Query 010360
Match_columns 512
No_of_seqs 219 out of 1618
Neff 6.0
Searched_HMMs 46136
Date Thu Mar 28 23:37:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010360.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010360hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK14479 dihydroxyacetone kina 100.0 8E-144 2E-148 1170.7 55.5 492 1-506 67-567 (568)
2 KOG2426 Dihydroxyacetone kinas 100.0 2E-143 4E-148 1107.9 44.3 491 1-506 71-581 (582)
3 PTZ00375 dihydroxyacetone kina 100.0 2E-142 4E-147 1157.9 53.7 490 1-504 70-582 (584)
4 TIGR02361 dak_ATP dihydroxyace 100.0 1E-140 2E-145 1147.2 53.7 490 1-502 66-574 (574)
5 PRK14481 dihydroxyacetone kina 100.0 4E-101 9E-106 783.6 29.9 262 1-267 68-330 (331)
6 TIGR02363 dhaK1 dihydroxyaceto 100.0 6E-101 1E-105 781.6 29.6 260 1-265 69-329 (329)
7 PRK11468 dihydroxyacetone kina 100.0 1E-100 2E-105 782.9 29.9 266 1-268 68-355 (356)
8 TIGR02362 dhaK1b probable dihy 100.0 1E-100 3E-105 778.3 29.5 260 1-265 65-326 (326)
9 PRK14483 DhaKLM operon coactiv 100.0 2E-100 4E-105 777.6 29.5 260 1-265 67-329 (329)
10 PF02733 Dak1: Dak1 domain; I 100.0 1E-101 2E-106 787.8 20.6 267 1-268 52-325 (325)
11 COG2376 DAK1 Dihydroxyacetone 100.0 1.3E-75 2.9E-80 594.1 22.1 256 1-265 67-323 (323)
12 PRK10005 dihydroxyacetone kina 100.0 9E-52 2E-56 401.8 23.2 200 303-506 4-209 (210)
13 TIGR02365 dha_L_ycgS dihydroxy 100.0 1.2E-48 2.7E-53 375.9 21.7 187 307-501 1-193 (194)
14 PF02734 Dak2: DAK2 domain; I 100.0 1.6E-43 3.4E-48 335.4 16.3 169 331-503 1-175 (175)
15 TIGR03599 YloV DAK2 domain fus 100.0 5.3E-35 1.1E-39 317.9 22.1 189 307-508 1-196 (530)
16 COG1461 Predicted kinase relat 99.9 5E-26 1.1E-30 243.4 15.6 196 302-509 5-206 (542)
17 COG2376 DAK1 Dihydroxyacetone 99.8 1.7E-21 3.8E-26 198.9 9.8 196 311-507 27-235 (323)
18 TIGR03599 YloV DAK2 domain fus 86.6 33 0.00071 38.6 17.2 179 4-230 337-519 (530)
19 PRK11377 dihydroxyacetone kina 81.7 22 0.00047 39.4 12.9 176 15-221 48-240 (473)
20 PRK09314 bifunctional 3,4-dihy 73.6 3.9 8.4E-05 43.2 4.1 55 4-59 252-310 (339)
21 TIGR02364 dha_pts dihydroxyace 73.4 17 0.00037 32.9 7.7 78 15-113 44-124 (125)
22 PF00925 GTP_cyclohydro2: GTP 63.2 5.2 0.00011 37.9 2.3 62 4-66 51-147 (169)
23 PRK12485 bifunctional 3,4-dihy 59.6 10 0.00022 40.7 3.9 56 4-59 256-340 (369)
24 cd00641 GTP_cyclohydro2 GTP cy 57.4 16 0.00035 35.3 4.6 33 5-37 53-89 (193)
25 PRK00393 ribA GTP cyclohydrola 56.1 16 0.00034 35.6 4.3 35 4-38 53-91 (197)
26 PRK14484 phosphotransferase ma 56.0 21 0.00045 32.5 4.7 77 15-113 44-120 (124)
27 TIGR00505 ribA GTP cyclohydrol 52.9 19 0.00042 34.8 4.3 34 4-37 50-87 (191)
28 PTZ00450 macrophage migration 47.9 30 0.00066 30.8 4.4 40 191-230 60-99 (113)
29 PLN02831 Bifunctional GTP cycl 47.1 18 0.00039 39.8 3.4 39 3-41 290-332 (450)
30 cd00615 Orn_deC_like Ornithine 45.7 49 0.0011 33.5 6.2 54 12-69 138-191 (294)
31 PF02645 DegV: Uncharacterised 45.5 71 0.0015 32.5 7.3 185 12-235 61-266 (280)
32 PRK08815 GTP cyclohydrolase; P 44.3 19 0.0004 38.8 3.0 38 4-42 224-265 (375)
33 PTZ00397 macrophage migration 43.8 44 0.00094 29.3 4.8 41 190-230 59-99 (116)
34 PRK14019 bifunctional 3,4-dihy 41.7 29 0.00062 37.2 3.9 56 4-59 256-337 (367)
35 PRK09311 bifunctional 3,4-dihy 41.4 32 0.0007 37.3 4.3 34 4-37 257-294 (402)
36 COG1416 Uncharacterized conser 41.3 53 0.0012 29.4 4.8 71 164-241 13-83 (112)
37 PLN03065 isocitrate dehydrogen 40.6 1.9E+02 0.0042 32.2 10.0 134 23-175 325-474 (483)
38 PF13684 Dak1_2: Dihydroxyacet 40.2 4.5E+02 0.0098 27.4 17.4 174 4-225 119-297 (313)
39 TIGR00762 DegV EDD domain prot 40.1 1.1E+02 0.0024 31.0 7.7 95 12-122 60-157 (275)
40 PF00975 Thioesterase: Thioest 36.6 59 0.0013 30.9 4.9 76 144-235 30-106 (229)
41 COG1732 OpuBC Periplasmic glyc 34.4 81 0.0018 33.0 5.7 85 121-237 15-99 (300)
42 PRK05340 UDP-2,3-diacylglucosa 32.8 51 0.0011 32.5 3.9 36 5-40 37-81 (241)
43 PRK09318 bifunctional 3,4-dihy 30.4 39 0.00084 36.5 2.7 39 3-42 239-280 (387)
44 PF03793 PASTA: PASTA domain; 29.3 90 0.002 23.9 4.0 30 34-65 1-30 (63)
45 PF02955 GSH-S_ATP: Prokaryoti 29.1 1E+02 0.0022 29.5 5.1 83 150-237 42-159 (173)
46 COG4175 ProV ABC-type proline/ 27.3 88 0.0019 33.3 4.5 119 89-249 10-137 (386)
47 PF01187 MIF: Macrophage migra 27.2 60 0.0013 28.5 3.0 40 191-230 58-97 (114)
48 COG3412 Uncharacterized protei 27.1 99 0.0022 28.3 4.3 80 14-112 44-123 (129)
49 PF08353 DUF1727: Domain of un 26.0 77 0.0017 28.2 3.4 32 10-41 81-112 (113)
50 PF02633 Creatininase: Creatin 25.4 3E+02 0.0064 27.2 7.9 61 151-225 72-133 (237)
51 KOG1526 NADP-dependent isocitr 25.4 47 0.001 34.8 2.2 47 24-71 267-313 (422)
52 PF02873 MurB_C: UDP-N-acetyle 25.1 96 0.0021 27.3 3.8 34 192-226 66-99 (105)
53 COG0616 SppA Periplasmic serin 24.8 2.4E+02 0.0052 29.4 7.4 60 165-236 83-142 (317)
54 PRK09319 bifunctional 3,4-dihy 24.5 69 0.0015 36.2 3.4 38 3-41 261-302 (555)
55 TIGR00619 sbcd exonuclease Sbc 24.2 2.9E+02 0.0062 27.7 7.6 54 5-60 44-105 (253)
56 TIGR01854 lipid_A_lpxH UDP-2,3 24.0 97 0.0021 30.4 4.1 37 5-41 35-80 (231)
57 COG1307 DegV Uncharacterized p 23.0 6.7E+02 0.015 25.8 10.1 204 14-246 64-279 (282)
58 PRK11340 phosphodiesterase Yae 22.4 1.7E+02 0.0036 29.6 5.5 55 5-59 85-144 (271)
59 PF03408 Foamy_virus_ENV: Foam 22.3 2.4E+02 0.0052 33.4 7.1 68 312-387 881-948 (981)
60 cd03465 URO-D_like The URO-D _ 21.9 2E+02 0.0043 29.5 6.0 106 12-132 206-315 (330)
61 COG0336 TrmD tRNA-(guanine-N1) 21.6 59 0.0013 32.7 2.0 58 16-73 64-133 (240)
62 PRK07198 hypothetical protein; 21.2 1.3E+02 0.0029 32.6 4.6 38 3-41 246-291 (418)
63 PF14552 Tautomerase_2: Tautom 21.0 87 0.0019 26.3 2.6 52 179-230 18-70 (82)
64 cd07385 MPP_YkuE_C Bacillus su 20.8 2.1E+02 0.0045 27.2 5.6 54 5-58 37-92 (223)
65 TIGR02326 transamin_PhnW 2-ami 20.7 2.6E+02 0.0057 28.8 6.8 53 10-67 58-111 (363)
66 COG1105 FruK Fructose-1-phosph 20.7 3.9E+02 0.0084 28.2 7.8 127 112-262 66-199 (310)
No 1
>PRK14479 dihydroxyacetone kinase; Provisional
Probab=100.00 E-value=7.9e-144 Score=1170.65 Aligned_cols=492 Identities=40% Similarity=0.600 Sum_probs=446.6
Q ss_pred CcceeccCCCCCCCCHHHHHHHHHhccCCCCeEEEeeccccccccHHHHHHHHHhcCCcEEEEEecCcccCCCCCCCCCc
Q 010360 1 MLTAAICGDVFASPPVDSILAGIHAVTGPMGCLLIVTNYTGDRLNFGLAAEQAKSEGYKVEIVIVGDDCALPPPRGIAGR 80 (512)
Q Consensus 1 mL~aav~G~vFaSPs~~~i~~ai~~~~~~~Gvl~iv~NYtGD~lnFg~A~e~a~~~G~~v~~v~v~DDva~~~~~~~~gR 80 (512)
||||||||+||||||++||++|||++++++|||||||||||||||||||+|+|+++||+|++|+|+||||+.++.+++||
T Consensus 67 ml~aav~G~vFaSPs~~~i~~ai~~v~~~~Gvl~iv~NYtGD~lnF~~A~e~a~~~g~~v~~v~v~DDva~~~~~~~~~R 146 (568)
T PRK14479 67 MLDAAVCGNVFTSPSADQVYAAIRAADGGAGVLLIVGNYAGDVMNFGLAAELARAEGIDVRTVVVTDDVASAPSGETAGR 146 (568)
T ss_pred ccceeeccCccCCCCHHHHHHHHHhccCCCCEEEEeCCcHHHHhhHHHHHHHHHhcCCcEEEEEeCCcccCCCCCcCCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999655568899
Q ss_pred cccchhhhHHHHHhHHHHcCCCHHHHHHHHHHHHhhhcccceeccccccCC-CCCCCCcCCCeeEEeccccCCCCccccc
Q 010360 81 RGLAGTILVNKIAGAAAAAGLSLADVAAEAKRASEMVGTMGVALSVCTLPG-QVTSDRLGPGKMELGLGIHGEPGAAVAD 159 (512)
Q Consensus 81 RG~aG~v~v~Ki~GA~A~~G~~l~~v~~~~~~~~~~~~t~gval~~c~~P~-~~~~~~l~~~e~E~G~GiHgEpG~~~~~ 159 (512)
||+|||||||||+||+|++|+||+||+++++++++|++||||+|++||+|+ ++|.|+|++||||||||||||||++|.+
T Consensus 147 RG~AG~v~v~KiaGAaA~~G~~L~ev~~~~~~~~~~~~tigval~~c~~P~~~~~~f~l~~~e~E~G~GiHgEpG~~~~~ 226 (568)
T PRK14479 147 RGIAGTVLVFKIAGAAAEAGLDLDEVAAIARKANARTRSMGVALDGCTLPGAGEPLFTLPEGEMELGLGIHGEPGIEREA 226 (568)
T ss_pred cchhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcceeeeeccCcccCCCCCCCCcCCCCeeEeccccCCCCceeecC
Confidence 999999999999999999999999999999999999999999999999999 7899999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEcCCCCChHHHHHHHHHHHHHhhhhhcCCeEEEeeecccccccCCC
Q 010360 160 LQPVDVVVSHVLKQILSTETNYVPITRGNRVVLMINGLGATPVMELMIAAGKAVPNLQLEHGLAVERVYTGSFMTSLDMA 239 (512)
Q Consensus 160 ~~~a~~lv~~ml~~ll~~~~~~~~~~~~~~v~vlvNnlG~ts~~El~~~~~~~~~~L~~~~gi~v~r~~~G~~~TSl~m~ 239 (512)
+.++++++++|+++|+++ ++++++|+|+|||||||+||++|||++++++.++|+++ ||+|+|+|+|+|||||||+
T Consensus 227 ~~~a~~~~~~~~~~l~~~----~~~~~~d~v~~lvN~lG~t~~~El~i~~~~~~~~l~~~-~i~v~~~~vG~~~Tsldm~ 301 (568)
T PRK14479 227 LPTADELADRLVDRILAD----LPLGAGERVAVLVNGLGATPYEELFVVYGAVARLLAAR-GITVVRPEVGEFVTSLDMA 301 (568)
T ss_pred CCCHHHHHHHHHHHHHhh----cCCCCCCeEEEEecCCCCCcHHHHHHHHHHHHHHHHHC-CCEEEEeeeecccccCCCC
Confidence 999999999999999986 58899999999999999999999999999999999888 9999999999999999999
Q ss_pred cceEEEeeccHHHHHhhcCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCccccccHHHHHHHHHHHHHHHH
Q 010360 240 GFSISIMKADEVILKHLDATTKAPHWPVGVDGNRPPAKIPVPMPPSHSMKSDESLGRPLQLSQQGHVLEVTIEAAAEAVV 319 (512)
Q Consensus 240 GfSiTll~ld~~~~~~ldap~~a~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~li 319 (512)
|||||||++|++|++|||+||++|+||..... .+.. +.......... ...........+...+++||..+++.|+
T Consensus 302 G~SiTl~~~d~~~~~~ldap~~~~~~~~~~~~-~~~~--~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~l~~~a~~l~ 376 (568)
T PRK14479 302 GASLTLMKLDDELEELWDAPADTPAFRRGGAV-EPVE--YVEAAEEDDAE--EPPRASKASRATAANLVAALDAVAEALI 376 (568)
T ss_pred ccEEEeeeCCHHHHHHhCCCCCCCCCCCCCcc-cccC--ccccccccccc--ccccCCccccCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999663110 0111 11000000000 0000111122356889999999999999
Q ss_pred HhHHHhhhccCCCCCCchhHHHHHHHHHHHHHhhhcCCC--CCHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhhc
Q 010360 320 NLRDRLNEWDSKVGDGDCGSTMYRGATAILEDKKKYYPL--NDAAETVNEIGASIRRVMGGTSGILYHIFCKAAYAKLKA 397 (512)
Q Consensus 320 ~~e~~Ln~LD~~vGDGD~G~tm~~g~~ai~~~l~~~~~~--~~~~~~l~~i~~a~~~~~GGtSG~Ly~~~f~~~a~~l~~ 397 (512)
+++++||+||+.+||||||+||.+||+++.+.+++ ... .++.++|+.+++++++.||||||+|||+||+++++.+++
T Consensus 377 ~~~d~Ln~LD~~VGDGD~G~nM~~G~~ai~~~l~~-~~~~~~~~~~~l~~i~~all~~~GGtSG~Lys~~f~~~a~~l~~ 455 (568)
T PRK14479 377 DNEDELGELDAVAGDGDHGIGMARGSKAALAAARA-AVEAGAGAGSVLAAAGDAWADHAGGTSGPLWGTALRAAGKALGD 455 (568)
T ss_pred HhHHHHHHhcCCcCCCcHHHHHHHHHHHHHHHHhh-ccccCCCHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999973 332 689999999999999999999999999999999999987
Q ss_pred cCCCCCCHHH------HHHHHHHHhhCCCCCCcchhhcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccchhh
Q 010360 398 SSKSGITSKQ------SSIAAVSKYGGATAGYRTMLDALIPAAAVLQERLSAGIDPSTAFILSSEAAIAGAESTKHMQAQ 471 (512)
Q Consensus 398 ~~~~~~~~~~------~al~~i~~~g~A~~GDkTMlDaL~Pa~~al~~~~~~g~~~~~~l~~A~~aA~~gae~T~~m~A~ 471 (512)
+ ++++..+ +++++|++||+|+||||||||+|+|+++++++..+++.++.++|++++++|++|+++|++|+|+
T Consensus 456 ~--~~l~~~~la~al~~g~~~v~~~G~AkpGDkTMLDaL~Pa~eal~~~~~~~~~~~~~l~~a~~aA~~gae~T~~m~A~ 533 (568)
T PRK14479 456 K--DEPTAADFAAAVRAAVDAIQELGGAQVGDKTMVDALVPFADALEAAAAAGADLAEAWAAAAEAAEEGAEATADLVPR 533 (568)
T ss_pred C--CCCCHHHHHHHHHHHHHHHHHhcCCCCCCCeeeeeHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCchhhhh
Confidence 6 5666555 8899999999999999999999999999999988888999999999999999999999999999
Q ss_pred hccccccCCccCCCCCCchHHHHHHHHHHHHHHHH
Q 010360 472 AGRSTYISPEILASVPDPGAMAAAAWYRAAALAVK 506 (512)
Q Consensus 472 ~GRAsY~gers~g~vpDPGA~av~~il~al~~~~~ 506 (512)
+|||+|+|||++|++ ||||+++++||++|++.+.
T Consensus 534 ~GRAsYlgers~Gv~-DPGA~~~~~il~al~~~~~ 567 (568)
T PRK14479 534 MGRARYLGERSLGTP-DAGAVSLALIFTAIAGSLK 567 (568)
T ss_pred hcccccccccccCCC-CCcHHHHHHHHHHHHHHhh
Confidence 999999999999765 9999999999999998763
No 2
>KOG2426 consensus Dihydroxyacetone kinase/glycerone kinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.8e-143 Score=1107.88 Aligned_cols=491 Identities=48% Similarity=0.749 Sum_probs=447.9
Q ss_pred CcceeccCCCCCCCCHHHHHHHHHhccCCCCeEEEeeccccccccHHHHHHHHHhcCCcEEEEEecCcccCCCCCC-CCC
Q 010360 1 MLTAAICGDVFASPPVDSILAGIHAVTGPMGCLLIVTNYTGDRLNFGLAAEQAKSEGYKVEIVIVGDDCALPPPRG-IAG 79 (512)
Q Consensus 1 mL~aav~G~vFaSPs~~~i~~ai~~~~~~~Gvl~iv~NYtGD~lnFg~A~e~a~~~G~~v~~v~v~DDva~~~~~~-~~g 79 (512)
||||++||+||||||++||++|||+|.+.+|+|+|||||||||||||||+||||++|++||+|+|+||||+++++. ++|
T Consensus 71 mLtaai~G~iFASPstkqI~aairaV~~~~GtLlIVKNYTGD~LhFGLAaErara~G~~ve~v~vgDDvavg~~kg~~vG 150 (582)
T KOG2426|consen 71 MLTAAIAGDIFASPSTKQILAAIRAVEGEAGTLLIVKNYTGDRLHFGLAAERARAAGIKVELVAVGDDVAVGRKKGGKVG 150 (582)
T ss_pred hhhhhhhcccccCCcHHHHHHHHHHhccCCceEEEEeccccceeehhhhHHHHHhcCCceEEEEEccccccCCccccccc
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999999887 899
Q ss_pred ccccchhhhHHHHHhHHHHcCCCHHHHHHHHHHHHhhhcccceeccccccCCCCCCCCcCCCeeEEeccccCCCCccc-c
Q 010360 80 RRGLAGTILVNKIAGAAAAAGLSLADVAAEAKRASEMVGTMGVALSVCTLPGQVTSDRLGPGKMELGLGIHGEPGAAV-A 158 (512)
Q Consensus 80 RRG~aG~v~v~Ki~GA~A~~G~~l~~v~~~~~~~~~~~~t~gval~~c~~P~~~~~~~l~~~e~E~G~GiHgEpG~~~-~ 158 (512)
||||+||||||||+||+|++|++|++|.++++.+++|+.||||+|+||++||++|.++|+++|||+|||||||||++| .
T Consensus 151 RRGLagTVLvHKIAGAaA~~Gl~Le~va~~ak~v~dn~~Tig~SL~hc~vPG~k~e~eL~~de~ElGmGIHnEpG~~r~~ 230 (582)
T KOG2426|consen 151 RRGLAGTVLVHKIAGAAAAEGLSLEEVAKVAKSVVDNMGTIGVSLDHCSVPGRKPEDELGADEMELGMGIHNEPGVKRIS 230 (582)
T ss_pred cccccceeeeehhhhHHHHccCCHHHHHHHHHHHHHhhhhheeeeeeeccCCCCcccccCccceeecccccCCCCceecC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999987 5
Q ss_pred cCCCHHHHHHHHHHHHHhc--ccCCCCCCCCCeEEEEEcCCCCChHHHHHHHHHHHHHhhhhhcCCeEEEeeeccccccc
Q 010360 159 DLQPVDVVVSHVLKQILST--ETNYVPITRGNRVVLMINGLGATPVMELMIAAGKAVPNLQLEHGLAVERVYTGSFMTSL 236 (512)
Q Consensus 159 ~~~~a~~lv~~ml~~ll~~--~~~~~~~~~~~~v~vlvNnlG~ts~~El~~~~~~~~~~L~~~~gi~v~r~~~G~~~TSl 236 (512)
+++|+++||.+||++|+++ +|+|++++++|+||+|||||||+|.|||.+++.++.++|+.+|||.|+|.|+|+|||||
T Consensus 231 p~ps~d~lVs~mL~~ll~~~~drs~V~~~~~d~VVllVNNLGG~S~lEl~~ia~~v~~~L~~~y~I~p~R~~~G~fmTsL 310 (582)
T KOG2426|consen 231 PIPSIDELVSQMLPQLLDPTKDRSYVKFEEGDEVVLLVNNLGGVSNLELGIIAGKVVEQLEDEYGIGPVRTFAGTFMTSL 310 (582)
T ss_pred CCCCHHHHHHHHHHHhcCCccccccccccCCCeEEEEEcCCCCcchhhhHHHHHHHHHHHHhhcCccceEEEeeeeeeec
Confidence 6777999999999999998 49999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcceEEEeec---------cHHHHHhhcCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCccccccHHHH
Q 010360 237 DMAGFSISIMKA---------DEVILKHLDATTKAPHWPVGVDGNRPPAKIPVPMPPSHSMKSDESLGRPLQLSQQGHVL 307 (512)
Q Consensus 237 ~m~GfSiTll~l---------d~~~~~~ldap~~a~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (512)
||+||||||||. |+.+++|+|+|+++|+||.......|.. ...+...... ..+.++....+.+.|
T Consensus 311 ng~GfsITll~atka~~~f~~~~s~l~~lda~~~A~~Wp~~~~~~v~~~-----~~~~~s~~~~-~~~~~s~vt~d~~~~ 384 (582)
T KOG2426|consen 311 NGPGFSITLLNATKATKYFDEDTSLLDLLDAPTNAPGWPVAAPGKVPTP-----PISSSSLEHL-ESEKKSGVTVDAQKF 384 (582)
T ss_pred cCCcceEEEEeccccccccCCCccHHHhhhCcccCCCCcccCcccCCCC-----CCCCcchhhc-ccccCCCccccHHHH
Confidence 999999999999 7889999999999999997552221111 1101111111 112233556789999
Q ss_pred HHHHHHHHHHHHHhHHHhhhccCCCCCCchhHHHHHHHHHHHHHhhh-cCCCCCHHHHHHHHHHHHHHhcCCchhhHHHH
Q 010360 308 EVTIEAAAEAVVNLRDRLNEWDSKVGDGDCGSTMYRGATAILEDKKK-YYPLNDAAETVNEIGASIRRVMGGTSGILYHI 386 (512)
Q Consensus 308 ~~~l~~~~~~li~~e~~Ln~LD~~vGDGD~G~tm~~g~~ai~~~l~~-~~~~~~~~~~l~~i~~a~~~~~GGtSG~Ly~~ 386 (512)
..+|.+++++|++.||.||+||+.+||||||+||.+|+++|.+.+++ .++.+++.+++.+|+..++++||||||+||++
T Consensus 385 ~~~l~~~~~~ii~~Ep~lt~~D~~aGDGDCGtTl~~gaeaI~e~~k~~~~~~~~~~~~v~~is~~ie~sMGGTSG~LY~i 464 (582)
T KOG2426|consen 385 AAALKAVAEAIIESEPHLTELDTIAGDGDCGTTLVRGAEAILEALKNDKLPLDDPAQLVKDISDIIEDSMGGTSGALYSI 464 (582)
T ss_pred HHHHHHHHHHHHhcccchhHHhccccCCcchhhhHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhhcCCccHHHHHH
Confidence 99999999999999999999999999999999999999999999975 37889999999999999999999999999999
Q ss_pred HHHHHHHHhhccCCCCCCHHH------HHHHHHHHhhCCCCCCcchhhcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 010360 387 FCKAAYAKLKASSKSGITSKQ------SSIAAVSKYGGATAGYRTMLDALIPAAAVLQERLSAGIDPSTAFILSSEAAIA 460 (512)
Q Consensus 387 ~f~~~a~~l~~~~~~~~~~~~------~al~~i~~~g~A~~GDkTMlDaL~Pa~~al~~~~~~g~~~~~~l~~A~~aA~~ 460 (512)
||.++++.+++...++++... .+++++++||+||||||||+|+|.||++.|.. +++ +.+|+++|++
T Consensus 465 ~lsa~aqgl~~~~~~~it~~~~a~al~~aldal~KYt~Ar~G~rTMiDaL~pfve~~s~----g~d----~~~AvkaA~~ 536 (582)
T KOG2426|consen 465 FLSAAAQGLKQSGQEEITRKTWAEALKVALDALQKYTGARPGDRTMIDALQPFVETFSA----GKD----LLAAVKAAEK 536 (582)
T ss_pred HHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHhcC----Ccc----HHHHHHHHHH
Confidence 999999999976445565544 89999999999999999999999998888764 455 4457999999
Q ss_pred HHHhCccchhhhccccccCCccCCCCCCchHHHHHHHHHHHHHHHH
Q 010360 461 GAESTKHMQAQAGRSTYISPEILASVPDPGAMAAAAWYRAAALAVK 506 (512)
Q Consensus 461 gae~T~~m~A~~GRAsY~gers~g~vpDPGA~av~~il~al~~~~~ 506 (512)
|+|+|++|.|++|||||+++.. +.+|||||++++.|++++.++++
T Consensus 537 gAeaT~~m~A~~GRASYvsd~~-~~~PDpGA~a~aa~l~a~~~a~~ 581 (582)
T KOG2426|consen 537 GAEATAKMQAKVGRASYVSDSE-QTVPDPGAVALAAILRAIVTALK 581 (582)
T ss_pred HHHHHHhhhhhcceeeeecccc-cCCCCchHHHHHHHHHHHHHHhc
Confidence 9999999999999999999765 56899999999999999998875
No 3
>PTZ00375 dihydroxyacetone kinase-like protein; Provisional
Probab=100.00 E-value=1.7e-142 Score=1157.94 Aligned_cols=490 Identities=38% Similarity=0.582 Sum_probs=434.9
Q ss_pred CcceeccCCCCCCCCHHHHHHHHHhccCCCCeEEEeeccccccccHHHHHHHHHhcCCcEEEEEecCcccCCCCCCCCCc
Q 010360 1 MLTAAICGDVFASPPVDSILAGIHAVTGPMGCLLIVTNYTGDRLNFGLAAEQAKSEGYKVEIVIVGDDCALPPPRGIAGR 80 (512)
Q Consensus 1 mL~aav~G~vFaSPs~~~i~~ai~~~~~~~Gvl~iv~NYtGD~lnFg~A~e~a~~~G~~v~~v~v~DDva~~~~~~~~gR 80 (512)
||||||||+||||||++||+++||+|++++|||||||||||||||||||+|+||++||+|++|+|+||||++ +.+++||
T Consensus 70 ml~aav~G~vFaSPs~~qi~~ai~~v~~~~Gvl~ivkNYtGD~lnF~lA~e~a~~eGi~v~~v~v~DDva~~-~~~~~~R 148 (584)
T PTZ00375 70 WLTAAVCGSVFASPSTKHVLAAIEYVPNGPGCLLIVKNYTGDILNFELAVEQARARGIQVETVLVADDAAFG-TKDIANR 148 (584)
T ss_pred ccceeecccccCCCCHHHHHHHHHHhcCCCCEEEEecccHHHHhhHHHHHHHHHhCCCcEEEEEeCCccCCC-CCCCCCC
Confidence 899999999999999999999999999999999999999999999999999999999999999999999997 3458899
Q ss_pred cccchhhhHHHHHhHHHHcCCCHHHHHHHHHHHHhhhcccceeccccccCCCCCCCCcCCCeeEEeccccCCCCcccccC
Q 010360 81 RGLAGTILVNKIAGAAAAAGLSLADVAAEAKRASEMVGTMGVALSVCTLPGQVTSDRLGPGKMELGLGIHGEPGAAVADL 160 (512)
Q Consensus 81 RG~aG~v~v~Ki~GA~A~~G~~l~~v~~~~~~~~~~~~t~gval~~c~~P~~~~~~~l~~~e~E~G~GiHgEpG~~~~~~ 160 (512)
||+|||||||||+||+|++|+||+||.++++++++|++||||+|++||+||....|+|++||||||||||||||++|.++
T Consensus 149 RG~AGtv~v~KiaGAaA~~G~~L~ev~~~a~~~~~~~~tigval~~c~~Pg~~~~~~l~~~~~E~G~GIHgEpG~~~~~~ 228 (584)
T PTZ00375 149 RGIAGTVLLYKILGAAAEKGASLTQLKKLADRISSNMRSIGVSLSSCSLPGNDPSSTVPPGTMEVGLGIHGEKGLARIPF 228 (584)
T ss_pred cchhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcceeeeeccccccCCCCCCCCCCCCceEecccccCCCccccCCC
Confidence 99999999999999999999999999999999999999999999999999944489999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhcc--c---CCCCCCCCCeEEEEEcCCCCChHHHHHHHHHHHHHhhhhhcCCeEEEeeecccccc
Q 010360 161 QPVDVVVSHVLKQILSTE--T---NYVPITRGNRVVLMINGLGATPVMELMIAAGKAVPNLQLEHGLAVERVYTGSFMTS 235 (512)
Q Consensus 161 ~~a~~lv~~ml~~ll~~~--~---~~~~~~~~~~v~vlvNnlG~ts~~El~~~~~~~~~~L~~~~gi~v~r~~~G~~~TS 235 (512)
+++++|+++|+++|+++- + +|++++++|+|+|||||||+||++|||++++++.++|+++ ||+|+|+|+|+||||
T Consensus 229 ~~a~~l~~~l~~~ll~~~~~~~~~~~~~~~~~d~v~vlvN~LG~t~~~El~i~~~~v~~~l~~~-gi~v~~~~vG~~~TS 307 (584)
T PTZ00375 229 QGAKDLVKFLIGILLGKGKKRGGGKTTAIREGAKVALLVNNLGSTTDLEMSILAHHALRQLAQA-GLTVVGVHSGRLMTS 307 (584)
T ss_pred CCHHHHHHHHHHHHHhhhhccccccccCCCCCCeEEEEEcCCCCCcHHHHHHHHHHHHHHHHHC-CCeEEEEeeeccccc
Confidence 999999999999999851 1 2458889999999999999999999999999999999888 999999999999999
Q ss_pred cCCCcceEEEeeccH-HHHH--------hhcCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCccccccHHH
Q 010360 236 LDMAGFSISIMKADE-VILK--------HLDATTKAPHWPVGVDGNRPPAKIPVPMPPSHSMKSDESLGRPLQLSQQGHV 306 (512)
Q Consensus 236 l~m~GfSiTll~ld~-~~~~--------~ldap~~a~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (512)
|||+|||||||++|+ +|++ |||+||++|+||.... +... .... . .. .... .++..+...+.
T Consensus 308 ldm~G~SlTll~l~d~~~~~~~~~p~~~lldapt~apaw~~~~~---~~~~--~~~~--~-~~-~~~~-~~~~~~~~~~~ 377 (584)
T PTZ00375 308 LEMHGFSLTLLPIEDEDDLQLLDTNQKPLLNFHTPQSSWATAKG---PLSA--LQLA--K-PE-AEAA-SRKAATPTNSL 377 (584)
T ss_pred cCCCccEEEEEecCcHHHHHHhccccHhhhCCCCCCCCCCCCCC---Cccc--cccc--c-cc-cccc-CccccchhHHH
Confidence 999999999999964 5999 8888899999976321 1000 0000 0 00 0000 11111012477
Q ss_pred HHHHHHHHHHHHHHhHHHhhhccCCCCCCchhHHHHHHHHHHHHHhhhcCCC-CCHHHHHHHHHHHHHHhcCCchhhHHH
Q 010360 307 LEVTIEAAAEAVVNLRDRLNEWDSKVGDGDCGSTMYRGATAILEDKKKYYPL-NDAAETVNEIGASIRRVMGGTSGILYH 385 (512)
Q Consensus 307 ~~~~l~~~~~~li~~e~~Ln~LD~~vGDGD~G~tm~~g~~ai~~~l~~~~~~-~~~~~~l~~i~~a~~~~~GGtSG~Ly~ 385 (512)
++++|+++|+.|+++|++||+||+++||||||+||.+||++|.+.++. ++. .++.++|..+++++++.|||||||||+
T Consensus 378 l~~~l~~~~~~l~~~e~~Lt~LD~~iGDGDhG~tm~rG~~ai~~~l~~-~~~~~~~~~~l~~ig~a~~~~vGGSSG~Lyg 456 (584)
T PTZ00375 378 LRSVLERVFETLIESENYLNELDAEVGDGDLGSGLERSSKAVLESLPY-LPLEANVRKTLTLISKAVADAFGGSSGPLYG 456 (584)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHhccccCCcHHHHHHHHHHHHHHHhhh-ccccCCHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 999999999999999999999999999999999999999999999983 554 689999999999999999999999999
Q ss_pred HHHHHHHHHhhccCCCCCCHHH------HHHHHHHHhhCCCCCCcchhhcHHHHHHHHHHHHh--CCCCHHHHHHHHHHH
Q 010360 386 IFCKAAYAKLKASSKSGITSKQ------SSIAAVSKYGGATAGYRTMLDALIPAAAVLQERLS--AGIDPSTAFILSSEA 457 (512)
Q Consensus 386 ~~f~~~a~~l~~~~~~~~~~~~------~al~~i~~~g~A~~GDkTMlDaL~Pa~~al~~~~~--~g~~~~~~l~~A~~a 457 (512)
+||+++++.+++......+... +++++|++||+|++|||||||+|+||+++|++..+ ++.++.++|++|+++
T Consensus 457 ~~f~~aa~~l~~~~~g~~~~~~~a~al~a~~eaI~~rG~Ak~GDKTMlDaL~Pa~~al~~~~~~~~~~~~~~~l~~Aa~a 536 (584)
T PTZ00375 457 AFLLGGANALAEALNGGNAVDAVRAALAAGSHSIQELGGARVGDRTMVDVLIPFAEALNSCPSVNEAASSPELLKACSEE 536 (584)
T ss_pred HHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHHHHHhcCCCCCCeeeeeeHHHHHHHHHHhhhcccCCCHHHHHHHHHHH
Confidence 9999999999742100112222 99999999999999999999999999999988664 678899999999999
Q ss_pred HHHHHHhCccchhhhccccccCCccCCCCCCchHHHHHHHHHHHHHH
Q 010360 458 AIAGAESTKHMQAQAGRSTYISPEILASVPDPGAMAAAAWYRAAALA 504 (512)
Q Consensus 458 A~~gae~T~~m~A~~GRAsY~gers~g~vpDPGA~av~~il~al~~~ 504 (512)
|++|+|+|++|.|++|||+|+|||++|+ |||||+++++||+++++.
T Consensus 537 A~~Gae~Tk~m~A~~GRAsylgerslG~-~DPGA~s~~~i~~al~~~ 582 (584)
T PTZ00375 537 AREAAEATALLPAKHGRSRYLEGKELGK-KDPGAELVVAWVEALASE 582 (584)
T ss_pred HHHHHHhhhccccccCccccccccccCC-CCccHHHHHHHHHHHHhh
Confidence 9999999999999999999999999965 699999999999999754
No 4
>TIGR02361 dak_ATP dihydroxyacetone kinase, ATP-dependent. This family consists of examples of the form of dihydroxyacetone kinase (also called glycerone kinase) that uses ATP (2.7.1.29) as the phosphate donor, rather than a phosphoprotein as in E. coli. This form is composed of a single chain with separable domains homologous to the K and L subunits of the E. coli enzyme, and is found in yeasts and other eukaryotes and in some bacteria, including Citrobacter freundii. The member from tomato has been shown to phosphorylate dihydroxyacetone, 3,4-dihydroxy-2-butanone, and some other aldoses and ketoses (PubMed:11985845).
Probab=100.00 E-value=1.1e-140 Score=1147.18 Aligned_cols=490 Identities=48% Similarity=0.740 Sum_probs=432.9
Q ss_pred CcceeccCCCCCCCCHHHHHHHHHhccC-CCCeEEEeeccccccccHHHHHHHHHhcCCcEEEEEecCcccCCCCC-CCC
Q 010360 1 MLTAAICGDVFASPPVDSILAGIHAVTG-PMGCLLIVTNYTGDRLNFGLAAEQAKSEGYKVEIVIVGDDCALPPPR-GIA 78 (512)
Q Consensus 1 mL~aav~G~vFaSPs~~~i~~ai~~~~~-~~Gvl~iv~NYtGD~lnFg~A~e~a~~~G~~v~~v~v~DDva~~~~~-~~~ 78 (512)
|||||||||||||||++||++|||++++ ++|||||||||||||||||||+|+||++||+|++|+|+||||+++.+ .++
T Consensus 66 ml~aav~G~vFaSPs~~~i~~ai~~~~~~~~Gvl~iv~NYtGD~lnF~~A~e~a~~eg~~v~~v~v~DDva~~~~~~~~~ 145 (574)
T TIGR02361 66 MLTAAVAGDVFASPSTKQILAAIRAVVGSEAGTLLIVKNYTGDRLNFGLAAEKAKAEGYNVEMVIVGDDVSVGRKKGGLV 145 (574)
T ss_pred ccceeeeccccCCCCHHHHHHHHHHhcCCCCcEEEEecccHHHhhhHHHHHHHHHhCCCcEEEEEeCCccCCCCccCCCC
Confidence 9999999999999999999999999999 99999999999999999999999999999999999999999998743 478
Q ss_pred CccccchhhhHHHHHhHHHHcCCCHHHHHHHHHHHHhhhcccceeccccccCCCCCCC-CcCCCeeEEeccccCCCCccc
Q 010360 79 GRRGLAGTILVNKIAGAAAAAGLSLADVAAEAKRASEMVGTMGVALSVCTLPGQVTSD-RLGPGKMELGLGIHGEPGAAV 157 (512)
Q Consensus 79 gRRG~aG~v~v~Ki~GA~A~~G~~l~~v~~~~~~~~~~~~t~gval~~c~~P~~~~~~-~l~~~e~E~G~GiHgEpG~~~ 157 (512)
||||+|||||||||+||+|++|+||+||+++++++++|++||||+|++||+||+++.| +|++||||||||||||||++|
T Consensus 146 ~RRGlAGtv~v~KiaGAaA~~G~~L~ev~~~~~~~~~~~~Tigval~~c~~Pg~~~~~~~l~~~e~E~G~GiHgEpG~~~ 225 (574)
T TIGR02361 146 GRRGLAGTVLVHKIAGAAAARGLSLAEVAKVAQAAADNLVTIGASLDHCHVPGETEAEPELKEDEMELGMGIHNEPGAKR 225 (574)
T ss_pred CCCchhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhhcceeeeeccccccCCCCCCCCCCCCCceEeccccCCCCCCCC
Confidence 9999999999999999999999999999999999999999999999999999976655 999999999999999999999
Q ss_pred ccCCC-HHHHHHHHHHHHHhcc--cCCCCCCCCCeEEEEEcCCCCChHHHHHHHHHHHHHhhhhhcCCeEEEeeeccccc
Q 010360 158 ADLQP-VDVVVSHVLKQILSTE--TNYVPITRGNRVVLMINGLGATPVMELMIAAGKAVPNLQLEHGLAVERVYTGSFMT 234 (512)
Q Consensus 158 ~~~~~-a~~lv~~ml~~ll~~~--~~~~~~~~~~~v~vlvNnlG~ts~~El~~~~~~~~~~L~~~~gi~v~r~~~G~~~T 234 (512)
.++.| +++++++|+++|++++ |+|++++++|+|+|||||||+||+||||++++++.++|++++||+|+|+|+|+|||
T Consensus 226 ~~~~~a~~~l~~~l~~~l~~~~d~r~~~~~~~~d~v~~lvN~lG~t~~~El~i~~~~~~~~l~~~~~i~v~~~~~G~~~T 305 (574)
T TIGR02361 226 ISPIPSSDLVVQLMLKKLLDETDKRSYVKFNEGDEVVLLVNNLGGVSNLELGIIADEVVEQLALHYNIIPVRIYSGTFMT 305 (574)
T ss_pred CCCCChHHHHHHHHHHHHhccccccccCCCCCCCeEEEEEeCCCCCCHHHHHHHHHHHHHHHHhCCCceEEEEeeecccc
Confidence 99999 6669999999999863 67889999999999999999999999999999999999888579999999999999
Q ss_pred ccCCCcceEEEeeccH---HHHHhhcCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCccccccHHHHHHHH
Q 010360 235 SLDMAGFSISIMKADE---VILKHLDATTKAPHWPVGVDGNRPPAKIPVPMPPSHSMKSDESLGRPLQLSQQGHVLEVTI 311 (512)
Q Consensus 235 Sl~m~GfSiTll~ld~---~~~~~ldap~~a~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 311 (512)
||||+||||||+++|+ +|++|||+||++|+||.......+............ . ...........+...+++||
T Consensus 306 sl~m~G~SlTl~~ld~~~~e~~~~ldap~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~l~~~l 381 (574)
T TIGR02361 306 SLNGPGFSITLLNATEAGKSILDLLDAPTEAPGWPVAAYSSKPWREKREVVSSSA-P---ELIEETAVRSYDPQLVAAIL 381 (574)
T ss_pred cCCCCccEEEEEecCCChHHHHHHhCCCCCCcCCCCCCccccccccccccccccc-c---ccccCCCcccCCHHHHHHHH
Confidence 9999999999999999 999999999999999753211101000000001000 0 00010111123578899999
Q ss_pred HHHHHHHHHhHHHhhhccCCCCCCchhHHHHHHHHHHHHHhhh-cCCCCCHHHHHHHHHHHHHHhcCCchhhHHHHHHHH
Q 010360 312 EAAAEAVVNLRDRLNEWDSKVGDGDCGSTMYRGATAILEDKKK-YYPLNDAAETVNEIGASIRRVMGGTSGILYHIFCKA 390 (512)
Q Consensus 312 ~~~~~~li~~e~~Ln~LD~~vGDGD~G~tm~~g~~ai~~~l~~-~~~~~~~~~~l~~i~~a~~~~~GGtSG~Ly~~~f~~ 390 (512)
+++|+.|++++++||+||+.+||||||+||.+|+++|.+.++. .++..++.++|..+++++++.||||||+|||+||++
T Consensus 382 ~~~~~~l~~~~d~Ln~LD~~vGDGD~G~tm~~G~~ai~~~l~~~~~~~~~~~~~l~~ig~a~~~~~GGtSG~Lyg~~f~~ 461 (574)
T TIGR02361 382 ESGCAALLELEPHLTKLDTKAGDGDCGSTLARGAEAILELLKSKKLPLNDPATLLAQISDVVEGVMGGTSGALYSIFFSA 461 (574)
T ss_pred HHHHHHHHHhHHHHHHhcCCcCCCchHHHHHHHHHHHHHhhhcccCCCCCHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999872 134568999999999999999999999999999999
Q ss_pred HHHHhhccC--CCCCCHHH------HHHHHHHHhhCCCCCCcchhhcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Q 010360 391 AYAKLKASS--KSGITSKQ------SSIAAVSKYGGATAGYRTMLDALIPAAAVLQERLSAGIDPSTAFILSSEAAIAGA 462 (512)
Q Consensus 391 ~a~~l~~~~--~~~~~~~~------~al~~i~~~g~A~~GDkTMlDaL~Pa~~al~~~~~~g~~~~~~l~~A~~aA~~ga 462 (512)
+++.+++.. .++++..+ +++++|++||+|+||||||||+|+||++++++..+ .|++|+++|++|+
T Consensus 462 ~a~~l~~~~~~~~~~~~~~~a~al~aa~eai~~~G~A~pGDkTMLDaL~Pa~~al~~~~~-------~l~~A~~aA~~ga 534 (574)
T TIGR02361 462 AAQSLKQNASKKEEITPEAWAAALKTALDALYKYTGARPGDRTMIDALQPFVEALEAGKS-------NLNAAVKAAEAGA 534 (574)
T ss_pred HHHHHhhccccccCCCHHHHHHHHHHHHHHHHHhcCCCCCCCeeeeeHHHHHHHHHHHHH-------HHHHHHHHHHHHH
Confidence 999998621 13555444 89999999999999999999999999999987432 1889999999999
Q ss_pred HhCccchhhhccccccCCcc-CCCCCCchHHHHHHHHHHHH
Q 010360 463 ESTKHMQAQAGRSTYISPEI-LASVPDPGAMAAAAWYRAAA 502 (512)
Q Consensus 463 e~T~~m~A~~GRAsY~gers-~g~vpDPGA~av~~il~al~ 502 (512)
++|++|+|++|||+|+|+|+ .|+ |||||+++++||++|+
T Consensus 535 e~T~~m~A~~GRAsYlgers~~Gv-~DPGA~~~~~il~al~ 574 (574)
T TIGR02361 535 EATKKMKAKAGRASYVSSEALEGV-PDPGAVGLAAWLRGLA 574 (574)
T ss_pred HhChhhhhhhcccccccccccCCC-CCccHHHHHHHHHHhC
Confidence 99999999999999999998 555 5999999999999873
No 5
>PRK14481 dihydroxyacetone kinase subunit DhaK; Provisional
Probab=100.00 E-value=4e-101 Score=783.62 Aligned_cols=262 Identities=47% Similarity=0.753 Sum_probs=257.0
Q ss_pred CcceeccCCCCCCCCHHHHHHHHHhccCCCCeEEEeeccccccccHHHHHHHHHhcCCcEEEEEecCcccCCCCCCCCCc
Q 010360 1 MLTAAICGDVFASPPVDSILAGIHAVTGPMGCLLIVTNYTGDRLNFGLAAEQAKSEGYKVEIVIVGDDCALPPPRGIAGR 80 (512)
Q Consensus 1 mL~aav~G~vFaSPs~~~i~~ai~~~~~~~Gvl~iv~NYtGD~lnFg~A~e~a~~~G~~v~~v~v~DDva~~~~~~~~gR 80 (512)
||||||||+||||||++||++|||++++++|||+||||||||+||||||+|+|+++||+|++|+|+||||+++++.++||
T Consensus 68 mLdaav~G~VFaSPs~~~Il~ai~av~~~~GvL~iv~NYtGD~lnF~lA~E~a~~eGi~v~~V~v~DDva~~~~~~~~~R 147 (331)
T PRK14481 68 MLDAAVCGAVFTSPTPDQILEAIKAVDTGAGVLLIVKNYSGDVMNFEMAAELAEMEGIEVASVVVDDDVAVEDSLYTQGR 147 (331)
T ss_pred ccceeeeccccCCCCHHHHHHHHHhccCCCCEEEEeCCcHHHhccHHHHHHHHHhCCCCEEEEEeCCcccCCCCccCCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999877778899
Q ss_pred cccchhhhHHHHHhHHHHcCCCHHHHHHHHHHHHhhhcccceeccccccCC-CCCCCCcCCCeeEEeccccCCCCccccc
Q 010360 81 RGLAGTILVNKIAGAAAAAGLSLADVAAEAKRASEMVGTMGVALSVCTLPG-QVTSDRLGPGKMELGLGIHGEPGAAVAD 159 (512)
Q Consensus 81 RG~aG~v~v~Ki~GA~A~~G~~l~~v~~~~~~~~~~~~t~gval~~c~~P~-~~~~~~l~~~e~E~G~GiHgEpG~~~~~ 159 (512)
||+|||||||||+||+|++|+||+||+++++++++|++||||+|++||+|| ++|+|+|++||||||||||||||++|.+
T Consensus 148 RGlAG~vlv~KiaGAaA~~G~sL~ev~~~a~~~~~~~~Tigval~~ct~Pg~~~~~f~l~~~emE~GmGIHGEpG~~r~~ 227 (331)
T PRK14481 148 RGVAGTVFVHKIAGAAAEAGASLDEVKALAEKVNPNIRSMGVALSPCTVPAVGKPGFDLGDDEIEIGIGIHGEPGRRREK 227 (331)
T ss_pred CchhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhhcceeeecccccccCCCCCCCCccCCCcEEeccccCCCCccccCC
Confidence 999999999999999999999999999999999999999999999999999 6799999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEcCCCCChHHHHHHHHHHHHHhhhhhcCCeEEEeeecccccccCCC
Q 010360 160 LQPVDVVVSHVLKQILSTETNYVPITRGNRVVLMINGLGATPVMELMIAAGKAVPNLQLEHGLAVERVYTGSFMTSLDMA 239 (512)
Q Consensus 160 ~~~a~~lv~~ml~~ll~~~~~~~~~~~~~~v~vlvNnlG~ts~~El~~~~~~~~~~L~~~~gi~v~r~~~G~~~TSl~m~ 239 (512)
++++++++++|+++|+++ ++++++|+++|||||||+||.||||++++++.++|+++ ||+|+|+|+|+|||||||+
T Consensus 228 ~~~a~~l~~~m~~~ll~~----~~~~~gd~v~lLvN~LG~ts~lEl~i~~~~v~~~L~~~-gi~i~r~~vG~~~TSldm~ 302 (331)
T PRK14481 228 LKPADEIAEELLEKILED----LKLVAGDEVLVLVNGMGATPLMELYIVYNDVAELLEER-GVTVARSLVGNYMTSLDMA 302 (331)
T ss_pred CCCHHHHHHHHHHHHHhh----cCCCCCCeEEEEEeCCCCCcHHHHHHHHHHHHHHHHHC-CCEEEEEEeecccccCCCC
Confidence 999999999999999986 58999999999999999999999999999999999887 9999999999999999999
Q ss_pred cceEEEeeccHHHHHhhcCcCCCCCCCC
Q 010360 240 GFSISIMKADEVILKHLDATTKAPHWPV 267 (512)
Q Consensus 240 GfSiTll~ld~~~~~~ldap~~a~~w~~ 267 (512)
|||||||++|++|++|||+||++|+|||
T Consensus 303 G~SiTLl~ld~el~~~ldap~~~~~w~~ 330 (331)
T PRK14481 303 GFSITLLKLDDELLELLDAPVDTPALRW 330 (331)
T ss_pred ceEEEEeecCHHHHHHhCCCCcCCCCCC
Confidence 9999999999999999999999999986
No 6
>TIGR02363 dhaK1 dihydroxyacetone kinase, DhaK subunit. Two types of dihydroxyacetone kinase (glycerone kinase) are described. In yeast and a few bacteria, e.g. Citrobacter freundii, the enzyme is a single chain that uses ATP as phosphoryl donor and is designated EC 2.7.1.29. By contract, E. coli and many other bacterial species have a multisubunit form (EC 2.7.1.-) with a phosphoprotein donor related to PTS transport proteins. This family represents the DhaK subunit of the latter type of dihydroxyacetone kinase, but it specifically excludes the DhaK paralog DhaK2 (TIGR02362) found in the same operon as DhaK and DhaK in the Firmicutes.
Probab=100.00 E-value=6.4e-101 Score=781.60 Aligned_cols=260 Identities=43% Similarity=0.704 Sum_probs=255.4
Q ss_pred CcceeccCCCCCCCCHHHHHHHHHhccCCCCeEEEeeccccccccHHHHHHHHHhcCCcEEEEEecCcccCCCCCCCCCc
Q 010360 1 MLTAAICGDVFASPPVDSILAGIHAVTGPMGCLLIVTNYTGDRLNFGLAAEQAKSEGYKVEIVIVGDDCALPPPRGIAGR 80 (512)
Q Consensus 1 mL~aav~G~vFaSPs~~~i~~ai~~~~~~~Gvl~iv~NYtGD~lnFg~A~e~a~~~G~~v~~v~v~DDva~~~~~~~~gR 80 (512)
||||||||+||||||++||++|||++++++|||+||||||||+||||||+|+|+++||+|++|+|+||||+++++.++||
T Consensus 69 mLdAav~G~VFaSPs~~~I~~ai~av~~~~GvL~iv~NYtGD~lnF~mA~E~a~~eGi~v~~V~V~DDva~~~~~~~~~R 148 (329)
T TIGR02363 69 MLDAAVPGEVFTSPTPDQILEAIKAVDQGAGVLLIVKNYTGDVMNFEMAAELAEDEGIKVATVVVDDDIAVEDSLYTAGR 148 (329)
T ss_pred ccceeeeccccCCCCHHHHHHHHHhccCCCCEEEEeCCcHHHhccHHHHHHHHHHcCCcEEEEEECCcccCCCCccCCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999877668899
Q ss_pred cccchhhhHHHHHhHHHHcCCCHHHHHHHHHHHHhhhcccceeccccccCC-CCCCCCcCCCeeEEeccccCCCCccccc
Q 010360 81 RGLAGTILVNKIAGAAAAAGLSLADVAAEAKRASEMVGTMGVALSVCTLPG-QVTSDRLGPGKMELGLGIHGEPGAAVAD 159 (512)
Q Consensus 81 RG~aG~v~v~Ki~GA~A~~G~~l~~v~~~~~~~~~~~~t~gval~~c~~P~-~~~~~~l~~~e~E~G~GiHgEpG~~~~~ 159 (512)
||+|||||||||+||+|++|+||+||+++++++++|++||||+|++||+|| ++|+|+|++||||||||||||||++|.+
T Consensus 149 RGlAGtv~v~KiaGAaAe~G~sL~ev~~~a~~~~~~~~TiGval~~ctvPg~~~~~f~l~~~emE~GmGIHGEpG~~r~~ 228 (329)
T TIGR02363 149 RGVAGTVFVHKIAGAAAEKGASLDELKSLGEKVNPNTKSIGVALTACTVPAVGKPGFDLADDEMEIGVGIHGEPGIRREK 228 (329)
T ss_pred cchhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcceeeecccccccCCCCCCCcccCCCcEEeccccCCCCccccCC
Confidence 999999999999999999999999999999999999999999999999999 7899999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEcCCCCChHHHHHHHHHHHHHhhhhhcCCeEEEeeecccccccCCC
Q 010360 160 LQPVDVVVSHVLKQILSTETNYVPITRGNRVVLMINGLGATPVMELMIAAGKAVPNLQLEHGLAVERVYTGSFMTSLDMA 239 (512)
Q Consensus 160 ~~~a~~lv~~ml~~ll~~~~~~~~~~~~~~v~vlvNnlG~ts~~El~~~~~~~~~~L~~~~gi~v~r~~~G~~~TSl~m~ 239 (512)
+.|+++++++|+++|+++ ++++++|+|+|||||||+||++|||++++++.++|+++ ||+|+|+|+|+|||||||+
T Consensus 229 ~~~a~~l~~~l~~~l~~~----~~~~~gd~v~vlvN~LG~ts~lEl~i~~~~v~~~L~~~-gi~v~r~~vG~~~TSldm~ 303 (329)
T TIGR02363 229 MKSSDEIADELLDKLLDD----LGLQSGDRVIVLVNGMGATPLMELYIFYNDVQRLLEQR-GVNVARTLVGNYMTSLDMA 303 (329)
T ss_pred CCCHHHHHHHHHHHHHhh----cCCCCCCeEEEEEeCCCCCCHHHHHHHHHHHHHHHHHC-CCEEEEEEeecccccCCCC
Confidence 999999999999999996 68899999999999999999999999999999999888 9999999999999999999
Q ss_pred cceEEEeeccHHHHHhhcCcCCCCCC
Q 010360 240 GFSISIMKADEVILKHLDATTKAPHW 265 (512)
Q Consensus 240 GfSiTll~ld~~~~~~ldap~~a~~w 265 (512)
||||||+++|++|++|||+||++|+|
T Consensus 304 G~SiTLl~ld~el~~~ldap~~~~~w 329 (329)
T TIGR02363 304 GFSLTLLKLDDELLELWDAPVTTIAL 329 (329)
T ss_pred ceEEEEeeCCHHHHHHhCCCCCCCCC
Confidence 99999999999999999999999999
No 7
>PRK11468 dihydroxyacetone kinase subunit DhaK; Provisional
Probab=100.00 E-value=1.1e-100 Score=782.87 Aligned_cols=266 Identities=39% Similarity=0.632 Sum_probs=258.1
Q ss_pred CcceeccCCCCCCCCHHHHHHHHHhccCCCCeEEEeeccccccccHHHHHHHHHhcCCcEEEEEecCcccCCCCCCCCCc
Q 010360 1 MLTAAICGDVFASPPVDSILAGIHAVTGPMGCLLIVTNYTGDRLNFGLAAEQAKSEGYKVEIVIVGDDCALPPPRGIAGR 80 (512)
Q Consensus 1 mL~aav~G~vFaSPs~~~i~~ai~~~~~~~Gvl~iv~NYtGD~lnFg~A~e~a~~~G~~v~~v~v~DDva~~~~~~~~gR 80 (512)
||||||||+||||||++||++|||++++++|||+|||||||||||||||+|+|+++||+|++|+|+||||++++++++||
T Consensus 68 mLdAAv~G~VFaSPs~~qI~~ai~av~~~~GvLlivkNYtGDvlNF~mAaE~a~~eGi~v~~V~V~DDva~~~~~~~~gR 147 (356)
T PRK11468 68 MLDGACPGEIFTSPTPDQMFECAMQVDGGEGVLLIIKNYTGDVLNFETATELLHDSGVKVTTVLIDDDVAVKDSLYTAGR 147 (356)
T ss_pred cccceeeccccCCCCHHHHHHHHHhhcCCCCEEEEecccHHhhccHHHHHHHHHhCCCcEEEEEeCCcccCCCCcCCCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999877778999
Q ss_pred cccchhhhHHHHHhHHHHcCCCHHHHHHHHHHHHhhhcccceeccccccCC-CCCCCCcCCCeeEEeccccCCCCccccc
Q 010360 81 RGLAGTILVNKIAGAAAAAGLSLADVAAEAKRASEMVGTMGVALSVCTLPG-QVTSDRLGPGKMELGLGIHGEPGAAVAD 159 (512)
Q Consensus 81 RG~aG~v~v~Ki~GA~A~~G~~l~~v~~~~~~~~~~~~t~gval~~c~~P~-~~~~~~l~~~e~E~G~GiHgEpG~~~~~ 159 (512)
||+|||||||||+||+|++|+||+||+++++++++|++||||+|++||+|+ ++|+|+|++||||||||||||||++|.+
T Consensus 148 RGlAGtvlv~KiaGAaAe~G~sL~ev~~~a~~~~~~~~TiGvaL~~ctvP~~~~~~f~L~~~emE~GmGIHGEpG~~r~~ 227 (356)
T PRK11468 148 RGVANTVLIEKLVGAAAERGYSLDQCAELGRKLNNQGHSIGIALGACTVPAAGKPSFTLADNEMEFGVGIHGEPGIDRRP 227 (356)
T ss_pred cchhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcceeeeeccccccCCCCCCCcccCCCcEEeccccCCCCccccCC
Confidence 999999999999999999999999999999999999999999999999999 7899999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhcc---------------------cCCCCCCCCCeEEEEEcCCCCChHHHHHHHHHHHHHhhhh
Q 010360 160 LQPVDVVVSHVLKQILSTE---------------------TNYVPITRGNRVVLMINGLGATPVMELMIAAGKAVPNLQL 218 (512)
Q Consensus 160 ~~~a~~lv~~ml~~ll~~~---------------------~~~~~~~~~~~v~vlvNnlG~ts~~El~~~~~~~~~~L~~ 218 (512)
+.|+++++++|+++|+++. |. ++++++|+|+|||||||+||.+|||++++++.++|++
T Consensus 228 ~~~a~elv~~l~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~gd~v~vLVNgLG~t~~~El~i~~~~v~~~L~~ 306 (356)
T PRK11468 228 FSSLDQTVDEMFDTLLENGSYHRTLRFWDRQQGSWQEEEQTK-QPLQSGDRVIALVNNLGATPLSELYGVYNRLATRCEQ 306 (356)
T ss_pred CCCHHHHHHHHHHHHHcCcccccchhcccccccccccccccc-CCCCCCCeEEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999862 23 4888999999999999999999999999999999988
Q ss_pred hcCCeEEEeeecccccccCCCcceEEEeeccHHHHHhhcCcCCCCCCCCC
Q 010360 219 EHGLAVERVYTGSFMTSLDMAGFSISIMKADEVILKHLDATTKAPHWPVG 268 (512)
Q Consensus 219 ~~gi~v~r~~~G~~~TSl~m~GfSiTll~ld~~~~~~ldap~~a~~w~~~ 268 (512)
+ ||+|+|+|+|+|||||||+|||||||++|++|++|||+||++|+|+|+
T Consensus 307 ~-gi~v~r~~vG~~~TSldm~G~SiTLl~lddel~~lldap~~~~~w~~~ 355 (356)
T PRK11468 307 A-GLTIERNLIGAYCTSLDMQGFSITLLKVDDETLALWDAPVHTPALRWG 355 (356)
T ss_pred C-CCEEEEeeeecccccCCCCceEEEEeecCHHHHHHhCCCCCCcccccC
Confidence 8 999999999999999999999999999999999999999999999764
No 8
>TIGR02362 dhaK1b probable dihydroxyacetone kinase DhaK1b subunit. Two types of dihydroxyacetone kinase (glycerone kinase) are described. In yeast and a few bacteria, e.g. Citrobacter freundii, the enzyme is a single chain that uses ATP as phosphoryl donor and is designated EC 2.7.1.29. By contract, E. coli and many other bacterial species have a multisubunit form with a phosphoprotein donor related to PTS transport proteins. This family represents a protein, unique to the Firmicutes (low GC Gram-positives), that appears to be a divergent second copy of the K subunit of that complex; its gene is always found in operons with the other three proteins of the complex.
Probab=100.00 E-value=1.4e-100 Score=778.30 Aligned_cols=260 Identities=35% Similarity=0.551 Sum_probs=252.8
Q ss_pred CcceeccCCCCCCCCHHHHHHHHHhccCCCCeEEEeeccccccccHHHHHHHHHhcCCcEEEEEecCcccCCCCCCCCCc
Q 010360 1 MLTAAICGDVFASPPVDSILAGIHAVTGPMGCLLIVTNYTGDRLNFGLAAEQAKSEGYKVEIVIVGDDCALPPPRGIAGR 80 (512)
Q Consensus 1 mL~aav~G~vFaSPs~~~i~~ai~~~~~~~Gvl~iv~NYtGD~lnFg~A~e~a~~~G~~v~~v~v~DDva~~~~~~~~gR 80 (512)
||||||||+||||||++||++|||++++++|||+||||||||+||||||+|+|+++||+|++|+|+||||++++....||
T Consensus 65 mLdAav~G~VFaSPs~~~I~~ai~av~~~~GvL~ivkNYtGD~lNF~mA~E~a~~eGi~v~~V~V~DDvA~~~~~~~~~R 144 (326)
T TIGR02362 65 MLSAAIMGDVFVPPTAQDILEAIRQVDRGKGVFVIIKNFEADLSEFSQAIQQARQEGRQIKYIIVHDDISVEHESFKQRR 144 (326)
T ss_pred ccceeEeccccCCCCHHHHHHHHHhhcCCCCEEEEeccCHHHHhhHHHHHHHHHHcCCcEEEEEECCcccCCCCcccCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999554445699
Q ss_pred cccchhhhHHHHHhHHHHcCCCHHHHHHHHHHHHhhhcccceeccccccCC-CCCCCCcCCCeeEEeccccCCCCccccc
Q 010360 81 RGLAGTILVNKIAGAAAAAGLSLADVAAEAKRASEMVGTMGVALSVCTLPG-QVTSDRLGPGKMELGLGIHGEPGAAVAD 159 (512)
Q Consensus 81 RG~aG~v~v~Ki~GA~A~~G~~l~~v~~~~~~~~~~~~t~gval~~c~~P~-~~~~~~l~~~e~E~G~GiHgEpG~~~~~ 159 (512)
||+|||||||||+||+|++|+||+||+++++++++|++||||+|++||+|| ++|+|+|++||||||||||||||++|.+
T Consensus 145 RGlAGtv~v~KiaGAaAe~G~sL~ev~~~a~~~~~~~~Tigval~~c~~Pg~~~~~f~l~~~emE~G~GIHGEpG~~r~~ 224 (326)
T TIGR02362 145 RGVAGTILVHKILGAAAAEGASLDELEHIAAALVTNIATIGVAAKSARIPGQSTPSFDLEEGEIYYGIGIHGEPGYRTEP 224 (326)
T ss_pred CchhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhhcceeeeccccccCCCCCCCCCccCCCcEEeccccCCCCcccCCC
Confidence 999999999999999999999999999999999999999999999999999 7899999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEcCCCCChHHHHHHHHHHHHHhhhhhcCCeEEEeeecccccccCCC
Q 010360 160 LQPVDVVVSHVLKQILSTETNYVPITRGNRVVLMINGLGATPVMELMIAAGKAVPNLQLEHGLAVERVYTGSFMTSLDMA 239 (512)
Q Consensus 160 ~~~a~~lv~~ml~~ll~~~~~~~~~~~~~~v~vlvNnlG~ts~~El~~~~~~~~~~L~~~~gi~v~r~~~G~~~TSl~m~ 239 (512)
+.++++++++|+++|+++ ++++++|+++|||||||+||+||||++++++.++|+++ ||+|+|+|+|+|||||||+
T Consensus 225 ~~~a~elv~~l~~~ll~~----~~~~~gd~v~vlvN~LG~t~~lEl~i~~~~v~~~L~~~-gi~v~r~~vG~~~TSldm~ 299 (326)
T TIGR02362 225 FVSSEHLAVELVNKLKLK----FRWQADDHYAVLVNNLGGTTPMEQMVFNNDVHELLALE-ALHLPFIKVGTFLTSLDMH 299 (326)
T ss_pred CCCHHHHHHHHHHHHHhh----cCCCCCCEEEEEecCCCCCCHHHHHHHHHHHHHHHHHC-CCEEEEeEeecccCccCCC
Confidence 999999999999999986 58899999999999999999999999999999999888 9999999999999999999
Q ss_pred cceEEEeec-cHHHHHhhcCcCCCCCC
Q 010360 240 GFSISIMKA-DEVILKHLDATTKAPHW 265 (512)
Q Consensus 240 GfSiTll~l-d~~~~~~ldap~~a~~w 265 (512)
|||||||++ |+||++|||+||++|+|
T Consensus 300 G~SiTll~l~d~el~~~ldap~~~~~~ 326 (326)
T TIGR02362 300 GLSLTLLRLKDPQWLDYLNAPVDAAAW 326 (326)
T ss_pred ccEEEEEeCCcHHHHHHhCCCCCCCCC
Confidence 999999999 56999999999999999
No 9
>PRK14483 DhaKLM operon coactivator DhaQ; Provisional
Probab=100.00 E-value=1.7e-100 Score=777.62 Aligned_cols=260 Identities=37% Similarity=0.588 Sum_probs=253.9
Q ss_pred CcceeccCCCCCCCCHHHHHHHHHhccCCCCeEEEeeccccccccHHHHHHHHHhcCCcEEEEEecCcccCCC-CCCCCC
Q 010360 1 MLTAAICGDVFASPPVDSILAGIHAVTGPMGCLLIVTNYTGDRLNFGLAAEQAKSEGYKVEIVIVGDDCALPP-PRGIAG 79 (512)
Q Consensus 1 mL~aav~G~vFaSPs~~~i~~ai~~~~~~~Gvl~iv~NYtGD~lnFg~A~e~a~~~G~~v~~v~v~DDva~~~-~~~~~g 79 (512)
||||||||+||||||++||++|||++++++|||+||||||||+||||||+|+|+++||+|++|+|+||||+++ +++..|
T Consensus 67 mLdAav~G~VFaSPs~~qI~~ai~av~~~~GvL~ivkNYtGDvlnF~mA~E~a~~eGi~v~~VvV~DDva~~~~~~~~~~ 146 (329)
T PRK14483 67 MLTAAVNGSIFTPPTAEQILAATRLVPKGKGVFFIIKNFEADVAEFSAAIQIARQEGRQIKYIIVHDDISVEDDASFNKR 146 (329)
T ss_pred ccceeEeccccCCCCHHHHHHHHHhhcCCCCEEEEecccHHHhhhHHHHHHHHHhCCCcEEEEEeCCcccCCCccccCCC
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999987 655669
Q ss_pred ccccchhhhHHHHHhHHHHcCCCHHHHHHHHHHHHhhhcccceeccccccCC-CCCCCCcCCCeeEEeccccCCCCcccc
Q 010360 80 RRGLAGTILVNKIAGAAAAAGLSLADVAAEAKRASEMVGTMGVALSVCTLPG-QVTSDRLGPGKMELGLGIHGEPGAAVA 158 (512)
Q Consensus 80 RRG~aG~v~v~Ki~GA~A~~G~~l~~v~~~~~~~~~~~~t~gval~~c~~P~-~~~~~~l~~~e~E~G~GiHgEpG~~~~ 158 (512)
|||+|||||||||+||+|++|+||+||+++++++++|++||||+|++||+|| ++|+|+|++||||||||||||||++|.
T Consensus 147 RRGlAGtvlv~KiaGAaA~~G~~L~ev~~~a~~~~~~~~Tigval~~c~vPg~~~~~f~l~~~emE~GmGIHGEpG~~r~ 226 (329)
T PRK14483 147 RRGVAGTVLLHKILGAAALEGASLDELEQLGLSLTENIATLGVALSPANLPVAGLPSFDLNEDEISYGIGIHGEPGYRKE 226 (329)
T ss_pred CCchhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhhcceeeecccccccCCCCCCCcccCCCcEEeccccCCCCcccCC
Confidence 9999999999999999999999999999999999999999999999999999 789999999999999999999999999
Q ss_pred cCCCHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEcCCCCChHHHHHHHHHHHHHhhhhhcCCeEEEeeecccccccCC
Q 010360 159 DLQPVDVVVSHVLKQILSTETNYVPITRGNRVVLMINGLGATPVMELMIAAGKAVPNLQLEHGLAVERVYTGSFMTSLDM 238 (512)
Q Consensus 159 ~~~~a~~lv~~ml~~ll~~~~~~~~~~~~~~v~vlvNnlG~ts~~El~~~~~~~~~~L~~~~gi~v~r~~~G~~~TSl~m 238 (512)
++.|+++++++|+++|+++ ++++++|+|+|||||||+||++|||++++++.++|+++ ||+|+|+|+|+|||||||
T Consensus 227 ~~~~a~~l~~~l~~~ll~~----~~~~~gd~v~vlVN~LG~ts~~El~i~~~~v~~~L~~~-gi~v~r~~vG~~~TSldm 301 (329)
T PRK14483 227 PFSSSEILAIELVNKLKSK----YRWQKGDNFILLINGLGATTLMEQYIFANDIRRLLELE-GLQITFVKVGTLLTSLDM 301 (329)
T ss_pred CCCCHHHHHHHHHHHHHhh----cCcCCCCeEEEEEeCCCCCcHHHHHHHHHHHHHHHHHC-CCEEEEeEeecccCccCC
Confidence 9999999999999999986 58899999999999999999999999999999999888 999999999999999999
Q ss_pred CcceEEEeec-cHHHHHhhcCcCCCCCC
Q 010360 239 AGFSISIMKA-DEVILKHLDATTKAPHW 265 (512)
Q Consensus 239 ~GfSiTll~l-d~~~~~~ldap~~a~~w 265 (512)
+|||||||++ |++|++|||+||++|+|
T Consensus 302 ~G~SiTLl~l~d~el~~~ldap~~~~~w 329 (329)
T PRK14483 302 KGISLTLLKVKDPDWLDWLKAPTRAAAW 329 (329)
T ss_pred CccEEEEEeCCcHHHHHHhcCCCCCCCC
Confidence 9999999999 66999999999999999
No 10
>PF02733 Dak1: Dak1 domain; InterPro: IPR004006 Dihydroxyacetone kinase (glycerone kinase) 2.7.1.29 from EC catalyses the phosphorylation of glycerone in the presence of ATP to glycerone phosphate in the glycerol utilization pathway. This is the kinase domain of the dihydroxyacetone kinase family.; GO: 0004371 glycerone kinase activity, 0006071 glycerol metabolic process; PDB: 1UN8_A 1UN9_B 3PNM_A 1UOD_B 3PNO_D 3PNK_A 3PNQ_B 1OI2_B 1OI3_A 3PNL_A ....
Probab=100.00 E-value=1.1e-101 Score=787.78 Aligned_cols=267 Identities=53% Similarity=0.860 Sum_probs=226.3
Q ss_pred CcceeccCCCCCCCCHHHHHHHHHhccCCCCeEEEeeccccccccHHHHHHHHHhcCCcEEEEEecCcccCCCCCCC-CC
Q 010360 1 MLTAAICGDVFASPPVDSILAGIHAVTGPMGCLLIVTNYTGDRLNFGLAAEQAKSEGYKVEIVIVGDDCALPPPRGI-AG 79 (512)
Q Consensus 1 mL~aav~G~vFaSPs~~~i~~ai~~~~~~~Gvl~iv~NYtGD~lnFg~A~e~a~~~G~~v~~v~v~DDva~~~~~~~-~g 79 (512)
||||||||+||||||++||++|||++++++|||+||||||||+||||||+|+|+++||+|++|+|+||||++++++. +|
T Consensus 52 mLdAav~G~VFaSPs~~qI~~ai~~~~~~~Gvl~iv~NYtGD~lNF~~A~E~a~~~Gi~v~~v~v~DDva~~~~~~~~~g 131 (325)
T PF02733_consen 52 MLDAAVCGDVFASPSADQILAAIKAVDSGKGVLLIVKNYTGDVLNFGMAAEKARAEGIKVEMVIVGDDVASAPSKNSLVG 131 (325)
T ss_dssp SBSEEEEEEETS---HHHHHHHHHHH-SSS-EEEEEESSHHHHHHHHHHHHHHHHTT--EEEEEE--B-SSSSSTTS-SS
T ss_pred ccceEeeCCCcCCCCHHHHHHHHHhccCCCCEEEEEecchHHHhhHHHHHHHHHhCCCCEEEEEecCccccCCccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998875 99
Q ss_pred ccccchhhhHHHHHhHHHHcCCCHHHHHHHHHHHHhhhcccceeccccccCC-CCCCCCcCCCeeEEeccccCCCCcccc
Q 010360 80 RRGLAGTILVNKIAGAAAAAGLSLADVAAEAKRASEMVGTMGVALSVCTLPG-QVTSDRLGPGKMELGLGIHGEPGAAVA 158 (512)
Q Consensus 80 RRG~aG~v~v~Ki~GA~A~~G~~l~~v~~~~~~~~~~~~t~gval~~c~~P~-~~~~~~l~~~e~E~G~GiHgEpG~~~~ 158 (512)
|||+||+||||||+||+||+|+||+||+++++++++|++||||+|+|||+|+ ++|+|+|++||||||||||||||++|.
T Consensus 132 RRGlAG~v~v~KiaGAaAe~G~~L~ev~~~~~~~~~~~~Tigval~~c~~Pg~~~~~f~L~~~emE~GmGIHGEpG~~r~ 211 (325)
T PF02733_consen 132 RRGLAGTVLVHKIAGAAAERGASLDEVKELAEKANDNLRTIGVALSPCTVPGRGKPSFELPEDEMEIGMGIHGEPGVERI 211 (325)
T ss_dssp S---TTHHHHHHHHHHHHHTT--HHHHHHHHHHHHTTEEEEEEEEE--EETTTCSSSS-B-TTEEEETE-TTS---SEEE
T ss_pred cccccchhHHHHHHHHHHHhCCCHHHHHHHHHHHHHhhceeeeeccCcCCCCCCCCcccCCCCCEEeccccCCCCCcccc
Confidence 9999999999999999999999999999999999999999999999999999 789999999999999999999999999
Q ss_pred cCCC-HHHHHHHHHHHHHhcc---cCCCCCCCCCeEEEEEcCCCCChHHHHHHHHHHHHHhh-hhhcCCeEEEeeecccc
Q 010360 159 DLQP-VDVVVSHVLKQILSTE---TNYVPITRGNRVVLMINGLGATPVMELMIAAGKAVPNL-QLEHGLAVERVYTGSFM 233 (512)
Q Consensus 159 ~~~~-a~~lv~~ml~~ll~~~---~~~~~~~~~~~v~vlvNnlG~ts~~El~~~~~~~~~~L-~~~~gi~v~r~~~G~~~ 233 (512)
++.| +++++++|+++|+++. |+|++++++|+++|||||||+||.||||++++++.++| +++ ||+|+|+|+|+||
T Consensus 212 ~~~~~a~elv~~ml~~ll~~~~~~r~~~~~~~gd~v~llVNnLG~ts~lEl~ii~~~v~~~L~~~~-gi~v~r~~vG~~~ 290 (325)
T PF02733_consen 212 KLKPSADELVDEMLDKLLDDLDPDRAFLPLKEGDEVALLVNNLGGTSQLELYIIAREVLEQLEEEK-GIKVVRVYVGNFM 290 (325)
T ss_dssp E--B-HHHHHHHHHHHHHHCCHCCEEEHTG-TT-EEEEEEEE-BSS-HHHHHHHHHHHHHHH-HHT-TEEEEEEEEE-SS
T ss_pred CCCCcHHHHHHHHHHHHhccCcccccccccCCCCeEEEEecCCCCCcHHHHHHHHHHHHHHHHHhc-CceEEEeEEEccc
Confidence 9999 9999999999999874 67899999999999999999999999999999999999 666 9999999999999
Q ss_pred cccCCCcceEEEeeccHHHHHhhcCcCCCCCCCCC
Q 010360 234 TSLDMAGFSISIMKADEVILKHLDATTKAPHWPVG 268 (512)
Q Consensus 234 TSl~m~GfSiTll~ld~~~~~~ldap~~a~~w~~~ 268 (512)
|||||+|||||||++|+++++|||+||++|+|+|+
T Consensus 291 TSLdm~GfSiTLl~ld~e~~~~~~ap~~~pa~~~g 325 (325)
T PF02733_consen 291 TSLDMAGFSITLLKLDDELKELLDAPTDTPAWRWG 325 (325)
T ss_dssp --TTBEEEEEEEEEETSHHHHHHHS-EESSS-EE-
T ss_pred CCCCCceeEEEeeecCHHHHHHhcCcccCccCCCC
Confidence 99999999999999999999999999999999873
No 11
>COG2376 DAK1 Dihydroxyacetone kinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.3e-75 Score=594.05 Aligned_cols=256 Identities=46% Similarity=0.729 Sum_probs=248.3
Q ss_pred CcceeccCCCCCCCCHHHHHHHHHhccCCCCeEEEeeccccccccHHHHHHHHHhcCCcEEEEEecCcccCCCCCC-CCC
Q 010360 1 MLTAAICGDVFASPPVDSILAGIHAVTGPMGCLLIVTNYTGDRLNFGLAAEQAKSEGYKVEIVIVGDDCALPPPRG-IAG 79 (512)
Q Consensus 1 mL~aav~G~vFaSPs~~~i~~ai~~~~~~~Gvl~iv~NYtGD~lnFg~A~e~a~~~G~~v~~v~v~DDva~~~~~~-~~g 79 (512)
||+|+++|++|+||+++||+++|++++.++|++++++||+||+|||+||+|+++++|++|+.|+|.|||++.++++ .++
T Consensus 67 ml~aa~~g~if~sP~~~~il~ai~~a~~g~ggl~ig~nY~gd~mnf~~A~e~a~~~gi~v~~v~v~ddva~~~~rg~~~~ 146 (323)
T COG2376 67 MLDAALVGEIFTSPSPDQILKAIGAALLGKGGLASGPNYGGDFMNFGMAAEGADAEGIKVLTVVVNDDVAVIQSRGKAEG 146 (323)
T ss_pred HHHHHhcccccCCCCHHHHHHHHHHHhcCCeeEEEecchHHHHHHHHHHHhhhhhcCCceEEEEeecccccccccccccc
Confidence 7999999999999999999999999999999999999999999999999999999999999999999999988754 799
Q ss_pred ccccchhhhHHHHHhHHHHcCCCHHHHHHHHHHHHhhhcccceeccccccCCCCCCCCcCCCeeEEeccccCCCCccccc
Q 010360 80 RRGLAGTILVNKIAGAAAAAGLSLADVAAEAKRASEMVGTMGVALSVCTLPGQVTSDRLGPGKMELGLGIHGEPGAAVAD 159 (512)
Q Consensus 80 RRG~aG~v~v~Ki~GA~A~~G~~l~~v~~~~~~~~~~~~t~gval~~c~~P~~~~~~~l~~~e~E~G~GiHgEpG~~~~~ 159 (512)
|||++|+||||||+||+|++|+||+++.+++++++++++|+||+|++|++|+... |++++||||+|+|||||||++|++
T Consensus 147 rrgtagdvlv~ki~gaaa~~g~~l~~~~~~a~~a~~~~~s~Gv~lt~~~vp~~Gr-f~~~~gE~elG~gihGe~g~~~~~ 225 (323)
T COG2376 147 RRGTAGDVLVPKIAGAAAERGLSLDEVKAVALKAIDNAASIGVALTPCTVPTKGR-ASLGLGERSLGHGIHGEPGVRREI 225 (323)
T ss_pred CCceeeeehHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHHHhcCcccccccCc-cccCCCCEeeccccCCCCcchHHh
Confidence 9999999999999999999999999999999999999999999999999999433 999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEcCCCCChHHHHHHHHHHHHHhhhhhcCCeEEEeeecccccccCCC
Q 010360 160 LQPVDVVVSHVLKQILSTETNYVPITRGNRVVLMINGLGATPVMELMIAAGKAVPNLQLEHGLAVERVYTGSFMTSLDMA 239 (512)
Q Consensus 160 ~~~a~~lv~~ml~~ll~~~~~~~~~~~~~~v~vlvNnlG~ts~~El~~~~~~~~~~L~~~~gi~v~r~~~G~~~TSl~m~ 239 (512)
++++++++++|+++|+++ ++++ |+|+|||||||+||++|||++++.|.++|+++ ||+|+|+++|+|||||||+
T Consensus 226 l~s~~e~~~el~~~l~~~-----~~~~-~~v~~lvn~lG~tp~~el~~~~~~v~~~l~~~-~i~i~~~~~G~~~Tsl~m~ 298 (323)
T COG2376 226 LKSADELAKELVDKLLAE-----KLEQ-DEVAVLVNGLGATPLMELYILYNRVARLLAAK-GITIERTLVGNYMTSLDMA 298 (323)
T ss_pred HHhHHHHHHHHHHHHhcc-----cCCC-CcEEEEecCCCCCcHHHHHHHHHHHHHHHHHC-CCEEEEeeecceecccccC
Confidence 999999999999999986 5677 99999999999999999999999999999999 9999999999999999999
Q ss_pred cceEEEeeccHHHHHhhcCcCCCCCC
Q 010360 240 GFSISIMKADEVILKHLDATTKAPHW 265 (512)
Q Consensus 240 GfSiTll~ld~~~~~~ldap~~a~~w 265 (512)
||||||+++|+||++|||+||++ .|
T Consensus 299 G~sitl~~~d~~~~~~~~~p~~~-~~ 323 (323)
T COG2376 299 GFSITLLKLDDELLDLLDAPVDT-RW 323 (323)
T ss_pred CceEEEEeCCHHHHHHhcCcCCC-CC
Confidence 99999999999999999999999 65
No 12
>PRK10005 dihydroxyacetone kinase subunit DhaL; Provisional
Probab=100.00 E-value=9e-52 Score=401.78 Aligned_cols=200 Identities=26% Similarity=0.361 Sum_probs=187.7
Q ss_pred cHHHHHHHHHHHHHHHHHhHHHhhhccCCCCCCchhHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHhcCCchhh
Q 010360 303 QGHVLEVTIEAAAEAVVNLRDRLNEWDSKVGDGDCGSTMYRGATAILEDKKKYYPLNDAAETVNEIGASIRRVMGGTSGI 382 (512)
Q Consensus 303 ~~~~~~~~l~~~~~~li~~e~~Ln~LD~~vGDGD~G~tm~~g~~ai~~~l~~~~~~~~~~~~l~~i~~a~~~~~GGtSG~ 382 (512)
+...+++||.++++.|++++++||+||+++||||||+||.+||+++.+.++ .++..++.++|..+++++++.|||||||
T Consensus 4 ~~~~~~~~l~~~~~~l~~~~~~Lt~lD~~iGDGD~G~~m~~G~~av~~~l~-~~~~~d~~~~l~~~g~~~~~~~GGtsG~ 82 (210)
T PRK10005 4 SRTQIVNWLTRCGDIFTEESDYLTGLDREIGDADHGLNMNRGFSKVVEKLP-AIADKDIGFILKNTGMTLLSSVGGASGP 82 (210)
T ss_pred CHHHHHHHHHHHHHHHHHhHHHHHHHhccccCccHHHHHHHHHHHHHHHhh-ccccCCHHHHHHHHHHHHHHHcCCccHH
Confidence 456789999999999999999999999999999999999999999999998 3666799999999999999999999999
Q ss_pred HHHHHHHHHHHHhhccCCCCCCHHH------HHHHHHHHhhCCCCCCcchhhcHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 010360 383 LYHIFCKAAYAKLKASSKSGITSKQ------SSIAAVSKYGGATAGYRTMLDALIPAAAVLQERLSAGIDPSTAFILSSE 456 (512)
Q Consensus 383 Ly~~~f~~~a~~l~~~~~~~~~~~~------~al~~i~~~g~A~~GDkTMlDaL~Pa~~al~~~~~~g~~~~~~l~~A~~ 456 (512)
||++||+++++.++++ ++++..+ .++++|++||+|+||||||||+|+|++++|++..+++.++.++|+++++
T Consensus 83 Lyg~~f~~~~~~l~~~--~~~~~~~~~~al~~~~~~i~~~G~A~~GdkTmlDaL~Pa~~al~~~~~~~~~~~~~l~~a~~ 160 (210)
T PRK10005 83 LYGTFFIRAAQATQAR--QSLTLEELYQMFRDGADGVISRGKAEPGDKTMCDVWVPVVESLRQSSEQNLSVPAALNAAVS 160 (210)
T ss_pred HHHHHHHHHHHHhccC--CCCCHHHHHHHHHHHHHHHHHHcCCCCCCchhHhhHHHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 9999999999999976 5666555 8899999999999999999999999999999988888999999999999
Q ss_pred HHHHHHHhCccchhhhccccccCCccCCCCCCchHHHHHHHHHHHHHHHH
Q 010360 457 AAIAGAESTKHMQAQAGRSTYISPEILASVPDPGAMAAAAWYRAAALAVK 506 (512)
Q Consensus 457 aA~~gae~T~~m~A~~GRAsY~gers~g~vpDPGA~av~~il~al~~~~~ 506 (512)
+|++|+++|++|.|++|||+|+|||++|+ |||||+++++||+++++.++
T Consensus 161 aA~~gae~T~~m~A~~GRAsy~gers~G~-~DPGA~s~~~i~~al~~~~~ 209 (210)
T PRK10005 161 IAESAAQSTITMQARKGRASYLGERSIGH-QDPGATSVMFMMQALALAAK 209 (210)
T ss_pred HHHHHHHHHhhcccccCchhhhccccCCC-CCcCHHHHHHHHHHHHHHHc
Confidence 99999999999999999999999999966 59999999999999988764
No 13
>TIGR02365 dha_L_ycgS dihydroxyacetone kinase, phosphoprotein-dependent, L subunit. Two types of dihydroxyacetone kinase (glycerone kinase) are described. In yeast and a few bacteria, e.g. Citrobacter freundii, the enzyme is a single chain that uses ATP as phosphoryl donor and is designated EC 2.7.1.29. By contract, E. coli and many other bacterial species have a multisubunit form (EC 2.7.1.-) with a phosphoprotein donor related to PTS transport proteins. This family represents the subunit homologous to the E. coli YcgS subunit.
Probab=100.00 E-value=1.2e-48 Score=375.94 Aligned_cols=187 Identities=28% Similarity=0.451 Sum_probs=175.1
Q ss_pred HHHHHHHHHHHHHHhHHHhhhccCCCCCCchhHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHhcCCchhhHHHH
Q 010360 307 LEVTIEAAAEAVVNLRDRLNEWDSKVGDGDCGSTMYRGATAILEDKKKYYPLNDAAETVNEIGASIRRVMGGTSGILYHI 386 (512)
Q Consensus 307 ~~~~l~~~~~~li~~e~~Ln~LD~~vGDGD~G~tm~~g~~ai~~~l~~~~~~~~~~~~l~~i~~a~~~~~GGtSG~Ly~~ 386 (512)
+++||..+++.|++++++||+||++|||||||+||.+|++++.+.+++ .+..++.++|..++++++..+|||||||||+
T Consensus 1 ~~~~~~~~~~~l~~~~~~L~~LD~~vGDGD~G~nm~~g~~ai~~~l~~-~~~~~~~~~l~~~~~~~~~~~gGtSG~l~~~ 79 (194)
T TIGR02365 1 ILNWLKNCGDLIIENKEYLTELDRAIGDGDHGINMARGFSEVKEKLDA-FKDKTIGEILKNTGMTLISKVGGASGPLYGT 79 (194)
T ss_pred CHHHHHHHHHHHHHhHHHHHHhcCCCCCCchHHHHHHHHHHHHHHHhh-cCCCCHHHHHHHHHHHHHHHcCCchHHHHHH
Confidence 368999999999999999999999999999999999999999999973 5567999999999999999999999999999
Q ss_pred HHHHHHHHhhccCCCCCCHHH------HHHHHHHHhhCCCCCCcchhhcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 010360 387 FCKAAYAKLKASSKSGITSKQ------SSIAAVSKYGGATAGYRTMLDALIPAAAVLQERLSAGIDPSTAFILSSEAAIA 460 (512)
Q Consensus 387 ~f~~~a~~l~~~~~~~~~~~~------~al~~i~~~g~A~~GDkTMlDaL~Pa~~al~~~~~~g~~~~~~l~~A~~aA~~ 460 (512)
||+++++.++++ ++++..+ .+++.+++||+++||||||||+|+|+++++++.. ++.++|++++++|++
T Consensus 80 ~f~~~~~~l~~~--~~~~~~~~~~al~~a~~~i~~~g~a~~GdkTmlD~l~pa~~al~~~~----~~~~~l~~a~~aA~~ 153 (194)
T TIGR02365 80 AFLKASKALKDD--EILDAEDLAEILQAGLEGIQSRGKATPGEKTMVDVWAPVVEALRKAA----DEPDALAAAREAAEQ 153 (194)
T ss_pred HHHHHHHHhccC--CCCCHHHHHHHHHHHHHHHHHHcCCCCCCcchhhhHHHHHHHHHHcC----CHHHHHHHHHHHHHH
Confidence 999999999876 5676555 8889999999999999999999999999998753 889999999999999
Q ss_pred HHHhCccchhhhccccccCCccCCCCCCchHHHHHHHHHHH
Q 010360 461 GAESTKHMQAQAGRSTYISPEILASVPDPGAMAAAAWYRAA 501 (512)
Q Consensus 461 gae~T~~m~A~~GRAsY~gers~g~vpDPGA~av~~il~al 501 (512)
++++|++|+|++|||+|+|||++|+ |||||+++++||++|
T Consensus 154 g~e~T~~m~a~~GRA~y~ge~s~G~-~DpGA~~~~~~l~al 193 (194)
T TIGR02365 154 GAEATKDMQATKGRASYLGERSIGH-IDPGATSSYYLFQAL 193 (194)
T ss_pred HHHhcccchhccCccccccccccCC-CCccHHHHHHHHHHh
Confidence 9999999999999999999999965 599999999999987
No 14
>PF02734 Dak2: DAK2 domain; InterPro: IPR004007 Dihydroxyacetone kinase (glycerone kinase) 2.7.1.29 from EC catalyses the phosphorylation of glycerone in the presence of ATP to glycerone phosphate in the glycerol utilization pathway. This is the predicted phosphatase domain of the dihydroxyacetone kinase family.; GO: 0004371 glycerone kinase activity, 0006071 glycerol metabolic process; PDB: 3CR3_B 1UN8_A 1UN9_B 3PNL_B 2BTD_A.
Probab=100.00 E-value=1.6e-43 Score=335.40 Aligned_cols=169 Identities=39% Similarity=0.553 Sum_probs=146.7
Q ss_pred CCCCCchhHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhhccCCCCCCHHH---
Q 010360 331 KVGDGDCGSTMYRGATAILEDKKKYYPLNDAAETVNEIGASIRRVMGGTSGILYHIFCKAAYAKLKASSKSGITSKQ--- 407 (512)
Q Consensus 331 ~vGDGD~G~tm~~g~~ai~~~l~~~~~~~~~~~~l~~i~~a~~~~~GGtSG~Ly~~~f~~~a~~l~~~~~~~~~~~~--- 407 (512)
+|||||||+||++++++|++.+++..+..++.++|..+++++++.+|||||+||++||+++++.++++ ++++..+
T Consensus 1 ~vGDGD~G~nm~~~~~ai~~~l~~~~~~~~~~~~l~~~~~~~~~~~gGssG~L~~~~f~~~a~~l~~~--~~~~~~~~~~ 78 (175)
T PF02734_consen 1 PVGDGDHGTNMARGARAIKEALDDLPPEDDPGKLLKAIAMALLSGAGGSSGPLYSQFFMGAAKALKGK--EELDAEDLAE 78 (175)
T ss_dssp CTSSS-HHHHHHHHHHHHHHHHHCCSCTSSHHHHHHHHHHHHHHHT-CTHHHHHHHHHHHHHHHCHTT--SECCHHHHHH
T ss_pred CCCchhHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHhccC--CCCCHHHHHH
Confidence 69999999999999999999998422678999999999999999999999999999999999999886 6677666
Q ss_pred ---HHHHHHHHhhCCCCCCcchhhcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccchhhhccccccCCccCC
Q 010360 408 ---SSIAAVSKYGGATAGYRTMLDALIPAAAVLQERLSAGIDPSTAFILSSEAAIAGAESTKHMQAQAGRSTYISPEILA 484 (512)
Q Consensus 408 ---~al~~i~~~g~A~~GDkTMlDaL~Pa~~al~~~~~~g~~~~~~l~~A~~aA~~gae~T~~m~A~~GRAsY~gers~g 484 (512)
++++++++||+++||||||||+|+|++++|++..+ +.++.++|+.++++|++++++|++|++++|||+|++||++|
T Consensus 79 a~~~~~~~i~~~g~a~~GdkTmlD~L~pa~~al~~~~~-~~~~~~~l~~a~~aA~~g~e~T~~~~a~~GRAsy~~e~s~g 157 (175)
T PF02734_consen 79 AFEAALEAIQARGGAKPGDKTMLDALIPAAEALEEAKD-GKSLAEALEAAAEAAEEGAEATKDMLAKLGRASYLGERSIG 157 (175)
T ss_dssp HHHHHHHHHHHHH---TTSSSTHHHHHHHHHHHHCCCC-T--HHHHHHHHHHHHHHHHHHHCCS---SSGGGGGGGGGTT
T ss_pred HHHHHHHHHHHHcCCCCCcchHHHHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHHHHHHHHHhccccchhhhhccccCC
Confidence 88899999999999999999999999999998665 88999999999999999999999999999999999999996
Q ss_pred CCCCchHHHHHHHHHHHHH
Q 010360 485 SVPDPGAMAAAAWYRAAAL 503 (512)
Q Consensus 485 ~vpDPGA~av~~il~al~~ 503 (512)
+ |||||+++++||++|++
T Consensus 158 ~-~DpGA~~~~~~~~~l~~ 175 (175)
T PF02734_consen 158 V-VDPGAVAVALILEALAE 175 (175)
T ss_dssp S---HHHHHHHHHHHHHHT
T ss_pred C-CCccHHHHHHHHHHhhC
Confidence 5 59999999999999974
No 15
>TIGR03599 YloV DAK2 domain fusion protein YloV. This model describes a protein family that contains an N-terminal DAK2 domain (pfam02734), so named because of similarity to the dihydroxyacetone kinase family family. The GTP-binding protein CgtA (a member of the obg family) is a bacterial GTPase associated with ribosome biogenesis, and it has a characteristic extension (TIGR03595) in certain lineages. This protein family described here was found, by the method of partial phylognetic profiling, to have a phylogenetic distribution strongly correlated to that of TIGR03595. This correlation implies some form of functional coupling.
Probab=100.00 E-value=5.3e-35 Score=317.87 Aligned_cols=189 Identities=17% Similarity=0.181 Sum_probs=171.9
Q ss_pred HHHHHHHHHHHHHHhHHHhhhccC-CCCCCchhHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHhcCCchhhHHH
Q 010360 307 LEVTIEAAAEAVVNLRDRLNEWDS-KVGDGDCGSTMYRGATAILEDKKKYYPLNDAAETVNEIGASIRRVMGGTSGILYH 385 (512)
Q Consensus 307 ~~~~l~~~~~~li~~e~~Ln~LD~-~vGDGD~G~tm~~g~~ai~~~l~~~~~~~~~~~~l~~i~~a~~~~~GGtSG~Ly~ 385 (512)
|++|+..+++.|++++++||+||+ +|||||||+||.+|++++.+.++ ..+..++.+++..++++++..+|||||+|||
T Consensus 1 ~~~~l~~~a~~l~~~~~~Ln~LdvfpVgDGDtGtNM~~t~~a~~~~l~-~~~~~~~~~~~~~~a~~~l~garGnSGvIls 79 (530)
T TIGR03599 1 LADMIRSGANNLENNAEEINALNVFPVPDGDTGTNMLLTMTSAVKEIE-KLEEGSVGEVAKALAKGLLMGARGNSGVILS 79 (530)
T ss_pred CHHHHHHHHHHHHHhHHHHHHhcCCccCCcChHHHHHHHHHHHHHHHh-hcCCCCHHHHHHHHHHHHHhcCCCcHHHHHH
Confidence 478999999999999999999999 89999999999999999999998 3566789999999999999999999999999
Q ss_pred HHHHHHHHHhhccCCCCCCHHH------HHHHHHHHhhCCCCCCcchhhcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 010360 386 IFCKAAYAKLKASSKSGITSKQ------SSIAAVSKYGGATAGYRTMLDALIPAAAVLQERLSAGIDPSTAFILSSEAAI 459 (512)
Q Consensus 386 ~~f~~~a~~l~~~~~~~~~~~~------~al~~i~~~g~A~~GDkTMlDaL~Pa~~al~~~~~~g~~~~~~l~~A~~aA~ 459 (512)
+||+++++.++++ ++++..+ .|.+.++++ ..+||||||||+|+|+++++++..+++.++.++|++++++|+
T Consensus 80 q~f~g~a~~l~~~--~~~~~~~l~~al~~a~~~a~~a-v~~pgegTmLdvl~~aaea~~~~~~~~~~~~e~l~~a~~aA~ 156 (530)
T TIGR03599 80 QIFRGFAKALEDK--EELDAEDLAAAFQEAVETAYKA-VMKPVEGTILTVLREAAEAAEKAAEEGDDLEEVMEAAVEAAE 156 (530)
T ss_pred HHHHHHHHHhccC--CCCCHHHHHHHHHHHHHHHHHh-CCCCCCCCHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHH
Confidence 9999999999876 6676555 777888854 556999999999999999999887788899999999999999
Q ss_pred HHHHhCccchhhhccccccCCccCCCCCCchHHHHHHHHHHHHHHHHHH
Q 010360 460 AGAESTKHMQAQAGRSTYISPEILASVPDPGAMAAAAWYRAAALAVKDM 508 (512)
Q Consensus 460 ~gae~T~~m~A~~GRAsY~gers~g~vpDPGA~av~~il~al~~~~~~~ 508 (512)
+++++|++|+|+++. .|+ +||||+++++||++|.+.+++.
T Consensus 157 ~al~~T~~mla~lk~--------~Gv-vD~Ga~gl~~ile~l~~~l~g~ 196 (530)
T TIGR03599 157 KALARTPELLPVLKE--------AGV-VDSGGQGLVVILEGMLAALTGE 196 (530)
T ss_pred HHHHhChhhhhhhcc--------CCC-CCCcHHHHHHHHHHHHHHhcCC
Confidence 999999999999953 355 5999999999999999998764
No 16
>COG1461 Predicted kinase related to dihydroxyacetone kinase [General function prediction only]
Probab=99.93 E-value=5e-26 Score=243.38 Aligned_cols=196 Identities=18% Similarity=0.165 Sum_probs=175.5
Q ss_pred ccHHHHHHHHHHHHHHHHHhHHHhhhccC-CCCCCchhHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHhcCCch
Q 010360 302 QQGHVLEVTIEAAAEAVVNLRDRLNEWDS-KVGDGDCGSTMYRGATAILEDKKKYYPLNDAAETVNEIGASIRRVMGGTS 380 (512)
Q Consensus 302 ~~~~~~~~~l~~~~~~li~~e~~Ln~LD~-~vGDGD~G~tm~~g~~ai~~~l~~~~~~~~~~~~l~~i~~a~~~~~GGtS 380 (512)
.+...|.+|+.++|++|.++.+|+|.||. ||+|||+|+||...++.+.+.+++ .+..+++++.+.++..++..++|+|
T Consensus 5 i~~~~~~~m~~~ga~~l~~~~~~vN~LNVFPVPDGDTGTNM~~Tm~~~~~~~~~-~~~~~~~~l~~~~s~g~LmGARGNS 83 (542)
T COG1461 5 IDGSLFAEMIIAGANNLSKNADEVNALNVFPVPDGDTGTNMSMTMTSAIKELEN-LKSSSIGELAKILSKGLLMGARGNS 83 (542)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHhhhcCcccCCCCCCcccHHHHHHHHHHHHHh-cCCCcHHHHHHHHHHHHhhhccCcc
Confidence 46788999999999999999999999999 999999999999999999999984 5668999999999999999999999
Q ss_pred hhHHHHHHHHHHHHhhccCCCCCCHHH--HHHH-HH--HHhhCCCCCCcchhhcHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 010360 381 GILYHIFCKAAYAKLKASSKSGITSKQ--SSIA-AV--SKYGGATAGYRTMLDALIPAAAVLQERLSAGIDPSTAFILSS 455 (512)
Q Consensus 381 G~Ly~~~f~~~a~~l~~~~~~~~~~~~--~al~-~i--~~~g~A~~GDkTMlDaL~Pa~~al~~~~~~g~~~~~~l~~A~ 455 (512)
|+|+|++|++++....++ .+++..+ .|+. ++ .+....+|.++|||.+++-+++++....++.+++.+++.+|+
T Consensus 84 GVIlSQilrGf~~~~~~~--~ei~~~~la~Af~~ave~AYkAVmkPVEGTILTV~R~~ae~~~~~~~~~~~~~~~~~~a~ 161 (542)
T COG1461 84 GVILSQILRGFAAAIADK--EEIDIEDLAKAFQRAVEVAYKAVMKPVEGTILTVIRSAAEAAKKKAKNHDDFEKLMEAAV 161 (542)
T ss_pred hhhHHHHHHHHHHhcccc--cccCHHHHHHHHHHHHHHHHHHhcCCcCceEEEehHHHHHHHHhhhccchhHHHHHHHHH
Confidence 999999999999999877 7888777 3332 21 122346899999999999999999987778899999999999
Q ss_pred HHHHHHHHhCccchhhhccccccCCccCCCCCCchHHHHHHHHHHHHHHHHHHh
Q 010360 456 EAAIAGAESTKHMQAQAGRSTYISPEILASVPDPGAMAAAAWYRAAALAVKDMY 509 (512)
Q Consensus 456 ~aA~~gae~T~~m~A~~GRAsY~gers~g~vpDPGA~av~~il~al~~~~~~~~ 509 (512)
++|+++.+.|++|+|.+..+ |.| |+|+.++++|+++|.+++++..
T Consensus 162 ~~A~~aL~kTP~~LpvLKea--------GVV-DSGg~Gl~~ileG~~~a~~g~~ 206 (542)
T COG1461 162 KAAEKALEKTPEMLPVLKEA--------GVV-DSGGKGLVYILEGFLSALTGEP 206 (542)
T ss_pred HHHHHHHHhCHHHHHHHHHc--------Cee-cCCCceEEehHHHHHHHhcCCC
Confidence 99999999999999999665 666 9999999999999999997654
No 17
>COG2376 DAK1 Dihydroxyacetone kinase [Carbohydrate transport and metabolism]
Probab=99.85 E-value=1.7e-21 Score=198.87 Aligned_cols=196 Identities=18% Similarity=0.142 Sum_probs=165.5
Q ss_pred HHHHHHHHHHhHHHhhh--ccCCCCCCchhHHHH--HHHHHHHHHhhh-cCCCCCHHHHHHHHHHHHHHhcCCchhhHHH
Q 010360 311 IEAAAEAVVNLRDRLNE--WDSKVGDGDCGSTMY--RGATAILEDKKK-YYPLNDAAETVNEIGASIRRVMGGTSGILYH 385 (512)
Q Consensus 311 l~~~~~~li~~e~~Ln~--LD~~vGDGD~G~tm~--~g~~ai~~~l~~-~~~~~~~~~~l~~i~~a~~~~~GGtSG~Ly~ 385 (512)
+..+....+.+++++++ +|..+||||||.||+ +|+..+.+++.. ...+.++.++|..++++.....|+.||++|+
T Consensus 27 ~~~i~~~~~~~r~~l~~kV~dvsgGgsgHep~~ag~vG~gml~aa~~g~if~sP~~~~il~ai~~a~~g~ggl~ig~nY~ 106 (323)
T COG2376 27 LDLIEENGIANREYLSEKVLDVSGGGSGHEPNMAGYVGFGMLDAALVGEIFTSPSPDQILKAIGAALLGKGGLASGPNYG 106 (323)
T ss_pred HHhcccchhhhcccCcccceeeeecCCccchhhhccccHHHHHHHhcccccCCCCHHHHHHHHHHHhcCCeeEEEecchH
Confidence 33333344589999999 999999999999999 999999999874 2334569999999999999999999999999
Q ss_pred HHHHHHHHHhhccCCCCCCHHH----HHHHHHHHhhCCCCCCcchhhcHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHH
Q 010360 386 IFCKAAYAKLKASSKSGITSKQ----SSIAAVSKYGGATAGYRTMLDALIPAAAVLQERLSA--GIDPSTAFILSSEAAI 459 (512)
Q Consensus 386 ~~f~~~a~~l~~~~~~~~~~~~----~al~~i~~~g~A~~GDkTMlDaL~Pa~~al~~~~~~--g~~~~~~l~~A~~aA~ 459 (512)
..|+.++.+.+......+.... ..++.++++|+++.|+|||.|+|+|.++.+...... +.....+++...+++.
T Consensus 107 gd~mnf~~A~e~a~~~gi~v~~v~v~ddva~~~~rg~~~~rrgtagdvlv~ki~gaaa~~g~~l~~~~~~a~~a~~~~~s 186 (323)
T COG2376 107 GDFMNFGMAAEGADAEGIKVLTVVVNDDVAVIQSRGKAEGRRGTAGDVLVPKIAGAAAERGLSLDEVKAVALKAIDNAAS 186 (323)
T ss_pred HHHHHHHHHHhhhhhcCCceEEEEeeccccccccccccccCCceeeeehHHHHHHHHHhccCchhhHHHHHHHHHHHHHH
Confidence 9999999998764111222222 888999999999999999999999999998865322 3455567788889999
Q ss_pred HHHHhCccchhhhccccc-cCCccCCCCCCchHHHHHH-HHHHHHHHHHH
Q 010360 460 AGAESTKHMQAQAGRSTY-ISPEILASVPDPGAMAAAA-WYRAAALAVKD 507 (512)
Q Consensus 460 ~gae~T~~m~A~~GRAsY-~gers~g~vpDPGA~av~~-il~al~~~~~~ 507 (512)
.|++.|+.+.|..||++| .||+++|+. |||+.++.+ +|+.+.+.+.+
T Consensus 187 ~Gv~lt~~~vp~~Grf~~~~gE~elG~g-ihGe~g~~~~~l~s~~e~~~e 235 (323)
T COG2376 187 IGVALTPCTVPTKGRASLGLGERSLGHG-IHGEPGVRREILKSADELAKE 235 (323)
T ss_pred HHHhcCcccccccCccccCCCCEeeccc-cCCCCcchHHhHHhHHHHHHH
Confidence 999999999999999999 999999887 999999999 99998887765
No 18
>TIGR03599 YloV DAK2 domain fusion protein YloV. This model describes a protein family that contains an N-terminal DAK2 domain (pfam02734), so named because of similarity to the dihydroxyacetone kinase family family. The GTP-binding protein CgtA (a member of the obg family) is a bacterial GTPase associated with ribosome biogenesis, and it has a characteristic extension (TIGR03595) in certain lineages. This protein family described here was found, by the method of partial phylognetic profiling, to have a phylogenetic distribution strongly correlated to that of TIGR03595. This correlation implies some form of functional coupling.
Probab=86.61 E-value=33 Score=38.56 Aligned_cols=179 Identities=23% Similarity=0.242 Sum_probs=115.2
Q ss_pred eeccCCCCCCCCHHHHHHHHHhccCCCCeEEEeeccccccccHHHHHHHHHhc-CCcEEEEEecCcccCCCCCCCCCccc
Q 010360 4 AAICGDVFASPPVDSILAGIHAVTGPMGCLLIVTNYTGDRLNFGLAAEQAKSE-GYKVEIVIVGDDCALPPPRGIAGRRG 82 (512)
Q Consensus 4 aav~G~vFaSPs~~~i~~ai~~~~~~~Gvl~iv~NYtGD~lnFg~A~e~a~~~-G~~v~~v~v~DDva~~~~~~~~gRRG 82 (512)
..++|.==.-||+.+|++||+.++... |+++-+|. |.=||+|+|... +.+|.+|. .+ .=-.|
T Consensus 337 ~vi~ggqt~nPS~~dll~ai~~~~a~~-V~iLPNn~-----nii~aA~qa~~~~~~~v~vvp---------T~--s~~qg 399 (530)
T TIGR03599 337 VVIEGGQTMNPSTEDILKAIEKVNAKN-VFVLPNNK-----NIILAAEQAAELADKNVVVIP---------TK--TIVQG 399 (530)
T ss_pred EEEeCCCCCCCCHHHHHHHHHhCCCCe-EEEecCCc-----cHHHHHHHHHHHhCCcEEEEe---------CC--CHHHH
Confidence 455665434799999999999987765 77777773 888999998764 44444432 22 11233
Q ss_pred cchhhhHHHHHhHHHHcCCCHHHHHHHHHHHHhhhccccee--ccccccCCCCCCCCcCCCeeEEeccccCCCCcccccC
Q 010360 83 LAGTILVNKIAGAAAAAGLSLADVAAEAKRASEMVGTMGVA--LSVCTLPGQVTSDRLGPGKMELGLGIHGEPGAAVADL 160 (512)
Q Consensus 83 ~aG~v~v~Ki~GA~A~~G~~l~~v~~~~~~~~~~~~t~gva--l~~c~~P~~~~~~~l~~~e~E~G~GiHgEpG~~~~~~ 160 (512)
++.. +.=+...++++-.+.-..+..+++|.-|. -..-++.+ ..+.+|++ |||-+..=+.. =
T Consensus 400 iaAl--------~~fdp~~~~~~n~~~M~ea~~~v~~g~vt~A~rd~~~~~----~~i~~gd~---igi~~~~i~~~--~ 462 (530)
T TIGR03599 400 LAAL--------LVFDPEASLEDNKEAMEEAIKAVRSGEVTYAVRDTKING----LEIKKGDF---LGIVDGKIIAV--G 462 (530)
T ss_pred HHHH--------HhhCCCCCHHHHHHHHHHHHhcCeEEEEEEEeccceecC----eeecCCCE---eEecCCeEEEe--c
Confidence 3321 12267899999999999999999887663 22222332 22333333 44433221111 2
Q ss_pred CCHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEcCCCCChHHHHHHHHHHHHHhhhhhc-CCeEEEeeec
Q 010360 161 QPVDVVVSHVLKQILSTETNYVPITRGNRVVLMINGLGATPVMELMIAAGKAVPNLQLEH-GLAVERVYTG 230 (512)
Q Consensus 161 ~~a~~lv~~ml~~ll~~~~~~~~~~~~~~v~vlvNnlG~ts~~El~~~~~~~~~~L~~~~-gi~v~r~~~G 230 (512)
++..+.+.++++++++ ++.+++-++-|=+.+.. ..+.+.++++++| ++.+.-.+-|
T Consensus 463 ~d~~~~~~~ll~~l~~---------~~~elvTi~~G~~~~~~-----~~~~l~~~i~~~~~~veve~~~Gg 519 (530)
T TIGR03599 463 KDPEDAAKKLLDKLLD---------EDSELITIFYGEDATEE-----EAEELEAFIEEKYPDVEVEIYEGG 519 (530)
T ss_pred CCHHHHHHHHHHHHhc---------CCCeEEEEEECCCCCHH-----HHHHHHHHHHhhCCCcEEEEEECC
Confidence 3678888999999865 36788888888777665 4567777788877 7887755544
No 19
>PRK11377 dihydroxyacetone kinase subunit M; Provisional
Probab=81.66 E-value=22 Score=39.43 Aligned_cols=176 Identities=16% Similarity=0.164 Sum_probs=99.6
Q ss_pred CHHHHHHHHHhccCCCCeEEEeeccccccccHHHHHHHHHhcCCcEEEEEecCcccCCCCCCCCCccccchhhhHHHHHh
Q 010360 15 PVDSILAGIHAVTGPMGCLLIVTNYTGDRLNFGLAAEQAKSEGYKVEIVIVGDDCALPPPRGIAGRRGLAGTILVNKIAG 94 (512)
Q Consensus 15 s~~~i~~ai~~~~~~~Gvl~iv~NYtGD~lnFg~A~e~a~~~G~~v~~v~v~DDva~~~~~~~~gRRG~aG~v~v~Ki~G 94 (512)
++..|.+||+.++++.|||+++= ---=+||-.||.|+...+ .+-++.++ | . | .+ =|++ .+-
T Consensus 48 ~~~~i~~ai~~~~~~~gv~v~~D-lGSa~~~~e~a~e~~~~~-~~~~v~~~-~-a--p----lV-----Eg~~----~aa 108 (473)
T PRK11377 48 DAVKVMEAIESVADADHVLVMMD-MGSALLSAETALELLDPE-IAAKVRLC-A-A--P----LV-----EGTL----AAT 108 (473)
T ss_pred CHHHHHHHHHhccCCCCEEEEEe-cchHHhHHHHHHHhhccc-ccceEEEe-c-C--c----hH-----hHHH----HHH
Confidence 56899999999999999988875 445689999999998533 22233222 2 1 1 11 1222 234
Q ss_pred HHHHcCCCHHHHHHHHHHHHhhhc-ccceeccccccCC-CCCCCCcCCCeeEEeccccCCCCcccccCCCHHHHHHHHHH
Q 010360 95 AAAAAGLSLADVAAEAKRASEMVG-TMGVALSVCTLPG-QVTSDRLGPGKMELGLGIHGEPGAAVADLQPVDVVVSHVLK 172 (512)
Q Consensus 95 A~A~~G~~l~~v~~~~~~~~~~~~-t~gval~~c~~P~-~~~~~~l~~~e~E~G~GiHgEpG~~~~~~~~a~~lv~~ml~ 172 (512)
.+|..|.+|++|.+.++.+...-. .+|... ..|. ..+.-..+.+..+.=+-|.++-|..-+| +..+++..-+
T Consensus 109 v~a~~g~~l~~v~~~~~~a~~~k~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~v~n~~GLHARP---Aa~lv~~a~~ 182 (473)
T PRK11377 109 VSAASGADIDKVIFDAMHALEAKREQLGLPS---SDTEISDTCPAYDEEARSLSVVIKNRNGLHVRP---ASRLVYTLST 182 (473)
T ss_pred HHhccCCCHHHHHHHHHHHhHHHHHhcCCCC---CCcccCCCCCcccccceEEEEEEcCCCCCcHhH---HHHHHHHHhh
Confidence 567899999999999998765333 333322 1111 1111122446666666677777765333 2333333222
Q ss_pred HH----Hh-cc-----cC-----CCCCCCCCeEEEEEcCCCCChHHHHHHHHHHHHHhhhhhcC
Q 010360 173 QI----LS-TE-----TN-----YVPITRGNRVVLMINGLGATPVMELMIAAGKAVPNLQLEHG 221 (512)
Q Consensus 173 ~l----l~-~~-----~~-----~~~~~~~~~v~vlvNnlG~ts~~El~~~~~~~~~~L~~~~g 221 (512)
.= +. .. ++ -+..+.|+++.+.++|= . |.-. ...+.+++++.+|
T Consensus 183 f~s~I~i~~~g~~vdakSi~~lm~Lg~~~Gd~v~i~a~G~----D-e~~A-l~~l~~l~~~~fg 240 (473)
T PRK11377 183 FNADMLLEKNGKCVTPESLNQIALLQVRYNDTLRLIAKGP----E-AEEA-LIAFRQLAEDNFG 240 (473)
T ss_pred CCCeEEEEECCeEEchHhHHHHHhcCCCCCCEEEEEEeCc----C-HHHH-HHHHHHHHHhccC
Confidence 10 00 00 00 14456789999999983 2 2222 2455555555443
No 20
>PRK09314 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional
Probab=73.55 E-value=3.9 Score=43.24 Aligned_cols=55 Identities=18% Similarity=0.253 Sum_probs=44.4
Q ss_pred eeccCCCCCCCCHHHHHHHHHhccCCCCeEEEeecccc----ccccHHHHHHHHHhcCCc
Q 010360 4 AAICGDVFASPPVDSILAGIHAVTGPMGCLLIVTNYTG----DRLNFGLAAEQAKSEGYK 59 (512)
Q Consensus 4 aav~G~vFaSPs~~~i~~ai~~~~~~~Gvl~iv~NYtG----D~lnFg~A~e~a~~~G~~ 59 (512)
.+..||+|+|....|+-.|++.+....|||+..- ..| |-=+||++++..+.-|++
T Consensus 252 ec~tgd~l~~~~~~qL~~Al~~I~~eGGvlvYLr-qegr~an~~RdygigaqIL~dLGi~ 310 (339)
T PRK09314 252 IGSDFELLTSDKFSELLKAIEYLKKNGGVLIFLN-TESKENNQVKDYGIGAQILKYLGIK 310 (339)
T ss_pred cCChHHhhCCCcHHHHHHHHHHHHHcCCEEEEEc-CCCCCcccccchhHHHHHHHHCCCC
Confidence 3567899999988999999999875559987653 323 578999999999999975
No 21
>TIGR02364 dha_pts dihydroxyacetone kinase, phosphotransfer subunit. In E. coli and many other bacteria, unlike the yeasts and a few bacteria such as Citrobacter freundii, the dihydroxyacetone kinase (also called glycerone kinase) transfers a phosphate from a phosphoprotein rather than from ATP and contains multiple subunits. This protein, which resembles proteins of PTS transport systems, is found with its gene adjacent to
Probab=73.44 E-value=17 Score=32.90 Aligned_cols=78 Identities=29% Similarity=0.316 Sum_probs=54.8
Q ss_pred CHHHHHHHHHhccC-CCCeEEEeeccccccccHHHHHHHHHhcCCcEEEEEecCcccCCCCCCCCCccccchhhhHHHH-
Q 010360 15 PVDSILAGIHAVTG-PMGCLLIVTNYTGDRLNFGLAAEQAKSEGYKVEIVIVGDDCALPPPRGIAGRRGLAGTILVNKI- 92 (512)
Q Consensus 15 s~~~i~~ai~~~~~-~~Gvl~iv~NYtGD~lnFg~A~e~a~~~G~~v~~v~v~DDva~~~~~~~~gRRG~aG~v~v~Ki- 92 (512)
++++|.++|+.+++ +.|||+++== -|=+||..+|.++.+.+.. +.|..-| . -||...
T Consensus 44 ~~~~I~~ai~~~~~~~dgVlvl~DL-Ggs~~n~e~a~~~l~~~~~--~~v~g~n-l-----------------Plvega~ 102 (125)
T TIGR02364 44 SPDKIIEAIEKADNEADGVLIFYDL-GSAVMNAEMAVELLEDEDR--DKVHLVD-A-----------------PLVEGAF 102 (125)
T ss_pred hHHHHHHHHHHhcCCCCCEEEEEcC-CCcHhHHHHHHHHhccccc--cEEEEec-h-----------------hHHHHHH
Confidence 57889999999966 8899888765 8899999999999865533 2222211 1 233333
Q ss_pred HhH-HHHcCCCHHHHHHHHHHH
Q 010360 93 AGA-AAAAGLSLADVAAEAKRA 113 (512)
Q Consensus 93 ~GA-~A~~G~~l~~v~~~~~~~ 113 (512)
+.| .+..|.+|++|.+.++..
T Consensus 103 ~aa~~~~~g~~l~~v~~~~~~~ 124 (125)
T TIGR02364 103 AAAVEAQVGASIEQVLAEALQA 124 (125)
T ss_pred HHHHHHcCCCCHHHHHHHHHhc
Confidence 333 446899999999887753
No 22
>PF00925 GTP_cyclohydro2: GTP cyclohydrolase II; InterPro: IPR000926 GTP cyclohydrolase II catalyses the first committed step in the biosynthesis of riboflavin. The enzyme converts GTP and water to formate, 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)- pyrimidine and pyrophosphate, and requires magnesium as a cofactor. It is sometimes found as a bifunctional enzyme with 3,4-dihydroxy-2-butanone 4-phosphate synthase (DHBP_synthase) IPR000422 from INTERPRO. ; GO: 0003935 GTP cyclohydrolase II activity, 0009231 riboflavin biosynthetic process; PDB: 2BZ0_B 2BZ1_A.
Probab=63.20 E-value=5.2 Score=37.94 Aligned_cols=62 Identities=19% Similarity=0.363 Sum_probs=37.7
Q ss_pred eeccCCCCCC---CCHHHHHHHHHhcc-CCCCeEEEeec-------------------------------cccccccHHH
Q 010360 4 AAICGDVFAS---PPVDSILAGIHAVT-GPMGCLLIVTN-------------------------------YTGDRLNFGL 48 (512)
Q Consensus 4 aav~G~vFaS---Ps~~~i~~ai~~~~-~~~Gvl~iv~N-------------------------------YtGD~lnFg~ 48 (512)
.++.||+|-| ....|+-.|++.+. .+.|||+.+.+ +-.|-=+||+
T Consensus 51 ~~~~~Dvf~~~~~d~~~~L~~Am~~I~~~G~GVlVyL~~~~~g~~l~~kl~~~~~~~~g~~~~~a~~~~~~~~d~R~ygi 130 (169)
T PF00925_consen 51 ECLTGDVFGSLRCDCGWQLDKAMRRIAEEGRGVLVYLRQEGRGIGLLNKLRAYNLQDEGYDTVEANRALGFPEDLRDYGI 130 (169)
T ss_dssp --HHHHTS--SSSSHHHHHHHHHHHHHHHTSEEEEEE--TTTTT-HHHHHHHHHHHTTS--HHHHHHCTT--S----THH
T ss_pred cccHhhhcCCCCCCCcHHHHHHHHHHHHcCCEEEEEEcCCCcchhHHHHHHHHHhhhcCCcchhhhhcccCccccccHHH
Confidence 3566999998 56788888998886 57799999831 1256678899
Q ss_pred HHHHHHhcCCcEEEEEec
Q 010360 49 AAEQAKSEGYKVEIVIVG 66 (512)
Q Consensus 49 A~e~a~~~G~~v~~v~v~ 66 (512)
+++..+.-|++ +|.+.+
T Consensus 131 gaqIL~dLGV~-~~rLLt 147 (169)
T PF00925_consen 131 GAQILRDLGVK-KMRLLT 147 (169)
T ss_dssp HHHHHHHTT---SEEEE-
T ss_pred HHHHHHHcCCC-EEEECC
Confidence 99999988876 444443
No 23
>PRK12485 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II-like protein; Provisional
Probab=59.63 E-value=10 Score=40.68 Aligned_cols=56 Identities=14% Similarity=0.157 Sum_probs=38.6
Q ss_pred eeccCCCCCCC----CHHHHHHHHHhccC-CCCeEEEeecccc------------------------ccccHHHHHHHHH
Q 010360 4 AAICGDVFASP----PVDSILAGIHAVTG-PMGCLLIVTNYTG------------------------DRLNFGLAAEQAK 54 (512)
Q Consensus 4 aav~G~vFaSP----s~~~i~~ai~~~~~-~~Gvl~iv~NYtG------------------------D~lnFg~A~e~a~ 54 (512)
.+..||||-|. .-.|...|++.+.. +.|||+.+.|-.| |--+||+|++..|
T Consensus 256 ecltgDv~gS~~c~d~g~qL~~Al~~I~~eG~GvlvYLr~~~~~~gl~~kl~a~~~~~~~~~~~d~r~~r~ygigAqILr 335 (369)
T PRK12485 256 IDPLRDLVGAEYAGPANWTLWAALQKVAEEGHGVVVVLANHESSQALLERIPQLTQPPRQYQRSQSRIYSEVGTGAQILQ 335 (369)
T ss_pred ccchhhhhcCCCCCccHHHHHHHHHHHHHhCCEEEEEecCCCchhhHHHHHHHHHhHhhCCCcccchhhhhhhHHHHHHH
Confidence 46789999884 34689999999764 5599886663222 0115678888888
Q ss_pred hcCCc
Q 010360 55 SEGYK 59 (512)
Q Consensus 55 ~~G~~ 59 (512)
.-|++
T Consensus 336 ~LGV~ 340 (369)
T PRK12485 336 DLGVG 340 (369)
T ss_pred HcCCC
Confidence 77764
No 24
>cd00641 GTP_cyclohydro2 GTP cyclohydrolase II (RibA). GTP cyclohydrolase II catalyzes the conversion of GTP to 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5' phosphate, formate, pyrophosphate (APy), and GMP in the biosynthetic pathway of riboflavin. Riboflavin is the precursor molecule for the synthesis of the coenzymes flavin mononucleotide (FMN) and flavin adenine dinucleotide (FAD) which are essential to cell metabolism. The enzyme is present in plants and numerous pathogenic bacteria, especially gram negative organisms, who are dependent on endogenous synthesis of the vitamin because they lack an appropriate uptake system. For animals and humans, which lack this biosynthetic pathway, riboflavin is the essential vitamin B2. GTP cyclohydrolase II requires magnesium ions for activity and has a bound catalytic zinc. The functionally active form is thought to be a homodimer. A paralogous protein is encoded in the genome of Streptomyces coelicolor, which converts GTP to 2-amino-5-fo
Probab=57.41 E-value=16 Score=35.33 Aligned_cols=33 Identities=24% Similarity=0.410 Sum_probs=25.1
Q ss_pred eccCCCCCCCCH---HHHHHHHHhcc-CCCCeEEEee
Q 010360 5 AICGDVFASPPV---DSILAGIHAVT-GPMGCLLIVT 37 (512)
Q Consensus 5 av~G~vFaSPs~---~~i~~ai~~~~-~~~Gvl~iv~ 37 (512)
+..+|||.+... .|+..|++.+. .+.|||+.+.
T Consensus 53 ~~~~Dvl~~~~~~~~~~L~~Al~~Ia~~g~GVlV~l~ 89 (193)
T cd00641 53 CLTGDVFGSLRCDCGPQLEEALEEIAEEGGGVLLYLR 89 (193)
T ss_pred CCHHHHhcCCCCCCcchHHHHHHHHHHhCCEEEEEEC
Confidence 457889986533 67888999986 5679988775
No 25
>PRK00393 ribA GTP cyclohydrolase II; Reviewed
Probab=56.09 E-value=16 Score=35.63 Aligned_cols=35 Identities=20% Similarity=0.276 Sum_probs=26.2
Q ss_pred eeccCCCCCCCCH---HHHHHHHHhcc-CCCCeEEEeec
Q 010360 4 AAICGDVFASPPV---DSILAGIHAVT-GPMGCLLIVTN 38 (512)
Q Consensus 4 aav~G~vFaSPs~---~~i~~ai~~~~-~~~Gvl~iv~N 38 (512)
.+..||||.|... .|+..|++.+. .+.|||+.+.+
T Consensus 53 ~~~~~Dvl~~~~~dc~~~L~~Al~~I~~~G~GVlVyL~~ 91 (197)
T PRK00393 53 ECLTGDALFSLRCDCGFQLEAALERIAEEGRGILLYLRQ 91 (197)
T ss_pred ccCHHHHhcCCCCCCcchHHHHHHHHHHcCCEEEEEEcC
Confidence 3567899987643 78888999986 56699887753
No 26
>PRK14484 phosphotransferase mannnose-specific family component IIA; Provisional
Probab=55.97 E-value=21 Score=32.48 Aligned_cols=77 Identities=27% Similarity=0.332 Sum_probs=56.6
Q ss_pred CHHHHHHHHHhccCCCCeEEEeeccccccccHHHHHHHHHhcCCcEEEEEecCcccCCCCCCCCCccccchhhhHHHHHh
Q 010360 15 PVDSILAGIHAVTGPMGCLLIVTNYTGDRLNFGLAAEQAKSEGYKVEIVIVGDDCALPPPRGIAGRRGLAGTILVNKIAG 94 (512)
Q Consensus 15 s~~~i~~ai~~~~~~~Gvl~iv~NYtGD~lnFg~A~e~a~~~G~~v~~v~v~DDva~~~~~~~~gRRG~aG~v~v~Ki~G 94 (512)
+.++|.++|+.+++ .|||+++== -|=.+|-.+|.|+...+ .+|++ .| ... + =|.+ .+-
T Consensus 44 ~~~~i~~ai~~~~~-dGVlVltDL-Gssp~n~~~a~e~~~~~-~~v~~---~d-aPl------V-----EGa~----~Aa 101 (124)
T PRK14484 44 SFDQIQEAIEKNES-DGVLIFFDL-GSAEMNAEMAIEMLDGE-KKIII---ID-API------V-----EGAF----TAA 101 (124)
T ss_pred hHHHHHHHHHhcCc-CCeEEEEeC-CChHHHHHHHHHhcCCC-CcEEE---EC-CcH------H-----HHHH----HHH
Confidence 57899999999999 999998876 89999999999998655 34443 33 211 1 1111 233
Q ss_pred HHHHcCCCHHHHHHHHHHH
Q 010360 95 AAAAAGLSLADVAAEAKRA 113 (512)
Q Consensus 95 A~A~~G~~l~~v~~~~~~~ 113 (512)
..+..|.+|++|.+.++..
T Consensus 102 v~~~~g~~l~~v~~~~~~~ 120 (124)
T PRK14484 102 VLLSAGASLDEILAELKEL 120 (124)
T ss_pred HHHcCCCCHHHHHHHHHHh
Confidence 4668999999999988864
No 27
>TIGR00505 ribA GTP cyclohydrolase II. Several members of the family are bifunctional, involving both ribA and ribB function. In these cases, ribA tends to be on the C-terminal end of the protein and ribB tends to be on the N-terminal. The function of archaeal members of the family has not been demonstrated and is assigned tentatively.
Probab=52.86 E-value=19 Score=34.80 Aligned_cols=34 Identities=18% Similarity=0.297 Sum_probs=25.7
Q ss_pred eeccCCCCCCCCH---HHHHHHHHhcc-CCCCeEEEee
Q 010360 4 AAICGDVFASPPV---DSILAGIHAVT-GPMGCLLIVT 37 (512)
Q Consensus 4 aav~G~vFaSPs~---~~i~~ai~~~~-~~~Gvl~iv~ 37 (512)
.+..||||.|... .|+..|++.+. .+.|||+.+.
T Consensus 50 ~~~~~Dvl~~~~~dc~~~L~~al~~i~~~G~GVlVyL~ 87 (191)
T TIGR00505 50 ECLTGDALHSLRCDCGFQLEAALKQIAEEGRGVLIYLR 87 (191)
T ss_pred ccCHHHHhcCCCCCCCchHHHHHHHHHhcCCEEEEEEC
Confidence 3567899987633 78888999876 5679988775
No 28
>PTZ00450 macrophage migration inhibitory factor-like protein; Provisional
Probab=47.86 E-value=30 Score=30.75 Aligned_cols=40 Identities=15% Similarity=0.265 Sum_probs=34.4
Q ss_pred EEEEcCCCCChHHHHHHHHHHHHHhhhhhcCCeEEEeeec
Q 010360 191 VLMINGLGATPVMELMIAAGKAVPNLQLEHGLAVERVYTG 230 (512)
Q Consensus 191 ~vlvNnlG~ts~~El~~~~~~~~~~L~~~~gi~v~r~~~G 230 (512)
.+=|..+|+.+.-.---+...+.+.|++++||...|+|+-
T Consensus 60 ~~~l~siG~~~~~~n~~~s~~i~~~l~~~LgIp~dRiYI~ 99 (113)
T PTZ00450 60 YVRVEAWGEYAPSKPKMMTPRITAAITKECGIPAERIYVF 99 (113)
T ss_pred EEEEEEecCcCHHHHHHHHHHHHHHHHHHcCCCcccEEEE
Confidence 3448999999887677788999999999999999999984
No 29
>PLN02831 Bifunctional GTP cyclohydrolase II/ 3,4-dihydroxy-2-butanone-4-phosphate synthase
Probab=47.08 E-value=18 Score=39.83 Aligned_cols=39 Identities=18% Similarity=0.444 Sum_probs=29.1
Q ss_pred ceeccCCCCCCCCH---HHHHHHHHhcc-CCCCeEEEeecccc
Q 010360 3 TAAICGDVFASPPV---DSILAGIHAVT-GPMGCLLIVTNYTG 41 (512)
Q Consensus 3 ~aav~G~vFaSPs~---~~i~~ai~~~~-~~~Gvl~iv~NYtG 41 (512)
+.+..||||-|... .|+-+|++.+. .+.|||+.+-|-.|
T Consensus 290 Sec~tgDvfgs~rCdCg~qL~~Al~~I~~~G~GVlvYLr~qeg 332 (450)
T PLN02831 290 SECLTGDIFGSARCDCGNQLALAMQLIEKAGRGVLVYLRGHEG 332 (450)
T ss_pred ccCCHHHHhcCCCCCCcchHHHHHHHHHHcCCEEEEEEcCCCc
Confidence 34678999998744 78889999986 56699887763443
No 30
>cd00615 Orn_deC_like Ornithine decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life.
Probab=45.72 E-value=49 Score=33.54 Aligned_cols=54 Identities=15% Similarity=0.247 Sum_probs=39.6
Q ss_pred CCCCHHHHHHHHHhccCCCCeEEEeeccccccccHHHHHHHHHhcCCcEEEEEecCcc
Q 010360 12 ASPPVDSILAGIHAVTGPMGCLLIVTNYTGDRLNFGLAAEQAKSEGYKVEIVIVGDDC 69 (512)
Q Consensus 12 aSPs~~~i~~ai~~~~~~~Gvl~iv~NYtGD~lnFg~A~e~a~~~G~~v~~v~v~DDv 69 (512)
...+++++.++++.-...+.|++.--||+|.+.+..--++.+++.|+ .++-|++
T Consensus 138 ~~i~~~~l~~~l~~~~~~k~v~l~~p~~~G~~~dl~~I~~~~~~~g~----~livDeA 191 (294)
T cd00615 138 GGIPPETFKKALIEHPDAKAAVITNPTYYGICYNLRKIVEEAHHRGL----PVLVDEA 191 (294)
T ss_pred CCCCHHHHHHHHHhCCCceEEEEECCCCCCEecCHHHHHHHHHhcCC----eEEEECc
Confidence 46688999988876334455555556999999999888899988875 3445555
No 31
>PF02645 DegV: Uncharacterised protein, DegV family COG1307; InterPro: IPR003797 This family of proteins is related to DegV of Bacillus subtilis and includes paralogous sets in several species (B. subtilis, Deinococcus radiodurans, Mycoplasma pneumoniae) that are closer in percent identity to each other than to most homologs from other species. This suggests both recent paralogy and diversity of function.; PDB: 2DT8_A 3LUP_A 3NYI_B 3PL5_A 1PZX_B 1MGP_A 1VPV_B 3FYS_A 3EGL_C 3JR7_A ....
Probab=45.53 E-value=71 Score=32.46 Aligned_cols=185 Identities=15% Similarity=0.130 Sum_probs=98.0
Q ss_pred CCCCHHHHHHHHHh-ccCCCC-eEEEe--eccccccccHHHHHHHHHhcCCcEEEEEecCcccCCCCCCCCCccccchhh
Q 010360 12 ASPPVDSILAGIHA-VTGPMG-CLLIV--TNYTGDRLNFGLAAEQAKSEGYKVEIVIVGDDCALPPPRGIAGRRGLAGTI 87 (512)
Q Consensus 12 aSPs~~~i~~ai~~-~~~~~G-vl~iv--~NYtGD~lnFg~A~e~a~~~G~~v~~v~v~DDva~~~~~~~~gRRG~aG~v 87 (512)
+.||+.++.+..+. ...+.- ||+|- ...+|=-=|.-+|+++. .+.+|.+ + | -|-.-+|.-
T Consensus 61 S~ps~~~~~~~f~~~~~~gyd~ii~i~iSs~LSgty~~a~~aa~~~--~~~~i~V--i-D-----------S~~~s~g~g 124 (280)
T PF02645_consen 61 SQPSPGEFEEAFEKLLEEGYDEIIVITISSGLSGTYNSARLAAKML--PDIKIHV--I-D-----------SKSVSAGQG 124 (280)
T ss_dssp E---HHHHHHHHHHHHHTTTSEEEEEES-TTT-THHHHHHHHHHHH--TTTEEEE--E-E------------SS-HHHHH
T ss_pred cCCCHHHHHHHHHHHHHCCCCeEEEEeCCcchhhHHHHHHHHHhhc--CcCEEEE--E-e-----------CCCcchhhh
Confidence 45889999999987 665544 66654 34556555666666666 3444433 2 2 133445666
Q ss_pred hHHHHHhHHHHcCCCHHHHHHHHHHHHhhhcccceecc------ccccCC----------CCCCCCcCCCeeEEeccccC
Q 010360 88 LVNKIAGAAAAAGLSLADVAAEAKRASEMVGTMGVALS------VCTLPG----------QVTSDRLGPGKMELGLGIHG 151 (512)
Q Consensus 88 ~v~Ki~GA~A~~G~~l~~v~~~~~~~~~~~~t~gval~------~c~~P~----------~~~~~~l~~~e~E~G~GiHg 151 (512)
++..-+-.++++|.|++||.+..++..+++.+.=+-=+ +--++. =+|-..+.+|+++.
T Consensus 125 ~lv~~a~~l~~~G~s~~ei~~~l~~~~~~~~~~f~~~~L~~L~kgGRis~~~a~ig~lL~IkPIl~~~~G~i~~------ 198 (280)
T PF02645_consen 125 LLVLEAAKLIEQGKSFEEIVEKLEELRERTRTYFVVDDLKYLRKGGRISKAAAFIGNLLNIKPILSFDDGEIEP------ 198 (280)
T ss_dssp HHHHHHHHHHHTT--HHHHHHHHHHHHHTEEEEEEES-SHHHHHCTSSGHHHHHHHHCTTEEEEEEEETTEEEE------
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHhhceEEEEechHHHHHHCCCcCchhhhhhhhhcCcEEEEEECCEEEE------
Confidence 66666779999999999999999999999887643111 000110 01222333333332
Q ss_pred CCCcccccCCCHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEcCCCCChHHHHHHHHHHHHHhhhhhcCC-eEEEeeec
Q 010360 152 EPGAAVADLQPVDVVVSHVLKQILSTETNYVPITRGNRVVLMINGLGATPVMELMIAAGKAVPNLQLEHGL-AVERVYTG 230 (512)
Q Consensus 152 EpG~~~~~~~~a~~lv~~ml~~ll~~~~~~~~~~~~~~v~vlvNnlG~ts~~El~~~~~~~~~~L~~~~gi-~v~r~~~G 230 (512)
..+..+.+..+++|++.+... .. ......+.+...- .. |. +.++.+.|+++++. .+....+|
T Consensus 199 -----~~k~Rg~kka~~~l~~~~~~~----~~-~~~~~~i~i~~~~---~~-e~---a~~l~~~l~~~~~~~~~~~~~~~ 261 (280)
T PF02645_consen 199 -----VGKVRGRKKAIKKLIEIIKEE----IK-DPKNYRIAISHAG---NE-EE---AEELKEELKEEFPNAEIIISPIG 261 (280)
T ss_dssp -----EEEESSHHHHHHHHHHHHHHH----HC-TGCGEEEEEEESS----H-HH---HHHHHHHHHHHSTTEEEEEEE--
T ss_pred -----EeeeccHHHHHHHHHHHhhhh----hh-cCCceeEEEEEcC---CH-HH---HHHHHHHHHHhcCCCcEEEEEEC
Confidence 245567778888888887432 11 1223333333332 22 33 34455555566555 45445556
Q ss_pred ccccc
Q 010360 231 SFMTS 235 (512)
Q Consensus 231 ~~~TS 235 (512)
+-+++
T Consensus 262 ~~i~~ 266 (280)
T PF02645_consen 262 PVIGA 266 (280)
T ss_dssp HHHHH
T ss_pred cEEEE
Confidence 55543
No 32
>PRK08815 GTP cyclohydrolase; Provisional
Probab=44.33 E-value=19 Score=38.77 Aligned_cols=38 Identities=26% Similarity=0.424 Sum_probs=28.1
Q ss_pred eeccCCCCCCCC---HHHHHHHHHhcc-CCCCeEEEeeccccc
Q 010360 4 AAICGDVFASPP---VDSILAGIHAVT-GPMGCLLIVTNYTGD 42 (512)
Q Consensus 4 aav~G~vFaSPs---~~~i~~ai~~~~-~~~Gvl~iv~NYtGD 42 (512)
.+..||||-|.. -.|.-+|++.+. .+.|||+.+ |-.|-
T Consensus 224 ~c~tgDvfgs~~cdc~~qL~~Al~~I~~~G~GVlvyL-~qegr 265 (375)
T PRK08815 224 SCLTGDLFGSLKCDCGDQLRHGLAKLKELGGGVLLYL-DQEGR 265 (375)
T ss_pred cCcHHHHhcCCCCCCHHHHHHHHHHHHhhCCEEEEEE-cCCCc
Confidence 467799998753 378888999975 567998876 54543
No 33
>PTZ00397 macrophage migration inhibition factor-like protein; Provisional
Probab=43.84 E-value=44 Score=29.34 Aligned_cols=41 Identities=17% Similarity=0.167 Sum_probs=35.5
Q ss_pred EEEEEcCCCCChHHHHHHHHHHHHHhhhhhcCCeEEEeeec
Q 010360 190 VVLMINGLGATPVMELMIAAGKAVPNLQLEHGLAVERVYTG 230 (512)
Q Consensus 190 v~vlvNnlG~ts~~El~~~~~~~~~~L~~~~gi~v~r~~~G 230 (512)
+.+=|...|+.+....--+++++.+.|++.+|+.+.|+|+-
T Consensus 59 a~v~i~~~g~~~~e~k~~l~~~i~~~l~~~lgi~~~rv~I~ 99 (116)
T PTZ00397 59 CFVRVTSIGGISRSNNSSIAAAITKILASHLKVKSERVYIE 99 (116)
T ss_pred EEEEEEEecCCCHHHHHHHHHHHHHHHHHHhCcCcccEEEE
Confidence 34447888999987788899999999999999999999984
No 34
>PRK14019 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II-like protein; Provisional
Probab=41.71 E-value=29 Score=37.22 Aligned_cols=56 Identities=18% Similarity=0.233 Sum_probs=39.7
Q ss_pred eeccCCCCCCC---CHHHHHHHHHhcc-CCCCeEEEeecc-cc---------------------ccccHHHHHHHHHhcC
Q 010360 4 AAICGDVFASP---PVDSILAGIHAVT-GPMGCLLIVTNY-TG---------------------DRLNFGLAAEQAKSEG 57 (512)
Q Consensus 4 aav~G~vFaSP---s~~~i~~ai~~~~-~~~Gvl~iv~NY-tG---------------------D~lnFg~A~e~a~~~G 57 (512)
.+..||||-|- ...|+..|++.+. .+.|||+...|- .| |-=+||+|++..+.-|
T Consensus 256 ~c~tgDvfgs~~cdcg~qL~~al~~I~~~G~GvlvyL~qegrgigl~~k~~~~~~an~~lg~~~d~R~y~igaqIL~~Lg 335 (367)
T PRK14019 256 PLSVLDLLEVGQPTHSWSLDAAMAAIAEAGSGVVVLLNCGDDGEHLLDRFRAEEAAAALKRRPVDYRTYGIGAQILRDLG 335 (367)
T ss_pred ccchHhHhcCCCCCcHHHHHHHHHHHHhcCCEEEEEEccCCchhhHHHhhhhhhhhhhhcCCCcccceehHHHHHHHHcC
Confidence 45679999874 3578999999976 556998877543 12 3446777888887777
Q ss_pred Cc
Q 010360 58 YK 59 (512)
Q Consensus 58 ~~ 59 (512)
++
T Consensus 336 v~ 337 (367)
T PRK14019 336 VG 337 (367)
T ss_pred CC
Confidence 64
No 35
>PRK09311 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional
Probab=41.36 E-value=32 Score=37.30 Aligned_cols=34 Identities=24% Similarity=0.372 Sum_probs=26.4
Q ss_pred eeccCCCCCCCC---HHHHHHHHHhcc-CCCCeEEEee
Q 010360 4 AAICGDVFASPP---VDSILAGIHAVT-GPMGCLLIVT 37 (512)
Q Consensus 4 aav~G~vFaSPs---~~~i~~ai~~~~-~~~Gvl~iv~ 37 (512)
.+..||||-|-. ..|+-.|++.+. .+.|||+.+.
T Consensus 257 ~c~tgDvfgs~~cdc~~qL~~Al~~I~~eG~GvlvyL~ 294 (402)
T PRK09311 257 ECLTGDVFGSRRCDCGPQLDAALAQIAEEGRGVVLYMR 294 (402)
T ss_pred cCCHHHHhcCCCCCCcchHHHHHHHHHHcCCEEEEEEe
Confidence 467899998753 378889999976 5669988776
No 36
>COG1416 Uncharacterized conserved protein [Function unknown]
Probab=41.30 E-value=53 Score=29.42 Aligned_cols=71 Identities=15% Similarity=0.153 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHhcccCCCCCCCCCeEEEEEcCCCCChHHHHHHHHHHHHHhhhhhcCCeEEEeeecccccccCCCcc
Q 010360 164 DVVVSHVLKQILSTETNYVPITRGNRVVLMINGLGATPVMELMIAAGKAVPNLQLEHGLAVERVYTGSFMTSLDMAGF 241 (512)
Q Consensus 164 ~~lv~~ml~~ll~~~~~~~~~~~~~~v~vlvNnlG~ts~~El~~~~~~~~~~L~~~~gi~v~r~~~G~~~TSl~m~Gf 241 (512)
.+-+..++..|.+ ++...+..++.|.+||-|-....+-..........|.++ |+++. -+|+=|++.+++.-
T Consensus 13 ~~k~~~~l~Nl~N----ll~~~p~~~IeVV~~g~ai~~l~~~~~~~~~~~~~L~~~-GV~~~--aC~nSl~a~~i~~d 83 (112)
T COG1416 13 ESKVNMVLGNLTN----LLEDDPSVEIEVVAHGPAIAFLSEKANIAAVRVAELAQQ-GVEFV--ACGNSLRAHDIDED 83 (112)
T ss_pred HHHHHHHHHHHHH----HhcCCCCceEEEEEeCchhHHhhhhccchhHHHHHHHHC-CCEEE--EecchHHHcCCCHH
Confidence 5666777777754 456567889999999999888887777776566777777 87764 78999999988754
No 37
>PLN03065 isocitrate dehydrogenase (NADP+); Provisional
Probab=40.61 E-value=1.9e+02 Score=32.23 Aligned_cols=134 Identities=17% Similarity=0.162 Sum_probs=77.4
Q ss_pred HHhccCCCCeEEEeeccccccccHHHHHHHHHhcCCcEEEEEecCccc---CCCCCCCCCccc---cchh-------hhH
Q 010360 23 IHAVTGPMGCLLIVTNYTGDRLNFGLAAEQAKSEGYKVEIVIVGDDCA---LPPPRGIAGRRG---LAGT-------ILV 89 (512)
Q Consensus 23 i~~~~~~~Gvl~iv~NYtGD~lnFg~A~e~a~~~G~~v~~v~v~DDva---~~~~~~~~gRRG---~aG~-------v~v 89 (512)
.+.+.++.|-+++.+||-||+|. .+++...-.-|+- -.+.|+||-. ..+..+.+-|.- ++|. -.+
T Consensus 325 ~~lvk~P~~FViv~~NlfGDIlS-Dl~A~l~GsLGl~-pSanig~dg~~~~fEa~HGSapd~~~~~iaGk~t~ANPiA~I 402 (483)
T PLN03065 325 AYAVKSEGGYVWACKNYDGDVQS-DLLAQGFGSLGLM-TSVLLSSDGKTLEAEAAHGTVTRHFRLHQKGQETSTNSIASI 402 (483)
T ss_pred HHHHhCCCCcEEEeeccchhhhh-HHHHHhcCchhhc-ccceeCCCCceEEEecCcCcCccccchhccCCCCCcChHHHH
Confidence 46778888999999999999997 5888888888854 5567788853 233334333311 2222 234
Q ss_pred HHHHhHHHHcCCC--HHHHHHHHHHHHhhhc-ccceeccccccCCCCCCCCcCCCeeEEeccccCCCCcccccCCCHHHH
Q 010360 90 NKIAGAAAAAGLS--LADVAAEAKRASEMVG-TMGVALSVCTLPGQVTSDRLGPGKMELGLGIHGEPGAAVADLQPVDVV 166 (512)
Q Consensus 90 ~Ki~GA~A~~G~~--l~~v~~~~~~~~~~~~-t~gval~~c~~P~~~~~~~l~~~e~E~G~GiHgEpG~~~~~~~~a~~l 166 (512)
+=.+..+...|.. -+++.+.|+++-+.+. |+.- | .-+- .+|.=+||. ...+....+-.|+
T Consensus 403 lA~ammL~hlg~ld~~~~l~~~A~~Le~Av~~tie~--------G-~~T~-------DLg~~~~G~-~~~~~~~~~T~ef 465 (483)
T PLN03065 403 FAWTRGLEHRAKLDKNEELLDFVHKLESACIETVES--------G-KMTK-------DLAILIHGP-KVSREFYLNTEEF 465 (483)
T ss_pred HHHHHHHHHhCCCCccchHHHHHHHHHHHHHHHHHc--------C-Cccc-------ccccccCCC-cccCCCCcCHHHH
Confidence 4445555556652 2345555555544432 2211 1 0011 234446772 2234556677888
Q ss_pred HHHHHHHHH
Q 010360 167 VSHVLKQIL 175 (512)
Q Consensus 167 v~~ml~~ll 175 (512)
.+.++++|-
T Consensus 466 ~daV~~~L~ 474 (483)
T PLN03065 466 IDAVAQTLA 474 (483)
T ss_pred HHHHHHHHH
Confidence 888888874
No 38
>PF13684 Dak1_2: Dihydroxyacetone kinase family
Probab=40.25 E-value=4.5e+02 Score=27.41 Aligned_cols=174 Identities=20% Similarity=0.285 Sum_probs=100.3
Q ss_pred eeccCCCCCCCCHHHHHHHHHhccCCCCeEEEeeccccccccHHHHHHHHHhc--CCcEEEEEecCcccCCCCCCCCCcc
Q 010360 4 AAICGDVFASPPVDSILAGIHAVTGPMGCLLIVTNYTGDRLNFGLAAEQAKSE--GYKVEIVIVGDDCALPPPRGIAGRR 81 (512)
Q Consensus 4 aav~G~vFaSPs~~~i~~ai~~~~~~~Gvl~iv~NYtGD~lnFg~A~e~a~~~--G~~v~~v~v~DDva~~~~~~~~gRR 81 (512)
..|.|.-=-.||+..+++||+.++... |+++-.| -|.=||+++|... +.+|.+| |.+ .=-.
T Consensus 119 ~vi~ggqt~nPS~~dl~~Ai~~~~a~~-VivLPNn-----~ni~~aa~qa~~~~~~~~v~Vi---------pTk--s~~q 181 (313)
T PF13684_consen 119 VVISGGQTMNPSTEDLLNAIEKVGADE-VIVLPNN-----KNIILAAEQAARLSEDKNVVVI---------PTK--SIPQ 181 (313)
T ss_pred EEEeCCCCCCCCHHHHHHHHHhCCCCe-EEEEeCC-----chHHHHHHHHHHHhcCCCEEEE---------ecC--CHHH
Confidence 445555545899999999999986554 6666554 4677777777653 2232222 112 1223
Q ss_pred ccchhhhHHHHHhHHHHcCCCHHHHHHHHHHHHhhhcccceecc--ccccCCCCCCCCcCCCeeEEeccccCCCCccccc
Q 010360 82 GLAGTILVNKIAGAAAAAGLSLADVAAEAKRASEMVGTMGVALS--VCTLPGQVTSDRLGPGKMELGLGIHGEPGAAVAD 159 (512)
Q Consensus 82 G~aG~v~v~Ki~GA~A~~G~~l~~v~~~~~~~~~~~~t~gval~--~c~~P~~~~~~~l~~~e~E~G~GiHgEpG~~~~~ 159 (512)
|++..+ +-+...++++-.+.-+.+..+++|.-|.-. .-.+++ +....|.. +||.+.--+...
T Consensus 182 GlaAl~--------~~dp~~~~~~n~~~M~ea~~~v~~~~It~Avrd~~~~~----~~i~~gd~---igl~~~~i~~~~- 245 (313)
T PF13684_consen 182 GLAALL--------VFDPEADLEENVEAMTEAAARVRTGEITYAVRDTKING----GEIKKGDY---IGLVDGKIVVVG- 245 (313)
T ss_pred HHHHHH--------HhCccCChHHHHHHHHHHHhhCeeeeEEEeeecceecC----cccccCCE---EEEeCCEEEEEc-
Confidence 433211 114445888888888888888887766443 222222 22333333 555444433332
Q ss_pred CCCHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEcCCCCChHHHHHHHHHHHHHhhhhhc-CCeEE
Q 010360 160 LQPVDVVVSHVLKQILSTETNYVPITRGNRVVLMINGLGATPVMELMIAAGKAVPNLQLEH-GLAVE 225 (512)
Q Consensus 160 ~~~a~~lv~~ml~~ll~~~~~~~~~~~~~~v~vlvNnlG~ts~~El~~~~~~~~~~L~~~~-gi~v~ 225 (512)
.+..+.+..+++++++ ++.+++-++=| ..++.-|- ..+.++|+++| ++.+.
T Consensus 246 -~~~~~~~~~ll~~l~~---------~~~elvTi~~G-~~~~~~~a----~~l~~~l~~~~p~~eve 297 (313)
T PF13684_consen 246 -KDLEEALKKLLEKLLD---------EDGELVTIYYG-EDVSEEEA----EALAEFLEEKYPDVEVE 297 (313)
T ss_pred -CCHHHHHHHHHHHhhc---------cCCeEEEEEec-CCCCHHHH----HHHHHHHHHHhCCeEEE
Confidence 3477888888888854 35688888877 44444344 44555555555 55555
No 39
>TIGR00762 DegV EDD domain protein, DegV family. This family of proteins is related to DegV of Bacillus subtilis and includes paralogous sets in several species (B. subtilis, Deinococcus radiodurans, Mycoplasma pneumoniae) that are closer in percent identity to each than to most homologs from other species. This suggests both recent paralogy and diversity of function. DegV itself is encoded immediately downstream of DegU, a transcriptional regulator of degradation, but is itself uncharacterized. Crystallography suggested a lipid-binding site, while comparison of the crystal structure to dihydroxyacetone kinase and to a mannose transporter EIIA domain suggests a conserved domain, EDD, with phosphotransferase activity.
Probab=40.09 E-value=1.1e+02 Score=31.01 Aligned_cols=95 Identities=23% Similarity=0.151 Sum_probs=64.1
Q ss_pred CCCCHHHHHHHHHhcc-CCCCeEEEe--eccccccccHHHHHHHHHhcCCcEEEEEecCcccCCCCCCCCCccccchhhh
Q 010360 12 ASPPVDSILAGIHAVT-GPMGCLLIV--TNYTGDRLNFGLAAEQAKSEGYKVEIVIVGDDCALPPPRGIAGRRGLAGTIL 88 (512)
Q Consensus 12 aSPs~~~i~~ai~~~~-~~~Gvl~iv--~NYtGD~lnFg~A~e~a~~~G~~v~~v~v~DDva~~~~~~~~gRRG~aG~v~ 88 (512)
+.||+.++.++++... .+.-||+|- ..-+|=.=|+-+|+++.. +++| .|=| -|-.-+|.-+
T Consensus 60 S~ps~~~~~~~~~~l~~~~~~vi~i~iSs~lSgty~~a~~aa~~~~--~~~i---~ViD-----------S~~~s~~~g~ 123 (275)
T TIGR00762 60 SQPSPGEFLELYEKLLEEGDEVLSIHLSSGLSGTYQSARQAAEMVD--EAKV---TVID-----------SKSASMGLGL 123 (275)
T ss_pred CCCCHHHHHHHHHHHHhCCCeEEEEEcCCchhHHHHHHHHHHhhCC--CCCE---EEEC-----------ChHHHHHHHH
Confidence 3478888888987654 334465553 344555455555555542 2332 2223 2344567778
Q ss_pred HHHHHhHHHHcCCCHHHHHHHHHHHHhhhcccce
Q 010360 89 VNKIAGAAAAAGLSLADVAAEAKRASEMVGTMGV 122 (512)
Q Consensus 89 v~Ki~GA~A~~G~~l~~v~~~~~~~~~~~~t~gv 122 (512)
+..-+..+.++|.+++||.+..++..+++.+.=+
T Consensus 124 ~v~~a~~~~~~G~s~~eI~~~l~~~~~~~~~~f~ 157 (275)
T TIGR00762 124 LVLEAAKLAEEGKSLEEILAKLEELRERTKLYFV 157 (275)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhhcEEEEE
Confidence 8888999999999999999999999999887643
No 40
>PF00975 Thioesterase: Thioesterase domain; InterPro: IPR001031 Thioesterase domains often occur integrated in or associated with peptide synthetases which are involved in the non-ribosomal synthesis of peptide antibiotics []. Thioesterases are required for the addition of the last amino acid to the peptide antibiotic, thereby forming a cyclic antibiotic. Next to the operons encoding these enzymes, in almost all cases, are genes that encode proteins that have similarity to the type II fatty acid thioesterases of vertebrates.; GO: 0016788 hydrolase activity, acting on ester bonds, 0009058 biosynthetic process; PDB: 2RON_A 2K2Q_B 3LCR_B 2HFJ_B 1MNQ_A 1MN6_B 1MNA_B 2HFK_B 2H7Y_B 2H7X_A ....
Probab=36.59 E-value=59 Score=30.86 Aligned_cols=76 Identities=20% Similarity=0.158 Sum_probs=53.8
Q ss_pred EEeccccCCCCcccccCCCHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEcCCCCChHHHHHHHHHHHHHhhhhhcCCe
Q 010360 144 ELGLGIHGEPGAAVADLQPVDVVVSHVLKQILSTETNYVPITRGNRVVLMINGLGATPVMELMIAAGKAVPNLQLEHGLA 223 (512)
Q Consensus 144 E~G~GiHgEpG~~~~~~~~a~~lv~~ml~~ll~~~~~~~~~~~~~~v~vlvNnlG~ts~~El~~~~~~~~~~L~~~~gi~ 223 (512)
-+|+-.+|.. ....+..+.+++++..++.|... .+..+++++=-.+|| +|+-++.++|+++ |.+
T Consensus 30 v~~i~~~~~~-~~~~~~~si~~la~~y~~~I~~~-------~~~gp~~L~G~S~Gg-------~lA~E~A~~Le~~-G~~ 93 (229)
T PF00975_consen 30 VYGIEYPGRG-DDEPPPDSIEELASRYAEAIRAR-------QPEGPYVLAGWSFGG-------ILAFEMARQLEEA-GEE 93 (229)
T ss_dssp EEEECSTTSC-TTSHEESSHHHHHHHHHHHHHHH-------TSSSSEEEEEETHHH-------HHHHHHHHHHHHT-T-S
T ss_pred EEEEecCCCC-CCCCCCCCHHHHHHHHHHHhhhh-------CCCCCeeehccCccH-------HHHHHHHHHHHHh-hhc
Confidence 3444444433 33456689999999999999763 223389999999997 6778889999999 999
Q ss_pred EEEee-ecccccc
Q 010360 224 VERVY-TGSFMTS 235 (512)
Q Consensus 224 v~r~~-~G~~~TS 235 (512)
|.+++ +....+.
T Consensus 94 v~~l~liD~~~p~ 106 (229)
T PF00975_consen 94 VSRLILIDSPPPS 106 (229)
T ss_dssp ESEEEEESCSSTT
T ss_pred cCceEEecCCCCC
Confidence 98765 4544443
No 41
>COG1732 OpuBC Periplasmic glycine betaine/choline-binding (lipo)protein of an ABC-type transport system (osmoprotectant binding protein) [Cell envelope biogenesis, outer membrane]
Probab=34.42 E-value=81 Score=32.96 Aligned_cols=85 Identities=27% Similarity=0.384 Sum_probs=59.0
Q ss_pred ceeccccccCCCCCCCCcCCCeeEEeccccCCCCcccccCCCHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEcCCCCC
Q 010360 121 GVALSVCTLPGQVTSDRLGPGKMELGLGIHGEPGAAVADLQPVDVVVSHVLKQILSTETNYVPITRGNRVVLMINGLGAT 200 (512)
Q Consensus 121 gval~~c~~P~~~~~~~l~~~e~E~G~GiHgEpG~~~~~~~~a~~lv~~ml~~ll~~~~~~~~~~~~~~v~vlvNnlG~t 200 (512)
-++|..|+.|+..+ ...+..+-||-.+-.|+ .++..|+..++++. +=-+...+|||+|
T Consensus 15 ~~~l~~~s~~~~~~--~~~~~~I~VgsK~~tE~-----------~IL~~m~~~lle~~---------~~kv~~~~~lG~t 72 (300)
T COG1732 15 LLLLAACSLPGLGS--ASAAKTIVVGSKIFTEQ-----------YILGNILKQLLEKN---------GIKVEDKTGLGGT 72 (300)
T ss_pred HHHHHHhccccccc--cccCCCEEEecCCCcHH-----------HHHHHHHHHHHHhc---------CCceeeccCCCch
Confidence 45677898887322 44667777776665554 68889999998751 2235668899999
Q ss_pred hHHHHHHHHHHHHHhhhhhcCCeEEEeeecccccccC
Q 010360 201 PVMELMIAAGKAVPNLQLEHGLAVERVYTGSFMTSLD 237 (512)
Q Consensus 201 s~~El~~~~~~~~~~L~~~~gi~v~r~~~G~~~TSl~ 237 (512)
+. +++.|..- .|.+.--|.|+-.+++.
T Consensus 73 ~v---------~~~Al~~G-~IDiYpEYTGt~~~~~l 99 (300)
T COG1732 73 AV---------VRNALKSG-DIDIYPEYTGTALFSFL 99 (300)
T ss_pred HH---------HHHHHHcC-CCCeEeeecchhhhhhc
Confidence 75 34445555 78898889998776654
No 42
>PRK05340 UDP-2,3-diacylglucosamine hydrolase; Provisional
Probab=32.77 E-value=51 Score=32.52 Aligned_cols=36 Identities=31% Similarity=0.509 Sum_probs=28.3
Q ss_pred eccCCCCC--------CCCHHHHHHHHHhcc-CCCCeEEEeeccc
Q 010360 5 AICGDVFA--------SPPVDSILAGIHAVT-GPMGCLLIVTNYT 40 (512)
Q Consensus 5 av~G~vFa--------SPs~~~i~~ai~~~~-~~~Gvl~iv~NYt 40 (512)
.++||+|- +|....+.+.++... .+..|.+|.+|+-
T Consensus 37 ~i~GDl~d~~~g~~~~~~~~~~~~~~l~~l~~~g~~v~~v~GNHD 81 (241)
T PRK05340 37 YILGDLFEAWIGDDDPSPFAREIAAALKALSDSGVPCYFMHGNRD 81 (241)
T ss_pred EEccceeccccccCcCCHHHHHHHHHHHHHHHcCCeEEEEeCCCc
Confidence 47899994 566778888887775 4478999999995
No 43
>PRK09318 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional
Probab=30.43 E-value=39 Score=36.54 Aligned_cols=39 Identities=15% Similarity=0.302 Sum_probs=27.8
Q ss_pred ceeccCCCCCCCCH---HHHHHHHHhccCCCCeEEEeeccccc
Q 010360 3 TAAICGDVFASPPV---DSILAGIHAVTGPMGCLLIVTNYTGD 42 (512)
Q Consensus 3 ~aav~G~vFaSPs~---~~i~~ai~~~~~~~Gvl~iv~NYtGD 42 (512)
+.+..||||-|-.. .|+-.|++.+....|||+.. |..|-
T Consensus 239 Sec~tgDvfgs~~CdCg~qL~~Al~~Ia~eGGvlvYL-rqegr 280 (387)
T PRK09318 239 SECVTGDTLSSLRCDCGSQLANFLRMISKEGGILIYL-RQEGR 280 (387)
T ss_pred ecccHHHHhcCCCCCCcchHHHHHHHHHHcCCEEEEE-CCCCc
Confidence 34678999988543 78999999986434998654 55543
No 44
>PF03793 PASTA: PASTA domain; InterPro: IPR005543 The PASTA domain is found at the C-termini of several Penicillin-binding proteins (PBP) and bacterial serine/threonine kinases. It binds the beta-lactam stem, which implicates it in sensing D-alanyl-D-alanine - the PBP transpeptidase substrate. In PknB of Mycobacterium tuberculosis (P71584 from SWISSPROT), all of the extracellular portion is predicted to be made up of four PASTA domains, which strongly suggests that it is a signal-binding sensor domain. The domain has also been found in proteins involved in cell wall biosynthesis, where it is implicated in localizing the biosynthesis complex to unlinked peptidoglycan. PASTA is a small globular fold consisting of 3 beta-sheets and an alpha-helix, with a loop region of variable length between the first and second beta-strands. The name PASTA is derived from PBP and Serine/Threonine kinase Associated domain [].; GO: 0008658 penicillin binding; PDB: 2ZC3_C 1QME_A 1RP5_B 2Z2M_C 2Z2L_F 2ZC4_C 1QMF_A 3M9G_A 3PY9_A 1K25_B ....
Probab=29.25 E-value=90 Score=23.88 Aligned_cols=30 Identities=20% Similarity=0.374 Sum_probs=24.6
Q ss_pred EEeeccccccccHHHHHHHHHhcCCcEEEEEe
Q 010360 34 LIVTNYTGDRLNFGLAAEQAKSEGYKVEIVIV 65 (512)
Q Consensus 34 ~iv~NYtGD~lnFg~A~e~a~~~G~~v~~v~v 65 (512)
+.+-||+| |+..-|.+.+++.|+++..+-.
T Consensus 1 V~vPd~~g--~~~~~a~~~l~~~g~~~~~~~~ 30 (63)
T PF03793_consen 1 VTVPDLVG--MTYDEAKSILEAAGLTVNVVEE 30 (63)
T ss_dssp EEE-TTTT--SBHHHHHHHHHHTT-EEEEEEE
T ss_pred CCCCCcCC--CcHHHHHHHHHHCCCEEEEEEE
Confidence 35789999 9999999999999998887775
No 45
>PF02955 GSH-S_ATP: Prokaryotic glutathione synthetase, ATP-grasp domain; InterPro: IPR004218 Prokaryotic glutathione synthetase 6.3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This is the ATP-binding domain of the enzyme.; GO: 0004363 glutathione synthase activity, 0005524 ATP binding, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A.
Probab=29.14 E-value=1e+02 Score=29.48 Aligned_cols=83 Identities=17% Similarity=0.370 Sum_probs=48.0
Q ss_pred cCCCCcccccC--CCHHHHHHHHHHHHHhcc------cCCCC-CCCCCeEEEEEcC--------------------CCCC
Q 010360 150 HGEPGAAVADL--QPVDVVVSHVLKQILSTE------TNYVP-ITRGNRVVLMING--------------------LGAT 200 (512)
Q Consensus 150 HgEpG~~~~~~--~~a~~lv~~ml~~ll~~~------~~~~~-~~~~~~v~vlvNn--------------------lG~t 200 (512)
+|..|+.|... ++.+.++ +.+.... +.|++ .+.||+=++++|| .||+
T Consensus 42 ~gG~gV~~i~~~~~n~~~i~----e~~~~~~~~~~mvQ~flp~i~~GDkRii~~nG~~~~av~R~P~~gd~R~N~~~Gg~ 117 (173)
T PF02955_consen 42 MGGRGVFRISRDDPNLNSIL----ETLTKNGERPVMVQPFLPEIKEGDKRIILFNGEPSHAVRRIPAKGDFRSNLAAGGS 117 (173)
T ss_dssp -TTTT-EEE-TT-TTHHHHH----HHHTTTTTS-EEEEE--GGGGG-EEEEEEETTEE-SEEEEE--SS-S---GGGTSC
T ss_pred CCCcCEEEEcCCCCCHHHHH----HHHHhcCCccEEEEeccccccCCCEEEEEECCEEhHHeecCCCCCCceeeeccCCc
Confidence 44556555433 3444444 4443322 34665 5678989999997 5665
Q ss_pred h-----HHHHHHHHHHHHHhhhhhcCCeEEEe-eecccccccC
Q 010360 201 P-----VMELMIAAGKAVPNLQLEHGLAVERV-YTGSFMTSLD 237 (512)
Q Consensus 201 s-----~~El~~~~~~~~~~L~~~~gi~v~r~-~~G~~~TSl~ 237 (512)
. .-+..-+++.+...|.++ |+.-+++ .+|.|+|-.|
T Consensus 118 ~~~~~lt~~e~~i~~~i~~~L~~~-Gl~f~GiDvig~~l~EiN 159 (173)
T PF02955_consen 118 AEPAELTEREREICEQIGPKLRED-GLLFVGIDVIGDKLTEIN 159 (173)
T ss_dssp EEEEE--HHHHHHHHHHHHHHHHT-T--EEEEEEETTEEEEEE
T ss_pred eeecCCCHHHHHHHHHHHHHHhhc-CcEEEEEeccccceEEEe
Confidence 4 346667889999999999 9776663 4588877554
No 46
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=27.27 E-value=88 Score=33.34 Aligned_cols=119 Identities=20% Similarity=0.305 Sum_probs=71.2
Q ss_pred HHHHHh-------HHHHcCCCHHHHHHHHHHHHhhhcccceeccccccCCCCCCCCcCCCeeEEeccccCCCCcccccCC
Q 010360 89 VNKIAG-------AAAAAGLSLADVAAEAKRASEMVGTMGVALSVCTLPGQVTSDRLGPGKMELGLGIHGEPGAAVADLQ 161 (512)
Q Consensus 89 v~Ki~G-------A~A~~G~~l~~v~~~~~~~~~~~~t~gval~~c~~P~~~~~~~l~~~e~E~G~GiHgEpG~~~~~~~ 161 (512)
|+||.| .+.++|++=+|+.+-. -.++|| ...+|++++|||-+=||.-|-
T Consensus 10 v~kiFG~~~~~a~~~~~~G~~k~ei~~~t------g~vvGv---------~~~sl~v~~GeIfViMGLSGS--------- 65 (386)
T COG4175 10 VYKIFGKNPKRALKLLDQGKSKAEILKKT------GLVVGV---------NDASLDVEEGEIFVIMGLSGS--------- 65 (386)
T ss_pred ceeecccCHHHHHHHHHcCCcHHHHHHhh------CcEEee---------ccceeeecCCeEEEEEecCCC---------
Confidence 456666 3567899888887532 223333 566899999999999998863
Q ss_pred CHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEcC--CCCChHHHHHHHHHHHHHhhhhhcCCeEEEeeecccccccCCC
Q 010360 162 PVDVVVSHVLKQILSTETNYVPITRGNRVVLMING--LGATPVMELMIAAGKAVPNLQLEHGLAVERVYTGSFMTSLDMA 239 (512)
Q Consensus 162 ~a~~lv~~ml~~ll~~~~~~~~~~~~~~v~vlvNn--lG~ts~~El~~~~~~~~~~L~~~~gi~v~r~~~G~~~TSl~m~ 239 (512)
-+...-+++++|.+++ .| + ++|+| .-..+.-||--+-++-....-+.+++-|+ .|-|+-.
T Consensus 66 -GKSTLvR~~NrLiept-------~G-~--ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPh-------rtVl~Nv 127 (386)
T COG4175 66 -GKSTLVRLLNRLIEPT-------RG-E--ILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPH-------RTVLENV 127 (386)
T ss_pred -CHHHHHHHHhccCCCC-------Cc-e--EEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccc-------hhHhhhh
Confidence 2355556777775542 22 2 33433 33455555555544444444444455554 5566666
Q ss_pred cceEEEeecc
Q 010360 240 GFSISIMKAD 249 (512)
Q Consensus 240 GfSiTll~ld 249 (512)
+|.+.+=-++
T Consensus 128 ~fGLev~Gv~ 137 (386)
T COG4175 128 AFGLEVQGVP 137 (386)
T ss_pred hcceeecCCC
Confidence 7777666666
No 47
>PF01187 MIF: Macrophage migration inhibitory factor (MIF); InterPro: IPR001398 Macrophage migration inhibitory factor (MIF) is a key regulatory cytokine within innate and adaptive immune responses, capable of promoting and modulating the magnitude of the response []. MIF is released from T-cells and macrophages, and acts within the neuroendocrine system. MIF is capable of tautomerase activity, although its biological function has not been fully characterised. It is induced by glucocorticoid and is capable of overriding the anti-inflammatory actions of glucocorticoid []. MIF regulates cytokine secretion and the expression of receptors involved in the immune response. It can be taken up into target cells in order to interact with intracellular signalling molecules, inhibiting p53 function, and/or activating components of the mitogen-activated protein kinase and Jun-activation domain-binding protein-1 (Jab-1) []. MIF has been linked to various inflammatory diseases, such as rheumatoid arthritis and atherosclerosis []. The MIF homologue D-dopachrome tautomerase (4.1.1.84 from EC) is involved in detoxification through the conversion of dopaminechrome (and possibly norepinephrinechrome), the toxic quinine product of the neurotransmitter dopamine (and norepinephrine), to an indole derivative that can serve as a precursor to neuromelanin [, ].; PDB: 1UIZ_C 3FWT_A 1HFO_F 2WKB_D 3RF4_B 2OS5_A 3RF5_A 2XCZ_A 3FWU_A 3B64_A ....
Probab=27.25 E-value=60 Score=28.48 Aligned_cols=40 Identities=15% Similarity=0.238 Sum_probs=32.8
Q ss_pred EEEEcCCCCChHHHHHHHHHHHHHhhhhhcCCeEEEeeec
Q 010360 191 VLMINGLGATPVMELMIAAGKAVPNLQLEHGLAVERVYTG 230 (512)
Q Consensus 191 ~vlvNnlG~ts~~El~~~~~~~~~~L~~~~gi~v~r~~~G 230 (512)
.+=|..+|+.+.-+--.++.++.+.|++++||...|+|+=
T Consensus 58 ~v~l~sig~~~~~~n~~~s~~i~~~l~~~LgIp~~Riyi~ 97 (114)
T PF01187_consen 58 FVELKSIGGLDPEQNKKYSAAITEFLEEELGIPPDRIYIN 97 (114)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHHHHHT--GGGEEEE
T ss_pred EEEEEEccCCCHHHHHHHHHHHHHHHHHHhCCCcCceEEE
Confidence 3448899999887777999999999999999999999973
No 48
>COG3412 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.06 E-value=99 Score=28.33 Aligned_cols=80 Identities=24% Similarity=0.320 Sum_probs=53.6
Q ss_pred CCHHHHHHHHHhccCCCCeEEEeeccccccccHHHHHHHHHhcCCcEEEEEecCcccCCCCCCCCCccccchhhhHHHHH
Q 010360 14 PPVDSILAGIHAVTGPMGCLLIVTNYTGDRLNFGLAAEQAKSEGYKVEIVIVGDDCALPPPRGIAGRRGLAGTILVNKIA 93 (512)
Q Consensus 14 Ps~~~i~~ai~~~~~~~Gvl~iv~NYtGD~lnFg~A~e~a~~~G~~v~~v~v~DDva~~~~~~~~gRRG~aG~v~v~Ki~ 93 (512)
-|+..|.+||...+...++|+.+ ---.-+||-.||.|+...+ +.++..+ .| +|-.+ |.+ .+
T Consensus 44 Ts~~~I~~aI~~~~~ad~~lif~-DlGSA~mn~e~a~El~d~e-i~~~~~~-~d---aPlVE---------Ga~----~A 104 (129)
T COG3412 44 TSFEKIMEAIEKANEADHVLVFY-DLGSAKLNAEMALELLDKE-IAIKNIL-CD---APLVE---------GAY----AA 104 (129)
T ss_pred cCHHHHHHHHHhccccCceEEEE-ecchhhhhHHHHHHHhcch-HHHHhhh-cc---cchhh---------hHH----HH
Confidence 46799999999877777776665 4778899999999998554 5555442 22 22111 111 23
Q ss_pred hHHHHcCCCHHHHHHHHHH
Q 010360 94 GAAAAAGLSLADVAAEAKR 112 (512)
Q Consensus 94 GA~A~~G~~l~~v~~~~~~ 112 (512)
-+.++.|.|++||..-...
T Consensus 105 aa~~~~ga~~~evi~~~~e 123 (129)
T COG3412 105 AALLQGGASIDEVIAEALE 123 (129)
T ss_pred HHHHhcCCCHHHHHHHHHh
Confidence 4566899999888765543
No 49
>PF08353 DUF1727: Domain of unknown function (DUF1727); InterPro: IPR013564 This domain of unknown function is found at the C terminus of bacterial proteins which include UDP-N-acetylmuramyl tripeptide synthase and the related Mur ligase.
Probab=26.04 E-value=77 Score=28.22 Aligned_cols=32 Identities=16% Similarity=0.348 Sum_probs=25.5
Q ss_pred CCCCCCHHHHHHHHHhccCCCCeEEEeecccc
Q 010360 10 VFASPPVDSILAGIHAVTGPMGCLLIVTNYTG 41 (512)
Q Consensus 10 vFaSPs~~~i~~ai~~~~~~~Gvl~iv~NYtG 41 (512)
|...|+.++.++.......+.+.++|+.|||.
T Consensus 81 i~v~~d~~~a~~~~~~~~~~~~~~yil~tYTA 112 (113)
T PF08353_consen 81 IIVEEDLEEALDAFLIKSDPTDKVYILATYTA 112 (113)
T ss_pred eEecCCHHHHHHHHHHhcCCCCcEEEEECCcC
Confidence 55578888888886556777888999999994
No 50
>PF02633 Creatininase: Creatinine amidohydrolase; InterPro: IPR003785 This family includes the enzymes creatininase and 2-amino-5-formylamino-6-ribosylaminopyrimidin-4(3H)-one 5'-monophosphate deformylase, also known as formamide hydrolase. Creatinase or creatinine amidohydrolase (3.5.2.10 from EC) catalyses the hydrolysis of creatinine to creatine, which can then be metabolised to urea and sarcosine by creatinase (3.5.3.3 from EC). Creatininase is a member of the urease-related amidohydrolase superfamily []. Formamide hydrolase catalyzes the hydrolysis of the formamide of 2-amino-5-formylamino-6-ribosylamino-4(3H)-pyrimidinone 5'-monophosphate (FAPy) to form 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate (APy) (3.5.1.102 from EC). ; PDB: 3A6K_F 3A6F_A 3A6D_B 1J2U_B 3A6J_C 1J2T_A 3A6G_C 3A6H_F 1Q3K_E 3A6L_C ....
Probab=25.42 E-value=3e+02 Score=27.16 Aligned_cols=61 Identities=25% Similarity=0.415 Sum_probs=36.9
Q ss_pred CCCCcccccCCCHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEcCCCCChHHHHHHHHHHHHHhhhhh-cCCeEE
Q 010360 151 GEPGAAVADLQPVDVVVSHVLKQILSTETNYVPITRGNRVVLMINGLGATPVMELMIAAGKAVPNLQLE-HGLAVE 225 (512)
Q Consensus 151 gEpG~~~~~~~~a~~lv~~ml~~ll~~~~~~~~~~~~~~v~vlvNnlG~ts~~El~~~~~~~~~~L~~~-~gi~v~ 225 (512)
+=||.-..+..+...++..+++.|... |=+-+|+||+=|| + ....+.+.++|..+ .++.+.
T Consensus 72 ~fpGTisl~~~t~~~~l~di~~sl~~~---------Gf~~ivivngHgG--N---~~~l~~~~~~l~~~~~~~~v~ 133 (237)
T PF02633_consen 72 GFPGTISLSPETLIALLRDILRSLARH---------GFRRIVIVNGHGG--N---IAALEAAARELRQEYPGVKVF 133 (237)
T ss_dssp TSTT-BBB-HHHHHHHHHHHHHHHHHH---------T--EEEEEESSTT--H---HHHHHHHHHHHHHHGCC-EEE
T ss_pred CCCCeEEeCHHHHHHHHHHHHHHHHHc---------CCCEEEEEECCHh--H---HHHHHHHHHHHHhhCCCcEEE
Confidence 458876666666777777777777653 4467999999999 2 22345555555555 466654
No 51
>KOG1526 consensus NADP-dependent isocitrate dehydrogenase [Energy production and conversion]
Probab=25.42 E-value=47 Score=34.78 Aligned_cols=47 Identities=21% Similarity=0.259 Sum_probs=31.0
Q ss_pred HhccCCCCeEEEeeccccccccHHHHHHHHHhcCCcEEEEEecCcccC
Q 010360 24 HAVTGPMGCLLIVTNYTGDRLNFGLAAEQAKSEGYKVEIVIVGDDCAL 71 (512)
Q Consensus 24 ~~~~~~~Gvl~iv~NYtGD~lnFg~A~e~a~~~G~~v~~v~v~DDva~ 71 (512)
.++.+..|-++-+|||.|||..==+ ++--.+-|+=..+++.-|--.+
T Consensus 267 qa~KS~GGfvwAcKNYDGDVqSD~v-AQg~GSLGlMTSVLv~pdGKT~ 313 (422)
T KOG1526|consen 267 QAMKSEGGFVWACKNYDGDVQSDIV-AQGYGSLGLMTSVLVCPDGKTV 313 (422)
T ss_pred HHHhcCCceEEEeecCCCchhhhHH-HhcccchhhheeEEEcCCCCee
Confidence 4456889999999999999976433 3333455665555555554333
No 52
>PF02873 MurB_C: UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain; InterPro: IPR011601 This entry represents a C-terminal conserved region of UDP-N-acetylenolpyruvoylglucosamine reductase 1.1.1.158 from EC, which is also called UDP-N-acetylmuramate dehydrogenase. It is a part of the pathway for the biosynthesis of the UDP-N-acetylmuramoyl-pentapeptide, which is a precursor of bacterial peptidoglycan. ; GO: 0008762 UDP-N-acetylmuramate dehydrogenase activity, 0055114 oxidation-reduction process; PDB: 1MBB_A 2Q85_A 2MBR_A 1UXY_A 1MBT_A 1HSK_A 2GQU_A 2GQT_A 3I99_A 3TX1_A.
Probab=25.07 E-value=96 Score=27.27 Aligned_cols=34 Identities=12% Similarity=0.345 Sum_probs=23.9
Q ss_pred EEEcCCCCChHHHHHHHHHHHHHhhhhhcCCeEEE
Q 010360 192 LMINGLGATPVMELMIAAGKAVPNLQLEHGLAVER 226 (512)
Q Consensus 192 vlvNnlG~ts~~El~~~~~~~~~~L~~~~gi~v~r 226 (512)
+||| .|+.+.-+..-+.+.+.+...++|||....
T Consensus 66 fivN-~g~Ata~dv~~Li~~v~~~V~~~~Gi~Le~ 99 (105)
T PF02873_consen 66 FIVN-HGGATAADVLALIEEVRERVKEKFGIELEP 99 (105)
T ss_dssp EEEE--SS--HHHHHHHHHHHHHHHHHHHS--B-B
T ss_pred eEEE-CCCCCHHHHHHHHHHHHHHHHHHHCCeeee
Confidence 4555 688888899999999999999999987654
No 53
>COG0616 SppA Periplasmic serine proteases (ClpP class) [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=24.76 E-value=2.4e+02 Score=29.44 Aligned_cols=60 Identities=22% Similarity=0.190 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHhcccCCCCCCCCCeEEEEEcCCCCChHHHHHHHHHHHHHhhhhhcCCeEEEeeeccccccc
Q 010360 165 VVVSHVLKQILSTETNYVPITRGNRVVLMINGLGATPVMELMIAAGKAVPNLQLEHGLAVERVYTGSFMTSL 236 (512)
Q Consensus 165 ~lv~~ml~~ll~~~~~~~~~~~~~~v~vlvNnlG~ts~~El~~~~~~~~~~L~~~~gi~v~r~~~G~~~TSl 236 (512)
+.+.+.|+.+..+ ++.+.++|.||.=||+.. .=..+++++. .|.++ + |+.++++.++-|=
T Consensus 83 ~~~~~~l~~~~~~-------~~vk~vvL~inSPGG~v~-as~~i~~~l~-~l~~~-~--PV~v~v~~~AASG 142 (317)
T COG0616 83 DDIEEILRAARAD-------PSVKAVVLRINSPGGSVV-ASELIARALK-RLRAK-K--PVVVSVGGYAASG 142 (317)
T ss_pred HHHHHHHHHHhcC-------CCCceEEEEEECcCCchh-HHHHHHHHHH-HHhhc-C--CEEEEECCeecch
Confidence 4455566666443 345789999999999876 3334444444 44555 5 8889998777663
No 54
>PRK09319 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II/unknown domain fusion protein; Provisional
Probab=24.55 E-value=69 Score=36.23 Aligned_cols=38 Identities=18% Similarity=0.335 Sum_probs=28.2
Q ss_pred ceeccCCCCCCCC---HHHHHHHHHhcc-CCCCeEEEeecccc
Q 010360 3 TAAICGDVFASPP---VDSILAGIHAVT-GPMGCLLIVTNYTG 41 (512)
Q Consensus 3 ~aav~G~vFaSPs---~~~i~~ai~~~~-~~~Gvl~iv~NYtG 41 (512)
+.+..||||-|-- -.|.-+|++.+. .+.|||+.. |..|
T Consensus 261 SeClTGDvfgS~rCDCg~QL~~AL~~Ia~eG~GVlVYL-rqEG 302 (555)
T PRK09319 261 SECLTGDAFGSLRCDCRMQLEAALKMIENEGEGVVVYL-RQEG 302 (555)
T ss_pred ccCcHHHHhcCCCCCCHHHHHHHHHHHHhcCCEEEEEe-CCCC
Confidence 3567899998864 378989999986 556888755 5554
No 55
>TIGR00619 sbcd exonuclease SbcD. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=24.18 E-value=2.9e+02 Score=27.68 Aligned_cols=54 Identities=22% Similarity=0.278 Sum_probs=33.3
Q ss_pred eccCCCCCCCC--HHH---HHHHHHhcc-CC-CCeEEEeecccc-ccccHHHHHHHHHhcCCcE
Q 010360 5 AICGDVFASPP--VDS---ILAGIHAVT-GP-MGCLLIVTNYTG-DRLNFGLAAEQAKSEGYKV 60 (512)
Q Consensus 5 av~G~vFaSPs--~~~---i~~ai~~~~-~~-~Gvl~iv~NYtG-D~lnFg~A~e~a~~~G~~v 60 (512)
.++||+|=... ... +...++.+. .. -.|++|.+|+-- +++++ ..+..+..|+.|
T Consensus 44 li~GDi~d~~~p~~~~~~~~~~~l~~l~~~~~i~v~~i~GNHD~~~~~~~--~~~l~~~~~v~i 105 (253)
T TIGR00619 44 LVAGDVFDTANPPAEAQELFNAFFRNLSDANPIPIVVISGNHDSAQRLSA--AKKLLIELGVFV 105 (253)
T ss_pred EECCccCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEccCCCChhhccc--chhHHHhCCeEE
Confidence 57899998644 322 234454443 23 689999999963 45554 345566666554
No 56
>TIGR01854 lipid_A_lpxH UDP-2,3-diacylglucosamine hydrolase. This model represents LpxH, UDP-2,3-diacylglucosamine hydrolase, and essential enzyme in E. coli that catalyzes the fourth step in lipid A biosynthesis. Note that Pseudomonas aeruginosa has both a member of this family that shares this function and a more distant homolog, designated LpxH2, that does not. Many species that produce lipid A lack an lpxH gene in this family; some of those species have an lpxH2 gene instead, although for which the function is unknown.
Probab=24.03 E-value=97 Score=30.36 Aligned_cols=37 Identities=27% Similarity=0.438 Sum_probs=26.8
Q ss_pred eccCCCCCC------C--CHHHHHHHHHhccC-CCCeEEEeecccc
Q 010360 5 AICGDVFAS------P--PVDSILAGIHAVTG-PMGCLLIVTNYTG 41 (512)
Q Consensus 5 av~G~vFaS------P--s~~~i~~ai~~~~~-~~Gvl~iv~NYtG 41 (512)
.++||+|-. | ...++.+.++.+.. +..|.+|.+|+-.
T Consensus 35 ii~GDi~d~~~~~~~~~~~~~~~~~~l~~L~~~~~~v~~v~GNHD~ 80 (231)
T TIGR01854 35 YILGDLFEAWIGDDDPSTLARSVAQAIRQVSDQGVPCYFMHGNRDF 80 (231)
T ss_pred EEcCceeccccCCCCCCHHHHHHHHHHHHHHHCCCeEEEEcCCCch
Confidence 478999962 2 23567777777653 5789999999963
No 57
>COG1307 DegV Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.96 E-value=6.7e+02 Score=25.79 Aligned_cols=204 Identities=13% Similarity=0.124 Sum_probs=106.2
Q ss_pred CCHHHHHHHHHhccCCC--CeEEEe--eccccccccHHHHHHHHHhcCCcEEEEEecCcccCCCCCCCCCccccchhhhH
Q 010360 14 PPVDSILAGIHAVTGPM--GCLLIV--TNYTGDRLNFGLAAEQAKSEGYKVEIVIVGDDCALPPPRGIAGRRGLAGTILV 89 (512)
Q Consensus 14 Ps~~~i~~ai~~~~~~~--Gvl~iv--~NYtGD~lnFg~A~e~a~~~G~~v~~v~v~DDva~~~~~~~~gRRG~aG~v~v 89 (512)
||+..+.++.+...... .||+|- ..-+| .|.. +..|+...-+.++.+++=.... .|.-+.
T Consensus 64 Ps~~~~~~~~~~l~~~g~~~vi~i~iSs~LSg---ty~~-a~~a~~~~~~~~v~viDS~~~s------------~~~g~~ 127 (282)
T COG1307 64 PSPGEFEELFEKLLQKGYDEVISIHISSGLSG---TYQS-AQLAAELVEGAKVHVIDSKSVS------------MGLGFL 127 (282)
T ss_pred cCHHHHHHHHHHHHhCCCcEEEEEEcCCCccH---HHHH-HHHHHHhccCceEEEEcCcchh------------hHHHHH
Confidence 77788888888876543 465553 22233 3555 4555554333444444332222 233445
Q ss_pred HHHHhHHHHcCCCHHHHHHHHHHHHhhhccccee--ccccccCCCCCCCC-cCCCeeEEeccccCCCCc--ccccCCCHH
Q 010360 90 NKIAGAAAAAGLSLADVAAEAKRASEMVGTMGVA--LSVCTLPGQVTSDR-LGPGKMELGLGIHGEPGA--AVADLQPVD 164 (512)
Q Consensus 90 ~Ki~GA~A~~G~~l~~v~~~~~~~~~~~~t~gva--l~~c~~P~~~~~~~-l~~~e~E~G~GiHgEpG~--~~~~~~~a~ 164 (512)
.+=+..++++|.|++|+.+..+++.+++.+.=+. |+++.-=|+=+... +=-+=.-+=.=+|-|.|. --.+..+..
T Consensus 128 v~~a~~l~~~G~s~~ei~~~l~~~~~~t~~~~~v~~L~~L~kgGRIs~~~a~lg~lL~ikPIl~~~~G~~~~~~K~R~~k 207 (282)
T COG1307 128 VLEAAELAKAGKSFEEILKKLEEIREKTKAYFVVDDLDNLVKGGRISKAAAFLGNLLKIKPILSFEDGELVLLGKVRGQK 207 (282)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhhcEEEEEECchhHHHhCCCcchhHHHHHhhhcceEEEEEeCCEEEEEeecccHH
Confidence 5556789999999999999999999998765332 44444333211000 000000111112333343 235667777
Q ss_pred HHHHHHHHHHHhcccCCCCCCCCCeEEEEEcCCCCChHHHHHHHHHHHHHhhhhhcCCe--EEEeeec-ccccccCCCcc
Q 010360 165 VVVSHVLKQILSTETNYVPITRGNRVVLMINGLGATPVMELMIAAGKAVPNLQLEHGLA--VERVYTG-SFMTSLDMAGF 241 (512)
Q Consensus 165 ~lv~~ml~~ll~~~~~~~~~~~~~~v~vlvNnlG~ts~~El~~~~~~~~~~L~~~~gi~--v~r~~~G-~~~TSl~m~Gf 241 (512)
..++.|++.+.+. .. +.....++++.+-+. | ......+.|.+. ++. +.-...| ...|-.+-..+
T Consensus 208 ka~~~l~~~~~~~----~~-~~~~~~~~~~~~~~~----e---~~~~l~~~l~~~-~~~~~~~~~~~~~vi~~H~G~ga~ 274 (282)
T COG1307 208 KAIKKLIELLKKE----VK-DGAGYRVAVLHGDAP----E---AAEQLKEKLLNK-FIEKDISISELGPVIGTHTGPGAL 274 (282)
T ss_pred HHHHHHHHHHHHH----hc-cCCceEEEEEeCCch----h---HHHHHHHHHHhh-cCCCCceeeccCCEEEEEECCCeE
Confidence 8888888888764 22 222333444444221 2 334444555555 433 3334444 34445666666
Q ss_pred eEEEe
Q 010360 242 SISIM 246 (512)
Q Consensus 242 SiTll 246 (512)
+|.++
T Consensus 275 ~i~~~ 279 (282)
T COG1307 275 GIGVI 279 (282)
T ss_pred EEEEE
Confidence 66654
No 58
>PRK11340 phosphodiesterase YaeI; Provisional
Probab=22.35 E-value=1.7e+02 Score=29.60 Aligned_cols=55 Identities=16% Similarity=0.106 Sum_probs=35.0
Q ss_pred eccCCCCC--CC-CHHHHHHHHHhccCCCCeEEEeecccccc--ccHHHHHHHHHhcCCc
Q 010360 5 AICGDVFA--SP-PVDSILAGIHAVTGPMGCLLIVTNYTGDR--LNFGLAAEQAKSEGYK 59 (512)
Q Consensus 5 av~G~vFa--SP-s~~~i~~ai~~~~~~~Gvl~iv~NYtGD~--lnFg~A~e~a~~~G~~ 59 (512)
.++||++. +| ...++.+.++......+|.+|.+|+--.. -+...-.+..+..|+.
T Consensus 85 li~GD~~d~~~~~~~~~~~~~L~~L~~~~pv~~V~GNHD~~~~~~~~~~~~~~l~~~gi~ 144 (271)
T PRK11340 85 LLGGDYVLFDMPLNFSAFSDVLSPLAECAPTFACFGNHDRPVGTEKNHLIGETLKSAGIT 144 (271)
T ss_pred EEccCcCCCCccccHHHHHHHHHHHhhcCCEEEecCCCCcccCccchHHHHHHHHhcCcE
Confidence 46899987 33 34567677777776678999999995221 1122234555667764
No 59
>PF03408 Foamy_virus_ENV: Foamy virus envelope protein ; InterPro: IPR005070 Expression of the envelope (Env) glycoprotein is essential for viral particle egress. This feature is unique to the Spumavirinae, a subclass of the Retroviridae. ; GO: 0019031 viral envelope
Probab=22.32 E-value=2.4e+02 Score=33.40 Aligned_cols=68 Identities=22% Similarity=0.283 Sum_probs=48.0
Q ss_pred HHHHHHHHHhHHHhhhccCCCCCCchhHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHhcCCchhhHHHHH
Q 010360 312 EAAAEAVVNLRDRLNEWDSKVGDGDCGSTMYRGATAILEDKKKYYPLNDAAETVNEIGASIRRVMGGTSGILYHIF 387 (512)
Q Consensus 312 ~~~~~~li~~e~~Ln~LD~~vGDGD~G~tm~~g~~ai~~~l~~~~~~~~~~~~l~~i~~a~~~~~GGtSG~Ly~~~ 387 (512)
+.+-+.+..++.+|=+||-. .||...=++.-++|-.+-. ...+.++..+|.-+...+||-.|.-||++
T Consensus 881 EsIKdQierakaeLLRLDlH--EGD~p~WikqL~~At~DvW------PaaA~~~~~iGnfL~~ta~giFGtafs~L 948 (981)
T PF03408_consen 881 ESIKDQIERAKAELLRLDLH--EGDYPAWIKQLASATKDVW------PAAASFLSGIGNFLSGTAGGIFGTAFSIL 948 (981)
T ss_pred hhHHHHHHHHHHHHheeecc--cCCcHHHHHHHHHHhhhhh------HHHHHHHHHHHHHhhhccccccchHHHHH
Confidence 45667888899999999964 5677777776666543322 24677899999888777777666655543
No 60
>cd03465 URO-D_like The URO-D _like protein superfamily includes bacterial and eukaryotic uroporphyrinogen decarboxylases (URO-D), coenzyme M methyltransferases and other putative bacterial methyltransferases. Uroporphyrinogen decarboxylase (URO-D) decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, an important branching point of the tetrapyrrole biosynthetic pathway. The methyltransferases represented here are important for ability of methanogenic organisms to use other compounds than carbon dioxide for reduction to methane.
Probab=21.91 E-value=2e+02 Score=29.46 Aligned_cols=106 Identities=21% Similarity=0.167 Sum_probs=61.7
Q ss_pred CCCCHHHHHHHHHhccCCCCeEEEeeccccccccHHHHHHHHHhcCCcEEEEEecCcccCCCCCCCCC-ccccchhhhHH
Q 010360 12 ASPPVDSILAGIHAVTGPMGCLLIVTNYTGDRLNFGLAAEQAKSEGYKVEIVIVGDDCALPPPRGIAG-RRGLAGTILVN 90 (512)
Q Consensus 12 aSPs~~~i~~ai~~~~~~~Gvl~iv~NYtGD~lnFg~A~e~a~~~G~~v~~v~v~DDva~~~~~~~~g-RRG~aG~v~v~ 90 (512)
..|...+|++.++.. +..=++.+.+|++ +. .+....-|++|=.+-...|+.-. ++..| |.-+.|.+=..
T Consensus 206 ~~p~~k~i~~~i~~~-g~~~~lH~cG~~~-~~------~~~l~~~~~d~~~~d~~~dl~~~--~~~~g~~~~i~G~id~~ 275 (330)
T cd03465 206 SLPYLKKVFDAIKAL-GGPVIHHNCGDTA-PI------LELMADLGADVFSIDVTVDLAEA--KKKVGDKACLMGNLDPI 275 (330)
T ss_pred hhHHHHHHHHHHHHc-CCceEEEECCCch-hH------HHHHHHhCCCeEeecccCCHHHH--HHHhCCceEEEeCcChH
Confidence 356778888888764 3344666777765 11 34444456554332222344432 22344 56788888655
Q ss_pred HHHhHHHHcCCCHHHHHHHHHHHHhhhcc--cceecc-ccccCCC
Q 010360 91 KIAGAAAAAGLSLADVAAEAKRASEMVGT--MGVALS-VCTLPGQ 132 (512)
Q Consensus 91 Ki~GA~A~~G~~l~~v~~~~~~~~~~~~t--~gval~-~c~~P~~ 132 (512)
..+ ...+-+||.+..+++.+.+.. =|.-|+ .|.+|-+
T Consensus 276 ~~l-----~~gt~eei~~~v~~~l~~~~~~~~~~il~~gc~i~~~ 315 (330)
T cd03465 276 DVL-----LNGSPEEIKEEVKELLEKLLKGGGGYILSSGCEIPPD 315 (330)
T ss_pred Hhh-----cCCCHHHHHHHHHHHHHHHhCCCCCEEEeCCCCCCCC
Confidence 221 124569999999999988765 344453 3777753
No 61
>COG0336 TrmD tRNA-(guanine-N1)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=21.63 E-value=59 Score=32.72 Aligned_cols=58 Identities=17% Similarity=0.302 Sum_probs=46.9
Q ss_pred HHHHHHHHHhccCCCCeEEEeeccccccccHHHHHHHHHh----------cCCcEEEE--EecCcccCCC
Q 010360 16 VDSILAGIHAVTGPMGCLLIVTNYTGDRLNFGLAAEQAKS----------EGYKVEIV--IVGDDCALPP 73 (512)
Q Consensus 16 ~~~i~~ai~~~~~~~Gvl~iv~NYtGD~lnFg~A~e~a~~----------~G~~v~~v--~v~DDva~~~ 73 (512)
++-|.+||+.+...++..+|+..=.|=.+|=..|.|.|+. |||+=+++ .|++.||+++
T Consensus 64 ~epi~~Al~~~~~~~~~~vi~lsP~G~~f~Q~~a~eLa~~~~lv~iCGrYEGiDeRvi~~~vdeEiSIGD 133 (240)
T COG0336 64 PEPLFDALDSVKAAKKAKVILLSPQGKPFTQARARELAKEEHLVLICGRYEGIDERVIELYVDEEISIGD 133 (240)
T ss_pred cHHHHHHHHHHHhccCCeEEEECCCCCccCHHHHHHHhcCCCEEEEeccccchhHHHHhhccceEEeecc
Confidence 5668899999988778888888999999999999999987 56654443 6777888764
No 62
>PRK07198 hypothetical protein; Validated
Probab=21.19 E-value=1.3e+02 Score=32.64 Aligned_cols=38 Identities=21% Similarity=0.224 Sum_probs=28.0
Q ss_pred ceeccCCCCCCCCH---HH----HHHHHHhccC-CCCeEEEeecccc
Q 010360 3 TAAICGDVFASPPV---DS----ILAGIHAVTG-PMGCLLIVTNYTG 41 (512)
Q Consensus 3 ~aav~G~vFaSPs~---~~----i~~ai~~~~~-~~Gvl~iv~NYtG 41 (512)
+.+..||||-|-.. .| |-.|++.+.. +.|||+.+.+ .|
T Consensus 246 SeC~tgDVFGSlrCDCg~qL~~aLe~Amk~IaeeG~GVLVYLrQ-EG 291 (418)
T PRK07198 246 DECNGSDVFGSDICTCRPYLTHGIEECIRGAQRGGVGLIVYNRK-EG 291 (418)
T ss_pred ccccccccccCCCCCchHHHHHHHHHHHHHHHhcCCeEEEEeCC-CC
Confidence 35678999999865 44 5567777765 8899988865 54
No 63
>PF14552 Tautomerase_2: Tautomerase enzyme; PDB: 2AAG_C 2AAL_A 2AAJ_A 1MWW_C.
Probab=21.00 E-value=87 Score=26.27 Aligned_cols=52 Identities=17% Similarity=0.190 Sum_probs=31.6
Q ss_pred cCCCCCCCCCeEEEE-EcCCCCChHHHHHHHHHHHHHhhhhhcCCeEEEeeec
Q 010360 179 TNYVPITRGNRVVLM-INGLGATPVMELMIAAGKAVPNLQLEHGLAVERVYTG 230 (512)
Q Consensus 179 ~~~~~~~~~~~v~vl-vNnlG~ts~~El~~~~~~~~~~L~~~~gi~v~r~~~G 230 (512)
.+|+..+.+++++++ |.-.-|-|...--.+++.+.+.|+++.||.+..+++-
T Consensus 18 ~~ylg~~Rs~~~v~I~It~~~gRs~e~K~~ly~~l~~~L~~~~gi~p~Dv~I~ 70 (82)
T PF14552_consen 18 PTYLGIDRSDDFVIIQITSGAGRSTEQKKALYRALAERLAEKLGIRPEDVMIV 70 (82)
T ss_dssp TTTS--TS-TT-EEEEEEECS---HHHHHHHHHHHHHHHHHHH---GGGEEEE
T ss_pred CccCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHcCCCHHHEEEE
Confidence 346666667776665 5554477888888999999999998779998887764
No 64
>cd07385 MPP_YkuE_C Bacillus subtilis YkuE and related proteins, C-terminal metallophosphatase domain. YkuE is an uncharacterized Bacillus subtilis protein with a C-terminal metallophosphatase domain and an N-terminal twin-arginine (RR) motif. An RR-signal peptide derived from the Bacillus subtilis YkuE protein can direct Tat-dependent secretion of agarase in Streptomyces lividans. This is an indication that YkuE is transported by the Bacillus subtilis Tat (Twin-arginine translocation) pathway machinery. YkuE belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-dia
Probab=20.76 E-value=2.1e+02 Score=27.20 Aligned_cols=54 Identities=17% Similarity=0.160 Sum_probs=35.8
Q ss_pred eccCCCCCCCCHH--HHHHHHHhccCCCCeEEEeeccccccccHHHHHHHHHhcCC
Q 010360 5 AICGDVFASPPVD--SILAGIHAVTGPMGCLLIVTNYTGDRLNFGLAAEQAKSEGY 58 (512)
Q Consensus 5 av~G~vFaSPs~~--~i~~ai~~~~~~~Gvl~iv~NYtGD~lnFg~A~e~a~~~G~ 58 (512)
.++||+|...... .+.+.++......++.++.+|+-=..-+...-.+..+..|+
T Consensus 37 l~~GD~~~~~~~~~~~~~~~l~~l~~~~~v~~v~GNHD~~~~~~~~~~~~l~~~~v 92 (223)
T cd07385 37 VLTGDLVDGSVDVLELLLELLKKLKAPLGVYAVLGNHDYYSGDEENWIEALESAGI 92 (223)
T ss_pred EEcCcccCCcchhhHHHHHHHhccCCCCCEEEECCCcccccCchHHHHHHHHHcCC
Confidence 4689999876554 56666777767788999999986444333332445555564
No 65
>TIGR02326 transamin_PhnW 2-aminoethylphosphonate--pyruvate transaminase. Members of this family are 2-aminoethylphosphonate--pyruvate transaminase. This enzyme acts on the most common type of naturally occurring phosphonate. It interconverts 2-aminoethylphosphonate plus pyruvate with 2-phosphonoacetaldehyde plus alanine. The enzyme phosphonoacetaldehyde hydrolase (EC 3.11.1.1), usually encoded by an adjacent gene, then cleaves the C-P bond of phosphonoacetaldehyde, adding water to yield acetaldehyde plus inorganic phosphate. Species with this pathway generally have an identified phosphonate ABC transporter but do not also have the multisubunit C-P lysase complex as found in Escherichia coli.
Probab=20.74 E-value=2.6e+02 Score=28.78 Aligned_cols=53 Identities=23% Similarity=0.247 Sum_probs=35.4
Q ss_pred CCCCCCHHHHHHHHHhccCCCCeEEEeeccccccccHHHH-HHHHHhcCCcEEEEEecC
Q 010360 10 VFASPPVDSILAGIHAVTGPMGCLLIVTNYTGDRLNFGLA-AEQAKSEGYKVEIVIVGD 67 (512)
Q Consensus 10 vFaSPs~~~i~~ai~~~~~~~Gvl~iv~NYtGD~lnFg~A-~e~a~~~G~~v~~v~v~D 67 (512)
+|++..+..+..++...-..+|..+++.|. .|+.. ...++..|+++..|-+.+
T Consensus 58 ~~t~~~t~al~~~~~~l~~~~~~vlv~~~~-----~~~~~~~~~a~~~g~~~~~v~~~~ 111 (363)
T TIGR02326 58 LLQGSGTFAVEAVIGSAVPKDGKLLVVING-----AYGARIVQIAEYLGIPHHVVDTGE 111 (363)
T ss_pred EEcCCCHHHHHHHHHhcCCCCCeEEEEeCC-----hhhHHHHHHHHHcCCceEEEeCCC
Confidence 478888888888887776666655554431 44443 355677898888876543
No 66
>COG1105 FruK Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) [Carbohydrate transport and metabolism]
Probab=20.66 E-value=3.9e+02 Score=28.15 Aligned_cols=127 Identities=14% Similarity=0.205 Sum_probs=80.4
Q ss_pred HHHhhhcccceeccccccCC-CCCCCCcCCC----eeEEeccccCCCCcccccCCCHHHHHHHHHHHHHhcccCCCCCCC
Q 010360 112 RASEMVGTMGVALSVCTLPG-QVTSDRLGPG----KMELGLGIHGEPGAAVADLQPVDVVVSHVLKQILSTETNYVPITR 186 (512)
Q Consensus 112 ~~~~~~~t~gval~~c~~P~-~~~~~~l~~~----e~E~G~GiHgEpG~~~~~~~~a~~lv~~ml~~ll~~~~~~~~~~~ 186 (512)
.+.+.++..|+-..-+.++| .+.++.+-++ |-|| ++||-.. + ++=.+++++++... +.+
T Consensus 66 ~~~~~l~~~gi~~~fv~v~g~TRinvki~~~~~~~~Tei-----n~~Gp~i----s-~~~~~~~l~~~~~~------l~~ 129 (310)
T COG1105 66 FFVALLKDEGIPDAFVEVKGDTRINVKILDEEDGEETEI-----NFPGPEI----S-EAELEQFLEQLKAL------LES 129 (310)
T ss_pred HHHHHHHhcCCCceEEEccCCCeeeEEEEecCCCcEEEe-----cCCCCCC----C-HHHHHHHHHHHHHh------ccc
Confidence 34455677788888888888 4555655333 3443 4555322 2 23346666666431 333
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHHHHhhhhhcCCeEEEeeecccc-cccCCCcceEEEeecc-HHHHHhhcCcCCC
Q 010360 187 GNRVVLMINGLGATPVMELMIAAGKAVPNLQLEHGLAVERVYTGSFM-TSLDMAGFSISIMKAD-EVILKHLDATTKA 262 (512)
Q Consensus 187 ~~~v~vlvNnlG~ts~~El~~~~~~~~~~L~~~~gi~v~r~~~G~~~-TSl~m~GfSiTll~ld-~~~~~~ldap~~a 262 (512)
. .++| ++ |+.|+-=-.-.|.++.+.+.++ |.++.---.|..+ .+|+++ -.|+|-+ +|+..++..|-..
T Consensus 130 ~-d~Vv-ls--GSlP~g~~~d~y~~li~~~~~~-g~~vilD~Sg~~L~~~L~~~---P~lIKPN~~EL~~~~g~~~~~ 199 (310)
T COG1105 130 D-DIVV-LS--GSLPPGVPPDAYAELIRILRQQ-GAKVILDTSGEALLAALEAK---PWLIKPNREELEALFGRELTT 199 (310)
T ss_pred C-CEEE-Ee--CCCCCCCCHHHHHHHHHHHHhc-CCeEEEECChHHHHHHHccC---CcEEecCHHHHHHHhCCCCCC
Confidence 3 4544 33 4455544446788899999888 9999877778666 588888 7788776 6777777776543
Done!