BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010362
(512 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 143 bits (361), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 96/319 (30%), Positives = 156/319 (48%), Gaps = 25/319 (7%)
Query: 201 PTTLSHTIKFGTKSHAECA---RFSPDGQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADE 257
P ++ +KF H + +FSP+G++L S S D I++W GK +K
Sbjct: 30 PVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK-------- 81
Query: 258 TFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRD 317
T H + + +S DS +L S S D +K+W + SG+CL+ L + HS V F+
Sbjct: 82 TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL-KGHSNYVFCCNFNPQ 140
Query: 318 GSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDL 377
+ I+S SFD + RI +K+GK LK HS V+ F DGS +V++S D ++WD
Sbjct: 141 SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 200
Query: 378 KSTDCLQTF--KPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTL-QGQVVKSF 434
S CL+T PP+ S F N +I+ +++ + +G+ +K++
Sbjct: 201 ASGQCLKTLIDDDNPPV--------SFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY 252
Query: 435 SSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPH 494
+ K E A G+WI ED +Y ++ Q+ ++ ++ H VI HP
Sbjct: 253 TGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPT 312
Query: 495 RNLLATYG--EDCTMKLWK 511
N++A+ D T+KLWK
Sbjct: 313 ENIIASAALENDKTIKLWK 331
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 143 bits (360), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 96/319 (30%), Positives = 156/319 (48%), Gaps = 25/319 (7%)
Query: 201 PTTLSHTIKFGTKSHAECA---RFSPDGQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADE 257
P ++ +KF H + +FSP+G++L S S D I++W GK +K
Sbjct: 32 PVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK-------- 83
Query: 258 TFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRD 317
T H + + +S DS +L S S D +K+W + SG+CL+ L + HS V F+
Sbjct: 84 TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL-KGHSNYVFCCNFNPQ 142
Query: 318 GSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDL 377
+ I+S SFD + RI +K+GK LK HS V+ F DGS +V++S D ++WD
Sbjct: 143 SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 202
Query: 378 KSTDCLQTF--KPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTL-QGQVVKSF 434
S CL+T PP+ S F N +I+ +++ + +G+ +K++
Sbjct: 203 ASGQCLKTLIDDDNPPV--------SFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY 254
Query: 435 SSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPH 494
+ K E A G+WI ED +Y ++ Q+ ++ ++ H VI HP
Sbjct: 255 TGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPT 314
Query: 495 RNLLATYG--EDCTMKLWK 511
N++A+ D T+KLWK
Sbjct: 315 ENIIASAALENDKTIKLWK 333
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 142 bits (359), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 96/319 (30%), Positives = 156/319 (48%), Gaps = 25/319 (7%)
Query: 201 PTTLSHTIKFGTKSHAECA---RFSPDGQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADE 257
P ++ +KF H + +FSP+G++L S S D I++W GK +K
Sbjct: 8 PVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK-------- 59
Query: 258 TFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRD 317
T H + + +S DS +L S S D +K+W + SG+CL+ L + HS V F+
Sbjct: 60 TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL-KGHSNYVFCCNFNPQ 118
Query: 318 GSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDL 377
+ I+S SFD + RI +K+GK LK HS V+ F DGS +V++S D ++WD
Sbjct: 119 SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 178
Query: 378 KSTDCLQTF--KPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTL-QGQVVKSF 434
S CL+T PP+ S F N +I+ +++ + +G+ +K++
Sbjct: 179 ASGQCLKTLIDDDNPPV--------SFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY 230
Query: 435 SSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPH 494
+ K E A G+WI ED +Y ++ Q+ ++ ++ H VI HP
Sbjct: 231 TGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPT 290
Query: 495 RNLLATYG--EDCTMKLWK 511
N++A+ D T+KLWK
Sbjct: 291 ENIIASAALENDKTIKLWK 309
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 142 bits (359), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 96/319 (30%), Positives = 156/319 (48%), Gaps = 25/319 (7%)
Query: 201 PTTLSHTIKFGTKSHAECA---RFSPDGQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADE 257
P ++ +KF H + +FSP+G++L S S D I++W GK +K
Sbjct: 25 PVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK-------- 76
Query: 258 TFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRD 317
T H + + +S DS +L S S D +K+W + SG+CL+ L + HS V F+
Sbjct: 77 TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL-KGHSNYVFCCNFNPQ 135
Query: 318 GSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDL 377
+ I+S SFD + RI +K+GK LK HS V+ F DGS +V++S D ++WD
Sbjct: 136 SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 195
Query: 378 KSTDCLQTF--KPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTL-QGQVVKSF 434
S CL+T PP+ S F N +I+ +++ + +G+ +K++
Sbjct: 196 ASGQCLKTLIDDDNPPV--------SFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY 247
Query: 435 SSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPH 494
+ K E A G+WI ED +Y ++ Q+ ++ ++ H VI HP
Sbjct: 248 TGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPT 307
Query: 495 RNLLATYG--EDCTMKLWK 511
N++A+ D T+KLWK
Sbjct: 308 ENIIASAALENDKTIKLWK 326
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 142 bits (359), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 96/319 (30%), Positives = 156/319 (48%), Gaps = 25/319 (7%)
Query: 201 PTTLSHTIKFGTKSHAECA---RFSPDGQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADE 257
P ++ +KF H + +FSP+G++L S S D I++W GK +K
Sbjct: 4 PVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK-------- 55
Query: 258 TFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRD 317
T H + + +S DS +L S S D +K+W + SG+CL+ L + HS V F+
Sbjct: 56 TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL-KGHSNYVFCCNFNPQ 114
Query: 318 GSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDL 377
+ I+S SFD + RI +K+GK LK HS V+ F DGS +V++S D ++WD
Sbjct: 115 SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 174
Query: 378 KSTDCLQTF--KPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTL-QGQVVKSF 434
S CL+T PP+ S F N +I+ +++ + +G+ +K++
Sbjct: 175 ASGQCLKTLIDDDNPPV--------SFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY 226
Query: 435 SSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPH 494
+ K E A G+WI ED +Y ++ Q+ ++ ++ H VI HP
Sbjct: 227 TGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPT 286
Query: 495 RNLLATYG--EDCTMKLWK 511
N++A+ D T+KLWK
Sbjct: 287 ENIIASAALENDKTIKLWK 305
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 142 bits (359), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 96/319 (30%), Positives = 156/319 (48%), Gaps = 25/319 (7%)
Query: 201 PTTLSHTIKFGTKSHAECA---RFSPDGQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADE 257
P ++ +KF H + +FSP+G++L S S D I++W GK +K
Sbjct: 13 PVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK-------- 64
Query: 258 TFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRD 317
T H + + +S DS +L S S D +K+W + SG+CL+ L + HS V F+
Sbjct: 65 TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL-KGHSNYVFCCNFNPQ 123
Query: 318 GSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDL 377
+ I+S SFD + RI +K+GK LK HS V+ F DGS +V++S D ++WD
Sbjct: 124 SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 183
Query: 378 KSTDCLQTF--KPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTL-QGQVVKSF 434
S CL+T PP+ S F N +I+ +++ + +G+ +K++
Sbjct: 184 ASGQCLKTLIDDDNPPV--------SFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY 235
Query: 435 SSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPH 494
+ K E A G+WI ED +Y ++ Q+ ++ ++ H VI HP
Sbjct: 236 TGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPT 295
Query: 495 RNLLATYG--EDCTMKLWK 511
N++A+ D T+KLWK
Sbjct: 296 ENIIASAALENDKTIKLWK 314
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 142 bits (359), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 96/319 (30%), Positives = 156/319 (48%), Gaps = 25/319 (7%)
Query: 201 PTTLSHTIKFGTKSHAECA---RFSPDGQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADE 257
P ++ +KF H + +FSP+G++L S S D I++W GK +K
Sbjct: 14 PVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK-------- 65
Query: 258 TFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRD 317
T H + + +S DS +L S S D +K+W + SG+CL+ L + HS V F+
Sbjct: 66 TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL-KGHSNYVFCCNFNPQ 124
Query: 318 GSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDL 377
+ I+S SFD + RI +K+GK LK HS V+ F DGS +V++S D ++WD
Sbjct: 125 SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 184
Query: 378 KSTDCLQTF--KPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTL-QGQVVKSF 434
S CL+T PP+ S F N +I+ +++ + +G+ +K++
Sbjct: 185 ASGQCLKTLIDDDNPPV--------SFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY 236
Query: 435 SSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPH 494
+ K E A G+WI ED +Y ++ Q+ ++ ++ H VI HP
Sbjct: 237 TGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPT 296
Query: 495 RNLLATYG--EDCTMKLWK 511
N++A+ D T+KLWK
Sbjct: 297 ENIIASAALENDKTIKLWK 315
Score = 65.1 bits (157), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 59/107 (55%)
Query: 281 GSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKL 340
GS + K ++ L+ H++ V+S+ FS +G + S+S D +I G GK
Sbjct: 4 GSSATQSKPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKF 63
Query: 341 LKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFK 387
K GH ++D +++D + +V+AS D T+K+WD+ S CL+T K
Sbjct: 64 EKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK 110
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 142 bits (358), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 96/319 (30%), Positives = 156/319 (48%), Gaps = 25/319 (7%)
Query: 201 PTTLSHTIKFGTKSHAECA---RFSPDGQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADE 257
P ++ +KF H + +FSP+G++L S S D I++W GK +K
Sbjct: 7 PVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK-------- 58
Query: 258 TFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRD 317
T H + + +S DS +L S S D +K+W + SG+CL+ L + HS V F+
Sbjct: 59 TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL-KGHSNYVFCCNFNPQ 117
Query: 318 GSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDL 377
+ I+S SFD + RI +K+GK LK HS V+ F DGS +V++S D ++WD
Sbjct: 118 SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 177
Query: 378 KSTDCLQTF--KPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTL-QGQVVKSF 434
S CL+T PP+ S F N +I+ +++ + +G+ +K++
Sbjct: 178 ASGQCLKTLIDDDNPPV--------SFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY 229
Query: 435 SSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPH 494
+ K E A G+WI ED +Y ++ Q+ ++ ++ H VI HP
Sbjct: 230 TGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPT 289
Query: 495 RNLLATYG--EDCTMKLWK 511
N++A+ D T+KLWK
Sbjct: 290 ENIIASAALENDKTIKLWK 308
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 142 bits (358), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 96/319 (30%), Positives = 156/319 (48%), Gaps = 25/319 (7%)
Query: 201 PTTLSHTIKFGTKSHAECA---RFSPDGQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADE 257
P ++ +KF H + +FSP+G++L S S D I++W GK +K
Sbjct: 14 PVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK-------- 65
Query: 258 TFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRD 317
T H + + +S DS +L S S D +K+W + SG+CL+ L + HS V F+
Sbjct: 66 TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL-KGHSNYVFCCNFNPQ 124
Query: 318 GSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDL 377
+ I+S SFD + RI +K+GK LK HS V+ F DGS +V++S D ++WD
Sbjct: 125 SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 184
Query: 378 KSTDCLQTF--KPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTL-QGQVVKSF 434
S CL+T PP+ S F N +I+ +++ + +G+ +K++
Sbjct: 185 ASGQCLKTLIDDDNPPV--------SFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY 236
Query: 435 SSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPH 494
+ K E A G+WI ED +Y ++ Q+ ++ ++ H VI HP
Sbjct: 237 TGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPT 296
Query: 495 RNLLATYG--EDCTMKLWK 511
N++A+ D T+KLWK
Sbjct: 297 ENIIASAALENDKTIKLWK 315
Score = 65.9 bits (159), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 60/109 (55%)
Query: 279 ASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSG 338
A GS + K ++ L+ H++ V+S+ FS +G + S+S D +I G G
Sbjct: 2 AMGSSATQSKPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG 61
Query: 339 KLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFK 387
K K GH ++D +++D + +V+AS D T+K+WD+ S CL+T K
Sbjct: 62 KFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK 110
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 142 bits (358), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 96/319 (30%), Positives = 156/319 (48%), Gaps = 25/319 (7%)
Query: 201 PTTLSHTIKFGTKSHAECA---RFSPDGQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADE 257
P ++ +KF H + +FSP+G++L S S D I++W GK +K
Sbjct: 14 PVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK-------- 65
Query: 258 TFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRD 317
T H + + +S DS +L S S D +K+W + SG+CL+ L + HS V F+
Sbjct: 66 TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL-KGHSNYVFCCNFNPQ 124
Query: 318 GSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDL 377
+ I+S SFD + RI +K+GK LK HS V+ F DGS +V++S D ++WD
Sbjct: 125 SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 184
Query: 378 KSTDCLQTF--KPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTL-QGQVVKSF 434
S CL+T PP+ S F N +I+ +++ + +G+ +K++
Sbjct: 185 ASGQCLKTLIDDDNPPV--------SFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY 236
Query: 435 SSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPH 494
+ K E A G+WI ED +Y ++ Q+ ++ ++ H VI HP
Sbjct: 237 TGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPT 296
Query: 495 RNLLATYG--EDCTMKLWK 511
N++A+ D T+KLWK
Sbjct: 297 ENIIASAALENDKTIKLWK 315
Score = 65.5 bits (158), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 60/107 (56%)
Query: 281 GSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKL 340
GS + + K ++ L+ H++ V+S+ FS +G + S+S D +I G GK
Sbjct: 4 GSPEFQSKPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKF 63
Query: 341 LKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFK 387
K GH ++D +++D + +V+AS D T+K+WD+ S CL+T K
Sbjct: 64 EKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK 110
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 142 bits (358), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 96/319 (30%), Positives = 156/319 (48%), Gaps = 25/319 (7%)
Query: 201 PTTLSHTIKFGTKSHAECA---RFSPDGQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADE 257
P ++ +KF H + +FSP+G++L S S D I++W GK +K
Sbjct: 8 PVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK-------- 59
Query: 258 TFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRD 317
T H + + +S DS +L S S D +K+W + SG+CL+ L + HS V F+
Sbjct: 60 TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL-KGHSNYVFCCNFNPQ 118
Query: 318 GSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDL 377
+ I+S SFD + RI +K+GK LK HS V+ F DGS +V++S D ++WD
Sbjct: 119 SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 178
Query: 378 KSTDCLQTF--KPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTL-QGQVVKSF 434
S CL+T PP+ S F N +I+ +++ + +G+ +K++
Sbjct: 179 ASGQCLKTLIDDDNPPV--------SFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY 230
Query: 435 SSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPH 494
+ K E A G+WI ED +Y ++ Q+ ++ ++ H VI HP
Sbjct: 231 TGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPT 290
Query: 495 RNLLATYG--EDCTMKLWK 511
N++A+ D T+KLWK
Sbjct: 291 ENIIASAALENDKTIKLWK 309
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 142 bits (358), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 96/319 (30%), Positives = 156/319 (48%), Gaps = 25/319 (7%)
Query: 201 PTTLSHTIKFGTKSHAECA---RFSPDGQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADE 257
P ++ +KF H + +FSP+G++L S S D I++W GK +K
Sbjct: 9 PVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK-------- 60
Query: 258 TFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRD 317
T H + + +S DS +L S S D +K+W + SG+CL+ L + HS V F+
Sbjct: 61 TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL-KGHSNYVFCCNFNPQ 119
Query: 318 GSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDL 377
+ I+S SFD + RI +K+GK LK HS V+ F DGS +V++S D ++WD
Sbjct: 120 SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 179
Query: 378 KSTDCLQTF--KPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTL-QGQVVKSF 434
S CL+T PP+ S F N +I+ +++ + +G+ +K++
Sbjct: 180 ASGQCLKTLIDDDNPPV--------SFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY 231
Query: 435 SSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPH 494
+ K E A G+WI ED +Y ++ Q+ ++ ++ H VI HP
Sbjct: 232 TGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPT 291
Query: 495 RNLLATYG--EDCTMKLWK 511
N++A+ D T+KLWK
Sbjct: 292 ENIIASAALENDKTIKLWK 310
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 140 bits (352), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 94/315 (29%), Positives = 155/315 (49%), Gaps = 25/315 (7%)
Query: 205 SHTIKFGTKSHAECA---RFSPDGQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMM 261
++ +KF H + +FSP+G++L + S D I++W GK +K T
Sbjct: 15 NYALKFTLAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEK--------TISG 66
Query: 262 HDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQI 321
H + + +S DS +L S S D +K+W + SG+CL+ L + HS V F+ + I
Sbjct: 67 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL-KGHSNYVFCCNFNPQSNLI 125
Query: 322 LSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTD 381
+S SFD + RI +K+GK LK HS V+ F DGS +V++S D ++WD S
Sbjct: 126 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 185
Query: 382 CLQTF--KPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTL-QGQVVKSFSSGK 438
CL+T PP+ S F N +I+ +++ + +G+ +K+++ K
Sbjct: 186 CLKTLIDDDNPPV--------SFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHK 237
Query: 439 REGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPHRNLL 498
E A G+WI ED +Y ++ Q+ ++ ++ H VI HP N++
Sbjct: 238 NEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENII 297
Query: 499 ATYG--EDCTMKLWK 511
A+ D T+KLWK
Sbjct: 298 ASAALENDKTIKLWK 312
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 55/96 (57%)
Query: 292 IRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYV 351
++ L+ H++ V+S+ FS +G + ++S D +I G GK K GH +
Sbjct: 12 VKPNYALKFTLAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGHKLGI 71
Query: 352 NDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFK 387
+D +++D + +V+AS D T+K+WD+ S CL+T K
Sbjct: 72 SDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK 107
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 138 bits (348), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 94/319 (29%), Positives = 154/319 (48%), Gaps = 25/319 (7%)
Query: 201 PTTLSHTIKFGTKSHAECA---RFSPDGQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADE 257
P ++ + F H + +FSP+G++L S S D I++W GK +K
Sbjct: 11 PVKPNYALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK-------- 62
Query: 258 TFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRD 317
T H + + +S DS +L S S D +K+W + SG+CL+ L + HS V F+
Sbjct: 63 TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL-KGHSNYVFCCNFNPQ 121
Query: 318 GSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDL 377
+ I+S SFD + RI +K+G LK HS V+ F DGS +V++S D ++WD
Sbjct: 122 SNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 181
Query: 378 KSTDCLQTF--KPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTL-QGQVVKSF 434
S CL+T PP+ S F N +I+ +++ + +G+ +K++
Sbjct: 182 ASGQCLKTLIDDDNPPV--------SFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY 233
Query: 435 SSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPH 494
+ K E A G+WI ED +Y ++ Q+ ++ ++ H VI HP
Sbjct: 234 TGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQGHTDVVISTACHPT 293
Query: 495 RNLLATYG--EDCTMKLWK 511
N++A+ D T+KLWK
Sbjct: 294 ENIIASAALENDKTIKLWK 312
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 137 bits (346), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 94/319 (29%), Positives = 153/319 (47%), Gaps = 25/319 (7%)
Query: 201 PTTLSHTIKFGTKSHAECA---RFSPDGQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADE 257
P ++ + F H + +FSP+G++L S S D I++W GK +K
Sbjct: 11 PVKPNYALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK-------- 62
Query: 258 TFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRD 317
T H + + +S DS +L S S D +K+W + SG+CL+ L + HS V F+
Sbjct: 63 TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL-KGHSNYVFCCNFNPQ 121
Query: 318 GSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDL 377
+ I+S SFD + RI +K+G LK HS V+ F DGS +V++S D ++WD
Sbjct: 122 SNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 181
Query: 378 KSTDCLQTF--KPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTL-QGQVVKSF 434
S CL+T PP+ S F N +I+ + + + +G+ +K++
Sbjct: 182 ASGQCLKTLIDDDNPPV--------SFVKFSPNGKYILAATLDNDLKLWDYSKGKCLKTY 233
Query: 435 SSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPH 494
+ K E A G+WI ED +Y ++ Q+ ++ ++ H VI HP
Sbjct: 234 TGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQGHTDVVISTACHPT 293
Query: 495 RNLLATYG--EDCTMKLWK 511
N++A+ D T+KLWK
Sbjct: 294 ENIIASAALENDKTIKLWK 312
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 137 bits (345), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 94/315 (29%), Positives = 155/315 (49%), Gaps = 25/315 (7%)
Query: 205 SHTIKFGTKSHAECA---RFSPDGQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMM 261
++ +KF H + +FSP+G++L S S D I++W GK +K T
Sbjct: 15 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK--------TISG 66
Query: 262 HDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQI 321
H + + +S DS +L S S D +K+W + SG+CL+ L + HS V F+ + I
Sbjct: 67 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL-KGHSNYVFCCNFNPQSNLI 125
Query: 322 LSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTD 381
+S SFD + RI +K+GK LK HS V+ F DGS +V++S D ++WD S
Sbjct: 126 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 185
Query: 382 CLQTF--KPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTL-QGQVVKSFSSGK 438
CL+T PP+ S F N +I+ +++ + +G+ +K+++ K
Sbjct: 186 CLKTLIDDDNPPV--------SFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHK 237
Query: 439 REGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPHRNLL 498
E A G+WI ED +Y ++ Q+ ++ ++ H VI HP N++
Sbjct: 238 NEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENII 297
Query: 499 ATYG--EDCTMKLWK 511
A+ D T+KL+K
Sbjct: 298 ASAALENDKTIKLYK 312
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 55/96 (57%)
Query: 292 IRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYV 351
++ L+ H++ V+S+ FS +G + S+S D +I G GK K GH +
Sbjct: 12 VKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGI 71
Query: 352 NDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFK 387
+D +++D + +V+AS D T+K+WD+ S CL+T K
Sbjct: 72 SDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK 107
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 136 bits (343), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 94/315 (29%), Positives = 155/315 (49%), Gaps = 25/315 (7%)
Query: 205 SHTIKFGTKSHAECA---RFSPDGQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMM 261
++ +KF H + +FSP+G++L S S D I++W GK +K T
Sbjct: 15 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK--------TISG 66
Query: 262 HDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQI 321
H + + +S DS +L S S D +K+W + SG+CL+ L + HS V F+ + I
Sbjct: 67 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL-KGHSNYVFCCNFNPQSNLI 125
Query: 322 LSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTD 381
+S SFD + RI +K+GK LK HS V+ F DGS +V++S D ++WD S
Sbjct: 126 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 185
Query: 382 CLQTF--KPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTL-QGQVVKSFSSGK 438
CL+T PP+ S F N +I+ +++ + +G+ +K+++ K
Sbjct: 186 CLKTLIDDDNPPV--------SFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHK 237
Query: 439 REGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPHRNLL 498
E A G+WI ED +Y ++ Q+ ++ ++ H VI HP N++
Sbjct: 238 NEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENII 297
Query: 499 ATYG--EDCTMKLWK 511
A+ D T+KL+K
Sbjct: 298 ASAALENDKTIKLFK 312
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 55/96 (57%)
Query: 292 IRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYV 351
++ L+ H++ V+S+ FS +G + S+S D +I G GK K GH +
Sbjct: 12 VKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGI 71
Query: 352 NDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFK 387
+D +++D + +V+AS D T+K+WD+ S CL+T K
Sbjct: 72 SDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK 107
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 127 bits (319), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 92/301 (30%), Positives = 144/301 (47%), Gaps = 24/301 (7%)
Query: 211 GTKSHAECARFSPDGQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIE 270
G S FSPDGQ + S S D +++W+ +G+L +T H +V +
Sbjct: 96 GHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLL--------QTLTGHSSSVWGVA 146
Query: 271 FSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTA 330
FS D + +AS S D +K+W R+GQ L+ L HS V + FS DG I S S D T
Sbjct: 147 FSPDGQTIASASDDKTVKLWN-RNGQLLQTLT-GHSSSVWGVAFSPDGQTIASASDDKTV 204
Query: 331 RIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPP 390
++ ++G+LL+ GHSS V F+ DG + +AS D TVK+W+ ++ LQT
Sbjct: 205 KLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQT----- 257
Query: 391 PLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQVVKSFSSGKREGGDFVAACVS 450
L G +SVN V P + I + ++ + GQ++++ + S
Sbjct: 258 -LTGHSSSVNGVAFRP-DGQTIASASDDKTVKLWNRNGQLLQTLTG---HSSSVWGVAFS 312
Query: 451 PKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPHRNLLATYGEDCTMKLW 510
P G+ I +D+ + ++ L+ L H V GV P +A+ +D T+KLW
Sbjct: 313 PDGQTIASASDDKTVKLWNRNGQHLQTLTG-HSSSVWGVAFSPDGQTIASASDDKTVKLW 371
Query: 511 K 511
Sbjct: 372 N 372
Score = 125 bits (313), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 98/332 (29%), Positives = 152/332 (45%), Gaps = 45/332 (13%)
Query: 211 GTKSHAECARFSPDGQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIE 270
G S FSPDGQ + S S D +++W+ +G+L +T H +V +
Sbjct: 137 GHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLL--------QTLTGHSSSVWGVA 187
Query: 271 FSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTA 330
FS D + +AS S D +K+W R+GQ L+ L HS V + FS DG I S S D T
Sbjct: 188 FSPDGQTIASASDDKTVKLWN-RNGQLLQTLT-GHSSSVRGVAFSPDGQTIASASDDKTV 245
Query: 331 RIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQT----- 385
++ ++G+LL+ GHSS VN F DG + +AS D TVK+W+ ++ LQT
Sbjct: 246 KLWN-RNGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHS 303
Query: 386 -------FKPPPPLRGGDASVNSVHLFPKNPDHI-VVCNKTSSIYIMTLQ--GQVVKSFS 435
F P + +V L+ +N H+ + +SS++ + GQ + S S
Sbjct: 304 SSVWGVAFSPDGQTIASASDDKTVKLWNRNGQHLQTLTGHSSSVWGVAFSPDGQTIASAS 363
Query: 436 SGK------REG----------GDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLM 479
K R G SP G+ I +D+ + + +++G+L +
Sbjct: 364 DDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLW-NRNGQLLQTL 422
Query: 480 KVHEKDVIGVTHHPHRNLLATYGEDCTMKLWK 511
H V GV P +A+ +D T+KLW
Sbjct: 423 TGHSSSVWGVAFSPDDQTIASASDDKTVKLWN 454
Score = 125 bits (313), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 91/302 (30%), Positives = 149/302 (49%), Gaps = 27/302 (8%)
Query: 213 KSHAECAR---FSPDGQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCI 269
++H+ R FSPDGQ + S S D +++W+ +G+L +T H +V +
Sbjct: 13 EAHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLL--------QTLTGHSSSVWGV 63
Query: 270 EFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDST 329
FS D + +AS S D +K+W R+GQ L+ L HS V + FS DG I S S D T
Sbjct: 64 AFSPDGQTIASASDDKTVKLWN-RNGQLLQTLT-GHSSSVRGVAFSPDGQTIASASDDKT 121
Query: 330 ARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPP 389
++ ++G+LL+ GHSS V F+ DG + +AS D TVK+W+ ++ LQT
Sbjct: 122 VKLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQT---- 175
Query: 390 PPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQVVKSFSSGKREGGDFVAACV 449
L G +SV V P + I + ++ + GQ++++ +
Sbjct: 176 --LTGHSSSVWGVAFSP-DGQTIASASDDKTVKLWNRNGQLLQTLTG---HSSSVRGVAF 229
Query: 450 SPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPHRNLLATYGEDCTMKL 509
SP G+ I +D+ + + +++G+L + H V GV P +A+ +D T+KL
Sbjct: 230 SPDGQTIASASDDKTVKLW-NRNGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKL 288
Query: 510 WK 511
W
Sbjct: 289 WN 290
Score = 122 bits (307), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 90/301 (29%), Positives = 145/301 (48%), Gaps = 24/301 (7%)
Query: 211 GTKSHAECARFSPDGQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIE 270
G S F PDGQ + S S D +++W+ +G+L +T H +V +
Sbjct: 260 GHSSSVNGVAFRPDGQTIASASDDKTVKLWNR-NGQLL--------QTLTGHSSSVWGVA 310
Query: 271 FSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTA 330
FS D + +AS S D +K+W R+GQ L+ L HS V + FS DG I S S D T
Sbjct: 311 FSPDGQTIASASDDKTVKLWN-RNGQHLQTLT-GHSSSVWGVAFSPDGQTIASASDDKTV 368
Query: 331 RIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPP 390
++ ++G+LL+ GHSS V F+ DG + +AS D TVK+W+ ++ LQT
Sbjct: 369 KLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQT----- 421
Query: 391 PLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQVVKSFSSGKREGGDFVAACVS 450
L G +SV V P + I + ++ + GQ++++ + S
Sbjct: 422 -LTGHSSSVWGVAFSPDDQT-IASASDDKTVKLWNRNGQLLQTLTG---HSSSVRGVAFS 476
Query: 451 PKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPHRNLLATYGEDCTMKLW 510
P G+ I +D+ + + +++G+L + H V GV P +A+ +D T+KLW
Sbjct: 477 PDGQTIASASDDKTVKLW-NRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLW 535
Query: 511 K 511
Sbjct: 536 N 536
Score = 120 bits (302), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 89/301 (29%), Positives = 141/301 (46%), Gaps = 24/301 (7%)
Query: 211 GTKSHAECARFSPDGQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIE 270
G S FSPDGQ + S S D +++W+ L +T H +V +
Sbjct: 301 GHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQHL---------QTLTGHSSSVWGVA 351
Query: 271 FSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTA 330
FS D + +AS S D +K+W R+GQ L+ L HS V + FS DG I S S D T
Sbjct: 352 FSPDGQTIASASDDKTVKLWN-RNGQLLQTLT-GHSSSVRGVAFSPDGQTIASASDDKTV 409
Query: 331 RIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPP 390
++ ++G+LL+ GHSS V F+ D + +AS D TVK+W+ ++ LQT
Sbjct: 410 KLWN-RNGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWN-RNGQLLQT----- 462
Query: 391 PLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQVVKSFSSGKREGGDFVAACVS 450
L G +SV V P + I + ++ + GQ++++ + S
Sbjct: 463 -LTGHSSSVRGVAFSP-DGQTIASASDDKTVKLWNRNGQLLQTLTG---HSSSVRGVAFS 517
Query: 451 PKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPHRNLLATYGEDCTMKLW 510
P G+ I +D+ + + +++G+L + H V GV P +A+ D T+KLW
Sbjct: 518 PDGQTIASASDDKTVKLW-NRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASSDKTVKLW 576
Query: 511 K 511
Sbjct: 577 N 577
Score = 86.3 bits (212), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 64/213 (30%), Positives = 103/213 (48%), Gaps = 14/213 (6%)
Query: 299 RRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTN 358
RLE AHS V + FS DG I S S D T ++ ++G+LL+ GHSS V F+
Sbjct: 10 NRLE-AHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSP 67
Query: 359 DGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKT 418
DG + +AS D TVK+W+ ++ LQT L G +SV V P + I +
Sbjct: 68 DGQTIASASDDKTVKLWN-RNGQLLQT------LTGHSSSVRGVAFSP-DGQTIASASDD 119
Query: 419 SSIYIMTLQGQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHL 478
++ + GQ++++ + SP G+ I +D+ + + +++G+L
Sbjct: 120 KTVKLWNRNGQLLQTLTG---HSSSVWGVAFSPDGQTIASASDDKTVKLW-NRNGQLLQT 175
Query: 479 MKVHEKDVIGVTHHPHRNLLATYGEDCTMKLWK 511
+ H V GV P +A+ +D T+KLW
Sbjct: 176 LTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN 208
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 21/43 (48%)
Query: 469 SHQSGKLEHLMKVHEKDVIGVTHHPHRNLLATYGEDCTMKLWK 511
SH K + ++ H V GV P +A+ +D T+KLW
Sbjct: 2 SHMGVKERNRLEAHSSSVRGVAFSPDGQTIASASDDKTVKLWN 44
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 96.7 bits (239), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 52/176 (29%), Positives = 95/176 (53%), Gaps = 12/176 (6%)
Query: 221 FSPDGQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLAS 280
S +G F VS S+D + +W+ +G+ QY+ F+ H + VL + FS D+ + S
Sbjct: 75 LSNNGNFAVSASWDHSLRLWNLQNGQC----QYK----FLGHTKDVLSVAFSPDNRQIVS 126
Query: 281 GSQDGKIKVWRIRSGQCLRRLER-AHSEGVTSLVFSR--DGSQILSTSFDSTARIHGLKS 337
G +D ++VW ++ G+C+ L R AH++ V+ + FS D I+S +D+ ++ L +
Sbjct: 127 GGRDNALRVWNVK-GECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWDLAT 185
Query: 338 GKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLR 393
G+L+ + +GH++YV + DGS ++ D ++WDL + L P+
Sbjct: 186 GRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWDLTKGEALSEMAAGAPIN 241
Score = 66.6 bits (161), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 49/170 (28%), Positives = 86/170 (50%), Gaps = 12/170 (7%)
Query: 221 FSPDGQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSR--DSEML 278
FSPD + +VS D + VW+ + G+ L A H + V C+ FS D+ ++
Sbjct: 117 FSPDNRQIVSGGRDNALRVWN-VKGECMHTLSRGA------HTDWVSCVRFSPSLDAPVI 169
Query: 279 ASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSG 338
SG D +KVW + +G+ + L + H+ VTS+ S DGS S+ D AR+ L G
Sbjct: 170 VSGGWDNLVKVWDLATGRLVTDL-KGHTNYVTSVTVSPDGSLCASSDKDGVARLWDLTKG 228
Query: 339 KLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKP 388
+ L E + +N F+ + + A+++ ++++DL++ D + P
Sbjct: 229 EALSEMAAGAP-INQICFSPN-RYWMCAATEKGIRIFDLENKDIIVELAP 276
Score = 58.9 bits (141), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 60/223 (26%), Positives = 101/223 (45%), Gaps = 26/223 (11%)
Query: 304 AHSEGVTSLVFSRD---GSQILSTSFDSTARIHGLKSGKLLKE---------FRGHSSYV 351
H VTSL + ++++STS D T G + E GHS++V
Sbjct: 11 GHRGWVTSLACPQTPETATKVVSTSRDKTLLSWGPNPDRHSSECSYGLPDRRLEGHSAFV 70
Query: 352 NDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDH 411
+D +N+G+ V+AS D ++++W+L++ C F G V SV P N
Sbjct: 71 SDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKF------LGHTKDVLSVAFSPDN-RQ 123
Query: 412 IVVCNKTSSIYIMTLQGQVVKSFSSGKREGGDFVAACV--SPK--GEWIYCVGEDRNLYC 467
IV + +++ + ++G+ + + S G D+V +CV SP I G D +
Sbjct: 124 IVSGGRDNALRVWNVKGECMHTLSRGAHT--DWV-SCVRFSPSLDAPVIVSGGWDNLVKV 180
Query: 468 FSHQSGKLEHLMKVHEKDVIGVTHHPHRNLLATYGEDCTMKLW 510
+ +G+L +K H V VT P +L A+ +D +LW
Sbjct: 181 WDLATGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLW 223
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 60/245 (24%), Positives = 97/245 (39%), Gaps = 16/245 (6%)
Query: 228 LVSCSFDGFIEVWDYLSGKLKKDLQYQ-ADETFMMHDETVLCIEFSRDSEMLASGSQDGK 286
+VS S D + W + + Y D H V + S + S S D
Sbjct: 31 VVSTSRDKTLLSWGPNPDRHSSECSYGLPDRRLEGHSAFVSDVALSNNGNFAVSASWDHS 90
Query: 287 IKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRG 346
+++W +++GQC + H++ V S+ FS D QI+S D+ R+ +K + RG
Sbjct: 91 LRLWNLQNGQCQYKF-LGHTKDVLSVAFSPDNRQIVSGGRDNALRVWNVKGECMHTLSRG 149
Query: 347 -HSSYVNDAIFTN--DGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVH 403
H+ +V+ F+ D +V+ D VKVWDL T + L+G V SV
Sbjct: 150 AHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWDLA------TGRLVTDLKGHTNYVTSVT 203
Query: 404 LFPKNPDHIVVCNKTSSIYIMTLQGQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDR 463
+ P +C + + L S G C SP W+ C ++
Sbjct: 204 VSPDGS----LCASSDKDGVARLWDLTKGEALSEMAAGAPINQICFSPNRYWM-CAATEK 258
Query: 464 NLYCF 468
+ F
Sbjct: 259 GIRIF 263
Score = 33.1 bits (74), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 28/131 (21%), Positives = 52/131 (39%), Gaps = 16/131 (12%)
Query: 211 GTKSHAECARFSPDGQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIE 270
G ++ SPDG S DG +WD G+ ++ A + I
Sbjct: 194 GHTNYVTSVTVSPDGSLCASSDKDGVARLWDLTKGEALSEMAAGA---------PINQIC 244
Query: 271 FSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEG------VTSLVFSRDGSQILST 324
FS + + + ++ G I+++ + + + L H S+ +S DGS + S
Sbjct: 245 FSPNRYWMCAATEKG-IRIFDLENKDIIVELAPEHQGSKKIVPECVSIAWSADGSTLYSG 303
Query: 325 SFDSTARIHGL 335
D+ R+ G+
Sbjct: 304 YTDNVIRVWGV 314
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 93.2 bits (230), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 80/346 (23%), Positives = 142/346 (41%), Gaps = 42/346 (12%)
Query: 188 GTAAMKQDVEDMYPTTLSHTIKFGTKSHAECARFSPDGQFLVSCSFDGFIEVWDYLSGKL 247
G K+D ++ P G +S F P +VS S D I+VWDY +G
Sbjct: 83 GPLGQKRDPKEWIPRPPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDF 142
Query: 248 KKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSE 307
++ L+ H ++V I F ++LAS S D IK+W + +C+R + H
Sbjct: 143 ERTLK--------GHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMH-GHDH 193
Query: 308 GVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTAS 367
V+S+ +G I+S S D T ++ +++G +K F GH +V DG+ + + S
Sbjct: 194 NVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCS 253
Query: 368 SDCTVKVWDLKSTDCLQ------------TFKPPPPLRGGDASVNSVHLFPKNP------ 409
+D TV+VW + + +C ++ P + S P
Sbjct: 254 NDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLS 313
Query: 410 ----DHIVVCNKTSSIYIMTLQGQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNL 465
I + + ++ + +MTL G GG F+ +C +D+ L
Sbjct: 314 GSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSC-----------ADDKTL 362
Query: 466 YCFSHQSGKLEHLMKVHEKDVIGVTHHPHRNLLATYGEDCTMKLWK 511
+ +++ + + HE V + H + T D T+K+W+
Sbjct: 363 RVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 408
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 54/188 (28%), Positives = 79/188 (42%), Gaps = 29/188 (15%)
Query: 211 GTKSHAECARFSPDGQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIE 270
G + R + DG + SCS D + VW + + K +L+ H V CI
Sbjct: 232 GHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELRE--------HRHVVECIS 283
Query: 271 FSRDSE--------------------MLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVT 310
++ +S L SGS+D IK+W + +G CL L H V
Sbjct: 284 WAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTL-VGHDNWVR 342
Query: 311 SLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDC 370
++F G ILS + D T R+ K+ + +K H +V F VVT S D
Sbjct: 343 GVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQ 402
Query: 371 TVKVWDLK 378
TVKVW+ +
Sbjct: 403 TVKVWECR 410
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 92.4 bits (228), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 66/215 (30%), Positives = 104/215 (48%), Gaps = 23/215 (10%)
Query: 221 FSPDGQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLAS 280
S DGQF +S S+DG + +WD +G + F+ H + VL + FS D+ + S
Sbjct: 71 ISSDGQFALSGSWDGTLRLWDLTTGTTTR--------RFVGHTKDVLSVAFSSDNRQIVS 122
Query: 281 GSQDGKIKVWRIRSGQCLRRLE-RAHSEGVTSLVFSRDGSQ--ILSTSFDSTARIHGLKS 337
GS+D IK+W G C ++ +HSE V+ + FS + S I+S +D ++ L +
Sbjct: 123 GSRDKTIKLWNTL-GVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLAN 181
Query: 338 GKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDA 397
KL GH+ Y+N + DGS + D +WDL L T L GGD
Sbjct: 182 CKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYT------LDGGDI 235
Query: 398 SVNSVHLFPKNPDHIVVCNKTS-SIYIMTLQGQVV 431
++ +P+ +C T SI I L+G+++
Sbjct: 236 ----INALCFSPNRYWLCAATGPSIKIWDLEGKII 266
Score = 68.9 bits (167), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 66/242 (27%), Positives = 107/242 (44%), Gaps = 18/242 (7%)
Query: 276 EMLASGSQDGKIKVWRIRSGQC----LRRLERAHSEGVTSLVFSRDGSQILSTSFDSTAR 331
+M+ S S+D I +W++ + +R R HS V+ +V S DG LS S+D T R
Sbjct: 29 DMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLR 88
Query: 332 IHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPP 391
+ L +G + F GH+ V F++D ++V+ S D T+K+W+ C T +
Sbjct: 89 LWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGV-CKYTVQD--- 144
Query: 392 LRGGDASVNSVHLFPKNPDHIVV-CNKTSSIYIMTLQGQVVKSFSSGKREGGDFVAACVS 450
V+ V P + + I+V C + + L +K+ G G VS
Sbjct: 145 -ESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHT--GYLNTVTVS 201
Query: 451 PKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVI-GVTHHPHRNLL-ATYGEDCTMK 508
P G G+D + GK HL + D+I + P+R L A G ++K
Sbjct: 202 PDGSLCASGGKDGQAMLWDLNEGK--HLYTLDGGDIINALCFSPNRYWLCAATGP--SIK 257
Query: 509 LW 510
+W
Sbjct: 258 IW 259
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 33/134 (24%), Positives = 50/134 (37%), Gaps = 18/134 (13%)
Query: 207 TIKFGTKSHAECARFSPDGQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHDETV 266
T G + SPDG S DG +WD GK Y D +++
Sbjct: 186 TNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGK----HLYTLDGGDIIN---A 238
Query: 267 LCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLE--------RAHSEGVTSLVFSRDG 318
LC +R A+G IK+W + + L+ +A TSL +S DG
Sbjct: 239 LCFSPNRYWLCAATGPS---IKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADG 295
Query: 319 SQILSTSFDSTARI 332
+ + D+ R+
Sbjct: 296 QTLFAGYTDNLVRV 309
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 92.4 bits (228), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 66/215 (30%), Positives = 104/215 (48%), Gaps = 23/215 (10%)
Query: 221 FSPDGQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLAS 280
S DGQF +S S+DG + +WD +G + F+ H + VL + FS D+ + S
Sbjct: 94 ISSDGQFALSGSWDGTLRLWDLTTGTTTR--------RFVGHTKDVLSVAFSSDNRQIVS 145
Query: 281 GSQDGKIKVWRIRSGQCLRRLE-RAHSEGVTSLVFSRDGSQ--ILSTSFDSTARIHGLKS 337
GS+D IK+W G C ++ +HSE V+ + FS + S I+S +D ++ L +
Sbjct: 146 GSRDKTIKLWNTL-GVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLAN 204
Query: 338 GKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDA 397
KL GH+ Y+N + DGS + D +WDL L T L GGD
Sbjct: 205 CKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYT------LDGGDI 258
Query: 398 SVNSVHLFPKNPDHIVVCNKTS-SIYIMTLQGQVV 431
++ +P+ +C T SI I L+G+++
Sbjct: 259 ----INALCFSPNRYWLCAATGPSIKIWDLEGKII 289
Score = 68.9 bits (167), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 66/242 (27%), Positives = 107/242 (44%), Gaps = 18/242 (7%)
Query: 276 EMLASGSQDGKIKVWRIRSGQC----LRRLERAHSEGVTSLVFSRDGSQILSTSFDSTAR 331
+M+ S S+D I +W++ + +R R HS V+ +V S DG LS S+D T R
Sbjct: 52 DMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLR 111
Query: 332 IHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPP 391
+ L +G + F GH+ V F++D ++V+ S D T+K+W+ C T +
Sbjct: 112 LWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGV-CKYTVQDESH 170
Query: 392 LRGGDASVNSVHLFPKNPDHIVV-CNKTSSIYIMTLQGQVVKSFSSGKREGGDFVAACVS 450
V+ V P + + I+V C + + L +K+ G G VS
Sbjct: 171 ----SEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHT--GYLNTVTVS 224
Query: 451 PKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVI-GVTHHPHRNLL-ATYGEDCTMK 508
P G G+D + GK HL + D+I + P+R L A G ++K
Sbjct: 225 PDGSLCASGGKDGQAMLWDLNEGK--HLYTLDGGDIINALCFSPNRYWLCAATGP--SIK 280
Query: 509 LW 510
+W
Sbjct: 281 IW 282
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 33/134 (24%), Positives = 50/134 (37%), Gaps = 18/134 (13%)
Query: 207 TIKFGTKSHAECARFSPDGQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHDETV 266
T G + SPDG S DG +WD GK Y D +++
Sbjct: 209 TNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGK----HLYTLDGGDIIN---A 261
Query: 267 LCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLE--------RAHSEGVTSLVFSRDG 318
LC +R A+G IK+W + + L+ +A TSL +S DG
Sbjct: 262 LCFSPNRYWLCAATGPS---IKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADG 318
Query: 319 SQILSTSFDSTARI 332
+ + D+ R+
Sbjct: 319 QTLFAGYTDNLVRV 332
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 83.6 bits (205), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 65/260 (25%), Positives = 119/260 (45%), Gaps = 25/260 (9%)
Query: 206 HTIKFGTKSHAECARFSPDGQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHDET 265
HT+ +G S C + +VS S D + VWD +G Q M H
Sbjct: 193 HTL-YGHTSTVRCMHLHE--KRVVSGSRDATLRVWDIETG--------QCLHVLMGHVAA 241
Query: 266 VLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTS 325
V C+++ D + SG+ D +KVW + CL L+ H+ V SL F DG ++S S
Sbjct: 242 VRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQ-GHTNRVYSLQF--DGIHVVSGS 296
Query: 326 FDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQT 385
D++ R+ +++G + GH S + ++ +V+ ++D TVK+WD+K+ CLQT
Sbjct: 297 LDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDN--ILVSGNADSTVKIWDIKTGQCLQT 354
Query: 386 FKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQ-GQVVKSFSSGKREGGDF 444
+ P + ++V N + ++ + ++ + L+ G+ +++ + + G
Sbjct: 355 LQGP------NKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGG 408
Query: 445 VAACVSPKGEWIYCVGEDRN 464
V + + C RN
Sbjct: 409 VVWRIRASNTKLVCAVGSRN 428
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 73/295 (24%), Positives = 134/295 (45%), Gaps = 33/295 (11%)
Query: 218 CARFSPDGQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEM 277
C +F G +VS S D ++VW ++GK + T + H V + RD+ +
Sbjct: 124 CLQFC--GNRIVSGSDDNTLKVWSAVTGKCLR--------TLVGHTGGVWSSQM-RDN-I 171
Query: 278 LASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKS 337
+ SGS D +KVW +G+C+ L H+ V + +++S S D+T R+ +++
Sbjct: 172 IISGSTDRTLKVWNAETGECIHTL-YGHTSTVRCMHLHE--KRVVSGSRDATLRVWDIET 228
Query: 338 GKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDA 397
G+ L GH + V + DG RVV+ + D VKVWD ++ CL T +
Sbjct: 229 GQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQ---------G 277
Query: 398 SVNSVHLFPKNPDHIVVCNKTSSIYIMTLQ-GQVVKSFSSGKREGGDFVAACVSPKGEWI 456
N V+ + H+V + +SI + ++ G + + + G + + + K +
Sbjct: 278 HTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLT-----GHQSLTSGMELKDNIL 332
Query: 457 YCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVT-HHPHRNLLATYGEDCTMKLW 510
D + + ++G+ ++ K VT ++N + T +D T+KLW
Sbjct: 333 VSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLW 387
Score = 35.8 bits (81), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 47/190 (24%), Positives = 81/190 (42%), Gaps = 25/190 (13%)
Query: 326 FDSTARIHGLKSGKLLKEFRGHSSYVNDAI-FTNDGSRVVTASSDCTVKVWDLKSTDCLQ 384
D+ R LKS K+LK GH +V + F G+R+V+ S D T+KVW + CL+
Sbjct: 99 IDTNWRRGELKSPKVLK---GHDDHVITCLQFC--GNRIVSGSDDNTLKVWSAVTGKCLR 153
Query: 385 TFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTS-SIYIMTLQ-GQVVKSFSSGKREGG 442
T L G V S + D+I++ T ++ + + G+ + + G
Sbjct: 154 T------LVGHTGGVWSSQM----RDNIIISGSTDRTLKVWNAETGECIHTLY-----GH 198
Query: 443 DFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPHRNLLATYG 502
C+ + + D L + ++G+ H++ H V V + R + Y
Sbjct: 199 TSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAY- 257
Query: 503 EDCTMKLWKP 512
D +K+W P
Sbjct: 258 -DFMVKVWDP 266
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 83.2 bits (204), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 63/218 (28%), Positives = 100/218 (45%), Gaps = 27/218 (12%)
Query: 221 FSPDGQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLAS 280
S DGQF +S S+DG + +WD +G + F+ H + VL + FS D+ + S
Sbjct: 438 LSSDGQFALSGSWDGELRLWDLAAG--------VSTRRFVGHTKDVLSVAFSLDNRQIVS 489
Query: 281 GSQDGKIKVWRIRSGQCLRRLE---RAHSEGVTSLVFSRDGSQ--ILSTSFDSTARIHGL 335
S+D IK+W G+C + H + V+ + FS + Q I+S S+D T ++ L
Sbjct: 490 ASRDRTIKLWNTL-GECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNL 548
Query: 336 KSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGG 395
+ KL GH+ YV+ + DGS + D V +WDL L + +
Sbjct: 549 SNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLE-------- 600
Query: 396 DASVNSV-HLFPKNPDHIVVCNKTS-SIYIMTLQGQVV 431
NSV H +P+ +C T I I L+ + +
Sbjct: 601 ---ANSVIHALCFSPNRYWLCAATEHGIKIWDLESKSI 635
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 70/264 (26%), Positives = 112/264 (42%), Gaps = 23/264 (8%)
Query: 258 TFMMHDETVLCIEFSRD-SEMLASGSQDGKIKVWRIRS-----GQCLRRLERAHSEGVTS 311
T H + V I D ++++ S S+D I +W++ G RRL HS V
Sbjct: 377 TMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRL-TGHSHFVED 435
Query: 312 LVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCT 371
+V S DG LS S+D R+ L +G + F GH+ V F+ D ++V+AS D T
Sbjct: 436 VVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRT 495
Query: 372 VKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPD----HIVVCNKTSSIYIMTLQ 427
+K+W+ +C T GG+ + V +P+ IV + ++ + L
Sbjct: 496 IKLWNTLG-ECKYTIS-----EGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLS 549
Query: 428 GQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVI 487
++S +G G VSP G G+D + + GK L + VI
Sbjct: 550 NCKLRSTLAGHT--GYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGK--KLYSLEANSVI 605
Query: 488 -GVTHHPHRNLLATYGEDCTMKLW 510
+ P+R L E +K+W
Sbjct: 606 HALCFSPNRYWLCAATEHG-IKIW 628
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 49/196 (25%), Positives = 90/196 (45%), Gaps = 35/196 (17%)
Query: 206 HTIKFGTKSHAE---CARFSPDG--QFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFM 260
+TI G + H + C RFSP+ +VS S+D ++VW+ + KL+ T
Sbjct: 507 YTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLR--------STLA 558
Query: 261 MHDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQ 320
H V + S D + ASG +DG + +W + G+ L LE A+S + +L FS +
Sbjct: 559 GHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLE-ANSV-IHALCFSPN-RY 615
Query: 321 ILSTSFDSTARIHGLKSGKLLKEFR-------------GHSS------YVNDAIFTNDGS 361
L + + +I L+S ++++ + G ++ Y ++ DGS
Sbjct: 616 WLCAATEHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGS 675
Query: 362 RVVTASSDCTVKVWDL 377
+ + +D ++VW +
Sbjct: 676 TLFSGYTDGVIRVWGI 691
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 81.3 bits (199), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 77/322 (23%), Positives = 138/322 (42%), Gaps = 32/322 (9%)
Query: 218 CARFSPDGQFLVSCSFDGFIEVWDYLSGKL----------KKDLQYQADETFMMHDETVL 267
C +FS DG++L + + +V+ G L KD + + D +
Sbjct: 69 CVKFSNDGEYLAT-GCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIR 127
Query: 268 CIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFD 327
+ FS D + LA+G++D I++W I + + + L+ H + + SL + G +++S S D
Sbjct: 128 SVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQ-GHEQDIYSLDYFPSGDKLVSGSGD 186
Query: 328 STARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFK 387
T RI L++G+ A+ DG + S D V+VWD ++ ++
Sbjct: 187 RTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLD 246
Query: 388 PPPPLRGGDASVNSVH--LFPKNPDHIVVCNKTSSIYIMTLQGQVVKSFSSGKREG---- 441
G +SV+ +F ++ +V + S+ + LQ KS S G
Sbjct: 247 SEN--ESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEV 304
Query: 442 -----GDFVAACVSPKG-EWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVI------GV 489
DFV + + + E+I +DR + + +SG +++ H VI G
Sbjct: 305 TYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGS 364
Query: 490 THHPHRNLLATYGEDCTMKLWK 511
+ P N+ AT DC ++WK
Sbjct: 365 SLGPEYNVFATGSGDCKARIWK 386
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/173 (27%), Positives = 77/173 (44%), Gaps = 20/173 (11%)
Query: 224 DGQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQ 283
DG+++ + S D + VWD +G L + L + +E+ H ++V + F+RD + + SGS
Sbjct: 218 DGKYIAAGSLDRAVRVWDSETGFLVERLDSE-NESGTGHKDSVYSVVFTRDGQSVVSGSL 276
Query: 284 DGKIKVWRIR------------SGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTAR 331
D +K+W ++ SG C H + V S+ +++ ILS S D
Sbjct: 277 DRSVKLWNLQNANNKSDSKTPNSGTC-EVTYIGHKDFVLSVATTQNDEYILSGSKDRGVL 335
Query: 332 IHGLKSGKLLKEFRGHSSYVNDAIFTNDGSR------VVTASSDCTVKVWDLK 378
KSG L +GH + V N S T S DC ++W K
Sbjct: 336 FWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYK 388
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 80.9 bits (198), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 57/182 (31%), Positives = 87/182 (47%), Gaps = 19/182 (10%)
Query: 211 GTKSHAECARFSPDGQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFM-MHDETVLCI 269
G K +F+ DG+ L+S S D I+VW++ +G D F+ H ETV
Sbjct: 1001 GHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTG----------DYVFLQAHQETVKDF 1050
Query: 270 EFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLER---AHSEGVTSLVFSRDGSQILSTSF 326
+DS +L S S DG +KVW + +G R+ER H V S S D ++ STS
Sbjct: 1051 RLLQDSRLL-SWSFDGTVKVWNVITG----RIERDFTCHQGTVLSCAISSDATKFSSTSA 1105
Query: 327 DSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTF 386
D TA+I L E +GH+ V + F+ DG + T + +++W++ L +
Sbjct: 1106 DKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSC 1165
Query: 387 KP 388
P
Sbjct: 1166 AP 1167
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 84/165 (50%), Gaps = 11/165 (6%)
Query: 219 ARFSPDGQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEML 278
A FS DGQ + SC D ++V+ +G+ D++ H++ VLC FS D +
Sbjct: 621 ACFSQDGQRIASCGADKTLQVFKAETGEKLLDIK--------AHEDEVLCCAFSSDDSYI 672
Query: 279 ASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQIL--STSFDSTARIHGLK 336
A+ S D K+K+W +G+ + + HSE V F+ + +L + S D ++ L
Sbjct: 673 ATCSADKKVKIWDSATGKLVHTYDE-HSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLN 731
Query: 337 SGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTD 381
+ GH++ VN F+ D + + S+D T+++WD++S +
Sbjct: 732 QKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSAN 776
Score = 72.0 bits (175), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 69/314 (21%), Positives = 130/314 (41%), Gaps = 34/314 (10%)
Query: 210 FGTKSHAECARFSPDGQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHDE----- 264
FG + RFSPD + L SCS DG + +WD S +K + + F + E
Sbjct: 740 FGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVK---RFFLSSEDPPED 796
Query: 265 ---TVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFS-RDGSQ 320
V C +S D + + +++ K+ ++ I + L + H + FS D
Sbjct: 797 VEVIVKCCSWSADGDKIIVAAKN-KVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLA 855
Query: 321 ILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKST 380
+++ S + + S + + RGH S+V+ +F+ DGS +TAS D T++VW+ K
Sbjct: 856 VIALS-QYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKV 914
Query: 381 DCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQVVKSFSSGKRE 440
NS + + D + N+T + + ++G + + +G+ +
Sbjct: 915 -----------------CKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQID 957
Query: 441 ---GGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPHRNL 497
C+SP E++ ED + + ++ H+K V +
Sbjct: 958 YLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKT 1017
Query: 498 LATYGEDCTMKLWK 511
L + ED +++W
Sbjct: 1018 LISSSEDSVIQVWN 1031
Score = 69.7 bits (169), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 68/283 (24%), Positives = 120/283 (42%), Gaps = 21/283 (7%)
Query: 242 YLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRL 301
YL KK ++ + H + V FS+D + +AS D ++V++ +G+ L +
Sbjct: 594 YLEWINKKTIKNLSRLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDI 653
Query: 302 ERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGS 361
+AH + V FS D S I + S D +I +GKL+ + HS VN FTN +
Sbjct: 654 -KAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSN 712
Query: 362 RVV--TASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTS 419
++ T S+D +K+WDL +C T + G SVN P + + + C+
Sbjct: 713 HLLLATGSNDFFLKLWDLNQKECRNT------MFGHTNSVNHCRFSPDD-ELLASCSADG 765
Query: 420 SIYIMTLQGQVVKSFSSGKR---------EGGDFVAACV--SPKGEWIYCVGEDRNLYCF 468
++ + ++ + + KR E + + C S G+ I +++ L
Sbjct: 766 TLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFD 825
Query: 469 SHQSGKLEHLMKVHEKDVIGVTHHPHRNLLATYGEDCTMKLWK 511
H SG L + H + P+ +L ++LW
Sbjct: 826 IHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWN 868
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/165 (24%), Positives = 73/165 (44%), Gaps = 22/165 (13%)
Query: 221 FSPDGQFLVSCSFDGFIEVWDYLSGKLKKD----LQYQADETFMMHDETVLCIEFSRDSE 276
FSPDG ++ S D I VW+ + K+ K+ L+ + D F ++ VL ++ R +
Sbjct: 890 FSPDGSSFLTASDDQTIRVWE--TKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQ 947
Query: 277 MLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLK 336
++A ++GQ + L A V+ S + D +I L
Sbjct: 948 LIAG------------KTGQ-IDYLPEAQ---VSCCCLSPHLEYVAFGDEDGAIKIIELP 991
Query: 337 SGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTD 381
+ ++ GH V FT DG ++++S D ++VW+ ++ D
Sbjct: 992 NNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGD 1036
Score = 35.4 bits (80), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 44/95 (46%), Gaps = 2/95 (2%)
Query: 418 TSSIYIMTLQGQVVKSFSS-GKREGGDFVA-ACVSPKGEWIYCVGEDRNLYCFSHQSGKL 475
T +Y+ + + +K+ S R D V AC S G+ I G D+ L F ++G+
Sbjct: 590 TGRLYLEWINKKTIKNLSRLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEK 649
Query: 476 EHLMKVHEKDVIGVTHHPHRNLLATYGEDCTMKLW 510
+K HE +V+ + +AT D +K+W
Sbjct: 650 LLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIW 684
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine
Apaf-1
Length = 1256
Score = 80.9 bits (198), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 57/182 (31%), Positives = 87/182 (47%), Gaps = 19/182 (10%)
Query: 211 GTKSHAECARFSPDGQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFM-MHDETVLCI 269
G K +F+ DG+ L+S S D I+VW++ +G D F+ H ETV
Sbjct: 1008 GHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTG----------DYVFLQAHQETVKDF 1057
Query: 270 EFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLER---AHSEGVTSLVFSRDGSQILSTSF 326
+DS +L S S DG +KVW + +G R+ER H V S S D ++ STS
Sbjct: 1058 RLLQDSRLL-SWSFDGTVKVWNVITG----RIERDFTCHQGTVLSCAISSDATKFSSTSA 1112
Query: 327 DSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTF 386
D TA+I L E +GH+ V + F+ DG + T + +++W++ L +
Sbjct: 1113 DKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSC 1172
Query: 387 KP 388
P
Sbjct: 1173 AP 1174
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 84/165 (50%), Gaps = 11/165 (6%)
Query: 219 ARFSPDGQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEML 278
A FS DGQ + SC D ++V+ +G+ D++ H++ VLC FS D +
Sbjct: 628 ACFSQDGQRIASCGADKTLQVFKAETGEKLLDIK--------AHEDEVLCCAFSSDDSYI 679
Query: 279 ASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQIL--STSFDSTARIHGLK 336
A+ S D K+K+W +G+ + + HSE V F+ + +L + S D ++ L
Sbjct: 680 ATCSADKKVKIWDSATGKLVHTYDE-HSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLN 738
Query: 337 SGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTD 381
+ GH++ VN F+ D + + S+D T+++WD++S +
Sbjct: 739 QKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSAN 783
Score = 72.0 bits (175), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 69/314 (21%), Positives = 130/314 (41%), Gaps = 34/314 (10%)
Query: 210 FGTKSHAECARFSPDGQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHDE----- 264
FG + RFSPD + L SCS DG + +WD S +K + + F + E
Sbjct: 747 FGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVK---RFFLSSEDPPED 803
Query: 265 ---TVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFS-RDGSQ 320
V C +S D + + +++ K+ ++ I + L + H + FS D
Sbjct: 804 VEVIVKCCSWSADGDKIIVAAKN-KVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLA 862
Query: 321 ILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKST 380
+++ S + + S + + RGH S+V+ +F+ DGS +TAS D T++VW+ K
Sbjct: 863 VIALS-QYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKV 921
Query: 381 DCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQVVKSFSSGKRE 440
NS + + D + N+T + + ++G + + +G+ +
Sbjct: 922 -----------------CKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQID 964
Query: 441 ---GGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPHRNL 497
C+SP E++ ED + + ++ H+K V +
Sbjct: 965 YLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKT 1024
Query: 498 LATYGEDCTMKLWK 511
L + ED +++W
Sbjct: 1025 LISSSEDSVIQVWN 1038
Score = 69.7 bits (169), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 68/283 (24%), Positives = 120/283 (42%), Gaps = 21/283 (7%)
Query: 242 YLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRL 301
YL KK ++ + H + V FS+D + +AS D ++V++ +G+ L +
Sbjct: 601 YLEWINKKTIKNLSRLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDI 660
Query: 302 ERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGS 361
+AH + V FS D S I + S D +I +GKL+ + HS VN FTN +
Sbjct: 661 -KAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSN 719
Query: 362 RVV--TASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTS 419
++ T S+D +K+WDL +C T + G SVN P + + + C+
Sbjct: 720 HLLLATGSNDFFLKLWDLNQKECRNT------MFGHTNSVNHCRFSPDD-ELLASCSADG 772
Query: 420 SIYIMTLQGQVVKSFSSGKR---------EGGDFVAACV--SPKGEWIYCVGEDRNLYCF 468
++ + ++ + + KR E + + C S G+ I +++ L
Sbjct: 773 TLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFD 832
Query: 469 SHQSGKLEHLMKVHEKDVIGVTHHPHRNLLATYGEDCTMKLWK 511
H SG L + H + P+ +L ++LW
Sbjct: 833 IHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWN 875
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/165 (24%), Positives = 73/165 (44%), Gaps = 22/165 (13%)
Query: 221 FSPDGQFLVSCSFDGFIEVWDYLSGKLKKD----LQYQADETFMMHDETVLCIEFSRDSE 276
FSPDG ++ S D I VW+ + K+ K+ L+ + D F ++ VL ++ R +
Sbjct: 897 FSPDGSSFLTASDDQTIRVWE--TKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQ 954
Query: 277 MLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLK 336
++A ++GQ + L A V+ S + D +I L
Sbjct: 955 LIAG------------KTGQ-IDYLPEAQ---VSCCCLSPHLEYVAFGDEDGAIKIIELP 998
Query: 337 SGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTD 381
+ ++ GH V FT DG ++++S D ++VW+ ++ D
Sbjct: 999 NNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGD 1043
Score = 35.4 bits (80), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 44/95 (46%), Gaps = 2/95 (2%)
Query: 418 TSSIYIMTLQGQVVKSFSS-GKREGGDFVA-ACVSPKGEWIYCVGEDRNLYCFSHQSGKL 475
T +Y+ + + +K+ S R D V AC S G+ I G D+ L F ++G+
Sbjct: 597 TGRLYLEWINKKTIKNLSRLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEK 656
Query: 476 EHLMKVHEKDVIGVTHHPHRNLLATYGEDCTMKLW 510
+K HE +V+ + +AT D +K+W
Sbjct: 657 LLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIW 691
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 78.2 bits (191), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 56/171 (32%), Positives = 92/171 (53%), Gaps = 9/171 (5%)
Query: 216 AECARFSPDGQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDS 275
A FSPD Q+L + + G + ++ SGK + L + + +L I +S D
Sbjct: 125 AWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRG--------KFILSIAYSPDG 176
Query: 276 EMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGL 335
+ LASG+ DG I ++ I +G+ L LE H+ + SL FS D +++ S D +I+ +
Sbjct: 177 KYLASGAIDGIINIFDIATGKLLHTLE-GHAMPIRSLTFSPDSQLLVTASDDGYIKIYDV 235
Query: 336 KSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTF 386
+ L GH+S+V + F D + V++SSD +VKVWD+ + C+ TF
Sbjct: 236 QHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTF 286
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 77/157 (49%), Gaps = 9/157 (5%)
Query: 230 SCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQDGKIKV 289
S S D I +WD +GK K + + + + FS DS+ LA+G+ GK+ +
Sbjct: 97 SSSLDAHIRLWDLENGKQIKSIDAGPVDAWTL--------AFSPDSQYLATGTHVGKVNI 148
Query: 290 WRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRGHSS 349
+ + SG+ L+ + + S+ +S DG + S + D I + +GKLL GH+
Sbjct: 149 FGVESGKKEYSLD-TRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAM 207
Query: 350 YVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTF 386
+ F+ D +VTAS D +K++D++ + T
Sbjct: 208 PIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTL 244
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 78/156 (50%), Gaps = 9/156 (5%)
Query: 221 FSPDGQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLAS 280
+SPDG++L S + DG I ++D +GKL L+ H + + FS DS++L +
Sbjct: 172 YSPDGKYLASGAIDGIINIFDIATGKLLHTLE--------GHAMPIRSLTFSPDSQLLVT 223
Query: 281 GSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKL 340
S DG IK++ ++ L H+ V ++ F D + +S+S D + ++ + +
Sbjct: 224 ASDDGYIKIYDVQHANLAGTLS-GHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTC 282
Query: 341 LKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWD 376
+ F H V + +GS++V+ D + ++D
Sbjct: 283 VHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYD 318
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 57/260 (21%), Positives = 93/260 (35%), Gaps = 68/260 (26%)
Query: 262 HDETVLCIEFS----RDSEMLASGSQDGKIKVWRIRSGQC-LRRLERAHSEGVTSLVFSR 316
HD+ + + + +SE + +GS D +KVW+ R + L+ H GV S+ S
Sbjct: 31 HDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISH 90
Query: 317 DGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWD 376
S+S D+ R+ L++GK +K DA V W
Sbjct: 91 TLPIAASSSLDAHIRLWDLENGKQIKSI--------DA---------------GPVDAWT 127
Query: 377 LKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQVVKSFSS 436
L F P V V++F S
Sbjct: 128 L-------AFSPDSQYLATGTHVGKVNIF---------------------------GVES 153
Query: 437 GKRE------GGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVT 490
GK+E G ++ SP G+++ D + F +GKL H ++ H + +T
Sbjct: 154 GKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLT 213
Query: 491 HHPHRNLLATYGEDCTMKLW 510
P LL T +D +K++
Sbjct: 214 FSPDSQLLVTASDDGYIKIY 233
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 77.8 bits (190), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 57/229 (24%), Positives = 102/229 (44%), Gaps = 34/229 (14%)
Query: 209 KFGT-----KSHAECAR---FSPDGQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFM 260
KFG K H+ + + DG + +S S+D + +WD +G+ YQ F+
Sbjct: 53 KFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGE-----TYQ---RFV 104
Query: 261 MHDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVF------ 314
H V+ ++ + + M+ SGS+D IKVW I+ GQCL L H++ V+ +
Sbjct: 105 GHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATL-LGHNDWVSQVRVVPNEKA 162
Query: 315 SRDGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKV 374
D I+S D + L ++ +F GH+S +N + DG+ + +A D + +
Sbjct: 163 DDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIML 222
Query: 375 WDLKSTDCLQTFKP----------PPPLRGGDASVNSVHLFPKNPDHIV 413
W+L + + T P A+ + +F +P ++V
Sbjct: 223 WNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLV 271
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 58/237 (24%), Positives = 102/237 (43%), Gaps = 27/237 (11%)
Query: 276 EMLASGSQDGKIKVWRI-----RSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTA 330
+L S S+D + W++ + G +R + HS V + DG+ LS S+D T
Sbjct: 31 NLLLSASRDKTLISWKLTGDDQKFGVPVRSF-KGHSHIVQDCTLTADGAYALSASWDKTL 89
Query: 331 RIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPP 390
R+ + +G+ + F GH S V S +++ S D T+KVW +K CL T
Sbjct: 90 RLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKG-QCLAT----- 143
Query: 391 PLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQVVKSFSSGKRE-GGDFVA--- 446
L G + V+ V + P + S I ++VK+++ + + DF+
Sbjct: 144 -LLGHNDWVSQVRVVPNEK-----ADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNS 197
Query: 447 ----ACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPHRNLLA 499
SP G I G+D + ++ + K + + + +V + P+R LA
Sbjct: 198 NINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQD-EVFSLAFSPNRYWLA 253
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 59/225 (26%), Positives = 100/225 (44%), Gaps = 18/225 (8%)
Query: 297 CLRRLERAHSEGVTSLVFSRDGSQIL-STSFDSTARIHGL-----KSGKLLKEFRGHSSY 350
LR H+ VTSL S +L S S D T L K G ++ F+GHS
Sbjct: 8 VLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHI 67
Query: 351 VNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPD 410
V D T DG+ ++AS D T+++WD+ + + Q F G + V SV + K
Sbjct: 68 VQDCTLTADGAYALSASWDKTLRLWDVATGETYQRF------VGHKSDVMSVDI-DKKAS 120
Query: 411 HIVVCNKTSSIYIMTLQGQVVKSFSSGKREGGDFVAACVSPKGE----WIYCVGEDRNLY 466
I+ ++ +I + T++GQ + + G + V + K + I G D+ +
Sbjct: 121 MIISGSRDKTIKVWTIKGQCLATLL-GHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVK 179
Query: 467 CFSHQSGKLEHLMKVHEKDVIGVTHHPHRNLLATYGEDCTMKLWK 511
++ ++E H ++ +T P L+A+ G+D + LW
Sbjct: 180 AWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWN 224
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 36/166 (21%), Positives = 74/166 (44%), Gaps = 19/166 (11%)
Query: 224 DGQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQ 283
D ++S D ++ W+ Q+Q + F+ H+ + + S D ++AS +
Sbjct: 165 DSVTIISAGNDKMVKAWNLN--------QFQIEADFIGHNSNINTLTASPDGTLIASAGK 216
Query: 284 DGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLK- 342
DG+I +W + + + + L A E V SL FS + L+ + + ++ L L+
Sbjct: 217 DGEIMLWNLAAKKAMYTLS-AQDE-VFSLAFSPN-RYWLAAATATGIKVFSLDPQYLVDD 273
Query: 343 ---EFRGHSS----YVNDAIFTNDGSRVVTASSDCTVKVWDLKSTD 381
EF G+S + ++ DG + +D ++VW + + +
Sbjct: 274 LRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMTAN 319
Score = 35.8 bits (81), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 52/130 (40%), Gaps = 17/130 (13%)
Query: 210 FGTKSHAECARFSPDGQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCI 269
G S+ SPDG + S DG I +W+ + K L Q DE F +
Sbjct: 193 IGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ-DEVF--------SL 243
Query: 270 EFSRDSEMLASGSQDGKIKVWRIRSGQCLRRL-------ERAHSEGVTSLVFSRDGSQIL 322
FS + LA+ + G IKV+ + + L +A SL +S DG +
Sbjct: 244 AFSPNRYWLAAATATG-IKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLF 302
Query: 323 STSFDSTARI 332
+ D+ R+
Sbjct: 303 AGYTDNVIRV 312
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 57/229 (24%), Positives = 102/229 (44%), Gaps = 34/229 (14%)
Query: 209 KFGT-----KSHAECAR---FSPDGQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFM 260
KFG K H+ + + DG + +S S+D + +WD +G+ YQ F+
Sbjct: 47 KFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGE-----TYQ---RFV 98
Query: 261 MHDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVF------ 314
H V+ ++ + + M+ SGS+D IKVW I+ GQCL L H++ V+ +
Sbjct: 99 GHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATL-LGHNDWVSQVRVVPNEKA 156
Query: 315 SRDGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKV 374
D I+S D + L ++ +F GH+S +N + DG+ + +A D + +
Sbjct: 157 DDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIML 216
Query: 375 WDLKSTDCLQTFKP----------PPPLRGGDASVNSVHLFPKNPDHIV 413
W+L + + T P A+ + +F +P ++V
Sbjct: 217 WNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLV 265
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 58/237 (24%), Positives = 102/237 (43%), Gaps = 27/237 (11%)
Query: 276 EMLASGSQDGKIKVWRI-----RSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTA 330
+L S S+D + W++ + G +R + HS V + DG+ LS S+D T
Sbjct: 25 NLLLSASRDKTLISWKLTGDDQKFGVPVRSF-KGHSHIVQDCTLTADGAYALSASWDKTL 83
Query: 331 RIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPP 390
R+ + +G+ + F GH S V S +++ S D T+KVW +K CL T
Sbjct: 84 RLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKG-QCLAT----- 137
Query: 391 PLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQVVKSFSSGKRE-GGDFVA--- 446
L G + V+ V + P + S I ++VK+++ + + DF+
Sbjct: 138 -LLGHNDWVSQVRVVPNEK-----ADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNS 191
Query: 447 ----ACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPHRNLLA 499
SP G I G+D + ++ + K + + + +V + P+R LA
Sbjct: 192 NINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQD-EVFSLAFSPNRYWLA 247
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 59/225 (26%), Positives = 100/225 (44%), Gaps = 18/225 (8%)
Query: 297 CLRRLERAHSEGVTSLVFSRDGSQIL-STSFDSTARIHGL-----KSGKLLKEFRGHSSY 350
LR H+ VTSL S +L S S D T L K G ++ F+GHS
Sbjct: 2 VLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHI 61
Query: 351 VNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPD 410
V D T DG+ ++AS D T+++WD+ + + Q F G + V SV + K
Sbjct: 62 VQDCTLTADGAYALSASWDKTLRLWDVATGETYQRF------VGHKSDVMSVDI-DKKAS 114
Query: 411 HIVVCNKTSSIYIMTLQGQVVKSFSSGKREGGDFVAACVSPKGE----WIYCVGEDRNLY 466
I+ ++ +I + T++GQ + + G + V + K + I G D+ +
Sbjct: 115 MIISGSRDKTIKVWTIKGQCLATLL-GHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVK 173
Query: 467 CFSHQSGKLEHLMKVHEKDVIGVTHHPHRNLLATYGEDCTMKLWK 511
++ ++E H ++ +T P L+A+ G+D + LW
Sbjct: 174 AWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWN 218
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 36/166 (21%), Positives = 74/166 (44%), Gaps = 19/166 (11%)
Query: 224 DGQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQ 283
D ++S D ++ W+ Q+Q + F+ H+ + + S D ++AS +
Sbjct: 159 DSVTIISAGNDKMVKAWNLN--------QFQIEADFIGHNSNINTLTASPDGTLIASAGK 210
Query: 284 DGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLK- 342
DG+I +W + + + + L A E V SL FS + L+ + + ++ L L+
Sbjct: 211 DGEIMLWNLAAKKAMYTLS-AQDE-VFSLAFSPN-RYWLAAATATGIKVFSLDPQYLVDD 267
Query: 343 ---EFRGHSS----YVNDAIFTNDGSRVVTASSDCTVKVWDLKSTD 381
EF G+S + ++ DG + +D ++VW + + +
Sbjct: 268 LRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMTAN 313
Score = 35.8 bits (81), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 52/130 (40%), Gaps = 17/130 (13%)
Query: 210 FGTKSHAECARFSPDGQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCI 269
G S+ SPDG + S DG I +W+ + K L Q DE F +
Sbjct: 187 IGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ-DEVF--------SL 237
Query: 270 EFSRDSEMLASGSQDGKIKVWRIRSGQCLRRL-------ERAHSEGVTSLVFSRDGSQIL 322
FS + LA+ + G IKV+ + + L +A SL +S DG +
Sbjct: 238 AFSPNRYWLAAATATG-IKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLF 296
Query: 323 STSFDSTARI 332
+ D+ R+
Sbjct: 297 AGYTDNVIRV 306
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 57/229 (24%), Positives = 102/229 (44%), Gaps = 34/229 (14%)
Query: 209 KFGT-----KSHAECAR---FSPDGQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFM 260
KFG K H+ + + DG + +S S+D + +WD +G+ YQ F+
Sbjct: 53 KFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGE-----TYQ---RFV 104
Query: 261 MHDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVF------ 314
H V+ ++ + + M+ SGS+D IKVW I+ GQCL L H++ V+ +
Sbjct: 105 GHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATL-LGHNDWVSQVRVVPNEKA 162
Query: 315 SRDGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKV 374
D I+S D + L ++ +F GH+S +N + DG+ + +A D + +
Sbjct: 163 DDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIML 222
Query: 375 WDLKSTDCLQTFKP----------PPPLRGGDASVNSVHLFPKNPDHIV 413
W+L + + T P A+ + +F +P ++V
Sbjct: 223 WNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLV 271
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 59/225 (26%), Positives = 100/225 (44%), Gaps = 18/225 (8%)
Query: 297 CLRRLERAHSEGVTSLVFSRDGSQIL-STSFDSTARIHGL-----KSGKLLKEFRGHSSY 350
LR H+ VTSL S +L S S D T L K G ++ F+GHS
Sbjct: 8 VLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHI 67
Query: 351 VNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPD 410
V D T DG+ ++AS D T+++WD+ + + Q F G + V SV + K
Sbjct: 68 VQDCTLTADGAYALSASWDKTLRLWDVATGETYQRF------VGHKSDVMSVDI-DKKAS 120
Query: 411 HIVVCNKTSSIYIMTLQGQVVKSFSSGKREGGDFVAACVSPKGE----WIYCVGEDRNLY 466
I+ ++ +I + T++GQ + + G + V + K + I G D+ +
Sbjct: 121 MIISGSRDKTIKVWTIKGQCLATLL-GHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVK 179
Query: 467 CFSHQSGKLEHLMKVHEKDVIGVTHHPHRNLLATYGEDCTMKLWK 511
++ ++E H ++ +T P L+A+ G+D + LW
Sbjct: 180 AWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWN 224
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 58/237 (24%), Positives = 102/237 (43%), Gaps = 27/237 (11%)
Query: 276 EMLASGSQDGKIKVWRI-----RSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTA 330
+L S S+D + W++ + G +R + HS V + DG+ LS S+D T
Sbjct: 31 NLLLSASRDKTLISWKLTGDDQKFGVPVRSF-KGHSHIVQDCTLTADGAYALSASWDKTL 89
Query: 331 RIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPP 390
R+ + +G+ + F GH S V S +++ S D T+KVW +K CL T
Sbjct: 90 RLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKG-QCLAT----- 143
Query: 391 PLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQVVKSFSSGKRE-GGDFVA--- 446
L G + V+ V + P + S I ++VK+++ + + DF+
Sbjct: 144 -LLGHNDWVSQVRVVPNEK-----ADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNS 197
Query: 447 ----ACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPHRNLLA 499
SP G I G+D + ++ + K + + + +V + P+R LA
Sbjct: 198 NINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQD-EVFSLAFSPNRYWLA 253
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/166 (21%), Positives = 75/166 (45%), Gaps = 19/166 (11%)
Query: 224 DGQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQ 283
D ++S D ++ W+ Q+Q + F+ H+ + + S D ++AS +
Sbjct: 165 DSVTIISAGNDKMVKAWNLN--------QFQIEADFIGHNSNINTLTASPDGTLIASAGK 216
Query: 284 DGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLK- 342
DG+I +W + + + + L A E V SL FS + L+ + + ++ L L+
Sbjct: 217 DGEIMLWNLAAKKAMYTLS-AQDE-VFSLAFSPN-RYWLAAATATGIKVFSLDPQYLVDD 273
Query: 343 ---EFRGHSS----YVNDAIFTNDGSRVVTASSDCTVKVWDLKSTD 381
EF G+S+ + ++ DG + +D ++VW + + +
Sbjct: 274 LRPEFAGYSAAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMTAN 319
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 51/130 (39%), Gaps = 17/130 (13%)
Query: 210 FGTKSHAECARFSPDGQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCI 269
G S+ SPDG + S DG I +W+ + K L Q DE F +
Sbjct: 193 IGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ-DEVF--------SL 243
Query: 270 EFSRDSEMLASGSQDGKIKVWRIRSGQCLRRL-------ERAHSEGVTSLVFSRDGSQIL 322
FS + LA+ + G IKV+ + + L A SL +S DG +
Sbjct: 244 AFSPNRYWLAAATATG-IKVFSLDPQYLVDDLRPEFAGYSAAAEPHAVSLAWSADGQTLF 302
Query: 323 STSFDSTARI 332
+ D+ R+
Sbjct: 303 AGYTDNVIRV 312
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 57/229 (24%), Positives = 102/229 (44%), Gaps = 34/229 (14%)
Query: 209 KFGT-----KSHAECAR---FSPDGQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFM 260
KFG K H+ + + DG + +S S+D + +WD +G+ YQ F+
Sbjct: 53 KFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGE-----TYQ---RFV 104
Query: 261 MHDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVF------ 314
H V+ ++ + + M+ SGS+D IKVW I+ GQCL L H++ V+ +
Sbjct: 105 GHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATL-LGHNDWVSQVRVVPNEKA 162
Query: 315 SRDGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKV 374
D I+S D + L ++ +F GH+S +N + DG+ + +A D + +
Sbjct: 163 DDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIML 222
Query: 375 WDLKSTDCLQTFKP----------PPPLRGGDASVNSVHLFPKNPDHIV 413
W+L + + T P A+ + +F +P ++V
Sbjct: 223 WNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLV 271
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 58/237 (24%), Positives = 102/237 (43%), Gaps = 27/237 (11%)
Query: 276 EMLASGSQDGKIKVWRI-----RSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTA 330
+L S S+D + W++ + G +R + HS V + DG+ LS S+D T
Sbjct: 31 NLLLSASRDKTLISWKLTGDDQKFGVPVRSF-KGHSHIVQDCTLTADGAYALSASWDKTL 89
Query: 331 RIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPP 390
R+ + +G+ + F GH S V S +++ S D T+KVW +K CL T
Sbjct: 90 RLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKG-QCLAT----- 143
Query: 391 PLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQVVKSFSSGKRE-GGDFVA--- 446
L G + V+ V + P + S I ++VK+++ + + DF+
Sbjct: 144 -LLGHNDWVSQVRVVPNEK-----ADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNS 197
Query: 447 ----ACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPHRNLLA 499
SP G I G+D + ++ + K + + + +V + P+R LA
Sbjct: 198 NINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQD-EVFSLAFSPNRYWLA 253
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 59/225 (26%), Positives = 100/225 (44%), Gaps = 18/225 (8%)
Query: 297 CLRRLERAHSEGVTSLVFSRDGSQIL-STSFDSTARIHGL-----KSGKLLKEFRGHSSY 350
LR H+ VTSL S +L S S D T L K G ++ F+GHS
Sbjct: 8 VLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHI 67
Query: 351 VNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPD 410
V D T DG+ ++AS D T+++WD+ + + Q F G + V SV + K
Sbjct: 68 VQDCTLTADGAYALSASWDKTLRLWDVATGETYQRF------VGHKSDVMSVDI-DKKAS 120
Query: 411 HIVVCNKTSSIYIMTLQGQVVKSFSSGKREGGDFVAACVSPKGE----WIYCVGEDRNLY 466
I+ ++ +I + T++GQ + + G + V + K + I G D+ +
Sbjct: 121 MIISGSRDKTIKVWTIKGQCLATLL-GHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVK 179
Query: 467 CFSHQSGKLEHLMKVHEKDVIGVTHHPHRNLLATYGEDCTMKLWK 511
++ ++E H ++ +T P L+A+ G+D + LW
Sbjct: 180 AWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWN 224
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 36/166 (21%), Positives = 74/166 (44%), Gaps = 19/166 (11%)
Query: 224 DGQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQ 283
D ++S D ++ W+ Q+Q + F+ H+ + + S D ++AS +
Sbjct: 165 DSVTIISAGNDKMVKAWNLN--------QFQIEADFIGHNSNINTLTASPDGTLIASAGK 216
Query: 284 DGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLK- 342
DG+I +W + + + + L A E V SL FS + L+ + + ++ L L+
Sbjct: 217 DGEIMLWNLAAKKAMYTLS-AQDE-VFSLAFSPN-RYWLAAATATGIKVFSLDPQYLVDD 273
Query: 343 ---EFRGHSS----YVNDAIFTNDGSRVVTASSDCTVKVWDLKSTD 381
EF G+S + ++ DG + +D ++VW + + +
Sbjct: 274 LRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMTAN 319
Score = 35.8 bits (81), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 52/130 (40%), Gaps = 17/130 (13%)
Query: 210 FGTKSHAECARFSPDGQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCI 269
G S+ SPDG + S DG I +W+ + K L Q DE F +
Sbjct: 193 IGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ-DEVF--------SL 243
Query: 270 EFSRDSEMLASGSQDGKIKVWRIRSGQCLRRL-------ERAHSEGVTSLVFSRDGSQIL 322
FS + LA+ + G IKV+ + + L +A SL +S DG +
Sbjct: 244 AFSPNRYWLAAATATG-IKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLF 302
Query: 323 STSFDSTARI 332
+ D+ R+
Sbjct: 303 AGYTDNVIRV 312
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 57/229 (24%), Positives = 102/229 (44%), Gaps = 34/229 (14%)
Query: 209 KFGT-----KSHAECAR---FSPDGQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFM 260
KFG K H+ + + DG + +S S+D + +WD +G+ YQ F+
Sbjct: 53 KFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGE-----TYQ---RFV 104
Query: 261 MHDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVF------ 314
H V+ ++ + + M+ SGS+D IKVW I+ GQCL L H++ V+ +
Sbjct: 105 GHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATL-LGHNDWVSQVRVVPNEKA 162
Query: 315 SRDGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKV 374
D I+S D + L ++ +F GH+S +N + DG+ + +A D + +
Sbjct: 163 DDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIML 222
Query: 375 WDLKSTDCLQTFKP----------PPPLRGGDASVNSVHLFPKNPDHIV 413
W+L + + T P A+ + +F +P ++V
Sbjct: 223 WNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLV 271
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 58/237 (24%), Positives = 102/237 (43%), Gaps = 27/237 (11%)
Query: 276 EMLASGSQDGKIKVWRI-----RSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTA 330
+L S S+D + W++ + G +R + HS V + DG+ LS S+D T
Sbjct: 31 NLLLSASRDKTLISWKLTGDDQKFGVPVRSF-KGHSHIVQDCTLTADGAYALSASWDKTL 89
Query: 331 RIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPP 390
R+ + +G+ + F GH S V S +++ S D T+KVW +K CL T
Sbjct: 90 RLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKG-QCLAT----- 143
Query: 391 PLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQVVKSFSSGKRE-GGDFVA--- 446
L G + V+ V + P + S I ++VK+++ + + DF+
Sbjct: 144 -LLGHNDWVSQVRVVPNEK-----ADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNS 197
Query: 447 ----ACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPHRNLLA 499
SP G I G+D + ++ + K + + + +V + P+R LA
Sbjct: 198 NINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQD-EVFSLAFSPNRYWLA 253
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 59/225 (26%), Positives = 100/225 (44%), Gaps = 18/225 (8%)
Query: 297 CLRRLERAHSEGVTSLVFSRDGSQIL-STSFDSTARIHGL-----KSGKLLKEFRGHSSY 350
LR H+ VTSL S +L S S D T L K G ++ F+GHS
Sbjct: 8 VLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHI 67
Query: 351 VNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPD 410
V D T DG+ ++AS D T+++WD+ + + Q F G + V SV + K
Sbjct: 68 VQDCTLTADGAYALSASWDKTLRLWDVATGETYQRF------VGHKSDVMSVDI-DKKAS 120
Query: 411 HIVVCNKTSSIYIMTLQGQVVKSFSSGKREGGDFVAACVSPKGE----WIYCVGEDRNLY 466
I+ ++ +I + T++GQ + + G + V + K + I G D+ +
Sbjct: 121 MIISGSRDKTIKVWTIKGQCLATLL-GHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVK 179
Query: 467 CFSHQSGKLEHLMKVHEKDVIGVTHHPHRNLLATYGEDCTMKLWK 511
++ ++E H ++ +T P L+A+ G+D + LW
Sbjct: 180 AWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWN 224
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 36/160 (22%), Positives = 71/160 (44%), Gaps = 19/160 (11%)
Query: 224 DGQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQ 283
D ++S D ++ W+ Q+Q + F+ H+ + + S D ++AS +
Sbjct: 165 DSVTIISAGNDKMVKAWNLN--------QFQIEADFIGHNSNINTLTASPDGTLIASAGK 216
Query: 284 DGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLK- 342
DG+I +W + + + + L A E V SL FS + L+ + + ++ L L+
Sbjct: 217 DGEIMLWNLAAKKAMYTLS-AQDE-VFSLAFSPN-RYWLAAATATGIKVFSLDPQYLVDD 273
Query: 343 ---EFRGHSS----YVNDAIFTNDGSRVVTASSDCTVKVW 375
EF G+S + ++ DG + +D ++VW
Sbjct: 274 LRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVW 313
Score = 35.4 bits (80), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 52/130 (40%), Gaps = 17/130 (13%)
Query: 210 FGTKSHAECARFSPDGQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCI 269
G S+ SPDG + S DG I +W+ + K L Q DE F +
Sbjct: 193 IGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ-DEVF--------SL 243
Query: 270 EFSRDSEMLASGSQDGKIKVWRIRSGQCLRRL-------ERAHSEGVTSLVFSRDGSQIL 322
FS + LA+ + G IKV+ + + L +A SL +S DG +
Sbjct: 244 AFSPNRYWLAAATATG-IKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLF 302
Query: 323 STSFDSTARI 332
+ D+ R+
Sbjct: 303 AGYTDNVIRV 312
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 76.3 bits (186), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 65/259 (25%), Positives = 114/259 (44%), Gaps = 24/259 (9%)
Query: 208 IKFGTKSHAECARFSPDGQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHDETVL 267
I + T++ C SP Q++ +G IE+ + ++ ++ ++ H +TV
Sbjct: 962 IDYLTEAQVSCCCLSPHLQYIAFGDENGAIEILELVNNRIF--------QSRFQHKKTVW 1013
Query: 268 CIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFD 327
I+F+ D + L S S D +I+VW + +C+ R H E V ++ S++LS SFD
Sbjct: 1014 HIQFTADEKTLISSSDDAEIQVWNWQLDKCI--FLRGHQETVKDFRLLKN-SRLLSWSFD 1070
Query: 328 STARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFK 387
T ++ + +G K+F H V ++D ++ + S+D T K+W S D L
Sbjct: 1071 GTVKVWNIITGNKEKDFVCHQGTVLSCDISHDATKFSSTSADKTAKIW---SFDLLL--- 1124
Query: 388 PPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTL-QGQVVK-----SFSSGKREG 441
P LRG + V F + + + I I + G+++ S G
Sbjct: 1125 PLHELRGHNGCVR-CSAFSVDSTLLATGDDNGEIRIWNVSNGELLHLCAPLSEEGAATHG 1183
Query: 442 GDFVAACVSPKGEWIYCVG 460
G C SP G+ + G
Sbjct: 1184 GWVTDLCFSPDGKMLISAG 1202
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 50/165 (30%), Positives = 83/165 (50%), Gaps = 11/165 (6%)
Query: 219 ARFSPDGQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEML 278
A FS DGQ + SC D ++V+ +G+ K L+ +A H++ VLC FS D +
Sbjct: 627 ACFSEDGQRIASCGADKTLQVFKAETGE--KLLEIKA------HEDEVLCCAFSTDDRFI 678
Query: 279 ASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQIL--STSFDSTARIHGLK 336
A+ S D K+K+W +G+ + + HSE V F+ +L + S D ++ L
Sbjct: 679 ATCSVDKKVKIWNSMTGELVHTYDE-HSEQVNCCHFTNSSHHLLLATGSSDCFLKLWDLN 737
Query: 337 SGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTD 381
+ GH++ VN F+ D + + S+D T+K+WD S +
Sbjct: 738 QKECRNTMFGHTNSVNHCRFSPDDKLLASCSADGTLKLWDATSAN 782
Score = 69.3 bits (168), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 50/169 (29%), Positives = 78/169 (46%), Gaps = 9/169 (5%)
Query: 242 YLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRL 301
YL KK++ + H + V FS D + +AS D ++V++ +G+ L +
Sbjct: 600 YLEWINKKNITNLSRLVVRPHTDAVYHACFSEDGQRIASCGADKTLQVFKAETGEKLLEI 659
Query: 302 ERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGS 361
+AH + V FS D I + S D +I +G+L+ + HS VN FTN
Sbjct: 660 -KAHEDEVLCCAFSTDDRFIATCSVDKKVKIWNSMTGELVHTYDEHSEQVNCCHFTNSSH 718
Query: 362 RVV--TASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKN 408
++ T SSDC +K+WDL +C T + G SVN P +
Sbjct: 719 HLLLATGSSDCFLKLWDLNQKECRNT------MFGHTNSVNHCRFSPDD 761
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 80/177 (45%), Gaps = 12/177 (6%)
Query: 210 FGTKSHAECARFSPDGQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHDE----- 264
FG + RFSPD + L SCS DG +++WD S +K + + F ++ E
Sbjct: 746 FGHTNSVNHCRFSPDDKLLASCSADGTLKLWDATSANERKSINVKQ---FFLNLEDPQED 802
Query: 265 ---TVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQI 321
V C +S D + +++ KI ++ I + L + H + FS
Sbjct: 803 MEVIVKCCSWSADGARIMVAAKN-KIFLFDIHTSGLLGEIHTGHHSTIQYCDFSPQNHLA 861
Query: 322 LSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLK 378
+ + S + + RGH S+V+ +F+ DGS +T+S D T+++W+ K
Sbjct: 862 VVALSQYCVELWNTDSRSKVADCRGHLSWVHGVMFSPDGSSFLTSSDDQTIRLWETK 918
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 76/167 (45%), Gaps = 24/167 (14%)
Query: 218 CARFSPDGQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSE- 276
C FS D +F+ +CS D +++W+ ++G+L T+ H E V C F+ S
Sbjct: 668 CCAFSTDDRFIATCSVDKKVKIWNSMTGELV--------HTYDEHSEQVNCCHFTNSSHH 719
Query: 277 -MLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGL 335
+LA+GS D +K+W + +C R H+ V FS D + S S D T ++
Sbjct: 720 LLLATGSSDCFLKLWDLNQKEC-RNTMFGHTNSVNHCRFSPDDKLLASCSADGTLKLWDA 778
Query: 336 KSGKLLKEFRGHSSYVN--------DAI-----FTNDGSRVVTASSD 369
S K ++N + I ++ DG+R++ A+ +
Sbjct: 779 TSANERKSINVKQFFLNLEDPQEDMEVIVKCCSWSADGARIMVAAKN 825
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 57/125 (45%), Gaps = 7/125 (5%)
Query: 299 RRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTN 358
R + R H++ V FS DG +I S D T ++ ++G+ L E + H V F+
Sbjct: 614 RLVVRPHTDAVYHACFSEDGQRIASCGADKTLQVFKAETGEKLLEIKAHEDEVLCCAFST 673
Query: 359 DGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKT 418
D + T S D VK+W+ + + + T+ VN H F + H+++ +
Sbjct: 674 DDRFIATCSVDKKVKIWNSMTGELVHTYDEHSE------QVNCCH-FTNSSHHLLLATGS 726
Query: 419 SSIYI 423
S ++
Sbjct: 727 SDCFL 731
Score = 37.4 bits (85), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 38/168 (22%), Positives = 64/168 (38%), Gaps = 53/168 (31%)
Query: 345 RGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHL 404
R H+ V A F+ DG R+ + +D T++V+ ++ + L K
Sbjct: 618 RPHTDAVYHACFSEDGQRIASCGADKTLQVFKAETGEKLLEIKA---------------- 661
Query: 405 FPKNPDHIVVCNKTSSIYIMTLQGQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRN 464
+ D ++ C +FS+ R F+A C D+
Sbjct: 662 ---HEDEVLCC-----------------AFSTDDR----FIATC-----------SVDKK 686
Query: 465 LYCFSHQSGKLEHLMKVHEKDV--IGVTHHPHRNLLATYGEDCTMKLW 510
+ ++ +G+L H H + V T+ H LLAT DC +KLW
Sbjct: 687 VKIWNSMTGELVHTYDEHSEQVNCCHFTNSSHHLLLATGSSDCFLKLW 734
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 30/65 (46%)
Query: 447 ACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPHRNLLATYGEDCT 506
AC S G+ I G D+ L F ++G+ +K HE +V+ +AT D
Sbjct: 627 ACFSEDGQRIASCGADKTLQVFKAETGEKLLEIKAHEDEVLCCAFSTDDRFIATCSVDKK 686
Query: 507 MKLWK 511
+K+W
Sbjct: 687 VKIWN 691
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 72.4 bits (176), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 56/229 (24%), Positives = 99/229 (43%), Gaps = 34/229 (14%)
Query: 209 KFGT-----KSHAECAR---FSPDGQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFM 260
KFG K H+ + + DG + +S S+D + +WD +G+ YQ F+
Sbjct: 53 KFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGE-----TYQ---RFV 104
Query: 261 MHDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVF------ 314
H V ++ + + + SGS+D IKVW I+ GQCL L H++ V+ +
Sbjct: 105 GHKSDVXSVDIDKKASXIISGSRDKTIKVWTIK-GQCLATL-LGHNDWVSQVRVVPNEKA 162
Query: 315 SRDGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKV 374
D I+S D + L ++ +F GH+S +N + DG+ + +A D + +
Sbjct: 163 DDDSVTIISAGNDKXVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIXL 222
Query: 375 WDLKSTDCLQTFKP----------PPPLRGGDASVNSVHLFPKNPDHIV 413
W+L + T P A+ + +F +P ++V
Sbjct: 223 WNLAAKKAXYTLSAQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLV 271
Score = 62.4 bits (150), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 59/225 (26%), Positives = 100/225 (44%), Gaps = 18/225 (8%)
Query: 297 CLRRLERAHSEGVTSLVFSRDGSQIL-STSFDSTARIHGL-----KSGKLLKEFRGHSSY 350
LR H+ VTSL S +L S S D T L K G ++ F+GHS
Sbjct: 8 VLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHI 67
Query: 351 VNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPD 410
V D T DG+ ++AS D T+++WD+ + + Q F G + V SV + K
Sbjct: 68 VQDCTLTADGAYALSASWDKTLRLWDVATGETYQRF------VGHKSDVXSVDI-DKKAS 120
Query: 411 HIVVCNKTSSIYIMTLQGQVVKSFSSGKREGGDFVAACVSPKGE----WIYCVGEDRNLY 466
I+ ++ +I + T++GQ + + G + V + K + I G D+ +
Sbjct: 121 XIISGSRDKTIKVWTIKGQCLATLL-GHNDWVSQVRVVPNEKADDDSVTIISAGNDKXVK 179
Query: 467 CFSHQSGKLEHLMKVHEKDVIGVTHHPHRNLLATYGEDCTMKLWK 511
++ ++E H ++ +T P L+A+ G+D + LW
Sbjct: 180 AWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIXLWN 224
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 58/237 (24%), Positives = 101/237 (42%), Gaps = 27/237 (11%)
Query: 276 EMLASGSQDGKIKVWRI-----RSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTA 330
+L S S+D + W++ + G +R + HS V + DG+ LS S+D T
Sbjct: 31 NLLLSASRDKTLISWKLTGDDQKFGVPVRSF-KGHSHIVQDCTLTADGAYALSASWDKTL 89
Query: 331 RIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPP 390
R+ + +G+ + F GH S V S +++ S D T+KVW +K CL T
Sbjct: 90 RLWDVATGETYQRFVGHKSDVXSVDIDKKASXIISGSRDKTIKVWTIKG-QCLAT----- 143
Query: 391 PLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQVVKSFSSGKRE-GGDFVA--- 446
L G + V+ V + P + S I + VK+++ + + DF+
Sbjct: 144 -LLGHNDWVSQVRVVPNEK-----ADDDSVTIISAGNDKXVKAWNLNQFQIEADFIGHNS 197
Query: 447 ----ACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPHRNLLA 499
SP G I G+D + ++ + K + + + +V + P+R LA
Sbjct: 198 NINTLTASPDGTLIASAGKDGEIXLWNLAAKKAXYTLSAQD-EVFSLAFSPNRYWLA 253
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/166 (21%), Positives = 73/166 (43%), Gaps = 19/166 (11%)
Query: 224 DGQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQ 283
D ++S D ++ W+ Q+Q + F+ H+ + + S D ++AS +
Sbjct: 165 DSVTIISAGNDKXVKAWNLN--------QFQIEADFIGHNSNINTLTASPDGTLIASAGK 216
Query: 284 DGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLK- 342
DG+I +W + + + L A E V SL FS + L+ + + ++ L L+
Sbjct: 217 DGEIXLWNLAAKKAXYTLS-AQDE-VFSLAFSPN-RYWLAAATATGIKVFSLDPQYLVDD 273
Query: 343 ---EFRGHSS----YVNDAIFTNDGSRVVTASSDCTVKVWDLKSTD 381
EF G+S + ++ DG + +D ++VW + + +
Sbjct: 274 LRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVXTAN 319
Score = 36.2 bits (82), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 52/130 (40%), Gaps = 17/130 (13%)
Query: 210 FGTKSHAECARFSPDGQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCI 269
G S+ SPDG + S DG I +W+ + K A T DE V +
Sbjct: 193 IGHNSNINTLTASPDGTLIASAGKDGEIXLWNLAAKK--------AXYTLSAQDE-VFSL 243
Query: 270 EFSRDSEMLASGSQDGKIKVWRIRSGQCLRRL-------ERAHSEGVTSLVFSRDGSQIL 322
FS + LA+ + G IKV+ + + L +A SL +S DG +
Sbjct: 244 AFSPNRYWLAAATATG-IKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLF 302
Query: 323 STSFDSTARI 332
+ D+ R+
Sbjct: 303 AGYTDNVIRV 312
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 65.5 bits (158), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 50/184 (27%), Positives = 86/184 (46%), Gaps = 28/184 (15%)
Query: 206 HTIKFGTKSHAECA-RFSPDGQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHDE 264
H S C R++PDG+ L S D + VW G + + +TF H
Sbjct: 233 HVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPG----EGGWVPLQTFTQHQG 288
Query: 265 TVLCIEF-SRDSEMLASG--SQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQI 321
V + + S +LA+G + D I++W + SG CL ++ AHS+ V S+++S ++
Sbjct: 289 AVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVD-AHSQ-VCSILWSPHYKEL 346
Query: 322 LSTSFDSTARIHGLKSGKLL----------KEFRGHSSYVNDAIFTNDGSRVVTASSDCT 371
+S HG +L+ E +GH+S V + DG+ V +A++D T
Sbjct: 347 ISG--------HGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADET 398
Query: 372 VKVW 375
+++W
Sbjct: 399 LRLW 402
Score = 37.4 bits (85), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 36/167 (21%), Positives = 67/167 (40%), Gaps = 17/167 (10%)
Query: 224 DGQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQ 283
+G +L + +++WD K ++ M + S +S +L+SGS+
Sbjct: 169 EGNYLAVGTSSAEVQLWDVQQQKRLRN----------MTSHSARVGSLSWNSYILSSGSR 218
Query: 284 DGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGK---- 339
G I +R + HS+ V L ++ DG + S D+ + G+
Sbjct: 219 SGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWV 278
Query: 340 LLKEFRGHSSYVNDAIFTNDGSRVVT---ASSDCTVKVWDLKSTDCL 383
L+ F H V + S V+ +SD +++W++ S CL
Sbjct: 279 PLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACL 325
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 65.5 bits (158), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 50/184 (27%), Positives = 86/184 (46%), Gaps = 28/184 (15%)
Query: 206 HTIKFGTKSHAECA-RFSPDGQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHDE 264
H S C R++PDG+ L S D + VW G + + +TF H
Sbjct: 222 HVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPG----EGGWVPLQTFTQHQG 277
Query: 265 TVLCIEF-SRDSEMLASG--SQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQI 321
V + + S +LA+G + D I++W + SG CL ++ AHS+ V S+++S ++
Sbjct: 278 AVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVD-AHSQ-VCSILWSPHYKEL 335
Query: 322 LSTSFDSTARIHGLKSGKLL----------KEFRGHSSYVNDAIFTNDGSRVVTASSDCT 371
+S HG +L+ E +GH+S V + DG+ V +A++D T
Sbjct: 336 ISG--------HGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADET 387
Query: 372 VKVW 375
+++W
Sbjct: 388 LRLW 391
Score = 37.0 bits (84), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 36/167 (21%), Positives = 67/167 (40%), Gaps = 17/167 (10%)
Query: 224 DGQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQ 283
+G +L + +++WD K ++ M + S +S +L+SGS+
Sbjct: 158 EGNYLAVGTSSAEVQLWDVQQQKRLRN----------MTSHSARVGSLSWNSYILSSGSR 207
Query: 284 DGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGK---- 339
G I +R + HS+ V L ++ DG + S D+ + G+
Sbjct: 208 SGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWV 267
Query: 340 LLKEFRGHSSYVNDAIFTNDGSRVVT---ASSDCTVKVWDLKSTDCL 383
L+ F H V + S V+ +SD +++W++ S CL
Sbjct: 268 PLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACL 314
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/193 (25%), Positives = 87/193 (45%), Gaps = 9/193 (4%)
Query: 205 SHTIKFGTKSHAECARFSPDGQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHDE 264
+H IK ECA F+P+GQ + D +++ LS + +D H
Sbjct: 101 THAIKLHCPWVMECA-FAPNGQSVACGGLDSACSIFN-LSSQADRDGNMPVSRVLTGHKG 158
Query: 265 TVLCIEFSRDSEM-LASGSQDGKIKVWRIRSGQCLR----RLERAHSEGVTSL-VFSRDG 318
++ D E L +GS D +W + +GQ + H+ V SL + S +
Sbjct: 159 YASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNA 218
Query: 319 SQILSTSFDSTARIHGLK-SGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDL 377
+ +S S D+T R+ L+ + + ++ + GH +N F DG R T S D T +++D+
Sbjct: 219 NMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDM 278
Query: 378 KSTDCLQTFKPPP 390
++ LQ + P
Sbjct: 279 RTGHQLQVYNREP 291
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 53/250 (21%), Positives = 102/250 (40%), Gaps = 25/250 (10%)
Query: 257 ETFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSR 316
T H V ++++ + + S SQDG++ VW + Q + + H V F+
Sbjct: 60 RTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAI-KLHCPWVMECAFAP 118
Query: 317 DGSQILSTSFDSTARIHGLKSGK-------LLKEFRGHSSYVNDAIFTNDG-SRVVTASS 368
+G + DS I L S + + GH Y + + D +R++T S
Sbjct: 119 NGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSG 178
Query: 369 DCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIV--VCNKTSSIYIMTL 426
D T +WD+ + + F P G A V S+ + N + + C+ T ++ + +
Sbjct: 179 DQTCVLWDVTTGQRISIFGSEFP-SGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRI 237
Query: 427 QGQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDV 486
+ V+++ + GD + P G+ +D F ++G H ++V+ ++
Sbjct: 238 TSRAVRTYHGHE---GDINSVKFFPDGQRFGTGSDDGTCRLFDMRTG---HQLQVYNRE- 290
Query: 487 IGVTHHPHRN 496
P RN
Sbjct: 291 ------PDRN 294
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 42/175 (24%), Positives = 72/175 (41%), Gaps = 12/175 (6%)
Query: 211 GTKSHAECARFSPDGQF-LVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCI 269
G K +A ++ PD + L++ S D +WD +G+ + E H VL +
Sbjct: 155 GHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQ---RISIFGSEFPSGHTADVLSL 211
Query: 270 EF-SRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDS 328
S ++ M SGS D +++W +R R H + S+ F DG + + S D
Sbjct: 212 SINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDG 271
Query: 329 TARIHGLKSGKLLKEFR-------GHSSYVNDAIFTNDGSRVVTASSDCTVKVWD 376
T R+ +++G L+ + V F+ G + S+ VWD
Sbjct: 272 TCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWD 326
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/167 (23%), Positives = 69/167 (41%), Gaps = 23/167 (13%)
Query: 222 SPDGQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASG 281
S + +S S D + +WD + +A T+ H+ + ++F D + +G
Sbjct: 215 SLNANMFISGSCDTTVRLWDL-------RITSRAVRTYHGHEGDINSVKFFPDGQRFGTG 267
Query: 282 SQDGKIKVWRIRSGQCLRRLERAHSEG------VTSLVFSRDGSQILSTS-------FDS 328
S DG +++ +R+G L+ R VTS+ FS G + + +D+
Sbjct: 268 SDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDT 327
Query: 329 TARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVW 375
L G L G S + ++DGS + T S D +K+W
Sbjct: 328 LLAEMVLNLGTLQNSHEGRISCLG---LSSDGSALCTGSWDKNLKIW 371
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 59/140 (42%), Gaps = 8/140 (5%)
Query: 198 DMYPTTLSHTIKFGTKSHAECARFSPDGQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADE 257
D+ T+ + G + +F PDGQ + S DG ++D +G LQ E
Sbjct: 234 DLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGH---QLQVYNRE 290
Query: 258 TFMMHDE--TVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQC---LRRLERAHSEGVTSL 312
+E V + FS +L +G +G VW + L L+ +H ++ L
Sbjct: 291 PDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCL 350
Query: 313 VFSRDGSQILSTSFDSTARI 332
S DGS + + S+D +I
Sbjct: 351 GLSSDGSALCTGSWDKNLKI 370
Score = 35.8 bits (81), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 4/70 (5%)
Query: 221 FSPDGQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLAS 280
FS G+ L + +G VWD L ++ +L + H+ + C+ S D L +
Sbjct: 306 FSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNS----HEGRISCLGLSSDGSALCT 361
Query: 281 GSQDGKIKVW 290
GS D +K+W
Sbjct: 362 GSWDKNLKIW 371
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 57/221 (25%), Positives = 93/221 (42%), Gaps = 33/221 (14%)
Query: 207 TIKFGTKSHAECARFSPDGQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHDETV 266
++ T + C+ + D Q L + S DG +WD SG+L ++F H V
Sbjct: 149 SVAMHTNYLSACSFTNSDMQILTA-SGDGTCALWDVESGQLL--------QSFHGHGADV 199
Query: 267 LCIEF--SRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILST 324
LC++ S SG D K VW +RSGQC++ E H V S+ + G S
Sbjct: 200 LCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFE-THESDVNSVRYYPSGDAFASG 258
Query: 325 SFDSTARIHGLKSGKLLKEFRGHSSY--VNDAIFTNDGSRVVTASSDCTVKVWDLKSTDC 382
S D+T R++ L++ + + + S + F+ G + +D T+ VWD+
Sbjct: 259 SDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDV----- 313
Query: 383 LQTFKPPPPLRGGDASV-----NSVHLFPKNPDHIVVCNKT 418
L+G S+ N V +PD C+ +
Sbjct: 314 ---------LKGSRVSILFGHENRVSTLRVSPDGTAFCSGS 345
Score = 62.0 bits (149), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 51/193 (26%), Positives = 86/193 (44%), Gaps = 27/193 (13%)
Query: 258 TFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHS-----EGVTSL 312
T H VLC+++ +D + S SQDGK+ VW + + H+ V +
Sbjct: 59 TLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFT------TNKEHAVTMPCTWVMAC 112
Query: 313 VFSRDGSQILSTSFDSTARIHGLKSGK------LLKEFRGHSSYVNDAIFTNDGSRVVTA 366
++ G I D+ ++ L K K H++Y++ FTN +++TA
Sbjct: 113 AYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTA 172
Query: 367 SSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVV---CNKTSSIYI 423
S D T +WD++S LQ+F G A V + L P + V C+K + ++
Sbjct: 173 SGDGTCALWDVESGQLLQSF------HGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWD 226
Query: 424 MTLQGQVVKSFSS 436
M GQ V++F +
Sbjct: 227 MR-SGQCVQAFET 238
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/184 (27%), Positives = 86/184 (46%), Gaps = 28/184 (15%)
Query: 206 HTIKFGTKSHAECA-RFSPDGQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHDE 264
H S C R++PDG+ L S D + VW G+ + +TF H
Sbjct: 142 HVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGG----WVPLQTFTQHQG 197
Query: 265 TVLCIEF-SRDSEMLASG--SQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQI 321
V + + S +LA+G + D I++W + SG CL ++ AHS+ V S+++S ++
Sbjct: 198 AVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVD-AHSQ-VCSILWSPHYKEL 255
Query: 322 LSTSFDSTARIHGLKSGKLL----------KEFRGHSSYVNDAIFTNDGSRVVTASSDCT 371
+S HG +L+ E +GH+S V + DG+ V +A++D T
Sbjct: 256 ISG--------HGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADET 307
Query: 372 VKVW 375
+++W
Sbjct: 308 LRLW 311
Score = 35.8 bits (81), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 36/167 (21%), Positives = 67/167 (40%), Gaps = 17/167 (10%)
Query: 224 DGQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQ 283
+G +L + +++WD K ++ M + S +S +L+SGS+
Sbjct: 78 EGNYLAVGTSSAEVQLWDVQQQKRLRN----------MTSHSARVGSLSWNSYILSSGSR 127
Query: 284 DGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGK---- 339
G I +R + HS+ V L ++ DG + S D+ + G+
Sbjct: 128 SGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWV 187
Query: 340 LLKEFRGHSSYVNDAIFTNDGSRVVT---ASSDCTVKVWDLKSTDCL 383
L+ F H V + S V+ +SD +++W++ S CL
Sbjct: 188 PLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACL 234
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 53/179 (29%), Positives = 85/179 (47%), Gaps = 24/179 (13%)
Query: 224 DGQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQ 283
D +++VS S D I+VW+ + + + T H + C+++ RD ++ SGS
Sbjct: 265 DDKYIVSASGDRTIKVWNTSTCEFVR--------TLNGHKRGIACLQY-RD-RLVVSGSS 314
Query: 284 DGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGL-------- 335
D I++W I G CLR LE H E V + F D +I+S ++D ++ L
Sbjct: 315 DNTIRLWDIECGACLRVLE-GHEELVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRA 371
Query: 336 KSGKL-LKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLR 393
+G L L+ HS V F D ++V++S D T+ +WD + Q P P R
Sbjct: 372 PAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWDFLNDPAAQAEPPRSPSR 428
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 82/167 (49%), Gaps = 18/167 (10%)
Query: 224 DGQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQ 283
D Q +VS D I++WD + + K+ L H +VLC+++ D ++ +GS
Sbjct: 142 DDQKIVSGLRDNTIKIWDKNTLECKRILT--------GHTGSVLCLQY--DERVIITGSS 191
Query: 284 DGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSG---KL 340
D ++VW + +G+ L L H E V L F + +++ S D + + + S L
Sbjct: 192 DSTVRVWDVNTGEMLNTLIH-HCEAVLHLRF--NNGMMVTCSKDRSIAVWDMASPTDITL 248
Query: 341 LKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFK 387
+ GH + VN F D +V+AS D T+KVW+ + + ++T
Sbjct: 249 RRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEFVRTLN 293
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 50/219 (22%), Positives = 90/219 (41%), Gaps = 29/219 (13%)
Query: 301 LERAH-----SEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAI 355
L+R H S+GV L + D +I+S D+T +I + + + GH+ V
Sbjct: 123 LQRIHCRSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSV--LC 178
Query: 356 FTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVC 415
D ++T SSD TV+VWD+ + + L T +V N +V C
Sbjct: 179 LQYDERVIITGSSDSTVRVWDVNTGEMLNTLI---------HHCEAVLHLRFNNGMMVTC 229
Query: 416 NKTSSIYIMTLQGQ---VVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQS 472
+K SI + + ++ G R + V ++I DR + ++ +
Sbjct: 230 SKDRSIAVWDMASPTDITLRRVLVGHRAAVNV----VDFDDKYIVSASGDRTIKVWNTST 285
Query: 473 GKLEHLMKVHEKDVIGVTHHPHRNLLATYG-EDCTMKLW 510
+ + H++ G+ +R+ L G D T++LW
Sbjct: 286 CEFVRTLNGHKR---GIACLQYRDRLVVSGSSDNTIRLW 321
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 62.8 bits (151), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 54/264 (20%), Positives = 113/264 (42%), Gaps = 11/264 (4%)
Query: 251 LQYQADETFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVT 310
++ +TF + V I+F + + G++++W + +R ++ + V
Sbjct: 1 MKLDIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETP-VR 59
Query: 311 SLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDC 370
+ F + I+ S D R+ +G+ + +F H Y+ V++ S D
Sbjct: 60 AGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDL 119
Query: 371 TVKVWDLKSTDCL-QTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQ 429
TVK+W+ ++ L QTF+ G + V V PK+P ++ + +L GQ
Sbjct: 120 TVKLWNWENNWALEQTFE------GHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSL-GQ 172
Query: 430 VVKSF--SSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVI 487
+F ++G+ G ++V P ++ +D + + +Q+ ++ H +V
Sbjct: 173 STPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVS 232
Query: 488 GVTHHPHRNLLATYGEDCTMKLWK 511
HP ++ + ED T+K+W
Sbjct: 233 FAVFHPTLPIIISGSEDGTLKIWN 256
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 74/157 (47%), Gaps = 10/157 (6%)
Query: 223 PDGQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFS-RDSEMLASG 281
P +++S S D +++W++ + + ++TF H+ V+C+ F+ +D ASG
Sbjct: 107 PTKPYVLSGSDDLTVKLWNW-------ENNWALEQTFEGHEHFVMCVAFNPKDPSTFASG 159
Query: 282 SQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSR--DGSQILSTSFDSTARIHGLKSGK 339
D +KVW + L GV + + D +++ S D T +I ++
Sbjct: 160 CLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKS 219
Query: 340 LLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWD 376
+ GH S V+ A+F +++ S D T+K+W+
Sbjct: 220 CVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWN 256
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 62/284 (21%), Positives = 115/284 (40%), Gaps = 19/284 (6%)
Query: 221 FSPDGQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLAS 280
F P ++++ + G +E+W+Y + + +Q + + V +F +
Sbjct: 21 FHPTEPWVLTTLYSGRVELWNYETQVEVRSIQ--------VTETPVRAGKFIARKNWIIV 72
Query: 281 GSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKL 340
GS D +I+V+ +G+ + E AH + + S+ +LS S D T ++ ++
Sbjct: 73 GSDDFRIRVFNYNTGEKVVDFE-AHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWA 131
Query: 341 LKE-FRGHSSYVNDAIFT-NDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDAS 398
L++ F GH +V F D S + D TVKVW L + T G +
Sbjct: 132 LEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLT-----TGQERG 186
Query: 399 VNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQVVKSFSSGKREGGDFVAACVSPKGEWIYC 458
VN V +P PD + + + I Q ++ + + A P I
Sbjct: 187 VNYVDYYPL-PDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIIS 245
Query: 459 VGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHP--HRNLLAT 500
ED L ++ + K+E + V + + HP +N +A+
Sbjct: 246 GSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIAS 289
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 62.8 bits (151), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 54/264 (20%), Positives = 113/264 (42%), Gaps = 11/264 (4%)
Query: 251 LQYQADETFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVT 310
++ +TF + V I+F + + G++++W + +R ++ + V
Sbjct: 1 MKLDIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETP-VR 59
Query: 311 SLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDC 370
+ F + I+ S D R+ +G+ + +F H Y+ V++ S D
Sbjct: 60 AGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDL 119
Query: 371 TVKVWDLKSTDCL-QTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQ 429
TVK+W+ ++ L QTF+ G + V V PK+P ++ + +L GQ
Sbjct: 120 TVKLWNWENNWALEQTFE------GHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSL-GQ 172
Query: 430 VVKSF--SSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVI 487
+F ++G+ G ++V P ++ +D + + +Q+ ++ H +V
Sbjct: 173 STPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVS 232
Query: 488 GVTHHPHRNLLATYGEDCTMKLWK 511
HP ++ + ED T+K+W
Sbjct: 233 FAVFHPTLPIIISGSEDGTLKIWN 256
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 74/157 (47%), Gaps = 10/157 (6%)
Query: 223 PDGQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFS-RDSEMLASG 281
P +++S S D +++W++ + + ++TF H+ V+C+ F+ +D ASG
Sbjct: 107 PTKPYVLSGSDDLTVKLWNW-------ENNWALEQTFEGHEHFVMCVAFNPKDPSTFASG 159
Query: 282 SQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSR--DGSQILSTSFDSTARIHGLKSGK 339
D +KVW + L GV + + D +++ S D T +I ++
Sbjct: 160 CLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKS 219
Query: 340 LLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWD 376
+ GH S V+ A+F +++ S D T+K+W+
Sbjct: 220 CVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWN 256
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 62/284 (21%), Positives = 115/284 (40%), Gaps = 19/284 (6%)
Query: 221 FSPDGQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLAS 280
F P ++++ + G +E+W+Y + + +Q + + V +F +
Sbjct: 21 FHPTEPWVLTTLYSGRVELWNYETQVEVRSIQ--------VTETPVRAGKFIARKNWIIV 72
Query: 281 GSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKL 340
GS D +I+V+ +G+ + E AH + + S+ +LS S D T ++ ++
Sbjct: 73 GSDDFRIRVFNYNTGEKVVDFE-AHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWA 131
Query: 341 LKE-FRGHSSYVNDAIFT-NDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDAS 398
L++ F GH +V F D S + D TVKVW L + T G +
Sbjct: 132 LEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLT-----TGQERG 186
Query: 399 VNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQVVKSFSSGKREGGDFVAACVSPKGEWIYC 458
VN V +P PD + + + I Q ++ + + A P I
Sbjct: 187 VNYVDYYPL-PDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIIS 245
Query: 459 VGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHP--HRNLLAT 500
ED L ++ + K+E + V + + HP +N +A+
Sbjct: 246 GSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIAS 289
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 62.0 bits (149), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 56/245 (22%), Positives = 106/245 (43%), Gaps = 46/245 (18%)
Query: 272 SRDSEMLASGSQDGKIKVWRIRSGQ------CLRRLERAHSEGVTSLVFSRDGSQILSTS 325
+ DS +L SGS+D + +W++ + + H+ V+ L S++ +S+S
Sbjct: 36 NEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSS 95
Query: 326 FDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQT 385
+D T R+ L++G K F GH S V F+ D ++++A ++ +K+W++
Sbjct: 96 WDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNIL------- 148
Query: 386 FKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQVVKSFSSGKREGGDFV 445
G+ +S +N V C + S I +KS
Sbjct: 149 ---------GECKFSSAE--KENHSDWVSCVRYSPI---------MKS------------ 176
Query: 446 AACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPHRNLLATYGEDC 505
A V P + VG D L + + + ++ + K HE +V ++ P+ +AT G+D
Sbjct: 177 ANKVQPFAPYFASVGWDGRLKVW-NTNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDK 235
Query: 506 TMKLW 510
+ +W
Sbjct: 236 KLLIW 240
Score = 48.5 bits (114), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 47/192 (24%), Positives = 81/192 (42%), Gaps = 26/192 (13%)
Query: 227 FLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQDGK 286
F +S S+D + +WD +G K F+ H V + FS D+ + S + +
Sbjct: 90 FAISSSWDKTLRLWDLRTGTTYK--------RFVGHQSEVYSVAFSPDNRQILSAGAERE 141
Query: 287 IKVWRIRSGQC-LRRLERA-HSEGVTSLVFS-----RDGSQILSTSFDSTARIHGLK--- 336
IK+W I G+C E+ HS+ V+ + +S + Q + F S LK
Sbjct: 142 IKLWNIL-GECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWN 200
Query: 337 -SGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGG 395
+ ++ F+ H S VN + +G + T D + +WD+ L P G
Sbjct: 201 TNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDI-----LNLTYPQREFDAG 255
Query: 396 DASVNSVHLFPK 407
+++N + PK
Sbjct: 256 -STINQIAFNPK 266
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 59/267 (22%), Positives = 109/267 (40%), Gaps = 43/267 (16%)
Query: 224 DGQFLVSCSFDGFIEVWDYLSGKLKKDLQYQ----ADETFMMHDETVLCIEFSRDSEMLA 279
D L+S S D + +W KL ++ Q + H+ V + S+++
Sbjct: 38 DSPVLISGSRDKTVMIW-----KLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAI 92
Query: 280 SGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGL---- 335
S S D +++W +R+G +R SE V S+ FS D QILS + ++ +
Sbjct: 93 SSSWDKTLRLWDLRTGTTYKRFVGHQSE-VYSVAFSPDNRQILSAGAEREIKLWNILGEC 151
Query: 336 KSGKLLKEFRGHSSYVNDAIFT---NDGSRV-------VTASSDCTVKVWDLKSTDCLQT 385
K KE HS +V+ ++ ++V + D +KVW+
Sbjct: 152 KFSSAEKE--NHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWN-------TN 202
Query: 386 FKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQVVKSFSSGKRE---GG 442
F+ + +++VN + + P N +I K + I + + + +RE G
Sbjct: 203 FQIRYTFKAHESNVNHLSISP-NGKYIATGGKDKKLLIWD-----ILNLTYPQREFDAGS 256
Query: 443 DFVAACVSPKGEWIYCVGEDRNLYCFS 469
+PK +W+ VG D+ + F+
Sbjct: 257 TINQIAFNPKLQWV-AVGTDQGVKIFN 282
Score = 37.7 bits (86), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 37/85 (43%), Gaps = 19/85 (22%)
Query: 218 CARFSPD----------GQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHDETVL 267
C R+SP + S +DG ++VW+ +Q TF H+ V
Sbjct: 167 CVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWN---------TNFQIRYTFKAHESNVN 217
Query: 268 CIEFSRDSEMLASGSQDGKIKVWRI 292
+ S + + +A+G +D K+ +W I
Sbjct: 218 HLSISPNGKYIATGGKDKKLLIWDI 242
Score = 36.2 bits (82), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 41/177 (23%), Positives = 73/177 (41%), Gaps = 19/177 (10%)
Query: 211 GTKSHAECARFSPDGQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIE 270
G +S FSPD + ++S + I++W+ L + ++ + E H + V C+
Sbjct: 116 GHQSEVYSVAFSPDNRQILSAGAEREIKLWNILG-----ECKFSSAEK-ENHSDWVSCVR 169
Query: 271 FSRD----------SEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQ 320
+S + AS DG++KVW + +R +AH V L S +G
Sbjct: 170 YSPIMKSANKVQPFAPYFASVGWDGRLKVW--NTNFQIRYTFKAHESNVNHLSISPNGKY 227
Query: 321 ILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDL 377
I + D I + + + S +N F N + V +D VK+++L
Sbjct: 228 IATGGKDKKLLIWDILNLTYPQREFDAGSTINQIAF-NPKLQWVAVGTDQGVKIFNL 283
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 61.6 bits (148), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 54/258 (20%), Positives = 111/258 (43%), Gaps = 11/258 (4%)
Query: 257 ETFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSR 316
+TF + V I+F + + G++++W + +R ++ + V + F
Sbjct: 7 KTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETP-VRAGKFIA 65
Query: 317 DGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWD 376
+ I+ S D R+ +G+ + +F H Y+ V++ S D TVK+W+
Sbjct: 66 RKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWN 125
Query: 377 LKSTDCL-QTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQVVKSF- 434
++ L QTF+ G + V V PK+P ++ + +L GQ +F
Sbjct: 126 WENNWALEQTFE------GHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSL-GQSTPNFT 178
Query: 435 -SSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHP 493
++G+ G ++V P ++ +D + + +Q+ ++ H +V HP
Sbjct: 179 LTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHP 238
Query: 494 HRNLLATYGEDCTMKLWK 511
++ + ED T+K+W
Sbjct: 239 TLPIIISGSEDGTLKIWN 256
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 74/157 (47%), Gaps = 10/157 (6%)
Query: 223 PDGQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFS-RDSEMLASG 281
P +++S S D +++W++ + + ++TF H+ V+C+ F+ +D ASG
Sbjct: 107 PTKPYVLSGSDDLTVKLWNW-------ENNWALEQTFEGHEHFVMCVAFNPKDPSTFASG 159
Query: 282 SQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSR--DGSQILSTSFDSTARIHGLKSGK 339
D +KVW + L GV + + D +++ S D T +I ++
Sbjct: 160 CLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKS 219
Query: 340 LLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWD 376
+ GH S V+ A+F +++ S D T+K+W+
Sbjct: 220 CVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWN 256
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 65/286 (22%), Positives = 118/286 (41%), Gaps = 23/286 (8%)
Query: 221 FSPDGQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLAS 280
F P ++++ + G +E+W+Y + + +Q + + V +F +
Sbjct: 21 FHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQ--------VTETPVRAGKFIARKNWIIV 72
Query: 281 GSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKL 340
GS D +I+V+ +G+ + E AH + + S+ +LS S D T ++ ++
Sbjct: 73 GSDDFRIRVFNYNTGEKVVDFE-AHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWA 131
Query: 341 LKE-FRGHSSYVNDAIFT-NDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDAS 398
L++ F GH +V F D S + D TVKVW L + T G +
Sbjct: 132 LEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLT-----TGQERG 186
Query: 399 VNSVHLFPKNPD--HIVVCNKTSSIYIMTLQGQVVKSFSSGKREGGDFVAACVSPKGEWI 456
VN V +P PD +++ + +I I Q + + G F A P I
Sbjct: 187 VNYVDYYPL-PDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSF--AVFHPTLPII 243
Query: 457 YCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHP--HRNLLAT 500
ED L ++ + K+E + V + + HP +N +A+
Sbjct: 244 ISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIAS 289
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 54/258 (20%), Positives = 111/258 (43%), Gaps = 11/258 (4%)
Query: 257 ETFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSR 316
+TF + V I+F + + G++++W + +R ++ + V + F
Sbjct: 7 KTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETP-VRAGKFIA 65
Query: 317 DGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWD 376
+ I+ S D R+ +G+ + +F H Y+ V++ S D TVK+W+
Sbjct: 66 RKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWN 125
Query: 377 LKSTDCL-QTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQVVKSF- 434
++ L QTF+ G + V V PK+P ++ + +L GQ +F
Sbjct: 126 WENNWALEQTFE------GHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSL-GQSTPNFT 178
Query: 435 -SSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHP 493
++G+ G ++V P ++ +D + + +Q+ ++ H +V HP
Sbjct: 179 LTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHP 238
Query: 494 HRNLLATYGEDCTMKLWK 511
++ + ED T+K+W
Sbjct: 239 TLPIIISGSEDGTLKIWN 256
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 74/157 (47%), Gaps = 10/157 (6%)
Query: 223 PDGQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFS-RDSEMLASG 281
P +++S S D +++W++ + + ++TF H+ V+C+ F+ +D ASG
Sbjct: 107 PTKPYVLSGSDDLTVKLWNW-------ENNWALEQTFEGHEHFVMCVAFNPKDPSTFASG 159
Query: 282 SQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSR--DGSQILSTSFDSTARIHGLKSGK 339
D +KVW + L GV + + D +++ S D T +I ++
Sbjct: 160 CLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKS 219
Query: 340 LLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWD 376
+ GH S V+ A+F +++ S D T+K+W+
Sbjct: 220 CVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWN 256
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 65/286 (22%), Positives = 118/286 (41%), Gaps = 23/286 (8%)
Query: 221 FSPDGQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLAS 280
F P ++++ + G +E+W+Y + + +Q + + V +F +
Sbjct: 21 FHPTEPWVLTTLYSGRVELWNYETQVEVRSIQ--------VTETPVRAGKFIARKNWIIV 72
Query: 281 GSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKL 340
GS D +I+V+ +G+ + E AH + + S+ +LS S D T ++ ++
Sbjct: 73 GSDDFRIRVFNYNTGEKVVDFE-AHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWA 131
Query: 341 LKE-FRGHSSYVNDAIFT-NDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDAS 398
L++ F GH +V F D S + D TVKVW L + T G +
Sbjct: 132 LEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLT-----TGQERG 186
Query: 399 VNSVHLFPKNPD--HIVVCNKTSSIYIMTLQGQVVKSFSSGKREGGDFVAACVSPKGEWI 456
VN V +P PD +++ + +I I Q + + G F A P I
Sbjct: 187 VNYVDYYPL-PDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSF--AVFHPTLPII 243
Query: 457 YCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHP--HRNLLAT 500
ED L ++ + K+E + V + + HP +N +A+
Sbjct: 244 ISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIAS 289
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 58.9 bits (141), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 45/194 (23%), Positives = 83/194 (42%), Gaps = 34/194 (17%)
Query: 225 GQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEF--SRDSEMLASGS 282
G LVS S D + VWD G F H+ TV C++ ++ + + +GS
Sbjct: 173 GGILVSGSTDRTVRVWDIKKG--------CCTHVFEGHNSTVRCLDIVEYKNIKYIVTGS 224
Query: 283 QDGKIKVWRI----------------------RSGQCLRRLERAHSEGVTSLVFSRDGSQ 320
+D + VW++ + R H V ++ S G+
Sbjct: 225 RDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGHGNI 282
Query: 321 ILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKST 380
++S S+D+T + + K L GH+ + I+ ++ R ++AS D T+++WDL++
Sbjct: 283 VVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENG 342
Query: 381 DCLQTFKPPPPLRG 394
+ + T + L G
Sbjct: 343 ELMYTLQGHTALVG 356
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 46/191 (24%), Positives = 80/191 (41%), Gaps = 39/191 (20%)
Query: 218 CARFSPDGQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEM 277
C +F + ++++ + D I V+D ++ K L HD V ++++ +
Sbjct: 127 CLQF--EDNYVITGADDKMIRVYDSINKKFLLQLS--------GHDGGVWALKYAHGG-I 175
Query: 278 LASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSL--VFSRDGSQILSTSFDSTARIHGL 335
L SGS D ++VW I+ G C E H+ V L V ++ I++ S D+T + L
Sbjct: 176 LVSGSTDRTVRVWDIKKGCCTHVFE-GHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKL 234
Query: 336 -----------------------KSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTV 372
++ + RGH + V + G+ VV+ S D T+
Sbjct: 235 PKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGHGNIVVSGSYDNTL 292
Query: 373 KVWDLKSTDCL 383
VWD+ CL
Sbjct: 293 IVWDVAQMKCL 303
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 63/129 (48%), Gaps = 9/129 (6%)
Query: 299 RRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTN 358
R R H V + + D + +++ + D R++ + K L + GH V A+
Sbjct: 114 RTTLRGHMTSVITCLQFED-NYVITGADDKMIRVYDSINKKFLLQLSGHDGGVW-ALKYA 171
Query: 359 DGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFP-KNPDHIVVCNK 417
G +V+ S+D TV+VWD+K C F+ G +++V + + KN +IV ++
Sbjct: 172 HGGILVSGSTDRTVRVWDIKKGCCTHVFE------GHNSTVRCLDIVEYKNIKYIVTGSR 225
Query: 418 TSSIYIMTL 426
+++++ L
Sbjct: 226 DNTLHVWKL 234
Score = 35.8 bits (81), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 54/128 (42%), Gaps = 22/128 (17%)
Query: 229 VSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQDGKIK 288
+S S D I +WD +G+L LQ T L + L S + DG I+
Sbjct: 326 ISASMDTTIRIWDLENGELMYTLQ----------GHTALVGLLRLSDKFLVSAAADGSIR 375
Query: 289 VWRIRSGQCLRRLERAHSE--GVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRG 346
W + R+ H+ +T+ S IL + ++ I+ L+SGKL+
Sbjct: 376 GW--DANDYSRKFSYHHTNLSAITTFYVS---DNILVSGSENQFNIYNLRSGKLV----- 425
Query: 347 HSSYVNDA 354
H++ + DA
Sbjct: 426 HANILKDA 433
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 32/164 (19%), Positives = 64/164 (39%), Gaps = 13/164 (7%)
Query: 216 AECARFSPDGQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDS 275
A S G +VS S+D + VWD Q + H + + + +
Sbjct: 271 ASVRTVSGHGNIVVSGSYDNTLIVWDV--------AQMKCLYILSGHTDRIYSTIYDHER 322
Query: 276 EMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGL 335
+ S S D I++W + +G+ + L +G T+LV S S + I G
Sbjct: 323 KRCISASMDTTIRIWDLENGELMYTL-----QGHTALVGLLRLSDKFLVSAAADGSIRGW 377
Query: 336 KSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKS 379
+ ++F H + ++ ++ + S+ +++L+S
Sbjct: 378 DANDYSRKFSYHHTNLSAITTFYVSDNILVSGSENQFNIYNLRS 421
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 58.9 bits (141), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 45/194 (23%), Positives = 82/194 (42%), Gaps = 34/194 (17%)
Query: 225 GQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEF--SRDSEMLASGS 282
G LVS S D + VWD G F H+ TV C++ ++ + + +GS
Sbjct: 173 GGILVSGSTDRTVRVWDIKKG--------CCTHVFEGHNSTVRCLDIVEYKNIKYIVTGS 224
Query: 283 QDGKIKVWRI----------------------RSGQCLRRLERAHSEGVTSLVFSRDGSQ 320
+D + VW++ + R H V ++ S G+
Sbjct: 225 RDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHXASVRTV--SGHGNI 282
Query: 321 ILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKST 380
++S S+D+T + + K L GH+ + I+ ++ R ++AS D T+++WDL++
Sbjct: 283 VVSGSYDNTLIVWDVAQXKCLYILSGHTDRIYSTIYDHERKRCISASXDTTIRIWDLENG 342
Query: 381 DCLQTFKPPPPLRG 394
+ T + L G
Sbjct: 343 ELXYTLQGHTALVG 356
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 48/202 (23%), Positives = 84/202 (41%), Gaps = 39/202 (19%)
Query: 207 TIKFGTKSHAECARFSPDGQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHDETV 266
T++ S C +F + ++++ + D I V+D ++ K L HD V
Sbjct: 116 TLRGHXTSVITCLQF--EDNYVITGADDKXIRVYDSINKKFLLQLS--------GHDGGV 165
Query: 267 LCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSL--VFSRDGSQILST 324
++++ +L SGS D ++VW I+ G C E H+ V L V ++ I++
Sbjct: 166 WALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFE-GHNSTVRCLDIVEYKNIKYIVTG 223
Query: 325 SFDSTARIHGL-----------------------KSGKLLKEFRGHSSYVNDAIFTNDGS 361
S D+T + L ++ + RGH + V + G+
Sbjct: 224 SRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHXASVRTV--SGHGN 281
Query: 362 RVVTASSDCTVKVWDLKSTDCL 383
VV+ S D T+ VWD+ CL
Sbjct: 282 IVVSGSYDNTLIVWDVAQXKCL 303
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 63/129 (48%), Gaps = 9/129 (6%)
Query: 299 RRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTN 358
R R H V + + D + +++ + D R++ + K L + GH V A+
Sbjct: 114 RTTLRGHXTSVITCLQFED-NYVITGADDKXIRVYDSINKKFLLQLSGHDGGVW-ALKYA 171
Query: 359 DGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFP-KNPDHIVVCNK 417
G +V+ S+D TV+VWD+K C F+ G +++V + + KN +IV ++
Sbjct: 172 HGGILVSGSTDRTVRVWDIKKGCCTHVFE------GHNSTVRCLDIVEYKNIKYIVTGSR 225
Query: 418 TSSIYIMTL 426
+++++ L
Sbjct: 226 DNTLHVWKL 234
Score = 35.0 bits (79), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 54/128 (42%), Gaps = 22/128 (17%)
Query: 229 VSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQDGKIK 288
+S S D I +WD +G+L LQ T L + L S + DG I+
Sbjct: 326 ISASXDTTIRIWDLENGELXYTLQ----------GHTALVGLLRLSDKFLVSAAADGSIR 375
Query: 289 VWRIRSGQCLRRLERAHSE--GVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRG 346
W + R+ H+ +T+ S IL + ++ I+ L+SGKL+
Sbjct: 376 GW--DANDYSRKFSYHHTNLSAITTFYVS---DNILVSGSENQFNIYNLRSGKLV----- 425
Query: 347 HSSYVNDA 354
H++ + DA
Sbjct: 426 HANILKDA 433
Score = 32.3 bits (72), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 33/168 (19%), Positives = 65/168 (38%), Gaps = 14/168 (8%)
Query: 213 KSHAECAR-FSPDGQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEF 271
+ H R S G +VS S+D + VWD Q + H + + +
Sbjct: 267 RGHXASVRTVSGHGNIVVSGSYDNTLIVWDV--------AQXKCLYILSGHTDRIYSTIY 318
Query: 272 SRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTAR 331
+ + S S D I++W + +G+ L +G T+LV S S +
Sbjct: 319 DHERKRCISASXDTTIRIWDLENGELXYTL-----QGHTALVGLLRLSDKFLVSAAADGS 373
Query: 332 IHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKS 379
I G + ++F H + ++ ++ + S+ +++L+S
Sbjct: 374 IRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGSENQFNIYNLRS 421
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/199 (23%), Positives = 87/199 (43%), Gaps = 7/199 (3%)
Query: 196 VEDMYPTTLSHTIKFGTKSHAECARFSPDGQFLVSCSFDGFIEVWDYLSGKLKKDLQYQA 255
+ D Y T H I + CA ++P G ++ D +++ + ++ +
Sbjct: 92 IWDSYTTNKVHAIPLRSSWVMTCA-YAPSGNYVACGGLDNICSIYNLKT----REGNVRV 146
Query: 256 DETFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFS 315
H + C F D++++ S S D +W I +GQ H+ V SL +
Sbjct: 147 SRELAGHTGYLSCCRFLDDNQIVTS-SGDTTCALWDIETGQ-QTTTFTGHTGDVMSLSLA 204
Query: 316 RDGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVW 375
D +S + D++A++ ++ G + F GH S +N F +G+ T S D T +++
Sbjct: 205 PDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLF 264
Query: 376 DLKSTDCLQTFKPPPPLRG 394
DL++ L T+ + G
Sbjct: 265 DLRADQELMTYSHDNIICG 283
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 60/269 (22%), Positives = 117/269 (43%), Gaps = 23/269 (8%)
Query: 251 LQYQADETFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVT 310
+Q + T H + + + DS +L S SQDGK+ +W + + + S V
Sbjct: 54 IQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIP-LRSSWVM 112
Query: 311 SLVFSRDGSQILSTSFDSTARIHGLKSG----KLLKEFRGHSSYVNDAIFTNDGSRVVTA 366
+ ++ G+ + D+ I+ LK+ ++ +E GH+ Y++ F +D +++VT+
Sbjct: 113 TCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDD-NQIVTS 171
Query: 367 SSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIV-VCNKTSSIYIMT 425
S D T +WD+++ GD V S+ L P + C+ ++ ++ +
Sbjct: 172 SGDTTCALWDIET----GQQTTTFTGHTGD--VMSLSLAPDTRLFVSGACDASAKLWDVR 225
Query: 426 LQGQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKD 485
+G ++F+ + D A C P G +D F ++ + E + H+
Sbjct: 226 -EGMCRQTFTGHE---SDINAICFFPNGNAFATGSDDATCRLFDLRADQ-ELMTYSHDNI 280
Query: 486 VIGVT----HHPHRNLLATYGEDCTMKLW 510
+ G+T R LLA Y +D +W
Sbjct: 281 ICGITSVSFSKSGRLLLAGY-DDFNCNVW 308
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 71/159 (44%), Gaps = 13/159 (8%)
Query: 221 FSPDGQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLAS 280
+PD + VS + D ++WD G + +TF H+ + I F + A+
Sbjct: 203 LAPDTRLFVSGACDASAKLWDVREGMCR--------QTFTGHESDINAICFFPNGNAFAT 254
Query: 281 GSQDGKIKVWRIRSGQCLRRLERAHSE---GVTSLVFSRDGSQILSTSFDSTARIHGLKS 337
GS D +++ +R+ Q L + +H G+TS+ FS+ G +L+ D +
Sbjct: 255 GSDDATCRLFDLRADQEL--MTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALK 312
Query: 338 GKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWD 376
GH + V+ T+DG V T S D +K+W+
Sbjct: 313 ADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 351
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/190 (23%), Positives = 85/190 (44%), Gaps = 18/190 (9%)
Query: 221 FSPDGQFLVSCSFDGFIEVWD-YLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLA 279
+ D + LVS S DG + +WD Y + K+ + V+ ++ +A
Sbjct: 74 WGTDSRLLVSASQDGKLIIWDSYTTNKV---------HAIPLRSSWVMTCAYAPSGNYVA 124
Query: 280 SGSQDGKIKVWRIRSGQCLRRLER--AHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKS 337
G D ++ +++ + R+ R A G S D +QI+++S D+T + +++
Sbjct: 125 CGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIET 184
Query: 338 GKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDA 397
G+ F GH+ V D V+ + D + K+WD++ C QTF G ++
Sbjct: 185 GQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFT------GHES 238
Query: 398 SVNSVHLFPK 407
+N++ FP
Sbjct: 239 DINAICFFPN 248
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/199 (23%), Positives = 87/199 (43%), Gaps = 7/199 (3%)
Query: 196 VEDMYPTTLSHTIKFGTKSHAECARFSPDGQFLVSCSFDGFIEVWDYLSGKLKKDLQYQA 255
+ D Y T H I + CA ++P G ++ D +++ + ++ +
Sbjct: 81 IWDSYTTNKVHAIPLRSSWVMTCA-YAPSGNYVACGGLDNICSIYNLKT----REGNVRV 135
Query: 256 DETFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFS 315
H + C F D++++ S S D +W I +GQ H+ V SL +
Sbjct: 136 SRELAGHTGYLSCCRFLDDNQIVTS-SGDTTCALWDIETGQ-QTTTFTGHTGDVMSLSLA 193
Query: 316 RDGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVW 375
D +S + D++A++ ++ G + F GH S +N F +G+ T S D T +++
Sbjct: 194 PDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLF 253
Query: 376 DLKSTDCLQTFKPPPPLRG 394
DL++ L T+ + G
Sbjct: 254 DLRADQELMTYSHDNIICG 272
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 60/269 (22%), Positives = 117/269 (43%), Gaps = 23/269 (8%)
Query: 251 LQYQADETFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVT 310
+Q + T H + + + DS +L S SQDGK+ +W + + + S V
Sbjct: 43 IQMRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIP-LRSSWVM 101
Query: 311 SLVFSRDGSQILSTSFDSTARIHGLKSG----KLLKEFRGHSSYVNDAIFTNDGSRVVTA 366
+ ++ G+ + D+ I+ LK+ ++ +E GH+ Y++ F +D +++VT+
Sbjct: 102 TCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDD-NQIVTS 160
Query: 367 SSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIV-VCNKTSSIYIMT 425
S D T +WD+++ GD V S+ L P + C+ ++ ++ +
Sbjct: 161 SGDTTCALWDIET----GQQTTTFTGHTGD--VMSLSLAPDTRLFVSGACDASAKLWDVR 214
Query: 426 LQGQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKD 485
+G ++F+ + D A C P G +D F ++ + E + H+
Sbjct: 215 -EGMCRQTFTGHE---SDINAICFFPNGNAFATGSDDATCRLFDLRADQ-ELMTYSHDNI 269
Query: 486 VIGVT----HHPHRNLLATYGEDCTMKLW 510
+ G+T R LLA Y +D +W
Sbjct: 270 ICGITSVSFSKSGRLLLAGY-DDFNCNVW 297
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 71/159 (44%), Gaps = 13/159 (8%)
Query: 221 FSPDGQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLAS 280
+PD + VS + D ++WD G + +TF H+ + I F + A+
Sbjct: 192 LAPDTRLFVSGACDASAKLWDVREGMCR--------QTFTGHESDINAICFFPNGNAFAT 243
Query: 281 GSQDGKIKVWRIRSGQCLRRLERAHSE---GVTSLVFSRDGSQILSTSFDSTARIHGLKS 337
GS D +++ +R+ Q L + +H G+TS+ FS+ G +L+ D +
Sbjct: 244 GSDDATCRLFDLRADQEL--MTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALK 301
Query: 338 GKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWD 376
GH + V+ T+DG V T S D +K+W+
Sbjct: 302 ADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/199 (23%), Positives = 87/199 (43%), Gaps = 7/199 (3%)
Query: 196 VEDMYPTTLSHTIKFGTKSHAECARFSPDGQFLVSCSFDGFIEVWDYLSGKLKKDLQYQA 255
+ D Y T H I + CA ++P G ++ D +++ + ++ +
Sbjct: 81 IWDSYTTNKVHAIPLRSSWVMTCA-YAPSGNYVACGGLDNICSIYNLKT----REGNVRV 135
Query: 256 DETFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFS 315
H + C F D++++ S S D +W I +GQ H+ V SL +
Sbjct: 136 SRELAGHTGYLSCCRFLDDNQIVTS-SGDTTCALWDIETGQ-QTTTFTGHTGDVMSLSLA 193
Query: 316 RDGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVW 375
D +S + D++A++ ++ G + F GH S +N F +G+ T S D T +++
Sbjct: 194 PDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLF 253
Query: 376 DLKSTDCLQTFKPPPPLRG 394
DL++ L T+ + G
Sbjct: 254 DLRADQELMTYSHDNIICG 272
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 60/269 (22%), Positives = 117/269 (43%), Gaps = 23/269 (8%)
Query: 251 LQYQADETFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVT 310
+Q + T H + + + DS +L S SQDGK+ +W + + + S V
Sbjct: 43 IQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIP-LRSSWVM 101
Query: 311 SLVFSRDGSQILSTSFDSTARIHGLKSG----KLLKEFRGHSSYVNDAIFTNDGSRVVTA 366
+ ++ G+ + D+ I+ LK+ ++ +E GH+ Y++ F +D +++VT+
Sbjct: 102 TCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDD-NQIVTS 160
Query: 367 SSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIV-VCNKTSSIYIMT 425
S D T +WD+++ GD V S+ L P + C+ ++ ++ +
Sbjct: 161 SGDTTCALWDIET----GQQTTTFTGHTGD--VMSLSLAPDTRLFVSGACDASAKLWDVR 214
Query: 426 LQGQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKD 485
+G ++F+ + D A C P G +D F ++ + E + H+
Sbjct: 215 -EGMCRQTFTGHE---SDINAICFFPNGNAFATGSDDATCRLFDLRADQ-ELMTYSHDNI 269
Query: 486 VIGVT----HHPHRNLLATYGEDCTMKLW 510
+ G+T R LLA Y +D +W
Sbjct: 270 ICGITSVSFSKSGRLLLAGY-DDFNCNVW 297
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 71/159 (44%), Gaps = 13/159 (8%)
Query: 221 FSPDGQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLAS 280
+PD + VS + D ++WD G + +TF H+ + I F + A+
Sbjct: 192 LAPDTRLFVSGACDASAKLWDVREGMCR--------QTFTGHESDINAICFFPNGNAFAT 243
Query: 281 GSQDGKIKVWRIRSGQCLRRLERAHSE---GVTSLVFSRDGSQILSTSFDSTARIHGLKS 337
GS D +++ +R+ Q L + +H G+TS+ FS+ G +L+ D +
Sbjct: 244 GSDDATCRLFDLRADQEL--MTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALK 301
Query: 338 GKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWD 376
GH + V+ T+DG V T S D +K+W+
Sbjct: 302 ADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/190 (23%), Positives = 85/190 (44%), Gaps = 18/190 (9%)
Query: 221 FSPDGQFLVSCSFDGFIEVWD-YLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLA 279
+ D + LVS S DG + +WD Y + K+ + V+ ++ +A
Sbjct: 63 WGTDSRLLVSASQDGKLIIWDSYTTNKV---------HAIPLRSSWVMTCAYAPSGNYVA 113
Query: 280 SGSQDGKIKVWRIRSGQCLRRLER--AHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKS 337
G D ++ +++ + R+ R A G S D +QI+++S D+T + +++
Sbjct: 114 CGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIET 173
Query: 338 GKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDA 397
G+ F GH+ V D V+ + D + K+WD++ C QTF G ++
Sbjct: 174 GQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFT------GHES 227
Query: 398 SVNSVHLFPK 407
+N++ FP
Sbjct: 228 DINAICFFPN 237
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/199 (23%), Positives = 87/199 (43%), Gaps = 7/199 (3%)
Query: 196 VEDMYPTTLSHTIKFGTKSHAECARFSPDGQFLVSCSFDGFIEVWDYLSGKLKKDLQYQA 255
+ D Y T H I + CA ++P G ++ D +++ + ++ +
Sbjct: 81 IWDSYTTNKVHAIPLRSSWVMTCA-YAPSGNYVACGGLDNICSIYNLKT----REGNVRV 135
Query: 256 DETFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFS 315
H + C F D++++ S S D +W I +GQ H+ V SL +
Sbjct: 136 SRELAGHTGYLSCCRFLDDNQIVTS-SGDTTCALWDIETGQ-QTTTFTGHTGDVMSLSLA 193
Query: 316 RDGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVW 375
D +S + D++A++ ++ G + F GH S +N F +G+ T S D T +++
Sbjct: 194 PDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLF 253
Query: 376 DLKSTDCLQTFKPPPPLRG 394
DL++ L T+ + G
Sbjct: 254 DLRADQELMTYSHDNIICG 272
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 60/269 (22%), Positives = 117/269 (43%), Gaps = 23/269 (8%)
Query: 251 LQYQADETFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVT 310
+Q + T H + + + DS +L S SQDGK+ +W + + + S V
Sbjct: 43 IQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIP-LRSSWVM 101
Query: 311 SLVFSRDGSQILSTSFDSTARIHGLKSG----KLLKEFRGHSSYVNDAIFTNDGSRVVTA 366
+ ++ G+ + D+ I+ LK+ ++ +E GH+ Y++ F +D +++VT+
Sbjct: 102 TCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDD-NQIVTS 160
Query: 367 SSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIV-VCNKTSSIYIMT 425
S D T +WD+++ GD V S+ L P + C+ ++ ++ +
Sbjct: 161 SGDTTCALWDIET----GQQTTTFTGHTGD--VMSLSLAPDTRLFVSGACDASAKLWDVR 214
Query: 426 LQGQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKD 485
+G ++F+ + D A C P G +D F ++ + E + H+
Sbjct: 215 -EGMCRQTFTGHE---SDINAICFFPNGNAFATGSDDATCRLFDLRADQ-ELMTYSHDNI 269
Query: 486 VIGVT----HHPHRNLLATYGEDCTMKLW 510
+ G+T R LLA Y +D +W
Sbjct: 270 ICGITSVSFSKSGRLLLAGY-DDFNCNVW 297
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 71/159 (44%), Gaps = 13/159 (8%)
Query: 221 FSPDGQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLAS 280
+PD + VS + D ++WD G + +TF H+ + I F + A+
Sbjct: 192 LAPDTRLFVSGACDASAKLWDVREGMCR--------QTFTGHESDINAICFFPNGNAFAT 243
Query: 281 GSQDGKIKVWRIRSGQCLRRLERAHSE---GVTSLVFSRDGSQILSTSFDSTARIHGLKS 337
GS D +++ +R+ Q L + +H G+TS+ FS+ G +L+ D +
Sbjct: 244 GSDDATCRLFDLRADQEL--MTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALK 301
Query: 338 GKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWD 376
GH + V+ T+DG V T S D +K+W+
Sbjct: 302 ADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/190 (23%), Positives = 85/190 (44%), Gaps = 18/190 (9%)
Query: 221 FSPDGQFLVSCSFDGFIEVWD-YLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLA 279
+ D + LVS S DG + +WD Y + K+ + V+ ++ +A
Sbjct: 63 WGTDSRLLVSASQDGKLIIWDSYTTNKV---------HAIPLRSSWVMTCAYAPSGNYVA 113
Query: 280 SGSQDGKIKVWRIRSGQCLRRLER--AHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKS 337
G D ++ +++ + R+ R A G S D +QI+++S D+T + +++
Sbjct: 114 CGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIET 173
Query: 338 GKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDA 397
G+ F GH+ V D V+ + D + K+WD++ C QTF G ++
Sbjct: 174 GQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFT------GHES 227
Query: 398 SVNSVHLFPK 407
+N++ FP
Sbjct: 228 DINAICFFPN 237
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/199 (23%), Positives = 87/199 (43%), Gaps = 7/199 (3%)
Query: 196 VEDMYPTTLSHTIKFGTKSHAECARFSPDGQFLVSCSFDGFIEVWDYLSGKLKKDLQYQA 255
+ D Y T H I + CA ++P G ++ D +++ + ++ +
Sbjct: 81 IWDSYTTNKVHAIPLRSSWVMTCA-YAPSGNYVACGGLDNICSIYNLKT----REGNVRV 135
Query: 256 DETFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFS 315
H + C F D++++ S S D +W I +GQ H+ V SL +
Sbjct: 136 SRELAGHTGYLSCCRFLDDNQIVTS-SGDTTCALWDIETGQ-QTTTFTGHTGDVMSLSLA 193
Query: 316 RDGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVW 375
D +S + D++A++ ++ G + F GH S +N F +G+ T S D T +++
Sbjct: 194 PDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLF 253
Query: 376 DLKSTDCLQTFKPPPPLRG 394
DL++ L T+ + G
Sbjct: 254 DLRADQELMTYSHDNIICG 272
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 60/269 (22%), Positives = 117/269 (43%), Gaps = 23/269 (8%)
Query: 251 LQYQADETFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVT 310
+Q + T H + + + DS +L S SQDGK+ +W + + + S V
Sbjct: 43 IQMRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIP-LRSSWVM 101
Query: 311 SLVFSRDGSQILSTSFDSTARIHGLKSG----KLLKEFRGHSSYVNDAIFTNDGSRVVTA 366
+ ++ G+ + D+ I+ LK+ ++ +E GH+ Y++ F +D +++VT+
Sbjct: 102 TCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDD-NQIVTS 160
Query: 367 SSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIV-VCNKTSSIYIMT 425
S D T +WD+++ GD V S+ L P + C+ ++ ++ +
Sbjct: 161 SGDTTCALWDIET----GQQTTTFTGHTGD--VMSLSLAPDTRLFVSGACDASAKLWDVR 214
Query: 426 LQGQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKD 485
+G ++F+ + D A C P G +D F ++ + E + H+
Sbjct: 215 -EGMCRQTFTGHE---SDINAICFFPNGNAFATGSDDATCRLFDLRADQ-ELMTYSHDNI 269
Query: 486 VIGVT----HHPHRNLLATYGEDCTMKLW 510
+ G+T R LLA Y +D +W
Sbjct: 270 ICGITSVSFSKSGRLLLAGY-DDFNCNVW 297
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 71/159 (44%), Gaps = 13/159 (8%)
Query: 221 FSPDGQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLAS 280
+PD + VS + D ++WD G + +TF H+ + I F + A+
Sbjct: 192 LAPDTRLFVSGACDASAKLWDVREGMCR--------QTFTGHESDINAICFFPNGNAFAT 243
Query: 281 GSQDGKIKVWRIRSGQCLRRLERAHSE---GVTSLVFSRDGSQILSTSFDSTARIHGLKS 337
GS D +++ +R+ Q L + +H G+TS+ FS+ G +L+ D +
Sbjct: 244 GSDDATCRLFDLRADQEL--MTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALK 301
Query: 338 GKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWD 376
GH + V+ T+DG V T S D +K+W+
Sbjct: 302 ADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/160 (25%), Positives = 72/160 (45%), Gaps = 12/160 (7%)
Query: 221 FSPDGQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLAS 280
+SP G +L S SFD +W K ++ T H+ V + ++ +LA+
Sbjct: 69 WSPCGNYLASASFDATTCIWK------KNQDDFECVTTLEGHENEVKSVAWAPSGNLLAT 122
Query: 281 GSQDGKIKVWRIRSG---QCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKS 337
S+D + VW + +C+ L +H++ V +V+ + S S+D T +++ +
Sbjct: 123 CSRDKSVWVWEVDEEDEYECVSVL-NSHTQDVKHVVWHPSQELLASASYDDTVKLYREEE 181
Query: 338 GKLL--KEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVW 375
+ GH S V F G R+ + S D TV++W
Sbjct: 182 DDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIW 221
Score = 52.0 bits (123), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 59/238 (24%), Positives = 93/238 (39%), Gaps = 27/238 (11%)
Query: 211 GTKSHAECARFSPDGQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIE 270
G ++ + ++P G L +CS D + VW+ + ++ +Y+ H + V +
Sbjct: 103 GHENEVKSVAWAPSGNLLATCSRDKSVWVWE-----VDEEDEYECVSVLNSHTQDVKHVV 157
Query: 271 FSRDSEMLASGSQDGKIKVWRIRSGQ--CLRRLERAHSEGVTSLVFSRDGSQILSTSFDS 328
+ E+LAS S D +K++R C LE H V SL F G ++ S S D
Sbjct: 158 WHPSQELLASASYDDTVKLYREEEDDWVCCATLE-GHESTVWSLAFDPSGQRLASCSDDR 216
Query: 329 TARI---------HGLK------SGKLLKEFRG-HSSYVNDAIFTNDGSRVVTASSDCTV 372
T RI G+ S K + G HS + D + + TA D +
Sbjct: 217 TVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAI 276
Query: 373 KVW--DLKSTDCLQTFKPPPPLRGGDA-SVNSVHLFPKNPDHIVVCNKTSSIYIMTLQ 427
+V+ D S TF L + VN V PK P + C+ + Q
Sbjct: 277 RVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQ 334
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 52/228 (22%), Positives = 84/228 (36%), Gaps = 39/228 (17%)
Query: 277 MLASGSQDGKIKVWRIR--SGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHG 334
+LAS D +I++W S C L H V + +S G+ + S SFD+T I
Sbjct: 30 LLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWK 89
Query: 335 LKSG--KLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTD---CLQ----- 384
+ + GH + V + G+ + T S D +V VW++ D C+
Sbjct: 90 KNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSH 149
Query: 385 -------TFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQVVKSFSSG 437
+ P L + ++V L+ + D V C TL+G +S
Sbjct: 150 TQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCC--------ATLEGHESTVWSLA 201
Query: 438 KREGGDFVAACVSPKGEWIY------------CVGEDRNLYCFSHQSG 473
G +A+C + I+ C G D + C SG
Sbjct: 202 FDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSG 249
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 46/203 (22%), Positives = 74/203 (36%), Gaps = 49/203 (24%)
Query: 312 LVFSRDGSQILSTSFDSTARIHGLKSGKLLKEF---RGHSSYVNDAIFTNDGSRVVTASS 368
L ++ G+ + S D RI G + + + GH V ++ G+ + +AS
Sbjct: 22 LAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASF 81
Query: 369 DCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQG 428
D T +W D F+ L G + V SV P
Sbjct: 82 DATTCIWKKNQDD----FECVTTLEGHENEVKSVAWAPS--------------------- 116
Query: 429 QVVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIG 488
G+ +A C K W++ V E+ C S ++ H +DV
Sbjct: 117 -------------GNLLATCSRDKSVWVWEVDEEDEYECVS--------VLNSHTQDVKH 155
Query: 489 VTHHPHRNLLATYGEDCTMKLWK 511
V HP + LLA+ D T+KL++
Sbjct: 156 VVWHPSQELLASASYDDTVKLYR 178
>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|C Chain C, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|E Chain E, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|G Chain G, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
Length = 368
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 71/133 (53%), Gaps = 7/133 (5%)
Query: 263 DETVLCIEFSRDS---EMLASGSQDGKIKVWRIR-SGQCLRRLERAHSEGVTSLVFSRDG 318
D+++ C+ FS + L +GS ++ W ++ SGQ + + ++ H+ V + +S DG
Sbjct: 39 DDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDG 98
Query: 319 SQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDA--IFTNDGSRVVTASSDCTVKVWD 376
S++ + S D TA++ L S + + + H + V I + S V+T S D T+K WD
Sbjct: 99 SKVFTASCDKTAKMWDLSSNQAI-QIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWD 157
Query: 377 LKSTDCLQTFKPP 389
+S++ + + P
Sbjct: 158 TRSSNPMMVLQLP 170
Score = 35.0 bits (79), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 29/128 (22%), Positives = 54/128 (42%), Gaps = 11/128 (8%)
Query: 218 CARFSPD---GQFLVSCSFDGFIEVWDYL-SGKLKKDLQYQADETFMMHDETVLCIEFSR 273
C FSP G FL++ S+ + W+ SG+ Q MH VL + +S
Sbjct: 44 CLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQ-------QMHTGPVLDVCWSD 96
Query: 274 DSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIH 333
D + + S D K+W + S Q ++ + + + + S +++ S+D T +
Sbjct: 97 DGSKVFTASCDKTAKMWDLSSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFW 156
Query: 334 GLKSGKLL 341
+S +
Sbjct: 157 DTRSSNPM 164
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 61/125 (48%), Gaps = 4/125 (3%)
Query: 281 GSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKL 340
G+ +G IKV + R +++AH +T L F G ++S+S D +I +K G
Sbjct: 112 GTTEGDIKVLD-SNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSN 170
Query: 341 LKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVN 400
+ GH + V D + G V++AS D T+++W+ + + TF G VN
Sbjct: 171 PRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDG---VN 227
Query: 401 SVHLF 405
S+ LF
Sbjct: 228 SIALF 232
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 44/96 (45%), Gaps = 4/96 (4%)
Query: 250 DLQYQADETFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGV 309
+LQ + D+ H + ++F E L S SQD ++K+W ++ G R L H V
Sbjct: 126 NLQREIDQA---HVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTL-IGHRATV 181
Query: 310 TSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFR 345
T + G +LS S D T R+ +G + F
Sbjct: 182 TDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFN 217
Score = 37.4 bits (85), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 41/97 (42%), Gaps = 10/97 (10%)
Query: 220 RFSPDGQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLA 279
+F P G+ L+S S D +++W G + T + H TV I +
Sbjct: 143 KFFPSGEALISSSQDMQLKIWSVKDGSNPR--------TLIGHRATVTDIAIIDRGRNVL 194
Query: 280 SGSQDGKIKVWRIRSGQCLRRLERAHS--EGVTSLVF 314
S S DG I++W +G + R + +GV S+
Sbjct: 195 SASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIAL 231
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 61/125 (48%), Gaps = 4/125 (3%)
Query: 281 GSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKL 340
G+ +G IKV + R +++AH +T L F G ++S+S D +I +K G
Sbjct: 115 GTTEGDIKVLD-SNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSN 173
Query: 341 LKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVN 400
+ GH + V D + G V++AS D T+++W+ + + TF G VN
Sbjct: 174 PRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDG---VN 230
Query: 401 SVHLF 405
S+ LF
Sbjct: 231 SIALF 235
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 44/96 (45%), Gaps = 4/96 (4%)
Query: 250 DLQYQADETFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGV 309
+LQ + D+ H + ++F E L S SQD ++K+W ++ G R L H V
Sbjct: 129 NLQREIDQA---HVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTL-IGHRATV 184
Query: 310 TSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFR 345
T + G +LS S D T R+ +G + F
Sbjct: 185 TDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFN 220
Score = 37.4 bits (85), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 41/97 (42%), Gaps = 10/97 (10%)
Query: 220 RFSPDGQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLA 279
+F P G+ L+S S D +++W G + T + H TV I +
Sbjct: 146 KFFPSGEALISSSQDMQLKIWSVKDGSNPR--------TLIGHRATVTDIAIIDRGRNVL 197
Query: 280 SGSQDGKIKVWRIRSGQCLRRLERAHS--EGVTSLVF 314
S S DG I++W +G + R + +GV S+
Sbjct: 198 SASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIAL 234
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 48.5 bits (114), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 45/187 (24%), Positives = 75/187 (40%), Gaps = 6/187 (3%)
Query: 201 PTTLSHTIKFGTKSHAE--CARFSPDGQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADET 258
P H + T +H E CA + V G ++VWD +S K Q D
Sbjct: 36 PGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGGKGCVKVWD-ISHPGNKSPVSQLD-- 92
Query: 259 FMMHDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSE-GVTSLVFSRD 317
+ D + + D L G + + +W + + + E S +L S D
Sbjct: 93 CLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPD 152
Query: 318 GSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDL 377
S D + L + L+++F+GH+ + +NDG+++ T D TV+ WDL
Sbjct: 153 SKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDL 212
Query: 378 KSTDCLQ 384
+ LQ
Sbjct: 213 REGRQLQ 219
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 59/141 (41%), Gaps = 17/141 (12%)
Query: 176 LLPPGTQFDLFRGTAAMKQDVEDMYPTTLSHTIKFGTKSHAECA-RFSPDGQFLVSCSFD 234
LLP G L G A + D+ T + + + A A SPD + SC D
Sbjct: 105 LLPDGCT--LIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSD 162
Query: 235 GFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWRIRS 294
G I VWD + L + F H + CI+ S D L +G D ++ W +R
Sbjct: 163 GNIAVWDLHNQTLVRQ--------FQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLRE 214
Query: 295 GQCLRRLERAHSEGVTSLVFS 315
G+ L++ + TS +FS
Sbjct: 215 GRQLQQHD------FTSQIFS 229
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 26/113 (23%), Positives = 46/113 (40%), Gaps = 11/113 (9%)
Query: 221 FSPDGQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLAS 280
+ P G++L +EV + K +YQ +H+ VL ++F+ + S
Sbjct: 232 YCPTGEWLAVGMESSNVEVL-----HVNKPDKYQ----LHLHESCVLSLKFAYCGKWFVS 282
Query: 281 GSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIH 333
+D + WR G + + S V S S D I++ S D A ++
Sbjct: 283 TGKDNLLNAWRTPYGASI--FQSKESSSVLSCDISVDDKYIVTGSGDKKATVY 333
>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
pdb|3ZWL|D Chain D, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
Length = 369
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 47/90 (52%)
Query: 304 AHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRV 363
H +T + ++++G + S S DS+A + +G+ L GH+ +
Sbjct: 30 GHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYC 89
Query: 364 VTASSDCTVKVWDLKSTDCLQTFKPPPPLR 393
VT S+D ++K+WD+ + C+ T+K P P++
Sbjct: 90 VTGSADYSIKLWDVSNGQCVATWKSPVPVK 119
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 38/79 (48%), Gaps = 8/79 (10%)
Query: 220 RFSPDGQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLA 279
+++ +G L SCS D VW L+G+ L H T+ I+ ++
Sbjct: 39 KYNKEGDLLFSCSKDSSASVWYSLNGERLGTLD--------GHTGTIWSIDVDCFTKYCV 90
Query: 280 SGSQDGKIKVWRIRSGQCL 298
+GS D IK+W + +GQC+
Sbjct: 91 TGSADYSIKLWDVSNGQCV 109
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 75/177 (42%), Gaps = 26/177 (14%)
Query: 221 FSPDGQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMM--------HDETVLCIEFS 272
+ P L + SFD + +W + AD TF M H+ V + +S
Sbjct: 66 WRPHTSLLAAGSFDSTVSIWAK---------EESADRTFEMDLLAIIEGHENEVKGVAWS 116
Query: 273 RDSEMLASGSQDGKIKVWRI-RSGQ---CLRRLERAHSEGVTSLVFSRDGSQILSTSFDS 328
D LA+ S+D + +W SG+ C+ L+ HS+ V +++ + + S+S+D
Sbjct: 117 NDGYYLATCSRDKSVWIWETDESGEEYECISVLQE-HSQDVKHVIWHPSEALLASSSYDD 175
Query: 329 TARIHGL--KSGKLLKEFRGHSSYVNDAIF--TNDGSRVVTASSDCTVKVWDLKSTD 381
T RI + + GH V + F T R+ + S D TV+VW D
Sbjct: 176 TVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDD 232
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 63/130 (48%), Gaps = 12/130 (9%)
Query: 257 ETFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQ--CLRRL-ERAHSEGVTSLV 313
++ ++ E + +FS+ +LA+GS D KIK+ ++ + L E AH + + S+
Sbjct: 8 KSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVA 65
Query: 314 FSRDGSQILSTSFDSTARIHGLKSGK-------LLKEFRGHSSYVNDAIFTNDGSRVVTA 366
+ S + + SFDST I + LL GH + V ++NDG + T
Sbjct: 66 WRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATC 125
Query: 367 SSDCTVKVWD 376
S D +V +W+
Sbjct: 126 SRDKSVWIWE 135
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 42/172 (24%), Positives = 78/172 (45%), Gaps = 13/172 (7%)
Query: 166 QALKWQQHQGLLPPGTQFDLFRGTAAMKQDVEDMYPTTLSHTIKFGTKSHAECARFSPDG 225
+++ W+ H LL G+ FD A ++ + + L I+ G ++ + +S DG
Sbjct: 62 RSVAWRPHTSLLAAGS-FDSTVSIWAKEESADRTFEMDLLAIIE-GHENEVKGVAWSNDG 119
Query: 226 QFLVSCSFDGFIEVWDY-LSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQD 284
+L +CS D + +W+ SG+ +Y+ H + V + + +LAS S D
Sbjct: 120 YYLATCSRDKSVWIWETDESGE-----EYECISVLQEHSQDVKHVIWHPSEALLASSSYD 174
Query: 285 GKIKVWRIRSG--QCLRRLERAHSEGVTSLVFSRDGS--QILSTSFDSTARI 332
+++W+ +C+ L H V S F + ++ S S DST R+
Sbjct: 175 DTVRIWKDYDDDWECVAVL-NGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRV 225
Score = 37.0 bits (84), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 34/71 (47%), Gaps = 9/71 (12%)
Query: 442 GDFVAACVSPKGEWIYCVGEDRNLY-CFSHQSGKLEHLMKVHEKDVIGVTHHPHRNLLAT 500
G ++A C K WI+ E Y C S +++ H +DV V HP LLA+
Sbjct: 119 GYYLATCSRDKSVWIWETDESGEEYECIS--------VLQEHSQDVKHVIWHPSEALLAS 170
Query: 501 YGEDCTMKLWK 511
D T+++WK
Sbjct: 171 SSYDDTVRIWK 181
Score = 35.0 bits (79), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 60/285 (21%), Positives = 110/285 (38%), Gaps = 43/285 (15%)
Query: 256 DETFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLE-------RAHSEG 308
DET H + + + + + +LA+GS D + +W + R E H
Sbjct: 53 DET--AHKKAIRSVAWRPHTSLLAAGSFDSTVSIWA-KEESADRTFEMDLLAIIEGHENE 109
Query: 309 VTSLVFSRDGSQILSTSFDSTARIHGL-KSGK---LLKEFRGHSSYVNDAIFTNDGSRVV 364
V + +S DG + + S D + I +SG+ + + HS V I+ + +
Sbjct: 110 VKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLA 169
Query: 365 TASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIM 424
++S D TV++W D ++ L G + +V S F K +C+ + +
Sbjct: 170 SSSYDDTVRIW----KDYDDDWECVAVLNGHEGTVWSSD-FDKTEGVFRLCSGSDDSTV- 223
Query: 425 TLQGQVVKSFSSGKREGGDFVAACVSP--------KGEW-----IYCVGEDRNLYCFSHQ 471
+V K + + ++V + P W I VG D L +
Sbjct: 224 ----RVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNGLIASVGADGVLAVYEEV 279
Query: 472 SGKLEHLMK------VHEKDVIGVTHHPHRNLLATYGEDCTMKLW 510
G+ + K V+E +V+ + +LAT G+D + W
Sbjct: 280 DGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDGIVNFW 324
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 67/297 (22%), Positives = 122/297 (41%), Gaps = 38/297 (12%)
Query: 228 LVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQDGKI 287
+V+ + + + VW+ SG + L + T+ V +++S D L+ G +G +
Sbjct: 106 VVAVALERNVYVWNADSGSVSA-LAETDESTY------VASVKWSHDGSFLSVGLGNGLV 158
Query: 288 KVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTA------RIHGLKSGKLL 341
++ + S LR + H V L ++R +LS+ S A RI + G L
Sbjct: 159 DIYDVESQTKLRTMA-GHQARVGCLSWNR---HVLSSGSRSGAIHHHDVRIANHQIGTL- 213
Query: 342 KEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNS 401
+GHSS V + +DG ++ + +D V++WD +S+ P +A+V +
Sbjct: 214 ---QGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSS------IPKFTKTNHNAAVKA 264
Query: 402 VHLFPKNPDHIVVCNKTSSIYIM---TLQGQVVKSFSSGKREGGDFVAACVSPKGEWIYC 458
V P + + T I G V + +G + + SP + I
Sbjct: 265 VAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAGSQ----VTSLIWSPHSKEIMS 320
Query: 459 VG--EDRNLYCFSHQSGKLEHLMKV--HEKDVIGVTHHPHRNLLATYGEDCTMKLWK 511
D NL +S+ S L + + H+ V+ P +L+T D +K W+
Sbjct: 321 THGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWR 377
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 80/183 (43%), Gaps = 19/183 (10%)
Query: 224 DGQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEF-SRDSEMLASG- 281
DG L S D +++WD S K T H+ V + + S +LA+G
Sbjct: 228 DGLQLASGGNDNVVQIWDARSSIPKF--------TKTNHNAAVKAVAWCPWQSNLLATGG 279
Query: 282 -SQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSF--DSTARIHGLKSG 338
+ D +I W +G + ++ VTSL++S +I+ST D+ I S
Sbjct: 280 GTMDKQIHFWNAATGARVNTVDAGSQ--VTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSS 337
Query: 339 KLLK--EFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGD 396
L K + H + V + + DG + TA+SD +K W + D ++ +P P +
Sbjct: 338 GLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDGDHVK--RPIPITKTPS 395
Query: 397 ASV 399
+S+
Sbjct: 396 SSI 398
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 65/143 (45%), Gaps = 16/143 (11%)
Query: 268 CIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFD 327
C+ S D + +A G QD K+ V+++ H +TS+ FS +G+ +++T
Sbjct: 453 CVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQS 512
Query: 328 STARIHGLKSGKLL---KEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQ 384
+ + + L + H++ V ++ D R+ T S D +V VW++
Sbjct: 513 RKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMN------ 566
Query: 385 TFKP---PPPLRGGDA--SVNSV 402
KP P ++G A SVNSV
Sbjct: 567 --KPSDHPIIIKGAHAMSSVNSV 587
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/161 (20%), Positives = 68/161 (42%), Gaps = 3/161 (1%)
Query: 220 RFSPDGQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADE-TFMMHDETVLCIEFSRDSEML 278
R++PDG S DG I +++ + G K ++ D + H +V + +S D +
Sbjct: 197 RYNPDGSLFASTGGDGTIVLYNGVDGT--KTGVFEDDSLKNVAHSGSVFGLTWSPDGTKI 254
Query: 279 ASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSG 338
AS S D IK+W + + + + + L ++S S + + G
Sbjct: 255 ASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELG 314
Query: 339 KLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKS 379
+ + GH+ + + DG + +A ++ + WD+ +
Sbjct: 315 SIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDIST 355
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 56/129 (43%), Gaps = 15/129 (11%)
Query: 221 FSPDGQF-LVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLA 279
F P F ++S S D + +++ K K TF H + V + ++ D + A
Sbjct: 155 FKPSRPFRIISGSDDNTVAIFEGPPFKFK--------STFGEHTKFVHSVRYNPDGSLFA 206
Query: 280 SGSQDGKIKVWRIRSGQCLRRLER------AHSEGVTSLVFSRDGSQILSTSFDSTARIH 333
S DG I ++ G E AHS V L +S DG++I S S D T +I
Sbjct: 207 STGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIW 266
Query: 334 GLKSGKLLK 342
+ + K+ K
Sbjct: 267 NVATLKVEK 275
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 48/90 (53%), Gaps = 9/90 (10%)
Query: 305 HSEGVTSLVFSRDGSQILSTSFDSTARIH----GLKSGKL----LKEFRGHSSYVNDAIF 356
H++ V S+ ++ DGS ST D T ++ G K+G LK HS V +
Sbjct: 189 HTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNV-AHSGSVFGLTW 247
Query: 357 TNDGSRVVTASSDCTVKVWDLKSTDCLQTF 386
+ DG+++ +AS+D T+K+W++ + +T
Sbjct: 248 SPDGTKIASASADKTIKIWNVATLKVEKTI 277
Score = 37.4 bits (85), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 46/218 (21%), Positives = 79/218 (36%), Gaps = 54/218 (24%)
Query: 156 PPSRLMALIGQALKWQQHQGLLPPGTQFD---------LFRGTAAMKQDV-EDMYPTTLS 205
PP + + G+ K+ P G+ F L+ G K V ED ++
Sbjct: 178 PPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVA 237
Query: 206 HTIK-FGTKSHAECARFSPDGQFLVSCSFDGFIEVWDYLSGKLKKDLQY----------- 253
H+ FG +SPDG + S S D I++W+ + K++K +
Sbjct: 238 HSGSVFGLT-------WSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGI 290
Query: 254 ----QA--------------------DETFMMHDETVLCIEFSRDSEMLASGSQDGKIKV 289
QA D+ H++ + + S D + L S +G I
Sbjct: 291 IWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINS 350
Query: 290 WRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFD 327
W I +G R H+ +T + + G + + S+D
Sbjct: 351 WDISTGISNRVFPDVHATMITGIKTTSKG-DLFTVSWD 387
Score = 35.8 bits (81), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 5/73 (6%)
Query: 221 FSPDGQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLAS 280
FS +G FLV+ D +V Y + + + ++ H V C+ +S D+ LA+
Sbjct: 499 FSNNGAFLVAT--DQSRKVIPY---SVANNFELAHTNSWTFHTAKVACVSWSPDNVRLAT 553
Query: 281 GSQDGKIKVWRIR 293
GS D + VW +
Sbjct: 554 GSLDNSVIVWNMN 566
Score = 32.0 bits (71), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 51/128 (39%), Gaps = 11/128 (8%)
Query: 392 LRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQVVKSFSSGKREGGDFVAAC-VS 450
L G ++NSV P P I+ + +++ I +G K F S E FV + +
Sbjct: 143 LTGQARAMNSVDFKPSRPFRIISGSDDNTVAI--FEGPPFK-FKSTFGEHTKFVHSVRYN 199
Query: 451 PKGEWIYCVGEDRNLYCFSHQSGKLEHLMK-------VHEKDVIGVTHHPHRNLLATYGE 503
P G G D + ++ G + + H V G+T P +A+
Sbjct: 200 PDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASA 259
Query: 504 DCTMKLWK 511
D T+K+W
Sbjct: 260 DKTIKIWN 267
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 55/120 (45%), Gaps = 2/120 (1%)
Query: 259 FMMHDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDG 318
+ H + +EF+ +++L S S DG +++W +G + HS+ + S + D
Sbjct: 243 LIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNS-QNCFYGHSQSIVSASWVGD- 300
Query: 319 SQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLK 378
+++S S D + R+ LK LL + + DG + A D V V+DLK
Sbjct: 301 DKVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLK 360
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 54/100 (54%), Gaps = 7/100 (7%)
Query: 266 VLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTS 325
V C+ +S D + +G ++G++++W ++G L L H + S+ +++DG+ I+S
Sbjct: 111 VTCLAWSHDGNSIVTGVENGELRLWN-KTGALLNVL-NFHRAPIVSVKWNKDGTHIISMD 168
Query: 326 FDSTARIHGLKSGKLLKEFR----GHSSYVNDAIFTNDGS 361
++ + + SG +++ F G SS +N + DGS
Sbjct: 169 VENVTILWNVISGTVMQHFELKETGGSS-INAENHSGDGS 207
Score = 35.8 bits (81), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 38/181 (20%), Positives = 77/181 (42%), Gaps = 30/181 (16%)
Query: 212 TKSHAECARFSPDGQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEF 271
T + C +S DG +V+ +G + +W+ +G L L + H ++ +++
Sbjct: 107 TTNQVTCLAWSHDGNSIVTGVENGELRLWNK-TGALLNVLNF--------HRAPIVSVKW 157
Query: 272 SRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEG--VTSLVFSRDGSQILSTSF--D 327
++D + S + +W + SG ++ E + G + + S DGS + + D
Sbjct: 158 NKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDD 217
Query: 328 STARIHGLK-------------SGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKV 374
I G K +GKL+ GH ++ F + +++AS D T+++
Sbjct: 218 DKFVIPGPKGAIFVYQITEKTPTGKLI----GHHGPISVLEFNDTNKLLLSASDDGTLRI 273
Query: 375 W 375
W
Sbjct: 274 W 274
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 33/138 (23%), Positives = 61/138 (44%), Gaps = 12/138 (8%)
Query: 256 DETFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRR-LERAHSEG-----V 309
DE+ + + E +R E Q+GK K W++ LR + S G V
Sbjct: 57 DESILAYGEKNSVARLARIVET----DQEGK-KYWKLTIIAELRHPFALSASSGKTTNQV 111
Query: 310 TSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSD 369
T L +S DG+ I++ + R+ K+G LL H + + + DG+ +++ +
Sbjct: 112 TCLAWSHDGNSIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVE 170
Query: 370 CTVKVWDLKSTDCLQTFK 387
+W++ S +Q F+
Sbjct: 171 NVTILWNVISGTVMQHFE 188
>pdb|1PGU|A Chain A, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
pdb|1PGU|B Chain B, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
Length = 615
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/158 (24%), Positives = 73/158 (46%), Gaps = 12/158 (7%)
Query: 221 FSPD-GQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLA 279
FSPD G+F+++ D I +D SG+ L+Y D+ + + + + DS+ A
Sbjct: 214 FSPDSGEFVITVGSDRKISCFDGKSGEF---LKYIEDDQEPVQG-GIFALSW-LDSQKFA 268
Query: 280 SGSQDGKIKVWRIRSGQCLRR--LERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKS 337
+ D I+VW + + +C+++ L++ V + +I+S S D T + L
Sbjct: 269 TVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGH 328
Query: 338 GKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVW 375
++LK GH N I + +++ S D + W
Sbjct: 329 DEVLKTISGH----NKGITALTVNPLISGSYDGRIXEW 362
Score = 36.6 bits (83), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 53/127 (41%), Gaps = 11/127 (8%)
Query: 392 LRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQVVKSFSSGKR---EGGDFVAAC 448
+ G +N+ HL P S+ QG K FS+ R + G FV
Sbjct: 156 VSGHSQRINACHLKQSRPXRSXTVGDDGSVVFY--QGPPFK-FSASDRTHHKQGSFVRDV 212
Query: 449 -VSP-KGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIG---VTHHPHRNLLATYGE 503
SP GE++ VG DR + CF +SG+ ++ ++ V G AT G
Sbjct: 213 EFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGA 272
Query: 504 DCTMKLW 510
D T+++W
Sbjct: 273 DATIRVW 279
Score = 35.4 bits (80), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 6/88 (6%)
Query: 305 HSEG--VTSLVFSRD-GSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTN--- 358
H +G V + FS D G +++ D KSG+ LK V IF
Sbjct: 203 HKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL 262
Query: 359 DGSRVVTASSDCTVKVWDLKSTDCLQTF 386
D + T +D T++VWD+ ++ C+Q +
Sbjct: 263 DSQKFATVGADATIRVWDVTTSKCVQKW 290
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/173 (23%), Positives = 79/173 (45%), Gaps = 24/173 (13%)
Query: 221 FSPDGQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLAS 280
+ D S SFD ++VWD + L+ + +ET H + + + ++A
Sbjct: 108 YPHDTGMFTSSSFDKTLKVWD--TNTLQTADVFNFEETVYSHHMSPVSTKHC----LVAV 161
Query: 281 GSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILST-SFDSTARI------- 332
G++ K+++ ++SG C L+ H + + ++ +S IL+T S DS ++
Sbjct: 162 GTRGPKVQLCDLKSGSCSHILQ-GHRQEILAVSWSPRYDYILATASADSRVKLWDVRRAS 220
Query: 333 ---------HGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWD 376
+G KS + H+ VN FT+DG ++T +D +++W+
Sbjct: 221 GCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWN 273
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 41/201 (20%), Positives = 87/201 (43%), Gaps = 14/201 (6%)
Query: 188 GTAAMKQDVEDMYPTTLSHTIKFGTKSHAECARFSPDGQF-LVSCSFDGFIEVWDY--LS 244
GT K + D+ + SH ++ G + +SP + L + S D +++WD S
Sbjct: 162 GTRGPKVQLCDLKSGSCSHILQ-GHRQEILAVSWSPRYDYILATASADSRVKLWDVRRAS 220
Query: 245 GKLKKDLQYQADETFMM------HDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQC- 297
G L Q+ ++ + H+ V + F+ D L + D ++++W +G+
Sbjct: 221 GCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENT 280
Query: 298 ---LRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDA 354
++ +G+ V S+ + + ST ++ + SG+ + +GH V+
Sbjct: 281 LVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCC 340
Query: 355 IFTNDGSRVVTASSDCTVKVW 375
+F ++ + + S DC + W
Sbjct: 341 VFQSNFQELYSGSRDCNILAW 361
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 66/323 (20%), Positives = 123/323 (38%), Gaps = 48/323 (14%)
Query: 224 DGQFLVSCSFDGFIEVWD--------YLSGKLKKDLQYQADETFMMHDETVLCIEFSRDS 275
+G++++S DG I ++D Y + K + + ETV + D+
Sbjct: 55 EGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQW--YPHDT 112
Query: 276 EMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHG- 334
M S S D +KVW + L+ A V+S S + + G
Sbjct: 113 GMFTSSSFDKTLKVWDTNT------LQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGP 166
Query: 335 ------LKSGKLLKEFRGHSSYVNDAIFTNDGSRVV-TASSDCTVKVWDL-KSTDCLQTF 386
LKSG +GH + ++ ++ TAS+D VK+WD+ +++ CL T
Sbjct: 167 KVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITL 226
Query: 387 -----KPPPPLRGGDASVN-----------SVHLFPKNPDH-IVVCNKTSSIYIMTLQGQ 429
K + + + N +HL D+ + + N ++ + G+
Sbjct: 227 DQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGK 286
Query: 430 VVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGV 489
V + ++G F +C E+++ V + ++ SG+ ++K H K V
Sbjct: 287 VCNN----SKKGLKFTVSC-GCSSEFVF-VPYGSTIAVYTVYSGEQITMLKGHYKTVDCC 340
Query: 490 THHPHRNLLATYGEDCTMKLWKP 512
+ L + DC + W P
Sbjct: 341 VFQSNFQELYSGSRDCNILAWVP 363
>pdb|1PI6|A Chain A, Yeast Actin Interacting Protein 1 (Aip1), Orthorhombic
Crystal Form
Length = 615
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 74/162 (45%), Gaps = 12/162 (7%)
Query: 221 FSPD-GQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLA 279
FSPD G+F+++ D I +D SG+ L+Y D+ + + + + DS+ A
Sbjct: 214 FSPDSGEFVITVGSDRKISCFDGKSGEF---LKYIEDDQEPVQG-GIFALSW-LDSQKFA 268
Query: 280 SGSQDGKIKVWRIRSGQCLRR--LERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKS 337
+ D I+VW + + +C+++ L++ V + +I+S S D T + L
Sbjct: 269 TVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGH 328
Query: 338 GKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKS 379
++LK GH N I + +++ S D + W S
Sbjct: 329 DEVLKTISGH----NKGITALTVNPLISGSYDGRIMEWSSSS 366
Score = 36.6 bits (83), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 54/127 (42%), Gaps = 11/127 (8%)
Query: 392 LRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQVVKSFSSGKR---EGGDFVAAC 448
+ G +N+ HL P + S+ QG K FS+ R + G FV
Sbjct: 156 VSGHSQRINACHLKQSRPMRSMTVGDDGSVVFY--QGPPFK-FSASDRTHHKQGSFVRDV 212
Query: 449 -VSP-KGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIG---VTHHPHRNLLATYGE 503
SP GE++ VG DR + CF +SG+ ++ ++ V G AT G
Sbjct: 213 EFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGA 272
Query: 504 DCTMKLW 510
D T+++W
Sbjct: 273 DATIRVW 279
Score = 35.4 bits (80), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 6/88 (6%)
Query: 305 HSEG--VTSLVFSRD-GSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTN--- 358
H +G V + FS D G +++ D KSG+ LK V IF
Sbjct: 203 HKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL 262
Query: 359 DGSRVVTASSDCTVKVWDLKSTDCLQTF 386
D + T +D T++VWD+ ++ C+Q +
Sbjct: 263 DSQKFATVGADATIRVWDVTTSKCVQKW 290
>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
pdb|3ODT|B Chain B, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
Length = 313
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 59/252 (23%), Positives = 109/252 (43%), Gaps = 71/252 (28%)
Query: 278 LASGSQDGKIKVWR---------IRSGQ------CLRRLER------------------- 303
+AS S+DG +++W + +GQ C +
Sbjct: 32 VASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTXINGVPLFAT 91
Query: 304 ----------AHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVND 353
H V SL F +DG ++S S+D TA++ K G L+ + H++ V D
Sbjct: 92 SGEDPLYTLIGHQGNVCSLSF-QDG-VVISGSWDKTAKV--WKEGSLVYNLQAHNASVWD 147
Query: 354 A-IFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSV--HLFPKNPD 410
A + + ++ +TAS+D T+K+W ++ ++TF N V HL +
Sbjct: 148 AKVVSFSENKFLTASADKTIKLW--QNDKVIKTFSGIH---------NDVVRHLAVVDDG 196
Query: 411 HIVVCNKTSSIYIMTLQ-GQVVKSFSSGKREGGDFVAACVS--PKGEWIYCVGEDRNLYC 467
H + C+ I ++ G V++++ EG + C+ P G+ + C GEDR +
Sbjct: 197 HFISCSNDGLIKLVDXHTGDVLRTY-----EGHESFVYCIKLLPNGDIVSC-GEDRTVRI 250
Query: 468 FSHQSGKLEHLM 479
+S ++G L+ ++
Sbjct: 251 WSKENGSLKQVI 262
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 84/176 (47%), Gaps = 16/176 (9%)
Query: 258 TFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRD 317
T + H V + F ++ SGS D KVW+ G + L+ ++ + V S
Sbjct: 99 TLIGHQGNVCSLSFQ--DGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFS 154
Query: 318 GSQILSTSFDSTARIHGLKSGKLLKEFRG-HSSYVNDAIFTNDGSRVVTASSDCTVKVWD 376
++ L+ S D T ++ ++ K++K F G H+ V +DG ++ S+D +K+ D
Sbjct: 155 ENKFLTASADKTIKL--WQNDKVIKTFSGIHNDVVRHLAVVDDG-HFISCSNDGLIKLVD 211
Query: 377 LKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQVVK 432
+ D L+T++ G ++ V + L P N D IV C + ++ I + + +K
Sbjct: 212 XHTGDVLRTYE------GHESFVYCIKLLP-NGD-IVSCGEDRTVRIWSKENGSLK 259
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 57/109 (52%), Gaps = 12/109 (11%)
Query: 224 DGQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQ 283
DG F +SCS DG I++ D +G + + T+ H+ V CI+ + ++++ G +
Sbjct: 195 DGHF-ISCSNDGLIKLVDXHTGDVLR--------TYEGHESFVYCIKLLPNGDIVSCG-E 244
Query: 284 DGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARI 332
D +++W +G L+++ + + S+ +G I+ +S D+ RI
Sbjct: 245 DRTVRIWSKENGS-LKQVITLPAISIWSVDCXSNGDIIVGSS-DNLVRI 291
>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1
Length = 402
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 50/103 (48%), Gaps = 10/103 (9%)
Query: 226 QFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQDG 285
L+S D I VWD +G L +H +T+ +++SRD ++ + +D
Sbjct: 145 NVLLSAGXDNVILVWDVGTGAAVLTLGPD------VHPDTIYSVDWSRDGALICTSCRDK 198
Query: 286 KIKVWRIRSGQCLRRLERAHSEGVTSL--VFSRDGSQILSTSF 326
+++V R G + +R H EG + VF +G +IL+T F
Sbjct: 199 RVRVIEPRKGTVVAEKDRPH-EGTRPVHAVFVSEG-KILTTGF 239
Score = 28.9 bits (63), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 478 LMKVHEKDVIGVTHHPHR-NLLATYGEDCTMKLWK 511
L+ H V+ + PH N++A+ EDCT+ +W+
Sbjct: 76 LVXGHTAPVLDIAWXPHNDNVIASGSEDCTVMVWE 110
>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form
Length = 402
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 50/103 (48%), Gaps = 10/103 (9%)
Query: 226 QFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQDG 285
L+S D I VWD +G L +H +T+ +++SRD ++ + +D
Sbjct: 145 NVLLSAGCDNVILVWDVGTGAAVLTLGPD------VHPDTIYSVDWSRDGALICTSCRDK 198
Query: 286 KIKVWRIRSGQCLRRLERAHSEGVTSL--VFSRDGSQILSTSF 326
+++V R G + +R H EG + VF +G +IL+T F
Sbjct: 199 RVRVIEPRKGTVVAEKDRPH-EGTRPVHAVFVSEG-KILTTGF 239
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/162 (23%), Positives = 66/162 (40%), Gaps = 30/162 (18%)
Query: 281 GSQDGKIKVWRIRSGQCL---RRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKS 337
S G +++W I + L + + H + V +L DG+Q +S D + ++ L
Sbjct: 111 ASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQ 170
Query: 338 GKLLKEFRGHSSYVN--------DAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPP 389
+LK + HSS VN D IF ++ D + +WD T KP
Sbjct: 171 KAVLKSYNAHSSEVNCVAACPGKDTIF-------LSCGEDGRILLWD--------TRKPK 215
Query: 390 PPLR----GGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQ 427
P R D SV P+ D ++T ++ ++ ++
Sbjct: 216 PATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIK 257
Score = 28.9 bits (63), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 47/113 (41%), Gaps = 9/113 (7%)
Query: 214 SHAECARFSP--DGQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEF 271
S C P D FL SC DG I +WD K + + A +T T +
Sbjct: 182 SEVNCVAACPGKDTIFL-SCGEDGRILLWDTRKPKPATRIDFCASDTI----PTSVTWHP 236
Query: 272 SRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILST 324
+D + A G + G + + I++ + HS+ +T L +S S L++
Sbjct: 237 EKD-DTFACGDETGNVSLVNIKNPDSA-QTSAVHSQNITGLAYSYHSSPFLAS 287
Score = 28.5 bits (62), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 38/89 (42%), Gaps = 11/89 (12%)
Query: 228 LVSCSFDGFIEVWDYLSGK---LKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQD 284
++ S G +E+W+ L + + K +Y+ HD+ V + D SG +D
Sbjct: 108 ILVASDSGAVELWEILEKESLLVNKFAKYE-------HDDIVKTLSVFSDGTQAVSGGKD 160
Query: 285 GKIKVWRIRSGQCLRRLERAHSEGVTSLV 313
+KVW + L+ AHS V +
Sbjct: 161 FSVKVWDLSQKAVLKSY-NAHSSEVNCVA 188
>pdb|4I79|A Chain A, Crystal Structure Of Human Nup43
pdb|4I79|B Chain B, Crystal Structure Of Human Nup43
Length = 399
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/162 (22%), Positives = 71/162 (43%), Gaps = 26/162 (16%)
Query: 273 RDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARI 332
+ E++ G +DG+I ++R + +R ++ A S + ++ F R +IL+ + +I
Sbjct: 159 NNPEIVTVG-EDGRINLFRADHKEAVRTIDNADSSTLHAVTFLRT-PEILTVNSIGQLKI 216
Query: 333 -----HGLKSGKLLKEFRGHSSYVNDAI-------FTNDGSRVVTASSDCTVKVWDLKST 380
G + ++L S D + N V T D + +WD++
Sbjct: 217 WDFRQQGNEPSQIL-------SLTGDRVPLHCVDRHPNQQHVVATGGQDGMLSIWDVR-- 267
Query: 381 DCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIY 422
Q P L+ +A + VH P NP+H+ C++ S++
Sbjct: 268 ---QGTMPVSLLKAHEAEMWEVHFHPSNPEHLFTCSEDGSLW 306
>pdb|3VU4|A Chain A, Crystal Structure Of Kluyvelomyces Marxianus Hsv2
pdb|3VU4|B Chain B, Crystal Structure Of Kluyvelomyces Marxianus Hsv2
Length = 355
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 60/142 (42%), Gaps = 18/142 (12%)
Query: 262 HDETVLCIEFSRDSEMLASGSQDGK-IKVWRIRSGQCLRRLERAHSEG-VTSLVFSRDGS 319
H + + +R S+M+A+ SQDG I+V++ G +R R V + +S DGS
Sbjct: 194 HTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGS 253
Query: 320 QILSTS-----------FDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTND---GSRVVT 365
++ S D + H LK +K F+ S N + + G ++
Sbjct: 254 KLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAW 313
Query: 366 ASSDCTVKVWDLKSTDCLQTFK 387
S V VW T ++TFK
Sbjct: 314 ISESSLVVVW--PHTRMIETFK 333
>pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The
Eed-Ezh2 Polycomb Complex
pdb|3JZG|A Chain A, Structure Of Eed In Complex With H3k27me3
pdb|3JZH|A Chain A, Eed-H3k79me3
Length = 402
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/133 (24%), Positives = 58/133 (43%), Gaps = 9/133 (6%)
Query: 263 DETVLCIEFSRDSE----MLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVF-SRD 317
DE ++ DS +LA G I++ + QC++ H + L F RD
Sbjct: 105 DENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYV-GHGNAINELKFHPRD 163
Query: 318 GSQILSTSFDSTARIHGLKSGKLLKEF---RGHSSYVNDAIFTNDGSRVVTASSDCTVKV 374
+ +LS S D R+ +++ L+ F GH V A + G ++++ D ++K+
Sbjct: 164 PNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKL 223
Query: 375 WDLKSTDCLQTFK 387
W + S + K
Sbjct: 224 WRINSKRMMNAIK 236
Score = 35.8 bits (81), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 60/130 (46%), Gaps = 21/130 (16%)
Query: 213 KSHAECARFSPDGQFLVSCSFDGFIEVWDYLSGKLKKDLQ----YQADETFMMHDETVLC 268
+++ +C R+ G ++S S + I W GK++ D+ +++ T + + C
Sbjct: 267 RNYVDCVRWL--GDLILSKSCENAIVCWK--PGKMEDDIDKIKPSESNVTILGRFDYSQC 322
Query: 269 ----IEFSRD--SEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQIL 322
+ FS D +MLA G+Q GK+ VW + +E H T+L + G+ I
Sbjct: 323 DIWYMRFSMDFWQKMLALGNQVGKLYVWDL-------EVEDPHKAKCTTLTHHKCGAAIR 375
Query: 323 STSFDSTARI 332
TSF + I
Sbjct: 376 QTSFSRDSSI 385
>pdb|2QXV|A Chain A, Structural Basis Of Ezh2 Recognition By Eed
Length = 361
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/133 (24%), Positives = 58/133 (43%), Gaps = 9/133 (6%)
Query: 263 DETVLCIEFSRDSE----MLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVF-SRD 317
DE ++ DS +LA G I++ + QC++ H + L F RD
Sbjct: 64 DENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYV-GHGNAINELKFHPRD 122
Query: 318 GSQILSTSFDSTARIHGLKSGKLLKEF---RGHSSYVNDAIFTNDGSRVVTASSDCTVKV 374
+ +LS S D R+ +++ L+ F GH V A + G ++++ D ++K+
Sbjct: 123 PNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKL 182
Query: 375 WDLKSTDCLQTFK 387
W + S + K
Sbjct: 183 WRINSKRMMNAIK 195
Score = 35.4 bits (80), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 60/130 (46%), Gaps = 21/130 (16%)
Query: 213 KSHAECARFSPDGQFLVSCSFDGFIEVWDYLSGKLKKDLQ----YQADETFMMHDETVLC 268
+++ +C R+ G ++S S + I W GK++ D+ +++ T + + C
Sbjct: 226 RNYVDCVRWL--GDLILSKSCENAIVCWK--PGKMEDDIDKIKPSESNVTILGRFDYSQC 281
Query: 269 ----IEFSRD--SEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQIL 322
+ FS D +MLA G+Q GK+ VW + +E H T+L + G+ I
Sbjct: 282 DIWYMRFSMDFWQKMLALGNQVGKLYVWDL-------EVEDPHKAKCTTLTHHKCGAAIR 334
Query: 323 STSFDSTARI 332
TSF + I
Sbjct: 335 QTSFSRDSSI 344
>pdb|3JZN|A Chain A, Structure Of Eed In Apo Form
pdb|3K26|A Chain A, Complex Structure Of Eed And Trimethylated H3k4
pdb|3K27|A Chain A, Complex Structure Of Eed And Trimethylated H3k9
Length = 366
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/133 (24%), Positives = 58/133 (43%), Gaps = 9/133 (6%)
Query: 263 DETVLCIEFSRDSE----MLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVF-SRD 317
DE ++ DS +LA G I++ + QC++ H + L F RD
Sbjct: 69 DENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYV-GHGNAINELKFHPRD 127
Query: 318 GSQILSTSFDSTARIHGLKSGKLLKEF---RGHSSYVNDAIFTNDGSRVVTASSDCTVKV 374
+ +LS S D R+ +++ L+ F GH V A + G ++++ D ++K+
Sbjct: 128 PNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKL 187
Query: 375 WDLKSTDCLQTFK 387
W + S + K
Sbjct: 188 WRINSKRMMNAIK 200
Score = 35.4 bits (80), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 60/130 (46%), Gaps = 21/130 (16%)
Query: 213 KSHAECARFSPDGQFLVSCSFDGFIEVWDYLSGKLKKDLQ----YQADETFMMHDETVLC 268
+++ +C R+ G ++S S + I W GK++ D+ +++ T + + C
Sbjct: 231 RNYVDCVRWL--GDLILSKSCENAIVCWK--PGKMEDDIDKIKPSESNVTILGRFDYSQC 286
Query: 269 ----IEFSRD--SEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQIL 322
+ FS D +MLA G+Q GK+ VW + +E H T+L + G+ I
Sbjct: 287 DIWYMRFSMDFWQKMLALGNQVGKLYVWDL-------EVEDPHKAKCTTLTHHKCGAAIR 339
Query: 323 STSFDSTARI 332
TSF + I
Sbjct: 340 QTSFSRDSSI 349
>pdb|3IIW|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k27 Peptide
Length = 365
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/133 (24%), Positives = 58/133 (43%), Gaps = 9/133 (6%)
Query: 263 DETVLCIEFSRDSE----MLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVF-SRD 317
DE ++ DS +LA G I++ + QC++ H + L F RD
Sbjct: 68 DENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYV-GHGNAINELKFHPRD 126
Query: 318 GSQILSTSFDSTARIHGLKSGKLLKEF---RGHSSYVNDAIFTNDGSRVVTASSDCTVKV 374
+ +LS S D R+ +++ L+ F GH V A + G ++++ D ++K+
Sbjct: 127 PNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKL 186
Query: 375 WDLKSTDCLQTFK 387
W + S + K
Sbjct: 187 WRINSKRMMNAIK 199
Score = 35.4 bits (80), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 60/130 (46%), Gaps = 21/130 (16%)
Query: 213 KSHAECARFSPDGQFLVSCSFDGFIEVWDYLSGKLKKDLQ----YQADETFMMHDETVLC 268
+++ +C R+ G ++S S + I W GK++ D+ +++ T + + C
Sbjct: 230 RNYVDCVRWL--GDLILSKSCENAIVCWK--PGKMEDDIDKIKPSESNVTILGRFDYSQC 285
Query: 269 ----IEFSRD--SEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQIL 322
+ FS D +MLA G+Q GK+ VW + +E H T+L + G+ I
Sbjct: 286 DIWYMRFSMDFWQKMLALGNQVGKLYVWDL-------EVEDPHKAKCTTLTHHKCGAAIR 338
Query: 323 STSFDSTARI 332
TSF + I
Sbjct: 339 QTSFSRDSSI 348
>pdb|3IIY|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H1k26 Peptide
pdb|3IJ0|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k9 Peptide
pdb|3IJ1|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H4k20 Peptide
pdb|3IJC|A Chain A, Crystal Structure Of Eed In Complex With Ndsb-195
Length = 365
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 32/133 (24%), Positives = 58/133 (43%), Gaps = 9/133 (6%)
Query: 263 DETVLCIEFSRDSE----MLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVF-SRD 317
DE ++ DS +LA G I++ + QC++ H + L F RD
Sbjct: 68 DENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYV-GHGNAINELKFHPRD 126
Query: 318 GSQILSTSFDSTARIHGLKSGKLLKEF---RGHSSYVNDAIFTNDGSRVVTASSDCTVKV 374
+ +LS S D R+ +++ L+ F GH V A + G ++++ D ++K+
Sbjct: 127 PNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKL 186
Query: 375 WDLKSTDCLQTFK 387
W + S + K
Sbjct: 187 WRINSKRMMNAIK 199
Score = 35.4 bits (80), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 60/130 (46%), Gaps = 21/130 (16%)
Query: 213 KSHAECARFSPDGQFLVSCSFDGFIEVWDYLSGKLKKDLQ----YQADETFMMHDETVLC 268
+++ +C R+ G ++S S + I W GK++ D+ +++ T + + C
Sbjct: 230 RNYVDCVRWL--GDLILSKSCENAIVCWK--PGKMEDDIDKIKPSESNVTILGRFDYSQC 285
Query: 269 ----IEFSRD--SEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQIL 322
+ FS D +MLA G+Q GK+ VW + +E H T+L + G+ I
Sbjct: 286 DIWYMRFSTDFWQKMLALGNQVGKLYVWDL-------EVEDPHKAKCTTLTHHKCGAAIR 338
Query: 323 STSFDSTARI 332
TSF + I
Sbjct: 339 QTSFSRDSSI 348
>pdb|4E5Z|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 436
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 56/126 (44%), Gaps = 6/126 (4%)
Query: 269 IEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILST-SFD 327
++ S S M+ +G G + + + G+ L L R H + VT + + L+T S D
Sbjct: 215 LDVSASSRMVVTGDNVGNVILLNM-DGKELWNL-RMHKKKVTHVALNPCCDWFLATASVD 272
Query: 328 STARIHGLKSGKLLKEFR---GHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQ 384
T +I L+ + F H VN A F+ DG+R++T ++V+ DC
Sbjct: 273 QTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPL 332
Query: 385 TFKPPP 390
P P
Sbjct: 333 GLIPHP 338
>pdb|4E54|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 435
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 56/126 (44%), Gaps = 6/126 (4%)
Query: 269 IEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILST-SFD 327
++ S S M+ +G G + + + G+ L L R H + VT + + L+T S D
Sbjct: 215 LDVSASSRMVVTGDNVGNVILLNM-DGKELWNL-RMHKKKVTHVALNPCCDWFLATASVD 272
Query: 328 STARIHGLKSGKLLKEFR---GHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQ 384
T +I L+ + F H VN A F+ DG+R++T ++V+ DC
Sbjct: 273 QTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPL 332
Query: 385 TFKPPP 390
P P
Sbjct: 333 GLIPHP 338
>pdb|3EI4|B Chain B, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|D Chain D, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|F Chain F, Structure Of The Hsddb1-Hsddb2 Complex
Length = 436
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 59/132 (44%), Gaps = 18/132 (13%)
Query: 269 IEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILST-SFD 327
++ S S M+ +G G + + + G+ L L R H + VT + + L+T S D
Sbjct: 216 LDVSASSRMVVTGDNVGNVILLNM-DGKELWNL-RMHKKKVTHVALNPCCDWFLATASVD 273
Query: 328 STARIHGLKSGKLLKEFRGHSSY---------VNDAIFTNDGSRVVTASSDCTVKVWDLK 378
T +I L+ + RG +S+ VN A F+ DG+R++T ++V+
Sbjct: 274 QTVKIWDLR------QVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSAS 327
Query: 379 STDCLQTFKPPP 390
DC P P
Sbjct: 328 QWDCPLGLIPHP 339
>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 344
Score = 35.8 bits (81), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 36/165 (21%), Positives = 63/165 (38%), Gaps = 8/165 (4%)
Query: 347 HSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFP 406
H V+ + G++ V+ S D +KVWDL L ++ R A V V P
Sbjct: 126 HDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSY------RAHAAQVTCVAASP 179
Query: 407 KNPDHIVVCNKTSSIYIMTLQGQVVKSFSSGKREGGDFVAACVSPKGEWIYCVG-EDRNL 465
+ C++ + I + + S G + P+ ++ G E+ +
Sbjct: 180 HKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTV 239
Query: 466 YCFSHQSGKLEHLMKVHEKDVIGVTHHPHR-NLLATYGEDCTMKL 509
+S VH + V G+ PH LA+ EDC++ +
Sbjct: 240 SLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAV 284
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 39/177 (22%), Positives = 75/177 (42%), Gaps = 25/177 (14%)
Query: 217 ECARFSPDGQFLVSCSFDGFIEVWDYLSGK-------LKKDLQYQADETF----MMHDET 265
E AR+ DG L+ S LSG+ L KD +E F + +
Sbjct: 34 EAARYRSDGALLLGAS---------SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAG 84
Query: 266 VLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCL---RRLERAHSEGVTSLVFSRDGSQIL 322
V + + + +L + S G +++W + + L + + H + V+++ G+Q +
Sbjct: 85 VADLTWVGERGILVA-SDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAV 143
Query: 323 STSFDSTARIHGLKSGKLLKEFRGHSSYVN-DAIFTNDGSRVVTASSDCTVKVWDLK 378
S S D ++ L +L +R H++ V A + S ++ S D + +WD +
Sbjct: 144 SGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTR 200
>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 297
Score = 35.8 bits (81), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 38/174 (21%), Positives = 70/174 (40%), Gaps = 29/174 (16%)
Query: 225 GQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFS--RDSEMLASGS 282
G L SCS+DG + +W +G+ + +H +V ++++ ML S
Sbjct: 67 GTILASCSYDGKVMIWKEENGR------WSQIAVHAVHSASVNSVQWAPHEYGPMLLVAS 120
Query: 283 QDGKIKVWRIR-SGQCLRRLERAHSEGVTSLVFS-------------RDGSQILSTSFDS 328
DGK+ V + +G + AH+ GV S ++ ++ + ++ D+
Sbjct: 121 SDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADN 180
Query: 329 TARIHGLKSGK----LLKEFRGHSSYVNDAIFTND---GSRVVTASSDCTVKVW 375
+I S L GHS +V D ++ S + + S D T +W
Sbjct: 181 LVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIW 234
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 35.8 bits (81), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 36/166 (21%), Positives = 71/166 (42%), Gaps = 24/166 (14%)
Query: 230 SCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSE-MLASGSQDGKIK 288
S + D + +WD + K T H V C+ F+ SE +LA+GS D +
Sbjct: 249 SVADDQKLMIWDTRNNNTSK-----PSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVA 303
Query: 289 VWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKE----- 343
+W +R+ + +H + + + +S IL++S + R+H K+ +E
Sbjct: 304 LWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASS-GTDRRLHVWDLSKIGEEQSTED 362
Query: 344 -----------FRGHSSYVNDAIFT-NDGSRVVTASSDCTVKVWDL 377
GH++ ++D + N+ + + S D ++VW +
Sbjct: 363 AEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQM 408
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 35.4 bits (80), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 36/166 (21%), Positives = 71/166 (42%), Gaps = 24/166 (14%)
Query: 230 SCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSE-MLASGSQDGKIK 288
S + D + +WD + K T H V C+ F+ SE +LA+GS D +
Sbjct: 251 SVADDQKLMIWDTRNNNTSK-----PSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVA 305
Query: 289 VWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKE----- 343
+W +R+ + +H + + + +S IL++S + R+H K+ +E
Sbjct: 306 LWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASS-GTDRRLHVWDLSKIGEEQSTED 364
Query: 344 -----------FRGHSSYVNDAIFT-NDGSRVVTASSDCTVKVWDL 377
GH++ ++D + N+ + + S D ++VW +
Sbjct: 365 AEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQM 410
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 35.4 bits (80), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 36/166 (21%), Positives = 71/166 (42%), Gaps = 24/166 (14%)
Query: 230 SCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSE-MLASGSQDGKIK 288
S + D + +WD + K T H V C+ F+ SE +LA+GS D +
Sbjct: 253 SVADDQKLMIWDTRNNNTSK-----PSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVA 307
Query: 289 VWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKE----- 343
+W +R+ + +H + + + +S IL++S + R+H K+ +E
Sbjct: 308 LWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASS-GTDRRLHVWDLSKIGEEQSTED 366
Query: 344 -----------FRGHSSYVNDAIFT-NDGSRVVTASSDCTVKVWDL 377
GH++ ++D + N+ + + S D ++VW +
Sbjct: 367 AEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQM 412
>pdb|1S4U|X Chain X, Crystal Structure Analysis Of The Beta-Propeller Protein
Ski8p
Length = 407
Score = 35.4 bits (80), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 60/134 (44%), Gaps = 25/134 (18%)
Query: 277 MLASGSQDGKIKVWRIRSGQCLRRLERAHS-----EGVTSLVFSRDGSQILSTSFDSTA- 330
++A+G +G +++ + + + L E HS + S+ FS GS +L+ + DS +
Sbjct: 209 LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGS-LLAIAHDSNSF 267
Query: 331 ------------RIHGLK-----SGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVK 373
RI L S L EF HSS+V F + G + +A D ++
Sbjct: 268 GCITLYETEFGERIGSLSVPTHSSQASLGEF-AHSSWVMSLSFNDSGETLCSAGWDGKLR 326
Query: 374 VWDLKSTDCLQTFK 387
WD+K+ + + T
Sbjct: 327 FWDVKTKERITTLN 340
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 44/93 (47%), Gaps = 9/93 (9%)
Query: 207 TIKFGTKSHAECARFSPDGQFLVSCSFDGFIEVWD--YLSGKLKKDLQYQ--ADETFMMH 262
T G A+ S F VSCS DG+++VWD L + KD Y ++ + H
Sbjct: 18 TANAGKAHDADIFSVSACNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHH 77
Query: 263 DETVLCIEFSRDSE---MLASGSQDGKIKVWRI 292
+ + IE RD+ ++A+ S G + +RI
Sbjct: 78 VDVLQAIE--RDAFELCLVATTSFSGDLLFYRI 108
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 40/91 (43%), Gaps = 10/91 (10%)
Query: 220 RFSPDGQFLV----SCSFDGFIEVWDYLSGKLKKDLQY-----QADETFMMHDETVLCIE 270
+FSP G L S SF G I +++ G+ L QA H V+ +
Sbjct: 250 KFSPQGSLLAIAHDSNSF-GCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLS 308
Query: 271 FSRDSEMLASGSQDGKIKVWRIRSGQCLRRL 301
F+ E L S DGK++ W +++ + + L
Sbjct: 309 FNDSGETLCSAGWDGKLRFWDVKTKERITTL 339
>pdb|1SQ9|A Chain A, Structure Of Ski8p, A Wd Repeat Protein Involved In Mrna
Degradation And Meiotic Recombination
Length = 397
Score = 35.0 bits (79), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 60/134 (44%), Gaps = 25/134 (18%)
Query: 277 MLASGSQDGKIKVWRIRSGQCLRRLERAHS-----EGVTSLVFSRDGSQILSTSFDSTA- 330
++A+G +G +++ + + + L E HS + S+ FS GS +L+ + DS +
Sbjct: 199 LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGS-LLAIAHDSNSF 257
Query: 331 ------------RIHGLK-----SGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVK 373
RI L S L EF HSS+V F + G + +A D ++
Sbjct: 258 GCITLYETEFGERIGSLSVPTHSSQASLGEF-AHSSWVMSLSFNDSGETLCSAGWDGKLR 316
Query: 374 VWDLKSTDCLQTFK 387
WD+K+ + + T
Sbjct: 317 FWDVKTKERITTLN 330
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 44/93 (47%), Gaps = 9/93 (9%)
Query: 207 TIKFGTKSHAECARFSPDGQFLVSCSFDGFIEVWD--YLSGKLKKDLQYQ--ADETFMMH 262
T G A+ S F VSCS DG+++VWD L + KD Y ++ + H
Sbjct: 8 TANAGKAHDADIFSVSACNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHH 67
Query: 263 DETVLCIEFSRDSE---MLASGSQDGKIKVWRI 292
+ + IE RD+ ++A+ S G + +RI
Sbjct: 68 VDVLQAIE--RDAFELCLVATTSFSGDLLFYRI 98
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 40/91 (43%), Gaps = 10/91 (10%)
Query: 220 RFSPDGQFLV----SCSFDGFIEVWDYLSGKLKKDLQY-----QADETFMMHDETVLCIE 270
+FSP G L S SF G I +++ G+ L QA H V+ +
Sbjct: 240 KFSPQGSLLAIAHDSNSF-GCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLS 298
Query: 271 FSRDSEMLASGSQDGKIKVWRIRSGQCLRRL 301
F+ E L S DGK++ W +++ + + L
Sbjct: 299 FNDSGETLCSAGWDGKLRFWDVKTKERITTL 329
>pdb|3BG0|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
Length = 316
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 30/137 (21%), Positives = 65/137 (47%), Gaps = 9/137 (6%)
Query: 298 LRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGK--LLKEFRGHSSYVNDAI 355
+ ++ +H + + G+++ + S D + +I +++G L+ + RGH V
Sbjct: 5 INTVDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVA 64
Query: 356 FTND--GSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIV 413
+ + G+ + + S D V +W ++ T++ G D+SVNSV P + I+
Sbjct: 65 WAHPMYGNILASCSYDRKVIIWREENG----TWEKSHEHAGHDSSVNSVCWAPHDYGLIL 120
Query: 414 VCNKT-SSIYIMTLQGQ 429
C + +I ++T G+
Sbjct: 121 ACGSSDGAISLLTYTGE 137
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 45/179 (25%), Positives = 70/179 (39%), Gaps = 34/179 (18%)
Query: 225 GQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHDETV--LCIEFSRDSEMLASGS 282
G L SCS+D + +W +G +K ++ HD +V +C +LA GS
Sbjct: 71 GNILASCSYDRKVIIWREENGTWEKSHEHAG------HDSSVNSVCWAPHDYGLILACGS 124
Query: 283 QDGKIKVWRIRS-GQC-LRRLERAHSEGVTSLVFSR---DGSQILSTSFDSTARIHGLKS 337
DG I + GQ ++++ AH+ G ++ ++ GS I S I S
Sbjct: 125 SDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFAS 184
Query: 338 G------KLLKE-----------FRGHSSYVNDAIFTND----GSRVVTASSDCTVKVW 375
G KL KE HS +V D + S + + S D V +W
Sbjct: 185 GGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIW 243
>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|2PM6|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|3IKO|A Chain A, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|D Chain D, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|G Chain G, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3MZK|A Chain A, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZK|D Chain D, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZL|A Chain A, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|C Chain C, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|E Chain E, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|G Chain G, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
Length = 297
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 37/174 (21%), Positives = 70/174 (40%), Gaps = 29/174 (16%)
Query: 225 GQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFS--RDSEMLASGS 282
G L SCS+DG + +W +G+ + +H +V ++++ +L S
Sbjct: 67 GTILASCSYDGKVLIWKEENGR------WSQIAVHAVHSASVNSVQWAPHEYGPLLLVAS 120
Query: 283 QDGKIKVWRIR-SGQCLRRLERAHSEGVTSLVFS-------------RDGSQILSTSFDS 328
DGK+ V + +G + AH+ GV S ++ ++ + ++ D+
Sbjct: 121 SDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADN 180
Query: 329 TARIHGLKSGK----LLKEFRGHSSYVNDAIFTND---GSRVVTASSDCTVKVW 375
+I S L GHS +V D ++ S + + S D T +W
Sbjct: 181 LVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIW 234
>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade
Length = 379
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 37/174 (21%), Positives = 70/174 (40%), Gaps = 29/174 (16%)
Query: 225 GQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFS--RDSEMLASGS 282
G L SCS+DG + +W +G+ + +H +V ++++ +L S
Sbjct: 69 GTILASCSYDGKVLIWKEENGR------WSQIAVHAVHSASVNSVQWAPHEYGPLLLVAS 122
Query: 283 QDGKIKVWRIR-SGQCLRRLERAHSEGVTSLVF-------------SRDGSQILSTSFDS 328
DGK+ V + +G + AH+ GV S + +++ + ++ D+
Sbjct: 123 SDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADN 182
Query: 329 TARIHGLKSGK----LLKEFRGHSSYVNDAIFTND---GSRVVTASSDCTVKVW 375
+I S L GHS +V D ++ S + + S D T +W
Sbjct: 183 LVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIW 236
Score = 28.5 bits (62), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 12/41 (29%), Positives = 25/41 (60%)
Query: 338 GKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLK 378
G ++ H+ ++DA+ G R+ T SSD T+K+++++
Sbjct: 1 GSMVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVE 41
>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice
Length = 753
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 37/174 (21%), Positives = 70/174 (40%), Gaps = 29/174 (16%)
Query: 225 GQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFS--RDSEMLASGS 282
G L SCS+DG + +W +G+ + +H +V ++++ +L S
Sbjct: 67 GTILASCSYDGKVLIWKEENGR------WSQIAVHAVHSASVNSVQWAPHEYGPLLLVAS 120
Query: 283 QDGKIKVWRIR-SGQCLRRLERAHSEGVTSLVF-------------SRDGSQILSTSFDS 328
DGK+ V + +G + AH+ GV S + +++ + ++ D+
Sbjct: 121 SDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADN 180
Query: 329 TARIHGLKSGK----LLKEFRGHSSYVNDAIFTND---GSRVVTASSDCTVKVW 375
+I S L GHS +V D ++ S + + S D T +W
Sbjct: 181 LVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIW 234
Score = 28.9 bits (63), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 11/34 (32%), Positives = 22/34 (64%)
Query: 345 RGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLK 378
H+ ++DA+ G R+ T SSD T+K+++++
Sbjct: 6 NAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVE 39
>pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
pdb|2PM7|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
Length = 297
Score = 33.5 bits (75), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 32/153 (20%), Positives = 61/153 (39%), Gaps = 26/153 (16%)
Query: 225 GQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFS--RDSEMLASGS 282
G L SCS+DG + +W +G+ + +H +V ++++ L S
Sbjct: 67 GTILASCSYDGKVXIWKEENGR------WSQIAVHAVHSASVNSVQWAPHEYGPXLLVAS 120
Query: 283 QDGKIKVWRIR-SGQCLRRLERAHSEGVTSLVFS-------------RDGSQILSTSFDS 328
DGK+ V + +G + AH+ GV S ++ ++ + ++ D+
Sbjct: 121 SDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADN 180
Query: 329 TARIHGLKSGK----LLKEFRGHSSYVNDAIFT 357
+I S L GHS +V D ++
Sbjct: 181 LVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWS 213
>pdb|1POO|A Chain A, Thermostable Phytase From Bacillus Sp
pdb|2POO|A Chain A, Thermostable Phytase In Fully Calcium Loaded State
Length = 355
Score = 33.1 bits (74), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 32/47 (68%), Gaps = 3/47 (6%)
Query: 395 GDASVN-SVHLFPKNPDH--IVVCNKTSSIYIMTLQGQVVKSFSSGK 438
GDA+ + ++ L PKNP + ++ NK S + + +L+G+++ S+ +GK
Sbjct: 23 GDAADDPAIWLDPKNPQNSKLITTNKKSGLAVYSLEGKMLHSYHTGK 69
>pdb|1QLG|A Chain A, Crystal Structure Of Phytase With Magnesium From Bacillus
Amyloliquefaciens
Length = 355
Score = 33.1 bits (74), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 32/47 (68%), Gaps = 3/47 (6%)
Query: 395 GDASVN-SVHLFPKNPDH--IVVCNKTSSIYIMTLQGQVVKSFSSGK 438
GDA+ + ++ L PKNP + ++ NK S + + +L+G+++ S+ +GK
Sbjct: 23 GDAADDPAIWLDPKNPQNSKLITTNKKSGLAVYSLEGKMLHSYHTGK 69
>pdb|1CVM|A Chain A, Cadmium Inhibited Crystal Structure Of Phytase From
Bacillus Amyloliquefaciens
pdb|1H6L|A Chain A, Beta-Propeller Phytase In Complex With Phosphate And
Calcium Ions
Length = 353
Score = 33.1 bits (74), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 32/47 (68%), Gaps = 3/47 (6%)
Query: 395 GDASVN-SVHLFPKNPDH--IVVCNKTSSIYIMTLQGQVVKSFSSGK 438
GDA+ + ++ L PKNP + ++ NK S + + +L+G+++ S+ +GK
Sbjct: 23 GDAADDPAIWLDPKNPQNSKLITTNKKSGLAVYSLEGKMLHSYHTGK 69
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 32.3 bits (72), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 35/166 (21%), Positives = 71/166 (42%), Gaps = 24/166 (14%)
Query: 230 SCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSE-MLASGSQDGKIK 288
S + D + +WD S K + H V C+ F+ SE +LA+GS D +
Sbjct: 245 SVADDQKLMIWDTRSNNTSK-----PSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVA 299
Query: 289 VWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKE----- 343
+W +R+ + +H + + + +S IL++S + R++ K+ +E
Sbjct: 300 LWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASS-GTDRRLNVWDLSKIGEEQSPED 358
Query: 344 -----------FRGHSSYVNDAIFT-NDGSRVVTASSDCTVKVWDL 377
GH++ ++D + N+ + + S D ++VW +
Sbjct: 359 AEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQVWQM 404
>pdb|3G06|A Chain A, The Salmonella Virulence Effector Ssph2 Functions As A
Novel E3 Ligase
Length = 622
Score = 32.3 bits (72), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 1/77 (1%)
Query: 237 IEVWDYLSGKLKKDLQYQADETFM-MHDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSG 295
IEVW KLKK L + + M D + + + +D+E+ ++ + + W ++ G
Sbjct: 481 IEVWLAYQNKLKKSLGLTSVTSEMRFFDVSGVTVTDLQDAELQVKAAEKSEFREWILQWG 540
Query: 296 QCLRRLERAHSEGVTSL 312
R LER E V +L
Sbjct: 541 PLHRVLERKAPERVNAL 557
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 32.0 bits (71), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 43/97 (44%), Gaps = 6/97 (6%)
Query: 230 SCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSE-MLASGSQDGKIK 288
S + D + +WD S K H V C+ F+ SE +LA+GS D +
Sbjct: 247 SVADDQKLXIWDTRSNTTSK-----PSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVA 301
Query: 289 VWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTS 325
+W +R+ + +H + + + +S IL++S
Sbjct: 302 LWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASS 338
>pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 416
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 58/297 (19%), Positives = 119/297 (40%), Gaps = 37/297 (12%)
Query: 245 GKLKKDLQYQADETFMM-HDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQC------ 297
G + K ++ TF HD+ L + + + A+ S D +++W + +
Sbjct: 4 GSMVKLAEFSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIAS 63
Query: 298 ------LRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYV 351
L+ +H+ + + +GS L ++ ++ I+ + F HSS V
Sbjct: 64 LQVDSKFNDLDWSHNNKIIAGALD-NGSLELYSTNEANNAINSMA------RFSNHSSSV 116
Query: 352 NDAIFTNDGSRVV-TASSDCTVKVWDL-KSTDCLQTFKPPPPLRGGDASVNSVHLFPKNP 409
F V+ + ++ + +WD+ K T+ + P P + +SV+ V N
Sbjct: 117 KTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSM-SSVDEVISLAWNQ 175
Query: 410 D--HIVVCNKTS---SIYIMTLQGQVV----KSFSSGKREGGDFVAACVSPKGEWIYCVG 460
H+ +S SI+ + + +V+ S +SG ++ V G
Sbjct: 176 SLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATG 235
Query: 461 EDRN----LYCFSHQSGKLEHLMKVHEKDVIGVTH-HPHRNLLATYGEDCTMKLWKP 512
D + ++ + + L+ L + H+K ++ + H +LL + G D T+ LW P
Sbjct: 236 SDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNP 292
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Query: 262 HDETVLCIEFSRDSE-MLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQ 320
H V C+ F+ SE +LA+GS D + +W +R+ + +H + + + +S
Sbjct: 274 HTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNET 333
Query: 321 ILSTS 325
IL++S
Sbjct: 334 ILASS 338
>pdb|1K8K|C Chain C, Crystal Structure Of Arp23 COMPLEX
pdb|1TYQ|C Chain C, Crystal Structure Of Arp23 COMPLEX WITH BOUND ATP AND
Calcium
pdb|1U2V|C Chain C, Crystal Structure Of Arp23 COMPLEX WITH BOUND ADP AND
Calcium
pdb|2P9I|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp And Crosslinked With Gluteraldehyde
pdb|2P9K|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Atp And Crosslinked With Glutaraldehyde
pdb|2P9L|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX
pdb|2P9N|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9P|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9S|C Chain C, Structure Of Bovine Arp23 COMPLEX CO-Crystallized With
AtpMG2+
pdb|2P9U|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Amp-Pnp And Calcium
Length = 372
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 39/84 (46%), Gaps = 6/84 (7%)
Query: 307 EGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLK--EFRGHSSYVNDAIFTNDGSRVV 364
E ++ +++D +QI + I+ K ++ E + H+ V + D +R+V
Sbjct: 9 EPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIV 68
Query: 365 TASSDCTVKVWDLKSTDCLQTFKP 388
T +D VW LK +T+KP
Sbjct: 69 TCGTDRNAYVWTLKG----RTWKP 88
Score = 28.9 bits (63), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 34/178 (19%), Positives = 64/178 (35%), Gaps = 37/178 (20%)
Query: 221 FSPDGQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLAS 280
++PD +V+C D VW K ++ + + C+ ++ + + A
Sbjct: 60 WAPDSNRIVTCGTDRNAYVWTL------KGRTWKPTLVILRINRAARCVRWAPNEKKFAV 113
Query: 281 GSQDGKIKV--------WRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARI 332
GS I + W + + +++ V SL + + + + S D RI
Sbjct: 114 GSGSRVISICYFEQENDWWV-----CKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRI 168
Query: 333 HG------------------LKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTV 372
+ G+L+ E +V+ F+ +GSRV S D TV
Sbjct: 169 FSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTV 226
>pdb|3DXK|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0944636
pdb|3DXM|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0993548
pdb|3RSE|C Chain C, Structural And Biochemical Characterization Of Two Binding
Sites For Nucleation Promoting Factor Wasp-Vca On Arp23
COMPLEX
pdb|3UKR|C Chain C, Crystal Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-666
pdb|3UKU|C Chain C, Structure Of Arp2/3 Complex With Bound Inhibitor Ck-869
pdb|3ULE|C Chain C, Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-869 And Atp
Length = 372
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 39/84 (46%), Gaps = 6/84 (7%)
Query: 307 EGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLK--EFRGHSSYVNDAIFTNDGSRVV 364
E ++ +++D +QI + I+ K ++ E + H+ V + D +R+V
Sbjct: 9 EPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGIDWAPDSNRIV 68
Query: 365 TASSDCTVKVWDLKSTDCLQTFKP 388
T +D VW LK +T+KP
Sbjct: 69 TCGTDRNAYVWTLKG----RTWKP 88
Score = 28.9 bits (63), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 34/178 (19%), Positives = 64/178 (35%), Gaps = 37/178 (20%)
Query: 221 FSPDGQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLAS 280
++PD +V+C D VW K ++ + + C+ ++ + + A
Sbjct: 60 WAPDSNRIVTCGTDRNAYVWTL------KGRTWKPTLVILRINRAARCVRWAPNEKKFAV 113
Query: 281 GSQDGKIKV--------WRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARI 332
GS I + W + + +++ V SL + + + + S D RI
Sbjct: 114 GSGSRVISICYFEQENDWWV-----CKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRI 168
Query: 333 HG------------------LKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTV 372
+ G+L+ E +V+ F+ +GSRV S D TV
Sbjct: 169 FSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTV 226
>pdb|3I2N|A Chain A, Crystal Structure Of Wd40 Repeats Protein Wdr92
Length = 357
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 47/107 (43%), Gaps = 10/107 (9%)
Query: 285 GKIKVWRIRSG--QCLRRLERAHSEGVTSLVFSRDGSQILSTS-FDSTARIHGLKSGKL- 340
G I+++ I+ G + LR +E+A + + + L+T F I L++ ++
Sbjct: 44 GVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMP 103
Query: 341 LKEFRGHSSYVN------DAIFTNDGSRVVTASSDCTVKVWDLKSTD 381
+ +GH +N +VT S D TVKVWD + D
Sbjct: 104 VYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKD 150
>pdb|1HNO|A Chain A, Crystal Structure Of Peroxisomal Delta3-delta2-enoyl-coa
Isomerase From Saccharomyces Cerevisiae
pdb|1HNU|A Chain A, Crystal Structure Of Peroxisomal Delta3-Delta2-Enoyl-Coa
Isomerase From Saccharomyces Cerevisiae
pdb|1K39|A Chain A, The Structure Of Yeast Delta3-delta2-enoyl-coa Isomerase
Complexed With Octanoyl-coa
pdb|1K39|B Chain B, The Structure Of Yeast Delta3-delta2-enoyl-coa Isomerase
Complexed With Octanoyl-coa
pdb|1K39|C Chain C, The Structure Of Yeast Delta3-delta2-enoyl-coa Isomerase
Complexed With Octanoyl-coa
pdb|1PJH|A Chain A, Structural Studies On Delta3-Delta2-Enoyl-Coa Isomerase:
The Variable Mode Of Assembly Of The Trimeric Disks Of
The Crotonase Superfamily
pdb|1PJH|B Chain B, Structural Studies On Delta3-Delta2-Enoyl-Coa Isomerase:
The Variable Mode Of Assembly Of The Trimeric Disks Of
The Crotonase Superfamily
pdb|1PJH|C Chain C, Structural Studies On Delta3-Delta2-Enoyl-Coa Isomerase:
The Variable Mode Of Assembly Of The Trimeric Disks Of
The Crotonase Superfamily
Length = 280
Score = 29.3 bits (64), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 202 TTLSHTIKFGTKSHAECARFSPDGQFLVSCSFDGFI 237
TT+S +KFGT + EC F+ ++ + C +GFI
Sbjct: 161 TTVSLPLKFGTNTTYECLMFNKPFKYDIMCE-NGFI 195
>pdb|1VL2|A Chain A, Crystal Structure Of Argininosuccinate Synthase (Tm1780)
From Thermotoga Maritima At 1.65 A Resolution
pdb|1VL2|B Chain B, Crystal Structure Of Argininosuccinate Synthase (Tm1780)
From Thermotoga Maritima At 1.65 A Resolution
pdb|1VL2|C Chain C, Crystal Structure Of Argininosuccinate Synthase (Tm1780)
From Thermotoga Maritima At 1.65 A Resolution
pdb|1VL2|D Chain D, Crystal Structure Of Argininosuccinate Synthase (Tm1780)
From Thermotoga Maritima At 1.65 A Resolution
Length = 421
Score = 28.9 bits (63), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 461 EDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHP 493
ED NL SH++GKLE + ++DV T P
Sbjct: 191 EDENLMHISHEAGKLEDPAHIPDEDVFTWTVSP 223
>pdb|3VUO|A Chain A, Crystal Structure Of Nontoxic Nonhemagglutinin
Subcomponent (Ntnha) From Clostridium Botulinum Serotype
D Strain 4947
Length = 1196
Score = 28.9 bits (63), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 25/43 (58%), Gaps = 7/43 (16%)
Query: 15 LQFCKENSLQQTFQTLQNECQVSLNTVD------SIETFVADI 51
L+ KE + ++TF L NE Q+S+N VD SI FV DI
Sbjct: 719 LKLIKE-TTEKTFIDLSNESQISMNRVDNFLNKASICVFVEDI 760
>pdb|1M9S|A Chain A, Crystal Structure Of Internalin B (Inlb), A Listeria
Monocytogenes Virulence Protein Containing Sh3-Like
Domains
Length = 605
Score = 28.5 bits (62), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 23/43 (53%)
Query: 34 CQVSLNTVDSIETFVADINSGRWDAILPQVAQLKLPRNKLEDL 76
Q LN++D I +DI S + LP V +L L NKL D+
Sbjct: 38 TQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDI 80
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.134 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,061,473
Number of Sequences: 62578
Number of extensions: 615731
Number of successful extensions: 2460
Number of sequences better than 100.0: 127
Number of HSP's better than 100.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 30
Number of HSP's that attempted gapping in prelim test: 1253
Number of HSP's gapped (non-prelim): 507
length of query: 512
length of database: 14,973,337
effective HSP length: 103
effective length of query: 409
effective length of database: 8,527,803
effective search space: 3487871427
effective search space used: 3487871427
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)