Query 010361
Match_columns 512
No_of_seqs 186 out of 501
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 05:08:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010361.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010361hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3o7q_A L-fucose-proton symport 99.6 1.8E-12 6.2E-17 132.7 32.6 286 147-474 26-337 (438)
2 1pw4_A Glycerol-3-phosphate tr 99.5 7E-13 2.4E-17 136.0 23.8 296 147-470 28-328 (451)
3 2gfp_A EMRD, multidrug resista 99.3 2.9E-12 9.8E-17 129.2 11.0 261 150-461 3-264 (375)
4 4aps_A DI-OR tripeptide H+ sym 99.3 1.2E-09 4E-14 114.0 31.0 161 145-324 11-178 (491)
5 2cfq_A Lactose permease; trans 98.8 1.4E-08 4.7E-13 105.0 9.9 77 145-221 5-82 (417)
6 2xut_A Proton/peptide symporte 98.6 1.5E-06 5.2E-11 91.3 19.3 162 145-323 10-179 (524)
7 1pw4_A Glycerol-3-phosphate tr 98.0 0.00018 6.1E-09 73.2 18.6 161 145-323 250-414 (451)
8 4gc0_A D-xylose-proton symport 98.0 0.0026 8.8E-08 65.7 26.2 53 426-478 306-358 (491)
9 3o7q_A L-fucose-proton symport 97.4 0.0034 1.2E-07 63.5 16.4 155 145-324 256-414 (438)
10 2cfq_A Lactose permease; trans 95.6 0.023 7.9E-07 58.1 8.0 80 392-471 2-82 (417)
11 4aps_A DI-OR tripeptide H+ sym 95.6 0.014 4.6E-07 60.4 6.1 162 149-318 285-448 (491)
12 2gfp_A EMRD, multidrug resista 94.7 0.011 3.8E-07 58.8 2.3 157 145-320 197-354 (375)
13 4gc0_A D-xylose-proton symport 91.9 5.1 0.00018 40.7 17.0 122 180-317 310-431 (491)
14 2xut_A Proton/peptide symporte 91.6 0.83 2.9E-05 47.3 10.7 58 416-473 31-96 (524)
15 2kv5_A FST, putative uncharact 27.9 25 0.00085 23.7 1.4 19 301-319 3-21 (33)
No 1
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.60 E-value=1.8e-12 Score=132.68 Aligned_cols=286 Identities=11% Similarity=0.006 Sum_probs=182.9
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHccccceeeecccCChhHHHHHHHHHHHHH
Q 010361 147 EGLYALYACCLAGNLVEQLWNFAWPSAIALLHPSLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQAAAQ 226 (512)
Q Consensus 147 r~f~~L~~g~~lS~~Gdri~~FAlpL~~~~l~~Sll~vav~~~~~~Lp~ll~gp~aG~lvDR~~Rr~vmi~~dlvq~~~v 226 (512)
+.+..++...++..+...+....+|.+.....-|..+++....+..+..++.+++.|.+.||++||++++.+.++..+.
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~- 104 (438)
T 3o7q_A 26 IPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALG- 104 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHH-
Confidence 3455566777777777788888888865554339999999999999999999999999999999999999888764332
Q ss_pred HHHHHHHHHHHhhcccCCCchhHHHHHHHHHHHHHHHHHhHhhhhhhcccceeEecCCCchhHHHHHHHHHHHHHHHHHH
Q 010361 227 LLSAAMIIHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDLLCEI 306 (512)
Q Consensus 227 ~ls~~li~~~~~~~~~~~~~l~~~l~~v~~llg~i~~l~sva~~iaverdWVp~Lv~~~~~~~L~~aNs~l~~Idl~~ki 306 (512)
..+.... ... .+ .+.+++..++.|.......++....+ .+ ..+++ +..++++..+....++.+
T Consensus 105 ---~~~~~~~-~~~---~~--~~~l~~~~~l~G~~~~~~~~~~~~~~-~~----~~~~~---~r~~~~~~~~~~~~~g~~ 167 (438)
T 3o7q_A 105 ---AALFWPA-AEI---MN--YTLFLVGLFIIAAGLGCLETAANPFV-TV----LGPES---SGHFRLNLAQTFNSFGAI 167 (438)
T ss_dssp ---HHHHHHH-HHT---TC--HHHHHHHHHHHHHHHHHHHHHHHHHH-HH----SSCST---THHHHHHHHHHHHHHHHH
T ss_pred ---HHHHHhc-ccc---cc--HHHHHHHHHHHHhhHHHhhhhHHHHH-HH----HcCch---hHHHHHHHHHHHHHHHHH
Confidence 1111010 111 12 23344555566766666665554433 34 34443 688889999999999999
Q ss_pred HhHHHHHHHH-hhcchh-----------------------hHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccc
Q 010361 307 AGASLFGILL-SKYEPV-----------------------TCLKFAAGLIMWSLPVMIILTWFTNKISSGVLDRAKCSQS 362 (512)
Q Consensus 307 lGP~lgGlL~-s~~s~~-----------------------~~i~~~~~~~~~s~~s~~ll~~~i~rv~~~~l~~~~~~~~ 362 (512)
+||.++|.+. ...+.. ....+. ......+...+ .......|+.+ ++.
T Consensus 168 ~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~-~~~~~~~~~~~----~~~~~~~p~~~--~~~-- 238 (438)
T 3o7q_A 168 IAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYM-IIVAIVLLVAL----LIMLTKFPALQ--SDN-- 238 (438)
T ss_dssp HHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH----HHHHCCCCCCT--TTC--
T ss_pred HHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHH-HHHHHHHHHHH----HHHHHcCCccc--ccc--
Confidence 9999999998 544320 001110 00111111111 11111112111 000
Q ss_pred cCCCCCCCCCCCCcchhHHhHHHHHHhHhhhhcCcchhHHHHHHHHHHHhhhhhhHHHHHH-HHHh-CCCcchhHHHHHH
Q 010361 363 CCRTSNEGPVPDADNIVDVGIEAIKLGWKEYMQQPVLPASLAYVLLCLNVVLTPGSLMTAF-LTQR-GLNPSIIGGFSGL 440 (512)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~i~eG~~~y~~qpvl~asla~alL~~tvll~~~~l~v~y-l~~l-Gls~~~iG~~~g~ 440 (512)
+++++ + ++.++.++..+++|.++..+...++++.....+...++.| +++. |+++...|.+.+.
T Consensus 239 -------~~~~~-~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 303 (438)
T 3o7q_A 239 -------HSDAK-Q-------GSFSASLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTG 303 (438)
T ss_dssp -------CCCSS-T-------TSHHHHHHHHTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHH
T ss_pred -------ccccc-c-------cchhhhHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHH
Confidence 00000 0 1124566778889877776554444443323455667778 7764 9999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHH
Q 010361 441 CASMGVAATFLSAYLVRRLGILKAGAAGLIFQAS 474 (512)
Q Consensus 441 gavgGLlGt~lap~L~rRlG~~ragl~~l~~Q~~ 474 (512)
..+++++|.++.+++.+|+|..+...++.....+
T Consensus 304 ~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~ 337 (438)
T 3o7q_A 304 TMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMA 337 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 9999999999999999999999887776654433
No 2
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.54 E-value=7e-13 Score=136.01 Aligned_cols=296 Identities=13% Similarity=-0.012 Sum_probs=181.4
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHccccceeeecccCChhHHHHHHHHHHHHH
Q 010361 147 EGLYALYACCLAGNLVEQLWNFAWPSAIALLHPSLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQAAAQ 226 (512)
Q Consensus 147 r~f~~L~~g~~lS~~Gdri~~FAlpL~~~~l~~Sll~vav~~~~~~Lp~ll~gp~aG~lvDR~~Rr~vmi~~dlvq~~~v 226 (512)
+.+..++.+.++..++..++...+|.+..+. -+...++....+..+..++.+++.|.+.||++||++++.+.++..+.
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~- 105 (451)
T 1pw4_A 28 QIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAV- 105 (451)
T ss_dssp HHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHHHH-
Confidence 4566678888888888888889999888777 77777899999999999999999999999999999999988765432
Q ss_pred HHHHHHHHHHHhhcccCCCchhHHHHHHHHHHHHHHHHHhHhhhhhhcccceeEecCCCchhHHHHHHHHHHHHHHHHHH
Q 010361 227 LLSAAMIIHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDLLCEI 306 (512)
Q Consensus 227 ~ls~~li~~~~~~~~~~~~~l~~~l~~v~~llg~i~~l~sva~~iaverdWVp~Lv~~~~~~~L~~aNs~l~~Idl~~ki 306 (512)
..+..+..... .+ .+.+++.-++.|.......++....+ .| ..++ ++..++++..+....++.+
T Consensus 106 ---~~~~~~~~~~~---~~--~~~l~~~~~l~G~~~~~~~~~~~~~i-~~----~~~~---~~r~~~~~~~~~~~~~g~~ 169 (451)
T 1pw4_A 106 ---MLFMGFVPWAT---SS--IAVMFVLLFLCGWFQGMGWPPCGRTM-VH----WWSQ---KERGGIVSVWNCAHNVGGG 169 (451)
T ss_dssp ---HHHHHHCHHHH---SS--SSHHHHHHHHHHHHHHHTHHHHHHHH-HT----TCTT---THHHHHHHHHHHHHHHHHT
T ss_pred ---HHHHHhhhhcc---cc--HHHHHHHHHHHHHHhhhccchHHHHH-HH----HCCc---hhhhHHHHHHHHHHHHHHH
Confidence 11111100001 11 12344445566666666655555433 23 4444 3789999999999999999
Q ss_pred HhHHHHHHHHhhcc-hhhHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccCCCCCCCCCCCCcchhHHhHHH
Q 010361 307 AGASLFGILLSKYE-PVTCLKFAAGLIMWSLPVMIILTWFTNKISSGVLDRAKCSQSCCRTSNEGPVPDADNIVDVGIEA 385 (512)
Q Consensus 307 lGP~lgGlL~s~~s-~~~~i~~~~~~~~~s~~s~~ll~~~i~rv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (512)
+||.++|.++...+ ......+.....+. ..++ ....+ ++.++.++.+ ..++ .++..++..+........
T Consensus 170 ~g~~~~~~l~~~~g~w~~~f~~~~~~~~~---~~~~---~~~~~--~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~ 239 (451)
T 1pw4_A 170 IPPLLFLLGMAWFNDWHAALYMPAFCAIL---VALF---AFAMM--RDTPQSCGLP-PIEE-YKNDYPDDYNEKAEQELT 239 (451)
T ss_dssp SHHHHHHHHHHHTCCSTTCTHHHHHHHHH---HHHH---HHHHC--CCSSTTTCCC-SCTT-TCCC-------------C
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHH---HHHH---HHhhc--cCCHhhcCCC-Chhh-hcccccccchhhhhcccc
Confidence 99999999888776 44433332221111 1111 11111 1111110000 0000 000000000000000000
Q ss_pred HHHh-HhhhhcCcchhHHHHHHHHHHHhhhhhhHHHHHHHHH-hCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhh--Ch
Q 010361 386 IKLG-WKEYMQQPVLPASLAYVLLCLNVVLTPGSLMTAFLTQ-RGLNPSIIGGFSGLCASMGVAATFLSAYLVRRL--GI 461 (512)
Q Consensus 386 i~eG-~~~y~~qpvl~asla~alL~~tvll~~~~l~v~yl~~-lGls~~~iG~~~g~gavgGLlGt~lap~L~rRl--G~ 461 (512)
.++- ++..+++|.++..+...+++......+....+.|+++ .|+++...|++.+..++++++|.++.+++.+|+ |.
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~ 319 (451)
T 1pw4_A 240 AKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGN 319 (451)
T ss_dssp CTHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTC
T ss_pred cccchHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 1111 4566788876665444333332213455567777776 799999999999999999999999999999999 88
Q ss_pred hhHHHHHHH
Q 010361 462 LKAGAAGLI 470 (512)
Q Consensus 462 ~ragl~~l~ 470 (512)
.+...++..
T Consensus 320 ~~~~~~~~~ 328 (451)
T 1pw4_A 320 RGATGVFFM 328 (451)
T ss_dssp HHHHHHHHH
T ss_pred chhHHHHHH
Confidence 776655443
No 3
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.34 E-value=2.9e-12 Score=129.20 Aligned_cols=261 Identities=15% Similarity=0.092 Sum_probs=166.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHccccceeeecccCChhHHHHHHHHHHHHHHHH
Q 010361 150 YALYACCLAGNLVEQLWNFAWPSAIALLHPSLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQAAAQLLS 229 (512)
Q Consensus 150 ~~L~~g~~lS~~Gdri~~FAlpL~~~~l~~Sll~vav~~~~~~Lp~ll~gp~aG~lvDR~~Rr~vmi~~dlvq~~~v~ls 229 (512)
..++.+.+++.++..++...+|.+..+..-+...++....+..+..++.+++.|.+.||++||+++..+.++..+.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~---- 78 (375)
T 2gfp_A 3 LMLVLLVAVGQMAQTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLA---- 78 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHH----
Confidence 3567889999999999999999876554448889999999999999999999999999999999999888765432
Q ss_pred HHHHHHHHhhcccCCCchhHHHHHHHHHHHHHHHHHhHhhhhhhcccceeEecCCCchhHHHHHHHHHHHHHHHHHHHhH
Q 010361 230 AAMIIHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDLLCEIAGA 309 (512)
Q Consensus 230 ~~li~~~~~~~~~~~~~l~~~l~~v~~llg~i~~l~sva~~iaverdWVp~Lv~~~~~~~L~~aNs~l~~Idl~~kilGP 309 (512)
..+..+. . + .+.+++..++.|.......+.....+ .| ..+++ +..++++..+....++.++||
T Consensus 79 ~~~~~~~---~----~--~~~l~~~~~l~g~~~~~~~~~~~~~~-~~----~~~~~---~~~~~~~~~~~~~~~g~~~~~ 141 (375)
T 2gfp_A 79 TLVAVTT---S----S--LTVLIAASAMQGMGTGVGGVMARTLP-RD----LYERT---QLRHANSLLNMGILVSPLLAP 141 (375)
T ss_dssp HHHHHHH---H----H--HHHHHHHHHHHHHHHHHHHHHHHHHH-HH----HHHTS---SCCSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHh---c----c--HHHHHHHHHHHHHHHHhhhhhHHHHH-HH----HCCHH---HHHHHHHHHHHHHHHHHHhhH
Confidence 1111111 1 1 12334444555666665555554433 23 33332 577899999999999999999
Q ss_pred HHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccCCCCCCCCCCCCcchhHHhHHHHHHh
Q 010361 310 SLFGILLSKYEPVTCLKFAAGLIMWSLPVMIILTWFTNKISSGVLDRAKCSQSCCRTSNEGPVPDADNIVDVGIEAIKLG 389 (512)
Q Consensus 310 ~lgGlL~s~~s~~~~i~~~~~~~~~s~~s~~ll~~~i~rv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~eG 389 (512)
.++|.+....+......+... ..+... .... ...|+. ++.+ +++++ .+++
T Consensus 142 ~~~~~l~~~~~~~~~~~~~~~---~~~~~~----~~~~-~~~~~~---~~~~--------~~~~~-----------~~~~ 191 (375)
T 2gfp_A 142 LIGGLLDTMWNWRACYLFLLV---LCAGVT----FSMA-RWMPET---RPVD--------APRTR-----------LLTS 191 (375)
T ss_dssp HHHHHSSCHHHHHHHHHHHHH---HHHHHH----CCCC-CSSCCC---STTT--------CCCCC-----------TTTC
T ss_pred HHHHHHHHhccHHHHHHHHHH---HHHHHH----HHHH-HHCccc---CCCC--------ccccc-----------HHHH
Confidence 999999876543222211111 111100 0001 011111 1000 00000 1234
Q ss_pred HhhhhcCcchhHHHHHHHHHHHhhhhhhHHHHHHHHH-hCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhhCh
Q 010361 390 WKEYMQQPVLPASLAYVLLCLNVVLTPGSLMTAFLTQ-RGLNPSIIGGFSGLCASMGVAATFLSAYLVRRLGI 461 (512)
Q Consensus 390 ~~~y~~qpvl~asla~alL~~tvll~~~~l~v~yl~~-lGls~~~iG~~~g~gavgGLlGt~lap~L~rRlG~ 461 (512)
++..+++|.++......+++......+....+.|+++ .|+++...|.+.+..++++++|.++.+++.+|.|.
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~ 264 (375)
T 2gfp_A 192 YKTLFGNSGFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFST 264 (375)
T ss_dssp STHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHH
T ss_pred HHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556666765554333333222212333444556665 79999999999999999999999999999999886
No 4
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.34 E-value=1.2e-09 Score=114.05 Aligned_cols=161 Identities=11% Similarity=-0.015 Sum_probs=118.4
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----cC-ChhHHHHHHHHHHHHHHHccccceeeecc-cCChhHHHH
Q 010361 145 HPEGLYALYACCLAGNLVEQLWNFAWPSAIALL-----HP-SLLPVAVMGFFSKLILIVGGPLVGKLMDH-SPRIPAYIC 217 (512)
Q Consensus 145 ~~r~f~~L~~g~~lS~~Gdri~~FAlpL~~~~l-----~~-Sll~vav~~~~~~Lp~ll~gp~aG~lvDR-~~Rr~vmi~ 217 (512)
|++.++.++...++..++-.....-+|.|+... ++ |...++.......+..++..++.|.+.|| ++||+++..
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~ 90 (491)
T 4aps_A 11 QPLGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFW 90 (491)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHH
Confidence 567889999999999999998888899999887 77 99999999999999999999999999999 899999988
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccCCCchhHHHHHHHHHHHHHHHHHhHhhhhhhcccceeEecCCCchhHHHHHHHHH
Q 010361 218 LNTVQAAAQLLSAAMIIHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVL 297 (512)
Q Consensus 218 ~dlvq~~~v~ls~~li~~~~~~~~~~~~~l~~~l~~v~~llg~i~~l~sva~~iaverdWVp~Lv~~~~~~~L~~aNs~l 297 (512)
+.++..+. .+... .. .+ .+.+++..++.|.......+.....+ .|| .++++ .....+.+..
T Consensus 91 ~~~~~~~~------~~~~~--~~---~~--~~~~~~~~~l~g~~~~~~~~~~~~~~-~~~----~~~~~-~~r~~~~~~~ 151 (491)
T 4aps_A 91 GGVLIMLG------HIVLA--LP---FG--ASALFGSIILIIIGTGFLKPNVSTLV-GTL----YDEHD-RRRDAGFSIF 151 (491)
T ss_dssp HHHHHHHH------HHHHH--SC---CS--TTHHHHHHHHHHHHHHHHHHHHHHHH-HHH----SSSCT-THHHHHHHHH
T ss_pred HHHHHHHH------HHHHH--Hh---hh--HHHHHHHHHHHHHHHHhccchHHHHH-HHH----cCccc-ccceeeehHH
Confidence 87654321 11121 11 12 12344445556665555555544333 343 33321 2467788888
Q ss_pred HHHHHHHHHHhHHHHHHHHhhcchhhH
Q 010361 298 NRIDLLCEIAGASLFGILLSKYEPVTC 324 (512)
Q Consensus 298 ~~Idl~~kilGP~lgGlL~s~~s~~~~ 324 (512)
.....++.++||.++|.+....+....
T Consensus 152 ~~~~~~g~~~~~~~~~~l~~~~g~~~~ 178 (491)
T 4aps_A 152 VFGINLGAFIAPLIVGAAQEAAGYHVA 178 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 889999999999999999987765443
No 5
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=98.78 E-value=1.4e-08 Score=105.00 Aligned_cols=77 Identities=12% Similarity=0.015 Sum_probs=64.6
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-ChhHHHHHHHHHHHHHHHccccceeeecccCChhHHHHHHHH
Q 010361 145 HPEGLYALYACCLAGNLVEQLWNFAWPSAIALLHP-SLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTV 221 (512)
Q Consensus 145 ~~r~f~~L~~g~~lS~~Gdri~~FAlpL~~~~l~~-Sll~vav~~~~~~Lp~ll~gp~aG~lvDR~~Rr~vmi~~dlv 221 (512)
++|+++.+....++...+-.+...-+|+++....+ |..+++.......+..++.+|+.|.+.||++|||++...-++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~ 82 (417)
T 2cfq_A 5 KNTNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITG 82 (417)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence 67788888888888777777766678888877667 888888888888999999999999999999999998876543
No 6
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=98.61 E-value=1.5e-06 Score=91.34 Aligned_cols=162 Identities=9% Similarity=-0.075 Sum_probs=110.0
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-------ChhHHHHHHHHHHHHHHHccccceeeeccc-CChhHHH
Q 010361 145 HPEGLYALYACCLAGNLVEQLWNFAWPSAIALLHP-------SLLPVAVMGFFSKLILIVGGPLVGKLMDHS-PRIPAYI 216 (512)
Q Consensus 145 ~~r~f~~L~~g~~lS~~Gdri~~FAlpL~~~~l~~-------Sll~vav~~~~~~Lp~ll~gp~aG~lvDR~-~Rr~vmi 216 (512)
+++.++.++...++..++.......+|.++...++ |...++.......+..++..+++|.+.||+ +||+++.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~ 89 (524)
T 2xut_A 10 WPRQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTIL 89 (524)
T ss_dssp ---CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHH
Confidence 56789999999999999999888889998876544 777888888889999999999999999999 9999988
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccCCCchhHHHHHHHHHHHHHHHHHhHhhhhhhcccceeEecCCCchhHHHHHHHH
Q 010361 217 CLNTVQAAAQLLSAAMIIHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAV 296 (512)
Q Consensus 217 ~~dlvq~~~v~ls~~li~~~~~~~~~~~~~l~~~l~~v~~llg~i~~l~sva~~iaverdWVp~Lv~~~~~~~L~~aNs~ 296 (512)
.+.++..+. .+.... .. .+ .+.+++..++.|.......+.....+ .|| .++++........+.
T Consensus 90 ~~~~~~~~~------~~~~~~-~~---~~--~~~~~~~~~l~g~~~~~~~~~~~~~~-~~~----~~~~~r~~~~~~~~~ 152 (524)
T 2xut_A 90 WLSLIYCVG------HAFLAI-FE---HS--VQGFYTGLFLIALGSGGIKPLVSSFM-GDQ----FDQSNKSLAQKAFDM 152 (524)
T ss_dssp HHHHHHHHH------HHHHHH-TS---SC--HHHHHHHHHHHHHHHHTTHHHHHHHH-HHT----CSTTTTTHHHHHHHH
T ss_pred HHHHHHHHH------HHHHHH-hc---cc--HHHHHHHHHHHHHhccccchhHHHHH-HHH----cCccchHHHHHHHHH
Confidence 876553221 111111 11 01 23344555566666666555544433 343 333211123445555
Q ss_pred HHHHHHHHHHHhHHHHHHHHhhcchhh
Q 010361 297 LNRIDLLCEIAGASLFGILLSKYEPVT 323 (512)
Q Consensus 297 l~~Idl~~kilGP~lgGlL~s~~s~~~ 323 (512)
......+..++||.++|.+....+...
T Consensus 153 ~~~~~~~g~~~g~~~~~~l~~~~g~~~ 179 (524)
T 2xut_A 153 FYFTINFGSFFASLSMPLLLKNFGAAV 179 (524)
T ss_dssp HHHHHHHHHHHHHHTSTHHHHTSCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhccccHHH
Confidence 778888889999999999988666433
No 7
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=98.04 E-value=0.00018 Score=73.25 Aligned_cols=161 Identities=14% Similarity=0.041 Sum_probs=110.9
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-ChhHHHHHHHHHHHHHHHccccceeeeccc--CChhHHHHHHHH
Q 010361 145 HPEGLYALYACCLAGNLVEQLWNFAWPSAIALLHP-SLLPVAVMGFFSKLILIVGGPLVGKLMDHS--PRIPAYICLNTV 221 (512)
Q Consensus 145 ~~r~f~~L~~g~~lS~~Gdri~~FAlpL~~~~l~~-Sll~vav~~~~~~Lp~ll~gp~aG~lvDR~--~Rr~vmi~~dlv 221 (512)
+++.++.+....++..++......-+|.++....+ +....+.+.....+..++..+..|.+.||+ +||+.+...-++
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~ 329 (451)
T 1pw4_A 250 PNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMT 329 (451)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHH
Confidence 67889999999999999998888889999888777 888889988888999999999999999999 888887665433
Q ss_pred HHHHHHHHHHHHHHHHhhcccCCCchhHHHHHHHHHHHHHHHHHhHhhhhhhcccceeEecCCCchhHHHHHHHHHHHHH
Q 010361 222 QAAAQLLSAAMIIHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRID 301 (512)
Q Consensus 222 q~~~v~ls~~li~~~~~~~~~~~~~l~~~l~~v~~llg~i~~l~sva~~iaverdWVp~Lv~~~~~~~L~~aNs~l~~Id 301 (512)
..+ +.++.+ .... ..+ .+..++..++.|.............+ ...+++ ++..++++....+.
T Consensus 330 ~~~-----~~~~~~--~~~~-~~~--~~~~~~~~~~~g~~~~~~~~~~~~~~-----~~~~~~---~~~g~~~~~~~~~~ 391 (451)
T 1pw4_A 330 LVT-----IATIVY--WMNP-AGN--PTVDMICMIVIGFLIYGPVMLIGLHA-----LELAPK---KAAGTAAGFTGLFG 391 (451)
T ss_dssp HHH-----HHHHHT--TSCC-TTC--HHHHHHHHHHHHHHHTHHHHHHHHHH-----HHTSCT---THHHHHHHHHHHHH
T ss_pred HHH-----HHHHHH--HHhc-ccC--HHHHHHHHHHHHHHHhchHHHHHHHH-----HHHhch---hhhhhHHHHHHHHH
Confidence 211 111111 1111 011 12223333344443223222222212 124554 37899999999999
Q ss_pred HH-HHHHhHHHHHHHHhhcchhh
Q 010361 302 LL-CEIAGASLFGILLSKYEPVT 323 (512)
Q Consensus 302 l~-~kilGP~lgGlL~s~~s~~~ 323 (512)
.+ +..+||.++|.+....+...
T Consensus 392 ~~~g~~~~~~~~g~l~~~~g~~~ 414 (451)
T 1pw4_A 392 YLGGSVAASAIVGYTVDFFGWDG 414 (451)
T ss_dssp HHHHHHHHHHHHHHHHHSSCSHH
T ss_pred HHHHHHHHHHHHHHHHHhcCcHH
Confidence 99 99999999999999877544
No 8
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=97.98 E-value=0.0026 Score=65.75 Aligned_cols=53 Identities=15% Similarity=0.046 Sum_probs=44.1
Q ss_pred HhCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHHHH
Q 010361 426 QRGLNPSIIGGFSGLCASMGVAATFLSAYLVRRLGILKAGAAGLIFQASLLAM 478 (512)
Q Consensus 426 ~lGls~~~iG~~~g~gavgGLlGt~lap~L~rRlG~~ragl~~l~~Q~~~L~~ 478 (512)
..+.+...........++.++.+++++.++.+|+|..+....+.....+++..
T Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~ 358 (491)
T 4gc0_A 306 TLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFS 358 (491)
T ss_dssp HSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH
T ss_pred hcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHH
Confidence 56888888888888888999999999999999999999888777766665543
No 9
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=97.41 E-value=0.0034 Score=63.53 Aligned_cols=155 Identities=8% Similarity=-0.078 Sum_probs=101.1
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHH-HHHHcC-ChhHHHHHHHHHHHHHHHccccceeeecccCChhHHHHHHHHH
Q 010361 145 HPEGLYALYACCLAGNLVEQLWNFAWPSA-IALLHP-SLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQ 222 (512)
Q Consensus 145 ~~r~f~~L~~g~~lS~~Gdri~~FAlpL~-~~~l~~-Sll~vav~~~~~~Lp~ll~gp~aG~lvDR~~Rr~vmi~~dlvq 222 (512)
+++.++.+....++..........-.|.| +....+ +....+.+.....+..++..+..|.+.||++||+++..+-++.
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~ 335 (438)
T 3o7q_A 256 RIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIA 335 (438)
T ss_dssp TCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred hChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 67788999999999888888888888888 777767 8888999988888999999999999999999999887776543
Q ss_pred HHHHHHHHHHHHHHHhhcccCCCchhHHHHHHHHHHHHHHHHHhHhhhh-hhcccceeEecCCCchhHHHHHHHHHHHHH
Q 010361 223 AAAQLLSAAMIIHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGV-AVERDWAVLLAGINRPIALAKANAVLNRID 301 (512)
Q Consensus 223 ~~~v~ls~~li~~~~~~~~~~~~~l~~~l~~v~~llg~i~~l~sva~~i-averdWVp~Lv~~~~~~~L~~aNs~l~~Id 301 (512)
.+ .+.+ .. ... + ...++..++.+.......+.... ..| ..++ +-..+.+... ..
T Consensus 336 ~~----~~~~--~~--~~~---~---~~~~~~~~~~g~~~~~~~~~~~~~~~~------~~~~----~~~~~~~~~~-~~ 390 (438)
T 3o7q_A 336 MA----LCLI--SA--FAG---G---HVGLIALTLCSAFMSIQYPTIFSLGIK------NLGQ----DTKYGSSFIV-MT 390 (438)
T ss_dssp HH----HHHH--HH--HCC---H---HHHHHHHHHHHHHHTTHHHHHHHHHHS------SCGG----GHHHHHHHHH-HT
T ss_pred HH----HHHH--HH--HcC---C---cHHHHHHHHHHHHHHHHHHHHHHHHHh------hccc----cccchhhHHH-HH
Confidence 22 1111 11 111 1 11222223334333322222222 122 2222 3333334333 55
Q ss_pred HHHHHHhHHHHHHHHhhcc-hhhH
Q 010361 302 LLCEIAGASLFGILLSKYE-PVTC 324 (512)
Q Consensus 302 l~~kilGP~lgGlL~s~~s-~~~~ 324 (512)
.+...+||.+.|.+....+ ....
T Consensus 391 ~~g~~~~~~~~g~l~~~~g~~~~~ 414 (438)
T 3o7q_A 391 IIGGGIVTPVMGFVSDAAGNIPTA 414 (438)
T ss_dssp THHHHHHHHHHHHHHHHHTSSGGG
T ss_pred HHHHHHHHHHHHHHHHHhcchHHH
Confidence 6889999999999999876 4443
No 10
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=95.62 E-value=0.023 Score=58.12 Aligned_cols=80 Identities=11% Similarity=0.019 Sum_probs=61.1
Q ss_pred hhhcCcchhHHHHHHHHHHHhhhhhhHHHHHHHHH-hCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhhChhhHHHHHHH
Q 010361 392 EYMQQPVLPASLAYVLLCLNVVLTPGSLMTAFLTQ-RGLNPSIIGGFSGLCASMGVAATFLSAYLVRRLGILKAGAAGLI 470 (512)
Q Consensus 392 ~y~~qpvl~asla~alL~~tvll~~~~l~v~yl~~-lGls~~~iG~~~g~gavgGLlGt~lap~L~rRlG~~ragl~~l~ 470 (512)
+++++|-++......++++.........+..|+++ .|+++.+.|++.+...++..+|..+.+++.+|+|..|...++..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~ 81 (417)
T 2cfq_A 2 YYLKNTNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIIT 81 (417)
T ss_dssp TTTSCHHHHHHHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHH
T ss_pred ccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHH
Confidence 46777766654443334432213344578888875 79999999999999999999999999999999999998776655
Q ss_pred H
Q 010361 471 F 471 (512)
Q Consensus 471 ~ 471 (512)
.
T Consensus 82 ~ 82 (417)
T 2cfq_A 82 G 82 (417)
T ss_dssp H
T ss_pred H
Confidence 3
No 11
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=95.56 E-value=0.014 Score=60.38 Aligned_cols=162 Identities=13% Similarity=-0.035 Sum_probs=87.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-ChhHHHHHHHHHHHHHHHccccceeeecccCChhHHHHHHHHHHHH-H
Q 010361 149 LYALYACCLAGNLVEQLWNFAWPSAIALLHP-SLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQAAA-Q 226 (512)
Q Consensus 149 f~~L~~g~~lS~~Gdri~~FAlpL~~~~l~~-Sll~vav~~~~~~Lp~ll~gp~aG~lvDR~~Rr~vmi~~dlvq~~~-v 226 (512)
+..++...++...........+|.++....+ +....+.+.....+..++.++..|.+.||++||+.....-+.-... .
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~ 364 (491)
T 4aps_A 285 YIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFA 364 (491)
T ss_dssp HHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHH
Confidence 4555655555555555666678888887776 6566677777777888888999999999999886543211110110 0
Q ss_pred HHHHHHHHHHHhhcccCCCchhHHHHHHHHHHHHHHHHHhHhhhhhhcccceeEecCCCchhHHHHHHHHHHHHHHHHHH
Q 010361 227 LLSAAMIIHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDLLCEI 306 (512)
Q Consensus 227 ~ls~~li~~~~~~~~~~~~~l~~~l~~v~~llg~i~~l~sva~~iaverdWVp~Lv~~~~~~~L~~aNs~l~~Idl~~ki 306 (512)
.++..+..+.............+...+..++.+.......+.....+ ....+++ ....+.+.......+...
T Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~-----~~~~p~~---~~g~~~g~~~~~~~~g~~ 436 (491)
T 4aps_A 365 GLSFLLMAIPGALYGTSGKVSPLWLVGSWALVILGEMLISPVGLSVT-----TKLAPKA---FNSQMMSMWFLSSSVGSA 436 (491)
T ss_dssp HHHHTTTHHHHHHCCCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHH-----HHHTTTT---CSSSSTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHH-----HHhCCHH---HHHHHHHHHHHHHHHHHH
Confidence 11111111110000000111112223333444544444333332222 2245543 466778888888888999
Q ss_pred HhHHHHHHHHhh
Q 010361 307 AGASLFGILLSK 318 (512)
Q Consensus 307 lGP~lgGlL~s~ 318 (512)
+||.++|.+...
T Consensus 437 i~~~~~~~~~~~ 448 (491)
T 4aps_A 437 LNAQLVTLYNAK 448 (491)
T ss_dssp HHHHHGGGGGGS
T ss_pred HHHHHHHHHhcc
Confidence 999998887654
No 12
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=94.72 E-value=0.011 Score=58.77 Aligned_cols=157 Identities=10% Similarity=-0.020 Sum_probs=97.8
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-ChhHHHHHHHHHHHHHHHccccceeeecccCChhHHHHHHHHHH
Q 010361 145 HPEGLYALYACCLAGNLVEQLWNFAWPSAIALLHP-SLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQA 223 (512)
Q Consensus 145 ~~r~f~~L~~g~~lS~~Gdri~~FAlpL~~~~l~~-Sll~vav~~~~~~Lp~ll~gp~aG~lvDR~~Rr~vmi~~dlvq~ 223 (512)
+++.++.++...++...+......-.|.++.+..+ +....+.......+..++.++..|.+.||.+| +.....-...
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~-~~~~~~~~~~- 274 (375)
T 2gfp_A 197 GNSGFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFST-LMWQSVICCL- 274 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHH-HHHHHHHHHH-
T ss_pred cCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH-
Confidence 34678888888888888888888888888877666 77788888888888889999999999999877 2222221100
Q ss_pred HHHHHHHHHHHHHHhhcccCCCchhHHHHHHHHHHHHHHHHHhHhhhhhhcccceeEecCCCchhHHHHHHHHHHHHHHH
Q 010361 224 AAQLLSAAMIIHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDLL 303 (512)
Q Consensus 224 ~~v~ls~~li~~~~~~~~~~~~~l~~~l~~v~~llg~i~~l~sva~~iaverdWVp~Lv~~~~~~~L~~aNs~l~~Idl~ 303 (512)
.....+........ .+ .+..++..++.+.......+.....+.+ ..+ ++..++++.......+
T Consensus 275 ---~~~~~~~~~~~~~~---~~--~~~~~~~~~l~g~~~~~~~~~~~~~~~~-----~~p----~~~g~~~g~~~~~~~~ 337 (375)
T 2gfp_A 275 ---LAGLLMWIPDWFGV---MN--VWTLLVPAALFFFGAGMLFPLATSGAME-----PFP----FLAGTAGALVGGLQNI 337 (375)
T ss_dssp ---HTSSSSSHHHHHHH---HH--HHHHHHHHHHHHHHHHHTSSTTHHHHHT-----HHH----HHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHhhhcc---cc--HHHHHHHHHHHHHHHHHhhHHHHHHHHH-----hCC----cccchHHHHHHHHHHH
Confidence 00000001110000 00 1112233334444444433333322221 333 2678899999999999
Q ss_pred HHHHhHHHHHHHHhhcc
Q 010361 304 CEIAGASLFGILLSKYE 320 (512)
Q Consensus 304 ~kilGP~lgGlL~s~~s 320 (512)
+..+||.++|.+....+
T Consensus 338 g~~~~~~~~g~l~~~~~ 354 (375)
T 2gfp_A 338 GSGVLASLSAMLPQTGQ 354 (375)
T ss_dssp HHHCCSTTCTHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCc
Confidence 99999999999876543
No 13
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=91.89 E-value=5.1 Score=40.70 Aligned_cols=122 Identities=14% Similarity=-0.039 Sum_probs=64.1
Q ss_pred ChhHHHHHHHHHHHHHHHccccceeeecccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCchhHHHHHHHHHHH
Q 010361 180 SLLPVAVMGFFSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQAAAQLLSAAMIIHAHTVIPTSSSMLLHPWFFVLVLAG 259 (512)
Q Consensus 180 Sll~vav~~~~~~Lp~ll~gp~aG~lvDR~~Rr~vmi~~dlvq~~~v~ls~~li~~~~~~~~~~~~~l~~~l~~v~~llg 259 (512)
+............+..++....++.++||++||+.++..-.+..+. ...+....... ..+ ...+....+...
T Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~----~~~l~~~~~~~--~~~--~~~~~~~~~~~~ 381 (491)
T 4gc0_A 310 STDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIG----MFSLGTAFYTQ--APG--IVALLSMLFYVA 381 (491)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHH----HHHHHHHHHTT--CCH--HHHHHHHHHHHH
T ss_pred CccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHH----HHHHHHHHhcc--cch--HHHHHHHHHHHH
Confidence 5555556666667778888899999999999999988776554332 11111111111 111 111111111111
Q ss_pred HHHHHHhHhhhhhhcccceeEecCCCchhHHHHHHHHHHHHHHHHHHHhHHHHHHHHh
Q 010361 260 AVERLTGVALGVAVERDWAVLLAGINRPIALAKANAVLNRIDLLCEIAGASLFGILLS 317 (512)
Q Consensus 260 ~i~~l~sva~~iaverdWVp~Lv~~~~~~~L~~aNs~l~~Idl~~kilGP~lgGlL~s 317 (512)
.+...... +.--+.+.+.+.+ ....+.+.......++.+++|.+...+..
T Consensus 382 ----~~~~~~~~-~~~~~~~E~fPt~---~R~~~~g~~~~~~~~~~~i~~~~~p~l~~ 431 (491)
T 4gc0_A 382 ----AFAMSWGP-VCWVLLSEIFPNA---IRGKALAIAVAAQWLANYFVSWTFPMMDK 431 (491)
T ss_dssp ----HHHTTTTH-HHHHHHHHSSCTT---THHHHHHHHHHHHHHHHHHHHTHHHHHCH
T ss_pred ----HHHhHHHH-HHHHHHHHhCCHh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111110 0001122245442 56778888888888888888877766543
No 14
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=91.59 E-value=0.83 Score=47.31 Aligned_cols=58 Identities=12% Similarity=0.041 Sum_probs=48.7
Q ss_pred hhHHHHHHHHH-hC------CCcchhHHHHHHHHHHHHHHHHHHHHHHHhh-ChhhHHHHHHHHHH
Q 010361 416 PGSLMTAFLTQ-RG------LNPSIIGGFSGLCASMGVAATFLSAYLVRRL-GILKAGAAGLIFQA 473 (512)
Q Consensus 416 ~~~l~v~yl~~-lG------ls~~~iG~~~g~gavgGLlGt~lap~L~rRl-G~~ragl~~l~~Q~ 473 (512)
....+..|+.+ .| +++.++|++.++..++.+++.++.+++.+|+ |..|...++.....
T Consensus 31 ~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~ 96 (524)
T 2xut_A 31 MRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYC 96 (524)
T ss_dssp HHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 34566677764 78 9999999999999999999999999999999 99998777665443
No 15
>2kv5_A FST, putative uncharacterized protein RNAI; toxin-antitoxin, bacterial, toxin; NMR {Enterococcus faecalis}
Probab=27.88 E-value=25 Score=23.68 Aligned_cols=19 Identities=21% Similarity=0.448 Sum_probs=14.3
Q ss_pred HHHHHHHhHHHHHHHHhhc
Q 010361 301 DLLCEIAGASLFGILLSKY 319 (512)
Q Consensus 301 dl~~kilGP~lgGlL~s~~ 319 (512)
+.+..++||++.|.++..+
T Consensus 3 ~i~~~IIaPivVGvvl~L~ 21 (33)
T 2kv5_A 3 DLMSLVIAPIFVGLVLEMI 21 (33)
T ss_dssp TTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3467899999998877643
Done!