..+
T Consensus 127 ~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 169 (375)
T 2gfp_A 127 SLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTF 169 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999989999999887766554443
No 7
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.59 E-value=5.2e-16 Score=161.07 Aligned_cols=169 Identities=11% Similarity=-0.121 Sum_probs=111.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHH
Q 010358 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (512)
Q Consensus 70 ~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~l~~l~~G~LsD~~~GR~~~i~~~~~l~~ig 149 (512)
..+.+....++..+++..+.++++.|+++++|++..+++.+.+.+.++..++++++|+++||+ |||+++.++..++.++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~-Grr~~l~~~~~~~~~~ 86 (417)
T 2cfq_A 8 NFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKL-GLRKYLLWIITGMLVM 86 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTS-TTCCHHHHHHHHTTSC
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHH
Confidence 455555556666666667778899999999999999999999999999999999999999998 9999999888776543
Q ss_pred HHHHhhhhcccccCCCCCcccccccccCCCCCcchhhH-HHHHHHHHHHHHhhcChhhhhhhHhhccCCCCChhhhhhhh
Q 010358 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQM-LYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLD 228 (512)
Q Consensus 150 ~~~l~~~~~~~~l~~~~~~~~~~~~~~~~c~~~~~~~~-~~l~~~~~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~ 228 (512)
...+...... ... ..++.++.+.+++.+...+...+...+..++.. +.++
T Consensus 87 ~~~~~~~~~~-------------------------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~----~~~~ 137 (417)
T 2cfq_A 87 FAPFFIFIFG-------------------------PLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVS----RRSN 137 (417)
T ss_dssp HHHHHHHTHH-------------------------HHHHTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHH----HHHT
T ss_pred HHHHHHHHHH-------------------------HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhh----hhcc
Confidence 2222111000 000 012233333333333333333333333322111 1255
Q ss_pred hHHHHHHHHHHHHHHHHhHHHHhhhhccchHHHHHHHHHHH
Q 010358 229 RFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAM 269 (512)
Q Consensus 229 ~~~~~~~~~~~lg~~l~p~i~~~l~~~~gw~~~f~i~~~~~ 269 (512)
..++..+...++|..++|.+++++.+ .+|++.|++.++..
T Consensus 138 ~~~g~~~~~~~~g~~~~~~l~~~l~~-~~~~~~f~~~~~~~ 177 (417)
T 2cfq_A 138 FEFGRARMFGCVGWALGASIVGIMFT-INNQFVFWLGSGCA 177 (417)
T ss_dssp CCHHHHSSSTTTHHHHHHHHHHHHHH-HCSHHHHTTTTTTT
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHH-hchhHHHHHHHHHH
Confidence 56666667788999999999999876 58999988765553
No 8
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.53 E-value=1.8e-13 Score=142.14 Aligned_cols=178 Identities=15% Similarity=0.136 Sum_probs=149.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhcc-chHHHHHHHHHHHH
Q 010358 69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYL-GRYWTIAIFTTIYL 147 (512)
Q Consensus 69 ~~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~l~~l~~G~LsD~~~-GR~~~i~~~~~l~~ 147 (512)
+.++.+.+..++..+.++++..+++.|+++.+|++..+++.+.+...++..++.++.|+++||+. |||+.+.++..+..
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~ 331 (451)
T 1pw4_A 252 KLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLV 331 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHH
Confidence 46777777888888888899999999999989999999999999999999999999999999942 88888877776655
Q ss_pred -HHHHHHhhhhcccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhhcChhhhhhhHhhccCCCCChhhhhh
Q 010358 148 -AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTH 226 (512)
Q Consensus 148 -ig~~~l~~~~~~~~l~~~~~~~~~~~~~~~~c~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~ 226 (512)
++.+++.+. +. .+...+.+..++.|++.++..+...+++.|.+|++.
T Consensus 332 ~~~~~~~~~~-------~~-------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------ 379 (451)
T 1pw4_A 332 TIATIVYWMN-------PA-------------------GNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKA------ 379 (451)
T ss_dssp HHHHHHTTSC-------CT-------------------TCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTH------
T ss_pred HHHHHHHHHh-------cc-------------------cCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhh------
Confidence 555554432 10 245566777788889888888888999999999887
Q ss_pred hhhHHHHHHHHHHH-HHHHHhHHHHhhhhccchHHHHHHHHHHHHHHHHHHHh
Q 010358 227 LDRFFNFFYLSVTV-GAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI 278 (512)
Q Consensus 227 r~~~~~~~~~~~~l-g~~l~p~i~~~l~~~~gw~~~f~i~~~~~~i~~i~~~~ 278 (512)
|++++++++...++ |..++|.+.+++.+..||+..|++.+++.+++.++.+.
T Consensus 380 ~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 432 (451)
T 1pw4_A 380 AGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIV 432 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999 99999999999999999999999888877766665544
No 9
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.39 E-value=1.4e-11 Score=127.44 Aligned_cols=167 Identities=10% Similarity=0.009 Sum_probs=133.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-hhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHH
Q 010358 70 AALFIFGNEMAERMAYFGLSVNMVTF-MFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLA 148 (512)
Q Consensus 70 ~~~~i~~~~~~~~~~~~~v~~~l~~y-l~~~l~~s~~~a~~~~~~~~~~~~l~~l~~G~LsD~~~GR~~~i~~~~~l~~i 148 (512)
.++...+..++.....+++..+++.| +++.+|++..+++...+.+.++..++.+++|+++||+ |||+++.++.++..+
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~-~~~~~~~~~~~~~~~ 337 (438)
T 3o7q_A 259 HWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRF-APHKVLAAYALIAMA 337 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHH
Confidence 45556666677777778888999999 8888899999999999999999999999999999997 999999999988887
Q ss_pred HHHHHhhhhcccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhhcChhhhhhhHhhccCCCCChhhhhhhh
Q 010358 149 GLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLD 228 (512)
Q Consensus 149 g~~~l~~~~~~~~l~~~~~~~~~~~~~~~~c~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~ 228 (512)
+.+++... .+.. ..+..++.+++.+...+...++..|.+|++ ++
T Consensus 338 ~~~~~~~~----------------------------~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-------~~ 381 (438)
T 3o7q_A 338 LCLISAFA----------------------------GGHV-GLIALTLCSAFMSIQYPTIFSLGIKNLGQD-------TK 381 (438)
T ss_dssp HHHHHHHC----------------------------CHHH-HHHHHHHHHHHHTTHHHHHHHHHHSSCGGG-------HH
T ss_pred HHHHHHHc----------------------------CCcH-HHHHHHHHHHHHHHHHHHHHHHHHhhcccc-------cc
Confidence 77666654 2222 234457888899999999999989998843 44
Q ss_pred hHHHHHHHHHHHHHHHHhHHHHhhhhccc-hHHHHHHHHHHHHHHHH
Q 010358 229 RFFNFFYLSVTVGAIVAFTLVVYIQMEHG-WGSAFGALAIAMGISNM 274 (512)
Q Consensus 229 ~~~~~~~~~~~lg~~l~p~i~~~l~~~~g-w~~~f~i~~~~~~i~~i 274 (512)
.+.++.. ...+|+.++|.+.|++.+..| ++..|++.+++.++.++
T Consensus 382 ~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~ 427 (438)
T 3o7q_A 382 YGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFI 427 (438)
T ss_dssp HHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHHHH
T ss_pred chhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 4444444 556999999999999999999 99999876655544433
No 10
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.38 E-value=5.9e-12 Score=130.40 Aligned_cols=173 Identities=10% Similarity=0.053 Sum_probs=124.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCC---hhHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHH
Q 010358 72 LFIFGNEMAERMAYFGLSVNMVTFMFYVMHKS---FADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLA 148 (512)
Q Consensus 72 ~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s---~~~a~~~~~~~~~~~~l~~l~~G~LsD~~~GR~~~i~~~~~l~~i 148 (512)
+...+..+.....++....+++.|+.+.++.. ....+...+...++..++.+++|+++||+ |||+++.++.++..+
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~l~~~~~~~~~ 301 (417)
T 2cfq_A 223 WFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRI-GGKNALLLAGTIMSV 301 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-cHHHHHHHHHHHHHH
Confidence 33333333334444455566888887766532 23345555566667778899999999998 999999888887777
Q ss_pred HHHHHhhhhcccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhhcChhhhhhhHhhccCCCCChhhhhhhh
Q 010358 149 GLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLD 228 (512)
Q Consensus 149 g~~~l~~~~~~~~l~~~~~~~~~~~~~~~~c~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~ 228 (512)
+.+++++. .+...+++..++.+++.+...+....+.+|.+|++. |+
T Consensus 302 ~~~~~~~~----------------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~------~g 347 (417)
T 2cfq_A 302 RIIGSSFA----------------------------TSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRF------SA 347 (417)
T ss_dssp HHHHHTTC----------------------------CSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHH------HH
T ss_pred HHHHHHHh----------------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH------HH
Confidence 65555443 233445555666677766666777889999999876 89
Q ss_pred hHHHH-HHHHHHHHHHHHhHHHHhhhhccchHHHHHHHHHHHHHHHHHHHhh
Q 010358 229 RFFNF-FYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIG 279 (512)
Q Consensus 229 ~~~~~-~~~~~~lg~~l~p~i~~~l~~~~gw~~~f~i~~~~~~i~~i~~~~~ 279 (512)
+++++ ++....+|+.++|.++|++.+..|+...|.+.+++.+++.++.+..
T Consensus 348 ~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~ 399 (417)
T 2cfq_A 348 TIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFT 399 (417)
T ss_dssp HHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhh
Confidence 98888 5788889999999999999998899989988877776666655443
No 11
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.22 E-value=4.6e-11 Score=125.74 Aligned_cols=186 Identities=12% Similarity=0.015 Sum_probs=133.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHH-----HHHH
Q 010358 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIA-----IFTT 144 (512)
Q Consensus 70 ~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~l~~l~~G~LsD~~~GR~~~i~-----~~~~ 144 (512)
..+.+.+..++..+.++....+++.|+.+.++.+..+++.......+...++.++.|+++||+ |||+... ++.+
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~-~~r~~~~~~~~~~~~~ 362 (491)
T 4aps_A 284 SYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAW-KKNQPSSPTKFAVGLM 362 (491)
T ss_dssp THHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHT-TTC---CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHH-hccCCCchHHHHHHHH
Confidence 344445455555666666777889999998888877777777778888888899999999998 9876544 5666
Q ss_pred HHHHHHHHHhhhhcccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhhcChhhhhhhHhhccCCCCChhhh
Q 010358 145 IYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYK 224 (512)
Q Consensus 145 l~~ig~~~l~~~~~~~~l~~~~~~~~~~~~~~~~c~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~ 224 (512)
+..++.+++......... +...+...+.++.++.+++.+...+...++..|.+|++.
T Consensus 363 ~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~---- 419 (491)
T 4aps_A 363 FAGLSFLLMAIPGALYGT-------------------SGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAF---- 419 (491)
T ss_dssp HHHHHHTTTHHHHHHCCC-------------------CTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTC----
T ss_pred HHHHHHHHHHHHHHhcCC-------------------CCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHH----
Confidence 666665555443110000 001245566777888999999989999999999999988
Q ss_pred hhhhhHHHHHHHHHHHHHHHHhHHHHhhhhccchHHHHHHHHHHHHHHHHHHHhhccc
Q 010358 225 THLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPL 282 (512)
Q Consensus 225 ~~r~~~~~~~~~~~~lg~~l~p~i~~~l~~~~gw~~~f~i~~~~~~i~~i~~~~~~~~ 282 (512)
|+.+.++++...++|..++|.+.+++.+. ++.+.|++.+++.+++.++.++..++
T Consensus 420 --~g~~~g~~~~~~~~g~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (491)
T 4aps_A 420 --NSQMMSMWFLSSSVGSALNAQLVTLYNAK-SEVAYFSYFGLGSVVLGIVLVFLSKR 474 (491)
T ss_dssp --SSSSTHHHHHHHHHHHHHHHHHGGGGGGS-STTHHHHHTHHHHHHHHHHHHHC---
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999988764 66677777777666666655554443
No 12
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.09 E-value=1e-08 Score=107.52 Aligned_cols=185 Identities=9% Similarity=0.002 Sum_probs=123.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHH
Q 010358 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (512)
Q Consensus 70 ~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~l~~l~~G~LsD~~~GR~~~i~~~~~l~~ig 149 (512)
....+....+....+.+.+ .+...++.+..+.+............+...++.++++++.||+ |||+.++.+.....++
T Consensus 278 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~-Grr~~~~~~~~~~~~~ 355 (491)
T 4gc0_A 278 IVIGVMLSIFQQFVGINVV-LYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKF-GRKPLQIIGALGMAIG 355 (491)
T ss_dssp HHHHHHHHHHHHHTCHHHH-HHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHH-HhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhh-cCcchhccchHHHHHH
Confidence 3333333333334444444 4445666677888887777777777788889999999999998 9999999998888887
Q ss_pred HHHHhhhhcccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhhcChhhhhhhHhhccCCCCChhhhhhhhh
Q 010358 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR 229 (512)
Q Consensus 150 ~~~l~~~~~~~~l~~~~~~~~~~~~~~~~c~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~ 229 (512)
.+.+....... .. .....+.+..+..+++ .+..+....+.+|.||++. |++
T Consensus 356 ~~~l~~~~~~~---~~-------------------~~~~~~~~~~~~~~~~-~~~~~~~~~~~~E~fPt~~------R~~ 406 (491)
T 4gc0_A 356 MFSLGTAFYTQ---AP-------------------GIVALLSMLFYVAAFA-MSWGPVCWVLLSEIFPNAI------RGK 406 (491)
T ss_dssp HHHHHHHHHTT---CC-------------------HHHHHHHHHHHHHHHH-TTTTHHHHHHHHHSSCTTT------HHH
T ss_pred HHHHHHHHhcc---cc-------------------hHHHHHHHHHHHHHHH-hHHHHHHHHHHHHhCCHhH------HHH
Confidence 77665542210 00 1112222222222222 3345667789999999998 999
Q ss_pred HHHHHHHHHHHHHHHHhHHHHhhhh------ccchHHHHHHHHHHHHHHHHHHHhhcccccc
Q 010358 230 FFNFFYLSVTVGAIVAFTLVVYIQM------EHGWGSAFGALAIAMGISNMLFFIGTPLYRH 285 (512)
Q Consensus 230 ~~~~~~~~~~lg~~l~p~i~~~l~~------~~gw~~~f~i~~~~~~i~~i~~~~~~~~~~~ 285 (512)
++++.+....+|+.+++.+.+++.+ ..++.+.|++.+++.+++.++.++..|+.+.
T Consensus 407 ~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg 468 (491)
T 4gc0_A 407 ALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKG 468 (491)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCCCC
Confidence 9999999899999988887766643 3455667777777777777666666665543
No 13
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=98.86 E-value=1e-09 Score=111.15 Aligned_cols=165 Identities=12% Similarity=-0.089 Sum_probs=125.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHH-HH
Q 010358 69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTI-YL 147 (512)
Q Consensus 69 ~~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~l~~l~~G~LsD~~~GR~~~i~~~~~l-~~ 147 (512)
+.++...+..++.....+++..+++.|+++.+|.+..+++.+.....++..++.++.|+++||+ ||+ +.++..+ ..
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~-~~~--~~~~~~~~~~ 275 (375)
T 2gfp_A 199 SGFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRF-STL--MWQSVICCLL 275 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHH-HHH--HHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH--HHHHHHHHHH
Confidence 3566666777777888888888999999998999999999999999999999999999999997 872 2333322 22
Q ss_pred HHHHHHhhhhcccccCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHhhcChhhhhhhHhhccCCCCChhhhhhh
Q 010358 148 AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHL 227 (512)
Q Consensus 148 ig~~~l~~~~~~~~l~~~~~~~~~~~~~~~~c~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r 227 (512)
++..++..... + ..+...+++..++.+++.+...+...++..|.+| ++ |
T Consensus 276 ~~~~~~~~~~~-----~-------------------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~------~ 324 (375)
T 2gfp_A 276 AGLLMWIPDWF-----G-------------------VMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FL------A 324 (375)
T ss_dssp TSSSSSHHHHH-----H-------------------HHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HH------H
T ss_pred HHHHHHHHhhh-----c-------------------cccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cc------c
Confidence 22221111100 0 0245566677788899999999999999999987 45 9
Q ss_pred hhHHHHHHHHHHHHHHHHhHHHHhhhhccchHHHHHHHHH
Q 010358 228 DRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAI 267 (512)
Q Consensus 228 ~~~~~~~~~~~~lg~~l~p~i~~~l~~~~gw~~~f~i~~~ 267 (512)
++.+++++...++|..++|.+.+++.+..+|...+.+.++
T Consensus 325 g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~ 364 (375)
T 2gfp_A 325 GTAGALVGGLQNIGSGVLASLSAMLPQTGQGSLGLLMTLM 364 (375)
T ss_dssp HHHHHHHHHHHHHHHHCCSTTCTHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence 9999999999999999999999999888888877766443
No 14
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=98.24 E-value=1.2e-06 Score=92.49 Aligned_cols=90 Identities=16% Similarity=0.143 Sum_probs=68.4
Q ss_pred hHHHHHHHHHHHHHhhcChhhhhhhHhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhHHHHhhhhcc--ch-----
Q 010358 186 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEH--GW----- 258 (512)
Q Consensus 186 ~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~lg~~l~p~i~~~l~~~~--gw----- 258 (512)
+...++++.++.+++.+...+...++..|.+|++. |++++++++...++|+.++|.+.+++.+.. +|
T Consensus 404 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~~~~~~~~~ 477 (524)
T 2xut_A 404 SIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAM------KGTIMSFWTLSVTVGNLWVLLANVSVKSPTVTEQIVQTG 477 (524)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHTTTHHHHCCTTC------CTTTHHHHGGGHHHHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHH------HhHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccc
Confidence 44566777888999999999999999999999888 999999999999999999999999988743 23
Q ss_pred ----HHHHHHHHHHHHHHHHHHHhhcc
Q 010358 259 ----GSAFGALAIAMGISNMLFFIGTP 281 (512)
Q Consensus 259 ----~~~f~i~~~~~~i~~i~~~~~~~ 281 (512)
+..|++.+++.+++.+++++..+
T Consensus 478 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 504 (524)
T 2xut_A 478 MSVTAFQMFFFAGFAILAAIVFALYAR 504 (524)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHC----
T ss_pred ccccccHHHHHHHHHHHHHHHHHHHHH
Confidence 23366666655555555544433
Done!