Query 010362
Match_columns 512
No_of_seqs 964 out of 2754
Neff 11.2
Searched_HMMs 46136
Date Thu Mar 28 23:38:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010362.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010362hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0275 Conserved WD40 repeat- 100.0 2E-100 4E-105 640.1 35.0 508 1-512 1-508 (508)
2 KOG0293 WD40 repeat-containing 100.0 4.6E-71 1E-75 477.1 34.9 486 4-512 14-512 (519)
3 KOG0271 Notchless-like WD40 re 100.0 2.4E-51 5.2E-56 351.8 26.6 290 204-512 107-438 (480)
4 KOG0273 Beta-transducin family 100.0 1.2E-50 2.5E-55 356.7 27.3 279 212-511 234-521 (524)
5 KOG0272 U4/U6 small nuclear ri 100.0 6.2E-50 1.3E-54 347.6 28.2 286 209-512 171-459 (459)
6 KOG0271 Notchless-like WD40 re 100.0 6.2E-50 1.3E-54 343.1 27.2 311 182-511 127-479 (480)
7 KOG0286 G-protein beta subunit 100.0 2.5E-46 5.5E-51 310.2 32.8 289 206-511 49-343 (343)
8 KOG0295 WD40 repeat-containing 100.0 1.8E-42 3.8E-47 295.7 26.9 283 211-511 106-404 (406)
9 KOG0282 mRNA splicing factor [ 100.0 5.9E-43 1.3E-47 309.4 19.1 299 196-511 198-503 (503)
10 KOG0263 Transcription initiati 100.0 1.5E-40 3.2E-45 311.7 34.5 260 200-512 366-648 (707)
11 KOG0279 G protein beta subunit 100.0 3.7E-40 8E-45 272.0 32.2 285 210-511 12-311 (315)
12 KOG0315 G-protein beta subunit 100.0 1.4E-40 3.1E-45 269.9 29.0 270 226-512 11-287 (311)
13 KOG0272 U4/U6 small nuclear ri 100.0 3.2E-42 7E-47 299.6 20.7 267 184-469 189-458 (459)
14 KOG0265 U5 snRNP-specific prot 100.0 8.7E-41 1.9E-45 278.5 27.7 284 210-509 44-334 (338)
15 KOG0318 WD40 repeat stress pro 100.0 6.1E-40 1.3E-44 293.0 34.1 329 174-511 152-558 (603)
16 KOG0284 Polyadenylation factor 100.0 1.6E-41 3.5E-46 293.9 21.5 295 198-511 81-378 (464)
17 KOG0315 G-protein beta subunit 100.0 4.1E-39 8.8E-44 261.4 29.9 295 186-492 14-309 (311)
18 KOG0296 Angio-associated migra 100.0 9E-39 1.9E-43 273.3 30.2 288 211-511 62-396 (399)
19 KOG0645 WD40 repeat protein [G 100.0 5.9E-38 1.3E-42 257.9 32.7 282 206-511 8-309 (312)
20 KOG0266 WD40 repeat-containing 100.0 3.2E-38 6.8E-43 304.8 34.9 296 205-512 151-453 (456)
21 KOG0285 Pleiotropic regulator 100.0 7.3E-39 1.6E-43 272.9 25.9 289 201-511 140-437 (460)
22 KOG0279 G protein beta subunit 100.0 5.3E-38 1.2E-42 259.3 28.0 255 199-471 50-313 (315)
23 cd00200 WD40 WD40 domain, foun 100.0 6.8E-37 1.5E-41 282.4 37.1 285 207-511 4-289 (289)
24 KOG0273 Beta-transducin family 100.0 4.4E-38 9.5E-43 277.5 27.4 296 201-511 168-480 (524)
25 KOG0291 WD40-repeat-containing 100.0 5.6E-37 1.2E-41 285.2 33.4 307 183-506 321-703 (893)
26 KOG0286 G-protein beta subunit 100.0 1.8E-36 3.8E-41 251.8 29.4 275 182-469 67-343 (343)
27 KOG0316 Conserved WD40 repeat- 100.0 9.6E-37 2.1E-41 245.6 25.7 287 201-510 6-296 (307)
28 KOG0640 mRNA cleavage stimulat 100.0 3.7E-36 8.1E-41 251.8 29.5 355 152-511 43-424 (430)
29 PLN00181 protein SPA1-RELATED; 100.0 4.1E-35 8.8E-40 304.7 39.3 287 211-511 481-791 (793)
30 KOG0284 Polyadenylation factor 100.0 9.8E-38 2.1E-42 270.5 16.2 271 183-471 109-380 (464)
31 KOG0278 Serine/threonine kinas 100.0 2.7E-37 5.9E-42 250.9 16.9 279 210-511 11-295 (334)
32 KOG0291 WD40-repeat-containing 100.0 5.9E-35 1.3E-39 271.8 33.4 281 213-512 265-549 (893)
33 KOG0319 WD40-repeat-containing 100.0 5.2E-36 1.1E-40 278.4 25.7 316 185-511 77-533 (775)
34 KOG0643 Translation initiation 100.0 1.2E-34 2.6E-39 237.9 28.1 281 210-510 7-314 (327)
35 KOG0292 Vesicle coat complex C 100.0 2.9E-35 6.3E-40 278.2 27.2 289 211-510 7-318 (1202)
36 KOG0263 Transcription initiati 100.0 2E-35 4.3E-40 277.3 24.6 202 210-427 448-649 (707)
37 KOG0276 Vesicle coat complex C 100.0 5.9E-35 1.3E-39 266.3 26.7 282 211-509 11-295 (794)
38 KOG1446 Histone H3 (Lys4) meth 100.0 8.3E-33 1.8E-37 233.3 33.6 284 212-512 13-302 (311)
39 KOG0318 WD40 repeat stress pro 100.0 6E-33 1.3E-37 248.4 34.6 290 209-511 55-348 (603)
40 KOG0283 WD40 repeat-containing 100.0 1.9E-34 4E-39 273.2 25.9 265 202-471 256-576 (712)
41 KOG0313 Microtubule binding pr 100.0 5.6E-34 1.2E-38 245.2 26.2 291 196-511 90-416 (423)
42 KOG0285 Pleiotropic regulator 100.0 1.3E-34 2.9E-39 247.0 21.7 245 254-511 142-387 (460)
43 KOG0288 WD40 repeat protein Ti 100.0 5.2E-35 1.1E-39 254.1 17.6 297 196-511 159-459 (459)
44 KOG0319 WD40-repeat-containing 100.0 7.8E-34 1.7E-38 264.0 26.4 291 200-511 311-617 (775)
45 KOG1407 WD40 repeat protein [F 100.0 6E-33 1.3E-37 227.2 28.3 281 211-510 18-308 (313)
46 KOG0316 Conserved WD40 repeat- 100.0 8.2E-34 1.8E-38 228.8 22.4 244 257-512 11-256 (307)
47 KOG0645 WD40 repeat protein [G 100.0 4.7E-33 1E-37 229.1 27.2 259 193-471 38-311 (312)
48 KOG0281 Beta-TrCP (transducin 100.0 4.3E-35 9.3E-40 249.1 15.0 268 211-511 195-475 (499)
49 KOG0295 WD40 repeat-containing 100.0 5.9E-34 1.3E-38 243.7 22.1 383 5-470 8-405 (406)
50 KOG0306 WD40-repeat-containing 100.0 1.3E-32 2.9E-37 256.1 30.1 321 172-511 67-578 (888)
51 KOG0265 U5 snRNP-specific prot 100.0 7.6E-33 1.6E-37 231.2 24.6 248 254-512 38-295 (338)
52 KOG0277 Peroxisomal targeting 100.0 3.3E-33 7.2E-38 227.8 21.4 282 217-512 12-308 (311)
53 KOG0306 WD40-repeat-containing 100.0 1.1E-32 2.4E-37 256.6 27.8 280 210-511 370-662 (888)
54 KOG0266 WD40 repeat-containing 100.0 2.8E-32 6.1E-37 263.5 30.0 242 262-512 158-408 (456)
55 KOG0276 Vesicle coat complex C 100.0 1.5E-32 3.2E-37 250.7 23.9 245 258-512 8-256 (794)
56 KOG0305 Anaphase promoting com 100.0 1E-31 2.2E-36 248.3 28.1 273 218-512 182-460 (484)
57 KOG0772 Uncharacterized conser 100.0 5.3E-32 1.2E-36 241.7 24.8 302 199-510 154-484 (641)
58 PTZ00421 coronin; Provisional 100.0 1.1E-30 2.4E-35 251.0 33.9 273 214-495 21-315 (493)
59 KOG0289 mRNA splicing factor [ 100.0 1.3E-29 2.8E-34 222.0 35.6 283 211-511 217-504 (506)
60 KOG0973 Histone transcription 100.0 4.8E-31 1E-35 256.5 29.4 297 211-511 11-353 (942)
61 KOG0282 mRNA splicing factor [ 100.0 9.8E-33 2.1E-37 244.8 16.2 248 253-511 204-460 (503)
62 KOG0268 Sof1-like rRNA process 100.0 1.9E-32 4.1E-37 234.3 16.5 277 210-512 63-344 (433)
63 PLN00181 protein SPA1-RELATED; 100.0 1.2E-30 2.7E-35 271.3 33.6 263 234-512 457-737 (793)
64 cd00200 WD40 WD40 domain, foun 100.0 3.5E-30 7.5E-35 237.5 32.3 244 258-512 4-248 (289)
65 KOG0281 Beta-TrCP (transducin 100.0 1.7E-32 3.7E-37 233.3 14.7 265 184-476 209-482 (499)
66 KOG0292 Vesicle coat complex C 100.0 1.1E-31 2.4E-36 254.1 21.0 243 262-512 8-279 (1202)
67 KOG1446 Histone H3 (Lys4) meth 100.0 7.6E-30 1.7E-34 215.4 29.7 247 256-512 7-261 (311)
68 KOG0647 mRNA export protein (c 100.0 4.3E-30 9.2E-35 214.9 27.4 274 210-501 24-311 (347)
69 KOG0296 Angio-associated migra 100.0 3.8E-30 8.3E-35 220.6 27.4 266 184-471 78-398 (399)
70 KOG0641 WD40 repeat protein [G 100.0 1.5E-28 3.2E-33 197.4 33.7 295 211-511 30-347 (350)
71 KOG0274 Cdc4 and related F-box 100.0 5.6E-30 1.2E-34 246.2 29.9 277 207-512 202-481 (537)
72 KOG1036 Mitotic spindle checkp 100.0 1.4E-29 3E-34 212.7 27.9 274 210-503 10-294 (323)
73 KOG0299 U3 snoRNP-associated p 100.0 8.9E-30 1.9E-34 224.8 27.2 290 210-510 139-453 (479)
74 KOG0310 Conserved WD40 repeat- 100.0 6E-30 1.3E-34 227.6 26.1 275 213-509 26-305 (487)
75 KOG0277 Peroxisomal targeting 100.0 1.6E-30 3.6E-35 212.2 20.5 252 204-470 51-308 (311)
76 KOG0283 WD40 repeat-containing 100.0 1.6E-30 3.5E-35 246.6 23.7 240 261-511 265-574 (712)
77 KOG0294 WD40 repeat-containing 100.0 9.6E-30 2.1E-34 214.1 25.6 270 227-512 3-280 (362)
78 KOG1273 WD40 repeat protein [G 100.0 6.5E-30 1.4E-34 215.0 24.1 292 199-511 12-320 (405)
79 KOG0278 Serine/threonine kinas 100.0 6.8E-31 1.5E-35 213.8 17.5 264 190-476 37-302 (334)
80 KOG1408 WD40 repeat protein [F 100.0 6E-30 1.3E-34 237.1 25.4 324 185-512 342-712 (1080)
81 KOG0647 mRNA export protein (c 100.0 1.3E-29 2.8E-34 212.1 23.0 240 262-512 26-280 (347)
82 PTZ00421 coronin; Provisional 100.0 2.3E-28 5E-33 235.0 33.4 235 210-452 72-314 (493)
83 KOG4283 Transcription-coupled 100.0 6.1E-29 1.3E-33 207.3 25.2 298 210-512 40-364 (397)
84 PTZ00420 coronin; Provisional 100.0 2.7E-28 5.8E-33 235.4 33.0 252 193-454 55-319 (568)
85 PTZ00420 coronin; Provisional 100.0 4.5E-28 9.8E-33 233.8 34.0 247 231-495 50-318 (568)
86 KOG1407 WD40 repeat protein [F 100.0 2.7E-29 5.9E-34 205.9 21.6 242 257-509 14-257 (313)
87 KOG0301 Phospholipase A2-activ 100.0 7.2E-29 1.6E-33 229.5 26.9 279 204-511 6-286 (745)
88 KOG0305 Anaphase promoting com 100.0 6E-29 1.3E-33 230.0 26.5 259 196-473 201-463 (484)
89 KOG0264 Nucleosome remodeling 100.0 2.3E-29 5E-34 222.2 22.4 275 203-512 114-403 (422)
90 KOG0274 Cdc4 and related F-box 100.0 9.8E-29 2.1E-33 237.7 28.5 269 187-482 223-493 (537)
91 KOG0300 WD40 repeat-containing 100.0 2.4E-29 5.3E-34 211.8 21.1 282 210-511 145-474 (481)
92 KOG1274 WD40 repeat protein [G 100.0 3.8E-28 8.1E-33 231.8 31.3 287 208-510 8-297 (933)
93 KOG0643 Translation initiation 100.0 1.1E-28 2.5E-33 202.9 23.7 264 190-472 30-318 (327)
94 KOG2096 WD40 repeat protein [G 100.0 5.8E-28 1.2E-32 203.6 27.2 292 211-510 84-399 (420)
95 KOG0293 WD40 repeat-containing 100.0 7.1E-29 1.5E-33 216.0 22.2 267 189-472 243-514 (519)
96 KOG0973 Histone transcription 100.0 1.3E-28 2.9E-33 239.6 24.6 255 211-473 67-357 (942)
97 KOG0289 mRNA splicing factor [ 100.0 3.4E-28 7.4E-33 213.1 24.6 260 196-470 245-505 (506)
98 KOG0639 Transducin-like enhanc 100.0 9.1E-29 2E-33 220.5 20.6 286 210-511 416-702 (705)
99 KOG0313 Microtubule binding pr 100.0 3.6E-28 7.8E-33 209.5 22.6 271 184-470 117-417 (423)
100 KOG1539 WD repeat protein [Gen 100.0 6.5E-27 1.4E-31 221.0 32.8 327 175-512 164-605 (910)
101 KOG0288 WD40 repeat protein Ti 100.0 1.3E-28 2.9E-33 214.4 19.4 267 185-468 190-458 (459)
102 KOG1332 Vesicle coat complex C 100.0 1.6E-28 3.5E-33 199.4 18.0 258 205-471 3-286 (299)
103 KOG0275 Conserved WD40 repeat- 100.0 5.7E-29 1.2E-33 210.1 15.9 277 176-469 220-507 (508)
104 KOG0310 Conserved WD40 repeat- 100.0 1.9E-27 4.2E-32 211.7 25.7 240 211-471 66-309 (487)
105 KOG2055 WD40 repeat protein [G 100.0 5.8E-27 1.3E-31 207.1 27.3 288 212-512 212-511 (514)
106 KOG0321 WD40 repeat-containing 100.0 1.3E-27 2.8E-32 219.2 23.2 290 219-512 55-390 (720)
107 KOG0294 WD40 repeat-containing 100.0 6.1E-27 1.3E-31 197.3 25.0 256 211-492 41-306 (362)
108 KOG0641 WD40 repeat protein [G 100.0 3.1E-26 6.7E-31 184.1 25.9 260 200-471 76-349 (350)
109 KOG1036 Mitotic spindle checkp 100.0 1.5E-26 3.2E-31 194.6 24.0 237 262-512 12-261 (323)
110 KOG0650 WD40 repeat nucleolar 100.0 6.8E-27 1.5E-31 212.9 23.7 289 199-510 387-732 (733)
111 KOG2106 Uncharacterized conser 100.0 5.6E-25 1.2E-29 196.6 34.4 305 185-512 173-520 (626)
112 KOG0308 Conserved WD40 repeat- 100.0 1.8E-27 3.9E-32 218.8 18.9 281 218-511 29-325 (735)
113 KOG0299 U3 snoRNP-associated p 100.0 1E-26 2.3E-31 205.5 22.5 242 259-511 138-408 (479)
114 KOG0646 WD40 repeat protein [G 100.0 1E-26 2.3E-31 205.9 22.1 252 226-494 51-330 (476)
115 TIGR03866 PQQ_ABC_repeats PQQ- 100.0 4.9E-25 1.1E-29 205.0 34.3 268 225-512 1-278 (300)
116 KOG0772 Uncharacterized conser 100.0 6.6E-27 1.4E-31 209.4 20.5 261 251-512 155-444 (641)
117 KOG4328 WD40 protein [Function 100.0 2.7E-26 5.8E-31 202.7 23.6 297 206-510 180-492 (498)
118 KOG2445 Nuclear pore complex c 100.0 1.4E-25 3.1E-30 188.4 26.6 251 260-512 10-317 (361)
119 KOG0640 mRNA cleavage stimulat 100.0 1.1E-26 2.4E-31 195.1 18.6 254 210-471 169-426 (430)
120 KOG0308 Conserved WD40 repeat- 99.9 1.1E-26 2.4E-31 213.7 19.9 311 184-511 39-391 (735)
121 KOG0300 WD40 repeat-containing 99.9 2.6E-26 5.5E-31 193.6 19.5 271 191-473 169-478 (481)
122 KOG0646 WD40 repeat protein [G 99.9 7.6E-26 1.7E-30 200.5 22.9 269 231-512 13-306 (476)
123 KOG2048 WD40 repeat protein [G 99.9 8.1E-25 1.7E-29 202.5 30.5 282 212-509 24-315 (691)
124 KOG0268 Sof1-like rRNA process 99.9 4.4E-27 9.5E-32 201.7 13.8 239 257-512 60-301 (433)
125 KOG1539 WD repeat protein [Gen 99.9 8.4E-26 1.8E-30 213.5 23.5 320 176-510 251-645 (910)
126 KOG1332 Vesicle coat complex C 99.9 3.5E-26 7.6E-31 185.9 17.7 248 261-512 9-285 (299)
127 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 6.7E-24 1.5E-28 197.4 35.3 283 193-493 12-300 (300)
128 KOG1063 RNA polymerase II elon 99.9 8.3E-25 1.8E-29 202.8 28.1 303 205-511 184-646 (764)
129 KOG0269 WD40 repeat-containing 99.9 9.5E-27 2.1E-31 218.2 14.7 246 216-473 90-342 (839)
130 KOG0269 WD40 repeat-containing 99.9 4.5E-26 9.8E-31 213.7 18.5 286 213-508 39-335 (839)
131 KOG1408 WD40 repeat protein [F 99.9 7E-25 1.5E-29 203.8 26.0 285 217-511 328-669 (1080)
132 KOG2106 Uncharacterized conser 99.9 7.3E-24 1.6E-28 189.5 31.4 299 193-511 135-475 (626)
133 KOG2445 Nuclear pore complex c 99.9 3.2E-24 7E-29 180.3 25.1 258 206-471 6-318 (361)
134 KOG2048 WD40 repeat protein [G 99.9 4.2E-23 9.2E-28 191.2 32.2 318 184-511 82-546 (691)
135 KOG1034 Transcriptional repres 99.9 2.9E-24 6.4E-29 182.2 21.9 304 200-511 25-381 (385)
136 KOG0264 Nucleosome remodeling 99.9 9.4E-25 2E-29 193.2 19.5 221 206-429 171-406 (422)
137 KOG0302 Ribosome Assembly prot 99.9 3.2E-24 7E-29 185.1 22.3 358 110-512 56-437 (440)
138 KOG1538 Uncharacterized conser 99.9 5.1E-24 1.1E-28 196.7 23.1 274 215-511 14-291 (1081)
139 KOG2919 Guanine nucleotide-bin 99.9 8.7E-24 1.9E-28 178.9 22.6 282 216-504 52-361 (406)
140 KOG0267 Microtubule severing p 99.9 7E-26 1.5E-30 210.8 10.8 234 211-504 26-259 (825)
141 KOG0301 Phospholipase A2-activ 99.9 8.3E-24 1.8E-28 196.3 24.3 256 187-471 30-288 (745)
142 KOG0270 WD40 repeat-containing 99.9 3.5E-24 7.5E-29 188.8 18.7 252 217-476 177-454 (463)
143 KOG1274 WD40 repeat protein [G 99.9 4.4E-23 9.6E-28 197.5 25.9 242 261-512 11-261 (933)
144 KOG2055 WD40 repeat protein [G 99.9 8.4E-23 1.8E-27 181.0 24.0 285 177-471 221-512 (514)
145 KOG1445 Tumor-specific antigen 99.9 7E-24 1.5E-28 194.7 17.8 138 208-348 74-213 (1012)
146 KOG4227 WD40 repeat protein [G 99.9 7.2E-23 1.6E-27 177.7 22.7 298 211-512 54-386 (609)
147 KOG0639 Transducin-like enhanc 99.9 1.2E-23 2.7E-28 187.9 17.5 239 212-470 464-703 (705)
148 KOG0267 Microtubule severing p 99.9 4.1E-25 8.9E-30 205.7 8.4 223 224-512 3-225 (825)
149 KOG4378 Nuclear protein COP1 [ 99.9 4.8E-23 1E-27 183.9 20.2 265 215-495 36-305 (673)
150 KOG1063 RNA polymerase II elon 99.9 3.9E-22 8.5E-27 185.2 26.9 292 210-511 264-697 (764)
151 KOG1009 Chromatin assembly com 99.9 4.9E-22 1.1E-26 173.5 22.8 297 209-509 9-368 (434)
152 KOG1188 WD40 repeat protein [G 99.9 1.3E-22 2.9E-27 173.2 18.3 274 226-511 41-344 (376)
153 KOG1334 WD40 repeat protein [G 99.9 6.4E-23 1.4E-27 182.9 15.8 294 211-512 140-465 (559)
154 KOG0307 Vesicle coat complex C 99.9 3.4E-23 7.4E-28 203.2 14.7 284 217-511 10-325 (1049)
155 KOG0302 Ribosome Assembly prot 99.9 2.5E-22 5.4E-27 173.5 17.7 206 304-512 149-377 (440)
156 KOG2919 Guanine nucleotide-bin 99.9 9.9E-22 2.2E-26 166.6 20.7 244 266-512 52-326 (406)
157 KOG4378 Nuclear protein COP1 [ 99.9 4.2E-22 9.1E-27 178.0 18.9 264 234-511 11-278 (673)
158 KOG0322 G-protein beta subunit 99.9 4.3E-22 9.3E-27 164.1 17.5 297 201-512 3-322 (323)
159 KOG0650 WD40 repeat nucleolar 99.9 9.9E-22 2.1E-26 179.6 21.3 252 245-510 382-677 (733)
160 KOG4283 Transcription-coupled 99.9 1.8E-21 3.8E-26 163.0 21.0 246 210-470 98-364 (397)
161 KOG4328 WD40 protein [Function 99.9 1.1E-21 2.5E-26 173.7 19.8 247 259-512 182-449 (498)
162 KOG0642 Cell-cycle nuclear pro 99.9 1.7E-22 3.7E-27 183.6 13.7 259 207-511 289-559 (577)
163 KOG1007 WD repeat protein TSSC 99.9 4E-21 8.7E-26 160.4 20.4 279 209-509 59-357 (370)
164 KOG0270 WD40 repeat-containing 99.9 1.7E-21 3.7E-26 172.0 16.8 204 211-427 241-449 (463)
165 KOG1273 WD40 repeat protein [G 99.9 6E-21 1.3E-25 161.3 19.3 196 309-511 26-224 (405)
166 KOG0303 Actin-binding protein 99.9 6.1E-21 1.3E-25 166.0 19.6 214 210-430 78-297 (472)
167 KOG1034 Transcriptional repres 99.9 5.2E-21 1.1E-25 162.6 17.1 250 211-471 87-383 (385)
168 COG2319 FOG: WD40 repeat [Gene 99.9 1.3E-18 2.9E-23 170.4 37.2 283 209-511 61-357 (466)
169 KOG1587 Cytoplasmic dynein int 99.9 3.8E-20 8.3E-25 177.0 24.7 269 193-472 223-517 (555)
170 KOG1963 WD40 repeat protein [G 99.9 3.3E-19 7.2E-24 170.8 30.2 299 205-512 197-537 (792)
171 KOG0649 WD40 repeat protein [G 99.9 4.1E-19 8.9E-24 144.9 26.2 282 216-510 13-313 (325)
172 COG2319 FOG: WD40 repeat [Gene 99.9 6.2E-18 1.3E-22 165.7 39.3 301 192-512 134-441 (466)
173 KOG0307 Vesicle coat complex C 99.9 5.7E-21 1.2E-25 187.7 17.1 254 211-474 62-330 (1049)
174 PRK11028 6-phosphogluconolacto 99.9 1.2E-18 2.7E-23 163.4 32.0 272 229-511 6-302 (330)
175 KOG2096 WD40 repeat protein [G 99.9 2.9E-19 6.3E-24 151.4 24.1 248 215-469 134-400 (420)
176 KOG1538 Uncharacterized conser 99.9 4E-20 8.6E-25 171.2 20.2 266 177-472 21-294 (1081)
177 KOG0303 Actin-binding protein 99.9 8.9E-20 1.9E-24 158.8 20.9 208 258-474 76-297 (472)
178 KOG1310 WD40 repeat protein [G 99.9 8.3E-20 1.8E-24 165.5 20.8 160 211-378 48-231 (758)
179 KOG1517 Guanine nucleotide bin 99.9 2E-19 4.4E-24 174.8 24.4 292 211-512 1062-1380(1387)
180 KOG0290 Conserved WD40 repeat- 99.9 1.6E-18 3.5E-23 145.1 25.8 283 210-509 41-361 (364)
181 KOG0321 WD40 repeat-containing 99.8 1.5E-19 3.2E-24 166.8 20.8 249 210-473 97-393 (720)
182 KOG1240 Protein kinase contain 99.8 6.7E-19 1.4E-23 173.9 26.5 295 211-511 1046-1431(1431)
183 KOG1587 Cytoplasmic dynein int 99.8 1.7E-18 3.7E-23 165.8 26.2 267 234-512 221-515 (555)
184 KOG1007 WD repeat protein TSSC 99.8 2.6E-19 5.7E-24 149.7 17.1 221 202-427 112-361 (370)
185 KOG0771 Prolactin regulatory e 99.8 3.9E-18 8.4E-23 150.4 22.9 196 310-510 148-351 (398)
186 KOG0644 Uncharacterized conser 99.8 5.1E-20 1.1E-24 174.6 11.8 284 198-510 170-465 (1113)
187 KOG1009 Chromatin assembly com 99.8 1E-18 2.2E-23 152.9 18.9 258 210-475 62-376 (434)
188 KOG1188 WD40 repeat protein [G 99.8 4.8E-19 1E-23 151.6 15.5 274 191-471 49-346 (376)
189 KOG4227 WD40 repeat protein [G 99.8 1.2E-18 2.5E-23 151.7 18.2 252 256-512 49-321 (609)
190 PRK11028 6-phosphogluconolacto 99.8 7.1E-17 1.5E-21 151.5 32.0 249 212-471 33-304 (330)
191 KOG1523 Actin-related protein 99.8 1.9E-17 4.1E-22 140.8 23.9 210 213-430 10-239 (361)
192 KOG1524 WD40 repeat-containing 99.8 3.5E-18 7.5E-23 154.7 20.2 267 211-509 12-282 (737)
193 KOG1524 WD40 repeat-containing 99.8 1.8E-18 4E-23 156.4 17.5 210 225-469 75-284 (737)
194 KOG0644 Uncharacterized conser 99.8 8.3E-20 1.8E-24 173.2 8.7 240 256-511 183-424 (1113)
195 KOG0290 Conserved WD40 repeat- 99.8 1E-17 2.2E-22 140.4 19.6 247 207-461 90-356 (364)
196 PRK01742 tolB translocation pr 99.8 2.1E-17 4.5E-22 159.8 22.8 235 234-494 183-426 (429)
197 KOG0649 WD40 repeat protein [G 99.8 2.3E-16 4.9E-21 129.1 23.7 239 210-468 59-313 (325)
198 KOG2139 WD40 repeat protein [G 99.8 2.7E-16 6E-21 135.9 25.3 280 215-510 100-428 (445)
199 KOG1310 WD40 repeat protein [G 99.8 6.3E-18 1.4E-22 153.5 15.9 221 257-477 44-309 (758)
200 KOG0771 Prolactin regulatory e 99.8 1.2E-17 2.6E-22 147.4 16.0 196 217-427 148-354 (398)
201 KOG4497 Uncharacterized conser 99.8 2.8E-16 6E-21 134.1 23.6 274 218-512 13-390 (447)
202 KOG1517 Guanine nucleotide bin 99.8 6.9E-17 1.5E-21 157.5 22.2 278 193-474 1087-1384(1387)
203 KOG1963 WD40 repeat protein [G 99.8 1.1E-15 2.5E-20 146.9 30.0 289 216-511 163-485 (792)
204 PF02239 Cytochrom_D1: Cytochr 99.8 2.2E-15 4.8E-20 140.8 30.7 305 191-512 15-346 (369)
205 KOG2110 Uncharacterized conser 99.8 8.6E-15 1.9E-19 127.2 31.4 236 213-472 5-249 (391)
206 PRK03629 tolB translocation pr 99.7 1.7E-15 3.7E-20 146.1 28.3 236 235-494 179-428 (429)
207 KOG1445 Tumor-specific antigen 99.7 1.2E-17 2.5E-22 154.3 12.5 209 212-427 626-844 (1012)
208 KOG2321 WD40 repeat protein [G 99.7 7.8E-16 1.7E-20 140.9 23.7 283 211-509 49-339 (703)
209 KOG2110 Uncharacterized conser 99.7 9.3E-15 2E-19 127.0 28.3 238 216-472 49-331 (391)
210 KOG1523 Actin-related protein 99.7 1.4E-15 3E-20 129.5 22.4 229 262-494 9-260 (361)
211 KOG0642 Cell-cycle nuclear pro 99.7 9E-17 1.9E-21 146.7 16.1 183 203-387 335-570 (577)
212 KOG2139 WD40 repeat protein [G 99.7 4.5E-15 9.8E-20 128.5 24.0 263 203-470 130-430 (445)
213 KOG4497 Uncharacterized conser 99.7 2.1E-14 4.4E-19 122.9 26.3 278 213-506 48-425 (447)
214 KOG1272 WD40-repeat-containing 99.7 8E-17 1.7E-21 143.5 11.0 264 216-505 132-401 (545)
215 PRK04922 tolB translocation pr 99.7 1.4E-14 3.1E-19 140.4 27.9 235 235-493 184-432 (433)
216 KOG2111 Uncharacterized conser 99.7 8.4E-15 1.8E-19 124.8 22.4 235 265-511 7-254 (346)
217 KOG1240 Protein kinase contain 99.7 6.7E-15 1.5E-19 146.1 25.0 247 258-512 1043-1333(1431)
218 PRK01742 tolB translocation pr 99.7 1.9E-15 4E-20 146.3 20.7 219 206-452 197-426 (429)
219 PRK05137 tolB translocation pr 99.7 2.4E-14 5.2E-19 139.1 28.5 235 235-494 182-433 (435)
220 KOG2394 WD40 protein DMR-N9 [G 99.7 1.5E-15 3.2E-20 138.0 18.1 201 223-493 183-384 (636)
221 KOG2111 Uncharacterized conser 99.7 1.7E-13 3.6E-18 117.0 28.7 272 216-507 8-316 (346)
222 PRK02889 tolB translocation pr 99.7 1.5E-14 3.2E-19 139.8 25.7 235 235-494 176-425 (427)
223 KOG1334 WD40 repeat protein [G 99.7 7.3E-16 1.6E-20 138.3 15.0 255 257-511 136-422 (559)
224 KOG3881 Uncharacterized conser 99.7 1.1E-14 2.4E-19 127.5 20.7 246 211-512 53-319 (412)
225 KOG2315 Predicted translation 99.7 5.1E-14 1.1E-18 129.0 25.7 270 214-511 35-388 (566)
226 KOG2394 WD40 protein DMR-N9 [G 99.7 2.1E-15 4.5E-20 137.1 15.6 146 212-358 218-384 (636)
227 KOG1272 WD40-repeat-containing 99.7 1.6E-16 3.6E-21 141.6 7.8 260 186-469 145-407 (545)
228 PRK04922 tolB translocation pr 99.7 2.5E-13 5.4E-18 131.8 29.9 212 285-511 184-409 (433)
229 PRK03629 tolB translocation pr 99.6 1.8E-13 3.8E-18 132.2 27.8 217 211-451 196-427 (429)
230 PF08662 eIF2A: Eukaryotic tra 99.6 3.6E-14 7.8E-19 120.5 20.2 155 217-385 9-185 (194)
231 PF10282 Lactonase: Lactonase, 99.6 9.4E-12 2E-16 116.9 37.8 271 228-511 2-320 (345)
232 PF10282 Lactonase: Lactonase, 99.6 5.3E-12 1.2E-16 118.5 35.8 274 212-491 35-345 (345)
233 KOG1354 Serine/threonine prote 99.6 1.1E-13 2.3E-18 119.3 21.7 293 211-510 23-431 (433)
234 PRK05137 tolB translocation pr 99.6 3.9E-13 8.5E-18 130.6 27.9 204 285-503 182-396 (435)
235 KOG2041 WD40 repeat protein [G 99.6 5.9E-14 1.3E-18 132.0 20.8 291 211-509 12-333 (1189)
236 PF02239 Cytochrom_D1: Cytochr 99.6 4.8E-13 1E-17 125.2 26.6 271 226-512 6-301 (369)
237 KOG0322 G-protein beta subunit 99.6 1.8E-14 4E-19 119.5 13.7 268 185-470 28-322 (323)
238 KOG2314 Translation initiation 99.6 3.7E-13 7.9E-18 123.2 23.2 277 216-506 213-560 (698)
239 PRK04792 tolB translocation pr 99.6 8.1E-13 1.7E-17 128.1 27.4 235 236-494 199-447 (448)
240 PRK00178 tolB translocation pr 99.6 1.1E-12 2.4E-17 127.7 28.6 235 236-494 180-428 (430)
241 PRK02889 tolB translocation pr 99.6 2.2E-13 4.8E-18 131.7 22.9 218 211-451 193-424 (427)
242 PF08662 eIF2A: Eukaryotic tra 99.6 4.2E-13 9.1E-18 114.0 20.6 157 266-434 8-186 (194)
243 TIGR02800 propeller_TolB tol-p 99.6 2.9E-12 6.3E-17 124.8 28.8 232 235-491 170-416 (417)
244 KOG4547 WD40 repeat-containing 99.6 1.4E-12 3.1E-17 120.6 23.3 194 222-428 2-221 (541)
245 KOG3881 Uncharacterized conser 99.6 8.5E-13 1.8E-17 115.8 20.2 223 213-493 105-341 (412)
246 TIGR02658 TTQ_MADH_Hv methylam 99.6 3.7E-11 8.1E-16 109.7 31.6 259 235-512 27-329 (352)
247 KOG1409 Uncharacterized conser 99.5 1.6E-12 3.4E-17 112.2 19.4 294 203-512 15-393 (404)
248 KOG1354 Serine/threonine prote 99.5 6.7E-13 1.5E-17 114.5 17.0 247 262-511 24-357 (433)
249 COG5354 Uncharacterized protei 99.5 2E-11 4.3E-16 111.0 26.8 275 212-511 31-393 (561)
250 COG2706 3-carboxymuconate cycl 99.5 1.9E-10 4.1E-15 100.9 32.0 277 210-492 36-345 (346)
251 TIGR02800 propeller_TolB tol-p 99.5 1.9E-11 4.1E-16 119.1 28.4 208 206-434 183-404 (417)
252 KOG1409 Uncharacterized conser 99.5 1.4E-12 3.1E-17 112.5 16.8 245 257-511 18-268 (404)
253 KOG0280 Uncharacterized conser 99.5 1.3E-11 2.8E-16 104.5 22.1 264 234-511 45-331 (339)
254 PRK01029 tolB translocation pr 99.5 3.9E-11 8.5E-16 115.5 28.2 240 235-495 165-426 (428)
255 PRK04792 tolB translocation pr 99.5 2E-11 4.3E-16 118.5 25.9 218 211-451 215-446 (448)
256 PRK00178 tolB translocation pr 99.5 1.8E-11 3.9E-16 119.3 25.4 218 211-451 196-427 (430)
257 TIGR02658 TTQ_MADH_Hv methylam 99.5 1E-09 2.2E-14 100.4 33.9 274 193-479 28-338 (352)
258 COG2706 3-carboxymuconate cycl 99.5 5.9E-10 1.3E-14 97.9 30.8 268 234-510 15-318 (346)
259 KOG0280 Uncharacterized conser 99.5 1.5E-11 3.2E-16 104.1 20.2 252 211-472 67-334 (339)
260 KOG4547 WD40 repeat-containing 99.5 1.3E-11 2.8E-16 114.3 20.4 186 273-511 3-218 (541)
261 PF04762 IKI3: IKI3 family; I 99.4 4.2E-10 9E-15 117.0 33.0 284 211-511 73-454 (928)
262 PRK01029 tolB translocation pr 99.4 6.6E-11 1.4E-15 113.9 25.1 223 212-453 183-426 (428)
263 KOG0974 WD-repeat protein WDR6 99.4 1.7E-11 3.7E-16 120.7 19.9 272 214-511 8-286 (967)
264 PF04762 IKI3: IKI3 family; I 99.4 1.1E-09 2.3E-14 114.0 34.1 287 207-504 114-507 (928)
265 KOG0974 WD-repeat protein WDR6 99.4 1.6E-11 3.4E-16 121.0 19.3 199 264-472 88-289 (967)
266 KOG2321 WD40 repeat protein [G 99.4 7.1E-11 1.5E-15 108.9 21.5 236 216-472 97-344 (703)
267 KOG2659 LisH motif-containing 99.4 8.1E-12 1.8E-16 103.5 13.2 169 1-172 20-204 (228)
268 TIGR03300 assembly_YfgL outer 99.4 6.7E-10 1.5E-14 106.4 27.8 258 224-511 104-377 (377)
269 KOG1064 RAVE (regulator of V-A 99.4 3.1E-12 6.8E-17 132.0 12.1 223 262-506 2207-2439(2439)
270 KOG4190 Uncharacterized conser 99.4 3.6E-12 7.8E-17 116.8 11.0 285 210-509 732-1032(1034)
271 KOG0309 Conserved WD40 repeat- 99.4 8.4E-12 1.8E-16 118.2 13.5 289 206-511 17-337 (1081)
272 COG4946 Uncharacterized protei 99.4 7.3E-10 1.6E-14 100.1 24.4 152 205-367 351-507 (668)
273 TIGR03300 assembly_YfgL outer 99.4 3E-09 6.6E-14 101.9 30.6 265 224-512 64-337 (377)
274 PLN02919 haloacid dehalogenase 99.3 2.6E-09 5.7E-14 113.3 31.8 243 267-512 571-887 (1057)
275 COG5354 Uncharacterized protei 99.3 1.7E-09 3.8E-14 98.6 24.8 268 214-505 72-421 (561)
276 PF07433 DUF1513: Protein of u 99.3 5.6E-09 1.2E-13 92.0 26.9 239 217-504 8-277 (305)
277 PLN02919 haloacid dehalogenase 99.3 6.7E-09 1.4E-13 110.3 32.8 255 217-475 571-892 (1057)
278 KOG4532 WD40-like repeat conta 99.3 1.5E-09 3.3E-14 90.9 21.7 245 217-471 71-331 (344)
279 KOG2041 WD40 repeat protein [G 99.3 1.1E-10 2.3E-15 110.5 15.9 233 262-504 13-279 (1189)
280 KOG1912 WD40 repeat protein [G 99.3 3.7E-10 7.9E-15 108.0 19.4 293 196-498 39-482 (1062)
281 PF08450 SGL: SMP-30/Gluconola 99.3 2.8E-08 6E-13 89.0 29.4 218 268-500 4-242 (246)
282 PF15492 Nbas_N: Neuroblastoma 99.3 3.8E-08 8.3E-13 84.1 27.8 240 218-482 2-270 (282)
283 COG4946 Uncharacterized protei 99.2 3.2E-08 7E-13 89.7 28.6 153 221-386 327-485 (668)
284 COG5170 CDC55 Serine/threonine 99.2 2.2E-10 4.7E-15 97.9 13.7 285 211-510 24-364 (460)
285 PRK04043 tolB translocation pr 99.2 2E-08 4.4E-13 96.1 28.9 192 265-472 189-401 (419)
286 KOG1912 WD40 repeat protein [G 99.2 6.9E-10 1.5E-14 106.1 18.2 267 214-511 16-302 (1062)
287 KOG4714 Nucleoporin [Nuclear s 99.2 3.8E-10 8.2E-15 94.1 14.3 210 216-432 39-259 (319)
288 KOG2315 Predicted translation 99.2 3.7E-09 8.1E-14 97.7 21.5 249 217-493 129-410 (566)
289 KOG1064 RAVE (regulator of V-A 99.2 1E-10 2.2E-15 121.2 11.8 214 275-512 2180-2397(2439)
290 KOG4190 Uncharacterized conser 99.2 4.5E-11 9.8E-16 109.7 8.0 204 298-509 728-943 (1034)
291 KOG2314 Translation initiation 99.2 6.5E-09 1.4E-13 95.9 21.1 248 210-471 247-573 (698)
292 PRK11138 outer membrane biogen 99.2 3.7E-08 7.9E-13 94.8 27.8 259 224-512 119-393 (394)
293 KOG3914 WD repeat protein WDR4 99.2 3.3E-10 7.2E-15 100.4 12.3 165 216-388 65-233 (390)
294 PRK04043 tolB translocation pr 99.1 7.1E-08 1.5E-12 92.4 27.7 201 285-503 169-387 (419)
295 PF13360 PQQ_2: PQQ-like domai 99.1 7.9E-08 1.7E-12 85.8 25.7 227 234-477 2-236 (238)
296 PF08450 SGL: SMP-30/Gluconola 99.1 4.1E-07 8.9E-12 81.4 29.2 221 218-460 4-244 (246)
297 KOG1832 HIV-1 Vpr-binding prot 99.1 7.7E-11 1.7E-15 114.0 5.1 221 255-499 1093-1317(1516)
298 PF13360 PQQ_2: PQQ-like domai 99.1 3.6E-07 7.9E-12 81.5 27.5 218 284-512 2-229 (238)
299 KOG2066 Vacuolar assembly/sort 99.1 2.6E-08 5.6E-13 96.3 20.5 188 213-427 39-233 (846)
300 PF15492 Nbas_N: Neuroblastoma 99.0 6.6E-07 1.4E-11 76.7 25.2 198 312-511 3-257 (282)
301 KOG3617 WD40 and TPR repeat-co 99.0 1.4E-08 3E-13 98.4 16.5 273 218-502 20-374 (1416)
302 KOG4532 WD40-like repeat conta 99.0 1.5E-07 3.3E-12 79.2 19.8 225 274-503 83-322 (344)
303 KOG1275 PAB-dependent poly(A) 99.0 1.2E-08 2.6E-13 99.7 15.1 183 274-469 146-340 (1118)
304 PRK11138 outer membrane biogen 99.0 4.6E-07 9.9E-12 87.2 25.8 272 224-512 68-352 (394)
305 KOG0309 Conserved WD40 repeat- 99.0 5.4E-09 1.2E-13 99.7 11.8 246 213-472 67-340 (1081)
306 KOG1645 RING-finger-containing 98.9 3E-07 6.6E-12 81.9 20.6 247 256-511 186-459 (463)
307 KOG2695 WD40 repeat protein [G 98.9 8.1E-09 1.8E-13 89.8 10.0 159 219-390 217-388 (425)
308 KOG4649 PQQ (pyrrolo-quinoline 98.9 5.8E-06 1.3E-10 69.8 25.9 144 225-379 23-166 (354)
309 PF00400 WD40: WD domain, G-be 98.9 4.4E-09 9.5E-14 63.6 5.8 39 473-511 1-39 (39)
310 PF00930 DPPIV_N: Dipeptidyl p 98.9 2.9E-06 6.2E-11 80.2 27.8 264 222-501 1-345 (353)
311 KOG0882 Cyclophilin-related pe 98.9 2.3E-07 5E-12 83.8 18.5 262 210-479 6-313 (558)
312 KOG4714 Nucleoporin [Nuclear s 98.9 2.4E-08 5.2E-13 83.5 11.5 160 211-379 87-255 (319)
313 KOG1920 IkappaB kinase complex 98.9 1.5E-06 3.2E-11 88.4 25.5 274 213-509 68-361 (1265)
314 KOG4649 PQQ (pyrrolo-quinoline 98.8 1.9E-05 4.1E-10 66.8 26.1 259 224-512 62-350 (354)
315 PF08513 LisH: LisH; InterPro 98.8 6.9E-09 1.5E-13 55.4 3.7 27 8-34 1-27 (27)
316 KOG3914 WD repeat protein WDR4 98.8 2.3E-08 5.1E-13 88.9 9.0 87 258-345 146-232 (390)
317 PRK02888 nitrous-oxide reducta 98.8 3.7E-06 8.1E-11 81.5 23.5 263 228-502 69-450 (635)
318 KOG2695 WD40 repeat protein [G 98.8 4.6E-08 1E-12 85.2 9.0 175 313-493 218-402 (425)
319 KOG3621 WD40 repeat-containing 98.8 1.1E-05 2.3E-10 77.7 25.4 207 214-434 34-253 (726)
320 KOG3617 WD40 and TPR repeat-co 98.7 3.2E-07 6.9E-12 89.3 15.4 111 265-378 17-131 (1416)
321 PF06977 SdiA-regulated: SdiA- 98.7 5.1E-06 1.1E-10 72.7 21.4 206 261-468 19-247 (248)
322 cd00216 PQQ_DH Dehydrogenases 98.7 1.7E-05 3.7E-10 78.3 27.9 273 225-512 61-423 (488)
323 KOG0882 Cyclophilin-related pe 98.7 1.1E-07 2.4E-12 85.8 11.2 210 262-479 8-239 (558)
324 KOG2114 Vacuolar assembly/sort 98.7 1.5E-06 3.1E-11 85.2 19.0 196 313-512 30-242 (933)
325 PF00400 WD40: WD domain, G-be 98.7 5.8E-08 1.3E-12 58.5 5.9 39 338-376 1-39 (39)
326 KOG2114 Vacuolar assembly/sort 98.7 3.2E-06 6.9E-11 82.9 20.2 208 270-486 30-259 (933)
327 KOG1008 Uncharacterized conser 98.7 2.4E-08 5.1E-13 94.1 5.5 203 214-427 57-275 (783)
328 PF06433 Me-amine-dh_H: Methyl 98.7 2.9E-05 6.3E-10 69.7 24.7 261 235-512 17-319 (342)
329 COG3391 Uncharacterized conser 98.7 0.00011 2.5E-09 69.9 29.8 265 215-493 32-308 (381)
330 KOG2066 Vacuolar assembly/sort 98.7 5.2E-07 1.1E-11 87.5 13.8 179 306-509 39-229 (846)
331 KOG1920 IkappaB kinase complex 98.6 1.3E-05 2.9E-10 81.7 23.0 235 262-511 67-320 (1265)
332 PF07433 DUF1513: Protein of u 98.6 7.1E-05 1.5E-09 66.5 24.9 185 219-424 56-282 (305)
333 PF04053 Coatomer_WDAD: Coatom 98.6 3.5E-05 7.7E-10 73.8 24.5 221 212-471 31-262 (443)
334 COG5170 CDC55 Serine/threonine 98.6 2.5E-06 5.3E-11 73.6 14.0 205 305-512 25-308 (460)
335 cd00216 PQQ_DH Dehydrogenases 98.6 9.9E-05 2.1E-09 73.0 27.4 238 226-481 111-434 (488)
336 smart00667 LisH Lissencephaly 98.5 1.4E-07 3E-12 54.8 3.9 32 6-37 2-33 (34)
337 KOG1832 HIV-1 Vpr-binding prot 98.5 1.1E-07 2.4E-12 92.9 5.3 187 299-503 1095-1286(1516)
338 KOG1275 PAB-dependent poly(A) 98.5 3.1E-06 6.6E-11 83.4 14.9 183 224-427 146-342 (1118)
339 PF11768 DUF3312: Protein of u 98.5 0.00026 5.6E-09 67.4 26.8 70 440-511 258-327 (545)
340 PF00780 CNH: CNH domain; Int 98.5 0.00014 2.9E-09 66.5 24.9 236 223-482 5-266 (275)
341 PF06433 Me-amine-dh_H: Methyl 98.5 0.00029 6.3E-09 63.5 25.4 275 195-481 20-330 (342)
342 PF11768 DUF3312: Protein of u 98.5 1.8E-06 4E-11 81.5 11.9 82 206-297 252-333 (545)
343 PF04841 Vps16_N: Vps16, N-ter 98.4 0.00042 9E-09 66.6 27.0 200 286-498 62-274 (410)
344 PF00930 DPPIV_N: Dipeptidyl p 98.4 0.00027 5.8E-09 66.9 24.5 237 213-460 42-346 (353)
345 PF08596 Lgl_C: Lethal giant l 98.3 0.00015 3.4E-09 68.5 21.3 266 215-503 3-326 (395)
346 KOG3621 WD40 repeat-containing 98.3 8.3E-06 1.8E-10 78.4 12.2 143 262-406 32-180 (726)
347 KOG1008 Uncharacterized conser 98.3 3.3E-07 7.2E-12 86.6 2.8 200 263-471 56-275 (783)
348 TIGR03075 PQQ_enz_alc_DH PQQ-d 98.3 0.0028 6E-08 63.1 29.8 204 225-431 69-338 (527)
349 PRK02888 nitrous-oxide reducta 98.3 0.00022 4.7E-09 69.6 21.3 190 221-428 200-405 (635)
350 PF04053 Coatomer_WDAD: Coatom 98.3 0.0018 3.8E-08 62.4 27.1 217 262-510 31-259 (443)
351 COG3391 Uncharacterized conser 98.3 0.0044 9.5E-08 59.2 29.8 235 265-509 32-279 (381)
352 COG0823 TolB Periplasmic compo 98.3 9.9E-05 2.2E-09 70.5 18.3 200 286-499 174-385 (425)
353 KOG1645 RING-finger-containing 98.2 0.00014 3E-09 65.4 17.7 248 208-471 188-461 (463)
354 PF14583 Pectate_lyase22: Olig 98.2 0.002 4.3E-08 59.4 25.1 226 268-504 40-303 (386)
355 PF02897 Peptidase_S9_N: Proly 98.2 0.0029 6.2E-08 61.6 28.0 243 216-476 126-409 (414)
356 COG0823 TolB Periplasmic compo 98.2 0.00012 2.6E-09 70.0 17.6 159 211-381 190-361 (425)
357 PF03178 CPSF_A: CPSF A subuni 98.2 0.0013 2.8E-08 61.5 24.1 219 235-468 2-262 (321)
358 COG3204 Uncharacterized protei 98.2 0.0016 3.4E-08 56.9 21.7 174 262-435 84-271 (316)
359 KOG4640 Anaphase-promoting com 98.1 1.4E-05 3E-10 76.0 9.2 94 214-316 21-115 (665)
360 KOG0396 Uncharacterized conser 98.1 4.8E-05 1E-09 67.6 11.9 117 6-124 114-239 (389)
361 PF04841 Vps16_N: Vps16, N-ter 98.1 0.0032 7E-08 60.5 25.5 244 202-481 70-324 (410)
362 PF06977 SdiA-regulated: SdiA- 98.1 0.0014 3E-08 57.6 20.7 202 304-510 19-247 (248)
363 PF03178 CPSF_A: CPSF A subuni 98.1 0.0012 2.6E-08 61.7 21.9 213 285-509 2-261 (321)
364 COG3386 Gluconolactonase [Carb 98.1 0.0026 5.7E-08 58.0 23.0 225 219-461 30-275 (307)
365 COG3386 Gluconolactonase [Carb 98.0 0.0037 7.9E-08 57.0 22.5 221 270-503 31-276 (307)
366 TIGR03075 PQQ_enz_alc_DH PQQ-d 97.9 0.028 6E-07 56.1 31.9 154 225-383 120-338 (527)
367 PF08596 Lgl_C: Lethal giant l 97.9 0.0027 5.9E-08 60.2 21.0 237 265-511 3-288 (395)
368 PF14583 Pectate_lyase22: Olig 97.9 0.018 3.9E-07 53.3 30.7 273 220-510 42-378 (386)
369 smart00320 WD40 WD40 repeats. 97.9 4.3E-05 9.3E-10 45.3 5.6 39 473-511 2-40 (40)
370 PF14783 BBS2_Mid: Ciliary BBS 97.9 0.0022 4.7E-08 47.6 15.0 100 266-373 2-109 (111)
371 PF05096 Glu_cyclase_2: Glutam 97.9 0.016 3.5E-07 50.7 23.2 205 205-422 36-256 (264)
372 smart00668 CTLH C-terminal to 97.8 1.3E-05 2.9E-10 53.1 2.8 48 43-90 4-56 (58)
373 COG3490 Uncharacterized protei 97.8 0.0056 1.2E-07 53.1 18.8 239 218-469 72-346 (366)
374 PF14655 RAB3GAP2_N: Rab3 GTPa 97.8 0.0041 8.8E-08 58.8 19.5 97 218-316 6-118 (415)
375 KOG4640 Anaphase-promoting com 97.8 0.00015 3.3E-09 69.1 9.9 95 306-406 20-115 (665)
376 COG3490 Uncharacterized protei 97.8 0.01 2.2E-07 51.6 19.8 237 267-510 71-345 (366)
377 PF10607 CLTH: CTLH/CRA C-term 97.8 0.00012 2.6E-09 59.3 8.2 122 44-167 5-137 (145)
378 PF08553 VID27: VID27 cytoplas 97.8 0.0037 8.1E-08 63.7 19.7 145 318-470 493-646 (794)
379 PRK13616 lipoprotein LpqB; Pro 97.7 0.0038 8.3E-08 62.6 19.6 149 214-377 350-524 (591)
380 PRK13616 lipoprotein LpqB; Pro 97.7 0.0052 1.1E-07 61.6 19.8 191 264-467 350-564 (591)
381 PF14783 BBS2_Mid: Ciliary BBS 97.7 0.0043 9.2E-08 46.1 14.2 100 216-331 2-109 (111)
382 PF14727 PHTB1_N: PTHB1 N-term 97.7 0.05 1.1E-06 51.8 29.5 269 224-509 36-356 (418)
383 PF00780 CNH: CNH domain; Int 97.7 0.038 8.2E-07 50.4 23.9 217 274-512 6-254 (275)
384 PF05694 SBP56: 56kDa selenium 97.7 0.0093 2E-07 55.6 19.2 258 203-461 53-393 (461)
385 KOG2444 WD40 repeat protein [G 97.7 6.6E-05 1.4E-09 62.6 4.9 138 363-511 33-175 (238)
386 PF05096 Glu_cyclase_2: Glutam 97.7 0.033 7.2E-07 48.8 22.8 118 265-386 46-165 (264)
387 PF08553 VID27: VID27 cytoplas 97.7 0.0011 2.4E-08 67.3 14.4 144 360-510 493-644 (794)
388 KOG2079 Vacuolar assembly/sort 97.6 0.0011 2.3E-08 67.6 13.6 103 274-378 98-203 (1206)
389 KOG4499 Ca2+-binding protein R 97.6 0.029 6.3E-07 47.4 18.9 207 277-493 29-263 (310)
390 PF07995 GSDH: Glucose / Sorbo 97.6 0.07 1.5E-06 49.9 26.6 247 215-466 3-330 (331)
391 COG3204 Uncharacterized protei 97.5 0.033 7.1E-07 49.0 19.5 162 211-379 83-264 (316)
392 smart00320 WD40 WD40 repeats. 97.5 0.0003 6.5E-09 41.4 5.4 39 338-376 2-40 (40)
393 KOG1897 Damage-specific DNA bi 97.5 0.15 3.2E-06 52.4 30.2 288 211-509 528-894 (1096)
394 KOG4441 Proteins containing BT 97.5 0.018 3.9E-07 57.8 20.2 226 274-512 284-545 (571)
395 PF05694 SBP56: 56kDa selenium 97.5 0.066 1.4E-06 50.2 21.9 196 274-473 86-344 (461)
396 PHA02713 hypothetical protein; 97.5 0.04 8.6E-07 55.5 22.6 198 274-483 303-545 (557)
397 TIGR03074 PQQ_membr_DH membran 97.5 0.08 1.7E-06 54.9 24.7 120 224-346 193-354 (764)
398 PHA02713 hypothetical protein; 97.4 0.024 5.1E-07 57.1 20.3 184 317-512 303-532 (557)
399 KOG2079 Vacuolar assembly/sort 97.3 0.00075 1.6E-08 68.6 7.3 96 410-506 100-198 (1206)
400 KOG4441 Proteins containing BT 97.3 0.08 1.7E-06 53.3 21.6 233 222-474 282-549 (571)
401 PF02897 Peptidase_S9_N: Proly 97.2 0.23 5.1E-06 48.3 28.0 220 265-496 125-383 (414)
402 KOG2395 Protein involved in va 97.2 0.017 3.8E-07 54.6 14.6 138 229-378 350-500 (644)
403 TIGR02604 Piru_Ver_Nterm putat 97.1 0.25 5.4E-06 47.1 23.3 143 215-367 15-202 (367)
404 PF12894 Apc4_WD40: Anaphase-p 97.0 0.0025 5.4E-08 39.4 5.4 30 213-242 11-40 (47)
405 KOG2395 Protein involved in va 97.0 0.013 2.9E-07 55.3 12.5 141 323-470 351-499 (644)
406 PRK10115 protease 2; Provision 97.0 0.57 1.2E-05 48.6 32.9 240 215-474 128-397 (686)
407 PF12894 Apc4_WD40: Anaphase-p 97.0 0.003 6.5E-08 39.0 5.4 35 262-297 10-44 (47)
408 PF12234 Rav1p_C: RAVE protein 96.9 0.033 7.1E-07 55.5 15.1 112 265-378 31-156 (631)
409 KOG2280 Vacuolar assembly/sort 96.9 0.18 3.9E-06 50.2 19.1 201 284-494 63-270 (829)
410 TIGR03074 PQQ_membr_DH membran 96.8 0.73 1.6E-05 48.0 24.2 113 275-388 194-354 (764)
411 PF10168 Nup88: Nuclear pore c 96.8 0.77 1.7E-05 47.4 23.9 75 263-338 84-181 (717)
412 PF15390 DUF4613: Domain of un 96.8 0.58 1.3E-05 45.5 26.6 123 211-336 54-186 (671)
413 KOG4499 Ca2+-binding protein R 96.8 0.082 1.8E-06 44.8 13.8 93 266-358 160-263 (310)
414 PF14655 RAB3GAP2_N: Rab3 GTPa 96.7 0.56 1.2E-05 44.8 22.7 42 348-389 307-348 (415)
415 KOG2444 WD40 repeat protein [G 96.7 0.0057 1.2E-07 51.4 7.0 105 275-379 70-178 (238)
416 COG1520 FOG: WD40-like repeat 96.7 0.57 1.2E-05 44.8 22.7 198 274-482 68-279 (370)
417 PHA03098 kelch-like protein; P 96.7 0.29 6.3E-06 49.5 20.4 195 223-435 293-519 (534)
418 PHA03098 kelch-like protein; P 96.7 0.22 4.8E-06 50.4 19.2 190 273-474 293-514 (534)
419 KOG3630 Nuclear pore complex, 96.6 0.029 6.3E-07 58.0 12.4 149 349-502 101-262 (1405)
420 PF10647 Gmad1: Lipoprotein Lp 96.6 0.47 1E-05 42.4 19.8 166 265-433 25-203 (253)
421 PRK10115 protease 2; Provision 96.6 1.2 2.5E-05 46.4 28.6 112 264-378 127-255 (686)
422 PF10647 Gmad1: Lipoprotein Lp 96.5 0.57 1.2E-05 41.9 22.9 150 308-464 25-188 (253)
423 KOG3630 Nuclear pore complex, 96.5 0.023 4.9E-07 58.8 10.6 157 207-365 94-260 (1405)
424 PF07995 GSDH: Glucose / Sorbo 96.5 0.75 1.6E-05 43.1 25.3 240 265-508 3-330 (331)
425 COG4257 Vgb Streptogramin lyas 96.5 0.53 1.2E-05 41.2 20.8 238 264-511 62-303 (353)
426 KOG2817 Predicted E3 ubiquitin 96.4 0.033 7.2E-07 50.9 9.8 102 3-104 111-226 (394)
427 TIGR03118 PEPCTERM_chp_1 conse 96.3 0.73 1.6E-05 41.2 24.9 226 265-493 24-307 (336)
428 COG5276 Uncharacterized conser 96.3 0.71 1.5E-05 40.8 24.6 277 211-511 84-367 (370)
429 PF10168 Nup88: Nuclear pore c 96.3 0.53 1.1E-05 48.6 19.1 82 214-296 85-182 (717)
430 TIGR03118 PEPCTERM_chp_1 conse 96.2 0.85 1.8E-05 40.8 20.3 203 307-512 23-278 (336)
431 KOG1897 Damage-specific DNA bi 96.2 2 4.4E-05 44.6 24.3 231 263-502 487-733 (1096)
432 KOG2247 WD40 repeat-containing 96.1 0.00065 1.4E-08 63.1 -2.4 144 219-374 40-184 (615)
433 PF14870 PSII_BNR: Photosynthe 96.0 1.2 2.5E-05 40.8 27.7 236 216-468 64-301 (302)
434 PHA02790 Kelch-like protein; P 95.8 1 2.3E-05 44.6 18.5 186 274-473 271-472 (480)
435 KOG1916 Nuclear protein, conta 95.8 0.0098 2.1E-07 59.7 4.1 166 211-383 130-328 (1283)
436 COG4257 Vgb Streptogramin lyas 95.8 1.2 2.7E-05 39.0 18.1 200 305-512 60-261 (353)
437 KOG2377 Uncharacterized conser 95.6 1.1 2.4E-05 42.2 16.0 117 262-380 65-187 (657)
438 PHA02790 Kelch-like protein; P 95.4 0.82 1.8E-05 45.4 16.2 180 317-512 271-469 (480)
439 PF15390 DUF4613: Domain of un 95.4 2.3 5.1E-05 41.6 18.0 117 262-379 55-187 (671)
440 PF14870 PSII_BNR: Photosynthe 95.3 2.3 4.9E-05 38.9 32.1 282 207-510 10-301 (302)
441 PF08728 CRT10: CRT10; InterP 95.3 1.5 3.2E-05 44.7 17.1 151 225-377 49-245 (717)
442 COG5276 Uncharacterized conser 95.1 2.2 4.8E-05 37.9 21.3 197 263-472 86-286 (370)
443 TIGR02604 Piru_Ver_Nterm putat 95.1 1.6 3.5E-05 41.6 16.4 145 350-504 15-204 (367)
444 KOG2247 WD40 repeat-containing 95.0 0.0032 6.9E-08 58.8 -1.8 144 351-505 37-180 (615)
445 PF13449 Phytase-like: Esteras 95.0 2.1 4.6E-05 40.0 16.7 152 213-365 19-231 (326)
446 PF14781 BBS2_N: Ciliary BBSom 95.0 1.3 2.8E-05 34.4 13.6 123 217-344 2-133 (136)
447 PF12234 Rav1p_C: RAVE protein 94.9 1.1 2.3E-05 45.2 14.7 99 410-511 42-154 (631)
448 PRK13684 Ycf48-like protein; P 94.8 3.5 7.6E-05 38.7 20.8 169 294-469 160-329 (334)
449 smart00036 CNH Domain found in 94.8 3.3 7.1E-05 38.2 27.0 237 224-481 12-280 (302)
450 PF13449 Phytase-like: Esteras 94.8 3.6 7.7E-05 38.5 17.8 150 349-500 20-231 (326)
451 COG3823 Glutamine cyclotransfe 94.7 1.6 3.5E-05 36.6 12.8 181 224-417 55-249 (262)
452 KOG2280 Vacuolar assembly/sort 94.7 2.7 5.8E-05 42.4 16.5 174 327-509 63-242 (829)
453 PF02333 Phytase: Phytase; In 94.6 4.2 9E-05 38.3 21.0 188 316-511 66-288 (381)
454 PF10313 DUF2415: Uncharacteri 94.5 0.21 4.5E-06 29.9 5.4 32 264-295 1-35 (43)
455 PF10214 Rrn6: RNA polymerase 94.5 7.8 0.00017 41.1 22.9 165 211-379 77-277 (765)
456 PF10433 MMS1_N: Mono-function 94.4 6.2 0.00013 39.6 23.0 284 226-511 1-340 (504)
457 PF10313 DUF2415: Uncharacteri 94.4 0.18 4E-06 30.1 5.1 31 214-244 1-34 (43)
458 PF03022 MRJP: Major royal jel 94.2 3.5 7.6E-05 37.6 15.7 141 371-512 35-214 (287)
459 PF14727 PHTB1_N: PTHB1 N-term 94.2 2.9 6.3E-05 40.1 15.5 148 359-511 36-202 (418)
460 PF07569 Hira: TUP1-like enhan 94.0 0.45 9.8E-06 41.3 9.1 64 448-512 17-94 (219)
461 KOG2377 Uncharacterized conser 93.9 0.95 2.1E-05 42.6 11.1 113 207-325 60-172 (657)
462 KOG4460 Nuclear pore complex, 93.9 1.5 3.3E-05 42.1 12.6 78 308-385 105-205 (741)
463 KOG1983 Tomosyn and related SN 93.9 2.2 4.8E-05 46.1 15.6 37 210-246 32-68 (993)
464 PF09398 FOP_dimer: FOP N term 93.8 0.089 1.9E-06 36.7 3.5 28 10-37 21-48 (81)
465 PRK13684 Ycf48-like protein; P 93.7 6.1 0.00013 37.1 31.2 277 211-512 43-330 (334)
466 COG3292 Predicted periplasmic 93.6 7.8 0.00017 38.0 17.3 274 212-508 163-442 (671)
467 PF14761 HPS3_N: Hermansky-Pud 93.6 4 8.8E-05 34.7 14.6 104 226-337 29-164 (215)
468 COG5167 VID27 Protein involved 93.6 1.3 2.9E-05 42.3 11.7 142 224-378 478-632 (776)
469 PF07569 Hira: TUP1-like enhan 93.2 0.67 1.5E-05 40.3 8.8 73 221-296 18-98 (219)
470 PF07250 Glyoxal_oxid_N: Glyox 93.2 2.4 5.2E-05 37.3 12.1 148 331-481 49-207 (243)
471 PF05935 Arylsulfotrans: Aryls 93.2 9.1 0.0002 38.0 17.7 149 277-431 117-305 (477)
472 PF08728 CRT10: CRT10; InterP 93.1 2.1 4.5E-05 43.7 13.0 119 216-335 103-245 (717)
473 TIGR03606 non_repeat_PQQ dehyd 92.9 9.9 0.00021 37.0 20.1 116 347-462 28-166 (454)
474 PF03022 MRJP: Major royal jel 92.9 7.4 0.00016 35.5 20.2 160 216-379 3-216 (287)
475 COG5167 VID27 Protein involved 92.4 2.6 5.7E-05 40.4 11.8 138 357-503 476-623 (776)
476 COG4590 ABC-type uncharacteriz 92.3 3.5 7.6E-05 39.0 12.3 228 274-510 126-383 (733)
477 COG5290 IkappaB kinase complex 92.3 12 0.00025 38.4 16.4 67 262-335 75-141 (1243)
478 PF10395 Utp8: Utp8 family; I 92.1 15 0.00033 37.3 23.9 232 269-511 33-303 (670)
479 TIGR03548 mutarot_permut cycli 91.7 11 0.00025 35.1 22.0 105 274-381 72-197 (323)
480 TIGR02276 beta_rpt_yvtn 40-res 91.6 1.1 2.3E-05 26.7 6.0 40 451-491 1-41 (42)
481 TIGR03606 non_repeat_PQQ dehyd 91.5 15 0.00032 35.9 31.7 115 211-327 27-166 (454)
482 PLN02153 epithiospecifier prot 91.5 13 0.00027 35.1 22.3 111 224-339 32-170 (341)
483 PF10395 Utp8: Utp8 family; I 91.3 19 0.0004 36.7 23.4 220 202-427 60-305 (670)
484 KOG4460 Nuclear pore complex, 91.1 2.9 6.3E-05 40.3 10.6 69 443-511 105-196 (741)
485 COG5290 IkappaB kinase complex 90.9 5.4 0.00012 40.6 12.6 46 197-242 96-141 (1243)
486 PF14781 BBS2_N: Ciliary BBSom 90.9 6.4 0.00014 30.7 12.3 120 354-476 4-130 (136)
487 PF12657 TFIIIC_delta: Transcr 90.8 1.9 4.2E-05 35.9 8.6 30 265-294 87-122 (173)
488 KOG2063 Vacuolar assembly/sort 90.8 23 0.00049 37.6 17.5 75 220-297 21-100 (877)
489 PF09862 DUF2089: Protein of u 90.7 0.61 1.3E-05 35.0 4.8 78 5-98 34-113 (113)
490 COG3823 Glutamine cyclotransfe 90.5 9.7 0.00021 32.2 13.5 104 274-381 55-161 (262)
491 KOG1916 Nuclear protein, conta 90.3 0.52 1.1E-05 48.1 5.4 111 221-341 191-328 (1283)
492 COG3877 Uncharacterized protei 89.9 1.5 3.2E-05 31.8 5.8 79 5-99 42-122 (122)
493 PF07250 Glyoxal_oxid_N: Glyox 89.8 12 0.00025 33.1 12.7 142 237-388 48-207 (243)
494 PF12657 TFIIIC_delta: Transcr 89.8 2 4.4E-05 35.8 7.9 28 485-512 87-120 (173)
495 COG3292 Predicted periplasmic 89.8 17 0.00036 35.9 14.5 233 262-505 163-397 (671)
496 PF08801 Nucleoporin_N: Nup133 89.8 8.5 0.00018 37.6 13.5 28 484-511 190-217 (422)
497 PRK14131 N-acetylneuraminic ac 89.3 21 0.00045 34.2 19.3 223 277-505 42-354 (376)
498 PLN02153 epithiospecifier prot 89.3 20 0.00043 33.8 23.7 57 419-475 217-288 (341)
499 TIGR01063 gyrA DNA gyrase, A s 89.2 34 0.00073 36.5 26.4 234 273-510 494-766 (800)
500 PF11715 Nup160: Nucleoporin N 89.1 2.3 5E-05 43.2 9.3 79 223-301 156-256 (547)
No 1
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=2e-100 Score=640.10 Aligned_cols=508 Identities=71% Similarity=1.150 Sum_probs=499.7
Q ss_pred CccccchhhHHHHHHHHHHhcChHHHHHHHHhhcCccccccccHHHHHhhhccCCchhhhhhhccccCChhHHHHHHHHH
Q 010362 1 MTLEIEARDVIKIVLQFCKENSLQQTFQTLQNECQVSLNTVDSIETFVADINSGRWDAILPQVAQLKLPRNKLEDLYEQI 80 (512)
Q Consensus 1 ~~~~~~~~e~~~li~q~L~e~G~~~t~~~l~~Es~~~~~~~~~~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~l~~~~ 80 (512)
|++++.+.+|+|||.|||+|+.+..|+++||+|.++++|+.++++.|.++|.+|+||.+++.++++++|++.+.++|||+
T Consensus 1 msieiessdVIrli~QflKE~~L~rtl~tLQeEt~VSLNTVDSvd~Fv~dI~sG~WD~VL~~vqsLKLP~kkL~dLYEqi 80 (508)
T KOG0275|consen 1 MSIEIESSDVIRLIEQFLKENSLHRTLQTLQEETNVSLNTVDSVDGFVNDINSGHWDTVLKTVQSLKLPDKKLIDLYEQI 80 (508)
T ss_pred CceeeecchHHHHHHHHHhhhhHHHHHHHHHHhhccceeechhHHHHHHhcccCchHHHHHHHHhccCchhHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCChHHHHHHHHhcchhhhcccCChHHHHHHHHHhcccCCCccccccCChhhHHHHHHHHHHhccccccCchHH
Q 010362 81 VLEMIELRELDTARAILRQTQAMGVMKQEQPERYLRLEHLLVRTYFDAHEAYQDSTKERRRAQIAQAIAAEVSVVPPSRL 160 (512)
Q Consensus 81 ~~e~l~~~~~~~a~~~lr~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~rl 160 (512)
.+|++|.+|...|+.+||+.-++..+++.+|++|.+|+.++.+.++++.++|.+.++|++|+.+++++..++.++||+||
T Consensus 81 vlEliELREL~tAR~~lRQTdpM~~lKQ~~peRy~~lE~ll~R~YFDp~EaY~dssKEkrRa~IAQ~ls~EV~VVppSRL 160 (508)
T KOG0275|consen 81 VLELIELRELGTARSLLRQTDPMIMLKQIQPERYIRLENLLNRSYFDPREAYGDSSKEKRRAVIAQALSGEVHVVPPSRL 160 (508)
T ss_pred HHHHHHHHhhhHHHHHHhccCceehhhccChHHHHHHHHHhcccccChhhhcCcchHHHHHHHHHHHhcCceEEcChHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhcCCCCCCCeeeeccCcccccccccccCccccceEEEecCcCceEEEEECCCCCEEEEEeCCCeEEEE
Q 010362 161 MALIGQALKWQQHQGLLPPGTQFDLFRGTAAMKQDVEDMYPTTLSHTIKFGTKSHAECARFSPDGQFLVSCSFDGFIEVW 240 (512)
Q Consensus 161 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~sg~~dg~i~iw 240 (512)
++|++|+++||+.++++|||..+++|+|....+....+.+|....+.++++.++.+.|..|||||++|++|+.||.|.+|
T Consensus 161 laLlGQaLKWQqHQGLLPPGt~iDLFRGkAA~K~~~Ee~~Pt~l~r~IKFg~KSh~EcA~FSPDgqyLvsgSvDGFiEVW 240 (508)
T KOG0275|consen 161 LALLGQALKWQQHQGLLPPGTTIDLFRGKAAMKDQEEERYPTQLARSIKFGQKSHVECARFSPDGQYLVSGSVDGFIEVW 240 (508)
T ss_pred HHHHHHHhhhHhhcCCCCCCceeeeccchhhhhhhHhhhchHHhhhheecccccchhheeeCCCCceEeeccccceeeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCCeeeccccccccceeeccCcceeEEEEcCCCCeEEEEeCCCeEEEEEccCCeeeEEeccccccCeEEEEEecCCCE
Q 010362 241 DYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQ 320 (512)
Q Consensus 241 d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 320 (512)
|+.+|+....++++....+..+..+|.|+.|+.|..++|+|+.||.|++|.+.+|.+++++...|...|+|+.|+.|+..
T Consensus 241 ny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~Sq 320 (508)
T KOG0275|consen 241 NYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQ 320 (508)
T ss_pred hhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCcEEEEeCCCCceeEEeeCCccceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeecCCCCCCCCCCceeE
Q 010362 321 ILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVN 400 (512)
Q Consensus 321 l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~ 400 (512)
+++++.|.++++.-+++|++++.+++|.+.|+...|+++|..+++++.||+|++|+.++.+|..++++.. .+.+|+
T Consensus 321 iLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~----~d~~vn 396 (508)
T KOG0275|consen 321 ILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLG----TDYPVN 396 (508)
T ss_pred hhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCC----Ccccce
Confidence 9999999999999999999999999999999999999999999999999999999999999999998764 678999
Q ss_pred EEEEcCCCCCeEEEEcCCCcEEEEecCCeEEEEeeCCcccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCeeEEecc
Q 010362 401 SVHLFPKNPDHIVVCNKTSSIYIMTLQGQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMK 480 (512)
Q Consensus 401 ~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~~ 480 (512)
++...|.++..+++|...+++++.++.|+.++.+..+...++...+++.||.|.++++.++|+.+++|...+|++..++.
T Consensus 397 sv~~~PKnpeh~iVCNrsntv~imn~qGQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~ 476 (508)
T KOG0275|consen 397 SVILLPKNPEHFIVCNRSNTVYIMNMQGQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLP 476 (508)
T ss_pred eEEEcCCCCceEEEEcCCCeEEEEeccceEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCeEEEEEcCCCCeEEEEECCCeEEEecC
Q 010362 481 VHEKDVIGVTHHPHRNLLATYGEDCTMKLWKP 512 (512)
Q Consensus 481 ~h~~~v~~v~~~p~~~~l~s~~~dg~i~iW~~ 512 (512)
.|...|..++.+|..+.+|+-+.||.+++|+|
T Consensus 477 VhEkdvIGl~HHPHqNllAsYsEDgllKLWkp 508 (508)
T KOG0275|consen 477 VHEKDVIGLTHHPHQNLLASYSEDGLLKLWKP 508 (508)
T ss_pred cccccccccccCcccchhhhhcccchhhhcCC
Confidence 99999999999999999999999999999997
No 2
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=4.6e-71 Score=477.12 Aligned_cols=486 Identities=19% Similarity=0.303 Sum_probs=403.7
Q ss_pred ccchhhHHHHHHHHHHhcChHHHHHHHHhhcCccccccccHHHHHhhhccCCchhhhhhhccccCCh-----hHHHHHHH
Q 010362 4 EIEARDVIKIVLQFCKENSLQQTFQTLQNECQVSLNTVDSIETFVADINSGRWDAILPQVAQLKLPR-----NKLEDLYE 78 (512)
Q Consensus 4 ~~~~~e~~~li~q~L~e~G~~~t~~~l~~Es~~~~~~~~~~~~~~~~i~~g~w~~~~~~l~~~~~~~-----~~~~~l~~ 78 (512)
.|.+.|++|+++|+|.++||.+|+..||.|||+-+.+ ..++.|.++|++|+|+.++..+..+.+++ ++.|.+.+
T Consensus 14 likk~efi~il~q~l~slgy~~S~~~lE~es~ll~~t-at~klf~q~vlqg~w~q~v~~~~~i~~~de~~~~ea~fLv~k 92 (519)
T KOG0293|consen 14 LIKKGEFIRILWQILYSLGYDHSSPLLEWESGLLIPT-ATTKLFDQQVLQGQWDQQVMSLVRISFEDERNRKEAMFLVNK 92 (519)
T ss_pred eeccchhhHhHHHHHHhcCccccchhhHHhhCccccc-chHHHHHHHHHcccHHHHHHHHhhccCcchhhhHHHHHHHHH
Confidence 4678899999999999999999999999999999988 66889999999999999999887775543 56889999
Q ss_pred HHHHHHHHcCChHHHHHHHHhcchhhhcccCChHHHHHHHHHhcc-cCCCccccccCChhhHHHHHHHHHHhc---cccc
Q 010362 79 QIVLEMIELRELDTARAILRQTQAMGVMKQEQPERYLRLEHLLVR-TYFDAHEAYQDSTKERRRAQIAQAIAA---EVSV 154 (512)
Q Consensus 79 ~~~~e~l~~~~~~~a~~~lr~~~~~~~~~~~~~~~~~~l~~ll~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~ 154 (512)
|+|+|++..+....|+.+||+...+..+. .+++++|...+.. ..+...+..-...-...|..++.++.. +..+
T Consensus 93 Q~fLEf~k~~~is~al~~l~~~~~~lr~~---~kk~~el~~sll~sn~~~~ne~~~~~~~~n~R~~ll~elskyi~p~il 169 (519)
T KOG0293|consen 93 QIFLEFLKTGSISHALPVLRNPVLYLRKN---KKKFHELASSLLVSNDQFSNEENTTAQLNNERDKLLDELSKYIPPNIL 169 (519)
T ss_pred HHHHHHHhhccHhhhhHhhhcchhhhhhh---HHHHHHHHHHHhccccccccccchhhhhchhHHHHHHHHHhhCCHhhc
Confidence 99999999999999999999977665544 4588887665543 333333333222222345666666654 4468
Q ss_pred cCchHHHHHHHHHHHhhhhcCCCCCC-CeeeeccCcccccccccccCccccceEEEecCcCceEEEEECCCCCEEEEEeC
Q 010362 155 VPPSRLMALIGQALKWQQHQGLLPPG-TQFDLFRGTAAMKQDVEDMYPTTLSHTIKFGTKSHAECARFSPDGQFLVSCSF 233 (512)
Q Consensus 155 ~p~~rl~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~sg~~ 233 (512)
+|++||..|+.||+.+|+++|+|++. ..+.++. .+.+.....|....+.+. .|.+.|+.+.||++|++||+++.
T Consensus 170 lP~rRLehLl~qAv~~Q~d~cvyhnsldsvsll~----Dh~c~~~qip~qt~qil~-~htdEVWfl~FS~nGkyLAsaSk 244 (519)
T KOG0293|consen 170 LPKRRLEHLLEQAVKYQRDSCVYHNSLDSVSLLS----DHFCGRLQIPSQTWQILQ-DHTDEVWFLQFSHNGKYLASASK 244 (519)
T ss_pred CChHHHHHHHHHHHHHHHhHhHHhcccchhhhhh----hcccCcccCCchhhhhHh-hCCCcEEEEEEcCCCeeEeeccC
Confidence 99999999999999999999999973 1222222 244555666777777776 99999999999999999999999
Q ss_pred CCeEEEEEcCCCeeeccccccccceeeccCcceeEEEEcCCCCeEEEEeCCCeEEEEEccCCeeeEEeccccccCeEEEE
Q 010362 234 DGFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLV 313 (512)
Q Consensus 234 dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~ 313 (512)
|.+..||++..... +...+++.+|..+|..+.||||.++|++|+.|..+++||+.+|.....+..++...+.+++
T Consensus 245 D~Taiiw~v~~d~~-----~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~ 319 (519)
T KOG0293|consen 245 DSTAIIWIVVYDVH-----FKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCA 319 (519)
T ss_pred CceEEEEEEecCcc-----eeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeE
Confidence 99999999765443 2344578889999999999999999999999999999999999999988877778999999
Q ss_pred EecCCCEEEEEeCCCcEEEEeCCCCceeEEeeCCc-cceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeecCCCCCC
Q 010362 314 FSRDGSQILSTSFDSTARIHGLKSGKLLKEFRGHS-SYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPL 392 (512)
Q Consensus 314 ~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 392 (512)
|.|||..+++|+.|+++..||+ .|.....+++-. ..|.+++.++||+++++.+.|..|++|+..+......+
T Consensus 320 W~pDg~~~V~Gs~dr~i~~wdl-Dgn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~li------ 392 (519)
T KOG0293|consen 320 WCPDGFRFVTGSPDRTIIMWDL-DGNILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLI------ 392 (519)
T ss_pred EccCCceeEecCCCCcEEEecC-CcchhhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhccc------
Confidence 9999999999999999999998 466666666533 46999999999999999999999999998876544333
Q ss_pred CCCCceeEEEEEcCCCCCeEEEEcCCCcEEEEecCCeEEEEeeCCcccCCcEEEEEEC-CCCCEEEEEeCCCeEEEEEcC
Q 010362 393 RGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQVVKSFSSGKREGGDFVAACVS-PKGEWIYCVGEDRNLYCFSHQ 471 (512)
Q Consensus 393 ~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~s-~~g~~l~~g~~dg~i~iwd~~ 471 (512)
....+++++.++.++ .++++.-.+..+++||+....+.....+...+..+...||. .+..++++|++|+.|+||+..
T Consensus 393 -se~~~its~~iS~d~-k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~ 470 (519)
T KOG0293|consen 393 -SEEQPITSFSISKDG-KLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRI 470 (519)
T ss_pred -cccCceeEEEEcCCC-cEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEcc
Confidence 245689999999887 89999999999999999965554444455556677788884 466999999999999999999
Q ss_pred CCeeEEeccccCCCeEEEEEcC-CCCeEEEEECCCeEEEecC
Q 010362 472 SGKLEHLMKVHEKDVIGVTHHP-HRNLLATYGEDCTMKLWKP 512 (512)
Q Consensus 472 ~~~~~~~~~~h~~~v~~v~~~p-~~~~l~s~~~dg~i~iW~~ 512 (512)
+|+++.++.||...|++|+|+| +..++||+|+||+||||.|
T Consensus 471 sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~ 512 (519)
T KOG0293|consen 471 SGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGP 512 (519)
T ss_pred CCceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecC
Confidence 9999999999999999999999 6679999999999999976
No 3
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.4e-51 Score=351.79 Aligned_cols=290 Identities=26% Similarity=0.408 Sum_probs=257.7
Q ss_pred cceEEEecCcCceEEEEECCCCCEEEEEeCCCeEEEEEcCCCeeeccccccccceeeccCcceeEEEEcCCCCeEEEEeC
Q 010362 204 LSHTIKFGTKSHAECARFSPDGQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQ 283 (512)
Q Consensus 204 ~~~~~~~~h~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~ 283 (512)
+..++. ||...|.|++|+|+|..||+|+.|.++++||+.+.... .+.++|...|.|++|+|||+.||+|+.
T Consensus 107 CssS~~-GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~--------~t~KgH~~WVlcvawsPDgk~iASG~~ 177 (480)
T KOG0271|consen 107 CSSSIA-GHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPL--------FTCKGHKNWVLCVAWSPDGKKIASGSK 177 (480)
T ss_pred eccccC-CCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcc--------eeecCCccEEEEEEECCCcchhhcccc
Confidence 334444 99999999999999999999999999999999886543 466789999999999999999999999
Q ss_pred CCeEEEEEccCCeeeEEeccccccCeEEEEEec-----CCCEEEEEeCCCcEEEEeCCCCceeEEeeCCccceeEEEEcC
Q 010362 284 DGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSR-----DGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTN 358 (512)
Q Consensus 284 dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~-----~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~ 358 (512)
||+|++||..+|+++..-..+|...|++++|.| ..++|++++.||.|+|||+..+.++..+.+|..+|+|+.|-.
T Consensus 178 dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG 257 (480)
T KOG0271|consen 178 DGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGG 257 (480)
T ss_pred CCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcC
Confidence 999999999999988776679999999999986 567999999999999999999999999999999999999986
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCceeeecCCCCCCCCCCceeEEEEEcC--------------------------------
Q 010362 359 DGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFP-------------------------------- 406 (512)
Q Consensus 359 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-------------------------------- 406 (512)
+| ++++|+.|++|++|+...|.+...++ +|...|+.++.+.
T Consensus 258 ~g-liySgS~DrtIkvw~a~dG~~~r~lk------GHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~ 330 (480)
T KOG0271|consen 258 EG-LIYSGSQDRTIKVWRALDGKLCRELK------GHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEA 330 (480)
T ss_pred Cc-eEEecCCCceEEEEEccchhHHHhhc------ccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHH
Confidence 64 89999999999999999988877765 6777888877761
Q ss_pred ---CCCCeEEEEcCCCcEEEEecC--CeEEEEeeCCcccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCeeEEeccc
Q 010362 407 ---KNPDHIVVCNKTSSIYIMTLQ--GQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKV 481 (512)
Q Consensus 407 ---~~~~~l~~~~~~~~i~~~~~~--~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~ 481 (512)
+++..+++|+.|..+.+|+.. .+++..... |..-++.+.||||+++|++++.|..|++||.++|+.+.++.+
T Consensus 331 ~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtg---Hq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRG 407 (480)
T KOG0271|consen 331 VLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTG---HQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRG 407 (480)
T ss_pred hhccCcceeEEecCCceEEEecccccccchhhhhc---hhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhh
Confidence 122469999999999999976 233434333 456799999999999999999999999999999999999999
Q ss_pred cCCCeEEEEEcCCCCeEEEEECCCeEEEecC
Q 010362 482 HEKDVIGVTHHPHRNLLATYGEDCTMKLWKP 512 (512)
Q Consensus 482 h~~~v~~v~~~p~~~~l~s~~~dg~i~iW~~ 512 (512)
|-..|..++|+.|.++|+|||.|.++++|+.
T Consensus 408 Hv~~VYqvawsaDsRLlVS~SkDsTLKvw~V 438 (480)
T KOG0271|consen 408 HVAAVYQVAWSADSRLLVSGSKDSTLKVWDV 438 (480)
T ss_pred ccceeEEEEeccCccEEEEcCCCceEEEEEe
Confidence 9999999999999999999999999999983
No 4
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=1.2e-50 Score=356.66 Aligned_cols=279 Identities=18% Similarity=0.355 Sum_probs=247.6
Q ss_pred CcCceEEEEECCCCCEEEEEeCCCeEEEEEcCCCeeeccccccccceeeccCcceeEEEEcCCCCeEEEEeCCCeEEEEE
Q 010362 212 TKSHAECARFSPDGQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWR 291 (512)
Q Consensus 212 h~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~vwd 291 (512)
.+..|++++|+.+|..||+|+.||.++||+.. |.+...+ ..|.++|.++.|+.+|++|++++.||++.+||
T Consensus 234 ~nkdVT~L~Wn~~G~~LatG~~~G~~riw~~~-G~l~~tl--------~~HkgPI~slKWnk~G~yilS~~vD~ttilwd 304 (524)
T KOG0273|consen 234 SNKDVTSLDWNNDGTLLATGSEDGEARIWNKD-GNLISTL--------GQHKGPIFSLKWNKKGTYILSGGVDGTTILWD 304 (524)
T ss_pred ccCCcceEEecCCCCeEEEeecCcEEEEEecC-chhhhhh--------hccCCceEEEEEcCCCCEEEeccCCccEEEEe
Confidence 34579999999999999999999999999954 4444443 34999999999999999999999999999999
Q ss_pred ccCCeeeEEeccccccCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeeCCccceeEEEEcCCCCEEEEEeCCCc
Q 010362 292 IRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCT 371 (512)
Q Consensus 292 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 371 (512)
..+|.....+. -|..+...+.|-. ...|++++.|+.|+++-+....++.++.+|.++|.++.|+|.|.+|++++.|++
T Consensus 305 ~~~g~~~q~f~-~~s~~~lDVdW~~-~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~T 382 (524)
T KOG0273|consen 305 AHTGTVKQQFE-FHSAPALDVDWQS-NDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGT 382 (524)
T ss_pred ccCceEEEeee-eccCCccceEEec-CceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCe
Confidence 99999988887 6777778899974 457899999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCceeeecCCCCCCCCCCceeEEEEEcCCCC--------CeEEEEcCCCcEEEEecC-CeEEEEeeCCcccCC
Q 010362 372 VKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNP--------DHIVVCNKTSSIYIMTLQ-GQVVKSFSSGKREGG 442 (512)
Q Consensus 372 i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--------~~l~~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~ 442 (512)
++||+.....+...+. .|...|+.+.|+|.++ ..+++++.|+.+++||+. +.++..+.. |..
T Consensus 383 lkiWs~~~~~~~~~l~------~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~k---H~~ 453 (524)
T KOG0273|consen 383 LKIWSMGQSNSVHDLQ------AHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMK---HQE 453 (524)
T ss_pred eEeeecCCCcchhhhh------hhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeecc---CCC
Confidence 9999988777666554 6788999999998753 579999999999999998 666666554 456
Q ss_pred cEEEEEECCCCCEEEEEeCCCeEEEEEcCCCeeEEeccccCCCeEEEEEcCCCCeEEEEECCCeEEEec
Q 010362 443 DFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPHRNLLATYGEDCTMKLWK 511 (512)
Q Consensus 443 ~~~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~~~dg~i~iW~ 511 (512)
+|.+++|+|+|+|+++|+.||.|++|+.+++++.+.+.+ .+.|..++|+.+|..|..+-.||.+++-|
T Consensus 454 pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~-~~~Ifel~Wn~~G~kl~~~~sd~~vcvld 521 (524)
T KOG0273|consen 454 PVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQG-TGGIFELCWNAAGDKLGACASDGSVCVLD 521 (524)
T ss_pred ceEEEEecCCCcEEEecCCCCeeEeccccchheeEeecC-CCeEEEEEEcCCCCEEEEEecCCCceEEE
Confidence 799999999999999999999999999999999999975 45699999999999999999999998755
No 5
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=6.2e-50 Score=347.58 Aligned_cols=286 Identities=26% Similarity=0.383 Sum_probs=265.9
Q ss_pred EecCcCceEEEEECCCCCEEEEEeCCCeEEEEEcCCCeeeccccccccceeeccCcceeEEEEcCC--CCeEEEEeCCCe
Q 010362 209 KFGTKSHAECARFSPDGQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRD--SEMLASGSQDGK 286 (512)
Q Consensus 209 ~~~h~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~--~~~l~s~~~dg~ 286 (512)
+.|...+|..+.||+|++.|||||.+|.++||+..+..... ++.||...|.++.|+|. +..+|+|+.||+
T Consensus 171 Q~gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~--------~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgt 242 (459)
T KOG0272|consen 171 QVGDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQ--------TLRGHTSRVGAAVFHPVDSDLNLATASADGT 242 (459)
T ss_pred hccCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeE--------EEeccccceeeEEEccCCCccceeeeccCCc
Confidence 35888999999999999999999999999999988765443 67789999999999996 668999999999
Q ss_pred EEEEEccCCeeeEEeccccccCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeeCCccceeEEEEcCCCCEEEEE
Q 010362 287 IKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTA 366 (512)
Q Consensus 287 i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 366 (512)
+++|++.+...+..+. +|...|..++|+|+|++|++++.|.+-++||++++..+....+|...|.+++|.|||..+++|
T Consensus 243 vklw~~~~e~~l~~l~-gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tG 321 (459)
T KOG0272|consen 243 VKLWKLSQETPLQDLE-GHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATG 321 (459)
T ss_pred eeeeccCCCcchhhhh-cchhhheeeeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeecc
Confidence 9999999989999997 899999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCcEEEEeCCCCceeeecCCCCCCCCCCceeEEEEEcCCCCCeEEEEcCCCcEEEEecCCeEEEEeeCCcccCCcEEE
Q 010362 367 SSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQVVKSFSSGKREGGDFVA 446 (512)
Q Consensus 367 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (512)
+.|..-+|||+++++++..+. +|..+|.++.|+|++ ..+++|+.|+++++||++.... ......|..-|+.
T Consensus 322 GlD~~~RvWDlRtgr~im~L~------gH~k~I~~V~fsPNG-y~lATgs~Dnt~kVWDLR~r~~--ly~ipAH~nlVS~ 392 (459)
T KOG0272|consen 322 GLDSLGRVWDLRTGRCIMFLA------GHIKEILSVAFSPNG-YHLATGSSDNTCKVWDLRMRSE--LYTIPAHSNLVSQ 392 (459)
T ss_pred CccchhheeecccCcEEEEec------ccccceeeEeECCCc-eEEeecCCCCcEEEeeeccccc--ceecccccchhhh
Confidence 999999999999999998876 688999999999998 8999999999999999996544 3333445677899
Q ss_pred EEECC-CCCEEEEEeCCCeEEEEEcCCCeeEEeccccCCCeEEEEEcCCCCeEEEEECCCeEEEecC
Q 010362 447 ACVSP-KGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPHRNLLATYGEDCTMKLWKP 512 (512)
Q Consensus 447 ~~~s~-~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~~~dg~i~iW~~ 512 (512)
++|+| .|.+|++++.|+++++|...+..+++.+.||.+.|.++..+|++.+++|++.|.++++|.|
T Consensus 393 Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~~ 459 (459)
T KOG0272|consen 393 VKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWRP 459 (459)
T ss_pred eEecccCCeEEEEcccCcceeeecCCCcccchhhcCCccceEEEEeccCCceEEEeccCceeeeccC
Confidence 99998 7999999999999999999999999999999999999999999999999999999999986
No 6
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=6.2e-50 Score=343.15 Aligned_cols=311 Identities=27% Similarity=0.458 Sum_probs=278.5
Q ss_pred eeeeccCcccccccccccCccccceEEEecCcCceEEEEECCCCCEEEEEeCCCeEEEEEcCCCeeeccccccccceeec
Q 010362 182 QFDLFRGTAAMKQDVEDMYPTTLSHTIKFGTKSHAECARFSPDGQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMM 261 (512)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 261 (512)
...++.|..+.....||.....+.++.+ +|...|.|++|+|||+.||+|+.||+|++||..+|+... ..+.+
T Consensus 127 g~~l~tGsGD~TvR~WD~~TeTp~~t~K-gH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g-------~~l~g 198 (480)
T KOG0271|consen 127 GSRLVTGSGDTTVRLWDLDTETPLFTCK-GHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIG-------RALRG 198 (480)
T ss_pred CceEEecCCCceEEeeccCCCCcceeec-CCccEEEEEEECCCcchhhccccCCeEEEecCCCCCccc-------ccccC
Confidence 3456677777888999999999999998 999999999999999999999999999999999887543 46778
Q ss_pred cCcceeEEEEcC-----CCCeEEEEeCCCeEEEEEccCCeeeEEeccccccCeEEEEEecCCCEEEEEeCCCcEEEEeCC
Q 010362 262 HDETVLCIEFSR-----DSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLK 336 (512)
Q Consensus 262 h~~~v~~l~~s~-----~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~i~d~~ 336 (512)
|...|++++|.| ..++||+++.||+|+|||+..+.++..+. +|+.+|+|+.|--+| ++++|+.|++|++|+..
T Consensus 199 H~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~ls-gHT~~VTCvrwGG~g-liySgS~DrtIkvw~a~ 276 (480)
T KOG0271|consen 199 HKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLS-GHTASVTCVRWGGEG-LIYSGSQDRTIKVWRAL 276 (480)
T ss_pred cccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEec-cCccceEEEEEcCCc-eEEecCCCceEEEEEcc
Confidence 999999999987 56799999999999999999999999987 999999999998554 89999999999999999
Q ss_pred CCceeEEeeCCccceeEEEEc-----------CC-------------------------CCEEEEEeCCCcEEEEeCCCC
Q 010362 337 SGKLLKEFRGHSSYVNDAIFT-----------ND-------------------------GSRVVTASSDCTVKVWDLKST 380 (512)
Q Consensus 337 ~~~~~~~~~~~~~~v~~~~~~-----------~~-------------------------~~~l~~~~~dg~i~iwd~~~~ 380 (512)
.|.+.+.+++|...|+.++.+ |. +..+++|+.|.++.+|+....
T Consensus 277 dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~ 356 (480)
T KOG0271|consen 277 DGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKS 356 (480)
T ss_pred chhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEeccccc
Confidence 999999999999999999977 22 235999999999999987644
Q ss_pred ceeeecCCCCCCCCCCceeEEEEEcCCCCCeEEEEcCCCcEEEEecC-CeEEEEeeCCcccCCcEEEEEECCCCCEEEEE
Q 010362 381 DCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQ-GQVVKSFSSGKREGGDFVAACVSPKGEWIYCV 459 (512)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g 459 (512)
+ ++.....+|..-|+.+.|+|++ .++++++.|..|++|+.+ |+.+..+.. |-..+..++|+.|.++|++|
T Consensus 357 k-----kpi~rmtgHq~lVn~V~fSPd~-r~IASaSFDkSVkLW~g~tGk~lasfRG---Hv~~VYqvawsaDsRLlVS~ 427 (480)
T KOG0271|consen 357 K-----KPITRMTGHQALVNHVSFSPDG-RYIASASFDKSVKLWDGRTGKFLASFRG---HVAAVYQVAWSADSRLLVSG 427 (480)
T ss_pred c-----cchhhhhchhhheeeEEECCCc-cEEEEeecccceeeeeCCCcchhhhhhh---ccceeEEEEeccCccEEEEc
Confidence 3 2333445889999999999998 999999999999999998 555555554 34679999999999999999
Q ss_pred eCCCeEEEEEcCCCeeEEeccccCCCeEEEEEcCCCCeEEEEECCCeEEEec
Q 010362 460 GEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPHRNLLATYGEDCTMKLWK 511 (512)
Q Consensus 460 ~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~~~dg~i~iW~ 511 (512)
+.|.++++|++++.++...+.+|.+.|.++.|+|||..+++|+.|..+++|.
T Consensus 428 SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 428 SKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred CCCceEEEEEeeeeeecccCCCCCceEEEEEecCCCceeecCCCceEEEeec
Confidence 9999999999999999999999999999999999999999999999999996
No 7
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=2.5e-46 Score=310.21 Aligned_cols=289 Identities=23% Similarity=0.384 Sum_probs=260.9
Q ss_pred eEEEecCcCceEEEEECCCCCEEEEEeCCCeEEEEEcCCCeeeccccccccceeeccCcceeEEEEcCCCCeEEEEeCCC
Q 010362 206 HTIKFGTKSHAECARFSPDGQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQDG 285 (512)
Q Consensus 206 ~~~~~~h~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg 285 (512)
++++ ||.+.|.++.|++|.++++++|.||.+.|||.-+......++. ....|..++|+|.|+++|.|+-|+
T Consensus 49 r~Lk-GH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl--------~s~WVMtCA~sPSg~~VAcGGLdN 119 (343)
T KOG0286|consen 49 RTLK-GHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPL--------PSSWVMTCAYSPSGNFVACGGLDN 119 (343)
T ss_pred EEec-ccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEec--------CceeEEEEEECCCCCeEEecCcCc
Confidence 4555 9999999999999999999999999999999888766655443 678899999999999999999999
Q ss_pred eEEEEEccCC--e---eeEEeccccccCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeeCCccceeEEEEcC-C
Q 010362 286 KIKVWRIRSG--Q---CLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTN-D 359 (512)
Q Consensus 286 ~i~vwd~~~~--~---~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~-~ 359 (512)
...||++.+. + .+.+...+|.+.+.++.|.+| ..|++++.|.+..+||+++++.+..|.+|.+.|.++.++| +
T Consensus 120 ~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD-~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~ 198 (343)
T KOG0286|consen 120 KCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDD-NHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSD 198 (343)
T ss_pred eeEEEecccccccccceeeeeecCccceeEEEEEcCC-CceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCC
Confidence 9999999855 2 233333499999999999875 5789999999999999999999999999999999999999 9
Q ss_pred CCEEEEEeCCCcEEEEeCCCCceeeecCCCCCCCCCCceeEEEEEcCCCCCeEEEEcCCCcEEEEecCCeEEEEeeCCcc
Q 010362 360 GSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQVVKSFSSGKR 439 (512)
Q Consensus 360 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~ 439 (512)
++.+++|+.|+..++||+|.+.+.++|. +|+..|+++.|+|++ .-+++|+.|+..++||++.........+..
T Consensus 199 ~ntFvSg~cD~~aklWD~R~~~c~qtF~------ghesDINsv~ffP~G-~afatGSDD~tcRlyDlRaD~~~a~ys~~~ 271 (343)
T KOG0286|consen 199 GNTFVSGGCDKSAKLWDVRSGQCVQTFE------GHESDINSVRFFPSG-DAFATGSDDATCRLYDLRADQELAVYSHDS 271 (343)
T ss_pred CCeEEecccccceeeeeccCcceeEeec------ccccccceEEEccCC-CeeeecCCCceeEEEeecCCcEEeeeccCc
Confidence 9999999999999999999999999987 788999999999998 899999999999999999543333344445
Q ss_pred cCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCeeEEeccccCCCeEEEEEcCCCCeEEEEECCCeEEEec
Q 010362 440 EGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPHRNLLATYGEDCTMKLWK 511 (512)
Q Consensus 440 ~~~~~~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~~~dg~i~iW~ 511 (512)
...++++++||..|++|++|..|.++.+||.-.++.+..+.+|.+.|+++..+|||..++|||.|.++|||.
T Consensus 272 ~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 272 IICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred ccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence 567899999999999999999999999999999999999999999999999999999999999999999994
No 8
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.8e-42 Score=295.75 Aligned_cols=283 Identities=25% Similarity=0.436 Sum_probs=258.1
Q ss_pred cCcCceEEEEECCCCCEEEEEeCCCeEEEEEcCCCeeeccccccccceeeccCcceeEEEEcCCCCeEEEEeCCCeEEEE
Q 010362 211 GTKSHAECARFSPDGQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQDGKIKVW 290 (512)
Q Consensus 211 ~h~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~vw 290 (512)
+|..+|+.+-|+|+-..+++++.|++|++||..++++.. .++||...|..++|+..|+++++|+.|-.+++|
T Consensus 106 g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~--------~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LW 177 (406)
T KOG0295|consen 106 GHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELER--------SLRGHTDSVFDISFDASGKYLATCSSDLSAKLW 177 (406)
T ss_pred ccccceeeeeeccCceEEEEecCCceEEEEEccchhhhh--------hhhccccceeEEEEecCccEEEecCCccchhhe
Confidence 899999999999999999999999999999999998755 456799999999999999999999999999999
Q ss_pred EccC-CeeeEEeccccccCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeeCCccceeEEEEcCCCCEEEEEeCC
Q 010362 291 RIRS-GQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSD 369 (512)
Q Consensus 291 d~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 369 (512)
|..+ .++++... +|...|.+++|-|.|.++++++.|.+|+.|++.++-++.++.+|...|..+..+.||..+++++.|
T Consensus 178 d~~~~~~c~ks~~-gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~d 256 (406)
T KOG0295|consen 178 DFDTFFRCIKSLI-GHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSND 256 (406)
T ss_pred eHHHHHHHHHHhc-CcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCCC
Confidence 9987 45556555 899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEeCCCCceeeecCCCCCCCCCCceeEEEEEcCC--------------CCCeEEEEcCCCcEEEEecC-CeEEEEe
Q 010362 370 CTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPK--------------NPDHIVVCNKTSSIYIMTLQ-GQVVKSF 434 (512)
Q Consensus 370 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--------------~~~~l~~~~~~~~i~~~~~~-~~~~~~~ 434 (512)
.++++|-+.++.+...+. .|..++.+++|.|. +..++.+++.|+.|++||+. +..+..+
T Consensus 257 qtl~vW~~~t~~~k~~lR------~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL 330 (406)
T KOG0295|consen 257 QTLRVWVVATKQCKAELR------EHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTL 330 (406)
T ss_pred ceEEEEEeccchhhhhhh------ccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEE
Confidence 999999999887665554 67788888888764 22589999999999999999 6566666
Q ss_pred eCCcccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCeeEEeccccCCCeEEEEEcCCCCeEEEEECCCeEEEec
Q 010362 435 SSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPHRNLLATYGEDCTMKLWK 511 (512)
Q Consensus 435 ~~~~~~~~~~~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~~~dg~i~iW~ 511 (512)
.. +...|..++|+|.|+||+++.+|+++++||++++++.+++..|..-|+++.|+.+..+++||+-|.++++|.
T Consensus 331 ~g---hdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwE 404 (406)
T KOG0295|consen 331 VG---HDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 404 (406)
T ss_pred ec---ccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCCCCceEEeccccceeeeee
Confidence 55 456799999999999999999999999999999999999999999999999999999999999999999996
No 9
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=5.9e-43 Score=309.42 Aligned_cols=299 Identities=24% Similarity=0.410 Sum_probs=262.0
Q ss_pred ccccCccccceEEEecCcCceEEEEECC-CCCEEEEEeCCCeEEEEEcCC-CeeeccccccccceeeccCcceeEEEEcC
Q 010362 196 VEDMYPTTLSHTIKFGTKSHAECARFSP-DGQFLVSCSFDGFIEVWDYLS-GKLKKDLQYQADETFMMHDETVLCIEFSR 273 (512)
Q Consensus 196 ~~~~~~~~~~~~~~~~h~~~v~~~~~s~-~~~~l~sg~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~h~~~v~~l~~s~ 273 (512)
.....|....+++. ||+..|+++.|.| .+.+|++|+.|+.|+||++-. ++++ +++.+|..+|..++|++
T Consensus 198 ~rc~~Pkk~~~~~~-gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~l--------rtf~gH~k~Vrd~~~s~ 268 (503)
T KOG0282|consen 198 ERCYLPKKLSHNLS-GHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCL--------RTFKGHRKPVRDASFNN 268 (503)
T ss_pred ceeeccHhheeecc-CCccccchhhhccceeeEEEecCCCceEEEEEEecCccee--------hhhhcchhhhhhhhccc
Confidence 45566888888887 9999999999999 899999999999999999866 4444 46778999999999999
Q ss_pred CCCeEEEEeCCCeEEEEEccCCeeeEEeccccccCeEEEEEecCC-CEEEEEeCCCcEEEEeCCCCceeEEeeCCcccee
Q 010362 274 DSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDG-SQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVN 352 (512)
Q Consensus 274 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~ 352 (512)
+|..+++++.|+.|++||+++|+++.++. ....+.|+.|+|++ +.+++|+.|+.|+.||+++++.+.++..|-+.|.
T Consensus 269 ~g~~fLS~sfD~~lKlwDtETG~~~~~f~--~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~ 346 (503)
T KOG0282|consen 269 CGTSFLSASFDRFLKLWDTETGQVLSRFH--LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAIL 346 (503)
T ss_pred cCCeeeeeecceeeeeeccccceEEEEEe--cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhhee
Confidence 99999999999999999999999999986 56789999999988 8899999999999999999999999999999999
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeecCCCCCCCCCCceeEEEEEcCCCCCeEEEEcCCCcEEEEecCCe---
Q 010362 353 DAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQ--- 429 (512)
Q Consensus 353 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~--- 429 (512)
.+.|-++|.++++++.|++++||+.+....+..+..+ ......++..+|.+ ..++.-+.+..|.++.....
T Consensus 347 ~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~-----~~hsmP~~~~~P~~-~~~~aQs~dN~i~ifs~~~~~r~ 420 (503)
T KOG0282|consen 347 DITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADP-----EMHTMPCLTLHPNG-KWFAAQSMDNYIAIFSTVPPFRL 420 (503)
T ss_pred eeEEccCCceEeeeccCccEEEEEcCCCccchhhcch-----hhccCcceecCCCC-CeehhhccCceEEEEeccccccc
Confidence 9999999999999999999999999987665554432 23456788889988 89999999999999987622
Q ss_pred EEEEeeCCcccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCeeEEeccccCCCeEEEEEcCC-CCeEEEEECCCeEE
Q 010362 430 VVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPH-RNLLATYGEDCTMK 508 (512)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~p~-~~~l~s~~~dg~i~ 508 (512)
..+....+....+.-..+.|||||.+|++|+.||.+++||.++-+++..+++|.+++..+.|+|. ...+||||.||.|+
T Consensus 421 nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ik 500 (503)
T KOG0282|consen 421 NKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIK 500 (503)
T ss_pred CHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCCCcceeEecccCceeE
Confidence 22222333334566778999999999999999999999999999999999999999999999994 56899999999999
Q ss_pred Eec
Q 010362 509 LWK 511 (512)
Q Consensus 509 iW~ 511 (512)
+|+
T Consensus 501 iwd 503 (503)
T KOG0282|consen 501 IWD 503 (503)
T ss_pred ecC
Confidence 997
No 10
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=1.5e-40 Score=311.68 Aligned_cols=260 Identities=28% Similarity=0.450 Sum_probs=231.2
Q ss_pred CccccceEEEecCcCceEEEEECCCCCEEEEEeCCCeEEEEEcCCCeee--------ccc---------------ccccc
Q 010362 200 YPTTLSHTIKFGTKSHAECARFSPDGQFLVSCSFDGFIEVWDYLSGKLK--------KDL---------------QYQAD 256 (512)
Q Consensus 200 ~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~--------~~~---------------~~~~~ 256 (512)
.|..+.+++. .....++|+.|++|+..||.|..|..|++|.+...++. ..+ .....
T Consensus 366 lpSic~YT~~-nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~ 444 (707)
T KOG0263|consen 366 LPSICMYTFH-NTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTS 444 (707)
T ss_pred CCcEEEEEEE-EcCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCcee
Confidence 4555556665 44556999999999999999999999999998743211 111 11223
Q ss_pred ceeeccCcceeEEEEcCCCCeEEEEeCCCeEEEEEccCCeeeEEeccccccCeEEEEEecCCCEEEEEeCCCcEEEEeCC
Q 010362 257 ETFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLK 336 (512)
Q Consensus 257 ~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~i~d~~ 336 (512)
.++.||.++|..+.|+|+.++|++||.|+++|+|.+.+..++..+. +|..+|.++.|+|-|-+||+++.|++-++|...
T Consensus 445 ~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~-GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d 523 (707)
T KOG0263|consen 445 RTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYK-GHLAPVWDVQFAPRGYYFATASHDQTARLWSTD 523 (707)
T ss_pred EEeecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEec-CCCcceeeEEecCCceEEEecCCCceeeeeecc
Confidence 4688999999999999999999999999999999999999999997 999999999999999999999999999999999
Q ss_pred CCceeEEeeCCccceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeecCCCCCCCCCCceeEEEEEcCCCCCeEEEEc
Q 010362 337 SGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCN 416 (512)
Q Consensus 337 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~ 416 (512)
...+.+.+.+|.+.|.|+.|+|+.+++++|+.|.++++||+.+|..++.|.
T Consensus 524 ~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~----------------------------- 574 (707)
T KOG0263|consen 524 HNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFT----------------------------- 574 (707)
T ss_pred cCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEec-----------------------------
Confidence 999999999999999999999999999999999999999999887554442
Q ss_pred CCCcEEEEecCCeEEEEeeCCcccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCeeEEeccccCCCeEEEEEcCCCC
Q 010362 417 KTSSIYIMTLQGQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPHRN 496 (512)
Q Consensus 417 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~p~~~ 496 (512)
.|.++|.++++||+|++|++|+.||.|.+||+.+++++..+.+|.+.|.++.|+.+|.
T Consensus 575 ----------------------GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~ 632 (707)
T KOG0263|consen 575 ----------------------GHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGN 632 (707)
T ss_pred ----------------------CCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhhcccCceeEEEEecCCC
Confidence 1456789999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEECCCeEEEecC
Q 010362 497 LLATYGEDCTMKLWKP 512 (512)
Q Consensus 497 ~l~s~~~dg~i~iW~~ 512 (512)
.||+||.|.+|++||.
T Consensus 633 vLasgg~DnsV~lWD~ 648 (707)
T KOG0263|consen 633 VLASGGADNSVRLWDL 648 (707)
T ss_pred EEEecCCCCeEEEEEc
Confidence 9999999999999984
No 11
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=3.7e-40 Score=271.99 Aligned_cols=285 Identities=24% Similarity=0.351 Sum_probs=243.9
Q ss_pred ecCcCceEEEEECCC-CCEEEEEeCCCeEEEEEcCCCeeeccccccccceeeccCcceeEEEEcCCCCeEEEEeCCCeEE
Q 010362 210 FGTKSHAECARFSPD-GQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQDGKIK 288 (512)
Q Consensus 210 ~~h~~~v~~~~~s~~-~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~ 288 (512)
.+|++.|+.++..+. .+.+++++.|.++.+|++....... ..+.+.+.||...|..++.++||++.++++.|++++
T Consensus 12 ~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~---G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lr 88 (315)
T KOG0279|consen 12 EGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKY---GVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLR 88 (315)
T ss_pred cCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCcccc---CceeeeeeccceEecceEEccCCceEEeccccceEE
Confidence 499999999999986 6788999999999999987653221 234567889999999999999999999999999999
Q ss_pred EEEccCCeeeEEeccccccCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeeCC--ccceeEEEEcCC--CCEEE
Q 010362 289 VWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRGH--SSYVNDAIFTND--GSRVV 364 (512)
Q Consensus 289 vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~--~~~v~~~~~~~~--~~~l~ 364 (512)
+||+.+|+..+.+. +|...|.+++|+||.+.+++|+.|.+|++|++. +.+..++..+ ...|+|+.|+|+ ..+|+
T Consensus 89 lWDl~~g~~t~~f~-GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~-g~ck~t~~~~~~~~WVscvrfsP~~~~p~Iv 166 (315)
T KOG0279|consen 89 LWDLATGESTRRFV-GHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTL-GVCKYTIHEDSHREWVSCVRFSPNESNPIIV 166 (315)
T ss_pred EEEecCCcEEEEEE-ecCCceEEEEecCCCceeecCCCcceeeeeeec-ccEEEEEecCCCcCcEEEEEEcCCCCCcEEE
Confidence 99999999999997 999999999999999999999999999999985 5555555543 789999999997 67999
Q ss_pred EEeCCCcEEEEeCCCCceeeecCCCCCCCCCCceeEEEEEcCCCCCeEEEEcCCCcEEEEecC-CeEEEEeeCCcccCCc
Q 010362 365 TASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQ-GQVVKSFSSGKREGGD 443 (512)
Q Consensus 365 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~ 443 (512)
+++.|+++++||+++.+....+. +|...++.+.++|++ .+.++|+.||.+.+||++ ++.+..+.. ...
T Consensus 167 s~s~DktvKvWnl~~~~l~~~~~------gh~~~v~t~~vSpDG-slcasGgkdg~~~LwdL~~~k~lysl~a----~~~ 235 (315)
T KOG0279|consen 167 SASWDKTVKVWNLRNCQLRTTFI------GHSGYVNTVTVSPDG-SLCASGGKDGEAMLWDLNEGKNLYSLEA----FDI 235 (315)
T ss_pred EccCCceEEEEccCCcchhhccc------cccccEEEEEECCCC-CEEecCCCCceEEEEEccCCceeEeccC----CCe
Confidence 99999999999999877665554 788999999999999 899999999999999999 444444332 456
Q ss_pred EEEEEECCCCCEEEEEeCCCeEEEEEcCCCeeEEeccc----c-----CCCeEEEEEcCCCCeEEEEECCCeEEEec
Q 010362 444 FVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKV----H-----EKDVIGVTHHPHRNLLATYGEDCTMKLWK 511 (512)
Q Consensus 444 ~~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~----h-----~~~v~~v~~~p~~~~l~s~~~dg~i~iW~ 511 (512)
|.+++|+|+..+|+.+... .|+|||+.++..+..++. . .-...+++|++||..|.+|-.|+.|++|.
T Consensus 236 v~sl~fspnrywL~~at~~-sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~q 311 (315)
T KOG0279|consen 236 VNSLCFSPNRYWLCAATAT-SIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQ 311 (315)
T ss_pred EeeEEecCCceeEeeccCC-ceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEE
Confidence 8999999999888877654 499999999988776642 1 12345789999999999999999999996
No 12
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=1.4e-40 Score=269.85 Aligned_cols=270 Identities=23% Similarity=0.430 Sum_probs=239.8
Q ss_pred CEEEEEeCCCeEEEEEcCCCeeeccccccccceeeccCcceeEEEEcCCCCeEEEEeCCCeEEEEEccCCe--eeEEecc
Q 010362 226 QFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQ--CLRRLER 303 (512)
Q Consensus 226 ~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~--~~~~~~~ 303 (512)
-+|+++|.|.+|++|...+|.+.++++. ..+.|+.+...|+++.||+++. ..|++||+.++. ++.++.
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rTiqh--------~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~Pv~t~e- 80 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRTIQH--------PDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPNPVATFE- 80 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEEEec--------CccceeeEEEcCCcchhhhccC-CeeEEEEccCCCCCceeEEe-
Confidence 4799999999999999999999887763 5678999999999999999874 589999998875 577887
Q ss_pred ccccCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeeCCccceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCcee
Q 010362 304 AHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCL 383 (512)
Q Consensus 304 ~~~~~i~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 383 (512)
+|...|+++.|..+|+.+++|+.||+++|||++...+.+.++ |.++|+++..+|+...|++|..+|.|++||+....+.
T Consensus 81 ~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~-~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~ 159 (311)
T KOG0315|consen 81 GHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCT 159 (311)
T ss_pred ccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccchhcc-CCCCcceEEecCCcceEEeecCCCcEEEEEccCCccc
Confidence 899999999999999999999999999999999977766666 7799999999999999999999999999999988776
Q ss_pred eecCCCCCCCCCCceeEEEEEcCCCCCeEEEEcCCCcEEEEecCCe----EEEEeeCCcccCCcEEEEEECCCCCEEEEE
Q 010362 384 QTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQ----VVKSFSSGKREGGDFVAACVSPKGEWIYCV 459 (512)
Q Consensus 384 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~----~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g 459 (512)
..+.+. ...++.++.+.|++ .+++.+...|..++|++-+. .+........+.+.+..+.+|||+++|+++
T Consensus 160 ~~liPe-----~~~~i~sl~v~~dg-sml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ 233 (311)
T KOG0315|consen 160 HELIPE-----DDTSIQSLTVMPDG-SMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATC 233 (311)
T ss_pred cccCCC-----CCcceeeEEEcCCC-cEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEee
Confidence 666543 35789999999998 89999999999999998742 334444455677889999999999999999
Q ss_pred eCCCeEEEEEcCCC-eeEEeccccCCCeEEEEEcCCCCeEEEEECCCeEEEecC
Q 010362 460 GEDRNLYCFSHQSG-KLEHLMKVHEKDVIGVTHHPHRNLLATYGEDCTMKLWKP 512 (512)
Q Consensus 460 ~~dg~i~iwd~~~~-~~~~~~~~h~~~v~~v~~~p~~~~l~s~~~dg~i~iW~~ 512 (512)
+.|.+++||+..+- +....+.+|..-+...+||.|+.+|+||+.|+.+++|++
T Consensus 234 ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~ 287 (311)
T KOG0315|consen 234 SSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDL 287 (311)
T ss_pred cCCceEEEEecCCceeeEEEeecCCceEEeeeeccCccEEEecCCCCceeeccc
Confidence 99999999999987 677788999999999999999999999999999999985
No 13
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=3.2e-42 Score=299.64 Aligned_cols=267 Identities=25% Similarity=0.371 Sum_probs=240.6
Q ss_pred eeccCcccccccccccCccccceEEEecCcCceEEEEECCC--CCEEEEEeCCCeEEEEEcCCCeeeccccccccceeec
Q 010362 184 DLFRGTAAMKQDVEDMYPTTLSHTIKFGTKSHAECARFSPD--GQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMM 261 (512)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~--~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 261 (512)
.+..+...+...+|........+++. ||.+.|.++.|+|. +..+|||+.||++++|++++...+. .+.+
T Consensus 189 ~laT~swsG~~kvW~~~~~~~~~~l~-gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~--------~l~g 259 (459)
T KOG0272|consen 189 HLATGSWSGLVKVWSVPQCNLLQTLR-GHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQ--------DLEG 259 (459)
T ss_pred eEEEeecCCceeEeecCCcceeEEEe-ccccceeeEEEccCCCccceeeeccCCceeeeccCCCcchh--------hhhc
Confidence 34555666677888888888888887 99999999999996 6789999999999999998875554 4567
Q ss_pred cCcceeEEEEcCCCCeEEEEeCCCeEEEEEccCCeeeEEeccccccCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCcee
Q 010362 262 HDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLL 341 (512)
Q Consensus 262 h~~~v~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~ 341 (512)
|...|..++|+|+|++|+|++.|.+-++||+.++..+.... +|...|.+++|+|||..+++|+.|..-++||+++++++
T Consensus 260 H~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QE-GHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~i 338 (459)
T KOG0272|consen 260 HLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQE-GHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCI 338 (459)
T ss_pred chhhheeeeecCCCceeeecccccchhhcccccchhhHhhc-ccccccceeEecCCCceeeccCccchhheeecccCcEE
Confidence 99999999999999999999999999999999998877776 99999999999999999999999999999999999999
Q ss_pred EEeeCCccceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeecCCCCCCCCCCceeEEEEEcCCCCCeEEEEcCCCcE
Q 010362 342 KEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSI 421 (512)
Q Consensus 342 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i 421 (512)
..+.+|..+|.++.|+|+|-.++||+.|++++|||++......+++ +|..-|+.+.+.|....++++++.|+++
T Consensus 339 m~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ip------AH~nlVS~Vk~~p~~g~fL~TasyD~t~ 412 (459)
T KOG0272|consen 339 MFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIP------AHSNLVSQVKYSPQEGYFLVTASYDNTV 412 (459)
T ss_pred EEecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecc------cccchhhheEecccCCeEEEEcccCcce
Confidence 9999999999999999999999999999999999999988766665 6788999999999888999999999999
Q ss_pred EEEecCC-eEEEEeeCCcccCCcEEEEEECCCCCEEEEEeCCCeEEEEE
Q 010362 422 YIMTLQG-QVVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFS 469 (512)
Q Consensus 422 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~dg~i~iwd 469 (512)
++|...+ .+++.+.. |.+.|.++.+++|+.++++++.|.++++|.
T Consensus 413 kiWs~~~~~~~ksLaG---He~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 413 KIWSTRTWSPLKSLAG---HEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred eeecCCCcccchhhcC---CccceEEEEeccCCceEEEeccCceeeecc
Confidence 9999884 45555444 467799999999999999999999999995
No 14
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=8.7e-41 Score=278.46 Aligned_cols=284 Identities=23% Similarity=0.343 Sum_probs=248.1
Q ss_pred ecCcCceEEEEECCCCCEEEEEeCCCeEEEEEcCCCeeeccccccccceeeccCcceeEEEEcCCCCeEEEEeCCCeEEE
Q 010362 210 FGTKSHAECARFSPDGQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQDGKIKV 289 (512)
Q Consensus 210 ~~h~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~v 289 (512)
.||++.|.++.|+|+|.+||+|+.|..|.+|++..... ....+++|.+.|..+.|.+|++.+++++.|.+++.
T Consensus 44 ~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdce-------N~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~ 116 (338)
T KOG0265|consen 44 PGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCE-------NFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRG 116 (338)
T ss_pred CCCcceEEEEEECCCCCeEeecCCcceEEEEecccccc-------ceeeeccccceeEeeeeccCCCEEEEecCCceEEE
Confidence 49999999999999999999999999999999654321 12245689999999999999999999999999999
Q ss_pred EEccCCeeeEEeccccccCeEEEEEecCC-CEEEEEeCCCcEEEEeCCCCceeEEeeCCccceeEEEEcCCCCEEEEEeC
Q 010362 290 WRIRSGQCLRRLERAHSEGVTSLVFSRDG-SQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASS 368 (512)
Q Consensus 290 wd~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 368 (512)
||+++|+.++++. .|..-++++.-+.-| .++.+|+.|+++++||+++...++++. ....++++.|...+..+++|+-
T Consensus 117 wD~~tG~~~rk~k-~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~-~kyqltAv~f~d~s~qv~sggI 194 (338)
T KOG0265|consen 117 WDAETGKRIRKHK-GHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE-NKYQLTAVGFKDTSDQVISGGI 194 (338)
T ss_pred Eecccceeeehhc-cccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccc-cceeEEEEEecccccceeeccc
Confidence 9999999999997 899999999855444 456688899999999999998888875 3456999999999999999999
Q ss_pred CCcEEEEeCCCCceeeecCCCCCCCCCCceeEEEEEcCCCCCeEEEEcCCCcEEEEecC----CeE-EEEeeCCc-ccCC
Q 010362 369 DCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQ----GQV-VKSFSSGK-REGG 442 (512)
Q Consensus 369 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~~~~~----~~~-~~~~~~~~-~~~~ 442 (512)
|+.|++||++.+.....+. +|..+|+.+..+|.+ ..+.+-+.|..+++||++ +.. +..+..+. ....
T Consensus 195 dn~ikvWd~r~~d~~~~ls------Gh~DtIt~lsls~~g-s~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfek 267 (338)
T KOG0265|consen 195 DNDIKVWDLRKNDGLYTLS------GHADTITGLSLSRYG-SFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEK 267 (338)
T ss_pred cCceeeeccccCcceEEee------cccCceeeEEeccCC-CccccccccceEEEEEecccCCCCceEEEeecchhhhhh
Confidence 9999999999988877765 788999999999998 899999999999999997 333 33333322 1233
Q ss_pred cEEEEEECCCCCEEEEEeCCCeEEEEEcCCCeeEEeccccCCCeEEEEEcCCCCeEEEEECCCeEEE
Q 010362 443 DFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPHRNLLATYGEDCTMKL 509 (512)
Q Consensus 443 ~~~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~~~dg~i~i 509 (512)
....++|+|+++++.+|+.|..+++||......+..+.+|.+.|++++|+|...+|.+++.|.+|.+
T Consensus 268 nlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i~l 334 (338)
T KOG0265|consen 268 NLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYL 334 (338)
T ss_pred hcceeeccCCCCccccccccceEEEeecccccEEEEcCCcceeEEEeeecCCCcEEEEeccCceeEe
Confidence 4568899999999999999999999999999999999999999999999999999999999999976
No 15
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=6.1e-40 Score=293.00 Aligned_cols=329 Identities=17% Similarity=0.295 Sum_probs=276.2
Q ss_pred cCCCCCCCeeeeccCcccccccccccCccccceEEEecCcCceEEEEECCCCCEEEEEeCCCeEEEEEcCCCeeeccccc
Q 010362 174 QGLLPPGTQFDLFRGTAAMKQDVEDMYPTTLSHTIKFGTKSHAECARFSPDGQFLVSCSFDGFIEVWDYLSGKLKKDLQY 253 (512)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~ 253 (512)
.|-+.+...|....+..+....+.+-.|.+...+.+ .|..-|.|+.|+|||.++|+++.||+|.+||-.+++....+..
T Consensus 152 s~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r-~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~ 230 (603)
T KOG0318|consen 152 SVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFR-EHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELED 230 (603)
T ss_pred eeeccCCCceEEEeccCCCeEEEeeCCCeeeeeccc-ccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecC
Confidence 345667778888888888888888889999988888 8888999999999999999999999999999999998877653
Q ss_pred cccceeeccCcceeEEEEcCCCCeEEEEeCCCeEEEEEccCCeeeEEeccccc--cCeEEEEEecCCCEEEEEeCCCcEE
Q 010362 254 QADETFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHS--EGVTSLVFSRDGSQILSTSFDSTAR 331 (512)
Q Consensus 254 ~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~l~~~~~dg~v~ 331 (512)
-.+|.+.|.+++|+||+..+++++.|.+++|||+.++++++++..+.. ..-..+.|. ...|++.+.+|+|.
T Consensus 231 -----~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWq--kd~lItVSl~G~in 303 (603)
T KOG0318|consen 231 -----SDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQ--KDHLITVSLSGTIN 303 (603)
T ss_pred -----CCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEe--CCeEEEEEcCcEEE
Confidence 235999999999999999999999999999999999999999874443 334455565 56899999999999
Q ss_pred EEeCCCCceeEEeeCCccceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeec-----------CCCC----------
Q 010362 332 IHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTF-----------KPPP---------- 390 (512)
Q Consensus 332 i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-----------~~~~---------- 390 (512)
+++...+.....+.+|...|+++..+|++++|++|+.||.|.-||..++..-... ....
T Consensus 304 ~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~D 383 (603)
T KOG0318|consen 304 YLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWD 383 (603)
T ss_pred EecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecC
Confidence 9999999999999999999999999999999999999999999998765432110 0000
Q ss_pred -------------------CCC-----------------------------------CCCceeEEEEEcCCCCCeEEEEc
Q 010362 391 -------------------PLR-----------------------------------GGDASVNSVHLFPKNPDHIVVCN 416 (512)
Q Consensus 391 -------------------~~~-----------------------------------~~~~~i~~~~~~~~~~~~l~~~~ 416 (512)
.+. .......+++++|++ ..+++|+
T Consensus 384 d~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~-~~vaVGG 462 (603)
T KOG0318|consen 384 DTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDG-SEVAVGG 462 (603)
T ss_pred CeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCC-CEEEEec
Confidence 000 001234567777877 8999999
Q ss_pred CCCcEEEEecCCeEEEEeeCCcccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCeeEEe-ccccCCCeEEEEEcCCC
Q 010362 417 KTSSIYIMTLQGQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHL-MKVHEKDVIGVTHHPHR 495 (512)
Q Consensus 417 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~-~~~h~~~v~~v~~~p~~ 495 (512)
.|+.+++|.+.+...........+.++++++++|||+.||++|...+.+.+||+.+.+.... +..|+..|++++|+|+.
T Consensus 463 ~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n 542 (603)
T KOG0318|consen 463 QDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPNN 542 (603)
T ss_pred ccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeCCCc
Confidence 99999999999766555444455678899999999999999999999999999999887433 34599999999999999
Q ss_pred CeEEEEECCCeEEEec
Q 010362 496 NLLATYGEDCTMKLWK 511 (512)
Q Consensus 496 ~~l~s~~~dg~i~iW~ 511 (512)
.++||||-|..|.||.
T Consensus 543 ~~vATGSlDt~Viiys 558 (603)
T KOG0318|consen 543 KLVATGSLDTNVIIYS 558 (603)
T ss_pred eEEEeccccceEEEEE
Confidence 9999999999999996
No 16
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=1.6e-41 Score=293.93 Aligned_cols=295 Identities=23% Similarity=0.391 Sum_probs=253.1
Q ss_pred ccCccccceEEEecCcCceEEEEECCCCCEEEEEeCCCeEEEEEcCCCeeeccccccccceeeccCcceeEEEEcCCCCe
Q 010362 198 DMYPTTLSHTIKFGTKSHAECARFSPDGQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEM 277 (512)
Q Consensus 198 ~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~ 277 (512)
..++.+..++-...-+..|..+.|.|+|+.|++|+..|.+.+|+..+-. ....+..|..+|+++.|++++.+
T Consensus 81 ~~~~tKf~h~s~NKvkc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fn--------FEtilQaHDs~Vr~m~ws~~g~w 152 (464)
T KOG0284|consen 81 SAFTTKFVHTSSNKVKCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFN--------FETILQAHDSPVRTMKWSHNGTW 152 (464)
T ss_pred cccccceEeccccccccceeeEEEcCCCceeEeecccccEEEecCceee--------HHHHhhhhcccceeEEEccCCCE
Confidence 3445555555544566789999999999999999999999999963322 12244569999999999999999
Q ss_pred EEEEeCCCeEEEEEccCCeeeEEeccccccCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeeCCccceeEEEEc
Q 010362 278 LASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFT 357 (512)
Q Consensus 278 l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~ 357 (512)
+++|+.+|.|++|+.. ...++.+...|...|++++|+|+...|++++.||+|+|||....+....+.+|.-.|.+++|+
T Consensus 153 miSgD~gG~iKyWqpn-mnnVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWH 231 (464)
T KOG0284|consen 153 MISGDKGGMIKYWQPN-MNNVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWH 231 (464)
T ss_pred EEEcCCCceEEecccc-hhhhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccC
Confidence 9999999999999965 344555655666999999999999999999999999999999998888999999999999999
Q ss_pred CCCCEEEEEeCCCcEEEEeCCCCceeeecCCCCCCCCCCceeEEEEEcCCCCCeEEEEcCCCcEEEEecC-CeEEEEeeC
Q 010362 358 NDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQ-GQVVKSFSS 436 (512)
Q Consensus 358 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~~~~~-~~~~~~~~~ 436 (512)
|....+++++.|..|++||.+++.++.++. +|...|..+.|+|++ +++++++.|..++++|++ -+.+..+
T Consensus 232 P~kgLiasgskDnlVKlWDprSg~cl~tlh------~HKntVl~~~f~~n~-N~Llt~skD~~~kv~DiR~mkEl~~~-- 302 (464)
T KOG0284|consen 232 PTKGLIASGSKDNLVKLWDPRSGSCLATLH------GHKNTVLAVKFNPNG-NWLLTGSKDQSCKVFDIRTMKELFTY-- 302 (464)
T ss_pred CccceeEEccCCceeEeecCCCcchhhhhh------hccceEEEEEEcCCC-CeeEEccCCceEEEEehhHhHHHHHh--
Confidence 999999999999999999999999988875 678899999999999 999999999999999999 3333333
Q ss_pred CcccCCcEEEEEECC-CCCEEEEEeCCCeEEEEEcCCCeeEEec-cccCCCeEEEEEcCCCCeEEEEECCCeEEEec
Q 010362 437 GKREGGDFVAACVSP-KGEWIYCVGEDRNLYCFSHQSGKLEHLM-KVHEKDVIGVTHHPHRNLLATYGEDCTMKLWK 511 (512)
Q Consensus 437 ~~~~~~~~~~~~~s~-~g~~l~~g~~dg~i~iwd~~~~~~~~~~-~~h~~~v~~v~~~p~~~~l~s~~~dg~i~iW~ 511 (512)
..|...++++.|+| ...++.+|+.||.|..|.+...+++..+ .+|...|.+++|+|-|.+|++|+.|.++++|.
T Consensus 303 -r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~ 378 (464)
T KOG0284|consen 303 -RGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWT 378 (464)
T ss_pred -hcchhhheeeccccccccceeeccCCCceEEEeccccccccCCCcccccceeeeeccccceeEeecCCCcceeeec
Confidence 33566799999999 4667888999999999999866665554 57999999999999999999999999999994
No 17
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=4.1e-39 Score=261.42 Aligned_cols=295 Identities=18% Similarity=0.283 Sum_probs=258.4
Q ss_pred ccCcccccccccccCccccceEEEecCcCceEEEEECCCCCEEEEEeCCCeEEEEEcCCCeeeccccccccceeeccCcc
Q 010362 186 FRGTAAMKQDVEDMYPTTLSHTIKFGTKSHAECARFSPDGQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHDET 265 (512)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~ 265 (512)
+...-+.....|...++.+..+++ ...+.|..+...|+++.||+|+ ...|++||++++.. .+..++.+|...
T Consensus 14 vsA~YDhTIRfWqa~tG~C~rTiq-h~dsqVNrLeiTpdk~~LAaa~-~qhvRlyD~~S~np------~Pv~t~e~h~kN 85 (311)
T KOG0315|consen 14 VSAGYDHTIRFWQALTGICSRTIQ-HPDSQVNRLEITPDKKDLAAAG-NQHVRLYDLNSNNP------NPVATFEGHTKN 85 (311)
T ss_pred EeccCcceeeeeehhcCeEEEEEe-cCccceeeEEEcCCcchhhhcc-CCeeEEEEccCCCC------CceeEEeccCCc
Confidence 333344456789999999999998 7788999999999999999998 56899999998764 245578889999
Q ss_pred eeEEEEcCCCCeEEEEeCCCeEEEEEccCCeeeEEeccccccCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEee
Q 010362 266 VLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFR 345 (512)
Q Consensus 266 v~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~ 345 (512)
|+.+.|..+|+++++||+||+++|||++...+.+.+. +..+|+++..+|+...|++|..+|.|++||+.+..+...+.
T Consensus 86 VtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~--~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~li 163 (311)
T KOG0315|consen 86 VTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQ--HNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELI 163 (311)
T ss_pred eEEEEEeecCeEEEecCCCceEEEEeccCcccchhcc--CCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccC
Confidence 9999999999999999999999999999977777765 78999999999999999999999999999998886666554
Q ss_pred C-CccceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeecCCCCCCCCCCceeEEEEEcCCCCCeEEEEcCCCcEEEE
Q 010362 346 G-HSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIM 424 (512)
Q Consensus 346 ~-~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~~ 424 (512)
. ...+|.++...|||.+++.+...|..++|++-+......+.+...++.|.+.+....++|++ +++++++.|.++++|
T Consensus 164 Pe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~-k~lat~ssdktv~iw 242 (311)
T KOG0315|consen 164 PEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDV-KYLATCSSDKTVKIW 242 (311)
T ss_pred CCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCC-cEEEeecCCceEEEE
Confidence 3 45689999999999999999999999999999887777888888889999999999999998 999999999999999
Q ss_pred ecCCeEEEEeeCCcccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCeeEEeccccCCCeEEEEEc
Q 010362 425 TLQGQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHH 492 (512)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~ 492 (512)
+.++- .+.-.....+..-+..++||.||+||++|+.|+.+++|++..++.+..+.+|.....|++.+
T Consensus 243 n~~~~-~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~K~~vc~~ln 309 (311)
T KOG0315|consen 243 NTDDF-FKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQGHHKAAVCVALN 309 (311)
T ss_pred ecCCc-eeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccCceeeecCCcccccEEEEee
Confidence 99976 33333333345678999999999999999999999999999999999999999888887764
No 18
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=9e-39 Score=273.30 Aligned_cols=288 Identities=19% Similarity=0.339 Sum_probs=250.4
Q ss_pred cCcCceEEEEECCCCCEEEEEeCCCeEEEEEcCCCeeeccccccccceeeccCcceeEEEEcCCCCeEEEEeCCCeEEEE
Q 010362 211 GTKSHAECARFSPDGQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQDGKIKVW 290 (512)
Q Consensus 211 ~h~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~vw 290 (512)
.|++.|.+++.+|+.+++|||+.|....+|++.++.... .+.+|...|+++.|+.+|.+||||+.+|.|+||
T Consensus 62 ~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~--------eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~ 133 (399)
T KOG0296|consen 62 KHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAG--------ELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVF 133 (399)
T ss_pred hcCCceEEEEeCCCCceEEecCCCceEEEEEccCCccee--------EecCCCCceEEEEEccCceEEEecCCCccEEEE
Confidence 899999999999999999999999999999999998554 456799999999999999999999999999999
Q ss_pred EccCCeeeEEeccccccCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeeCCccceeEEEEcCCCCEEEEEeCCC
Q 010362 291 RIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDC 370 (512)
Q Consensus 291 d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 370 (512)
+..++.....+. ..-..+.-+.|+|.+..|++|+.||.+.+|.+.++...+.+.+|+.++++=.|.|+|+.++++..||
T Consensus 134 ~~stg~~~~~~~-~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dg 212 (399)
T KOG0296|consen 134 KVSTGGEQWKLD-QEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDG 212 (399)
T ss_pred EcccCceEEEee-cccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCc
Confidence 999999888885 4567899999999999999999999999999999888899999999999999999999999999999
Q ss_pred cEEEEeCCCCceeeecCCCCCCC---------------------------------------------CCCceeEEEEEc
Q 010362 371 TVKVWDLKSTDCLQTFKPPPPLR---------------------------------------------GGDASVNSVHLF 405 (512)
Q Consensus 371 ~i~iwd~~~~~~~~~~~~~~~~~---------------------------------------------~~~~~i~~~~~~ 405 (512)
+|++||+.++.+...+....... .+...+.++.+.
T Consensus 213 ti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~ 292 (399)
T KOG0296|consen 213 TIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESI 292 (399)
T ss_pred eEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhc
Confidence 99999999998877766211000 001112222222
Q ss_pred CCC--CCeEEEEcCCCcEEEEecCCeEEEEeeCCcccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCeeEEeccccC
Q 010362 406 PKN--PDHIVVCNKTSSIYIMTLQGQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHE 483 (512)
Q Consensus 406 ~~~--~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~ 483 (512)
|.. -.+.++|+-||+|.+||+....++....+ ...|+.+.|-+ ..+|++++.+|.|+.||.++|+++..+.+|.
T Consensus 293 ~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~h---e~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~ 368 (399)
T KOG0296|consen 293 PSSSKLPLAACGSVDGTIAIYDLAASTLRHICEH---EDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQLKFTYTGHQ 368 (399)
T ss_pred ccccccchhhcccccceEEEEecccchhheeccC---CCceEEEEEcC-cchheeeccCceEEeeeccccceEEEEecCc
Confidence 222 14678899999999999997776666554 34599999988 8899999999999999999999999999999
Q ss_pred CCeEEEEEcCCCCeEEEEECCCeEEEec
Q 010362 484 KDVIGVTHHPHRNLLATYGEDCTMKLWK 511 (512)
Q Consensus 484 ~~v~~v~~~p~~~~l~s~~~dg~i~iW~ 511 (512)
..|.+++.+|+.++++|+|.|++.+||+
T Consensus 369 ~~Il~f~ls~~~~~vvT~s~D~~a~VF~ 396 (399)
T KOG0296|consen 369 MGILDFALSPQKRLVVTVSDDNTALVFE 396 (399)
T ss_pred hheeEEEEcCCCcEEEEecCCCeEEEEe
Confidence 9999999999999999999999999986
No 19
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=5.9e-38 Score=257.90 Aligned_cols=282 Identities=24% Similarity=0.400 Sum_probs=234.6
Q ss_pred eEEEecCcCceEEEEECCC-CCEEEEEeCCCeEEEEEcCCCe---eeccccccccceeeccCcceeEEEEcCCCCeEEEE
Q 010362 206 HTIKFGTKSHAECARFSPD-GQFLVSCSFDGFIEVWDYLSGK---LKKDLQYQADETFMMHDETVLCIEFSRDSEMLASG 281 (512)
Q Consensus 206 ~~~~~~h~~~v~~~~~s~~-~~~l~sg~~dg~i~iwd~~~~~---~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~ 281 (512)
+.++ +|++.++.++|+|. |..||+|+.|+.|+||+...+. +...+ -.+|+..|+.++|+|.|++|++|
T Consensus 8 ~~~~-gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vl-------d~~hkrsVRsvAwsp~g~~La~a 79 (312)
T KOG0645|consen 8 QKLS-GHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVL-------DDGHKRSVRSVAWSPHGRYLASA 79 (312)
T ss_pred Eeec-CCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEec-------cccchheeeeeeecCCCcEEEEe
Confidence 3444 99999999999998 9999999999999999987422 11111 12599999999999999999999
Q ss_pred eCCCeEEEEEccCC--eeeEEeccccccCeEEEEEecCCCEEEEEeCCCcEEEEeCCCC---ceeEEeeCCccceeEEEE
Q 010362 282 SQDGKIKVWRIRSG--QCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSG---KLLKEFRGHSSYVNDAIF 356 (512)
Q Consensus 282 ~~dg~i~vwd~~~~--~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~i~d~~~~---~~~~~~~~~~~~v~~~~~ 356 (512)
|.|.++.||.-..+ +++..++ +|...|.+++|+++|++||+++.|+.|.+|.+..+ ++...++.|...|..+.|
T Consensus 80 SFD~t~~Iw~k~~~efecv~~lE-GHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~W 158 (312)
T KOG0645|consen 80 SFDATVVIWKKEDGEFECVATLE-GHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIW 158 (312)
T ss_pred eccceEEEeecCCCceeEEeeee-ccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEE
Confidence 99999999986644 5778887 99999999999999999999999999999998744 567788999999999999
Q ss_pred cCCCCEEEEEeCCCcEEEEeCCC---CceeeecCCCCCCCCCCceeEEEEEcCCCCCeEEEEcCCCcEEEEecCCeEEEE
Q 010362 357 TNDGSRVVTASSDCTVKVWDLKS---TDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQVVKS 433 (512)
Q Consensus 357 ~~~~~~l~~~~~dg~i~iwd~~~---~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~ 433 (512)
+|...+|++++.|.+|++|+-.. -.+.+++. +|...+.++.|.|.+ ..+++++.|+.+++|....
T Consensus 159 HPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~------g~~~TVW~~~F~~~G-~rl~s~sdD~tv~Iw~~~~----- 226 (312)
T KOG0645|consen 159 HPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLD------GHENTVWSLAFDNIG-SRLVSCSDDGTVSIWRLYT----- 226 (312)
T ss_pred cCCcceeEEeccCCeEEEEeecCCCCeeEEEEec------CccceEEEEEecCCC-ceEEEecCCcceEeeeecc-----
Confidence 99999999999999999998662 23455544 677899999999988 8999999999999998651
Q ss_pred eeCCcccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCe------e-EEeccccCCCeEEEEEcCC-CCeEEEEECCC
Q 010362 434 FSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGK------L-EHLMKVHEKDVIGVTHHPH-RNLLATYGEDC 505 (512)
Q Consensus 434 ~~~~~~~~~~~~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~------~-~~~~~~h~~~v~~v~~~p~-~~~l~s~~~dg 505 (512)
.....+...+..+.|. ...|++++.|+.|++|....+. + .+.-..|...|++|+|+|. .++|++||+||
T Consensus 227 -~~~~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG 303 (312)
T KOG0645|consen 227 -DLSGMHSRALYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDG 303 (312)
T ss_pred -CcchhcccceEeeeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCc
Confidence 1122234567778887 5579999999999999866431 1 1233568889999999994 78999999999
Q ss_pred eEEEec
Q 010362 506 TMKLWK 511 (512)
Q Consensus 506 ~i~iW~ 511 (512)
.|++|.
T Consensus 304 ~v~~W~ 309 (312)
T KOG0645|consen 304 IVNFWE 309 (312)
T ss_pred eEEEEE
Confidence 999996
No 20
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=3.2e-38 Score=304.83 Aligned_cols=296 Identities=30% Similarity=0.525 Sum_probs=256.0
Q ss_pred ceEEEecCcCceEEEEECCCCCEEEEEeCCCeEEEEEcCCCeeeccccccccceeeccCcceeEEEEcCCCCeEEEEeCC
Q 010362 205 SHTIKFGTKSHAECARFSPDGQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQD 284 (512)
Q Consensus 205 ~~~~~~~h~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d 284 (512)
...+...|...|.|+.|+|+|+.+++++.|+.+++|+..+.+. .....+.+|...|.+++|+|++.++++++.|
T Consensus 151 ~~~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~------~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D 224 (456)
T KOG0266|consen 151 EQTLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKS------NLLRELSGHTRGVSDVAFSPDGSYLLSGSDD 224 (456)
T ss_pred eeeecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccc------hhhccccccccceeeeEECCCCcEEEEecCC
Confidence 3444435588999999999999999999999999999866552 1122346699999999999999999999999
Q ss_pred CeEEEEEc-cCCeeeEEeccccccCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeeCCccceeEEEEcCCCCEE
Q 010362 285 GKIKVWRI-RSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRV 363 (512)
Q Consensus 285 g~i~vwd~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 363 (512)
++|++||+ ..+..++.+. +|...|++++|+|+++.+++|+.|++|++||+++++++..+.+|...|++++|++++++|
T Consensus 225 ~tiriwd~~~~~~~~~~l~-gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l 303 (456)
T KOG0266|consen 225 KTLRIWDLKDDGRNLKTLK-GHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLL 303 (456)
T ss_pred ceEEEeeccCCCeEEEEec-CCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEE
Confidence 99999999 5568888887 999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCcEEEEeCCCCc--eeeecCCCCCCCCCCceeEEEEEcCCCCCeEEEEcCCCcEEEEecC-CeEEEEeeCCccc
Q 010362 364 VTASSDCTVKVWDLKSTD--CLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQ-GQVVKSFSSGKRE 440 (512)
Q Consensus 364 ~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~~~~~-~~~~~~~~~~~~~ 440 (512)
++++.||.|++||+.++. +...+.... ... +++++.|+|++ .+++++..|+.+++||+. +.....+..+...
T Consensus 304 ~s~s~d~~i~vwd~~~~~~~~~~~~~~~~---~~~-~~~~~~fsp~~-~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~ 378 (456)
T KOG0266|consen 304 VSASYDGTIRVWDLETGSKLCLKLLSGAE---NSA-PVTSVQFSPNG-KYLLSASLDRTLKLWDLRSGKSVGTYTGHSNL 378 (456)
T ss_pred EEcCCCccEEEEECCCCceeeeecccCCC---CCC-ceeEEEECCCC-cEEEEecCCCeEEEEEccCCcceeeecccCCc
Confidence 999999999999999998 344444222 222 79999999988 999999999999999999 5555555554432
Q ss_pred CCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCeeEEecccc-CCCeEEEEEcCCCCeEEEEE--CCCeEEEecC
Q 010362 441 GGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVH-EKDVIGVTHHPHRNLLATYG--EDCTMKLWKP 512 (512)
Q Consensus 441 ~~~~~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~h-~~~v~~v~~~p~~~~l~s~~--~dg~i~iW~~ 512 (512)
...+.+...++.|.++++|+.|+.|++||..++..+..+.+| ...+..+.|+|..+++++++ .|+.+++|..
T Consensus 379 ~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~ 453 (456)
T KOG0266|consen 379 VRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWKY 453 (456)
T ss_pred ceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCCCCceeccccCCCcCeeeecCcCCCceEEEecC
Confidence 224445566889999999999999999999999999999999 88999999999999999998 7999999973
No 21
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=7.3e-39 Score=272.94 Aligned_cols=289 Identities=23% Similarity=0.380 Sum_probs=249.7
Q ss_pred ccccceEEEecCcCceEEEEECCCCCEEEEEeCCCeEEEEEcCCCeeeccccccccceeeccCcceeEEEEcCCCCeEEE
Q 010362 201 PTTLSHTIKFGTKSHAECARFSPDGQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLAS 280 (512)
Q Consensus 201 ~~~~~~~~~~~h~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s 280 (512)
|-+..+.+. +|.+.|.|+++.|.+.+|++|+.|++|+|||+.+|++.. ++.||-..|..+++|+-..|+++
T Consensus 140 pwKl~rVi~-gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~Lkl--------tltGhi~~vr~vavS~rHpYlFs 210 (460)
T KOG0285|consen 140 PWKLYRVIS-GHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKL--------TLTGHIETVRGVAVSKRHPYLFS 210 (460)
T ss_pred cceehhhhh-hccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEE--------eecchhheeeeeeecccCceEEE
Confidence 334445555 999999999999999999999999999999999998876 45569999999999999999999
Q ss_pred EeCCCeEEEEEccCCeeeEEeccccccCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeeCCccceeEEEEcCCC
Q 010362 281 GSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDG 360 (512)
Q Consensus 281 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~ 360 (512)
++.|+.|+.||++..+.++.+. +|-..|.|++.+|.-..|++|+.|.++++||+++...+..+.+|..+|.++.+.|-.
T Consensus 211 ~gedk~VKCwDLe~nkvIR~Yh-GHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~d 289 (460)
T KOG0285|consen 211 AGEDKQVKCWDLEYNKVIRHYH-GHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTD 289 (460)
T ss_pred ecCCCeeEEEechhhhhHHHhc-cccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCC
Confidence 9999999999999999999997 999999999999999999999999999999999999999999999999999999988
Q ss_pred CEEEEEeCCCcEEEEeCCCCceeeecCCCCCCCCCCceeEEEEEcCCCCCeEEEEcCCCcEEEEecC-CeEEEEeeCCcc
Q 010362 361 SRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQ-GQVVKSFSSGKR 439 (512)
Q Consensus 361 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~~~~~-~~~~~~~~~~~~ 439 (512)
..+++|+.|++|++||++.++...++. .|...+.+++.+|.. ..++++ ....|+-|++. +..+..+. .
T Consensus 290 pqvit~S~D~tvrlWDl~agkt~~tlt------~hkksvral~lhP~e-~~fASa-s~dnik~w~~p~g~f~~nls---g 358 (460)
T KOG0285|consen 290 PQVITGSHDSTVRLWDLRAGKTMITLT------HHKKSVRALCLHPKE-NLFASA-SPDNIKQWKLPEGEFLQNLS---G 358 (460)
T ss_pred CceEEecCCceEEEeeeccCceeEeee------cccceeeEEecCCch-hhhhcc-CCccceeccCCccchhhccc---c
Confidence 899999999999999999998877765 567799999999975 444444 45578889987 44444432 2
Q ss_pred cCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCeeEEeccc--------cCCCeEEEEEcCCCCeEEEEECCCeEEEec
Q 010362 440 EGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKV--------HEKDVIGVTHHPHRNLLATYGEDCTMKLWK 511 (512)
Q Consensus 440 ~~~~~~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~--------h~~~v~~v~~~p~~~~l~s~~~dg~i~iW~ 511 (512)
+...+.+++...|| ++++|+++|.+.+||.++|...+..+. ....|.+.+|...+..|+||..|.+|++|+
T Consensus 359 h~~iintl~~nsD~-v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~eadKtIk~~k 437 (460)
T KOG0285|consen 359 HNAIINTLSVNSDG-VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEADKTIKMYK 437 (460)
T ss_pred ccceeeeeeeccCc-eEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceEEeccCCcceEEEe
Confidence 45567788887766 677899999999999999865544321 234689999999999999999999999996
No 22
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=5.3e-38 Score=259.25 Aligned_cols=255 Identities=26% Similarity=0.417 Sum_probs=214.5
Q ss_pred cCccccceEEEecCcCceEEEEECCCCCEEEEEeCCCeEEEEEcCCCeeeccccccccceeeccCcceeEEEEcCCCCeE
Q 010362 199 MYPTTLSHTIKFGTKSHAECARFSPDGQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEML 278 (512)
Q Consensus 199 ~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l 278 (512)
..-..+.+.+. ||+..|..+..++||++.++++.||++++||+.+++..+ .|.+|...|.+++|+||++.+
T Consensus 50 ~~~G~~~r~~~-GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~--------~f~GH~~dVlsva~s~dn~qi 120 (315)
T KOG0279|consen 50 IKYGVPVRRLT-GHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTR--------RFVGHTKDVLSVAFSTDNRQI 120 (315)
T ss_pred cccCceeeeee-ccceEecceEEccCCceEEeccccceEEEEEecCCcEEE--------EEEecCCceEEEEecCCCcee
Confidence 34445556665 899999999999999999999999999999999986554 466799999999999999999
Q ss_pred EEEeCCCeEEEEEccCCeeeEEeccccccCeEEEEEecC--CCEEEEEeCCCcEEEEeCCCCceeEEeeCCccceeEEEE
Q 010362 279 ASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRD--GSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIF 356 (512)
Q Consensus 279 ~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~ 356 (512)
++|+.|.+|++|++..+.........+...|+|+.|+|+ ..+|++++.|++|++||+++.+....+.+|++.++.+++
T Consensus 121 vSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~v 200 (315)
T KOG0279|consen 121 VSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTV 200 (315)
T ss_pred ecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEE
Confidence 999999999999987554443333233789999999997 789999999999999999999999999999999999999
Q ss_pred cCCCCEEEEEeCCCcEEEEeCCCCceeeecCCCCCCCCCCceeEEEEEcCCCCCeEEEEcCCCcEEEEecCCeE-EEEee
Q 010362 357 TNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQV-VKSFS 435 (512)
Q Consensus 357 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~-~~~~~ 435 (512)
+|||...++|+.||.+.+||++.++....+. +...|.+++|+|+. +.++...+..|+|||+..+. +..+.
T Consensus 201 SpDGslcasGgkdg~~~LwdL~~~k~lysl~-------a~~~v~sl~fspnr--ywL~~at~~sIkIwdl~~~~~v~~l~ 271 (315)
T KOG0279|consen 201 SPDGSLCASGGKDGEAMLWDLNEGKNLYSLE-------AFDIVNSLCFSPNR--YWLCAATATSIKIWDLESKAVVEELK 271 (315)
T ss_pred CCCCCEEecCCCCceEEEEEccCCceeEecc-------CCCeEeeEEecCCc--eeEeeccCCceEEEeccchhhhhhcc
Confidence 9999999999999999999999999988775 56799999999974 55555566669999998442 22221
Q ss_pred C------CcccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcC
Q 010362 436 S------GKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQ 471 (512)
Q Consensus 436 ~------~~~~~~~~~~~~~s~~g~~l~~g~~dg~i~iwd~~ 471 (512)
. ..........++|++||..|++|..|+.|++|.+.
T Consensus 272 ~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 272 LDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred ccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEee
Confidence 1 11123345688999999999999999999999864
No 23
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=6.8e-37 Score=282.36 Aligned_cols=285 Identities=32% Similarity=0.583 Sum_probs=250.7
Q ss_pred EEEecCcCceEEEEECCCCCEEEEEeCCCeEEEEEcCCCeeeccccccccceeeccCcceeEEEEcCCCCeEEEEeCCCe
Q 010362 207 TIKFGTKSHAECARFSPDGQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQDGK 286 (512)
Q Consensus 207 ~~~~~h~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~ 286 (512)
+++ +|.+.|++++|+|++++|++++.||.|.+|++.+++... .+..|...+..+.|+|+++++++++.||.
T Consensus 4 ~~~-~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~--------~~~~~~~~i~~~~~~~~~~~l~~~~~~~~ 74 (289)
T cd00200 4 TLK-GHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLR--------TLKGHTGPVRDVAASADGTYLASGSSDKT 74 (289)
T ss_pred Hhc-ccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEE--------EEecCCcceeEEEECCCCCEEEEEcCCCe
Confidence 344 899999999999999999999999999999998776333 34458889999999999999999999999
Q ss_pred EEEEEccCCeeeEEeccccccCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeeCCccceeEEEEcCCCCEEEEE
Q 010362 287 IKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTA 366 (512)
Q Consensus 287 i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 366 (512)
|++||+.+++....+. .|...+.++.|+|++.++++++.+|.+.+||+++++....+..|...+.++.|+|++.+++++
T Consensus 75 i~i~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 153 (289)
T cd00200 75 IRLWDLETGECVRTLT-GHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASS 153 (289)
T ss_pred EEEEEcCcccceEEEe-ccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEE
Confidence 9999999888777776 788899999999998888888889999999999899998898899999999999998888888
Q ss_pred eCCCcEEEEeCCCCceeeecCCCCCCCCCCceeEEEEEcCCCCCeEEEEcCCCcEEEEecCC-eEEEEeeCCcccCCcEE
Q 010362 367 SSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQG-QVVKSFSSGKREGGDFV 445 (512)
Q Consensus 367 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~ 445 (512)
+.||.|++||+++++....+. .+...+.++.++|++ ..+++++.++.+.+||.+. .....+.. +...+.
T Consensus 154 ~~~~~i~i~d~~~~~~~~~~~------~~~~~i~~~~~~~~~-~~l~~~~~~~~i~i~d~~~~~~~~~~~~---~~~~i~ 223 (289)
T cd00200 154 SQDGTIKLWDLRTGKCVATLT------GHTGEVNSVAFSPDG-EKLLSSSSDGTIKLWDLSTGKCLGTLRG---HENGVN 223 (289)
T ss_pred cCCCcEEEEEccccccceeEe------cCccccceEEECCCc-CEEEEecCCCcEEEEECCCCceecchhh---cCCceE
Confidence 889999999999877666654 455689999999987 6777788899999999984 44433322 345789
Q ss_pred EEEECCCCCEEEEEeCCCeEEEEEcCCCeeEEeccccCCCeEEEEEcCCCCeEEEEECCCeEEEec
Q 010362 446 AACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPHRNLLATYGEDCTMKLWK 511 (512)
Q Consensus 446 ~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~~~dg~i~iW~ 511 (512)
+++|+|++.++++++.+|.|++||+.+++....+..|...|.+++|+|++.++++++.||.|++|+
T Consensus 224 ~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 224 SVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred EEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 999999999999988899999999999999999999999999999999999999999999999997
No 24
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=4.4e-38 Score=277.53 Aligned_cols=296 Identities=21% Similarity=0.371 Sum_probs=248.7
Q ss_pred ccccceEEEecCcCceEEEEECCCCC-EEEEEeCCCeEEEEEcCCCe--eecccccccccee----eccCcceeEEEEcC
Q 010362 201 PTTLSHTIKFGTKSHAECARFSPDGQ-FLVSCSFDGFIEVWDYLSGK--LKKDLQYQADETF----MMHDETVLCIEFSR 273 (512)
Q Consensus 201 ~~~~~~~~~~~h~~~v~~~~~s~~~~-~l~sg~~dg~i~iwd~~~~~--~~~~~~~~~~~~~----~~h~~~v~~l~~s~ 273 (512)
|......+ .|+++|.+++|+|-.. .+++|+.|-+.++|++.... ....+..+....+ ...+..|++++|+.
T Consensus 168 ~~~~~kvl--~~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~ 245 (524)
T KOG0273|consen 168 PSSKAKVL--RHESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNN 245 (524)
T ss_pred cccceeec--cCCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecC
Confidence 33444444 4999999999999666 99999999999999986411 1111111000000 11346799999999
Q ss_pred CCCeEEEEeCCCeEEEEEccCCeeeEEeccccccCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeeCCccceeE
Q 010362 274 DSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVND 353 (512)
Q Consensus 274 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~ 353 (512)
+|..||+|+.||.+++|+. +|..+.++. .|.++|.++.|+..|.+|++++.|+++.+||..++.....+.-|..+-.+
T Consensus 246 ~G~~LatG~~~G~~riw~~-~G~l~~tl~-~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lD 323 (524)
T KOG0273|consen 246 DGTLLATGSEDGEARIWNK-DGNLISTLG-QHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALD 323 (524)
T ss_pred CCCeEEEeecCcEEEEEec-Cchhhhhhh-ccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccc
Confidence 9999999999999999995 577778886 89999999999999999999999999999999999999999999888788
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEeCCCCceeeecCCCCCCCCCCceeEEEEEcCCCCCeEEEEcCCCcEEEEecC-CeEEE
Q 010362 354 AIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQ-GQVVK 432 (512)
Q Consensus 354 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~~~~~-~~~~~ 432 (512)
+.|-.+ ..+++++.||.|+++.+....+..++. +|.++|.++.|.|.+ .++++++.|+++++|... +....
T Consensus 324 VdW~~~-~~F~ts~td~~i~V~kv~~~~P~~t~~------GH~g~V~alk~n~tg-~LLaS~SdD~TlkiWs~~~~~~~~ 395 (524)
T KOG0273|consen 324 VDWQSN-DEFATSSTDGCIHVCKVGEDRPVKTFI------GHHGEVNALKWNPTG-SLLASCSDDGTLKIWSMGQSNSVH 395 (524)
T ss_pred eEEecC-ceEeecCCCceEEEEEecCCCcceeee------cccCceEEEEECCCC-ceEEEecCCCeeEeeecCCCcchh
Confidence 999765 468999999999999998877777765 689999999999998 999999999999999976 44444
Q ss_pred EeeCCcccCCcEEEEEECCCC---------CEEEEEeCCCeEEEEEcCCCeeEEeccccCCCeEEEEEcCCCCeEEEEEC
Q 010362 433 SFSSGKREGGDFVAACVSPKG---------EWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPHRNLLATYGE 503 (512)
Q Consensus 433 ~~~~~~~~~~~~~~~~~s~~g---------~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~~~ 503 (512)
.+.. |...|..+.|+|.| ..+++++.|++|++||+..+.+++.+..|..+|.+++|+|+++++|+|+.
T Consensus 396 ~l~~---Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~ 472 (524)
T KOG0273|consen 396 DLQA---HSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSL 472 (524)
T ss_pred hhhh---hccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCC
Confidence 4444 34568899999865 47899999999999999999999999999999999999999999999999
Q ss_pred CCeEEEec
Q 010362 504 DCTMKLWK 511 (512)
Q Consensus 504 dg~i~iW~ 511 (512)
||.|.+|+
T Consensus 473 dg~V~iws 480 (524)
T KOG0273|consen 473 DGCVHIWS 480 (524)
T ss_pred CCeeEecc
Confidence 99999996
No 25
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=5.6e-37 Score=285.24 Aligned_cols=307 Identities=22% Similarity=0.368 Sum_probs=255.2
Q ss_pred eeeccCcccccccccccCccccceEEEecCcCceEEEEECCCCCEEEEEeCCCeEEEEEcCCCeeeccccccccceeecc
Q 010362 183 FDLFRGTAAMKQDVEDMYPTTLSHTIKFGTKSHAECARFSPDGQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMH 262 (512)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h 262 (512)
.-.+.....+..-+|++......-..+ +|...++|+++||||+++|||+.||+|+|||...+-+.. +|..|
T Consensus 321 WiA~g~~klgQLlVweWqsEsYVlKQQ-gH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~v--------TFteH 391 (893)
T KOG0291|consen 321 WIAFGCSKLGQLLVWEWQSESYVLKQQ-GHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFV--------TFTEH 391 (893)
T ss_pred EEEEcCCccceEEEEEeeccceeeecc-ccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEE--------EeccC
Confidence 333444444566788888777766665 999999999999999999999999999999999887665 45569
Q ss_pred CcceeEEEEcCCCCeEEEEeCCCeEEEEEccCCeeeEEeccccccCeEEEEEecCCCEEEEEeCCC-cEEEEeCCCCcee
Q 010362 263 DETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDS-TARIHGLKSGKLL 341 (512)
Q Consensus 263 ~~~v~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg-~v~i~d~~~~~~~ 341 (512)
+..|+.+.|+..|+.+++++-||+|+.||+...+..+++..+......|++..|.|..+.+|+.|. .|++|++.+|+.+
T Consensus 392 ts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqll 471 (893)
T KOG0291|consen 392 TSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLL 471 (893)
T ss_pred CCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeee
Confidence 999999999999999999999999999999999999999877777788999999999999999886 6999999999999
Q ss_pred EEeeCCccceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCc-eeeecCCCCCCCCCCceeEEEEEcCCCCCeEEEEcCCCc
Q 010362 342 KEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTD-CLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSS 420 (512)
Q Consensus 342 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~ 420 (512)
..+.+|.++|.+++|+|.+..|++++.|.+|++||+-... ...++. ....+..++|.|++ ..+++++.||.
T Consensus 472 DiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~-------i~sdvl~vsfrPdG-~elaVaTldgq 543 (893)
T KOG0291|consen 472 DILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLE-------IRSDVLAVSFRPDG-KELAVATLDGQ 543 (893)
T ss_pred ehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCceeeeEe-------eccceeEEEEcCCC-CeEEEEEecce
Confidence 9999999999999999999999999999999999986542 333333 44678999999999 89999999999
Q ss_pred EEEEecCCeEEE-E-----------------eeCCcccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCeeEEecc--
Q 010362 421 IYIMTLQGQVVK-S-----------------FSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMK-- 480 (512)
Q Consensus 421 i~~~~~~~~~~~-~-----------------~~~~~~~~~~~~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~~-- 480 (512)
|.+||....... . .......+..++.+++|+||.+|++|+....|++||+.++-+++.++
T Consensus 544 Itf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~~~vllkkfqiS 623 (893)
T KOG0291|consen 544 ITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGESNSICIYDVPEGVLLKKFQIS 623 (893)
T ss_pred EEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCCcccEEEEECchhheeeeEEec
Confidence 999998732221 1 11111234678999999999999999999999999998765544321
Q ss_pred ------------------------------------------c---------c---CCCeEEEEEcCCCCeEEEEECCCe
Q 010362 481 ------------------------------------------V---------H---EKDVIGVTHHPHRNLLATYGEDCT 506 (512)
Q Consensus 481 ------------------------------------------~---------h---~~~v~~v~~~p~~~~l~s~~~dg~ 506 (512)
+ + .-.|.+|.|+|.|+.+|.++..|.
T Consensus 624 ~N~sLdg~~efln~rkmtEfG~~~LiD~e~~~~e~~i~~~lpG~~~gdlssRr~rpeIrv~sv~fsPtgraFAaatTEGl 703 (893)
T KOG0291|consen 624 DNRSLDGVLEFLNRRKMTEFGNMDLIDTEESDLEGRIDIALPGVQRGDLSSRRFRPEIRVTSVQFSPTGRAFAAATTEGL 703 (893)
T ss_pred cccchhHHHHHhccccccccCCccccccccccccccccccCCccccCCccccccCceEEEEEEEECCCcCeeeeecccce
Confidence 0 0 012779999999999999998883
No 26
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=1.8e-36 Score=251.81 Aligned_cols=275 Identities=21% Similarity=0.326 Sum_probs=242.7
Q ss_pred eeeeccCcccccccccccCccccceEEEecCcCceEEEEECCCCCEEEEEeCCCeEEEEEcCCCeeeccccccccceeec
Q 010362 182 QFDLFRGTAAMKQDVEDMYPTTLSHTIKFGTKSHAECARFSPDGQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMM 261 (512)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 261 (512)
...++....+++..+||.++....+.+. -....|..++|+|.|+++|.|+-|+...||++.+...... .+..+.+.+
T Consensus 67 sr~ivSaSqDGklIvWDs~TtnK~haip-l~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~--~~v~r~l~g 143 (343)
T KOG0286|consen 67 SRRIVSASQDGKLIVWDSFTTNKVHAIP-LPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGN--VRVSRELAG 143 (343)
T ss_pred cCeEEeeccCCeEEEEEcccccceeEEe-cCceeEEEEEECCCCCeEEecCcCceeEEEeccccccccc--ceeeeeecC
Confidence 3455667778889999999999999998 5677899999999999999999999999999985522211 123346888
Q ss_pred cCcceeEEEEcCCCCeEEEEeCCCeEEEEEccCCeeeEEeccccccCeEEEEEec-CCCEEEEEeCCCcEEEEeCCCCce
Q 010362 262 HDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSR-DGSQILSTSFDSTARIHGLKSGKL 340 (512)
Q Consensus 262 h~~~v~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~v~i~d~~~~~~ 340 (512)
|++-+.|+.|-+| ..|+++|.|.+..+||+++|+.+..+. +|.+.|.+++++| +++.+++|+.|+..++||++.+.+
T Consensus 144 HtgylScC~f~dD-~~ilT~SGD~TCalWDie~g~~~~~f~-GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c 221 (343)
T KOG0286|consen 144 HTGYLSCCRFLDD-NHILTGSGDMTCALWDIETGQQTQVFH-GHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQC 221 (343)
T ss_pred ccceeEEEEEcCC-CceEecCCCceEEEEEcccceEEEEec-CCcccEEEEecCCCCCCeEEecccccceeeeeccCcce
Confidence 9999999999885 468899999999999999999999997 9999999999999 999999999999999999999999
Q ss_pred eEEeeCCccceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeecCCCCCCCCCCceeEEEEEcCCCCCeEEEEcCCCc
Q 010362 341 LKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSS 420 (512)
Q Consensus 341 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~ 420 (512)
+++|.+|.+.|+++.|.|+|.-+++|+.|++.++||+|..+.+..+.... ...+|++++|+..+ .++++|..|..
T Consensus 222 ~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~----~~~gitSv~FS~SG-RlLfagy~d~~ 296 (343)
T KOG0286|consen 222 VQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDS----IICGITSVAFSKSG-RLLFAGYDDFT 296 (343)
T ss_pred eEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCc----ccCCceeEEEcccc-cEEEeeecCCc
Confidence 99999999999999999999999999999999999999998888877443 45689999999988 89999999999
Q ss_pred EEEEecC-CeEEEEeeCCcccCCcEEEEEECCCCCEEEEEeCCCeEEEEE
Q 010362 421 IYIMTLQ-GQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFS 469 (512)
Q Consensus 421 i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~dg~i~iwd 469 (512)
+.+||.- +.....+.. |...|.++..+|||.-+++|+.|..++||.
T Consensus 297 c~vWDtlk~e~vg~L~G---HeNRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 297 CNVWDTLKGERVGVLAG---HENRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred eeEeeccccceEEEeec---cCCeeEEEEECCCCcEEEecchhHheeecC
Confidence 9999986 555555543 467799999999999999999999999994
No 27
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=9.6e-37 Score=245.63 Aligned_cols=287 Identities=21% Similarity=0.374 Sum_probs=247.6
Q ss_pred ccccceEEEecCcCceEEEEECCCCCEEEEEeCCCeEEEEEcCCCeeeccccccccceeeccCcceeEEEEcCCCCeEEE
Q 010362 201 PTTLSHTIKFGTKSHAECARFSPDGQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLAS 280 (512)
Q Consensus 201 ~~~~~~~~~~~h~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s 280 (512)
|....+.+. .|.++|..+.|+-+|+|.++++.|.+|++|+...+.+++ ++.+|...|..++.+.|+..+++
T Consensus 6 ptkr~~~l~-~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~lik--------tYsghG~EVlD~~~s~Dnskf~s 76 (307)
T KOG0316|consen 6 PTKRLSILD-CAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIK--------TYSGHGHEVLDAALSSDNSKFAS 76 (307)
T ss_pred cchhceeec-ccccceEEEEEccCCCEEEEcCCCceEEeecccccceee--------eecCCCceeeecccccccccccc
Confidence 333444444 899999999999999999999999999999998888776 45569999999999999999999
Q ss_pred EeCCCeEEEEEccCCeeeEEeccccccCeEEEEEecCCCEEEEEeCCCcEEEEeCCCC--ceeEEeeCCccceeEEEEcC
Q 010362 281 GSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSG--KLLKEFRGHSSYVNDAIFTN 358 (512)
Q Consensus 281 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~i~d~~~~--~~~~~~~~~~~~v~~~~~~~ 358 (512)
|+.|..+.+||+.+|+..+++. +|.+.|+.+.|+.+...+++|+.|..+++||.++. ++++.+......|.++..+
T Consensus 77 ~GgDk~v~vwDV~TGkv~Rr~r-gH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~- 154 (307)
T KOG0316|consen 77 CGGDKAVQVWDVNTGKVDRRFR-GHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA- 154 (307)
T ss_pred CCCCceEEEEEcccCeeeeecc-cccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec-
Confidence 9999999999999999999997 99999999999999999999999999999999764 6788887777889988886
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCceeeecCCCCCCCCCCceeEEEEEcCCCCCeEEEEcCCCcEEEEecC-CeEEEEeeCC
Q 010362 359 DGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQ-GQVVKSFSSG 437 (512)
Q Consensus 359 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~~~~~-~~~~~~~~~~ 437 (512)
+..+++|+.||+++.||++.|+....+. ..+|+++.+++++ +..++++.++.+++.|-. |+.+..+..+
T Consensus 155 -~heIvaGS~DGtvRtydiR~G~l~sDy~--------g~pit~vs~s~d~-nc~La~~l~stlrLlDk~tGklL~sYkGh 224 (307)
T KOG0316|consen 155 -EHEIVAGSVDGTVRTYDIRKGTLSSDYF--------GHPITSVSFSKDG-NCSLASSLDSTLRLLDKETGKLLKSYKGH 224 (307)
T ss_pred -ccEEEeeccCCcEEEEEeecceeehhhc--------CCcceeEEecCCC-CEEEEeeccceeeecccchhHHHHHhccc
Confidence 4579999999999999999988655543 4689999999998 888999999999999988 5555555555
Q ss_pred cccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCeeEEeccccCCC-eEEEEEcCCCCeEEEEECCCeEEEe
Q 010362 438 KREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKD-VIGVTHHPHRNLLATYGEDCTMKLW 510 (512)
Q Consensus 438 ~~~~~~~~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~-v~~v~~~p~~~~l~s~~~dg~i~iW 510 (512)
. ....-..+++......+++|++||.|++||+.++..+..+..|... |.++.++|.-.-|+++.. +.+..|
T Consensus 225 k-n~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~~f~~A~~-~~~~~~ 296 (307)
T KOG0316|consen 225 K-NMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPTMDDFITATG-HGDLFW 296 (307)
T ss_pred c-cceeeeeeeecccceeEEeccCCceEEEEEeccceeeeeeccCCceeEEeeecccCccceeEecC-Cceece
Confidence 4 3344567888999999999999999999999999999999988877 889999998776766653 445555
No 28
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=100.00 E-value=3.7e-36 Score=251.82 Aligned_cols=355 Identities=21% Similarity=0.330 Sum_probs=265.3
Q ss_pred ccccCchHHHHHHHHHHHhhhhcCCCCCCCeeee-----ccCcc-cccccccccC--ccccceEEEecCcCceEEEEECC
Q 010362 152 VSVVPPSRLMALIGQALKWQQHQGLLPPGTQFDL-----FRGTA-AMKQDVEDMY--PTTLSHTIKFGTKSHAECARFSP 223 (512)
Q Consensus 152 ~~~~p~~rl~~l~~~~~~~~~~~~~~~~~~~~~~-----~~~~~-~~~~~~~~~~--~~~~~~~~~~~h~~~v~~~~~s~ 223 (512)
....|++||+.|+...++...+..+...+....+ ..|.+ .+..+..... |.+........|++++.+.+|||
T Consensus 43 ~~~~PserLl~lv~~gmq~~~d~~~~~~~~S~~~~t~p~~~giDle~dadaq~~s~e~~~yEt~ylt~HK~~cR~aafs~ 122 (430)
T KOG0640|consen 43 NICAPSERLLHLVAKGMQAENDGDLRAVSSSVLLITTPVTAGIDLEFDADAQGSSPEPSEYETKYLTSHKSPCRAAAFSP 122 (430)
T ss_pred CCCCCHHHHHHHHHHHhhcccCcceecccccccceeccCcCceeeeeccccccCCCCCcccceEEEeecccceeeeeeCC
Confidence 3466788888888777755433322222111000 00000 0111222222 33333344458999999999999
Q ss_pred CCCEEEEEeCCCeEEEEEcCCCee---ecc-------ccccccceeeccCcceeEEEEcCCCCeEEEEeCCCeEEEEEcc
Q 010362 224 DGQFLVSCSFDGFIEVWDYLSGKL---KKD-------LQYQADETFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWRIR 293 (512)
Q Consensus 224 ~~~~l~sg~~dg~i~iwd~~~~~~---~~~-------~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~vwd~~ 293 (512)
||.++|+|+.|..|+|.|++..-. ... -.-+..+++..|...|+++.|+|...+|++|+.|++|++||+.
T Consensus 123 DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ILiS~srD~tvKlFDfs 202 (430)
T KOG0640|consen 123 DGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETILISGSRDNTVKLFDFS 202 (430)
T ss_pred CCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhheEEeccCCCeEEEEecc
Confidence 999999999999999999862110 000 0113456788899999999999999999999999999999997
Q ss_pred CCeeeEEecc-ccccCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEe---eCCccceeEEEEcCCCCEEEEEeCC
Q 010362 294 SGQCLRRLER-AHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEF---RGHSSYVNDAIFTNDGSRVVTASSD 369 (512)
Q Consensus 294 ~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~~~~~d 369 (512)
.....+.++. ....+|.++.|+|.|.++++|....++++||+++.++...- ..|.+.|+++.+++.++..++++.|
T Consensus 203 K~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkD 282 (430)
T KOG0640|consen 203 KTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGSLYVTASKD 282 (430)
T ss_pred cHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccccceeEEEecCCccEEEEeccC
Confidence 6543332221 34678999999999999999999999999999998886554 3588999999999999999999999
Q ss_pred CcEEEEeCCCCceeeecCCCCCCCCCCceeEEEEEcCCCCCeEEEEcCCCcEEEEecC-CeEEEEeeCCcccC--CcEEE
Q 010362 370 CTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQ-GQVVKSFSSGKREG--GDFVA 446 (512)
Q Consensus 370 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~~~~~-~~~~~~~~~~~~~~--~~~~~ 446 (512)
|.|++||--+++|+.++.... ....|.+..|..++ .++++.+.|..+++|.+. ++.+..+......+ ..-+.
T Consensus 283 G~IklwDGVS~rCv~t~~~AH----~gsevcSa~Ftkn~-kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtq 357 (430)
T KOG0640|consen 283 GAIKLWDGVSNRCVRTIGNAH----GGSEVCSAVFTKNG-KYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQ 357 (430)
T ss_pred CcEEeeccccHHHHHHHHhhc----CCceeeeEEEccCC-eEEeecCCcceeeeeeecCCceEEEEecCCcccchhhhhh
Confidence 999999999999999887432 24567777777666 999999999999999998 66666666542211 12235
Q ss_pred EEECCCCCEEEEEe-CCCeEEEEEcCCCeeEEec-cccCCCeEEEEEcCCCCeEEEEECCCeEEEec
Q 010362 447 ACVSPKGEWIYCVG-EDRNLYCFSHQSGKLEHLM-KVHEKDVIGVTHHPHRNLLATYGEDCTMKLWK 511 (512)
Q Consensus 447 ~~~s~~g~~l~~g~-~dg~i~iwd~~~~~~~~~~-~~h~~~v~~v~~~p~~~~l~s~~~dg~i~iW~ 511 (512)
..|.....|++.-. ..+.++-||.+++..+..+ -+|.+.+..+..+|.+..+.+||+|.++|+|-
T Consensus 358 AvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~raRFWy 424 (430)
T KOG0640|consen 358 AVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDFRARFWY 424 (430)
T ss_pred hhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCceeeecccceeeeee
Confidence 56777777877766 4678999999998766554 37999999999999999999999999999994
No 29
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=4.1e-35 Score=304.68 Aligned_cols=287 Identities=15% Similarity=0.205 Sum_probs=232.7
Q ss_pred cCcCceEEEEECCCCCEEEEEeCCCeEEEEEcCCCeeeccccccccceeeccCcceeEEEEcC-CCCeEEEEeCCCeEEE
Q 010362 211 GTKSHAECARFSPDGQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSR-DSEMLASGSQDGKIKV 289 (512)
Q Consensus 211 ~h~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~-~~~~l~s~~~dg~i~v 289 (512)
+|.+.|.+++|+|+|+++|+|+.||.|+||+.............+...+. +...|.+++|+| ++.+|++++.||+|++
T Consensus 481 ~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~las~~~Dg~v~l 559 (793)
T PLN00181 481 NSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKLSGICWNSYIKSQVASSNFEGVVQV 559 (793)
T ss_pred CCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCceeeEEeccCCCCEEEEEeCCCeEEE
Confidence 48999999999999999999999999999997542111000000111222 456899999988 4789999999999999
Q ss_pred EEccCCeeeEEeccccccCeEEEEEec-CCCEEEEEeCCCcEEEEeCCCCceeEEeeCCccceeEEEEc-CCCCEEEEEe
Q 010362 290 WRIRSGQCLRRLERAHSEGVTSLVFSR-DGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFT-NDGSRVVTAS 367 (512)
Q Consensus 290 wd~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~ 367 (512)
||+.+++.+..+. .|...|.+++|+| ++.+|++|+.||.|++||++++..+..+..+ ..+.++.|+ +++.++++|+
T Consensus 560 Wd~~~~~~~~~~~-~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~-~~v~~v~~~~~~g~~latgs 637 (793)
T PLN00181 560 WDVARSQLVTEMK-EHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTK-ANICCVQFPSESGRSLAFGS 637 (793)
T ss_pred EECCCCeEEEEec-CCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecC-CCeEEEEEeCCCCCEEEEEe
Confidence 9999999888886 8999999999997 7889999999999999999999988888755 568999995 5789999999
Q ss_pred CCCcEEEEeCCCCce-eeecCCCCCCCCCCceeEEEEEcCCCCCeEEEEcCCCcEEEEecCC-------eEEEEeeCCcc
Q 010362 368 SDCTVKVWDLKSTDC-LQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQG-------QVVKSFSSGKR 439 (512)
Q Consensus 368 ~dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~~~~~~-------~~~~~~~~~~~ 439 (512)
.||.|++||+++... ...+ .+|...|.++.|.+ ...+++++.|+.|++||++. ..+..+. .
T Consensus 638 ~dg~I~iwD~~~~~~~~~~~------~~h~~~V~~v~f~~--~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~---g 706 (793)
T PLN00181 638 ADHKVYYYDLRNPKLPLCTM------IGHSKTVSYVRFVD--SSTLVSSSTDNTLKLWDLSMSISGINETPLHSFM---G 706 (793)
T ss_pred CCCeEEEEECCCCCccceEe------cCCCCCEEEEEEeC--CCEEEEEECCCEEEEEeCCCCccccCCcceEEEc---C
Confidence 999999999987642 2222 36778999999963 37899999999999999873 2333333 2
Q ss_pred cCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCeeEEec-------------cccCCCeEEEEEcCCCCeEEEEECCCe
Q 010362 440 EGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLM-------------KVHEKDVIGVTHHPHRNLLATYGEDCT 506 (512)
Q Consensus 440 ~~~~~~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~-------------~~h~~~v~~v~~~p~~~~l~s~~~dg~ 506 (512)
+...+..++++|++.+|++|+.||.|++|+.....++..+ ..|...|.+++|+|++.+|++|+.||.
T Consensus 707 h~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~ 786 (793)
T PLN00181 707 HTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGN 786 (793)
T ss_pred CCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCc
Confidence 4556788999999999999999999999998765443221 234567999999999999999999999
Q ss_pred EEEec
Q 010362 507 MKLWK 511 (512)
Q Consensus 507 i~iW~ 511 (512)
|+||+
T Consensus 787 I~i~~ 791 (793)
T PLN00181 787 IKILE 791 (793)
T ss_pred EEEEe
Confidence 99997
No 30
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=9.8e-38 Score=270.52 Aligned_cols=271 Identities=21% Similarity=0.326 Sum_probs=232.9
Q ss_pred eeeccCcccccccccccCccccceEEEecCcCceEEEEECCCCCEEEEEeCCCeEEEEEcCCCeeeccccccccceeecc
Q 010362 183 FDLFRGTAAMKQDVEDMYPTTLSHTIKFGTKSHAECARFSPDGQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMH 262 (512)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h 262 (512)
-.++.+...+....|+.........+ ..|.+.|.++.|+++|.++++|+.+|.|++|+.+-..... + ...|
T Consensus 109 RRLltgs~SGEFtLWNg~~fnFEtil-QaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnVk~-~-------~ahh 179 (464)
T KOG0284|consen 109 RRLLTGSQSGEFTLWNGTSFNFETIL-QAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNVKI-I-------QAHH 179 (464)
T ss_pred ceeEeecccccEEEecCceeeHHHHh-hhhcccceeEEEccCCCEEEEcCCCceEEecccchhhhHH-h-------hHhh
Confidence 45555666667777776544444434 4999999999999999999999999999999975443222 1 1125
Q ss_pred CcceeEEEEcCCCCeEEEEeCCCeEEEEEccCCeeeEEeccccccCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeE
Q 010362 263 DETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLK 342 (512)
Q Consensus 263 ~~~v~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~ 342 (512)
...|++++|+|+...+++|+.||+|+|||....+.-..+. +|.-.|.+++|+|....|++|+.|..|++||.+++.++.
T Consensus 180 ~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~-GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~ 258 (464)
T KOG0284|consen 180 AEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLR-GHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLA 258 (464)
T ss_pred hhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheec-cCCCCcceeccCCccceeEEccCCceeEeecCCCcchhh
Confidence 5999999999999999999999999999999888777775 999999999999999999999999999999999999999
Q ss_pred EeeCCccceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeecCCCCCCCCCCceeEEEEEcCCCCCeEEEEcCCCcEE
Q 010362 343 EFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIY 422 (512)
Q Consensus 343 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~ 422 (512)
++.+|+..|..+.|+|++++|++++.|..++++|+++.+.+..+. +|...++++.|+|-.+.++.+++.||.+.
T Consensus 259 tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r------~Hkkdv~~~~WhP~~~~lftsgg~Dgsvv 332 (464)
T KOG0284|consen 259 TLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYR------GHKKDVTSLTWHPLNESLFTSGGSDGSVV 332 (464)
T ss_pred hhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhh------cchhhheeeccccccccceeeccCCCceE
Confidence 999999999999999999999999999999999999776666654 78889999999999999999999999999
Q ss_pred EEecC-CeEEEEeeCCcccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcC
Q 010362 423 IMTLQ-GQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQ 471 (512)
Q Consensus 423 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~dg~i~iwd~~ 471 (512)
.|.+. ..++... ...+...|.+++|+|-|..|++|+.|.++++|...
T Consensus 333 h~~v~~~~p~~~i--~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r~ 380 (464)
T KOG0284|consen 333 HWVVGLEEPLGEI--PPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTRN 380 (464)
T ss_pred EEeccccccccCC--CcccccceeeeeccccceeEeecCCCcceeeeccC
Confidence 99998 3333332 33457789999999999999999999999999753
No 31
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=100.00 E-value=2.7e-37 Score=250.94 Aligned_cols=279 Identities=27% Similarity=0.394 Sum_probs=248.8
Q ss_pred ecCcCceEEEEECC---CCCEEEEEeCCCeEEEEEcCCCeeeccccccccceeeccCcceeEEEEcCCCCeEEEEeCCCe
Q 010362 210 FGTKSHAECARFSP---DGQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQDGK 286 (512)
Q Consensus 210 ~~h~~~v~~~~~s~---~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~ 286 (512)
.||+.+|-.++||| +|-+|++++.||.-.+-+-++|.-+. +|.||.+.|+....+.+...-|+++.|-+
T Consensus 11 ~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwig--------tfeghkgavw~~~l~~na~~aasaaadft 82 (334)
T KOG0278|consen 11 HGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIG--------TFEGHKGAVWSATLNKNATRAASAAADFT 82 (334)
T ss_pred cCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEE--------eeeccCcceeeeecCchhhhhhhhcccch
Confidence 39999999999986 89999999999988887777776554 66789999999999999999999999999
Q ss_pred EEEEEccCCeeeEEeccccccCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCc-eeEEeeCCccceeEEEEcCCCCEEEE
Q 010362 287 IKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGK-LLKEFRGHSSYVNDAIFTNDGSRVVT 365 (512)
Q Consensus 287 i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~ 365 (512)
-++||.-+|..+..+. |..-|.+++|+.|.++|++|+.+..+++||++..+ +...+.+|.+.|..+.|....+.+++
T Consensus 83 akvw~a~tgdelhsf~--hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLS 160 (334)
T KOG0278|consen 83 AKVWDAVTGDELHSFE--HKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILS 160 (334)
T ss_pred hhhhhhhhhhhhhhhh--hhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEe
Confidence 9999999999999986 88899999999999999999999999999997654 56788999999999999998899999
Q ss_pred EeCCCcEEEEeCCCCceeeecCCCCCCCCCCceeEEEEEcCCCCCeEEEEcCCCcEEEEecCC-eEEEEeeCCcccCCcE
Q 010362 366 ASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQG-QVVKSFSSGKREGGDF 444 (512)
Q Consensus 366 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~ 444 (512)
++.|++||+||.+++..++++..+ .+++++.+++++ .+++....+.|.+||... ..++.+.. ...|
T Consensus 161 Sadd~tVRLWD~rTgt~v~sL~~~-------s~VtSlEvs~dG--~ilTia~gssV~Fwdaksf~~lKs~k~----P~nV 227 (334)
T KOG0278|consen 161 SADDKTVRLWDHRTGTEVQSLEFN-------SPVTSLEVSQDG--RILTIAYGSSVKFWDAKSFGLLKSYKM----PCNV 227 (334)
T ss_pred eccCCceEEEEeccCcEEEEEecC-------CCCcceeeccCC--CEEEEecCceeEEeccccccceeeccC----cccc
Confidence 999999999999999999988744 478999999886 566667778899999983 44444443 3458
Q ss_pred EEEEECCCCCEEEEEeCCCeEEEEEcCCCeeEEec-cccCCCeEEEEEcCCCCeEEEEECCCeEEEec
Q 010362 445 VAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLM-KVHEKDVIGVTHHPHRNLLATYGEDCTMKLWK 511 (512)
Q Consensus 445 ~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~-~~h~~~v~~v~~~p~~~~l~s~~~dg~i~iW~ 511 (512)
.+...+|+...+++|++|+.++.||..+|+.+..+ ++|.++|.||.|+|+|...|+||.||+|++|.
T Consensus 228 ~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQ 295 (334)
T KOG0278|consen 228 ESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQ 295 (334)
T ss_pred ccccccCCCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEE
Confidence 88999999999999999999999999999999886 89999999999999999999999999999995
No 32
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=5.9e-35 Score=271.84 Aligned_cols=281 Identities=25% Similarity=0.404 Sum_probs=249.6
Q ss_pred cCceEEEEECCCCCEEEEEeCCCeEEEEEcCCCeeeccccccccceeeccCcceeEEEEcCCCCeEEEEeCC-CeEEEEE
Q 010362 213 KSHAECARFSPDGQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQD-GKIKVWR 291 (512)
Q Consensus 213 ~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d-g~i~vwd 291 (512)
...|+|++|++.-+.||+|-..|...+|.+..-.+++.+.. ...+|..++|+..|++||.|+.. |.+-||+
T Consensus 265 ~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSi--------s~~~I~t~~~N~tGDWiA~g~~klgQLlVwe 336 (893)
T KOG0291|consen 265 SSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSI--------SDQKILTVSFNSTGDWIAFGCSKLGQLLVWE 336 (893)
T ss_pred ccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeec--------ccceeeEEEecccCCEEEEcCCccceEEEEE
Confidence 37899999999999999999999999999988888776654 56789999999999999998764 8999999
Q ss_pred ccCCeeeEEeccccccCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeeCCccceeEEEEcCCCCEEEEEeCCCc
Q 010362 292 IRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCT 371 (512)
Q Consensus 292 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 371 (512)
..+...+.+.. +|...+++++++|||+++++|+.||.|++||..++-++.+|..|++.|+.+.|+..|+.+++++.||+
T Consensus 337 WqsEsYVlKQQ-gH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGt 415 (893)
T KOG0291|consen 337 WQSESYVLKQQ-GHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGT 415 (893)
T ss_pred eeccceeeecc-ccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCe
Confidence 99999888886 89999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCceeeecCCCCCCCCCCceeEEEEEcCCCCCeEEEEcCCC-cEEEEecC-CeEEEEeeCCcccCCcEEEEEE
Q 010362 372 VKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTS-SIYIMTLQ-GQVVKSFSSGKREGGDFVAACV 449 (512)
Q Consensus 372 i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~-~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 449 (512)
|+.||+...+..+++..|.+ ....+++..|.+ .++.+|+.|. .|++|+++ |+.+..+.. |.++|.+++|
T Consensus 416 VRAwDlkRYrNfRTft~P~p-----~QfscvavD~sG-elV~AG~~d~F~IfvWS~qTGqllDiLsG---HEgPVs~l~f 486 (893)
T KOG0291|consen 416 VRAWDLKRYRNFRTFTSPEP-----IQFSCVAVDPSG-ELVCAGAQDSFEIFVWSVQTGQLLDILSG---HEGPVSGLSF 486 (893)
T ss_pred EEeeeecccceeeeecCCCc-----eeeeEEEEcCCC-CEEEeeccceEEEEEEEeecCeeeehhcC---CCCcceeeEE
Confidence 99999999999999987753 467888999988 6777777665 59999998 444444443 4688999999
Q ss_pred CCCCCEEEEEeCCCeEEEEEcCCCe-eEEeccccCCCeEEEEEcCCCCeEEEEECCCeEEEecC
Q 010362 450 SPKGEWIYCVGEDRNLYCFSHQSGK-LEHLMKVHEKDVIGVTHHPHRNLLATYGEDCTMKLWKP 512 (512)
Q Consensus 450 s~~g~~l~~g~~dg~i~iwd~~~~~-~~~~~~~h~~~v~~v~~~p~~~~l~s~~~dg~i~iW~~ 512 (512)
+|+|..|++|+.|.+|++||+-... ...++. +...+.+++|+|+|+-+|+++-||.|.+||+
T Consensus 487 ~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~-i~sdvl~vsfrPdG~elaVaTldgqItf~d~ 549 (893)
T KOG0291|consen 487 SPDGSLLASGSWDKTVRIWDIFSSSGTVETLE-IRSDVLAVSFRPDGKELAVATLDGQITFFDI 549 (893)
T ss_pred ccccCeEEeccccceEEEEEeeccCceeeeEe-eccceeEEEEcCCCCeEEEEEecceEEEEEh
Confidence 9999999999999999999987653 334443 6778999999999999999999999999985
No 33
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=5.2e-36 Score=278.38 Aligned_cols=316 Identities=23% Similarity=0.317 Sum_probs=259.3
Q ss_pred eccCcccccccccccCccccceEEEecCcCceEEEEECCCCCEEEEEeCCCeEEEEEcCCCeeeccccccccceeeccCc
Q 010362 185 LFRGTAAMKQDVEDMYPTTLSHTIKFGTKSHAECARFSPDGQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHDE 264 (512)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~ 264 (512)
++.........+|......+.+..+..|+++|.-++|+|.|..+++|+.||.|+|||+..+.+.. .|+||.+
T Consensus 77 L~~a~rs~llrv~~L~tgk~irswKa~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~th--------~fkG~gG 148 (775)
T KOG0319|consen 77 LVTASRSQLLRVWSLPTGKLIRSWKAIHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGYCTH--------SFKGHGG 148 (775)
T ss_pred EEEeeccceEEEEEcccchHhHhHhhccCCCeEEEEEcCCCceEEeccccceEEEEEeeCCEEEE--------EecCCCc
Confidence 33344445567888888899999997899999999999999999999999999999999887665 5677999
Q ss_pred ceeEEEEcCCCC--eEEEEeCCCeEEEEEccCCee-eEEeccccccCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCc--
Q 010362 265 TVLCIEFSRDSE--MLASGSQDGKIKVWRIRSGQC-LRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGK-- 339 (512)
Q Consensus 265 ~v~~l~~s~~~~--~l~s~~~dg~i~vwd~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~-- 339 (512)
.|.++.|+|+-. .|++|..|+++++||+.+... +..+. .|.+.|++++|++|+..+++++.|..+.+||+.+.+
T Consensus 149 vVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~tcl~~~~-~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l 227 (775)
T KOG0319|consen 149 VVSSLLFHPHWNRWLLASGATDGTVRVWNLNDKRTCLHTMI-LHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKL 227 (775)
T ss_pred eEEEEEeCCccchhheeecCCCceEEEEEcccCchHHHHHH-hhhhheeeeeeccCCceEEEeccCcEEEEeehhhhhhh
Confidence 999999999654 589999999999999986654 55565 799999999999999888888888888888763100
Q ss_pred --------------------------------------------------------------------------------
Q 010362 340 -------------------------------------------------------------------------------- 339 (512)
Q Consensus 340 -------------------------------------------------------------------------------- 339 (512)
T Consensus 228 ~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l 307 (775)
T KOG0319|consen 228 KTLPLYESLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFL 307 (775)
T ss_pred heechhhheeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEE
Confidence
Q ss_pred ---------------------------------------e----------eEEeeCCccceeEEEEcCCCCEEEEEeCCC
Q 010362 340 ---------------------------------------L----------LKEFRGHSSYVNDAIFTNDGSRVVTASSDC 370 (512)
Q Consensus 340 ---------------------------------------~----------~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 370 (512)
. ...+.+|...|.++....+|.+|++|+.|.
T Consensus 308 ~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~ 387 (775)
T KOG0319|consen 308 YDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDK 387 (775)
T ss_pred EEccccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccCcEEEEecCCc
Confidence 0 001235666677777555677899999999
Q ss_pred cEEEEeCCCCceeeecCCCCCCCCCCceeEEEEEcCCCCCeEEEEcCCCcEEEEecCCe-------EEEEeeCCcccCCc
Q 010362 371 TVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQ-------VVKSFSSGKREGGD 443 (512)
Q Consensus 371 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~-------~~~~~~~~~~~~~~ 443 (512)
++++|.+..+... ........+|...|.+++++..+..++++++.|+++++|++... ....-.....|...
T Consensus 388 svilWr~~~~~~~--~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKd 465 (775)
T KOG0319|consen 388 SVILWRLNNNCSK--SLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKD 465 (775)
T ss_pred eEEEEEecCCcch--hhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhccc
Confidence 9999988443322 22223446899999999999999999999999999999999861 11112233456788
Q ss_pred EEEEEECCCCCEEEEEeCCCeEEEEEcCCCeeEEeccccCCCeEEEEEcCCCCeEEEEECCCeEEEec
Q 010362 444 FVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPHRNLLATYGEDCTMKLWK 511 (512)
Q Consensus 444 ~~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~~~dg~i~iW~ 511 (512)
|++++++|+..++++|+.|.+.+||++....+..++.+|...|.+|.|+|..+.++|+|.|++|+||.
T Consensus 466 IN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~ 533 (775)
T KOG0319|consen 466 INCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWS 533 (775)
T ss_pred ccceEecCCCceEEecccccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999996
No 34
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=100.00 E-value=1.2e-34 Score=237.86 Aligned_cols=281 Identities=20% Similarity=0.340 Sum_probs=238.8
Q ss_pred ecCcCceEEEEECCCCCEEEEEeCCCeEEEEEcCCCeeeccccccccceeeccCcceeEEEEcCCCCeEEEEeCCCeEEE
Q 010362 210 FGTKSHAECARFSPDGQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQDGKIKV 289 (512)
Q Consensus 210 ~~h~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~v 289 (512)
.||..+++.+.|+.+|++|++++.|.++.||-..+|+.+. ++.||.+.|+|+..+-+.+.+++|+.|.++++
T Consensus 7 ~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlG--------ty~GHtGavW~~Did~~s~~liTGSAD~t~kL 78 (327)
T KOG0643|consen 7 QGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLG--------TYDGHTGAVWCCDIDWDSKHLITGSADQTAKL 78 (327)
T ss_pred ccCccccceEEecCCCcEEEEecCCCCceEEEecCCceee--------eecCCCceEEEEEecCCcceeeeccccceeEE
Confidence 3999999999999999999999999999999887887665 56679999999999999999999999999999
Q ss_pred EEccCCeeeEEeccccccCeEEEEEecCCCEEEEEeCC-----CcEEEEeCC-------CCceeEEeeCCccceeEEEEc
Q 010362 290 WRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFD-----STARIHGLK-------SGKLLKEFRGHSSYVNDAIFT 357 (512)
Q Consensus 290 wd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----g~v~i~d~~-------~~~~~~~~~~~~~~v~~~~~~ 357 (512)
||+++|+++..+. ...+|..+.|+++|++++..+.+ +.|.++|++ +.++...+..+.+.++.+.|.
T Consensus 79 WDv~tGk~la~~k--~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg 156 (327)
T KOG0643|consen 79 WDVETGKQLATWK--TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWG 156 (327)
T ss_pred EEcCCCcEEEEee--cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeec
Confidence 9999999999986 67899999999999988877643 679999998 456678888888999999999
Q ss_pred CCCCEEEEEeCCCcEEEEeCCCCceeeecCCCCCCCCCCceeEEEEEcCCCCCeEEEEcCCCcEEEEecCCe-EEEEeeC
Q 010362 358 NDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQ-VVKSFSS 436 (512)
Q Consensus 358 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~-~~~~~~~ 436 (512)
|-+++|++|..||.|.+||.+++....... ..|...|+.+.++|+. .++++++.|.+-++||...- .++.+..
T Consensus 157 ~l~~~ii~Ghe~G~is~~da~~g~~~v~s~-----~~h~~~Ind~q~s~d~-T~FiT~s~Dttakl~D~~tl~v~Kty~t 230 (327)
T KOG0643|consen 157 PLGETIIAGHEDGSISIYDARTGKELVDSD-----EEHSSKINDLQFSRDR-TYFITGSKDTTAKLVDVRTLEVLKTYTT 230 (327)
T ss_pred ccCCEEEEecCCCcEEEEEcccCceeeech-----hhhccccccccccCCc-ceEEecccCccceeeeccceeeEEEeee
Confidence 999999999999999999999986443322 3467799999999988 99999999999999999954 4444443
Q ss_pred CcccCCcEEEEEECCCCCEEEEEeCCC--eEEEEEcCCC------------eeEEeccccCCCeEEEEEcCCCCeEEEEE
Q 010362 437 GKREGGDFVAACVSPKGEWIYCVGEDR--NLYCFSHQSG------------KLEHLMKVHEKDVIGVTHHPHRNLLATYG 502 (512)
Q Consensus 437 ~~~~~~~~~~~~~s~~g~~l~~g~~dg--~i~iwd~~~~------------~~~~~~~~h~~~v~~v~~~p~~~~l~s~~ 502 (512)
..++++.+++|--.+++.|+... .|.-=+.+.| +.+..+++|-++|++|+|||+|...+||+
T Consensus 231 ----e~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGG 306 (327)
T KOG0643|consen 231 ----ERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGG 306 (327)
T ss_pred ----cccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCC
Confidence 34689999999888888776432 2322233333 34556789999999999999999999999
Q ss_pred CCCeEEEe
Q 010362 503 EDCTMKLW 510 (512)
Q Consensus 503 ~dg~i~iW 510 (512)
.||.||+.
T Consensus 307 EDG~VR~h 314 (327)
T KOG0643|consen 307 EDGYVRLH 314 (327)
T ss_pred CCceEEEE
Confidence 99999984
No 35
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.9e-35 Score=278.20 Aligned_cols=289 Identities=25% Similarity=0.378 Sum_probs=256.4
Q ss_pred cCcCceEEEEECCCCCEEEEEeCCCeEEEEEcCCCeeeccccccccceeeccCcceeEEEEcCCCCeEEEEeCCCeEEEE
Q 010362 211 GTKSHAECARFSPDGQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQDGKIKVW 290 (512)
Q Consensus 211 ~h~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~vw 290 (512)
..+..|..++|+|...+++++-..|.|.+||..-+.++..+. .|.++|..++|+|++.++++|+.|-.|+||
T Consensus 7 skSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFd--------eHdGpVRgv~FH~~qplFVSGGDDykIkVW 78 (1202)
T KOG0292|consen 7 SKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFD--------EHDGPVRGVDFHPTQPLFVSGGDDYKIKVW 78 (1202)
T ss_pred cccccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhh--------ccCCccceeeecCCCCeEEecCCccEEEEE
Confidence 345678999999999999999999999999999988777554 499999999999999999999999999999
Q ss_pred EccCCeeeEEeccccccCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeeCCccceeEEEEcCCCCEEEEEeCCC
Q 010362 291 RIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDC 370 (512)
Q Consensus 291 d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 370 (512)
+..+.+++.++. +|-..|..+.|++.-..|+++|.|.+|+||+..+++++..+++|+..|.|..|+|....++++|-|.
T Consensus 79 nYk~rrclftL~-GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQ 157 (1202)
T KOG0292|consen 79 NYKTRRCLFTLL-GHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQ 157 (1202)
T ss_pred ecccceehhhhc-cccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccc
Confidence 999999999997 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEeCCCCceeeecCC-----------------------CCCCCCCCceeEEEEEcCCCCCeEEEEcCCCcEEEEecC
Q 010362 371 TVKVWDLKSTDCLQTFKP-----------------------PPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQ 427 (512)
Q Consensus 371 ~i~iwd~~~~~~~~~~~~-----------------------~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~~~~~ 427 (512)
+|++||+...+....-+. ...+.+|+..|+-++|+|.. .++++|+.|..|++|.+.
T Consensus 158 TVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTl-pliVSG~DDRqVKlWrmn 236 (1202)
T KOG0292|consen 158 TVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTL-PLIVSGADDRQVKLWRMN 236 (1202)
T ss_pred eEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCc-ceEEecCCcceeeEEEec
Confidence 999999864322111110 11245788999999999988 899999999999999999
Q ss_pred CeEEEEeeCCcccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCeeEEeccccCCCeEEEEEcCCCCeEEEEECCCeE
Q 010362 428 GQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPHRNLLATYGEDCTM 507 (512)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~~~dg~i 507 (512)
............|...+.++-|+|..+.|++.++|+.|++||+...+.++++....+.-+.++-+|..+++|.|-+.| +
T Consensus 237 etKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrrendRFW~laahP~lNLfAAgHDsG-m 315 (1202)
T KOG0292|consen 237 ETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRRENDRFWILAAHPELNLFAAGHDSG-M 315 (1202)
T ss_pred cccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccccceeeeeccCCeEEEEEecCCcceeeeecCCc-e
Confidence 766666666666788899999999999999999999999999999999999987788999999999999998776555 4
Q ss_pred EEe
Q 010362 508 KLW 510 (512)
Q Consensus 508 ~iW 510 (512)
.||
T Consensus 316 ~VF 318 (1202)
T KOG0292|consen 316 IVF 318 (1202)
T ss_pred EEE
Confidence 444
No 36
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=2e-35 Score=277.33 Aligned_cols=202 Identities=22% Similarity=0.412 Sum_probs=190.6
Q ss_pred ecCcCceEEEEECCCCCEEEEEeCCCeEEEEEcCCCeeeccccccccceeeccCcceeEEEEcCCCCeEEEEeCCCeEEE
Q 010362 210 FGTKSHAECARFSPDGQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQDGKIKV 289 (512)
Q Consensus 210 ~~h~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~v 289 (512)
.||.++|..+.|+|+.++|+++|.|++|++|.+.+....- .+.||..+|.++.|+|-|-++||||.|++.++
T Consensus 448 ~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V--------~y~GH~~PVwdV~F~P~GyYFatas~D~tArL 519 (707)
T KOG0263|consen 448 YGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLV--------IYKGHLAPVWDVQFAPRGYYFATASHDQTARL 519 (707)
T ss_pred ecCCCceeeeeecccccceeeccCCcceeeeecccceeEE--------EecCCCcceeeEEecCCceEEEecCCCceeee
Confidence 5999999999999999999999999999999999877654 45679999999999999999999999999999
Q ss_pred EEccCCeeeEEeccccccCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeeCCccceeEEEEcCCCCEEEEEeCC
Q 010362 290 WRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSD 369 (512)
Q Consensus 290 wd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 369 (512)
|......+.+.+. +|-+.|.|+.|+|+.+++++||.|.+|++||+.+|..++.|.||.++|.+++|+|+|.+|++|+.|
T Consensus 520 Ws~d~~~PlRifa-ghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed 598 (707)
T KOG0263|consen 520 WSTDHNKPLRIFA-GHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDED 598 (707)
T ss_pred eecccCCchhhhc-ccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccC
Confidence 9999999888886 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEeCCCCceeeecCCCCCCCCCCceeEEEEEcCCCCCeEEEEcCCCcEEEEecC
Q 010362 370 CTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQ 427 (512)
Q Consensus 370 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~~~~~ 427 (512)
|.|.+||+.+++.+..+. +|.+.|.++.|+.++ ..+++++.|..|++||+.
T Consensus 599 ~~I~iWDl~~~~~v~~l~------~Ht~ti~SlsFS~dg-~vLasgg~DnsV~lWD~~ 649 (707)
T KOG0263|consen 599 GLIKIWDLANGSLVKQLK------GHTGTIYSLSFSRDG-NVLASGGADNSVRLWDLT 649 (707)
T ss_pred CcEEEEEcCCCcchhhhh------cccCceeEEEEecCC-CEEEecCCCCeEEEEEch
Confidence 999999999998877765 678899999999988 899999999999999987
No 37
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.9e-35 Score=266.28 Aligned_cols=282 Identities=21% Similarity=0.338 Sum_probs=255.1
Q ss_pred cCcCceEEEEECCCCCEEEEEeCCCeEEEEEcCCCeeeccccccccceeeccCcceeEEEEcCCCCeEEEEeCCCeEEEE
Q 010362 211 GTKSHAECARFSPDGQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQDGKIKVW 290 (512)
Q Consensus 211 ~h~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~vw 290 (512)
.++..|.|+.|+|...+++++-.+|.|.|||.++....+.+.. ...+|++..|-+..+++++|+.|..|+||
T Consensus 11 ~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV--------~~~PvRa~kfiaRknWiv~GsDD~~IrVf 82 (794)
T KOG0276|consen 11 SRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEV--------SEVPVRAAKFIARKNWIVTGSDDMQIRVF 82 (794)
T ss_pred ccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeee--------cccchhhheeeeccceEEEecCCceEEEE
Confidence 5888999999999999999999999999999999988876654 67899999999999999999999999999
Q ss_pred EccCCeeeEEeccccccCeEEEEEecCCCEEEEEeCCCcEEEEeCCCC-ceeEEeeCCccceeEEEEcC-CCCEEEEEeC
Q 010362 291 RIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSG-KLLKEFRGHSSYVNDAIFTN-DGSRVVTASS 368 (512)
Q Consensus 291 d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~i~d~~~~-~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~ 368 (512)
+..+++.+..+. .|...|.+++.+|...+++++|.|-+|++||.+.+ .+.+++.+|...|.+++|+| |.+.+++++-
T Consensus 83 nynt~ekV~~Fe-AH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sL 161 (794)
T KOG0276|consen 83 NYNTGEKVKTFE-AHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASL 161 (794)
T ss_pred ecccceeeEEee-ccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeec
Confidence 999999999998 99999999999999999999999999999999765 67889999999999999999 6778999999
Q ss_pred CCcEEEEeCCCCceeeecCCCCCCCCCCceeEEEEEcCCC-CCeEEEEcCCCcEEEEecCCeEEEEeeCCcccCCcEEEE
Q 010362 369 DCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKN-PDHIVVCNKTSSIYIMTLQGQVVKSFSSGKREGGDFVAA 447 (512)
Q Consensus 369 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 447 (512)
|++|++|.+.+..+..++. +|...|+++.+.+.+ ..++++|+.|..+++||.+.+.+.+...+ |...+..+
T Consensus 162 DrTVKVWslgs~~~nfTl~------gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeG--Ht~Nvs~v 233 (794)
T KOG0276|consen 162 DRTVKVWSLGSPHPNFTLE------GHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEG--HTNNVSFV 233 (794)
T ss_pred cccEEEEEcCCCCCceeee------ccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhc--ccccceEE
Confidence 9999999999887777765 788999999998875 45899999999999999996654444333 35568999
Q ss_pred EECCCCCEEEEEeCCCeEEEEEcCCCeeEEeccccCCCeEEEEEcCCCCeEEEEECCCeEEE
Q 010362 448 CVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPHRNLLATYGEDCTMKL 509 (512)
Q Consensus 448 ~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~~~dg~i~i 509 (512)
+|+|.-..+++|++||+++||+..+-++..++.-.-..|.||+-.+.++.++.|.+.|.|.+
T Consensus 234 ~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k~~~~i~vG~Deg~i~v 295 (794)
T KOG0276|consen 234 FFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNYGLERVWCIAAHKGDGKIAVGFDEGSVTV 295 (794)
T ss_pred EecCCCcEEEEecCCccEEEecCcceehhhhhhcCCceEEEEeecCCCCeEEEeccCCcEEE
Confidence 99999999999999999999999999999999888899999999998888999999988754
No 38
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.3e-33 Score=233.28 Aligned_cols=284 Identities=23% Similarity=0.361 Sum_probs=240.5
Q ss_pred CcCceEEEEECCCCCEEEEEeCCCeEEEEEcCCCeeeccccccccceeeccCcceeEEEEcCCCCeEEEEeC--CCeEEE
Q 010362 212 TKSHAECARFSPDGQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQ--DGKIKV 289 (512)
Q Consensus 212 h~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~--dg~i~v 289 (512)
..+.|.++.|+++|.++++++.|.+++|||..+++..+.+.. +...|..++|....+.++.++. |.+|+.
T Consensus 13 ~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~s--------kkyG~~~~~Fth~~~~~i~sStk~d~tIry 84 (311)
T KOG1446|consen 13 TNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINS--------KKYGVDLACFTHHSNTVIHSSTKEDDTIRY 84 (311)
T ss_pred CCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeec--------ccccccEEEEecCCceEEEccCCCCCceEE
Confidence 567899999999999999999999999999999988776653 6678888999887777777776 889999
Q ss_pred EEccCCeeeEEeccccccCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeeCCccceeEEEEcCCCCEEEEEeCC
Q 010362 290 WRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSD 369 (512)
Q Consensus 290 wd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 369 (512)
.++.+.+.++.+. +|...|.+++.+|-+..+++++.|++|++||++..++...+.....++ ++|+|+|-++|++...
T Consensus 85 Lsl~dNkylRYF~-GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~pi--~AfDp~GLifA~~~~~ 161 (311)
T KOG1446|consen 85 LSLHDNKYLRYFP-GHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRPI--AAFDPEGLIFALANGS 161 (311)
T ss_pred EEeecCceEEEcC-CCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCCcc--eeECCCCcEEEEecCC
Confidence 9999999999997 999999999999999999999999999999999888877776544444 7999999999999888
Q ss_pred CcEEEEeCCCC--ceeeecCCCCCCCCCCceeEEEEEcCCCCCeEEEEcCCCcEEEEecC-CeEEEEeeCCcccCCcEEE
Q 010362 370 CTVKVWDLKST--DCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQ-GQVVKSFSSGKREGGDFVA 446 (512)
Q Consensus 370 g~i~iwd~~~~--~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~ 446 (512)
+.|++||+|+. .+..++.... ......+.+.|+|++ +.++.++..+.+++.|.- |.....+............
T Consensus 162 ~~IkLyD~Rs~dkgPF~tf~i~~---~~~~ew~~l~FS~dG-K~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~ 237 (311)
T KOG1446|consen 162 ELIKLYDLRSFDKGPFTTFSITD---NDEAEWTDLEFSPDG-KSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLS 237 (311)
T ss_pred CeEEEEEecccCCCCceeEccCC---CCccceeeeEEcCCC-CEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCccee
Confidence 89999999974 3334443332 346788999999999 888888899999999875 6666666665544444468
Q ss_pred EEECCCCCEEEEEeCCCeEEEEEcCCCeeEEeccc-cCCCeEEEEEcCCCCeEEEEECCCeEEEecC
Q 010362 447 ACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKV-HEKDVIGVTHHPHRNLLATYGEDCTMKLWKP 512 (512)
Q Consensus 447 ~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~-h~~~v~~v~~~p~~~~l~s~~~dg~i~iW~~ 512 (512)
.+|+||++++++|+.||+|++|++++|+.+..+.+ +.+++.++.|+|...+++|++ ..+.+|=|
T Consensus 238 a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa~--s~l~fw~p 302 (311)
T KOG1446|consen 238 ATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSAS--SNLVFWLP 302 (311)
T ss_pred EEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeeecC--ceEEEEec
Confidence 89999999999999999999999999999999988 689999999999988888775 47888854
No 39
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=6e-33 Score=248.45 Aligned_cols=290 Identities=19% Similarity=0.289 Sum_probs=246.6
Q ss_pred EecCcCceEEEEECCCCCEEEEEeCCCeEEEEEcCCCeeeccccccccceeeccCcceeEEEEcCCCCeEEEEeCC--Ce
Q 010362 209 KFGTKSHAECARFSPDGQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQD--GK 286 (512)
Q Consensus 209 ~~~h~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d--g~ 286 (512)
-.+|...++-..|||.|-|+|+|...|+|+|||....+.+-.. .+..-.++|..++|++|++.|+..++. ..
T Consensus 55 YtEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKn------ef~v~aG~I~Di~Wd~ds~RI~avGEGrerf 128 (603)
T KOG0318|consen 55 YTEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKN------EFQVLAGPIKDISWDFDSKRIAAVGEGRERF 128 (603)
T ss_pred eccccceeEEEEeCCCceEEeecCCcCcEEEEeccCcceeeee------eeeecccccccceeCCCCcEEEEEecCccce
Confidence 3489999999999999999999999999999998664433222 233367899999999999998887643 23
Q ss_pred EEEEEccCCeeeEEeccccccCeEEEEEecCCC-EEEEEeCCCcEEEEeCCCCceeEEeeCCccceeEEEEcCCCCEEEE
Q 010362 287 IKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGS-QILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVT 365 (512)
Q Consensus 287 i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 365 (512)
.+++-.++|..+..+. +|...|.++.|-|... ++++|+.|++|.+|+=...+...+++.|...|.|+.|+|||.++++
T Consensus 129 g~~F~~DSG~SvGei~-GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat 207 (603)
T KOG0318|consen 129 GHVFLWDSGNSVGEIT-GHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFAT 207 (603)
T ss_pred eEEEEecCCCccceee-ccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEE
Confidence 3444445777788887 9999999999998654 6899999999999987666777788889999999999999999999
Q ss_pred EeCCCcEEEEeCCCCceeeecCCCCCCCCCCceeEEEEEcCCCCCeEEEEcCCCcEEEEecC-CeEEEEeeCCcccCCcE
Q 010362 366 ASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQ-GQVVKSFSSGKREGGDF 444 (512)
Q Consensus 366 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~~ 444 (512)
++.||+|.+||-.+++.+..+... .+|.+.|.++.|+|++ ..+++++.|.++++||.. +..++.+.....-....
T Consensus 208 ~gsDgki~iyDGktge~vg~l~~~---~aHkGsIfalsWsPDs-~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqq 283 (603)
T KOG0318|consen 208 AGSDGKIYIYDGKTGEKVGELEDS---DAHKGSIFALSWSPDS-TQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQ 283 (603)
T ss_pred ecCCccEEEEcCCCccEEEEecCC---CCccccEEEEEECCCC-ceEEEecCCceEEEEEeeccceEEEeecCCchhceE
Confidence 999999999999999999888753 4799999999999998 899999999999999998 55566666554433344
Q ss_pred EEEEECCCCCEEEEEeCCCeEEEEEcCCCeeEEeccccCCCeEEEEEcCCCCeEEEEECCCeEEEec
Q 010362 445 VAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPHRNLLATYGEDCTMKLWK 511 (512)
Q Consensus 445 ~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~~~dg~i~iW~ 511 (512)
..+.|- ...|++.+.+|.|.+++.....++..+.+|...|+++..+|++.+|+||+.||.|.-|+
T Consensus 284 vG~lWq--kd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~ 348 (603)
T KOG0318|consen 284 VGCLWQ--KDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWD 348 (603)
T ss_pred EEEEEe--CCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEe
Confidence 455555 66899999999999999999999999999999999999999999999999999999997
No 40
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.9e-34 Score=273.17 Aligned_cols=265 Identities=22% Similarity=0.380 Sum_probs=214.8
Q ss_pred cccceEEEecCcCceEEEEECCCCCEEEEEeCCCeEEEEEcCCCee----------------------------------
Q 010362 202 TTLSHTIKFGTKSHAECARFSPDGQFLVSCSFDGFIEVWDYLSGKL---------------------------------- 247 (512)
Q Consensus 202 ~~~~~~~~~~h~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~---------------------------------- 247 (512)
....+.+...|++.|+++.||+||+|||+||.||.|+||.+...+.
T Consensus 256 l~~~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~ 335 (712)
T KOG0283|consen 256 LTVVQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSR 335 (712)
T ss_pred eEEeeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccc
Confidence 3444555568999999999999999999999999999998755000
Q ss_pred ------------------eccccccccceeeccCcceeEEEEcCCCCeEEEEeCCCeEEEEEccCCeeeEEeccccccCe
Q 010362 248 ------------------KKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGV 309 (512)
Q Consensus 248 ------------------~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~i 309 (512)
...+...|...+.||.+.|..+.||.++ +|++++.|.+|++|++...++++.|. |...|
T Consensus 336 ~s~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~~~CL~~F~--HndfV 412 (712)
T KOG0283|consen 336 TSSSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN-FLLSSSMDKTVRLWHPGRKECLKVFS--HNDFV 412 (712)
T ss_pred ccccccccCCccccCCCccccccccchhhhhccchhheecccccCC-eeEeccccccEEeecCCCcceeeEEe--cCCee
Confidence 0011223445788999999999999764 89999999999999999999999995 99999
Q ss_pred EEEEEec-CCCEEEEEeCCCcEEEEeCCCCceeEEeeCCccceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeecCC
Q 010362 310 TSLVFSR-DGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKP 388 (512)
Q Consensus 310 ~~~~~~~-~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 388 (512)
+|++|+| |.++|++|+-||.|++|++...+.+.-...+ .-|++++|.|+|+..+.|+.+|.+++|+....+....+..
T Consensus 413 TcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~-~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I 491 (712)
T KOG0283|consen 413 TCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLR-DLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHI 491 (712)
T ss_pred EEEEecccCCCcEeecccccceEEeecCcCeeEeehhhh-hhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeE
Confidence 9999999 7899999999999999999766665544434 6799999999999999999999999999998776554432
Q ss_pred CC--CCCCCCceeEEEEEcCCCCCeEEEEcCCCcEEEEecCCeE-EEEeeCCcccCCcEEEEEECCCCCEEEEEeCCCeE
Q 010362 389 PP--PLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQV-VKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNL 465 (512)
Q Consensus 389 ~~--~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~dg~i 465 (512)
.. .-......|+++.+.|..+..+++.+.|..|+|+|.+... +..+.... ....-....|+.||++|+++++|..|
T Consensus 492 ~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~-n~~SQ~~Asfs~Dgk~IVs~seDs~V 570 (712)
T KOG0283|consen 492 RLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFR-NTSSQISASFSSDGKHIVSASEDSWV 570 (712)
T ss_pred eeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccc-cCCcceeeeEccCCCEEEEeecCceE
Confidence 21 1112223899999999998999999999999999997543 34444333 34445678888999999999999999
Q ss_pred EEEEcC
Q 010362 466 YCFSHQ 471 (512)
Q Consensus 466 ~iwd~~ 471 (512)
++|+..
T Consensus 571 YiW~~~ 576 (712)
T KOG0283|consen 571 YIWKND 576 (712)
T ss_pred EEEeCC
Confidence 999973
No 41
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=100.00 E-value=5.6e-34 Score=245.16 Aligned_cols=291 Identities=21% Similarity=0.344 Sum_probs=240.1
Q ss_pred ccccCccccceEEEecCcCceEEEEECCCCCEEEEEeCCCeEEEEEcCCCeeeccccccccceeeccCcceeEEEEcCCC
Q 010362 196 VEDMYPTTLSHTIKFGTKSHAECARFSPDGQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDS 275 (512)
Q Consensus 196 ~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~ 275 (512)
+....|+++.+.+ -|.+.|.++... ++++++|++||.+++||.. |+... .+.||.++|.+++|.-.+
T Consensus 90 v~~~~aP~pl~~~--~hdDWVSsv~~~--~~~IltgsYDg~~riWd~~-Gk~~~--------~~~Ght~~ik~v~~v~~n 156 (423)
T KOG0313|consen 90 VEAITAPKPLQCF--LHDDWVSSVKGA--SKWILTGSYDGTSRIWDLK-GKSIK--------TIVGHTGPIKSVAWVIKN 156 (423)
T ss_pred EEecCCCCccccc--cchhhhhhhccc--CceEEEeecCCeeEEEecC-CceEE--------EEecCCcceeeeEEEecC
Confidence 3344566666665 699999999887 7899999999999999965 44333 456799999998886544
Q ss_pred C---eEEEEeCCCeEEEEEccCCeeeEEe---ccccccCeEEEEEecCCCEEEEEeCCCcEEEEeCC-------------
Q 010362 276 E---MLASGSQDGKIKVWRIRSGQCLRRL---ERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLK------------- 336 (512)
Q Consensus 276 ~---~l~s~~~dg~i~vwd~~~~~~~~~~---~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~i~d~~------------- 336 (512)
. .|++++.|.++++|..+.++..... ..+|...|.+++..++|..+++|+.|.++.+|+..
T Consensus 157 ~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~ 236 (423)
T KOG0313|consen 157 SSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNR 236 (423)
T ss_pred CccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchh
Confidence 3 5999999999999999877543221 12899999999999999999999999999999932
Q ss_pred ------------CCceeEEeeCCccceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeecCCCCCCCCCCceeEEEEE
Q 010362 337 ------------SGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHL 404 (512)
Q Consensus 337 ------------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 404 (512)
++.++.++.+|..+|.++.|++ ...+++++.|.+|+.||+.++....++.. ..+.+++..
T Consensus 237 rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~-------~ksl~~i~~ 308 (423)
T KOG0313|consen 237 RRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTT-------NKSLNCISY 308 (423)
T ss_pred hhhhhhhhhcccccCceEEecccccceeeEEEcC-CCceEeecccceEEEEEeecccceeeeec-------CcceeEeec
Confidence 1235667889999999999998 56899999999999999999988877763 457899999
Q ss_pred cCCCCCeEEEEcCCCcEEEEecC---CeEEEEeeCCcccCCcEEEEEECCCCC-EEEEEeCCCeEEEEEcCCCe-eEEec
Q 010362 405 FPKNPDHIVVCNKTSSIYIMTLQ---GQVVKSFSSGKREGGDFVAACVSPKGE-WIYCVGEDRNLYCFSHQSGK-LEHLM 479 (512)
Q Consensus 405 ~~~~~~~l~~~~~~~~i~~~~~~---~~~~~~~~~~~~~~~~~~~~~~s~~g~-~l~~g~~dg~i~iwd~~~~~-~~~~~ 479 (512)
+|.. .++++|+.|..+++||.+ +..+.....+ |..-|..+.|+|... .+++|+.|+++++||+++.+ ++..+
T Consensus 309 ~~~~-~Ll~~gssdr~irl~DPR~~~gs~v~~s~~g--H~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI 385 (423)
T KOG0313|consen 309 SPLS-KLLASGSSDRHIRLWDPRTGDGSVVSQSLIG--HKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDI 385 (423)
T ss_pred cccc-ceeeecCCCCceeecCCCCCCCceeEEeeec--chhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceee
Confidence 9966 999999999999999998 2333333332 456889999999655 56788899999999999887 99999
Q ss_pred cccCCCeEEEEEcCCCCeEEEEECCCeEEEec
Q 010362 480 KVHEKDVIGVTHHPHRNLLATYGEDCTMKLWK 511 (512)
Q Consensus 480 ~~h~~~v~~v~~~p~~~~l~s~~~dg~i~iW~ 511 (512)
.+|...|.++.|+ ++..++|||.|.+|+|++
T Consensus 386 ~~h~DKvl~vdW~-~~~~IvSGGaD~~l~i~~ 416 (423)
T KOG0313|consen 386 AGHNDKVLSVDWN-EGGLIVSGGADNKLRIFK 416 (423)
T ss_pred ccCCceEEEEecc-CCceEEeccCcceEEEec
Confidence 9999999999997 567899999999999975
No 42
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=1.3e-34 Score=246.99 Aligned_cols=245 Identities=21% Similarity=0.366 Sum_probs=224.4
Q ss_pred cccceeeccCcceeEEEEcCCCCeEEEEeCCCeEEEEEccCCeeeEEeccccccCeEEEEEecCCCEEEEEeCCCcEEEE
Q 010362 254 QADETFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIH 333 (512)
Q Consensus 254 ~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~i~ 333 (512)
.....+.+|.+.|.|+++.|-+.+|++|+.|++|+|||+.+|+...++. +|...|..+++++-..|+++++.|+.|+.|
T Consensus 142 Kl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~Lkltlt-Ghi~~vr~vavS~rHpYlFs~gedk~VKCw 220 (460)
T KOG0285|consen 142 KLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLT-GHIETVRGVAVSKRHPYLFSAGEDKQVKCW 220 (460)
T ss_pred eehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeec-chhheeeeeeecccCceEEEecCCCeeEEE
Confidence 3445778899999999999999999999999999999999999999987 899999999999999999999999999999
Q ss_pred eCCCCceeEEeeCCccceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeecCCCCCCCCCCceeEEEEEcCCCCCeEE
Q 010362 334 GLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIV 413 (512)
Q Consensus 334 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~ 413 (512)
|++..+.++.+.+|-+.|.|++.+|.-..|++|+.|.++++||+++...+..+. +|..+|.++.+.|.+ ..++
T Consensus 221 DLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~------GH~~~V~~V~~~~~d-pqvi 293 (460)
T KOG0285|consen 221 DLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLS------GHTNPVASVMCQPTD-PQVI 293 (460)
T ss_pred echhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEec------CCCCcceeEEeecCC-CceE
Confidence 999999999999999999999999999999999999999999999998887765 788999999999988 6789
Q ss_pred EEcCCCcEEEEecC-CeEEEEeeCCcccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCeeEEeccccCCCeEEEEEc
Q 010362 414 VCNKTSSIYIMTLQ-GQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHH 492 (512)
Q Consensus 414 ~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~ 492 (512)
+|+.|++|++||+. |+.......+ ...+.+++.+|....+++++.| .|..|++..|..+..+.+|...|++++.+
T Consensus 294 t~S~D~tvrlWDl~agkt~~tlt~h---kksvral~lhP~e~~fASas~d-nik~w~~p~g~f~~nlsgh~~iintl~~n 369 (460)
T KOG0285|consen 294 TGSHDSTVRLWDLRAGKTMITLTHH---KKSVRALCLHPKENLFASASPD-NIKQWKLPEGEFLQNLSGHNAIINTLSVN 369 (460)
T ss_pred EecCCceEEEeeeccCceeEeeecc---cceeeEEecCCchhhhhccCCc-cceeccCCccchhhccccccceeeeeeec
Confidence 99999999999998 5655555543 4568999999999999988876 68999999999999999999999999998
Q ss_pred CCCCeEEEEECCCeEEEec
Q 010362 493 PHRNLLATYGEDCTMKLWK 511 (512)
Q Consensus 493 p~~~~l~s~~~dg~i~iW~ 511 (512)
.|+ ++++|++.|.+.+||
T Consensus 370 sD~-v~~~G~dng~~~fwd 387 (460)
T KOG0285|consen 370 SDG-VLVSGGDNGSIMFWD 387 (460)
T ss_pred cCc-eEEEcCCceEEEEEe
Confidence 765 677999999999997
No 43
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=100.00 E-value=5.2e-35 Score=254.08 Aligned_cols=297 Identities=21% Similarity=0.362 Sum_probs=253.6
Q ss_pred ccccCccccceEEEecCcCceEEEEECCCCCEEEEEeCCCeEEEEEcCCCeeeccccccccceeeccCcceeEEEEcCCC
Q 010362 196 VEDMYPTTLSHTIKFGTKSHAECARFSPDGQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDS 275 (512)
Q Consensus 196 ~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~ 275 (512)
+.+..|......+. .|.+.+..+.|-++...|++|+.|..|++|++..++. ....++.|..++|+.+.|.+++
T Consensus 159 v~~~lpS~~~~~ld-~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~------~~~~tLaGs~g~it~~d~d~~~ 231 (459)
T KOG0288|consen 159 VEDTLPSRALFVLD-AHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKS------ELISTLAGSLGNITSIDFDSDN 231 (459)
T ss_pred hhcccchhhhhhhh-ccccccceeEEccCcchhhhcchhhhhhhhhcccchh------hhhhhhhccCCCcceeeecCCC
Confidence 34556666666665 8999999999999999999999999999999877651 2234666788999999999999
Q ss_pred CeEEEEeCCCeEEEEEccCCeeeEEeccccccCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeeCCccceeEEE
Q 010362 276 EMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAI 355 (512)
Q Consensus 276 ~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~ 355 (512)
+++++++.|+.+++|++...+...++. +|...|+++.|......+++|+.|.+|+.||+....+.+++-. .+.+.+|.
T Consensus 232 ~~~iAas~d~~~r~Wnvd~~r~~~TLs-GHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~-~S~cnDI~ 309 (459)
T KOG0288|consen 232 KHVIAASNDKNLRLWNVDSLRLRHTLS-GHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLP-GSQCNDIV 309 (459)
T ss_pred ceEEeecCCCceeeeeccchhhhhhhc-ccccceeeehhhccccceeeccccchhhhhhhhhhheeccccc-cccccceE
Confidence 999999999999999999999999997 7999999999998777799999999999999998888777653 34467777
Q ss_pred EcCCCCEEEEEeCCCcEEEEeCCCCceeeecCCCCCCCCCCceeEEEEEcCCCCCeEEEEcCCCcEEEEecCCeEEEEee
Q 010362 356 FTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQVVKSFS 435 (512)
Q Consensus 356 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~ 435 (512)
.+ ...+++|..|++|++||.++..+....+ ..+.|+++..++++ ..+.+++.|..+.+.|+++..+....
T Consensus 310 ~~--~~~~~SgH~DkkvRfwD~Rs~~~~~sv~-------~gg~vtSl~ls~~g-~~lLsssRDdtl~viDlRt~eI~~~~ 379 (459)
T KOG0288|consen 310 CS--ISDVISGHFDKKVRFWDIRSADKTRSVP-------LGGRVTSLDLSMDG-LELLSSSRDDTLKVIDLRTKEIRQTF 379 (459)
T ss_pred ec--ceeeeecccccceEEEeccCCceeeEee-------cCcceeeEeeccCC-eEEeeecCCCceeeeecccccEEEEe
Confidence 76 4568899999999999999998887765 34589999999988 66777799999999999976555443
Q ss_pred CC--cccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCeeEEeccccCCC--eEEEEEcCCCCeEEEEECCCeEEEec
Q 010362 436 SG--KREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKD--VIGVTHHPHRNLLATYGEDCTMKLWK 511 (512)
Q Consensus 436 ~~--~~~~~~~~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~--v~~v~~~p~~~~l~s~~~dg~i~iW~ 511 (512)
.. .......+.++|||++.|+++|+.||.|+||++.++++...+...... |++++|+|.|..+++++.++.+.+|.
T Consensus 380 sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 380 SAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLWT 459 (459)
T ss_pred eccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEecC
Confidence 32 223456889999999999999999999999999999999998766554 99999999999999999999999994
No 44
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=7.8e-34 Score=264.00 Aligned_cols=291 Identities=21% Similarity=0.358 Sum_probs=248.6
Q ss_pred CccccceEEEecCcCceEEEEE-CCCCCEEEEEeCCCeEEEEEcCCCeeeccccccccceeeccCcceeEEEEcCCCCeE
Q 010362 200 YPTTLSHTIKFGTKSHAECARF-SPDGQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEML 278 (512)
Q Consensus 200 ~~~~~~~~~~~~h~~~v~~~~~-s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l 278 (512)
....+...+. |..+.|..++| .|+.++||+++..+.+++|++.+..+. .+.||+..|.++....+|.+|
T Consensus 311 ~~l~i~k~iv-G~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~---------ii~GH~e~vlSL~~~~~g~ll 380 (775)
T KOG0319|consen 311 DELTIVKQIV-GYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQ---------IIPGHTEAVLSLDVWSSGDLL 380 (775)
T ss_pred cccEEehhhc-CCchhheeeeecCCccceEEEEeCCCceEEEecCCCceE---------EEeCchhheeeeeecccCcEE
Confidence 3344444454 88889999887 578899999999999999988776543 567899999999977778899
Q ss_pred EEEeCCCeEEEEEccCCe----eeEEeccccccCeEEEEEecCC-CEEEEEeCCCcEEEEeCCCCce-----eE----Ee
Q 010362 279 ASGSQDGKIKVWRIRSGQ----CLRRLERAHSEGVTSLVFSRDG-SQILSTSFDSTARIHGLKSGKL-----LK----EF 344 (512)
Q Consensus 279 ~s~~~dg~i~vwd~~~~~----~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~v~i~d~~~~~~-----~~----~~ 344 (512)
+||+.|.++++|.++++. ++.... +|.+.|.+++++..+ ..|+++|.|+++++|++...+. .. +.
T Consensus 381 at~sKD~svilWr~~~~~~~~~~~a~~~-gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~ 459 (775)
T KOG0319|consen 381 ATGSKDKSVILWRLNNNCSKSLCVAQAN-GHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTE 459 (775)
T ss_pred EEecCCceEEEEEecCCcchhhhhhhhc-ccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHH
Confidence 999999999999885443 233343 899999999997754 6789999999999999975221 11 23
Q ss_pred eCCccceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeecCCCCCCCCCCceeEEEEEcCCCCCeEEEEcCCCcEEEE
Q 010362 345 RGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIM 424 (512)
Q Consensus 345 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~~ 424 (512)
..|...|++++.+|+.+.++||+.|.+.+||++.......++. +|...+.++.|+|.+ ..+++++.|.+|++|
T Consensus 460 ~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLs------GH~RGvw~V~Fs~~d-q~laT~SgD~TvKIW 532 (775)
T KOG0319|consen 460 RAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLS------GHTRGVWCVSFSKND-QLLATCSGDKTVKIW 532 (775)
T ss_pred HhhcccccceEecCCCceEEecccccceeeecccCceEEEEee------CCccceEEEEecccc-ceeEeccCCceEEEE
Confidence 4699999999999999999999999999999999877777765 788999999999987 899999999999999
Q ss_pred ecCCe-EEEEeeCCcccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCeeEEeccccCCCeEEEEEcCCCCeEEEEEC
Q 010362 425 TLQGQ-VVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPHRNLLATYGE 503 (512)
Q Consensus 425 ~~~~~-~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~~~ 503 (512)
.+... ..+++.. |...|..+.|-.+|..|++++.||.+++|++++++++.++.+|.+.|.+++.+|...+++||+.
T Consensus 533 ~is~fSClkT~eG---H~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H~DrvWaL~~~~~~~~~~tgg~ 609 (775)
T KOG0319|consen 533 SISTFSCLKTFEG---HTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDAHNDRVWALSVSPLLDMFVTGGG 609 (775)
T ss_pred EeccceeeeeecC---ccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhhccceeEEEeecCccceeEecCC
Confidence 99954 5555544 3567999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEec
Q 010362 504 DCTMKLWK 511 (512)
Q Consensus 504 dg~i~iW~ 511 (512)
||.|.+|+
T Consensus 610 Dg~i~~wk 617 (775)
T KOG0319|consen 610 DGRIIFWK 617 (775)
T ss_pred CeEEEEee
Confidence 99999996
No 45
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=6e-33 Score=227.24 Aligned_cols=281 Identities=21% Similarity=0.316 Sum_probs=240.4
Q ss_pred cCcCceEEEEECCCCCEEEEEeCCCeEEEEEcCCCeeeccccccccceeeccCcceeEEEEcC-CCCeEEEEeCCCeEEE
Q 010362 211 GTKSHAECARFSPDGQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSR-DSEMLASGSQDGKIKV 289 (512)
Q Consensus 211 ~h~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~-~~~~l~s~~~dg~i~v 289 (512)
+|...|.+++|+-+|..|++|+.|+++.+|+++..+..... ...+|.+.|-.++|+| ....+++++.|.+|++
T Consensus 18 ~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~------~~~gh~~svdql~w~~~~~d~~atas~dk~ir~ 91 (313)
T KOG1407|consen 18 GHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKEL------VYRGHTDSVDQLCWDPKHPDLFATASGDKTIRI 91 (313)
T ss_pred hhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhh------cccCCCcchhhheeCCCCCcceEEecCCceEEE
Confidence 88999999999999999999999999999999887544333 4567999999999998 5678999999999999
Q ss_pred EEccCCeeeEEeccccccCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeeCCccceeEEEEcCCCCEEEEEeCC
Q 010362 290 WRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSD 369 (512)
Q Consensus 290 wd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 369 (512)
||++.+++...+. ....-.-+.|+|+|.++++++.|..|.+.|.++.+.....+ ....++-++|+.+++.++.....
T Consensus 92 wd~r~~k~~~~i~--~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~-~~~e~ne~~w~~~nd~Fflt~Gl 168 (313)
T KOG1407|consen 92 WDIRSGKCTARIE--TKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQ-FKFEVNEISWNNSNDLFFLTNGL 168 (313)
T ss_pred EEeccCcEEEEee--ccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhc-ccceeeeeeecCCCCEEEEecCC
Confidence 9999999998886 34445568899999999999999999999999888877665 34558889999888888888888
Q ss_pred CcEEEEeCCCCceeeecCCCCCCCCCCceeEEEEEcCCCCCeEEEEcCCCcEEEEecCCeEEEEeeCCcccCCcEEEEEE
Q 010362 370 CTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQVVKSFSSGKREGGDFVAACV 449 (512)
Q Consensus 370 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (512)
|+|.|......+++.+++ .|.....++.|+|++ .++++|+.|..+.+||++.-...+... ...-+|..+.|
T Consensus 169 G~v~ILsypsLkpv~si~------AH~snCicI~f~p~G-ryfA~GsADAlvSLWD~~ELiC~R~is--RldwpVRTlSF 239 (313)
T KOG1407|consen 169 GCVEILSYPSLKPVQSIK------AHPSNCICIEFDPDG-RYFATGSADALVSLWDVDELICERCIS--RLDWPVRTLSF 239 (313)
T ss_pred ceEEEEeccccccccccc------cCCcceEEEEECCCC-ceEeeccccceeeccChhHhhhheeec--cccCceEEEEe
Confidence 999999888776666655 677889999999999 999999999999999998544333222 23567999999
Q ss_pred CCCCCEEEEEeCCCeEEEEEcCCCeeEEeccccCCCeEEEEEcCCCCeEEEEECC---------CeEEEe
Q 010362 450 SPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPHRNLLATYGED---------CTMKLW 510 (512)
Q Consensus 450 s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~~~d---------g~i~iW 510 (512)
|.||++|++|++|..|-|=++++|..+..++ +.++...|+|||...+||-+++| |.|+++
T Consensus 240 S~dg~~lASaSEDh~IDIA~vetGd~~~eI~-~~~~t~tVAWHPk~~LLAyA~ddk~~d~~reag~vKiF 308 (313)
T KOG1407|consen 240 SHDGRMLASASEDHFIDIAEVETGDRVWEIP-CEGPTFTVAWHPKRPLLAYACDDKDGDSNREAGTVKIF 308 (313)
T ss_pred ccCcceeeccCccceEEeEecccCCeEEEee-ccCCceeEEecCCCceeeEEecCCCCccccccceeEEe
Confidence 9999999999999999999999999998887 78899999999999999977754 566665
No 46
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=8.2e-34 Score=228.76 Aligned_cols=244 Identities=20% Similarity=0.330 Sum_probs=212.8
Q ss_pred ceeeccCcceeEEEEcCCCCeEEEEeCCCeEEEEEccCCeeeEEeccccccCeEEEEEecCCCEEEEEeCCCcEEEEeCC
Q 010362 257 ETFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLK 336 (512)
Q Consensus 257 ~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~i~d~~ 336 (512)
..+..|.++|..+.|+-||+|.++|+.|.+|++|+...|.+++++. +|...|..++.+.|+..|++|+.|..+.+||+.
T Consensus 11 ~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYs-ghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~ 89 (307)
T KOG0316|consen 11 SILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYS-GHGHEVLDAALSSDNSKFASCGGDKAVQVWDVN 89 (307)
T ss_pred eeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeec-CCCceeeeccccccccccccCCCCceEEEEEcc
Confidence 3556799999999999999999999999999999999999999997 999999999999999999999999999999999
Q ss_pred CCceeEEeeCCccceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeecCCCCCCCCCCceeEEEEEcCCCCCeEEEEc
Q 010362 337 SGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCN 416 (512)
Q Consensus 337 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~ 416 (512)
+|+..+.+.+|.+.|+.+.|+.+...+++|+-|.++++||.++.. +.+...+......|.++.+.. ..+++|+
T Consensus 90 TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s----~ePiQildea~D~V~Si~v~~---heIvaGS 162 (307)
T KOG0316|consen 90 TGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRS----FEPIQILDEAKDGVSSIDVAE---HEIVAGS 162 (307)
T ss_pred cCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCC----CCccchhhhhcCceeEEEecc---cEEEeec
Confidence 999999999999999999999999999999999999999998753 222222233456788887754 7899999
Q ss_pred CCCcEEEEecCCeEEEEeeCCcccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCeeEEeccccCCCeE--EEEEcCC
Q 010362 417 KTSSIYIMTLQGQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVI--GVTHHPH 494 (512)
Q Consensus 417 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~--~v~~~p~ 494 (512)
.||+++.||++......-.. +.+|+++++++||+..++++.|+++++.|-.+|++++.+++|.+.-. ..+++..
T Consensus 163 ~DGtvRtydiR~G~l~sDy~----g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qs 238 (307)
T KOG0316|consen 163 VDGTVRTYDIRKGTLSSDYF----GHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQS 238 (307)
T ss_pred cCCcEEEEEeecceeehhhc----CCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeeccc
Confidence 99999999999444333222 45699999999999999999999999999999999999999976543 4456666
Q ss_pred CCeEEEEECCCeEEEecC
Q 010362 495 RNLLATYGEDCTMKLWKP 512 (512)
Q Consensus 495 ~~~l~s~~~dg~i~iW~~ 512 (512)
...+++||.||.|.+||.
T Consensus 239 dthV~sgSEDG~Vy~wdL 256 (307)
T KOG0316|consen 239 DTHVFSGSEDGKVYFWDL 256 (307)
T ss_pred ceeEEeccCCceEEEEEe
Confidence 679999999999999984
No 47
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=4.7e-33 Score=229.09 Aligned_cols=259 Identities=21% Similarity=0.351 Sum_probs=213.3
Q ss_pred cccccccC---ccccceEEEecCcCceEEEEECCCCCEEEEEeCCCeEEEEEcCCCeeeccccccccceeeccCcceeEE
Q 010362 193 KQDVEDMY---PTTLSHTIKFGTKSHAECARFSPDGQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCI 269 (512)
Q Consensus 193 ~~~~~~~~---~~~~~~~~~~~h~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l 269 (512)
...+|+.. .-.+...+..+|+..|.+++|+|.|++||+||.|.++.||.-..++ +....++.||...|.|+
T Consensus 38 ~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~e------fecv~~lEGHEnEVK~V 111 (312)
T KOG0645|consen 38 AVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGE------FECVATLEGHENEVKCV 111 (312)
T ss_pred eEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEeecCCCc------eeEEeeeeccccceeEE
Confidence 34445444 2345556667999999999999999999999999999999866554 23455788999999999
Q ss_pred EEcCCCCeEEEEeCCCeEEEEEccCC---eeeEEeccccccCeEEEEEecCCCEEEEEeCCCcEEEEeCC---CCceeEE
Q 010362 270 EFSRDSEMLASGSQDGKIKVWRIRSG---QCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLK---SGKLLKE 343 (512)
Q Consensus 270 ~~s~~~~~l~s~~~dg~i~vwd~~~~---~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~i~d~~---~~~~~~~ 343 (512)
+|+++|++||+|+.|++|-||.+..+ ++...+. +|...|..+.|+|...+|+++++|++|++|+-. ...+..+
T Consensus 112 aws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~-~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~t 190 (312)
T KOG0645|consen 112 AWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQ-EHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQT 190 (312)
T ss_pred EEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeec-cccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEE
Confidence 99999999999999999999999754 4556665 899999999999999999999999999999866 3367899
Q ss_pred eeCCccceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeecCCCCCCCCCCceeEEEEEcCCCCCeEEEEcCCCcEEE
Q 010362 344 FRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYI 423 (512)
Q Consensus 344 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~ 423 (512)
+.+|.+.|.+++|+|.|..|++++.|++++||-..+.- . ..|...++.+.|. ...+++++.|+.|++
T Consensus 191 l~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~~-----~-----~~~sr~~Y~v~W~---~~~IaS~ggD~~i~l 257 (312)
T KOG0645|consen 191 LDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTDL-----S-----GMHSRALYDVPWD---NGVIASGGGDDAIRL 257 (312)
T ss_pred ecCccceEEEEEecCCCceEEEecCCcceEeeeeccCc-----c-----hhcccceEeeeec---ccceEeccCCCEEEE
Confidence 99999999999999999999999999999999866321 1 1356788999998 379999999999999
Q ss_pred EecCCeEE----EEe-eCCcccCCcEEEEEECCC-CCEEEEEeCCCeEEEEEcC
Q 010362 424 MTLQGQVV----KSF-SSGKREGGDFVAACVSPK-GEWIYCVGEDRNLYCFSHQ 471 (512)
Q Consensus 424 ~~~~~~~~----~~~-~~~~~~~~~~~~~~~s~~-g~~l~~g~~dg~i~iwd~~ 471 (512)
+.....+. ..+ .....|...|+++.|.|. .+.|++|+.||.|++|.+.
T Consensus 258 f~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 258 FKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred EEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence 98763211 111 123345668999999995 7899999999999999864
No 48
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=4.3e-35 Score=249.10 Aligned_cols=268 Identities=22% Similarity=0.367 Sum_probs=224.0
Q ss_pred cCcCceEEEEECCCCCEEEEEeCCCeEEEEEcCCCeeeccccccccceeeccCcceeEEEEcCCCCeEEEEeCCCeEEEE
Q 010362 211 GTKSHAECARFSPDGQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQDGKIKVW 290 (512)
Q Consensus 211 ~h~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~vw 290 (512)
.....|.|+.+ |...+++|..|++|+|||.++-.+.. .+.||++.|.|+.|. .+.+++|+.|.+|++|
T Consensus 195 e~skgVYClQY--DD~kiVSGlrDnTikiWD~n~~~c~~--------~L~GHtGSVLCLqyd--~rviisGSSDsTvrvW 262 (499)
T KOG0281|consen 195 ENSKGVYCLQY--DDEKIVSGLRDNTIKIWDKNSLECLK--------ILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVW 262 (499)
T ss_pred ccCCceEEEEe--cchhhhcccccCceEEeccccHHHHH--------hhhcCCCcEEeeecc--ceEEEecCCCceEEEE
Confidence 35567999998 55679999999999999987765544 567899999999996 5599999999999999
Q ss_pred EccCCeeeEEeccccccCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCce---eEEeeCCccceeEEEEcCCCCEEEEEe
Q 010362 291 RIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKL---LKEFRGHSSYVNDAIFTNDGSRVVTAS 367 (512)
Q Consensus 291 d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~---~~~~~~~~~~v~~~~~~~~~~~l~~~~ 367 (512)
|+.+|+++.++. .|...|..+.|+ ..++++++.|.++.+||+.+... .+.+.+|...|+.+.|+. +++++++
T Consensus 263 Dv~tge~l~tli-hHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~--kyIVsAS 337 (499)
T KOG0281|consen 263 DVNTGEPLNTLI-HHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD--KYIVSAS 337 (499)
T ss_pred eccCCchhhHHh-hhcceeEEEEEe--CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeecccc--ceEEEec
Confidence 999999999997 899999999998 45999999999999999977643 345679999999999964 5999999
Q ss_pred CCCcEEEEeCCCCceeeecCCCCCCCCCCceeEEEEEcCCCCCeEEEEcCCCcEEEEecC-CeEEEEeeCCcccCCcEEE
Q 010362 368 SDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQ-GQVVKSFSSGKREGGDFVA 446 (512)
Q Consensus 368 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~ 446 (512)
.|.+|++|++.+++++.++. +|...|.++.+ ...++++|+.|.+|++||+. |..++.+..+ ..-+.+
T Consensus 338 gDRTikvW~~st~efvRtl~------gHkRGIAClQY---r~rlvVSGSSDntIRlwdi~~G~cLRvLeGH---EeLvRc 405 (499)
T KOG0281|consen 338 GDRTIKVWSTSTCEFVRTLN------GHKRGIACLQY---RDRLVVSGSSDNTIRLWDIECGACLRVLEGH---EELVRC 405 (499)
T ss_pred CCceEEEEeccceeeehhhh------cccccceehhc---cCeEEEecCCCceEEEEeccccHHHHHHhch---HHhhhh
Confidence 99999999999999988876 55566666554 44899999999999999999 4444444332 344667
Q ss_pred EEECCCCCEEEEEeCCCeEEEEEcCCCe---------eEEeccccCCCeEEEEEcCCCCeEEEEECCCeEEEec
Q 010362 447 ACVSPKGEWIYCVGEDRNLYCFSHQSGK---------LEHLMKVHEKDVIGVTHHPHRNLLATYGEDCTMKLWK 511 (512)
Q Consensus 447 ~~~s~~g~~l~~g~~dg~i~iwd~~~~~---------~~~~~~~h~~~v~~v~~~p~~~~l~s~~~dg~i~iW~ 511 (512)
+.| |.+.|++|+.||+|++||+..+. ++..+..|++.|..+.| |...+++++.|.+|.|||
T Consensus 406 iRF--d~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQF--D~fqIvsssHddtILiWd 475 (499)
T KOG0281|consen 406 IRF--DNKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQF--DEFQIISSSHDDTILIWD 475 (499)
T ss_pred eee--cCceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEee--cceEEEeccCCCeEEEEE
Confidence 777 57789999999999999998764 33455678999999999 567899999999999998
No 49
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=5.9e-34 Score=243.72 Aligned_cols=383 Identities=19% Similarity=0.306 Sum_probs=300.1
Q ss_pred cchhhHHHHHHHHHHhcChHHHHHHHHhhcCccccccccHHHHHhhhccCCchhhhhhhccccCChhHHHHHHHHHHHHH
Q 010362 5 IEARDVIKIVLQFCKENSLQQTFQTLQNECQVSLNTVDSIETFVADINSGRWDAILPQVAQLKLPRNKLEDLYEQIVLEM 84 (512)
Q Consensus 5 ~~~~e~~~li~q~L~e~G~~~t~~~l~~Es~~~~~~~~~~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~l~~~~~~e~ 84 (512)
=.++||++.|..++..+||.++..++-+|+....+ +.+...-+++..|+.+++ + ++.+++|. +++-|.
T Consensus 8 ~~~~ei~~aiadl~g~n~~~es~~i~~~~~~~~~~----~~~~~g~ll~kkwtSv~r------l-qKki~~Le-s~l~~~ 75 (406)
T KOG0295|consen 8 RQRDEINMAIADLSGSNGYSESDRIFHKEASLATE----MRKKDGGLLEKKWTSVDR------L-QKKIRELE-SKLDET 75 (406)
T ss_pred cchHHHHHHHHhhhccccccccceeEeecCCCccc----ccccccceeeccccccch------h-HHHHHHHH-hhhccc
Confidence 35789999999999999999999999999887543 334556689999998777 3 22222221 111110
Q ss_pred HHcCChHHHHHHHHhcchhhhcccCChHHHHHHHHHhcccCCCccccccCChhhHHHHHHHHHHhccccccCchHHHHHH
Q 010362 85 IELRELDTARAILRQTQAMGVMKQEQPERYLRLEHLLVRTYFDAHEAYQDSTKERRRAQIAQAIAAEVSVVPPSRLMALI 164 (512)
Q Consensus 85 l~~~~~~~a~~~lr~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~rl~~l~ 164 (512)
..++.. .+++..++. +...+|+..+..-+
T Consensus 76 -------------~~el~~-----------------------------g~pt~~~~~---------~~~wipRp~l~~~l 104 (406)
T KOG0295|consen 76 -------------GDELIA-----------------------------GDPTGSKRT---------PALWIPRPNLVQKL 104 (406)
T ss_pred -------------cccccc-----------------------------CCCCcCccC---------hhhcCCCCCchhhh
Confidence 011110 001111110 01134433333322
Q ss_pred HHHHHhhhhcCCCCCCCeeeeccCcccccccccccCccccceEEEecCcCceEEEEECCCCCEEEEEeCCCeEEEEEcCC
Q 010362 165 GQALKWQQHQGLLPPGTQFDLFRGTAAMKQDVEDMYPTTLSHTIKFGTKSHAECARFSPDGQFLVSCSFDGFIEVWDYLS 244 (512)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~ 244 (512)
.+ ...+..+.+++|... .++.........++|....++...++ ||.+.|..++|+..|+++|+++.|=.+.+||.++
T Consensus 105 ~g-~r~~vt~v~~hp~~~-~v~~as~d~tikv~D~~tg~~e~~Lr-GHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~ 181 (406)
T KOG0295|consen 105 AG-HRSSVTRVIFHPSEA-LVVSASEDATIKVFDTETGELERSLR-GHTDSVFDISFDASGKYLATCSSDLSAKLWDFDT 181 (406)
T ss_pred hc-cccceeeeeeccCce-EEEEecCCceEEEEEccchhhhhhhh-ccccceeEEEEecCccEEEecCCccchhheeHHH
Confidence 22 333444556666532 33334456677889999999999998 9999999999999999999999999999999865
Q ss_pred CeeeccccccccceeeccCcceeEEEEcCCCCeEEEEeCCCeEEEEEccCCeeeEEeccccccCeEEEEEecCCCEEEEE
Q 010362 245 GKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILST 324 (512)
Q Consensus 245 ~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 324 (512)
. +.+.+...+|...|.+++|-|.|.++++++.|.+|+.|++.+|.++.++. +|...|..+..+.||..++++
T Consensus 182 ~-------~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~-~h~ewvr~v~v~~DGti~As~ 253 (406)
T KOG0295|consen 182 F-------FRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFP-GHSEWVRMVRVNQDGTIIASC 253 (406)
T ss_pred H-------HHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEecc-CchHhEEEEEecCCeeEEEec
Confidence 3 23344567799999999999999999999999999999999999999997 899999999999999999999
Q ss_pred eCCCcEEEEeCCCCceeEEeeCCccceeEEEEcCC---------------CCEEEEEeCCCcEEEEeCCCCceeeecCCC
Q 010362 325 SFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTND---------------GSRVVTASSDCTVKVWDLKSTDCLQTFKPP 389 (512)
Q Consensus 325 ~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~---------------~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 389 (512)
+.|.++++|-+.++++...++.|..+|.+++|.|. +.++.+++.|++|++||+.++.++.++.
T Consensus 254 s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~-- 331 (406)
T KOG0295|consen 254 SNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLV-- 331 (406)
T ss_pred CCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEe--
Confidence 99999999999999999999999999999999763 2589999999999999999999999886
Q ss_pred CCCCCCCceeEEEEEcCCCCCeEEEEcCCCcEEEEecCCeEEEEeeCCcccCCcEEEEEECCCCCEEEEEeCCCeEEEEE
Q 010362 390 PPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFS 469 (512)
Q Consensus 390 ~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~dg~i~iwd 469 (512)
+|...|.+++|+|.+ .+++++..|+++++||++......... .+...++++.|..+..++++|+-|-.+++|.
T Consensus 332 ----ghdnwVr~~af~p~G-kyi~ScaDDktlrvwdl~~~~cmk~~~--ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwE 404 (406)
T KOG0295|consen 332 ----GHDNWVRGVAFSPGG-KYILSCADDKTLRVWDLKNLQCMKTLE--AHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 404 (406)
T ss_pred ----cccceeeeeEEcCCC-eEEEEEecCCcEEEEEeccceeeeccC--CCcceeEEEecCCCCceEEeccccceeeeee
Confidence 788999999999988 999999999999999999554433333 3466799999999999999999999999996
Q ss_pred c
Q 010362 470 H 470 (512)
Q Consensus 470 ~ 470 (512)
.
T Consensus 405 c 405 (406)
T KOG0295|consen 405 C 405 (406)
T ss_pred c
Confidence 4
No 50
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.3e-32 Score=256.10 Aligned_cols=321 Identities=21% Similarity=0.276 Sum_probs=263.8
Q ss_pred hhcCCCCCCCeeeeccCcccccccccccCccccceEEEecCcCceEEEEECCCCCEEEEEeCCCeEEEEEcCCCeeeccc
Q 010362 172 QHQGLLPPGTQFDLFRGTAAMKQDVEDMYPTTLSHTIKFGTKSHAECARFSPDGQFLVSCSFDGFIEVWDYLSGKLKKDL 251 (512)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~ 251 (512)
...|+.+..+...+..|..++...+|+........++. ||+..|+++.|+..|..||+||.|+.|.+||+-...-..
T Consensus 67 evt~l~~~~d~l~lAVGYaDGsVqif~~~s~~~~~tfn-gHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E~Gl~-- 143 (888)
T KOG0306|consen 67 EVTCLRSSDDILLLAVGYADGSVQIFSLESEEILITFN-GHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGEEGLF-- 143 (888)
T ss_pred eEEEeeccCCcceEEEEecCceEEeeccCCCceeeeec-ccccceEEEEEcccCceEeecCCCccEEEEEeccceeeE--
Confidence 33566665556666777778888888888776666665 999999999999999999999999999999986554333
Q ss_pred cccccceeeccCcceeEEEEcCCCCeEEEEeCCCeEEEEEccCCeeeEEec-----------------------------
Q 010362 252 QYQADETFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLE----------------------------- 302 (512)
Q Consensus 252 ~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~----------------------------- 302 (512)
.+.||...|+.+-|..+.+++++++.|+.|++||+.+..+..+..
T Consensus 144 ------rL~GHkd~iT~~~F~~~~~~lvS~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~~~~~~lvt~~~dse~~v~~ 217 (888)
T KOG0306|consen 144 ------RLRGHKDSITQALFLNGDSFLVSVSKDSMIKFWDLETQHCFETHVDHRGEIWALVLDEKLLVTAGTDSELKVWE 217 (888)
T ss_pred ------EeecchHHHhHHhccCCCeEEEEeccCceEEEEecccceeeeEEecccceEEEEEEecceEEEEecCCceEEEE
Confidence 456799999999999888899999999999999987755433221
Q ss_pred --------------------------------------------------------------------------------
Q 010362 303 -------------------------------------------------------------------------------- 302 (512)
Q Consensus 303 -------------------------------------------------------------------------------- 302 (512)
T Consensus 218 L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~ 297 (888)
T KOG0306|consen 218 LAFEDDEKETNRYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETE 297 (888)
T ss_pred eecccccccccccceeeccceeeeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhcccc
Confidence
Q ss_pred ------------------------------------------------------------------------cccccCeE
Q 010362 303 ------------------------------------------------------------------------RAHSEGVT 310 (512)
Q Consensus 303 ------------------------------------------------------------------------~~~~~~i~ 310 (512)
.+|...|.
T Consensus 298 e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVR 377 (888)
T KOG0306|consen 298 ENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVR 377 (888)
T ss_pred ccccchhhhHHHHHHHHHheechhheeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCccccccceeeeccchhhee
Confidence 24556677
Q ss_pred EEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeeCCccceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeecCCCC
Q 010362 311 SLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPP 390 (512)
Q Consensus 311 ~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 390 (512)
+++++.+...+++|+ .+.+++|+..+.++++++... .+.+..|-|.++++++|...|.+.+||+.+...+.+++
T Consensus 378 sl~vS~d~~~~~Sga-~~SikiWn~~t~kciRTi~~~--y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~--- 451 (888)
T KOG0306|consen 378 SLCVSSDSILLASGA-GESIKIWNRDTLKCIRTITCG--YILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIR--- 451 (888)
T ss_pred EEEeecCceeeeecC-CCcEEEEEccCcceeEEeccc--cEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhh---
Confidence 888887665555554 678999999999999998754 68889999999999999999999999999887666654
Q ss_pred CCCCCCceeEEEEEcCCCCCeEEEEcCCCcEEEEecCC------eEEEEeeCCc----ccCCcEEEEEECCCCCEEEEEe
Q 010362 391 PLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQG------QVVKSFSSGK----REGGDFVAACVSPKGEWIYCVG 460 (512)
Q Consensus 391 ~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~~~~~~------~~~~~~~~~~----~~~~~~~~~~~s~~g~~l~~g~ 460 (512)
+|++.+.+++..|++ ..+++++.|.+|++||..- ...+.+...+ .-...+.++.+||||++++++-
T Consensus 452 ---AHdgaIWsi~~~pD~-~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsL 527 (888)
T KOG0306|consen 452 ---AHDGAIWSISLSPDN-KGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSL 527 (888)
T ss_pred ---ccccceeeeeecCCC-CceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEe
Confidence 688999999999998 8899999999999999851 1111111111 1235689999999999999999
Q ss_pred CCCeEEEEEcCCCeeEEeccccCCCeEEEEEcCCCCeEEEEECCCeEEEec
Q 010362 461 EDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPHRNLLATYGEDCTMKLWK 511 (512)
Q Consensus 461 ~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~~~dg~i~iW~ 511 (512)
-|.+|.||-+.+-+..-.+.||.-||.|+..+||+++++|||.|.+|+||-
T Consensus 528 LdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWG 578 (888)
T KOG0306|consen 528 LDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWG 578 (888)
T ss_pred ccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEec
Confidence 999999999999999999999999999999999999999999999999995
No 51
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=7.6e-33 Score=231.15 Aligned_cols=248 Identities=23% Similarity=0.373 Sum_probs=211.2
Q ss_pred cccceeeccCcceeEEEEcCCCCeEEEEeCCCeEEEEEccCC-eeeEEeccccccCeEEEEEecCCCEEEEEeCCCcEEE
Q 010362 254 QADETFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSG-QCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARI 332 (512)
Q Consensus 254 ~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~vwd~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~i 332 (512)
.+...+.+|.+.|..+.|+|+|.+||+|+.|..|.+|++... +....+. +|.+.|..+.|.+|++.+++++.|.+|+.
T Consensus 38 ap~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lk-gHsgAVM~l~~~~d~s~i~S~gtDk~v~~ 116 (338)
T KOG0265|consen 38 APIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLK-GHSGAVMELHGMRDGSHILSCGTDKTVRG 116 (338)
T ss_pred chhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeec-cccceeEeeeeccCCCEEEEecCCceEEE
Confidence 445577889999999999999999999999999999996533 3344554 89999999999999999999999999999
Q ss_pred EeCCCCceeEEeeCCccceeEEEEcCCCC-EEEEEeCCCcEEEEeCCCCceeeecCCCCCCCCCCceeEEEEEcCCCCCe
Q 010362 333 HGLKSGKLLKEFRGHSSYVNDAIFTNDGS-RVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDH 411 (512)
Q Consensus 333 ~d~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 411 (512)
||+++|+.++.+++|...|+++.-+.-|. .+.+++.||++++||+|+...++++. ...+++++.|...+ ..
T Consensus 117 wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~-------~kyqltAv~f~d~s-~q 188 (338)
T KOG0265|consen 117 WDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE-------NKYQLTAVGFKDTS-DQ 188 (338)
T ss_pred EecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccc-------cceeEEEEEecccc-cc
Confidence 99999999999999999999988554444 55678889999999999988888775 34588999998877 88
Q ss_pred EEEEcCCCcEEEEecCCeEEEEeeCCcccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCC----CeeEEeccccC----
Q 010362 412 IVVCNKTSSIYIMTLQGQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQS----GKLEHLMKVHE---- 483 (512)
Q Consensus 412 l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~dg~i~iwd~~~----~~~~~~~~~h~---- 483 (512)
+.+|+-|+.|++||++.+.......+ +..+|+.+..+|+|.++.+-+.|.++++||++. ..++..+.+|.
T Consensus 189 v~sggIdn~ikvWd~r~~d~~~~lsG--h~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfe 266 (338)
T KOG0265|consen 189 VISGGIDNDIKVWDLRKNDGLYTLSG--HADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFE 266 (338)
T ss_pred eeeccccCceeeeccccCcceEEeec--ccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhh
Confidence 99999999999999985544444433 356799999999999999999999999999874 34477777664
Q ss_pred CCeEEEEEcCCCCeEEEEECCCeEEEecC
Q 010362 484 KDVIGVTHHPHRNLLATYGEDCTMKLWKP 512 (512)
Q Consensus 484 ~~v~~v~~~p~~~~l~s~~~dg~i~iW~~ 512 (512)
.....++|+|++..+..|+.|..+++||.
T Consensus 267 knlL~cswsp~~~~i~ags~dr~vyvwd~ 295 (338)
T KOG0265|consen 267 KNLLKCSWSPNGTKITAGSADRFVYVWDT 295 (338)
T ss_pred hhcceeeccCCCCccccccccceEEEeec
Confidence 34557899999999999999999999984
No 52
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.3e-33 Score=227.82 Aligned_cols=282 Identities=16% Similarity=0.257 Sum_probs=227.9
Q ss_pred EEEEECC-CCCEEEEEe-------CCCeEEEEEcCCCeeeccccccccceeeccCcceeEEEEcCC-CCeEEEEeCCCeE
Q 010362 217 ECARFSP-DGQFLVSCS-------FDGFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRD-SEMLASGSQDGKI 287 (512)
Q Consensus 217 ~~~~~s~-~~~~l~sg~-------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~-~~~l~s~~~dg~i 287 (512)
.++.||| -.++||++. ..|++.|-++..+.-+.... . ..-...+..++|+++ .+.+++++.||++
T Consensus 12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~-----s-~d~~D~LfdV~Wse~~e~~~~~a~GDGSL 85 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQ-----S-YDTEDGLFDVAWSENHENQVIAASGDGSL 85 (311)
T ss_pred ceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEE-----e-eecccceeEeeecCCCcceEEEEecCceE
Confidence 5688998 223343332 47899999986444333221 1 125678999999995 4678889999999
Q ss_pred EEEEccCC-eeeEEeccccccCeEEEEEec-CCCEEEEEeCCCcEEEEeCCCCceeEEeeCCccceeEEEEcC-CCCEEE
Q 010362 288 KVWRIRSG-QCLRRLERAHSEGVTSLVFSR-DGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTN-DGSRVV 364 (512)
Q Consensus 288 ~vwd~~~~-~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~ 364 (512)
++||+... .++..++ .|...|.++.|++ ++..+++++.|++|++|+...++.+.++++|...|....|+| .++.++
T Consensus 86 rl~d~~~~s~Pi~~~k-EH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfa 164 (311)
T KOG0277|consen 86 RLFDLTMPSKPIHKFK-EHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFA 164 (311)
T ss_pred EEeccCCCCcchhHHH-hhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEE
Confidence 99996433 4566665 8999999999998 566788889999999999999999999999999999999999 678999
Q ss_pred EEeCCCcEEEEeCCCCceeeecCCCCCCCCCCceeEEEEEcCCCCCeEEEEcCCCcEEEEecCCeEEEEeeCCcccCCcE
Q 010362 365 TASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQVVKSFSSGKREGGDF 444 (512)
Q Consensus 365 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 444 (512)
+++.||++++||++.......++ .|...+.+..|+..+..++++++.|+.|+.||++.-....+. ...++..|
T Consensus 165 s~Sgd~~l~lwdvr~~gk~~~i~------ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~e-L~gh~~AV 237 (311)
T KOG0277|consen 165 SASGDGTLRLWDVRSPGKFMSIE------AHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFE-LNGHGLAV 237 (311)
T ss_pred EccCCceEEEEEecCCCceeEEE------eccceeEeecccccCCcEEEecCCCceEEEEehhhcccccee-ecCCceEE
Confidence 99999999999998754333333 567899999999999999999999999999999954333222 24467789
Q ss_pred EEEEECCC-CCEEEEEeCCCeEEEEEcCC-CeeEEeccccCCCeEEEEEcC-CCCeEEEEECCCeEEEecC
Q 010362 445 VAACVSPK-GEWIYCVGEDRNLYCFSHQS-GKLEHLMKVHEKDVIGVTHHP-HRNLLATYGEDCTMKLWKP 512 (512)
Q Consensus 445 ~~~~~s~~-g~~l~~g~~dg~i~iwd~~~-~~~~~~~~~h~~~v~~v~~~p-~~~~l~s~~~dg~i~iW~~ 512 (512)
..+.|||. ...|++++.|-+++|||... ...+.+...|+.-|..+.|++ ++.++|+++.|+.++||+|
T Consensus 238 Rkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 238 RKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred EEEecCcchhhHhhhccccceEEecccccchhhhhhhhccceEEeccccccccCceeeecccccceeeecc
Confidence 99999996 45788999999999999874 456677788999999999999 6789999999999999996
No 53
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.1e-32 Score=256.60 Aligned_cols=280 Identities=20% Similarity=0.319 Sum_probs=248.0
Q ss_pred ecCcCceEEEEECCCCCEEEEEeCCCeEEEEEcCCCeeeccccccccceeeccCcceeEEEEcCCCCeEEEEeCCCeEEE
Q 010362 210 FGTKSHAECARFSPDGQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQDGKIKV 289 (512)
Q Consensus 210 ~~h~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~v 289 (512)
.||+..|.++++|.+...+++|+ .+.++||+..+.++++++. .+.+.+..|-|.++++++|...|.+.+
T Consensus 370 ~GHR~dVRsl~vS~d~~~~~Sga-~~SikiWn~~t~kciRTi~----------~~y~l~~~Fvpgd~~Iv~G~k~Gel~v 438 (888)
T KOG0306|consen 370 GGHRSDVRSLCVSSDSILLASGA-GESIKIWNRDTLKCIRTIT----------CGYILASKFVPGDRYIVLGTKNGELQV 438 (888)
T ss_pred ccchhheeEEEeecCceeeeecC-CCcEEEEEccCcceeEEec----------cccEEEEEecCCCceEEEeccCCceEE
Confidence 49999999999999998888887 6799999999999888764 347899999999999999999999999
Q ss_pred EEccCCeeeEEeccccccCeEEEEEecCCCEEEEEeCCCcEEEEeCCC-----CceeE--Eee-----CCccceeEEEEc
Q 010362 290 WRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKS-----GKLLK--EFR-----GHSSYVNDAIFT 357 (512)
Q Consensus 290 wd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~i~d~~~-----~~~~~--~~~-----~~~~~v~~~~~~ 357 (512)
||+.+...+.++. .|.+.|.+++.+||+..+++|+.|.+|++||..- +...+ .+. .-...|.|+.+|
T Consensus 439 fdlaS~~l~Eti~-AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~S 517 (888)
T KOG0306|consen 439 FDLASASLVETIR-AHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVS 517 (888)
T ss_pred EEeehhhhhhhhh-ccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEc
Confidence 9999999888887 8999999999999999999999999999999741 11111 111 134569999999
Q ss_pred CCCCEEEEEeCCCcEEEEeCCCCceeeecCCCCCCCCCCceeEEEEEcCCCCCeEEEEcCCCcEEEEecC-CeEEEEeeC
Q 010362 358 NDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQ-GQVVKSFSS 436 (512)
Q Consensus 358 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~~~~~-~~~~~~~~~ 436 (512)
|||++|+++--|.+++||-+.+.+..-++ .+|.-||.++.++|++ .++++|+.|.+|++|-++ |..-+.+..
T Consensus 518 pdgk~LaVsLLdnTVkVyflDtlKFflsL------YGHkLPV~smDIS~DS-klivTgSADKnVKiWGLdFGDCHKS~fA 590 (888)
T KOG0306|consen 518 PDGKLLAVSLLDNTVKVYFLDTLKFFLSL------YGHKLPVLSMDISPDS-KLIVTGSADKNVKIWGLDFGDCHKSFFA 590 (888)
T ss_pred CCCcEEEEEeccCeEEEEEecceeeeeee------cccccceeEEeccCCc-CeEEeccCCCceEEeccccchhhhhhhc
Confidence 99999999999999999999887655444 4899999999999998 999999999999999999 655555555
Q ss_pred CcccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCeeEEeccccCCCeEEEEEcCCCCeEEEEECCCeEEEec
Q 010362 437 GKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPHRNLLATYGEDCTMKLWK 511 (512)
Q Consensus 437 ~~~~~~~~~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~~~dg~i~iW~ 511 (512)
|...+.++.|-|....++++|.|+.|+-||-..-+.++.+.+|...|+|++.+|+|.+++|+|.|.+|++|.
T Consensus 591 ---HdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~shD~sIRlwE 662 (888)
T KOG0306|consen 591 ---HDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSHDKSIRLWE 662 (888)
T ss_pred ---ccCceeEEEEcccceeEEEecCcceEEeechhhhhhheeeccchheeeeeEEcCCCCeEEeccCCceeEeee
Confidence 346799999999999999999999999999999999999999999999999999999999999999999995
No 54
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=2.8e-32 Score=263.54 Aligned_cols=242 Identities=30% Similarity=0.554 Sum_probs=216.3
Q ss_pred cCcceeEEEEcCCCCeEEEEeCCCeEEEEEccCCe--eeEEeccccccCeEEEEEecCCCEEEEEeCCCcEEEEeC-CCC
Q 010362 262 HDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQ--CLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGL-KSG 338 (512)
Q Consensus 262 h~~~v~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~i~d~-~~~ 338 (512)
+...|.++.|+++|+.+++++.|+.+++|+..+++ ....+ .+|...|.+++|+|+++++++++.|++|++||+ ..+
T Consensus 158 ~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l-~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~ 236 (456)
T KOG0266|consen 158 ECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLREL-SGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDG 236 (456)
T ss_pred ccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccc-cccccceeeeEECCCCcEEEEecCCceEEEeeccCCC
Confidence 47899999999999999999999999999997777 56666 489999999999999999999999999999999 555
Q ss_pred ceeEEeeCCccceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeecCCCCCCCCCCceeEEEEEcCCCCCeEEEEcCC
Q 010362 339 KLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKT 418 (512)
Q Consensus 339 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~ 418 (512)
..++++++|...|++++|+|+++.+++|+.|++|++||++++++...+. +|...|+++++.+++ ..+++++.|
T Consensus 237 ~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~------~hs~~is~~~f~~d~-~~l~s~s~d 309 (456)
T KOG0266|consen 237 RNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLK------GHSDGISGLAFSPDG-NLLVSASYD 309 (456)
T ss_pred eEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeee------ccCCceEEEEECCCC-CEEEEcCCC
Confidence 8899999999999999999999999999999999999999999888876 678899999999998 888888999
Q ss_pred CcEEEEecCCeE---EEEeeCCcccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCeeEEeccccCCC---eEEEEEc
Q 010362 419 SSIYIMTLQGQV---VKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKD---VIGVTHH 492 (512)
Q Consensus 419 ~~i~~~~~~~~~---~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~---v~~v~~~ 492 (512)
+.+++||..+.. ...+....... .+..++|+|++.++++++.|+.+++||+..+.....+.+|... +.+...+
T Consensus 310 ~~i~vwd~~~~~~~~~~~~~~~~~~~-~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (456)
T KOG0266|consen 310 GTIRVWDLETGSKLCLKLLSGAENSA-PVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLS 388 (456)
T ss_pred ccEEEEECCCCceeeeecccCCCCCC-ceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEeccccc
Confidence 999999999655 34444444333 7899999999999999999999999999999999999999774 4444557
Q ss_pred CCCCeEEEEECCCeEEEecC
Q 010362 493 PHRNLLATYGEDCTMKLWKP 512 (512)
Q Consensus 493 p~~~~l~s~~~dg~i~iW~~ 512 (512)
+.+.++++|+.|+.|.+|++
T Consensus 389 ~~~~~i~sg~~d~~v~~~~~ 408 (456)
T KOG0266|consen 389 TGGKLIYSGSEDGSVYVWDS 408 (456)
T ss_pred CCCCeEEEEeCCceEEEEeC
Confidence 78999999999999999985
No 55
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.5e-32 Score=250.68 Aligned_cols=245 Identities=20% Similarity=0.362 Sum_probs=223.2
Q ss_pred eeeccCcceeEEEEcCCCCeEEEEeCCCeEEEEEccCCeeeEEeccccccCeEEEEEecCCCEEEEEeCCCcEEEEeCCC
Q 010362 258 TFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKS 337 (512)
Q Consensus 258 ~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~i~d~~~ 337 (512)
++..++..|.++.++|...+++++-.+|.|.|||.++...++.+. -...+|.+..|-+.-+.+++|+.|..|++|+..+
T Consensus 8 k~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfe-V~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt 86 (794)
T KOG0276|consen 8 KFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFE-VSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNT 86 (794)
T ss_pred HhhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeee-ecccchhhheeeeccceEEEecCCceEEEEeccc
Confidence 344488999999999999999999999999999999999999997 6788999999999999999999999999999999
Q ss_pred CceeEEeeCCccceeEEEEcCCCCEEEEEeCCCcEEEEeCCCC-ceeeecCCCCCCCCCCceeEEEEEcCCCCCeEEEEc
Q 010362 338 GKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKST-DCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCN 416 (512)
Q Consensus 338 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~ 416 (512)
++.+..|..|...|++++.+|...++++++.|-+|++||.... .+.+++. +|...|.+++++|.+.+.+++++
T Consensus 87 ~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfe------GH~HyVMqv~fnPkD~ntFaS~s 160 (794)
T KOG0276|consen 87 GEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFE------GHEHYVMQVAFNPKDPNTFASAS 160 (794)
T ss_pred ceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEc------CcceEEEEEEecCCCccceeeee
Confidence 9999999999999999999999999999999999999999865 4555554 88999999999999999999999
Q ss_pred CCCcEEEEecCC-eEEEEeeCCcccCCcEEEEEECC--CCCEEEEEeCCCeEEEEEcCCCeeEEeccccCCCeEEEEEcC
Q 010362 417 KTSSIYIMTLQG-QVVKSFSSGKREGGDFVAACVSP--KGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHP 493 (512)
Q Consensus 417 ~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~s~--~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~p 493 (512)
-|++|++|.+.. .+..++.. |...+.++++-+ |..++++|+.|..|+|||.++..+++++.+|...|+.+.|+|
T Consensus 161 LDrTVKVWslgs~~~nfTl~g---HekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp 237 (794)
T KOG0276|consen 161 LDRTVKVWSLGSPHPNFTLEG---HEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHP 237 (794)
T ss_pred ccccEEEEEcCCCCCceeeec---cccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecC
Confidence 999999999984 34444443 355689999965 557999999999999999999999999999999999999999
Q ss_pred CCCeEEEEECCCeEEEecC
Q 010362 494 HRNLLATYGEDCTMKLWKP 512 (512)
Q Consensus 494 ~~~~l~s~~~dg~i~iW~~ 512 (512)
.-++++|||.||++|||..
T Consensus 238 ~lpiiisgsEDGTvriWhs 256 (794)
T KOG0276|consen 238 ELPIIISGSEDGTVRIWNS 256 (794)
T ss_pred CCcEEEEecCCccEEEecC
Confidence 9999999999999999973
No 56
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1e-31 Score=248.30 Aligned_cols=273 Identities=21% Similarity=0.325 Sum_probs=235.9
Q ss_pred EEEECCCCCEEEEEeCCCeEEEEEcCCCeeeccccccccceeeccCcceeEEEEcCCCCeEEEEeCCCeEEEEEccCCee
Q 010362 218 CARFSPDGQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQC 297 (512)
Q Consensus 218 ~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~ 297 (512)
-+.|+ ..+.||+|. ...|++|+..++........ +...|+++.|+++|.+|++|..+|.|.|||..+.+.
T Consensus 182 lldWs-s~n~laVal-g~~vylW~~~s~~v~~l~~~--------~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~ 251 (484)
T KOG0305|consen 182 LLDWS-SANVLAVAL-GQSVYLWSASSGSVTELCSF--------GEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKK 251 (484)
T ss_pred Hhhcc-cCCeEEEEe-cceEEEEecCCCceEEeEec--------CCCceEEEEECCCCCEEEEeecCCeEEEEehhhccc
Confidence 36788 455777776 56899999988875443322 478999999999999999999999999999999999
Q ss_pred eEEeccccccCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEE-eeCCccceeEEEEcCCCCEEEEEeCCCcEEEEe
Q 010362 298 LRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKE-FRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWD 376 (512)
Q Consensus 298 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd 376 (512)
+..+...|...|.+++|. +..+.+|+.|+.|..+|++..+.... +.+|...|..+.|++|++++++|+.|+.+.|||
T Consensus 252 ~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd 329 (484)
T KOG0305|consen 252 TRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWD 329 (484)
T ss_pred cccccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEecc
Confidence 998874499999999998 67899999999999999998876655 888999999999999999999999999999999
Q ss_pred CCCCceeeecCCCCCCCCCCceeEEEEEcCCCCCeEEEEc--CCCcEEEEecC-CeEEEEeeCCcccCCcEEEEEECCCC
Q 010362 377 LKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCN--KTSSIYIMTLQ-GQVVKSFSSGKREGGDFVAACVSPKG 453 (512)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~--~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~s~~g 453 (512)
.....+...+. .|...|.+++|+|-...+|++|+ .|+.|++||.. +..+..... +..|..+.|++..
T Consensus 330 ~~~~~p~~~~~------~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdt----gsQVcsL~Wsk~~ 399 (484)
T KOG0305|consen 330 GLSPEPKFTFT------EHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDT----GSQVCSLIWSKKY 399 (484)
T ss_pred CCCccccEEEe------ccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEeccccc----CCceeeEEEcCCC
Confidence 96666555554 68899999999999999999975 68999999998 445554443 4569999999998
Q ss_pred CEEEEEe--CCCeEEEEEcCCCeeEEeccccCCCeEEEEEcCCCCeEEEEECCCeEEEecC
Q 010362 454 EWIYCVG--EDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPHRNLLATYGEDCTMKLWKP 512 (512)
Q Consensus 454 ~~l~~g~--~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~~~dg~i~iW~~ 512 (512)
+-|+++. .++.|.||+..+.+.+..+.+|...|..++++|||..+++|+.|.++++|+.
T Consensus 400 kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~ 460 (484)
T KOG0305|consen 400 KELLSTHGYSENQITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWNL 460 (484)
T ss_pred CEEEEecCCCCCcEEEEeccccceeeeecCCcceeEEEEECCCCCEEEEecccCcEEeccc
Confidence 7666544 6778999999999999999999999999999999999999999999999973
No 57
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=100.00 E-value=5.3e-32 Score=241.75 Aligned_cols=302 Identities=16% Similarity=0.256 Sum_probs=233.8
Q ss_pred cCccccceEEEecCcCceEEEEECCCCCEEEEEeCCCeEEEEEcCCCeeeccccccccceeeccCcceeEEEEcCCCCeE
Q 010362 199 MYPTTLSHTIKFGTKSHAECARFSPDGQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEML 278 (512)
Q Consensus 199 ~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l 278 (512)
..|......++ +|+..|+++++.|.|..|++||.|-+|++||+......... +. .........|.+++|++.|..|
T Consensus 154 ~IP~shEi~l~-hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~-fr--~l~P~E~h~i~sl~ys~Tg~~i 229 (641)
T KOG0772|consen 154 LIPGSHEIQLK-HGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRS-FR--QLQPCETHQINSLQYSVTGDQI 229 (641)
T ss_pred cCCccceEecc-CCceEEEEeeecCCCceeeeccccceEEEEecccccccchh-hh--ccCcccccccceeeecCCCCeE
Confidence 45666666665 88889999999999999999999999999999764322111 11 1112245679999999999999
Q ss_pred EEEeCCCeEEEEEccCCeeeEEec------------cccccCeEEEEEecCC-CEEEEEeCCCcEEEEeCCCCce-eEEe
Q 010362 279 ASGSQDGKIKVWRIRSGQCLRRLE------------RAHSEGVTSLVFSRDG-SQILSTSFDSTARIHGLKSGKL-LKEF 344 (512)
Q Consensus 279 ~s~~~dg~i~vwd~~~~~~~~~~~------------~~~~~~i~~~~~~~~~-~~l~~~~~dg~v~i~d~~~~~~-~~~~ 344 (512)
++.+.....+|+| +.|..+..+. .+|...++|.+|+|.. ..|++++.||++++||+...+. ...+
T Consensus 230 Lvvsg~aqakl~D-RdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVi 308 (641)
T KOG0772|consen 230 LVVSGSAQAKLLD-RDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVI 308 (641)
T ss_pred EEEecCcceeEEc-cCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEE
Confidence 9998889999999 4454433332 4788999999999964 5788999999999999976543 2233
Q ss_pred e-----CCccceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeecCCCCCCCCCCc--eeEEEEEcCCCCCeEEEEcC
Q 010362 345 R-----GHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDA--SVNSVHLFPKNPDHIVVCNK 417 (512)
Q Consensus 345 ~-----~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~--~i~~~~~~~~~~~~l~~~~~ 417 (512)
+ +..-++++++|+++|++|++|+.||.|.+|+..+......+... ..|.. .|+++.|++++ ++|++-+.
T Consensus 309 k~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk---~AH~~g~~Itsi~FS~dg-~~LlSRg~ 384 (641)
T KOG0772|consen 309 KTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVK---DAHLPGQDITSISFSYDG-NYLLSRGF 384 (641)
T ss_pred eeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEee---eccCCCCceeEEEecccc-chhhhccC
Confidence 2 23447899999999999999999999999998654322221111 23444 89999999998 99999999
Q ss_pred CCcEEEEecC--CeEEEEeeCCcccCCcEEEEEECCCCCEEEEEeC------CCeEEEEEcCCCeeEEeccccCCCeEEE
Q 010362 418 TSSIYIMTLQ--GQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGE------DRNLYCFSHQSGKLEHLMKVHEKDVIGV 489 (512)
Q Consensus 418 ~~~i~~~~~~--~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~------dg~i~iwd~~~~~~~~~~~~h~~~v~~v 489 (512)
|+.+++||++ .+.+....... ...+-+.+||||+.++|++|+. .|.+++||..+-..+..+......|..+
T Consensus 385 D~tLKvWDLrq~kkpL~~~tgL~-t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~ 463 (641)
T KOG0772|consen 385 DDTLKVWDLRQFKKPLNVRTGLP-TPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRC 463 (641)
T ss_pred CCceeeeeccccccchhhhcCCC-ccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEE
Confidence 9999999998 33444333332 2345678999999999999973 5689999999999998888778889999
Q ss_pred EEcCCCCeEEEEECCCeEEEe
Q 010362 490 THHPHRNLLATYGEDCTMKLW 510 (512)
Q Consensus 490 ~~~p~~~~l~s~~~dg~i~iW 510 (512)
.|||.-+.|..|+.||++++|
T Consensus 464 ~WhpkLNQi~~gsgdG~~~vy 484 (641)
T KOG0772|consen 464 LWHPKLNQIFAGSGDGTAHVY 484 (641)
T ss_pred eecchhhheeeecCCCceEEE
Confidence 999988888888899999874
No 58
>PTZ00421 coronin; Provisional
Probab=100.00 E-value=1.1e-30 Score=250.99 Aligned_cols=273 Identities=14% Similarity=0.213 Sum_probs=210.1
Q ss_pred CceEEEEECCCCCEEEEEeCCCeEEEEEcCCCeeeccccc-----cccceeeccCcceeEEEEcC-CCCeEEEEeCCCeE
Q 010362 214 SHAECARFSPDGQFLVSCSFDGFIEVWDYLSGKLKKDLQY-----QADETFMMHDETVLCIEFSR-DSEMLASGSQDGKI 287 (512)
Q Consensus 214 ~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~-----~~~~~~~~h~~~v~~l~~s~-~~~~l~s~~~dg~i 287 (512)
..|.....++++..+++++.+..+..|+...+.....+.. .....+.+|.+.|.+++|+| ++++|++|+.||+|
T Consensus 21 ~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtI 100 (493)
T PTZ00421 21 LNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGTI 100 (493)
T ss_pred eccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEE
Confidence 3456666777877777788788888887655433211110 11224778999999999999 88999999999999
Q ss_pred EEEEccCCe-------eeEEeccccccCeEEEEEecCC-CEEEEEeCCCcEEEEeCCCCceeEEeeCCccceeEEEEcCC
Q 010362 288 KVWRIRSGQ-------CLRRLERAHSEGVTSLVFSRDG-SQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTND 359 (512)
Q Consensus 288 ~vwd~~~~~-------~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~ 359 (512)
++||+.++. .+..+. +|...|.+++|+|++ ++|++|+.|+.|++||+++++.+..+.+|...|.+++|+|+
T Consensus 101 kIWdi~~~~~~~~~~~~l~~L~-gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spd 179 (493)
T PTZ00421 101 MGWGIPEEGLTQNISDPIVHLQ-GHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLD 179 (493)
T ss_pred EEEecCCCccccccCcceEEec-CCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEECC
Confidence 999997653 345565 799999999999975 68999999999999999999999999999999999999999
Q ss_pred CCEEEEEeCCCcEEEEeCCCCceeeecCCCCCCCCCCc-eeEEEEEcCCCCCeEEEE---cCCCcEEEEecCCe--EEEE
Q 010362 360 GSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDA-SVNSVHLFPKNPDHIVVC---NKTSSIYIMTLQGQ--VVKS 433 (512)
Q Consensus 360 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~~l~~~---~~~~~i~~~~~~~~--~~~~ 433 (512)
|..|++++.||+|++||+++++.+..+.. |.. ....+.|.+.+..++.++ +.++.|++||++.. ....
T Consensus 180 G~lLatgs~Dg~IrIwD~rsg~~v~tl~~------H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~ 253 (493)
T PTZ00421 180 GSLLCTTSKDKKLNIIDPRDGTIVSSVEA------HASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYST 253 (493)
T ss_pred CCEEEEecCCCEEEEEECCCCcEEEEEec------CCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeE
Confidence 99999999999999999999987776643 322 234567888764444444 34789999999832 2222
Q ss_pred eeCCcccCCcEEEEEECCCCCEEEEEe-CCCeEEEEEcCCCeeEEeccc-cCCCeEEEEEcCCC
Q 010362 434 FSSGKREGGDFVAACVSPKGEWIYCVG-EDRNLYCFSHQSGKLEHLMKV-HEKDVIGVTHHPHR 495 (512)
Q Consensus 434 ~~~~~~~~~~~~~~~~s~~g~~l~~g~-~dg~i~iwd~~~~~~~~~~~~-h~~~v~~v~~~p~~ 495 (512)
.... ....+....|+++++++++|+ .||.|++||+.+++++..... +..++.+++|.|..
T Consensus 254 ~~~d--~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s~~~~~g~~~~pk~ 315 (493)
T PTZ00421 254 VDLD--QSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYSSVEPHKGLCMMPKW 315 (493)
T ss_pred eccC--CCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeeccCCCCCcceEecccc
Confidence 2211 223455677899999999888 599999999999988776544 44577888898853
No 59
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=100.00 E-value=1.3e-29 Score=221.98 Aligned_cols=283 Identities=21% Similarity=0.300 Sum_probs=243.9
Q ss_pred cCcCceEEEEECCCCCEEEEEeCCCeEEEEEcCCCeeeccccccccceeeccCcceeEEEEcCCCCeEEEEeCCCeEEEE
Q 010362 211 GTKSHAECARFSPDGQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQDGKIKVW 290 (512)
Q Consensus 211 ~h~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~vw 290 (512)
.....++++...|....+++|+.|..+.++|...++... .+.||...|+.+.++|+...+++++.|..|+||
T Consensus 217 t~~pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~--------~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vw 288 (506)
T KOG0289|consen 217 TSTPGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILA--------TLKGHTKKITSVKFHKDLDTVITASADEIIRVW 288 (506)
T ss_pred cCCCCeeEEeecCCCCcceecCCCCceEEEecchhhhhh--------hccCcceEEEEEEeccchhheeecCCcceEEee
Confidence 344568888888887899999999999999988877655 566799999999999999999999999999999
Q ss_pred EccCCeeeEEeccccccCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeeCC--ccceeEEEEcCCCCEEEEEeC
Q 010362 291 RIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRGH--SSYVNDAIFTNDGSRVVTASS 368 (512)
Q Consensus 291 d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~ 368 (512)
............ .|..+|+.+..+|+|.||++++.||+..+.|++++..+...... .-.+++.+|+|||..|.+|..
T Consensus 289 s~~~~s~~~~~~-~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~ 367 (506)
T KOG0289|consen 289 SVPLSSEPTSSR-PHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTP 367 (506)
T ss_pred ccccccCccccc-cccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCC
Confidence 998777666554 89999999999999999999999999999999999988776542 235899999999999999999
Q ss_pred CCcEEEEeCCCCceeeecCCCCCCCCCCceeEEEEEcCCCCCeEEEEcCCCcEEEEecCC-eEEEEeeCCcccCCcEEEE
Q 010362 369 DCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQG-QVVKSFSSGKREGGDFVAA 447 (512)
Q Consensus 369 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~ 447 (512)
||.++|||+.++.....|+ +|.++|..+.|+.++ .+++++..|+.|++||++. ...+.+.... ...+..+
T Consensus 368 d~~vkiwdlks~~~~a~Fp------ght~~vk~i~FsENG-Y~Lat~add~~V~lwDLRKl~n~kt~~l~~--~~~v~s~ 438 (506)
T KOG0289|consen 368 DGVVKIWDLKSQTNVAKFP------GHTGPVKAISFSENG-YWLATAADDGSVKLWDLRKLKNFKTIQLDE--KKEVNSL 438 (506)
T ss_pred CceEEEEEcCCccccccCC------CCCCceeEEEeccCc-eEEEEEecCCeEEEEEehhhcccceeeccc--cccceeE
Confidence 9999999999987666654 688999999999887 8999999999999999993 4444444433 2368899
Q ss_pred EECCCCCEEEEEeCCCeEEEEEcC--CCeeEEeccccCCCeEEEEEcCCCCeEEEEECCCeEEEec
Q 010362 448 CVSPKGEWIYCVGEDRNLYCFSHQ--SGKLEHLMKVHEKDVIGVTHHPHRNLLATYGEDCTMKLWK 511 (512)
Q Consensus 448 ~~s~~g~~l~~g~~dg~i~iwd~~--~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~~~dg~i~iW~ 511 (512)
+|.+.|.+++.++.|=.|++++-. +...+..+..|.+..+++.|....++++++|.|..++++.
T Consensus 439 ~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a 504 (506)
T KOG0289|consen 439 SFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLYA 504 (506)
T ss_pred EEcCCCCeEEeecceeEEEEEecccccceeeehhhhcccccceeeecccceEEeeccchhheEEee
Confidence 999999999999888888888744 4467777888999999999999999999999999998864
No 60
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=100.00 E-value=4.8e-31 Score=256.51 Aligned_cols=297 Identities=24% Similarity=0.292 Sum_probs=238.5
Q ss_pred cCcCceEEEEECCCCCEEEEEe--CCCeEEEEEcCCCe----eeccccccccceeeccCcceeEEEEcCCCCeEEEEeCC
Q 010362 211 GTKSHAECARFSPDGQFLVSCS--FDGFIEVWDYLSGK----LKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQD 284 (512)
Q Consensus 211 ~h~~~v~~~~~s~~~~~l~sg~--~dg~i~iwd~~~~~----~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d 284 (512)
++...|.++..+|+|..+|||+ .||.++||+.+.-- .....-.........|.+.|+|+.|+|||.+||+|+.|
T Consensus 11 H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD 90 (942)
T KOG0973|consen 11 HNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDD 90 (942)
T ss_pred cCCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCc
Confidence 5566799999999999999999 99999999864311 11110112223455699999999999999999999999
Q ss_pred CeEEEEEccC-------C-----------eeeEEeccccccCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeeC
Q 010362 285 GKIKVWRIRS-------G-----------QCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRG 346 (512)
Q Consensus 285 g~i~vwd~~~-------~-----------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~ 346 (512)
+.|.||.... | +.+..+. +|...|..++|+|++.++++++.|++|.+||..+.+.+..+++
T Consensus 91 ~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~-~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~ 169 (942)
T KOG0973|consen 91 RLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILR-GHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRG 169 (942)
T ss_pred ceEEEeeecccCCcccccccccccccceeeEEEEEe-cCCCccceeccCCCccEEEEecccceEEEEccccceeeeeeec
Confidence 9999998762 1 2455555 8999999999999999999999999999999999999999999
Q ss_pred CccceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeecCCCCCCCCCCceeEEEEEcCCCCCeEEEEc----CCCcEE
Q 010362 347 HSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCN----KTSSIY 422 (512)
Q Consensus 347 ~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~----~~~~i~ 422 (512)
|.+.|..+.|.|-|++|++-+.|++|+||++.+....+.+..+............+.|+|++ .++++.. ....+.
T Consensus 170 H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG-~~las~nA~n~~~~~~~ 248 (942)
T KOG0973|consen 170 HQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDG-HHLASPNAVNGGKSTIA 248 (942)
T ss_pred ccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCc-CeecchhhccCCcceeE
Confidence 99999999999999999999999999999988877777777666555667788999999999 6665543 233466
Q ss_pred EEecCCeEEEEeeCCcccCCcEEEEEECCC-------------CC----EEEEEeCCCeEEEEEcCCCeeEEecc-ccCC
Q 010362 423 IMTLQGQVVKSFSSGKREGGDFVAACVSPK-------------GE----WIYCVGEDRNLYCFSHQSGKLEHLMK-VHEK 484 (512)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-------------g~----~l~~g~~dg~i~iwd~~~~~~~~~~~-~h~~ 484 (512)
+.+-.+-.......+ |..++.++.|+|. ++ .+|+|+.|+.|.||.....+++.... -...
T Consensus 249 IieR~tWk~~~~LvG--H~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~ 326 (942)
T KOG0973|consen 249 IIERGTWKVDKDLVG--HSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNK 326 (942)
T ss_pred EEecCCceeeeeeec--CCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhhhcC
Confidence 666654443333333 3557899999872 11 67889999999999998877776553 2357
Q ss_pred CeEEEEEcCCCCeEEEEECCCeEEEec
Q 010362 485 DVIGVTHHPHRNLLATYGEDCTMKLWK 511 (512)
Q Consensus 485 ~v~~v~~~p~~~~l~s~~~dg~i~iW~ 511 (512)
.|..++|+|||..|..||.||+|.+..
T Consensus 327 SI~DmsWspdG~~LfacS~DGtV~~i~ 353 (942)
T KOG0973|consen 327 SIVDMSWSPDGFSLFACSLDGTVALIH 353 (942)
T ss_pred ceeeeeEcCCCCeEEEEecCCeEEEEE
Confidence 899999999999999999999998753
No 61
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=9.8e-33 Score=244.83 Aligned_cols=248 Identities=20% Similarity=0.366 Sum_probs=215.3
Q ss_pred ccccceeeccCcceeEEEEcC-CCCeEEEEeCCCeEEEEEccC-CeeeEEeccccccCeEEEEEecCCCEEEEEeCCCcE
Q 010362 253 YQADETFMMHDETVLCIEFSR-DSEMLASGSQDGKIKVWRIRS-GQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTA 330 (512)
Q Consensus 253 ~~~~~~~~~h~~~v~~l~~s~-~~~~l~s~~~dg~i~vwd~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v 330 (512)
-....++.||+..|+++.|.| .+.+|++++.|+.|+||++.+ +.+++++. +|..+|.+++|+++|..|++++.|+.+
T Consensus 204 kk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~-gH~k~Vrd~~~s~~g~~fLS~sfD~~l 282 (503)
T KOG0282|consen 204 KKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFK-GHRKPVRDASFNNCGTSFLSASFDRFL 282 (503)
T ss_pred HhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhh-cchhhhhhhhccccCCeeeeeecceee
Confidence 344567889999999999999 899999999999999999977 88999997 999999999999999999999999999
Q ss_pred EEEeCCCCceeEEeeCCccceeEEEEcCCC-CEEEEEeCCCcEEEEeCCCCceeeecCCCCCCCCCCceeEEEEEcCCCC
Q 010362 331 RIHGLKSGKLLKEFRGHSSYVNDAIFTNDG-SRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNP 409 (512)
Q Consensus 331 ~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 409 (512)
++||+++|+++..+.. ...++|+.|+|++ +.+++|+.|+.|+.||+++++.++.+. .|-+.|..+.|.+.+
T Consensus 283 KlwDtETG~~~~~f~~-~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd------~hLg~i~~i~F~~~g- 354 (503)
T KOG0282|consen 283 KLWDTETGQVLSRFHL-DKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYD------RHLGAILDITFVDEG- 354 (503)
T ss_pred eeeccccceEEEEEec-CCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHH------hhhhheeeeEEccCC-
Confidence 9999999999998873 4568999999998 889999999999999999999888876 456799999999988
Q ss_pred CeEEEEcCCCcEEEEecCCeEE-EEeeCCcccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCC---eeEEeccccC--
Q 010362 410 DHIVVCNKTSSIYIMTLQGQVV-KSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSG---KLEHLMKVHE-- 483 (512)
Q Consensus 410 ~~l~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~dg~i~iwd~~~~---~~~~~~~~h~-- 483 (512)
..+++++.++.+++|+.+-... +...... .....++..+|++.++++-+.|+.|.+|.+... ...+.+.+|.
T Consensus 355 ~rFissSDdks~riWe~~~~v~ik~i~~~~--~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~va 432 (503)
T KOG0282|consen 355 RRFISSSDDKSVRIWENRIPVPIKNIADPE--MHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVA 432 (503)
T ss_pred ceEeeeccCccEEEEEcCCCccchhhcchh--hccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceecc
Confidence 8999999999999999984433 3332222 334678899999999999999999999997643 2335677885
Q ss_pred CCeEEEEEcCCCCeEEEEECCCeEEEec
Q 010362 484 KDVIGVTHHPHRNLLATYGEDCTMKLWK 511 (512)
Q Consensus 484 ~~v~~v~~~p~~~~l~s~~~dg~i~iW~ 511 (512)
+--..+.|||||.+|++|+.||.+.+||
T Consensus 433 Gys~~v~fSpDG~~l~SGdsdG~v~~wd 460 (503)
T KOG0282|consen 433 GYSCQVDFSPDGRTLCSGDSDGKVNFWD 460 (503)
T ss_pred CceeeEEEcCCCCeEEeecCCccEEEee
Confidence 4566899999999999999999999997
No 62
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1.9e-32 Score=234.34 Aligned_cols=277 Identities=16% Similarity=0.264 Sum_probs=231.3
Q ss_pred ecCcCceEEEEECCCC-CEEEEEeCCCeEEEEEcCCCeeeccccccccceeeccCcceeEEEEcCCCCeEEEEeCCCeEE
Q 010362 210 FGTKSHAECARFSPDG-QFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQDGKIK 288 (512)
Q Consensus 210 ~~h~~~v~~~~~s~~~-~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~ 288 (512)
.||.+.|.|++=+|.. ..+|+|+.||.|+|||+...++... +..|.+.|..|++.. ..+++++.|.+|+
T Consensus 63 ~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~--------f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK 132 (433)
T KOG0268|consen 63 DGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRT--------FKAHEGLVRGICVTQ--TSFFTVGDDKTVK 132 (433)
T ss_pred cccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhhe--------eecccCceeeEEecc--cceEEecCCccee
Confidence 3999999999999987 7899999999999999988776654 445999999999987 6788999999999
Q ss_pred EEEccCCeeeEEeccccccCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeeCCccceeEEEEcCCC-CEEEEEe
Q 010362 289 VWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDG-SRVVTAS 367 (512)
Q Consensus 289 vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~ 367 (512)
.|.+.. ..+.++. ....+..+.-+..++.+++++. .|.|||.....++..+.-....|.++.|+|.. ..|++++
T Consensus 133 ~wk~~~-~p~~til--g~s~~~gIdh~~~~~~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~ 207 (433)
T KOG0268|consen 133 QWKIDG-PPLHTIL--GKSVYLGIDHHRKNSVFATCGE--QIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCA 207 (433)
T ss_pred eeeccC-Ccceeee--ccccccccccccccccccccCc--eeeecccccCCccceeecCCCceeEEecCCCcchheeeec
Confidence 999765 4666664 4566778877777788888875 58999998888999888777789999999955 4567777
Q ss_pred CCCcEEEEeCCCCceeeecCCCCCCCCCCceeEEEEEcCCCCCeEEEEcCCCcEEEEecCC--eEEEEeeCCcccCCcEE
Q 010362 368 SDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQG--QVVKSFSSGKREGGDFV 445 (512)
Q Consensus 368 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~~~~~~--~~~~~~~~~~~~~~~~~ 445 (512)
.|+.|.+||++++.++..... ....+.++|+| ....+++++.|..++.+|++. .++.. ...+...+.
T Consensus 208 sDrsIvLyD~R~~~Pl~KVi~-------~mRTN~IswnP-eafnF~~a~ED~nlY~~DmR~l~~p~~v---~~dhvsAV~ 276 (433)
T KOG0268|consen 208 SDRSIVLYDLRQASPLKKVIL-------TMRTNTICWNP-EAFNFVAANEDHNLYTYDMRNLSRPLNV---HKDHVSAVM 276 (433)
T ss_pred cCCceEEEecccCCccceeee-------eccccceecCc-cccceeeccccccceehhhhhhcccchh---hcccceeEE
Confidence 999999999999988776652 34668899999 558899999999999999983 33333 333567899
Q ss_pred EEEECCCCCEEEEEeCCCeEEEEEcCCCeeEEeccc-cCCCeEEEEEcCCCCeEEEEECCCeEEEecC
Q 010362 446 AACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKV-HEKDVIGVTHHPHRNLLATYGEDCTMKLWKP 512 (512)
Q Consensus 446 ~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~-h~~~v~~v~~~p~~~~l~s~~~dg~i~iW~~ 512 (512)
++.|||.|+-+++|+.|.+|+||..+.+.....+.. .-..|.||.|+.|.++++|||+|+.|++|++
T Consensus 277 dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka 344 (433)
T KOG0268|consen 277 DVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKA 344 (433)
T ss_pred EeccCCCcchhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcceeeeec
Confidence 999999999999999999999999988876555422 1246999999999999999999999999985
No 63
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=1.2e-30 Score=271.25 Aligned_cols=263 Identities=17% Similarity=0.257 Sum_probs=218.2
Q ss_pred CCeEEEEEcCCCeeeccccccccceeeccCcceeEEEEcCCCCeEEEEeCCCeEEEEEccCC----e----eeEEecccc
Q 010362 234 DGFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSG----Q----CLRRLERAH 305 (512)
Q Consensus 234 dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~vwd~~~~----~----~~~~~~~~~ 305 (512)
+|.+++|+.........+. ...+..|...|.+++|+|+++++|+|+.|+.|+||++.+. . ....+ .+
T Consensus 457 ~gl~~~~~~~~~~~~~~~~---~~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~--~~ 531 (793)
T PLN00181 457 EGLCKYLSFSKLRVKADLK---QGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVEL--AS 531 (793)
T ss_pred hhhhhhhcccceEEEEeec---cccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEe--cc
Confidence 6778888887655443322 1234559999999999999999999999999999997542 1 12222 24
Q ss_pred ccCeEEEEEec-CCCEEEEEeCCCcEEEEeCCCCceeEEeeCCccceeEEEEcC-CCCEEEEEeCCCcEEEEeCCCCcee
Q 010362 306 SEGVTSLVFSR-DGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTN-DGSRVVTASSDCTVKVWDLKSTDCL 383 (512)
Q Consensus 306 ~~~i~~~~~~~-~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~ 383 (512)
...+.+++|+| ++.+|++++.||+|++||+.+++.+..+.+|...|++++|+| ++.+|++|+.||+|++||++++...
T Consensus 532 ~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~ 611 (793)
T PLN00181 532 RSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSI 611 (793)
T ss_pred cCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEE
Confidence 56799999987 478999999999999999999999999999999999999997 7889999999999999999998877
Q ss_pred eecCCCCCCCCCCceeEEEEEcCCCCCeEEEEcCCCcEEEEecCCeE--EEEeeCCcccCCcEEEEEECCCCCEEEEEeC
Q 010362 384 QTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQV--VKSFSSGKREGGDFVAACVSPKGEWIYCVGE 461 (512)
Q Consensus 384 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~ 461 (512)
..+.. ...+.++.|.+.+...+++|+.|+.|++||++... ...+. .+...+..+.|. ++.++++++.
T Consensus 612 ~~~~~-------~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~---~h~~~V~~v~f~-~~~~lvs~s~ 680 (793)
T PLN00181 612 GTIKT-------KANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMI---GHSKTVSYVRFV-DSSTLVSSST 680 (793)
T ss_pred EEEec-------CCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEec---CCCCCEEEEEEe-CCCEEEEEEC
Confidence 76642 24688999977766999999999999999998432 22332 345678999997 7889999999
Q ss_pred CCeEEEEEcCC------CeeEEeccccCCCeEEEEEcCCCCeEEEEECCCeEEEecC
Q 010362 462 DRNLYCFSHQS------GKLEHLMKVHEKDVIGVTHHPHRNLLATYGEDCTMKLWKP 512 (512)
Q Consensus 462 dg~i~iwd~~~------~~~~~~~~~h~~~v~~v~~~p~~~~l~s~~~dg~i~iW~~ 512 (512)
|+.|++||+.. ..++..+.+|...+++++|+|++.+|++|+.||.|++|+.
T Consensus 681 D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~ 737 (793)
T PLN00181 681 DNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHK 737 (793)
T ss_pred CCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEEC
Confidence 99999999974 3577888999999999999999999999999999999973
No 64
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=3.5e-30 Score=237.52 Aligned_cols=244 Identities=33% Similarity=0.588 Sum_probs=216.2
Q ss_pred eeeccCcceeEEEEcCCCCeEEEEeCCCeEEEEEccCCeeeEEeccccccCeEEEEEecCCCEEEEEeCCCcEEEEeCCC
Q 010362 258 TFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKS 337 (512)
Q Consensus 258 ~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~i~d~~~ 337 (512)
++.+|..+|.+++|+|++++|++++.||.+++|++.+++....+. .|...+..+.|+|+++.+++++.||.|++||+.+
T Consensus 4 ~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~ 82 (289)
T cd00200 4 TLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLK-GHTGPVRDVAASADGTYLASGSSDKTIRLWDLET 82 (289)
T ss_pred HhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEe-cCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCc
Confidence 456799999999999999999999999999999999888777775 7888899999999999999999999999999998
Q ss_pred CceeEEeeCCccceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeecCCCCCCCCCCceeEEEEEcCCCCCeEEEEcC
Q 010362 338 GKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNK 417 (512)
Q Consensus 338 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~ 417 (512)
++....+..|...+.++.|+|+++++++++.||.|.+||+++++....+. .+...+.++.++|++ .++++++.
T Consensus 83 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~------~~~~~i~~~~~~~~~-~~l~~~~~ 155 (289)
T cd00200 83 GECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLR------GHTDWVNSVAFSPDG-TFVASSSQ 155 (289)
T ss_pred ccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEec------cCCCcEEEEEEcCcC-CEEEEEcC
Confidence 88888899999899999999998888888889999999999877766655 456789999999985 77888888
Q ss_pred CCcEEEEecC-CeEEEEeeCCcccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCeeEEeccccCCCeEEEEEcCCCC
Q 010362 418 TSSIYIMTLQ-GQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPHRN 496 (512)
Q Consensus 418 ~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~p~~~ 496 (512)
++.+.+||++ +.....+. .+...+.+++|+|+++.+++++.+|.|++||+.+++.+..+..|...+.++.|+|++.
T Consensus 156 ~~~i~i~d~~~~~~~~~~~---~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~ 232 (289)
T cd00200 156 DGTIKLWDLRTGKCVATLT---GHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGY 232 (289)
T ss_pred CCcEEEEEccccccceeEe---cCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCc
Confidence 9999999998 44444444 2345789999999999999999999999999999999999988999999999999988
Q ss_pred eEEEEECCCeEEEecC
Q 010362 497 LLATYGEDCTMKLWKP 512 (512)
Q Consensus 497 ~l~s~~~dg~i~iW~~ 512 (512)
++++++.||.|++|+.
T Consensus 233 ~~~~~~~~~~i~i~~~ 248 (289)
T cd00200 233 LLASGSEDGTIRVWDL 248 (289)
T ss_pred EEEEEcCCCcEEEEEc
Confidence 9998888999999984
No 65
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=1.7e-32 Score=233.33 Aligned_cols=265 Identities=22% Similarity=0.356 Sum_probs=222.4
Q ss_pred eeccCcccccccccccCccccceEEEecCcCceEEEEECCCCCEEEEEeCCCeEEEEEcCCCeeeccccccccceeeccC
Q 010362 184 DLFRGTAAMKQDVEDMYPTTLSHTIKFGTKSHAECARFSPDGQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHD 263 (512)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~ 263 (512)
..+.|..+....+||.....+.+.+. ||++.|.|+.|. .+.+++||.|.+|+|||+++++... ++.+|.
T Consensus 209 kiVSGlrDnTikiWD~n~~~c~~~L~-GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tge~l~--------tlihHc 277 (499)
T KOG0281|consen 209 KIVSGLRDNTIKIWDKNSLECLKILT-GHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTGEPLN--------TLIHHC 277 (499)
T ss_pred hhhcccccCceEEeccccHHHHHhhh-cCCCcEEeeecc--ceEEEecCCCceEEEEeccCCchhh--------HHhhhc
Confidence 34567777778899999888888886 999999999995 4599999999999999999998765 445699
Q ss_pred cceeEEEEcCCCCeEEEEeCCCeEEEEEccCCee--eEEeccccccCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCcee
Q 010362 264 ETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQC--LRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLL 341 (512)
Q Consensus 264 ~~v~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~ 341 (512)
..|..+.|+ +.++++++.|.++.+||+..... ......+|...|+.+.|+ .+++++++.|.+|++|++.+++.+
T Consensus 278 eaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd--~kyIVsASgDRTikvW~~st~efv 353 (499)
T KOG0281|consen 278 EAVLHLRFS--NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWSTSTCEFV 353 (499)
T ss_pred ceeEEEEEe--CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc--cceEEEecCCceEEEEeccceeee
Confidence 999999998 45999999999999999986642 222334899999999996 569999999999999999999999
Q ss_pred EEeeCCccceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeecCCCCCCCCCCceeEEEEEcCCCCCeEEEEcCCCcE
Q 010362 342 KEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSI 421 (512)
Q Consensus 342 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i 421 (512)
+++.+|...|.|+.+. ++++++|+.|.+|++||+..|.++..++ +|+.-|.++.|.. +.+++|..||.|
T Consensus 354 Rtl~gHkRGIAClQYr--~rlvVSGSSDntIRlwdi~~G~cLRvLe------GHEeLvRciRFd~---krIVSGaYDGki 422 (499)
T KOG0281|consen 354 RTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLE------GHEELVRCIRFDN---KRIVSGAYDGKI 422 (499)
T ss_pred hhhhcccccceehhcc--CeEEEecCCCceEEEEeccccHHHHHHh------chHHhhhheeecC---ceeeeccccceE
Confidence 9999999999888874 7899999999999999999999988876 7788899999864 789999999999
Q ss_pred EEEecCCeEEE-------EeeCCcccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCeeE
Q 010362 422 YIMTLQGQVVK-------SFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLE 476 (512)
Q Consensus 422 ~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~ 476 (512)
++||+...... .+.....+.+.+..+.| |...|++++.|.+|.|||..++.+-
T Consensus 423 kvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQF--D~fqIvsssHddtILiWdFl~~~~~ 482 (499)
T KOG0281|consen 423 KVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQF--DEFQIISSSHDDTILIWDFLNGPPS 482 (499)
T ss_pred EEEecccccCCcccccchHHHhhhhccceeEEEee--cceEEEeccCCCeEEEEEcCCCCcc
Confidence 99999743222 22222335567777777 5667999999999999999887654
No 66
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.1e-31 Score=254.11 Aligned_cols=243 Identities=21% Similarity=0.380 Sum_probs=220.2
Q ss_pred cCcceeEEEEcCCCCeEEEEeCCCeEEEEEccCCeeeEEeccccccCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCcee
Q 010362 262 HDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLL 341 (512)
Q Consensus 262 h~~~v~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~ 341 (512)
.+..|..++|+|...+++++-..|.|++||.+-+.++.++. .|.++|..++|+|++..+++|+.|-.|++|+.++.+++
T Consensus 8 kSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFd-eHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrcl 86 (1202)
T KOG0292|consen 8 KSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFD-EHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCL 86 (1202)
T ss_pred ccccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhh-ccCCccceeeecCCCCeEEecCCccEEEEEecccceeh
Confidence 56789999999999999999999999999999999999997 89999999999999999999999999999999999999
Q ss_pred EEeeCCccceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeecCCCCCCCCCCceeEEEEEcCCCCCeEEEEcCCCcE
Q 010362 342 KEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSI 421 (512)
Q Consensus 342 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i 421 (512)
.++.+|-..|+.+.|++.-.+++++|.|.+|+||+..+++++..+. +|...|.|..|+|.. +.+++++-|.+|
T Consensus 87 ftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavlt------GHnHYVMcAqFhptE-DlIVSaSLDQTV 159 (1202)
T KOG0292|consen 87 FTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLT------GHNHYVMCAQFHPTE-DLIVSASLDQTV 159 (1202)
T ss_pred hhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEe------cCceEEEeeccCCcc-ceEEEecccceE
Confidence 9999999999999999999999999999999999999999998876 788999999999987 899999999999
Q ss_pred EEEecCCeEEEEee---------------------------CCcccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCe
Q 010362 422 YIMTLQGQVVKSFS---------------------------SGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGK 474 (512)
Q Consensus 422 ~~~~~~~~~~~~~~---------------------------~~~~~~~~~~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~ 474 (512)
++||+.|-..+... ....|...|+-++|+|.-..|++|++|..|++|.+...+
T Consensus 160 RVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetK 239 (1202)
T KOG0292|consen 160 RVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETK 239 (1202)
T ss_pred EEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEecccc
Confidence 99999743221111 112345668889999999999999999999999987655
Q ss_pred --eEEeccccCCCeEEEEEcCCCCeEEEEECCCeEEEecC
Q 010362 475 --LEHLMKVHEKDVIGVTHHPHRNLLATYGEDCTMKLWKP 512 (512)
Q Consensus 475 --~~~~~~~h~~~v~~v~~~p~~~~l~s~~~dg~i~iW~~ 512 (512)
.+.+..+|.+.|.++-|||..++++|.|.|++|+|||.
T Consensus 240 aWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm 279 (1202)
T KOG0292|consen 240 AWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDM 279 (1202)
T ss_pred ceeehhhhcccCCcceEEecCccceeEecCCCccEEEEec
Confidence 45567899999999999999999999999999999984
No 67
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.6e-30 Score=215.42 Aligned_cols=247 Identities=20% Similarity=0.358 Sum_probs=214.5
Q ss_pred cceeeccCcceeEEEEcCCCCeEEEEeCCCeEEEEEccCCeeeEEeccccccCeEEEEEecCCCEEEEEeC--CCcEEEE
Q 010362 256 DETFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSF--DSTARIH 333 (512)
Q Consensus 256 ~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~--dg~v~i~ 333 (512)
.+.+......|.++.|+++|.++++++.|.++++||..+++.++++. .+...+..++|....+.++.++. |.+|+..
T Consensus 7 ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~-skkyG~~~~~Fth~~~~~i~sStk~d~tIryL 85 (311)
T KOG1446|consen 7 AKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTIN-SKKYGVDLACFTHHSNTVIHSSTKEDDTIRYL 85 (311)
T ss_pred ccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEee-cccccccEEEEecCCceEEEccCCCCCceEEE
Confidence 34455567899999999999999999999999999999999999997 67778999999887777777776 8899999
Q ss_pred eCCCCceeEEeeCCccceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeecCCCCCCCCCCceeEEEEEcCCCCCeEE
Q 010362 334 GLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIV 413 (512)
Q Consensus 334 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~ 413 (512)
++.+.+.++.|.||...|++++.+|-+..+++++.|++|++||++..++...+... .-...++.|.+ -+++
T Consensus 86 sl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~--------~~pi~AfDp~G-LifA 156 (311)
T KOG1446|consen 86 SLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLS--------GRPIAAFDPEG-LIFA 156 (311)
T ss_pred EeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecC--------CCcceeECCCC-cEEE
Confidence 99999999999999999999999999999999999999999999988776665432 23456788987 7888
Q ss_pred EEcCCCcEEEEecC---CeEEEEeeCCcccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCeeEEeccccCCCe---E
Q 010362 414 VCNKTSSIYIMTLQ---GQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDV---I 487 (512)
Q Consensus 414 ~~~~~~~i~~~~~~---~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v---~ 487 (512)
++.....|++||++ ..+...+.........+..+.|||||++++.++..+.+++.|.-+|..+..+..+...- .
T Consensus 157 ~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~ 236 (311)
T KOG1446|consen 157 LANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPL 236 (311)
T ss_pred EecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcce
Confidence 88888899999998 44556666655567789999999999999999999999999999999999888775432 5
Q ss_pred EEEEcCCCCeEEEEECCCeEEEecC
Q 010362 488 GVTHHPHRNLLATYGEDCTMKLWKP 512 (512)
Q Consensus 488 ~v~~~p~~~~l~s~~~dg~i~iW~~ 512 (512)
..+|+||++++++|+.||+|.+|+.
T Consensus 237 ~a~ftPds~Fvl~gs~dg~i~vw~~ 261 (311)
T KOG1446|consen 237 SATFTPDSKFVLSGSDDGTIHVWNL 261 (311)
T ss_pred eEEECCCCcEEEEecCCCcEEEEEc
Confidence 7789999999999999999999984
No 68
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=4.3e-30 Score=214.95 Aligned_cols=274 Identities=17% Similarity=0.251 Sum_probs=219.1
Q ss_pred ecCcCceEEEEECC-CCCEEEEEeCCCeEEEEEcCCC-eeeccccccccceeeccCcceeEEEEcCCCCeEEEEeCCCeE
Q 010362 210 FGTKSHAECARFSP-DGQFLVSCSFDGFIEVWDYLSG-KLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQDGKI 287 (512)
Q Consensus 210 ~~h~~~v~~~~~s~-~~~~l~sg~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i 287 (512)
..-.+.|.+++||| ...++++||.||+|++|+++.. .... +....|.++|.+++|+.||..+++|+.|+.+
T Consensus 24 ~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~-------ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~ 96 (347)
T KOG0647|consen 24 NPPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVP-------KAQQSHDGPVLDVCWSDDGSKVFSGGCDKQA 96 (347)
T ss_pred CCcccchheeEeccccCceEEecccCCceEEEEEecCCcccc-------hhhhccCCCeEEEEEccCCceEEeeccCCce
Confidence 35678899999999 5667779999999999999773 3332 2233499999999999999999999999999
Q ss_pred EEEEccCCeeeEEeccccccCeEEEEEecCCC--EEEEEeCCCcEEEEeCCCCceeEEeeCCccceeEEEEcCCCCEEEE
Q 010362 288 KVWRIRSGQCLRRLERAHSEGVTSLVFSRDGS--QILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVT 365 (512)
Q Consensus 288 ~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 365 (512)
++||+.+++.. .+. .|.++|.++.|-+... .|++|+.|.+|+.||++...++.++.- ...+.++..- ...+++
T Consensus 97 k~wDL~S~Q~~-~v~-~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~L-PeRvYa~Dv~--~pm~vV 171 (347)
T KOG0647|consen 97 KLWDLASGQVS-QVA-AHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQL-PERVYAADVL--YPMAVV 171 (347)
T ss_pred EEEEccCCCee-eee-ecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeec-cceeeehhcc--CceeEE
Confidence 99999999654 443 6999999999988655 899999999999999999998888773 4456666553 347888
Q ss_pred EeCCCcEEEEeCCCCceeee-cCCCCCCCCCCceeEEEEEcCCCCCeEEEEcCCCcEEEEecCCe---EEEEeeCCcc--
Q 010362 366 ASSDCTVKVWDLKSTDCLQT-FKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQ---VVKSFSSGKR-- 439 (512)
Q Consensus 366 ~~~dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~---~~~~~~~~~~-- 439 (512)
+..+..|.+|+++.+..... ...+ ....+.+++..++. +..+.|+-+|++.+..++.. ....+..+..
T Consensus 172 ata~r~i~vynL~n~~te~k~~~Sp-----Lk~Q~R~va~f~d~-~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~ 245 (347)
T KOG0647|consen 172 ATAERHIAVYNLENPPTEFKRIESP-----LKWQTRCVACFQDK-DGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTN 245 (347)
T ss_pred EecCCcEEEEEcCCCcchhhhhcCc-----ccceeeEEEEEecC-CceEeeeecceEEEEecCCCCccCceeEEEeccCC
Confidence 88899999999987643322 2222 35678999999888 55599999999999988742 1222222221
Q ss_pred ----cCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCeeEEeccccCCCeEEEEEcCCCCeEEEE
Q 010362 440 ----EGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPHRNLLATY 501 (512)
Q Consensus 440 ----~~~~~~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~ 501 (512)
.-..|..++|+|.-..|++.+.||++.+||-.....++..+.|..+|++.+|+.+|.++|-+
T Consensus 246 ~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifaYA 311 (347)
T KOG0647|consen 246 SVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGSIFAYA 311 (347)
T ss_pred CCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhccCcCCCccceeEecCCCCEEEEE
Confidence 12457789999999999999999999999999888888888999999999999999988744
No 69
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=3.8e-30 Score=220.60 Aligned_cols=266 Identities=18% Similarity=0.284 Sum_probs=217.7
Q ss_pred eeccCcccccccccccCccccceEEEecCcCceEEEEECCCCCEEEEEeCCCeEEEEEcCCCeeeccccccccceeeccC
Q 010362 184 DLFRGTAAMKQDVEDMYPTTLSHTIKFGTKSHAECARFSPDGQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHD 263 (512)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~ 263 (512)
-+..|..+...-+|+.........+. +|++.|+|+.||.+|.+||||+.+|.|.||+..++.....+.. .-
T Consensus 78 l~aTGGgDD~AflW~~~~ge~~~elt-gHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~--------e~ 148 (399)
T KOG0296|consen 78 LVATGGGDDLAFLWDISTGEFAGELT-GHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQ--------EV 148 (399)
T ss_pred eEEecCCCceEEEEEccCCcceeEec-CCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEeec--------cc
Confidence 34455566677788888888777775 9999999999999999999999999999999999987765532 45
Q ss_pred cceeEEEEcCCCCeEEEEeCCCeEEEEEccCCeeeEEeccccccCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEE
Q 010362 264 ETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKE 343 (512)
Q Consensus 264 ~~v~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~ 343 (512)
..|.-+.|+|.+..|+.|+.||.+.+|.+.++...+.+. +|..++++=.|.|+|+.++++..||+|++||+.+++++..
T Consensus 149 ~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~-Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~ 227 (399)
T KOG0296|consen 149 EDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMS-GHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHK 227 (399)
T ss_pred CceEEEEecccccEEEeecCCCcEEEEECCCcceeeEec-CCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEE
Confidence 678899999999999999999999999999987667776 8999999999999999999999999999999999887766
Q ss_pred eeCC---------------------------------------------------ccceeEEE---EcCCCCEEEEEeCC
Q 010362 344 FRGH---------------------------------------------------SSYVNDAI---FTNDGSRVVTASSD 369 (512)
Q Consensus 344 ~~~~---------------------------------------------------~~~v~~~~---~~~~~~~l~~~~~d 369 (512)
+... ...+.|+. ++..=.+.++|+.|
T Consensus 228 ~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vd 307 (399)
T KOG0296|consen 228 ITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVD 307 (399)
T ss_pred ecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhccccc
Confidence 5410 00111122 22223466788899
Q ss_pred CcEEEEeCCCCceeeecCCCCCCCCCCceeEEEEEcCCCCCeEEEEcCCCcEEEEecC-CeEEEEeeCCcccCCcEEEEE
Q 010362 370 CTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQ-GQVVKSFSSGKREGGDFVAAC 448 (512)
Q Consensus 370 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 448 (512)
|+|.|||+...+....+. |...|..+.|.+ ..++++++.+|.|+.||.+ |+....+..+ ...|.+++
T Consensus 308 G~i~iyD~a~~~~R~~c~-------he~~V~~l~w~~--t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH---~~~Il~f~ 375 (399)
T KOG0296|consen 308 GTIAIYDLAASTLRHICE-------HEDGVTKLKWLN--TDYLLTACANGKVRQWDARTGQLKFTYTGH---QMGILDFA 375 (399)
T ss_pred ceEEEEecccchhheecc-------CCCceEEEEEcC--cchheeeccCceEEeeeccccceEEEEecC---chheeEEE
Confidence 999999998776555544 566899999998 3899999999999999999 5555555553 45699999
Q ss_pred ECCCCCEEEEEeCCCeEEEEEcC
Q 010362 449 VSPKGEWIYCVGEDRNLYCFSHQ 471 (512)
Q Consensus 449 ~s~~g~~l~~g~~dg~i~iwd~~ 471 (512)
++|+++++++++.|++.+||+..
T Consensus 376 ls~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 376 LSPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred EcCCCcEEEEecCCCeEEEEecC
Confidence 99999999999999999999864
No 70
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.98 E-value=1.5e-28 Score=197.35 Aligned_cols=295 Identities=20% Similarity=0.324 Sum_probs=233.4
Q ss_pred cCcCceEEEEECCCCCEEEEEeCCCeEEEEEcCCCeee---cccccc----ccceeeccCcceeEEEEcCCCCeEEEEeC
Q 010362 211 GTKSHAECARFSPDGQFLVSCSFDGFIEVWDYLSGKLK---KDLQYQ----ADETFMMHDETVLCIEFSRDSEMLASGSQ 283 (512)
Q Consensus 211 ~h~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~---~~~~~~----~~~~~~~h~~~v~~l~~s~~~~~l~s~~~ 283 (512)
..+..|.+++|+|.|.+.|+|+...+.+|.....-... .....+ ..+.-+.|.+.|.|.+|+|+|.++++|+.
T Consensus 30 ~dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgsn 109 (350)
T KOG0641|consen 30 EDSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGSN 109 (350)
T ss_pred cchhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecCC
Confidence 66778999999999999999999999998864321110 000001 11233458999999999999999999999
Q ss_pred CCeEEEEEccCCeee-----EEeccccccCeEEEEEecC----CCEEEEEe-CCCcEEEEeCCCCceeEEeeCCccceeE
Q 010362 284 DGKIKVWRIRSGQCL-----RRLERAHSEGVTSLVFSRD----GSQILSTS-FDSTARIHGLKSGKLLKEFRGHSSYVND 353 (512)
Q Consensus 284 dg~i~vwd~~~~~~~-----~~~~~~~~~~i~~~~~~~~----~~~l~~~~-~dg~v~i~d~~~~~~~~~~~~~~~~v~~ 353 (512)
|.+|++..+....+. ..+. .|.+.|..++|..+ +..|++++ .|..|++-|..+|+....+.+|.+.|.+
T Consensus 110 dk~ik~l~fn~dt~~~~g~dle~n-mhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtghila 188 (350)
T KOG0641|consen 110 DKTIKVLPFNADTCNATGHDLEFN-MHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTGHILA 188 (350)
T ss_pred CceEEEEecccccccccCcceeee-ecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCcccEEE
Confidence 999999876543321 2343 68899999999753 45666654 4678888899999999999999999876
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEeCCCCceeeecCCCCCCCC-CCceeEEEEEcCCCCCeEEEEcCCCcEEEEecCCe-EE
Q 010362 354 AIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRG-GDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQ-VV 431 (512)
Q Consensus 354 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~-~~ 431 (512)
+ ++-+|-.+++|+.|.+|++||++-..++.++.....-.+ ....|.++++.|.+ .+++++..|....+||++|. .+
T Consensus 189 l-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsg-rll~sg~~dssc~lydirg~r~i 266 (350)
T KOG0641|consen 189 L-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSG-RLLASGHADSSCMLYDIRGGRMI 266 (350)
T ss_pred E-EEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCc-ceeeeccCCCceEEEEeeCCcee
Confidence 5 344677899999999999999999888887765432222 34678999999998 99999999999999999954 55
Q ss_pred EEeeCCcccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCC----eeEEeccccCCCeEEEEEcCCCCeEEEEECCCeE
Q 010362 432 KSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSG----KLEHLMKVHEKDVIGVTHHPHRNLLATYGEDCTM 507 (512)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~dg~i~iwd~~~~----~~~~~~~~h~~~v~~v~~~p~~~~l~s~~~dg~i 507 (512)
..+.. +...+.++.|||...|+++++.|..|++-|+... -++.....|...+..+.|+|..--+++.+.|.++
T Consensus 267 q~f~p---hsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~ 343 (350)
T KOG0641|consen 267 QRFHP---HSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKTA 343 (350)
T ss_pred eeeCC---CccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEecCccceeeeccCcceE
Confidence 55544 4567999999999999999999999999998642 2344556799999999999999889999999999
Q ss_pred EEec
Q 010362 508 KLWK 511 (512)
Q Consensus 508 ~iW~ 511 (512)
.+|-
T Consensus 344 tlwa 347 (350)
T KOG0641|consen 344 TLWA 347 (350)
T ss_pred EEec
Confidence 9994
No 71
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.98 E-value=5.6e-30 Score=246.22 Aligned_cols=277 Identities=22% Similarity=0.374 Sum_probs=239.4
Q ss_pred EEEecCcCceEEEEECCCCCEEEEEeCCCeEEEEEcCCCeeeccccccccceeeccCcceeEEEEcCCCCeEEEEeCCCe
Q 010362 207 TIKFGTKSHAECARFSPDGQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQDGK 286 (512)
Q Consensus 207 ~~~~~h~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~ 286 (512)
.....+...+.|..|. +.++++++.|++|++||..++..... .+.||.+.|.++++..-+.++++|+.|.+
T Consensus 202 ~~~~~~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~-------~l~GH~g~V~~l~~~~~~~~lvsgS~D~t 272 (537)
T KOG0274|consen 202 VLLGTDDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILT-------RLVGHFGGVWGLAFPSGGDKLVSGSTDKT 272 (537)
T ss_pred eecccCcchhhhheee--cCeEEecCCCceeEEeecccceEEEe-------eccCCCCCceeEEEecCCCEEEEEecCCc
Confidence 3333477888999998 66899999999999999988876653 25679999999999987889999999999
Q ss_pred EEEEEccCCeeeEEeccccccCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeeCCccceeEEEEcCCCCEEEEE
Q 010362 287 IKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTA 366 (512)
Q Consensus 287 i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 366 (512)
+++||..+|++...+. +|...|.++... ...+++|+.|.+|++|++.++..+..+.+|..+|+++..+ +.++++|
T Consensus 273 ~rvWd~~sg~C~~~l~-gh~stv~~~~~~--~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsg 347 (537)
T KOG0274|consen 273 ERVWDCSTGECTHSLQ-GHTSSVRCLTID--PFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSG 347 (537)
T ss_pred EEeEecCCCcEEEEec-CCCceEEEEEcc--CceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--CCEEEEE
Confidence 9999999999999997 899999999876 4578889999999999999999999999999999999998 7799999
Q ss_pred eCCCcEEEEeCCCCceeeecCCCCCCCCCCceeEEEEEcCCCCCeEEEEcCCCcEEEEecCCe--EEEEeeCCcccCCcE
Q 010362 367 SSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQ--VVKSFSSGKREGGDF 444 (512)
Q Consensus 367 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~~~ 444 (512)
+.||+|++||+.+++++.++. +|...|+++.+.+. ..+++|+.|+.|++||+++. ....+..+ ..-+
T Consensus 348 s~d~~v~VW~~~~~~cl~sl~------gH~~~V~sl~~~~~--~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h---~~~v 416 (537)
T KOG0274|consen 348 SYDGTVKVWDPRTGKCLKSLS------GHTGRVYSLIVDSE--NRLLSGSLDTTIKVWDLRTKRKCIHTLQGH---TSLV 416 (537)
T ss_pred ecCceEEEEEhhhceeeeeec------CCcceEEEEEecCc--ceEEeeeeccceEeecCCchhhhhhhhcCC---cccc
Confidence 999999999999999888876 68899999987765 78999999999999999966 33333322 2222
Q ss_pred EEEEECCCCCEEEEEeCCCeEEEEEcCCCeeEEeccc-cCCCeEEEEEcCCCCeEEEEECCCeEEEecC
Q 010362 445 VAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKV-HEKDVIGVTHHPHRNLLATYGEDCTMKLWKP 512 (512)
Q Consensus 445 ~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~-h~~~v~~v~~~p~~~~l~s~~~dg~i~iW~~ 512 (512)
......+++|++++.||.|++||..++++++++.+ |...|..+++. ...+++++.||++++||.
T Consensus 417 --~~l~~~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~--~~~il~s~~~~~~~l~dl 481 (537)
T KOG0274|consen 417 --SSLLLRDNFLVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSALALG--KEEILCSSDDGSVKLWDL 481 (537)
T ss_pred --cccccccceeEeccccccEEEeecccCceeeeeccCCcccEEEeecC--cceEEEEecCCeeEEEec
Confidence 44456789999999999999999999999999998 67889988886 567889999999999984
No 72
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.98 E-value=1.4e-29 Score=212.75 Aligned_cols=274 Identities=19% Similarity=0.252 Sum_probs=223.3
Q ss_pred ecCcCceEEEEECCCCCEEEEEeCCCeEEEEEcCCCeeeccccccccceeeccCcceeEEEEcCCCCeEEEEeCCCeEEE
Q 010362 210 FGTKSHAECARFSPDGQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQDGKIKV 289 (512)
Q Consensus 210 ~~h~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~v 289 (512)
....+.|+.+.|+|.++.|+++++||++++||+........+. |..++.+++|.++ ..+++|+.||.|+.
T Consensus 10 npP~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~---------~~~plL~c~F~d~-~~~~~G~~dg~vr~ 79 (323)
T KOG1036|consen 10 NPPEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFK---------HGAPLLDCAFADE-STIVTGGLDGQVRR 79 (323)
T ss_pred CCChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhee---------cCCceeeeeccCC-ceEEEeccCceEEE
Confidence 3556789999999999999999999999999998876555444 9999999999974 56889999999999
Q ss_pred EEccCCeeeEEeccccccCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeeCCccceeEEEEcCCCCEEEEEeCC
Q 010362 290 WRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSD 369 (512)
Q Consensus 290 wd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 369 (512)
+|+.++.....- .|..+|.|+.+++....+++|+.|++|++||.+.......+... ..|.++... |+.|++|+.|
T Consensus 80 ~Dln~~~~~~ig--th~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~-kkVy~~~v~--g~~LvVg~~~ 154 (323)
T KOG1036|consen 80 YDLNTGNEDQIG--THDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQG-KKVYCMDVS--GNRLVVGTSD 154 (323)
T ss_pred EEecCCcceeec--cCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccccC-ceEEEEecc--CCEEEEeecC
Confidence 999998865443 69999999999998889999999999999999875555555433 368777665 6789999999
Q ss_pred CcEEEEeCCCCceeeecCCCCCCCCCCceeEEEEEcCCCCCeEEEEcCCCcEEEEecCCe-----EEEEeeCC------c
Q 010362 370 CTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQ-----VVKSFSSG------K 438 (512)
Q Consensus 370 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~-----~~~~~~~~------~ 438 (512)
..+.+||+++.....+... ....-.+.++++.|.+ .-+++++-+|++.+-.++.. ..-.+..+ .
T Consensus 155 r~v~iyDLRn~~~~~q~re----S~lkyqtR~v~~~pn~-eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~ 229 (323)
T KOG1036|consen 155 RKVLIYDLRNLDEPFQRRE----SSLKYQTRCVALVPNG-EGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDT 229 (323)
T ss_pred ceEEEEEcccccchhhhcc----ccceeEEEEEEEecCC-CceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCc
Confidence 9999999998764432221 2356789999999954 78899999999988777633 11111111 1
Q ss_pred ccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCeeEEeccccCCCeEEEEEcCCCCeEEEEEC
Q 010362 439 REGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPHRNLLATYGE 503 (512)
Q Consensus 439 ~~~~~~~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~~~ 503 (512)
....+|.+++|+|--..+++|+.||.|.+||..+.+.+..+......|.+++|+.+|..||.++.
T Consensus 230 ~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 230 EIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred eEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccCCCCceEEEEeccCCCeEEEEec
Confidence 12357889999999999999999999999999999999998877788999999999999999873
No 73
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.98 E-value=8.9e-30 Score=224.79 Aligned_cols=290 Identities=20% Similarity=0.298 Sum_probs=236.2
Q ss_pred ecCcCceEEEEECCCCCEEEEEeCCCeEEEEEcCCCeeeccc-c--------cccccee-eccCcceeEEEEcCCCCeEE
Q 010362 210 FGTKSHAECARFSPDGQFLVSCSFDGFIEVWDYLSGKLKKDL-Q--------YQADETF-MMHDETVLCIEFSRDSEMLA 279 (512)
Q Consensus 210 ~~h~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~-~--------~~~~~~~-~~h~~~v~~l~~s~~~~~l~ 279 (512)
..|.-+|.|++++|++.+.++++.||+|.=|++.+++....+ + +.+...- .+|...|.+++.++||++||
T Consensus 139 ~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgkyla 218 (479)
T KOG0299|consen 139 GKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGKYLA 218 (479)
T ss_pred ccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCcEEE
Confidence 389999999999999999999999999999999888754211 1 1111111 37999999999999999999
Q ss_pred EEeCCCeEEEEEccCCeeeEEeccccccCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeeCCccceeEEEEcCC
Q 010362 280 SGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTND 359 (512)
Q Consensus 280 s~~~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~ 359 (512)
+|+.|..|.||+.++.+.+..+. +|.+.|.+++|-...+.+++++.|+.|++|++.....+.++-+|.+.|.++....-
T Consensus 219 tgg~d~~v~Iw~~~t~ehv~~~~-ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~IdaL~r 297 (479)
T KOG0299|consen 219 TGGRDRHVQIWDCDTLEHVKVFK-GHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGIDALSR 297 (479)
T ss_pred ecCCCceEEEecCcccchhhccc-ccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCccceeeechhcc
Confidence 99999999999999999999987 99999999999998899999999999999999999999999999999999998888
Q ss_pred CCEEEEEeCCCcEEEEeCCCCceeeecCCCCCCCCCCceeEEEEEcCCCCCeEEEEcCCCcEEEEecC-CeEEEEeeCCc
Q 010362 360 GSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQ-GQVVKSFSSGK 438 (512)
Q Consensus 360 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~~~~~-~~~~~~~~~~~ 438 (512)
++.+-+|+.|+++++|++...... . ..++.+.+.++++..+ ..+++|+.+|.|.+|++. .+++......+
T Consensus 298 eR~vtVGgrDrT~rlwKi~eesql-i------frg~~~sidcv~~In~--~HfvsGSdnG~IaLWs~~KKkplf~~~~AH 368 (479)
T KOG0299|consen 298 ERCVTVGGRDRTVRLWKIPEESQL-I------FRGGEGSIDCVAFIND--EHFVSGSDNGSIALWSLLKKKPLFTSRLAH 368 (479)
T ss_pred cceEEeccccceeEEEecccccee-e------eeCCCCCeeeEEEecc--cceeeccCCceEEEeeecccCceeEeeccc
Confidence 877777889999999999543221 1 1345778999998765 689999999999999997 34443333221
Q ss_pred c---------cCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCC----eeEEeccccCCCeEEEEEcCCCCeEE-EEECC
Q 010362 439 R---------EGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSG----KLEHLMKVHEKDVIGVTHHPHRNLLA-TYGED 504 (512)
Q Consensus 439 ~---------~~~~~~~~~~s~~g~~l~~g~~dg~i~iwd~~~~----~~~~~~~~h~~~v~~v~~~p~~~~l~-s~~~d 504 (512)
. ....+++++..|..+++++|+.+|.|++|-+.++ +++..+. -.+-|++++|+++|..++ ..|..
T Consensus 369 gv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls-~~GfVNsl~f~~sgk~ivagiGkE 447 (479)
T KOG0299|consen 369 GVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLS-LVGFVNSLAFSNSGKRIVAGIGKE 447 (479)
T ss_pred cccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecc-cccEEEEEEEccCCCEEEEecccc
Confidence 1 1126889999999999999999999999999887 4555555 568899999999998544 44544
Q ss_pred CeEEEe
Q 010362 505 CTMKLW 510 (512)
Q Consensus 505 g~i~iW 510 (512)
..+--|
T Consensus 448 hRlGRW 453 (479)
T KOG0299|consen 448 HRLGRW 453 (479)
T ss_pred ccccee
Confidence 444333
No 74
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=6e-30 Score=227.59 Aligned_cols=275 Identities=21% Similarity=0.312 Sum_probs=225.7
Q ss_pred cCceEEEEECCCCC-EEEEEeCCCeEEEEEcCCCeeeccccccccceeeccCcceeEEEEcCCCCeEEEEeCCCeEEEEE
Q 010362 213 KSHAECARFSPDGQ-FLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWR 291 (512)
Q Consensus 213 ~~~v~~~~~s~~~~-~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~vwd 291 (512)
.+.|++++|||... -+|+.+ .-.+.||+..+......+. .....|.++.|..||++||.|+..|.|+|||
T Consensus 26 ~~~vssl~fsp~~P~d~aVt~-S~rvqly~~~~~~~~k~~s--------rFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD 96 (487)
T KOG0310|consen 26 HNSVSSLCFSPKHPYDFAVTS-SVRVQLYSSVTRSVRKTFS--------RFKDVVYSVDFRSDGRLLAAGDESGHVKVFD 96 (487)
T ss_pred cCcceeEecCCCCCCceEEec-ccEEEEEecchhhhhhhHH--------hhccceeEEEeecCCeEEEccCCcCcEEEec
Confidence 45799999999544 355544 4679999987765544332 2668899999999999999999999999999
Q ss_pred ccCCeeeEEeccccccCeEEEEEecC-CCEEEEEeCCCcEEEEeCCCCceeEEeeCCccceeEEEEcCC-CCEEEEEeCC
Q 010362 292 IRSGQCLRRLERAHSEGVTSLVFSRD-GSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTND-GSRVVTASSD 369 (512)
Q Consensus 292 ~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d 369 (512)
+.+...++.+. .|+.++..+.|+|+ +..+++|+.|+.+++||+.+......+.+|...|.|.+|+|- +..++||+.|
T Consensus 97 ~k~r~iLR~~~-ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYD 175 (487)
T KOG0310|consen 97 MKSRVILRQLY-AHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYD 175 (487)
T ss_pred cccHHHHHHHh-hccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCC
Confidence 77766666675 89999999999995 556778888899999999988877789999999999999995 4578999999
Q ss_pred CcEEEEeCCCC-ceeeecCCCCCCCCCCceeEEEEEcCCCCCeEEEEcCCCcEEEEecC-CeEEEEeeCCcccCCcEEEE
Q 010362 370 CTVKVWDLKST-DCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQ-GQVVKSFSSGKREGGDFVAA 447 (512)
Q Consensus 370 g~i~iwd~~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~ 447 (512)
|+|++||++.. ..+.++ .|..+|.++.+.|.+ ..++++ ....+++||+. |......... |...++|+
T Consensus 176 g~vrl~DtR~~~~~v~el-------nhg~pVe~vl~lpsg-s~iasA-gGn~vkVWDl~~G~qll~~~~~--H~KtVTcL 244 (487)
T KOG0310|consen 176 GKVRLWDTRSLTSRVVEL-------NHGCPVESVLALPSG-SLIASA-GGNSVKVWDLTTGGQLLTSMFN--HNKTVTCL 244 (487)
T ss_pred ceEEEEEeccCCceeEEe-------cCCCceeeEEEcCCC-CEEEEc-CCCeEEEEEecCCceehhhhhc--ccceEEEE
Confidence 99999999986 444444 377899999999986 455544 45689999998 4433322221 56779999
Q ss_pred EECCCCCEEEEEeCCCeEEEEEcCCCeeEEeccccCCCeEEEEEcCCCCeEEEEECCCeEEE
Q 010362 448 CVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPHRNLLATYGEDCTMKL 509 (512)
Q Consensus 448 ~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~~~dg~i~i 509 (512)
++..++..|++|+-||.|++||+.+-+.+..+. -.++|.+++.+|+++.++.|..||.+.+
T Consensus 245 ~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~-~~~pvLsiavs~dd~t~viGmsnGlv~~ 305 (487)
T KOG0310|consen 245 RLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWK-YPGPVLSIAVSPDDQTVVIGMSNGLVSI 305 (487)
T ss_pred EeecCCceEeecccccceEEEEccceEEEEeee-cccceeeEEecCCCceEEEecccceeee
Confidence 999999999999999999999999999988886 5789999999999999999999998754
No 75
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=1.6e-30 Score=212.16 Aligned_cols=252 Identities=17% Similarity=0.244 Sum_probs=209.1
Q ss_pred cceEEEecCcCceEEEEECCC-CCEEEEEeCCCeEEEEEcCCCeeeccccccccceeeccCcceeEEEEcC-CCCeEEEE
Q 010362 204 LSHTIKFGTKSHAECARFSPD-GQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSR-DSEMLASG 281 (512)
Q Consensus 204 ~~~~~~~~h~~~v~~~~~s~~-~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~-~~~~l~s~ 281 (512)
....-.+...+.+..++|+++ .+.+++++.||+++|||..... .|...++.|...|.++.|++ ++..++++
T Consensus 51 i~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s-------~Pi~~~kEH~~EV~Svdwn~~~r~~~lts 123 (311)
T KOG0277|consen 51 IQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPS-------KPIHKFKEHKREVYSVDWNTVRRRIFLTS 123 (311)
T ss_pred eEEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccCCCC-------cchhHHHhhhhheEEeccccccceeEEee
Confidence 333344577889999999995 4678888999999999943322 35567788999999999999 56678888
Q ss_pred eCCCeEEEEEccCCeeeEEeccccccCeEEEEEec-CCCEEEEEeCCCcEEEEeCCCCceeEEeeCCccceeEEEEcC-C
Q 010362 282 SQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSR-DGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTN-D 359 (512)
Q Consensus 282 ~~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~-~ 359 (512)
|.|++|++|+..-+..+.++. +|..-|....|+| .++.+++++.|+++++||++.......+..|...+.|+.|+. +
T Consensus 124 SWD~TiKLW~~~r~~Sv~Tf~-gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~ 202 (311)
T KOG0277|consen 124 SWDGTIKLWDPNRPNSVQTFN-GHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYN 202 (311)
T ss_pred ccCCceEeecCCCCcceEeec-CCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccC
Confidence 999999999999999999997 8999999999999 578999999999999999987655555899999999999987 5
Q ss_pred CCEEEEEeCCCcEEEEeCCCCceeeecCCCCCCCCCCceeEEEEEcCCCCCeEEEEcCCCcEEEEecC-CeEEEEeeCCc
Q 010362 360 GSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQ-GQVVKSFSSGK 438 (512)
Q Consensus 360 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~~~~~-~~~~~~~~~~~ 438 (512)
.+.++||+.|+.|++||+++.+ .+...+.+|.-.|..+.++|....++++++.|-++++||.. +........
T Consensus 203 ~~vl~Tg~vd~~vr~wDir~~r-----~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~-- 275 (311)
T KOG0277|consen 203 HNVLATGGVDNLVRGWDIRNLR-----TPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVD-- 275 (311)
T ss_pred CcEEEecCCCceEEEEehhhcc-----ccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhh--
Confidence 6788999999999999999865 23344568999999999999999999999999999999987 222222111
Q ss_pred ccCCcEEEEEECC-CCCEEEEEeCCCeEEEEEc
Q 010362 439 REGGDFVAACVSP-KGEWIYCVGEDRNLYCFSH 470 (512)
Q Consensus 439 ~~~~~~~~~~~s~-~g~~l~~g~~dg~i~iwd~ 470 (512)
.|...+..+.||+ ++.++++.+.|+.++||+.
T Consensus 276 ~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 276 HHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred ccceEEeccccccccCceeeecccccceeeecc
Confidence 2345577888876 6789999999999999984
No 76
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=1.6e-30 Score=246.58 Aligned_cols=240 Identities=20% Similarity=0.356 Sum_probs=200.6
Q ss_pred ccCcceeEEEEcCCCCeEEEEeCCCeEEEEEccCCe--------------------------------------------
Q 010362 261 MHDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQ-------------------------------------------- 296 (512)
Q Consensus 261 ~h~~~v~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~-------------------------------------------- 296 (512)
.|.+.|+++.||+||+|||+||.||.|+||.+...+
T Consensus 265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~ 344 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQ 344 (712)
T ss_pred ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccC
Confidence 599999999999999999999999999999876500
Q ss_pred ----------------eeEEeccccccCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeeCCccceeEEEEcC-C
Q 010362 297 ----------------CLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTN-D 359 (512)
Q Consensus 297 ----------------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~-~ 359 (512)
++..+ .+|.+.|.++.|+.+ ++|++++.|.+|++|++...+++..|. |...|+|++|+| |
T Consensus 345 s~~~~~p~~~f~f~ekP~~ef-~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFnPvD 421 (712)
T KOG0283|consen 345 SPCVLLPLKAFVFSEKPFCEF-KGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFNPVD 421 (712)
T ss_pred CccccCCCccccccccchhhh-hccchhheecccccC-CeeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEecccC
Confidence 11112 378999999999975 589999999999999999999999997 999999999999 7
Q ss_pred CCEEEEEeCCCcEEEEeCCCCceeeecCCCCCCCCCCceeEEEEEcCCCCCeEEEEcCCCcEEEEecCCeEEEEeeC---
Q 010362 360 GSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQVVKSFSS--- 436 (512)
Q Consensus 360 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~--- 436 (512)
.+++++|+-||.|+||++...+...-.. ...-|+++++.|+| +..++|+.+|.+++|+..+.....-..
T Consensus 422 DryFiSGSLD~KvRiWsI~d~~Vv~W~D-------l~~lITAvcy~PdG-k~avIGt~~G~C~fY~t~~lk~~~~~~I~~ 493 (712)
T KOG0283|consen 422 DRYFISGSLDGKVRLWSISDKKVVDWND-------LRDLITAVCYSPDG-KGAVIGTFNGYCRFYDTEGLKLVSDFHIRL 493 (712)
T ss_pred CCcEeecccccceEEeecCcCeeEeehh-------hhhhheeEEeccCC-ceEEEEEeccEEEEEEccCCeEEEeeeEee
Confidence 8899999999999999998876655433 23589999999997 999999999999999998654432211
Q ss_pred ---CcccCCcEEEEEECCC-CCEEEEEeCCCeEEEEEcCCCeeEEeccccCC--CeEEEEEcCCCCeEEEEECCCeEEEe
Q 010362 437 ---GKREGGDFVAACVSPK-GEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEK--DVIGVTHHPHRNLLATYGEDCTMKLW 510 (512)
Q Consensus 437 ---~~~~~~~~~~~~~s~~-g~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~--~v~~v~~~p~~~~l~s~~~dg~i~iW 510 (512)
....+..|+.+.+.|. ...|++.+.|..|+|||.++..++..++++.+ .-....|+.||++|+++++|..|+||
T Consensus 494 ~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW 573 (712)
T KOG0283|consen 494 HNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIW 573 (712)
T ss_pred ccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEE
Confidence 1122347999999764 34688888999999999999999999997643 34567899999999999999999999
Q ss_pred c
Q 010362 511 K 511 (512)
Q Consensus 511 ~ 511 (512)
+
T Consensus 574 ~ 574 (712)
T KOG0283|consen 574 K 574 (712)
T ss_pred e
Confidence 7
No 77
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=9.6e-30 Score=214.08 Aligned_cols=270 Identities=21% Similarity=0.274 Sum_probs=215.8
Q ss_pred EEEEEeCCCeEEEEEcCCCe----eeccccccccceeeccCcceeEEEEcCCCCeEEEEeCCCeEEEEEccCCeeeEEec
Q 010362 227 FLVSCSFDGFIEVWDYLSGK----LKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLE 302 (512)
Q Consensus 227 ~l~sg~~dg~i~iwd~~~~~----~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~ 302 (512)
.|++|+....|.=+++.... ....+...+...+..|.++|++++.+ +.++|+||.|-+|+|||+.....+..+.
T Consensus 3 ~iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg~ll 80 (362)
T KOG0294|consen 3 EIIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLGILL 80 (362)
T ss_pred eEEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhccee
Confidence 36777777777777664333 22233334455677899999999996 8899999999999999999998888886
Q ss_pred cccccCeEEEEEecCCC--EEEEEeCCCcEEEEeCCCCceeEEeeCCccceeEEEEcCCCCEEEEEeCCCcEEEEeCCCC
Q 010362 303 RAHSEGVTSLVFSRDGS--QILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKST 380 (512)
Q Consensus 303 ~~~~~~i~~~~~~~~~~--~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 380 (512)
.|.+.|+++.|.++-. .|++|+.||.|.+|+.....++.++++|.+.|+.++.+|.++.-++.+.|+.++.||+-.|
T Consensus 81 -~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~G 159 (362)
T KOG0294|consen 81 -SHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRG 159 (362)
T ss_pred -ccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcC
Confidence 8999999999998764 8999999999999999999999999999999999999999999999999999999999998
Q ss_pred ceeeecCCCCCCCCCCceeEEEEEcCCCCCeEEEEcCCCcEEEEecCCeEEEEeeCCcccCCcEEEEEECCCCCEEEEEe
Q 010362 381 DCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQVVKSFSSGKREGGDFVAACVSPKGEWIYCVG 460 (512)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~ 460 (512)
+........ ...+.+.|+|.+ ..+++... ..|-+|.+....+......+ ..+.++.|. ++..+++|+
T Consensus 160 r~a~v~~L~-------~~at~v~w~~~G-d~F~v~~~-~~i~i~q~d~A~v~~~i~~~---~r~l~~~~l-~~~~L~vG~ 226 (362)
T KOG0294|consen 160 RVAFVLNLK-------NKATLVSWSPQG-DHFVVSGR-NKIDIYQLDNASVFREIENP---KRILCATFL-DGSELLVGG 226 (362)
T ss_pred ccceeeccC-------CcceeeEEcCCC-CEEEEEec-cEEEEEecccHhHhhhhhcc---ccceeeeec-CCceEEEec
Confidence 866555432 233448999988 54444443 35677777644333322221 224444443 677899999
Q ss_pred CCCeEEEEEcCCCeeEEeccccCCCeEEEEE--cCCCCeEEEEECCCeEEEecC
Q 010362 461 EDRNLYCFSHQSGKLEHLMKVHEKDVIGVTH--HPHRNLLATYGEDCTMKLWKP 512 (512)
Q Consensus 461 ~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~--~p~~~~l~s~~~dg~i~iW~~ 512 (512)
+|+.|.+||..+..+...+.+|...|.++.+ .|++.+|+|+|.||.|+|||.
T Consensus 227 d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~ 280 (362)
T KOG0294|consen 227 DNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDI 280 (362)
T ss_pred CCceEEEeccCCCccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEc
Confidence 9999999999999999999999999999984 457789999999999999983
No 78
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=6.5e-30 Score=214.98 Aligned_cols=292 Identities=19% Similarity=0.384 Sum_probs=227.8
Q ss_pred cCccccceEEEecCcCceEEEEECCCCCEEEEEeCCCeEEEEEcCCCeeeccccccccceeeccCcceeEEEEcCCCCeE
Q 010362 199 MYPTTLSHTIKFGTKSHAECARFSPDGQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEML 278 (512)
Q Consensus 199 ~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l 278 (512)
.+|....+++..+| ..|+.|++.|.+||+|+.||.|.|||+.+...-+ .+.+|..+|++++||+||+.|
T Consensus 12 ~~PEel~~tld~~~---a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar--------~lsaH~~pi~sl~WS~dgr~L 80 (405)
T KOG1273|consen 12 EYPEELTHTLDNPL---AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIAR--------MLSAHVRPITSLCWSRDGRKL 80 (405)
T ss_pred cChHhhceeccCCc---cceEEeccCcceeeeeccCCcEEEEEccccchhh--------hhhccccceeEEEecCCCCEe
Confidence 56888888887555 7899999999999999999999999998866433 556799999999999999999
Q ss_pred EEEeCCCeEEEEEccCCeeeEEeccccccCeEEEEEecC-CCEEEEEeCCCcEEEEeCCCCceeEEeeC-----Ccccee
Q 010362 279 ASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRD-GSQILSTSFDSTARIHGLKSGKLLKEFRG-----HSSYVN 352 (512)
Q Consensus 279 ~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~v~i~d~~~~~~~~~~~~-----~~~~v~ 352 (512)
+++|.|..|.+||+..|.+++++. ..++|..+.|+|- .+..++.-.+..-.+.++..+.. ..+.. .+....
T Consensus 81 ltsS~D~si~lwDl~~gs~l~rir--f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h-~~Lp~d~d~dln~sas 157 (405)
T KOG1273|consen 81 LTSSRDWSIKLWDLLKGSPLKRIR--FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKH-SVLPKDDDGDLNSSAS 157 (405)
T ss_pred eeecCCceeEEEeccCCCceeEEE--ccCccceeeeccccCCeEEEEEecCCcEEEEecCCce-eeccCCCccccccccc
Confidence 999999999999999999999886 7899999999994 34444444444455555543221 11111 111223
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeecCCCCCCCCCCceeEEEEEcCCCCCeEEEEcCCCcEEEEecCCeE--
Q 010362 353 DAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQV-- 430 (512)
Q Consensus 353 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~-- 430 (512)
+..|.+.|+++++|...|.+.++|..+.+++..++... ...|.++.++..+ ..++..+.|..|+.|+++.-.
T Consensus 158 ~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits-----~~~IK~I~~s~~g-~~liiNtsDRvIR~ye~~di~~~ 231 (405)
T KOG1273|consen 158 HGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRITS-----VQAIKQIIVSRKG-RFLIINTSDRVIRTYEISDIDDE 231 (405)
T ss_pred cccccCCCCEEEEecCcceEEEEecchheeeeeeeech-----heeeeEEEEeccC-cEEEEecCCceEEEEehhhhccc
Confidence 34688999999999999999999999998888776432 3567778887766 899999999999999986211
Q ss_pred -----EEEe--eCCcccCCcEEEEEECCCCCEEEEEe-CCCeEEEEEcCCCeeEEeccccC-CCeEEEEEcCCCCeEEEE
Q 010362 431 -----VKSF--SSGKREGGDFVAACVSPKGEWIYCVG-EDRNLYCFSHQSGKLEHLMKVHE-KDVIGVTHHPHRNLLATY 501 (512)
Q Consensus 431 -----~~~~--~~~~~~~~~~~~~~~s~~g~~l~~g~-~dg~i~iwd~~~~~~~~~~~~h~-~~v~~v~~~p~~~~l~s~ 501 (512)
+... ...........++|||.+|.|+++|+ .-..++||....|.+++.+.|.. .....|.|+|-...+++-
T Consensus 232 ~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~si 311 (405)
T KOG1273|consen 232 GRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIASI 311 (405)
T ss_pred CccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeecCCchhheeecccccceeeeeec
Confidence 1100 00011234567899999999999988 45579999999999999999887 567799999999999888
Q ss_pred ECCCeEEEec
Q 010362 502 GEDCTMKLWK 511 (512)
Q Consensus 502 ~~dg~i~iW~ 511 (512)
..|.|+||.
T Consensus 312 -~sg~v~iw~ 320 (405)
T KOG1273|consen 312 -ASGVVYIWA 320 (405)
T ss_pred -cCCceEEEE
Confidence 789999995
No 79
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.97 E-value=6.8e-31 Score=213.84 Aligned_cols=264 Identities=24% Similarity=0.382 Sum_probs=224.8
Q ss_pred ccccccccccCccccceEEEecCcCceEEEEECCCCCEEEEEeCCCeEEEEEcCCCeeeccccccccceeeccCcceeEE
Q 010362 190 AAMKQDVEDMYPTTLSHTIKFGTKSHAECARFSPDGQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCI 269 (512)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l 269 (512)
.+.+.-..+-.+....-++. ||++.|+....+.+....|+++.|-+-+|||.-+|..+..+. |..-|..+
T Consensus 37 kd~~pmlr~g~tgdwigtfe-ghkgavw~~~l~~na~~aasaaadftakvw~a~tgdelhsf~---------hkhivk~~ 106 (334)
T KOG0278|consen 37 KDGKPMLRNGDTGDWIGTFE-GHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDELHSFE---------HKHIVKAV 106 (334)
T ss_pred cCCCchhccCCCCCcEEeee-ccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhhhhhhh---------hhheeeeE
Confidence 33444444455566666776 999999999999999999999999999999999998877665 88899999
Q ss_pred EEcCCCCeEEEEeCCCeEEEEEccCCee-eEEeccccccCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeeCCc
Q 010362 270 EFSRDSEMLASGSQDGKIKVWRIRSGQC-LRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRGHS 348 (512)
Q Consensus 270 ~~s~~~~~l~s~~~dg~i~vwd~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~ 348 (512)
+|+.|.++|++|+.+..++|||++..+. ...+ .+|++.|..+.|....+.|++++.|++|++||.+++..+.++. .+
T Consensus 107 af~~ds~~lltgg~ekllrvfdln~p~App~E~-~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~-~~ 184 (334)
T KOG0278|consen 107 AFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEI-SGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLE-FN 184 (334)
T ss_pred EecccchhhhccchHHHhhhhhccCCCCCchhh-cCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEe-cC
Confidence 9999999999999999999999987654 3444 4899999999999988999999999999999999999999887 56
Q ss_pred cceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeecCCCCCCCCCCceeEEEEEcCCCCCeEEEEcCCCcEEEEecC-
Q 010362 349 SYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQ- 427 (512)
Q Consensus 349 ~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~~~~~- 427 (512)
.+|+++..+++|.++.++ ..+.|.+||..+...++.+..+ ..|.+..++|.. ..+++|+.|..++.||..
T Consensus 185 s~VtSlEvs~dG~ilTia-~gssV~Fwdaksf~~lKs~k~P-------~nV~SASL~P~k-~~fVaGged~~~~kfDy~T 255 (334)
T KOG0278|consen 185 SPVTSLEVSQDGRILTIA-YGSSVKFWDAKSFGLLKSYKMP-------CNVESASLHPKK-EFFVAGGEDFKVYKFDYNT 255 (334)
T ss_pred CCCcceeeccCCCEEEEe-cCceeEEeccccccceeeccCc-------cccccccccCCC-ceEEecCcceEEEEEeccC
Confidence 679999999999866555 4567999999998888887755 368888999988 899999999999999998
Q ss_pred CeEEEEeeCCcccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCeeE
Q 010362 428 GQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLE 476 (512)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~ 476 (512)
+..+..+. ..+.++|.++.|+|+|...++|++||+|++|....++..
T Consensus 256 geEi~~~n--kgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~~~ 302 (334)
T KOG0278|consen 256 GEEIGSYN--KGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGKTY 302 (334)
T ss_pred Cceeeecc--cCCCCceEEEEECCCCceeeccCCCceEEEEEecCCCch
Confidence 55555542 335688999999999999999999999999998776644
No 80
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.97 E-value=6e-30 Score=237.11 Aligned_cols=324 Identities=20% Similarity=0.298 Sum_probs=256.2
Q ss_pred eccCcccccccccccCccccceEEEecCcCceEEEEECCC-----------CCEEEEEeCCCeEEEEEcCCCeeecc---
Q 010362 185 LFRGTAAMKQDVEDMYPTTLSHTIKFGTKSHAECARFSPD-----------GQFLVSCSFDGFIEVWDYLSGKLKKD--- 250 (512)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~-----------~~~l~sg~~dg~i~iwd~~~~~~~~~--- 250 (512)
++.++..+.+++.|.......+.+. -|...||.+.--|. ...+.|++.||+|++||++.+.....
T Consensus 342 VYndhSlYvWDvrD~~kvgk~~s~l-yHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrR 420 (1080)
T KOG1408|consen 342 VYNDHSLYVWDVRDVNKVGKCSSML-YHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRR 420 (1080)
T ss_pred EEcCceEEEEeccccccccceeeee-eccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeec
Confidence 3445555556666665555555554 78999998876551 23588999999999999876321111
Q ss_pred -c--------cccc-----------------cceeeccCcceeEEEEcCCCCeEEEEeCCCeEEEEEccCCeeeEEeccc
Q 010362 251 -L--------QYQA-----------------DETFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERA 304 (512)
Q Consensus 251 -~--------~~~~-----------------~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~ 304 (512)
+ .+.. .....+....+.+++.+|+|++||+|..-|+++||++.+-+....+. .
T Consensus 421 Nils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~e-A 499 (1080)
T KOG1408|consen 421 NILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFME-A 499 (1080)
T ss_pred ccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehhhhhhhhee-c
Confidence 0 0000 00112244579999999999999999999999999999988888887 8
Q ss_pred cccCeEEEEEec---CCCEEEEEeCCCcEEEEeCCCC-ceeEEeeCCccceeEEEEcCCC--CEEEEEeCCCcEEEEeCC
Q 010362 305 HSEGVTSLVFSR---DGSQILSTSFDSTARIHGLKSG-KLLKEFRGHSSYVNDAIFTNDG--SRVVTASSDCTVKVWDLK 378 (512)
Q Consensus 305 ~~~~i~~~~~~~---~~~~l~~~~~dg~v~i~d~~~~-~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~~dg~i~iwd~~ 378 (512)
|...|.|+.|+. ..++|++++.|..|.+||+... .++.++.+|.+.|+++.|.-.| ..+++++.|..|.+--.+
T Consensus 500 HesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~q 579 (1080)
T KOG1408|consen 500 HESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQ 579 (1080)
T ss_pred ccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhc
Confidence 999999999985 3578999999999999998644 5678899999999999998776 678999999877543332
Q ss_pred CCceeeecCCCCCCCCCCceeEEEEEcCCCCCeEEEEcCCCcEEEEecC-CeEEEEeeCCcccCCcEEEEEECCCCCEEE
Q 010362 379 STDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQ-GQVVKSFSSGKREGGDFVAACVSPKGEWIY 457 (512)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~ 457 (512)
.......+.... .......++.+.+.|.. .++++++.|..|++|++. ++..+.+.....+.+....+...|.|.||+
T Consensus 580 k~~~g~~f~r~t-~t~~ktTlYDm~Vdp~~-k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~a 657 (1080)
T KOG1408|consen 580 KASSGRLFPRHT-QTLSKTTLYDMAVDPTS-KLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLA 657 (1080)
T ss_pred cccCceeccccc-cccccceEEEeeeCCCc-ceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEE
Confidence 211112222111 12235678999999987 899999999999999998 778888888888888999999999999999
Q ss_pred EEeCCCeEEEEEcCCCeeEEeccccCCCeEEEEEcCCCCeEEEEECCCeEEEecC
Q 010362 458 CVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPHRNLLATYGEDCTMKLWKP 512 (512)
Q Consensus 458 ~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~~~dg~i~iW~~ 512 (512)
+.+.|.++.++|..+|+++....+|...|+.+.|.+|-+.|++.+.||.|.||+.
T Consensus 658 tScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~l 712 (1080)
T KOG1408|consen 658 TSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLISVSGDGCIFVWKL 712 (1080)
T ss_pred EeecCCceEEEEeccchhhhhhcCcchheeeeeecccchhheeecCCceEEEEEC
Confidence 9999999999999999999999999999999999999999999999999999973
No 81
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=1.3e-29 Score=212.09 Aligned_cols=240 Identities=22% Similarity=0.346 Sum_probs=198.2
Q ss_pred cCcceeEEEEcC-CCCeEEEEeCCCeEEEEEccC-CeeeEEeccccccCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCc
Q 010362 262 HDETVLCIEFSR-DSEMLASGSQDGKIKVWRIRS-GQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGK 339 (512)
Q Consensus 262 h~~~v~~l~~s~-~~~~l~s~~~dg~i~vwd~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~ 339 (512)
....|.+++||| ...+++.+|.||+||+|++.. |..+.+....|.++|.+++|+.||..+++|+.|+.+++||+.++
T Consensus 26 P~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~- 104 (347)
T KOG0647|consen 26 PEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASG- 104 (347)
T ss_pred cccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCC-
Confidence 567899999999 556677899999999999986 56665555689999999999999999999999999999999998
Q ss_pred eeEEeeCCccceeEEEEcCCCC--EEEEEeCCCcEEEEeCCCCceeeecCCCCCCCCCCceeEEEEEcCCCCCeEEEEcC
Q 010362 340 LLKEFRGHSSYVNDAIFTNDGS--RVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNK 417 (512)
Q Consensus 340 ~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~ 417 (512)
....+..|..+|.++.|-+... .|+||+.|++|++||++...++.++..+. .++++..- ..+++++..
T Consensus 105 Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPe-------RvYa~Dv~---~pm~vVata 174 (347)
T KOG0647|consen 105 QVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPE-------RVYAADVL---YPMAVVATA 174 (347)
T ss_pred CeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccc-------eeeehhcc---CceeEEEec
Confidence 4566778999999999987665 89999999999999999998888877554 55555443 268899999
Q ss_pred CCcEEEEecCCeEEEEeeCCcccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCC--eeEEeccccCC---------Ce
Q 010362 418 TSSIYIMTLQGQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSG--KLEHLMKVHEK---------DV 486 (512)
Q Consensus 418 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~dg~i~iwd~~~~--~~~~~~~~h~~---------~v 486 (512)
+..|.+|++++.....-.....-...+.+++..+|....+.|+-+|.+.|..+..+ +.-..++.|.. .|
T Consensus 175 ~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaV 254 (347)
T KOG0647|consen 175 ERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAV 254 (347)
T ss_pred CCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEe
Confidence 99999999985543332222223456788888888888899999999999999887 44455666753 48
Q ss_pred EEEEEcCCCCeEEEEECCCeEEEecC
Q 010362 487 IGVTHHPHRNLLATYGEDCTMKLWKP 512 (512)
Q Consensus 487 ~~v~~~p~~~~l~s~~~dg~i~iW~~ 512 (512)
++|+|+|....|+|+|.||+..+||.
T Consensus 255 Nsi~FhP~hgtlvTaGsDGtf~FWDk 280 (347)
T KOG0647|consen 255 NSIAFHPVHGTLVTAGSDGTFSFWDK 280 (347)
T ss_pred cceEeecccceEEEecCCceEEEecc
Confidence 89999999999999999999999983
No 82
>PTZ00421 coronin; Provisional
Probab=99.97 E-value=2.3e-28 Score=235.04 Aligned_cols=235 Identities=20% Similarity=0.309 Sum_probs=181.6
Q ss_pred ecCcCceEEEEECC-CCCEEEEEeCCCeEEEEEcCCCeeeccccccccceeeccCcceeEEEEcCCC-CeEEEEeCCCeE
Q 010362 210 FGTKSHAECARFSP-DGQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDS-EMLASGSQDGKI 287 (512)
Q Consensus 210 ~~h~~~v~~~~~s~-~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~-~~l~s~~~dg~i 287 (512)
.+|.+.|++++|+| ++++||+|+.||+|++||+.++...... ..+...+.+|...|.+++|+|++ ++|++|+.|++|
T Consensus 72 ~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~-~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtV 150 (493)
T PTZ00421 72 LGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNI-SDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVV 150 (493)
T ss_pred eCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCcccccc-CcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEE
Confidence 49999999999999 8899999999999999999765432211 12344677899999999999975 699999999999
Q ss_pred EEEEccCCeeeEEeccccccCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeeCCccc-eeEEEEcCCCCEEEEE
Q 010362 288 KVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSY-VNDAIFTNDGSRVVTA 366 (512)
Q Consensus 288 ~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~~~ 366 (512)
++||+.+++.+..+. .|...|.+++|+|++.+|++++.|+.|++||+++++.+..+.+|.+. +..+.|.+++..++++
T Consensus 151 rIWDl~tg~~~~~l~-~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~ 229 (493)
T PTZ00421 151 NVWDVERGKAVEVIK-CHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITL 229 (493)
T ss_pred EEEECCCCeEEEEEc-CCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEE
Confidence 999999999888886 78999999999999999999999999999999999999999988764 4567899988888776
Q ss_pred e----CCCcEEEEeCCCCceeeecCCCCCCCCCCceeEEEEEcCCCCCeEEEEc-CCCcEEEEecCCeEEEEeeCCcccC
Q 010362 367 S----SDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCN-KTSSIYIMTLQGQVVKSFSSGKREG 441 (512)
Q Consensus 367 ~----~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~ 441 (512)
+ .|+.|++||+++.......... .....+....+++++ .++++++ .|+.|++||+........... ...
T Consensus 230 G~s~s~Dr~VklWDlr~~~~p~~~~~~----d~~~~~~~~~~d~d~-~~L~lggkgDg~Iriwdl~~~~~~~~~~~-~s~ 303 (493)
T PTZ00421 230 GCSKSQQRQIMLWDTRKMASPYSTVDL----DQSSALFIPFFDEDT-NLLYIGSKGEGNIRCFELMNERLTFCSSY-SSV 303 (493)
T ss_pred ecCCCCCCeEEEEeCCCCCCceeEecc----CCCCceEEEEEcCCC-CEEEEEEeCCCeEEEEEeeCCceEEEeec-cCC
Confidence 5 4789999999875422211110 122345555677777 5666655 699999999985433222211 123
Q ss_pred CcEEEEEECCC
Q 010362 442 GDFVAACVSPK 452 (512)
Q Consensus 442 ~~~~~~~~s~~ 452 (512)
.+...+++.|.
T Consensus 304 ~~~~g~~~~pk 314 (493)
T PTZ00421 304 EPHKGLCMMPK 314 (493)
T ss_pred CCCcceEeccc
Confidence 34567777774
No 83
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.97 E-value=6.1e-29 Score=207.28 Aligned_cols=298 Identities=17% Similarity=0.231 Sum_probs=233.6
Q ss_pred ecCcCceEEEEECC-CCCEEEEEeCCCeEEEEEcCCCeeecc-------ccccccceeeccCcceeEEEEcC-CCCeEEE
Q 010362 210 FGTKSHAECARFSP-DGQFLVSCSFDGFIEVWDYLSGKLKKD-------LQYQADETFMMHDETVLCIEFSR-DSEMLAS 280 (512)
Q Consensus 210 ~~h~~~v~~~~~s~-~~~~l~sg~~dg~i~iwd~~~~~~~~~-------~~~~~~~~~~~h~~~v~~l~~s~-~~~~l~s 280 (512)
..|.+.|.++...+ .|+++++|+.||.|.+||++....... ...-....-.+|...|..+.|-| |..++.+
T Consensus 40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFts 119 (397)
T KOG4283|consen 40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTS 119 (397)
T ss_pred ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeec
Confidence 37889999999998 689999999999999999976441110 00011223356889999999999 6778999
Q ss_pred EeCCCeEEEEEccCCeeeEEeccccccCeEEEEEecC---CCEEEEEeCCCcEEEEeCCCCceeEEeeCCccceeEEEEc
Q 010362 281 GSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRD---GSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFT 357 (512)
Q Consensus 281 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~ 357 (512)
++.|.+++|||..+-+....+. .++.|.+-+++|- ..++++|..|-.|++.|+.+|....++.+|.+.|.++.|+
T Consensus 120 sSFDhtlKVWDtnTlQ~a~~F~--me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Ws 197 (397)
T KOG4283|consen 120 SSFDHTLKVWDTNTLQEAVDFK--MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWS 197 (397)
T ss_pred ccccceEEEeecccceeeEEee--cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEec
Confidence 9999999999999998888875 6788999999983 4578888889999999999999999999999999999999
Q ss_pred CCCCE-EEEEeCCCcEEEEeCCCC-ceeeecCCC--------CCCCCCCceeEEEEEcCCCCCeEEEEcCCCcEEEEecC
Q 010362 358 NDGSR-VVTASSDCTVKVWDLKST-DCLQTFKPP--------PPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQ 427 (512)
Q Consensus 358 ~~~~~-l~~~~~dg~i~iwd~~~~-~~~~~~~~~--------~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~~~~~ 427 (512)
|...+ |++|+.||.|++||++.. .+...+... .....|.+.+++++|..++ ..+++++.|.++++|+..
T Consensus 198 p~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~-~~l~~~gtd~r~r~wn~~ 276 (397)
T KOG4283|consen 198 PSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDA-RYLASCGTDDRIRVWNME 276 (397)
T ss_pred cCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccc-hhhhhccCccceEEeecc
Confidence 98776 578999999999999864 233222211 1234688999999999988 889999999999999987
Q ss_pred Ce--EEEEeeCCcc---cCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCeeEEeccccCCCeEEEEEcCCCCeEEEEE
Q 010362 428 GQ--VVKSFSSGKR---EGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPHRNLLATYG 502 (512)
Q Consensus 428 ~~--~~~~~~~~~~---~~~~~~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~~ 502 (512)
.. ..+.+..... ....+. +. +.+...++.--.++.+.++++-.|..+..+..|-..|.|.++-|+-+...+|+
T Consensus 277 ~G~ntl~~~g~~~~n~~~~~~~~-~~-~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~h~k~i~c~~~~~~fq~~~tg~ 354 (397)
T KOG4283|consen 277 SGRNTLREFGPIIHNQTTSFAVH-IQ-SMDSDVFVLFPNDGSLALLNLLEGSFVRRLSTHLKRINCAAYRPDFEQCFTGD 354 (397)
T ss_pred cCcccccccccccccccccceEE-Ee-ecccceEEEEecCCeEEEEEccCceEEEeeecccceeeEEeecCchhhhhccc
Confidence 32 2222211111 011111 22 33444444445669999999999999999999999999999999988999999
Q ss_pred CCCeEEEecC
Q 010362 503 EDCTMKLWKP 512 (512)
Q Consensus 503 ~dg~i~iW~~ 512 (512)
.|+.|..|-|
T Consensus 355 ~d~ni~~w~p 364 (397)
T KOG4283|consen 355 MNGNIYMWSP 364 (397)
T ss_pred cCCccccccc
Confidence 9999999965
No 84
>PTZ00420 coronin; Provisional
Probab=99.97 E-value=2.7e-28 Score=235.38 Aligned_cols=252 Identities=17% Similarity=0.211 Sum_probs=189.5
Q ss_pred cccccccCccccceEEEecCcCceEEEEECCC-CCEEEEEeCCCeEEEEEcCCCee-eccccccccceeeccCcceeEEE
Q 010362 193 KQDVEDMYPTTLSHTIKFGTKSHAECARFSPD-GQFLVSCSFDGFIEVWDYLSGKL-KKDLQYQADETFMMHDETVLCIE 270 (512)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~-~~~l~sg~~dg~i~iwd~~~~~~-~~~~~~~~~~~~~~h~~~v~~l~ 270 (512)
...+|+.........+. +|.+.|.+++|+|+ +.+||+|+.||+|+|||+.++.. ...+ ..+...+.+|...|.+++
T Consensus 55 vI~L~~~~r~~~v~~L~-gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i-~~p~~~L~gH~~~V~sVa 132 (568)
T PTZ00420 55 AIRLENQMRKPPVIKLK-GHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEI-KDPQCILKGHKKKISIID 132 (568)
T ss_pred EEEeeecCCCceEEEEc-CCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCcccccc-ccceEEeecCCCcEEEEE
Confidence 33445444444455555 99999999999996 78999999999999999976432 1111 123345678999999999
Q ss_pred EcCCCCe-EEEEeCCCeEEEEEccCCeeeEEeccccccCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeeCCcc
Q 010362 271 FSRDSEM-LASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRGHSS 349 (512)
Q Consensus 271 ~s~~~~~-l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~ 349 (512)
|+|++.. |++++.|++|++||+.+++.+..+. +...|.+++|+|+|.+|++++.|+.|++||+++++.+.++.+|.+
T Consensus 133 f~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~--~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g 210 (568)
T PTZ00420 133 WNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN--MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDG 210 (568)
T ss_pred ECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe--cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEecccC
Confidence 9998875 5789999999999999998777664 567899999999999999999999999999999999999999987
Q ss_pred ceeEE-----EEcCCCCEEEEEeCCC----cEEEEeCCC-CceeeecCCCCCCCCCCceeEEEEEcCCCCCeEEEEcCCC
Q 010362 350 YVNDA-----IFTNDGSRVVTASSDC----TVKVWDLKS-TDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTS 419 (512)
Q Consensus 350 ~v~~~-----~~~~~~~~l~~~~~dg----~i~iwd~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~ 419 (512)
.+.+. .|++++.++++++.|+ .|++||++. ..++..+... ...+.+. ..+.++...++++|..|+
T Consensus 211 ~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld----~~~~~L~-p~~D~~tg~l~lsGkGD~ 285 (568)
T PTZ00420 211 GKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSID----NASAPLI-PHYDESTGLIYLIGKGDG 285 (568)
T ss_pred CceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEec----CCccceE-EeeeCCCCCEEEEEECCC
Confidence 65433 3458889999988774 799999995 4444433211 1122222 234455558899999999
Q ss_pred cEEEEecCCeEEEEeeCCcccCCcEEEEEECCCCC
Q 010362 420 SIYIMTLQGQVVKSFSSGKREGGDFVAACVSPKGE 454 (512)
Q Consensus 420 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~ 454 (512)
.|++|++.......+.... ...+...++|.|...
T Consensus 286 tIr~~e~~~~~~~~l~~~~-s~~p~~g~~f~Pkr~ 319 (568)
T PTZ00420 286 NCRYYQHSLGSIRKVNEYK-SCSPFRSFGFLPKQI 319 (568)
T ss_pred eEEEEEccCCcEEeecccc-cCCCccceEEccccc
Confidence 9999999865554444333 456677899988643
No 85
>PTZ00420 coronin; Provisional
Probab=99.97 E-value=4.5e-28 Score=233.81 Aligned_cols=247 Identities=17% Similarity=0.209 Sum_probs=186.4
Q ss_pred EeCCCeEEEEEcCCCeeeccccccccceeeccCcceeEEEEcCC-CCeEEEEeCCCeEEEEEccCCe--------eeEEe
Q 010362 231 CSFDGFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRD-SEMLASGSQDGKIKVWRIRSGQ--------CLRRL 301 (512)
Q Consensus 231 g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~-~~~l~s~~~dg~i~vwd~~~~~--------~~~~~ 301 (512)
|+.+|.|++|+..... +...+.+|...|.+++|+|+ +.+|++|+.||+|++||+.++. .+..+
T Consensus 50 GG~~gvI~L~~~~r~~--------~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L 121 (568)
T PTZ00420 50 GGLIGAIRLENQMRKP--------PVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCIL 121 (568)
T ss_pred CCceeEEEeeecCCCc--------eEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEe
Confidence 6678899999875543 22356779999999999996 7899999999999999998642 22344
Q ss_pred ccccccCeEEEEEecCCCEE-EEEeCCCcEEEEeCCCCceeEEeeCCccceeEEEEcCCCCEEEEEeCCCcEEEEeCCCC
Q 010362 302 ERAHSEGVTSLVFSRDGSQI-LSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKST 380 (512)
Q Consensus 302 ~~~~~~~i~~~~~~~~~~~l-~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 380 (512)
. +|...|.+++|+|++..+ ++++.|++|++||+++++....+. |...|.+++|+|+|.+|++++.|+.|++||++++
T Consensus 122 ~-gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg 199 (568)
T PTZ00420 122 K-GHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQ 199 (568)
T ss_pred e-cCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCC
Confidence 4 789999999999988764 688999999999999998877776 5678999999999999999999999999999999
Q ss_pred ceeeecCCCCCCCCCCceeEE-----EEEcCCCCCeEEEEcCC----CcEEEEecC--CeEEEEeeCCcccCCcEEEEEE
Q 010362 381 DCLQTFKPPPPLRGGDASVNS-----VHLFPKNPDHIVVCNKT----SSIYIMTLQ--GQVVKSFSSGKREGGDFVAACV 449 (512)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~i~~-----~~~~~~~~~~l~~~~~~----~~i~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 449 (512)
+.+..+. +|.+.+.+ ..+++++ .++++++.+ +.|++||++ +..+..... ....+.+.....
T Consensus 200 ~~i~tl~------gH~g~~~s~~v~~~~fs~d~-~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~l-d~~~~~L~p~~D 271 (568)
T PTZ00420 200 EIASSFH------IHDGGKNTKNIWIDGLGGDD-NYILSTGFSKNNMREMKLWDLKNTTSALVTMSI-DNASAPLIPHYD 271 (568)
T ss_pred cEEEEEe------cccCCceeEEEEeeeEcCCC-CEEEEEEcCCCCccEEEEEECCCCCCceEEEEe-cCCccceEEeee
Confidence 8877765 34433322 2344655 567766655 379999998 334433322 222233333344
Q ss_pred CCCCCEEEEEeCCCeEEEEEcCCCeeEEecc-ccCCCeEEEEEcCCC
Q 010362 450 SPKGEWIYCVGEDRNLYCFSHQSGKLEHLMK-VHEKDVIGVTHHPHR 495 (512)
Q Consensus 450 s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~~-~h~~~v~~v~~~p~~ 495 (512)
.++|.++++|+.|+.|++|++..+.+...-. .+..++.+++|.|..
T Consensus 272 ~~tg~l~lsGkGD~tIr~~e~~~~~~~~l~~~~s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 272 ESTGLIYLIGKGDGNCRYYQHSLGSIRKVNEYKSCSPFRSFGFLPKQ 318 (568)
T ss_pred CCCCCEEEEEECCCeEEEEEccCCcEEeecccccCCCccceEEcccc
Confidence 6679999999999999999998775332211 256788899999964
No 86
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.97 E-value=2.7e-29 Score=205.89 Aligned_cols=242 Identities=19% Similarity=0.275 Sum_probs=205.5
Q ss_pred ceeeccCcceeEEEEcCCCCeEEEEeCCCeEEEEEccCCeeeEEec-cccccCeEEEEEec-CCCEEEEEeCCCcEEEEe
Q 010362 257 ETFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLE-RAHSEGVTSLVFSR-DGSQILSTSFDSTARIHG 334 (512)
Q Consensus 257 ~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~-~~~~~~i~~~~~~~-~~~~l~~~~~dg~v~i~d 334 (512)
+.+.+|...|.+++|+.+|..|++|+.|+++++|+++.++...... .+|.+.|..++|+| ....+++++.|.+|++||
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd 93 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWD 93 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEE
Confidence 3456699999999999999999999999999999998775443332 37888999999988 567899999999999999
Q ss_pred CCCCceeEEeeCCccceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeecCCCCCCCCCCceeEEEEEcCCCCCeEEE
Q 010362 335 LKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVV 414 (512)
Q Consensus 335 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~ 414 (512)
++++++...+......+ -+.|+|+|++++.++.|..|.+.|.++.+.....+. ...+..+.|+.++ ++++.
T Consensus 94 ~r~~k~~~~i~~~~eni-~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~-------~~e~ne~~w~~~n-d~Ffl 164 (313)
T KOG1407|consen 94 IRSGKCTARIETKGENI-NITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQF-------KFEVNEISWNNSN-DLFFL 164 (313)
T ss_pred eccCcEEEEeeccCcce-EEEEcCCCCEEEEecCcccEEEEEecccceeehhcc-------cceeeeeeecCCC-CEEEE
Confidence 99999998887555544 479999999999999999999999999887766553 3467888888444 88888
Q ss_pred EcCCCcEEEEecCCeEEEEeeCCcccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCeeEEeccccCCCeEEEEEcCC
Q 010362 415 CNKTSSIYIMTLQGQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPH 494 (512)
Q Consensus 415 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~p~ 494 (512)
.+..|.|.|.... .++.......|.....++.|+|+|+++++|+.|..+.+||+..--+++.+..+.-+|..+.|+.+
T Consensus 165 t~GlG~v~ILsyp--sLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~d 242 (313)
T KOG1407|consen 165 TNGLGCVEILSYP--SLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHD 242 (313)
T ss_pred ecCCceEEEEecc--ccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEeccC
Confidence 8899999998887 23333333445567889999999999999999999999999998899999999999999999999
Q ss_pred CCeEEEEECCCeEEE
Q 010362 495 RNLLATYGEDCTMKL 509 (512)
Q Consensus 495 ~~~l~s~~~dg~i~i 509 (512)
|++||+||.|..|-|
T Consensus 243 g~~lASaSEDh~IDI 257 (313)
T KOG1407|consen 243 GRMLASASEDHFIDI 257 (313)
T ss_pred cceeeccCccceEEe
Confidence 999999999998855
No 87
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.97 E-value=7.2e-29 Score=229.54 Aligned_cols=279 Identities=24% Similarity=0.392 Sum_probs=235.4
Q ss_pred cceEEEecCcCceEEEEECCCCCEEEEEeCCCeEEEEEcCCCeeeccccccccceeeccCcceeE-EEEcC-CCCeEEEE
Q 010362 204 LSHTIKFGTKSHAECARFSPDGQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHDETVLC-IEFSR-DSEMLASG 281 (512)
Q Consensus 204 ~~~~~~~~h~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~-l~~s~-~~~~l~s~ 281 (512)
+.+.+. ||+..|..+++.+.. .++++|.||++++|+-..++... .+.+.+|.+-|.+ +++.+ ++-.+++|
T Consensus 6 ls~~l~-gH~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~~~~l~------~~~~~~~~g~i~~~i~y~e~~~~~l~~g 77 (745)
T KOG0301|consen 6 LSHELE-GHKSDVRAVAVTDGV-CIISGSRDGTVKVWAKKGKQYLE------THAFEGPKGFIANSICYAESDKGRLVVG 77 (745)
T ss_pred eEEEec-cCccchheeEecCCe-EEeecCCCCceeeeeccCccccc------ceecccCcceeeccceeccccCcceEee
Confidence 445554 999999988877655 78999999999999965555333 2345557777777 88876 45569999
Q ss_pred eCCCeEEEEEccCCeeeEEeccccccCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeeCCccceeEEEEcCCCC
Q 010362 282 SQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGS 361 (512)
Q Consensus 282 ~~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~ 361 (512)
+.|++|.+|...+..+...+. +|...|++++...++. +++||.|.++++|- .+++...+.+|+..|.++..-|++
T Consensus 78 ~~D~~i~v~~~~~~~P~~~Lk-gH~snVC~ls~~~~~~-~iSgSWD~TakvW~--~~~l~~~l~gH~asVWAv~~l~e~- 152 (745)
T KOG0301|consen 78 GMDTTIIVFKLSQAEPLYTLK-GHKSNVCSLSIGEDGT-LISGSWDSTAKVWR--IGELVYSLQGHTASVWAVASLPEN- 152 (745)
T ss_pred cccceEEEEecCCCCchhhhh-ccccceeeeecCCcCc-eEecccccceEEec--chhhhcccCCcchheeeeeecCCC-
Confidence 999999999999999999997 9999999999887776 99999999999996 467777899999999999999987
Q ss_pred EEEEEeCCCcEEEEeCCCCceeeecCCCCCCCCCCceeEEEEEcCCCCCeEEEEcCCCcEEEEecCCeEEEEeeCCcccC
Q 010362 362 RVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQVVKSFSSGKREG 441 (512)
Q Consensus 362 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 441 (512)
.++||+.|.+|++|.- ++..+++. +|...|.++++.|+ ..+++|+.||.|++|++.|..+.....+ .
T Consensus 153 ~~vTgsaDKtIklWk~--~~~l~tf~------gHtD~VRgL~vl~~--~~flScsNDg~Ir~w~~~ge~l~~~~gh---t 219 (745)
T KOG0301|consen 153 TYVTGSADKTIKLWKG--GTLLKTFS------GHTDCVRGLAVLDD--SHFLSCSNDGSIRLWDLDGEVLLEMHGH---T 219 (745)
T ss_pred cEEeccCcceeeeccC--Cchhhhhc------cchhheeeeEEecC--CCeEeecCCceEEEEeccCceeeeeecc---c
Confidence 8999999999999975 55566654 78899999999986 4799999999999999999888887764 4
Q ss_pred CcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCeeEEeccccCCCeEEEEEcCCCCeEEEEECCCeEEEec
Q 010362 442 GDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPHRNLLATYGEDCTMKLWK 511 (512)
Q Consensus 442 ~~~~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~~~dg~i~iW~ 511 (512)
..+.++...+++..++++++|++++||+.. ++.+.+..+.-.|+++.+-++|. +++|+.||.||||-
T Consensus 220 n~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPttsiWsa~~L~NgD-Ivvg~SDG~VrVfT 286 (745)
T KOG0301|consen 220 NFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITLPTTSIWSAKVLLNGD-IVVGGSDGRVRVFT 286 (745)
T ss_pred eEEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEecCccceEEEEEeeCCC-EEEeccCceEEEEE
Confidence 558888888899999999999999999876 78888886677899999988887 55788899999983
No 88
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=6e-29 Score=229.99 Aligned_cols=259 Identities=21% Similarity=0.287 Sum_probs=216.1
Q ss_pred ccccCccccceEEEecCcCceEEEEECCCCCEEEEEeCCCeEEEEEcCCCeeeccccccccceeeccCcceeEEEEcCCC
Q 010362 196 VEDMYPTTLSHTIKFGTKSHAECARFSPDGQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDS 275 (512)
Q Consensus 196 ~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~ 275 (512)
.|+...........++ ...|+++.|+++|++||+|..+|.|.|||..+.+....+.. .|...|-+++|+ +
T Consensus 201 lW~~~s~~v~~l~~~~-~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~-------~h~~rvg~laW~--~ 270 (484)
T KOG0305|consen 201 LWSASSGSVTELCSFG-EELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRG-------SHASRVGSLAWN--S 270 (484)
T ss_pred EEecCCCceEEeEecC-CCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccC-------CcCceeEEEecc--C
Confidence 4555555544444444 89999999999999999999999999999988776654432 189999999998 6
Q ss_pred CeEEEEeCCCeEEEEEccCCeeeEEeccccccCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeeCCccceeEEE
Q 010362 276 EMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAI 355 (512)
Q Consensus 276 ~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~ 355 (512)
..+.+|+.|+.|..+|++..+.......+|...|+.+.|++|+.++|+|+.|+.+.|||....++...+..|...|..++
T Consensus 271 ~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~a 350 (484)
T KOG0305|consen 271 SVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALA 350 (484)
T ss_pred ceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEeccceeeeEee
Confidence 68999999999999999988766663448999999999999999999999999999999988899999999999999999
Q ss_pred EcC-CCCEEEEEe--CCCcEEEEeCCCCceeeecCCCCCCCCCCceeEEEEEcCCCCCeEEE-EcCCCcEEEEecCCeEE
Q 010362 356 FTN-DGSRVVTAS--SDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVV-CNKTSSIYIMTLQGQVV 431 (512)
Q Consensus 356 ~~~-~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~-~~~~~~i~~~~~~~~~~ 431 (512)
|+| ....||+|+ .|++|++||..++..+..+. ....|.++.|++....++.+ |..+..|.+|+......
T Consensus 351 wcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vd-------tgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~ 423 (484)
T KOG0305|consen 351 WCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVD-------TGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKL 423 (484)
T ss_pred eCCCccCceEEcCCCcccEEEEEEcCCCcEecccc-------cCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccce
Confidence 999 566788865 59999999999998887765 45689999999988555554 44667899999985332
Q ss_pred EEeeCCcccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Q 010362 432 KSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSG 473 (512)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~dg~i~iwd~~~~ 473 (512)
.. ....|...|..++++|||..+++|+.|.++++|++-+.
T Consensus 424 ~~--~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 424 VA--ELLGHTSRVLYLALSPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred ee--eecCCcceeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence 22 22235667999999999999999999999999998764
No 89
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.97 E-value=2.3e-29 Score=222.20 Aligned_cols=275 Identities=21% Similarity=0.312 Sum_probs=215.8
Q ss_pred ccceEEEecCcCceEEEEECCC-CCEEEEEeCCCeEEEEEcCCCeeeccc--cccccceeeccCcceeEEEEcCC-CCeE
Q 010362 203 TLSHTIKFGTKSHAECARFSPD-GQFLVSCSFDGFIEVWDYLSGKLKKDL--QYQADETFMMHDETVLCIEFSRD-SEML 278 (512)
Q Consensus 203 ~~~~~~~~~h~~~v~~~~~s~~-~~~l~sg~~dg~i~iwd~~~~~~~~~~--~~~~~~~~~~h~~~v~~l~~s~~-~~~l 278 (512)
......+..|.+.|+.+.+-|. ...+|+++..+.|.|||..+....... ...+.-.+.+|...-.+++|++. ...|
T Consensus 114 ~v~i~~~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~L 193 (422)
T KOG0264|consen 114 KVEISQKINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTL 193 (422)
T ss_pred ceEEEEeccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeE
Confidence 3444556789999999999995 467778889999999998765433322 45667789999998899999994 4579
Q ss_pred EEEeCCCeEEEEEccCCee------eEEeccccccCeEEEEEec-CCCEEEEEeCCCcEEEEeCC--CCceeEEeeCCcc
Q 010362 279 ASGSQDGKIKVWRIRSGQC------LRRLERAHSEGVTSLVFSR-DGSQILSTSFDSTARIHGLK--SGKLLKEFRGHSS 349 (512)
Q Consensus 279 ~s~~~dg~i~vwd~~~~~~------~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~v~i~d~~--~~~~~~~~~~~~~ 349 (512)
++++.|++|++||+..... ......+|...|..++|++ +...|++++.|+.+.|||++ +.++.....+|.+
T Consensus 194 ls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~ 273 (422)
T KOG0264|consen 194 LSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSA 273 (422)
T ss_pred eeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCC
Confidence 9999999999999975432 2233348999999999999 56778899999999999999 5667778889999
Q ss_pred ceeEEEEcC-CCCEEEEEeCCCcEEEEeCCCCceeeecCCCCCCCCCCceeEEEEEcCCCCCeEEEEcCCCcEEEEecCC
Q 010362 350 YVNDAIFTN-DGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQG 428 (512)
Q Consensus 350 ~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~~~~~~ 428 (512)
.|+|++|+| ++..||||+.|++|.+||+|+.+. ....+.+|...|..+.|+|.....+++++.|+++.+||+..
T Consensus 274 ~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~-----~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ 348 (422)
T KOG0264|consen 274 EVNCVAFNPFNEFILATGSADKTVALWDLRNLNK-----PLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSR 348 (422)
T ss_pred ceeEEEeCCCCCceEEeccCCCcEEEeechhccc-----CceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccc
Confidence 999999999 556788999999999999998653 33445688999999999999999999999999999999872
Q ss_pred eEEEEeeCCcccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCeeEEeccccCCCeEEEEEcCCCC-eEEEEECCCeE
Q 010362 429 QVVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPHRN-LLATYGEDCTM 507 (512)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~p~~~-~l~s~~~dg~i 507 (512)
-..... ++ -..|| ..+++..-.||...|+.+.|+|+.. .|+|++.|+.+
T Consensus 349 ig~eq~----------------~e------da~dg--------ppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~L 398 (422)
T KOG0264|consen 349 IGEEQS----------------PE------DAEDG--------PPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNIL 398 (422)
T ss_pred cccccC----------------hh------hhccC--------CcceeEEecCcccccccccCCCCCCeEEEEecCCceE
Confidence 111000 00 00111 1244556668999999999999765 67899999999
Q ss_pred EEecC
Q 010362 508 KLWKP 512 (512)
Q Consensus 508 ~iW~~ 512 (512)
.||++
T Consensus 399 qIW~~ 403 (422)
T KOG0264|consen 399 QIWQM 403 (422)
T ss_pred EEeec
Confidence 99985
No 90
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.97 E-value=9.8e-29 Score=237.66 Aligned_cols=269 Identities=27% Similarity=0.461 Sum_probs=225.2
Q ss_pred cCcccccccccccCccccceEEEecCcCceEEEEECCCCCEEEEEeCCCeEEEEEcCCCeeeccccccccceeeccCcce
Q 010362 187 RGTAAMKQDVEDMYPTTLSHTIKFGTKSHAECARFSPDGQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHDETV 266 (512)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~v 266 (512)
.+..+.....|+..+.....+-..||.+.|++++|...+.++++|+.|.++++||+.+|.+... +.+|.+.|
T Consensus 223 ~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~--------l~gh~stv 294 (537)
T KOG0274|consen 223 SGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHS--------LQGHTSSV 294 (537)
T ss_pred ecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEE--------ecCCCceE
Confidence 3444444467787777777773349999999999998889999999999999999999988764 45699999
Q ss_pred eEEEEcCCCCeEEEEeCCCeEEEEEccCCeeeEEeccccccCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeeC
Q 010362 267 LCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRG 346 (512)
Q Consensus 267 ~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~ 346 (512)
.++...+ ..+++|+.|.+|++|++.++.++..+. +|..+|.++..+ +.++++|+.|++|++||+.+++++.++.+
T Consensus 295 ~~~~~~~--~~~~sgs~D~tVkVW~v~n~~~l~l~~-~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~sl~g 369 (537)
T KOG0274|consen 295 RCLTIDP--FLLVSGSRDNTVKVWDVTNGACLNLLR-GHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLKSLSG 369 (537)
T ss_pred EEEEccC--ceEeeccCCceEEEEeccCcceEEEec-cccccEEEEEec--CCEEEEEecCceEEEEEhhhceeeeeecC
Confidence 9998864 478889999999999999999999987 699999999998 78999999999999999999999999999
Q ss_pred CccceeEEEEcCCCCEEEEEeCCCcEEEEeCCCC-ceeeecCCCCCCCCCCceeEEEEEcCCCCCeEEEEcCCCcEEEEe
Q 010362 347 HSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKST-DCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMT 425 (512)
Q Consensus 347 ~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~~~ 425 (512)
|...|.++.+.+. +.+++|+.|++|++||+++. +++.++. +|..-+..+.+.. ..+++++.|+.|++||
T Consensus 370 H~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~------~h~~~v~~l~~~~---~~Lvs~~aD~~Ik~WD 439 (537)
T KOG0274|consen 370 HTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQ------GHTSLVSSLLLRD---NFLVSSSADGTIKLWD 439 (537)
T ss_pred CcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhc------CCccccccccccc---ceeEeccccccEEEee
Confidence 9999999988765 78999999999999999999 7777776 4445555554432 7899999999999999
Q ss_pred cC-CeEEEEeeCCcccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCeeEEecccc
Q 010362 426 LQ-GQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVH 482 (512)
Q Consensus 426 ~~-~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~h 482 (512)
.. ++....+... +...+..+++. ...+++++.||.+.+||++++++...+-.+
T Consensus 440 ~~~~~~~~~~~~~--~~~~v~~l~~~--~~~il~s~~~~~~~l~dl~~~~~~~~l~~~ 493 (537)
T KOG0274|consen 440 AEEGECLRTLEGR--HVGGVSALALG--KEEILCSSDDGSVKLWDLRSGTLIRTLLST 493 (537)
T ss_pred cccCceeeeeccC--CcccEEEeecC--cceEEEEecCCeeEEEecccCchhhhhhhc
Confidence 98 4555555443 34556776665 578899999999999999999988876433
No 91
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=2.4e-29 Score=211.75 Aligned_cols=282 Identities=22% Similarity=0.312 Sum_probs=239.3
Q ss_pred ecCcCceEEEEECCCCCEEEEEeCCCeEEEEEcCCCeeeccccccccceeeccCcceeEEEEcCCCCeEEEEeCCCeEEE
Q 010362 210 FGTKSHAECARFSPDGQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQDGKIKV 289 (512)
Q Consensus 210 ~~h~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~v 289 (512)
.||++.|+.++-......+.+++.|.+.+||.++++.+.. .+.||.+.|++++|++.+.++++++.|++..|
T Consensus 145 ~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~--------~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHI 216 (481)
T KOG0300|consen 145 EGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLA--------TYTGHTGSVNSIKFHNSGLLLLTASGDETAHI 216 (481)
T ss_pred cccccceeeehhhcCCcceeecccccceeEEeecccccee--------eecccccceeeEEeccccceEEEccCCcchHH
Confidence 3999999999998888899999999999999999998776 45679999999999999999999999999999
Q ss_pred EEc------cC------------------------------C----eeeEEeccccccCeEEEEEecCCCEEEEEeCCCc
Q 010362 290 WRI------RS------------------------------G----QCLRRLERAHSEGVTSLVFSRDGSQILSTSFDST 329 (512)
Q Consensus 290 wd~------~~------------------------------~----~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~ 329 (512)
|.. .. + .++..+. +|.+.|.+..|...|+.+++++.|.+
T Consensus 217 W~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~lt-gH~~vV~a~dWL~gg~Q~vTaSWDRT 295 (481)
T KOG0300|consen 217 WKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLT-GHRAVVSACDWLAGGQQMVTASWDRT 295 (481)
T ss_pred HHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeee-ccccceEehhhhcCcceeeeeecccc
Confidence 962 11 0 1234444 78899999999999999999999999
Q ss_pred EEEEeCCCCceeEEeeCCccceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeecCCCCCCCCCCceeEEEEEcCCCC
Q 010362 330 ARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNP 409 (512)
Q Consensus 330 v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 409 (512)
-.+||+++++.+..+.+|....+.++-+|..+++++++.|.+.++||++.. +.....+.+|...|+++.|..+
T Consensus 296 AnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFRea-----I~sV~VFQGHtdtVTS~vF~~d-- 368 (481)
T KOG0300|consen 296 ANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREA-----IQSVAVFQGHTDTVTSVVFNTD-- 368 (481)
T ss_pred ceeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhh-----cceeeeecccccceeEEEEecC--
Confidence 999999999999999999999999999999999999999999999999842 2333445689999999999876
Q ss_pred CeEEEEcCCCcEEEEecCCe--EEEEeeCCcccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCeeE----EeccccC
Q 010362 410 DHIVVCNKTSSIYIMTLQGQ--VVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLE----HLMKVHE 483 (512)
Q Consensus 410 ~~l~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~----~~~~~h~ 483 (512)
+.+++++.|.++++||+++. ++..+.. ..++..++++..+..|+.--.+..|++||++...+- ..-++|.
T Consensus 369 d~vVSgSDDrTvKvWdLrNMRsplATIRt----dS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHr 444 (481)
T KOG0300|consen 369 DRVVSGSDDRTVKVWDLRNMRSPLATIRT----DSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHR 444 (481)
T ss_pred CceeecCCCceEEEeeeccccCcceeeec----CCccceeEeecCCceEEeccCCceEEEEecCCCccccCCcccccccc
Confidence 68999999999999999843 4444433 456888999999999999999999999998754432 2345899
Q ss_pred CCeEEEEEcCCC--CeEEEEECCCeEEEec
Q 010362 484 KDVIGVTHHPHR--NLLATYGEDCTMKLWK 511 (512)
Q Consensus 484 ~~v~~v~~~p~~--~~l~s~~~dg~i~iW~ 511 (512)
.-|.|++|..+. .-|++||.|..+.=|+
T Consensus 445 RMV~c~AW~eehp~cnLftcGFDR~v~gW~ 474 (481)
T KOG0300|consen 445 RMVTCCAWLEEHPACNLFTCGFDRMVAGWK 474 (481)
T ss_pred eeeeeeeccccCcccccccccccceeeeeE
Confidence 999999998654 3578999999999886
No 92
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=3.8e-28 Score=231.81 Aligned_cols=287 Identities=19% Similarity=0.278 Sum_probs=233.2
Q ss_pred EEecCcCceEEEEECCCCCEEEEEeCCCeEEEEEcCCC-eeeccccccccceeeccCcceeEEEEcCCCCeEEEEeCCCe
Q 010362 208 IKFGTKSHAECARFSPDGQFLVSCSFDGFIEVWDYLSG-KLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQDGK 286 (512)
Q Consensus 208 ~~~~h~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~ 286 (512)
+++.|+..-+.++|.|+|.+|.+++.||.|++|+.... +....+. .+...|.+++.. +.+|++|+.+++
T Consensus 8 lRyaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~--------~~g~~v~~ia~~--s~~f~~~s~~~t 77 (933)
T KOG1274|consen 8 LRYAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETID--------ISGELVSSIACY--SNHFLTGSEQNT 77 (933)
T ss_pred chhhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhh--------ccCceeEEEeec--ccceEEeeccce
Confidence 44689999999999999999999999999999997665 2222221 167778888765 458999999999
Q ss_pred EEEEEccCCeeeEEeccccccCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeeCCccceeEEEEcCCCCEEEEE
Q 010362 287 IKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTA 366 (512)
Q Consensus 287 i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 366 (512)
|.+|.+.+++.-..+. ..+-++.+++|+-+|++++.|+.|-.|++.++.+......+++|.++|.++.|+|++++|++.
T Consensus 78 v~~y~fps~~~~~iL~-Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvs 156 (933)
T KOG1274|consen 78 VLRYKFPSGEEDTILA-RFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVS 156 (933)
T ss_pred EEEeeCCCCCccceee-eeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEE
Confidence 9999999887654454 567899999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCcEEEEeCCCCceeeecCCCCCCCCC--CceeEEEEEcCCCCCeEEEEcCCCcEEEEecCCeEEEEeeCCcccCCcE
Q 010362 367 SSDCTVKVWDLKSTDCLQTFKPPPPLRGG--DASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQVVKSFSSGKREGGDF 444 (512)
Q Consensus 367 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 444 (512)
+.||.|++||+.++.+..++......... ...+..++|+|++ ..+++...++.|.+|+..+...............+
T Consensus 157 s~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~-g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~ 235 (933)
T KOG1274|consen 157 SCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKG-GTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKF 235 (933)
T ss_pred ecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCC-CeEEeeccCCeEEEEccCCceeheeecccccccce
Confidence 99999999999999887777654433222 4567789999998 67777888999999999865544443333344458
Q ss_pred EEEEECCCCCEEEEEeCCCeEEEEEcCCCeeEEeccccCCCeEEEEEcCCCCeEEEEECCCeEEEe
Q 010362 445 VAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPHRNLLATYGEDCTMKLW 510 (512)
Q Consensus 445 ~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~~~dg~i~iW 510 (512)
..+.|+|+|.|||+++.||.|.|||..+-.. ......|.+++|.|+.+.+-.-...|+.-+|
T Consensus 236 ~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~----~~~~~~Vc~~aw~p~~n~it~~~~~g~~~~~ 297 (933)
T KOG1274|consen 236 SDLQWSPNGKYIAASTLDGQILVWNVDTHER----HEFKRAVCCEAWKPNANAITLITALGTLGVS 297 (933)
T ss_pred EEEEEcCCCcEEeeeccCCcEEEEecccchh----ccccceeEEEecCCCCCeeEEEeeccccccC
Confidence 9999999999999999999999999987221 2234679999999988766555555554443
No 93
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.97 E-value=1.1e-28 Score=202.91 Aligned_cols=264 Identities=22% Similarity=0.289 Sum_probs=213.3
Q ss_pred ccccccccccCccccceEEEecCcCceEEEEECCCCCEEEEEeCCCeEEEEEcCCCeeeccccccccceeeccCcceeEE
Q 010362 190 AAMKQDVEDMYPTTLSHTIKFGTKSHAECARFSPDGQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCI 269 (512)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l 269 (512)
.+....+|-....+..-+.. ||++.|+|+..+.+.+.+++|+.|.++++||+.+|+.+..++ ...+|..+
T Consensus 30 KD~~~~vw~s~nGerlGty~-GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k---------~~~~Vk~~ 99 (327)
T KOG0643|consen 30 KDSTPTVWYSLNGERLGTYD-GHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWK---------TNSPVKRV 99 (327)
T ss_pred CCCCceEEEecCCceeeeec-CCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEee---------cCCeeEEE
Confidence 34455667666777777776 999999999999999999999999999999999999988766 56789999
Q ss_pred EEcCCCCeEEEEeC-----CCeEEEEEcc-------CCeeeEEeccccccCeEEEEEecCCCEEEEEeCCCcEEEEeCCC
Q 010362 270 EFSRDSEMLASGSQ-----DGKIKVWRIR-------SGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKS 337 (512)
Q Consensus 270 ~~s~~~~~l~s~~~-----dg~i~vwd~~-------~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~i~d~~~ 337 (512)
.|+++|++++.+.. .+.|.++|++ ..++...+. .+...++.+-|.|-+..|++|..||.|..||+++
T Consensus 100 ~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~-t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~ 178 (327)
T KOG0643|consen 100 DFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIP-TPDSKITSALWGPLGETIIAGHEDGSISIYDART 178 (327)
T ss_pred eeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEec-CCccceeeeeecccCCEEEEecCCCcEEEEEccc
Confidence 99999998887754 3689999997 445566665 6778999999999999999999999999999999
Q ss_pred Cc-eeEEeeCCccceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeecCCCCCCCCCCceeEEEEEcCCCCCeEEEEc
Q 010362 338 GK-LLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCN 416 (512)
Q Consensus 338 ~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~ 416 (512)
++ .+...+.|...|+++.++++..++++++.|.+-++||.++..+++++.. ..++++.+++|.....++.|+
T Consensus 179 g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~t-------e~PvN~aaisP~~d~VilgGG 251 (327)
T KOG0643|consen 179 GKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTT-------ERPVNTAAISPLLDHVILGGG 251 (327)
T ss_pred CceeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEeee-------cccccceecccccceEEecCC
Confidence 84 4566678999999999999999999999999999999999999999874 458999999998844444444
Q ss_pred CCCcEEEEecC---CeEEE---------EeeCCcccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCC
Q 010362 417 KTSSIYIMTLQ---GQVVK---------SFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQS 472 (512)
Q Consensus 417 ~~~~i~~~~~~---~~~~~---------~~~~~~~~~~~~~~~~~s~~g~~l~~g~~dg~i~iwd~~~ 472 (512)
.+.. -+-... ++... .+.....|-++|++++++|+|+..++|++||.|++.....
T Consensus 252 qeA~-dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h~Fd~ 318 (327)
T KOG0643|consen 252 QEAM-DVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLHHFDS 318 (327)
T ss_pred ceee-eeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCceEEEEEecc
Confidence 3322 221111 11111 1122234568899999999999999999999999986543
No 94
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=5.8e-28 Score=203.62 Aligned_cols=292 Identities=22% Similarity=0.302 Sum_probs=219.6
Q ss_pred cCcCceEEEEECCCCCEEEEEeCCCeEEEEEcCCCeeeccccccccceeeccCcceeEEEEcCCCCeEEEE-eCCCeEEE
Q 010362 211 GTKSHAECARFSPDGQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASG-SQDGKIKV 289 (512)
Q Consensus 211 ~h~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~-~~dg~i~v 289 (512)
+|.+.|+|++|+.||++||+++.|++|+||+++.-.....-.... ++ .-+..+.++|+||-+-++.. -...++++
T Consensus 84 gH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~--nv--e~dhpT~V~FapDc~s~vv~~~~g~~l~v 159 (420)
T KOG2096|consen 84 GHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQ--NV--EYDHPTRVVFAPDCKSVVVSVKRGNKLCV 159 (420)
T ss_pred ccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhc--cc--cCCCceEEEECCCcceEEEEEccCCEEEE
Confidence 999999999999999999999999999999987643221100000 00 12356788999997755544 44568999
Q ss_pred EEccC---Ceee--------EEeccccccCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeeCCccceeEEEEcC
Q 010362 290 WRIRS---GQCL--------RRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTN 358 (512)
Q Consensus 290 wd~~~---~~~~--------~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~ 358 (512)
|.+.. |... ..+...|...+..+-...++.+|++++.|..|.+|+++ |+.+..+......-...+.+|
T Consensus 160 yk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP 238 (420)
T KOG2096|consen 160 YKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSP 238 (420)
T ss_pred EEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-CceeeeeccccccccceeeCC
Confidence 98743 2211 11333466677777777788999999999999999997 999888887766777889999
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCc--eeeecCCCCCCCCCCceeEEEEEcCCCCCeEEEEcCCCcEEEEecCC-----eEE
Q 010362 359 DGSRVVTASSDCTVKVWDLKSTD--CLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQG-----QVV 431 (512)
Q Consensus 359 ~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~~~~~~-----~~~ 431 (512)
+|+++++++----|++|.+--++ ..+.......+.+|...|..++|+++. ..+++.+.||.+++||.+- +..
T Consensus 239 ~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S-~r~vtvSkDG~wriwdtdVrY~~~qDp 317 (420)
T KOG2096|consen 239 DGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSS-TRAVTVSKDGKWRIWDTDVRYEAGQDP 317 (420)
T ss_pred CCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCc-ceeEEEecCCcEEEeeccceEecCCCc
Confidence 99999999988889999864322 122233334567899999999999987 8999999999999999862 222
Q ss_pred EEeeCC----cccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCeeEEecc-ccCCCeEEEEEcCCCCeEEEEECCCe
Q 010362 432 KSFSSG----KREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMK-VHEKDVIGVTHHPHRNLLATYGEDCT 506 (512)
Q Consensus 432 ~~~~~~----~~~~~~~~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~~-~h~~~v~~v~~~p~~~~l~s~~~dg~ 506 (512)
+.+..+ ...++....+..+|+|+.++... ...+.+|..++|+....+. .|...|.+++|+|+|++++|+| |..
T Consensus 318 k~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~-gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcG-dr~ 395 (420)
T KOG2096|consen 318 KILKEGSAPLHAAGSEPVRLELSPSGDSLAVSF-GSDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIATCG-DRY 395 (420)
T ss_pred hHhhcCCcchhhcCCCceEEEeCCCCcEEEeec-CCceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEeeec-cee
Confidence 222222 12234456899999999887665 4679999999988776654 6899999999999999999998 566
Q ss_pred EEEe
Q 010362 507 MKLW 510 (512)
Q Consensus 507 i~iW 510 (512)
+++.
T Consensus 396 vrv~ 399 (420)
T KOG2096|consen 396 VRVI 399 (420)
T ss_pred eeee
Confidence 7764
No 95
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=7.1e-29 Score=215.99 Aligned_cols=267 Identities=18% Similarity=0.281 Sum_probs=213.5
Q ss_pred cccccccccccCcc---ccceEEEecCcCceEEEEECCCCCEEEEEeCCCeEEEEEcCCCeeeccccccccceeeccCcc
Q 010362 189 TAAMKQDVEDMYPT---TLSHTIKFGTKSHAECARFSPDGQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHDET 265 (512)
Q Consensus 189 ~~~~~~~~~~~~~~---~~~~~~~~~h~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~ 265 (512)
+.+....+|...+. +..+++. +|..+|..+.||||.++|++++.|..+.+||+.+|.....+.. +|...
T Consensus 243 SkD~Taiiw~v~~d~~~kl~~tlv-gh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~-------~~~~S 314 (519)
T KOG0293|consen 243 SKDSTAIIWIVVYDVHFKLKKTLV-GHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPS-------GLGFS 314 (519)
T ss_pred cCCceEEEEEEecCcceeeeeeee-cccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhccc-------CcCCC
Confidence 33333444544444 3466665 9999999999999999999999999999999999988765542 25688
Q ss_pred eeEEEEcCCCCeEEEEeCCCeEEEEEccCCeeeEEeccccccCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEee
Q 010362 266 VLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFR 345 (512)
Q Consensus 266 v~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~ 345 (512)
+.+++|.|||..+++|+.|+++..||++ |.............|.+++.++||+++++.+.|..|++++.++......+.
T Consensus 315 ~~sc~W~pDg~~~V~Gs~dr~i~~wdlD-gn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lis 393 (519)
T KOG0293|consen 315 VSSCAWCPDGFRFVTGSPDRTIIMWDLD-GNILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLIS 393 (519)
T ss_pred cceeEEccCCceeEecCCCCcEEEecCC-cchhhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhcccc
Confidence 9999999999999999999999999976 444555554445679999999999999999999999999987765554444
Q ss_pred CCccceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeecCCCCCCCCCCceeEEEEEcCCCCCeEEEEcCCCcEEEEe
Q 010362 346 GHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMT 425 (512)
Q Consensus 346 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~~~ 425 (512)
...+|++++.+.+++++++.-.+..+++||+.....+..+.... ...-+..-+|-..+..++++|+.|+.|++|+
T Consensus 394 -e~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghk----q~~fiIrSCFgg~~~~fiaSGSED~kvyIWh 468 (519)
T KOG0293|consen 394 -EEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHK----QGHFIIRSCFGGGNDKFIASGSEDSKVYIWH 468 (519)
T ss_pred -ccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhccc----ccceEEEeccCCCCcceEEecCCCceEEEEE
Confidence 34579999999999999999999999999999877777665332 1233444456666668999999999999999
Q ss_pred cC-CeEEEEeeCCcccCCcEEEEEECCC-CCEEEEEeCCCeEEEEEcCC
Q 010362 426 LQ-GQVVKSFSSGKREGGDFVAACVSPK-GEWIYCVGEDRNLYCFSHQS 472 (512)
Q Consensus 426 ~~-~~~~~~~~~~~~~~~~~~~~~~s~~-g~~l~~g~~dg~i~iwd~~~ 472 (512)
.. ++.+..+..+ ...+.+++|+|. -..+|+++.||+|+||....
T Consensus 469 r~sgkll~~LsGH---s~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 469 RISGKLLAVLSGH---SKTVNCVSWNPADPEMFASASDDGTIRIWGPSD 514 (519)
T ss_pred ccCCceeEeecCC---cceeeEEecCCCCHHHhhccCCCCeEEEecCCc
Confidence 88 6666666654 467999999995 55788999999999997653
No 96
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.97 E-value=1.3e-28 Score=239.63 Aligned_cols=255 Identities=22% Similarity=0.322 Sum_probs=208.9
Q ss_pred cCcCceEEEEECCCCCEEEEEeCCCeEEEEEcCC----------CeeeccccccccceeeccCcceeEEEEcCCCCeEEE
Q 010362 211 GTKSHAECARFSPDGQFLVSCSFDGFIEVWDYLS----------GKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLAS 280 (512)
Q Consensus 211 ~h~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~----------~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s 280 (512)
.|.+.|+|+.|+|||++||+||.|+.|.||.... |.....-.+.....+.+|...|..++|+|++.+||+
T Consensus 67 ~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS 146 (942)
T KOG0973|consen 67 DHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVS 146 (942)
T ss_pred cccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEE
Confidence 8999999999999999999999999999999873 112222234456688899999999999999999999
Q ss_pred EeCCCeEEEEEccCCeeeEEeccccccCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeeCC------ccceeEE
Q 010362 281 GSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRGH------SSYVNDA 354 (512)
Q Consensus 281 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~------~~~v~~~ 354 (512)
++.|++|.+||..+.+.+..+. +|.+.|..+.|.|-|++|++-+.|++|++|++.+....+.+..+ ......+
T Consensus 147 ~s~DnsViiwn~~tF~~~~vl~-~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~Rl 225 (942)
T KOG0973|consen 147 VSLDNSVIIWNAKTFELLKVLR-GHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRL 225 (942)
T ss_pred ecccceEEEEccccceeeeeee-cccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeec
Confidence 9999999999999998888887 99999999999999999999999999999998777777766553 2357889
Q ss_pred EEcCCCCEEEEEeC----CCcEEEEeCCCCceeeecCCCCCCCCCCceeEEEEEcCC----C--------CC----eEEE
Q 010362 355 IFTNDGSRVVTASS----DCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPK----N--------PD----HIVV 414 (512)
Q Consensus 355 ~~~~~~~~l~~~~~----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~----~--------~~----~l~~ 414 (512)
.|+|||.+|+++.. -.++.|.+-.+.+.... +.+|..++..++|+|. . ++ .+++
T Consensus 226 SWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~------LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~Av 299 (942)
T KOG0973|consen 226 SWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKD------LVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAV 299 (942)
T ss_pred ccCCCcCeecchhhccCCcceeEEEecCCceeeee------eecCCCceEEEEeChHHhccccccCCccCCCcceEEEEE
Confidence 99999999998643 33577777554443333 4588899999999974 1 11 6899
Q ss_pred EcCCCcEEEEecCCeEEEEeeCCcccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Q 010362 415 CNKTSSIYIMTLQGQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSG 473 (512)
Q Consensus 415 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~dg~i~iwd~~~~ 473 (512)
|+.|+.|.+|... .....+..+.-.+..|..++|+|||..|++++.||+|.++.+...
T Consensus 300 gSqDrSlSVW~T~-~~RPl~vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~ 357 (942)
T KOG0973|consen 300 GSQDRSLSVWNTA-LPRPLFVIHNLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFEEK 357 (942)
T ss_pred ecCCccEEEEecC-CCCchhhhhhhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcchH
Confidence 9999999999984 222222333334677999999999999999999999999998754
No 97
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.97 E-value=3.4e-28 Score=213.10 Aligned_cols=260 Identities=22% Similarity=0.291 Sum_probs=220.9
Q ss_pred ccccCccccceEEEecCcCceEEEEECCCCCEEEEEeCCCeEEEEEcCCCeeeccccccccceeeccCcceeEEEEcCCC
Q 010362 196 VEDMYPTTLSHTIKFGTKSHAECARFSPDGQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDS 275 (512)
Q Consensus 196 ~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~ 275 (512)
+.+.........++ ||.-.|+.+.|+|+...+++++.|-.|+||.......... ...|..+|+.+..+|.|
T Consensus 245 ~~d~~s~q~l~~~~-Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~--------~~~h~~~V~~ls~h~tg 315 (506)
T KOG0289|consen 245 LFDKPSNQILATLK-GHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTS--------SRPHEEPVTGLSLHPTG 315 (506)
T ss_pred EEecchhhhhhhcc-CcceEEEEEEeccchhheeecCCcceEEeeccccccCccc--------cccccccceeeeeccCC
Confidence 34445555666665 9999999999999999999999999999999876553332 33499999999999999
Q ss_pred CeEEEEeCCCeEEEEEccCCeeeEEeccc-cccCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeeCCccceeEE
Q 010362 276 EMLASGSQDGKIKVWRIRSGQCLRRLERA-HSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDA 354 (512)
Q Consensus 276 ~~l~s~~~dg~i~vwd~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~ 354 (512)
.||++++.||+..+.|+++|..+...... ..-.+++.+|+|||..|.+|+.||.|++||+.++..+..|.+|.++|..+
T Consensus 316 eYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i 395 (506)
T KOG0289|consen 316 EYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAI 395 (506)
T ss_pred cEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccCCCCCCceeEE
Confidence 99999999999999999999988777521 23458999999999999999999999999999999999999999999999
Q ss_pred EEcCCCCEEEEEeCCCcEEEEeCCCCceeeecCCCCCCCCCCceeEEEEEcCCCCCeEEEEcCCCcEEEEecCCeEEEEe
Q 010362 355 IFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQVVKSF 434 (512)
Q Consensus 355 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~ 434 (512)
+|+.+|-+|++++.|+.|++||+|..+...++.... ...+.++.|.+.+ .+++.++.+-.|++++-..+.....
T Consensus 396 ~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~-----~~~v~s~~fD~SG-t~L~~~g~~l~Vy~~~k~~k~W~~~ 469 (506)
T KOG0289|consen 396 SFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDE-----KKEVNSLSFDQSG-TYLGIAGSDLQVYICKKKTKSWTEI 469 (506)
T ss_pred EeccCceEEEEEecCCeEEEEEehhhcccceeeccc-----cccceeEEEcCCC-CeEEeecceeEEEEEecccccceee
Confidence 999999999999999999999999988777776543 3478999999988 7888888888888887665555555
Q ss_pred eCCcccCCcEEEEEECCCCCEEEEEeCCCeEEEEEc
Q 010362 435 SSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSH 470 (512)
Q Consensus 435 ~~~~~~~~~~~~~~~s~~g~~l~~g~~dg~i~iwd~ 470 (512)
.....+.+..+.+.|....+++++++.|..++++.+
T Consensus 470 ~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 470 KELADHSGLSTGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred ehhhhcccccceeeecccceEEeeccchhheEEeec
Confidence 555555567889999999999999999999888754
No 98
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.97 E-value=9.1e-29 Score=220.47 Aligned_cols=286 Identities=17% Similarity=0.260 Sum_probs=238.7
Q ss_pred ecCcCceEEEEECCCCCEEEEEeCCCeEEEEEcCCCeeeccccccccceeeccCcceeEEEEcCCCCeEEEEeCCCeEEE
Q 010362 210 FGTKSHAECARFSPDGQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQDGKIKV 289 (512)
Q Consensus 210 ~~h~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~v 289 (512)
..|..-|.++.+|...+++.||+ .|.|+|||+........+. .. .......-|.++...|||+.|++|+.-.++.|
T Consensus 416 L~HGEvVcAvtIS~~trhVyTgG-kgcVKVWdis~pg~k~Pvs--qL-dcl~rdnyiRSckL~pdgrtLivGGeastlsi 491 (705)
T KOG0639|consen 416 LAHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISQPGNKSPVS--QL-DCLNRDNYIRSCKLLPDGRTLIVGGEASTLSI 491 (705)
T ss_pred hccCcEEEEEEecCCcceeEecC-CCeEEEeeccCCCCCCccc--cc-cccCcccceeeeEecCCCceEEeccccceeee
Confidence 47888899999999999999999 6889999997543221111 00 01114567999999999999999999999999
Q ss_pred EEccCCeeeEEecc-ccccCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeeCCccceeEEEEcCCCCEEEEEeC
Q 010362 290 WRIRSGQCLRRLER-AHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASS 368 (512)
Q Consensus 290 wd~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 368 (512)
||+........... .....+.+++.+||.+..++++.||.|.|||+.+...++.|++|...+.||..+++|..|.||+-
T Consensus 492 WDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGl 571 (705)
T KOG0639|consen 492 WDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGL 571 (705)
T ss_pred eeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCC
Confidence 99987654332221 23356788999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEeCCCCceeeecCCCCCCCCCCceeEEEEEcCCCCCeEEEEcCCCcEEEEecCCeEEEEeeCCcccCCcEEEEE
Q 010362 369 DCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQVVKSFSSGKREGGDFVAAC 448 (512)
Q Consensus 369 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (512)
|.+|+.||+++++...... ....|.++..+|.+ +.+++|-.++.+.+....+.....+.. +..-|.++.
T Consensus 572 DntvRcWDlregrqlqqhd-------F~SQIfSLg~cP~~-dWlavGMens~vevlh~skp~kyqlhl---heScVLSlK 640 (705)
T KOG0639|consen 572 DNTVRCWDLREGRQLQQHD-------FSSQIFSLGYCPTG-DWLAVGMENSNVEVLHTSKPEKYQLHL---HESCVLSLK 640 (705)
T ss_pred ccceeehhhhhhhhhhhhh-------hhhhheecccCCCc-cceeeecccCcEEEEecCCccceeecc---cccEEEEEE
Confidence 9999999999988665543 34689999999988 999999999999998887655444443 345688999
Q ss_pred ECCCCCEEEEEeCCCeEEEEEcCCCeeEEeccccCCCeEEEEEcCCCCeEEEEECCCeEEEec
Q 010362 449 VSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPHRNLLATYGEDCTMKLWK 511 (512)
Q Consensus 449 ~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~~~dg~i~iW~ 511 (512)
|++.|+++++.+.|..+..|...-|..+...+ -.++|.++..+-|.++++|||.|....||.
T Consensus 641 Fa~cGkwfvStGkDnlLnawrtPyGasiFqsk-E~SsVlsCDIS~ddkyIVTGSGdkkATVYe 702 (705)
T KOG0639|consen 641 FAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK-ESSSVLSCDISFDDKYIVTGSGDKKATVYE 702 (705)
T ss_pred ecccCceeeecCchhhhhhccCccccceeecc-ccCcceeeeeccCceEEEecCCCcceEEEE
Confidence 99999999999999999999999898887766 467899999999999999999998888774
No 99
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.96 E-value=3.6e-28 Score=209.55 Aligned_cols=271 Identities=21% Similarity=0.318 Sum_probs=216.0
Q ss_pred eeccCcccccccccccCccccceEEEecCcCceEEEEECCCC---CEEEEEeCCCeEEEEEcCCCeeeccccccccceee
Q 010362 184 DLFRGTAAMKQDVEDMYPTTLSHTIKFGTKSHAECARFSPDG---QFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFM 260 (512)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~---~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 260 (512)
-++.|.-++...+|+... +..+.+. ||.++|.+++|-... ..|++++.|.++++|.++.++...... ....
T Consensus 117 ~IltgsYDg~~riWd~~G-k~~~~~~-Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~----~~~~ 190 (423)
T KOG0313|consen 117 WILTGSYDGTSRIWDLKG-KSIKTIV-GHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKAL----KVCR 190 (423)
T ss_pred eEEEeecCCeeEEEecCC-ceEEEEe-cCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHH----hHhc
Confidence 344455555666776544 4444554 999999988875433 359999999999999998876554322 2334
Q ss_pred ccCcceeEEEEcCCCCeEEEEeCCCeEEEEEccC-------------------------CeeeEEeccccccCeEEEEEe
Q 010362 261 MHDETVLCIEFSRDSEMLASGSQDGKIKVWRIRS-------------------------GQCLRRLERAHSEGVTSLVFS 315 (512)
Q Consensus 261 ~h~~~v~~l~~s~~~~~l~s~~~dg~i~vwd~~~-------------------------~~~~~~~~~~~~~~i~~~~~~ 315 (512)
||...|.+++..++|..+++|+.|.+|++|+..+ +.++..+. +|..+|.++.|+
T Consensus 191 GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~-GHt~~Vs~V~w~ 269 (423)
T KOG0313|consen 191 GHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLE-GHTEPVSSVVWS 269 (423)
T ss_pred ccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEec-ccccceeeEEEc
Confidence 8999999999999999999999999999999321 12344454 899999999999
Q ss_pred cCCCEEEEEeCCCcEEEEeCCCCceeEEeeCCccceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeecCCCCCCCCC
Q 010362 316 RDGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGG 395 (512)
Q Consensus 316 ~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 395 (512)
+ ...+++++.|.+|+.||+.++..+.++.+. ...+|+..+|..++|++|+.|..|++||.+++.-.. ....+.+|
T Consensus 270 d-~~v~yS~SwDHTIk~WDletg~~~~~~~~~-ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~---v~~s~~gH 344 (423)
T KOG0313|consen 270 D-ATVIYSVSWDHTIKVWDLETGGLKSTLTTN-KSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSV---VSQSLIGH 344 (423)
T ss_pred C-CCceEeecccceEEEEEeecccceeeeecC-cceeEeecccccceeeecCCCCceeecCCCCCCCce---eEEeeecc
Confidence 7 678999999999999999999999888754 459999999999999999999999999999873211 11234578
Q ss_pred CceeEEEEEcCCCCCeEEEEcCCCcEEEEecCCe--EEEEeeCCcccCCcEEEEEECCCCCEEEEEeCCCeEEEEEc
Q 010362 396 DASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQ--VVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSH 470 (512)
Q Consensus 396 ~~~i~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~dg~i~iwd~ 470 (512)
..-|.++.|+|.+...+++++.|+.+++||.+.. ++..+.. +...+.++.|. ++.+|++|+.|.+|+|+.-
T Consensus 345 ~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~---h~DKvl~vdW~-~~~~IvSGGaD~~l~i~~~ 417 (423)
T KOG0313|consen 345 KNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAG---HNDKVLSVDWN-EGGLIVSGGADNKLRIFKG 417 (423)
T ss_pred hhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeecc---CCceEEEEecc-CCceEEeccCcceEEEecc
Confidence 9999999999999999999999999999999943 3333333 46678888886 5678999999999999864
No 100
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.96 E-value=6.5e-27 Score=220.97 Aligned_cols=327 Identities=19% Similarity=0.287 Sum_probs=265.0
Q ss_pred CCCCCCCe-eeeccCcccccccccccCccccceEEEecCcCceEEEEECCCCCEEEEEeCCCeEEEEEcCCCeeeccccc
Q 010362 175 GLLPPGTQ-FDLFRGTAAMKQDVEDMYPTTLSHTIKFGTKSHAECARFSPDGQFLVSCSFDGFIEVWDYLSGKLKKDLQY 253 (512)
Q Consensus 175 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~ 253 (512)
.++||... ..++.|...+....|+....+..++++ ++.+.|+++.=+|-=+.+|.|..+|+|.|+++..++.+..++
T Consensus 164 al~HP~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~-~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk- 241 (910)
T KOG1539|consen 164 ALLHPSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQ-EFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFK- 241 (910)
T ss_pred eEecchhheeeEEEeecCCcEEEEEeccCcEEEEec-ccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEE-
Confidence 45555544 346667788888999999999999998 888999999999999999999999999999999999887665
Q ss_pred cccceeeccC-cceeEEEEcCCCC-eEEEEeCCCeEEEEEccCCeeeEEeccccccCeEEEEEecCCCEEEEEeCCCcEE
Q 010362 254 QADETFMMHD-ETVLCIEFSRDSE-MLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTAR 331 (512)
Q Consensus 254 ~~~~~~~~h~-~~v~~l~~s~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~ 331 (512)
|. +.|+.++|..||+ .+|+|+..|.+.+||++..+.+..+...|.+.|....|.|....+++++.|+.++
T Consensus 242 --------~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk 313 (910)
T KOG1539|consen 242 --------QDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLK 313 (910)
T ss_pred --------ccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCcee
Confidence 64 9999999999987 5667777799999999999888888878999999999999999999999999988
Q ss_pred EEeCCCC----ceeEEeeCCccceeEEEEc-CCCCEEEEEeCCCcEEEEeCCCCceee----------------------
Q 010362 332 IHGLKSG----KLLKEFRGHSSYVNDAIFT-NDGSRVVTASSDCTVKVWDLKSTDCLQ---------------------- 384 (512)
Q Consensus 332 i~d~~~~----~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~dg~i~iwd~~~~~~~~---------------------- 384 (512)
+|=.+++ +.++.-.||..+..++.|. .+|..+.+++.|++.+.+++.....-+
T Consensus 314 ~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~ 393 (910)
T KOG1539|consen 314 VWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKL 393 (910)
T ss_pred EEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhh
Confidence 8755433 4456667899999999987 577788888888877777653211000
Q ss_pred -------------------------------------------ecCCCCCCCCCCceeEEEEEcCCCCCeEEEEcCCCcE
Q 010362 385 -------------------------------------------TFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSI 421 (512)
Q Consensus 385 -------------------------------------------~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i 421 (512)
-.-.+.........+.+++.++.+ ++.+.|...|.|
T Consensus 394 k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CG-NF~~IG~S~G~I 472 (910)
T KOG1539|consen 394 KLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCG-NFVFIGYSKGTI 472 (910)
T ss_pred cCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccC-ceEEEeccCCeE
Confidence 000000111123567888888877 899999999999
Q ss_pred EEEecCC-eEEEEeeCCcccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCeeE------------------------
Q 010362 422 YIMTLQG-QVVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLE------------------------ 476 (512)
Q Consensus 422 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~------------------------ 476 (512)
-+|+++. -....+.....+..+++.++...-++.+++++.+|.+.+||.+.+.++
T Consensus 473 d~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~ 552 (910)
T KOG1539|consen 473 DRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIA 552 (910)
T ss_pred EEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhh
Confidence 9999994 455556556677889999999999999999999999999998765422
Q ss_pred -----------------EeccccCCCeEEEEEcCCCCeEEEEECCCeEEEecC
Q 010362 477 -----------------HLMKVHEKDVIGVTHHPHRNLLATYGEDCTMKLWKP 512 (512)
Q Consensus 477 -----------------~~~~~h~~~v~~v~~~p~~~~l~s~~~dg~i~iW~~ 512 (512)
+.+.+|.+.|++++|||||++|++++.|++|++||.
T Consensus 553 ~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDl 605 (910)
T KOG1539|consen 553 LDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDL 605 (910)
T ss_pred cCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEec
Confidence 234579999999999999999999999999999984
No 101
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.96 E-value=1.3e-28 Score=214.41 Aligned_cols=267 Identities=20% Similarity=0.309 Sum_probs=227.2
Q ss_pred eccCcccccccccccCccc--cceEEEecCcCceEEEEECCCCCEEEEEeCCCeEEEEEcCCCeeeccccccccceeecc
Q 010362 185 LFRGTAAMKQDVEDMYPTT--LSHTIKFGTKSHAECARFSPDGQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMH 262 (512)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~h~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h 262 (512)
+..+..+.....|+..+.+ ...++. |..+.|+.+.|.+++.++++++.|+.+++|+++..+... ++.||
T Consensus 190 latgg~Dr~Ik~W~v~~~k~~~~~tLa-Gs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~--------TLsGH 260 (459)
T KOG0288|consen 190 LATGGSDRIIKLWNVLGEKSELISTLA-GSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRH--------TLSGH 260 (459)
T ss_pred hhhcchhhhhhhhhcccchhhhhhhhh-ccCCCcceeeecCCCceEEeecCCCceeeeeccchhhhh--------hhccc
Confidence 3445555566778877776 444554 888999999999999999999999999999998877665 55679
Q ss_pred CcceeEEEEcCCCCeEEEEeCCCeEEEEEccCCeeeEEeccccccCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeE
Q 010362 263 DETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLK 342 (512)
Q Consensus 263 ~~~v~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~ 342 (512)
...|+++.|......+++|+.|.+|++||+....+.+++. ....+..++.+ ...+++|-.|+.|++||.++..+..
T Consensus 261 tdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l--~~S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~~~~ 336 (459)
T KOG0288|consen 261 TDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVL--PGSQCNDIVCS--ISDVISGHFDKKVRFWDIRSADKTR 336 (459)
T ss_pred ccceeeehhhccccceeeccccchhhhhhhhhhheecccc--ccccccceEec--ceeeeecccccceEEEeccCCceee
Confidence 9999999999887779999999999999999999888875 45566777766 5678899999999999999999999
Q ss_pred EeeCCccceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeecCCCCCCCCCCceeEEEEEcCCCCCeEEEEcCCCcEE
Q 010362 343 EFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIY 422 (512)
Q Consensus 343 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~ 422 (512)
+...+. .|+++..++++..+.+++.|.++.+.|+++......+.......+++ .+.+.|+|++ .++++|+.||.++
T Consensus 337 sv~~gg-~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asD--wtrvvfSpd~-~YvaAGS~dgsv~ 412 (459)
T KOG0288|consen 337 SVPLGG-RVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASD--WTRVVFSPDG-SYVAAGSADGSVY 412 (459)
T ss_pred EeecCc-ceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccc--cceeEECCCC-ceeeeccCCCcEE
Confidence 998776 79999999999999999999999999999999888887665444443 8889999988 9999999999999
Q ss_pred EEecCCeEEEEeeCCcccCCcEEEEEECCCCCEEEEEeCCCeEEEE
Q 010362 423 IMTLQGQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCF 468 (512)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~dg~i~iw 468 (512)
+|+..+..+............|+++.|+|.|..+++++.++.+.+|
T Consensus 413 iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW 458 (459)
T KOG0288|consen 413 IWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLW 458 (459)
T ss_pred EEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEec
Confidence 9999966665555555445579999999999999999999999998
No 102
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=1.6e-28 Score=199.45 Aligned_cols=258 Identities=22% Similarity=0.296 Sum_probs=206.5
Q ss_pred ceEEEecCcCceEEEEECCCCCEEEEEeCCCeEEEEEcCCCeeeccccccccceeeccCcceeEEEEcC--CCCeEEEEe
Q 010362 205 SHTIKFGTKSHAECARFSPDGQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSR--DSEMLASGS 282 (512)
Q Consensus 205 ~~~~~~~h~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~--~~~~l~s~~ 282 (512)
.+++...|++-|..+...--|+.|||++.|++|+|+.+..+... .....+.||.++|..++|.. -|.+||+|+
T Consensus 3 ~q~idt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s-----~ll~~L~Gh~GPVwqv~wahPk~G~iLAScs 77 (299)
T KOG1332|consen 3 MQTIDTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQS-----KLLAELTGHSGPVWKVAWAHPKFGTILASCS 77 (299)
T ss_pred ceehhhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCc-----eeeeEecCCCCCeeEEeecccccCcEeeEee
Confidence 35566789999999999889999999999999999998765431 23447889999999999987 799999999
Q ss_pred CCCeEEEEEccCCeeeEEec-cccccCeEEEEEecC--CCEEEEEeCCCcEEEEeCCCC---ceeEEeeCCccceeEEEE
Q 010362 283 QDGKIKVWRIRSGQCLRRLE-RAHSEGVTSLVFSRD--GSQILSTSFDSTARIHGLKSG---KLLKEFRGHSSYVNDAIF 356 (512)
Q Consensus 283 ~dg~i~vwd~~~~~~~~~~~-~~~~~~i~~~~~~~~--~~~l~~~~~dg~v~i~d~~~~---~~~~~~~~~~~~v~~~~~ 356 (512)
.||.|.||.-.+|+-.+... ..|...|++++|.|. |-.|++++.||.|.+.+.++. ...+....|.-.|++++|
T Consensus 78 YDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVsw 157 (299)
T KOG1332|consen 78 YDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSW 157 (299)
T ss_pred cCceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeee
Confidence 99999999988875322221 368899999999985 678999999999999988654 223345679999999999
Q ss_pred cCC---C-----------CEEEEEeCCCcEEEEeCCCCceeeecCCCCCCCCCCceeEEEEEcCCC---CCeEEEEcCCC
Q 010362 357 TND---G-----------SRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKN---PDHIVVCNKTS 419 (512)
Q Consensus 357 ~~~---~-----------~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---~~~l~~~~~~~ 419 (512)
.|. | +.|++|+.|..|+||+..++ .......+.+|..-+..++|.|.. ...+++|+.||
T Consensus 158 apa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~----~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg 233 (299)
T KOG1332|consen 158 APASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSD----SWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDG 233 (299)
T ss_pred cCcCCCccccccCcccccceeeccCCccceeeeecCCc----chhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCC
Confidence 985 4 56999999999999999886 233334467899999999999974 45799999999
Q ss_pred cEEEEecCCe-EEEEeeCCcccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcC
Q 010362 420 SIYIMTLQGQ-VVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQ 471 (512)
Q Consensus 420 ~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~dg~i~iwd~~ 471 (512)
++.+|..+.. ..............+..+.||+.|+.|++++.|+.|.+|.-.
T Consensus 234 ~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~ 286 (299)
T KOG1332|consen 234 TVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKEN 286 (299)
T ss_pred cEEEEEecCccCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeC
Confidence 9999998722 111111111234568899999999999999999999999754
No 103
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.96 E-value=5.7e-29 Score=210.15 Aligned_cols=277 Identities=23% Similarity=0.397 Sum_probs=233.9
Q ss_pred CCCCCCeeeeccCcccccccccccCccccceEEEe-------cCcCceEEEEECCCCCEEEEEeCCCeEEEEEcCCCeee
Q 010362 176 LLPPGTQFDLFRGTAAMKQDVEDMYPTTLSHTIKF-------GTKSHAECARFSPDGQFLVSCSFDGFIEVWDYLSGKLK 248 (512)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~h~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~ 248 (512)
.|.|++. .++.|..++...+|+....+....+++ -+.+.|.|+.||.|...+|+|+.||.|+||.+.+|.+.
T Consensus 220 ~FSPDgq-yLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~Cl 298 (508)
T KOG0275|consen 220 RFSPDGQ-YLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCL 298 (508)
T ss_pred eeCCCCc-eEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEEecchHH
Confidence 4444433 456677778888999888877766653 47789999999999999999999999999999999998
Q ss_pred ccccccccceeeccCcceeEEEEcCCCCeEEEEeCCCeEEEEEccCCeeeEEeccccccCeEEEEEecCCCEEEEEeCCC
Q 010362 249 KDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDS 328 (512)
Q Consensus 249 ~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg 328 (512)
+.+.. .|+..|+|+.|+.|+..+++++.|.++++.-+.+|++++.+. +|...|+...|.+||+++++++.||
T Consensus 299 RrFdr-------AHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfr-GHsSyvn~a~ft~dG~~iisaSsDg 370 (508)
T KOG0275|consen 299 RRFDR-------AHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFR-GHSSYVNEATFTDDGHHIISASSDG 370 (508)
T ss_pred HHhhh-------hhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhc-CccccccceEEcCCCCeEEEecCCc
Confidence 87652 499999999999999999999999999999999999999997 9999999999999999999999999
Q ss_pred cEEEEeCCCCceeEEeeC--CccceeEEEEcC-CCCEEEEEeCCCcEEEEeCCCCceeeecCCCCCCCCCCceeEEEEEc
Q 010362 329 TARIHGLKSGKLLKEFRG--HSSYVNDAIFTN-DGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLF 405 (512)
Q Consensus 329 ~v~i~d~~~~~~~~~~~~--~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 405 (512)
+|++|+.++.+++.+++. ...+|+++..-| +...++++...+++.|-++. |+.++++.... ...+...+...+
T Consensus 371 tvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q-GQvVrsfsSGk---REgGdFi~~~lS 446 (508)
T KOG0275|consen 371 TVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ-GQVVRSFSSGK---REGGDFINAILS 446 (508)
T ss_pred cEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEecc-ceEEeeeccCC---ccCCceEEEEec
Confidence 999999999999999875 345788888877 45678889999999999975 66777776543 244566777889
Q ss_pred CCCCCeEEEEcCCCcEEEEecC-CeEEEEeeCCcccCCcEEEEEECCCCCEEEEEeCCCeEEEEE
Q 010362 406 PKNPDHIVVCNKTSSIYIMTLQ-GQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFS 469 (512)
Q Consensus 406 ~~~~~~l~~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~dg~i~iwd 469 (512)
|.+ ..+.+.+.|+.++.+... |.....+..+ ...+..++-+|..+.+++-++||.+++|.
T Consensus 447 pkG-ewiYcigED~vlYCF~~~sG~LE~tl~Vh---EkdvIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 447 PKG-EWIYCIGEDGVLYCFSVLSGKLERTLPVH---EKDVIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred CCC-cEEEEEccCcEEEEEEeecCceeeeeecc---cccccccccCcccchhhhhcccchhhhcC
Confidence 988 899999999999999987 4444444433 34578899999999999999999999994
No 104
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=1.9e-27 Score=211.71 Aligned_cols=240 Identities=22% Similarity=0.324 Sum_probs=200.8
Q ss_pred cCcCceEEEEECCCCCEEEEEeCCCeEEEEEcCCCeeeccccccccceeeccCcceeEEEEcCC-CCeEEEEeCCCeEEE
Q 010362 211 GTKSHAECARFSPDGQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRD-SEMLASGSQDGKIKV 289 (512)
Q Consensus 211 ~h~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~-~~~l~s~~~dg~i~v 289 (512)
..+..|.++.|-.||++||+|...|.|+|||..+....+ .+.+|..+|..+.|+|+ +..+++|+.|+.+++
T Consensus 66 rFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR--------~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~ 137 (487)
T KOG0310|consen 66 RFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILR--------QLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKY 137 (487)
T ss_pred hhccceeEEEeecCCeEEEccCCcCcEEEeccccHHHHH--------HHhhccCceeEEEecccCCeEEEecCCCceEEE
Confidence 556789999999999999999999999999966644443 34569999999999994 567888999999999
Q ss_pred EEccCCeeeEEeccccccCeEEEEEecC-CCEEEEEeCCCcEEEEeCCCC-ceeEEeeCCccceeEEEEcCCCCEEEEEe
Q 010362 290 WRIRSGQCLRRLERAHSEGVTSLVFSRD-GSQILSTSFDSTARIHGLKSG-KLLKEFRGHSSYVNDAIFTNDGSRVVTAS 367 (512)
Q Consensus 290 wd~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~v~i~d~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 367 (512)
||+.+......+. +|+..|.|.+|+|- +..+++|+.||.|++||+++. ..+.++. |..+|.++.+-|.|..+++++
T Consensus 138 ~d~s~a~v~~~l~-~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~eln-hg~pVe~vl~lpsgs~iasAg 215 (487)
T KOG0310|consen 138 WDLSTAYVQAELS-GHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELN-HGCPVESVLALPSGSLIASAG 215 (487)
T ss_pred EEcCCcEEEEEec-CCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEec-CCCceeeEEEcCCCCEEEEcC
Confidence 9999988755665 99999999999995 568899999999999999987 5666665 889999999999999999988
Q ss_pred CCCcEEEEeCCCCceeeecCCCCCCCCCCceeEEEEEcCCCCCeEEEEcCCCcEEEEecCC-eEEEEeeCCcccCCcEEE
Q 010362 368 SDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQG-QVVKSFSSGKREGGDFVA 446 (512)
Q Consensus 368 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~ 446 (512)
.+ .+++||+.+|....... ..|...|+|+++..++ ..+++++-|+.+++||... +.+..+.. .+++.+
T Consensus 216 Gn-~vkVWDl~~G~qll~~~-----~~H~KtVTcL~l~s~~-~rLlS~sLD~~VKVfd~t~~Kvv~s~~~----~~pvLs 284 (487)
T KOG0310|consen 216 GN-SVKVWDLTTGGQLLTSM-----FNHNKTVTCLRLASDS-TRLLSGSLDRHVKVFDTTNYKVVHSWKY----PGPVLS 284 (487)
T ss_pred CC-eEEEEEecCCceehhhh-----hcccceEEEEEeecCC-ceEeecccccceEEEEccceEEEEeeec----ccceee
Confidence 54 79999999765433322 2378899999999877 8999999999999999764 44444433 467999
Q ss_pred EEECCCCCEEEEEeCCCeEEEEEcC
Q 010362 447 ACVSPKGEWIYCVGEDRNLYCFSHQ 471 (512)
Q Consensus 447 ~~~s~~g~~l~~g~~dg~i~iwd~~ 471 (512)
++++|+++.++.|..||.+.+-+..
T Consensus 285 iavs~dd~t~viGmsnGlv~~rr~~ 309 (487)
T KOG0310|consen 285 IAVSPDDQTVVIGMSNGLVSIRRRE 309 (487)
T ss_pred EEecCCCceEEEecccceeeeehhh
Confidence 9999999999999999998887543
No 105
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=5.8e-27 Score=207.08 Aligned_cols=288 Identities=13% Similarity=0.206 Sum_probs=231.0
Q ss_pred CcCceEEEEECCCCCEEEEEeCCCeEEEEEcCCCeeeccccccccceeeccCcceeEEEEcCCCC-eEEEEeCCCeEEEE
Q 010362 212 TKSHAECARFSPDGQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSE-MLASGSQDGKIKVW 290 (512)
Q Consensus 212 h~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~-~l~s~~~dg~i~vw 290 (512)
..+.|+|+.|+|....+++|+.||+++||.++..... .+ +.+.--..+|.+.+|.|+|. .+++++....++.|
T Consensus 212 s~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~-~l-----qS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysy 285 (514)
T KOG2055|consen 212 SHGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNP-KL-----QSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSY 285 (514)
T ss_pred CcCCceEEEecCCCceEEEecCCCcEEEEEecCccCh-hh-----eeeeeccCccceeeecCCCceEEEecccceEEEEe
Confidence 3467999999999999999999999999998654321 11 22333678999999999999 89999999999999
Q ss_pred EccCCeeeEE--eccccccCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeeCCccceeEEEEcCCCCEEEEEeC
Q 010362 291 RIRSGQCLRR--LERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASS 368 (512)
Q Consensus 291 d~~~~~~~~~--~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 368 (512)
|+.+.+..+. ........+..+..+|++++|+..+..|.|.+....+++.+.+++ -.+.|.+++|+.+++.|++++.
T Consensus 286 Dle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~~fsSdsk~l~~~~~ 364 (514)
T KOG2055|consen 286 DLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSDFTFSSDSKELLASGG 364 (514)
T ss_pred eccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheee-eccEEeeEEEecCCcEEEEEcC
Confidence 9998874332 221123467888999999999999999999999999999999888 4567999999999999999999
Q ss_pred CCcEEEEeCCCCceeeecCCCCCCCCCCceeEEEEEcCCCCCeEEEEcCCCcEEEEecCC----eEEEEeeCCcccCCcE
Q 010362 369 DCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQG----QVVKSFSSGKREGGDF 444 (512)
Q Consensus 369 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~~~~~~----~~~~~~~~~~~~~~~~ 444 (512)
+|.|.+||++...++..+..... ..-++++.++++ .++++|+..|.|-|||.+. ...+.......-...|
T Consensus 365 ~GeV~v~nl~~~~~~~rf~D~G~-----v~gts~~~S~ng-~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~I 438 (514)
T KOG2055|consen 365 TGEVYVWNLRQNSCLHRFVDDGS-----VHGTSLCISLNG-SYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAI 438 (514)
T ss_pred CceEEEEecCCcceEEEEeecCc-----cceeeeeecCCC-ceEEeccCcceEEEeccchhhccCCCCchhhhhhhheee
Confidence 99999999999999888874432 233566666766 7999999999999999752 2222222222334678
Q ss_pred EEEEECCCCCEEEEEe--CCCeEEEEEcCCCeeEEecccc---CCCeEEEEEcCCCCeEEEEECCCeEEEecC
Q 010362 445 VAACVSPKGEWIYCVG--EDRNLYCFSHQSGKLEHLMKVH---EKDVIGVTHHPHRNLLATYGEDCTMKLWKP 512 (512)
Q Consensus 445 ~~~~~s~~g~~l~~g~--~dg~i~iwd~~~~~~~~~~~~h---~~~v~~v~~~p~~~~l~s~~~dg~i~iW~~ 512 (512)
+.+.|++|++.|+.++ .+..+++-.+.+-.....++.. -+.|+|++|+|.+.+||.|..+|.|.+|+.
T Consensus 439 tsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL 511 (514)
T KOG2055|consen 439 TSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKL 511 (514)
T ss_pred eeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEee
Confidence 9999999999998888 5667999988877766666543 356899999999999999999999999973
No 106
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.96 E-value=1.3e-27 Score=219.20 Aligned_cols=290 Identities=20% Similarity=0.310 Sum_probs=213.8
Q ss_pred EEECC---CCCEEEEEeCCCeEEEEEcCCCeeeccccccccceeeccCcceeEEEEcCCCCeEEEEeCCCeEEEEEccCC
Q 010362 219 ARFSP---DGQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSG 295 (512)
Q Consensus 219 ~~~s~---~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~vwd~~~~ 295 (512)
+.|++ ....||.+..||.|.++|....... +.......+..|...|..+.|.|....|++++.|.++++||+.++
T Consensus 55 ~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr--~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s 132 (720)
T KOG0321|consen 55 DSFSAAPNKEHILAVADEDGGIILFDTKSIVFR--LEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTS 132 (720)
T ss_pred ccccCCCCccceEEEecCCCceeeecchhhhcc--hhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccc
Confidence 55655 3467999999999999997654332 111222345669999999999997778999999999999999998
Q ss_pred eeeEE--eccccccCeEEEEEecC-CCEEEEEeCCCcEEEEeCCCCc---------------------------eeEEee
Q 010362 296 QCLRR--LERAHSEGVTSLVFSRD-GSQILSTSFDSTARIHGLKSGK---------------------------LLKEFR 345 (512)
Q Consensus 296 ~~~~~--~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~v~i~d~~~~~---------------------------~~~~~~ 345 (512)
++... +. +|...|.+++|.|. ...|++|+.||.|.+||++-.. .+...+
T Consensus 133 ~l~G~~~~~-GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~k 211 (720)
T KOG0321|consen 133 RLVGGRLNL-GHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWK 211 (720)
T ss_pred eeecceeec-ccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccc
Confidence 87765 54 89999999999995 5678899999999999986321 011122
Q ss_pred CCccceeE---EEEcCCCCEEEEEeC-CCcEEEEeCCCCceeeecCCCCCC--CC---CCceeEEEEEcCCCCCeEEEEc
Q 010362 346 GHSSYVND---AIFTNDGSRVVTASS-DCTVKVWDLKSTDCLQTFKPPPPL--RG---GDASVNSVHLFPKNPDHIVVCN 416 (512)
Q Consensus 346 ~~~~~v~~---~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~--~~---~~~~i~~~~~~~~~~~~l~~~~ 416 (512)
.+...|.+ +.+..|...|++++. |+.|+|||++.........+.... .. ....+.++.....+..+++.|.
T Consensus 212 A~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCt 291 (720)
T KOG0321|consen 212 AASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCT 291 (720)
T ss_pred cccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEec
Confidence 34444444 555667888999888 999999999987655544333211 11 2345677777777755555555
Q ss_pred CCCcEEEEecCCeEEEEe--eCCcccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCe-eEEeccccCCCeEEEEEcC
Q 010362 417 KTSSIYIMTLQGQVVKSF--SSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGK-LEHLMKVHEKDVIGVTHHP 493 (512)
Q Consensus 417 ~~~~i~~~~~~~~~~~~~--~~~~~~~~~~~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~-~~~~~~~h~~~v~~v~~~p 493 (512)
|+.|++|++.+..+... ..+..........+.+||+.++++|+.|+..++|.+.+.+ ....+.+|.-.|++++|.|
T Consensus 292 -D~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~p 370 (720)
T KOG0321|consen 292 -DNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLP 370 (720)
T ss_pred -CCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeecc
Confidence 99999999985433222 2222223344567789999999999999999999998765 4566789999999999999
Q ss_pred C-CCeEEEEECCCeEEEecC
Q 010362 494 H-RNLLATYGEDCTMKLWKP 512 (512)
Q Consensus 494 ~-~~~l~s~~~dg~i~iW~~ 512 (512)
. -.-+++|++|.+++||+.
T Consensus 371 S~~t~v~TcSdD~~~kiW~l 390 (720)
T KOG0321|consen 371 SATTPVATCSDDFRVKIWRL 390 (720)
T ss_pred ccCCCceeeccCcceEEEec
Confidence 3 345778899999999973
No 107
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=6.1e-27 Score=197.30 Aligned_cols=256 Identities=18% Similarity=0.273 Sum_probs=203.4
Q ss_pred cCcCceEEEEECCCCCEEEEEeCCCeEEEEEcCCCeeeccccccccceeeccCcceeEEEEcCCCC--eEEEEeCCCeEE
Q 010362 211 GTKSHAECARFSPDGQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSE--MLASGSQDGKIK 288 (512)
Q Consensus 211 ~h~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~--~l~s~~~dg~i~ 288 (512)
.|.+.|+|++. +|.++|+||.|-+|+|||+........+ ..|.+.|+++.|.++-. .|++|+.||.|.
T Consensus 41 aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~~qlg~l--------l~HagsitaL~F~~~~S~shLlS~sdDG~i~ 110 (362)
T KOG0294|consen 41 AHAGSITALAV--SGPYVASGSSDETIHIYDMRKRKQLGIL--------LSHAGSITALKFYPPLSKSHLLSGSDDGHII 110 (362)
T ss_pred ccccceeEEEe--cceeEeccCCCCcEEEEeccchhhhcce--------eccccceEEEEecCCcchhheeeecCCCcEE
Confidence 89999999998 5889999999999999999877655443 34999999999999765 899999999999
Q ss_pred EEEccCCeeeEEeccccccCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeeCCccceeEEEEcCCCCEEEEEeC
Q 010362 289 VWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASS 368 (512)
Q Consensus 289 vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 368 (512)
+|+...-.++..+. +|.+.|+.++.+|.+++-++.+.|+.++.||+-+|+.-...+-.. ..+.+.|+|.|.+++.++.
T Consensus 111 iw~~~~W~~~~slK-~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~-~at~v~w~~~Gd~F~v~~~ 188 (362)
T KOG0294|consen 111 IWRVGSWELLKSLK-AHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKN-KATLVSWSPQGDHFVVSGR 188 (362)
T ss_pred EEEcCCeEEeeeec-ccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccCC-cceeeEEcCCCCEEEEEec
Confidence 99999999999997 899999999999999999999999999999998887655554322 2344999999999999887
Q ss_pred CCcEEEEeCCCCceeeecCCCCCCCCCCceeEEEEEcCCCCCeEEEEcCCCcEEEEecCC-eEEEEeeCCcccCCcEEEE
Q 010362 369 DCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQG-QVVKSFSSGKREGGDFVAA 447 (512)
Q Consensus 369 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~ 447 (512)
++ |-+|.+.+......+..+ ..+.++.| .....+++|..++.|.+||.+. .....+.. |...|-.+
T Consensus 189 ~~-i~i~q~d~A~v~~~i~~~-------~r~l~~~~--l~~~~L~vG~d~~~i~~~D~ds~~~~~~~~A---H~~RVK~i 255 (362)
T KOG0294|consen 189 NK-IDIYQLDNASVFREIENP-------KRILCATF--LDGSELLVGGDNEWISLKDTDSDTPLTEFLA---HENRVKDI 255 (362)
T ss_pred cE-EEEEecccHhHhhhhhcc-------ccceeeee--cCCceEEEecCCceEEEeccCCCccceeeec---chhheeee
Confidence 74 999999887666555432 23444444 4457999999999999999985 33333333 44567776
Q ss_pred EE--CCCCCEEEEEeCCCeEEEEEcCCC-----eeEEeccccCCCeEEEEEc
Q 010362 448 CV--SPKGEWIYCVGEDRNLYCFSHQSG-----KLEHLMKVHEKDVIGVTHH 492 (512)
Q Consensus 448 ~~--s~~g~~l~~g~~dg~i~iwd~~~~-----~~~~~~~~h~~~v~~v~~~ 492 (512)
.+ .|++.+|++++.||.|++||+... +++..+.. ...++|+...
T Consensus 256 ~~~~~~~~~~lvTaSSDG~I~vWd~~~~~k~~~~~l~e~n~-~~RltCl~~~ 306 (362)
T KOG0294|consen 256 ASYTNPEHEYLVTASSDGFIKVWDIDMETKKRPTLLAELNT-NVRLTCLRVK 306 (362)
T ss_pred EEEecCCceEEEEeccCceEEEEEccccccCCcceeEEeec-CCccceeeeh
Confidence 64 788999999999999999999865 34444442 4556666543
No 108
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=3.1e-26 Score=184.07 Aligned_cols=260 Identities=22% Similarity=0.330 Sum_probs=209.6
Q ss_pred CccccceEEEecCcCceEEEEECCCCCEEEEEeCCCeEEEEEcCCCeeeccccccccceeeccCcceeEEEEcCC----C
Q 010362 200 YPTTLSHTIKFGTKSHAECARFSPDGQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRD----S 275 (512)
Q Consensus 200 ~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~----~ 275 (512)
+|+.....-.-+|++.|.|.+|||+|+++|+|+.|.+|++.-++....... ...-.+..|.+.|..++|-.+ +
T Consensus 76 ~pp~v~~kr~khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~---g~dle~nmhdgtirdl~fld~~~s~~ 152 (350)
T KOG0641|consen 76 QPPSVLCKRNKHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNAT---GHDLEFNMHDGTIRDLAFLDDPESGG 152 (350)
T ss_pred CCCeEEeeeccccCccEEEEEecCccCeEEecCCCceEEEEeccccccccc---CcceeeeecCCceeeeEEecCCCcCc
Confidence 343433333448999999999999999999999999999987765443221 122345669999999999753 5
Q ss_pred CeEEEEeC-CCeEEEEEccCCeeeEEeccccccCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeeC--C-----
Q 010362 276 EMLASGSQ-DGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRG--H----- 347 (512)
Q Consensus 276 ~~l~s~~~-dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~--~----- 347 (512)
.+|++++. |..|++-|..+|+....+. +|++.|.++- +-++-.+++|+.|.+|++||++-..++.++.. |
T Consensus 153 ~il~s~gagdc~iy~tdc~~g~~~~a~s-ghtghilaly-swn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~gle 230 (350)
T KOG0641|consen 153 AILASAGAGDCKIYITDCGRGQGFHALS-GHTGHILALY-SWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLE 230 (350)
T ss_pred eEEEecCCCcceEEEeecCCCCcceeec-CCcccEEEEE-EecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcc
Confidence 67777654 6788888999999998887 8999998873 33688999999999999999998888877642 2
Q ss_pred ccceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeecCCCCCCCCCCceeEEEEEcCCCCCeEEEEcCCCcEEEEecC
Q 010362 348 SSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQ 427 (512)
Q Consensus 348 ~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~~~~~ 427 (512)
.+.|.+++..|.|++|++|-.|....+||++.++.++.+.+ |...|.++.|+|.. .++++|+.|..|++-|++
T Consensus 231 ssavaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~p------hsadir~vrfsp~a-~yllt~syd~~ikltdlq 303 (350)
T KOG0641|consen 231 SSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHP------HSADIRCVRFSPGA-HYLLTCSYDMKIKLTDLQ 303 (350)
T ss_pred cceeEEEEECCCcceeeeccCCCceEEEEeeCCceeeeeCC------CccceeEEEeCCCc-eEEEEecccceEEEeecc
Confidence 35799999999999999999999999999999999988864 56799999999977 899999999999999999
Q ss_pred CeEEEEeeC--CcccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcC
Q 010362 428 GQVVKSFSS--GKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQ 471 (512)
Q Consensus 428 ~~~~~~~~~--~~~~~~~~~~~~~s~~g~~l~~g~~dg~i~iwd~~ 471 (512)
|.....+.. ...+...+..+.|+|..--+++.+.|.++.+|-+.
T Consensus 304 gdla~el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 304 GDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred cchhhcCceEEEEeccCceEEEEecCccceeeeccCcceEEEeccC
Confidence 764332221 12245567889999999999999999999999753
No 109
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.96 E-value=1.5e-26 Score=194.61 Aligned_cols=237 Identities=18% Similarity=0.265 Sum_probs=194.2
Q ss_pred cCcceeEEEEcCCCCeEEEEeCCCeEEEEEccCCeeeEEeccccccCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCcee
Q 010362 262 HDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLL 341 (512)
Q Consensus 262 h~~~v~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~ 341 (512)
....|..+.|+|.++.|+++++||++++||+........+. |..++.+++|.+ ...+++|+.||.|+.+|+.++...
T Consensus 12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~--~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~~~ 88 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFK--HGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGNED 88 (323)
T ss_pred ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhee--cCCceeeeeccC-CceEEEeccCceEEEEEecCCcce
Confidence 45789999999999999999999999999999887766664 899999999986 567999999999999999877554
Q ss_pred EEeeCCccceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeecCCCCCCCCCCceeEEEEEcCCCCCeEEEEcCCCcE
Q 010362 342 KEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSI 421 (512)
Q Consensus 342 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i 421 (512)
.+..|..+|.|+.+++....+++|+.|++|++||.+.......+.. ...|.++... .+.+++|+.+..+
T Consensus 89 -~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~-------~kkVy~~~v~---g~~LvVg~~~r~v 157 (323)
T KOG1036|consen 89 -QIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQ-------GKKVYCMDVS---GNRLVVGTSDRKV 157 (323)
T ss_pred -eeccCCCceEEEEeeccCCeEEEcccCccEEEEecccccccccccc-------CceEEEEecc---CCEEEEeecCceE
Confidence 4556999999999999888999999999999999997554444432 2367776664 3789999999999
Q ss_pred EEEecCCeEEEEeeCCcccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCC----eeEEeccccCC---------CeEE
Q 010362 422 YIMTLQGQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSG----KLEHLMKVHEK---------DVIG 488 (512)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~dg~i~iwd~~~~----~~~~~~~~h~~---------~v~~ 488 (512)
.+||++............-...+.++++-|++.-.++++-||.|.+=.+... +....++.|.. +|++
T Consensus 158 ~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNa 237 (323)
T KOG1036|consen 158 LIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNA 237 (323)
T ss_pred EEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEece
Confidence 9999995433332223333566889999999999999999999988777665 34455666643 6999
Q ss_pred EEEcCCCCeEEEEECCCeEEEecC
Q 010362 489 VTHHPHRNLLATYGEDCTMKLWKP 512 (512)
Q Consensus 489 v~~~p~~~~l~s~~~dg~i~iW~~ 512 (512)
++|||-...|||||.||.|.+||+
T Consensus 238 i~Fhp~~~tfaTgGsDG~V~~Wd~ 261 (323)
T KOG1036|consen 238 IAFHPIHGTFATGGSDGIVNIWDL 261 (323)
T ss_pred eEeccccceEEecCCCceEEEccC
Confidence 999999999999999999999996
No 110
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=6.8e-27 Score=212.93 Aligned_cols=289 Identities=18% Similarity=0.330 Sum_probs=228.2
Q ss_pred cCccccceEEEecCcCceEEEEECCCCCEEEEEeCCCeEEEEEcCCCeeeccccccccceeeccCcceeEEEEcCCCC--
Q 010362 199 MYPTTLSHTIKFGTKSHAECARFSPDGQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSE-- 276 (512)
Q Consensus 199 ~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~-- 276 (512)
.+|..+...++ ||++.|.|++..|.|.+||+|+.||+|+||.+.+|.+++.+. ..+.|.|++|+|.+.
T Consensus 387 PFPt~~~lvyr-GHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~---------~d~~I~~vaw~P~~~~~ 456 (733)
T KOG0650|consen 387 PFPTRCALVYR-GHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQ---------FDSEIRSVAWNPLSDLC 456 (733)
T ss_pred CCcceeeeeEe-ccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEe---------ecceeEEEEecCCCCce
Confidence 35555555555 999999999999999999999999999999999999998776 456899999999664
Q ss_pred eEEEEeCCCeEEEEEccCC------------------------------------e-eeEEeccccccCeEEEEEecCCC
Q 010362 277 MLASGSQDGKIKVWRIRSG------------------------------------Q-CLRRLERAHSEGVTSLVFSRDGS 319 (512)
Q Consensus 277 ~l~s~~~dg~i~vwd~~~~------------------------------------~-~~~~~~~~~~~~i~~~~~~~~~~ 319 (512)
.||++- +..+.|.+..-| + -++.. ..|...|..+.|+..|.
T Consensus 457 vLAvA~-~~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~-I~~~k~i~~vtWHrkGD 534 (733)
T KOG0650|consen 457 VLAVAV-GECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIV-IKHPKSIRQVTWHRKGD 534 (733)
T ss_pred eEEEEe-cCceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEE-EecCCccceeeeecCCc
Confidence 344433 223444332211 0 01111 25788899999999999
Q ss_pred EEEEEeCC---CcEEEEeCCCCceeEEeeCCccceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeecCCCCCCCCCC
Q 010362 320 QILSTSFD---STARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGD 396 (512)
Q Consensus 320 ~l~~~~~d---g~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 396 (512)
||++...+ ..|.|+++........|+...+.|.++.|+|...+|++++. ..|+|||+.....+..+.. ..
T Consensus 535 YlatV~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqelvKkL~t------g~ 607 (733)
T KOG0650|consen 535 YLATVMPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQELVKKLLT------GS 607 (733)
T ss_pred eEEEeccCCCcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEec-cceEEEehhHHHHHHHHhc------CC
Confidence 99988664 47899999877777777666778999999999999998886 4799999998776666553 34
Q ss_pred ceeEEEEEcCCCCCeEEEEcCCCcEEEEecC--CeEEEEeeCCcccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcC---
Q 010362 397 ASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQ--GQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQ--- 471 (512)
Q Consensus 397 ~~i~~~~~~~~~~~~l~~~~~~~~i~~~~~~--~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~dg~i~iwd~~--- 471 (512)
..+.+++++|.+ +.+++++.++.+..+|++ .++.+.+.. |...++.+++++.-.++++|+.||.+.||.-.
T Consensus 608 kwiS~msihp~G-Dnli~gs~d~k~~WfDldlsskPyk~lr~---H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~ 683 (733)
T KOG0650|consen 608 KWISSMSIHPNG-DNLILGSYDKKMCWFDLDLSSKPYKTLRL---HEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYN 683 (733)
T ss_pred eeeeeeeecCCC-CeEEEecCCCeeEEEEcccCcchhHHhhh---hhhhhhhhhhccccceeeeecCCCcEEEEeeeeeh
Confidence 688999999988 788899999999999998 334444433 45568899999999999999999999998632
Q ss_pred ---CC---eeEEeccccCCC----eEEEEEcCCCCeEEEEECCCeEEEe
Q 010362 472 ---SG---KLEHLMKVHEKD----VIGVTHHPHRNLLATYGEDCTMKLW 510 (512)
Q Consensus 472 ---~~---~~~~~~~~h~~~----v~~v~~~p~~~~l~s~~~dg~i~iW 510 (512)
.. -+++.+.+|... |..+.|||...+|+|+|.||+|++|
T Consensus 684 Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 684 DLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred hhhcCCceEeeeeccCceeecccceEeecccCCCceEEecCCCceEEee
Confidence 11 256778888765 8899999999999999999999998
No 111
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.95 E-value=5.6e-25 Score=196.63 Aligned_cols=305 Identities=18% Similarity=0.302 Sum_probs=238.0
Q ss_pred eccCcccccccccccCccccceEEEecCcCceEEEEECCCCCEEEEEeCCCeEEEEEcCCCeeeccccccccceeec-cC
Q 010362 185 LFRGTAAMKQDVEDMYPTTLSHTIKFGTKSHAECARFSPDGQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMM-HD 263 (512)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~-h~ 263 (512)
......+....+|++......-.++ ..+..|..+.|+|.+..++.....|.+..|+.+.+.+...... +.. ..
T Consensus 173 ~vD~s~~h~lSVWdWqk~~~~~~vk-~sne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~~~-----fek~ek 246 (626)
T KOG2106|consen 173 AVDDSNPHMLSVWDWQKKAKLGPVK-TSNEVVFLATFHPTDPNLIITCGKGHLYFWTLRGGSLVKRQGI-----FEKREK 246 (626)
T ss_pred EecCCCccccchhhchhhhccCcce-eccceEEEEEeccCCCcEEEEeCCceEEEEEccCCceEEEeec-----cccccc
Confidence 3334444456778877776666665 4556788899999766555555589999999988876654332 221 23
Q ss_pred cceeEEEEcCCCCeEEEEeCCCeEEEEEccCCeeeEEeccccccCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCc----
Q 010362 264 ETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGK---- 339 (512)
Q Consensus 264 ~~v~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~---- 339 (512)
..|.|++|.++|+ +++|..+|.|.||+..+.+..+... .|.+.|.+++...+|.++ +|+.|..|..||-.-.+
T Consensus 247 k~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~~~k~~~-aH~ggv~~L~~lr~Gtll-SGgKDRki~~Wd~~y~k~r~~ 323 (626)
T KOG2106|consen 247 KFVLCVTFLENGD-VITGDSGGNILIWSKGTNRISKQVH-AHDGGVFSLCMLRDGTLL-SGGKDRKIILWDDNYRKLRET 323 (626)
T ss_pred eEEEEEEEcCCCC-EEeecCCceEEEEeCCCceEEeEee-ecCCceEEEEEecCccEe-ecCccceEEeccccccccccc
Confidence 6799999999986 7899999999999998888777776 899999999999998654 59999999999832000
Q ss_pred ------------------------------------eeEEeeCCccceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCcee
Q 010362 340 ------------------------------------LLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCL 383 (512)
Q Consensus 340 ------------------------------------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 383 (512)
......+|......++.+|+.+.+++++.|+.+++|+ ..+..
T Consensus 324 elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~ 401 (626)
T KOG2106|consen 324 ELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLE 401 (626)
T ss_pred cCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCcee
Confidence 0011236777788899999999999999999999999 44444
Q ss_pred eecCCCCCCCCCCceeEEEEEcCCCCCeEEEEcCCCcEEEEecCCeEEEEeeCCcccCCcEEEEEECCCCCEEEEEeCCC
Q 010362 384 QTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDR 463 (512)
Q Consensus 384 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~dg 463 (512)
.+.. ...+..++.|+|.+ .+++|+..|...+.|.+.+........ +.+++++.++|+|.++|.|+.|+
T Consensus 402 wt~~-------~~d~~~~~~fhpsg--~va~Gt~~G~w~V~d~e~~~lv~~~~d---~~~ls~v~ysp~G~~lAvgs~d~ 469 (626)
T KOG2106|consen 402 WTKI-------IEDPAECADFHPSG--VVAVGTATGRWFVLDTETQDLVTIHTD---NEQLSVVRYSPDGAFLAVGSHDN 469 (626)
T ss_pred EEEE-------ecCceeEeeccCcc--eEEEeeccceEEEEecccceeEEEEec---CCceEEEEEcCCCCEEEEecCCC
Confidence 4433 24578899999997 999999999999999997655555443 56799999999999999999999
Q ss_pred eEEEEEcCCC-eeEEe-ccccCCCeEEEEEcCCCCeEEEEECCCeEEEecC
Q 010362 464 NLYCFSHQSG-KLEHL-MKVHEKDVIGVTHHPHRNLLATYGEDCTMKLWKP 512 (512)
Q Consensus 464 ~i~iwd~~~~-~~~~~-~~~h~~~v~~v~~~p~~~~l~s~~~dg~i~iW~~ 512 (512)
.|++|.+..+ ..... -+.|..+|+.+.|++|++++.+-+.|-.|..|+|
T Consensus 470 ~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~ 520 (626)
T KOG2106|consen 470 HIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWKP 520 (626)
T ss_pred eEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEEcc
Confidence 9999988654 33322 2344589999999999999999999999999976
No 112
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=1.8e-27 Score=218.78 Aligned_cols=281 Identities=19% Similarity=0.363 Sum_probs=224.2
Q ss_pred EEEEC-CCCCEEEEEeCCCeEEEEEcCCCeeeccccccccceeeccCcceeEEEEcCCCCeEEEEeCCCeEEEEEccCC-
Q 010362 218 CARFS-PDGQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSG- 295 (512)
Q Consensus 218 ~~~~s-~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~vwd~~~~- 295 (512)
.+..+ |++++|+|||.||.|++|++........ ......+..|...|+.++...+++.|+++|.|-+|++|+...+
T Consensus 29 ~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s--~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~ 106 (735)
T KOG0308|consen 29 ALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPS--TPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDN 106 (735)
T ss_pred hccccCCCCceEEecCCCceEEEeccccccCCcc--cchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCc
Confidence 34444 4677899999999999999865432111 1123355669999999999999999999999999999999877
Q ss_pred -eeeEEeccccccCeEEEEE-ecCCCEEEEEeCCCcEEEEeCCCCc--eeE--------Eee-CCccceeEEEEcCCCCE
Q 010362 296 -QCLRRLERAHSEGVTSLVF-SRDGSQILSTSFDSTARIHGLKSGK--LLK--------EFR-GHSSYVNDAIFTNDGSR 362 (512)
Q Consensus 296 -~~~~~~~~~~~~~i~~~~~-~~~~~~l~~~~~dg~v~i~d~~~~~--~~~--------~~~-~~~~~v~~~~~~~~~~~ 362 (512)
-+...+. .|...|.|+++ .++...+|+|+.|+.|.+||++++. .+. .+. ++..+|.+++.++.|..
T Consensus 107 ~~c~stir-~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ 185 (735)
T KOG0308|consen 107 TFCMSTIR-THKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTI 185 (735)
T ss_pred chhHhhhh-cccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceE
Confidence 5666665 89999999999 7888999999999999999999772 222 222 67888999999999999
Q ss_pred EEEEeCCCcEEEEeCCCCceeeecCCCCCCCCCCceeEEEEEcCCCCCeEEEEcCCCcEEEEecCCe-EEEEeeCCcccC
Q 010362 363 VVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQ-VVKSFSSGKREG 441 (512)
Q Consensus 363 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~ 441 (512)
+++|+..+.+++||.++++.+..+. +|...|..+..++++ ..+++++.||.|++||+..+ .+.++..+ .
T Consensus 186 ivsGgtek~lr~wDprt~~kimkLr------GHTdNVr~ll~~dDG-t~~ls~sSDgtIrlWdLgqQrCl~T~~vH---~ 255 (735)
T KOG0308|consen 186 IVSGGTEKDLRLWDPRTCKKIMKLR------GHTDNVRVLLVNDDG-TRLLSASSDGTIRLWDLGQQRCLATYIVH---K 255 (735)
T ss_pred EEecCcccceEEeccccccceeeee------ccccceEEEEEcCCC-CeEeecCCCceEEeeeccccceeeeEEec---c
Confidence 9999999999999999988766654 788999999999988 89999999999999999854 44444443 3
Q ss_pred CcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCeeEEeccccCCCeEEEEEcCCCCeEEEEECCCeEEEec
Q 010362 442 GDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPHRNLLATYGEDCTMKLWK 511 (512)
Q Consensus 442 ~~~~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~~~dg~i~iW~ 511 (512)
..+.++..+|+-..+++|+.||.|+.=|+++......+-....+|..+..+.+.+-+-+++.|+.|+-|.
T Consensus 256 e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlick~daPv~~l~~~~~~~~~WvtTtds~I~rW~ 325 (735)
T KOG0308|consen 256 EGVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLICKEDAPVLKLHLHEHDNSVWVTTTDSSIKRWK 325 (735)
T ss_pred CceEEEeeCCCcceEEecCCCCcEEecccCCchhheEeecCCCchhhhhhccccCCceeeeccccceecC
Confidence 4489999999999999999999999999988432222222455677777765444446677888998885
No 113
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=1e-26 Score=205.50 Aligned_cols=242 Identities=21% Similarity=0.345 Sum_probs=204.2
Q ss_pred eeccCcceeEEEEcCCCCeEEEEeCCCeEEEEEccCCeeeE-Eec----------------cccccCeEEEEEecCCCEE
Q 010362 259 FMMHDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLR-RLE----------------RAHSEGVTSLVFSRDGSQI 321 (512)
Q Consensus 259 ~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~-~~~----------------~~~~~~i~~~~~~~~~~~l 321 (512)
+..|.-+|.|++++|++.+.++++.+|+|.-|++.+|+... .+. ..|...+.+++.++||++|
T Consensus 138 ~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgkyl 217 (479)
T KOG0299|consen 138 IGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGKYL 217 (479)
T ss_pred eccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCcEE
Confidence 33499999999999999999999999999999998887431 111 1577789999999999999
Q ss_pred EEEeCCCcEEEEeCCCCceeEEeeCCccceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeecCCCCCCCCCCceeEE
Q 010362 322 LSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNS 401 (512)
Q Consensus 322 ~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~ 401 (512)
++|+.|..|.||+.++.+.+..+++|.+.|.+++|-.....+++++.|++|++|++.....+.++ .+|...|.+
T Consensus 218 atgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetl------yGHqd~v~~ 291 (479)
T KOG0299|consen 218 ATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETL------YGHQDGVLG 291 (479)
T ss_pred EecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHH------hCCccceee
Confidence 99999999999999999999999999999999999988889999999999999999876655554 478888998
Q ss_pred EEEcCCCCCeEEEEcCCCcEEEEecCCeEEEEeeCCcccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCeeEEecc-
Q 010362 402 VHLFPKNPDHIVVCNKTSSIYIMTLQGQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMK- 480 (512)
Q Consensus 402 ~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~~- 480 (512)
+...... ..+.++..|+++++|++.......+..+ .+.+-|++|-.+ ..+++|+.||.|.+|++...+++.+.+
T Consensus 292 IdaL~re-R~vtVGgrDrT~rlwKi~eesqlifrg~---~~sidcv~~In~-~HfvsGSdnG~IaLWs~~KKkplf~~~~ 366 (479)
T KOG0299|consen 292 IDALSRE-RCVTVGGRDRTVRLWKIPEESQLIFRGG---EGSIDCVAFIND-EHFVSGSDNGSIALWSLLKKKPLFTSRL 366 (479)
T ss_pred echhccc-ceEEeccccceeEEEeccccceeeeeCC---CCCeeeEEEecc-cceeeccCCceEEEeeecccCceeEeec
Confidence 8877665 6777788999999999975544444443 456778888644 467899999999999999998887654
Q ss_pred cc-----------CCCeEEEEEcCCCCeEEEEECCCeEEEec
Q 010362 481 VH-----------EKDVIGVTHHPHRNLLATYGEDCTMKLWK 511 (512)
Q Consensus 481 ~h-----------~~~v~~v~~~p~~~~l~s~~~dg~i~iW~ 511 (512)
+| ...|++++..|...++|+|+.+|.|++|.
T Consensus 367 AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~ 408 (479)
T KOG0299|consen 367 AHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWK 408 (479)
T ss_pred cccccCCccccccccceeeeEecccCceEEecCCCCceEEEE
Confidence 22 12688999999999999999999999996
No 114
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=1e-26 Score=205.91 Aligned_cols=252 Identities=24% Similarity=0.361 Sum_probs=209.5
Q ss_pred CEEEEEe-CCCeEEEEEcCCCeeeccccccccceeeccCcceeEEEEcCCCCeEEEEeCCCeEEEEEccCCeeeEEeccc
Q 010362 226 QFLVSCS-FDGFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERA 304 (512)
Q Consensus 226 ~~l~sg~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~ 304 (512)
.+++++. ....+.+|.+........ ..--.++|.|++-+|+|.+|+.|+..|.|++|.+.+|..+..+. .
T Consensus 51 ~yllsaq~~rp~l~vw~i~k~~~~~q--------~~v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~-a 121 (476)
T KOG0646|consen 51 EYLLSAQLKRPLLHVWEILKKDQVVQ--------YIVLPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLS-A 121 (476)
T ss_pred hheeeecccCccccccccCchhhhhh--------hcccccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHH-h
Confidence 4666654 445789998865443321 11156889999999999999999899999999999999998885 8
Q ss_pred cccCeEEEEEecCCCEEEEEeCCCcEEEEeCC---------CCceeEEeeCCccceeEEEEcCC--CCEEEEEeCCCcEE
Q 010362 305 HSEGVTSLVFSRDGSQILSTSFDSTARIHGLK---------SGKLLKEFRGHSSYVNDAIFTND--GSRVVTASSDCTVK 373 (512)
Q Consensus 305 ~~~~i~~~~~~~~~~~l~~~~~dg~v~i~d~~---------~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~ 373 (512)
|-..|+++.|+-||.+|++|+.||.|.+|++- +.++...+..|.-+|+++...+. ..+++|++.|.+++
T Consensus 122 HYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k 201 (476)
T KOG0646|consen 122 HYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIK 201 (476)
T ss_pred hccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEE
Confidence 99999999999999999999999999999762 34678889999999999998765 45899999999999
Q ss_pred EEeCCCCceeeecCCCCCCCCCCceeEEEEEcCCCCCeEEEEcCCCcEEEEecCCeE---E-------------EEeeCC
Q 010362 374 VWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQV---V-------------KSFSSG 437 (512)
Q Consensus 374 iwd~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~---~-------------~~~~~~ 437 (512)
+||+..+..+.++..+ .++.++++.|.. ..+++|+.+|.|.+.++.+.. . .....+
T Consensus 202 ~wdlS~g~LLlti~fp-------~si~av~lDpae-~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~G 273 (476)
T KOG0646|consen 202 LWDLSLGVLLLTITFP-------SSIKAVALDPAE-RVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVG 273 (476)
T ss_pred EEEeccceeeEEEecC-------CcceeEEEcccc-cEEEecCCcceEEeeehhcCCcccccccccccccccceeeeecc
Confidence 9999999988887654 478999999987 899999999999998875221 0 111122
Q ss_pred cccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCeeEEeccccCCCeEEEEEcCC
Q 010362 438 KREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPH 494 (512)
Q Consensus 438 ~~~~~~~~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~p~ 494 (512)
......|+|++++-||..|++|+.||.|+|||+.+.++++++....++|+.+.+.|-
T Consensus 274 h~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~i~~~ 330 (476)
T KOG0646|consen 274 HENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQTSKGPVTNLQINPL 330 (476)
T ss_pred ccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHhhhccccceeEeecc
Confidence 223358999999999999999999999999999999999999877899999999764
No 115
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.95 E-value=4.9e-25 Score=205.03 Aligned_cols=268 Identities=15% Similarity=0.190 Sum_probs=200.2
Q ss_pred CCEEEEEeCCCeEEEEEcCCCeeeccccccccceeeccCcceeEEEEcCCCCeE-EEEeCCCeEEEEEccCCeeeEEecc
Q 010362 225 GQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEML-ASGSQDGKIKVWRIRSGQCLRRLER 303 (512)
Q Consensus 225 ~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l-~s~~~dg~i~vwd~~~~~~~~~~~~ 303 (512)
++.+++++.||.|++||..+++....+. .+ ..+.+++|+|+++.+ ++++.++.|++||..+++....+.
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~~~~~~~~--------~~-~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~- 70 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATLEVTRTFP--------VG-QRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLP- 70 (300)
T ss_pred CcEEEEecCCCEEEEEECCCCceEEEEE--------CC-CCCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEecc-
Confidence 3578899999999999998887554332 23 346789999999876 566778999999999998877665
Q ss_pred ccccCeEEEEEecCCCEEEEE-eCCCcEEEEeCCCCceeEEeeCCccceeEEEEcCCCCEEEEEeCCC-cEEEEeCCCCc
Q 010362 304 AHSEGVTSLVFSRDGSQILST-SFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDC-TVKVWDLKSTD 381 (512)
Q Consensus 304 ~~~~~i~~~~~~~~~~~l~~~-~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-~i~iwd~~~~~ 381 (512)
.+ ..+..++|+|+++.++++ +.++.+++||+++++.+..+..+ ..+.+++|+|+++++++++.++ .+.+||..+++
T Consensus 71 ~~-~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~ 148 (300)
T TIGR03866 71 SG-PDPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVG-VEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYE 148 (300)
T ss_pred CC-CCccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCC-CCcceEEECCCCCEEEEEecCCCeEEEEeCCCCe
Confidence 23 335778999999977655 45899999999988877777633 3468899999999999888765 46778998876
Q ss_pred eeeecCCCCCCCCCCceeEEEEEcCCCCCeEEEEcCCCcEEEEecCCe-EEEEeeCCc----ccCCcEEEEEECCCCCEE
Q 010362 382 CLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQ-VVKSFSSGK----REGGDFVAACVSPKGEWI 456 (512)
Q Consensus 382 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~-~~~~~~~~~----~~~~~~~~~~~s~~g~~l 456 (512)
....... ......+.|+|++..+++++..++.+++||.... ....+.... ........++++|+|+++
T Consensus 149 ~~~~~~~-------~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~ 221 (300)
T TIGR03866 149 IVDNVLV-------DQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTA 221 (300)
T ss_pred EEEEEEc-------CCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEE
Confidence 6554321 1234678899998545566667999999999844 333332111 011223468899999986
Q ss_pred EEE-eCCCeEEEEEcCCCeeEEeccccCCCeEEEEEcCCCCeEEEE-ECCCeEEEecC
Q 010362 457 YCV-GEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPHRNLLATY-GEDCTMKLWKP 512 (512)
Q Consensus 457 ~~g-~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~-~~dg~i~iW~~ 512 (512)
+++ +.++.+.+||..+++.+..+. +...+.+++|+|++.+|+++ +.+|.|++||+
T Consensus 222 ~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~ 278 (300)
T TIGR03866 222 FVALGPANRVAVVDAKTYEVLDYLL-VGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDV 278 (300)
T ss_pred EEEcCCCCeEEEEECCCCcEEEEEE-eCCCcceEEECCCCCEEEEEcCCCCeEEEEEC
Confidence 654 457789999999988876653 45578999999999998876 56999999985
No 116
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.95 E-value=6.6e-27 Score=209.37 Aligned_cols=261 Identities=19% Similarity=0.244 Sum_probs=202.3
Q ss_pred ccccccceeeccCcceeEEEEcCCCCeEEEEeCCCeEEEEEccCC----eeeEEeccccccCeEEEEEecCCCEEEEEeC
Q 010362 251 LQYQADETFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSG----QCLRRLERAHSEGVTSLVFSRDGSQILSTSF 326 (512)
Q Consensus 251 ~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~vwd~~~~----~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 326 (512)
++......+.+|+..|.++++.|.|..|++|+.|.+|++||+... ...+.+.......|.++.|++.|..|++.+.
T Consensus 155 IP~shEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg 234 (641)
T KOG0772|consen 155 IPGSHEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSG 234 (641)
T ss_pred CCccceEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEec
Confidence 444444567789999999999999999999999999999998643 2334455456778999999999999999998
Q ss_pred CCcEEEEeCCCCceeE------------EeeCCccceeEEEEcCCC-CEEEEEeCCCcEEEEeCCCCceeeecCCCCCCC
Q 010362 327 DSTARIHGLKSGKLLK------------EFRGHSSYVNDAIFTNDG-SRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLR 393 (512)
Q Consensus 327 dg~v~i~d~~~~~~~~------------~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 393 (512)
....+++|-...+... ..++|...++|.+|+|.. ..++|++.||++++||+...+.......+....
T Consensus 235 ~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~ 314 (641)
T KOG0772|consen 235 SAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAG 314 (641)
T ss_pred CcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCC
Confidence 9999999964333222 235788899999999965 478999999999999998765433333333344
Q ss_pred CCCceeEEEEEcCCCCCeEEEEcCCCcEEEEecCCeE---EEEeeCCcccCCcEEEEEECCCCCEEEEEeCCCeEEEEEc
Q 010362 394 GGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQV---VKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSH 470 (512)
Q Consensus 394 ~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~---~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~dg~i~iwd~ 470 (512)
+...+++..+|+|++ ..++++..||.|.+|+..+.. ...+...+..+..|+++.||+||++|++-+.|+.+++||+
T Consensus 315 g~Rv~~tsC~~nrdg-~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDL 393 (641)
T KOG0772|consen 315 GKRVPVTSCAWNRDG-KLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDL 393 (641)
T ss_pred CcccCceeeecCCCc-chhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeec
Confidence 667788999999999 679999999999999987443 3333334444558999999999999999999999999999
Q ss_pred CCC-eeEEecccc--CCCeEEEEEcCCCCeEEEEE------CCCeEEEecC
Q 010362 471 QSG-KLEHLMKVH--EKDVIGVTHHPHRNLLATYG------EDCTMKLWKP 512 (512)
Q Consensus 471 ~~~-~~~~~~~~h--~~~v~~v~~~p~~~~l~s~~------~dg~i~iW~~ 512 (512)
+.. +++....+- .-+-+.++|||+.++|++|+ ..|++.+||+
T Consensus 394 rq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~ 444 (641)
T KOG0772|consen 394 RQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDR 444 (641)
T ss_pred cccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEec
Confidence 864 455444332 23566789999999999986 3567777764
No 117
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.95 E-value=2.7e-26 Score=202.72 Aligned_cols=297 Identities=19% Similarity=0.235 Sum_probs=223.0
Q ss_pred eEEEecCcCceEEEEECCCC--CEEEEEeCCCeEEEEEcCCCeeeccccccccceeeccCcceeEEEEcC-CCCeEEEEe
Q 010362 206 HTIKFGTKSHAECARFSPDG--QFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSR-DSEMLASGS 282 (512)
Q Consensus 206 ~~~~~~h~~~v~~~~~s~~~--~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~-~~~~l~s~~ 282 (512)
..++ -+.++|+|++|+|.. +++|+|..-|.|-+||+.+.+... .....+..|..+|.+|.|+| +...+++.|
T Consensus 180 ~v~k-v~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~----d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssS 254 (498)
T KOG4328|consen 180 NVAK-VTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDK----DGVYLFTPHSGPVSGLKFSPANTSQIYSSS 254 (498)
T ss_pred ceeE-ecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCcc----CceEEeccCCccccceEecCCChhheeeec
Confidence 3444 678999999999954 589999999999999996433221 22234566999999999999 456899999
Q ss_pred CCCeEEEEEccCCeeeEEecc-ccccCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCce-eEEeeCCccceeEEEEcCCC
Q 010362 283 QDGKIKVWRIRSGQCLRRLER-AHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKL-LKEFRGHSSYVNDAIFTNDG 360 (512)
Q Consensus 283 ~dg~i~vwd~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~-~~~~~~~~~~v~~~~~~~~~ 360 (512)
.||+|++-|++.+..-..+.. .....+.++.|+.+...++.+..=|...+||.+++.. ...+..|...|++++++|..
T Consensus 255 yDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~ 334 (498)
T KOG4328|consen 255 YDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVC 334 (498)
T ss_pred cCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCC
Confidence 999999999987653222221 2445678888888888888888778999999998765 66677788899999999954
Q ss_pred -CEEEEEeCCCcEEEEeCCCCceeeecCCCCCCCCCCceeEEEEEcCCCCCeEEEEcCCCcEEEEecC----C-eEEEEe
Q 010362 361 -SRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQ----G-QVVKSF 434 (512)
Q Consensus 361 -~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~~~~~----~-~~~~~~ 434 (512)
.+|+|++.|++.+|||++....... +......|...|.+..|+|.+.. +++.+.|..|++||.. . .....+
T Consensus 335 p~~laT~s~D~T~kIWD~R~l~~K~s--p~lst~~HrrsV~sAyFSPs~gt-l~TT~~D~~IRv~dss~~sa~~~p~~~I 411 (498)
T KOG4328|consen 335 PWFLATASLDQTAKIWDLRQLRGKAS--PFLSTLPHRRSVNSAYFSPSGGT-LLTTCQDNEIRVFDSSCISAKDEPLGTI 411 (498)
T ss_pred chheeecccCcceeeeehhhhcCCCC--cceecccccceeeeeEEcCCCCc-eEeeccCCceEEeecccccccCCcccee
Confidence 5689999999999999997543332 11223458889999999999966 9999999999999984 1 111222
Q ss_pred eCCcccCC--cEEEEEECCCCCEEEEEeCCCeEEEEEcCCCeeEEeccccCC-CeEE-EEEcCCCC-eEEEEECCCeEEE
Q 010362 435 SSGKREGG--DFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEK-DVIG-VTHHPHRN-LLATYGEDCTMKL 509 (512)
Q Consensus 435 ~~~~~~~~--~~~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~-~v~~-v~~~p~~~-~l~s~~~dg~i~i 509 (512)
......+. ......|.|+..+|++|..-..|-|+|-..++.+..+..... .|.+ ..|||-+. +++.++..|.|.|
T Consensus 412 ~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~v 491 (498)
T KOG4328|consen 412 PHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYV 491 (498)
T ss_pred eccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCccccccccceeecccccceeccCCccceEEE
Confidence 21111111 234678999999999999999999999999998877654433 4443 58999887 5555567888888
Q ss_pred e
Q 010362 510 W 510 (512)
Q Consensus 510 W 510 (512)
|
T Consensus 492 f 492 (498)
T KOG4328|consen 492 F 492 (498)
T ss_pred E
Confidence 8
No 118
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=1.4e-25 Score=188.41 Aligned_cols=251 Identities=18% Similarity=0.258 Sum_probs=195.5
Q ss_pred eccCcceeEEEEcCCCCeEEEEeCCCeEEEEEccCCe----eeEEeccccccCeEEEEEec--CCCEEEEEeCCCcEEEE
Q 010362 260 MMHDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQ----CLRRLERAHSEGVTSLVFSR--DGSQILSTSFDSTARIH 333 (512)
Q Consensus 260 ~~h~~~v~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~----~~~~~~~~~~~~i~~~~~~~--~~~~l~~~~~dg~v~i~ 333 (512)
.+|..-|.|+.|.+-|+.+|+|+.|++|+|||..++. +..... .|.+.|..+.|.+ -|+.+|+++.|+++.||
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wr-ah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iW 88 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWR-AHDGSIWRVVWAHPEFGQVVATCSYDRTVSIW 88 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEE-ecCCcEEEEEecCccccceEEEEecCCceeee
Confidence 3588999999999999999999999999999975443 444454 7999999999976 48999999999999999
Q ss_pred eCC--C-------CceeEEeeCCccceeEEEEcC--CCCEEEEEeCCCcEEEEeCCCCceeeecCCC-------CCCCCC
Q 010362 334 GLK--S-------GKLLKEFRGHSSYVNDAIFTN--DGSRVVTASSDCTVKVWDLKSTDCLQTFKPP-------PPLRGG 395 (512)
Q Consensus 334 d~~--~-------~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-------~~~~~~ 395 (512)
.-. + .....++....+.|+++.|.| -|-.+++++.||.+|||+.-....+...... .+...+
T Consensus 89 EE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~ 168 (361)
T KOG2445|consen 89 EEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKN 168 (361)
T ss_pred eecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccc
Confidence 751 1 122345566678899999999 4668999999999999987654333322221 122356
Q ss_pred CceeEEEEEcCCC--CCeEEEEcCC-----CcEEEEecC--CeEEEEeeCCcccCCcEEEEEECCC----CCEEEEEeCC
Q 010362 396 DASVNSVHLFPKN--PDHIVVCNKT-----SSIYIMTLQ--GQVVKSFSSGKREGGDFVAACVSPK----GEWIYCVGED 462 (512)
Q Consensus 396 ~~~i~~~~~~~~~--~~~l~~~~~~-----~~i~~~~~~--~~~~~~~~~~~~~~~~~~~~~~s~~----g~~l~~g~~d 462 (512)
..+..|+.|+|.. +.++++|+.+ +.++||... ++..........++.+|+.++|.|+ -..|++++.|
T Consensus 169 ~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kD 248 (361)
T KOG2445|consen 169 KQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKD 248 (361)
T ss_pred cCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecC
Confidence 6788899999763 4577887766 467788776 4455555555567889999999996 3578999999
Q ss_pred CeEEEEEcCCC--------------------eeEEeccccCCCeEEEEEcCCCCeEEEEECCCeEEEecC
Q 010362 463 RNLYCFSHQSG--------------------KLEHLMKVHEKDVIGVTHHPHRNLLATYGEDCTMKLWKP 512 (512)
Q Consensus 463 g~i~iwd~~~~--------------------~~~~~~~~h~~~v~~v~~~p~~~~l~s~~~dg~i~iW~~ 512 (512)
| |+||.+... +.+..+..|.+.|..+.|+-.|..|+|.|+||.||+|++
T Consensus 249 g-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWka 317 (361)
T KOG2445|consen 249 G-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKA 317 (361)
T ss_pred c-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhh
Confidence 9 999998731 234557789999999999999999999999999999974
No 119
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.95 E-value=1.1e-26 Score=195.15 Aligned_cols=254 Identities=18% Similarity=0.303 Sum_probs=202.3
Q ss_pred ecCcCceEEEEECCCCCEEEEEeCCCeEEEEEcCCCeeeccccccccceeeccCcceeEEEEcCCCCeEEEEeCCCeEEE
Q 010362 210 FGTKSHAECARFSPDGQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQDGKIKV 289 (512)
Q Consensus 210 ~~h~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~v 289 (512)
+.|.+.|+++.|+|....|++|+.|++|++||+......+.++. + ....+|.++.|+|.|.+|+.|....++++
T Consensus 169 YDH~devn~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~-----~-qd~~~vrsiSfHPsGefllvgTdHp~~rl 242 (430)
T KOG0640|consen 169 YDHVDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKRAFKV-----F-QDTEPVRSISFHPSGEFLLVGTDHPTLRL 242 (430)
T ss_pred hhccCcccceeecchhheEEeccCCCeEEEEecccHHHHHHHHH-----h-hccceeeeEeecCCCceEEEecCCCceeE
Confidence 59999999999999999999999999999999987655544332 1 15678999999999999999999999999
Q ss_pred EEccCCeeeEEec--cccccCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEee-CCc-cceeEEEEcCCCCEEEE
Q 010362 290 WRIRSGQCLRRLE--RAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFR-GHS-SYVNDAIFTNDGSRVVT 365 (512)
Q Consensus 290 wd~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~-~~~-~~v~~~~~~~~~~~l~~ 365 (512)
||+.+-++...-. ..|++.|+++.+++.+++.++|+.||.|++||--+++++.++. .|. ..|.+..|..+++++++
T Consensus 243 Ydv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLs 322 (430)
T KOG0640|consen 243 YDVNTYQCFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILS 322 (430)
T ss_pred EeccceeEeeecCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEee
Confidence 9999988765543 3688999999999999999999999999999998999998885 354 47999999999999999
Q ss_pred EeCCCcEEEEeCCCCceeeecCCCCCCCCCCceeEEEEEcCCCCCeEEEEcCCCcEEEEecCCeEEEEeeCCcccCCcEE
Q 010362 366 ASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQVVKSFSSGKREGGDFV 445 (512)
Q Consensus 366 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 445 (512)
.+.|..+++|.+.+++++..+...... +...--+...|+......+.---..+.+.-||.+......+.. ..|++.+.
T Consensus 323 SG~DS~vkLWEi~t~R~l~~YtGAg~t-grq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~s-lgHn~a~R 400 (430)
T KOG0640|consen 323 SGKDSTVKLWEISTGRMLKEYTGAGTT-GRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLS-LGHNGAVR 400 (430)
T ss_pred cCCcceeeeeeecCCceEEEEecCCcc-cchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcc-cCCCCCce
Confidence 999999999999999998887643211 1111122233443332333334456788999998543332222 23577899
Q ss_pred EEEECCCCCEEEEEeCCCeEEEEEcC
Q 010362 446 AACVSPKGEWIYCVGEDRNLYCFSHQ 471 (512)
Q Consensus 446 ~~~~s~~g~~l~~g~~dg~i~iwd~~ 471 (512)
.+.-||.+.-+++++.|-.+++|-.+
T Consensus 401 ~i~HSP~~p~FmTcsdD~raRFWyrr 426 (430)
T KOG0640|consen 401 WIVHSPVEPAFMTCSDDFRARFWYRR 426 (430)
T ss_pred EEEeCCCCCceeeecccceeeeeeec
Confidence 99999999999999999999999654
No 120
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=1.1e-26 Score=213.66 Aligned_cols=311 Identities=21% Similarity=0.363 Sum_probs=239.0
Q ss_pred eeccCcccccccccccC-----ccc-cceEEEecCcCceEEEEECCCCCEEEEEeCCCeEEEEEcCCCeeeccccccccc
Q 010362 184 DLFRGTAAMKQDVEDMY-----PTT-LSHTIKFGTKSHAECARFSPDGQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADE 257 (512)
Q Consensus 184 ~~~~~~~~~~~~~~~~~-----~~~-~~~~~~~~h~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~ 257 (512)
.++.+..++....|... |.. ...+++ .|.+.|..+....+|+.|+++|.|-+|++|+...+.. .+..
T Consensus 39 yLfTgGRDg~i~~W~~~~d~~~~s~~~~asme-~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~------~c~s 111 (735)
T KOG0308|consen 39 YLFTGGRDGIIRLWSVTQDSNEPSTPYIASME-HHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNT------FCMS 111 (735)
T ss_pred eEEecCCCceEEEeccccccCCcccchhhhhh-hhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcc------hhHh
Confidence 35555555554444322 222 355565 8999999999999999999999999999999876631 1223
Q ss_pred eeeccCcceeEEEE-cCCCCeEEEEeCCCeEEEEEccCCe--eeEE--------eccccccCeEEEEEecCCCEEEEEeC
Q 010362 258 TFMMHDETVLCIEF-SRDSEMLASGSQDGKIKVWRIRSGQ--CLRR--------LERAHSEGVTSLVFSRDGSQILSTSF 326 (512)
Q Consensus 258 ~~~~h~~~v~~l~~-s~~~~~l~s~~~dg~i~vwd~~~~~--~~~~--------~~~~~~~~i~~~~~~~~~~~l~~~~~ 326 (512)
++..|...|.|+++ .++...+|+||-|+.|.+||+.++. .+.+ +..++..+|.+++.+++|..|++|+.
T Consensus 112 tir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgt 191 (735)
T KOG0308|consen 112 TIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGT 191 (735)
T ss_pred hhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCc
Confidence 45569999999999 8889999999999999999999873 2222 22367788999999999999999999
Q ss_pred CCcEEEEeCCCCceeEEeeCCccceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeecCCCCCCCCCCceeEEEEEcC
Q 010362 327 DSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFP 406 (512)
Q Consensus 327 dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 406 (512)
.+.+++||.++++.+..+++|...|..+..++||..+++++.||+|++||+...+++.++. .|...+.++..+|
T Consensus 192 ek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~------vH~e~VWaL~~~~ 265 (735)
T KOG0308|consen 192 EKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYI------VHKEGVWALQSSP 265 (735)
T ss_pred ccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEE------eccCceEEEeeCC
Confidence 9999999999999999999999999999999999999999999999999999999998876 4556799999997
Q ss_pred CCCCeEEEEcCCCcEEEEecCCeE-EEEeeCCcccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCe-------eEEe
Q 010362 407 KNPDHIVVCNKTSSIYIMTLQGQV-VKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGK-------LEHL 478 (512)
Q Consensus 407 ~~~~~l~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~-------~~~~ 478 (512)
.- ..+.+|+.++.|+.-|++... ...+.. ...++..+..+.+.+-+.+++.|+.|.-|...-.. +...
T Consensus 266 sf-~~vYsG~rd~~i~~Tdl~n~~~~tlick---~daPv~~l~~~~~~~~~WvtTtds~I~rW~~~~~~~l~~s~~~~~~ 341 (735)
T KOG0308|consen 266 SF-THVYSGGRDGNIYRTDLRNPAKSTLICK---EDAPVLKLHLHEHDNSVWVTTTDSSIKRWKLEPDIALSVSGDLDFF 341 (735)
T ss_pred Cc-ceEEecCCCCcEEecccCCchhheEeec---CCCchhhhhhccccCCceeeeccccceecCCccccccccCCCCCcc
Confidence 66 899999999999999998642 222222 23456666666555556788889999999654211 1100
Q ss_pred cc---c--------c------CCCeEEEEEcCCCCeEEEEECCCeEEEec
Q 010362 479 MK---V--------H------EKDVIGVTHHPHRNLLATYGEDCTMKLWK 511 (512)
Q Consensus 479 ~~---~--------h------~~~v~~v~~~p~~~~l~s~~~dg~i~iW~ 511 (512)
.. . | ...+..-+.-.|.+.++|=...|.+.+||
T Consensus 342 ~T~~~~~~~~~~~tp~~vi~Gg~ai~k~~mL~dkRhVlTkDa~gnv~lwD 391 (735)
T KOG0308|consen 342 STDSNNHSCDLTNTPDSVIPGGAAIKKHAMLNDKRHVLTKDAKGNVALWD 391 (735)
T ss_pred cccCCCccccccCCCceeccCchhhhhhhhhcCcceEeeecCCCCEEEEE
Confidence 00 0 0 11233334445778999999999999998
No 121
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=2.6e-26 Score=193.64 Aligned_cols=271 Identities=19% Similarity=0.308 Sum_probs=223.1
Q ss_pred cccccccccCccccceEEEecCcCceEEEEECCCCCEEEEEeCCCeEEEEEcC----CCe------------------ee
Q 010362 191 AMKQDVEDMYPTTLSHTIKFGTKSHAECARFSPDGQFLVSCSFDGFIEVWDYL----SGK------------------LK 248 (512)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~----~~~------------------~~ 248 (512)
+....+|......+..+.. ||.+.|.|++|++.+.++++++.|++..||... ..+ ..
T Consensus 169 DhTA~iWs~Esg~CL~~Y~-GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~ 247 (481)
T KOG0300|consen 169 DHTARIWSLESGACLATYT-GHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHN 247 (481)
T ss_pred ccceeEEeeccccceeeec-ccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccc
Confidence 3456788888888888886 999999999999999999999999999999721 000 00
Q ss_pred c-----------cccccccceeeccCcceeEEEEcCCCCeEEEEeCCCeEEEEEccCCeeeEEeccccccCeEEEEEecC
Q 010362 249 K-----------DLQYQADETFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRD 317 (512)
Q Consensus 249 ~-----------~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~ 317 (512)
. .+ -.|...+.+|...|.+..|-..|+.+++++.|.+..+||+++|+.+..+. +|....+.++-+|.
T Consensus 248 ~d~d~~~~sD~~ti-RvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~Lt-GHd~ELtHcstHpt 325 (481)
T KOG0300|consen 248 RDTDSSEKSDGHTI-RVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILT-GHDSELTHCSTHPT 325 (481)
T ss_pred cccccccccCCcee-eeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccCceecccc-CcchhccccccCCc
Confidence 0 00 01234678899999999999999999999999999999999999999987 99999999999999
Q ss_pred CCEEEEEeCCCcEEEEeCCCC-ceeEEeeCCccceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCc-eeeecCCCCCCCCC
Q 010362 318 GSQILSTSFDSTARIHGLKSG-KLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTD-CLQTFKPPPPLRGG 395 (512)
Q Consensus 318 ~~~l~~~~~dg~v~i~d~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~ 395 (512)
.+++++++.|.+.++||.+.. ..+..|++|...|++..|..+. .+++|+.|.+|++||+++.+ ++.++. .
T Consensus 326 QrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd-~vVSgSDDrTvKvWdLrNMRsplATIR-------t 397 (481)
T KOG0300|consen 326 QRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDD-RVVSGSDDRTVKVWDLRNMRSPLATIR-------T 397 (481)
T ss_pred ceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecCC-ceeecCCCceEEEeeeccccCcceeee-------c
Confidence 999999999999999999854 4567899999999999998765 59999999999999999754 333433 3
Q ss_pred CceeEEEEEcCCCCCeEEEEcCCCcEEEEecCCeEEEEee--CCcccCCcEEEEEECCCC--CEEEEEeCCCeEEEEEcC
Q 010362 396 DASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQVVKSFS--SGKREGGDFVAACVSPKG--EWIYCVGEDRNLYCFSHQ 471 (512)
Q Consensus 396 ~~~i~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~--~~~~~~~~~~~~~~s~~g--~~l~~g~~dg~i~iwd~~ 471 (512)
+.+++.++++..+ .+++.-..+..+++||++|..+..+. ....|...+.|++|..+. .-|++++.|..+.-|.+.
T Consensus 398 dS~~NRvavs~g~-~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in 476 (481)
T KOG0300|consen 398 DSPANRVAVSKGH-PIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKIN 476 (481)
T ss_pred CCccceeEeecCC-ceEEeccCCceEEEEecCCCccccCCcccccccceeeeeeeccccCcccccccccccceeeeeEec
Confidence 5678888887755 78888889999999999998887766 334456678899996442 457889999999999886
Q ss_pred CC
Q 010362 472 SG 473 (512)
Q Consensus 472 ~~ 473 (512)
..
T Consensus 477 ~p 478 (481)
T KOG0300|consen 477 TP 478 (481)
T ss_pred cc
Confidence 53
No 122
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=7.6e-26 Score=200.48 Aligned_cols=269 Identities=19% Similarity=0.245 Sum_probs=207.9
Q ss_pred EeCC-CeEEEEEcCCCeeeccccccccceeeccCcceeEEEEcCCCCeEEEEeC-CCeEEEEEccCCeeeEEeccccccC
Q 010362 231 CSFD-GFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQ-DGKIKVWRIRSGQCLRRLERAHSEG 308 (512)
Q Consensus 231 g~~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~-dg~i~vwd~~~~~~~~~~~~~~~~~ 308 (512)
++.| .++.+||+.+|.....+... ....+|. +-+. .+.+++++.. ...+.+|.+.......... --+++
T Consensus 13 sS~d~~~~~~~dl~TGt~~~~ykg~--~~a~~~s----l~~l--~~~yllsaq~~rp~l~vw~i~k~~~~~q~~-v~Pg~ 83 (476)
T KOG0646|consen 13 SSFDPINCIVWDLRTGTSLLQYKGS--YLAQAAS----LTAL--NNEYLLSAQLKRPLLHVWEILKKDQVVQYI-VLPGP 83 (476)
T ss_pred cCCCCcceeEEecCCCceeEEecCc--ccccchh----hhhh--chhheeeecccCccccccccCchhhhhhhc-ccccc
Confidence 3334 45999999998766544321 0111111 1111 2346666643 4579999987655444222 46788
Q ss_pred eEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeeCCccceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCc---eeee
Q 010362 309 VTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTD---CLQT 385 (512)
Q Consensus 309 i~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~---~~~~ 385 (512)
|.+++-+|+|.+++.|+..|.+++|.+.+|..+..+.+|-..|+|+.|+.||.+|++|+.||.|.+|++.+.- ....
T Consensus 84 v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~ 163 (476)
T KOG0646|consen 84 VHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHS 163 (476)
T ss_pred eeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCC
Confidence 9999999999999999899999999999999999999999999999999999999999999999999875421 1112
Q ss_pred cCCCCCCCCCCceeEEEEEcCC-CCCeEEEEcCCCcEEEEecC-CeEEEEeeCCcccCCcEEEEEECCCCCEEEEEeCCC
Q 010362 386 FKPPPPLRGGDASVNSVHLFPK-NPDHIVVCNKTSSIYIMTLQ-GQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDR 463 (512)
Q Consensus 386 ~~~~~~~~~~~~~i~~~~~~~~-~~~~l~~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~dg 463 (512)
..+......|.-+|+.+...+. ....+++++.|.++++||+. +..+..+.. ...+.+++++|-++.+++|+++|
T Consensus 164 ~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~f----p~si~av~lDpae~~~yiGt~~G 239 (476)
T KOG0646|consen 164 VKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITF----PSSIKAVALDPAERVVYIGTEEG 239 (476)
T ss_pred ccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEec----CCcceeEEEcccccEEEecCCcc
Confidence 3333445678899999998877 34689999999999999999 545555444 34588999999999999999999
Q ss_pred eEEEEEcCCC----------------eeEEeccccCC--CeEEEEEcCCCCeEEEEECCCeEEEecC
Q 010362 464 NLYCFSHQSG----------------KLEHLMKVHEK--DVIGVTHHPHRNLLATYGEDCTMKLWKP 512 (512)
Q Consensus 464 ~i~iwd~~~~----------------~~~~~~~~h~~--~v~~v~~~p~~~~l~s~~~dg~i~iW~~ 512 (512)
.|.+.++... ..+..+.+|.+ .|+|++.+-||.+|++|+.||.|+|||+
T Consensus 240 ~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi 306 (476)
T KOG0646|consen 240 KIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDI 306 (476)
T ss_pred eEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEec
Confidence 9999887532 24456778987 9999999999999999999999999995
No 123
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=8.1e-25 Score=202.52 Aligned_cols=282 Identities=17% Similarity=0.256 Sum_probs=227.0
Q ss_pred CcCceEEEEECCCCCEEEEEeCCCeEEEEEcCCCeeeccccccccceeec-cCcceeEEEEcCCCCeEEEEeCCCeEEEE
Q 010362 212 TKSHAECARFSPDGQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMM-HDETVLCIEFSRDSEMLASGSQDGKIKVW 290 (512)
Q Consensus 212 h~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~-h~~~v~~l~~s~~~~~l~s~~~dg~i~vw 290 (512)
..+.|.|+||+.+.+.||.+-.||.|.||++..+-... ..+.+ .+..|-+++|++ +..|.+.+.+|.|.-|
T Consensus 24 ~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~-------~vi~g~~drsIE~L~W~e-~~RLFS~g~sg~i~Ew 95 (691)
T KOG2048|consen 24 KPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLE-------PVIHGPEDRSIESLAWAE-GGRLFSSGLSGSITEW 95 (691)
T ss_pred eccceEEEEEeccCCceeeeccCCcEEEEccCCCceee-------EEEecCCCCceeeEEEcc-CCeEEeecCCceEEEE
Confidence 34679999999999999999999999999998754332 22333 456799999995 5568888899999999
Q ss_pred EccCCeeeEEeccccccCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeE--EeeCCccceeEEEEcCCCCEEEEEeC
Q 010362 291 RIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLK--EFRGHSSYVNDAIFTNDGSRVVTASS 368 (512)
Q Consensus 291 d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~ 368 (512)
|+.+++....+. ...+.|.+++.+|.+..++.|+.||.++.++...++... .+....+.|.+++|+|++..+++|+.
T Consensus 96 Dl~~lk~~~~~d-~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~ 174 (691)
T KOG2048|consen 96 DLHTLKQKYNID-SNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSI 174 (691)
T ss_pred ecccCceeEEec-CCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEeccc
Confidence 999999999887 788999999999999999999999988888887666543 34446789999999999999999999
Q ss_pred CCcEEEEeCCCCceeeecCC--CCCCCCCCceeEEEEEcCCCCCeEEEEcCCCcEEEEecCC-eEEEEeeCCcccCCcEE
Q 010362 369 DCTVKVWDLKSTDCLQTFKP--PPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQG-QVVKSFSSGKREGGDFV 445 (512)
Q Consensus 369 dg~i~iwd~~~~~~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~ 445 (512)
||.|++||..++........ .....+...-|.++.+..+ ..+++|+..|.|.+||... .....+.. +...+.
T Consensus 175 Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd--~tI~sgDS~G~V~FWd~~~gTLiqS~~~---h~adVl 249 (691)
T KOG2048|consen 175 DGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRD--STIASGDSAGTVTFWDSIFGTLIQSHSC---HDADVL 249 (691)
T ss_pred CceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeec--CcEEEecCCceEEEEcccCcchhhhhhh---hhccee
Confidence 99999999999877662221 1111224556788887743 7999999999999999984 44444333 456799
Q ss_pred EEEECCCCCEEEEEeCCCeEEEEEcCCCee----EEeccccCCCeEEEEEcCCCCeEEEEECCCeEEE
Q 010362 446 AACVSPKGEWIYCVGEDRNLYCFSHQSGKL----EHLMKVHEKDVIGVTHHPHRNLLATYGEDCTMKL 509 (512)
Q Consensus 446 ~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~----~~~~~~h~~~v~~v~~~p~~~~l~s~~~dg~i~i 509 (512)
+++..++++++++++.|+.|.-|...+++. ......|...|.+++..++ .+++||.|+++.+
T Consensus 250 ~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i 315 (691)
T KOG2048|consen 250 ALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN--ALISGGRDFTLAI 315 (691)
T ss_pred EEEEcCCCCeEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecc--eEEecceeeEEEE
Confidence 999999999999999999999998876643 2233468888999999876 8999999998865
No 124
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=4.4e-27 Score=201.67 Aligned_cols=239 Identities=20% Similarity=0.353 Sum_probs=203.7
Q ss_pred ceeeccCcceeEEEEcCCC-CeEEEEeCCCeEEEEEccCCeeeEEeccccccCeEEEEEecCCCEEEEEeCCCcEEEEeC
Q 010362 257 ETFMMHDETVLCIEFSRDS-EMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGL 335 (512)
Q Consensus 257 ~~~~~h~~~v~~l~~s~~~-~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~i~d~ 335 (512)
..+.||...|.|++=+|.. ..+++|+.||.|++||+.+..+..++. .|.+.|..+++.. ..+++++.|.+|+.|-+
T Consensus 60 ~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~-AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~ 136 (433)
T KOG0268|consen 60 GSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFK-AHEGLVRGICVTQ--TSFFTVGDDKTVKQWKI 136 (433)
T ss_pred hhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheee-cccCceeeEEecc--cceEEecCCcceeeeec
Confidence 3556799999999999977 789999999999999999999999997 8999999999986 56888999999999998
Q ss_pred CCCceeEEeeCCccceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeecCCCCCCCCCCceeEEEEEcCCCCCeEEEE
Q 010362 336 KSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVC 415 (512)
Q Consensus 336 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~ 415 (512)
.. .++.++.+. +.+..+.-+..++.++|+|.+ |.|||.....++..+.. ....+.++.++|....+|++|
T Consensus 137 ~~-~p~~tilg~-s~~~gIdh~~~~~~FaTcGe~--i~IWD~~R~~Pv~smsw------G~Dti~svkfNpvETsILas~ 206 (433)
T KOG0268|consen 137 DG-PPLHTILGK-SVYLGIDHHRKNSVFATCGEQ--IDIWDEQRDNPVSSMSW------GADSISSVKFNPVETSILASC 206 (433)
T ss_pred cC-Ccceeeecc-ccccccccccccccccccCce--eeecccccCCccceeec------CCCceeEEecCCCcchheeee
Confidence 54 567777643 447777777777888988865 99999987777776653 345789999999999999999
Q ss_pred cCCCcEEEEecC-CeEEEEeeCCcccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCC-eeEEeccccCCCeEEEEEcC
Q 010362 416 NKTSSIYIMTLQ-GQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSG-KLEHLMKVHEKDVIGVTHHP 493 (512)
Q Consensus 416 ~~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~dg~i~iwd~~~~-~~~~~~~~h~~~v~~v~~~p 493 (512)
..|+.|.+||++ +.++....... ..+.+||+|.+-.+++|++|..++.||++.- .++....+|.+.|.+|.|+|
T Consensus 207 ~sDrsIvLyD~R~~~Pl~KVi~~m----RTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsp 282 (433)
T KOG0268|consen 207 ASDRSIVLYDLRQASPLKKVILTM----RTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSP 282 (433)
T ss_pred ccCCceEEEecccCCccceeeeec----cccceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCC
Confidence 999999999999 55655554433 2467999998888899999999999999874 57788899999999999999
Q ss_pred CCCeEEEEECCCeEEEecC
Q 010362 494 HRNLLATYGEDCTMKLWKP 512 (512)
Q Consensus 494 ~~~~l~s~~~dg~i~iW~~ 512 (512)
.|+-++|||.|.+|+||..
T Consensus 283 tG~EfvsgsyDksIRIf~~ 301 (433)
T KOG0268|consen 283 TGQEFVSGSYDKSIRIFPV 301 (433)
T ss_pred CcchhccccccceEEEeec
Confidence 9999999999999999863
No 125
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.95 E-value=8.4e-26 Score=213.52 Aligned_cols=320 Identities=19% Similarity=0.266 Sum_probs=258.6
Q ss_pred CCCCCCeeeeccCcccccccccccCccccceEEEecCcCceEEEEECCCCCEEEEEeCCCeEEEEEcCCCeeeccccccc
Q 010362 176 LLPPGTQFDLFRGTAAMKQDVEDMYPTTLSHTIKFGTKSHAECARFSPDGQFLVSCSFDGFIEVWDYLSGKLKKDLQYQA 255 (512)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~ 255 (512)
.|..++...+..+...+...+||.........++..|.+.|....|-|....+++++.|+.+++|=.+++.-..+ .
T Consensus 251 SFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR----~ 326 (910)
T KOG1539|consen 251 SFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPR----L 326 (910)
T ss_pred EeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcch----h
Confidence 355555666666777778889999999999999999999999999999999999999999999997765543221 1
Q ss_pred cceeeccCcceeEEEEc-CCCCeEEEEeCCCeEEEEEccCC-------e--------eeE--------------------
Q 010362 256 DETFMMHDETVLCIEFS-RDSEMLASGSQDGKIKVWRIRSG-------Q--------CLR-------------------- 299 (512)
Q Consensus 256 ~~~~~~h~~~v~~l~~s-~~~~~l~s~~~dg~i~vwd~~~~-------~--------~~~-------------------- 299 (512)
.+.-.||..+..|++|. .+|..+.+++.|++.+.+++... + .+.
T Consensus 327 LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~ 406 (910)
T KOG1539|consen 327 LRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENA 406 (910)
T ss_pred eeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccc
Confidence 22345799999999998 57888999999988877765310 0 000
Q ss_pred -------------------------------Eecc----ccccCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEe
Q 010362 300 -------------------------------RLER----AHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEF 344 (512)
Q Consensus 300 -------------------------------~~~~----~~~~~i~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~ 344 (512)
.+.. .....+++++.++.|+..+.|+..|.|-+|++.+|-...++
T Consensus 407 RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf 486 (910)
T KOG1539|consen 407 REKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSF 486 (910)
T ss_pred hhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeeccc
Confidence 0000 12256889999999999999999999999999999888888
Q ss_pred ---eCCccceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeecCCCCCCCCCCceeEEEEEcCCCCCeEEEEcCCCcE
Q 010362 345 ---RGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSI 421 (512)
Q Consensus 345 ---~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i 421 (512)
..|..+|++++...-++.+++++.+|.+++||.........+.. ..++..+..+... .+++++..+-.|
T Consensus 487 ~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l-------~~~~~~iv~hr~s-~l~a~~~ddf~I 558 (910)
T KOG1539|consen 487 GDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRL-------GSSITGIVYHRVS-DLLAIALDDFSI 558 (910)
T ss_pred ccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeecc-------CCCcceeeeeehh-hhhhhhcCceeE
Confidence 57999999999999999999999999999999998876666543 3456666666555 788999999999
Q ss_pred EEEecCCeEEEEeeCCcccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCeeEEeccccCCCeEEEEEcCCCCeEEEE
Q 010362 422 YIMTLQGQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPHRNLLATY 501 (512)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~ 501 (512)
.++|.....+.+...+ ++..++.++|||||++|++++.|++|++||+.++.++-.+. -..+.+++.|+|+|.+|||+
T Consensus 559 ~vvD~~t~kvvR~f~g--h~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~-vd~~~~sls~SPngD~LAT~ 635 (910)
T KOG1539|consen 559 RVVDVVTRKVVREFWG--HGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLL-VDSPCTSLSFSPNGDFLATV 635 (910)
T ss_pred EEEEchhhhhhHHhhc--cccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEe-cCCcceeeEECCCCCEEEEE
Confidence 9999985544433332 46779999999999999999999999999999999998775 46788999999999999999
Q ss_pred ECC-CeEEEe
Q 010362 502 GED-CTMKLW 510 (512)
Q Consensus 502 ~~d-g~i~iW 510 (512)
..| .-|++|
T Consensus 636 Hvd~~gIylW 645 (910)
T KOG1539|consen 636 HVDQNGIYLW 645 (910)
T ss_pred EecCceEEEE
Confidence 988 568888
No 126
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=3.5e-26 Score=185.92 Aligned_cols=248 Identities=22% Similarity=0.277 Sum_probs=197.1
Q ss_pred ccCcceeEEEEcCCCCeEEEEeCCCeEEEEEccCCe---eeEEeccccccCeEEEEEec--CCCEEEEEeCCCcEEEEeC
Q 010362 261 MHDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQ---CLRRLERAHSEGVTSLVFSR--DGSQILSTSFDSTARIHGL 335 (512)
Q Consensus 261 ~h~~~v~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~---~~~~~~~~~~~~i~~~~~~~--~~~~l~~~~~dg~v~i~d~ 335 (512)
.|...|..+...--|+.||||+.|++|+|+.++++. .+..+. +|.++|..++|.. -|.+|++++.||.|.+|.-
T Consensus 9 ~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~-Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke 87 (299)
T KOG1332|consen 9 QHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELT-GHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKE 87 (299)
T ss_pred hhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEec-CCCCCeeEEeecccccCcEeeEeecCceEEEEec
Confidence 488888888888889999999999999999997653 466665 9999999999975 7999999999999999998
Q ss_pred CCCce--eEEeeCCccceeEEEEcCC--CCEEEEEeCCCcEEEEeCCCCceeeecCCCCCCCCCCceeEEEEEcCCCC--
Q 010362 336 KSGKL--LKEFRGHSSYVNDAIFTND--GSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNP-- 409 (512)
Q Consensus 336 ~~~~~--~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-- 409 (512)
.+++- ...+..|...|++++|.|. |-.|++++.||.|.|.+.+... ..........|...+++++|.|..-
T Consensus 88 ~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g---~w~t~ki~~aH~~GvnsVswapa~~~g 164 (299)
T KOG1332|consen 88 ENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSG---GWTTSKIVFAHEIGVNSVSWAPASAPG 164 (299)
T ss_pred CCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCC---CccchhhhhccccccceeeecCcCCCc
Confidence 77743 3456779999999999884 5678999999999999987641 1112223356888999999998721
Q ss_pred -----------CeEEEEcCCCcEEEEecCCeEEEEeeCCcccCCcEEEEEECCCC----CEEEEEeCCCeEEEEEcCCC-
Q 010362 410 -----------DHIVVCNKTSSIYIMTLQGQVVKSFSSGKREGGDFVAACVSPKG----EWIYCVGEDRNLYCFSHQSG- 473 (512)
Q Consensus 410 -----------~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g----~~l~~g~~dg~i~iwd~~~~- 473 (512)
..|++++.|..+++|+.+...-..-.....|..-++.++|.|.- .+|++++.||++.||.....
T Consensus 165 ~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~ 244 (299)
T KOG1332|consen 165 SLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEY 244 (299)
T ss_pred cccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCcc
Confidence 45999999999999999864222222234466788999999864 57999999999999987632
Q ss_pred e--eEEeccccCCCeEEEEEcCCCCeEEEEECCCeEEEecC
Q 010362 474 K--LEHLMKVHEKDVIGVTHHPHRNLLATYGEDCTMKLWKP 512 (512)
Q Consensus 474 ~--~~~~~~~h~~~v~~v~~~p~~~~l~s~~~dg~i~iW~~ 512 (512)
+ ....+......+..+.|++.|++|+.++.|+.|.+|++
T Consensus 245 e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke 285 (299)
T KOG1332|consen 245 EPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKE 285 (299)
T ss_pred CcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEe
Confidence 1 11223334578999999999999999999999999974
No 127
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.94 E-value=6.7e-24 Score=197.35 Aligned_cols=283 Identities=17% Similarity=0.189 Sum_probs=205.6
Q ss_pred cccccccCccccceEEEecCcCceEEEEECCCCCEE-EEEeCCCeEEEEEcCCCeeeccccccccceeeccCcceeEEEE
Q 010362 193 KQDVEDMYPTTLSHTIKFGTKSHAECARFSPDGQFL-VSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEF 271 (512)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l-~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 271 (512)
...+|+.........+. ++ ..+.+++|+|+|+.+ ++++.++.|++||..+++....+.. + ..+..++|
T Consensus 12 ~v~~~d~~t~~~~~~~~-~~-~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~--------~-~~~~~~~~ 80 (300)
T TIGR03866 12 TISVIDTATLEVTRTFP-VG-QRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPS--------G-PDPELFAL 80 (300)
T ss_pred EEEEEECCCCceEEEEE-CC-CCCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccC--------C-CCccEEEE
Confidence 44455655555666664 33 346789999999976 5667899999999988876543321 2 23567899
Q ss_pred cCCCCeEEEE-eCCCeEEEEEccCCeeeEEeccccccCeEEEEEecCCCEEEEEeCCC-cEEEEeCCCCceeEEeeCCcc
Q 010362 272 SRDSEMLASG-SQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDS-TARIHGLKSGKLLKEFRGHSS 349 (512)
Q Consensus 272 s~~~~~l~s~-~~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg-~v~i~d~~~~~~~~~~~~~~~ 349 (512)
+|+++.++++ +.++.+++||+.+++.+..+. +...+.+++|+|++..+++++.++ .+.+||.++++....... ..
T Consensus 81 ~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~--~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~-~~ 157 (300)
T TIGR03866 81 HPNGKILYIANEDDNLVTVIDIETRKVLAEIP--VGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLV-DQ 157 (300)
T ss_pred CCCCCEEEEEcCCCCeEEEEECCCCeEEeEee--CCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEc-CC
Confidence 9999977654 568999999999988777664 334578899999999999988765 467789988877655443 23
Q ss_pred ceeEEEEcCCCCEEEEE-eCCCcEEEEeCCCCceeeecCCCCC-CCCCCceeEEEEEcCCCCCeEEEEcCCCcEEEEecC
Q 010362 350 YVNDAIFTNDGSRVVTA-SSDCTVKVWDLKSTDCLQTFKPPPP-LRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQ 427 (512)
Q Consensus 350 ~v~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~~~~~ 427 (512)
.+.++.|+|++.+++++ ..++.|++||+++++....+..... ..........+.++|++...+++...++.+.+||..
T Consensus 158 ~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~ 237 (300)
T TIGR03866 158 RPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAK 237 (300)
T ss_pred CccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECC
Confidence 46789999999988655 4689999999999877665542211 001112345688899885555666667789999998
Q ss_pred CeEEEEeeCCcccCCcEEEEEECCCCCEEEEEe-CCCeEEEEEcCCCeeEEeccccCCCeEEEEEcC
Q 010362 428 GQVVKSFSSGKREGGDFVAACVSPKGEWIYCVG-EDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHP 493 (512)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~-~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~p 493 (512)
......... ....+.+++|+|+|++|++++ .+|.|.+||+.+++++..++.. ...+.++++|
T Consensus 238 ~~~~~~~~~---~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~~~ 300 (300)
T TIGR03866 238 TYEVLDYLL---VGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKVG-RLPWGVVVRP 300 (300)
T ss_pred CCcEEEEEE---eCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEcc-cccceeEeCC
Confidence 443332221 123577899999999998875 6899999999999999988754 5668888876
No 128
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.94 E-value=8.3e-25 Score=202.76 Aligned_cols=303 Identities=18% Similarity=0.290 Sum_probs=226.1
Q ss_pred ceEEEecCcCceEEEEECCCCC---EEEEEeCCCeEEEEEcCCCeeec---------------------c--ccccccce
Q 010362 205 SHTIKFGTKSHAECARFSPDGQ---FLVSCSFDGFIEVWDYLSGKLKK---------------------D--LQYQADET 258 (512)
Q Consensus 205 ~~~~~~~h~~~v~~~~~s~~~~---~l~sg~~dg~i~iwd~~~~~~~~---------------------~--~~~~~~~~ 258 (512)
...+. ||.+.|.+++|...+. +||++|.|..|+||.+.-+.... . +.......
T Consensus 184 v~el~-GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eal 262 (764)
T KOG1063|consen 184 VAELE-GHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEAL 262 (764)
T ss_pred EEEee-ccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhh
Confidence 34444 9999999999987544 89999999999999874332110 0 11111234
Q ss_pred eeccCcceeEEEEcCCCCeEEEEeCCCeEEEEEccCCe--eeEEec----cccccCeEEEEEecCCCEEEEEeCCCcEEE
Q 010362 259 FMMHDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQ--CLRRLE----RAHSEGVTSLVFSRDGSQILSTSFDSTARI 332 (512)
Q Consensus 259 ~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~--~~~~~~----~~~~~~i~~~~~~~~~~~l~~~~~dg~v~i 332 (512)
+.||.+.|.++.|+|.+..|++++.|.++.+|...+.. -+.... .+........-|+|+++.+++-+..|..++
T Consensus 263 l~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hl 342 (764)
T KOG1063|consen 263 LMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHL 342 (764)
T ss_pred hcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEE
Confidence 56999999999999999999999999999999876542 221111 133456889999999999999999999999
Q ss_pred EeCCCC---ceeEEeeCCccceeEEEEcCCCCEEEEEeCCCcEEEEeCCCC-----------------------------
Q 010362 333 HGLKSG---KLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKST----------------------------- 380 (512)
Q Consensus 333 ~d~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~----------------------------- 380 (512)
|-.... .....+.+|...|++++|+|.|.+|++++.|.+-|+|-.-..
T Consensus 343 Wkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~F 422 (764)
T KOG1063|consen 343 WKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQF 422 (764)
T ss_pred EeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccCCcee
Confidence 983322 234456789999999999999999999999988777643200
Q ss_pred ------ceeeecCCC-----------------------------------------------------------------
Q 010362 381 ------DCLQTFKPP----------------------------------------------------------------- 389 (512)
Q Consensus 381 ------~~~~~~~~~----------------------------------------------------------------- 389 (512)
+..+.|..+
T Consensus 423 VSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~e 502 (764)
T KOG1063|consen 423 VSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTE 502 (764)
T ss_pred eecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccC
Confidence 000000000
Q ss_pred ----------------CCCCCCCceeEEEEEcCCCCCeEEEEcCCC-----cEEEEecCCeEEEEeeCCcccCCcEEEEE
Q 010362 390 ----------------PPLRGGDASVNSVHLFPKNPDHIVVCNKTS-----SIYIMTLQGQVVKSFSSGKREGGDFVAAC 448 (512)
Q Consensus 390 ----------------~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~-----~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (512)
..+.+|...|++++.+|++ +++++++... .|++|+...-.... ....|.-.|+.++
T Consensus 503 PP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~g-nliASaCKS~~~ehAvI~lw~t~~W~~~~--~L~~HsLTVT~l~ 579 (764)
T KOG1063|consen 503 PPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTG-NLIASACKSSLKEHAVIRLWNTANWLQVQ--ELEGHSLTVTRLA 579 (764)
T ss_pred CChHHHHHHhccchhhHHhccCceeEEEEEecCCC-CEEeehhhhCCccceEEEEEeccchhhhh--eecccceEEEEEE
Confidence 0112566789999999988 8888887654 48899887443322 1223456799999
Q ss_pred ECCCCCEEEEEeCCCeEEEEEcCCCee----EEeccccCCCeEEEEEcCCCCeEEEEECCCeEEEec
Q 010362 449 VSPKGEWIYCVGEDRNLYCFSHQSGKL----EHLMKVHEKDVIGVTHHPHRNLLATYGEDCTMKLWK 511 (512)
Q Consensus 449 ~s~~g~~l~~g~~dg~i~iwd~~~~~~----~~~~~~h~~~v~~v~~~p~~~~l~s~~~dg~i~iW~ 511 (512)
|||||++|++.+.|.++.+|....... ....+.|+.-|.+..|+|++.+++|+|.|.+|+||.
T Consensus 580 FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~ 646 (764)
T KOG1063|consen 580 FSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWE 646 (764)
T ss_pred ECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEe
Confidence 999999999999999999998754322 233678999999999999999999999999999996
No 129
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=9.5e-27 Score=218.18 Aligned_cols=246 Identities=19% Similarity=0.322 Sum_probs=195.6
Q ss_pred eEEEEECC-CCCEEEEEeCCCeEEEEEcCCCeeeccccccccceeeccCcceeEEEEcC-CCCeEEEEeCCCeEEEEEcc
Q 010362 216 AECARFSP-DGQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSR-DSEMLASGSQDGKIKVWRIR 293 (512)
Q Consensus 216 v~~~~~s~-~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~-~~~~l~s~~~dg~i~vwd~~ 293 (512)
+..|.|+. +.++|||++..|.|.+||+...... .....|..|...++++.|++ ...+|++||.||+|++||++
T Consensus 90 ~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rn-----k~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR 164 (839)
T KOG0269|consen 90 AADVKWGQLYSNLIATCSTNGVISVWDLNKSIRN-----KLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLR 164 (839)
T ss_pred hhhcccccchhhhheeecCCCcEEEEecCccccc-----hhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeee
Confidence 34577775 5789999999999999999763111 12224566999999999998 45789999999999999999
Q ss_pred CCeeeEEeccccccCeEEEEEec-CCCEEEEEeCCCcEEEEeCCCC-ceeEEeeCCccceeEEEEcCCCCEEEEEeCCCc
Q 010362 294 SGQCLRRLERAHSEGVTSLVFSR-DGSQILSTSFDSTARIHGLKSG-KLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCT 371 (512)
Q Consensus 294 ~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~v~i~d~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 371 (512)
..+...++. +....|..+.|+| .+.+|+++...|.+.+||++.. ++...+..|.++|.|+.|+|++.+|+|||.|++
T Consensus 165 ~~~S~~t~~-~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~ 243 (839)
T KOG0269|consen 165 SKKSKSTFR-SNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKM 243 (839)
T ss_pred ccccccccc-ccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCcc
Confidence 988888876 6788999999999 5788999999999999999865 556788899999999999999999999999999
Q ss_pred EEEEeCCCCceeeecCCCCCCCCCCceeEEEEEcCCCCCeEEEEc--CCCcEEEEecCCeEEEEeeCCcccCCcEEEEEE
Q 010362 372 VKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCN--KTSSIYIMTLQGQVVKSFSSGKREGGDFVAACV 449 (512)
Q Consensus 372 i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (512)
|+|||..+.+...... .....++..+.|-|..+..+++++ .|..|++||++..-+..... ..|...++.++|
T Consensus 244 vkiWd~t~~~~~~~~t-----InTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~-~eH~~~vt~i~W 317 (839)
T KOG0269|consen 244 VKIWDMTDSRAKPKHT-----INTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATF-LEHTDSVTGIAW 317 (839)
T ss_pred EEEEeccCCCccceeE-----EeecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceee-eccCccccceec
Confidence 9999998654322211 113458999999999988898887 46789999998553322211 124566788999
Q ss_pred -CCCCCEEEEEeCCCeEEEEEcCCC
Q 010362 450 -SPKGEWIYCVGEDRNLYCFSHQSG 473 (512)
Q Consensus 450 -s~~g~~l~~g~~dg~i~iwd~~~~ 473 (512)
+.|...+.+++.||.|..-.++++
T Consensus 318 ~~~d~~~l~s~sKD~tv~qh~~kna 342 (839)
T KOG0269|consen 318 DSGDRINLWSCSKDGTVLQHLFKNA 342 (839)
T ss_pred cCCCceeeEeecCccHHHHhhhhcc
Confidence 557778899999998877665554
No 130
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=4.5e-26 Score=213.66 Aligned_cols=286 Identities=17% Similarity=0.241 Sum_probs=219.0
Q ss_pred cCceEEEEECCCCCEEEEEeCCCeEEEEEcCCCeeeccccccccceeeccCcceeEEEEcC-CCCeEEEEeCCCeEEEEE
Q 010362 213 KSHAECARFSPDGQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSR-DSEMLASGSQDGKIKVWR 291 (512)
Q Consensus 213 ~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~-~~~~l~s~~~dg~i~vwd 291 (512)
+.....++..++-..++.++ ...++||.+.............. .-..-...+..++|+. +.++||+++..|.|.+||
T Consensus 39 k~~~nAIs~nr~~~qiv~AG-rs~lklyai~~~~~~~~~~~~~k-~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWd 116 (839)
T KOG0269|consen 39 KAKANAISVNRDINQIVVAG-RSLLKLYAINPNDFSEKCNHRFK-TKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWD 116 (839)
T ss_pred ccccceEeecCCcceeEEec-ccceeeEeeCcccCCcceeeecc-cccceeeehhhcccccchhhhheeecCCCcEEEEe
Confidence 44566778888888888887 45788887765432222111100 0000123466788876 567999999999999999
Q ss_pred ccC---CeeeEEeccccccCeEEEEEecC-CCEEEEEeCCCcEEEEeCCCCceeEEeeCCccceeEEEEcC-CCCEEEEE
Q 010362 292 IRS---GQCLRRLERAHSEGVTSLVFSRD-GSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTN-DGSRVVTA 366 (512)
Q Consensus 292 ~~~---~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~ 366 (512)
+.. .+.+..+. .|...+.+++|++. ..+|++|+.||+|++||++..+...++.+....|+++.|+| .+..++++
T Consensus 117 lnk~~rnk~l~~f~-EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~ 195 (839)
T KOG0269|consen 117 LNKSIRNKLLTVFN-EHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASI 195 (839)
T ss_pred cCccccchhhhHhh-hhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEe
Confidence 976 44455565 89999999999984 57889999999999999999999999999888999999999 67789999
Q ss_pred eCCCcEEEEeCCCCceeeecCCCCCCCCCCceeEEEEEcCCCCCeEEEEcCCCcEEEEecCCeEEEEeeCCcccCCcEEE
Q 010362 367 SSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQVVKSFSSGKREGGDFVA 446 (512)
Q Consensus 367 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (512)
...|.+++||+|.... ....+.+|.+++.++.|+| +..++++|+.|+.+++|+..+.......... ...++.+
T Consensus 196 ~dsG~lqlWDlRqp~r-----~~~k~~AH~GpV~c~nwhP-nr~~lATGGRDK~vkiWd~t~~~~~~~~tIn-Tiapv~r 268 (839)
T KOG0269|consen 196 HDSGYLQLWDLRQPDR-----CEKKLTAHNGPVLCLNWHP-NREWLATGGRDKMVKIWDMTDSRAKPKHTIN-TIAPVGR 268 (839)
T ss_pred cCCceEEEeeccCchh-----HHHHhhcccCceEEEeecC-CCceeeecCCCccEEEEeccCCCccceeEEe-ecceeee
Confidence 9999999999997542 1122347899999999999 5599999999999999999854333222221 2467889
Q ss_pred EEECCCCCE-EEEEe--CCCeEEEEEcCCC-eeEEeccccCCCeEEEEEcC-CCCeEEEEECCCeEE
Q 010362 447 ACVSPKGEW-IYCVG--EDRNLYCFSHQSG-KLEHLMKVHEKDVIGVTHHP-HRNLLATYGEDCTMK 508 (512)
Q Consensus 447 ~~~s~~g~~-l~~g~--~dg~i~iwd~~~~-~~~~~~~~h~~~v~~v~~~p-~~~~l~s~~~dg~i~ 508 (512)
+.|-|...+ |++++ .|-.|+|||++.. -+..++..|...++.++|.. |...+.+++.||+|.
T Consensus 269 VkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~ 335 (839)
T KOG0269|consen 269 VKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVL 335 (839)
T ss_pred eeeccCccchhhhhhccccceEEEEeeccccccceeeeccCccccceeccCCCceeeEeecCccHHH
Confidence 999998765 44444 5778999999754 45677888999999999976 567889999999863
No 131
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.94 E-value=7e-25 Score=203.78 Aligned_cols=285 Identities=21% Similarity=0.258 Sum_probs=223.9
Q ss_pred EEEEECCCCCEEEEEeCCCeEEEEEcCCCeeeccccccccceeeccCcceeEEEEcCC-----------CCeEEEEeCCC
Q 010362 217 ECARFSPDGQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRD-----------SEMLASGSQDG 285 (512)
Q Consensus 217 ~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~-----------~~~l~s~~~dg 285 (512)
-++.|+|..+.|...-.|..++|||++.-...... ..+.-|...|+.+.--|- ...+++|+.|+
T Consensus 328 IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~-----~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~ 402 (1080)
T KOG1408|consen 328 IACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKC-----SSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDG 402 (1080)
T ss_pred eEEEecCCCceEEEEEcCceEEEEeccccccccce-----eeeeeccceeeeeccccccccCcccccCCccceeEecCCC
Confidence 45789999999999999999999999875543321 123338888888876651 23589999999
Q ss_pred eEEEEEccCCeeeEEec------------------------------------cccccCeEEEEEecCCCEEEEEeCCCc
Q 010362 286 KIKVWRIRSGQCLRRLE------------------------------------RAHSEGVTSLVFSRDGSQILSTSFDST 329 (512)
Q Consensus 286 ~i~vwd~~~~~~~~~~~------------------------------------~~~~~~i~~~~~~~~~~~l~~~~~dg~ 329 (512)
+|++||+..+..-..+. ......+.+++.+|+|++|++|..-|+
T Consensus 403 TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~Gn 482 (1080)
T KOG1408|consen 403 TIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGN 482 (1080)
T ss_pred cEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCc
Confidence 99999997532110000 112346899999999999999999999
Q ss_pred EEEEeCCCCceeEEeeCCccceeEEEEcC---CCCEEEEEeCCCcEEEEeCCCCceeeecCCCCCCCCCCceeEEEEEcC
Q 010362 330 ARIHGLKSGKLLKEFRGHSSYVNDAIFTN---DGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFP 406 (512)
Q Consensus 330 v~i~d~~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 406 (512)
+++|++.+-+....+..|.+.|.|+.|+. ..++|++++.|..|+|||.... +.....+.+|...|+++.|..
T Consensus 483 lrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rn-----y~l~qtld~HSssITsvKFa~ 557 (1080)
T KOG1408|consen 483 LRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRN-----YDLVQTLDGHSSSITSVKFAC 557 (1080)
T ss_pred eEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccc-----cchhhhhcccccceeEEEEee
Confidence 99999999888889999999999999985 3468999999999999998743 333445568899999999987
Q ss_pred CCC-CeEEEEcCCCcEEEEecCC-eEEEEeeCC--cccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCeeEEeccc-
Q 010362 407 KNP-DHIVVCNKTSSIYIMTLQG-QVVKSFSSG--KREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKV- 481 (512)
Q Consensus 407 ~~~-~~l~~~~~~~~i~~~~~~~-~~~~~~~~~--~~~~~~~~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~- 481 (512)
.+. ..+++|+.|..|.+-..+. .....+..+ ......+..+++.|..+++++++.|..|+|||+.+|+..+.+++
T Consensus 558 ~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs 637 (1080)
T KOG1408|consen 558 NGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGS 637 (1080)
T ss_pred cCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeeccc
Confidence 653 4688888888887766551 111111111 11245678999999999999999999999999999999999875
Q ss_pred --cCCCeEEEEEcCCCCeEEEEECCCeEEEec
Q 010362 482 --HEKDVIGVTHHPHRNLLATYGEDCTMKLWK 511 (512)
Q Consensus 482 --h~~~v~~v~~~p~~~~l~s~~~dg~i~iW~ 511 (512)
|.+....+...|.|.++|+.+.|.++.++|
T Consensus 638 ~~~eG~lIKv~lDPSgiY~atScsdktl~~~D 669 (1080)
T KOG1408|consen 638 RDHEGDLIKVILDPSGIYLATSCSDKTLCFVD 669 (1080)
T ss_pred ccCCCceEEEEECCCccEEEEeecCCceEEEE
Confidence 667888999999999999999999999987
No 132
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.94 E-value=7.3e-24 Score=189.54 Aligned_cols=299 Identities=16% Similarity=0.290 Sum_probs=230.2
Q ss_pred cccccccCccccceEEEecCcCceEEEEECC--CCCEEEEE--eCCCeEEEEEcCCCeeeccccccccceeeccCcceeE
Q 010362 193 KQDVEDMYPTTLSHTIKFGTKSHAECARFSP--DGQFLVSC--SFDGFIEVWDYLSGKLKKDLQYQADETFMMHDETVLC 268 (512)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~--~~~~l~sg--~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~ 268 (512)
+..+|+.......+.+- .-...|.|++||+ .|.+++.- +.+..+.+||...+........ .+..|..
T Consensus 135 hvriWdsv~L~TL~V~g-~f~~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~~~~vk~--------sne~v~~ 205 (626)
T KOG2106|consen 135 HVRIWDSVTLSTLHVIG-FFDRGVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAKLGPVKT--------SNEVVFL 205 (626)
T ss_pred eeeecccccceeeeeec-cccccceeeeecccCCCceEEEecCCCccccchhhchhhhccCccee--------ccceEEE
Confidence 45567777777777776 5566799999998 45566554 3566799999988776655442 5677899
Q ss_pred EEEcCCCCeEEEEeCCCeEEEEEccCCeeeEE---eccccccCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEee
Q 010362 269 IEFSRDSEMLASGSQDGKIKVWRIRSGQCLRR---LERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFR 345 (512)
Q Consensus 269 l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~---~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~ 345 (512)
..|+|.+..++.....|.+.+|+.+.+...++ +.......|.|++|.++|. +++|..+|.|.||+..+.+..+...
T Consensus 206 a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~~~k~~~ 284 (626)
T KOG2106|consen 206 ATFHPTDPNLIITCGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGD-VITGDSGGNILIWSKGTNRISKQVH 284 (626)
T ss_pred EEeccCCCcEEEEeCCceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCC-EEeecCCceEEEEeCCCceEEeEee
Confidence 99999665544444578999999998876544 3334457899999999986 6799999999999998888887777
Q ss_pred CCccceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeecCCCCC----------------------------------
Q 010362 346 GHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPP---------------------------------- 391 (512)
Q Consensus 346 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~---------------------------------- 391 (512)
.|++.|.+++...+|. |++|+.|..|..||- .-+..+..+.+..
T Consensus 285 aH~ggv~~L~~lr~Gt-llSGgKDRki~~Wd~-~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~ 362 (626)
T KOG2106|consen 285 AHDGGVFSLCMLRDGT-LLSGGKDRKIILWDD-NYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTL 362 (626)
T ss_pred ecCCceEEEEEecCcc-EeecCccceEEeccc-cccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceE
Confidence 9999999999999986 555999999999993 2222222222211
Q ss_pred -CCCCCceeEEEEEcCCCCCeEEEEcCCCcEEEEecCCeEEEEeeCCcccCCcEEEEEECCCCCEEEEEeCCCeEEEEEc
Q 010362 392 -LRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSH 470 (512)
Q Consensus 392 -~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~dg~i~iwd~ 470 (512)
..+|......++.+|.. +.+++++.|+.+.+|+ ..+....... ..+..++.|+|.| .++.|+..|...+.|.
T Consensus 363 ~v~gh~delwgla~hps~-~q~~T~gqdk~v~lW~-~~k~~wt~~~----~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~ 435 (626)
T KOG2106|consen 363 TVQGHGDELWGLATHPSK-NQLLTCGQDKHVRLWN-DHKLEWTKII----EDPAECADFHPSG-VVAVGTATGRWFVLDT 435 (626)
T ss_pred EEEecccceeeEEcCCCh-hheeeccCcceEEEcc-CCceeEEEEe----cCceeEeeccCcc-eEEEeeccceEEEEec
Confidence 12445567778888877 8899999999999999 4333333222 3457899999999 9999999999999999
Q ss_pred CCCeeEEeccccCCCeEEEEEcCCCCeEEEEECCCeEEEec
Q 010362 471 QSGKLEHLMKVHEKDVIGVTHHPHRNLLATYGEDCTMKLWK 511 (512)
Q Consensus 471 ~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~~~dg~i~iW~ 511 (512)
.+..++..-.. ..++++++|+|+|.+||.|+.|+.|+||.
T Consensus 436 e~~~lv~~~~d-~~~ls~v~ysp~G~~lAvgs~d~~iyiy~ 475 (626)
T KOG2106|consen 436 ETQDLVTIHTD-NEQLSVVRYSPDGAFLAVGSHDNHIYIYR 475 (626)
T ss_pred ccceeEEEEec-CCceEEEEEcCCCCEEEEecCCCeEEEEE
Confidence 99776665554 88999999999999999999999999985
No 133
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=3.2e-24 Score=180.34 Aligned_cols=258 Identities=17% Similarity=0.265 Sum_probs=196.7
Q ss_pred eEEEecCcCceEEEEECCCCCEEEEEeCCCeEEEEEcCCCeeeccccccccceeeccCcceeEEEEcC--CCCeEEEEeC
Q 010362 206 HTIKFGTKSHAECARFSPDGQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSR--DSEMLASGSQ 283 (512)
Q Consensus 206 ~~~~~~h~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~--~~~~l~s~~~ 283 (512)
..+..+|.+-|.|+.|.+.|+.+|+|+.|++|+|||.....-. +.....++.|.+.|..+.|.+ -|+.+|+|+.
T Consensus 6 ~pi~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~----W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~ 81 (361)
T KOG2445|consen 6 APIDSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGT----WSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSY 81 (361)
T ss_pred cccccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCc----eEEeeeEEecCCcEEEEEecCccccceEEEEec
Confidence 3456699999999999999999999999999999997544322 223345677999999999987 5899999999
Q ss_pred CCeEEEEEccC------C---eeeEEeccccccCeEEEEEecC--CCEEEEEeCCCcEEEEeCCCCc------eeEEee-
Q 010362 284 DGKIKVWRIRS------G---QCLRRLERAHSEGVTSLVFSRD--GSQILSTSFDSTARIHGLKSGK------LLKEFR- 345 (512)
Q Consensus 284 dg~i~vwd~~~------~---~~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~dg~v~i~d~~~~~------~~~~~~- 345 (512)
|+++.||.=.. + ....++. .....|+++.|.|. |-.+++++.||.++||+....- ...+++
T Consensus 82 Drtv~iWEE~~~~~~~~~~~Wv~~ttl~-DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~ 160 (361)
T KOG2445|consen 82 DRTVSIWEEQEKSEEAHGRRWVRRTTLV-DSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQN 160 (361)
T ss_pred CCceeeeeecccccccccceeEEEEEee-cCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhh
Confidence 99999997421 1 1223333 56788999999994 7789999999999999865432 222333
Q ss_pred ------CCccceeEEEEcCC---CCEEEEEeCC-----CcEEEEeCCCCceeeecCCCCCCCCCCceeEEEEEcCCC---
Q 010362 346 ------GHSSYVNDAIFTND---GSRVVTASSD-----CTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKN--- 408 (512)
Q Consensus 346 ------~~~~~v~~~~~~~~---~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--- 408 (512)
.+..+..|+.|+|. ..+|+.|+.+ +.+.||....+. +.+.....+.++..+|+.++|.|.-
T Consensus 161 ~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~--rKw~kva~L~d~~dpI~di~wAPn~Gr~ 238 (361)
T KOG2445|consen 161 VIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENG--RKWLKVAELPDHTDPIRDISWAPNIGRS 238 (361)
T ss_pred ccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCc--ceeeeehhcCCCCCcceeeeeccccCCc
Confidence 35567889999974 4567777765 478899765432 2222233445789999999999974
Q ss_pred CCeEEEEcCCCcEEEEecCCe------------------EEEEeeCCcccCCcEEEEEECCCCCEEEEEeCCCeEEEEEc
Q 010362 409 PDHIVVCNKTSSIYIMTLQGQ------------------VVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSH 470 (512)
Q Consensus 409 ~~~l~~~~~~~~i~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~dg~i~iwd~ 470 (512)
..++++++.|| |+||.+... .+..+.....|++.+..++|.-.|..|.+.|.||.|++|..
T Consensus 239 y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWka 317 (361)
T KOG2445|consen 239 YHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKA 317 (361)
T ss_pred eeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhh
Confidence 35789999999 999998631 23444555667889999999999999999999999999976
Q ss_pred C
Q 010362 471 Q 471 (512)
Q Consensus 471 ~ 471 (512)
.
T Consensus 318 n 318 (361)
T KOG2445|consen 318 N 318 (361)
T ss_pred h
Confidence 4
No 134
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=4.2e-23 Score=191.22 Aligned_cols=318 Identities=19% Similarity=0.253 Sum_probs=232.0
Q ss_pred eeccCcccccccccccCccccceEEEecCcCceEEEEECCCCCEEEEEeCCCeEEEEEcCCCeeeccccccccceeeccC
Q 010362 184 DLFRGTAAMKQDVEDMYPTTLSHTIKFGTKSHAECARFSPDGQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHD 263 (512)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~ 263 (512)
.++.....+....||.........+. ...+.|++++.+|.++.++.|+.||.+..++...+...... .+...+
T Consensus 82 RLFS~g~sg~i~EwDl~~lk~~~~~d-~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r------~l~rq~ 154 (691)
T KOG2048|consen 82 RLFSSGLSGSITEWDLHTLKQKYNID-SNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKR------SLMRQK 154 (691)
T ss_pred eEEeecCCceEEEEecccCceeEEec-CCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEe------eccccc
Confidence 44444555677888888888888776 77889999999999999999999998888888777765433 233357
Q ss_pred cceeEEEEcCCCCeEEEEeCCCeEEEEEccCCeeeEEec-------cccccCeEEEEEecCCCEEEEEeCCCcEEEEeCC
Q 010362 264 ETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLE-------RAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLK 336 (512)
Q Consensus 264 ~~v~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~-------~~~~~~i~~~~~~~~~~~l~~~~~dg~v~i~d~~ 336 (512)
+.|.+++|+|++..+++|+.||.|++||+.++..+.... .....-|.++.|..++ .|++|..-|+|.+||..
T Consensus 155 sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-tI~sgDS~G~V~FWd~~ 233 (691)
T KOG2048|consen 155 SRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS-TIASGDSAGTVTFWDSI 233 (691)
T ss_pred ceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC-cEEEecCCceEEEEccc
Confidence 899999999999999999999999999999998766221 1123347778887554 79999999999999999
Q ss_pred CCceeEEeeCCccceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeecCCCCCCC-----------------------
Q 010362 337 SGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLR----------------------- 393 (512)
Q Consensus 337 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~----------------------- 393 (512)
.+..+..+..|.+.|.+++..++++++++++.|+.|.-|...+..............
T Consensus 234 ~gTLiqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~~l~sgG~d~~l 313 (691)
T KOG2048|consen 234 FGTLIQSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIENALISGGRDFTL 313 (691)
T ss_pred CcchhhhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecceEEecceeeEE
Confidence 999999999999999999999999999999999998887765542200000000000
Q ss_pred ------------------------------------------------------------------CCCceeEEEEEcCC
Q 010362 394 ------------------------------------------------------------------GGDASVNSVHLFPK 407 (512)
Q Consensus 394 ------------------------------------------------------------------~~~~~i~~~~~~~~ 407 (512)
.....|.+.+.+|+
T Consensus 314 ~i~~s~~~~~~~h~~~~~~p~~~~v~~a~~~~L~~~w~~h~v~lwrlGS~~~~g~~~~~~Llkl~~k~~~nIs~~aiSPd 393 (691)
T KOG2048|consen 314 AICSSREFKNMDHRQKNLFPASDRVSVAPENRLLVLWKAHGVDLWRLGSVILQGEYNYIHLLKLFTKEKENISCAAISPD 393 (691)
T ss_pred EEccccccCchhhhccccccccceeecCccceEEEEeccccccceeccCcccccccChhhheeeecCCccceeeeccCCC
Confidence 01134566677777
Q ss_pred CCCeEEEEcC-----------------------------------------------CCcEEEEecCCeE---EEEeeCC
Q 010362 408 NPDHIVVCNK-----------------------------------------------TSSIYIMTLQGQV---VKSFSSG 437 (512)
Q Consensus 408 ~~~~l~~~~~-----------------------------------------------~~~i~~~~~~~~~---~~~~~~~ 437 (512)
+ +.++.+.- ...+..++..+.. ...+..
T Consensus 394 g-~~Ia~st~~~~~iy~L~~~~~vk~~~v~~~~~~~~~a~~i~ftid~~k~~~~s~~~~~le~~el~~ps~kel~~~~~- 471 (691)
T KOG2048|consen 394 G-NLIAISTVSRTKIYRLQPDPNVKVINVDDVPLALLDASAISFTIDKNKLFLVSKNIFSLEEFELETPSFKELKSIQS- 471 (691)
T ss_pred C-CEEEEeeccceEEEEeccCcceeEEEeccchhhhccceeeEEEecCceEEEEecccceeEEEEecCcchhhhhcccc-
Confidence 6 45544441 1111111111000 000001
Q ss_pred cccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCeeEEeccccCCCeEEEEEcC-CCCeEEEEECCCeEEEec
Q 010362 438 KREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHP-HRNLLATYGEDCTMKLWK 511 (512)
Q Consensus 438 ~~~~~~~~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~p-~~~~l~s~~~dg~i~iW~ 511 (512)
......+..+..||+|+||++.+..|.|.+|++++++.......-...|++++++| +.+.++.+..|+.+.=||
T Consensus 472 ~~~~~~I~~l~~SsdG~yiaa~~t~g~I~v~nl~~~~~~~l~~rln~~vTa~~~~~~~~~~lvvats~nQv~efd 546 (691)
T KOG2048|consen 472 QAKCPSISRLVVSSDGNYIAAISTRGQIFVYNLETLESHLLKVRLNIDVTAAAFSPFVRNRLVVATSNNQVFEFD 546 (691)
T ss_pred ccCCCcceeEEEcCCCCEEEEEeccceEEEEEcccceeecchhccCcceeeeeccccccCcEEEEecCCeEEEEe
Confidence 11345688899999999999999999999999999887666545558899999996 667888888899887665
No 135
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.93 E-value=2.9e-24 Score=182.17 Aligned_cols=304 Identities=18% Similarity=0.254 Sum_probs=225.2
Q ss_pred CccccceEEEecCcCceEEEEECC-----CCCEEEEEeCCCeEEEEEcCCCeeeccccccccceeeccCcceeEEEEcCC
Q 010362 200 YPTTLSHTIKFGTKSHAECARFSP-----DGQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRD 274 (512)
Q Consensus 200 ~~~~~~~~~~~~h~~~v~~~~~s~-----~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~ 274 (512)
.+......++.+|+.+|..++|++ ..+.+|+++ ...+.+|......-.+.++... -..|......++|+-+
T Consensus 25 ~~yk~t~~l~ed~~~~I~gv~fN~~~~~~e~~vfatvG-~~rvtiy~c~~d~~ir~lq~y~---D~d~~Esfytcsw~yd 100 (385)
T KOG1034|consen 25 RSYKYTNHLKEDHNKPIFGVAFNSFLGCDEPQVFATVG-GNRVTIYECPGDGGIRLLQSYA---DEDHDESFYTCSWSYD 100 (385)
T ss_pred cceEeeeehhccCCCccceeeeehhcCCCCCceEEEeC-CcEEEEEEECCccceeeeeecc---CCCCCcceEEEEEEec
Confidence 344555667779999999999985 345666666 5678899876544222222111 1137788888999874
Q ss_pred ----CCeEEEEeCCCeEEEEEccCCeeeEEeccccccCeEEEEEecC-CCEEEEEeCCCcEEEEeCCCCceeEEe---eC
Q 010362 275 ----SEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRD-GSQILSTSFDSTARIHGLKSGKLLKEF---RG 346 (512)
Q Consensus 275 ----~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~v~i~d~~~~~~~~~~---~~ 346 (512)
+.++|.|+.-|.|+|.|+.++++...+. +|...|+.+.++|+ .+++++++.|..|++|++++..++..+ .+
T Consensus 101 ~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~-ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~eg 179 (385)
T KOG1034|consen 101 SNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYR-GHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEG 179 (385)
T ss_pred CCCCCeeEEeecceeEEEEEecchhhhcccee-ccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEeccccc
Confidence 3479999999999999999999999987 99999999999996 478899999999999999999998877 46
Q ss_pred CccceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeecCCC----------------------CCCCCCCceeEEEEE
Q 010362 347 HSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPP----------------------PPLRGGDASVNSVHL 404 (512)
Q Consensus 347 ~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~----------------------~~~~~~~~~i~~~~~ 404 (512)
|...|.++.|+++|.++++++.|.++++|++...+....++.. .....|...|.++.|
T Consensus 180 HrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw 259 (385)
T KOG1034|consen 180 HRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRW 259 (385)
T ss_pred ccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHH
Confidence 9999999999999999999999999999999843221111100 012234455555555
Q ss_pred cCCCCCeEEEEcCCCcEEEEecC--CeEEE----------EeeCCcccCCcEE--EEEECCCCCEEEEEeCCCeEEEEEc
Q 010362 405 FPKNPDHIVVCNKTSSIYIMTLQ--GQVVK----------SFSSGKREGGDFV--AACVSPKGEWIYCVGEDRNLYCFSH 470 (512)
Q Consensus 405 ~~~~~~~l~~~~~~~~i~~~~~~--~~~~~----------~~~~~~~~~~~~~--~~~~s~~g~~l~~g~~dg~i~iwd~ 470 (512)
.- +++++-+.++.|..|... +.... .+....-....+. ..++.|-++.|+.|...|.|++||+
T Consensus 260 ~g---d~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL 336 (385)
T KOG1034|consen 260 FG---DFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDL 336 (385)
T ss_pred Hh---hheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEEC
Confidence 53 788899999999999872 11111 1111111122333 4566788999999999999999999
Q ss_pred CCCeeEE--eccc--cCCCeEEEEEcCCCCeEEEEECCCeEEEec
Q 010362 471 QSGKLEH--LMKV--HEKDVIGVTHHPHRNLLATYGEDCTMKLWK 511 (512)
Q Consensus 471 ~~~~~~~--~~~~--h~~~v~~v~~~p~~~~l~s~~~dg~i~iW~ 511 (512)
.+..+.. ++.. ....|...+|+.|+.+|+..++|++|.-||
T Consensus 337 ~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwd 381 (385)
T KOG1034|consen 337 DNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWD 381 (385)
T ss_pred CCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEE
Confidence 9876632 2221 235789999999999999999999999997
No 136
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.93 E-value=9.4e-25 Score=193.21 Aligned_cols=221 Identities=23% Similarity=0.335 Sum_probs=179.6
Q ss_pred eEEEecCcCceEEEEECCC-CCEEEEEeCCCeEEEEEcCCCeeeccccccccceeeccCcceeEEEEcC-CCCeEEEEeC
Q 010362 206 HTIKFGTKSHAECARFSPD-GQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSR-DSEMLASGSQ 283 (512)
Q Consensus 206 ~~~~~~h~~~v~~~~~s~~-~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~-~~~~l~s~~~ 283 (512)
.++. ||...-..++|++. .-.|++|+.|++|++||+...... .....+...+.+|...|..++|++ +...|++++.
T Consensus 171 l~L~-gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~-~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~d 248 (422)
T KOG0264|consen 171 LRLK-GHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKE-DKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGD 248 (422)
T ss_pred eEEE-eecccccccccccccceeEeeccCCCcEEEEeccccccC-CccccceEEeecCCcceehhhccccchhhheeecC
Confidence 3454 88888888999994 457899999999999999765543 122345567889999999999999 5678999999
Q ss_pred CCeEEEEEccC--CeeeEEeccccccCeEEEEEec-CCCEEEEEeCCCcEEEEeCCCC-ceeEEeeCCccceeEEEEcCC
Q 010362 284 DGKIKVWRIRS--GQCLRRLERAHSEGVTSLVFSR-DGSQILSTSFDSTARIHGLKSG-KLLKEFRGHSSYVNDAIFTND 359 (512)
Q Consensus 284 dg~i~vwd~~~--~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~v~i~d~~~~-~~~~~~~~~~~~v~~~~~~~~ 359 (512)
|+.+.|||+++ .++..... .|.+.|.|++|+| ++..||+|+.|++|.+||+++. +++.++.+|...|.++.|+|.
T Consensus 249 d~~L~iwD~R~~~~~~~~~~~-ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh 327 (422)
T KOG0264|consen 249 DGKLMIWDTRSNTSKPSHSVK-AHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPH 327 (422)
T ss_pred CCeEEEEEcCCCCCCCccccc-ccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCC
Confidence 99999999995 44444444 8999999999999 6778899999999999999875 567899999999999999995
Q ss_pred -CCEEEEEeCCCcEEEEeCCCCceeeec----C-CC---CCCCCCCceeEEEEEcCCCCCeEEEEcCCCcEEEEecCCe
Q 010362 360 -GSRVVTASSDCTVKVWDLKSTDCLQTF----K-PP---PPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQ 429 (512)
Q Consensus 360 -~~~l~~~~~dg~i~iwd~~~~~~~~~~----~-~~---~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~ 429 (512)
...|++++.|+.+.+||+..-...+.- . ++ ....||...|..+.|+|..+-.+++...|+.+.||.....
T Consensus 328 ~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~~ 406 (422)
T KOG0264|consen 328 NETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAEN 406 (422)
T ss_pred CCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecccc
Confidence 457889999999999999753322210 0 01 1235788999999999999999999999999999998743
No 137
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.93 E-value=3.2e-24 Score=185.10 Aligned_cols=358 Identities=21% Similarity=0.257 Sum_probs=229.8
Q ss_pred ChHHHHHHHHHhcccCCCccccccCChhhHHHHHHHHHHhccccccCchHHHHHHHHHHHhhhhcCCCCCCCee------
Q 010362 110 QPERYLRLEHLLVRTYFDAHEAYQDSTKERRRAQIAQAIAAEVSVVPPSRLMALIGQALKWQQHQGLLPPGTQF------ 183 (512)
Q Consensus 110 ~~~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~rl~~l~~~~~~~~~~~~~~~~~~~~------ 183 (512)
.|..|..|...-+.-++-.-+.+++...+.|+ ..|..-++..-.||.+|+.+.-.+.....+
T Consensus 56 DpsaYe~lH~~~~gwPcLsfDVi~D~LG~eR~------------e~P~~~Ylv~gtQa~~~~~N~l~vlkl~nl~~t~~~ 123 (440)
T KOG0302|consen 56 DPSAYEMLHNFNSGWPCLSFDVIPDRLGDERT------------EFPHTAYLVAGTQALDAPDNELMVLKLSNLHKTRNP 123 (440)
T ss_pred CHHHHHHhhcccCCCcccceeeecCCCCcccc------------cCchHhhhhhhhhccccccCceEEEEeeeeecccCC
Confidence 34555555554444333444445554444433 345555555556777766543211100000
Q ss_pred eeccCcccccccccccCccccceEEEecCcCceEEEEECCCC--CEEEEEeCCCeEEEEEcCC--------Ceeeccccc
Q 010362 184 DLFRGTAAMKQDVEDMYPTTLSHTIKFGTKSHAECARFSPDG--QFLVSCSFDGFIEVWDYLS--------GKLKKDLQY 253 (512)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~--~~l~sg~~dg~i~iwd~~~--------~~~~~~~~~ 253 (512)
.-..+......+..+..|.--...+ +|.+.+..+.-++-| .+.|+-+..|.|.||++.. +-.......
T Consensus 124 ~~gd~~~~~eddedD~~P~~~~~~i--~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~ 201 (440)
T KOG0302|consen 124 NDGDGEDEEEDDEDDRKPQIEMKSI--PHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEF 201 (440)
T ss_pred ccCCCCCccccchhhcccccccccc--ccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCcccccccccc
Confidence 0011111222223333444333333 788888888887754 4566667899999999743 222333456
Q ss_pred cccceeeccCcceeEEEEcCC-CCeEEEEeCCCeEEEEEccCCeee---EEeccccccCeEEEEEecC-CCEEEEEeCCC
Q 010362 254 QADETFMMHDETVLCIEFSRD-SEMLASGSQDGKIKVWRIRSGQCL---RRLERAHSEGVTSLVFSRD-GSQILSTSFDS 328 (512)
Q Consensus 254 ~~~~~~~~h~~~v~~l~~s~~-~~~l~s~~~dg~i~vwd~~~~~~~---~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg 328 (512)
.+..++.+|...=..++|||- ...|++|..-+.|++|...+|.-. ..+. +|+..|..++|+|. ...|++|+.||
T Consensus 202 ~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~-gH~~SVEDLqWSptE~~vfaScS~Dg 280 (440)
T KOG0302|consen 202 RPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFT-GHTKSVEDLQWSPTEDGVFASCSCDG 280 (440)
T ss_pred CceEEecccCccceeeecccccccccccCccccceEeeeeccCceeecCcccc-ccccchhhhccCCccCceEEeeecCc
Confidence 677889999999999999992 335888888889999999887643 2233 69999999999995 56889999999
Q ss_pred cEEEEeCCCCc--eeEEeeCCccceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeecCCCCCCCCCCceeEEEEEcC
Q 010362 329 TARIHGLKSGK--LLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFP 406 (512)
Q Consensus 329 ~v~i~d~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 406 (512)
+|+|||++.+. .....+.|.+.|+-+.|+....+|++|+.||+++|||+|..+.- .+...+.-|..+|+++.|+|
T Consensus 281 sIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~---~pVA~fk~Hk~pItsieW~p 357 (440)
T KOG0302|consen 281 SIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSG---QPVATFKYHKAPITSIEWHP 357 (440)
T ss_pred eEEEEEecCCCccceeEeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCC---CcceeEEeccCCeeEEEecc
Confidence 99999999882 22334889999999999998889999999999999999975432 22223345778999999999
Q ss_pred CCCCeEEEEcCCCcEEEEecCCeEEEEeeCCcccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCeeEEeccccCCCe
Q 010362 407 KNPDHIVVCNKTSSIYIMTLQGQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDV 486 (512)
Q Consensus 407 ~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v 486 (512)
.....+++++.|..|.+||+.-..-..-.. .-...+ +-|+. .+++..-+ ....+
T Consensus 358 ~e~s~iaasg~D~QitiWDlsvE~D~ee~~---------------------~~a~~~---L~dlP-pQLLFVHq-GQke~ 411 (440)
T KOG0302|consen 358 HEDSVIAASGEDNQITIWDLSVEADEEEID---------------------QEAAEG---LQDLP-PQLLFVHQ-GQKEV 411 (440)
T ss_pred ccCceEEeccCCCcEEEEEeeccCChhhhc---------------------cccccc---hhcCC-ceeEEEec-chhHh
Confidence 888888888888888888876221000000 000000 00111 12222222 13568
Q ss_pred EEEEEcCC-CCeEEEEECCCeEEEecC
Q 010362 487 IGVTHHPH-RNLLATYGEDCTMKLWKP 512 (512)
Q Consensus 487 ~~v~~~p~-~~~l~s~~~dg~i~iW~~ 512 (512)
..+.||++ ..++++.+.|| +.||++
T Consensus 412 KevhWH~QiPG~lvsTa~dG-fnVfkt 437 (440)
T KOG0302|consen 412 KEVHWHRQIPGLLVSTAIDG-FNVFKT 437 (440)
T ss_pred hhheeccCCCCeEEEecccc-eeEEEe
Confidence 88999995 45888888898 566653
No 138
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.93 E-value=5.1e-24 Score=196.68 Aligned_cols=274 Identities=19% Similarity=0.310 Sum_probs=220.9
Q ss_pred ceEEEEECCCCCEEEEEeCCCeEEEEEcCCCeeeccccccccceeeccCcceeEEEEcCCCCeEEEEeCCCeEEEEEccC
Q 010362 215 HAECARFSPDGQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWRIRS 294 (512)
Q Consensus 215 ~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~vwd~~~ 294 (512)
.|..++|-|||..|+.+. +..+.+||.+.|....+ +++|...|.|++|+.||+.+|+|+.|..|.+|+..-
T Consensus 14 ci~d~afkPDGsqL~lAA-g~rlliyD~ndG~llqt--------LKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~kl 84 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAA-GSRLLVYDTSDGTLLQP--------LKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKL 84 (1081)
T ss_pred chheeEECCCCceEEEec-CCEEEEEeCCCcccccc--------cccccceEEEEEEccCCceeccCCCceeEEEecccc
Confidence 788999999999888776 56899999999987764 556999999999999999999999999999998543
Q ss_pred CeeeEEeccccccCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeeCCccceeEEEEcCCCCEEEEEeCCCcEEE
Q 010362 295 GQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKV 374 (512)
Q Consensus 295 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 374 (512)
+-+.+ ..|...|.|+.|+|-...+++++-. ..-+|........ ..+ ....+.+++|..||.+++.|-.||+|.+
T Consensus 85 -EG~Lk--YSH~D~IQCMsFNP~~h~LasCsLs-dFglWS~~qK~V~-K~k-ss~R~~~CsWtnDGqylalG~~nGTIsi 158 (1081)
T KOG1538|consen 85 -EGILK--YSHNDAIQCMSFNPITHQLASCSLS-DFGLWSPEQKSVS-KHK-SSSRIICCSWTNDGQYLALGMFNGTISI 158 (1081)
T ss_pred -cceee--eccCCeeeEeecCchHHHhhhcchh-hccccChhhhhHH-hhh-hheeEEEeeecCCCcEEEEeccCceEEe
Confidence 22333 3699999999999998899988753 4678876543222 222 2456889999999999999999999999
Q ss_pred EeCCCCceeeecCCCCCCCCCCceeEEEEEcCCC----CCeEEEEcCCCcEEEEecCCeEEEEeeCCcccCCcEEEEEEC
Q 010362 375 WDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKN----PDHIVVCNKTSSIYIMTLQGQVVKSFSSGKREGGDFVAACVS 450 (512)
Q Consensus 375 wd~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~----~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 450 (512)
-+- +++....+..+ .+...+|.+++|+|.. .+.+++.....++.++.+.|+.+..-... +-...|+.+-
T Consensus 159 RNk-~gEek~~I~Rp---gg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~Igk~r~L---~FdP~CisYf 231 (1081)
T KOG1538|consen 159 RNK-NGEEKVKIERP---GGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQIGKDRAL---NFDPCCISYF 231 (1081)
T ss_pred ecC-CCCcceEEeCC---CCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecceeecccccC---CCCchhheec
Confidence 863 34443344333 3567899999999874 35788999999999999998876533322 2345688999
Q ss_pred CCCCEEEEEeCCCeEEEEEcCCCeeEEeccccCCCeEEEEEcCCCCeEEEEECCCeEEEec
Q 010362 451 PKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPHRNLLATYGEDCTMKLWK 511 (512)
Q Consensus 451 ~~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~~~dg~i~iW~ 511 (512)
++|.|+..|+.|+.+.+|. +.|-.+.++......|+.|+.+|+++.++.|+.||+|.-|+
T Consensus 232 ~NGEy~LiGGsdk~L~~fT-R~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyN 291 (1081)
T KOG1538|consen 232 TNGEYILLGGSDKQLSLFT-RDGVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYN 291 (1081)
T ss_pred cCCcEEEEccCCCceEEEe-ecCeEEeeccccceeEEEEEEccCCceEEEEEccCeeehhh
Confidence 9999999999999999997 56777778777788999999999999999999999998765
No 139
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.93 E-value=8.7e-24 Score=178.92 Aligned_cols=282 Identities=19% Similarity=0.277 Sum_probs=211.7
Q ss_pred eEEEEECCCCCEEEEEeCCCeEEEEEcCCCeeec----cccccccceee-ccCcceeEEEEc-------CCCCeEEEEeC
Q 010362 216 AECARFSPDGQFLVSCSFDGFIEVWDYLSGKLKK----DLQYQADETFM-MHDETVLCIEFS-------RDSEMLASGSQ 283 (512)
Q Consensus 216 v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~----~~~~~~~~~~~-~h~~~v~~l~~s-------~~~~~l~s~~~ 283 (512)
...+.|||||..|++-+.|..+.+|++...-... .........++ .....|...+|- |+..++++.+.
T Consensus 52 ~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr 131 (406)
T KOG2919|consen 52 LKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSR 131 (406)
T ss_pred hccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccc
Confidence 3457899999999999999999999974321111 11111111111 134567777775 57789999999
Q ss_pred CCeEEEEEccCCeeeEEecc-ccc---cCeEEEEEecCCCEEEEEeCCCcEEEEeC-CCCceeEE---e----eCCccce
Q 010362 284 DGKIKVWRIRSGQCLRRLER-AHS---EGVTSLVFSRDGSQILSTSFDSTARIHGL-KSGKLLKE---F----RGHSSYV 351 (512)
Q Consensus 284 dg~i~vwd~~~~~~~~~~~~-~~~---~~i~~~~~~~~~~~l~~~~~dg~v~i~d~-~~~~~~~~---~----~~~~~~v 351 (512)
+.-|++||..+|+....+.. .|. ....+++|+|||.+|++|. ...|+++|+ +.|.-... + .+..+.+
T Consensus 132 ~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGy-krcirvFdt~RpGr~c~vy~t~~~~k~gq~gii 210 (406)
T KOG2919|consen 132 DQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGY-KRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGII 210 (406)
T ss_pred cCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecc-cceEEEeeccCCCCCCcchhhhhccccccccee
Confidence 99999999999998777652 122 3567999999999998775 789999999 55532211 1 1236678
Q ss_pred eEEEEcC-CCCEEEEEeCCCcEEEEeCCCCceeeecCCCCCCCCCCceeEEEEEcCCCCCeEEEEcCCCcEEEEecCC--
Q 010362 352 NDAIFTN-DGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQG-- 428 (512)
Q Consensus 352 ~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~~~~~~-- 428 (512)
.+++|+| +...++.++...++-||.-..+.+...+- +|.+.|+.+.|.+++..++.-+..+..|..||++.
T Consensus 211 sc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llg------gh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~ 284 (406)
T KOG2919|consen 211 SCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLG------GHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSR 284 (406)
T ss_pred eeeeccCCCCcceeeecccceeeeEecCCCCceeeec------ccCCCeeeEEeccCcCeecccccCCCeEEEEeehhcc
Confidence 9999999 44588999988888888877776665543 78899999999999976666666789999999993
Q ss_pred eEEEEeeCCcccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCC-CeeEEeccccCCCeEEEEEcCCCCeEEEEECC
Q 010362 429 QVVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQS-GKLEHLMKVHEKDVIGVTHHPHRNLLATYGED 504 (512)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~dg~i~iwd~~~-~~~~~~~~~h~~~v~~v~~~p~~~~l~s~~~d 504 (512)
.++..+..+......-.-....|+|++|++|+.||.|++||+++ |.....+..|+..++.++++|--.++|+++..
T Consensus 285 ~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpilatssGq 361 (406)
T KOG2919|consen 285 DPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILATSSGQ 361 (406)
T ss_pred chhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccccccccccceecCcccceeeeccCc
Confidence 34444444333233444556689999999999999999999998 78788888999999999999998888888753
No 140
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.93 E-value=7e-26 Score=210.79 Aligned_cols=234 Identities=21% Similarity=0.334 Sum_probs=206.8
Q ss_pred cCcCceEEEEECCCCCEEEEEeCCCeEEEEEcCCCeeeccccccccceeeccCcceeEEEEcCCCCeEEEEeCCCeEEEE
Q 010362 211 GTKSHAECARFSPDGQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQDGKIKVW 290 (512)
Q Consensus 211 ~h~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~vw 290 (512)
.|...|.|+..-..++.+++|+.|..+-+|.+....... .+.+|..+|.++.|+++..+|++|+.+|+|++|
T Consensus 26 ~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~--------S~~~hespIeSl~f~~~E~LlaagsasgtiK~w 97 (825)
T KOG0267|consen 26 AHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAIT--------SLTGHESPIESLTFDTSERLLAAGSASGTIKVW 97 (825)
T ss_pred hhhhhhceeeeeccceeeccCCCceeeccccccCCchhh--------eeeccCCcceeeecCcchhhhcccccCCceeee
Confidence 688889999887788999999999999999876543332 367799999999999999999999999999999
Q ss_pred EccCCeeeEEeccccccCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeeCCccceeEEEEcCCCCEEEEEeCCC
Q 010362 291 RIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDC 370 (512)
Q Consensus 291 d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 370 (512)
|++.++.++++. +|...+.++.|+|-+.+++.|+.|+.+++||++...+...+.+|...|..+.|+|+|.+++.++.|.
T Consensus 98 DleeAk~vrtLt-gh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~ 176 (825)
T KOG0267|consen 98 DLEEAKIVRTLT-GHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDN 176 (825)
T ss_pred ehhhhhhhhhhh-ccccCcceeeeccceEEeccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCCcc
Confidence 999999999887 9999999999999999999999999999999998999999999999999999999999999999999
Q ss_pred cEEEEeCCCCceeeecCCCCCCCCCCceeEEEEEcCCCCCeEEEEcCCCcEEEEecCCeEEEEeeCCcccCCcEEEEEEC
Q 010362 371 TVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQVVKSFSSGKREGGDFVAACVS 450 (512)
Q Consensus 371 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 450 (512)
+++|||...|+....|.. | .+.+..+.++
T Consensus 177 tvki~d~~agk~~~ef~~------~---------------------------------------------e~~v~sle~h 205 (825)
T KOG0267|consen 177 TVKIWDLTAGKLSKEFKS------H---------------------------------------------EGKVQSLEFH 205 (825)
T ss_pred eeeeeccccccccccccc------c---------------------------------------------cccccccccC
Confidence 999999998887766652 2 2334455577
Q ss_pred CCCCEEEEEeCCCeEEEEEcCCCeeEEeccccCCCeEEEEEcCCCCeEEEEECC
Q 010362 451 PKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPHRNLLATYGED 504 (512)
Q Consensus 451 ~~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~~~d 504 (512)
|..-+++.|+.|++|++||+++-+.+.........|.+.+|+|++..+++|..+
T Consensus 206 p~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~~~~v~~~~fn~~~~~~~~G~q~ 259 (825)
T KOG0267|consen 206 PLEVLLAPGSSDRTVRFWDLETFEVISSGKPETDGVRSLAFNPDGKIVLSGEQI 259 (825)
T ss_pred chhhhhccCCCCceeeeeccceeEEeeccCCccCCceeeeecCCceeeecCchh
Confidence 777788999999999999999988888887778899999999999988887654
No 141
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.93 E-value=8.3e-24 Score=196.28 Aligned_cols=256 Identities=23% Similarity=0.323 Sum_probs=203.8
Q ss_pred cCcccccccccccCccccce-EEEecCcCceEE-EEECC-CCCEEEEEeCCCeEEEEEcCCCeeeccccccccceeeccC
Q 010362 187 RGTAAMKQDVEDMYPTTLSH-TIKFGTKSHAEC-ARFSP-DGQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHD 263 (512)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~-~~~~~h~~~v~~-~~~s~-~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~ 263 (512)
.+..+....+|......... ..-.+|.+-|.+ ++|-+ ++-.+++|+.|++|.+|........ .++.+|.
T Consensus 30 s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~--------~~LkgH~ 101 (745)
T KOG0301|consen 30 SGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEPL--------YTLKGHK 101 (745)
T ss_pred ecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceEEEEecCCCCch--------hhhhccc
Confidence 33444455566554443332 222378888887 88886 5556999999999999998776544 4677899
Q ss_pred cceeEEEEcCCCCeEEEEeCCCeEEEEEccCCeeeEEeccccccCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEE
Q 010362 264 ETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKE 343 (512)
Q Consensus 264 ~~v~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~ 343 (512)
..|.|++...++. +++||.|.++++|.. +++...+. +|+..|.++...|++ .+++|+.|.+|++|. .++.+++
T Consensus 102 snVC~ls~~~~~~-~iSgSWD~TakvW~~--~~l~~~l~-gH~asVWAv~~l~e~-~~vTgsaDKtIklWk--~~~~l~t 174 (745)
T KOG0301|consen 102 SNVCSLSIGEDGT-LISGSWDSTAKVWRI--GELVYSLQ-GHTASVWAVASLPEN-TYVTGSADKTIKLWK--GGTLLKT 174 (745)
T ss_pred cceeeeecCCcCc-eEecccccceEEecc--hhhhcccC-CcchheeeeeecCCC-cEEeccCcceeeecc--CCchhhh
Confidence 9999999888887 999999999999965 55566665 999999999999988 889999999999997 4889999
Q ss_pred eeCCccceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeecCCCCCCCCCCceeEEEEEcCCCCCeEEEEcCCCcEEE
Q 010362 344 FRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYI 423 (512)
Q Consensus 344 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~ 423 (512)
|.+|...|+.+++-+++ .+++++.||.|+.|++ ++.++.... +|..-++++...+.+ ..+++++.|+++++
T Consensus 175 f~gHtD~VRgL~vl~~~-~flScsNDg~Ir~w~~-~ge~l~~~~------ghtn~vYsis~~~~~-~~Ivs~gEDrtlri 245 (745)
T KOG0301|consen 175 FSGHTDCVRGLAVLDDS-HFLSCSNDGSIRLWDL-DGEVLLEMH------GHTNFVYSISMALSD-GLIVSTGEDRTLRI 245 (745)
T ss_pred hccchhheeeeEEecCC-CeEeecCCceEEEEec-cCceeeeee------ccceEEEEEEecCCC-CeEEEecCCceEEE
Confidence 99999999999999875 4899999999999999 666666654 688899999966655 89999999999999
Q ss_pred EecCCeEEEEeeCCcccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcC
Q 010362 424 MTLQGQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQ 471 (512)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~dg~i~iwd~~ 471 (512)
|+.. .....+.. .+..+.++++-++|. |++|++||.|+||...
T Consensus 246 W~~~-e~~q~I~l---PttsiWsa~~L~NgD-Ivvg~SDG~VrVfT~~ 288 (745)
T KOG0301|consen 246 WKKD-ECVQVITL---PTTSIWSAKVLLNGD-IVVGGSDGRVRVFTVD 288 (745)
T ss_pred eecC-ceEEEEec---CccceEEEEEeeCCC-EEEeccCceEEEEEec
Confidence 9988 22222222 234578888888887 6788889999999765
No 142
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=3.5e-24 Score=188.85 Aligned_cols=252 Identities=19% Similarity=0.295 Sum_probs=192.1
Q ss_pred EEEEECC-------CCCEEEEEeCCCeEEEEEcCCCeeec-ccc------------ccccceeeccCcceeEEEEcCC-C
Q 010362 217 ECARFSP-------DGQFLVSCSFDGFIEVWDYLSGKLKK-DLQ------------YQADETFMMHDETVLCIEFSRD-S 275 (512)
Q Consensus 217 ~~~~~s~-------~~~~l~sg~~dg~i~iwd~~~~~~~~-~~~------------~~~~~~~~~h~~~v~~l~~s~~-~ 275 (512)
.|++|.. .|+++|.|+.|..|.|||+.-..... .+. ......-.+|+..|..++|+.+ .
T Consensus 177 LC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~ 256 (463)
T KOG0270|consen 177 LCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFR 256 (463)
T ss_pred hhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccc
Confidence 5666643 47899999999999999985321110 000 0011123469999999999985 4
Q ss_pred CeEEEEeCCCeEEEEEccCCeeeEEeccccccCeEEEEEecC-CCEEEEEeCCCcEEEEeCCCCcee-EEeeCCccceeE
Q 010362 276 EMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRD-GSQILSTSFDSTARIHGLKSGKLL-KEFRGHSSYVND 353 (512)
Q Consensus 276 ~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~v~i~d~~~~~~~-~~~~~~~~~v~~ 353 (512)
+.||+||.|.+|++||+.+|++..++. .|...|.++.|+|. ...|++|+.|++|.+.|.+..... ..++ ..+.|-.
T Consensus 257 nVLaSgsaD~TV~lWD~~~g~p~~s~~-~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk-~~g~VEk 334 (463)
T KOG0270|consen 257 NVLASGSADKTVKLWDVDTGKPKSSIT-HHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWK-FDGEVEK 334 (463)
T ss_pred eeEEecCCCceEEEEEcCCCCcceehh-hcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEE-eccceEE
Confidence 689999999999999999999999997 79999999999994 678999999999999999853222 2232 3466899
Q ss_pred EEEcCCC-CEEEEEeCCCcEEEEeCCCC-ceeeecCCCCCCCCCCceeEEEEEcCCCCCeEEEEcCCCcEEEEecCCeEE
Q 010362 354 AIFTNDG-SRVVTASSDCTVKVWDLKST-DCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQVV 431 (512)
Q Consensus 354 ~~~~~~~-~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~ 431 (512)
++|.|.. ..++++..||+++-+|+|.. +++.+++ .|..+|.++.+++..+.++++++.++.+.+|++.+...
T Consensus 335 v~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~------AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~ 408 (463)
T KOG0270|consen 335 VAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLK------AHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSP 408 (463)
T ss_pred EEecCCCceeEEEecCCceEEeeecCCCCCceeEEE------eccCCcceEEecCCCCcceeeccccceEEEEeecCCCC
Confidence 9999854 56788889999999999986 5566554 68899999999999999999999999999999985544
Q ss_pred EEeeCCcccCCcEEEEEECCCCC-EEEEEeCCCeEEEEEcCCCeeE
Q 010362 432 KSFSSGKREGGDFVAACVSPKGE-WIYCVGEDRNLYCFSHQSGKLE 476 (512)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~s~~g~-~l~~g~~dg~i~iwd~~~~~~~ 476 (512)
+....+...-+...|.++.|+-. +++.|+..+.+++||+.+...+
T Consensus 409 ~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V 454 (463)
T KOG0270|consen 409 KSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPV 454 (463)
T ss_pred cccccccccccceeecccCCCcceEEEecCccceEEEeecccChhH
Confidence 33333333233355667777654 5677778889999999876654
No 143
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=4.4e-23 Score=197.46 Aligned_cols=242 Identities=18% Similarity=0.276 Sum_probs=201.9
Q ss_pred ccCcceeEEEEcCCCCeEEEEeCCCeEEEEEccCC-eeeEEeccccccCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCc
Q 010362 261 MHDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSG-QCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGK 339 (512)
Q Consensus 261 ~h~~~v~~l~~s~~~~~l~s~~~dg~i~vwd~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~ 339 (512)
.|...-+.++|.|+|..|++|+.||.|++|+..+. +....+. .+...|.+++.. +.+|++|+.+++|.+|.+.+++
T Consensus 11 aht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~-~~g~~v~~ia~~--s~~f~~~s~~~tv~~y~fps~~ 87 (933)
T KOG1274|consen 11 AHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETID-ISGELVSSIACY--SNHFLTGSEQNTVLRYKFPSGE 87 (933)
T ss_pred hccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhh-ccCceeEEEeec--ccceEEeeccceEEEeeCCCCC
Confidence 48899999999999999999999999999998766 3333333 366777777764 5599999999999999998887
Q ss_pred eeEEeeCCccceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeecCCCCCCCCCCceeEEEEEcCCCCCeEEEEcCCC
Q 010362 340 LLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTS 419 (512)
Q Consensus 340 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~ 419 (512)
.-..+....-++++++++.+|++++.|+.|-.|++-++.+......+. +|..+|.++.++|.+ .++++.+.||
T Consensus 88 ~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lr------gh~apVl~l~~~p~~-~fLAvss~dG 160 (933)
T KOG1274|consen 88 EDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLR------GHDAPVLQLSYDPKG-NFLAVSSCDG 160 (933)
T ss_pred ccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeec------ccCCceeeeeEcCCC-CEEEEEecCc
Confidence 665566666789999999999999999999999999998877666654 788999999999998 9999999999
Q ss_pred cEEEEecCCeEEEE-eeCCcc----c-CCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCeeEEeccc--cCCCeEEEEE
Q 010362 420 SIYIMTLQGQVVKS-FSSGKR----E-GGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKV--HEKDVIGVTH 491 (512)
Q Consensus 420 ~i~~~~~~~~~~~~-~~~~~~----~-~~~~~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~--h~~~v~~v~~ 491 (512)
.+++|+++.+.+.. +..... . ...+..++|+|+|..+++.+.|+.|.+|+..+.+....+.. +...+++++|
T Consensus 161 ~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~w 240 (933)
T KOG1274|consen 161 KVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQW 240 (933)
T ss_pred eEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEE
Confidence 99999998554322 221111 1 34467899999998899999999999999999998887753 4455999999
Q ss_pred cCCCCeEEEEECCCeEEEecC
Q 010362 492 HPHRNLLATYGEDCTMKLWKP 512 (512)
Q Consensus 492 ~p~~~~l~s~~~dg~i~iW~~ 512 (512)
+|+|.|||+++.||.|.|||.
T Consensus 241 sPnG~YiAAs~~~g~I~vWnv 261 (933)
T KOG1274|consen 241 SPNGKYIAASTLDGQILVWNV 261 (933)
T ss_pred cCCCcEEeeeccCCcEEEEec
Confidence 999999999999999999983
No 144
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=8.4e-23 Score=180.96 Aligned_cols=285 Identities=16% Similarity=0.232 Sum_probs=216.8
Q ss_pred CCCCCeeeeccCccccc-ccccccCccccceEEEecCcCceEEEEECCCCC-EEEEEeCCCeEEEEEcCCCeeecccccc
Q 010362 177 LPPGTQFDLFRGTAAMK-QDVEDMYPTTLSHTIKFGTKSHAECARFSPDGQ-FLVSCSFDGFIEVWDYLSGKLKKDLQYQ 254 (512)
Q Consensus 177 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~-~l~sg~~dg~i~iwd~~~~~~~~~~~~~ 254 (512)
||+.....+..|..... .-..|-......+.+. --+.+|.+++|.|+|. .+++++.....+.||+.+.+....-.
T Consensus 221 FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~-l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~-- 297 (514)
T KOG2055|consen 221 FHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIH-LEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKP-- 297 (514)
T ss_pred ecCCCceEEEecCCCcEEEEEecCccChhheeee-eccCccceeeecCCCceEEEecccceEEEEeeccccccccccC--
Confidence 45555544444433211 1112333444566665 4567899999999999 89999999999999998877543221
Q ss_pred ccceeecc-CcceeEEEEcCCCCeEEEEeCCCeEEEEEccCCeeeEEeccccccCeEEEEEecCCCEEEEEeCCCcEEEE
Q 010362 255 ADETFMMH-DETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIH 333 (512)
Q Consensus 255 ~~~~~~~h-~~~v~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~i~ 333 (512)
..++ ...+.....+|++++|+..+..|.|.+....+++.+.++. ..+.|..++|+.+++.|++++.+|.|++|
T Consensus 298 ----~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~K--ieG~v~~~~fsSdsk~l~~~~~~GeV~v~ 371 (514)
T KOG2055|consen 298 ----PYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFK--IEGVVSDFTFSSDSKELLASGGTGEVYVW 371 (514)
T ss_pred ----CCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheee--eccEEeeEEEecCCcEEEEEcCCceEEEE
Confidence 1223 3457788899999999999999999999999999998886 67889999999999999999999999999
Q ss_pred eCCCCceeEEeeCCcc-ceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeecCCCCCCCCCCceeEEEEEcCCCCCeE
Q 010362 334 GLKSGKLLKEFRGHSS-YVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHI 412 (512)
Q Consensus 334 d~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l 412 (512)
|++...++..+....+ .-++++.++++.+|++|+..|.|.|||..+...-..-++...+......|+++.|+|+. .++
T Consensus 372 nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~-qiL 450 (514)
T KOG2055|consen 372 NLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDA-QIL 450 (514)
T ss_pred ecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcch-hhh
Confidence 9999999988875433 34677888999999999999999999977644333333444444566789999999998 777
Q ss_pred EEEcC--CCcEEEEecCCeE-EEEeeCCcccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcC
Q 010362 413 VVCNK--TSSIYIMTLQGQV-VKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQ 471 (512)
Q Consensus 413 ~~~~~--~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~dg~i~iwd~~ 471 (512)
+.++. ...+++.-+.... ...+......-+.++|++|||.|.+++.|..+|.+.+|.+.
T Consensus 451 AiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 451 AIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred hhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence 76664 4567777766433 33344444445678999999999999999999999999864
No 145
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.92 E-value=7e-24 Score=194.68 Aligned_cols=138 Identities=20% Similarity=0.350 Sum_probs=109.2
Q ss_pred EEecCcCceEEEEECC-CCCEEEEEeCCCeEEEEEcCCCeeeccccccccceeeccCcceeEEEEcCCCCeEEEEeCCCe
Q 010362 208 IKFGTKSHAECARFSP-DGQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQDGK 286 (512)
Q Consensus 208 ~~~~h~~~v~~~~~s~-~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~ 286 (512)
+..+|.+.|+.+.|+| +..+||+||.|..|+||.+..+-.. .+ ..+...+.+..-.|-|+.|+|...-|+..+..|+
T Consensus 74 ~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q-~L-Sape~~~g~~~~~vE~l~fHpTaDgil~s~a~g~ 151 (1012)
T KOG1445|consen 74 ILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQ-KL-SAPEIDVGGGNVIVECLRFHPTADGILASGAHGS 151 (1012)
T ss_pred eeecccceeeccCccccchhhhhcccCCCeeEEEecCCCccc-cc-CCcceeecCCceEEEEeecccCcCceEEeccCce
Confidence 3359999999999999 5668999999999999999744322 22 1222334445567899999996655555566899
Q ss_pred EEEEEccCCeeeEEeccccccCeEEEEEecCCCEEEEEeCCCcEEEEeCCC-CceeEEeeCCc
Q 010362 287 IKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKS-GKLLKEFRGHS 348 (512)
Q Consensus 287 i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~i~d~~~-~~~~~~~~~~~ 348 (512)
++|||+.+++.+..+. +|...|.+..|+.||+.+++++.|..|+|||.+. ++.+....+|.
T Consensus 152 v~i~D~stqk~~~el~-~h~d~vQSa~WseDG~llatscKdkqirifDPRa~~~piQ~te~H~ 213 (1012)
T KOG1445|consen 152 VYITDISTQKTAVELS-GHTDKVQSADWSEDGKLLATSCKDKQIRIFDPRASMEPIQTTEGHG 213 (1012)
T ss_pred EEEEEcccCceeeccc-CCchhhhccccccCCceEeeecCCcceEEeCCccCCCccccccccc
Confidence 9999999999999887 8999999999999999999999999999999874 34455445443
No 146
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=7.2e-23 Score=177.68 Aligned_cols=298 Identities=13% Similarity=0.139 Sum_probs=217.7
Q ss_pred cCcCceEEEEECCCCCEEEEEeCCCeEEEEEcCCCeeecccccccccee-eccCcceeEEEEcCCCCeEEEEeCCCeEEE
Q 010362 211 GTKSHAECARFSPDGQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETF-MMHDETVLCIEFSRDSEMLASGSQDGKIKV 289 (512)
Q Consensus 211 ~h~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~h~~~v~~l~~s~~~~~l~s~~~dg~i~v 289 (512)
+|.+.|.++.||.++++||+|+.|..+++|+++..-..+. ..+.... ..|...|.|++|...+..+.+|+.+++|..
T Consensus 54 ~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~--~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~ 131 (609)
T KOG4227|consen 54 EHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKT--PKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIK 131 (609)
T ss_pred hhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcC--CCCceeccCccccceEEEEEccCCeeEecCCCcceeEe
Confidence 9999999999999999999999999999999864322111 1111111 226689999999999999999999999999
Q ss_pred EEccCCeeeEEecc-ccccCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCc-eeEE--eeCCccceeEEEEcCCC-CEEE
Q 010362 290 WRIRSGQCLRRLER-AHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGK-LLKE--FRGHSSYVNDAIFTNDG-SRVV 364 (512)
Q Consensus 290 wd~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~-~~~~--~~~~~~~v~~~~~~~~~-~~l~ 364 (512)
.|+++.+.+..+.. ...+.|..+..+|..+.|++.+.++.|.+||.+... .+.. .........++.|+|.. .+|+
T Consensus 132 HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~ 211 (609)
T KOG4227|consen 132 HDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALIL 211 (609)
T ss_pred eecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCceeEE
Confidence 99999988877752 123589999999999999999999999999998664 2221 22234557788899954 4677
Q ss_pred EEeCCCcEEEEeCCCCce-eeecCCCCCCCCCCceeEEEEEcCCCCCeEEEEcCCCcEEEEecCCeEEEEeeCCcccCC-
Q 010362 365 TASSDCTVKVWDLKSTDC-LQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQVVKSFSSGKREGG- 442 (512)
Q Consensus 365 ~~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~- 442 (512)
+++..+-+-+||.+.... +........+......-.++.|+|.+ ..+++-.....-.+||+-.+.+..+...+...+
T Consensus 212 ~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G-~Q~msiRR~~~P~~~D~~S~R~~V~k~D~N~~GY 290 (609)
T KOG4227|consen 212 VNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSG-NQFMSIRRGKCPLYFDFISQRCFVLKSDHNPNGY 290 (609)
T ss_pred eccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCC-CeehhhhccCCCEEeeeecccceeEeccCCCCcc
Confidence 888888899999986532 11111111222223344778999998 445555555555667777655554444433322
Q ss_pred ----cEEEEEECCCCCEEEEEeCCCeEEEEEcCCC-----------------------eeEEeccccCCCeEEEEEcCCC
Q 010362 443 ----DFVAACVSPKGEWIYCVGEDRNLYCFSHQSG-----------------------KLEHLMKVHEKDVIGVTHHPHR 495 (512)
Q Consensus 443 ----~~~~~~~s~~g~~l~~g~~dg~i~iwd~~~~-----------------------~~~~~~~~h~~~v~~v~~~p~~ 495 (512)
.+.++||..|- -+++|+.+-.|++|.+... +...++++|.+.++.|.|+|..
T Consensus 291 ~N~~T~KS~~F~~D~-~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H~ 369 (609)
T KOG4227|consen 291 CNIKTIKSMTFIDDY-TVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQHN 369 (609)
T ss_pred eeeeeeeeeeeecce-eeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccceeecCCc
Confidence 34456665444 4999999999999987521 1345678999999999999999
Q ss_pred CeEEEEECCCeEEEecC
Q 010362 496 NLLATYGEDCTMKLWKP 512 (512)
Q Consensus 496 ~~l~s~~~dg~i~iW~~ 512 (512)
.+|++.|..+.++||.|
T Consensus 370 ~~l~SSGVE~~~KlWS~ 386 (609)
T KOG4227|consen 370 NLLVSSGVENSFKLWSD 386 (609)
T ss_pred ceEeccchhhheecccc
Confidence 99999999999999975
No 147
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.91 E-value=1.2e-23 Score=187.93 Aligned_cols=239 Identities=17% Similarity=0.306 Sum_probs=199.5
Q ss_pred CcCceEEEEECCCCCEEEEEeCCCeEEEEEcCCCeeeccccccccceeeccCcceeEEEEcCCCCeEEEEeCCCeEEEEE
Q 010362 212 TKSHAECARFSPDGQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWR 291 (512)
Q Consensus 212 h~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~vwd 291 (512)
-..-|.++.+.|||+.|++|+.-.++.|||+......-... +..-.-....++.+||.+..++|..||.|.|||
T Consensus 464 rdnyiRSckL~pdgrtLivGGeastlsiWDLAapTprikae------ltssapaCyALa~spDakvcFsccsdGnI~vwD 537 (705)
T KOG0639|consen 464 RDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAE------LTSSAPACYALAISPDAKVCFSCCSDGNIAVWD 537 (705)
T ss_pred cccceeeeEecCCCceEEeccccceeeeeeccCCCcchhhh------cCCcchhhhhhhcCCccceeeeeccCCcEEEEE
Confidence 34567889999999999999999999999997655332211 122335678899999999999999999999999
Q ss_pred ccCCeeeEEeccccccCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeeCCccceeEEEEcCCCCEEEEEeCCCc
Q 010362 292 IRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCT 371 (512)
Q Consensus 292 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 371 (512)
+.+...++.+. +|+..+.|+..++||..|.+|+-|++|+.||+++++.+.... ..+.|.++.++|.+.+++.|-.++.
T Consensus 538 Lhnq~~Vrqfq-GhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqhd-F~SQIfSLg~cP~~dWlavGMens~ 615 (705)
T KOG0639|consen 538 LHNQTLVRQFQ-GHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHD-FSSQIFSLGYCPTGDWLAVGMENSN 615 (705)
T ss_pred cccceeeeccc-CCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhhh-hhhhheecccCCCccceeeecccCc
Confidence 99999999997 999999999999999999999999999999999987766543 4567999999999999999999999
Q ss_pred EEEEeCCCCceeeecCCCCCCCCCCceeEEEEEcCCCCCeEEEEcCCCcEEEEecC-CeEEEEeeCCcccCCcEEEEEEC
Q 010362 372 VKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQ-GQVVKSFSSGKREGGDFVAACVS 450 (512)
Q Consensus 372 i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~s 450 (512)
+.+-.....+..+ +.-|+..|.++.|.+.+ ..+++.+.|..+-.|... |..+..... ...|.++.+|
T Consensus 616 vevlh~skp~kyq-------lhlheScVLSlKFa~cG-kwfvStGkDnlLnawrtPyGasiFqskE----~SsVlsCDIS 683 (705)
T KOG0639|consen 616 VEVLHTSKPEKYQ-------LHLHESCVLSLKFAYCG-KWFVSTGKDNLLNAWRTPYGASIFQSKE----SSSVLSCDIS 683 (705)
T ss_pred EEEEecCCcccee-------ecccccEEEEEEecccC-ceeeecCchhhhhhccCccccceeeccc----cCcceeeeec
Confidence 8887765433222 22478899999999998 899999999999999987 555544433 4569999999
Q ss_pred CCCCEEEEEeCCCeEEEEEc
Q 010362 451 PKGEWIYCVGEDRNLYCFSH 470 (512)
Q Consensus 451 ~~g~~l~~g~~dg~i~iwd~ 470 (512)
.|.+||++|+.|..-.+|.+
T Consensus 684 ~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 684 FDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred cCceEEEecCCCcceEEEEE
Confidence 99999999999988888764
No 148
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.91 E-value=4.1e-25 Score=205.71 Aligned_cols=223 Identities=26% Similarity=0.511 Sum_probs=195.0
Q ss_pred CCCEEEEEeCCCeEEEEEcCCCeeeccccccccceeeccCcceeEEEEcCCCCeEEEEeCCCeEEEEEccCCeeeEEecc
Q 010362 224 DGQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLER 303 (512)
Q Consensus 224 ~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~ 303 (512)
.+.+++.+..+-.+++||... +..|...|.|+..-..++.+++|+.|..+-+|.+.....+..+.
T Consensus 3 ~~~~~m~~~~~t~Lr~~~~~~--------------~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~- 67 (825)
T KOG0267|consen 3 GMEFLMKTKRATKLRVWDTRE--------------FVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLT- 67 (825)
T ss_pred cccccceeeeeeccccccchh--------------hhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhheee-
Confidence 344455555566777887543 22388999999987788999999999999999988777777776
Q ss_pred ccccCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeeCCccceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCcee
Q 010362 304 AHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCL 383 (512)
Q Consensus 304 ~~~~~i~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 383 (512)
+|..+|.++.|+++..+|++|+.+|+|++||++.++.++++.+|...+.++.|+|-+.+++.|+.|+.+++||.+...|.
T Consensus 68 ~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~ 147 (825)
T KOG0267|consen 68 GHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCS 147 (825)
T ss_pred ccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCce
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999966555
Q ss_pred eecCCCCCCCCCCceeEEEEEcCCCCCeEEEEcCCCcEEEEecCCeEEEEeeCCcccCCcEEEEEECCCCCEEEEEeCCC
Q 010362 384 QTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDR 463 (512)
Q Consensus 384 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~dg 463 (512)
..+.. +...+..+.|+|+|++++.|++|.
T Consensus 148 ~~~~s---------------------------------------------------~~~vv~~l~lsP~Gr~v~~g~ed~ 176 (825)
T KOG0267|consen 148 HTYKS---------------------------------------------------HTRVVDVLRLSPDGRWVASGGEDN 176 (825)
T ss_pred eeecC---------------------------------------------------CcceeEEEeecCCCceeeccCCcc
Confidence 55431 123467889999999999999999
Q ss_pred eEEEEEcCCCeeEEeccccCCCeEEEEEcCCCCeEEEEECCCeEEEecC
Q 010362 464 NLYCFSHQSGKLEHLMKVHEKDVIGVTHHPHRNLLATYGEDCTMKLWKP 512 (512)
Q Consensus 464 ~i~iwd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~~~dg~i~iW~~ 512 (512)
.+.|||...|+++..+..|.+.+.++.|+|..-++++||.|++|++||.
T Consensus 177 tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dl 225 (825)
T KOG0267|consen 177 TVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDL 225 (825)
T ss_pred eeeeecccccccccccccccccccccccCchhhhhccCCCCceeeeecc
Confidence 9999999999999999999999999999999999999999999999984
No 149
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.91 E-value=4.8e-23 Score=183.93 Aligned_cols=265 Identities=18% Similarity=0.257 Sum_probs=207.3
Q ss_pred ceEEEEECCCCCE-EEEEeCCCeEEEEEcCCCeeeccccccccceeeccCcceeEEEEcCCCCeEEEEeCCCeEEEEEcc
Q 010362 215 HAECARFSPDGQF-LVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWRIR 293 (512)
Q Consensus 215 ~v~~~~~s~~~~~-l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~vwd~~ 293 (512)
.+.++.|+....+ +|+.+.|..+++|.-. |+ ...++ ..... ....-.|++......++++|+..++|+|||++
T Consensus 36 g~~s~~w~~~n~lvvas~~gdk~~~~~~K~-g~-~~~Vp--~~~k~--~gd~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~ 109 (673)
T KOG4378|consen 36 GDFSFNWQRRNFLVVASMAGDKVMRIKEKD-GK-TPEVP--RVRKL--TGDNAFCVACASQSLYEISGGQSGCVKIWDLR 109 (673)
T ss_pred cceeeeccccceEEEeecCCceeEEEeccc-CC-CCccc--eeecc--ccchHHHHhhhhcceeeeccCcCceeeehhhH
Confidence 3889999887642 3334568889999633 33 11111 11111 12244555555556899999999999999999
Q ss_pred CCeeeEEeccccccCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeeCC-ccceeEEEEcCCCCE-EEEEeCCCc
Q 010362 294 SGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRGH-SSYVNDAIFTNDGSR-VVTASSDCT 371 (512)
Q Consensus 294 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~-~~~v~~~~~~~~~~~-l~~~~~dg~ 371 (512)
...+.+.+ ..|...|+++.++-...+||+++..|.|.+..+.++....+|... ...|.-+.|+|..+. |.+++.+|.
T Consensus 110 ~kl~hr~l-kdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~ 188 (673)
T KOG4378|consen 110 AKLIHRFL-KDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGA 188 (673)
T ss_pred HHHHhhhc-cCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCe
Confidence 55555555 599999999999999999999999999999999999888888755 345668999997664 567899999
Q ss_pred EEEEeCCCCceeeecCCCCCCCCCCceeEEEEEcCCCCCeEEEEcCCCcEEEEecCCeE-EEEeeCCcccCCcEEEEEEC
Q 010362 372 VKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQV-VKSFSSGKREGGDFVAACVS 450 (512)
Q Consensus 372 i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~s 450 (512)
|.+||+....+...+. ..|..+...++|+|.++.++++.+.|..|.+||...+. ..++.. ..+...++|+
T Consensus 189 VtlwDv~g~sp~~~~~-----~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y----~~Plstvaf~ 259 (673)
T KOG4378|consen 189 VTLWDVQGMSPIFHAS-----EAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTY----SHPLSTVAFS 259 (673)
T ss_pred EEEEeccCCCcccchh-----hhccCCcCcceecCCccceEEEecccceEEEeecccccccceeee----cCCcceeeec
Confidence 9999998776555543 45788999999999999999999999999999998443 233322 3468899999
Q ss_pred CCCCEEEEEeCCCeEEEEEcCC-CeeEEeccccCCCeEEEEEcCCC
Q 010362 451 PKGEWIYCVGEDRNLYCFSHQS-GKLEHLMKVHEKDVIGVTHHPHR 495 (512)
Q Consensus 451 ~~g~~l~~g~~dg~i~iwd~~~-~~~~~~~~~h~~~v~~v~~~p~~ 495 (512)
++|.+|++|+..|.|+.||++. ..++.++.+|...|++++|-|..
T Consensus 260 ~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 260 ECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQPSP 305 (673)
T ss_pred CCceEEEeecCCceEEEEecccCCCCceEeeecccceeEEEeeecc
Confidence 9999999999999999999986 45888999999999999998764
No 150
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.91 E-value=3.9e-22 Score=185.21 Aligned_cols=292 Identities=16% Similarity=0.263 Sum_probs=224.0
Q ss_pred ecCcCceEEEEECCCCCEEEEEeCCCeEEEEEcCCCeee--ccccccccceeeccCcceeEEEEcCCCCeEEEEeCCCeE
Q 010362 210 FGTKSHAECARFSPDGQFLVSCSFDGFIEVWDYLSGKLK--KDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQDGKI 287 (512)
Q Consensus 210 ~~h~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~--~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i 287 (512)
.||.+.|.++.|+|.+..|.++|.|.++.+|.-.+..-+ ..... ....|.........|+|+++.+++-+..|..
T Consensus 264 ~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRl---Ge~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~ 340 (764)
T KOG1063|consen 264 MGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRL---GEVGGSAGGFWGGLWSPNSNVIIAHGRTGGF 340 (764)
T ss_pred cCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEe---ecccccccceeeEEEcCCCCEEEEecccCcE
Confidence 499999999999999999999999999999986554222 21111 1122445678899999999999999999999
Q ss_pred EEEEccCCe--eeEEeccccccCeEEEEEecCCCEEEEEeCCCcEEEEeCC-----------------------------
Q 010362 288 KVWRIRSGQ--CLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLK----------------------------- 336 (512)
Q Consensus 288 ~vwd~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~i~d~~----------------------------- 336 (512)
++|...+.. .......+|...|.+++|+|.|.++++.+.|.+-+++-.-
T Consensus 341 hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~ 420 (764)
T KOG1063|consen 341 HLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDL 420 (764)
T ss_pred EEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccCCc
Confidence 999833221 1222334899999999999999999999988776664211
Q ss_pred ------------------------------------------------------------CCc-----------------
Q 010362 337 ------------------------------------------------------------SGK----------------- 339 (512)
Q Consensus 337 ------------------------------------------------------------~~~----------------- 339 (512)
+|.
T Consensus 421 ~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L 500 (764)
T KOG1063|consen 421 QFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCEL 500 (764)
T ss_pred eeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhc
Confidence 000
Q ss_pred ----------------eeEEeeCCccceeEEEEcCCCCEEEEEeCC-----CcEEEEeCCCCceeeecCCCCCCCCCCce
Q 010362 340 ----------------LLKEFRGHSSYVNDAIFTNDGSRVVTASSD-----CTVKVWDLKSTDCLQTFKPPPPLRGGDAS 398 (512)
Q Consensus 340 ----------------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 398 (512)
.+..+-+|...|.+++.+|+++.+++++.. ..|++|+..+-...+.+ .+|+-.
T Consensus 501 ~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L------~~HsLT 574 (764)
T KOG1063|consen 501 TEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQEL------EGHSLT 574 (764)
T ss_pred cCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhhee------cccceE
Confidence 001123677889999999999999998764 35899998876655544 478899
Q ss_pred eEEEEEcCCCCCeEEEEcCCCcEEEEecCCeEE--EEeeCCcccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCC--e
Q 010362 399 VNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQVV--KSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSG--K 474 (512)
Q Consensus 399 i~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~dg~i~iwd~~~~--~ 474 (512)
|+.++|+|++ .++++.+.|..+.+|....... ..+.....|..-|..+.|+|++.++++++.|.+|.+|..... +
T Consensus 575 VT~l~FSpdg-~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~ 653 (764)
T KOG1063|consen 575 VTRLAFSPDG-RYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDK 653 (764)
T ss_pred EEEEEECCCC-cEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCchhh
Confidence 9999999998 9999999999999999863322 223335556677889999999999999999999999998877 4
Q ss_pred eEEe--ccccCCCeEEEEEcC-CC----CeEEEEECCCeEEEec
Q 010362 475 LEHL--MKVHEKDVIGVTHHP-HR----NLLATYGEDCTMKLWK 511 (512)
Q Consensus 475 ~~~~--~~~h~~~v~~v~~~p-~~----~~l~s~~~dg~i~iW~ 511 (512)
.+.. ...+..+|++++|.| +. ..++.|-..|.|.+|+
T Consensus 654 ~i~~~a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~ 697 (764)
T KOG1063|consen 654 YISRFACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWR 697 (764)
T ss_pred hhhhhchhccCCceeeEEeeccccccccceEEEEecccEEEEEe
Confidence 3332 335788999999998 32 3778888999999996
No 151
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.90 E-value=4.9e-22 Score=173.49 Aligned_cols=297 Identities=17% Similarity=0.295 Sum_probs=208.4
Q ss_pred EecCcCceEEEEECCCCC-EEEEEeCCCeEEEEEcCCCeeecc-ccccccceeeccCcceeEEEEcCCCCeEEEEeCCCe
Q 010362 209 KFGTKSHAECARFSPDGQ-FLVSCSFDGFIEVWDYLSGKLKKD-LQYQADETFMMHDETVLCIEFSRDSEMLASGSQDGK 286 (512)
Q Consensus 209 ~~~h~~~v~~~~~s~~~~-~l~sg~~dg~i~iwd~~~~~~~~~-~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~ 286 (512)
..+...+|..+.|.+++. .+|||+.|..|+||-++.+..... ........+..|...|+++.|+|+|..||+|+.+|.
T Consensus 9 ~wH~~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~ 88 (434)
T KOG1009|consen 9 SWHDHEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGE 88 (434)
T ss_pred EecCCCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCce
Confidence 335667899999999776 999999999999999876544331 222334467789999999999999999999999999
Q ss_pred EEEEEcc--------C-----C--eeeEEeccccccCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeeCCccce
Q 010362 287 IKVWRIR--------S-----G--QCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYV 351 (512)
Q Consensus 287 i~vwd~~--------~-----~--~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v 351 (512)
|.+|... + . -.+.....+|...|..++|+|++..+++++.|+.+++||+..|.....+..|...+
T Consensus 89 v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yv 168 (434)
T KOG1009|consen 89 VFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYV 168 (434)
T ss_pred EEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeecccccccc
Confidence 9999765 2 1 12233334788999999999999999999999999999999999999999999999
Q ss_pred eEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeecCC----CCCCCCCC-------------ceeEEEEEcCCCCCeEEE
Q 010362 352 NDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKP----PPPLRGGD-------------ASVNSVHLFPKNPDHIVV 414 (512)
Q Consensus 352 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~----~~~~~~~~-------------~~i~~~~~~~~~~~~l~~ 414 (512)
..++|.|-++++++-+.|...+.+.+.....+..... ........ .-...++|.|++ .++++
T Consensus 169 qgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG-~llvt 247 (434)
T KOG1009|consen 169 QGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDG-SLLVT 247 (434)
T ss_pred ceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCC-cEEEc
Confidence 9999999999999999988777777665433332220 00000111 122345667776 44444
Q ss_pred EcC----CC-----cEEEEecC--CeEEEEeeCCcccCCcEEEEEECC-----------------CCCEEEEEeCCCeEE
Q 010362 415 CNK----TS-----SIYIMTLQ--GQVVKSFSSGKREGGDFVAACVSP-----------------KGEWIYCVGEDRNLY 466 (512)
Q Consensus 415 ~~~----~~-----~i~~~~~~--~~~~~~~~~~~~~~~~~~~~~~s~-----------------~g~~l~~g~~dg~i~ 466 (512)
... .+ ..++++-. .++...+... ..+...+.++| --+.+++......|+
T Consensus 248 Pag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~---~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~~svy 324 (434)
T KOG1009|consen 248 PAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSP---KKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIATKNSVY 324 (434)
T ss_pred ccceeeeCCceeeceeEeeccccccCceeecCCC---CcceEEEEeeeeEEEeccccccccccccccceEEEEeecceEE
Confidence 321 11 22333322 1111111111 11222222222 123344445567899
Q ss_pred EEEcCCCeeEEecc-ccCCCeEEEEEcCCCCeEEEEECCCeEEE
Q 010362 467 CFSHQSGKLEHLMK-VHEKDVIGVTHHPHRNLLATYGEDCTMKL 509 (512)
Q Consensus 467 iwd~~~~~~~~~~~-~h~~~v~~v~~~p~~~~l~s~~~dg~i~i 509 (512)
+||.++-.++.... -|-..++.++|++||..++..|.||...+
T Consensus 325 vydtq~~~P~~~v~nihy~~iTDiaws~dg~~l~vSS~DGyCS~ 368 (434)
T KOG1009|consen 325 VYDTQTLEPLAVVDNIHYSAITDIAWSDDGSVLLVSSTDGFCSL 368 (434)
T ss_pred EeccccccceEEEeeeeeeeecceeecCCCcEEEEeccCCceEE
Confidence 99999988876654 48889999999999999999999997643
No 152
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=1.3e-22 Score=173.16 Aligned_cols=274 Identities=18% Similarity=0.238 Sum_probs=197.1
Q ss_pred CEEEEEeCCCeEEEEEcCCCeeeccccccccceeeccCcceeEEEEcC--CCCeEEEEeCCCeEEEEEccCCeeeEEecc
Q 010362 226 QFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSR--DSEMLASGSQDGKIKVWRIRSGQCLRRLER 303 (512)
Q Consensus 226 ~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~--~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~ 303 (512)
..+|++...|.|++||..+++....+ +++...++.++|.. ..+.+.+|+.||+|++||+++......+..
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~f--------k~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~ 112 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEF--------KGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISW 112 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhhee--------cCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheec
Confidence 56888889999999999998776654 45888888999987 467899999999999999998766555442
Q ss_pred c-cc-cCeEEEEEecCCCEEEEEeC----CCcEEEEeCCCCce-eEEe-eCCccceeEEEEcC-CCCEEEEEeCCCcEEE
Q 010362 304 A-HS-EGVTSLVFSRDGSQILSTSF----DSTARIHGLKSGKL-LKEF-RGHSSYVNDAIFTN-DGSRVVTASSDCTVKV 374 (512)
Q Consensus 304 ~-~~-~~i~~~~~~~~~~~l~~~~~----dg~v~i~d~~~~~~-~~~~-~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i 374 (512)
. +. .+..+++.+-+++.+++|+. +-.|.+||++..+. +..+ ..|...|+++.|+| +.+.|++|+.||.|.+
T Consensus 113 ~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnl 192 (376)
T KOG1188|consen 113 TQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNL 192 (376)
T ss_pred cCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEe
Confidence 2 22 46777777767888888754 56899999998766 5544 46999999999999 5678999999999999
Q ss_pred EeCCCCceeeecCCCCCCCCCCceeEEEEEcCCCCCeEEEEcCCCcEEEEecCCeE-EEEeeCCcc---------cCCcE
Q 010362 375 WDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQV-VKSFSSGKR---------EGGDF 444 (512)
Q Consensus 375 wd~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~-~~~~~~~~~---------~~~~~ 444 (512)
||+........+. ....+..+|..+.|...+.+.+.+-+......+|++.... ...+..... ....+
T Consensus 193 fD~~~d~EeDaL~---~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~ 269 (376)
T KOG1188|consen 193 FDTKKDNEEDALL---HVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYV 269 (376)
T ss_pred eecCCCcchhhHH---HhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhhe
Confidence 9998653211111 1224567899999999887889999999999999998332 222211100 00111
Q ss_pred EEEEECC-CCCEEEEEe-CCCeEEEEEcC---C---CeeEEeccc-cCCCeEEEEEcCCCCeEEEEECCCeEEEec
Q 010362 445 VAACVSP-KGEWIYCVG-EDRNLYCFSHQ---S---GKLEHLMKV-HEKDVIGVTHHPHRNLLATYGEDCTMKLWK 511 (512)
Q Consensus 445 ~~~~~s~-~g~~l~~g~-~dg~i~iwd~~---~---~~~~~~~~~-h~~~v~~v~~~p~~~~l~s~~~dg~i~iW~ 511 (512)
.. +.+| ++...+.++ .-|...++-+. + ++.+..+.+ |...|+++.|...+.++.|||.||.+.+|+
T Consensus 270 I~-~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk 344 (376)
T KOG1188|consen 270 IN-EHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWK 344 (376)
T ss_pred ee-cccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEe
Confidence 11 2223 344444444 35555555443 2 334455665 667888999998999999999999999997
No 153
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=6.4e-23 Score=182.93 Aligned_cols=294 Identities=21% Similarity=0.343 Sum_probs=229.9
Q ss_pred cCcCceEEEEECCCCCEEEEEeCCCeEEEEEcCCCeeeccccccccceeeccCcceeEEEEcC--CCCeEEEEeCCCeEE
Q 010362 211 GTKSHAECARFSPDGQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSR--DSEMLASGSQDGKIK 288 (512)
Q Consensus 211 ~h~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~--~~~~l~s~~~dg~i~ 288 (512)
+|.+.|..|.|+..|..|++||.|..|.+||+..+.....+. .+|...|....|-| +...+++++.||.++
T Consensus 140 ~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~-------SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr 212 (559)
T KOG1334|consen 140 KHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFE-------SGHCNNVFQAKFIPFSGDRTIVTSSRDGQVR 212 (559)
T ss_pred CCCCccceeeecccCceeeccCccceEEeehhhccCcccccc-------cccccchhhhhccCCCCCcCceeccccCcee
Confidence 899999999999999999999999999999999887665443 35889999888988 456799999999999
Q ss_pred EEEccC-Ceee-EEeccccccCeEEEEEecCC-CEEEEEeCCCcEEEEeCCCCceeEEee---CCcc---ceeEEEEcCC
Q 010362 289 VWRIRS-GQCL-RRLERAHSEGVTSLVFSRDG-SQILSTSFDSTARIHGLKSGKLLKEFR---GHSS---YVNDAIFTND 359 (512)
Q Consensus 289 vwd~~~-~~~~-~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~v~i~d~~~~~~~~~~~---~~~~---~v~~~~~~~~ 359 (512)
+=.+.. +.+. .+....|.++|..++.-|+. ..|.+++.|+.+.-+|++.+.+...+. .+.. ...+++.+|.
T Consensus 213 ~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~ 292 (559)
T KOG1334|consen 213 VSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPR 292 (559)
T ss_pred eeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCC
Confidence 887653 3322 22224789999999999964 568899999999999998876544332 2333 4678888885
Q ss_pred CC-EEEEEeCCCcEEEEeCCCCce------eeecCCCCCCCCCCceeEEEEEcCCCCCeEEEEcCCCcEEEEecC---C-
Q 010362 360 GS-RVVTASSDCTVKVWDLKSTDC------LQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQ---G- 428 (512)
Q Consensus 360 ~~-~l~~~~~dg~i~iwd~~~~~~------~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~~~~~---~- 428 (512)
.. .+++++.|..+++||.+.-.. +..+.+..........|++++++.++ .-+.++..|-.|+++.-. |
T Consensus 293 nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~-sElLaSYnDe~IYLF~~~~~~G~ 371 (559)
T KOG1334|consen 293 NTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDG-SELLASYNDEDIYLFNKSMGDGS 371 (559)
T ss_pred CccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCc-cceeeeecccceEEeccccccCC
Confidence 54 789999999999999886432 34454444444556789999999777 445556677778888554 3
Q ss_pred ---------eEEEEeeCCcccCCcEEEEEE-CCCCCEEEEEeCCCeEEEEEcCCCeeEEeccccCCCeEEEEEcCCCCeE
Q 010362 429 ---------QVVKSFSSGKREGGDFVAACV-SPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPHRNLL 498 (512)
Q Consensus 429 ---------~~~~~~~~~~~~~~~~~~~~~-s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l 498 (512)
..++....++.....|..+-| .|...|+++|+.-|.|.||+-++++++..+.+-...|+|+.-||.-.+|
T Consensus 372 ~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~PvL 451 (559)
T KOG1334|consen 372 EPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLPVL 451 (559)
T ss_pred CCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCCCCchh
Confidence 223343344444455666654 8999999999999999999999999999999877799999999999999
Q ss_pred EEEECCCeEEEecC
Q 010362 499 ATYGEDCTMKLWKP 512 (512)
Q Consensus 499 ~s~~~dg~i~iW~~ 512 (512)
||+|-|.-|+||-|
T Consensus 452 AsSGid~DVKIWTP 465 (559)
T KOG1334|consen 452 ASSGIDHDVKIWTP 465 (559)
T ss_pred hccCCccceeeecC
Confidence 99999999999976
No 154
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=3.4e-23 Score=203.15 Aligned_cols=284 Identities=15% Similarity=0.254 Sum_probs=214.0
Q ss_pred EEEEECCCCC-EEEEEe----------CCCeEEEEEcCCCeeeccccccccceeeccCcceeEEEEcCCCCe----EEEE
Q 010362 217 ECARFSPDGQ-FLVSCS----------FDGFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEM----LASG 281 (512)
Q Consensus 217 ~~~~~s~~~~-~l~sg~----------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~----l~s~ 281 (512)
..++|+|.+. ++|+|. .+.++.||.+.-......+. +...+ .-....+.++|.+.+.. ||.|
T Consensus 10 a~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk--~~~s~-~s~~rF~kL~W~~~g~~~~GlIaGG 86 (1049)
T KOG0307|consen 10 ATFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLK--PVGSL-QSSNRFNKLAWGSYGSHSHGLIAGG 86 (1049)
T ss_pred ceEEecCCCchhhHHHhhhhccccccccccccceeeecccCcccccc--ccccc-cccccceeeeecccCCCccceeecc
Confidence 3478999886 566543 34566666554322111111 00011 13467789999997765 8899
Q ss_pred eCCCeEEEEEccC---C---eeeEEeccccccCeEEEEEecCC-CEEEEEeCCCcEEEEeCCCCceeEEee--CCcccee
Q 010362 282 SQDGKIKVWRIRS---G---QCLRRLERAHSEGVTSLVFSRDG-SQILSTSFDSTARIHGLKSGKLLKEFR--GHSSYVN 352 (512)
Q Consensus 282 ~~dg~i~vwd~~~---~---~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~v~i~d~~~~~~~~~~~--~~~~~v~ 352 (512)
..||.|.+||... + ..+.+.. .|.+.|..+.|++.. +.+++|+.||.|.|||+...+.-.... ...+.|.
T Consensus 87 ~edG~I~ly~p~~~~~~~~~~~la~~~-~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~ 165 (1049)
T KOG0307|consen 87 LEDGNIVLYDPASIIANASEEVLATKS-KHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIK 165 (1049)
T ss_pred ccCCceEEecchhhccCcchHHHhhhc-ccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccce
Confidence 9999999999865 2 2234444 799999999999965 599999999999999998755444332 2456799
Q ss_pred EEEEcCC-CCEEEEEeCCCcEEEEeCCCCceeeecCCCCCCCCCCceeEEEEEcCCCCCeEEEEcCCC---cEEEEecC-
Q 010362 353 DAIFTND-GSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTS---SIYIMTLQ- 427 (512)
Q Consensus 353 ~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~---~i~~~~~~- 427 (512)
+++|+.. ...|++++.+|.+.|||++..+.+-.+.... ....+..+.|+|++...+++++.|. .|.+||++
T Consensus 166 ~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~----~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~ 241 (1049)
T KOG0307|consen 166 CLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTP----GRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRF 241 (1049)
T ss_pred EeccchhhhHHhhccCCCCCceeccccCCCcccccccCC----CccceeeeeeCCCCceeeeeecCCCCCceeEeecccc
Confidence 9999874 4567889999999999999887666555332 2256889999999988888888765 49999998
Q ss_pred -CeEEEEeeCCcccCCcEEEEEECCCC-CEEEEEeCCCeEEEEEcCCCeeEEeccccCCCeEEEEEcCCC-CeEEEEECC
Q 010362 428 -GQVVKSFSSGKREGGDFVAACVSPKG-EWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPHR-NLLATYGED 504 (512)
Q Consensus 428 -~~~~~~~~~~~~~~~~~~~~~~s~~g-~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~p~~-~~l~s~~~d 504 (512)
...++.+.. |...+.++.|++.+ .++++++.|+.|.+|+.++++.+..+....+.+..+.|+|.. ..++.++-|
T Consensus 242 assP~k~~~~---H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfd 318 (1049)
T KOG0307|consen 242 ASSPLKILEG---HQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMAAASFD 318 (1049)
T ss_pred cCCchhhhcc---cccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcceeeeeecCCCcchhhhheec
Confidence 445555533 45669999998866 899999999999999999999999999888899999999955 489999999
Q ss_pred CeEEEec
Q 010362 505 CTMKLWK 511 (512)
Q Consensus 505 g~i~iW~ 511 (512)
|.|-|+.
T Consensus 319 gkI~I~s 325 (1049)
T KOG0307|consen 319 GKISIYS 325 (1049)
T ss_pred cceeeee
Confidence 9999874
No 155
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.90 E-value=2.5e-22 Score=173.53 Aligned_cols=206 Identities=19% Similarity=0.296 Sum_probs=166.5
Q ss_pred ccccCeEEEEEecCC--CEEEEEeCCCcEEEEeCCC----------------CceeEEeeCCccceeEEEEcCC-CCEEE
Q 010362 304 AHSEGVTSLVFSRDG--SQILSTSFDSTARIHGLKS----------------GKLLKEFRGHSSYVNDAIFTND-GSRVV 364 (512)
Q Consensus 304 ~~~~~i~~~~~~~~~--~~l~~~~~dg~v~i~d~~~----------------~~~~~~~~~~~~~v~~~~~~~~-~~~l~ 364 (512)
+|.+.++.+.-.+-+ .+.++-+..|.|+|||+.. .+++.++.+|...-..++|+|- ...++
T Consensus 149 ~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~Ll 228 (440)
T KOG0302|consen 149 PHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLL 228 (440)
T ss_pred ccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccc
Confidence 566777777766644 4455556789999999842 3567788899999999999993 23488
Q ss_pred EEeCCCcEEEEeCCCCceeeecCCCCCCCCCCceeEEEEEcCCCCCeEEEEcCCCcEEEEecCCeEEEEeeCCcccCCcE
Q 010362 365 TASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQVVKSFSSGKREGGDF 444 (512)
Q Consensus 365 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 444 (512)
+|..-+.|++|...++.-.. ...++.+|..+|..+.|+|....++++|+.|+.|+|||++..+.+.......+++.|
T Consensus 229 sGDc~~~I~lw~~~~g~W~v---d~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDV 305 (440)
T KOG0302|consen 229 SGDCVKGIHLWEPSTGSWKV---DQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDV 305 (440)
T ss_pred cCccccceEeeeeccCceee---cCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCce
Confidence 88888899999988864322 223345699999999999999999999999999999999955332222225567889
Q ss_pred EEEEECCCCCEEEEEeCCCeEEEEEcCC---CeeEEeccccCCCeEEEEEcC-CCCeEEEEECCCeEEEecC
Q 010362 445 VAACVSPKGEWIYCVGEDRNLYCFSHQS---GKLEHLMKVHEKDVIGVTHHP-HRNLLATYGEDCTMKLWKP 512 (512)
Q Consensus 445 ~~~~~s~~g~~l~~g~~dg~i~iwd~~~---~~~~~~~~~h~~~v~~v~~~p-~~~~l~s~~~dg~i~iW~~ 512 (512)
+.+.|+.+..+|++|+.||.+.|||++. ++++..++.|..+|++|.|+| +...|+++|.|..|.+||.
T Consensus 306 NVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDl 377 (440)
T KOG0302|consen 306 NVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDL 377 (440)
T ss_pred eeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEe
Confidence 9999999988999999999999999874 678899999999999999999 4568889999999999984
No 156
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.90 E-value=9.9e-22 Score=166.56 Aligned_cols=244 Identities=15% Similarity=0.234 Sum_probs=186.9
Q ss_pred eeEEEEcCCCCeEEEEeCCCeEEEEEccCCe------------eeEEeccccccCeEEEEEe-------cCCCEEEEEeC
Q 010362 266 VLCIEFSRDSEMLASGSQDGKIKVWRIRSGQ------------CLRRLERAHSEGVTSLVFS-------RDGSQILSTSF 326 (512)
Q Consensus 266 v~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~------------~~~~~~~~~~~~i~~~~~~-------~~~~~l~~~~~ 326 (512)
...+.|+|||..|++-+.|..+.+|++...- ....+.......|...+|- |+..++++.+.
T Consensus 52 ~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr 131 (406)
T KOG2919|consen 52 LKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSR 131 (406)
T ss_pred hccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccc
Confidence 4467899999999999999999999985311 1112222345668888886 57789999999
Q ss_pred CCcEEEEeCCCCceeEEeeC--Ccc---ceeEEEEcCCCCEEEEEeCCCcEEEEeC-CCCceeeecCCCC-CCCCCCcee
Q 010362 327 DSTARIHGLKSGKLLKEFRG--HSS---YVNDAIFTNDGSRVVTASSDCTVKVWDL-KSTDCLQTFKPPP-PLRGGDASV 399 (512)
Q Consensus 327 dg~v~i~d~~~~~~~~~~~~--~~~---~v~~~~~~~~~~~l~~~~~dg~i~iwd~-~~~~~~~~~~~~~-~~~~~~~~i 399 (512)
+.-|++||.-+|+...++.+ |.. ...+++|+|||..|++|. ...|++||+ |.|+......... ...+..+.+
T Consensus 132 ~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGy-krcirvFdt~RpGr~c~vy~t~~~~k~gq~gii 210 (406)
T KOG2919|consen 132 DQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGY-KRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGII 210 (406)
T ss_pred cCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecc-cceEEEeeccCCCCCCcchhhhhccccccccee
Confidence 99999999999998887765 322 346899999999998776 568999999 5554333222221 123556789
Q ss_pred EEEEEcCCCCCeEEEEcCCCcEEEEecCCeEEEEeeCCcccCCcEEEEEECCCCCEEEEEe-CCCeEEEEEcCC-CeeEE
Q 010362 400 NSVHLFPKNPDHIVVCNKTSSIYIMTLQGQVVKSFSSGKREGGDFVAACVSPKGEWIYCVG-EDRNLYCFSHQS-GKLEH 477 (512)
Q Consensus 400 ~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~-~dg~i~iwd~~~-~~~~~ 477 (512)
.+++++|.....+++++...++-++.-.+........ .+.+.|+.++|.++|+.+++|+ .|-.|.+||++. +.++.
T Consensus 211 sc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llg--gh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~ 288 (406)
T KOG2919|consen 211 SCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLG--GHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVY 288 (406)
T ss_pred eeeeccCCCCcceeeecccceeeeEecCCCCceeeec--ccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhh
Confidence 9999999999999999999999999887543333333 3467899999999999999999 577899999985 45677
Q ss_pred eccccCC-CeEEEE--EcCCCCeEEEEECCCeEEEecC
Q 010362 478 LMKVHEK-DVIGVT--HHPHRNLLATYGEDCTMKLWKP 512 (512)
Q Consensus 478 ~~~~h~~-~v~~v~--~~p~~~~l~s~~~dg~i~iW~~ 512 (512)
.+..|.+ .=..|. ..|++++|++|+.||.|++||.
T Consensus 289 ~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdl 326 (406)
T KOG2919|consen 289 ALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDL 326 (406)
T ss_pred hhhhhccCccceEEEecCCCCceeeccCCCccEEEEec
Confidence 7777765 333444 4578999999999999999984
No 157
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.89 E-value=4.2e-22 Score=177.98 Aligned_cols=264 Identities=13% Similarity=0.183 Sum_probs=202.5
Q ss_pred CCeEEEEEcCCCeeeccccccccceeeccCcceeEEEEcCCCCe-EEEEeCCCeEEEEEccCCe--eeEEeccccccCeE
Q 010362 234 DGFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEM-LASGSQDGKIKVWRIRSGQ--CLRRLERAHSEGVT 310 (512)
Q Consensus 234 dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~-l~s~~~dg~i~vwd~~~~~--~~~~~~~~~~~~i~ 310 (512)
...+++||+...+....+..+. ....+.++.|+....+ +++.+.|..+++|.-. |+ .+..........-.
T Consensus 11 gd~~kl~D~s~~~~~~~~~~~t------~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~-g~~~~Vp~~~k~~gd~~~ 83 (673)
T KOG4378|consen 11 GDKTKLSDFSDLETKSEYVHQT------AEPGDFSFNWQRRNFLVVASMAGDKVMRIKEKD-GKTPEVPRVRKLTGDNAF 83 (673)
T ss_pred CCceEEeecccccCccccccCC------CCCcceeeeccccceEEEeecCCceeEEEeccc-CCCCccceeeccccchHH
Confidence 4579999998766554433211 2234899999987642 3334567889999743 33 11112112233445
Q ss_pred EEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeeCCccceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeecCCCC
Q 010362 311 SLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPP 390 (512)
Q Consensus 311 ~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 390 (512)
|++......++++|+..+.|+|||++...+.+.+++|.+.|+++.++....+|++++..|-|.|..+.++....++..+
T Consensus 84 Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~- 162 (673)
T KOG4378|consen 84 CVACASQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTID- 162 (673)
T ss_pred HHhhhhcceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecC-
Confidence 5555556689999999999999999987888889999999999999999999999999999999999998776666533
Q ss_pred CCCCCCceeEEEEEcCCCCCeEEEEcCCCcEEEEecCCeEEEEeeCCcccCCcEEEEEECCCC-CEEEEEeCCCeEEEEE
Q 010362 391 PLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQVVKSFSSGKREGGDFVAACVSPKG-EWIYCVGEDRNLYCFS 469 (512)
Q Consensus 391 ~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g-~~l~~g~~dg~i~iwd 469 (512)
....+.-+.++|....++.+++.+|.+.+||..+..... .....|..+...+||+|.. .++++.+.|..|++||
T Consensus 163 ----sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~-~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD 237 (673)
T KOG4378|consen 163 ----SGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIF-HASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYD 237 (673)
T ss_pred ----CCCeEEEeecccccceeeEeeccCCeEEEEeccCCCccc-chhhhccCCcCcceecCCccceEEEecccceEEEee
Confidence 235667889999998999999999999999999754322 2222356778899999964 5678889999999999
Q ss_pred cCCCeeEEeccccCCCeEEEEEcCCCCeEEEEECCCeEEEec
Q 010362 470 HQSGKLEHLMKVHEKDVIGVTHHPHRNLLATYGEDCTMKLWK 511 (512)
Q Consensus 470 ~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~~~dg~i~iW~ 511 (512)
+........+. ...+...|+|+++|.+|+.|+..|.|..||
T Consensus 238 ~~s~~s~~~l~-y~~Plstvaf~~~G~~L~aG~s~G~~i~YD 278 (673)
T KOG4378|consen 238 IRSQASTDRLT-YSHPLSTVAFSECGTYLCAGNSKGELIAYD 278 (673)
T ss_pred cccccccceee-ecCCcceeeecCCceEEEeecCCceEEEEe
Confidence 99877766665 467889999999999999999999999997
No 158
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.89 E-value=4.3e-22 Score=164.09 Aligned_cols=297 Identities=17% Similarity=0.213 Sum_probs=208.2
Q ss_pred ccccceEEEecCcCceEEEEECCCCCEEEEEeCCCeEEEEEcCCCeeeccccccccceeeccCcceeEEEEcCCCCeEEE
Q 010362 201 PTTLSHTIKFGTKSHAECARFSPDGQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLAS 280 (512)
Q Consensus 201 ~~~~~~~~~~~h~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s 280 (512)
|+.+...++ +|.+.|+|+.|-.+++ |.+|..-|.|++|++.+......+.. .|...|+.+.--|+ ..+.+
T Consensus 3 pPdP~fvLR-p~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~~~r~-------~g~~~it~lq~~p~-d~l~t 72 (323)
T KOG0322|consen 3 PPDPFFVLR-PHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLPLIRL-------FGRLFITNLQSIPN-DSLDT 72 (323)
T ss_pred CCCCeeEec-cccchheehhhccchh-hhcccccceEEEEEeecCccchhhhh-------hccceeeceeecCC-cchhh
Confidence 455566677 8999999999998886 88899999999999988776554441 27788999999887 46788
Q ss_pred EeCCCeEEEEEccCCeeeEEeccccccCeEEEEEec-----CCC----EEEEEeCCC-cEEEEeCCCCceeEEe----eC
Q 010362 281 GSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSR-----DGS----QILSTSFDS-TARIHGLKSGKLLKEF----RG 346 (512)
Q Consensus 281 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~-----~~~----~l~~~~~dg-~v~i~d~~~~~~~~~~----~~ 346 (512)
-+.|+.+.+|++.-+..+. .|.-.++++.|.+ +++ .++.-+... .+.+-|......+... .+
T Consensus 73 qgRd~~L~lw~ia~s~~i~----i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~ 148 (323)
T KOG0322|consen 73 QGRDPLLILWTIAYSAFIS----IHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERS 148 (323)
T ss_pred cCCCceEEEEEccCcceEE----EeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhcc
Confidence 8899999999998755432 2333344444432 221 111111110 1222222111111111 12
Q ss_pred CccceeEEEEcC-CCC--EEEEEeCCCcEEEEeCCCCceeeecCC----CCCCCCCCceeEEEEEcCCCCCeEEEEcCCC
Q 010362 347 HSSYVNDAIFTN-DGS--RVVTASSDCTVKVWDLKSTDCLQTFKP----PPPLRGGDASVNSVHLFPKNPDHIVVCNKTS 419 (512)
Q Consensus 347 ~~~~v~~~~~~~-~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~----~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~ 419 (512)
..+.+.+..+.. ++. ++++|.++|.+.+||+.++..+-.++. ......|..++.++.+.+.. +.=++++.+.
T Consensus 149 Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~-~rGisgga~d 227 (323)
T KOG0322|consen 149 KLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSC-DRGISGGADD 227 (323)
T ss_pred ccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhh-cCCcCCCccc
Confidence 345566666533 333 467788899999999999855444433 23445788899999998755 5556777788
Q ss_pred cEEEEecCCe--EEEEeeCCcccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCeeEEeccccCCCeEEEEEcCCCCe
Q 010362 420 SIYIMTLQGQ--VVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPHRNL 497 (512)
Q Consensus 420 ~i~~~~~~~~--~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~p~~~~ 497 (512)
.+..|+++.. .+..-......+..+..+.+-||++.+++++.|+.|++|+.++..++..++-|...|++++|+|+..+
T Consensus 228 kl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~l 307 (323)
T KOG0322|consen 228 KLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCEL 307 (323)
T ss_pred cceeeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCch
Confidence 8888888722 11111111112344778899999999999999999999999999999999999999999999999999
Q ss_pred EEEEECCCeEEEecC
Q 010362 498 LATYGEDCTMKLWKP 512 (512)
Q Consensus 498 l~s~~~dg~i~iW~~ 512 (512)
+|++|.|++|.+|+.
T Consensus 308 mAaaskD~rISLWkL 322 (323)
T KOG0322|consen 308 MAAASKDARISLWKL 322 (323)
T ss_pred hhhccCCceEEeeec
Confidence 999999999999984
No 159
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.89 E-value=9.9e-22 Score=179.57 Aligned_cols=252 Identities=22% Similarity=0.341 Sum_probs=193.6
Q ss_pred CeeeccccccccceeeccCcceeEEEEcCCCCeEEEEeCCCeEEEEEccCCeeeEEeccccccCeEEEEEecCCC--EEE
Q 010362 245 GKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGS--QIL 322 (512)
Q Consensus 245 ~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~l~ 322 (512)
.+-++.+...+.-.+.||++.|.||...|.|.+|++|+.||+|+||.+.+|.+++++. ..+.|.|++|+|.+. .||
T Consensus 382 p~dLrPFPt~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~--~d~~I~~vaw~P~~~~~vLA 459 (733)
T KOG0650|consen 382 PKDLRPFPTRCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQ--FDSEIRSVAWNPLSDLCVLA 459 (733)
T ss_pred hhhcCCCcceeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEe--ecceeEEEEecCCCCceeEE
Confidence 3444455555566889999999999999999999999999999999999999999986 677999999999654 344
Q ss_pred EEeCCCcEEEEeCCCC-------------------------------------ceeEEeeCCccceeEEEEcCCCCEEEE
Q 010362 323 STSFDSTARIHGLKSG-------------------------------------KLLKEFRGHSSYVNDAIFTNDGSRVVT 365 (512)
Q Consensus 323 ~~~~dg~v~i~d~~~~-------------------------------------~~~~~~~~~~~~v~~~~~~~~~~~l~~ 365 (512)
++- +..+.+.+..-| .-+...-.|...|+.+.|+..|.+|++
T Consensus 460 vA~-~~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlat 538 (733)
T KOG0650|consen 460 VAV-GECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLAT 538 (733)
T ss_pred EEe-cCceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEE
Confidence 433 333444433211 001222347788999999999999998
Q ss_pred EeCC---CcEEEEeCCCCceeeecCCCCCCCCCCceeEEEEEcCCCCCeEEEEcCCCcEEEEecCCe-EEEEeeCCcccC
Q 010362 366 ASSD---CTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQ-VVKSFSSGKREG 441 (512)
Q Consensus 366 ~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~ 441 (512)
...+ ..|.|+++........| ....+.+.++.|+|..+.++++. ...|++||+..+ .++.+..+ .
T Consensus 539 V~~~~~~~~VliHQLSK~~sQ~PF------~kskG~vq~v~FHPs~p~lfVaT--q~~vRiYdL~kqelvKkL~tg---~ 607 (733)
T KOG0650|consen 539 VMPDSGNKSVLIHQLSKRKSQSPF------RKSKGLVQRVKFHPSKPYLFVAT--QRSVRIYDLSKQELVKKLLTG---S 607 (733)
T ss_pred eccCCCcceEEEEecccccccCch------hhcCCceeEEEecCCCceEEEEe--ccceEEEehhHHHHHHHHhcC---C
Confidence 7653 46888988766544333 23467899999999985554443 457899998743 33333332 3
Q ss_pred CcEEEEEECCCCCEEEEEeCCCeEEEEEcCC-CeeEEeccccCCCeEEEEEcCCCCeEEEEECCCeEEEe
Q 010362 442 GDFVAACVSPKGEWIYCVGEDRNLYCFSHQS-GKLEHLMKVHEKDVIGVTHHPHRNLLATYGEDCTMKLW 510 (512)
Q Consensus 442 ~~~~~~~~s~~g~~l~~g~~dg~i~iwd~~~-~~~~~~~~~h~~~v~~v~~~p~~~~l~s~~~dg~i~iW 510 (512)
..+..++++|.|..|+.|+.|+.++.||+.- .++.+.+..|...+++|+||+.-.+++||+.||++.|+
T Consensus 608 kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vf 677 (733)
T KOG0650|consen 608 KWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVF 677 (733)
T ss_pred eeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEE
Confidence 3578899999999999999999999999974 46888899999999999999999999999999999886
No 160
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.89 E-value=1.8e-21 Score=162.96 Aligned_cols=246 Identities=22% Similarity=0.334 Sum_probs=187.3
Q ss_pred ecCcCceEEEEECC-CCCEEEEEeCCCeEEEEEcCCCeeeccccccccceeeccCcceeEEEEcC---CCCeEEEEeCCC
Q 010362 210 FGTKSHAECARFSP-DGQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSR---DSEMLASGSQDG 285 (512)
Q Consensus 210 ~~h~~~v~~~~~s~-~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~---~~~~l~s~~~dg 285 (512)
.+|+-.|..+.|-| |...+.+++.|.+++|||.++.+....+. ..+.|..-+|+| ...++|+|..|-
T Consensus 98 ~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~~F~---------me~~VYshamSp~a~sHcLiA~gtr~~ 168 (397)
T KOG4283|consen 98 NGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQEAVDFK---------MEGKVYSHAMSPMAMSHCLIAAGTRDV 168 (397)
T ss_pred ccceeeeeeeEEeeecCceeecccccceEEEeecccceeeEEee---------cCceeehhhcChhhhcceEEEEecCCC
Confidence 48899999999999 66788899999999999999887666555 456788888888 345788888899
Q ss_pred eEEEEEccCCeeeEEeccccccCeEEEEEecCCCE-EEEEeCCCcEEEEeCCCC-ceeEE--------------eeCCcc
Q 010362 286 KIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQ-ILSTSFDSTARIHGLKSG-KLLKE--------------FRGHSS 349 (512)
Q Consensus 286 ~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-l~~~~~dg~v~i~d~~~~-~~~~~--------------~~~~~~ 349 (512)
.|++-|+.+|.+...+. +|.+.|.++.|+|...+ |++|+.||.|++||++.. .+... -..|.+
T Consensus 169 ~VrLCDi~SGs~sH~Ls-GHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~g 247 (397)
T KOG4283|consen 169 QVRLCDIASGSFSHTLS-GHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYG 247 (397)
T ss_pred cEEEEeccCCcceeeec-cccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccc
Confidence 99999999999999997 99999999999997665 678999999999999754 22222 235778
Q ss_pred ceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeecCCCCCCCCCCceeEEEEEcCCCCCeEEEEcCCCcEEEEecC-C
Q 010362 350 YVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQ-G 428 (512)
Q Consensus 350 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~~~~~-~ 428 (512)
.|+.++|+.++.++++.+.|..+++|+..+|+....-..+. ......-..+.........++.--.++.+.++++- +
T Consensus 248 kvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~--~~n~~~~~~~~~~~~~s~vfv~~p~~~~lall~~~sg 325 (397)
T KOG4283|consen 248 KVNGLAWTSDARYLASCGTDDRIRVWNMESGRNTLREFGPI--IHNQTTSFAVHIQSMDSDVFVLFPNDGSLALLNLLEG 325 (397)
T ss_pred eeeeeeecccchhhhhccCccceEEeecccCcccccccccc--cccccccceEEEeecccceEEEEecCCeEEEEEccCc
Confidence 89999999999999999999999999999886432211111 00000111111222223455555566888888876 5
Q ss_pred eEEEEeeCCcccCCcEEEEEECCCCCEEEEEeCCCeEEEEEc
Q 010362 429 QVVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSH 470 (512)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~dg~i~iwd~ 470 (512)
..+..+..+ ...+.+.++-|+-+...+|..|+.|+.|..
T Consensus 326 s~ir~l~~h---~k~i~c~~~~~~fq~~~tg~~d~ni~~w~p 364 (397)
T KOG4283|consen 326 SFVRRLSTH---LKRINCAAYRPDFEQCFTGDMNGNIYMWSP 364 (397)
T ss_pred eEEEeeecc---cceeeEEeecCchhhhhccccCCccccccc
Confidence 556655554 456888999999999999999999999976
No 161
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.89 E-value=1.1e-21 Score=173.66 Aligned_cols=247 Identities=19% Similarity=0.280 Sum_probs=190.6
Q ss_pred eeccCcceeEEEEcCCC--CeEEEEeCCCeEEEEEccCC----eeeEEeccccccCeEEEEEec-CCCEEEEEeCCCcEE
Q 010362 259 FMMHDETVLCIEFSRDS--EMLASGSQDGKIKVWRIRSG----QCLRRLERAHSEGVTSLVFSR-DGSQILSTSFDSTAR 331 (512)
Q Consensus 259 ~~~h~~~v~~l~~s~~~--~~l~s~~~dg~i~vwd~~~~----~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~v~ 331 (512)
..-+..+|++++|+|.. +++|+|+.-|.|-+||+.+. ..+..+. .|..+|.++.|+| +...+++.+.||+|+
T Consensus 182 ~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~-~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR 260 (498)
T KOG4328|consen 182 AKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFT-PHSGPVSGLKFSPANTSQIYSSSYDGTIR 260 (498)
T ss_pred eEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEec-cCCccccceEecCCChhheeeeccCceee
Confidence 34488999999999954 58999999999999999532 2234444 7999999999999 567899999999999
Q ss_pred EEeCCCCce--eEEeeCCccceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeecCCCCCCCCCCceeEEEEEcCCCC
Q 010362 332 IHGLKSGKL--LKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNP 409 (512)
Q Consensus 332 i~d~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 409 (512)
.-|++.... +.........+.++.|+.+...++.++.=|...+||++++..... ...-|...|.+++++|..+
T Consensus 261 ~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~-----~~~lh~kKI~sv~~NP~~p 335 (498)
T KOG4328|consen 261 LQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYE-----NLRLHKKKITSVALNPVCP 335 (498)
T ss_pred eeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccch-----hhhhhhcccceeecCCCCc
Confidence 999987643 333333455677888888888888888878999999998764221 1234566999999999999
Q ss_pred CeEEEEcCCCcEEEEecCCeEEE--EeeCCcccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcC----CCeeEEeccccC
Q 010362 410 DHIVVCNKTSSIYIMTLQGQVVK--SFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQ----SGKLEHLMKVHE 483 (512)
Q Consensus 410 ~~l~~~~~~~~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~~s~~g~~l~~g~~dg~i~iwd~~----~~~~~~~~~~h~ 483 (512)
.++++++.|++.+|||++.-.-+ .+.....|...|.+.+|||.|-.|++.+.|..|+|||.. .-.+...+. |.
T Consensus 336 ~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~-Hn 414 (498)
T KOG4328|consen 336 WFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIP-HN 414 (498)
T ss_pred hheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccceee-cc
Confidence 99999999999999999832111 234444567789999999998889999999999999983 333444443 32
Q ss_pred C------CeEEEEEcCCCCeEEEEECCCeEEEecC
Q 010362 484 K------DVIGVTHHPHRNLLATYGEDCTMKLWKP 512 (512)
Q Consensus 484 ~------~v~~v~~~p~~~~l~s~~~dg~i~iW~~ 512 (512)
. ......|.|+..++++|-.-..|-|+|+
T Consensus 415 ~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~ 449 (498)
T KOG4328|consen 415 NRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDG 449 (498)
T ss_pred CcccccccchhheeCCCccEEEEeccCcceeEEcC
Confidence 1 2345689999999999988888888874
No 162
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.89 E-value=1.7e-22 Score=183.58 Aligned_cols=259 Identities=22% Similarity=0.378 Sum_probs=192.9
Q ss_pred EEEecCcCceEEEEECCCCCEEEEEeCCCeEEEEEcCCCeeeccccccccceeeccCcceeEEEEcCCCCeEEEEeCCCe
Q 010362 207 TIKFGTKSHAECARFSPDGQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQDGK 286 (512)
Q Consensus 207 ~~~~~h~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~ 286 (512)
++. .|.+.|+.++|+|....|++++.||++.+|++............+..+|.+|.++|.|+++.+++..+.+|+.||+
T Consensus 289 tl~-s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~ 367 (577)
T KOG0642|consen 289 TLR-SHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGT 367 (577)
T ss_pred eee-cchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCce
Confidence 444 7889999999999999999999999999999955444445566778899999999999999999999999999999
Q ss_pred EEEEEccCC---------eeeEEeccccccCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeeC--CccceeEEE
Q 010362 287 IKVWRIRSG---------QCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRG--HSSYVNDAI 355 (512)
Q Consensus 287 i~vwd~~~~---------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~--~~~~v~~~~ 355 (512)
|+.|++... ..+.....+|.+.++.+++++....|++++.||+++.|+.....+ .++.. ..+...++.
T Consensus 368 I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsvd 446 (577)
T KOG0642|consen 368 IRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLSVD 446 (577)
T ss_pred eeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCccccCCcceEe
Confidence 999966421 122222348999999999999999999999999999999866555 33332 223345555
Q ss_pred EcCCC-CEEEEEeCCCcEEEEeCCCCceeeecCCCCCCCCCCceeEEEEEcCCCCCeEEEEcCCCcEEEEecCCeEEEEe
Q 010362 356 FTNDG-SRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQVVKSF 434 (512)
Q Consensus 356 ~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~ 434 (512)
+.... ...++ +.....+++.+.+....+. +.+.. ..+
T Consensus 447 ~~ss~~a~~~~---s~~~~~~~~~~~ev~s~~~----------------~~~s~--------~~~--------------- 484 (577)
T KOG0642|consen 447 RTSSRPAHSLA---SFRFGYTSIDDMEVVSDLL----------------IFESS--------ASP--------------- 484 (577)
T ss_pred eccchhHhhhh---hcccccccchhhhhhhhee----------------ecccc--------CCC---------------
Confidence 54332 12222 2333333333322211111 00000 000
Q ss_pred eCCcccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCeeEEeccccCCCeEEEEEcCCCCeEEEEECCCeEEEec
Q 010362 435 SSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPHRNLLATYGEDCTMKLWK 511 (512)
Q Consensus 435 ~~~~~~~~~~~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~~~dg~i~iW~ 511 (512)
.......+..+.+.|.+.+.+++.+|+.|+++|..+++++.....|...++++++.|+|.+|++++.||.+++|+
T Consensus 485 --~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~k 559 (577)
T KOG0642|consen 485 --GPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWK 559 (577)
T ss_pred --cccccCccceEEecCCCCeeEecccCCceecccccccccchheeeccceecceeecCCCceEEeecCCceeehhh
Confidence 000123466778889999999999999999999999999999999999999999999999999999999999996
No 163
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.89 E-value=4e-21 Score=160.41 Aligned_cols=279 Identities=19% Similarity=0.228 Sum_probs=192.7
Q ss_pred EecCcCceEEEEECC-CCCEEEEEeCC-------CeEEEEEcCCCeeecc-ccccccceee-ccCcceeEEEEcCCCCeE
Q 010362 209 KFGTKSHAECARFSP-DGQFLVSCSFD-------GFIEVWDYLSGKLKKD-LQYQADETFM-MHDETVLCIEFSRDSEML 278 (512)
Q Consensus 209 ~~~h~~~v~~~~~s~-~~~~l~sg~~d-------g~i~iwd~~~~~~~~~-~~~~~~~~~~-~h~~~v~~l~~s~~~~~l 278 (512)
-++|.+.|+.++-+| +.+.|+|+..+ -.+.||.+........ ........+. .+-+.|.|+.|.|++..+
T Consensus 59 f~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~kl 138 (370)
T KOG1007|consen 59 FFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSDKL 138 (370)
T ss_pred hhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCCee
Confidence 358899999999999 45566666432 2578998754322211 1111111222 355689999999999999
Q ss_pred EEEeCCCeEEEEEccCCee-eEEec----cccccCeEEEEEec--CCCEEEEEeCCCcEEEEeCCCCceeEEee-CCccc
Q 010362 279 ASGSQDGKIKVWRIRSGQC-LRRLE----RAHSEGVTSLVFSR--DGSQILSTSFDSTARIHGLKSGKLLKEFR-GHSSY 350 (512)
Q Consensus 279 ~s~~~dg~i~vwd~~~~~~-~~~~~----~~~~~~i~~~~~~~--~~~~l~~~~~dg~v~i~d~~~~~~~~~~~-~~~~~ 350 (512)
++-. |..|.+|++..+.. +..+. ..+....++-+|+| +|+.+++.+ |+++..||+++.+....+. .|...
T Consensus 139 asm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~-d~tl~~~D~RT~~~~~sI~dAHgq~ 216 (370)
T KOG1007|consen 139 ASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTS-DSTLQFWDLRTMKKNNSIEDAHGQR 216 (370)
T ss_pred EEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeC-CCcEEEEEccchhhhcchhhhhcce
Confidence 9876 88999999988765 33322 23456678889998 788887766 8999999999988777664 58889
Q ss_pred eeEEEEcCCCC-EEEEEeCCCcEEEEeCCCCceeeecCCCCCCCCCCceeEEEEEcCCCCCeEEEEcCCCcEEEEecCCe
Q 010362 351 VNDAIFTNDGS-RVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQ 429 (512)
Q Consensus 351 v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~ 429 (512)
|.++.|+|+.. +|++++.||.|++||.+..+ .+...+.+|...+.++.|+|....++++++.|..+.++....-
T Consensus 217 vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk-----~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~sv 291 (370)
T KOG1007|consen 217 VRDLDFNPNKQHILVTCGDDGYVRIWDTRKTK-----FPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSV 291 (370)
T ss_pred eeeccCCCCceEEEEEcCCCccEEEEeccCCC-----ccccccCCCceEEEEEEecCccceEEEecCCCceeEEEecccc
Confidence 99999999765 57889999999999999754 2333445788999999999999999999999999998876521
Q ss_pred EEEEeeCCcccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCeeEEeccccCCCeEEEEEcC-CCCeEEEEECCCeEE
Q 010362 430 VVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHP-HRNLLATYGEDCTMK 508 (512)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~p-~~~~l~s~~~dg~i~ 508 (512)
.... .+.+..|..-.--......++ -+. ...+.++..|...|.+++|+. |.-.||+-|.||++.
T Consensus 292 SSE~------------qi~~~~dese~e~~dseer~k--pL~-dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRvi 356 (370)
T KOG1007|consen 292 SSEQ------------QIEFEDDESESEDEDSEERVK--PLQ-DGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVI 356 (370)
T ss_pred cccc------------ccccccccccCcchhhHHhcc--ccc-ccccccccccccceEEEeeccCCCeeEEEeccCceEE
Confidence 1100 001100000000000000111 111 123456778999999999998 556889999999987
Q ss_pred E
Q 010362 509 L 509 (512)
Q Consensus 509 i 509 (512)
|
T Consensus 357 I 357 (370)
T KOG1007|consen 357 I 357 (370)
T ss_pred e
Confidence 6
No 164
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.88 E-value=1.7e-21 Score=172.02 Aligned_cols=204 Identities=17% Similarity=0.231 Sum_probs=166.0
Q ss_pred cCcCceEEEEECCC-CCEEEEEeCCCeEEEEEcCCCeeeccccccccceeeccCcceeEEEEcC-CCCeEEEEeCCCeEE
Q 010362 211 GTKSHAECARFSPD-GQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSR-DSEMLASGSQDGKIK 288 (512)
Q Consensus 211 ~h~~~v~~~~~s~~-~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~-~~~~l~s~~~dg~i~ 288 (512)
+|++.|.+++|+.. .+.||+||.|.+|++||+.+++....+. .|...|.+++|+| ....|++|+.|++|.
T Consensus 241 gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~--------~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~ 312 (463)
T KOG0270|consen 241 GHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSIT--------HHGKKVQTLEWHPYEPSVLLSGSYDGTVA 312 (463)
T ss_pred cchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcceehh--------hcCCceeEEEecCCCceEEEeccccceEE
Confidence 79999999999885 4689999999999999999998776554 3999999999999 567899999999999
Q ss_pred EEEccCCeeeEEeccccccCeEEEEEecC-CCEEEEEeCCCcEEEEeCCCC-ceeEEeeCCccceeEEEEcCC-CCEEEE
Q 010362 289 VWRIRSGQCLRRLERAHSEGVTSLVFSRD-GSQILSTSFDSTARIHGLKSG-KLLKEFRGHSSYVNDAIFTND-GSRVVT 365 (512)
Q Consensus 289 vwd~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~v~i~d~~~~-~~~~~~~~~~~~v~~~~~~~~-~~~l~~ 365 (512)
+.|.+........- ...+.|..++|.|. ...+++++.||+|+-+|+|.. +++.+++.|.++|.++++++. ...+++
T Consensus 313 l~D~R~~~~s~~~w-k~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t 391 (463)
T KOG0270|consen 313 LKDCRDPSNSGKEW-KFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLST 391 (463)
T ss_pred eeeccCccccCceE-EeccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceee
Confidence 99998533222221 35688999999995 466788889999999999876 899999999999999999874 356889
Q ss_pred EeCCCcEEEEeCCCCceeeecCCCCCCCCCCceeEEEEEcCCCCCeEEEEcCCCcEEEEecC
Q 010362 366 ASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQ 427 (512)
Q Consensus 366 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~~~~~ 427 (512)
++.|+.+++|++............. .-+...|.++.|+....++.|+..+.+++||+.
T Consensus 392 ~s~d~~Vklw~~~~~~~~~v~~~~~----~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~ 449 (463)
T KOG0270|consen 392 ASTDKVVKLWKFDVDSPKSVKEHSF----KLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIF 449 (463)
T ss_pred ccccceEEEEeecCCCCcccccccc----cccceeecccCCCcceEEEecCccceEEEeecc
Confidence 9999999999987654322221111 123367888889888899999999999999986
No 165
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=6e-21 Score=161.29 Aligned_cols=196 Identities=13% Similarity=0.242 Sum_probs=167.1
Q ss_pred eEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeeCCccceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeecCC
Q 010362 309 VTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKP 388 (512)
Q Consensus 309 i~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 388 (512)
..|+.|++.|.++|+|+.||.|.+||+.+...-+.+.+|..+|++++|+++|+.|+|++.|..|.+||+..|.+.+.+..
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rirf 105 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIRF 105 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEEc
Confidence 78999999999999999999999999999998899999999999999999999999999999999999999998888764
Q ss_pred CCCCCCCCceeEEEEEcCCCCCeEEEEcCCCcEEEEecCCeEEEEeeCCccc--CCcEEEEEECCCCCEEEEEeCCCeEE
Q 010362 389 PPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQVVKSFSSGKRE--GGDFVAACVSPKGEWIYCVGEDRNLY 466 (512)
Q Consensus 389 ~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~--~~~~~~~~~s~~g~~l~~g~~dg~i~ 466 (512)
.++|....|+|...+..+++-.+..-.+.++....-..+...... +....+..|.+.|++|++|...|.+.
T Consensus 106 -------~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkll 178 (405)
T KOG1273|consen 106 -------DSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLL 178 (405)
T ss_pred -------cCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEE
Confidence 468999999999988888887777777777664322222222111 11223346899999999999999999
Q ss_pred EEEcCCCeeEEeccccC-CCeEEEEEcCCCCeEEEEECCCeEEEec
Q 010362 467 CFSHQSGKLEHLMKVHE-KDVIGVTHHPHRNLLATYGEDCTMKLWK 511 (512)
Q Consensus 467 iwd~~~~~~~~~~~~h~-~~v~~v~~~p~~~~l~s~~~dg~i~iW~ 511 (512)
++|..+-+++..++-.. ..|..+.++..|++|+.-+.|..||.|+
T Consensus 179 v~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye 224 (405)
T KOG1273|consen 179 VYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYE 224 (405)
T ss_pred EEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEe
Confidence 99999999998887665 7899999999999999999999999986
No 166
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.88 E-value=6.1e-21 Score=166.01 Aligned_cols=214 Identities=21% Similarity=0.322 Sum_probs=174.2
Q ss_pred ecCcCceEEEEECC-CCCEEEEEeCCCeEEEEEcCCCeeeccccccccceeeccCcceeEEEEcCC-CCeEEEEeCCCeE
Q 010362 210 FGTKSHAECARFSP-DGQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRD-SEMLASGSQDGKI 287 (512)
Q Consensus 210 ~~h~~~v~~~~~s~-~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~-~~~l~s~~~dg~i 287 (512)
.||+++|..++|+| +...||+||.|.+|.||.+-.+.+...+. .+...+.||...|--++|+|. .+.|++++.|.+|
T Consensus 78 ~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~lt-epvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v 156 (472)
T KOG0303|consen 78 CGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLT-EPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTV 156 (472)
T ss_pred cCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcc-cceEEEeecceeEEEEeecccchhhHhhccCCceE
Confidence 39999999999999 66789999999999999998877766665 667789999999999999995 4688999999999
Q ss_pred EEEEccCCeeeEEeccccccCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeeCCcc-ceeEEEEcCCCCEEEEE
Q 010362 288 KVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRGHSS-YVNDAIFTNDGSRVVTA 366 (512)
Q Consensus 288 ~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~ 366 (512)
.+||+.+|+.+.++. |...|.+++|+.||.++++++.|..|++||.++++.+..-.+|.+ .-..+.|-.+|..+-||
T Consensus 157 ~iWnv~tgeali~l~--hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~tTG 234 (472)
T KOG0303|consen 157 SIWNVGTGEALITLD--HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFTTG 234 (472)
T ss_pred EEEeccCCceeeecC--CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCceeeec
Confidence 999999999888875 999999999999999999999999999999999999998888865 44556788888844444
Q ss_pred e---CCCcEEEEeCCCCceeeecCCCCCCCCCCceeEEEEEcCCCCCeEEEEcCCCcEEEEecCCeE
Q 010362 367 S---SDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQV 430 (512)
Q Consensus 367 ~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~ 430 (512)
- .+..+.+||..+......+... .....|.--.+.++..-+.++|-.|+.|+.|.+....
T Consensus 235 fsr~seRq~aLwdp~nl~eP~~~~el----DtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~ 297 (472)
T KOG0303|consen 235 FSRMSERQIALWDPNNLEEPIALQEL----DTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEP 297 (472)
T ss_pred cccccccceeccCcccccCcceeEEe----ccCCceEEeeecCCCCEEEEEecCCcceEEEEecCCC
Confidence 2 3678999998765432222211 1234455556677776667788899999999998544
No 167
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.87 E-value=5.2e-21 Score=162.61 Aligned_cols=250 Identities=20% Similarity=0.369 Sum_probs=186.2
Q ss_pred cCcCceEEEEECCC----CCEEEEEeCCCeEEEEEcCCCeeeccccccccceeeccCcceeEEEEcCCC-CeEEEEeCCC
Q 010362 211 GTKSHAECARFSPD----GQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDS-EMLASGSQDG 285 (512)
Q Consensus 211 ~h~~~v~~~~~s~~----~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~-~~l~s~~~dg 285 (512)
.|......++|+-+ ..++|+|+.-|.|+|.|+.+++... .+.+|...|+.+.+.|+. +++++||.|.
T Consensus 87 d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~--------~~~ghG~sINeik~~p~~~qlvls~SkD~ 158 (385)
T KOG1034|consen 87 DHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSK--------NYRGHGGSINEIKFHPDRPQLVLSASKDH 158 (385)
T ss_pred CCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhcc--------ceeccCccchhhhcCCCCCcEEEEecCCc
Confidence 35666667777643 4589999999999999999887665 455699999999999964 7899999999
Q ss_pred eEEEEEccCCeeeEEec--cccccCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeE---------------------
Q 010362 286 KIKVWRIRSGQCLRRLE--RAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLK--------------------- 342 (512)
Q Consensus 286 ~i~vwd~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~--------------------- 342 (512)
+|++|+++++.++..+- .+|...|.++.|+++|.+|++++.|.++++|++...+...
T Consensus 159 svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~ 238 (385)
T KOG1034|consen 159 SVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPK 238 (385)
T ss_pred eEEEEeccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccc
Confidence 99999999999988774 3789999999999999999999999999999997322100
Q ss_pred -------EeeCCccceeEEEEcCCCCEEEEEeCCCcEEEEeC-CCCceeeecCCCCCC-------CCCCceeEEE--EEc
Q 010362 343 -------EFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDL-KSTDCLQTFKPPPPL-------RGGDASVNSV--HLF 405 (512)
Q Consensus 343 -------~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~-~~~~~~~~~~~~~~~-------~~~~~~i~~~--~~~ 405 (512)
+-..|...|-|+.|- |+++++-+-++.|..|.. +-.+.+....++... .-....+.-+ ++.
T Consensus 239 ~~fp~fst~diHrnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d 316 (385)
T KOG1034|consen 239 THFPDFSTTDIHRNYVDCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFD 316 (385)
T ss_pred cccccccccccccchHHHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeec
Confidence 112356666666665 578999888999999987 323322222222110 0112233333 344
Q ss_pred CCCCCeEEEEcCCCcEEEEecCCeEE--EEeeCCcccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcC
Q 010362 406 PKNPDHIVVCNKTSSIYIMTLQGQVV--KSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQ 471 (512)
Q Consensus 406 ~~~~~~l~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~dg~i~iwd~~ 471 (512)
|-. +.++.+...|.+++||++.... .........+..|...+||.||.+|+..++|+.|.-||..
T Consensus 317 ~~~-~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 317 PWQ-KMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred HHH-HHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence 544 7899999999999999984322 2222233346678899999999999999999999999864
No 168
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.87 E-value=1.3e-18 Score=170.40 Aligned_cols=283 Identities=31% Similarity=0.535 Sum_probs=224.2
Q ss_pred EecCcCceEEEEECCCCCEEEEEeCCCeEEEEEcCCCe-eeccccccccceeeccC-cceeEEEE-cCCCC-eEEEEeC-
Q 010362 209 KFGTKSHAECARFSPDGQFLVSCSFDGFIEVWDYLSGK-LKKDLQYQADETFMMHD-ETVLCIEF-SRDSE-MLASGSQ- 283 (512)
Q Consensus 209 ~~~h~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~h~-~~v~~l~~-s~~~~-~l~s~~~- 283 (512)
..+|...+.++.|.+.+..++.++.|+.+.+|+...+. ....+ .++. ..+..+.+ ++++. .++..+.
T Consensus 61 ~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (466)
T COG2319 61 LRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSL--------EGLHDSSVSKLALSSPDGNSILLASSSL 132 (466)
T ss_pred eeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEE--------eccCCCceeeEEEECCCcceEEeccCCC
Confidence 34899999999999999999999999999999988775 33222 2222 36777777 88887 5555455
Q ss_pred CCeEEEEEccC-CeeeEEeccccccCeEEEEEecCCCEEEEEeC-CCcEEEEeCCCCceeEEeeCCccceeEEEEcCCCC
Q 010362 284 DGKIKVWRIRS-GQCLRRLERAHSEGVTSLVFSRDGSQILSTSF-DSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGS 361 (512)
Q Consensus 284 dg~i~vwd~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~ 361 (512)
|+.+.+|+... ......+. .|...|..++|+|++..+++++. |+.+++|+...+..+..+.+|...|.+++|+|++.
T Consensus 133 d~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 211 (466)
T COG2319 133 DGTVKLWDLSTPGKLIRTLE-GHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGG 211 (466)
T ss_pred CccEEEEEecCCCeEEEEEe-cCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcc
Confidence 99999999988 66666665 89999999999999998888885 99999999998889999999999999999999998
Q ss_pred -EEEEEeCCCcEEEEeCCCCceeee-cCCCCCCCCCCceeEEEEEcCCCCCeEEEEcCCCcEEEEecCCeE--EEEeeCC
Q 010362 362 -RVVTASSDCTVKVWDLKSTDCLQT-FKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQV--VKSFSSG 437 (512)
Q Consensus 362 -~l~~~~~dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~--~~~~~~~ 437 (512)
.+++++.|+.|++||...+..... +. ++.... -..++|++ ..+++++.++.+++|+..... ....
T Consensus 212 ~~~~~~~~d~~i~~wd~~~~~~~~~~~~------~~~~~~-~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~~~--- 280 (466)
T COG2319 212 LLIASGSSDGTIRLWDLSTGKLLRSTLS------GHSDSV-VSSFSPDG-SLLASGSSDGTIRLWDLRSSSSLLRTL--- 280 (466)
T ss_pred eEEEEecCCCcEEEEECCCCcEEeeecC------CCCcce-eEeECCCC-CEEEEecCCCcEEEeeecCCCcEEEEE---
Confidence 555558999999999886666552 32 333333 22788887 788899999999999998433 2333
Q ss_pred cccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCeeEEecc--ccCCCeEEEEEcCCCCeEEEE-ECCCeEEEec
Q 010362 438 KREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMK--VHEKDVIGVTHHPHRNLLATY-GEDCTMKLWK 511 (512)
Q Consensus 438 ~~~~~~~~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~~--~h~~~v~~v~~~p~~~~l~s~-~~dg~i~iW~ 511 (512)
..+...+.++.++|++..+++++.|+.+.+||..+........ .|...+..+.|.+++..++.+ ..|+.+.+|+
T Consensus 281 ~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 357 (466)
T COG2319 281 SGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWD 357 (466)
T ss_pred ecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeee
Confidence 3336778899999999999889888999999998887776665 788889999994342455555 6889999886
No 169
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.87 E-value=3.8e-20 Score=176.96 Aligned_cols=269 Identities=18% Similarity=0.203 Sum_probs=196.7
Q ss_pred cccccccCccccceEEEecCcCceEEEEECC-CCCEEEEEeCCCeEEEEEcCCCeee--ccccccccceeeccCcceeEE
Q 010362 193 KQDVEDMYPTTLSHTIKFGTKSHAECARFSP-DGQFLVSCSFDGFIEVWDYLSGKLK--KDLQYQADETFMMHDETVLCI 269 (512)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~-~~~~l~sg~~dg~i~iwd~~~~~~~--~~~~~~~~~~~~~h~~~v~~l 269 (512)
...+|+.... ..-.+.+.....|+|+.|+| +..++|.|+.+|.|.+||+..+... ..+. .....|..+++.+
T Consensus 223 ~~~vW~~~~p-~~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls----~~~~sh~~~v~~v 297 (555)
T KOG1587|consen 223 VLLVWSLKNP-NTPELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLS----ALEVSHSEPVTAV 297 (555)
T ss_pred eEEEEecCCC-CCceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccc----cccccCCcCeEEE
Confidence 3455665555 22233347788999999999 6678888999999999999877652 2222 1234499999999
Q ss_pred EEcCCCC--eEEEEeCCCeEEEEEccCCeee------EEe-----ccccccCeEEEEEec-CCCEEEEEeCCCcEEEEeC
Q 010362 270 EFSRDSE--MLASGSQDGKIKVWRIRSGQCL------RRL-----ERAHSEGVTSLVFSR-DGSQILSTSFDSTARIHGL 335 (512)
Q Consensus 270 ~~s~~~~--~l~s~~~dg~i~vwd~~~~~~~------~~~-----~~~~~~~i~~~~~~~-~~~~l~~~~~dg~v~i~d~ 335 (512)
.|..+-. -+++++.||.|..|+++.-... ... .......+++++|.+ +...+++|+.+|.|..-+-
T Consensus 298 vW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r 377 (555)
T KOG1587|consen 298 VWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCR 377 (555)
T ss_pred EEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEec
Confidence 9987544 4999999999999987643221 000 012345689999988 5677999999999887433
Q ss_pred CCC--------ceeEEeeCCccceeEEEEcCCCCEEEEEeCCCcEEEEeCC-CCceeeecCCCCCCCCCCceeEEEEEcC
Q 010362 336 KSG--------KLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLK-STDCLQTFKPPPPLRGGDASVNSVHLFP 406 (512)
Q Consensus 336 ~~~--------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 406 (512)
... +....+..|.++|.++.++|-+..++..+.|.+++||... ...++..+. .+...+++++|+|
T Consensus 378 ~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~------~~~~~v~~vaWSp 451 (555)
T KOG1587|consen 378 KGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLD------SSPDYVTDVAWSP 451 (555)
T ss_pred cCCcccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhh------hccceeeeeEEcC
Confidence 222 1233556688999999999977766666669999999877 444443333 3345699999999
Q ss_pred CCCCeEEEEcCCCcEEEEecCCeEEEEeeCCcccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCC
Q 010362 407 KNPDHIVVCNKTSSIYIMTLQGQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQS 472 (512)
Q Consensus 407 ~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~dg~i~iwd~~~ 472 (512)
..+..++++..+|.+.+||+....................+.|+++|+.|++|...|.+++|++..
T Consensus 452 trpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 452 TRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred cCceEEEEEcCCCceehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence 999999999999999999998554443333333345567788899999999999999999999864
No 170
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=3.3e-19 Score=170.80 Aligned_cols=299 Identities=15% Similarity=0.248 Sum_probs=213.3
Q ss_pred ceEEEecCcCceEEEEECCCCCEEEEEeCCCeEEEEEcCCCeeeccccccccceeeccCcceeEEEEcCCCCeEEEEeCC
Q 010362 205 SHTIKFGTKSHAECARFSPDGQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQD 284 (512)
Q Consensus 205 ~~~~~~~h~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d 284 (512)
.+.+...|.-.++|.++||+++++|+|..||.|.+|.-...+ .. ......+.-|...|.+++|+++|.+|++|+..
T Consensus 197 ~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~-~~---~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E 272 (792)
T KOG1963|consen 197 SRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSS-DD---SETCTLLHWHHDEVNSLSFSSDGAYLLSGGRE 272 (792)
T ss_pred cchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccc-cc---cccceEEEecccccceeEEecCCceEeecccc
Confidence 334445777789999999999999999999999999632211 11 11223566799999999999999999999999
Q ss_pred CeEEEEEccCCeeeEEeccccccCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeeC-----------CccceeE
Q 010362 285 GKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRG-----------HSSYVND 353 (512)
Q Consensus 285 g~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~-----------~~~~v~~ 353 (512)
|.+.+|.+.+++ +++...-.++|..+.++||+.+.+....|+.|.+....+.....++.+ ..+-.+.
T Consensus 273 ~VLv~Wq~~T~~--kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~ 350 (792)
T KOG1963|consen 273 GVLVLWQLETGK--KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTG 350 (792)
T ss_pred eEEEEEeecCCC--cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCcccccccccccee
Confidence 999999999998 445446789999999999999999999999999998766555444433 2334677
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEeCCCCceeeecCCCCCCC-----CCCceeEEEEEcCCCCCeEEEEc--------C--C
Q 010362 354 AIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLR-----GGDASVNSVHLFPKNPDHIVVCN--------K--T 418 (512)
Q Consensus 354 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~-----~~~~~i~~~~~~~~~~~~l~~~~--------~--~ 418 (512)
++++|..+.++-.+..|.|.+||+-+...+..+....... .+...+++++.+..+ .++++.. . .
T Consensus 351 ~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~g-s~maT~E~~~d~~~~~~~e 429 (792)
T KOG1963|consen 351 VSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFG-SWMATLEARIDKFNFFDGE 429 (792)
T ss_pred EEEcCCCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccc-eEEEEeeeeehhhhccCce
Confidence 8899977788888999999999999877665544322111 223355666665553 5665543 2 3
Q ss_pred CcEEEEecCCe----EEEEeeCCcccCCcEEEEEE-CC-CCCEEEEEeCCCeEEEEEcCCCe----------eEEecccc
Q 010362 419 SSIYIMTLQGQ----VVKSFSSGKREGGDFVAACV-SP-KGEWIYCVGEDRNLYCFSHQSGK----------LEHLMKVH 482 (512)
Q Consensus 419 ~~i~~~~~~~~----~~~~~~~~~~~~~~~~~~~~-s~-~g~~l~~g~~dg~i~iwd~~~~~----------~~~~~~~h 482 (512)
-.+++|-..+. .+.+.... +|+..+...++ ++ .....++++.||.+++|-+.+.+ +...-.-|
T Consensus 430 ~~LKFW~~n~~~kt~~L~T~I~~-PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~ 508 (792)
T KOG1963|consen 430 VSLKFWQYNPNSKTFILNTKINN-PHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYH 508 (792)
T ss_pred EEEEEEEEcCCcceeEEEEEEec-CCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccc
Confidence 35788877632 22222222 23333444444 33 33388999999999999884322 22222237
Q ss_pred CCCeEEEEEcCCCCeEEEEECCCeEEEecC
Q 010362 483 EKDVIGVTHHPHRNLLATYGEDCTMKLWKP 512 (512)
Q Consensus 483 ~~~v~~v~~~p~~~~l~s~~~dg~i~iW~~ 512 (512)
..++++.+|+.||..| ++|.|++|.+||+
T Consensus 509 k~~i~a~~fs~dGsll-a~s~~~~Itiwd~ 537 (792)
T KOG1963|consen 509 KTPITALCFSQDGSLL-AVSFDDTITIWDY 537 (792)
T ss_pred cCcccchhhcCCCcEE-EEecCCEEEEecC
Confidence 8899999999999665 5677889999996
No 171
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=4.1e-19 Score=144.90 Aligned_cols=282 Identities=17% Similarity=0.261 Sum_probs=197.7
Q ss_pred eEEEEECCCCCEEEEEeCCCeEEEEEcCCCeeeccc--cccccceeeccCcceeEEEEcCCCCeEEEEeCCCeEEEEEcc
Q 010362 216 AECARFSPDGQFLVSCSFDGFIEVWDYLSGKLKKDL--QYQADETFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWRIR 293 (512)
Q Consensus 216 v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~--~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~vwd~~ 293 (512)
|..-+++|.+++|++|+.+|.|.+..+++-...... ...+.-...+|.++|..++|. ..+|++|+ ||.|+-|...
T Consensus 13 vf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw~W~ 89 (325)
T KOG0649|consen 13 VFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGWEWN 89 (325)
T ss_pred HHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeecc-CceEEEeeeh
Confidence 556689999999999999999999987542111110 011122346799999999998 44677776 6999999765
Q ss_pred CCee------eEEe-cccc-----ccCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeeCCccceeEEEEcCCCC
Q 010362 294 SGQC------LRRL-ERAH-----SEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGS 361 (512)
Q Consensus 294 ~~~~------~~~~-~~~~-----~~~i~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~ 361 (512)
.... +... ...+ -..|+++...|..+-++.++.|+.++.||+++|+..+++++|+..|.++.-.....
T Consensus 90 E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~ 169 (325)
T KOG0649|consen 90 EEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANG 169 (325)
T ss_pred hhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCc
Confidence 3321 1111 1111 24588999999877777777899999999999999999999999999999866666
Q ss_pred EEEEEeCCCcEEEEeCCCCceeeecCCCCCCC---C-CCceeEEEEEcCCCCCeEEEEcCCCcEEEEecCCeEEEEeeCC
Q 010362 362 RVVTASSDCTVKVWDLKSTDCLQTFKPPPPLR---G-GDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQVVKSFSSG 437 (512)
Q Consensus 362 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~---~-~~~~i~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~ 437 (512)
.+++|+.||++++||.++++++..+.+..... . ....|.+++.+ .-.++|+....+.+|.++..........
T Consensus 170 qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~----edWlvCGgGp~lslwhLrsse~t~vfpi 245 (325)
T KOG0649|consen 170 QILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVN----EDWLVCGGGPKLSLWHLRSSESTCVFPI 245 (325)
T ss_pred ceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEecc----CceEEecCCCceeEEeccCCCceEEEec
Confidence 79999999999999999999988877543211 1 22345555543 3345677778899999995544433332
Q ss_pred cccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCeeEEeccccCCCeEEEEEcCCC-CeEEEEECCCeEEEe
Q 010362 438 KREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPHR-NLLATYGEDCTMKLW 510 (512)
Q Consensus 438 ~~~~~~~~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~p~~-~~l~s~~~dg~i~iW 510 (512)
+ ..+..+.|. ...++++++.+.|.-|.+. |.+....+..+....+..|+... +++-.++....+.|.
T Consensus 246 p---a~v~~v~F~--~d~vl~~G~g~~v~~~~l~-Gvl~a~ip~~s~~c~s~s~~~~p~k~~s~ag~s~~~~i~ 313 (325)
T KOG0649|consen 246 P---ARVHLVDFV--DDCVLIGGEGNHVQSYTLN-GVLQANIPVESTACYSASWQTSPIKFISIAGFSNKLHIL 313 (325)
T ss_pred c---cceeEeeee--cceEEEeccccceeeeeec-cEEEEeccCCccceeeecccCCceEEEEecccceeeeee
Confidence 2 235555553 4568888888889999864 66666666555566667776544 355556677777665
No 172
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.86 E-value=6.2e-18 Score=165.66 Aligned_cols=301 Identities=31% Similarity=0.491 Sum_probs=229.8
Q ss_pred ccccccccCc-cccceEEEecCcCceEEEEECCCCCEEEEEeC-CCeEEEEEcCCCeeeccccccccceeeccCcceeEE
Q 010362 192 MKQDVEDMYP-TTLSHTIKFGTKSHAECARFSPDGQFLVSCSF-DGFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCI 269 (512)
Q Consensus 192 ~~~~~~~~~~-~~~~~~~~~~h~~~v~~~~~s~~~~~l~sg~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l 269 (512)
.....|+... ......+. .|...|.+++|+|++.++++++. |+.+++|+...+.... .+.+|...|.++
T Consensus 134 ~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~v~~~ 204 (466)
T COG2319 134 GTVKLWDLSTPGKLIRTLE-GHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLS--------TLAGHTDPVSSL 204 (466)
T ss_pred ccEEEEEecCCCeEEEEEe-cCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEE--------eeccCCCceEEE
Confidence 3444555544 34444444 99999999999999999999885 9999999998754443 334489999999
Q ss_pred EEcCCCC-eEEEEeCCCeEEEEEccCCeeeE-EeccccccCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCce-eEEeeC
Q 010362 270 EFSRDSE-MLASGSQDGKIKVWRIRSGQCLR-RLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKL-LKEFRG 346 (512)
Q Consensus 270 ~~s~~~~-~l~s~~~dg~i~vwd~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~-~~~~~~ 346 (512)
+|+|++. .+++++.|+.|++||...+.... .+. .|.... ...|+|++..+++++.|+.+++|+.+.... ...+.+
T Consensus 205 ~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~ 282 (466)
T COG2319 205 AFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLS-GHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSG 282 (466)
T ss_pred EEcCCcceEEEEecCCCcEEEEECCCCcEEeeecC-CCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEec
Confidence 9999998 55665899999999988787777 454 666664 338999998899999999999999987665 444467
Q ss_pred CccceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeecCCCCCCCCCCceeEEEEEcCCCCCeEEEE-cCCCcEEEEe
Q 010362 347 HSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVC-NKTSSIYIMT 425 (512)
Q Consensus 347 ~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~-~~~~~i~~~~ 425 (512)
|...+.++.|.|++..+++++.|+.+.+||..+........ ...+...+..+.+ +.....++.+ ..++.+.+|+
T Consensus 283 ~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~-~~~~~~~~~~~~~d~~~~~~~ 357 (466)
T COG2319 283 HSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLT----LKGHEGPVSSLSF-SPDGSLLVSGGSDDGTIRLWD 357 (466)
T ss_pred CCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEee----ecccCCceEEEEE-CCCCCEEEEeecCCCcEEeee
Confidence 88899999999988888889999899999988876555544 1234457888888 5322445444 6778899999
Q ss_pred cCCeEEEEeeCCcccCCcEEEEEECCCCCEEEE-EeCCCeEEEEEcCCCeeEEeccccCCCeEEEEEcCCCCeEEEEECC
Q 010362 426 LQGQVVKSFSSGKREGGDFVAACVSPKGEWIYC-VGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPHRNLLATYGED 504 (512)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~-g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~~~d 504 (512)
............ ...+..+.+++ ...++. +..++.+.+|+............+...+....+.+++..+++++.+
T Consensus 358 ~~~~~~~~~~~~---~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (466)
T COG2319 358 LRTGKPLKTLEG---HSNVLSVSFSP-DGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSD 433 (466)
T ss_pred cCCCceeEEecC---CceEEEEEECC-CCCEEEEecCCCceEEEecccCeeeeeccCCCCcEEEEEECCCCcEEEEecCC
Confidence 985541111111 11177888888 544444 6789999999999988877776554788999999999999999999
Q ss_pred CeEEEecC
Q 010362 505 CTMKLWKP 512 (512)
Q Consensus 505 g~i~iW~~ 512 (512)
+.+++|+.
T Consensus 434 ~~~~~~~~ 441 (466)
T COG2319 434 NTIRLWDL 441 (466)
T ss_pred CcEEEEec
Confidence 99999974
No 173
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.86 E-value=5.7e-21 Score=187.72 Aligned_cols=254 Identities=19% Similarity=0.274 Sum_probs=196.7
Q ss_pred cCcCceEEEEECCCCCE----EEEEeCCCeEEEEEcCCCeeeccccccccceeeccCcceeEEEEcCCCC-eEEEEeCCC
Q 010362 211 GTKSHAECARFSPDGQF----LVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSE-MLASGSQDG 285 (512)
Q Consensus 211 ~h~~~v~~~~~s~~~~~----l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~-~l~s~~~dg 285 (512)
........++|.+.|.. ||.|..||.|.+||...- +..-......+...|.+.|..+.|++... +||+|+.||
T Consensus 62 ~s~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~--~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~g 139 (1049)
T KOG0307|consen 62 QSSNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASI--IANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDG 139 (1049)
T ss_pred cccccceeeeecccCCCccceeeccccCCceEEecchhh--ccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCC
Confidence 34556788999997765 888999999999997652 11122223335556999999999999654 999999999
Q ss_pred eEEEEEccCCeeeEEe-ccccccCeEEEEEecC-CCEEEEEeCCCcEEEEeCCCCceeEEeeCCcc--ceeEEEEcCCCC
Q 010362 286 KIKVWRIRSGQCLRRL-ERAHSEGVTSLVFSRD-GSQILSTSFDSTARIHGLKSGKLLKEFRGHSS--YVNDAIFTNDGS 361 (512)
Q Consensus 286 ~i~vwd~~~~~~~~~~-~~~~~~~i~~~~~~~~-~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~--~v~~~~~~~~~~ 361 (512)
.|.|||+.+-+.-... .......|.+++|+.. .+.|++++.+|.+.|||++..+.+..+..+.+ .+..+.|+|+..
T Consensus 140 eI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~a 219 (1049)
T KOG0307|consen 140 EILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHA 219 (1049)
T ss_pred cEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCc
Confidence 9999999875544333 2235678999999974 56788899999999999999988887776644 477899999764
Q ss_pred -EEEEEeCCC---cEEEEeCCCCceeeecCCCCCCCCCCceeEEEEEcCCCCCeEEEEcCCCcEEEEecCC-eEEEEeeC
Q 010362 362 -RVVTASSDC---TVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQG-QVVKSFSS 436 (512)
Q Consensus 362 -~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~~~~~~-~~~~~~~~ 436 (512)
.+++++.|. .|.+||+|.... +...+.+|...|.++.|++.++.++++++.|+++.+|+.+. ..+..+..
T Consensus 220 Tql~~As~dd~~PviqlWDlR~ass-----P~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~ 294 (1049)
T KOG0307|consen 220 TQLLVASGDDSAPVIQLWDLRFASS-----PLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPA 294 (1049)
T ss_pred eeeeeecCCCCCceeEeecccccCC-----chhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCC
Confidence 566666553 599999986432 22233578999999999999999999999999999999984 44444443
Q ss_pred CcccCCcEEEEEECCCCC-EEEEEeCCCeEEEEEcCCCe
Q 010362 437 GKREGGDFVAACVSPKGE-WIYCVGEDRNLYCFSHQSGK 474 (512)
Q Consensus 437 ~~~~~~~~~~~~~s~~g~-~l~~g~~dg~i~iwd~~~~~ 474 (512)
.+..+..+.|.|... .+++.+-||.|.||.+.++.
T Consensus 295 ---~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 295 ---QGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred ---CCcceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence 356688999999766 77888899999999987654
No 174
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.86 E-value=1.2e-18 Score=163.42 Aligned_cols=272 Identities=14% Similarity=0.168 Sum_probs=176.3
Q ss_pred EEEeCCCeEEEEEcCCCeeeccccccccceeeccCcceeEEEEcCCCCeEEEEe-CCCeEEEEEcc-CCee--eEEeccc
Q 010362 229 VSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGS-QDGKIKVWRIR-SGQC--LRRLERA 304 (512)
Q Consensus 229 ~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~-~dg~i~vwd~~-~~~~--~~~~~~~ 304 (512)
++...++.|.+|++.+......+ ..+. +.+....++++|++++|++++ .++.|.+|++. ++.. +... .
T Consensus 6 ~~~~~~~~I~~~~~~~~g~l~~~-----~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~--~ 77 (330)
T PRK11028 6 IASPESQQIHVWNLNHEGALTLL-----QVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAES--P 77 (330)
T ss_pred EEcCCCCCEEEEEECCCCceeee-----eEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeee--c
Confidence 34467899999999642211111 1121 345677899999999887765 47889999997 3432 2222 2
Q ss_pred cccCeEEEEEecCCCEEEEEeC-CCcEEEEeCCCCc----eeEEeeCCccceeEEEEcCCCCEEEEEe-CCCcEEEEeCC
Q 010362 305 HSEGVTSLVFSRDGSQILSTSF-DSTARIHGLKSGK----LLKEFRGHSSYVNDAIFTNDGSRVVTAS-SDCTVKVWDLK 378 (512)
Q Consensus 305 ~~~~i~~~~~~~~~~~l~~~~~-dg~v~i~d~~~~~----~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~ 378 (512)
.......++++|+++++++++. ++.|.+|++.+.. .+..+. +...+.+++++|+++++++++ .++.|.+||+.
T Consensus 78 ~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~ 156 (330)
T PRK11028 78 LPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLS 156 (330)
T ss_pred CCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEEC
Confidence 3345788999999999988775 7899999996422 222232 223467788999999886555 56899999998
Q ss_pred CCceeeecC-CCCCCCCCCceeEEEEEcCCCCCeEEEEcCCCcEEEEecCC--eE---EEEeeCCcc---cCCcEEEEEE
Q 010362 379 STDCLQTFK-PPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQG--QV---VKSFSSGKR---EGGDFVAACV 449 (512)
Q Consensus 379 ~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~~~~~~--~~---~~~~~~~~~---~~~~~~~~~~ 449 (512)
+...+.... ..... ........+.++|++..++++...++.|.+|+++. .. ...+..... .......+.+
T Consensus 157 ~~g~l~~~~~~~~~~-~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~ 235 (330)
T PRK11028 157 DDGHLVAQEPAEVTT-VEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHI 235 (330)
T ss_pred CCCcccccCCCceec-CCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEE
Confidence 633221100 00000 01234567899999854555555699999999972 22 222221111 1122346889
Q ss_pred CCCCCEEEEEe-CCCeEEEEEcCCCe----eEEeccccCCCeEEEEEcCCCCeEEEEEC-CCeEEEec
Q 010362 450 SPKGEWIYCVG-EDRNLYCFSHQSGK----LEHLMKVHEKDVIGVTHHPHRNLLATYGE-DCTMKLWK 511 (512)
Q Consensus 450 s~~g~~l~~g~-~dg~i~iwd~~~~~----~~~~~~~h~~~v~~v~~~p~~~~l~s~~~-dg~i~iW~ 511 (512)
+|+|++++++. .++.|.+|++.... .+..... ......+.++|++++|++++. +++|.+|+
T Consensus 236 ~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~-~~~p~~~~~~~dg~~l~va~~~~~~v~v~~ 302 (330)
T PRK11028 236 TPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPT-ETQPRGFNIDHSGKYLIAAGQKSHHISVYE 302 (330)
T ss_pred CCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEec-cccCCceEECCCCCEEEEEEccCCcEEEEE
Confidence 99999999986 47899999986432 2222221 134568999999998887775 89999985
No 175
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=2.9e-19 Score=151.42 Aligned_cols=248 Identities=21% Similarity=0.332 Sum_probs=178.5
Q ss_pred ceEEEEECCCCCEEEEEe-CCCeEEEEEcCCCee---ec-cccccccceeeccCcceeEEEEcCCCCeEEEEeCCCeEEE
Q 010362 215 HAECARFSPDGQFLVSCS-FDGFIEVWDYLSGKL---KK-DLQYQADETFMMHDETVLCIEFSRDSEMLASGSQDGKIKV 289 (512)
Q Consensus 215 ~v~~~~~s~~~~~l~sg~-~dg~i~iwd~~~~~~---~~-~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~v 289 (512)
..+.+.|+||-+-++... ...++++|.....+- .. .......+.-..|.-.|..+-...++.+|++++.|..|.+
T Consensus 134 hpT~V~FapDc~s~vv~~~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~l 213 (420)
T KOG2096|consen 134 HPTRVVFAPDCKSVVVSVKRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICL 213 (420)
T ss_pred CceEEEECCCcceEEEEEccCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEE
Confidence 467899999987666554 455899998643221 11 1111111122337778888888889999999999999999
Q ss_pred EEccCCeeeEEeccccccCeEEEEEecCCCEEEEEeCCCcEEEEeCC---CC-----ceeEEeeCCccceeEEEEcCCCC
Q 010362 290 WRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLK---SG-----KLLKEFRGHSSYVNDAIFTNDGS 361 (512)
Q Consensus 290 wd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~i~d~~---~~-----~~~~~~~~~~~~v~~~~~~~~~~ 361 (512)
|++. |+.+..+. .....-...+.+|+|+++++++..-.|++|.+- .| ..+..+++|.+.|..++|+|+..
T Consensus 214 w~lk-Gq~L~~id-tnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~ 291 (420)
T KOG2096|consen 214 WDLK-GQLLQSID-TNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSST 291 (420)
T ss_pred EecC-Cceeeeec-cccccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcc
Confidence 9998 88888886 556667788999999999999999999999862 22 23457889999999999999999
Q ss_pred EEEEEeCCCcEEEEeCCCC----ceeeecCCC-CCCCCCCceeEEEEEcCCCCCeEEEEcCCCcEEEEecC-CeEEEEee
Q 010362 362 RVVTASSDCTVKVWDLKST----DCLQTFKPP-PPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQ-GQVVKSFS 435 (512)
Q Consensus 362 ~l~~~~~dg~i~iwd~~~~----~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~~~~~-~~~~~~~~ 435 (512)
.+++.+.||++++||+.-. +-...++.. .++....+....+.++|.+ +.++ .+....+.++..+ ++....+.
T Consensus 292 r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g-~~lA-~s~gs~l~~~~se~g~~~~~~e 369 (420)
T KOG2096|consen 292 RAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSG-DSLA-VSFGSDLKVFASEDGKDYPELE 369 (420)
T ss_pred eeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCC-cEEE-eecCCceEEEEcccCccchhHH
Confidence 9999999999999997632 111111111 2222333444588999987 4444 3445567788776 44444443
Q ss_pred CCcccCCcEEEEEECCCCCEEEEEeCCCeEEEEE
Q 010362 436 SGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFS 469 (512)
Q Consensus 436 ~~~~~~~~~~~~~~s~~g~~l~~g~~dg~i~iwd 469 (512)
. .+...|.+++|+++|+++++++ |..++++.
T Consensus 370 ~--~h~~~Is~is~~~~g~~~atcG-dr~vrv~~ 400 (420)
T KOG2096|consen 370 D--IHSTTISSISYSSDGKYIATCG-DRYVRVIR 400 (420)
T ss_pred H--hhcCceeeEEecCCCcEEeeec-ceeeeeec
Confidence 3 3467799999999999999987 56777765
No 176
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.86 E-value=4e-20 Score=171.23 Aligned_cols=266 Identities=19% Similarity=0.307 Sum_probs=204.3
Q ss_pred CCCCCeeeeccCcccccccccccCccccceEEEecCcCceEEEEECCCCCEEEEEeCCCeEEEEEcCCCeeecccccccc
Q 010362 177 LPPGTQFDLFRGTAAMKQDVEDMYPTTLSHTIKFGTKSHAECARFSPDGQFLVSCSFDGFIEVWDYLSGKLKKDLQYQAD 256 (512)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~ 256 (512)
-|.|..+-+..|. ..-+.|...+...++++ +|++.|.|++|+.||+.+|+|+.|..|.+|+-.-.. .+.+
T Consensus 21 kPDGsqL~lAAg~---rlliyD~ndG~llqtLK-gHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG---~LkY--- 90 (1081)
T KOG1538|consen 21 KPDGTQLILAAGS---RLLVYDTSDGTLLQPLK-GHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEG---ILKY--- 90 (1081)
T ss_pred CCCCceEEEecCC---EEEEEeCCCcccccccc-cccceEEEEEEccCCceeccCCCceeEEEecccccc---eeee---
Confidence 3445554444433 33456666788888898 999999999999999999999999999999854322 2222
Q ss_pred ceeeccCcceeEEEEcCCCCeEEEEeCCCeEEEEEccCCeeeEEeccccccCeEEEEEecCCCEEEEEeCCCcEEEEeCC
Q 010362 257 ETFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLK 336 (512)
Q Consensus 257 ~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~i~d~~ 336 (512)
.|+..|.||.|+|-.+.|++|+-. ..-+|...... +.+. .....+.+++|..||.+++.|-.+|+|.+-+-
T Consensus 91 ----SH~D~IQCMsFNP~~h~LasCsLs-dFglWS~~qK~-V~K~--kss~R~~~CsWtnDGqylalG~~nGTIsiRNk- 161 (1081)
T KOG1538|consen 91 ----SHNDAIQCMSFNPITHQLASCSLS-DFGLWSPEQKS-VSKH--KSSSRIICCSWTNDGQYLALGMFNGTISIRNK- 161 (1081)
T ss_pred ----ccCCeeeEeecCchHHHhhhcchh-hccccChhhhh-HHhh--hhheeEEEeeecCCCcEEEEeccCceEEeecC-
Confidence 299999999999999999999854 56788765433 2222 24577999999999999999999999999875
Q ss_pred CCceeEEee---CCccceeEEEEcCCC-----CEEEEEeCCCcEEEEeCCCCceeeecCCCCCCCCCCceeEEEEEcCCC
Q 010362 337 SGKLLKEFR---GHSSYVNDAIFTNDG-----SRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKN 408 (512)
Q Consensus 337 ~~~~~~~~~---~~~~~v~~~~~~~~~-----~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 408 (512)
+++....+. +.+++|.+++|+|.. ..+++.....++.+|.+.... +..- ........++.+.|++
T Consensus 162 ~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~-Igk~------r~L~FdP~CisYf~NG 234 (1081)
T KOG1538|consen 162 NGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQ-IGKD------RALNFDPCCISYFTNG 234 (1081)
T ss_pred CCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEeccee-eccc------ccCCCCchhheeccCC
Confidence 555444443 367899999999853 467888888888888876432 2211 1233456788888988
Q ss_pred CCeEEEEcCCCcEEEEecCCeEEEEeeCCcccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCC
Q 010362 409 PDHIVVCNKTSSIYIMTLQGQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQS 472 (512)
Q Consensus 409 ~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~dg~i~iwd~~~ 472 (512)
.+++.|+.++.+.+|.-.|-.+.+... ....|..++..|++++++.|+.||+|..|++..
T Consensus 235 -Ey~LiGGsdk~L~~fTR~GvrLGTvg~---~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~f 294 (1081)
T KOG1538|consen 235 -EYILLGGSDKQLSLFTRDGVRLGTVGE---QDSWIWTVQAKPNSQYVVVGCQDGTIACYNLIF 294 (1081)
T ss_pred -cEEEEccCCCceEEEeecCeEEeeccc---cceeEEEEEEccCCceEEEEEccCeeehhhhHH
Confidence 899999999999999998877776655 356799999999999999999999999998753
No 177
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.86 E-value=8.9e-20 Score=158.83 Aligned_cols=208 Identities=20% Similarity=0.260 Sum_probs=161.5
Q ss_pred eeeccCcceeEEEEcC-CCCeEEEEeCCCeEEEEEccCCe-------eeEEeccccccCeEEEEEecC-CCEEEEEeCCC
Q 010362 258 TFMMHDETVLCIEFSR-DSEMLASGSQDGKIKVWRIRSGQ-------CLRRLERAHSEGVTSLVFSRD-GSQILSTSFDS 328 (512)
Q Consensus 258 ~~~~h~~~v~~l~~s~-~~~~l~s~~~dg~i~vwd~~~~~-------~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg 328 (512)
.+.||+++|..++|+| +...||+||.|.+|.||++..+. .+..+. +|...|..+.|+|. .+.|++++.|.
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~-gH~rrVg~V~wHPtA~NVLlsag~Dn 154 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELY-GHQRRVGLVQWHPTAPNVLLSAGSDN 154 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEe-ecceeEEEEeecccchhhHhhccCCc
Confidence 4668999999999999 66789999999999999997553 345555 89999999999995 46788999999
Q ss_pred cEEEEeCCCCceeEEeeCCccceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeecCCCCCCCCCCceeEEEEEcCCC
Q 010362 329 TARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKN 408 (512)
Q Consensus 329 ~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 408 (512)
+|.+||+.+++.+.++. |...|.++.|+.+|.++++++.|..|+|||.++++.+..-..+. ......+.|..++
T Consensus 155 ~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~he-----G~k~~Raifl~~g 228 (472)
T KOG0303|consen 155 TVSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHE-----GAKPARAIFLASG 228 (472)
T ss_pred eEEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeeccccc-----CCCcceeEEeccC
Confidence 99999999999998888 99999999999999999999999999999999999887753221 1223344455555
Q ss_pred CCeEEEEc---CCCcEEEEecCCeEE-EEeeCCcccCCcEEEEEECCCCCEEEEEe-CCCeEEEEEcCCCe
Q 010362 409 PDHIVVCN---KTSSIYIMTLQGQVV-KSFSSGKREGGDFVAACVSPKGEWIYCVG-EDRNLYCFSHQSGK 474 (512)
Q Consensus 409 ~~~l~~~~---~~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~s~~g~~l~~g~-~dg~i~iwd~~~~~ 474 (512)
.++.+|. .+..+-+||...-.. ..+.... ....+.--.+.+|...++.++ .|+.|+-|.+.+..
T Consensus 229 -~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elD-tSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~ 297 (472)
T KOG0303|consen 229 -KIFTTGFSRMSERQIALWDPNNLEEPIALQELD-TSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEP 297 (472)
T ss_pred -ceeeeccccccccceeccCcccccCcceeEEec-cCCceEEeeecCCCCEEEEEecCCcceEEEEecCCC
Confidence 4444443 456789999873211 1111111 234467777899999887666 89999999998765
No 178
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=8.3e-20 Score=165.50 Aligned_cols=160 Identities=21% Similarity=0.352 Sum_probs=129.2
Q ss_pred cCcCceEEEEECCCCCEEEEEeCCCeEEEEEcCCCeeeccccccccceeeccCcceeEEEEcC--CCCeEEEEeCCCeEE
Q 010362 211 GTKSHAECARFSPDGQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSR--DSEMLASGSQDGKIK 288 (512)
Q Consensus 211 ~h~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~--~~~~l~s~~~dg~i~ 288 (512)
||.+.|.|++|+.+|.+|++||.|-.+.|||....+....+. .||...|.++.|-| ++.++++|..|..|+
T Consensus 48 GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~-------TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~ 120 (758)
T KOG1310|consen 48 GHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSIS-------TGHTANIFSVKFVPYTNNRIVLSGAGDKLIK 120 (758)
T ss_pred cccceecceeecCCCCEEeecCCcceEEeecchhcceeeeee-------cccccceeEEeeeccCCCeEEEeccCcceEE
Confidence 999999999999999999999999999999988766665443 46999999999999 567899999999999
Q ss_pred EEEccCC----------eeeEEeccccccCeEEEEEecCC-CEEEEEeCCCcEEEEeCCCCceeE----------EeeCC
Q 010362 289 VWRIRSG----------QCLRRLERAHSEGVTSLVFSRDG-SQILSTSFDSTARIHGLKSGKLLK----------EFRGH 347 (512)
Q Consensus 289 vwd~~~~----------~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~v~i~d~~~~~~~~----------~~~~~ 347 (512)
++|+... .....+ ..|...|..++..|++ +.+.+++.||+++-+|++...... .+...
T Consensus 121 lfdl~~~~~~~~d~~~~~~~~~~-~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~ 199 (758)
T KOG1310|consen 121 LFDLDSSKEGGMDHGMEETTRCW-SCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQ 199 (758)
T ss_pred EEecccccccccccCccchhhhh-hhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchh
Confidence 9999752 122333 3788899999999988 788999999999999998632111 11122
Q ss_pred ccceeEEEEcCC-CCEEEEEeCCCcEEEEeCC
Q 010362 348 SSYVNDAIFTND-GSRVVTASSDCTVKVWDLK 378 (512)
Q Consensus 348 ~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~ 378 (512)
--...|+..+|. ..+|++|+.|-..++||.+
T Consensus 200 lielk~ltisp~rp~~laVGgsdpfarLYD~R 231 (758)
T KOG1310|consen 200 LIELKCLTISPSRPYYLAVGGSDPFARLYDRR 231 (758)
T ss_pred hheeeeeeecCCCCceEEecCCCchhhhhhhh
Confidence 234678889985 4578999999999999954
No 179
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.85 E-value=2e-19 Score=174.80 Aligned_cols=292 Identities=18% Similarity=0.258 Sum_probs=211.5
Q ss_pred cCcCceEEEEECCCCCEEEEEeCCCeEEEEEcCCCeeeccccccccceeeccCcceeEEEEcC--CCCeEEEEeCCCeEE
Q 010362 211 GTKSHAECARFSPDGQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSR--DSEMLASGSQDGKIK 288 (512)
Q Consensus 211 ~h~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~--~~~~l~s~~~dg~i~ 288 (512)
+.......+.|+|-...++++...-.|+|||.+.++....+.... .....|+.+.+-. |..++++|+.||.|+
T Consensus 1062 ~n~~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~-----~~~t~Vs~l~liNe~D~aLlLtas~dGvIR 1136 (1387)
T KOG1517|consen 1062 GNNQPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGA-----FPDTRVSDLELINEQDDALLLTASSDGVIR 1136 (1387)
T ss_pred cCCCCCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCC-----CCCCccceeeeecccchhheeeeccCceEE
Confidence 444456778899988899999878899999999998876654322 2456789998876 556899999999999
Q ss_pred EEEcc-CC----eeeEEec------cccccCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeeC-CccceeEEEE
Q 010362 289 VWRIR-SG----QCLRRLE------RAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRG-HSSYVNDAIF 356 (512)
Q Consensus 289 vwd~~-~~----~~~~~~~------~~~~~~i~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~-~~~~v~~~~~ 356 (512)
||+-- ++ +.+..+. .+..+.=.-+.|.....+|++++.-..|+|||.........+.. ....|+++.-
T Consensus 1137 Iwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~ 1216 (1387)
T KOG1517|consen 1137 IWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSA 1216 (1387)
T ss_pred EecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecc
Confidence 99642 21 2222221 11111124467777767777777788999999988777776654 3445777665
Q ss_pred cC-CCCEEEEEeCCCcEEEEeCCCCceeeecCCCCCCCCCCce--eEEEEEcCCCCCeEEEEcCCCcEEEEecCCeEEEE
Q 010362 357 TN-DGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDAS--VNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQVVKS 433 (512)
Q Consensus 357 ~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~--i~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~ 433 (512)
+- .|+.+++|..||.|++||.+....-.... ..+.|... |..+.+.+.+-..+++++.+|.|++||++......
T Consensus 1217 ~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~---~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~ 1293 (1387)
T KOG1517|consen 1217 DLVHGNIIAAGFADGSVRVYDRRMAPPDSLVC---VYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKET 1293 (1387)
T ss_pred cccCCceEEEeecCCceEEeecccCCccccce---eecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccc
Confidence 43 57899999999999999998754321111 11233333 99999999887789999999999999999743332
Q ss_pred eeCCc---ccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCeeEEeccc-------cCCCeEEEEEcCCCCeEEEEEC
Q 010362 434 FSSGK---REGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKV-------HEKDVIGVTHHPHRNLLATYGE 503 (512)
Q Consensus 434 ~~~~~---~~~~~~~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~-------h~~~v~~v~~~p~~~~l~s~~~ 503 (512)
+.... ..++..+++.++++...+++|+. +.|.||++. |+.+..++. ..+.+.|++|||..-++|.|+.
T Consensus 1294 ~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~-G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~ 1371 (1387)
T KOG1517|consen 1294 FLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLS-GEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSA 1371 (1387)
T ss_pred cceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecC-hhhhcccccCcccccCcCCCcceeeecchhHhhhhccC
Confidence 22221 12345899999999999999998 999999976 443333332 2356899999999999999999
Q ss_pred CCeEEEecC
Q 010362 504 DCTMKLWKP 512 (512)
Q Consensus 504 dg~i~iW~~ 512 (512)
|.+|.||.+
T Consensus 1372 Ds~V~iYs~ 1380 (1387)
T KOG1517|consen 1372 DSTVSIYSC 1380 (1387)
T ss_pred CceEEEeec
Confidence 999999853
No 180
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.85 E-value=1.6e-18 Score=145.15 Aligned_cols=283 Identities=16% Similarity=0.232 Sum_probs=204.2
Q ss_pred ecCcCceEEEEECC---CCCEEEEEe----CCCeEEEEEcC--CCeeeccccccccceeeccCcceeEEEEcCCC-----
Q 010362 210 FGTKSHAECARFSP---DGQFLVSCS----FDGFIEVWDYL--SGKLKKDLQYQADETFMMHDETVLCIEFSRDS----- 275 (512)
Q Consensus 210 ~~h~~~v~~~~~s~---~~~~l~sg~----~dg~i~iwd~~--~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~----- 275 (512)
+...-.+.++.||. .+.+||.|+ ..+.|.|-.+. +++....-. ..|..+++.+-|.|+.
T Consensus 41 Y~ap~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~-------fd~~YP~tK~~wiPd~~g~~p 113 (364)
T KOG0290|consen 41 YNAPWPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDAN-------FDHPYPVTKLMWIPDSKGVYP 113 (364)
T ss_pred ecCCCceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCC-------CCCCCCccceEecCCccccCc
Confidence 34455678888884 345788887 35666666543 444443322 2389999999999976
Q ss_pred CeEEEEeCCCeEEEEEccCCe--ee--EE----eccccccCeEEEEEec-CCCEEEEEeCCCcEEEEeCCCCce---eEE
Q 010362 276 EMLASGSQDGKIKVWRIRSGQ--CL--RR----LERAHSEGVTSLVFSR-DGSQILSTSFDSTARIHGLKSGKL---LKE 343 (512)
Q Consensus 276 ~~l~s~~~dg~i~vwd~~~~~--~~--~~----~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~v~i~d~~~~~~---~~~ 343 (512)
++||+++ ..+|+|.+...+ .. .. ....+..+++++.|+. +.++|.+++-|-+..+||++++.. ...
T Consensus 114 dlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQ 191 (364)
T KOG0290|consen 114 DLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQ 191 (364)
T ss_pred chhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeE
Confidence 3566654 479999987422 11 01 1124567899999997 678899999999999999998733 556
Q ss_pred eeCCccceeEEEEcCCC-CEEEEEeCCCcEEEEeCCCCceeeecCCCCCCCCCCceeEEEEEcCCCCCeEEEEcCC-CcE
Q 010362 344 FRGHSSYVNDAIFTNDG-SRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKT-SSI 421 (512)
Q Consensus 344 ~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~-~~i 421 (512)
+-.|...|.+++|..++ +.+++.+.||.+|+||+|..+....+.... ....+...++|++.+++++++-..| ..|
T Consensus 192 LIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p---~~~~pLlRLswnkqDpnymATf~~dS~~V 268 (364)
T KOG0290|consen 192 LIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDP---SPSTPLLRLSWNKQDPNYMATFAMDSNKV 268 (364)
T ss_pred EEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCC---CCCCcceeeccCcCCchHHhhhhcCCceE
Confidence 77899999999999854 478999999999999999876444333222 1256788899999998988887655 568
Q ss_pred EEEecC--CeEEEEeeCCcccCCcEEEEEECCC-CCEEEEEeCCCeEEEEEcCCCe------eEEeccccCCCeEEEEEc
Q 010362 422 YIMTLQ--GQVVKSFSSGKREGGDFVAACVSPK-GEWIYCVGEDRNLYCFSHQSGK------LEHLMKVHEKDVIGVTHH 492 (512)
Q Consensus 422 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~s~~-g~~l~~g~~dg~i~iwd~~~~~------~~~~~~~h~~~v~~v~~~ 492 (512)
.+.|++ ...+..+. .|.+.|..++|.|. ...|++++.|..+.+||+...- ++..+. -.+.|+.+.|+
T Consensus 269 ~iLDiR~P~tpva~L~---~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~-a~~EVNqi~Ws 344 (364)
T KOG0290|consen 269 VILDIRVPCTPVARLR---NHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYT-AGGEVNQIQWS 344 (364)
T ss_pred EEEEecCCCcceehhh---cCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhh-ccceeeeeeec
Confidence 999998 34444444 35678999999985 6689999999999999997532 233333 46789999999
Q ss_pred C-CCCeEEEEECCCeEEE
Q 010362 493 P-HRNLLATYGEDCTMKL 509 (512)
Q Consensus 493 p-~~~~l~s~~~dg~i~i 509 (512)
| .+..++.+.. +.+.|
T Consensus 345 ~~~~Dwiai~~~-kklei 361 (364)
T KOG0290|consen 345 SSQPDWIAICFG-KKLEI 361 (364)
T ss_pred ccCCCEEEEEec-CeeeE
Confidence 8 5667776654 44443
No 181
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.85 E-value=1.5e-19 Score=166.79 Aligned_cols=249 Identities=18% Similarity=0.280 Sum_probs=177.8
Q ss_pred ecCcCceEEEEECCCCCEEEEEeCCCeEEEEEcCCCeeeccccccccceeeccCcceeEEEEcCC-CCeEEEEeCCCeEE
Q 010362 210 FGTKSHAECARFSPDGQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRD-SEMLASGSQDGKIK 288 (512)
Q Consensus 210 ~~h~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~-~~~l~s~~~dg~i~ 288 (512)
..|...|..+.|-|....|++++.|.++++||++++++...- .+.||...|.+++|.|. ...|++|+.||.|.
T Consensus 97 ~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~------~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~il 170 (720)
T KOG0321|consen 97 LAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGR------LNLGHTGSVKSECFMPTNPAVFCTGGRDGEIL 170 (720)
T ss_pred ccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecce------eecccccccchhhhccCCCcceeeccCCCcEE
Confidence 489999999999997778999999999999999988866531 36679999999999995 46789999999999
Q ss_pred EEEccCCee---------------------------eEEeccccccCeEE---EEEecCCCEEEEEeC-CCcEEEEeCCC
Q 010362 289 VWRIRSGQC---------------------------LRRLERAHSEGVTS---LVFSRDGSQILSTSF-DSTARIHGLKS 337 (512)
Q Consensus 289 vwd~~~~~~---------------------------~~~~~~~~~~~i~~---~~~~~~~~~l~~~~~-dg~v~i~d~~~ 337 (512)
|||++-... +... ..+...|.+ +.+..|...||+++. |+.|++||++.
T Consensus 171 lWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~-kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk 249 (720)
T KOG0321|consen 171 LWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKW-KAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRK 249 (720)
T ss_pred EEEEeccchhhHHHHhhhhhccccCCCCCCchhhcccccc-ccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecc
Confidence 999863220 0000 123344555 556668889998887 99999999986
Q ss_pred CceeE--------EeeCC---ccceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeecCCCCCCCCCC--ceeEEEEE
Q 010362 338 GKLLK--------EFRGH---SSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGD--ASVNSVHL 404 (512)
Q Consensus 338 ~~~~~--------~~~~~---~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~--~~i~~~~~ 404 (512)
..... .+..| .-.+.++.....|.+|++.+.|+.|++||+.+....-... ..++. .-...-..
T Consensus 250 ~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~----~sg~~~~sf~vks~l 325 (720)
T KOG0321|consen 250 NYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAE----FSGKLNSSFYVKSEL 325 (720)
T ss_pred cccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhh----ccCcccceeeeeeec
Confidence 54332 12223 2357788888889999999999999999998643211111 01111 11122235
Q ss_pred cCCCCCeEEEEcCCCcEEEEecCCeEE--EEeeCCcccCCcEEEEEECCC-CCEEEEEeCCCeEEEEEcCCC
Q 010362 405 FPKNPDHIVVCNKTSSIYIMTLQGQVV--KSFSSGKREGGDFVAACVSPK-GEWIYCVGEDRNLYCFSHQSG 473 (512)
Q Consensus 405 ~~~~~~~l~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~~~~~~~~~s~~-g~~l~~g~~dg~i~iwd~~~~ 473 (512)
+|++ ..+++++.+...++|.+..-.. ..+.. +...+++++|.|. -.-++++++|..+.+|++.++
T Consensus 326 Spd~-~~l~SgSsd~~ayiw~vs~~e~~~~~l~G---ht~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~ 393 (720)
T KOG0321|consen 326 SPDD-CSLLSGSSDEQAYIWVVSSPEAPPALLLG---HTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNG 393 (720)
T ss_pred CCCC-ceEeccCCCcceeeeeecCccCChhhhhC---cceEEEEEeeccccCCCceeeccCcceEEEeccCc
Confidence 6666 8999999999999999984322 22222 3456888999653 233566699999999999754
No 182
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.85 E-value=6.7e-19 Score=173.89 Aligned_cols=295 Identities=16% Similarity=0.218 Sum_probs=206.1
Q ss_pred cCcCceEEEEECCC-CCEEEEEeCCCeEEEEEcCCCeeeccccccccceeeccCcceeEEEEcCCCCeEEEEeCCCeEEE
Q 010362 211 GTKSHAECARFSPD-GQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQDGKIKV 289 (512)
Q Consensus 211 ~h~~~v~~~~~s~~-~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~v 289 (512)
.|+..|..++.++. +.++++||.||+|++||...-.... .......++.-...++.++...+.++.+|.++.||.|++
T Consensus 1046 Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~-~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v~~ 1124 (1431)
T KOG1240|consen 1046 EHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEG-GSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSVRV 1124 (1431)
T ss_pred hccccccceeecCCCCceEEEecCCceEEEeeehhhhcCc-ceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCCeEEE
Confidence 78888888888765 4999999999999999986432221 112223344446788999999999999999999999999
Q ss_pred EEccCC-------eeeEEeccccccCeEEE-EEec-CCC-EEEEEeCCCcEEEEeCCCCceeEEeeC--CccceeEEEEc
Q 010362 290 WRIRSG-------QCLRRLERAHSEGVTSL-VFSR-DGS-QILSTSFDSTARIHGLKSGKLLKEFRG--HSSYVNDAIFT 357 (512)
Q Consensus 290 wd~~~~-------~~~~~~~~~~~~~i~~~-~~~~-~~~-~l~~~~~dg~v~i~d~~~~~~~~~~~~--~~~~v~~~~~~ 357 (512)
.+++.. .+.+.......+.+.++ +|.. .+. .++.+...+.|..||+++.....+++. ..+.|++++.+
T Consensus 1125 ~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~id 1204 (1431)
T KOG1240|consen 1125 LRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVID 1204 (1431)
T ss_pred EEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEEEec
Confidence 998762 11222221222333333 3332 334 788888899999999988766655543 35679999999
Q ss_pred CCCCEEEEEeCCCcEEEEeCCCCceeeecCCCCCCCCCCceeEEEEEcCCCC--CeEEEEc--CCCcEEEEecCCeEEEE
Q 010362 358 NDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNP--DHIVVCN--KTSSIYIMTLQGQVVKS 433 (512)
Q Consensus 358 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~~l~~~~--~~~~i~~~~~~~~~~~~ 433 (512)
|.++++++|+..|.+.+||+|-+..+..+..+. ..++..+..+|..+ ...++++ ..+.+.+|++.++....
T Consensus 1205 p~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~-----~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~ 1279 (1431)
T KOG1240|consen 1205 PWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPA-----RAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQT 1279 (1431)
T ss_pred CCceEEEEecCCceEEEEEeecCceeecccCcc-----cCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcceE
Confidence 999999999999999999999998888877553 46788888777654 4444444 57789999998443222
Q ss_pred -eeCC-c---------------ccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCeeE--------------------
Q 010362 434 -FSSG-K---------------REGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLE-------------------- 476 (512)
Q Consensus 434 -~~~~-~---------------~~~~~~~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~-------------------- 476 (512)
+... . .........++...+.++.+|+.|+.|+.||....+..
T Consensus 1280 vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~ss~~~~~~s~~~~~~~~s~~~ 1359 (1431)
T KOG1240|consen 1280 VLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEISSYAVPGPSTSYSTNSESYDL 1359 (1431)
T ss_pred EEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCcccccccccCccccccccchhccc
Confidence 2111 0 11112223444445678999999999999997532211
Q ss_pred ---------E-------------------e--------ccccCCCeEEEEEcC-CCCeEEEEECCCeEEEec
Q 010362 477 ---------H-------------------L--------MKVHEKDVIGVTHHP-HRNLLATYGEDCTMKLWK 511 (512)
Q Consensus 477 ---------~-------------------~--------~~~h~~~v~~v~~~p-~~~~l~s~~~dg~i~iW~ 511 (512)
. . -..|..+|+++++.. +..++++++.||.|+||+
T Consensus 1360 ~~i~~~~~i~e~i~~~~tv~~t~~~~~~~~~~~~~~~ps~~H~d~Itdma~~~~~q~llvs~s~dG~IkiWk 1431 (1431)
T KOG1240|consen 1360 STIPGSQFIDEFIIYQQTVGLTEALRENQKLRPGPSDPSTYHHDPITDMATLKSEQPLLVSSSRDGVIKIWK 1431 (1431)
T ss_pred cccCCCccchhhhhhhhhcCchhhcccccccccCCCCCcccccchhhhhhhhccCccEEEEecCCCeeeecC
Confidence 0 0 013667788888776 346999999999999996
No 183
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.84 E-value=1.7e-18 Score=165.76 Aligned_cols=267 Identities=21% Similarity=0.259 Sum_probs=193.8
Q ss_pred CCeEEEEEcCCCeeeccccccccceeeccCcceeEEEEcC-CCCeEEEEeCCCeEEEEEccCCee-----eEEecccccc
Q 010362 234 DGFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSR-DSEMLASGSQDGKIKVWRIRSGQC-----LRRLERAHSE 307 (512)
Q Consensus 234 dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~-~~~~l~s~~~dg~i~vwd~~~~~~-----~~~~~~~~~~ 307 (512)
++.+.||++.... ...+ .+ .-...|+|++|+| +..+++.|+.+|.|.+||++.+.. +......|..
T Consensus 221 ~~~~~vW~~~~p~-~Pe~------~~-~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~ 292 (555)
T KOG1587|consen 221 DGVLLVWSLKNPN-TPEL------VL-ESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSE 292 (555)
T ss_pred CceEEEEecCCCC-CceE------EE-ecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCc
Confidence 3579999987762 1111 11 1567899999999 567888888999999999987654 2333457899
Q ss_pred CeEEEEEecCCC--EEEEEeCCCcEEEEeCCCCce-e-----EEee------CCccceeEEEEcC-CCCEEEEEeCCCcE
Q 010362 308 GVTSLVFSRDGS--QILSTSFDSTARIHGLKSGKL-L-----KEFR------GHSSYVNDAIFTN-DGSRVVTASSDCTV 372 (512)
Q Consensus 308 ~i~~~~~~~~~~--~l~~~~~dg~v~i~d~~~~~~-~-----~~~~------~~~~~v~~~~~~~-~~~~l~~~~~dg~i 372 (512)
+++.+.|..+.. -|++++.||.|..|+++.-.. . .... .....+++++|.+ +...++.|+.+|.|
T Consensus 293 ~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v 372 (555)
T KOG1587|consen 293 PVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKV 372 (555)
T ss_pred CeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEE
Confidence 999999987544 499999999999998864322 1 1111 1223588899987 45678999999988
Q ss_pred EEEeCCCCcee--eecCCCCCCCCCCceeEEEEEcCCCCCeEEEEcCCCcEEEEecCC--eEEEEeeCCcccCCcEEEEE
Q 010362 373 KVWDLKSTDCL--QTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQG--QVVKSFSSGKREGGDFVAAC 448 (512)
Q Consensus 373 ~iwd~~~~~~~--~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 448 (512)
.--+-...+.. ..++.......|.++|+++.++|.....+.+++ |..+++|.... .++..+.. ....+++++
T Consensus 373 ~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~~~Pl~~~~~---~~~~v~~va 448 (555)
T KOG1587|consen 373 YKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVIASPLLSLDS---SPDYVTDVA 448 (555)
T ss_pred EEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeec-cceeEeccccCCCCcchhhhh---ccceeeeeE
Confidence 76333322211 233444456678999999999999977777777 99999998772 22222222 234489999
Q ss_pred ECCCCC-EEEEEeCCCeEEEEEcCCC--eeEEeccccCCCeEEEEEcCCCCeEEEEECCCeEEEecC
Q 010362 449 VSPKGE-WIYCVGEDRNLYCFSHQSG--KLEHLMKVHEKDVIGVTHHPHRNLLATYGEDCTMKLWKP 512 (512)
Q Consensus 449 ~s~~g~-~l~~g~~dg~i~iwd~~~~--~~~~~~~~h~~~v~~v~~~p~~~~l~s~~~dg~i~iW~~ 512 (512)
|||-.. .++++..||.+.+||+... .++...+.+....+.+.|++.|+.|+.|+..|++.+|+.
T Consensus 449 WSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l 515 (555)
T KOG1587|consen 449 WSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKL 515 (555)
T ss_pred EcCcCceEEEEEcCCCceehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEEc
Confidence 999765 5566668999999998653 455555556667788999999999999999999999873
No 184
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.83 E-value=2.6e-19 Score=149.67 Aligned_cols=221 Identities=17% Similarity=0.244 Sum_probs=172.9
Q ss_pred cccceEEEecCcCceEEEEECCCCCEEEEEeCCCeEEEEEcCCCee-eccccccccceeeccCcceeEEEEcC--CCCeE
Q 010362 202 TTLSHTIKFGTKSHAECARFSPDGQFLVSCSFDGFIEVWDYLSGKL-KKDLQYQADETFMMHDETVLCIEFSR--DSEML 278 (512)
Q Consensus 202 ~~~~~~~~~~h~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~-~~~~~~~~~~~~~~h~~~v~~l~~s~--~~~~l 278 (512)
-++...+...+-+.|.|+.|.|++..+|+-. |..|.+|+++.+.. ...+.... -.+|....++-+|+| +++.+
T Consensus 112 lE~v~~Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~---s~e~~~~ftsg~WspHHdgnqv 187 (370)
T KOG1007|consen 112 LECVASLDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSE---SAEMRHSFTSGAWSPHHDGNQV 187 (370)
T ss_pred hhHhhcCCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccc---cccccceecccccCCCCccceE
Confidence 3444455556667999999999999999877 89999999988765 33332211 112667788899999 78888
Q ss_pred EEEeCCCeEEEEEccCCeeeEEeccccccCeEEEEEecCC-CEEEEEeCCCcEEEEeCCCC-ceeEEeeCCccceeEEEE
Q 010362 279 ASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDG-SQILSTSFDSTARIHGLKSG-KLLKEFRGHSSYVNDAIF 356 (512)
Q Consensus 279 ~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~v~i~d~~~~-~~~~~~~~~~~~v~~~~~ 356 (512)
++.+ |++++.||+++..+...+...|...|..+.|+|+- .+|++|+.||.|++||.+.. .++.++.+|...|.++.|
T Consensus 188 ~tt~-d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRf 266 (370)
T KOG1007|consen 188 ATTS-DSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRF 266 (370)
T ss_pred EEeC-CCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEe
Confidence 8775 89999999999999999988999999999999975 46788999999999999865 568899999999999999
Q ss_pred cCC-CCEEEEEeCCCcEEEEeCCCCceeeecC-------------------C----CCCCCCCCceeEEEEEcCCCCCeE
Q 010362 357 TND-GSRVVTASSDCTVKVWDLKSTDCLQTFK-------------------P----PPPLRGGDASVNSVHLFPKNPDHI 412 (512)
Q Consensus 357 ~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~-------------------~----~~~~~~~~~~i~~~~~~~~~~~~l 412 (512)
+|. ..++++|+.|..|.+|...+-.....+. . ......|..+|++++|+..++-++
T Consensus 267 n~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiF 346 (370)
T KOG1007|consen 267 NPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIF 346 (370)
T ss_pred cCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeE
Confidence 994 4577899999999999764322111100 0 012345788999999999999999
Q ss_pred EEEcCCCcEEEEecC
Q 010362 413 VVCNKTSSIYIMTLQ 427 (512)
Q Consensus 413 ~~~~~~~~i~~~~~~ 427 (512)
++-+.||++.+-.+.
T Consensus 347 ASLSYDGRviIs~V~ 361 (370)
T KOG1007|consen 347 ASLSYDGRVIISSVP 361 (370)
T ss_pred EEeccCceEEeecCC
Confidence 999999998876554
No 185
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.82 E-value=3.9e-18 Score=150.41 Aligned_cols=196 Identities=19% Similarity=0.241 Sum_probs=150.4
Q ss_pred EEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeeCCccceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeecCCC
Q 010362 310 TSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPP 389 (512)
Q Consensus 310 ~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 389 (512)
..++|+++|..+++|+.||++++|+..+...+.....|...|.++.|+|||+.|++.+.| ..+||+.+++..+....+.
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~ 226 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPF 226 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCc
Confidence 689999999999999999999999988888888888899999999999999999999999 8999999999766655432
Q ss_pred CCCCCCCceeEEEEEcCCC--CCe-EE-EEcCCCcEEEEecC---CeEEEEeeCCcccCCcEEEEEECCCCCEEEEEeCC
Q 010362 390 PPLRGGDASVNSVHLFPKN--PDH-IV-VCNKTSSIYIMTLQ---GQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGED 462 (512)
Q Consensus 390 ~~~~~~~~~i~~~~~~~~~--~~~-l~-~~~~~~~i~~~~~~---~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d 462 (512)
..+.....+.|..++ +.+ ++ .....+.+..+++. +...-...........++++++|+||++++.|+.|
T Consensus 227 ----~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~d 302 (398)
T KOG0771|consen 227 ----SKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMD 302 (398)
T ss_pred ----ccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccC
Confidence 233344555555443 122 22 22334556666654 11111111111123468999999999999999999
Q ss_pred CeEEEEEcCCCeeEEec-cccCCCeEEEEEcCCCCeEEEEECCCeEEEe
Q 010362 463 RNLYCFSHQSGKLEHLM-KVHEKDVIGVTHHPHRNLLATYGEDCTMKLW 510 (512)
Q Consensus 463 g~i~iwd~~~~~~~~~~-~~h~~~v~~v~~~p~~~~l~s~~~dg~i~iW 510 (512)
|.|.|++..+-+.++.. +.|...|+.+.|+|+.+++++.+.|..+.+-
T Consensus 303 GsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~ 351 (398)
T KOG0771|consen 303 GSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVT 351 (398)
T ss_pred CcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEE
Confidence 99999999988877655 4799999999999999999999988887664
No 186
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.82 E-value=5.1e-20 Score=174.62 Aligned_cols=284 Identities=18% Similarity=0.281 Sum_probs=214.0
Q ss_pred ccCccccceEEE-----ecCcCceEEEEECCCCCEEEEEeCCCeEEEEEcCCCeeeccccccccceeeccCcceeEEEEc
Q 010362 198 DMYPTTLSHTIK-----FGTKSHAECARFSPDGQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFS 272 (512)
Q Consensus 198 ~~~~~~~~~~~~-----~~h~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 272 (512)
-.+|....+.++ .||...|.|+.|...|.++++|+.|..|+||..+++.+... ..||.+.|+.++.+
T Consensus 170 ~akPgtmvqkmk~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs--------~rGhs~ditdlavs 241 (1113)
T KOG0644|consen 170 IAKPGTMVQKMKNIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLAS--------CRGHSGDITDLAVS 241 (1113)
T ss_pred ecCcHHHHHHHHHHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhcc--------CCCCccccchhccc
Confidence 345555555443 39999999999999999999999999999999988877664 45699999999999
Q ss_pred CCCCeEEEEeCCCeEEEEEccCCeeeEEeccccccCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEe----e-CC
Q 010362 273 RDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEF----R-GH 347 (512)
Q Consensus 273 ~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~----~-~~ 347 (512)
.++.+++++|.|..|++|.+.++.++..+. +|++.|++++|+|-. +.+.||++++||.+ ..+.... + ..
T Consensus 242 ~~n~~iaaaS~D~vIrvWrl~~~~pvsvLr-ghtgavtaiafsP~~----sss~dgt~~~wd~r-~~~~~y~prp~~~~~ 315 (1113)
T KOG0644|consen 242 SNNTMIAAASNDKVIRVWRLPDGAPVSVLR-GHTGAVTAIAFSPRA----SSSDDGTCRIWDAR-LEPRIYVPRPLKFTE 315 (1113)
T ss_pred hhhhhhhhcccCceEEEEecCCCchHHHHh-ccccceeeeccCccc----cCCCCCceEecccc-ccccccCCCCCCccc
Confidence 999999999999999999999999998887 999999999999954 67889999999987 2221111 1 12
Q ss_pred ccceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeecCCCCCCCCCCceeEEEEEcCCCCCeEEEEcCCCcEEEEecC
Q 010362 348 SSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQ 427 (512)
Q Consensus 348 ~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~~~~~ 427 (512)
...+.++.|...+..++|++.|+.-..|.+..... +...+.-+..+.+...+.+++-.+-.+.+|++.
T Consensus 316 ~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~------------~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~ 383 (1113)
T KOG0644|consen 316 KDLVDSILFENNGDRFLTGSRDGEARNHEFEQLAW------------RSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLY 383 (1113)
T ss_pred ccceeeeeccccccccccccCCcccccchhhHhhh------------hccceEEEeccccccccceeeeeeeEeeeeecc
Confidence 34577788888888999999999888887653221 111111222222333566667777788889887
Q ss_pred Ce-EEEEeeCCcccCCcEEEEEECCCCCE-EEEEeCCCeEEEEEcCCCeeEEeccccCCCeEEEEEcCCCCeEEEEECCC
Q 010362 428 GQ-VVKSFSSGKREGGDFVAACVSPKGEW-IYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPHRNLLATYGEDC 505 (512)
Q Consensus 428 ~~-~~~~~~~~~~~~~~~~~~~~s~~g~~-l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~~~dg 505 (512)
.. ....... +...+..+.++|-... ..+++.||...|||+-.|.+++.+.-..+.+..-+|+++|..++...+-|
T Consensus 384 ~g~l~H~l~g---hsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~gh~kl~d~kFSqdgts~~lsd~hg 460 (1113)
T KOG0644|consen 384 TGQLLHNLMG---HSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIGHGKLVDGKFSQDGTSIALSDDHG 460 (1113)
T ss_pred cchhhhhhcc---cccceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeecccceeeccccCCCCceEecCCCCC
Confidence 43 3333322 2345778888886554 46788999999999999988877654456677779999998888777777
Q ss_pred eEEEe
Q 010362 506 TMKLW 510 (512)
Q Consensus 506 ~i~iW 510 (512)
.+.|.
T Consensus 461 ql~i~ 465 (1113)
T KOG0644|consen 461 QLYIL 465 (1113)
T ss_pred ceEEe
Confidence 77764
No 187
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.82 E-value=1e-18 Score=152.92 Aligned_cols=258 Identities=21% Similarity=0.298 Sum_probs=179.0
Q ss_pred ecCcCceEEEEECCCCCEEEEEeCCCeEEEEEcCCCee--------eccccccccceeeccCcceeEEEEcCCCCeEEEE
Q 010362 210 FGTKSHAECARFSPDGQFLVSCSFDGFIEVWDYLSGKL--------KKDLQYQADETFMMHDETVLCIEFSRDSEMLASG 281 (512)
Q Consensus 210 ~~h~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~--------~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~ 281 (512)
.+|...|+++.|+|+|+.||+|+.+|.|.+|....-.. ...-.+.....+.+|...|..++|+|++.+++++
T Consensus 62 s~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~ 141 (434)
T KOG1009|consen 62 SRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSG 141 (434)
T ss_pred cCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeee
Confidence 48999999999999999999999999999997652100 0011123345677899999999999999999999
Q ss_pred eCCCeEEEEEccCCeeeEEeccccccCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEee----------------
Q 010362 282 SQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFR---------------- 345 (512)
Q Consensus 282 ~~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~---------------- 345 (512)
+.|.++++||+..|.....+. .|...+..++|.|-++++++-+.|...+.+.+...+.+....
T Consensus 142 s~dns~~l~Dv~~G~l~~~~~-dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s 220 (434)
T KOG1009|consen 142 SVDNSVRLWDVHAGQLLAILD-DHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKS 220 (434)
T ss_pred eccceEEEEEeccceeEeecc-ccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcce
Confidence 999999999999999988886 899999999999999999999888877766654333222111
Q ss_pred ---CC----ccceeEEEEcCCCCEEEEEeC----CCcE-----EEEeCCCCceeeecCCCCCCCCCCceeEEEEEcCC--
Q 010362 346 ---GH----SSYVNDAIFTNDGSRVVTASS----DCTV-----KVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPK-- 407 (512)
Q Consensus 346 ---~~----~~~v~~~~~~~~~~~l~~~~~----dg~i-----~iwd~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-- 407 (512)
-| ......++|+|+|..+++.+. ++.+ ++|+-...+ .+...+.+...+...+.++|-
T Consensus 221 ~rLfhDeTlksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~-----rP~~~lp~~~k~~lavr~~pVy~ 295 (434)
T KOG1009|consen 221 TRLFHDETLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLK-----RPAARLPSPKKPALAVRFSPVYY 295 (434)
T ss_pred eeeeecCchhhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeecccccc-----CceeecCCCCcceEEEEeeeeEE
Confidence 01 122456779999999887542 2222 334322111 111112233344444444432
Q ss_pred -----C---------CCeEEEEcCCCcEEEEecCC-eEEEEeeCCcccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCC
Q 010362 408 -----N---------PDHIVVCNKTSSIYIMTLQG-QVVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQS 472 (512)
Q Consensus 408 -----~---------~~~l~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~dg~i~iwd~~~ 472 (512)
. ..++++......+++||.+. .+...... .|-..++.++|++||.+++..+.||...+..+..
T Consensus 296 elrp~~~~~~~~~lpyrlvfaiAt~~svyvydtq~~~P~~~v~n--ihy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~ 373 (434)
T KOG1009|consen 296 ELRPLSSEKFLFVLPYRLVFAIATKNSVYVYDTQTLEPLAVVDN--IHYSAITDIAWSDDGSVLLVSSTDGFCSLVTFEP 373 (434)
T ss_pred EeccccccccccccccceEEEEeecceEEEeccccccceEEEee--eeeeeecceeecCCCcEEEEeccCCceEEEEEcc
Confidence 1 12344455567889999874 33333222 2456799999999999999999999877776665
Q ss_pred Cee
Q 010362 473 GKL 475 (512)
Q Consensus 473 ~~~ 475 (512)
.++
T Consensus 374 ~el 376 (434)
T KOG1009|consen 374 WEL 376 (434)
T ss_pred hhc
Confidence 443
No 188
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.82 E-value=4.8e-19 Score=151.61 Aligned_cols=274 Identities=20% Similarity=0.309 Sum_probs=191.3
Q ss_pred cccccccccCccccceEEEecCcCceEEEEECC--CCCEEEEEeCCCeEEEEEcCCCeeeccccccccceeeccC-ccee
Q 010362 191 AMKQDVEDMYPTTLSHTIKFGTKSHAECARFSP--DGQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHD-ETVL 267 (512)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~--~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~-~~v~ 267 (512)
.......+..+......++ ++...+..+.|.. .+..+.+|+.||+|++||++.......+.+. .+. .+..
T Consensus 49 ngsv~lyd~~tg~~l~~fk-~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~------~~~~~~f~ 121 (376)
T KOG1188|consen 49 NGSVRLYDKGTGQLLEEFK-GPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWT------QQSGTPFI 121 (376)
T ss_pred CCeEEEEeccchhhhheec-CCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheecc------CCCCCcce
Confidence 3344455555566666676 8888888999977 5678999999999999999887665555432 244 5778
Q ss_pred EEEEcCCCCeEEEEeC----CCeEEEEEccCCee-eEEeccccccCeEEEEEec-CCCEEEEEeCCCcEEEEeCCCCce-
Q 010362 268 CIEFSRDSEMLASGSQ----DGKIKVWRIRSGQC-LRRLERAHSEGVTSLVFSR-DGSQILSTSFDSTARIHGLKSGKL- 340 (512)
Q Consensus 268 ~l~~s~~~~~l~s~~~----dg~i~vwd~~~~~~-~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~v~i~d~~~~~~- 340 (512)
|++.+-.++.+++|+. +-.|.+||++..+. +..+...|...|+++.|+| +.++|++||.||.|.++|++....
T Consensus 122 ~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~Ee 201 (376)
T KOG1188|consen 122 CLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEE 201 (376)
T ss_pred EeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcch
Confidence 8888778888888753 67899999998776 7777778999999999999 568899999999999999965422
Q ss_pred --eEEeeCCccceeEEEEcCCC-CEEEEEeCCCcEEEEeCCCCceeeecCCCCCCCCC----CceeEEEE-EcCCCCCeE
Q 010362 341 --LKEFRGHSSYVNDAIFTNDG-SRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGG----DASVNSVH-LFPKNPDHI 412 (512)
Q Consensus 341 --~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~----~~~i~~~~-~~~~~~~~l 412 (512)
+...-.|.+.|.++.|..++ +.+.+-+..++..+|++..+.+...+..+...... ...-+-+. .+|.+....
T Consensus 202 DaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~~~~~~~~~ 281 (376)
T KOG1188|consen 202 DALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINEHSPGDKDTC 281 (376)
T ss_pred hhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeecccCCCcceE
Confidence 22222366779999998876 45888888999999999998865555443211110 01111111 235555666
Q ss_pred EEEcC-CCcEEEEecC----CeEEEEeeCCcc-cCCcEEEEEECCCCCEEEEEeCCCeEEEEEcC
Q 010362 413 VVCNK-TSSIYIMTLQ----GQVVKSFSSGKR-EGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQ 471 (512)
Q Consensus 413 ~~~~~-~~~i~~~~~~----~~~~~~~~~~~~-~~~~~~~~~~s~~g~~l~~g~~dg~i~iwd~~ 471 (512)
++++. .+...++-+. +........... +...+..+.|...+.++++|++||.+.+|...
T Consensus 282 ~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~~ 346 (376)
T KOG1188|consen 282 ALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWKVE 346 (376)
T ss_pred EEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEecC
Confidence 55554 5555554443 222222222111 23456678888899999999999999999853
No 189
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.82 E-value=1.2e-18 Score=151.73 Aligned_cols=252 Identities=16% Similarity=0.237 Sum_probs=194.9
Q ss_pred cceeeccCcceeEEEEcCCCCeEEEEeCCCeEEEEEcc------CCeeeEEeccccccCeEEEEEecCCCEEEEEeCCCc
Q 010362 256 DETFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWRIR------SGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDST 329 (512)
Q Consensus 256 ~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~vwd~~------~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~ 329 (512)
.+.+.+|.+.|.++.|+.++++|++|+.|..+++|+++ +.+++......|...|.|++|...+..+++|..+++
T Consensus 49 qKD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~ 128 (609)
T KOG4227|consen 49 QKDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGT 128 (609)
T ss_pred hhhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcce
Confidence 34566799999999999999999999999999999985 346666666677799999999999999999999999
Q ss_pred EEEEeCCCCceeEEeeCC--ccceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeecCCCCCCCCCCceeEEEEEcCC
Q 010362 330 ARIHGLKSGKLLKEFRGH--SSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPK 407 (512)
Q Consensus 330 v~i~d~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 407 (512)
|...|+++.+.+..+... .+.|..+..+|..+.|++.+.+|.|.+||.+..........+ ........++.|+|.
T Consensus 129 VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~---AN~~~~F~t~~F~P~ 205 (609)
T KOG4227|consen 129 VIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLP---ANSGKNFYTAEFHPE 205 (609)
T ss_pred eEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeee---cCCCccceeeeecCC
Confidence 999999999888877632 358999999999999999999999999999876522111111 123456788999999
Q ss_pred CCCeEEEEcCCCcEEEEecCCeEEEEee-----CCcccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCee-EEeccc
Q 010362 408 NPDHIVVCNKTSSIYIMTLQGQVVKSFS-----SGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKL-EHLMKV 481 (512)
Q Consensus 408 ~~~~l~~~~~~~~i~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~-~~~~~~ 481 (512)
.+.++++.+..+-+-+||.+......+. ..+..........|+|+|+.+++--....-..||+.+..+ +..+.
T Consensus 206 ~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D- 284 (609)
T KOG4227|consen 206 TPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSD- 284 (609)
T ss_pred CceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEecc-
Confidence 9999999999999999999844322221 1122234456789999999988877666666788776443 23322
Q ss_pred cC-------CCeEEEEEcCCCCeEEEEECCCeEEEecC
Q 010362 482 HE-------KDVIGVTHHPHRNLLATYGEDCTMKLWKP 512 (512)
Q Consensus 482 h~-------~~v~~v~~~p~~~~l~s~~~dg~i~iW~~ 512 (512)
|. ..+.+++|-.|.. +++|+++-.|.+|+.
T Consensus 285 ~N~~GY~N~~T~KS~~F~~D~~-v~tGSD~~~i~~Wkl 321 (609)
T KOG4227|consen 285 HNPNGYCNIKTIKSMTFIDDYT-VATGSDHWGIHIWKL 321 (609)
T ss_pred CCCCcceeeeeeeeeeeeccee-eeccCcccceEEEec
Confidence 22 2466788876554 899999999999973
No 190
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.82 E-value=7.1e-17 Score=151.53 Aligned_cols=249 Identities=16% Similarity=0.221 Sum_probs=163.4
Q ss_pred CcCceEEEEECCCCCEEEEEe-CCCeEEEEEcCC-CeeeccccccccceeeccCcceeEEEEcCCCCeEEEEeC-CCeEE
Q 010362 212 TKSHAECARFSPDGQFLVSCS-FDGFIEVWDYLS-GKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQ-DGKIK 288 (512)
Q Consensus 212 h~~~v~~~~~s~~~~~l~sg~-~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~-dg~i~ 288 (512)
+.+....++++|++++|++++ .++.|.+|+++. +.... .. ... .......++|+|+++++++++. ++.|.
T Consensus 33 ~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~-~~-----~~~-~~~~p~~i~~~~~g~~l~v~~~~~~~v~ 105 (330)
T PRK11028 33 VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTF-AA-----ESP-LPGSPTHISTDHQGRFLFSASYNANCVS 105 (330)
T ss_pred cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEE-ee-----eec-CCCCceEEEECCCCCEEEEEEcCCCeEE
Confidence 446678899999999987765 588999999863 33211 11 000 2235678999999998888765 78999
Q ss_pred EEEccC-Ce---eeEEeccccccCeEEEEEecCCCEEEEEe-CCCcEEEEeCCCCceeEE-----ee-CCccceeEEEEc
Q 010362 289 VWRIRS-GQ---CLRRLERAHSEGVTSLVFSRDGSQILSTS-FDSTARIHGLKSGKLLKE-----FR-GHSSYVNDAIFT 357 (512)
Q Consensus 289 vwd~~~-~~---~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~v~i~d~~~~~~~~~-----~~-~~~~~v~~~~~~ 357 (512)
+|++.+ +. .+..+ .+.....+++++|+++++++++ .++.|.+||+.+...+.. .. ........+.|+
T Consensus 106 v~~~~~~g~~~~~~~~~--~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~ 183 (330)
T PRK11028 106 VSPLDKDGIPVAPIQII--EGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFH 183 (330)
T ss_pred EEEECCCCCCCCceeec--cCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEEC
Confidence 999974 32 22222 2334567789999999886655 468999999976432211 11 122346789999
Q ss_pred CCCCEEEEEeC-CCcEEEEeCCC--Cc--eeeecCCCCCCCCCCceeEEEEEcCCCCCeEEEE-cCCCcEEEEecC--Ce
Q 010362 358 NDGSRVVTASS-DCTVKVWDLKS--TD--CLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVC-NKTSSIYIMTLQ--GQ 429 (512)
Q Consensus 358 ~~~~~l~~~~~-dg~i~iwd~~~--~~--~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~-~~~~~i~~~~~~--~~ 429 (512)
|+|++++++.. ++.|.+||+.. +. ....+...............+.++|++ .+++++ ..++.|.+|+++ +.
T Consensus 184 pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg-~~lyv~~~~~~~I~v~~i~~~~~ 262 (330)
T PRK11028 184 PNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDG-RHLYACDRTASLISVFSVSEDGS 262 (330)
T ss_pred CCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCC-CEEEEecCCCCeEEEEEEeCCCC
Confidence 99999988876 89999999973 22 233322111100112233468899988 555555 557899999985 22
Q ss_pred EEEEeeCCcccCCcEEEEEECCCCCEEEEEeC-CCeEEEEEcC
Q 010362 430 VVKSFSSGKREGGDFVAACVSPKGEWIYCVGE-DRNLYCFSHQ 471 (512)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~-dg~i~iwd~~ 471 (512)
......... .......+.++|+|++|++++. ++.|.+|++.
T Consensus 263 ~~~~~~~~~-~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 263 VLSFEGHQP-TETQPRGFNIDHSGKYLIAAGQKSHHISVYEID 304 (330)
T ss_pred eEEEeEEEe-ccccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence 222111111 1123457899999999998885 8899999874
No 191
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.81 E-value=1.9e-17 Score=140.78 Aligned_cols=210 Identities=14% Similarity=0.190 Sum_probs=163.9
Q ss_pred cCceEEEEECCCCCEEEEEeCCCeEEEEEcCCCeeeccccccccceeeccCcceeEEEEcCCCCeEEEEeCCCeEEEEEc
Q 010362 213 KSHAECARFSPDGQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWRI 292 (512)
Q Consensus 213 ~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~vwd~ 292 (512)
..+|+|.+|++|+..+|++.....|.||....... ....+++..|...|+++.|+|..+.|++|+.|..-++|..
T Consensus 10 ~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~-----w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~ 84 (361)
T KOG1523|consen 10 LEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADL-----WEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQ 84 (361)
T ss_pred cCceeeeeecCCCceEEeccCCceEEEEEecCCCC-----ceeceehhhhCcceeEEeecCCCCceeEccCCCCcccccc
Confidence 46799999999999999999999999998766542 2344567779999999999999999999999999999998
Q ss_pred -cCCee--eEEeccccccCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCcee----EEeeCCccceeEEEEcCCCCEEEE
Q 010362 293 -RSGQC--LRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLL----KEFRGHSSYVNDAIFTNDGSRVVT 365 (512)
Q Consensus 293 -~~~~~--~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~----~~~~~~~~~v~~~~~~~~~~~l~~ 365 (512)
..++- ...+. .++..++++.|+|.++.|++|+.-..|.+|-.+...-- ..-+.+.+.|+++.|+|++-++++
T Consensus 85 ~~~~~WkptlvLl-RiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaa 163 (361)
T KOG1523|consen 85 PSGGTWKPTLVLL-RINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAA 163 (361)
T ss_pred CCCCeeccceeEE-EeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecc
Confidence 44432 22333 57889999999999999999999999999987654322 122346678999999999999999
Q ss_pred EeCCCcEEEEeCCCCceeeecCCCC-------------CCCCCCceeEEEEEcCCCCCeEEEEcCCCcEEEEecCCeE
Q 010362 366 ASSDCTVKVWDLKSTDCLQTFKPPP-------------PLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQV 430 (512)
Q Consensus 366 ~~~dg~i~iwd~~~~~~~~~~~~~~-------------~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~ 430 (512)
|+.|+..++|..--... ..-+.+. ......+.+..+.|+|.+ ..++-.+.|+.+.+-|..+..
T Consensus 164 Gs~D~k~rVfSayIK~V-dekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG-~~lawv~Hds~v~~~da~~p~ 239 (361)
T KOG1523|consen 164 GSTDGKCRVFSAYIKGV-DEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSG-NRLAWVGHDSTVSFVDAAGPS 239 (361)
T ss_pred cccCcceeEEEEeeecc-ccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCC-CEeeEecCCCceEEeecCCCc
Confidence 99999999996432111 1101100 111345789999999998 888889999999999988553
No 192
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.81 E-value=3.5e-18 Score=154.66 Aligned_cols=267 Identities=15% Similarity=0.179 Sum_probs=188.6
Q ss_pred cCcCceEEEEECCCCCEEEEEeCCCeEEEE-EcCCCeeecccccccccee-eccCcceeEEEE--cCCCCeEEEEeCCCe
Q 010362 211 GTKSHAECARFSPDGQFLVSCSFDGFIEVW-DYLSGKLKKDLQYQADETF-MMHDETVLCIEF--SRDSEMLASGSQDGK 286 (512)
Q Consensus 211 ~h~~~v~~~~~s~~~~~l~sg~~dg~i~iw-d~~~~~~~~~~~~~~~~~~-~~h~~~v~~l~~--s~~~~~l~s~~~dg~ 286 (512)
.|...|.|+.|+.+...+.+++ |..+.+| |+.+.+ ......++.... ..| +....- -.....|+.++.||.
T Consensus 12 r~~e~vc~v~w~~~eei~~~~d-Dh~~~~~~~~~~~s-~~~~~~p~df~pt~~h---~~~rs~~~g~~~d~~~i~s~DGk 86 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSNEEIYFVSD-DHQIFKWSDVSRDS-VEVAKLPDDFVPTDMH---LGGRSSGGGKGSDTLLICSNDGR 86 (737)
T ss_pred ccceeEEeecccccceEEEecc-CceEEEeecccchh-hhhhhCCcccCCcccc---ccccccCCCCCcceEEEEcCCce
Confidence 5666778999999888777766 5555555 443332 222211111000 001 000000 012357888999999
Q ss_pred EEEEEccCCeeeEEeccccccCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeeCCccceeEEEEcCCCCEEEEE
Q 010362 287 IKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTA 366 (512)
Q Consensus 287 i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 366 (512)
+.+.+ ..++.-..+. .|.+.+.+-.|+|||.-|++++.||.|++|. ++|-...++.....+|.|++|.|+.+.++.+
T Consensus 87 f~il~-k~~rVE~sv~-AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c~~W~p~S~~vl~c 163 (737)
T KOG1524|consen 87 FVILN-KSARVERSIS-AHAAAISSGRWSPDGAGLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRCARWAPNSNSIVFC 163 (737)
T ss_pred EEEec-ccchhhhhhh-hhhhhhhhcccCCCCceeeeecCCceEEEEe-ccchHHHHHhhcCceeEEEEECCCCCceEEe
Confidence 99987 5677666665 8999999999999999999999999999998 4665555555567789999999988766654
Q ss_pred eCCCcEEEEeCCCCceeeecCCCCCCCCCCceeEEEEEcCCCCCeEEEEcCCCcEEEEecCCeEEEEeeCCcccCCcEEE
Q 010362 367 SSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQVVKSFSSGKREGGDFVA 446 (512)
Q Consensus 367 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (512)
. .+.+.|=.+.....+-.+ ..|++-|.++.|+|.+ +++++|+.|-..++||..|..+... ..+..+|++
T Consensus 164 ~-g~h~~IKpL~~n~k~i~W------kAHDGiiL~~~W~~~s-~lI~sgGED~kfKvWD~~G~~Lf~S---~~~ey~ITS 232 (737)
T KOG1524|consen 164 Q-GGHISIKPLAANSKIIRW------RAHDGLVLSLSWSTQS-NIIASGGEDFRFKIWDAQGANLFTS---AAEEYAITS 232 (737)
T ss_pred c-CCeEEEeecccccceeEE------eccCcEEEEeecCccc-cceeecCCceeEEeecccCcccccC---Chhccceee
Confidence 4 345666555544333333 3689999999999988 9999999999999999998765443 345678999
Q ss_pred EEECCCCCEEEEEeCCCeEEEEEcCCCeeEEeccccCCCeEEEEEcCCCCeEEEEECCCeEEE
Q 010362 447 ACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPHRNLLATYGEDCTMKL 509 (512)
Q Consensus 447 ~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~~~dg~i~i 509 (512)
++|.|+ ..++.|+.+ +.+ .-+...+.|..++|+|||..++.|+..|.+.+
T Consensus 233 va~npd-~~~~v~S~n-t~R-----------~~~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~ 282 (737)
T KOG1524|consen 233 VAFNPE-KDYLLWSYN-TAR-----------FSSPRVGSIFNLSWSADGTQATCGTSTGQLIV 282 (737)
T ss_pred eeeccc-cceeeeeee-eee-----------ecCCCccceEEEEEcCCCceeeccccCceEEE
Confidence 999999 555555532 222 11234678999999999999999999998754
No 193
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.80 E-value=1.8e-18 Score=156.44 Aligned_cols=210 Identities=20% Similarity=0.331 Sum_probs=164.2
Q ss_pred CCEEEEEeCCCeEEEEEcCCCeeeccccccccceeeccCcceeEEEEcCCCCeEEEEeCCCeEEEEEccCCeeeEEeccc
Q 010362 225 GQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERA 304 (512)
Q Consensus 225 ~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~ 304 (512)
.+.|+.++.||.+.|.+ ..++....+ ..|.+.|.|-.|+|||.-|++++.||.|++|. ++|-...++. .
T Consensus 75 ~d~~~i~s~DGkf~il~-k~~rVE~sv--------~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWS-rsGMLRStl~-Q 143 (737)
T KOG1524|consen 75 SDTLLICSNDGRFVILN-KSARVERSI--------SAHAAAISSGRWSPDGAGLLTAGEDGVIKIWS-RSGMLRSTVV-Q 143 (737)
T ss_pred cceEEEEcCCceEEEec-ccchhhhhh--------hhhhhhhhhcccCCCCceeeeecCCceEEEEe-ccchHHHHHh-h
Confidence 45788889999999987 344444433 34999999999999999999999999999998 6676555554 5
Q ss_pred cccCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeeCCccceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCceee
Q 010362 305 HSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQ 384 (512)
Q Consensus 305 ~~~~i~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 384 (512)
...+|.|++|.|+.+.++.+. .+.+.+=.+.....+..++.|.+-|.++.|++..+.+++|+.|-..++||... ..+.
T Consensus 144 ~~~~v~c~~W~p~S~~vl~c~-g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G-~~Lf 221 (737)
T KOG1524|consen 144 NEESIRCARWAPNSNSIVFCQ-GGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQG-ANLF 221 (737)
T ss_pred cCceeEEEEECCCCCceEEec-CCeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeecccC-cccc
Confidence 678999999999987777665 45677777777777788999999999999999999999999999999999654 3332
Q ss_pred ecCCCCCCCCCCceeEEEEEcCCCCCeEEEEcCCCcEEEEecCCeEEEEeeCCcccCCcEEEEEECCCCCEEEEEeCCCe
Q 010362 385 TFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRN 464 (512)
Q Consensus 385 ~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~dg~ 464 (512)
.- ..|+.+|++++|.|+ ..+++++.+ ..+ +. ....+.+..++||+||..+++|+..|.
T Consensus 222 ~S------~~~ey~ITSva~npd--~~~~v~S~n-t~R-----------~~--~p~~GSifnlsWS~DGTQ~a~gt~~G~ 279 (737)
T KOG1524|consen 222 TS------AAEEYAITSVAFNPE--KDYLLWSYN-TAR-----------FS--SPRVGSIFNLSWSADGTQATCGTSTGQ 279 (737)
T ss_pred cC------Chhccceeeeeeccc--cceeeeeee-eee-----------ec--CCCccceEEEEEcCCCceeeccccCce
Confidence 22 347889999999998 445544432 111 11 223567999999999999999999998
Q ss_pred EEEEE
Q 010362 465 LYCFS 469 (512)
Q Consensus 465 i~iwd 469 (512)
+.+=.
T Consensus 280 v~~A~ 284 (737)
T KOG1524|consen 280 LIVAY 284 (737)
T ss_pred EEEee
Confidence 76543
No 194
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.80 E-value=8.3e-20 Score=173.22 Aligned_cols=240 Identities=21% Similarity=0.375 Sum_probs=188.3
Q ss_pred cceeeccCcceeEEEEcCCCCeEEEEeCCCeEEEEEccCCeeeEEeccccccCeEEEEEecCCCEEEEEeCCCcEEEEeC
Q 010362 256 DETFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGL 335 (512)
Q Consensus 256 ~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~i~d~ 335 (512)
...+.+|...|.|+.|...|.++++|+.|..++||..+++.++.... +|.+.|+.++.+.+..++++++.|..|++|-+
T Consensus 183 ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~r-Ghs~ditdlavs~~n~~iaaaS~D~vIrvWrl 261 (1113)
T KOG0644|consen 183 IKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCR-GHSGDITDLAVSSNNTMIAAASNDKVIRVWRL 261 (1113)
T ss_pred HHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCC-CCccccchhccchhhhhhhhcccCceEEEEec
Confidence 34677899999999999999999999999999999999999999997 99999999999999999999999999999999
Q ss_pred CCCceeEEeeCCccceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeecCCCCCCCCCCceeEEEEEcCCCCCeEEEE
Q 010362 336 KSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVC 415 (512)
Q Consensus 336 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~ 415 (512)
.++.++..+.+|.+.|++++|+|-. +.+.||++++||.+ .......+.+.. .....-+.++.+...+ .-+.++
T Consensus 262 ~~~~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r-~~~~~y~prp~~-~~~~~~~~s~~~~~~~-~~f~Tg 334 (1113)
T KOG0644|consen 262 PDGAPVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDAR-LEPRIYVPRPLK-FTEKDLVDSILFENNG-DRFLTG 334 (1113)
T ss_pred CCCchHHHHhccccceeeeccCccc----cCCCCCceEecccc-ccccccCCCCCC-cccccceeeeeccccc-cccccc
Confidence 9999999999999999999999954 77889999999998 222222111111 1223445555555544 678888
Q ss_pred cCCCcEEEEecCCeEEEEeeCCcccCCcEEEEEECCC-CCEEEEEeCCCeEEEEEcCCCeeEEeccccCCCeEEEEEcCC
Q 010362 416 NKTSSIYIMTLQGQVVKSFSSGKREGGDFVAACVSPK-GEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPH 494 (512)
Q Consensus 416 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-g~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~p~ 494 (512)
+.++.-..|.+....... ..+.-+..+.+ ..+.++.-.+-.+++|++.+|.+.+.+.+|...+..+.+||-
T Consensus 335 s~d~ea~n~e~~~l~~~~--------~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpf 406 (1113)
T KOG0644|consen 335 SRDGEARNHEFEQLAWRS--------NLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPF 406 (1113)
T ss_pred cCCcccccchhhHhhhhc--------cceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCC
Confidence 888888777665111100 00111111112 245566667888999999999999999999999999999995
Q ss_pred C-CeEEEEECCCeEEEec
Q 010362 495 R-NLLATYGEDCTMKLWK 511 (512)
Q Consensus 495 ~-~~l~s~~~dg~i~iW~ 511 (512)
+ ....+++.||...|||
T Consensus 407 n~ri~msag~dgst~iwd 424 (1113)
T KOG0644|consen 407 NPRIAMSAGYDGSTIIWD 424 (1113)
T ss_pred CcHhhhhccCCCceEeee
Confidence 4 5566999999999998
No 195
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.80 E-value=1e-17 Score=140.38 Aligned_cols=247 Identities=19% Similarity=0.275 Sum_probs=178.1
Q ss_pred EEEecCcCceEEEEECCCC-----CEEEEEeCCCeEEEEEcCCC--eeeccccccccceeeccCcceeEEEEcC-CCCeE
Q 010362 207 TIKFGTKSHAECARFSPDG-----QFLVSCSFDGFIEVWDYLSG--KLKKDLQYQADETFMMHDETVLCIEFSR-DSEML 278 (512)
Q Consensus 207 ~~~~~h~~~v~~~~~s~~~-----~~l~sg~~dg~i~iwd~~~~--~~~~~~~~~~~~~~~~h~~~v~~l~~s~-~~~~l 278 (512)
.-.+.|.-+++.+.|.|+. ++|||++ ..+++|.+... +......... ..-..+..++++..|+. +-+++
T Consensus 90 ~a~fd~~YP~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~-~kns~~~aPlTSFDWne~dp~~i 166 (364)
T KOG0290|consen 90 DANFDHPYPVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVELQSVLNN-NKNSEFCAPLTSFDWNEVDPNLI 166 (364)
T ss_pred cCCCCCCCCccceEecCCccccCcchhhccc--CeEEEEeccCcCCceehhhhhcc-CcccccCCcccccccccCCccee
Confidence 3346899999999999976 3566655 47999998742 2211111111 11233678999999998 67899
Q ss_pred EEEeCCCeEEEEEccCCee--eEEeccccccCeEEEEEecCC-CEEEEEeCCCcEEEEeCCCCceeEEe---eCCcccee
Q 010362 279 ASGSQDGKIKVWRIRSGQC--LRRLERAHSEGVTSLVFSRDG-SQILSTSFDSTARIHGLKSGKLLKEF---RGHSSYVN 352 (512)
Q Consensus 279 ~s~~~dg~i~vwd~~~~~~--~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~v~i~d~~~~~~~~~~---~~~~~~v~ 352 (512)
.++|-|-+..|||++++.. +++..-.|...|..++|...+ ..|++.+.||.|+++|++.-+.-..+ .....+..
T Consensus 167 gtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLl 246 (364)
T KOG0290|consen 167 GTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLL 246 (364)
T ss_pred EeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcce
Confidence 9999999999999998733 333334899999999999854 57889999999999999876543322 22245788
Q ss_pred EEEEcC-CCCEEEEEeCC-CcEEEEeCCCCceeeecCCCCCCCCCCceeEEEEEcCCCCCeEEEEcCCCcEEEEecCCeE
Q 010362 353 DAIFTN-DGSRVVTASSD-CTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQV 430 (512)
Q Consensus 353 ~~~~~~-~~~~l~~~~~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~ 430 (512)
.++|++ |-+++++-..| ..|.|.|+|... .+...+++|.+.|++++|.|.....+.+++.|....+||+....
T Consensus 247 RLswnkqDpnymATf~~dS~~V~iLDiR~P~-----tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~ 321 (364)
T KOG0290|consen 247 RLSWNKQDPNYMATFAMDSNKVVILDIRVPC-----TPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMP 321 (364)
T ss_pred eeccCcCCchHHhhhhcCCceEEEEEecCCC-----cceehhhcCcccccceEecCCCCceeeecCCcceEEEEeccccc
Confidence 899988 44567765544 469999998653 23345568999999999999999999999999999999998432
Q ss_pred EEEe---eCCcccCCcEEEEEECC-CCCEEEEEeC
Q 010362 431 VKSF---SSGKREGGDFVAACVSP-KGEWIYCVGE 461 (512)
Q Consensus 431 ~~~~---~~~~~~~~~~~~~~~s~-~g~~l~~g~~ 461 (512)
.... ......++.|..+.|++ .+.+++.+..
T Consensus 322 ~~~~~dPilay~a~~EVNqi~Ws~~~~Dwiai~~~ 356 (364)
T KOG0290|consen 322 RENGEDPILAYTAGGEVNQIQWSSSQPDWIAICFG 356 (364)
T ss_pred ccCCCCchhhhhccceeeeeeecccCCCEEEEEec
Confidence 2111 11112356799999985 5677776654
No 196
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.79 E-value=2.1e-17 Score=159.82 Aligned_cols=235 Identities=17% Similarity=0.167 Sum_probs=163.6
Q ss_pred CCeEEEEEcCCCeeeccccccccceeeccCcceeEEEEcCCCCeEEEEeCC---CeEEEEEccCCeeeEEeccccccCeE
Q 010362 234 DGFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQD---GKIKVWRIRSGQCLRRLERAHSEGVT 310 (512)
Q Consensus 234 dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d---g~i~vwd~~~~~~~~~~~~~~~~~i~ 310 (512)
+..|.+||.+.... . .+..|...+.+.+|+|||+.|+.++.+ ..|++||+.+++..... ...+...
T Consensus 183 ~~~i~i~d~dg~~~-~--------~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~--~~~g~~~ 251 (429)
T PRK01742 183 PYEVRVADYDGFNQ-F--------IVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVA--SFRGHNG 251 (429)
T ss_pred eEEEEEECCCCCCc-e--------EeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEe--cCCCccC
Confidence 46899999865442 1 233477889999999999999988754 36999999887643221 1223345
Q ss_pred EEEEecCCCEEEEEe-CCCcEEE--EeCCCCceeEEeeCCccceeEEEEcCCCCEEEEEe-CCCcEEEEeCCCCceeeec
Q 010362 311 SLVFSRDGSQILSTS-FDSTARI--HGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTAS-SDCTVKVWDLKSTDCLQTF 386 (512)
Q Consensus 311 ~~~~~~~~~~l~~~~-~dg~v~i--~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~ 386 (512)
.++|+|||+.|+.++ .+|.+.+ ||+.+++ ...+..+...+.+..|+|||+.|+.++ .+|...+|++.........
T Consensus 252 ~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~ 330 (429)
T PRK01742 252 APAFSPDGSRLAFASSKDGVLNIYVMGANGGT-PSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASL 330 (429)
T ss_pred ceeECCCCCEEEEEEecCCcEEEEEEECCCCC-eEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEE
Confidence 789999999988765 5776554 5665555 445666777788999999999877555 5788888876542211111
Q ss_pred CCCCCCCCCCceeEEEEEcCCCCCeEEEEcCCCcEEEEecCCeEEEEeeCCcccCCcEEEEEECCCCCEEEEEeCCCeEE
Q 010362 387 KPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLY 466 (512)
Q Consensus 387 ~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~dg~i~ 466 (512)
.. +.. ....|+|++ ..+++.+.+ .+..||+.+.....+.... ......|+|||++|++++.+|.+.
T Consensus 331 l~------~~~--~~~~~SpDG-~~ia~~~~~-~i~~~Dl~~g~~~~lt~~~----~~~~~~~sPdG~~i~~~s~~g~~~ 396 (429)
T PRK01742 331 VG------GRG--YSAQISADG-KTLVMINGD-NVVKQDLTSGSTEVLSSTF----LDESPSISPNGIMIIYSSTQGLGK 396 (429)
T ss_pred ec------CCC--CCccCCCCC-CEEEEEcCC-CEEEEECCCCCeEEecCCC----CCCCceECCCCCEEEEEEcCCCce
Confidence 11 111 346789998 555555554 4666898755443333221 124578999999999999999888
Q ss_pred EEEc--CCCeeEEeccccCCCeEEEEEcCC
Q 010362 467 CFSH--QSGKLEHLMKVHEKDVIGVTHHPH 494 (512)
Q Consensus 467 iwd~--~~~~~~~~~~~h~~~v~~v~~~p~ 494 (512)
+|++ .+|.....+..|.+.+...+|+|-
T Consensus 397 ~l~~~~~~G~~~~~l~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 397 VLQLVSADGRFKARLPGSDGQVKFPAWSPY 426 (429)
T ss_pred EEEEEECCCCceEEccCCCCCCCCcccCCC
Confidence 8875 368888888888888999999984
No 197
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.78 E-value=2.3e-16 Score=129.07 Aligned_cols=239 Identities=18% Similarity=0.246 Sum_probs=169.0
Q ss_pred ecCcCceEEEEECCCCCEEEEEeCCCeEEEEEcCCCee----ecccccc-ccceeeccCcceeEEEEcCCCCeEEEEeCC
Q 010362 210 FGTKSHAECARFSPDGQFLVSCSFDGFIEVWDYLSGKL----KKDLQYQ-ADETFMMHDETVLCIEFSRDSEMLASGSQD 284 (512)
Q Consensus 210 ~~h~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~----~~~~~~~-~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d 284 (512)
.+|.++|..++|. .++|++|+ ||.|+-|..+.... ...+... +.++-...-..|++|...|..+-+++++.|
T Consensus 59 qahdgpiy~~~f~--d~~Lls~g-dG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD 135 (325)
T KOG0649|consen 59 QAHDGPIYYLAFH--DDFLLSGG-DGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGD 135 (325)
T ss_pred cccCCCeeeeeee--hhheeecc-CceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCC
Confidence 5999999999998 45777777 69999998754322 1111111 111101123468999999988778888899
Q ss_pred CeEEEEEccCCeeeEEeccccccCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeeCC---------c-cceeEE
Q 010362 285 GKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRGH---------S-SYVNDA 354 (512)
Q Consensus 285 g~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~---------~-~~v~~~ 354 (512)
+.++-||+++|+..+.+. +|+..|.++.--.....+++|+.||++++||.++++.+..+... . ..|-++
T Consensus 136 ~~~y~~dlE~G~i~r~~r-GHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigal 214 (325)
T KOG0649|consen 136 GVIYQVDLEDGRIQREYR-GHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGAL 214 (325)
T ss_pred eEEEEEEecCCEEEEEEc-CCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEE
Confidence 999999999999999987 99999999998555667999999999999999999988876432 1 234445
Q ss_pred EEcCCCCEEEEEeCCCcEEEEeCCCCceeeecCCCCCCCCCCceeEEEEEcCCCCCeEEEEcCCCcEEEEecCCeEEEEe
Q 010362 355 IFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQVVKSF 434 (512)
Q Consensus 355 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~ 434 (512)
+. +..++++|+. ..+.+|.+++.++...++.+. ++..+.|.. +.+++++....+.-|.+.|......
T Consensus 215 a~--~edWlvCGgG-p~lslwhLrsse~t~vfpipa-------~v~~v~F~~---d~vl~~G~g~~v~~~~l~Gvl~a~i 281 (325)
T KOG0649|consen 215 AV--NEDWLVCGGG-PKLSLWHLRSSESTCVFPIPA-------RVHLVDFVD---DCVLIGGEGNHVQSYTLNGVLQANI 281 (325)
T ss_pred ec--cCceEEecCC-CceeEEeccCCCceEEEeccc-------ceeEeeeec---ceEEEeccccceeeeeeccEEEEec
Confidence 44 4558887764 569999999999888887543 555666643 6788888888999999988766555
Q ss_pred eCCcccCCcEEEEEECCC-CCEEEEEeCCCeEEEE
Q 010362 435 SSGKREGGDFVAACVSPK-GEWIYCVGEDRNLYCF 468 (512)
Q Consensus 435 ~~~~~~~~~~~~~~~s~~-g~~l~~g~~dg~i~iw 468 (512)
.... .......++.. -++|-.++....+.|+
T Consensus 282 p~~s---~~c~s~s~~~~p~k~~s~ag~s~~~~i~ 313 (325)
T KOG0649|consen 282 PVES---TACYSASWQTSPIKFISIAGFSNKLHIL 313 (325)
T ss_pred cCCc---cceeeecccCCceEEEEecccceeeeee
Confidence 4432 12334444322 2344445555556554
No 198
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.78 E-value=2.7e-16 Score=135.89 Aligned_cols=280 Identities=16% Similarity=0.245 Sum_probs=191.9
Q ss_pred ceEEEEECCCCCEEEEEeCCCeEEEEEcCCCeeeccccccccceeeccCcceeEEEEcCCC-CeEEEEeCCCeEEEEEcc
Q 010362 215 HAECARFSPDGQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDS-EMLASGSQDGKIKVWRIR 293 (512)
Q Consensus 215 ~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~-~~l~s~~~dg~i~vwd~~ 293 (512)
.+..++|++.-..+|++..|-.|++||-+. +....++. .....|+|++|-|.+ ..|+.|+. +-|.+|...
T Consensus 100 dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks-------~sQrnvtclawRPlsaselavgCr-~gIciW~~s 170 (445)
T KOG2139|consen 100 DLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKS-------VSQRNVTCLAWRPLSASELAVGCR-AGICIWSDS 170 (445)
T ss_pred ceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecc-------hhhcceeEEEeccCCcceeeeeec-ceeEEEEcC
Confidence 467789999877899999999999999655 33332221 134679999999954 56777765 569999764
Q ss_pred CCe----e--------eEEeccccccCeEEEEEecCCCEEEEEeC-CCcEEEEeCCCCceeEEeeCCccceeEEEEcCCC
Q 010362 294 SGQ----C--------LRRLERAHSEGVTSLVFSRDGSQILSTSF-DSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDG 360 (512)
Q Consensus 294 ~~~----~--------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~ 360 (512)
..- . ...+......+|+++.|++||..+++++. |..|.+||..++..+.-.....+.++-+.|+|||
T Consensus 171 ~tln~~r~~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdg 250 (445)
T KOG2139|consen 171 RTLNANRNIRMMSTHHLQVLQDPGHNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDG 250 (445)
T ss_pred cccccccccccccccchhheeCCCCceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCC
Confidence 321 1 11122223378999999999999999886 5689999999987766554455668899999999
Q ss_pred CEEEEEeCCCcEEEEeCCCC-ceeeecCCCCCCCCCCceeEEEEEcCCCCCeEEEEcCCCcEEEEecCCeEEEEe-----
Q 010362 361 SRVVTASSDCTVKVWDLKST-DCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQVVKSF----- 434 (512)
Q Consensus 361 ~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~----- 434 (512)
.+|+++.-|+..++|+.... ....-. ...+.|....|+|.+..++++++....++-....++.....
T Consensus 251 d~lfaAt~davfrlw~e~q~wt~erw~-------lgsgrvqtacWspcGsfLLf~~sgsp~lysl~f~~~~~~~~~~~~~ 323 (445)
T KOG2139|consen 251 DVLFAATCDAVFRLWQENQSWTKERWI-------LGSGRVQTACWSPCGSFLLFACSGSPRLYSLTFDGEDSVFLRPQSI 323 (445)
T ss_pred CEEEEecccceeeeehhcccceeccee-------ccCCceeeeeecCCCCEEEEEEcCCceEEEEeecCCCccccCcccc
Confidence 99999999999999954432 222111 23458999999999988999998888877665543211100
Q ss_pred ---------------eCCcccCCcEEEEEECCCCCEEEEEeCCC--------eEEEEEcCCCeeEEecc-c--cCCCeEE
Q 010362 435 ---------------SSGKREGGDFVAACVSPKGEWIYCVGEDR--------NLYCFSHQSGKLEHLMK-V--HEKDVIG 488 (512)
Q Consensus 435 ---------------~~~~~~~~~~~~~~~s~~g~~l~~g~~dg--------~i~iwd~~~~~~~~~~~-~--h~~~v~~ 488 (512)
.....-.+...+++|.|.|.++++.-..+ .|.+||.+..-...... + .......
T Consensus 324 k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels~cg~i~ge~P~~ 403 (445)
T KOG2139|consen 324 KRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELSYCGMIGGEYPAY 403 (445)
T ss_pred eeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceEEEecccccCCCCce
Confidence 00111246788999999999999876443 37778876544333221 1 1122456
Q ss_pred EEEcC---CCCeEEEEECCCeEEEe
Q 010362 489 VTHHP---HRNLLATYGEDCTMKLW 510 (512)
Q Consensus 489 v~~~p---~~~~l~s~~~dg~i~iW 510 (512)
++|+| ++.+|..+=..|.+.-|
T Consensus 404 IsF~pl~n~g~lLsiaWsTGriq~y 428 (445)
T KOG2139|consen 404 ISFGPLKNEGRLLSIAWSTGRIQRY 428 (445)
T ss_pred EEeeecccCCcEEEEEeccCceEee
Confidence 67776 45666666667776544
No 199
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.78 E-value=6.3e-18 Score=153.46 Aligned_cols=221 Identities=20% Similarity=0.300 Sum_probs=170.9
Q ss_pred ceeeccCcceeEEEEcCCCCeEEEEeCCCeEEEEEccCCeeeEEeccccccCeEEEEEec--CCCEEEEEeCCCcEEEEe
Q 010362 257 ETFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSR--DGSQILSTSFDSTARIHG 334 (512)
Q Consensus 257 ~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~l~~~~~dg~v~i~d 334 (512)
..+.||.+.|+|++|+.+|.+|++||.|-.+.|||....+.+..+..+|...|.++.|-| +...+++|..|..|+++|
T Consensus 44 ~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfd 123 (758)
T KOG1310|consen 44 AELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFD 123 (758)
T ss_pred hhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEe
Confidence 467889999999999999999999999999999999999999999999999999999999 567889999999999999
Q ss_pred CCC----------CceeEEeeCCccceeEEEEcCCC-CEEEEEeCCCcEEEEeCCCCceeee-cCCCC---CCCCCCcee
Q 010362 335 LKS----------GKLLKEFRGHSSYVNDAIFTNDG-SRVVTASSDCTVKVWDLKSTDCLQT-FKPPP---PLRGGDASV 399 (512)
Q Consensus 335 ~~~----------~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~-~~~~~---~~~~~~~~i 399 (512)
+.. ......+..|...|..++-.|++ +.+.+++.||+|+-+|++....-.. ...+. .....-...
T Consensus 124 l~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~liel 203 (758)
T KOG1310|consen 124 LDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIEL 203 (758)
T ss_pred cccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhhee
Confidence 974 23345567799999999999988 7899999999999999997421111 00000 011122467
Q ss_pred EEEEEcCCCCCeEEEEcCCCcEEEEecCCe-------------------EEEEeeCCcc--c----C---CcEEEEEECC
Q 010362 400 NSVHLFPKNPDHIVVCNKTSSIYIMTLQGQ-------------------VVKSFSSGKR--E----G---GDFVAACVSP 451 (512)
Q Consensus 400 ~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~-------------------~~~~~~~~~~--~----~---~~~~~~~~s~ 451 (512)
.++.++|..+.++++|+.+...++||.+.. .+..+..+.. . . ..++-+.|+|
T Consensus 204 k~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtfnp 283 (758)
T KOG1310|consen 204 KCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTFNP 283 (758)
T ss_pred eeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEEEECC
Confidence 889999999999999999999999994311 0111111111 0 0 1145678899
Q ss_pred CCCEEEEEeCCCeEEEEEcCCCeeEE
Q 010362 452 KGEWIYCVGEDRNLYCFSHQSGKLEH 477 (512)
Q Consensus 452 ~g~~l~~g~~dg~i~iwd~~~~~~~~ 477 (512)
+|.-|++.-....|+++|+..++...
T Consensus 284 NGtElLvs~~gEhVYlfdvn~~~~~~ 309 (758)
T KOG1310|consen 284 NGTELLVSWGGEHVYLFDVNEDKSPT 309 (758)
T ss_pred CCcEEEEeeCCeEEEEEeecCCCCce
Confidence 99988877777799999998776443
No 200
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.77 E-value=1.2e-17 Score=147.36 Aligned_cols=196 Identities=23% Similarity=0.303 Sum_probs=150.1
Q ss_pred EEEEECCCCCEEEEEeCCCeEEEEEcCCCeeeccccccccceeeccCcceeEEEEcCCCCeEEEEeCCCeEEEEEccCCe
Q 010362 217 ECARFSPDGQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQ 296 (512)
Q Consensus 217 ~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~ 296 (512)
.+++|+++|..+++|+.||++|||++......... ..|...|.++.|+|||+.|++.+.| ..+||++.+|.
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e--------~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~ 218 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEE--------IAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGA 218 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhh--------HhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCc
Confidence 78999999999999999999999997665544322 2389999999999999999999999 89999999997
Q ss_pred eeEEec-cccccCeEEEEEecCC---CEEE--EEeCCCcEEEEeCCCCce---e--EEeeCCccceeEEEEcCCCCEEEE
Q 010362 297 CLRRLE-RAHSEGVTSLVFSRDG---SQIL--STSFDSTARIHGLKSGKL---L--KEFRGHSSYVNDAIFTNDGSRVVT 365 (512)
Q Consensus 297 ~~~~~~-~~~~~~i~~~~~~~~~---~~l~--~~~~dg~v~i~d~~~~~~---~--~~~~~~~~~v~~~~~~~~~~~l~~ 365 (512)
.+.... .........+.|+.|+ .+.+ .....+.|..||+..... . .+.......|++++.+++|++++.
T Consensus 219 ~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~Al 298 (398)
T KOG0771|consen 219 ALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLAL 298 (398)
T ss_pred hhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEE
Confidence 776665 2334557788888776 3332 333446677766543221 1 111112335999999999999999
Q ss_pred EeCCCcEEEEeCCCCceeeecCCCCCCCCCCceeEEEEEcCCCCCeEEEEcCCCcEEEEecC
Q 010362 366 ASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQ 427 (512)
Q Consensus 366 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~~~~~ 427 (512)
|+.||.|.|++..+.+..+..+ ..|...|+.+.|+|+. ..++..+.+....+..+.
T Consensus 299 GT~dGsVai~~~~~lq~~~~vk-----~aH~~~VT~ltF~Pds-r~~~svSs~~~~~v~~l~ 354 (398)
T KOG0771|consen 299 GTMDGSVAIYDAKSLQRLQYVK-----EAHLGFVTGLTFSPDS-RYLASVSSDNEAAVTKLA 354 (398)
T ss_pred eccCCcEEEEEeceeeeeEeeh-----hhheeeeeeEEEcCCc-CcccccccCCceeEEEEe
Confidence 9999999999999888777665 4678899999999987 666667777776666554
No 201
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.77 E-value=2.8e-16 Score=134.14 Aligned_cols=274 Identities=18% Similarity=0.265 Sum_probs=190.9
Q ss_pred EEEECCCCCEEEEEeCCCeEEEEEcCCCeeeccccccccceeeccCcceeEEEEcCCCCeEEE-EeCCCeEEEEEccCCe
Q 010362 218 CARFSPDGQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLAS-GSQDGKIKVWRIRSGQ 296 (512)
Q Consensus 218 ~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s-~~~dg~i~vwd~~~~~ 296 (512)
-++|||+|+++|+++.- .+.|-|.++-+..+-+. .-..|..+.|..|..+++. ...|+.|.+|++...+
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~---------cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpe 82 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFL---------CLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPE 82 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccchhhHHHHHH---------HHHHhhheeeeccceeeeeeeeccceEEEEEeecce
Confidence 36899999999999854 88888877766544332 2456888999988776554 5678899999999999
Q ss_pred eeEEeccccccCeEEEEEecCCCEEE-EEeCCCcEEEEeCCCCceeEEeeCCccceeEEEEcCCCCEEEEEeCC------
Q 010362 297 CLRRLERAHSEGVTSLVFSRDGSQIL-STSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSD------ 369 (512)
Q Consensus 297 ~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------ 369 (512)
-..++. ....++.+++|+|||+.++ +...+-.|.+|.+.+.+... ++..+..+..++|+|||++.+..+.-
T Consensus 83 w~ckId-eg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~-~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv 160 (447)
T KOG4497|consen 83 WYCKID-EGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYL-LPHPKTNVKGYAFHPDGQFCAILSRRDCKDYV 160 (447)
T ss_pred eEEEec-cCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEE-ecccccCceeEEECCCCceeeeeecccHHHHH
Confidence 888887 6788999999999996554 56668899999997765433 22223345778888888877666531
Q ss_pred ------------------------------CcEEEEeCCCCceeeecCCCCCCCCCCceeEEEEEcCCCCCeEEEEcCCC
Q 010362 370 ------------------------------CTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTS 419 (512)
Q Consensus 370 ------------------------------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~ 419 (512)
..+.+||.--.-.+.. ......+..+.|+|.+ .++++|+.|+
T Consensus 161 ~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~a-------Ye~~lG~k~v~wsP~~-qflavGsyD~ 232 (447)
T KOG4497|consen 161 QISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYA-------YERGLGLKFVEWSPCN-QFLAVGSYDQ 232 (447)
T ss_pred HHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeee-------eeeccceeEEEecccc-ceEEeeccch
Confidence 1233333211111000 0122457788999987 8999999998
Q ss_pred cEEEEecC-----CeEE--------------------------------------------------------EEe---e
Q 010362 420 SIYIMTLQ-----GQVV--------------------------------------------------------KSF---S 435 (512)
Q Consensus 420 ~i~~~~~~-----~~~~--------------------------------------------------------~~~---~ 435 (512)
.+++.+-- ++-. ... .
T Consensus 233 ~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~t 312 (447)
T KOG4497|consen 233 MLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPT 312 (447)
T ss_pred hhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCC
Confidence 87764321 1000 000 0
Q ss_pred CCcccCCcEEEEEECCCCCEEEEEeC--CCeEEEEEcCCCeeEEeccccCCCeEEEEEcCCCCeEEEEECCCeEEEecC
Q 010362 436 SGKREGGDFVAACVSPKGEWIYCVGE--DRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPHRNLLATYGEDCTMKLWKP 512 (512)
Q Consensus 436 ~~~~~~~~~~~~~~s~~g~~l~~g~~--dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~~~dg~i~iW~~ 512 (512)
........+.-++|++|..|+++-.+ -+.+.+||++..++-..+. ...+|.+..|+|....|+.+....++++|-|
T Consensus 313 D~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLi-Qk~piraf~WdP~~prL~vctg~srLY~W~p 390 (447)
T KOG4497|consen 313 DFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLI-QKHPIRAFEWDPGRPRLVVCTGKSRLYFWAP 390 (447)
T ss_pred CCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhh-hccceeEEEeCCCCceEEEEcCCceEEEEcC
Confidence 00111233557899999999998874 4579999999887766654 5678999999999888888888888999975
No 202
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.77 E-value=6.9e-17 Score=157.53 Aligned_cols=278 Identities=17% Similarity=0.230 Sum_probs=195.9
Q ss_pred cccccccCccccceEEEec--CcCceEEEEECC--CCCEEEEEeCCCeEEEEEc-CCC----eeeccccccccceeeccC
Q 010362 193 KQDVEDMYPTTLSHTIKFG--TKSHAECARFSP--DGQFLVSCSFDGFIEVWDY-LSG----KLKKDLQYQADETFMMHD 263 (512)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~--h~~~v~~~~~s~--~~~~l~sg~~dg~i~iwd~-~~~----~~~~~~~~~~~~~~~~h~ 263 (512)
...+|+....+....+..+ ....|+.+.+-. |..++.+|+.||.|+||+- .++ +.+.....- .....+..
T Consensus 1087 ~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~L-s~~~~~~r 1165 (1387)
T KOG1517|consen 1087 RIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSL-SDQLPGAR 1165 (1387)
T ss_pred eEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccccccCCceeEEeeccc-cccCccCC
Confidence 4566776666655544422 235688888755 5568999999999999963 221 222111110 01111122
Q ss_pred cceeEEEEcCCCCeEEEEeCCCeEEEEEccCCeeeEEeccccccCeEEEEEec-CCCEEEEEeCCCcEEEEeCCCCc---
Q 010362 264 ETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSR-DGSQILSTSFDSTARIHGLKSGK--- 339 (512)
Q Consensus 264 ~~v~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~v~i~d~~~~~--- 339 (512)
+.=.-+.|.....+|++++.-..|+|||......+..+..+....|+++.-+. .|+.+++|..||.|++||.+...
T Consensus 1166 ~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds 1245 (1387)
T KOG1517|consen 1166 GTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDS 1245 (1387)
T ss_pred CCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccc
Confidence 22255678887677777776889999999999888888766677788876544 47999999999999999987653
Q ss_pred eeEEeeCCccc--eeEEEEcCCCCE-EEEEeCCCcEEEEeCCCCceeeecCCCCCCCCCCceeEEEEEcCCCCCeEEEEc
Q 010362 340 LLKEFRGHSSY--VNDAIFTNDGSR-VVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCN 416 (512)
Q Consensus 340 ~~~~~~~~~~~--v~~~~~~~~~~~-l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~ 416 (512)
.+...+.|+.. |..+.+.+.|-. |++|+.||.|++||++... ..++........-.+..+++..++.. ..+++|+
T Consensus 1246 ~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~-~e~~~~iv~~~~yGs~lTal~VH~ha-piiAsGs 1323 (1387)
T KOG1517|consen 1246 LVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSS-KETFLTIVAHWEYGSALTALTVHEHA-PIIASGS 1323 (1387)
T ss_pred cceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCc-ccccceeeeccccCccceeeeeccCC-CeeeecC
Confidence 46778888887 999999886654 9999999999999999852 22222111111112358889998876 7888888
Q ss_pred CCCcEEEEecCCeEEEEeeCCc----ccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCe
Q 010362 417 KTSSIYIMTLQGQVVKSFSSGK----REGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGK 474 (512)
Q Consensus 417 ~~~~i~~~~~~~~~~~~~~~~~----~~~~~~~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~ 474 (512)
. +.|.+|++.|..+..+.... ...+.+.+++|+|..-.+++|+.|..|.||....+.
T Consensus 1324 ~-q~ikIy~~~G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1324 A-QLIKIYSLSGEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred c-ceEEEEecChhhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeecCCcC
Confidence 7 99999999987665544321 123567899999999999999999999999876543
No 203
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.77 E-value=1.1e-15 Score=146.86 Aligned_cols=289 Identities=18% Similarity=0.244 Sum_probs=205.4
Q ss_pred eEEEEECCCCCEEEEEeCCCeEEEEEcCCCeeeccccccccceeeccCcceeEEEEcCCCCeEEEEeCCCeEEEEEccC-
Q 010362 216 AECARFSPDGQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWRIRS- 294 (512)
Q Consensus 216 v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~vwd~~~- 294 (512)
-.++.+++.|.+.+..- +..+.+|+...+.. .... ...-..|...++|.++||+++++|+|..||.|.+|.--.
T Consensus 163 ~~~I~~~~~ge~~~i~~-~~~~~~~~v~~~~~-~~~~---~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~ 237 (792)
T KOG1963|consen 163 PKSIVDNNSGEFKGIVH-MCKIHIYFVPKHTK-HTSS---RDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGS 237 (792)
T ss_pred CccEEEcCCceEEEEEE-eeeEEEEEecccce-eecc---chhhhhhcccceeEEeccccceEEEeccCCcEEEEecccc
Confidence 46788899998777766 56789999877541 1111 111223777899999999999999999999999996322
Q ss_pred --CeeeEEeccccccCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeeCCccceeEEEEcCCCCEEEEEeCCCcE
Q 010362 295 --GQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTV 372 (512)
Q Consensus 295 --~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 372 (512)
.....+...=|...|.+++|+++|.+|++|+..|.+.+|.+.+++ ..-+..-.++|..+.++||+.+.+....|..|
T Consensus 238 ~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~-kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI 316 (792)
T KOG1963|consen 238 SDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGK-KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQI 316 (792)
T ss_pred ccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecCCC-cccccccCCeeEEEEEcCCCCeEEEEecCceE
Confidence 122222223678899999999999999999999999999999988 55566678899999999999999999999999
Q ss_pred EEEeCCCCceeeecCCCCCC-----CCCCceeEEEEEcCCCCCeEEEEcCCCcEEEEecCCe-EEEEeeC-------Cc-
Q 010362 373 KVWDLKSTDCLQTFKPPPPL-----RGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQ-VVKSFSS-------GK- 438 (512)
Q Consensus 373 ~iwd~~~~~~~~~~~~~~~~-----~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~-~~~~~~~-------~~- 438 (512)
.+....+.....++....+. .....-.+.++++|.. +.++.++..+.+.+||+... .+..+.. +.
T Consensus 317 ~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~-~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~ 395 (792)
T KOG1963|consen 317 HLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRT-NSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDV 395 (792)
T ss_pred EEEeccchhhhhhccCccCCCccccccccccceeEEEcCCC-CceeecCCCceEEEEeccccceeeeEEEEeecccCCcc
Confidence 99987665544443332221 1224456778888844 78899999999999998732 2222111 11
Q ss_pred ccCCcEEEEEECCCCCEEEEEeC--------CC--eEEEEEcCCCe----eEE-eccccCCCeEEEEEcC-CCC-eEEEE
Q 010362 439 REGGDFVAACVSPKGEWIYCVGE--------DR--NLYCFSHQSGK----LEH-LMKVHEKDVIGVTHHP-HRN-LLATY 501 (512)
Q Consensus 439 ~~~~~~~~~~~s~~g~~l~~g~~--------dg--~i~iwd~~~~~----~~~-~~~~h~~~v~~v~~~p-~~~-~l~s~ 501 (512)
.....++.++.+..|.+++++-. || .+++|-..... +.. ....|...+...++.+ ... ..+++
T Consensus 396 n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta 475 (792)
T KOG1963|consen 396 NIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTA 475 (792)
T ss_pred eeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEe
Confidence 11234567777888999998752 33 57888765433 222 2346776655555544 333 89999
Q ss_pred ECCCeEEEec
Q 010362 502 GEDCTMKLWK 511 (512)
Q Consensus 502 ~~dg~i~iW~ 511 (512)
|.||.++||-
T Consensus 476 ~~dg~~KiW~ 485 (792)
T KOG1963|consen 476 SVDGDFKIWV 485 (792)
T ss_pred ccCCeEEEEE
Confidence 9999999994
No 204
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.76 E-value=2.2e-15 Score=140.77 Aligned_cols=305 Identities=16% Similarity=0.193 Sum_probs=190.3
Q ss_pred cccccccccCccccceEEEecCcCceEEEEECCCCCEEEEEeCCCeEEEEEcCCCeeeccccccccceeeccCcceeEEE
Q 010362 191 AMKQDVEDMYPTTLSHTIKFGTKSHAECARFSPDGQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIE 270 (512)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~ 270 (512)
.....+.|....+...++..+.. .-..+.|+|||+++++++.||.|.++|+.+++....+. -.....+++
T Consensus 15 ~~~v~viD~~t~~~~~~i~~~~~-~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~---------~G~~~~~i~ 84 (369)
T PF02239_consen 15 SGSVAVIDGATNKVVARIPTGGA-PHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIK---------VGGNPRGIA 84 (369)
T ss_dssp GTEEEEEETTT-SEEEEEE-STT-EEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE----------SSEEEEEE
T ss_pred CCEEEEEECCCCeEEEEEcCCCC-ceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEe---------cCCCcceEE
Confidence 44555667777777888875443 23457899999999999999999999999999887665 345678899
Q ss_pred EcCCCCeEEEEe-CCCeEEEEEccCCeeeEEeccc------cccCeEEEEEecCCCEEEEEeCC-CcEEEEeCCCCceeE
Q 010362 271 FSRDSEMLASGS-QDGKIKVWRIRSGQCLRRLERA------HSEGVTSLVFSRDGSQILSTSFD-STARIHGLKSGKLLK 342 (512)
Q Consensus 271 ~s~~~~~l~s~~-~dg~i~vwd~~~~~~~~~~~~~------~~~~i~~~~~~~~~~~l~~~~~d-g~v~i~d~~~~~~~~ 342 (512)
+++||+++++++ .++.+.++|..+.+.++.+... ....+.++..+|....++..-.| +.|.+.|....+.+.
T Consensus 85 ~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~ 164 (369)
T PF02239_consen 85 VSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLK 164 (369)
T ss_dssp E--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEE
T ss_pred EcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccc
Confidence 999999998775 5899999999999998887632 23467888888888866666554 788888987665432
Q ss_pred -EeeCCccceeEEEEcCCCCEEEEE-eCCCcEEEEeCCCCceeeecCCCCCCCCCCceeEEEEEcCCC---------CCe
Q 010362 343 -EFRGHSSYVNDAIFTNDGSRVVTA-SSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKN---------PDH 411 (512)
Q Consensus 343 -~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---------~~~ 411 (512)
.............|+|++++++++ ..+..|-++|..+++....+.... ..+..+...+ .+|.. ...
T Consensus 165 ~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~--~p~~~~~~~~-php~~g~vw~~~~~~~~ 241 (369)
T PF02239_consen 165 VTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGK--KPHPGPGANF-PHPGFGPVWATSGLGYF 241 (369)
T ss_dssp EEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SS--SBEETTEEEE-EETTTEEEEEEEBSSSS
T ss_pred eeeecccccccccccCcccceeeecccccceeEEEeeccceEEEEeeccc--cccccccccc-cCCCcceEEeeccccce
Confidence 222234457789999999987665 456789999999887766544321 1122222222 12221 122
Q ss_pred EEEEcCCCcEEEEecC-CeEEEEeeCCcccCCcEEEEEECCCCCEEEEE----eCCCeEEEEEcCCCeeEEecccc-CCC
Q 010362 412 IVVCNKTSSIYIMTLQ-GQVVKSFSSGKREGGDFVAACVSPKGEWIYCV----GEDRNLYCFSHQSGKLEHLMKVH-EKD 485 (512)
Q Consensus 412 l~~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g----~~dg~i~iwd~~~~~~~~~~~~h-~~~ 485 (512)
.+..-....+.+|+.. .+.++.+... +.. ..+..+|+++++++. ...+.|.++|.++.+....+... ...
T Consensus 242 ~~~~ig~~~v~v~d~~~wkvv~~I~~~---G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~ 317 (369)
T PF02239_consen 242 AIPLIGTDPVSVHDDYAWKVVKTIPTQ---GGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKR 317 (369)
T ss_dssp EEEEEE--TTT-STTTBTSEEEEEE-S---SSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--
T ss_pred ecccccCCccccchhhcCeEEEEEECC---CCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCc
Confidence 2222333344456655 4555555542 233 677889999999998 45689999999999888877533 335
Q ss_pred eEEEEEcCCCCeEEEEE--CCCeEEEecC
Q 010362 486 VIGVTHHPHRNLLATYG--EDCTMKLWKP 512 (512)
Q Consensus 486 v~~v~~~p~~~~l~s~~--~dg~i~iW~~ 512 (512)
+..+.|+++|+.+..+. .+|.|.|||+
T Consensus 318 ~~h~ef~~dG~~v~vS~~~~~~~i~v~D~ 346 (369)
T PF02239_consen 318 VVHMEFNPDGKEVWVSVWDGNGAIVVYDA 346 (369)
T ss_dssp EEEEEE-TTSSEEEEEEE--TTEEEEEET
T ss_pred EeccEECCCCCEEEEEEecCCCEEEEEEC
Confidence 88999999998554443 3347999985
No 205
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.76 E-value=8.6e-15 Score=127.21 Aligned_cols=236 Identities=14% Similarity=0.197 Sum_probs=181.7
Q ss_pred cCceEEEEECCCCCEEEEEeCCCeEEEEEcCCCeeeccccccccceeeccCcceeEEEEcCCCCeEEEEeCCC--eEEEE
Q 010362 213 KSHAECARFSPDGQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQDG--KIKVW 290 (512)
Q Consensus 213 ~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg--~i~vw 290 (512)
...+..+.|+.+...|..|+.|| -++|+.+....... .......|.-+-|+. .++|..+.+. .+++.
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~~--------~~~~~~~IvEmLFSS--SLvaiV~~~qpr~Lkv~ 73 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCFS--------KDTEGVSIVEMLFSS--SLVAIVSIKQPRKLKVV 73 (391)
T ss_pred CcceeeeeeccceeEEEccCCCc-eeEEecCchHHhhc--------ccCCCeEEEEeeccc--ceeEEEecCCCceEEEE
Confidence 44567777999999999999998 56777654332110 111334566666764 4666666543 59999
Q ss_pred EccCCeeeEEeccccccCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeeC---CccceeEEEEcCCCCEEEEEe
Q 010362 291 RIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRG---HSSYVNDAIFTNDGSRVVTAS 367 (512)
Q Consensus 291 d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~ 367 (512)
++..+..+..+. ...+|.++.++. +.|+++-.+ .|+|||+++.+.+.++.. +...+.++.+++.+.+++.-+
T Consensus 74 ~~Kk~~~ICe~~--fpt~IL~VrmNr--~RLvV~Lee-~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~ 148 (391)
T KOG2110|consen 74 HFKKKTTICEIF--FPTSILAVRMNR--KRLVVCLEE-SIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPG 148 (391)
T ss_pred EcccCceEEEEe--cCCceEEEEEcc--ceEEEEEcc-cEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecC
Confidence 999888888875 677899999974 466666644 499999999999887754 344566666666677887643
Q ss_pred --CCCcEEEEeCCCCceeeecCCCCCCCCCCceeEEEEEcCCCCCeEEEEcCCCc-EEEEecC-CeEEEEeeCCcccCCc
Q 010362 368 --SDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSS-IYIMTLQ-GQVVKSFSSGKREGGD 443 (512)
Q Consensus 368 --~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~-i~~~~~~-~~~~~~~~~~~~~~~~ 443 (512)
..|.|.+||..+.+....+. .|.+++.+++|++++ .++++++..|+ |+++.+. |+.+..+..+.. ...
T Consensus 149 s~t~GdV~l~d~~nl~~v~~I~------aH~~~lAalafs~~G-~llATASeKGTVIRVf~v~~G~kl~eFRRG~~-~~~ 220 (391)
T KOG2110|consen 149 STTSGDVVLFDTINLQPVNTIN------AHKGPLAALAFSPDG-TLLATASEKGTVIRVFSVPEGQKLYEFRRGTY-PVS 220 (391)
T ss_pred CCCCceEEEEEcccceeeeEEE------ecCCceeEEEECCCC-CEEEEeccCceEEEEEEcCCccEeeeeeCCce-eeE
Confidence 36889999999888777765 688999999999999 99999999987 7899987 777888877765 667
Q ss_pred EEEEEECCCCCEEEEEeCCCeEEEEEcCC
Q 010362 444 FVAACVSPKGEWIYCVGEDRNLYCFSHQS 472 (512)
Q Consensus 444 ~~~~~~s~~g~~l~~g~~dg~i~iwd~~~ 472 (512)
|.+++|+|++.+|++.+..++|++|.+..
T Consensus 221 IySL~Fs~ds~~L~~sS~TeTVHiFKL~~ 249 (391)
T KOG2110|consen 221 IYSLSFSPDSQFLAASSNTETVHIFKLEK 249 (391)
T ss_pred EEEEEECCCCCeEEEecCCCeEEEEEecc
Confidence 88999999999999999999999998763
No 206
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.75 E-value=1.7e-15 Score=146.07 Aligned_cols=236 Identities=14% Similarity=0.105 Sum_probs=161.1
Q ss_pred CeEEEEEcCCCeeeccccccccceeeccCcceeEEEEcCCCCeEEEEeC---CCeEEEEEccCCeeeEEeccccccCeEE
Q 010362 235 GFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQ---DGKIKVWRIRSGQCLRRLERAHSEGVTS 311 (512)
Q Consensus 235 g~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~---dg~i~vwd~~~~~~~~~~~~~~~~~i~~ 311 (512)
..|.+||.+...... +..+...+.+.+|+|||+.|+..+. +..|.+|++.+|+..... .....+..
T Consensus 179 ~~l~~~d~dg~~~~~---------lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~--~~~~~~~~ 247 (429)
T PRK03629 179 YELRVSDYDGYNQFV---------VHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVA--SFPRHNGA 247 (429)
T ss_pred eeEEEEcCCCCCCEE---------eecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEcc--CCCCCcCC
Confidence 378888876554221 2236678999999999999987653 457999999888643322 23344567
Q ss_pred EEEecCCCEEEEE-eCCC--cEEEEeCCCCceeEEeeCCccceeEEEEcCCCCEEEEEeCC-Cc--EEEEeCCCCceeee
Q 010362 312 LVFSRDGSQILST-SFDS--TARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSD-CT--VKVWDLKSTDCLQT 385 (512)
Q Consensus 312 ~~~~~~~~~l~~~-~~dg--~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-g~--i~iwd~~~~~~~~~ 385 (512)
..|+|||+.|+.. +.+| .|++||+.+++... +..+...+....|+|||+.|+.++.+ |. |.++|+.++... .
T Consensus 248 ~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~-lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~-~ 325 (429)
T PRK03629 248 PAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQ-VTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQ-R 325 (429)
T ss_pred eEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-ccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeE-E
Confidence 8999999988865 4344 58999998876544 44444567889999999988776654 44 444566665432 2
Q ss_pred cCCCCCCCCCCceeEEEEEcCCCCCeEEEEcCC--CcEEEEecCCeEEEEeeCCcccCCcEEEEEECCCCCEEEEEeCCC
Q 010362 386 FKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKT--SSIYIMTLQGQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDR 463 (512)
Q Consensus 386 ~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~--~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~dg 463 (512)
+.. .........|+|++..+++++..+ ..+++||+.+.....+.... ......|+|||++|+.++.++
T Consensus 326 lt~------~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~Lt~~~----~~~~p~~SpDG~~i~~~s~~~ 395 (429)
T PRK03629 326 ITW------EGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLTDTF----LDETPSIAPNGTMVIYSSSQG 395 (429)
T ss_pred eec------CCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeEEeCCCC----CCCCceECCCCCEEEEEEcCC
Confidence 221 122345678999985555555444 35888898866555544321 123578999999999998776
Q ss_pred e---EEEEEcCCCeeEEeccccCCCeEEEEEcCC
Q 010362 464 N---LYCFSHQSGKLEHLMKVHEKDVIGVTHHPH 494 (512)
Q Consensus 464 ~---i~iwd~~~~~~~~~~~~h~~~v~~v~~~p~ 494 (512)
. ++++++ +|.....+.+|.+.+...+|+|-
T Consensus 396 ~~~~l~~~~~-~G~~~~~l~~~~~~~~~p~Wsp~ 428 (429)
T PRK03629 396 MGSVLNLVST-DGRFKARLPATDGQVKFPAWSPY 428 (429)
T ss_pred CceEEEEEEC-CCCCeEECccCCCCcCCcccCCC
Confidence 4 677777 56666777788888999999983
No 207
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.75 E-value=1.2e-17 Score=154.25 Aligned_cols=209 Identities=20% Similarity=0.304 Sum_probs=159.1
Q ss_pred CcCceEEEEECC-CCCEEEEEeCCCeEEEEEcCCCeeeccccccccceeeccCcceeEEEEcC-CCCeEEEEeCCCeEEE
Q 010362 212 TKSHAECARFSP-DGQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSR-DSEMLASGSQDGKIKV 289 (512)
Q Consensus 212 h~~~v~~~~~s~-~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~-~~~~l~s~~~dg~i~v 289 (512)
....|+.+.|.| |...||+++.||.|++|.+..+...... ..+...+.+|...|+++.|+| -.+.|++++.|-+|++
T Consensus 626 Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~-~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~l 704 (1012)
T KOG1445|consen 626 NGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENE-MTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIEL 704 (1012)
T ss_pred cCceeeecccCCCChHHeeecccCceEEEEEeccCCCCccc-CCcceeeecccceEEEEEecchhhhHhhhhhccceeee
Confidence 456799999999 7889999999999999999876554333 356778899999999999999 4578999999999999
Q ss_pred EEccCCeeeEEeccccccCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCce-eEEeeCC-ccceeEEEEcCCCCEEEEEe
Q 010362 290 WRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKL-LKEFRGH-SSYVNDAIFTNDGSRVVTAS 367 (512)
Q Consensus 290 wd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~-~~~~~~~-~~~v~~~~~~~~~~~l~~~~ 367 (512)
||+.+++...++. +|.+.|.+++|+|+|+.+++.+.||+|++|..++++. +..-++. ...--.+.|.-+|+++++.+
T Consensus 705 WDl~~~~~~~~l~-gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~G 783 (1012)
T KOG1445|consen 705 WDLANAKLYSRLV-GHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVG 783 (1012)
T ss_pred eehhhhhhhheec-cCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEec
Confidence 9999999988887 9999999999999999999999999999999987643 3333322 12334577888999988877
Q ss_pred CC----CcEEEEeCCCCc--eeeecCCCCCCCCCCceeEEEEEcCCCCCeEEEEcCCCcEEEEecC
Q 010362 368 SD----CTVKVWDLKSTD--CLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQ 427 (512)
Q Consensus 368 ~d----g~i~iwd~~~~~--~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~~~~~ 427 (512)
.| ..|.+||..+.. .+.+..... ...+.--.+.++..-++++|-.|..|++|.+-
T Consensus 784 fdk~SeRQv~~Y~Aq~l~~~pl~t~~lDv-----aps~LvP~YD~Ds~~lfltGKGD~~v~~yEv~ 844 (1012)
T KOG1445|consen 784 FDKSSERQVQMYDAQTLDLRPLYTQVLDV-----APSPLVPHYDYDSNVLFLTGKGDRFVNMYEVI 844 (1012)
T ss_pred ccccchhhhhhhhhhhccCCcceeeeecc-----cCccccccccCCCceEEEecCCCceEEEEEec
Confidence 65 457888876532 111111000 00111122345565778889999999999876
No 208
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.74 E-value=7.8e-16 Score=140.85 Aligned_cols=283 Identities=17% Similarity=0.191 Sum_probs=206.9
Q ss_pred cCcCceEEEEECCCCCEE-EEEeCCCeEEEEEcCCCeeeccccccccceeeccCcceeEEEEcCCCCeEEEEeCCCeEEE
Q 010362 211 GTKSHAECARFSPDGQFL-VSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQDGKIKV 289 (512)
Q Consensus 211 ~h~~~v~~~~~s~~~~~l-~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~v 289 (512)
+|...-+.+..+|||+|+ |+|..--.|++||+..-.+...-.. ....|.-.-.+.|-..++.-..|.+|-+
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhl--------Dae~V~feiLsDD~SK~v~L~~DR~Ief 120 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHL--------DAEVVDFEILSDDYSKSVFLQNDRTIEF 120 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecc--------cccceeEEEeccchhhheEeecCceeee
Confidence 666777889999999985 5677888999999987654422111 2344555556666556666667888877
Q ss_pred EEccCCeeeEEeccccccCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeeCCccceeEEEEcCCCCEEEEEeCC
Q 010362 290 WRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSD 369 (512)
Q Consensus 290 wd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 369 (512)
..- .|... .+. -+..-.+++++.-..-|++++....|+-++++.|..+..+....+.++++..++...+|++|+.+
T Consensus 121 Hak-~G~hy-~~R--IP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~ 196 (703)
T KOG2321|consen 121 HAK-YGRHY-RTR--IPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTED 196 (703)
T ss_pred hhh-cCeee-eee--cCcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccC
Confidence 653 23221 111 23344566666544445556667789999999999999999888899999999998899999999
Q ss_pred CcEEEEeCCCCceeeecCCCCCCCCCCc-----eeEEEEEcCCCCCeEEEEcCCCcEEEEecCCeEEEEeeCCcccCCcE
Q 010362 370 CTVKVWDLKSTDCLQTFKPPPPLRGGDA-----SVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQVVKSFSSGKREGGDF 444 (512)
Q Consensus 370 g~i~iwd~~~~~~~~~~~~~~~~~~~~~-----~i~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 444 (512)
|.|.+||.++.....++........+.+ .|+++.|..++ -.+++|+.+|.+++||++.........+ ....+|
T Consensus 197 g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~g-L~~aVGts~G~v~iyDLRa~~pl~~kdh-~~e~pi 274 (703)
T KOG2321|consen 197 GVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDG-LHVAVGTSTGSVLIYDLRASKPLLVKDH-GYELPI 274 (703)
T ss_pred ceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCc-eeEEeeccCCcEEEEEcccCCceeeccc-CCccce
Confidence 9999999999887777766555444444 49999998875 8899999999999999995433333322 235678
Q ss_pred EEEEECCC--CCEEEEEeCCCeEEEEEcCCCeeEEeccccCCCeEEEEEcCCCCeEEEEECCCeEEE
Q 010362 445 VAACVSPK--GEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPHRNLLATYGEDCTMKL 509 (512)
Q Consensus 445 ~~~~~s~~--g~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~~~dg~i~i 509 (512)
..+.|-+. ++.|++ .....++|||-.+|+....+.. ...++.+++-|++.++.++-.++.+..
T Consensus 275 ~~l~~~~~~~q~~v~S-~Dk~~~kiWd~~~Gk~~asiEp-t~~lND~C~~p~sGm~f~Ane~~~m~~ 339 (703)
T KOG2321|consen 275 KKLDWQDTDQQNKVVS-MDKRILKIWDECTGKPMASIEP-TSDLNDFCFVPGSGMFFTANESSKMHT 339 (703)
T ss_pred eeecccccCCCceEEe-cchHHhhhcccccCCceeeccc-cCCcCceeeecCCceEEEecCCCccee
Confidence 88888554 334443 4456899999999999988874 455999999999999999988776643
No 209
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.74 E-value=9.3e-15 Score=127.02 Aligned_cols=238 Identities=16% Similarity=0.228 Sum_probs=178.6
Q ss_pred eEEEEECCCCCEEEEEeCC--CeEEEEEcCCCeeeccccccccceeeccCcceeEEEEcCCCCeEEEEeCCCeEEEEEcc
Q 010362 216 AECARFSPDGQFLVSCSFD--GFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWRIR 293 (512)
Q Consensus 216 v~~~~~s~~~~~l~sg~~d--g~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~vwd~~ 293 (512)
|--+-||.. ++|..+.+ ..++++++..+..+..+. ...+|.++.++.+ .|+++-.+ .|.|||+.
T Consensus 49 IvEmLFSSS--LvaiV~~~qpr~Lkv~~~Kk~~~ICe~~---------fpt~IL~VrmNr~--RLvV~Lee-~IyIydI~ 114 (391)
T KOG2110|consen 49 IVEMLFSSS--LVAIVSIKQPRKLKVVHFKKKTTICEIF---------FPTSILAVRMNRK--RLVVCLEE-SIYIYDIK 114 (391)
T ss_pred EEEeecccc--eeEEEecCCCceEEEEEcccCceEEEEe---------cCCceEEEEEccc--eEEEEEcc-cEEEEecc
Confidence 333445543 55555543 458999998888777665 4578999999754 67777655 49999999
Q ss_pred CCeeeEEeccc--cccCeEEEEEecCCCEEEEEe--CCCcEEEEeCCCCceeEEeeCCccceeEEEEcCCCCEEEEEeCC
Q 010362 294 SGQCLRRLERA--HSEGVTSLVFSRDGSQILSTS--FDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSD 369 (512)
Q Consensus 294 ~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~--~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 369 (512)
+.+.+.++... +...+.++++++.+.+++.-+ ..|.|.+||..+-+.+..+..|.+.+.+++|+++|.+|+|++..
T Consensus 115 ~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeK 194 (391)
T KOG2110|consen 115 DMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEK 194 (391)
T ss_pred cceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccC
Confidence 99999888744 455677777777777888543 36899999999999999999999999999999999999999999
Q ss_pred Cc-EEEEeCCCCceeeecCCCCCCCCCCceeEEEEEcCCCCCeEEEEcCCCcEEEEecCCeEEEEeeCC-----------
Q 010362 370 CT-VKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQVVKSFSSG----------- 437 (512)
Q Consensus 370 g~-i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~----------- 437 (512)
|+ ||||.+.+|+.+..|.... ....|.+++|+|+. .++.+.+..++|+++.+...........
T Consensus 195 GTVIRVf~v~~G~kl~eFRRG~----~~~~IySL~Fs~ds-~~L~~sS~TeTVHiFKL~~~~~~~~~~p~~~~~~~~~~s 269 (391)
T KOG2110|consen 195 GTVIRVFSVPEGQKLYEFRRGT----YPVSIYSLSFSPDS-QFLAASSNTETVHIFKLEKVSNNPPESPTAGTSWFGKVS 269 (391)
T ss_pred ceEEEEEEcCCccEeeeeeCCc----eeeEEEEEEECCCC-CeEEEecCCCeEEEEEecccccCCCCCCCCCCcccchhh
Confidence 98 6999999999988887543 25689999999998 7999999999999998863221100000
Q ss_pred ------------------------c-ccCCcEEEEEE--CCCCCEEEEEeCCCeEEEEEcCC
Q 010362 438 ------------------------K-REGGDFVAACV--SPKGEWIYCVGEDRNLYCFSHQS 472 (512)
Q Consensus 438 ------------------------~-~~~~~~~~~~~--s~~g~~l~~g~~dg~i~iwd~~~ 472 (512)
. ...+.-..+.+ .+....+.+++.||.++.|.+..
T Consensus 270 k~~~sylps~V~~~~~~~R~FAt~~l~~s~~~~~~~l~~~~~~~~v~vas~dG~~y~y~l~~ 331 (391)
T KOG2110|consen 270 KAATSYLPSQVSSVLDQSRKFATAKLPESGRKNICSLSSIQKIPRVLVASYDGHLYSYRLPP 331 (391)
T ss_pred hhhhhhcchhhhhhhhhccceeEEEccCCCccceEEeeccCCCCEEEEEEcCCeEEEEEcCC
Confidence 0 00011122233 35778999999999999998753
No 210
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.74 E-value=1.4e-15 Score=129.54 Aligned_cols=229 Identities=14% Similarity=0.170 Sum_probs=174.6
Q ss_pred cCcceeEEEEcCCCCeEEEEeCCCeEEEEEccCCe---eeEEeccccccCeEEEEEecCCCEEEEEeCCCcEEEEeCCCC
Q 010362 262 HDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQ---CLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSG 338 (512)
Q Consensus 262 h~~~v~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~---~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~i~d~~~~ 338 (512)
-..+|+|.+|++|+..+|.+.....|.||.....+ ...++. .|...|+.++|+|..+.|++++.|..-++|....+
T Consensus 9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls-~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~ 87 (361)
T KOG1523|consen 9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLS-EHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSG 87 (361)
T ss_pred ccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehh-hhCcceeEEeecCCCCceeEccCCCCccccccCCC
Confidence 45789999999999999999999999999987655 455565 79999999999999999999999999999998433
Q ss_pred ---ceeEEeeCCccceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeecCCCCCCCCCCceeEEEEEcCCCCCeEEEE
Q 010362 339 ---KLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVC 415 (512)
Q Consensus 339 ---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~ 415 (512)
++...+..++...+++.|+|.++.|++|+....|.||-++....-..-+.. ...+.+.|.++.|+|++ -++++|
T Consensus 88 ~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhi--kkPirStv~sldWhpnn-VLlaaG 164 (361)
T KOG1523|consen 88 GTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHI--KKPIRSTVTSLDWHPNN-VLLAAG 164 (361)
T ss_pred CeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhh--CCccccceeeeeccCCc-ceeccc
Confidence 445566678899999999999999999999999999987654322111110 11245789999999988 899999
Q ss_pred cCCCcEEEEecCCeEEE----------------EeeCCcccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCe-eEEe
Q 010362 416 NKTSSIYIMTLQGQVVK----------------SFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGK-LEHL 478 (512)
Q Consensus 416 ~~~~~i~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~-~~~~ 478 (512)
+.|+..+++..--+.+. ........++.+..+.|+|+|+.|+-.+.|+.+.+-|..... ....
T Consensus 165 s~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~~~v~~ 244 (361)
T KOG1523|consen 165 STDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPSERVQS 244 (361)
T ss_pred ccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCchhccc
Confidence 99999998875311110 011111346778999999999999999999999999987654 2333
Q ss_pred ccccCCCeEEEEEcCC
Q 010362 479 MKVHEKDVIGVTHHPH 494 (512)
Q Consensus 479 ~~~h~~~v~~v~~~p~ 494 (512)
.....-+..++.|-.+
T Consensus 245 ~~~~~lP~ls~~~ise 260 (361)
T KOG1523|consen 245 VATAQLPLLSVSWISE 260 (361)
T ss_pred hhhccCCceeeEeecC
Confidence 3323356666666543
No 211
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.73 E-value=9e-17 Score=146.73 Aligned_cols=183 Identities=19% Similarity=0.337 Sum_probs=148.5
Q ss_pred ccceEEEecCcCceEEEEECCCCCEEEEEeCCCeEEEEEcCCCeeecccc--ccccceeeccCcceeEEEEcCCCCeEEE
Q 010362 203 TLSHTIKFGTKSHAECARFSPDGQFLVSCSFDGFIEVWDYLSGKLKKDLQ--YQADETFMMHDETVLCIEFSRDSEMLAS 280 (512)
Q Consensus 203 ~~~~~~~~~h~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~--~~~~~~~~~h~~~v~~l~~s~~~~~l~s 280 (512)
.+..+++ +|.++|.|++.++++..+++|+.||+|+.|++....-..... ......+.||.+.|+.+++|+....|++
T Consensus 335 epi~tfr-aH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Lls 413 (577)
T KOG0642|consen 335 EPILTFR-AHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLS 413 (577)
T ss_pred eeeEEEe-cccCceEEEEecCCceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceee
Confidence 4455666 999999999999999999999999999999775221111100 1223578899999999999999999999
Q ss_pred EeCCCeEEEEEccCCeeeEEec---------------------------------------------------cccccCe
Q 010362 281 GSQDGKIKVWRIRSGQCLRRLE---------------------------------------------------RAHSEGV 309 (512)
Q Consensus 281 ~~~dg~i~vwd~~~~~~~~~~~---------------------------------------------------~~~~~~i 309 (512)
|+.||+++.|+...... ..+. ......+
T Consensus 414 cs~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~i 492 (577)
T KOG0642|consen 414 CSSDGTVRLWEPTEESP-CTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQI 492 (577)
T ss_pred ecCCceEEeeccCCcCc-cccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCcc
Confidence 99999999998754433 1110 0011346
Q ss_pred EEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeeCCccceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeecC
Q 010362 310 TSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFK 387 (512)
Q Consensus 310 ~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 387 (512)
..+.++|++...+++..|+.|+++|..+++++.....|...++++++.|+|.+|++++.||.+++|.+....++....
T Consensus 493 n~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~es~ 570 (577)
T KOG0642|consen 493 NKVVSHPTADITFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLEST 570 (577)
T ss_pred ceEEecCCCCeeEecccCCceecccccccccchheeeccceecceeecCCCceEEeecCCceeehhhccchheeeccc
Confidence 778889999999999999999999999999999999999999999999999999999999999999998777665544
No 212
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.72 E-value=4.5e-15 Score=128.48 Aligned_cols=263 Identities=16% Similarity=0.162 Sum_probs=165.9
Q ss_pred ccceEEEecCcCceEEEEECCC-CCEEEEEeCCCeEEEEEcCCCeeecc----ccccccc--eeeccCcceeEEEEcCCC
Q 010362 203 TLSHTIKFGTKSHAECARFSPD-GQFLVSCSFDGFIEVWDYLSGKLKKD----LQYQADE--TFMMHDETVLCIEFSRDS 275 (512)
Q Consensus 203 ~~~~~~~~~h~~~v~~~~~s~~-~~~l~sg~~dg~i~iwd~~~~~~~~~----~~~~~~~--~~~~h~~~v~~l~~s~~~ 275 (512)
+....++......|+|++|-|. +.-|++|+. +-|.||..+....... ......+ ...+| .+|++|.|++||
T Consensus 130 t~pt~Lks~sQrnvtclawRPlsaselavgCr-~gIciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dg 207 (445)
T KOG2139|consen 130 TCPTKLKSVSQRNVTCLAWRPLSASELAVGCR-AGICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDG 207 (445)
T ss_pred CCCceecchhhcceeEEEeccCCcceeeeeec-ceeEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCC
Confidence 3344455456678999999995 457788875 5599998653221111 0111111 22334 789999999999
Q ss_pred CeEEEEeC-CCeEEEEEccCCeeeEEeccccccCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeeCCccceeEE
Q 010362 276 EMLASGSQ-DGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDA 354 (512)
Q Consensus 276 ~~l~s~~~-dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~ 354 (512)
..+++++. |..|.|||.+++..+.... ...+.++-+.|+||+.+|++++.|+..++|...............+.|...
T Consensus 208 t~l~tAS~gsssi~iWdpdtg~~~pL~~-~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqta 286 (445)
T KOG2139|consen 208 TILVTASFGSSSIMIWDPDTGQKIPLIP-KGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTA 286 (445)
T ss_pred CEEeecccCcceEEEEcCCCCCcccccc-cCCCceeeEEEcCCCCEEEEecccceeeeehhcccceecceeccCCceeee
Confidence 99999986 5789999999998766553 456789999999999999999999999999654433333333345589999
Q ss_pred EEcCCCCEEEEEeCCCcEEEEeCCCCceeeecC---------CCC---------CCCCCCceeEEEEEcCCCCCeEEEEc
Q 010362 355 IFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFK---------PPP---------PLRGGDASVNSVHLFPKNPDHIVVCN 416 (512)
Q Consensus 355 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~---------~~~---------~~~~~~~~i~~~~~~~~~~~~l~~~~ 416 (512)
+|+|+|.+|+.+.. |.-++|.+.....-..+. ... ...-..+++.+++|.|.+ .++++..
T Consensus 287 cWspcGsfLLf~~s-gsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsG-eyLav~f 364 (445)
T KOG2139|consen 287 CWSPCGSFLLFACS-GSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSG-EYLAVIF 364 (445)
T ss_pred eecCCCCEEEEEEc-CCceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCC-CEEEEEE
Confidence 99999998765543 334455443211100000 000 001124678899999998 6666655
Q ss_pred CCC--------cEEEEecCCeEEEEee-CCcccCCcEEEEEECC---CCCEEEEEeCCCeEEEEEc
Q 010362 417 KTS--------SIYIMTLQGQVVKSFS-SGKREGGDFVAACVSP---KGEWIYCVGEDRNLYCFSH 470 (512)
Q Consensus 417 ~~~--------~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~s~---~g~~l~~g~~dg~i~iwd~ 470 (512)
..+ .|..||.+......+. .+...+.....++|+| +|.+|..+=..|.+.-|++
T Consensus 365 Kg~~~v~~~k~~i~~fdtr~sp~vels~cg~i~ge~P~~IsF~pl~n~g~lLsiaWsTGriq~ypl 430 (445)
T KOG2139|consen 365 KGQSFVLLCKLHISRFDTRKSPPVELSYCGMIGGEYPAYISFGPLKNEGRLLSIAWSTGRIQRYPL 430 (445)
T ss_pred cCCchhhhhhhhhhhhcccccCceEEEecccccCCCCceEEeeecccCCcEEEEEeccCceEeeee
Confidence 443 3667777744333332 1211122234455554 5666666667777766654
No 213
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.71 E-value=2.1e-14 Score=122.89 Aligned_cols=278 Identities=12% Similarity=0.132 Sum_probs=188.9
Q ss_pred cCceEEEEECCCCCEEEE-EeCCCeEEEEEcCCCeeeccccccccceeeccCcceeEEEEcCCCC-eEEEEeCCCeEEEE
Q 010362 213 KSHAECARFSPDGQFLVS-CSFDGFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSE-MLASGSQDGKIKVW 290 (512)
Q Consensus 213 ~~~v~~~~~s~~~~~l~s-g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~-~l~s~~~dg~i~vw 290 (512)
-+.|..+.|..|..+++. ...|+.|.+|++...+-...+.. ...++.+++|||||+ +|.+...|-.|.+|
T Consensus 48 ldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIde--------g~agls~~~WSPdgrhiL~tseF~lriTVW 119 (447)
T KOG4497|consen 48 LDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDE--------GQAGLSSISWSPDGRHILLTSEFDLRITVW 119 (447)
T ss_pred HHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEecc--------CCCcceeeeECCCcceEeeeecceeEEEEE
Confidence 456778899988877655 46889999999987776554443 668899999999995 55566678899999
Q ss_pred EccCCeeeEEeccccccCeEEEEEecCCCEEEEEeCC------------------------------------CcEEEEe
Q 010362 291 RIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFD------------------------------------STARIHG 334 (512)
Q Consensus 291 d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d------------------------------------g~v~i~d 334 (512)
.+.+.+....- ..+..+..++|+|||++.+.++.- ..+.+||
T Consensus 120 SL~t~~~~~~~--~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd 197 (447)
T KOG4497|consen 120 SLNTQKGYLLP--HPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWD 197 (447)
T ss_pred EeccceeEEec--ccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEec
Confidence 99887754432 234556889999999887766532 1233343
Q ss_pred CCCCceeEEeeCCccceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeee-----------------------------
Q 010362 335 LKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQT----------------------------- 385 (512)
Q Consensus 335 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~----------------------------- 385 (512)
.--.-.+..+. -.-.+..+.|+|.+++++.|+.|+.+++.+--+-+....
T Consensus 198 ~~Leykv~aYe-~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~c 276 (447)
T KOG4497|consen 198 NVLEYKVYAYE-RGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHC 276 (447)
T ss_pred chhhheeeeee-eccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccc
Confidence 21111111111 123588899999999999999999998865432221111
Q ss_pred -------------------------------cCCCCCCCCCCceeEEEEEcCCCCCeEEEEcCC--CcEEEEecCCeEEE
Q 010362 386 -------------------------------FKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKT--SSIYIMTLQGQVVK 432 (512)
Q Consensus 386 -------------------------------~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~--~~i~~~~~~~~~~~ 432 (512)
++++.........+.-++|+++. .++++-... ..+.+||++...+.
T Consensus 277 Lsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds-~y~aTrnd~~PnalW~Wdlq~l~l~ 355 (447)
T KOG4497|consen 277 LSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDS-TYAATRNDKYPNALWLWDLQNLKLH 355 (447)
T ss_pred cccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCc-eEEeeecCCCCceEEEEechhhhhh
Confidence 11111111223345667788775 455444332 56899999876555
Q ss_pred EeeCCcccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCeeEEeccccCCCeEEEEEcCCCCeEEEEECCCe
Q 010362 433 SFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPHRNLLATYGEDCT 506 (512)
Q Consensus 433 ~~~~~~~~~~~~~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~~~dg~ 506 (512)
..... ..+|....|+|....++.+.....+++|.......+. .....-.|..+.|+-+|..++-++.|..
T Consensus 356 avLiQ---k~piraf~WdP~~prL~vctg~srLY~W~psg~~~V~-vP~~GF~i~~l~W~~~g~~i~l~~kDaf 425 (447)
T KOG4497|consen 356 AVLIQ---KHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSGPRVVG-VPKKGFNIQKLQWLQPGEFIVLCGKDAF 425 (447)
T ss_pred hhhhh---ccceeEEEeCCCCceEEEEcCCceEEEEcCCCceEEe-cCCCCceeeeEEecCCCcEEEEEcCCce
Confidence 44432 3569999999999999988888899999876544433 3334467999999999999999998864
No 214
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.70 E-value=8e-17 Score=143.54 Aligned_cols=264 Identities=16% Similarity=0.195 Sum_probs=209.1
Q ss_pred eEEEEECCCCCEEEEEeCCCeEEEEEcCCCeeeccccccccceeeccCcceeEEEEcCCCCeEEEEeCCCeEEEEEccCC
Q 010362 216 AECARFSPDGQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSG 295 (512)
Q Consensus 216 v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~vwd~~~~ 295 (512)
...+.++.+|++++.|+..|.|-.+|+.++.+...+. -...|.++.|-.+.+++|++- ...+.||| ..|
T Consensus 132 PY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~---------v~Etv~Dv~~LHneq~~AVAQ-K~y~yvYD-~~G 200 (545)
T KOG1272|consen 132 PYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEIN---------VMETVRDVTFLHNEQFFAVAQ-KKYVYVYD-NNG 200 (545)
T ss_pred CeeeeecCCccEEEecCCccceeeeecccceeeeeee---------hhhhhhhhhhhcchHHHHhhh-hceEEEec-CCC
Confidence 4568899999999999999999999999999887765 356799999999988888875 56899999 667
Q ss_pred eeeEEeccccccCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeeCCccceeEEEEcCCCCEEEEEeCCCcEEEE
Q 010362 296 QCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVW 375 (512)
Q Consensus 296 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw 375 (512)
..+..+. ....|..+.|.|..-+|++++..|.++.-|+.+|+.+..+....+.+..++-+|-+..+-+|..+|+|.+|
T Consensus 201 tElHClk--~~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlW 278 (545)
T KOG1272|consen 201 TELHCLK--RHIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLW 278 (545)
T ss_pred cEEeehh--hcCchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEec
Confidence 7777775 45679999999998889999999999999999999999998888889999999998899999999999999
Q ss_pred eCCCCceeeecCCCCCCCCCCceeEEEEEcCCCCCeEEEEcCCCcEEEEecCCeE-EEEeeCCcccCCcEEEEEECCCCC
Q 010362 376 DLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQV-VKSFSSGKREGGDFVAACVSPKGE 454 (512)
Q Consensus 376 d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~s~~g~ 454 (512)
...+.+++..+. +|.++|.++++.+.+ .++++++.|..+.+||++.-. +..+.. ..+...+++|..|-
T Consensus 279 SP~skePLvKiL------cH~g~V~siAv~~~G-~YMaTtG~Dr~~kIWDlR~~~ql~t~~t----p~~a~~ls~Sqkgl 347 (545)
T KOG1272|consen 279 SPNSKEPLVKIL------CHRGPVSSIAVDRGG-RYMATTGLDRKVKIWDLRNFYQLHTYRT----PHPASNLSLSQKGL 347 (545)
T ss_pred CCCCcchHHHHH------hcCCCcceEEECCCC-cEEeecccccceeEeeeccccccceeec----CCCccccccccccc
Confidence 998877665554 688999999999988 999999999999999999533 333322 12355677776664
Q ss_pred EEEEEeCCCeEEEEEc-CCC--eeEEecccc--CCCeEEEEEcCCCCeEEEEECCC
Q 010362 455 WIYCVGEDRNLYCFSH-QSG--KLEHLMKVH--EKDVIGVTHHPHRNLLATYGEDC 505 (512)
Q Consensus 455 ~l~~g~~dg~i~iwd~-~~~--~~~~~~~~h--~~~v~~v~~~p~~~~l~s~~~dg 505 (512)
++.+....|.||.- -.+ .....+-.| .++|..+.|.|-...|-.|-..|
T Consensus 348 --LA~~~G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G 401 (545)
T KOG1272|consen 348 --LALSYGDHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGG 401 (545)
T ss_pred --eeeecCCeeeeehhhhcCCCCCCcchhhhccCcccccceeccHHHeeeccccCC
Confidence 34444567899942 221 222222223 35899999999766665554444
No 215
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.70 E-value=1.4e-14 Score=140.43 Aligned_cols=235 Identities=17% Similarity=0.176 Sum_probs=158.9
Q ss_pred CeEEEEEcCCCeeeccccccccceeeccCcceeEEEEcCCCCeEEEEeCC---CeEEEEEccCCeeeEEeccccccCeEE
Q 010362 235 GFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQD---GKIKVWRIRSGQCLRRLERAHSEGVTS 311 (512)
Q Consensus 235 g~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d---g~i~vwd~~~~~~~~~~~~~~~~~i~~ 311 (512)
..|.+||....... .+..+...+.+.+|+|||+.|+.++.+ ..|.+||+.+++..... ...+...+
T Consensus 184 ~~l~i~D~~g~~~~---------~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~--~~~g~~~~ 252 (433)
T PRK04922 184 YALQVADSDGYNPQ---------TILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVA--SFRGINGA 252 (433)
T ss_pred EEEEEECCCCCCce---------EeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEec--cCCCCccC
Confidence 46889997544322 233367789999999999999988743 46999999888754322 33445568
Q ss_pred EEEecCCCEEEE-EeCCC--cEEEEeCCCCceeEEeeCCccceeEEEEcCCCCEEEEEeC-CCc--EEEEeCCCCceeee
Q 010362 312 LVFSRDGSQILS-TSFDS--TARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASS-DCT--VKVWDLKSTDCLQT 385 (512)
Q Consensus 312 ~~~~~~~~~l~~-~~~dg--~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~--i~iwd~~~~~~~~~ 385 (512)
..|+|||+.++. .+.+| .|++||+.+++. ..+..+.......+|+|||+.++.++. +|. |.++|+.+++...
T Consensus 253 ~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~- 330 (433)
T PRK04922 253 PSFSPDGRRLALTLSRDGNPEIYVMDLGSRQL-TRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAER- 330 (433)
T ss_pred ceECCCCCEEEEEEeCCCCceEEEEECCCCCe-EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEE-
Confidence 899999998764 45555 599999987764 445555555677899999998887664 444 6666776655322
Q ss_pred cCCCCCCCCCCceeEEEEEcCCCCCeEEEEcCCC--cEEEEecCCeEEEEeeCCcccCCcEEEEEECCCCCEEEEEeCC-
Q 010362 386 FKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTS--SIYIMTLQGQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGED- 462 (512)
Q Consensus 386 ~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~--~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d- 462 (512)
+.. .........|+|++..++++...++ .|.+||+.+.....+.... ......|+|||++++..+.+
T Consensus 331 lt~------~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~~Lt~~~----~~~~p~~spdG~~i~~~s~~~ 400 (433)
T PRK04922 331 LTF------QGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVRTLTPGS----LDESPSFAPNGSMVLYATREG 400 (433)
T ss_pred eec------CCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeEECCCCC----CCCCceECCCCCEEEEEEecC
Confidence 211 1123346799999854444443333 5899998865555444321 23356899999998877753
Q ss_pred --CeEEEEEcCCCeeEEeccccCCCeEEEEEcC
Q 010362 463 --RNLYCFSHQSGKLEHLMKVHEKDVIGVTHHP 493 (512)
Q Consensus 463 --g~i~iwd~~~~~~~~~~~~h~~~v~~v~~~p 493 (512)
+.+++++.. +.....+..+.+.+...+|+|
T Consensus 401 g~~~L~~~~~~-g~~~~~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 401 GRGVLAAVSTD-GRVRQRLVSADGEVREPAWSP 432 (433)
T ss_pred CceEEEEEECC-CCceEEcccCCCCCCCCccCC
Confidence 468888885 445566666667788888987
No 216
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.70 E-value=8.4e-15 Score=124.83 Aligned_cols=235 Identities=14% Similarity=0.226 Sum_probs=159.4
Q ss_pred ceeEEEEcCCCCeEEEEeCCCeEEEEEccCCeeeEEeccccccCeEEEEEecCCCEEE-EEeCC------CcEEEEeCCC
Q 010362 265 TVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQIL-STSFD------STARIHGLKS 337 (512)
Q Consensus 265 ~v~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~d------g~v~i~d~~~ 337 (512)
....++|+.|...+++|..+| .+||+.+.-+...+-. .+.+.+.-+...--.++++ +|+.+ +.|.|||-..
T Consensus 7 ~~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r~-~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD~k 84 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQ-FIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDDLK 84 (346)
T ss_pred ceeEEEEccCCceEEEEecCc-eEEEecCchhhhhhhc-cccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEeccc
Confidence 455699999999999998666 8999987533221111 1122221111111234554 34333 4799999767
Q ss_pred CceeEEeeCCccceeEEEEcCCCCEEEEEeCCCcEEEEeCC-CCceeeecCCCCCCCCCCceeEEEEEcCCCCCe-EEE-
Q 010362 338 GKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLK-STDCLQTFKPPPPLRGGDASVNSVHLFPKNPDH-IVV- 414 (512)
Q Consensus 338 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-l~~- 414 (512)
.+++.++. ..++|.++.+.++ .+++.- .+.|.+|... +.+.+..+.......+ ..+ ..|..... ++.
T Consensus 85 ~~~i~el~-f~~~I~~V~l~r~--riVvvl-~~~I~VytF~~n~k~l~~~et~~NPkG----lC~--~~~~~~k~~LafP 154 (346)
T KOG2111|consen 85 ERCIIELS-FNSEIKAVKLRRD--RIVVVL-ENKIYVYTFPDNPKLLHVIETRSNPKG----LCS--LCPTSNKSLLAFP 154 (346)
T ss_pred CcEEEEEE-eccceeeEEEcCC--eEEEEe-cCeEEEEEcCCChhheeeeecccCCCc----eEe--ecCCCCceEEEcC
Confidence 77777776 5678999999876 455544 5689999987 4455555443322111 222 33333232 322
Q ss_pred EcCCCcEEEEecCCeEEEEeeCCcccCCcEEEEEECCCCCEEEEEeCCCe-EEEEEcCCCeeEEecccc--CCCeEEEEE
Q 010362 415 CNKTSSIYIMTLQGQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRN-LYCFSHQSGKLEHLMKVH--EKDVIGVTH 491 (512)
Q Consensus 415 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~dg~-i~iwd~~~~~~~~~~~~h--~~~v~~v~~ 491 (512)
|..-|.+.+.|+.............|...|.+++.+.+|..+|+++..|+ |+|||..+|+++..+... ...|.+++|
T Consensus 155 g~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaF 234 (346)
T KOG2111|consen 155 GFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAF 234 (346)
T ss_pred CCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEe
Confidence 45679999999985444211222345678999999999999999999997 899999999999988643 357999999
Q ss_pred cCCCCeEEEEECCCeEEEec
Q 010362 492 HPHRNLLATYGEDCTMKLWK 511 (512)
Q Consensus 492 ~p~~~~l~s~~~dg~i~iW~ 511 (512)
||+..+||.+|+-|+|.|+.
T Consensus 235 Sp~~s~LavsSdKgTlHiF~ 254 (346)
T KOG2111|consen 235 SPNSSWLAVSSDKGTLHIFS 254 (346)
T ss_pred CCCccEEEEEcCCCeEEEEE
Confidence 99999999999999999984
No 217
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.70 E-value=6.7e-15 Score=146.12 Aligned_cols=247 Identities=17% Similarity=0.263 Sum_probs=175.7
Q ss_pred eeeccCcceeEEEEcCCC-CeEEEEeCCCeEEEEEccCC-------eeeEEeccccccCeEEEEEecCCCEEEEEeCCCc
Q 010362 258 TFMMHDETVLCIEFSRDS-EMLASGSQDGKIKVWRIRSG-------QCLRRLERAHSEGVTSLVFSRDGSQILSTSFDST 329 (512)
Q Consensus 258 ~~~~h~~~v~~l~~s~~~-~~l~s~~~dg~i~vwd~~~~-------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~ 329 (512)
.+..|...|..++.++.. .++++||.||+|++||...- +...++. .....+.++.+.++++.+|+++.||.
T Consensus 1043 hL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys-~~~sr~~~vt~~~~~~~~Av~t~DG~ 1121 (1431)
T KOG1240|consen 1043 HLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYS-PEGSRVEKVTMCGNGDQFAVSTKDGS 1121 (1431)
T ss_pred hhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEe-ccCCceEEEEeccCCCeEEEEcCCCe
Confidence 455688899999988865 99999999999999998632 1222332 35678999999999999999999999
Q ss_pred EEEEeCCCC--c-----eeEEeeCC-ccceeEE-EEcC-CCC-EEEEEeCCCcEEEEeCCCCceeeecCCCCCCCCCCce
Q 010362 330 ARIHGLKSG--K-----LLKEFRGH-SSYVNDA-IFTN-DGS-RVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDAS 398 (512)
Q Consensus 330 v~i~d~~~~--~-----~~~~~~~~-~~~v~~~-~~~~-~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 398 (512)
|.+.++... + ..+....+ .+.+.++ +|.. .+. .++.+...+.|..||+++......++... ..+.
T Consensus 1122 v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~----~hG~ 1197 (1431)
T KOG1240|consen 1122 VRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQL----RHGL 1197 (1431)
T ss_pred EEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCc----cccc
Confidence 999988652 1 11111222 2333333 3433 233 67888888999999999987777766543 4678
Q ss_pred eEEEEEcCCCCCeEEEEcCCCcEEEEecC-CeEEEEeeCCcccCCcEEEEEECC---CCCEEEEEe--CCCeEEEEEcCC
Q 010362 399 VNSVHLFPKNPDHIVVCNKTSSIYIMTLQ-GQVVKSFSSGKREGGDFVAACVSP---KGEWIYCVG--EDRNLYCFSHQS 472 (512)
Q Consensus 399 i~~~~~~~~~~~~l~~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~s~---~g~~l~~g~--~dg~i~iwd~~~ 472 (512)
|++++.+|.+ ..+++|+..|.+.+||++ +..+..+.... ..++..++..| .....++++ ..+.|.+|++.+
T Consensus 1198 vTSi~idp~~-~WlviGts~G~l~lWDLRF~~~i~sw~~P~--~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~ 1274 (1431)
T KOG1240|consen 1198 VTSIVIDPWC-NWLVIGTSRGQLVLWDLRFRVPILSWEHPA--RAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMET 1274 (1431)
T ss_pred eeEEEecCCc-eEEEEecCCceEEEEEeecCceeecccCcc--cCCcceEEeeccCCCCceEEEecccCCCceeeeeccc
Confidence 9999999988 699999999999999999 55555555443 35566666544 334555544 578899999999
Q ss_pred CeeEEecccc-------------------CCCeEEEEEcCCCCeEEEEECCCeEEEecC
Q 010362 473 GKLEHLMKVH-------------------EKDVIGVTHHPHRNLLATYGEDCTMKLWKP 512 (512)
Q Consensus 473 ~~~~~~~~~h-------------------~~~v~~v~~~p~~~~l~s~~~dg~i~iW~~ 512 (512)
|....++... .-......+...+.++.+|+.|..|+.||+
T Consensus 1275 g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~ 1333 (1431)
T KOG1240|consen 1275 GLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDP 1333 (1431)
T ss_pred CcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccC
Confidence 8766554322 111222333334568899999999999996
No 218
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.70 E-value=1.9e-15 Score=146.27 Aligned_cols=219 Identities=22% Similarity=0.238 Sum_probs=146.9
Q ss_pred eEEEecCcCceEEEEECCCCCEEEEEeCC---CeEEEEEcCCCeeeccccccccceeeccCcceeEEEEcCCCCeEEEEe
Q 010362 206 HTIKFGTKSHAECARFSPDGQFLVSCSFD---GFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGS 282 (512)
Q Consensus 206 ~~~~~~h~~~v~~~~~s~~~~~l~sg~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~ 282 (512)
+.+. .|...+.+.+|||||+.|+.++.+ ..|++||+.+++..... .+.+| ...++|+|||+.|+.++
T Consensus 197 ~~lt-~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~------~~~g~---~~~~~wSPDG~~La~~~ 266 (429)
T PRK01742 197 FIVN-RSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVA------SFRGH---NGAPAFSPDGSRLAFAS 266 (429)
T ss_pred eEec-cCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEe------cCCCc---cCceeECCCCCEEEEEE
Confidence 3443 678889999999999999988754 37999999877532211 11223 34689999999888765
Q ss_pred -CCCeEEEE--EccCCeeeEEeccccccCeEEEEEecCCCEEEEEe-CCCcEEEEeCCCC-ceeEEeeCCccceeEEEEc
Q 010362 283 -QDGKIKVW--RIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTS-FDSTARIHGLKSG-KLLKEFRGHSSYVNDAIFT 357 (512)
Q Consensus 283 -~dg~i~vw--d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~v~i~d~~~~-~~~~~~~~~~~~v~~~~~~ 357 (512)
.+|.+.|| |+.++.. ..+. .+...+....|+|||+.|+.++ .+|...+|++... .....+ .+.. .+..|+
T Consensus 267 ~~~g~~~Iy~~d~~~~~~-~~lt-~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~~~--~~~~~S 341 (429)
T PRK01742 267 SKDGVLNIYVMGANGGTP-SQLT-SGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV-GGRG--YSAQIS 341 (429)
T ss_pred ecCCcEEEEEEECCCCCe-Eeec-cCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-cCCC--CCccCC
Confidence 67866555 6555553 4444 4566788999999999877665 5677888876432 222222 3333 457899
Q ss_pred CCCCEEEEEeCCCcEEEEeCCCCceeeecCCCCCCCCCCceeEEEEEcCCCCCeEEEEcCCCcEEEEe---cCCeEEEEe
Q 010362 358 NDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMT---LQGQVVKSF 434 (512)
Q Consensus 358 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~~~---~~~~~~~~~ 434 (512)
|+|+.++.++.++ +.+||+.++........ . ...++.|+|++ ..++.++.++...+|. .++.....+
T Consensus 342 pDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~-~-------~~~~~~~sPdG-~~i~~~s~~g~~~~l~~~~~~G~~~~~l 411 (429)
T PRK01742 342 ADGKTLVMINGDN-VVKQDLTSGSTEVLSST-F-------LDESPSISPNG-IMIIYSSTQGLGKVLQLVSADGRFKARL 411 (429)
T ss_pred CCCCEEEEEcCCC-EEEEECCCCCeEEecCC-C-------CCCCceECCCC-CEEEEEEcCCCceEEEEEECCCCceEEc
Confidence 9999998887765 66699988765432211 1 12456799988 6777777777766655 456666666
Q ss_pred eCCcccCCcEEEEEECCC
Q 010362 435 SSGKREGGDFVAACVSPK 452 (512)
Q Consensus 435 ~~~~~~~~~~~~~~~s~~ 452 (512)
..+ .+.+...+|+|-
T Consensus 412 ~~~---~g~~~~p~wsp~ 426 (429)
T PRK01742 412 PGS---DGQVKFPAWSPY 426 (429)
T ss_pred cCC---CCCCCCcccCCC
Confidence 432 344667788874
No 219
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.70 E-value=2.4e-14 Score=139.07 Aligned_cols=235 Identities=16% Similarity=0.163 Sum_probs=160.2
Q ss_pred CeEEEEEcCCCeeeccccccccceeeccCcceeEEEEcCCCCeEEEEeC---CCeEEEEEccCCeeeEEeccccccCeEE
Q 010362 235 GFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQ---DGKIKVWRIRSGQCLRRLERAHSEGVTS 311 (512)
Q Consensus 235 g~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~---dg~i~vwd~~~~~~~~~~~~~~~~~i~~ 311 (512)
..|.+||.+..... .+..|...+.+.+|+|||+.|+..+. +..|.+||+.+++... +. .+.+.+.+
T Consensus 182 ~~l~~~d~dg~~~~---------~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~-l~-~~~g~~~~ 250 (435)
T PRK05137 182 KRLAIMDQDGANVR---------YLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQREL-VG-NFPGMTFA 250 (435)
T ss_pred eEEEEECCCCCCcE---------EEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEE-ee-cCCCcccC
Confidence 47888887544322 23347789999999999999988764 4689999999887533 33 45667788
Q ss_pred EEEecCCCEEE-EEeCCCc--EEEEeCCCCceeEEeeCCccceeEEEEcCCCCEEEEEeC-CC--cEEEEeCCCCceeee
Q 010362 312 LVFSRDGSQIL-STSFDST--ARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASS-DC--TVKVWDLKSTDCLQT 385 (512)
Q Consensus 312 ~~~~~~~~~l~-~~~~dg~--v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg--~i~iwd~~~~~~~~~ 385 (512)
.+|+|||+.|+ +.+.++. |++||+.+++. ..+..+........|+|||+.++.++. +| .|.++|+.++....
T Consensus 251 ~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~- 328 (435)
T PRK05137 251 PRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTT-TRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRR- 328 (435)
T ss_pred cEECCCCCEEEEEEecCCCceEEEEECCCCce-EEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEE-
Confidence 99999999876 4455554 88889877655 445556666778999999998887664 33 58888877654332
Q ss_pred cCCCCCCCCCCceeEEEEEcCCCCCeEEEEcCC--CcEEEEecCCeEEEEeeCCcccCCcEEEEEECCCCCEEEEEeCC-
Q 010362 386 FKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKT--SSIYIMTLQGQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGED- 462 (512)
Q Consensus 386 ~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~--~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d- 462 (512)
+.. ....+....|+|++..++++.... ..+.+|+..+.....+... ..+....|+|||+.|+..+.+
T Consensus 329 lt~------~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~~~lt~~----~~~~~p~~spDG~~i~~~~~~~ 398 (435)
T PRK05137 329 ISF------GGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGERILTSG----FLVEGPTWAPNGRVIMFFRQTP 398 (435)
T ss_pred eec------CCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCceEeccCC----CCCCCCeECCCCCEEEEEEccC
Confidence 221 123455678999985554444333 3688888876555444332 235578999999998776542
Q ss_pred -----CeEEEEEcCCCeeEEeccccCCCeEEEEEcCC
Q 010362 463 -----RNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPH 494 (512)
Q Consensus 463 -----g~i~iwd~~~~~~~~~~~~h~~~v~~v~~~p~ 494 (512)
..++++|+..+.. ..+. ..+.+...+|+|-
T Consensus 399 ~~~~~~~L~~~dl~g~~~-~~l~-~~~~~~~p~Wsp~ 433 (435)
T PRK05137 399 GSGGAPKLYTVDLTGRNE-REVP-TPGDASDPAWSPL 433 (435)
T ss_pred CCCCcceEEEEECCCCce-EEcc-CCCCccCcccCCC
Confidence 3688889876655 3444 2445677788873
No 220
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.69 E-value=1.5e-15 Score=137.97 Aligned_cols=201 Identities=20% Similarity=0.315 Sum_probs=141.5
Q ss_pred CCCCEEEEEeCCCeEEEEEcCCCeeeccccccccceeeccCcceeEEEEcCC-CCeEEEEeCCCeEEEEEccCCeeeEEe
Q 010362 223 PDGQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRD-SEMLASGSQDGKIKVWRIRSGQCLRRL 301 (512)
Q Consensus 223 ~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~-~~~l~s~~~dg~i~vwd~~~~~~~~~~ 301 (512)
|++--+..|-.-|.|.+.|....+..+-+.. ...-....|+|+.|-|. ...++.+-.+|.+.+||.. +
T Consensus 183 ~~g~dllIGf~tGqvq~idp~~~~~sklfne----~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~-------~ 251 (636)
T KOG2394|consen 183 PKGLDLLIGFTTGQVQLIDPINFEVSKLFNE----ERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKE-------I 251 (636)
T ss_pred CCCcceEEeeccCceEEecchhhHHHHhhhh----cccccccceEEEEEEeCCCceEEEEEecCceEEeecc-------c
Confidence 5676788888889999988655322221111 11114578999999994 4566667779999999861 1
Q ss_pred ccccccCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeeCCccceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCc
Q 010362 302 ERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTD 381 (512)
Q Consensus 302 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 381 (512)
. ....-.+....+++..+......+. .+..++..+.--.+.|+..+|+|||++|++.+.||.++|||..+.+
T Consensus 252 ~--~~~t~p~~~~~k~~~~f~i~t~ksk------~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~e 323 (636)
T KOG2394|consen 252 V--CGATAPSYQALKDGDQFAILTSKSK------KTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQE 323 (636)
T ss_pred c--ccCCCCcccccCCCCeeEEeeeecc------ccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHH
Confidence 1 1111111222345666554432211 1224455554455689999999999999999999999999998765
Q ss_pred eeeecCCCCCCCCCCceeEEEEEcCCCCCeEEEEcCCCcEEEEecCCeEEEEeeCCcccCCcEEEEEECCCCCEEEEEeC
Q 010362 382 CLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGE 461 (512)
Q Consensus 382 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~ 461 (512)
....++. .-+...|+||||||+||++|++
T Consensus 324 Llg~mkS---------------------------------------------------YFGGLLCvcWSPDGKyIvtGGE 352 (636)
T KOG2394|consen 324 LLGVMKS---------------------------------------------------YFGGLLCVCWSPDGKYIVTGGE 352 (636)
T ss_pred HHHHHHh---------------------------------------------------hccceEEEEEcCCccEEEecCC
Confidence 4433321 0134789999999999999999
Q ss_pred CCeEEEEEcCCCeeEEeccccCCCeEEEEEcC
Q 010362 462 DRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHP 493 (512)
Q Consensus 462 dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~p 493 (512)
|.-|.||.+..++.+..-++|.+.|+.|+|.|
T Consensus 353 DDLVtVwSf~erRVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 353 DDLVTVWSFEERRVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred cceEEEEEeccceEEEeccccccceeeEeecc
Confidence 99999999999999999999999999999983
No 221
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.69 E-value=1.7e-13 Score=117.02 Aligned_cols=272 Identities=16% Similarity=0.240 Sum_probs=183.1
Q ss_pred eEEEEECCCCCEEEEEeCCCeEEEEEcCCCeeeccccccccceeeccCcceeEEEEcCCCCeEEEE-eCC------CeEE
Q 010362 216 AECARFSPDGQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASG-SQD------GKIK 288 (512)
Q Consensus 216 v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~-~~d------g~i~ 288 (512)
..+++|+.|...+++|..+| .+||+++.-+....... ....-.+.-|-|- .++||.. +.+ ..|.
T Consensus 8 ~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r~~------~~~G~~~veMLfR--~N~laLVGGg~~pky~pNkvi 78 (346)
T KOG2111|consen 8 TLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQF------IDGGFKIVEMLFR--SNYLALVGGGSRPKYPPNKVI 78 (346)
T ss_pred eeEEEEccCCceEEEEecCc-eEEEecCchhhhhhhcc------ccCchhhhhHhhh--hceEEEecCCCCCCCCCceEE
Confidence 45599999999999999666 89999876332221111 1111222223232 3344433 322 4799
Q ss_pred EEEccCCeeeEEeccccccCeEEEEEecCCCEEEEEeCCCcEEEEeCC-CCceeEEeeCC--ccceeEEEEcCCCCEEEE
Q 010362 289 VWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLK-SGKLLKEFRGH--SSYVNDAIFTNDGSRVVT 365 (512)
Q Consensus 289 vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~i~d~~-~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~ 365 (512)
|||=....++..+. ...+|.++.+.++ .|++.- .+.|++|... +.+.+..+... .....+++-+.+...|+.
T Consensus 79 IWDD~k~~~i~el~--f~~~I~~V~l~r~--riVvvl-~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~Laf 153 (346)
T KOG2111|consen 79 IWDDLKERCIIELS--FNSEIKAVKLRRD--RIVVVL-ENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAF 153 (346)
T ss_pred EEecccCcEEEEEE--eccceeeEEEcCC--eEEEEe-cCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEc
Confidence 99966677777774 7889999999865 566655 6789999986 44555555432 223433333334444544
Q ss_pred -EeCCCcEEEEeCCCCceeeecCCCCCCCCCCceeEEEEEcCCCCCeEEEEcCCCc-EEEEecC-CeEEEEeeCCcccCC
Q 010362 366 -ASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSS-IYIMTLQ-GQVVKSFSSGKREGG 442 (512)
Q Consensus 366 -~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~-i~~~~~~-~~~~~~~~~~~~~~~ 442 (512)
|-.-|.|.|-|+...+.- ++..+.+|...|.+++.+-++ .++++++..|+ |++||.. |..+..+..+. ...
T Consensus 154 Pg~k~GqvQi~dL~~~~~~----~p~~I~AH~s~Iacv~Ln~~G-t~vATaStkGTLIRIFdt~~g~~l~E~RRG~-d~A 227 (346)
T KOG2111|consen 154 PGFKTGQVQIVDLASTKPN----APSIINAHDSDIACVALNLQG-TLVATASTKGTLIRIFDTEDGTLLQELRRGV-DRA 227 (346)
T ss_pred CCCccceEEEEEhhhcCcC----CceEEEcccCceeEEEEcCCc-cEEEEeccCcEEEEEEEcCCCcEeeeeecCC-chh
Confidence 334689999999876542 344456899999999999988 89999999887 8999998 66666666665 356
Q ss_pred cEEEEEECCCCCEEEEEeCCCeEEEEEcCCCeeEE------------------------eccccCCCeEEEEEcCCCCeE
Q 010362 443 DFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEH------------------------LMKVHEKDVIGVTHHPHRNLL 498 (512)
Q Consensus 443 ~~~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~------------------------~~~~h~~~v~~v~~~p~~~~l 498 (512)
.+.+++|||++.+|++.++.|+++||.++....-. .+....++..-++|..+.+.+
T Consensus 228 ~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~~~~~~~~SSl~~~~~~lpky~~S~wS~~~f~l~~~~~~~~~fg~~~nsv 307 (346)
T KOG2111|consen 228 DIYCIAFSPNSSWLAVSSDKGTLHIFSLRDTENTEDESSSLSFKRLVLPKYFSSEWSFAKFQLPQGTQCIIAFGSETNTV 307 (346)
T ss_pred eEEEEEeCCCccEEEEEcCCCeEEEEEeecCCCCccccccccccccccchhcccceeEEEEEccCCCcEEEEecCCCCeE
Confidence 79999999999999999999999999887532111 111223455567777665666
Q ss_pred EEEECCCeE
Q 010362 499 ATYGEDCTM 507 (512)
Q Consensus 499 ~s~~~dg~i 507 (512)
+..+.||+-
T Consensus 308 i~i~~Dgsy 316 (346)
T KOG2111|consen 308 IAICADGSY 316 (346)
T ss_pred EEEEeCCcE
Confidence 666677764
No 222
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.69 E-value=1.5e-14 Score=139.85 Aligned_cols=235 Identities=15% Similarity=0.226 Sum_probs=154.5
Q ss_pred CeEEEEEcCCCeeeccccccccceeeccCcceeEEEEcCCCCeEEEEeCC---CeEEEEEccCCeeeEEeccccccCeEE
Q 010362 235 GFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQD---GKIKVWRIRSGQCLRRLERAHSEGVTS 311 (512)
Q Consensus 235 g~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d---g~i~vwd~~~~~~~~~~~~~~~~~i~~ 311 (512)
..|.++|.+.... . .+..+...+.+.+|+|||+.|+..+.+ ..|.+||+.+++.... . ...+.+.+
T Consensus 176 ~~L~~~D~dG~~~-~--------~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l-~-~~~g~~~~ 244 (427)
T PRK02889 176 YQLQISDADGQNA-Q--------SALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVV-A-NFKGSNSA 244 (427)
T ss_pred cEEEEECCCCCCc-e--------EeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEe-e-cCCCCccc
Confidence 4577777643221 1 122367789999999999999887643 3599999998875433 2 23456678
Q ss_pred EEEecCCCEEEE-EeCCCcEEEE--eCCCCceeEEeeCCccceeEEEEcCCCCEEEEEeC-CCcEEEEeC--CCCceeee
Q 010362 312 LVFSRDGSQILS-TSFDSTARIH--GLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASS-DCTVKVWDL--KSTDCLQT 385 (512)
Q Consensus 312 ~~~~~~~~~l~~-~~~dg~v~i~--d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~iwd~--~~~~~~~~ 385 (512)
.+|+|||+.|+. .+.+|...+| |..++. ...+..+........|+|||+.++..+. +|...+|.+ .++....
T Consensus 245 ~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~- 322 (427)
T PRK02889 245 PAWSPDGRTLAVALSRDGNSQIYTVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQR- 322 (427)
T ss_pred eEECCCCCEEEEEEccCCCceEEEEECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEE-
Confidence 999999998874 5667765555 554443 4555555555677899999998876654 466666654 4443222
Q ss_pred cCCCCCCCCCCceeEEEEEcCCCCCeEEEEcCCC---cEEEEecCCeEEEEeeCCcccCCcEEEEEECCCCCEEEEEeCC
Q 010362 386 FKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTS---SIYIMTLQGQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGED 462 (512)
Q Consensus 386 ~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~---~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d 462 (512)
+... ........|+|++ +.++..+.++ .|++||+.+.....+.... ......|+|||+.|+..+.+
T Consensus 323 lt~~------g~~~~~~~~SpDG-~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt~~~----~~~~p~~spdg~~l~~~~~~ 391 (427)
T PRK02889 323 VTFT------GSYNTSPRISPDG-KLLAYISRVGGAFKLYVQDLATGQVTALTDTT----RDESPSFAPNGRYILYATQQ 391 (427)
T ss_pred EecC------CCCcCceEECCCC-CEEEEEEccCCcEEEEEEECCCCCeEEccCCC----CccCceECCCCCEEEEEEec
Confidence 1111 1123356899988 4554444333 6999999865555544321 23567999999999888754
Q ss_pred C---eEEEEEcCCCeeEEeccccCCCeEEEEEcCC
Q 010362 463 R---NLYCFSHQSGKLEHLMKVHEKDVIGVTHHPH 494 (512)
Q Consensus 463 g---~i~iwd~~~~~~~~~~~~h~~~v~~v~~~p~ 494 (512)
+ .+++.+. +|.....+..+.+.+...+|+|-
T Consensus 392 ~g~~~l~~~~~-~g~~~~~l~~~~g~~~~p~wsp~ 425 (427)
T PRK02889 392 GGRSVLAAVSS-DGRIKQRLSVQGGDVREPSWGPF 425 (427)
T ss_pred CCCEEEEEEEC-CCCceEEeecCCCCCCCCccCCC
Confidence 4 3666666 56666667667778888899884
No 223
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.69 E-value=7.3e-16 Score=138.33 Aligned_cols=255 Identities=18% Similarity=0.276 Sum_probs=198.5
Q ss_pred ceeeccCcceeEEEEcCCCCeEEEEeCCCeEEEEEccCCeeeEEeccccccCeEEEEEec--CCCEEEEEeCCCcEEEEe
Q 010362 257 ETFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSR--DGSQILSTSFDSTARIHG 334 (512)
Q Consensus 257 ~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~l~~~~~dg~v~i~d 334 (512)
..+..|.+.|..+.|+..|..|++|+.|..|.+||...+..+..+..+|...|....|-| +...+++++.||.|++=.
T Consensus 136 ~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~ 215 (559)
T KOG1334|consen 136 KKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSE 215 (559)
T ss_pred hcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeeee
Confidence 356679999999999999999999999999999999999999999989999999888988 456799999999999876
Q ss_pred CCCCce---eEEeeCCccceeEEEEcCCC-CEEEEEeCCCcEEEEeCCCCceeeecCCCCCCCCCCceeEEEEEcCCCCC
Q 010362 335 LKSGKL---LKEFRGHSSYVNDAIFTNDG-SRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPD 410 (512)
Q Consensus 335 ~~~~~~---~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 410 (512)
+..... ...+..|.++|.-++.-|+. ..|.+++.|+.+.-+|++.......+.....-.......+.++..|.+..
T Consensus 216 i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~ 295 (559)
T KOG1334|consen 216 ILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTN 295 (559)
T ss_pred eccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCcc
Confidence 643322 23455689999999998855 46889999999999999988766555422211111236789999999999
Q ss_pred eEEEEcCCCcEEEEecCCeE-------EEEeeCCc---ccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCC--C-----
Q 010362 411 HIVVCNKTSSIYIMTLQGQV-------VKSFSSGK---REGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQS--G----- 473 (512)
Q Consensus 411 ~l~~~~~~~~i~~~~~~~~~-------~~~~~~~~---~~~~~~~~~~~s~~g~~l~~g~~dg~i~iwd~~~--~----- 473 (512)
.+++++.+...++||.+.-. +..+.... .....|++++++.++.-+.+...|-.|++|.-.- |
T Consensus 296 ~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~ 375 (559)
T KOG1334|consen 296 EFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDP 375 (559)
T ss_pred ccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCCCCC
Confidence 99999999999999987221 12222111 2345689999998888888888899999995432 2
Q ss_pred -----eeEE-eccccCC--CeEEEE-EcCCCCeEEEEECCCeEEEec
Q 010362 474 -----KLEH-LMKVHEK--DVIGVT-HHPHRNLLATYGEDCTMKLWK 511 (512)
Q Consensus 474 -----~~~~-~~~~h~~--~v~~v~-~~p~~~~l~s~~~dg~i~iW~ 511 (512)
..+. .+++|.+ .|.++- |-|...+++|||+=|.|.||+
T Consensus 376 ~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~ 422 (559)
T KOG1334|consen 376 SSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWD 422 (559)
T ss_pred CcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEe
Confidence 2233 3788864 466665 467889999999999999997
No 224
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.68 E-value=1.1e-14 Score=127.49 Aligned_cols=246 Identities=17% Similarity=0.261 Sum_probs=169.6
Q ss_pred cCcCceEEEEECCCCC--EEEEEeCCCeEEEEEcCCCeeeccccccccceeeccCcceeEEEEcCCCCeEEEEeCCCeEE
Q 010362 211 GTKSHAECARFSPDGQ--FLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQDGKIK 288 (512)
Q Consensus 211 ~h~~~v~~~~~s~~~~--~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~ 288 (512)
.-...|+.++|.-+++ .+...+.|..+..+.+........+. ..........+|..++.. +..|++|-.+|.+.
T Consensus 53 ~~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~--~~~~~~l~~~~I~gl~~~--dg~Litc~~sG~l~ 128 (412)
T KOG3881|consen 53 DELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLD--DAKTVSLGTKSIKGLKLA--DGTLITCVSSGNLQ 128 (412)
T ss_pred chhhhhhhheeecCCceeEeeccccCcccccccccCCccccccc--cccccccccccccchhhc--CCEEEEEecCCcEE
Confidence 4456688888876554 45555567777777776665544331 112333456777777765 34788888999999
Q ss_pred EEEccCCe----eeEEeccccccCeEEEEEecCCCE-EEEEeCC--CcEEEEeCCCCceeEEeeCC---------cccee
Q 010362 289 VWRIRSGQ----CLRRLERAHSEGVTSLVFSRDGSQ-ILSTSFD--STARIHGLKSGKLLKEFRGH---------SSYVN 352 (512)
Q Consensus 289 vwd~~~~~----~~~~~~~~~~~~i~~~~~~~~~~~-l~~~~~d--g~v~i~d~~~~~~~~~~~~~---------~~~v~ 352 (512)
+|....+. .+..+. ...++..+.-++...+ +++|+.. ..+.+||++..+.+.+-+.- .-.++
T Consensus 129 ~~~~k~~d~hss~l~~la--~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~t 206 (412)
T KOG3881|consen 129 VRHDKSGDLHSSKLIKLA--TGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWIT 206 (412)
T ss_pred EEeccCCccccccceeee--cCCceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeec
Confidence 99988543 222222 3355667776665444 5558888 78999999887555443321 11244
Q ss_pred EEEEcCC--CCEEEEEeCCCcEEEEeCCCCceeeecCCCCCCCCCCceeEEEEEcCCCCCeEEEEcCCCcEEEEecCCeE
Q 010362 353 DAIFTND--GSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQV 430 (512)
Q Consensus 353 ~~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~ 430 (512)
++.|-+. ...|++++.-+.+++||.+.++ ++
T Consensus 207 di~Fl~g~~~~~fat~T~~hqvR~YDt~~qR-----------------------------------------------RP 239 (412)
T KOG3881|consen 207 DIRFLEGSPNYKFATITRYHQVRLYDTRHQR-----------------------------------------------RP 239 (412)
T ss_pred cceecCCCCCceEEEEecceeEEEecCcccC-----------------------------------------------cc
Confidence 5555554 4556666666666666655432 12
Q ss_pred EEEeeCCcccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCeeEEe-ccccCCCeEEEEEcCCCCeEEEEECCCeEEE
Q 010362 431 VKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHL-MKVHEKDVIGVTHHPHRNLLATYGEDCTMKL 509 (512)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~-~~~h~~~v~~v~~~p~~~~l~s~~~dg~i~i 509 (512)
+..+.. ...+++++...|+|++|++|..-|.+..||.+.+++... +.+-.+.|++|..+|.++++|+||-|..|||
T Consensus 240 V~~fd~---~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRI 316 (412)
T KOG3881|consen 240 VAQFDF---LENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRI 316 (412)
T ss_pred eeEecc---ccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEE
Confidence 222221 134688999999999999999999999999999998877 8889999999999999999999999999999
Q ss_pred ecC
Q 010362 510 WKP 512 (512)
Q Consensus 510 W~~ 512 (512)
+|.
T Consensus 317 hD~ 319 (412)
T KOG3881|consen 317 HDI 319 (412)
T ss_pred eec
Confidence 984
No 225
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.67 E-value=5.1e-14 Score=129.04 Aligned_cols=270 Identities=16% Similarity=0.214 Sum_probs=178.2
Q ss_pred CceEEEEECCCCCEEEEEeCCCeEEEEEcCCCeeeccccccccceeeccCcceeEEEEcCCCCeEEEE-----eC-----
Q 010362 214 SHAECARFSPDGQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASG-----SQ----- 283 (512)
Q Consensus 214 ~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~-----~~----- 283 (512)
......++|++|+++|.+. +..++|++..++...... ....+.++.|+|-|.+|.+= ..
T Consensus 35 ~~~~v~~~S~~G~lfA~~~-~~~v~i~~~~~~~~~lt~----------~~~~~~~L~fSP~g~yL~T~e~~~i~~~~~~~ 103 (566)
T KOG2315|consen 35 RPCNVFAYSNNGRLFAYSD-NQVVKVFEIATLKVVLCV----------ELKKTYDLLFSPKGNYLLTWEPWAIYGPKNAS 103 (566)
T ss_pred CcceeEEEcCCCcEEEEEc-CCeEEEEEccCCcEEEEe----------ccceeeeeeecccccccccccccccccCCCCC
Confidence 3466788999999988776 778999998877532221 22378999999999988752 11
Q ss_pred CCeEEEEEccCCeeeEEeccccccCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeeCCccceeEEEEcCCCC--
Q 010362 284 DGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGS-- 361 (512)
Q Consensus 284 dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~-- 361 (512)
...+.+|++.++.....+....... .+..|++|..+.+- -..+.+++|++.+.+.+. -+-|...|+.+.++|.+.
T Consensus 104 ~pn~~v~~vet~~~~s~~q~k~Q~~-W~~qfs~dEsl~ar-lv~nev~f~~~~~f~~~~-~kl~~~~i~~f~lSpgp~~~ 180 (566)
T KOG2315|consen 104 NPNVLVYNVETGVQRSQIQKKMQNG-WVPQFSIDESLAAR-LVSNEVQFYDLGSFKTIQ-HKLSVSGITMLSLSPGPEPP 180 (566)
T ss_pred CCceeeeeeccceehhheehhhhcC-cccccccchhhhhh-hhcceEEEEecCCcccee-eeeeccceeeEEecCCCCCc
Confidence 2357899999976655555333332 56777776543322 224567777765432221 112344455555555421
Q ss_pred EEEE-----EeCCCcEEEEe---------------------------------------------------------CCC
Q 010362 362 RVVT-----ASSDCTVKVWD---------------------------------------------------------LKS 379 (512)
Q Consensus 362 ~l~~-----~~~dg~i~iwd---------------------------------------------------------~~~ 379 (512)
.+++ .+.-+.++||. +..
T Consensus 181 ~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g 260 (566)
T KOG2315|consen 181 FVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQG 260 (566)
T ss_pred eEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecC
Confidence 1221 12223344443 331
Q ss_pred CceeeecCCCCCCCCCCceeEEEEEcCCCCCeEE-EEcCCCcEEEEecCCeEEEEeeCCcccCCcEEEEEECCCCCEEEE
Q 010362 380 TDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIV-VCNKTSSIYIMTLQGQVVKSFSSGKREGGDFVAACVSPKGEWIYC 458 (512)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~ 458 (512)
..+...+ ...++|.++.|+|.+..+.+ .|-.-..+.++|+++..+..+..+. -.++-|+|.|++|+.
T Consensus 261 ~s~~V~L-------~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~~v~df~egp-----RN~~~fnp~g~ii~l 328 (566)
T KOG2315|consen 261 ESVSVPL-------LKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGKPVFDFPEGP-----RNTAFFNPHGNIILL 328 (566)
T ss_pred ceEEEec-------CCCCCceEEEECCCCCEEEEEEecccceEEEEcCCCCEeEeCCCCC-----ccceEECCCCCEEEE
Confidence 1111111 13579999999999866644 4556788999999999988876544 568999999999988
Q ss_pred EeC---CCeEEEEEcCCCeeEEeccccCCCeEEEEEcCCCCeEEEEEC------CCeEEEec
Q 010362 459 VGE---DRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPHRNLLATYGE------DCTMKLWK 511 (512)
Q Consensus 459 g~~---dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~~~------dg~i~iW~ 511 (512)
+|- -|.+-|||+.+.+++..+.... -+-+.|+|||.+|+|++. |+.++||+
T Consensus 329 AGFGNL~G~mEvwDv~n~K~i~~~~a~~--tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwh 388 (566)
T KOG2315|consen 329 AGFGNLPGDMEVWDVPNRKLIAKFKAAN--TTVFEWSPDGEYFLTATTAPRLRVDNGIKIWH 388 (566)
T ss_pred eecCCCCCceEEEeccchhhccccccCC--ceEEEEcCCCcEEEEEeccccEEecCCeEEEE
Confidence 874 5789999999998888887544 345799999999998874 67788885
No 226
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.67 E-value=2.1e-15 Score=137.07 Aligned_cols=146 Identities=18% Similarity=0.318 Sum_probs=117.2
Q ss_pred CcCceEEEEECCCC-CEEEEEeCCCeEEEEEcCCCeeec--------------------cccccccceeeccCcceeEEE
Q 010362 212 TKSHAECARFSPDG-QFLVSCSFDGFIEVWDYLSGKLKK--------------------DLQYQADETFMMHDETVLCIE 270 (512)
Q Consensus 212 h~~~v~~~~~s~~~-~~l~sg~~dg~i~iwd~~~~~~~~--------------------~~~~~~~~~~~~h~~~v~~l~ 270 (512)
.+..|+|+.|-|.+ ..++++-.+|.+++||.....-.. ...-.+...+..-.+.|...+
T Consensus 218 ~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~ 297 (636)
T KOG2394|consen 218 NKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFA 297 (636)
T ss_pred cccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEecccccccee
Confidence 34789999999954 455666789999999753110000 000012223333456889999
Q ss_pred EcCCCCeEEEEeCCCeEEEEEccCCeeeEEeccccccCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeeCCccc
Q 010362 271 FSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSY 350 (512)
Q Consensus 271 ~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~ 350 (512)
|+|||++||+.+.||.++|||..+.+.+..+. .--+...|++|+|||++|++|+.|.-|.||.+..++.+..-.+|++.
T Consensus 298 FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mk-SYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSW 376 (636)
T KOG2394|consen 298 FSPDGKYLATVSQDGFLRIFDFDTQELLGVMK-SYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSW 376 (636)
T ss_pred EcCCCceEEEEecCceEEEeeccHHHHHHHHH-hhccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEeccccccc
Confidence 99999999999999999999999988777665 56688999999999999999999999999999999999999999999
Q ss_pred eeEEEEcC
Q 010362 351 VNDAIFTN 358 (512)
Q Consensus 351 v~~~~~~~ 358 (512)
|+.++|.|
T Consensus 377 Vs~VaFDp 384 (636)
T KOG2394|consen 377 VSVVAFDP 384 (636)
T ss_pred eeeEeecc
Confidence 99999997
No 227
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.66 E-value=1.6e-16 Score=141.57 Aligned_cols=260 Identities=17% Similarity=0.183 Sum_probs=199.0
Q ss_pred ccCcccccccccccCccccceEEEecCcCceEEEEECCCCCEEEEEeCCCeEEEEEcCCCeeeccccccccceeeccCcc
Q 010362 186 FRGTAAMKQDVEDMYPTTLSHTIKFGTKSHAECARFSPDGQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHDET 265 (512)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~ 265 (512)
..|...++....|+....+...+ .-...|..+.|-.+.+++|++- ...++|||- .|.....+. ....
T Consensus 145 llgGrKGHlAa~Dw~t~~L~~Ei--~v~Etv~Dv~~LHneq~~AVAQ-K~y~yvYD~-~GtElHClk---------~~~~ 211 (545)
T KOG1272|consen 145 LLGGRKGHLAAFDWVTKKLHFEI--NVMETVRDVTFLHNEQFFAVAQ-KKYVYVYDN-NGTELHCLK---------RHIR 211 (545)
T ss_pred EecCCccceeeeecccceeeeee--ehhhhhhhhhhhcchHHHHhhh-hceEEEecC-CCcEEeehh---------hcCc
Confidence 33444556666666666666555 3456688999999999999876 678999994 444444333 3467
Q ss_pred eeEEEEcCCCCeEEEEeCCCeEEEEEccCCeeeEEeccccccCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEee
Q 010362 266 VLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFR 345 (512)
Q Consensus 266 v~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~ 345 (512)
|..+.|-|..-+|++++..|.++.-|+.+|+.+..+. ...+.+..++-+|-+..+-+|...|+|.+|...+.+++..+-
T Consensus 212 v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~-t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvKiL 290 (545)
T KOG1272|consen 212 VARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIR-TGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKIL 290 (545)
T ss_pred hhhhcccchhheeeecccCCceEEEeechhhhhHHHH-ccCCccchhhcCCccceEEEcCCCceEEecCCCCcchHHHHH
Confidence 9999999999899999999999999999999999887 567889999999988899999999999999999999999999
Q ss_pred CCccceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeecCCCCCCCCCCceeEEEEEcCCCCCeEEEEcCCCcEEEEe
Q 010362 346 GHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMT 425 (512)
Q Consensus 346 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~~~ 425 (512)
.|.++|.++++.++|.+++|++.|..++|||+++.....++..+ .+...++++. ..+++++....+.+|.
T Consensus 291 cH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~tp-------~~a~~ls~Sq---kglLA~~~G~~v~iw~ 360 (545)
T KOG1272|consen 291 CHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRTP-------HPASNLSLSQ---KGLLALSYGDHVQIWK 360 (545)
T ss_pred hcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeecC-------CCcccccccc---ccceeeecCCeeeeeh
Confidence 99999999999999999999999999999999988766665532 2445555554 4466667777888886
Q ss_pred cC--Ce-EEEEeeCCcccCCcEEEEEECCCCCEEEEEeCCCeEEEEE
Q 010362 426 LQ--GQ-VVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFS 469 (512)
Q Consensus 426 ~~--~~-~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~dg~i~iwd 469 (512)
-. +. ........+...+.|..+.|.|-...|-.|...|.-.+.=
T Consensus 361 d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G~tsilV 407 (545)
T KOG1272|consen 361 DALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGGITSILV 407 (545)
T ss_pred hhhcCCCCCCcchhhhccCcccccceeccHHHeeeccccCCceeEec
Confidence 43 11 2222222222345788999999888877777666544443
No 228
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.65 E-value=2.5e-13 Score=131.80 Aligned_cols=212 Identities=17% Similarity=0.189 Sum_probs=142.4
Q ss_pred CeEEEEEccCCeeeEEeccccccCeEEEEEecCCCEEEEEeCC---CcEEEEeCCCCceeEEeeCCccceeEEEEcCCCC
Q 010362 285 GKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFD---STARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGS 361 (512)
Q Consensus 285 g~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---g~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~ 361 (512)
..|.+||...+ ....+. .+...+.+.+|+|||+.|+.++.+ ..|++||+.+++... +....+...+..|+|+|+
T Consensus 184 ~~l~i~D~~g~-~~~~lt-~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g~~~~~~~SpDG~ 260 (433)
T PRK04922 184 YALQVADSDGY-NPQTIL-RSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VASFRGINGAPSFSPDGR 260 (433)
T ss_pred EEEEEECCCCC-CceEee-cCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-eccCCCCccCceECCCCC
Confidence 46899997644 344444 466789999999999999988743 469999998776533 333444456789999999
Q ss_pred EEE-EEeCCC--cEEEEeCCCCceeeecCCCCCCCCCCceeEEEEEcCCCCCeEEEEcCCCc--EEEEecCCeEEEEeeC
Q 010362 362 RVV-TASSDC--TVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSS--IYIMTLQGQVVKSFSS 436 (512)
Q Consensus 362 ~l~-~~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~--i~~~~~~~~~~~~~~~ 436 (512)
.++ +.+.+| .|.+||+.++.... +. .+........|+|++..++++...++. ++++++.+.....+..
T Consensus 261 ~l~~~~s~~g~~~Iy~~d~~~g~~~~-lt------~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~ 333 (433)
T PRK04922 261 RLALTLSRDGNPEIYVMDLGSRQLTR-LT------NHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLTF 333 (433)
T ss_pred EEEEEEeCCCCceEEEEECCCCCeEE-Cc------cCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEeec
Confidence 775 445555 59999998876433 22 122334567999998555555555555 6667776544444432
Q ss_pred CcccCCcEEEEEECCCCCEEEEEeCCC---eEEEEEcCCCeeEEeccccCCCeEEEEEcCCCCeEEEEECC---CeEEEe
Q 010362 437 GKREGGDFVAACVSPKGEWIYCVGEDR---NLYCFSHQSGKLEHLMKVHEKDVIGVTHHPHRNLLATYGED---CTMKLW 510 (512)
Q Consensus 437 ~~~~~~~~~~~~~s~~g~~l~~g~~dg---~i~iwd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~~~d---g~i~iW 510 (512)
. +......+|+|||++|+..+.++ .|++||+.+++.. .+. +........|+|||++++..+.+ +.|.++
T Consensus 334 ~---g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt-~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~ 408 (433)
T PRK04922 334 Q---GNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLT-PGSLDESPSFAPNGSMVLYATREGGRGVLAAV 408 (433)
T ss_pred C---CCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECC-CCCCCCCceECCCCCEEEEEEecCCceEEEEE
Confidence 2 12234689999999998876433 6999999888765 333 22234567999999987766653 345555
Q ss_pred c
Q 010362 511 K 511 (512)
Q Consensus 511 ~ 511 (512)
+
T Consensus 409 ~ 409 (433)
T PRK04922 409 S 409 (433)
T ss_pred E
Confidence 4
No 229
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.65 E-value=1.8e-13 Score=132.20 Aligned_cols=217 Identities=17% Similarity=0.194 Sum_probs=146.2
Q ss_pred cCcCceEEEEECCCCCEEEEEe---CCCeEEEEEcCCCeeeccccccccceeeccCcceeEEEEcCCCCeEEEE-eCCC-
Q 010362 211 GTKSHAECARFSPDGQFLVSCS---FDGFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASG-SQDG- 285 (512)
Q Consensus 211 ~h~~~v~~~~~s~~~~~l~sg~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~-~~dg- 285 (512)
.+...+.+.+|||||+.|+..+ .+..|.+|++.+++...... ....+...+|+|||+.|+.. +.+|
T Consensus 196 ~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~---------~~~~~~~~~~SPDG~~La~~~~~~g~ 266 (429)
T PRK03629 196 RSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVAS---------FPRHNGAPAFSPDGSKLAFALSKTGS 266 (429)
T ss_pred cCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccC---------CCCCcCCeEECCCCCEEEEEEcCCCC
Confidence 5667899999999999998764 24579999998875432211 22334568999999988865 3444
Q ss_pred -eEEEEEccCCeeeEEeccccccCeEEEEEecCCCEEEEEeCC-C--cEEEEeCCCCceeEEeeCCccceeEEEEcCCCC
Q 010362 286 -KIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFD-S--TARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGS 361 (512)
Q Consensus 286 -~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-g--~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~ 361 (512)
.|.+||+.+++... +. .+...+....|+|||+.|+..+.+ + .|+.+|+.+++. ..+..+.....+..|+|+|+
T Consensus 267 ~~I~~~d~~tg~~~~-lt-~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~SpDG~ 343 (429)
T PRK03629 267 LNLYVMDLASGQIRQ-VT-DGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAP-QRITWEGSQNQDADVSSDGK 343 (429)
T ss_pred cEEEEEECCCCCEEE-cc-CCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCe-EEeecCCCCccCEEECCCCC
Confidence 58899998887544 33 344567889999999998877754 3 455667766644 33443444566789999999
Q ss_pred EEEEEeCC---CcEEEEeCCCCceeeecCCCCCCCCCCceeEEEEEcCCCCCeEEEEcCCC---cEEEEecCCeEEEEee
Q 010362 362 RVVTASSD---CTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTS---SIYIMTLQGQVVKSFS 435 (512)
Q Consensus 362 ~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~---~i~~~~~~~~~~~~~~ 435 (512)
+++..+.+ ..|.+||+.++... .+... .......|+|++ ..++..+.++ .+.++++++.....+.
T Consensus 344 ~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt~~-------~~~~~p~~SpDG-~~i~~~s~~~~~~~l~~~~~~G~~~~~l~ 414 (429)
T PRK03629 344 FMVMVSSNGGQQHIAKQDLATGGVQ-VLTDT-------FLDETPSIAPNG-TMVIYSSSQGMGSVLNLVSTDGRFKARLP 414 (429)
T ss_pred EEEEEEccCCCceEEEEECCCCCeE-EeCCC-------CCCCCceECCCC-CEEEEEEcCCCceEEEEEECCCCCeEECc
Confidence 98876543 35888999887643 22211 112356799998 5555555444 3777888877766665
Q ss_pred CCcccCCcEEEEEECC
Q 010362 436 SGKREGGDFVAACVSP 451 (512)
Q Consensus 436 ~~~~~~~~~~~~~~s~ 451 (512)
.. .+.+...+|+|
T Consensus 415 ~~---~~~~~~p~Wsp 427 (429)
T PRK03629 415 AT---DGQVKFPAWSP 427 (429)
T ss_pred cC---CCCcCCcccCC
Confidence 42 33466677776
No 230
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.65 E-value=3.6e-14 Score=120.47 Aligned_cols=155 Identities=17% Similarity=0.346 Sum_probs=112.8
Q ss_pred EEEEECCCCCEEEEEeC----------CCeEEEEEcCCCe-eeccccccccceeeccCcceeEEEEcCCCCeEEEE--eC
Q 010362 217 ECARFSPDGQFLVSCSF----------DGFIEVWDYLSGK-LKKDLQYQADETFMMHDETVLCIEFSRDSEMLASG--SQ 283 (512)
Q Consensus 217 ~~~~~s~~~~~l~sg~~----------dg~i~iwd~~~~~-~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~--~~ 283 (512)
..+.|+|+|++|++-.. -|...+|.++... ....+. ....++|.+++|+|+|+.||++ ..
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~-------l~~~~~I~~~~WsP~g~~favi~g~~ 81 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIE-------LKKEGPIHDVAWSPNGNEFAVIYGSM 81 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceee-------ccCCCceEEEEECcCCCEEEEEEccC
Confidence 35789999998875443 2345555553222 111111 1134579999999999987665 35
Q ss_pred CCeEEEEEccCCeeeEEeccccccCeEEEEEecCCCEEEEEeCC---CcEEEEeCCCCceeEEeeCCccceeEEEEcCCC
Q 010362 284 DGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFD---STARIHGLKSGKLLKEFRGHSSYVNDAIFTNDG 360 (512)
Q Consensus 284 dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---g~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~ 360 (512)
++.|.+||++ ++.+..+. ...+..+.|+|+|+++++++.+ |.+.+||.++.+.+.... |. .++.++|+|+|
T Consensus 82 ~~~v~lyd~~-~~~i~~~~---~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~-~~-~~t~~~WsPdG 155 (194)
T PF08662_consen 82 PAKVTLYDVK-GKKIFSFG---TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE-HS-DATDVEWSPDG 155 (194)
T ss_pred CcccEEEcCc-ccEeEeec---CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc-cC-cEEEEEEcCCC
Confidence 6799999996 66666653 5678899999999999998754 669999999888887765 33 37899999999
Q ss_pred CEEEEEeC------CCcEEEEeCCCCceeee
Q 010362 361 SRVVTASS------DCTVKVWDLKSTDCLQT 385 (512)
Q Consensus 361 ~~l~~~~~------dg~i~iwd~~~~~~~~~ 385 (512)
+++++++. |..++||+.. |+.+..
T Consensus 156 r~~~ta~t~~r~~~dng~~Iw~~~-G~~l~~ 185 (194)
T PF08662_consen 156 RYLATATTSPRLRVDNGFKIWSFQ-GRLLYK 185 (194)
T ss_pred CEEEEEEeccceeccccEEEEEec-CeEeEe
Confidence 99999874 7889999985 554444
No 231
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.64 E-value=9.4e-12 Score=116.86 Aligned_cols=271 Identities=16% Similarity=0.244 Sum_probs=180.8
Q ss_pred EEEEeCC----CeEEEEEc--CCCeeeccccccccceeeccCcceeEEEEcCCCCeEEEEeC----CCeEEEEEccCC--
Q 010362 228 LVSCSFD----GFIEVWDY--LSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQ----DGKIKVWRIRSG-- 295 (512)
Q Consensus 228 l~sg~~d----g~i~iwd~--~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~----dg~i~vwd~~~~-- 295 (512)
+++|+.. +.|.+|++ +++++...- . .........++++|++++|.++.. +|.|..|++...
T Consensus 2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~------~-~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g 74 (345)
T PF10282_consen 2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQ------T-VAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTG 74 (345)
T ss_dssp EEEEECCSSSSTEEEEEEEETTTTEEEEEE------E-EEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTT
T ss_pred EEEEcCCCCCCCcEEEEEEcCCCCCceEee------e-ecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcc
Confidence 4556655 68888888 444433211 1 114456778999999999999877 579999998764
Q ss_pred ee--eEEeccccccCeEEEEEecCCCEEEEEeC-CCcEEEEeCCCC-ceeEE---ee----------CCccceeEEEEcC
Q 010362 296 QC--LRRLERAHSEGVTSLVFSRDGSQILSTSF-DSTARIHGLKSG-KLLKE---FR----------GHSSYVNDAIFTN 358 (512)
Q Consensus 296 ~~--~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~v~i~d~~~~-~~~~~---~~----------~~~~~v~~~~~~~ 358 (512)
+. +.+.. ........++++|++++++++.. +|.|.++++... ..... +. .......++.++|
T Consensus 75 ~L~~~~~~~-~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~p 153 (345)
T PF10282_consen 75 TLTLLNSVP-SGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSP 153 (345)
T ss_dssp EEEEEEEEE-ESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-T
T ss_pred eeEEeeeec-cCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECC
Confidence 32 33332 24556788999999999998875 789999999763 33222 21 1123467899999
Q ss_pred CCCEEEEEeC-CCcEEEEeCCCCc--ee--eecCCCCCCCCCCceeEEEEEcCCCCCeEEEEcCCCcEEEEecC--CeEE
Q 010362 359 DGSRVVTASS-DCTVKVWDLKSTD--CL--QTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQ--GQVV 431 (512)
Q Consensus 359 ~~~~l~~~~~-dg~i~iwd~~~~~--~~--~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~~~~~--~~~~ 431 (512)
+++++++... ...|.+|++.... .. ..+.. ........+.|+|++...+++...++.|.++++. ....
T Consensus 154 dg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~-----~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~ 228 (345)
T PF10282_consen 154 DGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKV-----PPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSL 228 (345)
T ss_dssp TSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEEC-----STTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEE
T ss_pred CCCEEEEEecCCCEEEEEEEeCCCceEEEeecccc-----ccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCce
Confidence 9998887654 3579999987654 21 12221 1245678899999987778888889999999987 3222
Q ss_pred ---EEeeCC---cccCCcEEEEEECCCCCEEEEEe-CCCeEEEEEcC--CCe--eEEeccccCCCeEEEEEcCCCCeEEE
Q 010362 432 ---KSFSSG---KREGGDFVAACVSPKGEWIYCVG-EDRNLYCFSHQ--SGK--LEHLMKVHEKDVIGVTHHPHRNLLAT 500 (512)
Q Consensus 432 ---~~~~~~---~~~~~~~~~~~~s~~g~~l~~g~-~dg~i~iwd~~--~~~--~~~~~~~h~~~v~~v~~~p~~~~l~s 500 (512)
...... .........++++|||++|+++. ..+.|.+|++. +++ .+..+.......+.++++|++++|++
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~V 308 (345)
T PF10282_consen 229 TEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYV 308 (345)
T ss_dssp EEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEE
T ss_pred eEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEE
Confidence 222221 11122577899999999999887 66789999983 343 33344434455889999999999888
Q ss_pred EE-CCCeEEEec
Q 010362 501 YG-EDCTMKLWK 511 (512)
Q Consensus 501 ~~-~dg~i~iW~ 511 (512)
+. .++.|.+|+
T Consensus 309 a~~~s~~v~vf~ 320 (345)
T PF10282_consen 309 ANQDSNTVSVFD 320 (345)
T ss_dssp EETTTTEEEEEE
T ss_pred EecCCCeEEEEE
Confidence 77 667888874
No 232
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.64 E-value=5.3e-12 Score=118.53 Aligned_cols=274 Identities=18% Similarity=0.235 Sum_probs=179.2
Q ss_pred CcCceEEEEECCCCCEEEEEeC----CCeEEEEEcCCC--eeeccccccccceeeccCcceeEEEEcCCCCeEEEEeC-C
Q 010362 212 TKSHAECARFSPDGQFLVSCSF----DGFIEVWDYLSG--KLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQ-D 284 (512)
Q Consensus 212 h~~~v~~~~~s~~~~~l~sg~~----dg~i~iwd~~~~--~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~-d 284 (512)
.......++++|++++|.+... +|.|..|++... ++.. +. ...........++++|++++|+++.. +
T Consensus 35 ~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~-~~-----~~~~~g~~p~~i~~~~~g~~l~vany~~ 108 (345)
T PF10282_consen 35 EGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTL-LN-----SVPSGGSSPCHIAVDPDGRFLYVANYGG 108 (345)
T ss_dssp ESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEE-EE-----EEEESSSCEEEEEECTTSSEEEEEETTT
T ss_pred CCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEE-ee-----eeccCCCCcEEEEEecCCCEEEEEEccC
Confidence 3445667899999999999876 579999988764 3222 11 11113455678999999999999874 8
Q ss_pred CeEEEEEccC-CeeeEE---ec---------cccccCeEEEEEecCCCEEEEEeC-CCcEEEEeCCCCc--ee--EEee-
Q 010362 285 GKIKVWRIRS-GQCLRR---LE---------RAHSEGVTSLVFSRDGSQILSTSF-DSTARIHGLKSGK--LL--KEFR- 345 (512)
Q Consensus 285 g~i~vwd~~~-~~~~~~---~~---------~~~~~~i~~~~~~~~~~~l~~~~~-dg~v~i~d~~~~~--~~--~~~~- 345 (512)
|+|.++++.. |..... +. ........++.|+|+++++++... ...|.+|++.... .. ..+.
T Consensus 109 g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~ 188 (345)
T PF10282_consen 109 GSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKV 188 (345)
T ss_dssp TEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEEC
T ss_pred CeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeecccc
Confidence 9999999987 443222 11 012345789999999999888754 3479999987654 32 2232
Q ss_pred CCccceeEEEEcCCCCEEEEEeC-CCcEEEEeCC--CCc--eeeecCCCCCCCCCCceeEEEEEcCCCCCeEEEEcCCCc
Q 010362 346 GHSSYVNDAIFTNDGSRVVTASS-DCTVKVWDLK--STD--CLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSS 420 (512)
Q Consensus 346 ~~~~~v~~~~~~~~~~~l~~~~~-dg~i~iwd~~--~~~--~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~ 420 (512)
......+.+.|+|+++++++..+ ++.|.++++. ++. ....+...............+.++|++..++++....+.
T Consensus 189 ~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~s 268 (345)
T PF10282_consen 189 PPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNS 268 (345)
T ss_dssp STTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTE
T ss_pred ccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCE
Confidence 23456889999999998866654 7789999988 332 222222221111122367889999999667777778889
Q ss_pred EEEEecC--CeEEEEeeCCcccCCcEEEEEECCCCCEEEEEe-CCCeEEEEEc--CCCeeEEecc-ccCCCeEEEEE
Q 010362 421 IYIMTLQ--GQVVKSFSSGKREGGDFVAACVSPKGEWIYCVG-EDRNLYCFSH--QSGKLEHLMK-VHEKDVIGVTH 491 (512)
Q Consensus 421 i~~~~~~--~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~-~dg~i~iwd~--~~~~~~~~~~-~h~~~v~~v~~ 491 (512)
|.+|+++ +..+.........+.....+.++|+|++|++++ .++.|.+|++ .+|.+...-. ..-....||.|
T Consensus 269 I~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~~~~~~~~~p~ci~f 345 (345)
T PF10282_consen 269 ISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLTPVGSSVPIPSPVCIVF 345 (345)
T ss_dssp EEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEEESSSEEEEEE
T ss_pred EEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEEEecccccCCCCEEEeC
Confidence 9999994 233333333222344578999999999999888 5678999876 5777655442 23445667765
No 233
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.63 E-value=1.1e-13 Score=119.28 Aligned_cols=293 Identities=16% Similarity=0.231 Sum_probs=192.8
Q ss_pred cCcCceEEEEECCCCCEEEEEeCCCeEEEEEcCCCeeeccccccccceeecc------------CcceeEEEEcCCCC--
Q 010362 211 GTKSHAECARFSPDGQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMH------------DETVLCIEFSRDSE-- 276 (512)
Q Consensus 211 ~h~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h------------~~~v~~l~~s~~~~-- 276 (512)
...+-|.++.|...|.+||||..+|.|.++.-..... ..+ .....+..| ...|..+.|.++++
T Consensus 23 teadiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~-~ey--~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a 99 (433)
T KOG1354|consen 23 TEADIISAVEFDHYGERLATGDKGGRVVLFEREKLYK-GEY--NFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLA 99 (433)
T ss_pred chhcceeeEEeecccceEeecCCCCeEEEeecccccc-cce--eeeeeeeccCcccchhhhhhhhhhhhhceecCCCCcc
Confidence 3445689999999999999999999999996433221 111 111122223 34689999999654
Q ss_pred eEEEEeCCCeEEEEEccCCe-----------------------------------eeEEeccccccCeEEEEEecCCCEE
Q 010362 277 MLASGSQDGKIKVWRIRSGQ-----------------------------------CLRRLERAHSEGVTSLVFSRDGSQI 321 (512)
Q Consensus 277 ~l~s~~~dg~i~vwd~~~~~-----------------------------------~~~~~~~~~~~~i~~~~~~~~~~~l 321 (512)
.++..+.|.+|++|.+.... +.+.+...|+..|.+++++.|+..+
T Consensus 100 ~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~ 179 (433)
T KOG1354|consen 100 EFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETF 179 (433)
T ss_pred EEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceE
Confidence 56777789999999875321 1223335678889999999999888
Q ss_pred EEEeCCCcEEEEeCCCCce---eEEeeCC-----ccceeEEEEcC-CCCEEEEEeCCCcEEEEeCCCCce----eeecCC
Q 010362 322 LSTSFDSTARIHGLKSGKL---LKEFRGH-----SSYVNDAIFTN-DGSRVVTASSDCTVKVWDLKSTDC----LQTFKP 388 (512)
Q Consensus 322 ~~~~~dg~v~i~d~~~~~~---~~~~~~~-----~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~----~~~~~~ 388 (512)
+++. |=.|.+|+++-... +..++.+ ...|++..|+| ..+.++..+..|+|++-|++.... ...+..
T Consensus 180 lSAD-dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEe 258 (433)
T KOG1354|consen 180 LSAD-DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEE 258 (433)
T ss_pred eecc-ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhcc
Confidence 8776 77899999864322 2223333 34588899999 456788889999999999995321 111222
Q ss_pred CCCC------CCCCceeEEEEEcCCCCCeEEEEcCCCcEEEEecC--CeEEEEeeCCccc---------C---CcEEEEE
Q 010362 389 PPPL------RGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQ--GQVVKSFSSGKRE---------G---GDFVAAC 448 (512)
Q Consensus 389 ~~~~------~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~~~~~--~~~~~~~~~~~~~---------~---~~~~~~~ 448 (512)
+... ...-.+|..+.|++.+ .+++ +..--++++||+. .+++..+..+..- . -.-..++
T Consensus 259 pedp~~rsffseiIsSISDvKFs~sG-ryil-sRDyltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~ 336 (433)
T KOG1354|consen 259 PEDPSSRSFFSEIISSISDVKFSHSG-RYIL-SRDYLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECS 336 (433)
T ss_pred ccCCcchhhHHHHhhhhhceEEccCC-cEEE-EeccceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEE
Confidence 1111 1223578889999876 4443 4445789999985 5555555443210 1 1224688
Q ss_pred ECCCCCEEEEEeCCCeEEEEEcCCCeeE--------------------Eecccc--------------CCCeEEEEEcCC
Q 010362 449 VSPKGEWIYCVGEDRNLYCFSHQSGKLE--------------------HLMKVH--------------EKDVIGVTHHPH 494 (512)
Q Consensus 449 ~s~~g~~l~~g~~dg~i~iwd~~~~~~~--------------------~~~~~h--------------~~~v~~v~~~p~ 494 (512)
|+.++.++++|+....+++|+...|... .+..+. ...+...+|||.
T Consensus 337 ~sg~~~~v~TGsy~n~frvf~~~~gsk~d~tl~asr~~~~~~~~~k~~~V~~~g~r~~~~~~vd~ldf~kkilh~aWhp~ 416 (433)
T KOG1354|consen 337 WSGNDSYVMTGSYNNVFRVFNLARGSKEDFTLEASRKNMKPRKVLKLRLVSSSGKRKRDEISVDALDFRKKILHTAWHPK 416 (433)
T ss_pred EcCCcceEecccccceEEEecCCCCcceeecccccccCCcccccccceeeecCCCccccccccchhhhhhHHHhhccCCc
Confidence 9999999999999999999995544211 000000 112556789999
Q ss_pred CCeEEEEECCCeEEEe
Q 010362 495 RNLLATYGEDCTMKLW 510 (512)
Q Consensus 495 ~~~l~s~~~dg~i~iW 510 (512)
.+.+|.+..+. +.|+
T Consensus 417 en~ia~aatnn-lyif 431 (433)
T KOG1354|consen 417 ENSIAVAATNN-LYIF 431 (433)
T ss_pred cceeeeeecCc-eEEe
Confidence 99998887654 5554
No 234
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.63 E-value=3.9e-13 Score=130.64 Aligned_cols=204 Identities=18% Similarity=0.276 Sum_probs=141.4
Q ss_pred CeEEEEEccCCeeeEEeccccccCeEEEEEecCCCEEEEEeC---CCcEEEEeCCCCceeEEeeCCccceeEEEEcCCCC
Q 010362 285 GKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSF---DSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGS 361 (512)
Q Consensus 285 g~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~ 361 (512)
..|.++|..... ...+. .+...+.+.+|+|||+.|+..+. +..|++||+.+++.. .+..+.+.+.+..|+|||+
T Consensus 182 ~~l~~~d~dg~~-~~~lt-~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~ 258 (435)
T PRK05137 182 KRLAIMDQDGAN-VRYLT-DGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPDGR 258 (435)
T ss_pred eEEEEECCCCCC-cEEEe-cCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCCCC
Confidence 378888875443 44454 56778999999999999988764 468999999887653 4455566777899999999
Q ss_pred EEE-EEeCCCc--EEEEeCCCCceeeecCCCCCCCCCCceeEEEEEcCCCCCeEEEEcCCC--cEEEEecCCeEEEEeeC
Q 010362 362 RVV-TASSDCT--VKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTS--SIYIMTLQGQVVKSFSS 436 (512)
Q Consensus 362 ~l~-~~~~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~--~i~~~~~~~~~~~~~~~ 436 (512)
.|+ +.+.+|. |.+||+.++.... +. .+........|+|++..++++...++ .|+++|..+.....+..
T Consensus 259 ~la~~~~~~g~~~Iy~~d~~~~~~~~-Lt------~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~ 331 (435)
T PRK05137 259 KVVMSLSQGGNTDIYTMDLRSGTTTR-LT------DSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRISF 331 (435)
T ss_pred EEEEEEecCCCceEEEEECCCCceEE-cc------CCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEeec
Confidence 875 4555555 7777988775432 22 12334566899999855555554444 68888888765555543
Q ss_pred CcccCCcEEEEEECCCCCEEEEEeCC---CeEEEEEcCCCeeEEeccccCCCeEEEEEcCCCCeEEEEEC
Q 010362 437 GKREGGDFVAACVSPKGEWIYCVGED---RNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPHRNLLATYGE 503 (512)
Q Consensus 437 ~~~~~~~~~~~~~s~~g~~l~~g~~d---g~i~iwd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~~~ 503 (512)
. ...+....|+|||++|+..+.+ ..|.+||..++.. ..+. ....+....|+|||++|+..+.
T Consensus 332 ~---~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt-~~~~~~~p~~spDG~~i~~~~~ 396 (435)
T PRK05137 332 G---GGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE-RILT-SGFLVEGPTWAPNGRVIMFFRQ 396 (435)
T ss_pred C---CCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCce-Eecc-CCCCCCCCeECCCCCEEEEEEc
Confidence 2 2335567899999999887643 3688899865543 3332 2234678899999998876554
No 235
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.62 E-value=5.9e-14 Score=131.96 Aligned_cols=291 Identities=15% Similarity=0.278 Sum_probs=207.9
Q ss_pred cCcCceEEEEECCCCCEEEEEeCCCeEEEEEcCCCeeec-------cccccccceeeccCcceeEEEEcCCCCeEEEEeC
Q 010362 211 GTKSHAECARFSPDGQFLVSCSFDGFIEVWDYLSGKLKK-------DLQYQADETFMMHDETVLCIEFSRDSEMLASGSQ 283 (512)
Q Consensus 211 ~h~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~-------~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~ 283 (512)
.......|++|+....++|+|+.||.++|-.+.+..... .......+++.||+..|.-+.|+.+.+.|-++..
T Consensus 12 PnnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt 91 (1189)
T KOG2041|consen 12 PNNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDT 91 (1189)
T ss_pred CCCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCC
Confidence 455678899999999999999999999999886543221 1122345688999999999999999999999999
Q ss_pred CCeEEEEEccCCeeeEEec-cccccCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCcee-EEeeCCccceeEEEEcCCCC
Q 010362 284 DGKIKVWRIRSGQCLRRLE-RAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLL-KEFRGHSSYVNDAIFTNDGS 361 (512)
Q Consensus 284 dg~i~vwd~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~-~~~~~~~~~v~~~~~~~~~~ 361 (512)
+|-|.+|-+-.|.-...+. ....+.|.+++|+.||..+.....||.|.+=.++..+.. +.+++ .....+.|++|.+
T Consensus 92 ~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg--~~l~hv~ws~D~~ 169 (1189)
T KOG2041|consen 92 SGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKG--QLLAHVLWSEDLE 169 (1189)
T ss_pred CceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcch--heccceeecccHH
Confidence 9999999998887544332 234677999999999999999999999988776433221 12222 2345789999999
Q ss_pred EEEEEeCCCcEEEEeCCCCceeeecCC------CCCCCCCCceeEEEEEc-------CCCCCeEEEEcCCCcEEEEecCC
Q 010362 362 RVVTASSDCTVKVWDLKSTDCLQTFKP------PPPLRGGDASVNSVHLF-------PKNPDHIVVCNKTSSIYIMTLQG 428 (512)
Q Consensus 362 ~l~~~~~dg~i~iwd~~~~~~~~~~~~------~~~~~~~~~~i~~~~~~-------~~~~~~l~~~~~~~~i~~~~~~~ 428 (512)
.++.+-.+|.+.+||....- ...+.. ..........+..+.|. |.+...+++|..+|.+.+....+
T Consensus 170 ~~Lf~~ange~hlydnqgnF-~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eN 248 (1189)
T KOG2041|consen 170 QALFKKANGETHLYDNQGNF-ERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSEN 248 (1189)
T ss_pred HHHhhhcCCcEEEecccccH-HHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcC
Confidence 88888889999999976421 111110 00011112235555554 22346899999999999887664
Q ss_pred eEEEEeeCCcccCCcEEEEEECCCCCEEEEEeCCC---------eEEEEEcCCCeeEEeccccCCCeEEEEEcCCCCeEE
Q 010362 429 QVVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDR---------NLYCFSHQSGKLEHLMKVHEKDVIGVTHHPHRNLLA 499 (512)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~dg---------~i~iwd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~ 499 (512)
......... +-.+..+.|+++|..+++++.+. .|++|. .-|+.+.+++.....|++++|-..|-.+|
T Consensus 249 D~~Pvv~dt---gm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fys-p~G~i~gtlkvpg~~It~lsWEg~gLriA 324 (1189)
T KOG2041|consen 249 DPEPVVVDT---GMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYS-PYGHIVGTLKVPGSCITGLSWEGTGLRIA 324 (1189)
T ss_pred CCCCeEEec---ccEeecceecCCCcEEEEccCcccccCccccceEEEec-cchhheEEEecCCceeeeeEEcCCceEEE
Confidence 332222221 23478899999999999988542 455555 45788889998999999999988777776
Q ss_pred EEECCCeEEE
Q 010362 500 TYGEDCTMKL 509 (512)
Q Consensus 500 s~~~dg~i~i 509 (512)
.+ .|+.|.+
T Consensus 325 ~A-vdsfiyf 333 (1189)
T KOG2041|consen 325 IA-VDSFIYF 333 (1189)
T ss_pred EE-ecceEEE
Confidence 55 4666654
No 236
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.62 E-value=4.8e-13 Score=125.16 Aligned_cols=271 Identities=14% Similarity=0.126 Sum_probs=171.2
Q ss_pred CEE-EEEeCCCeEEEEEcCCCeeeccccccccceeeccCcceeEEEEcCCCCeEEEEeCCCeEEEEEccCCeeeEEeccc
Q 010362 226 QFL-VSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERA 304 (512)
Q Consensus 226 ~~l-~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~ 304 (512)
+++ ++-..+|.|.+.|..+.+....+.. ....-..+.++|||+++++++.||.|.++|+.+++.+.++.
T Consensus 6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~--------~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~-- 75 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGATNKVVARIPT--------GGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIK-- 75 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT-SEEEEEE---------STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE--
T ss_pred cEEEEEecCCCEEEEEECCCCeEEEEEcC--------CCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEe--
Confidence 344 4555789999999999887776542 22334557899999999999999999999999999999986
Q ss_pred cccCeEEEEEecCCCEEEEEe-CCCcEEEEeCCCCceeEEeeCC-------ccceeEEEEcCCCCEEEEEeC-CCcEEEE
Q 010362 305 HSEGVTSLVFSRDGSQILSTS-FDSTARIHGLKSGKLLKEFRGH-------SSYVNDAIFTNDGSRVVTASS-DCTVKVW 375 (512)
Q Consensus 305 ~~~~i~~~~~~~~~~~l~~~~-~dg~v~i~d~~~~~~~~~~~~~-------~~~v~~~~~~~~~~~l~~~~~-dg~i~iw 375 (512)
-.....++++++||+++++++ ..+.+.++|.++.+.+..+... ...+..+..+|....++..-. .+.|-+.
T Consensus 76 ~G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vV 155 (369)
T PF02239_consen 76 VGGNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVV 155 (369)
T ss_dssp -SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEE
T ss_pred cCCCcceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEE
Confidence 345578899999999998776 5789999999999999887643 345778888888886665554 4778888
Q ss_pred eCCCCceeeecCCCCCCCCCCceeEEEEEcCCCCCeEEEEcCCCcEEEEecCCeEE-EEeeCCc-ccCCcEEEE------
Q 010362 376 DLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQVV-KSFSSGK-REGGDFVAA------ 447 (512)
Q Consensus 376 d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~-~~~~~~~-~~~~~~~~~------ 447 (512)
|....+....-.. ..........|.|++..++++...+..+.++|...... .....+. .+..+...+
T Consensus 156 dy~d~~~~~~~~i-----~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g 230 (369)
T PF02239_consen 156 DYSDPKNLKVTTI-----KVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFG 230 (369)
T ss_dssp ETTTSSCEEEEEE-----E--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTE
T ss_pred Eeccccccceeee-----cccccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcc
Confidence 8776543321110 12234567899999866677778888999999985433 3333221 122222221
Q ss_pred -EE--CCCCCEEEEEeCCCeEEEEEcCCCeeEEeccccCCCeEEEEEcCCCCeEEEE----ECCCeEEEecC
Q 010362 448 -CV--SPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPHRNLLATY----GEDCTMKLWKP 512 (512)
Q Consensus 448 -~~--s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~----~~dg~i~iW~~ 512 (512)
.| +..+...++.-..+.+.+||..+.+.++.+.....+ ..+..||+++++... ...++|.++|.
T Consensus 231 ~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~ 301 (369)
T PF02239_consen 231 PVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDK 301 (369)
T ss_dssp EEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEEC
T ss_pred eEEeeccccceecccccCCccccchhhcCeEEEEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEEC
Confidence 11 122233322223345667888889999999877666 788899999999887 44578888773
No 237
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.61 E-value=1.8e-14 Score=119.47 Aligned_cols=268 Identities=13% Similarity=0.115 Sum_probs=180.8
Q ss_pred eccCcccccccccccCccccceEEEecCcCceEEEEECCCCCEEEEEeCCCeEEEEEcCCCeeeccccccccceeeccCc
Q 010362 185 LFRGTAAMKQDVEDMYPTTLSHTIKFGTKSHAECARFSPDGQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHDE 264 (512)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~ 264 (512)
++.|...+....|+.........++..|+..|+.+.--|+ +.+.+-+.|+.+.+|++..+..+.. |.-
T Consensus 28 L~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ia~s~~i~i-----------~Si 95 (323)
T KOG0322|consen 28 LMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILWTIAYSAFISI-----------HSI 95 (323)
T ss_pred hhcccccceEEEEEeecCccchhhhhhccceeeceeecCC-cchhhcCCCceEEEEEccCcceEEE-----------eee
Confidence 4555666667778888887777787788899999999998 5678888999999999987554321 444
Q ss_pred ceeEEEEcCC-----C----CeEEEEeCCC-eEEEEEccCCeeeEEec---cccccCeEEEEEec-CCC--EEEEEeCCC
Q 010362 265 TVLCIEFSRD-----S----EMLASGSQDG-KIKVWRIRSGQCLRRLE---RAHSEGVTSLVFSR-DGS--QILSTSFDS 328 (512)
Q Consensus 265 ~v~~l~~s~~-----~----~~l~s~~~dg-~i~vwd~~~~~~~~~~~---~~~~~~i~~~~~~~-~~~--~l~~~~~dg 328 (512)
.++++.|.+. + ..++.-+... .+.+-|......+.... .+..+.+.+..+.. +++ .+++|..+|
T Consensus 96 ~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsg 175 (323)
T KOG0322|consen 96 VVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESG 175 (323)
T ss_pred eccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccccccceEEEEEeccCC
Confidence 5555555542 1 1111111110 01222221111111111 12345666766533 333 456788899
Q ss_pred cEEEEeCCCCc----------eeEEeeCCccceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeecCCCCCCCCCCce
Q 010362 329 TARIHGLKSGK----------LLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDAS 398 (512)
Q Consensus 329 ~v~i~d~~~~~----------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 398 (512)
.+.+||+.++. .......|..+|.++.+.+....=++|+.+..+..|++....... +......-..-.
T Consensus 176 hvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gsl--q~~~e~~lknpG 253 (323)
T KOG0322|consen 176 HVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSL--QIRKEITLKNPG 253 (323)
T ss_pred eEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcc--cccceEEecCCC
Confidence 99999999873 333445689999999999877777888888899999887532111 111111122345
Q ss_pred eEEEEEcCCCCCeEEEEcCCCcEEEEecC-CeEEEEeeCCcccCCcEEEEEECCCCCEEEEEeCCCeEEEEEc
Q 010362 399 VNSVHLFPKNPDHIVVCNKTSSIYIMTLQ-GQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSH 470 (512)
Q Consensus 399 i~~~~~~~~~~~~l~~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~dg~i~iwd~ 470 (512)
+..+.+-|++ +.+++++.|++|++|..+ .+++..+..+ ...+.+++|+|+...+++++.|+.|.+|++
T Consensus 254 v~gvrIRpD~-KIlATAGWD~RiRVyswrtl~pLAVLkyH---sagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 254 VSGVRIRPDG-KILATAGWDHRIRVYSWRTLNPLAVLKYH---SAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred ccceEEccCC-cEEeecccCCcEEEEEeccCCchhhhhhh---hcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 7788888988 999999999999999998 4555555443 467999999999999999999999999986
No 238
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.60 E-value=3.7e-13 Score=123.15 Aligned_cols=277 Identities=17% Similarity=0.202 Sum_probs=176.0
Q ss_pred eEEEEECCCCCEEEEEeCCCeEEEEEcCCCeeeccccccccceeeccCcceeEEEEcCCCCeEEEEeC-----------C
Q 010362 216 AECARFSPDGQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQ-----------D 284 (512)
Q Consensus 216 v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~-----------d 284 (512)
-+-+.|||.|.||+|-..-| |.+|--.+-...+.+. | ..|.-+.|||+.+||+|=+. .
T Consensus 213 etyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~---------H-p~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~ 281 (698)
T KOG2314|consen 213 ETYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRFY---------H-PGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEG 281 (698)
T ss_pred eeeEEecCCceEEEEEeccc-eeeecCccHHHHHhcc---------C-CCceeeecCCccceEEEecCCccccCcccCCC
Confidence 45689999999999988666 8899654433333332 4 46899999999999998653 2
Q ss_pred CeEEEEEccCCeeeEEeccc--cccCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeeCCccceeEEEEcCCCCE
Q 010362 285 GKIKVWRIRSGQCLRRLERA--HSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSR 362 (512)
Q Consensus 285 g~i~vwd~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 362 (512)
..++|||+.+|...+.+... ....-.-+.||.|++++|.-.. ..|.||+..+..++..-.-.-..|....|+|.++.
T Consensus 282 ~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~l 360 (698)
T KOG2314|consen 282 QQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSFMLLDKKSLKISGIRDFSWSPTSNL 360 (698)
T ss_pred ceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEecc-ceEEEEecCceeeecccccCCccccCcccCCCcce
Confidence 47999999999988888632 2222345789999999988775 57889987664443322223445778888888776
Q ss_pred EEEEeCC-----CcEEEEeCCCCceeeec------------------------CC----------------------CCC
Q 010362 363 VVTASSD-----CTVKVWDLKSTDCLQTF------------------------KP----------------------PPP 391 (512)
Q Consensus 363 l~~~~~d-----g~i~iwd~~~~~~~~~~------------------------~~----------------------~~~ 391 (512)
|+-=+.. ..+.+-.+.+++.+++- .. +..
T Consensus 361 lAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve 440 (698)
T KOG2314|consen 361 LAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVE 440 (698)
T ss_pred EEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCce
Confidence 6642210 11222222111111100 00 000
Q ss_pred CCCCCceeEEEEEcCCCCCeEEEEcCC--CcEEEEecCCeE--EEEeeCCcccCCcEEEEEECCCCCEEEEEe---CCCe
Q 010362 392 LRGGDASVNSVHLFPKNPDHIVVCNKT--SSIYIMTLQGQV--VKSFSSGKREGGDFVAACVSPKGEWIYCVG---EDRN 464 (512)
Q Consensus 392 ~~~~~~~i~~~~~~~~~~~~l~~~~~~--~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~---~dg~ 464 (512)
.......+...+|-|.+..+.+..+.+ .++.+|.+.... ....... .....+.+.|+|.|++++.++ ..|.
T Consensus 441 ~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~--dk~~~N~vfwsPkG~fvvva~l~s~~g~ 518 (698)
T KOG2314|consen 441 VVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKEL--DKKFANTVFWSPKGRFVVVAALVSRRGD 518 (698)
T ss_pred eeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhh--cccccceEEEcCCCcEEEEEEecccccc
Confidence 112235677888999986665555443 457777766321 1111111 124567899999999998875 5789
Q ss_pred EEEEEcCCCeeEEeccccCCCeEEEEEcCCCCeEEEEECCCe
Q 010362 465 LYCFSHQSGKLEHLMKVHEKDVIGVTHHPHRNLLATYGEDCT 506 (512)
Q Consensus 465 i~iwd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~~~dg~ 506 (512)
+.++|.....+..+-.......+.+.|.|.|+++++++.-+.
T Consensus 519 l~F~D~~~a~~k~~~~~eh~~at~veWDPtGRYvvT~ss~wr 560 (698)
T KOG2314|consen 519 LEFYDTDYADLKDTASPEHFAATEVEWDPTGRYVVTSSSSWR 560 (698)
T ss_pred eEEEecchhhhhhccCccccccccceECCCCCEEEEeeehhh
Confidence 999998754433332222345678999999999999986443
No 239
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.60 E-value=8.1e-13 Score=128.11 Aligned_cols=235 Identities=16% Similarity=0.162 Sum_probs=151.9
Q ss_pred eEEEEEcCCCeeeccccccccceeeccCcceeEEEEcCCCCeEEEEeCC---CeEEEEEccCCeeeEEeccccccCeEEE
Q 010362 236 FIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQD---GKIKVWRIRSGQCLRRLERAHSEGVTSL 312 (512)
Q Consensus 236 ~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d---g~i~vwd~~~~~~~~~~~~~~~~~i~~~ 312 (512)
.|.++|.+..... .+..+...+.+..|+|||+.|+..+.+ ..|.+||+.+++... +. .........
T Consensus 199 ~l~i~d~dG~~~~---------~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt-~~~g~~~~~ 267 (448)
T PRK04792 199 QLMIADYDGYNEQ---------MLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VT-SFPGINGAP 267 (448)
T ss_pred EEEEEeCCCCCce---------EeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ec-CCCCCcCCe
Confidence 5666776544321 122366788999999999999877543 258899998876533 22 223344578
Q ss_pred EEecCCCEEEE-EeCCCc--EEEEeCCCCceeEEeeCCccceeEEEEcCCCCEEEEEeC-CC--cEEEEeCCCCceeeec
Q 010362 313 VFSRDGSQILS-TSFDST--ARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASS-DC--TVKVWDLKSTDCLQTF 386 (512)
Q Consensus 313 ~~~~~~~~l~~-~~~dg~--v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg--~i~iwd~~~~~~~~~~ 386 (512)
.|+|||+.|+. .+.+|. |+++|+.+++. ..+..+........|+|||+.++..+. +| .|.++|+.+++....
T Consensus 268 ~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~-~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~L- 345 (448)
T PRK04792 268 RFSPDGKKLALVLSKDGQPEIYVVDIATKAL-TRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRL- 345 (448)
T ss_pred eECCCCCEEEEEEeCCCCeEEEEEECCCCCe-EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEE-
Confidence 99999998875 455664 88889877654 344445555678899999998876554 34 466678777654322
Q ss_pred CCCCCCCCCCceeEEEEEcCCCCCeEEEEcCCC--cEEEEecCCeEEEEeeCCcccCCcEEEEEECCCCCEEEEEeCC-C
Q 010362 387 KPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTS--SIYIMTLQGQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGED-R 463 (512)
Q Consensus 387 ~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~--~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d-g 463 (512)
... ........|+|++..++++...++ .|.++|+.+.....+..... .....|+|||+.|+..+.+ |
T Consensus 346 t~~------g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~lt~~~~----d~~ps~spdG~~I~~~~~~~g 415 (448)
T PRK04792 346 TFE------GEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQVLTSTRL----DESPSVAPNGTMVIYSTTYQG 415 (448)
T ss_pred ecC------CCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeEEccCCCC----CCCceECCCCCEEEEEEecCC
Confidence 111 112234689999855555555455 45567777555444433211 1234799999998876643 3
Q ss_pred --eEEEEEcCCCeeEEeccccCCCeEEEEEcCC
Q 010362 464 --NLYCFSHQSGKLEHLMKVHEKDVIGVTHHPH 494 (512)
Q Consensus 464 --~i~iwd~~~~~~~~~~~~h~~~v~~v~~~p~ 494 (512)
.+++++. +|.....+..+.+.+...+|+|-
T Consensus 416 ~~~l~~~~~-~G~~~~~l~~~~g~~~~p~Wsp~ 447 (448)
T PRK04792 416 KQVLAAVSI-DGRFKARLPAGQGEVKSPAWSPF 447 (448)
T ss_pred ceEEEEEEC-CCCceEECcCCCCCcCCCccCCC
Confidence 3777886 56666677666677888899873
No 240
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.60 E-value=1.1e-12 Score=127.72 Aligned_cols=235 Identities=16% Similarity=0.180 Sum_probs=154.3
Q ss_pred eEEEEEcCCCeeeccccccccceeeccCcceeEEEEcCCCCeEEEEeCC---CeEEEEEccCCeeeEEeccccccCeEEE
Q 010362 236 FIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQD---GKIKVWRIRSGQCLRRLERAHSEGVTSL 312 (512)
Q Consensus 236 ~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d---g~i~vwd~~~~~~~~~~~~~~~~~i~~~ 312 (512)
.|.++|.+.+... .+..+...+...+|+|||+.|+..+.+ ..|.+||+.+++... +. ...+.+...
T Consensus 180 ~l~~~d~~g~~~~---------~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~-~~~g~~~~~ 248 (430)
T PRK00178 180 TLQRSDYDGARAV---------TLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-IT-NFEGLNGAP 248 (430)
T ss_pred EEEEECCCCCCce---------EEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-cc-CCCCCcCCe
Confidence 4777777654322 122366788999999999999887644 369999998887543 22 234455678
Q ss_pred EEecCCCEEEE-EeCCC--cEEEEeCCCCceeEEeeCCccceeEEEEcCCCCEEEEEeC-CC--cEEEEeCCCCceeeec
Q 010362 313 VFSRDGSQILS-TSFDS--TARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASS-DC--TVKVWDLKSTDCLQTF 386 (512)
Q Consensus 313 ~~~~~~~~l~~-~~~dg--~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg--~i~iwd~~~~~~~~~~ 386 (512)
.|+|||+.|+. .+.+| .|++||+.+++.. .+..+........|+|||+.++..+. +| .|.++|+.+++....
T Consensus 249 ~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~-~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~l- 326 (430)
T PRK00178 249 AWSPDGSKLAFVLSKDGNPEIYVMDLASRQLS-RVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERV- 326 (430)
T ss_pred EECCCCCEEEEEEccCCCceEEEEECCCCCeE-EcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEe-
Confidence 99999998874 44444 6888899877643 45555556677899999998776654 33 577778877664322
Q ss_pred CCCCCCCCCCceeEEEEEcCCCCCeEEEEcCCC--cEEEEecCCeEEEEeeCCcccCCcEEEEEECCCCCEEEEEeCC--
Q 010362 387 KPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTS--SIYIMTLQGQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGED-- 462 (512)
Q Consensus 387 ~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~--~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d-- 462 (512)
... ........|+|++..++++...++ .|.++|+.+.....+..... .....|+|||+.++..+.+
T Consensus 327 t~~------~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~lt~~~~----~~~p~~spdg~~i~~~~~~~g 396 (430)
T PRK00178 327 TFV------GNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRILTDTSL----DESPSVAPNGTMLIYATRQQG 396 (430)
T ss_pred ecC------CCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEEEccCCCC----CCCceECCCCCEEEEEEecCC
Confidence 111 112235679999855555544444 47888888655555443221 1245899999999887743
Q ss_pred -CeEEEEEcCCCeeEEeccccCCCeEEEEEcCC
Q 010362 463 -RNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPH 494 (512)
Q Consensus 463 -g~i~iwd~~~~~~~~~~~~h~~~v~~v~~~p~ 494 (512)
..+++++.. |.....+..+.+.+...+|+|-
T Consensus 397 ~~~l~~~~~~-g~~~~~l~~~~g~~~~p~ws~~ 428 (430)
T PRK00178 397 RGVLMLVSIN-GRVRLPLPTAQGEVREPSWSPY 428 (430)
T ss_pred ceEEEEEECC-CCceEECcCCCCCcCCCccCCC
Confidence 357777875 4444455556667778888873
No 241
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.60 E-value=2.2e-13 Score=131.70 Aligned_cols=218 Identities=22% Similarity=0.265 Sum_probs=141.5
Q ss_pred cCcCceEEEEECCCCCEEEEEeCC---CeEEEEEcCCCeeeccccccccceeeccCcceeEEEEcCCCCeEEE-EeCCCe
Q 010362 211 GTKSHAECARFSPDGQFLVSCSFD---GFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLAS-GSQDGK 286 (512)
Q Consensus 211 ~h~~~v~~~~~s~~~~~l~sg~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s-~~~dg~ 286 (512)
.+...+.+.+|||||+.|+..+.+ ..|.+||+.+++.... ....+.+.+.+|+|||+.|+. .+.+|.
T Consensus 193 ~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l---------~~~~g~~~~~~~SPDG~~la~~~~~~g~ 263 (427)
T PRK02889 193 SSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVV---------ANFKGSNSAPAWSPDGRTLAVALSRDGN 263 (427)
T ss_pred cCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEe---------ecCCCCccceEECCCCCEEEEEEccCCC
Confidence 677789999999999999987643 3699999988764321 113345668999999998874 567787
Q ss_pred EEEEEc--cCCeeeEEeccccccCeEEEEEecCCCEEEEEeC-CCcEEEE--eCCCCceeEEeeCCccceeEEEEcCCCC
Q 010362 287 IKVWRI--RSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSF-DSTARIH--GLKSGKLLKEFRGHSSYVNDAIFTNDGS 361 (512)
Q Consensus 287 i~vwd~--~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~v~i~--d~~~~~~~~~~~~~~~~v~~~~~~~~~~ 361 (512)
..+|.+ .++. ...+. .+........|+|||+.|+..+. +|...+| +..+++. ..+..+........|+|+|+
T Consensus 264 ~~Iy~~d~~~~~-~~~lt-~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~-~~lt~~g~~~~~~~~SpDG~ 340 (427)
T PRK02889 264 SQIYTVNADGSG-LRRLT-QSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAA-QRVTFTGSYNTSPRISPDGK 340 (427)
T ss_pred ceEEEEECCCCC-cEECC-CCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCce-EEEecCCCCcCceEECCCCC
Confidence 666654 4444 44443 34455677899999998887664 4555555 4444443 22222223345678999999
Q ss_pred EEEEEeCCC---cEEEEeCCCCceeeecCCCCCCCCCCceeEEEEEcCCCCCeEEEEcCCCc--EEEEecCCeEEEEeeC
Q 010362 362 RVVTASSDC---TVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSS--IYIMTLQGQVVKSFSS 436 (512)
Q Consensus 362 ~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~--i~~~~~~~~~~~~~~~ 436 (512)
+++..+.++ .|.+||+.+++... +... .......|+|++..++++....+. +++.+..+.....+..
T Consensus 341 ~Ia~~s~~~g~~~I~v~d~~~g~~~~-lt~~-------~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~~g~~~~~l~~ 412 (427)
T PRK02889 341 LLAYISRVGGAFKLYVQDLATGQVTA-LTDT-------TRDESPSFAPNGRYILYATQQGGRSVLAAVSSDGRIKQRLSV 412 (427)
T ss_pred EEEEEEccCCcEEEEEEECCCCCeEE-ccCC-------CCccCceECCCCCEEEEEEecCCCEEEEEEECCCCceEEeec
Confidence 998777654 59999998876432 2211 123567899999666666655544 5555666655444432
Q ss_pred CcccCCcEEEEEECC
Q 010362 437 GKREGGDFVAACVSP 451 (512)
Q Consensus 437 ~~~~~~~~~~~~~s~ 451 (512)
. .+.+...+|+|
T Consensus 413 ~---~g~~~~p~wsp 424 (427)
T PRK02889 413 Q---GGDVREPSWGP 424 (427)
T ss_pred C---CCCCCCCccCC
Confidence 1 23345566665
No 242
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.58 E-value=4.2e-13 Score=113.96 Aligned_cols=157 Identities=16% Similarity=0.305 Sum_probs=114.7
Q ss_pred eeEEEEcCCCCeEEEEeC----------CCeEEEEEccC-CeeeEEeccccccCeEEEEEecCCCEEEEE--eCCCcEEE
Q 010362 266 VLCIEFSRDSEMLASGSQ----------DGKIKVWRIRS-GQCLRRLERAHSEGVTSLVFSRDGSQILST--SFDSTARI 332 (512)
Q Consensus 266 v~~l~~s~~~~~l~s~~~----------dg~i~vwd~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~--~~dg~v~i 332 (512)
=..+.|+|+|++|+.-.. -|...+|.++. +.....+.....++|.+++|+|+|+.|++. ..++.|.+
T Consensus 8 ~~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~l 87 (194)
T PF08662_consen 8 DAKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTL 87 (194)
T ss_pred eEEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEE
Confidence 346789999988775433 13455665532 334445543455679999999999987654 45679999
Q ss_pred EeCCCCceeEEeeCCccceeEEEEcCCCCEEEEEeC---CCcEEEEeCCCCceeeecCCCCCCCCCCceeEEEEEcCCCC
Q 010362 333 HGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASS---DCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNP 409 (512)
Q Consensus 333 ~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 409 (512)
||++ ++.+..+. ...++.+.|+|+|+++++++. .|.|.+||.++.+.+.... ...++.+.|+|++
T Consensus 88 yd~~-~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~--------~~~~t~~~WsPdG- 155 (194)
T PF08662_consen 88 YDVK-GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE--------HSDATDVEWSPDG- 155 (194)
T ss_pred EcCc-ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc--------cCcEEEEEEcCCC-
Confidence 9996 66666664 456889999999999999875 4679999999888776654 2246899999999
Q ss_pred CeEEEEcC------CCcEEEEecCCeEEEEe
Q 010362 410 DHIVVCNK------TSSIYIMTLQGQVVKSF 434 (512)
Q Consensus 410 ~~l~~~~~------~~~i~~~~~~~~~~~~~ 434 (512)
.+++++.. |..+.+|+..|+.+...
T Consensus 156 r~~~ta~t~~r~~~dng~~Iw~~~G~~l~~~ 186 (194)
T PF08662_consen 156 RYLATATTSPRLRVDNGFKIWSFQGRLLYKK 186 (194)
T ss_pred CEEEEEEeccceeccccEEEEEecCeEeEec
Confidence 55555543 78899999998866554
No 243
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.58 E-value=2.9e-12 Score=124.80 Aligned_cols=232 Identities=19% Similarity=0.205 Sum_probs=151.4
Q ss_pred CeEEEEEcCCCeeeccccccccceeeccCcceeEEEEcCCCCeEEEEeCC---CeEEEEEccCCeeeEEeccccccCeEE
Q 010362 235 GFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQD---GKIKVWRIRSGQCLRRLERAHSEGVTS 311 (512)
Q Consensus 235 g~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d---g~i~vwd~~~~~~~~~~~~~~~~~i~~ 311 (512)
..|.++|....... .+..+...+...+|+|||++|+.++.+ ..|++||+.+++..... .+...+.+
T Consensus 170 ~~l~~~d~~g~~~~---------~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~--~~~~~~~~ 238 (417)
T TIGR02800 170 YELQVADYDGANPQ---------TITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVA--SFPGMNGA 238 (417)
T ss_pred ceEEEEcCCCCCCE---------EeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEee--cCCCCccc
Confidence 35778876543321 233366678899999999999988654 47999999988654332 34556778
Q ss_pred EEEecCCCEEEEE-eCCC--cEEEEeCCCCceeEEeeCCccceeEEEEcCCCCEEEEEeC-CC--cEEEEeCCCCceeee
Q 010362 312 LVFSRDGSQILST-SFDS--TARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASS-DC--TVKVWDLKSTDCLQT 385 (512)
Q Consensus 312 ~~~~~~~~~l~~~-~~dg--~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg--~i~iwd~~~~~~~~~ 385 (512)
++|+|||+.|+.. +.++ .|++||+.++.. ..+..+........|+|+|+.|+.++. ++ .|.++|+.+++...
T Consensus 239 ~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~- 316 (417)
T TIGR02800 239 PAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQL-TRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRR- 316 (417)
T ss_pred eEECCCCCEEEEEECCCCCccEEEEECCCCCE-EECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-
Confidence 9999999987654 4443 589999977654 334445555567899999998876654 33 57778887665332
Q ss_pred cCCCCCCCCCCceeEEEEEcCCCCCeEEEEcCCC---cEEEEecCCeEEEEeeCCcccCCcEEEEEECCCCCEEEEEeCC
Q 010362 386 FKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTS---SIYIMTLQGQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGED 462 (512)
Q Consensus 386 ~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~---~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d 462 (512)
+. ..........|+|++ ..++.+..++ .|.++|+.+.....+.... ......|+|||++|+..+.+
T Consensus 317 l~------~~~~~~~~~~~spdg-~~i~~~~~~~~~~~i~~~d~~~~~~~~l~~~~----~~~~p~~spdg~~l~~~~~~ 385 (417)
T TIGR02800 317 LT------FRGGYNASPSWSPDG-DLIAFVHREGGGFNIAVMDLDGGGERVLTDTG----LDESPSFAPNGRMILYATTR 385 (417)
T ss_pred ee------cCCCCccCeEECCCC-CEEEEEEccCCceEEEEEeCCCCCeEEccCCC----CCCCceECCCCCEEEEEEeC
Confidence 21 122345677899988 5555555554 7888888765444443321 12346899999999888755
Q ss_pred C---eEEEEEcCCCeeEEeccccCCCeEEEEE
Q 010362 463 R---NLYCFSHQSGKLEHLMKVHEKDVIGVTH 491 (512)
Q Consensus 463 g---~i~iwd~~~~~~~~~~~~h~~~v~~v~~ 491 (512)
+ .+++.+. ++.....+..+.+.+...+|
T Consensus 386 ~~~~~l~~~~~-~g~~~~~~~~~~g~~~~~~w 416 (417)
T TIGR02800 386 GGRGVLGLVST-DGRFRARLPLGNGDVREPAW 416 (417)
T ss_pred CCcEEEEEEEC-CCceeeECCCCCCCcCCCCC
Confidence 4 4556554 45555555544555555555
No 244
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.56 E-value=1.4e-12 Score=120.64 Aligned_cols=194 Identities=18% Similarity=0.309 Sum_probs=158.3
Q ss_pred CCCCCEEEEEeCCCeEEEEEcCCCeeeccccccccceeeccCcceeEEEEc------C--------------CCCeEEEE
Q 010362 222 SPDGQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFS------R--------------DSEMLASG 281 (512)
Q Consensus 222 s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s------~--------------~~~~l~s~ 281 (512)
.|.+.++|..+.||.++||+...++....+.... . -.+..++..|. | +...++-|
T Consensus 2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~--~---~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlg 76 (541)
T KOG4547|consen 2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFAPIA--S---LSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLG 76 (541)
T ss_pred CchhheEeecCCCCeEEEEEccCceeeeeeccch--h---ccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEee
Confidence 4567899999999999999999988776654221 1 23344455542 2 44568888
Q ss_pred eCCCeEEEEEccCCeeeEEec-cccccCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeeCCccceeEEEEcCCC
Q 010362 282 SQDGKIKVWRIRSGQCLRRLE-RAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDG 360 (512)
Q Consensus 282 ~~dg~i~vwd~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~ 360 (512)
...|.|.+|++..|+...++. ..|.+.|.++.++.+-..|.+++.|+.+..|+..+.+.++.++..+..+.+++.+|||
T Consensus 77 t~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~ 156 (541)
T KOG4547|consen 77 TPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDG 156 (541)
T ss_pred cCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCC
Confidence 889999999999999888877 6789999999999999999999999999999999999999999988899999999999
Q ss_pred CEEEEEeCCCcEEEEeCCCCceeeecCCCCCCCCCCceeEEEEEcCC-----CCCeEEEEcCCCcEEEEecCC
Q 010362 361 SRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPK-----NPDHIVVCNKTSSIYIMTLQG 428 (512)
Q Consensus 361 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-----~~~~l~~~~~~~~i~~~~~~~ 428 (512)
..+++++ +.|++||+.+++.+.+|. +|.++|.++.|... +..++.+...+..+.+|-.++
T Consensus 157 ~~l~~as--~~ik~~~~~~kevv~~ft------gh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 157 KILLTAS--RQIKVLDIETKEVVITFT------GHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred CEEEecc--ceEEEEEccCceEEEEec------CCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 9999987 579999999999999987 78889999988765 434455555666677777653
No 245
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.56 E-value=8.5e-13 Score=115.82 Aligned_cols=223 Identities=13% Similarity=0.204 Sum_probs=156.7
Q ss_pred cCceEEEEECCCCCEEEEEeCCCeEEEEEcCCCeeeccccccccceeeccCcceeEEEEcCCC-CeEEEEeCC--CeEEE
Q 010362 213 KSHAECARFSPDGQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDS-EMLASGSQD--GKIKV 289 (512)
Q Consensus 213 ~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~-~~l~s~~~d--g~i~v 289 (512)
+..|..++.. ...|++|-.+|.+.+|....+..... +...+. ....+..+.-++.. .++++|+.. ..+.+
T Consensus 105 ~~~I~gl~~~--dg~Litc~~sG~l~~~~~k~~d~hss----~l~~la-~g~g~~~~r~~~~~p~Iva~GGke~~n~lki 177 (412)
T KOG3881|consen 105 TKSIKGLKLA--DGTLITCVSSGNLQVRHDKSGDLHSS----KLIKLA-TGPGLYDVRQTDTDPYIVATGGKENINELKI 177 (412)
T ss_pred cccccchhhc--CCEEEEEecCCcEEEEeccCCccccc----cceeee-cCCceeeeccCCCCCceEecCchhcccceee
Confidence 3444444432 33677888899999999875543211 011111 22456666666644 456668888 88999
Q ss_pred EEccCCeeeEEecccc--------ccCeEEEEEecC--CCEEEEEeCCCcEEEEeCCCC-ceeEEeeCCccceeEEEEcC
Q 010362 290 WRIRSGQCLRRLERAH--------SEGVTSLVFSRD--GSQILSTSFDSTARIHGLKSG-KLLKEFRGHSSYVNDAIFTN 358 (512)
Q Consensus 290 wd~~~~~~~~~~~~~~--------~~~i~~~~~~~~--~~~l~~~~~dg~v~i~d~~~~-~~~~~~~~~~~~v~~~~~~~ 358 (512)
||++..+.+.+-.... +-.++++.|.+. ...|++++.-+.+++||.+.+ +++..+.-...+++++...|
T Consensus 178 wdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p 257 (412)
T KOG3881|consen 178 WDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTP 257 (412)
T ss_pred eecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecC
Confidence 9999886665543211 234678889887 889999999999999999866 56788887888999999999
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCceeeecCCCCCCCCCCceeEEEEEcCCCCCeEEEEcCCCcEEEEecCCeEEEEeeCCc
Q 010362 359 DGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQVVKSFSSGK 438 (512)
Q Consensus 359 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~ 438 (512)
+++++++|..-|.+..||++.++...... .+
T Consensus 258 ~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~-----kg-------------------------------------------- 288 (412)
T KOG3881|consen 258 SGNFIYTGNTKGQLAKFDLRGGKLLGCGL-----KG-------------------------------------------- 288 (412)
T ss_pred CCcEEEEecccchhheecccCceeecccc-----CC--------------------------------------------
Confidence 99999999999999999999876544311 11
Q ss_pred ccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCeeEEeccccCCCeEEEEEcC
Q 010362 439 REGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHP 493 (512)
Q Consensus 439 ~~~~~~~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~p 493 (512)
..+.+.++..+|.+++++++|-|..|+|+|+.+.+++.... -...++++.+.+
T Consensus 289 -~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvY-vKs~lt~il~~~ 341 (412)
T KOG3881|consen 289 -ITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVY-VKSRLTFILLRD 341 (412)
T ss_pred -ccCCcceEEEcCCCceEEeeccceeEEEeecccchhhhhhh-hhccccEEEecC
Confidence 13446677777778888888888888888888866664432 234455666654
No 246
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.55 E-value=3.7e-11 Score=109.70 Aligned_cols=259 Identities=11% Similarity=0.091 Sum_probs=163.7
Q ss_pred CeEEEEEcCCCeeeccccccccceeeccCcceeEEEEcCCCCeEEEEeC----------CCeEEEEEccCCeeeEEeccc
Q 010362 235 GFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQ----------DGKIKVWRIRSGQCLRRLERA 304 (512)
Q Consensus 235 g~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~----------dg~i~vwd~~~~~~~~~~~~~ 304 (512)
++|.+.|..+++.+..+... ..-..+ ++||++.|+++.. +..|.+||..+.+.+..+..+
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G---------~~P~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p 96 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGG---------FLPNPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELP 96 (352)
T ss_pred ceEEEEECCCCEEEEEEEcc---------CCCcee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccC
Confidence 89999999998887765531 122234 9999998888765 689999999999999888632
Q ss_pred cc------cCeEEEEEecCCCEEEEEeC--CCcEEEEeCCCCceeEEeeCCccceeEEEEcCCCCEEEEEeCCCcEEEEe
Q 010362 305 HS------EGVTSLVFSRDGSQILSTSF--DSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWD 376 (512)
Q Consensus 305 ~~------~~i~~~~~~~~~~~l~~~~~--dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd 376 (512)
.. .....++++|||+++++... +..|.+.|+.+++.+.++.-... ..-...+++ ..+ +-+.||......
T Consensus 97 ~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~-~~vy~t~e~-~~~-~~~~Dg~~~~v~ 173 (352)
T TIGR02658 97 EGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDC-YHIFPTAND-TFF-MHCRDGSLAKVG 173 (352)
T ss_pred CCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCC-cEEEEecCC-ccE-EEeecCceEEEE
Confidence 11 22347899999999998763 68999999999999988875221 111122222 222 223344444433
Q ss_pred CCCCceeeecCCCC----CCCCCCceeEEEEEcCCCCCeEEEEcCCCcEEEEecCCeEE------EEeeCCc----ccCC
Q 010362 377 LKSTDCLQTFKPPP----PLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQVV------KSFSSGK----REGG 442 (512)
Q Consensus 377 ~~~~~~~~~~~~~~----~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~------~~~~~~~----~~~~ 442 (512)
+.+......-..+. ...-...+ .+.+.+...+.+... |.+++.|+.+... ..+.... -..+
T Consensus 174 ~d~~g~~~~~~~~vf~~~~~~v~~rP----~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~ 248 (352)
T TIGR02658 174 YGTKGNPKIKPTEVFHPEDEYLINHP----AYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPG 248 (352)
T ss_pred ecCCCceEEeeeeeecCCccccccCC----ceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCC
Confidence 32211111100000 00000111 335533355555555 9999999753321 1111110 0122
Q ss_pred cEEEEEECCCCCEEEEEe----------CCCeEEEEEcCCCeeEEeccccCCCeEEEEEcCCCC-eEEEEE-CCCeEEEe
Q 010362 443 DFVAACVSPKGEWIYCVG----------EDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPHRN-LLATYG-EDCTMKLW 510 (512)
Q Consensus 443 ~~~~~~~s~~g~~l~~g~----------~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~p~~~-~l~s~~-~dg~i~iW 510 (512)
.+.-++++++|+.+++.. ..+.|.++|..+++.+..+.. ...+..++++||++ +|++.. .++.|.+.
T Consensus 249 g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~v-G~~~~~iavS~Dgkp~lyvtn~~s~~VsVi 327 (352)
T TIGR02658 249 GWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIEL-GHEIDSINVSQDAKPLLYALSTGDKTLYIF 327 (352)
T ss_pred cceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeC-CCceeeEEECCCCCeEEEEeCCCCCcEEEE
Confidence 334499999999998843 225799999999999988874 45789999999998 777665 67889888
Q ss_pred cC
Q 010362 511 KP 512 (512)
Q Consensus 511 ~~ 512 (512)
|+
T Consensus 328 D~ 329 (352)
T TIGR02658 328 DA 329 (352)
T ss_pred EC
Confidence 74
No 247
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.53 E-value=1.6e-12 Score=112.23 Aligned_cols=294 Identities=19% Similarity=0.304 Sum_probs=192.1
Q ss_pred ccceEEEecCcCceEEEEECCCCCEEEEEeCCCeEEEEEc-CCCeeeccccccccceeeccCcceeEEEEcCCCCeEEEE
Q 010362 203 TLSHTIKFGTKSHAECARFSPDGQFLVSCSFDGFIEVWDY-LSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASG 281 (512)
Q Consensus 203 ~~~~~~~~~h~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~-~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~ 281 (512)
.+.+.++ ||.+.|+....-|...-+++.+.|.+++||-- +.++.-..+. .....+++++.+.++...|+.|
T Consensus 15 ~ll~~~e-G~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~-------~~mP~~~~~~~y~~e~~~L~vg 86 (404)
T KOG1409|consen 15 ELLSKIE-GSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIY-------HYMPSPCSAMEYVSESRRLYVG 86 (404)
T ss_pred hhhhhhc-CchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhh-------hhCCCCceEeeeeccceEEEEE
Confidence 3444555 89999999888898888999999999999953 3344333222 1256789999999999999999
Q ss_pred eCCCeEEEEEccC----CeeeEEeccccccCeEEEEEecCCCEEEEEeCCCcEEEE------------------------
Q 010362 282 SQDGKIKVWRIRS----GQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIH------------------------ 333 (512)
Q Consensus 282 ~~dg~i~vwd~~~----~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~i~------------------------ 333 (512)
-..|++.-+.+.. ....+... .|...+..+.|+.....+++.+.|..+.--
T Consensus 87 ~~ngtvtefs~sedfnkm~~~r~~~-~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~ 165 (404)
T KOG1409|consen 87 QDNGTVTEFALSEDFNKMTFLKDYL-AHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDA 165 (404)
T ss_pred EecceEEEEEhhhhhhhcchhhhhh-hhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeeccCCCCceee
Confidence 9999998886643 22333333 677778888777666666666655443211
Q ss_pred ---------------e--CCCCceeEEeeCCccceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeecCCCCCCCCCC
Q 010362 334 ---------------G--LKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGD 396 (512)
Q Consensus 334 ---------------d--~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 396 (512)
. ...-..+.++.+|.+.+.+++|.|....+++|..|..+.+||+-..+-... ...+|.
T Consensus 166 ~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~-----el~gh~ 240 (404)
T KOG1409|consen 166 LYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAY-----ELQGHN 240 (404)
T ss_pred EEEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceee-----eeccch
Confidence 1 112234567789999999999999999999999999999999875543222 123566
Q ss_pred ceeEEEEEcCCCCCeEEEEcCCCcEEEEecCCeEEEEee--CCc-----------------------------cc-CCcE
Q 010362 397 ASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQVVKSFS--SGK-----------------------------RE-GGDF 444 (512)
Q Consensus 397 ~~i~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~--~~~-----------------------------~~-~~~~ 444 (512)
..+..+...+.- ..+++++.||.|.+|+++........ ... .. +..+
T Consensus 241 ~kV~~l~~~~~t-~~l~S~~edg~i~~w~mn~~r~etpewl~s~~cQ~c~qpffwn~~~m~~~k~~glr~h~crkcg~av 319 (404)
T KOG1409|consen 241 DKVQALSYAQHT-RQLISCGEDGGIVVWNMNVKRVETPEWLDSDSCQKCNQPFFWNFRQMWDRKQLGLRQHHCRKCGKAV 319 (404)
T ss_pred hhhhhhhhhhhh-eeeeeccCCCeEEEEeccceeecCccccccchhhhhCchHHHHHHHHHhhhhhhhhhhhhhhhhhhc
Confidence 666666655544 78899999999999999844332111 000 00 0111
Q ss_pred EEEEECCCCCEEEEEeCCCeEEEEEcCC-------CeeEEeccccCCCeEEEEEcCCCCeEEEEECCCeEEEecC
Q 010362 445 VAACVSPKGEWIYCVGEDRNLYCFSHQS-------GKLEHLMKVHEKDVIGVTHHPHRNLLATYGEDCTMKLWKP 512 (512)
Q Consensus 445 ~~~~~s~~g~~l~~g~~dg~i~iwd~~~-------~~~~~~~~~h~~~v~~v~~~p~~~~l~s~~~dg~i~iW~~ 512 (512)
...|-+... ...+-+..-.+++-|.-. ..++.....-...|+++.+..+..+|+|+|.|..|+|||.
T Consensus 320 c~~c~s~~~-~~p~mg~e~~vR~~~~c~~~i~~~~~t~LA~phei~tgItamhlqetlglLvTsG~~Rvi~iwd~ 393 (404)
T KOG1409|consen 320 CGKCSSNRS-SYPTMGFEFSVRVCDSCYPTIKDEERTPLAIPHEIKTGITAMHLQETLGLLVTSGTDRVIKIWDV 393 (404)
T ss_pred CcccccCcc-ccccccceeEEEEecccchhhhcCCCCccccccccccceeEEEhhhhccceeecCCceEEEEEec
Confidence 111212111 122222233444444321 1223333322356888988888889999999999999983
No 248
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.53 E-value=6.7e-13 Score=114.46 Aligned_cols=247 Identities=15% Similarity=0.246 Sum_probs=175.2
Q ss_pred cCcceeEEEEcCCCCeEEEEeCCCeEEEEEccCCe-----eeEEecccc------------ccCeEEEEEecCC--CEEE
Q 010362 262 HDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQ-----CLRRLERAH------------SEGVTSLVFSRDG--SQIL 322 (512)
Q Consensus 262 h~~~v~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~-----~~~~~~~~~------------~~~i~~~~~~~~~--~~l~ 322 (512)
...-|.++.|...|.+||+|..+|.|.++.-.... ....+. .| ...|..+.|.+++ ..++
T Consensus 24 eadiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fq-shepEFDYLkSleieEKinkIrw~~~~n~a~FL 102 (433)
T KOG1354|consen 24 EADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQ-SHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFL 102 (433)
T ss_pred hhcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeee-ccCcccchhhhhhhhhhhhhceecCCCCccEEE
Confidence 34668999999999999999999999999643221 111221 22 2358889998864 4677
Q ss_pred EEeCCCcEEEEeCCCCcee-----------------------------------EEe-eCCccceeEEEEcCCCCEEEEE
Q 010362 323 STSFDSTARIHGLKSGKLL-----------------------------------KEF-RGHSSYVNDAIFTNDGSRVVTA 366 (512)
Q Consensus 323 ~~~~dg~v~i~d~~~~~~~-----------------------------------~~~-~~~~~~v~~~~~~~~~~~l~~~ 366 (512)
..+.|.+|++|-+...... +.+ .+|.-.|+++.++.|+..++++
T Consensus 103 lstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSA 182 (433)
T KOG1354|consen 103 LSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSA 182 (433)
T ss_pred EecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeec
Confidence 7888999999987532110 111 2577789999999999988877
Q ss_pred eCCCcEEEEeCCCCceeeecCCC--CCCCCCCceeEEEEEcCCCCCeEEEEcCCCcEEEEecCCe-----EEEEeeCCcc
Q 010362 367 SSDCTVKVWDLKSTDCLQTFKPP--PPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQ-----VVKSFSSGKR 439 (512)
Q Consensus 367 ~~dg~i~iwd~~~~~~~~~~~~~--~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~-----~~~~~~~~~~ 439 (512)
. |=.|.+|++.-......+... ........-|++..|+|.....++..+..|.|++-|++.. ..+.+.....
T Consensus 183 D-dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEeped 261 (433)
T KOG1354|consen 183 D-DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPED 261 (433)
T ss_pred c-ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccC
Confidence 6 678999998754322222211 1112233468889999999999999999999999999832 2222222111
Q ss_pred ---------cCCcEEEEEECCCCCEEEEEeCCCeEEEEEc-CCCeeEEeccccCC------------C---eEEEEEcCC
Q 010362 440 ---------EGGDFVAACVSPKGEWIYCVGEDRNLYCFSH-QSGKLEHLMKVHEK------------D---VIGVTHHPH 494 (512)
Q Consensus 440 ---------~~~~~~~~~~s~~g~~l~~g~~dg~i~iwd~-~~~~~~~~~~~h~~------------~---v~~v~~~p~ 494 (512)
--..|..+.|+++|+|+++-+. -+|.+||+ ...+++.+++.|.. . -..++|+.+
T Consensus 262 p~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~ 340 (433)
T KOG1354|consen 262 PSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGN 340 (433)
T ss_pred CcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCC
Confidence 1245788999999999988654 58999999 45677777766542 1 236789999
Q ss_pred CCeEEEEECCCeEEEec
Q 010362 495 RNLLATYGEDCTMKLWK 511 (512)
Q Consensus 495 ~~~l~s~~~dg~i~iW~ 511 (512)
+.+++|||....+++++
T Consensus 341 ~~~v~TGsy~n~frvf~ 357 (433)
T KOG1354|consen 341 DSYVMTGSYNNVFRVFN 357 (433)
T ss_pred cceEecccccceEEEec
Confidence 99999999999999986
No 249
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.53 E-value=2e-11 Score=111.01 Aligned_cols=275 Identities=17% Similarity=0.222 Sum_probs=186.1
Q ss_pred CcCceEEEEECCCCCEEEEEeCCCeEEEEEcCCCeeeccccccccceeeccCcceeEEEEcCCCCeEEEEeCCC------
Q 010362 212 TKSHAECARFSPDGQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQDG------ 285 (512)
Q Consensus 212 h~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg------ 285 (512)
-.-++..++|||.|.+|++....| |.+|..........+ ....|..+.|+|++++|.+=+..+
T Consensus 31 ~~~p~~~~~~SP~G~~l~~~~~~~-V~~~~g~~~~~l~~~----------~~~~V~~~~fSP~~kYL~tw~~~pi~~pe~ 99 (561)
T COG5354 31 ENWPVAYVSESPLGTYLFSEHAAG-VECWGGPSKAKLVRF----------RHPDVKYLDFSPNEKYLVTWSREPIIEPEI 99 (561)
T ss_pred cCcchhheeecCcchheehhhccc-eEEccccchhheeee----------ecCCceecccCcccceeeeeccCCccChhh
Confidence 556788999999999999887654 889987665533322 235699999999999999865433
Q ss_pred ---------eEEEEEccCCeeeEEeccc-----------------------------c---------------ccCeEEE
Q 010362 286 ---------KIKVWRIRSGQCLRRLERA-----------------------------H---------------SEGVTSL 312 (512)
Q Consensus 286 ---------~i~vwd~~~~~~~~~~~~~-----------------------------~---------------~~~i~~~ 312 (512)
.+.+||+.+|..+..+... | ...|...
T Consensus 100 e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv~~sl~i~e~t~n~~~~p~~~lr~~gi~dF 179 (561)
T COG5354 100 EISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVVGSSLYIHEITDNIEEHPFKNLRPVGILDF 179 (561)
T ss_pred ccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhccCeEEEEecCCccccCchhhccccceeeE
Confidence 4999999988766554310 0 1345566
Q ss_pred EEecCC--CEEEE-----EeCCCcEEEEeCCCCceeEEeeCCccceeEEEEcCCCCEEEEEe-----------CCCcEEE
Q 010362 313 VFSRDG--SQILS-----TSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTAS-----------SDCTVKV 374 (512)
Q Consensus 313 ~~~~~~--~~l~~-----~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-----------~dg~i~i 374 (512)
.|+|.+ ..|+. .+..+.+++|.+..+..+.+..-....-..+.|.+.|++++.-. ....+.+
T Consensus 180 sisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl 259 (561)
T COG5354 180 SISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYL 259 (561)
T ss_pred EecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEE
Confidence 666642 23332 23456777777766655544333333334578888888765421 1245677
Q ss_pred EeCCCCceeeecCCCCCCCCCCceeEEEEEcCCCCCeEEEE-cCCCcEEEEecCCeEEEEeeCCcccCCcEEEEEECCCC
Q 010362 375 WDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVC-NKTSSIYIMTLQGQVVKSFSSGKREGGDFVAACVSPKG 453 (512)
Q Consensus 375 wd~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g 453 (512)
++++...+... ....++|...+|.|.+..+.++. .....+.++|++++....+.... -..+.|+|.+
T Consensus 260 ~~~~e~~i~V~-------~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~Nl~~~~Pe~~-----rNT~~fsp~~ 327 (561)
T COG5354 260 LRITERSIPVE-------KDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGNLRFYFPEQK-----RNTIFFSPHE 327 (561)
T ss_pred Eeeccccccee-------ccccccceeeeecccCCceeEEecccccceeecccccceEEecCCcc-----cccccccCcc
Confidence 77763222111 13467999999999986665444 68889999999998555544433 3568899999
Q ss_pred CEEEEEeC---CCeEEEEEcCCCeeEE-eccccCCCeEEEEEcCCCCeEEEEE------CCCeEEEec
Q 010362 454 EWIYCVGE---DRNLYCFSHQSGKLEH-LMKVHEKDVIGVTHHPHRNLLATYG------EDCTMKLWK 511 (512)
Q Consensus 454 ~~l~~g~~---dg~i~iwd~~~~~~~~-~~~~h~~~v~~v~~~p~~~~l~s~~------~dg~i~iW~ 511 (512)
++++.++- -|.+-+||........ .+.+. ...-+.|+||+.++.+.. .|..|.||+
T Consensus 328 r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~--n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~ 393 (561)
T COG5354 328 RYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGL--NTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWD 393 (561)
T ss_pred cEEEEecCCccccceEEeccCCceEEEEEeecC--CceEeeccCCceEEEecCCCcccccCcceEEEE
Confidence 99999774 4689999987665443 44433 345678999999887764 477899997
No 250
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.53 E-value=1.9e-10 Score=100.93 Aligned_cols=277 Identities=17% Similarity=0.246 Sum_probs=185.1
Q ss_pred ecCcCceEEEEECCCCCEEEEEeC---CCeEEEEEcCC--CeeeccccccccceeeccCcceeEEEEcCCCCeEEEEeC-
Q 010362 210 FGTKSHAECARFSPDGQFLVSCSF---DGFIEVWDYLS--GKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQ- 283 (512)
Q Consensus 210 ~~h~~~v~~~~~s~~~~~l~sg~~---dg~i~iwd~~~--~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~- 283 (512)
..+.+.++-++|+|++++|.++-. +|.|.-|.++. |++...-. ... ...+...++++++|++++++..
T Consensus 36 v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~----~~~--~g~~p~yvsvd~~g~~vf~AnY~ 109 (346)
T COG2706 36 VAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNR----QTL--PGSPPCYVSVDEDGRFVFVANYH 109 (346)
T ss_pred ccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeec----ccc--CCCCCeEEEECCCCCEEEEEEcc
Confidence 366777899999999999998864 47788887765 44322111 111 2234488999999999999875
Q ss_pred CCeEEEEEccC-CeeeEEec-cccccC----------eEEEEEecCCCEEEEEeCC-CcEEEEeCCCCceeEEee---CC
Q 010362 284 DGKIKVWRIRS-GQCLRRLE-RAHSEG----------VTSLVFSRDGSQILSTSFD-STARIHGLKSGKLLKEFR---GH 347 (512)
Q Consensus 284 dg~i~vwd~~~-~~~~~~~~-~~~~~~----------i~~~~~~~~~~~l~~~~~d-g~v~i~d~~~~~~~~~~~---~~ 347 (512)
-|.|.++-+.. |....... ..|.+. +.+..+.|+++++++.+.. ..|.+|++..|+....-. ..
T Consensus 110 ~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~ 189 (346)
T COG2706 110 SGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKP 189 (346)
T ss_pred CceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCC
Confidence 57899999865 43322110 123333 8889999999999887642 368999998776533211 23
Q ss_pred ccceeEEEEcCCCCEEEEEeC-CCcEEEEeCCCC-c---eeeecCCCCCCCCCCceeEEEEEcCCCCCeEEEEcCCCcEE
Q 010362 348 SSYVNDAIFTNDGSRVVTASS-DCTVKVWDLKST-D---CLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIY 422 (512)
Q Consensus 348 ~~~v~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~-~---~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~ 422 (512)
....+.|.|+|++++..+.++ +++|.+|..... . .++.+...+.-.........+.++|++.-+.++--....|.
T Consensus 190 G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~ 269 (346)
T COG2706 190 GAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIA 269 (346)
T ss_pred CCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEE
Confidence 456889999999998866654 899999998773 2 23333222222334567788999999944444444556788
Q ss_pred EEecC--CeEEEEeeCCcccCCcEEEEEECCCCCEEEEEeCCC-eEEEEEc--CCCeeEEecc-ccCCCeEEEEEc
Q 010362 423 IMTLQ--GQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDR-NLYCFSH--QSGKLEHLMK-VHEKDVIGVTHH 492 (512)
Q Consensus 423 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~dg-~i~iwd~--~~~~~~~~~~-~h~~~v~~v~~~ 492 (512)
++.+. +..+........++.......++++|++|+++.+++ .|.+|.+ .+|++-.... .......||.|.
T Consensus 270 ~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~TG~L~~~~~~~~~p~Pvcv~f~ 345 (346)
T COG2706 270 VFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKETGRLTLLGRYAVVPEPVCVKFL 345 (346)
T ss_pred EEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCCceEEecccccCCCCcEEEEEc
Confidence 88776 455555554444455577899999999999998654 5777755 4566554433 334456677664
No 251
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.51 E-value=1.9e-11 Score=119.07 Aligned_cols=208 Identities=22% Similarity=0.231 Sum_probs=139.7
Q ss_pred eEEEecCcCceEEEEECCCCCEEEEEeCC---CeEEEEEcCCCeeeccccccccceeeccCcceeEEEEcCCCCeEEEE-
Q 010362 206 HTIKFGTKSHAECARFSPDGQFLVSCSFD---GFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASG- 281 (512)
Q Consensus 206 ~~~~~~h~~~v~~~~~s~~~~~l~sg~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~- 281 (512)
+.+. .+...+.+.+|+|||++|+.++.+ ..|++||+.+++.... ..+...+.+++|+|||+.|+..
T Consensus 183 ~~l~-~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~---------~~~~~~~~~~~~spDg~~l~~~~ 252 (417)
T TIGR02800 183 QTIT-RSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKV---------ASFPGMNGAPAFSPDGSKLAVSL 252 (417)
T ss_pred EEee-cCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEe---------ecCCCCccceEECCCCCEEEEEE
Confidence 3443 566678999999999999987654 4799999988754321 1244566779999999877654
Q ss_pred eCCC--eEEEEEccCCeeeEEeccccccCeEEEEEecCCCEEEEEeCC-C--cEEEEeCCCCceeEEeeCCccceeEEEE
Q 010362 282 SQDG--KIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFD-S--TARIHGLKSGKLLKEFRGHSSYVNDAIF 356 (512)
Q Consensus 282 ~~dg--~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-g--~v~i~d~~~~~~~~~~~~~~~~v~~~~~ 356 (512)
+.++ .|.+||+.++... .+. .+........|+|||+.|+.++.. + .|+++|+.+++.. .+..+...+....|
T Consensus 253 ~~~~~~~i~~~d~~~~~~~-~l~-~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~-~l~~~~~~~~~~~~ 329 (417)
T TIGR02800 253 SKDGNPDIYVMDLDGKQLT-RLT-NGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVR-RLTFRGGYNASPSW 329 (417)
T ss_pred CCCCCccEEEEECCCCCEE-ECC-CCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEE-EeecCCCCccCeEE
Confidence 4444 5888998877643 333 344445677899999988876643 3 5888888766543 44444556778899
Q ss_pred cCCCCEEEEEeCCC---cEEEEeCCCCceeeecCCCCCCCCCCceeEEEEEcCCCCCeEEEEcCCC--cEEEEecCCeEE
Q 010362 357 TNDGSRVVTASSDC---TVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTS--SIYIMTLQGQVV 431 (512)
Q Consensus 357 ~~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~--~i~~~~~~~~~~ 431 (512)
+|+|++++.++.++ .|.+||+.++... .+... .......|+|++..++++...++ .+++.+..+...
T Consensus 330 spdg~~i~~~~~~~~~~~i~~~d~~~~~~~-~l~~~-------~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~g~~~ 401 (417)
T TIGR02800 330 SPDGDLIAFVHREGGGFNIAVMDLDGGGER-VLTDT-------GLDESPSFAPNGRMILYATTRGGRGVLGLVSTDGRFR 401 (417)
T ss_pred CCCCCEEEEEEccCCceEEEEEeCCCCCeE-EccCC-------CCCCCceECCCCCEEEEEEeCCCcEEEEEEECCCcee
Confidence 99999999888776 7889998875432 22211 11234578998855555555443 355666666554
Q ss_pred EEe
Q 010362 432 KSF 434 (512)
Q Consensus 432 ~~~ 434 (512)
..+
T Consensus 402 ~~~ 404 (417)
T TIGR02800 402 ARL 404 (417)
T ss_pred eEC
Confidence 443
No 252
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.50 E-value=1.4e-12 Score=112.54 Aligned_cols=245 Identities=15% Similarity=0.228 Sum_probs=186.6
Q ss_pred ceeeccCcceeEEEEcCCCCeEEEEeCCCeEEEEE-ccCCeeeEEeccccccCeEEEEEecCCCEEEEEeCCCcEEEEeC
Q 010362 257 ETFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWR-IRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGL 335 (512)
Q Consensus 257 ~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~vwd-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~i~d~ 335 (512)
..+.||...|+....-|...-+++.+.|.+++||- .+.++.-..+....+.+++++.+.++...|++|-..|++.-+.+
T Consensus 18 ~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~ 97 (404)
T KOG1409|consen 18 SKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTEFAL 97 (404)
T ss_pred hhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEEEEEh
Confidence 35677888999988888888899999999999995 34566666665556788999999999999999999999988865
Q ss_pred C----CCceeEEeeCCccceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeecCCCCCCCCCCceeEEEEEcCCCCCe
Q 010362 336 K----SGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDH 411 (512)
Q Consensus 336 ~----~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 411 (512)
. .....+.+..|...+..+.|+-...++++.+.|..+.---.+.+..+..+...... +++.+ .-..
T Consensus 98 sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~-------t~~~~---d~~~ 167 (404)
T KOG1409|consen 98 SEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETPA-------SALQF---DALY 167 (404)
T ss_pred hhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeeccC-------CCCce---eeEE
Confidence 3 34456667789999999999988899999999987654444444433222111100 00000 0014
Q ss_pred EEEEcCCCcEEEEecCCeEEEEeeCCcccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCe-eEEeccccCCCeEEEE
Q 010362 412 IVVCNKTSSIYIMTLQGQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGK-LEHLMKVHEKDVIGVT 490 (512)
Q Consensus 412 l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~-~~~~~~~h~~~v~~v~ 490 (512)
..+|...|.+..-.+....+..+.....+...+.+++|.+....+++|..|..+.+||+.-++ ....+.+|.+.|..+.
T Consensus 168 ~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~ 247 (404)
T KOG1409|consen 168 AFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALS 247 (404)
T ss_pred EEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhh
Confidence 556667777777766655555555555567889999999999999999999999999997654 3456788999999999
Q ss_pred EcCCCCeEEEEECCCeEEEec
Q 010362 491 HHPHRNLLATYGEDCTMKLWK 511 (512)
Q Consensus 491 ~~p~~~~l~s~~~dg~i~iW~ 511 (512)
.-+.-+.+.+++.||.|.+|+
T Consensus 248 ~~~~t~~l~S~~edg~i~~w~ 268 (404)
T KOG1409|consen 248 YAQHTRQLISCGEDGGIVVWN 268 (404)
T ss_pred hhhhheeeeeccCCCeEEEEe
Confidence 988888999999999999997
No 253
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.50 E-value=1.3e-11 Score=104.50 Aligned_cols=264 Identities=17% Similarity=0.183 Sum_probs=180.4
Q ss_pred CCeEEEEEcCCCeeeccccccccceeeccCcceeEEEEcC---CCC-eEEEEeCCCeEEEEEccCCeeeEEecccc----
Q 010362 234 DGFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSR---DSE-MLASGSQDGKIKVWRIRSGQCLRRLERAH---- 305 (512)
Q Consensus 234 dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~---~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~---- 305 (512)
.|.+.+|++...+....... .......+..|.|.. +|. .++-+..+|.|.++..........+..-.
T Consensus 45 ~Gkl~Lys~~d~~~~~l~~~-----q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki 119 (339)
T KOG0280|consen 45 SGKLHLYSLEDMKLSPLDTL-----QCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKI 119 (339)
T ss_pred ccceEEEeecccccCcccee-----eeecccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhh
Confidence 47889999887765541111 111345677888875 455 56667778999999876544433333111
Q ss_pred -ccCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeE--EeeCCccceeEEEEcC-CCCEEEEEeCCCcEEEEeCCCCc
Q 010362 306 -SEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLK--EFRGHSSYVNDAIFTN-DGSRVVTASSDCTVKVWDLKSTD 381 (512)
Q Consensus 306 -~~~i~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~--~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~ 381 (512)
.....++.|++.+..++++..+|.+.+.+........ +++.|.-+.....|+. +.+.+.+|+.|+.+..||+|...
T Consensus 120 ~~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~ 199 (339)
T KOG0280|consen 120 SVVEALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPK 199 (339)
T ss_pred hheeeeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCc
Confidence 1124578899999999999999999976665554443 7889999999999876 44688999999999999999332
Q ss_pred -eeeecCCCCCCCCCCceeEEEEEcCCCCCeEEEEcCCCcEEEEecC--CeEEEEeeCCcccCCcEEEEEECCCCC-EEE
Q 010362 382 -CLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQ--GQVVKSFSSGKREGGDFVAACVSPKGE-WIY 457 (512)
Q Consensus 382 -~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~~~~~--~~~~~~~~~~~~~~~~~~~~~~s~~g~-~l~ 457 (512)
.+.. ....|...|.++.-+|..+..+++|+.|..|++||.+ ++++..... .+.|..++++|.-. .++
T Consensus 200 ~~i~~-----n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v----~GGVWRi~~~p~~~~~lL 270 (339)
T KOG0280|consen 200 TFIWH-----NSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAKV----GGGVWRIKHHPEIFHRLL 270 (339)
T ss_pred ceeee-----cceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCcc----ccceEEEEecchhhhHHH
Confidence 2222 1235778899999999999999999999999999998 444333222 36799999988543 233
Q ss_pred EEeCCCeEEEEEcCCC--e---eEEeccccCCCeEEEEEcCCCCeEEEEE-CCCeEE-Eec
Q 010362 458 CVGEDRNLYCFSHQSG--K---LEHLMKVHEKDVIGVTHHPHRNLLATYG-EDCTMK-LWK 511 (512)
Q Consensus 458 ~g~~dg~i~iwd~~~~--~---~~~~~~~h~~~v~~v~~~p~~~~l~s~~-~dg~i~-iW~ 511 (512)
+++.-.-..|-+...+ + .....+.|.+-+..-.|.....+||||+ .|+.++ +|-
T Consensus 271 ~~CMh~G~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl 331 (339)
T KOG0280|consen 271 AACMHNGAKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWL 331 (339)
T ss_pred HHHHhcCceEEEecccccchheeeeccccccceeeccccccccceeeeeeccccceeeeee
Confidence 3333333455555443 2 3344566777777777865567899876 577755 773
No 254
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.49 E-value=3.9e-11 Score=115.46 Aligned_cols=240 Identities=12% Similarity=0.069 Sum_probs=148.0
Q ss_pred CeEEEEEcCCCeeeccccccccceeeccCcceeEEEEcCCCCeEE---EEeCCC--eEEEEEccCCeeeEEeccccccCe
Q 010362 235 GFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLA---SGSQDG--KIKVWRIRSGQCLRRLERAHSEGV 309 (512)
Q Consensus 235 g~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~---s~~~dg--~i~vwd~~~~~~~~~~~~~~~~~i 309 (512)
+.|.+.|.+.+.... +......+..-+|+|||+.++ +...+| .|.+.++.+|+..... ...+..
T Consensus 165 ~~l~~~d~dG~~~~~---------lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt--~~~g~~ 233 (428)
T PRK01029 165 GELWSVDYDGQNLRP---------LTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKIL--ALQGNQ 233 (428)
T ss_pred ceEEEEcCCCCCceE---------cccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEee--cCCCCc
Confidence 357777765544321 122445567789999997522 343343 5788888877643332 244556
Q ss_pred EEEEEecCCCEEEEEeC-CC----cEEEEeCCCC---ceeEEeeCCccceeEEEEcCCCCEEEEEe-CCCcEEEEe--CC
Q 010362 310 TSLVFSRDGSQILSTSF-DS----TARIHGLKSG---KLLKEFRGHSSYVNDAIFTNDGSRVVTAS-SDCTVKVWD--LK 378 (512)
Q Consensus 310 ~~~~~~~~~~~l~~~~~-dg----~v~i~d~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd--~~ 378 (512)
....|+|||+.|+..+. +| .+..|++..+ +.......+.......+|+|||+.|+..+ .+|...+|. +.
T Consensus 234 ~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~ 313 (428)
T PRK01029 234 LMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQID 313 (428)
T ss_pred cceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECc
Confidence 67899999999887653 22 3344676643 33333323333456789999999887665 466555554 43
Q ss_pred C-CceeeecCCCCCCCCCCceeEEEEEcCCCCCeEEEEcCC--CcEEEEecCCeEEEEeeCCcccCCcEEEEEECCCCCE
Q 010362 379 S-TDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKT--SSIYIMTLQGQVVKSFSSGKREGGDFVAACVSPKGEW 455 (512)
Q Consensus 379 ~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~--~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~ 455 (512)
. +.....+. .....+....|+|++..++++...+ ..|++||+.+.....+.... ..+....|+|||+.
T Consensus 314 ~~g~~~~~lt------~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~~---~~~~~p~wSpDG~~ 384 (428)
T PRK01029 314 PEGQSPRLLT------KKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTSP---ENKESPSWAIDSLH 384 (428)
T ss_pred ccccceEEec------cCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCCC---CCccceEECCCCCE
Confidence 2 12122221 1223556788999995555555443 46899999866665554332 23567899999998
Q ss_pred EEEEeC---CCeEEEEEcCCCeeEEeccccCCCeEEEEEcCCC
Q 010362 456 IYCVGE---DRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPHR 495 (512)
Q Consensus 456 l~~g~~---dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~p~~ 495 (512)
|+.... ...|+++|+.+++...... ..+.+...+|+|..
T Consensus 385 L~f~~~~~g~~~L~~vdl~~g~~~~Lt~-~~g~~~~p~Ws~~~ 426 (428)
T PRK01029 385 LVYSAGNSNESELYLISLITKKTRKIVI-GSGEKRFPSWGAFP 426 (428)
T ss_pred EEEEECCCCCceEEEEECCCCCEEEeec-CCCcccCceecCCC
Confidence 876543 3579999998877654443 44567788998853
No 255
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.49 E-value=2e-11 Score=118.48 Aligned_cols=218 Identities=21% Similarity=0.214 Sum_probs=139.6
Q ss_pred cCcCceEEEEECCCCCEEEEEeCC-C--eEEEEEcCCCeeeccccccccceeeccCcceeEEEEcCCCCeEEE-EeCCCe
Q 010362 211 GTKSHAECARFSPDGQFLVSCSFD-G--FIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLAS-GSQDGK 286 (512)
Q Consensus 211 ~h~~~v~~~~~s~~~~~l~sg~~d-g--~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s-~~~dg~ 286 (512)
.+...+.+..|||||+.|+..+.+ + .|.+||+.+++...... ........+|+|||+.|+. .+.+|.
T Consensus 215 ~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~---------~~g~~~~~~wSPDG~~La~~~~~~g~ 285 (448)
T PRK04792 215 RSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTS---------FPGINGAPRFSPDGKKLALVLSKDGQ 285 (448)
T ss_pred cCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecC---------CCCCcCCeeECCCCCEEEEEEeCCCC
Confidence 566778899999999999877543 3 58888988776432111 1223446899999998875 455664
Q ss_pred --EEEEEccCCeeeEEeccccccCeEEEEEecCCCEEEEEeC-CC--cEEEEeCCCCceeEEeeCCccceeEEEEcCCCC
Q 010362 287 --IKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSF-DS--TARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGS 361 (512)
Q Consensus 287 --i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg--~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~ 361 (512)
|.++|+.+++.. .+. .+.......+|+|||+.++..+. ++ .|+++|+.+++... +...........|+|+|+
T Consensus 286 ~~Iy~~dl~tg~~~-~lt-~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~-Lt~~g~~~~~~~~SpDG~ 362 (448)
T PRK04792 286 PEIYVVDIATKALT-RIT-RHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSR-LTFEGEQNLGGSITPDGR 362 (448)
T ss_pred eEEEEEECCCCCeE-ECc-cCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-EecCCCCCcCeeECCCCC
Confidence 778888877643 343 34455678899999998877654 33 57777887776533 222222234578999999
Q ss_pred EEEEEeC-CC--cEEEEeCCCCceeeecCCCCCCCCCCceeEEEEEcCCCCCeEEEEcCCCc--EEEEecCCeEEEEeeC
Q 010362 362 RVVTASS-DC--TVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSS--IYIMTLQGQVVKSFSS 436 (512)
Q Consensus 362 ~l~~~~~-dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~--i~~~~~~~~~~~~~~~ 436 (512)
+++..+. ++ .|.++|+.++.... +.... ......|+|++..++++...++. +++++.++.....+..
T Consensus 363 ~l~~~~~~~g~~~I~~~dl~~g~~~~-lt~~~-------~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~G~~~~~l~~ 434 (448)
T PRK04792 363 SMIMVNRTNGKFNIARQDLETGAMQV-LTSTR-------LDESPSVAPNGTMVIYSTTYQGKQVLAAVSIDGRFKARLPA 434 (448)
T ss_pred EEEEEEecCCceEEEEEECCCCCeEE-ccCCC-------CCCCceECCCCCEEEEEEecCCceEEEEEECCCCceEECcC
Confidence 9877655 34 35567887765432 22111 11234799999666666665554 6777777766555543
Q ss_pred CcccCCcEEEEEECC
Q 010362 437 GKREGGDFVAACVSP 451 (512)
Q Consensus 437 ~~~~~~~~~~~~~s~ 451 (512)
. .+.+...+|+|
T Consensus 435 ~---~g~~~~p~Wsp 446 (448)
T PRK04792 435 G---QGEVKSPAWSP 446 (448)
T ss_pred C---CCCcCCCccCC
Confidence 2 23345566766
No 256
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.48 E-value=1.8e-11 Score=119.28 Aligned_cols=218 Identities=20% Similarity=0.241 Sum_probs=141.1
Q ss_pred cCcCceEEEEECCCCCEEEEEeCC---CeEEEEEcCCCeeeccccccccceeeccCcceeEEEEcCCCCeEEE-EeCCC-
Q 010362 211 GTKSHAECARFSPDGQFLVSCSFD---GFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLAS-GSQDG- 285 (512)
Q Consensus 211 ~h~~~v~~~~~s~~~~~l~sg~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s-~~~dg- 285 (512)
.+...+...+|||||+.|+..+.+ ..|.+||+.+++...... ..+.+...+|+|||+.|+. .+.+|
T Consensus 196 ~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~---------~~g~~~~~~~SpDG~~la~~~~~~g~ 266 (430)
T PRK00178 196 QSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITN---------FEGLNGAPAWSPDGSKLAFVLSKDGN 266 (430)
T ss_pred cCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccC---------CCCCcCCeEECCCCCEEEEEEccCCC
Confidence 667788999999999999877643 369999998876433211 2334557899999998874 44454
Q ss_pred -eEEEEEccCCeeeEEeccccccCeEEEEEecCCCEEEEEeC-CC--cEEEEeCCCCceeEEeeCCccceeEEEEcCCCC
Q 010362 286 -KIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSF-DS--TARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGS 361 (512)
Q Consensus 286 -~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg--~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~ 361 (512)
.|.+||+.++... .+. .+........|+|||+.++..+. +| .|+++|+.+++... +...........|+|+|+
T Consensus 267 ~~Iy~~d~~~~~~~-~lt-~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~-lt~~~~~~~~~~~Spdg~ 343 (430)
T PRK00178 267 PEIYVMDLASRQLS-RVT-NHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAER-VTFVGNYNARPRLSADGK 343 (430)
T ss_pred ceEEEEECCCCCeE-Ecc-cCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-eecCCCCccceEECCCCC
Confidence 6888899887654 343 34455667899999998877664 33 58888887776433 222222334578999999
Q ss_pred EEEEEeCC-C--cEEEEeCCCCceeeecCCCCCCCCCCceeEEEEEcCCCCCeEEEEcCCC--cEEEEecCCeEEEEeeC
Q 010362 362 RVVTASSD-C--TVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTS--SIYIMTLQGQVVKSFSS 436 (512)
Q Consensus 362 ~l~~~~~d-g--~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~--~i~~~~~~~~~~~~~~~ 436 (512)
.++..+.+ + .|.+||+.++... .+.... ......|+|++..++++...++ .+++++..+.....+..
T Consensus 344 ~i~~~~~~~~~~~l~~~dl~tg~~~-~lt~~~-------~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g~~~~~l~~ 415 (430)
T PRK00178 344 TLVMVHRQDGNFHVAAQDLQRGSVR-ILTDTS-------LDESPSVAPNGTMLIYATRQQGRGVLMLVSINGRVRLPLPT 415 (430)
T ss_pred EEEEEEccCCceEEEEEECCCCCEE-EccCCC-------CCCCceECCCCCEEEEEEecCCceEEEEEECCCCceEECcC
Confidence 98877653 3 4888999887542 222111 1124579999855555555444 46677777665544432
Q ss_pred CcccCCcEEEEEECC
Q 010362 437 GKREGGDFVAACVSP 451 (512)
Q Consensus 437 ~~~~~~~~~~~~~s~ 451 (512)
. .+.+...+|+|
T Consensus 416 ~---~g~~~~p~ws~ 427 (430)
T PRK00178 416 A---QGEVREPSWSP 427 (430)
T ss_pred C---CCCcCCCccCC
Confidence 1 23344556665
No 257
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.47 E-value=1e-09 Score=100.45 Aligned_cols=274 Identities=15% Similarity=0.209 Sum_probs=171.9
Q ss_pred cccccccCccccceEEEecCcCceEEEEECCCCCEEEEEeC----------CCeEEEEEcCCCeeeccccccccceeecc
Q 010362 193 KQDVEDMYPTTLSHTIKFGTKSHAECARFSPDGQFLVSCSF----------DGFIEVWDYLSGKLKKDLQYQADETFMMH 262 (512)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~sg~~----------dg~i~iwd~~~~~~~~~~~~~~~~~~~~h 262 (512)
...+.|....+...++..|..... + +||||+.|+++.. +..|.+||..+.+...++...+.-.+. .
T Consensus 28 ~v~ViD~~~~~v~g~i~~G~~P~~--~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~-~ 103 (352)
T TIGR02658 28 QVYTIDGEAGRVLGMTDGGFLPNP--V-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFL-V 103 (352)
T ss_pred eEEEEECCCCEEEEEEEccCCCce--e-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhh-c
Confidence 445666667777788877765554 4 9999999887765 789999999999988877653221111 2
Q ss_pred CcceeEEEEcCCCCeEEEEe-C-CCeEEEEEccCCeeeEEeccccccCeEEEEEecCCCEEEEEeCCCcEEEEeCCC-Cc
Q 010362 263 DETVLCIEFSRDSEMLASGS-Q-DGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKS-GK 339 (512)
Q Consensus 263 ~~~v~~l~~s~~~~~l~s~~-~-dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~i~d~~~-~~ 339 (512)
......++++|||++|++.. . +..|.+.|+.+++.+..+.. .+...-...+++.. . +-+.||......+.+ ++
T Consensus 104 ~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~v--p~~~~vy~t~e~~~-~-~~~~Dg~~~~v~~d~~g~ 179 (352)
T TIGR02658 104 GTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDV--PDCYHIFPTANDTF-F-MHCRDGSLAKVGYGTKGN 179 (352)
T ss_pred cCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeC--CCCcEEEEecCCcc-E-EEeecCceEEEEecCCCc
Confidence 33445789999999998776 3 68999999999999988863 22222222222222 2 223355544433322 22
Q ss_pred ee-EE---eeCCccce-eEEEEcC-CCCEEEEEeCCCcEEEEeCCCCc-----eeeecCCCCC-CCCCCceeEEEEEcCC
Q 010362 340 LL-KE---FRGHSSYV-NDAIFTN-DGSRVVTASSDCTVKVWDLKSTD-----CLQTFKPPPP-LRGGDASVNSVHLFPK 407 (512)
Q Consensus 340 ~~-~~---~~~~~~~v-~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~-----~~~~~~~~~~-~~~~~~~i~~~~~~~~ 407 (512)
.. .. +.....++ ..-.|.+ +|.++++... |+|.+.|+.... ....+..... -.-.......++++|+
T Consensus 180 ~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~d 258 (352)
T TIGR02658 180 PKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRA 258 (352)
T ss_pred eEEeeeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCC
Confidence 11 11 11100110 0013455 8888877776 999999965432 2222211100 0012233344999999
Q ss_pred CCCeEEEEc---------CCCcEEEEecCC-eEEEEeeCCcccCCcEEEEEECCCCC-EEEEEe-CCCeEEEEEcCCCee
Q 010362 408 NPDHIVVCN---------KTSSIYIMTLQG-QVVKSFSSGKREGGDFVAACVSPKGE-WIYCVG-EDRNLYCFSHQSGKL 475 (512)
Q Consensus 408 ~~~~l~~~~---------~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~s~~g~-~l~~g~-~dg~i~iwd~~~~~~ 475 (512)
+..+++... ..+.+.++|... +.+..+..+ ..+..++++|||+ +|++.+ .++.|.++|..+++.
T Consensus 259 g~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG----~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~ 334 (352)
T TIGR02658 259 RDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELG----HEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKE 334 (352)
T ss_pred CCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCC----CceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeE
Confidence 866666442 225799999884 445555443 3578999999999 888777 678899999999999
Q ss_pred EEec
Q 010362 476 EHLM 479 (512)
Q Consensus 476 ~~~~ 479 (512)
++.+
T Consensus 335 i~~i 338 (352)
T TIGR02658 335 LSSV 338 (352)
T ss_pred Eeee
Confidence 9887
No 258
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.47 E-value=5.9e-10 Score=97.85 Aligned_cols=268 Identities=16% Similarity=0.215 Sum_probs=179.8
Q ss_pred CCeEEEEEcCCCeeeccccccccceeeccCcceeEEEEcCCCCeEEEEeCC---CeEEEEEccC--Ceee--EEeccccc
Q 010362 234 DGFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQD---GKIKVWRIRS--GQCL--RRLERAHS 306 (512)
Q Consensus 234 dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d---g~i~vwd~~~--~~~~--~~~~~~~~ 306 (512)
+.-|.+|++++..-..... ....+...++-|+|+|++++|.++..+ |.|..|.++. |+.. .... ...
T Consensus 15 s~gI~v~~ld~~~g~l~~~-----~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~-~~g 88 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLL-----QLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQT-LPG 88 (346)
T ss_pred CCceEEEEEeCcccccchh-----hhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccc-cCC
Confidence 4679999987433221111 122367889999999999999988654 7788887764 5432 2221 223
Q ss_pred cCeEEEEEecCCCEEEEEeC-CCcEEEEeCCC-CceeE--EeeCCccc----------eeEEEEcCCCCEEEEEeC-CCc
Q 010362 307 EGVTSLVFSRDGSQILSTSF-DSTARIHGLKS-GKLLK--EFRGHSSY----------VNDAIFTNDGSRVVTASS-DCT 371 (512)
Q Consensus 307 ~~i~~~~~~~~~~~l~~~~~-dg~v~i~d~~~-~~~~~--~~~~~~~~----------v~~~~~~~~~~~l~~~~~-dg~ 371 (512)
.+.+.+++++++++++++.. .|.|.++-++. |.... ....|.+. +....+.|+++++++.+. -..
T Consensus 89 ~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dr 168 (346)
T COG2706 89 SPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDR 168 (346)
T ss_pred CCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCce
Confidence 44589999999999998876 47899998865 33221 12224443 778899999999988754 236
Q ss_pred EEEEeCCCCceeeecCCCCCCCCCCceeEEEEEcCCCCCeEEEEcCCCcEEEEecCC--eEEEEeeCC------cccCCc
Q 010362 372 VKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQG--QVVKSFSSG------KREGGD 443 (512)
Q Consensus 372 i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~~~~~~--~~~~~~~~~------~~~~~~ 443 (512)
|.+|++..+.....-.... ........+.|+|+++-..+++--+++|.+|..+. .....+... -.....
T Consensus 169 i~~y~~~dg~L~~~~~~~v---~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~ 245 (346)
T COG2706 169 IFLYDLDDGKLTPADPAEV---KPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNW 245 (346)
T ss_pred EEEEEcccCcccccccccc---CCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCc
Confidence 9999999775433222111 23456788999999977778888999999999885 333332221 122344
Q ss_pred EEEEEECCCCCEEEEEe-CCCeEEEEEcCC--CeeE--EeccccCCCeEEEEEcCCCCeEEEEECCC-eEEEe
Q 010362 444 FVAACVSPKGEWIYCVG-EDRNLYCFSHQS--GKLE--HLMKVHEKDVIGVTHHPHRNLLATYGEDC-TMKLW 510 (512)
Q Consensus 444 ~~~~~~s~~g~~l~~g~-~dg~i~iwd~~~--~~~~--~~~~~h~~~v~~v~~~p~~~~l~s~~~dg-~i~iW 510 (512)
...+.+++||++|+++. ....|.+|.+.. +++. .....+....+...++|.+++|+.+..|+ .|.+|
T Consensus 246 ~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf 318 (346)
T COG2706 246 AAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVF 318 (346)
T ss_pred eeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEE
Confidence 56788899999999987 344788887653 3322 22333445578999999999998888554 46655
No 259
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.47 E-value=1.5e-11 Score=104.11 Aligned_cols=252 Identities=13% Similarity=0.103 Sum_probs=164.6
Q ss_pred cCcCceEEEEECC---CCC-EEEEEeCCCeEEEEEcCCCeeeccccccccceeeccCcceeEEEEcCCCCeEEEEeCCCe
Q 010362 211 GTKSHAECARFSP---DGQ-FLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQDGK 286 (512)
Q Consensus 211 ~h~~~v~~~~~s~---~~~-~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~ 286 (512)
...+.+..+.|.. +|. .++-+..+|.|.++..........+..- ....-....-.++.|++.+..++++..+|.
T Consensus 67 ~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~l--s~~ki~~~~~lslD~~~~~~~i~vs~s~G~ 144 (339)
T KOG0280|consen 67 TDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGL--SSKKISVVEALSLDISTSGTKIFVSDSRGS 144 (339)
T ss_pred ecccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeeccc--chhhhhheeeeEEEeeccCceEEEEcCCCc
Confidence 3345566777764 455 5666778899999976544433222210 000001113568889999999999999999
Q ss_pred EEEEEccCCeeeE--EeccccccCeEEEEEec-CCCEEEEEeCCCcEEEEeCC-CCceeEE-eeCCccceeEEEEcC-CC
Q 010362 287 IKVWRIRSGQCLR--RLERAHSEGVTSLVFSR-DGSQILSTSFDSTARIHGLK-SGKLLKE-FRGHSSYVNDAIFTN-DG 360 (512)
Q Consensus 287 i~vwd~~~~~~~~--~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~v~i~d~~-~~~~~~~-~~~~~~~v~~~~~~~-~~ 360 (512)
+.+-+........ ..+ .|.-.+....|+. +.+.+++|+.|+.+..||++ .++.+.. .+.|...|.++.-+| .+
T Consensus 145 ~~~v~~t~~~le~vq~wk-~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~ 223 (339)
T KOG0280|consen 145 ISGVYETEMVLEKVQTWK-VHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKP 223 (339)
T ss_pred EEEEecceeeeeeccccc-ccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCC
Confidence 9966655444333 454 8888999999986 45688999999999999998 3444443 456888899998886 57
Q ss_pred CEEEEEeCCCcEEEEeCCC-CceeeecCCCCCCCCCCceeEEEEEcCCCCCeEEEEcCCCcEEEEecCCeEEE---EeeC
Q 010362 361 SRVVTASSDCTVKVWDLKS-TDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQVVK---SFSS 436 (512)
Q Consensus 361 ~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~---~~~~ 436 (512)
.+++||+.|-.|++||.|+ ++++..- ...+.|..+.++|.....++++..-.-.++.+.+..... .+..
T Consensus 224 ~~I~TGsYDe~i~~~DtRnm~kPl~~~-------~v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~~~e~~~~~~s 296 (339)
T KOG0280|consen 224 TYIATGSYDECIRVLDTRNMGKPLFKA-------KVGGGVWRIKHHPEIFHRLLAACMHNGAKILDSSDKVLEFQIVLPS 296 (339)
T ss_pred ceEEEeccccceeeeehhcccCccccC-------ccccceEEEEecchhhhHHHHHHHhcCceEEEecccccchheeeec
Confidence 7999999999999999994 4443332 234789999999987666666666666777777644333 3333
Q ss_pred CcccCCcEEEEEECCCCCEEEEEe-CCCeEE-EEEcCC
Q 010362 437 GKREGGDFVAACVSPKGEWIYCVG-EDRNLY-CFSHQS 472 (512)
Q Consensus 437 ~~~~~~~~~~~~~s~~g~~l~~g~-~dg~i~-iwd~~~ 472 (512)
...+.+-.....|.....++++++ .|+.++ +|-.-+
T Consensus 297 ~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t 334 (339)
T KOG0280|consen 297 DKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLHIT 334 (339)
T ss_pred cccccceeeccccccccceeeeeeccccceeeeeeecc
Confidence 333333333334433335677765 455533 554433
No 260
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.45 E-value=1.3e-11 Score=114.35 Aligned_cols=186 Identities=13% Similarity=0.223 Sum_probs=147.1
Q ss_pred CCCCeEEEEeCCCeEEEEEccCCeeeEEeccc--cccCeEEEEEe--------------------cCCCEEEEEeCCCcE
Q 010362 273 RDSEMLASGSQDGKIKVWRIRSGQCLRRLERA--HSEGVTSLVFS--------------------RDGSQILSTSFDSTA 330 (512)
Q Consensus 273 ~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~--~~~~i~~~~~~--------------------~~~~~l~~~~~dg~v 330 (512)
|...++|....||.+++|+..+++....+... -.+..++..|. -+...++-|...|.|
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v 82 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV 82 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence 45678999999999999999999877766521 23445555552 134578888999999
Q ss_pred EEEeCCCCceeEEee--CCccceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeecCCCCCCCCCCceeEEEEEcCCC
Q 010362 331 RIHGLKSGKLLKEFR--GHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKN 408 (512)
Q Consensus 331 ~i~d~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 408 (512)
.+|+...++....+. .|.+.|+++.++.+-..|.+++.|+.+..|+.........+...
T Consensus 83 ~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~------------------- 143 (541)
T KOG4547|consen 83 LLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQ------------------- 143 (541)
T ss_pred EEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccC-------------------
Confidence 999999999888876 48999999999999889999999999999998876544443311
Q ss_pred CCeEEEEcCCCcEEEEecCCeEEEEeeCCcccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCeeEEeccccCCCeEE
Q 010362 409 PDHIVVCNKTSSIYIMTLQGQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIG 488 (512)
Q Consensus 409 ~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~ 488 (512)
...+.++|++|||..+++++ +.|.+||+++++.+..+.+|.++|++
T Consensus 144 --------------------------------~~~~~sl~is~D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t 189 (541)
T KOG4547|consen 144 --------------------------------KPLVSSLCISPDGKILLTAS--RQIKVLDIETKEVVITFTGHGSPVRT 189 (541)
T ss_pred --------------------------------CCccceEEEcCCCCEEEecc--ceEEEEEccCceEEEEecCCCcceEE
Confidence 23467899999999998887 78999999999999999999999999
Q ss_pred EEEcCC-----CCeEE-EEECCCeEEEec
Q 010362 489 VTHHPH-----RNLLA-TYGEDCTMKLWK 511 (512)
Q Consensus 489 v~~~p~-----~~~l~-s~~~dg~i~iW~ 511 (512)
++|.-+ |.++. +...+.-+.+|.
T Consensus 190 ~~f~~~~~g~~G~~vLssa~~~r~i~~w~ 218 (541)
T KOG4547|consen 190 LSFTTLIDGIIGKYVLSSAAAERGITVWV 218 (541)
T ss_pred EEEEEeccccccceeeeccccccceeEEE
Confidence 999876 55554 444555566663
No 261
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.44 E-value=4.2e-10 Score=117.02 Aligned_cols=284 Identities=12% Similarity=0.122 Sum_probs=187.2
Q ss_pred cCcCceEEEEECCCCCEEEEEeCCCeEEEE----EcCCCeeeccccccccceeeccCcceeEEEEcCCCCeEEEEeCCCe
Q 010362 211 GTKSHAECARFSPDGQFLVSCSFDGFIEVW----DYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQDGK 286 (512)
Q Consensus 211 ~h~~~v~~~~~s~~~~~l~sg~~dg~i~iw----d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~ 286 (512)
...+.|.++.|-++...++.+..+|.|.+. +..+.... ....-...|.+++||||+..|+..+.+|+
T Consensus 73 ~~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E---------~VG~vd~GI~a~~WSPD~Ella~vT~~~~ 143 (928)
T PF04762_consen 73 DPNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDEIE---------IVGSVDSGILAASWSPDEELLALVTGEGN 143 (928)
T ss_pred CCCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCceeE---------EEEEEcCcEEEEEECCCcCEEEEEeCCCE
Confidence 345789999999999999999999999999 44433221 12225678999999999999999999999
Q ss_pred EEEEEccCCeee------------------------EEec------------c-----------ccccCeEEEEEecCCC
Q 010362 287 IKVWRIRSGQCL------------------------RRLE------------R-----------AHSEGVTSLVFSRDGS 319 (512)
Q Consensus 287 i~vwd~~~~~~~------------------------~~~~------------~-----------~~~~~i~~~~~~~~~~ 319 (512)
+.+..- +...+ ..|. . .....-..++|-.||.
T Consensus 144 l~~mt~-~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~ 222 (928)
T PF04762_consen 144 LLLMTR-DFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGE 222 (928)
T ss_pred EEEEec-cceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCc
Confidence 888742 11111 0110 0 0222456788999999
Q ss_pred EEEEEeC---C---CcEEEEeCCCCceeEEeeCCccceeEEEEcCCCCEEEEEeC---CCcEEEEeCCCCceeeecCCCC
Q 010362 320 QILSTSF---D---STARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASS---DCTVKVWDLKSTDCLQTFKPPP 390 (512)
Q Consensus 320 ~l~~~~~---d---g~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~ 390 (512)
++|+.+. . ..+++|+- .|....+-..-.+--.+++|.|.|+++++.-. ...|.+|. ++|-....|..+.
T Consensus 223 yFAVss~~~~~~~~R~iRVy~R-eG~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfE-rNGLrhgeF~l~~ 300 (928)
T PF04762_consen 223 YFAVSSVEPETGSRRVIRVYSR-EGELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFE-RNGLRHGEFTLRF 300 (928)
T ss_pred EEEEEEEEcCCCceeEEEEECC-CceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEe-cCCcEeeeEecCC
Confidence 9998875 2 47899985 46655444433444457899999999988765 34577776 4454444444332
Q ss_pred CCCCCCceeEEEEEcCCCCCeEEEEcCCCcEEEEecCCeE--EEEeeCCcccCCcEEEEEECCC-CCEEEEEeCCCeEEE
Q 010362 391 PLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQV--VKSFSSGKREGGDFVAACVSPK-GEWIYCVGEDRNLYC 467 (512)
Q Consensus 391 ~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~s~~-g~~l~~g~~dg~i~i 467 (512)
......+..+.|++++ ..+++...+. |.+|...+-. ++...... ....+..+.|+|. ...+...+.+|.+..
T Consensus 301 --~~~~~~v~~l~Wn~ds-~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~-~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~ 375 (928)
T PF04762_consen 301 --DPEEEKVIELAWNSDS-EILAVWLEDR-VQLWTRSNYHWYLKQEIRFS-SSESVNFVKWDPEKPLRLHVLTSNGQYEI 375 (928)
T ss_pred --CCCCceeeEEEECCCC-CEEEEEecCC-ceEEEeeCCEEEEEEEEEcc-CCCCCCceEECCCCCCEEEEEecCCcEEE
Confidence 2345688999999998 7777766544 9999887432 22211111 1222444889885 445666666676655
Q ss_pred EEcC----CC--------eeEEec---------------c--------ccCCCeEEEEEcCCCCeEEEEECCCeEEEec
Q 010362 468 FSHQ----SG--------KLEHLM---------------K--------VHEKDVIGVTHHPHRNLLATYGEDCTMKLWK 511 (512)
Q Consensus 468 wd~~----~~--------~~~~~~---------------~--------~h~~~v~~v~~~p~~~~l~s~~~dg~i~iW~ 511 (512)
++.. .+ ..+..+ + .-..+|++++|++++..+|+...||.|.+|+
T Consensus 376 ~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~ 454 (928)
T PF04762_consen 376 YDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNSRFAVLTSDGSLSIYE 454 (928)
T ss_pred EEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCCCeEEEEECCCCEEEEE
Confidence 4432 11 011111 0 1245799999999988899999999999986
No 262
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.44 E-value=6.6e-11 Score=113.88 Aligned_cols=223 Identities=18% Similarity=0.128 Sum_probs=138.3
Q ss_pred CcCceEEEEECCCCCEEE---EEeCCC--eEEEEEcCCCeeeccccccccceeeccCcceeEEEEcCCCCeEEEEeC---
Q 010362 212 TKSHAECARFSPDGQFLV---SCSFDG--FIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQ--- 283 (512)
Q Consensus 212 h~~~v~~~~~s~~~~~l~---sg~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~--- 283 (512)
....+.+-+|||||+.++ +...+| .|.+.++.+++..... ...+.....+|+|||+.|+..+.
T Consensus 183 ~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt---------~~~g~~~~p~wSPDG~~Laf~s~~~g 253 (428)
T PRK01029 183 EHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKIL---------ALQGNQLMPTFSPRKKLLAFISDRYG 253 (428)
T ss_pred CCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEee---------cCCCCccceEECCCCCEEEEEECCCC
Confidence 445567789999997532 443343 5777788777543221 13344556899999998887653
Q ss_pred --CCeEEEEEccCC--eeeEEeccccccCeEEEEEecCCCEEEEEe-CCCc--EEEEeCCC-CceeEEeeCCccceeEEE
Q 010362 284 --DGKIKVWRIRSG--QCLRRLERAHSEGVTSLVFSRDGSQILSTS-FDST--ARIHGLKS-GKLLKEFRGHSSYVNDAI 355 (512)
Q Consensus 284 --dg~i~vwd~~~~--~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~--v~i~d~~~-~~~~~~~~~~~~~v~~~~ 355 (512)
+..+..|++.++ .....+...........+|+|||+.|+..+ .+|. |+++++.. +.....+..+...+....
T Consensus 254 ~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~ 333 (428)
T PRK01029 254 NPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPA 333 (428)
T ss_pred CcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCcccee
Confidence 223445777653 122233212223456789999999888766 4564 44445432 233444555555677899
Q ss_pred EcCCCCEEEEEeCC---CcEEEEeCCCCceeeecCCCCCCCCCCceeEEEEEcCCCCCeEEEEcC--CCcEEEEecCCeE
Q 010362 356 FTNDGSRVVTASSD---CTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNK--TSSIYIMTLQGQV 430 (512)
Q Consensus 356 ~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~--~~~i~~~~~~~~~ 430 (512)
|+|||+.|+..+.+ ..|.+||+.+++...... ....+....|+|++..++++... ...++++++.+..
T Consensus 334 wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~-------~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~ 406 (428)
T PRK01029 334 WSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTT-------SPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKK 406 (428)
T ss_pred ECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccC-------CCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCC
Confidence 99999988876543 368999998886543221 12245678899998555555543 3568888888665
Q ss_pred EEEeeCCcccCCcEEEEEECCCC
Q 010362 431 VKSFSSGKREGGDFVAACVSPKG 453 (512)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~s~~g 453 (512)
...+... .+.....+|+|-.
T Consensus 407 ~~~Lt~~---~g~~~~p~Ws~~~ 426 (428)
T PRK01029 407 TRKIVIG---SGEKRFPSWGAFP 426 (428)
T ss_pred EEEeecC---CCcccCceecCCC
Confidence 5555432 2335567777753
No 263
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.42 E-value=1.7e-11 Score=120.69 Aligned_cols=272 Identities=18% Similarity=0.216 Sum_probs=187.0
Q ss_pred CceEEEEECCCCCEEEEEeCCCeEEEEEcCCCeeeccccccccceeeccC--cceeEEEEcCCCCeEEEEeCCCeEEEEE
Q 010362 214 SHAECARFSPDGQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHD--ETVLCIEFSRDSEMLASGSQDGKIKVWR 291 (512)
Q Consensus 214 ~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~--~~v~~l~~s~~~~~l~s~~~dg~i~vwd 291 (512)
+++.+.++-. ++|.+|. --.|.+||+..+..+..+.. .+....|. +.+. -.+.+++++..-+.+..=+
T Consensus 8 ~~l~~~~~~~--~~llag~-gp~i~~yd~~s~~li~~~~~--~~~~~~H~~e~~~~-----l~~~~~v~~~~~~~v~~~~ 77 (967)
T KOG0974|consen 8 GPLNLPQLVS--DYLLAGS-GPEILVYDLSSGCLIRHLIQ--SKILEVHRGEGKVK-----LLSGKIVTCAKSDEVYVKE 77 (967)
T ss_pred ccccchhhcc--ceeeecC-CCceEEeeCCchhHhhhhhh--hcccccccccccce-----eccceEEEEEeecceeecc
Confidence 3455555544 5666655 45799999998877665432 11222340 0000 0233455555443333322
Q ss_pred ccCCeeeEEeccccccCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeeCCcc----ceeEEEEcCCCCEEEEEe
Q 010362 292 IRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRGHSS----YVNDAIFTNDGSRVVTAS 367 (512)
Q Consensus 292 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~----~v~~~~~~~~~~~l~~~~ 367 (512)
.... +.......|....+..+...++.++.++.+.+||...+.....+..... ...-+-++++.-++++|+
T Consensus 78 ~~~~-----~~~~~s~wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gs 152 (967)
T KOG0974|consen 78 ASNQ-----IIERFSDWIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGS 152 (967)
T ss_pred hhhh-----hhhhccccccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEecc
Confidence 2111 1112234444455666778899999999999999987776665543221 112233466667899999
Q ss_pred CCCcEEEEeCCCCceeeecCCCCCCCCCCceeEEEEEcCCCCCeEEEEcCCCcEEEEecCCeEEEEeeCCcccCCcEEEE
Q 010362 368 SDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQVVKSFSSGKREGGDFVAA 447 (512)
Q Consensus 368 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 447 (512)
.-+.|.+|+....+ .+..+.+|.+.+.++.++.++ .++++++.|..+++|+++...... ...-.|...+..+
T Consensus 153 v~~~iivW~~~~dn------~p~~l~GHeG~iF~i~~s~dg-~~i~s~SdDRsiRlW~i~s~~~~~-~~~fgHsaRvw~~ 224 (967)
T KOG0974|consen 153 VFGEIIVWKPHEDN------KPIRLKGHEGSIFSIVTSLDG-RYIASVSDDRSIRLWPIDSREVLG-CTGFGHSARVWAC 224 (967)
T ss_pred ccccEEEEeccccC------CcceecccCCceEEEEEccCC-cEEEEEecCcceeeeecccccccC-cccccccceeEEE
Confidence 99999999987222 222467899999999999888 999999999999999999654443 2233456789999
Q ss_pred EECCCCCEEEEEeCCCeEEEEEcCCCeeEEeccccC-CCeEEEEEcCCCCeEEEEECCCeEEEec
Q 010362 448 CVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHE-KDVIGVTHHPHRNLLATYGEDCTMKLWK 511 (512)
Q Consensus 448 ~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~-~~v~~v~~~p~~~~l~s~~~dg~i~iW~ 511 (512)
++.|+ .++++++|.+.++|+.. ++.+..+..|. +.+..++.+++....+|++.||.+++|+
T Consensus 225 ~~~~n--~i~t~gedctcrvW~~~-~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~ 286 (967)
T KOG0974|consen 225 CFLPN--RIITVGEDCTCRVWGVN-GTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWD 286 (967)
T ss_pred Eeccc--eeEEeccceEEEEEecc-cceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhh
Confidence 99999 99999999999999754 45555888885 5799999999999999999999999997
No 264
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.42 E-value=1.1e-09 Score=113.98 Aligned_cols=287 Identities=17% Similarity=0.174 Sum_probs=185.2
Q ss_pred EEEecCcCceEEEEECCCCCEEEEEeCCCeEEEEEcCCCeeec------------------------ccccc--------
Q 010362 207 TIKFGTKSHAECARFSPDGQFLVSCSFDGFIEVWDYLSGKLKK------------------------DLQYQ-------- 254 (512)
Q Consensus 207 ~~~~~h~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~------------------------~~~~~-------- 254 (512)
.+...-...|.|++||||+..||..+.+|++.+.+-+ -..+. .+...
T Consensus 114 E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~-fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~ 192 (928)
T PF04762_consen 114 EIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTRD-FDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQ 192 (928)
T ss_pred EEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEecc-ceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhh
Confidence 3333556789999999999999999999999887521 11100 00000
Q ss_pred ---------ccceeeccCcceeEEEEcCCCCeEEEEeC---C---CeEEEEEccCCeeeEEeccccccCeEEEEEecCCC
Q 010362 255 ---------ADETFMMHDETVLCIEFSRDSEMLASGSQ---D---GKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGS 319 (512)
Q Consensus 255 ---------~~~~~~~h~~~v~~l~~s~~~~~l~s~~~---d---g~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 319 (512)
....+. +...-..++|-.||.++|+.+. . ..++||+ +.|.....-+ .-.+--.+++|-|.|+
T Consensus 193 ~~~p~~~~~d~~~~s-~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~-ReG~L~stSE-~v~gLe~~l~WrPsG~ 269 (928)
T PF04762_consen 193 LRDPTVPKVDEGKLS-WDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYS-REGELQSTSE-PVDGLEGALSWRPSGN 269 (928)
T ss_pred ccCCCCCccccCccc-cCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEEC-CCceEEeccc-cCCCccCCccCCCCCC
Confidence 001122 3445678999999999998875 2 4799999 5577555444 4445556889999999
Q ss_pred EEEEEeC---CCcEEEEeCCCCceeEEee----CCccceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCcee--eecCCCC
Q 010362 320 QILSTSF---DSTARIHGLKSGKLLKEFR----GHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCL--QTFKPPP 390 (512)
Q Consensus 320 ~l~~~~~---dg~v~i~d~~~~~~~~~~~----~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~--~~~~~~~ 390 (512)
.||+... ...|.+|. ++|-....|. .....|..+.|++++..|+....|. |.+|-..+..-. +.+...
T Consensus 270 lIA~~q~~~~~~~VvFfE-rNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~- 346 (928)
T PF04762_consen 270 LIASSQRLPDRHDVVFFE-RNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFS- 346 (928)
T ss_pred EEEEEEEcCCCcEEEEEe-cCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEcc-
Confidence 9998765 34566666 3554444443 3456799999999999999877665 999987765321 122211
Q ss_pred CCCCCCceeEEEEEcCCCCCeEEEEcCCCcEEEEecCCe-------------EEE----------EeeCCc---------
Q 010362 391 PLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQ-------------VVK----------SFSSGK--------- 438 (512)
Q Consensus 391 ~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~-------------~~~----------~~~~~~--------- 438 (512)
....+..+.|+|..+..+.+.+.++.+..+++.-. .+. .+....
T Consensus 347 ----~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~ 422 (928)
T PF04762_consen 347 ----SSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYE 422 (928)
T ss_pred ----CCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceE
Confidence 12234449999998888888888777766554210 010 010000
Q ss_pred -ccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCeeE--------Eecc----------ccCCCeEEEEEcCCCCeEE
Q 010362 439 -REGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLE--------HLMK----------VHEKDVIGVTHHPHRNLLA 499 (512)
Q Consensus 439 -~~~~~~~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~--------~~~~----------~h~~~v~~v~~~p~~~~l~ 499 (512)
.-..++..++|++++..+++-..||.|.+|........ ..+. .....+..++|..+..+++
T Consensus 423 l~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 (928)
T PF04762_consen 423 LELPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLKNMWSVKPPKLLSSISLDSMDISDSELPLGSLRQLAWLNDDTLLV 502 (928)
T ss_pred EcCCCCcEEEEEeCCCCeEEEEECCCCEEEEEecCCCcccccCcchhhhcccccccccccccccccEEEEEEeCCCEEEE
Confidence 12357889999999988999999999999985432211 1111 1234577888887776666
Q ss_pred EEECC
Q 010362 500 TYGED 504 (512)
Q Consensus 500 s~~~d 504 (512)
..+.+
T Consensus 503 ~~~~~ 507 (928)
T PF04762_consen 503 LSDSD 507 (928)
T ss_pred EEecC
Confidence 55554
No 265
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.42 E-value=1.6e-11 Score=120.97 Aligned_cols=199 Identities=13% Similarity=0.182 Sum_probs=160.9
Q ss_pred cceeEEEEcCCCCeEEEEeCCCeEEEEEccCCeeeEEeccccccC---eEEEEEecCCCEEEEEeCCCcEEEEeCCCCce
Q 010362 264 ETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEG---VTSLVFSRDGSQILSTSFDSTARIHGLKSGKL 340 (512)
Q Consensus 264 ~~v~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~---i~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~ 340 (512)
..|....+.-+...++.++.+..+.+||...+.....+....... ..-+-++++.-++++|+.-+.|.+|+....+.
T Consensus 88 ~wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~ 167 (967)
T KOG0974|consen 88 DWIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNK 167 (967)
T ss_pred ccccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCC
Confidence 344445556677788888899999999998887776665222222 12233456677899999999999999874444
Q ss_pred eEEeeCCccceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeecCCCCCCCCCCceeEEEEEcCCCCCeEEEEcCCCc
Q 010362 341 LKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSS 420 (512)
Q Consensus 341 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~ 420 (512)
...+.+|.+.|-++.++.||.++++.+.|.++++|++.+.+... ....+|...+..+.+.|. .+++++.|.+
T Consensus 168 p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~-----~~~fgHsaRvw~~~~~~n---~i~t~gedct 239 (967)
T KOG0974|consen 168 PIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLG-----CTGFGHSARVWACCFLPN---RIITVGEDCT 239 (967)
T ss_pred cceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccC-----cccccccceeEEEEeccc---eeEEeccceE
Confidence 44688999999999999999999999999999999999887544 334579999999999996 8999999999
Q ss_pred EEEEecCCeEEEEeeCCcccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCC
Q 010362 421 IYIMTLQGQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQS 472 (512)
Q Consensus 421 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~dg~i~iwd~~~ 472 (512)
.++|+.++..+..+..+. ...+..++..++...+++++.||.+++||...
T Consensus 240 crvW~~~~~~l~~y~~h~--g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 240 CRVWGVNGTQLEVYDEHS--GKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred EEEEecccceehhhhhhh--hcceeEEEEcCCceEEEeeccCcchhhhhhhc
Confidence 999999888877555544 55689999999999999999999999999764
No 266
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.40 E-value=7.1e-11 Score=108.92 Aligned_cols=236 Identities=15% Similarity=0.189 Sum_probs=169.9
Q ss_pred eEEEEECCCCCEEEEEeCCCeEEEEEcCCCeeeccccccccceeeccCcceeEEEEcCCCCeEEEEeCCCeEEEEEccCC
Q 010362 216 AECARFSPDGQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSG 295 (512)
Q Consensus 216 v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~vwd~~~~ 295 (512)
|.-.-.+.|-..++.-..|.+|.+-.- .|. ...+. -...-..|+++.-..-|..++....|+-++++.|
T Consensus 97 V~feiLsDD~SK~v~L~~DR~IefHak-~G~-hy~~R---------IP~~GRDm~y~~~scDly~~gsg~evYRlNLEqG 165 (703)
T KOG2321|consen 97 VDFEILSDDYSKSVFLQNDRTIEFHAK-YGR-HYRTR---------IPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQG 165 (703)
T ss_pred eeEEEeccchhhheEeecCceeeehhh-cCe-eeeee---------cCcCCccccccCCCccEEEeecCcceEEEEcccc
Confidence 444444555555555556776665432 111 11111 1122344555543333445555567999999999
Q ss_pred eeeEEeccccccCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEee------CCcc-----ceeEEEEcCCCCEEE
Q 010362 296 QCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFR------GHSS-----YVNDAIFTNDGSRVV 364 (512)
Q Consensus 296 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~------~~~~-----~v~~~~~~~~~~~l~ 364 (512)
..+..+. ...+.++++..++-..+|++|+.+|.|-.||.++...+.++. .|.+ .|+++.|+.+|-.++
T Consensus 166 rfL~P~~-~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~a 244 (703)
T KOG2321|consen 166 RFLNPFE-TDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVA 244 (703)
T ss_pred ccccccc-cccccceeeeecCccceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEE
Confidence 9998887 566899999999999999999999999999999877665543 2333 399999999999999
Q ss_pred EEeCCCcEEEEeCCCCceeeecCCCCCCCCCCceeEEEEEcCCCCCeEEEEcCCCcEEEEecC-CeEEEEeeCCcccCCc
Q 010362 365 TASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQ-GQVVKSFSSGKREGGD 443 (512)
Q Consensus 365 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~ 443 (512)
+|+.+|.+.|||+++.+++..-. .+...+|..+.|.+.+..-.++......+++||-. |+....... ...
T Consensus 245 VGts~G~v~iyDLRa~~pl~~kd-----h~~e~pi~~l~~~~~~~q~~v~S~Dk~~~kiWd~~~Gk~~asiEp----t~~ 315 (703)
T KOG2321|consen 245 VGTSTGSVLIYDLRASKPLLVKD-----HGYELPIKKLDWQDTDQQNKVVSMDKRILKIWDECTGKPMASIEP----TSD 315 (703)
T ss_pred eeccCCcEEEEEcccCCceeecc-----cCCccceeeecccccCCCceEEecchHHhhhcccccCCceeeccc----cCC
Confidence 99999999999999987655433 23456899999988876667777778889999987 554444433 334
Q ss_pred EEEEEECCCCCEEEEEeCCCeEEEEEcCC
Q 010362 444 FVAACVSPKGEWIYCVGEDRNLYCFSHQS 472 (512)
Q Consensus 444 ~~~~~~s~~g~~l~~g~~dg~i~iwd~~~ 472 (512)
+..+|+-|++.+++++.+++.+..|=+..
T Consensus 316 lND~C~~p~sGm~f~Ane~~~m~~yyiP~ 344 (703)
T KOG2321|consen 316 LNDFCFVPGSGMFFTANESSKMHTYYIPS 344 (703)
T ss_pred cCceeeecCCceEEEecCCCcceeEEccc
Confidence 88999999999999999999888776654
No 267
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=99.39 E-value=8.1e-12 Score=103.45 Aligned_cols=169 Identities=17% Similarity=0.281 Sum_probs=120.0
Q ss_pred CccccchhhHHHHHHHHHHhcChHHHHHHHHhhcCcccc-----ccccHHHHHhhhccCCchhhhhhhcccc-----CCh
Q 010362 1 MTLEIEARDVIKIVLQFCKENSLQQTFQTLQNECQVSLN-----TVDSIETFVADINSGRWDAILPQVAQLK-----LPR 70 (512)
Q Consensus 1 ~~~~~~~~e~~~li~q~L~e~G~~~t~~~l~~Es~~~~~-----~~~~~~~~~~~i~~g~w~~~~~~l~~~~-----~~~ 70 (512)
|.++++++++++||+.||...||.++|.+|.+|+|+..+ .++.--..+.+|..|+-++|+..+.++. ...
T Consensus 20 ~~~~~~~~d~n~LVmnylv~eg~~EaA~~Fa~e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n~ 99 (228)
T KOG2659|consen 20 MKVSVMREDLNRLVMNYLVHEGYVEAAEKFAKESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTNR 99 (228)
T ss_pred hccCcchhhHHHHHHHHHHhccHHHHHHHhccccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccch
Confidence 568999999999999999999999999999999999762 2334446889999999999999887763 233
Q ss_pred hHHHHHHHHHHHHHHHcCChHHHHHHHHhcchhhhcccCChHHHHHHHHHhcccCCCcccccc--CChhhHHHHHHHHHH
Q 010362 71 NKLEDLYEQIVLEMIELRELDTARAILRQTQAMGVMKQEQPERYLRLEHLLVRTYFDAHEAYQ--DSTKERRRAQIAQAI 148 (512)
Q Consensus 71 ~~~~~l~~~~~~e~l~~~~~~~a~~~lr~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 148 (512)
.+.|.+.+|+++|++..+..++|++++|..+.+. .++.++.++.+...|.-.-++..+.-+ ..-..+.|.+++...
T Consensus 100 ~l~F~Lq~q~lIEliR~~~~eeal~F~q~~LA~~--a~e~~~~~~elE~~l~lLvf~~~~~sp~~~l~~~s~R~kvA~~v 177 (228)
T KOG2659|consen 100 ELFFHLQQLHLIELIREGKTEEALEFAQTKLAPF--AEENPKKMEELERTLALLVFELSQESPSAELLSQSLRQKVASEV 177 (228)
T ss_pred hHHHHHHHHHHHHHHHhhhHHHHHHHHHHHcccc--ccccHHHHHHHHHHHHHHHcCCcccCcHHHHHHHHHHHHHHHHH
Confidence 5789999999999999999999999999998874 444456666666555443332221111 123344565555544
Q ss_pred hccc----cccCchHHHHHHHHHHHhhh
Q 010362 149 AAEV----SVVPPSRLMALIGQALKWQQ 172 (512)
Q Consensus 149 ~~~~----~~~p~~rl~~l~~~~~~~~~ 172 (512)
...+ ......++..++ +...|.+
T Consensus 178 N~aiL~~~~~~~~~~l~~ll-k~~~~~~ 204 (228)
T KOG2659|consen 178 NSAILASQEHESEPKLPFLL-KLISWAQ 204 (228)
T ss_pred HHHHHHHhcccccchHHHHH-HHHHHHH
Confidence 4333 222345565666 5555544
No 268
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.38 E-value=6.7e-10 Score=106.39 Aligned_cols=258 Identities=17% Similarity=0.173 Sum_probs=164.6
Q ss_pred CCCEEEEEeCCCeEEEEEcCCCeeeccccccccceeeccCcceeEEEEcCCCCeEEEEeCCCeEEEEEccCCeeeEEecc
Q 010362 224 DGQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLER 303 (512)
Q Consensus 224 ~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~ 303 (512)
++..+++++.+|.+..+|..+|+........ ..+.+.-.. .+..++.++.+|.+..||..+|+.+.....
T Consensus 104 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~---------~~~~~~p~v-~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~ 173 (377)
T TIGR03300 104 DGGLVFVGTEKGEVIALDAEDGKELWRAKLS---------SEVLSPPLV-ANGLVVVRTNDGRLTALDAATGERLWTYSR 173 (377)
T ss_pred cCCEEEEEcCCCEEEEEECCCCcEeeeeccC---------ceeecCCEE-ECCEEEEECCCCeEEEEEcCCCceeeEEcc
Confidence 5677888889999999999999877654321 112111111 245677778899999999999998877652
Q ss_pred ccccCe-----EEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeeCCcc----c---eeEEEEcC--CCCEEEEEeCC
Q 010362 304 AHSEGV-----TSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRGHSS----Y---VNDAIFTN--DGSRVVTASSD 369 (512)
Q Consensus 304 ~~~~~i-----~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~----~---v~~~~~~~--~~~~l~~~~~d 369 (512)
. ...+ .+.... +..++.++.+|.+..+|.++|+.+........ . ...+.-+| .+..+++++.+
T Consensus 174 ~-~~~~~~~~~~sp~~~--~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~ 250 (377)
T TIGR03300 174 V-TPALTLRGSASPVIA--DGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQ 250 (377)
T ss_pred C-CCceeecCCCCCEEE--CCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcC
Confidence 1 1111 111122 34678888889999999999987765432100 0 00011111 34578888889
Q ss_pred CcEEEEeCCCCceeeecCCCCCCCCCCceeEEEEEcCCCCCeEEEEcCCCcEEEEecC-CeEEEEeeCCcccCCcEEEEE
Q 010362 370 CTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQ-GQVVKSFSSGKREGGDFVAAC 448 (512)
Q Consensus 370 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 448 (512)
|.+..||..+++......... ...... .+ ..+++++.+|.++.+|.. +..+....... ........
T Consensus 251 g~l~a~d~~tG~~~W~~~~~~--------~~~p~~--~~-~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~--~~~~ssp~ 317 (377)
T TIGR03300 251 GRVAALDLRSGRVLWKRDASS--------YQGPAV--DD-NRLYVTDADGVVVALDRRSGSELWKNDELK--YRQLTAPA 317 (377)
T ss_pred CEEEEEECCCCcEEEeeccCC--------ccCceE--eC-CEEEEECCCCeEEEEECCCCcEEEcccccc--CCccccCE
Confidence 999999999998776554111 111111 22 677888899999999997 44443331111 11111112
Q ss_pred ECCCCCEEEEEeCCCeEEEEEcCCCeeEEeccccCCCeEE-EEEcCCCCeEEEEECCCeEEEec
Q 010362 449 VSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIG-VTHHPHRNLLATYGEDCTMKLWK 511 (512)
Q Consensus 449 ~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~-v~~~p~~~~l~s~~~dg~i~iW~ 511 (512)
. .+..+++++.+|.|+++|..+|+.+..++.+...+.. ..+. + ..|+.++.||.|..|.
T Consensus 318 i--~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~~~~~~~sp~~~-~-~~l~v~~~dG~l~~~~ 377 (377)
T TIGR03300 318 V--VGGYLVVGDFEGYLHWLSREDGSFVARLKTDGSGIASPPVVV-G-DGLLVQTRDGDLYAFR 377 (377)
T ss_pred E--ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCccccCCEEE-C-CEEEEEeCCceEEEeC
Confidence 2 4678999999999999999999999888766644322 2222 3 4577889999998763
No 269
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.38 E-value=3.1e-12 Score=131.97 Aligned_cols=223 Identities=16% Similarity=0.208 Sum_probs=172.4
Q ss_pred cCcceeEEEEcCCCCeEEEEeCCCeEEEEEccCCeeeEEeccccccCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCcee
Q 010362 262 HDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLL 341 (512)
Q Consensus 262 h~~~v~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~ 341 (512)
+-..|.++.=+|...+-+||+.||.|++|....++.+..+.......|+.+.|+.+|+.+..+..||.+.+|.+. .++.
T Consensus 2207 ~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-pk~~ 2285 (2439)
T KOG1064|consen 2207 PVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-PKPY 2285 (2439)
T ss_pred ccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC-Ccce
Confidence 556788999999999999999999999999999998888876667899999999999999999999999999985 7788
Q ss_pred EEeeCCccceeEEEEcCCCCEEEEEe---CCCcEEEEeCCCCceeeecCCCCCCCCCCceeEEEEEcCCCCCeEEEEcCC
Q 010362 342 KEFRGHSSYVNDAIFTNDGSRVVTAS---SDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKT 418 (512)
Q Consensus 342 ~~~~~~~~~v~~~~~~~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~ 418 (512)
...+.|+....+..|-. ..+++++ .++.+.+||..-.....-+. .+|...++++++.|.. .++++|+.+
T Consensus 2286 ~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~-----~~H~~gaT~l~~~P~~-qllisggr~ 2357 (2439)
T KOG1064|consen 2286 TSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVH-----TCHDGGATVLAYAPKH-QLLISGGRK 2357 (2439)
T ss_pred eccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceee-----eecCCCceEEEEcCcc-eEEEecCCc
Confidence 88889999888888875 4566654 46889999965332111111 4789999999999988 899999999
Q ss_pred CcEEEEecCCeEEEEeeCCcccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCeeEEeccc---cCCC--e--EEEEE
Q 010362 419 SSIYIMTLQGQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKV---HEKD--V--IGVTH 491 (512)
Q Consensus 419 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~---h~~~--v--~~v~~ 491 (512)
|.+++||++.+.+...... +. ...++++|+..|.++||++..-.++..+.. |.+- . ..+-.
T Consensus 2358 G~v~l~D~rqrql~h~~~~-----------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p~e~ak~gfFr~~g~Q~~v 2425 (2439)
T KOG1064|consen 2358 GEVCLFDIRQRQLRHTFQA-----------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFPSEHAKQGFFRNIGMQINV 2425 (2439)
T ss_pred CcEEEeehHHHHHHHHhhh-----------hh-hhheeeccCcccceEEEEccccchhhcCchhhcccchhhhcCceeee
Confidence 9999999985443222111 33 567899999999999999988777766652 1111 1 12222
Q ss_pred cCCCCeEEEEECCCe
Q 010362 492 HPHRNLLATYGEDCT 506 (512)
Q Consensus 492 ~p~~~~l~s~~~dg~ 506 (512)
. ..+.|.+|+.||+
T Consensus 2426 ~-~~nrifsCgad~~ 2439 (2439)
T KOG1064|consen 2426 G-QCNRIFSCGADGT 2439 (2439)
T ss_pred c-cCceEEEecCCCC
Confidence 2 2456778888874
No 270
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.37 E-value=3.6e-12 Score=116.80 Aligned_cols=285 Identities=13% Similarity=0.187 Sum_probs=184.1
Q ss_pred ecCcCceEEEEECCCCCEEEEEeCCCeEEEEEcCCCeeeccccccccceeeccCcceeEEEEcCCCCeEEEEeCCCeEEE
Q 010362 210 FGTKSHAECARFSPDGQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQDGKIKV 289 (512)
Q Consensus 210 ~~h~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~v 289 (512)
.||...|..++--.+.+-+++++.|.+|++|.+....-.. -...+..++..|+.+|.++.|-.+.++++++ ||.|.+
T Consensus 732 ~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~-~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~giHl 808 (1034)
T KOG4190|consen 732 TGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEI-GTSACQFTYQAHKKPIHDIGFLADLRSIASC--DGGIHL 808 (1034)
T ss_pred cCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCcc-ccceeeeEhhhccCcccceeeeeccceeeec--cCccee
Confidence 3899999888877788889999999999999986432111 1112344677799999999999998888876 789999
Q ss_pred EEccCCeeeEEecc-ccccCeEEEEEecC--CCEEEEE-eCCCcEEEEeCCCCceeEEeeC-----CccceeEEEEcCCC
Q 010362 290 WRIRSGQCLRRLER-AHSEGVTSLVFSRD--GSQILST-SFDSTARIHGLKSGKLLKEFRG-----HSSYVNDAIFTNDG 360 (512)
Q Consensus 290 wd~~~~~~~~~~~~-~~~~~i~~~~~~~~--~~~l~~~-~~dg~v~i~d~~~~~~~~~~~~-----~~~~v~~~~~~~~~ 360 (512)
||.--|..+..+.. ...+.+..+...|+ ...+++| +...+|+++|.+.++....++. .+..+.+++..+.|
T Consensus 809 WDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~G 888 (1034)
T KOG4190|consen 809 WDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVADKG 888 (1034)
T ss_pred ecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEeccCc
Confidence 99988877664432 22333444444443 3444444 6788999999999887776653 34568899999999
Q ss_pred CEEEEEeCCCcEEEEeCCCCceeeecCCCCCCCCCCceeEEEEEcCCCCCeEEEEcCCCcEEE-EecCCeEEEEeeCCcc
Q 010362 361 SRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYI-MTLQGQVVKSFSSGKR 439 (512)
Q Consensus 361 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~-~~~~~~~~~~~~~~~~ 439 (512)
++++.+-.+|.|.+.|.++|+.+..+.+..- ....++ .|.+ ..++....|..+.+ |-...+..........
T Consensus 889 N~lAa~LSnGci~~LDaR~G~vINswrpmec------dllqla-apsd-q~L~~saldHslaVnWhaldgimh~q~kppp 960 (1034)
T KOG4190|consen 889 NKLAAALSNGCIAILDARNGKVINSWRPMEC------DLLQLA-APSD-QALAQSALDHSLAVNWHALDGIMHLQDKPPP 960 (1034)
T ss_pred chhhHHhcCCcEEEEecCCCceeccCCcccc------hhhhhc-Cchh-HHHHhhcccceeEeeehhcCCeeeeccCCCC
Confidence 9999999999999999999998887764320 111111 1222 44555555666665 5544332222111111
Q ss_pred cCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCC----CeeEEecc--ccCCCeEEEEEcCCCCeEEEEECCCeEEE
Q 010362 440 EGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQS----GKLEHLMK--VHEKDVIGVTHHPHRNLLATYGEDCTMKL 509 (512)
Q Consensus 440 ~~~~~~~~~~s~~g~~l~~g~~dg~i~iwd~~~----~~~~~~~~--~h~~~v~~v~~~p~~~~l~s~~~dg~i~i 509 (512)
... -..-.-|.-+++......+.+|.-.. ...+..+. ...+..++++.-|-+.-+..|...|.|.+
T Consensus 961 epa----hflqsvgpSLV~a~~Gn~lgVYad~a~~ha~stitKiR~d~f~G~lTala~LPLN~afLaGne~G~IaL 1032 (1034)
T KOG4190|consen 961 EPA----HFLQSVGPSLVTAQNGNILGVYADSAELHAESTITKIRPDEFPGTLTALAPLPLNCAFLAGNEHGAIAL 1032 (1034)
T ss_pred cch----hhhhccCceeEEeccCcEEEEEecchhhhhhhhhccccccccCCccceeeeccccchhhccCCCCceee
Confidence 110 01112345566666666666764211 01111222 13466788888897777777888888875
No 271
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.37 E-value=8.4e-12 Score=118.19 Aligned_cols=289 Identities=17% Similarity=0.230 Sum_probs=195.7
Q ss_pred eEEEecCcCceEEEEECCCCCEEEEEeCCCeEEEEEcCCCeeeccccccccceeecc--CcceeEEEEcCCC---CeEEE
Q 010362 206 HTIKFGTKSHAECARFSPDGQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMH--DETVLCIEFSRDS---EMLAS 280 (512)
Q Consensus 206 ~~~~~~h~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h--~~~v~~l~~s~~~---~~l~s 280 (512)
+.+...-.+.+..+..+|.|+-+|.++.-| +.+-|+...-.... +..| .-.|-.+.|+|.. ..+++
T Consensus 17 kslsl~v~~~~~a~si~p~grdi~lAsr~g-l~i~dld~p~~ppr--------~l~h~tpw~vad~qws~h~a~~~wiVs 87 (1081)
T KOG0309|consen 17 KSLSLKVDGGFNAVSINPSGRDIVLASRQG-LYIIDLDDPFTPPR--------WLHHITPWQVADVQWSPHPAKPYWIVS 87 (1081)
T ss_pred ceeEEEecCcccceeeccccchhhhhhhcC-eEEEeccCCCCCce--------eeeccCcchhcceecccCCCCceeEEe
Confidence 334445567788999999999999999777 44556554321111 1113 2347778888843 24444
Q ss_pred EeCCCeEEEEEccC--CeeeEEeccccccCeEEEEEecCC-CEEEEEeCCCcEEEEeCCCCc-eeEEeeCCccceeEEEE
Q 010362 281 GSQDGKIKVWRIRS--GQCLRRLERAHSEGVTSLVFSRDG-SQILSTSFDSTARIHGLKSGK-LLKEFRGHSSYVNDAIF 356 (512)
Q Consensus 281 ~~~dg~i~vwd~~~--~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~v~i~d~~~~~-~~~~~~~~~~~v~~~~~ 356 (512)
.+ ...-.+|++.. ...+.-+..+|...|+.+.|+|.. ..+++++.|..+..||+++.. ++..+..-...-..++|
T Consensus 88 ts-~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkw 166 (1081)
T KOG0309|consen 88 TS-NQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKW 166 (1081)
T ss_pred cC-cchhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeee
Confidence 44 45567888753 344555556899999999999954 578899999999999998864 45555555556778999
Q ss_pred cCCCCEEEEEeCCCcEEEEeCCCCce-eeecCCCCCCCCCCceeEEEEEcCCCCCeEEEEcCCCcEEEEecCCeEEEEee
Q 010362 357 TNDGSRVVTASSDCTVKVWDLKSTDC-LQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQVVKSFS 435 (512)
Q Consensus 357 ~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~ 435 (512)
+-....+.+.+....|.+||++.+.. ...++ ++...++++.+.......+.+++.|+.+.+||........-.
T Consensus 167 nyk~p~vlasshg~~i~vwd~r~gs~pl~s~K------~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~ 240 (1081)
T KOG0309|consen 167 NYKDPNVLASSHGNDIFVWDLRKGSTPLCSLK------GHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKR 240 (1081)
T ss_pred cccCcchhhhccCCceEEEeccCCCcceEEec------ccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccce
Confidence 87655566666777899999998753 33333 467788888888777788999999999999999843222111
Q ss_pred CCcccCCcEEEEEECCCCCEEEE--EeCCCeEEEEEcC---------C-CeeEEeccccCCCeEEEEEcCCC--------
Q 010362 436 SGKREGGDFVAACVSPKGEWIYC--VGEDRNLYCFSHQ---------S-GKLEHLMKVHEKDVIGVTHHPHR-------- 495 (512)
Q Consensus 436 ~~~~~~~~~~~~~~s~~g~~l~~--g~~dg~i~iwd~~---------~-~~~~~~~~~h~~~v~~v~~~p~~-------- 495 (512)
.. ....++...++-|-|.-.+. .-.+..+.+++.+ + .+++..+.||.+.|....|-..+
T Consensus 241 ~v-tt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~ 319 (1081)
T KOG0309|consen 241 TV-TTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDS 319 (1081)
T ss_pred ec-cccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCc
Confidence 11 12345667777775443322 2223344444433 2 35788999999998888776432
Q ss_pred --CeEEEEECCCeEEEec
Q 010362 496 --NLLATYGEDCTMKLWK 511 (512)
Q Consensus 496 --~~l~s~~~dg~i~iW~ 511 (512)
-.|+|-|.|.++++|-
T Consensus 320 rdfQLVTWSkD~~lrlWp 337 (1081)
T KOG0309|consen 320 RDFQLVTWSKDQTLRLWP 337 (1081)
T ss_pred cceeEEEeecCCceEeee
Confidence 2799999999999995
No 272
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.36 E-value=7.3e-10 Score=100.10 Aligned_cols=152 Identities=16% Similarity=0.204 Sum_probs=122.9
Q ss_pred ceEEEecCcCceEEEEECCCCCEEEEEeCCC-eEEEEEcCCCeeeccccccccceeeccCcceeEEEEcCCCCeEEEEeC
Q 010362 205 SHTIKFGTKSHAECARFSPDGQFLVSCSFDG-FIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQ 283 (512)
Q Consensus 205 ~~~~~~~h~~~v~~~~~s~~~~~l~sg~~dg-~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~ 283 (512)
-.+++.+|.+.|.-..+.-+++-++.|..|| .+.|+|..+++..... ..-+.|.++..+|+|++++.+..
T Consensus 351 ~~~iqv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e---------~~lg~I~av~vs~dGK~~vvaNd 421 (668)
T COG4946 351 GYSIQVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIE---------KDLGNIEAVKVSPDGKKVVVAND 421 (668)
T ss_pred CeeEEcCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEee---------CCccceEEEEEcCCCcEEEEEcC
Confidence 3567779999999999999999999999999 9999999988765432 25678999999999999999998
Q ss_pred CCeEEEEEccCCeeeEEeccccccCeEEEEEecCCCEEEEEeCCC----cEEEEeCCCCceeEEeeCCccceeEEEEcCC
Q 010362 284 DGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDS----TARIHGLKSGKLLKEFRGHSSYVNDAIFTND 359 (512)
Q Consensus 284 dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg----~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~ 359 (512)
...+.+.|+++|... .+.....+-|+.+.|+|+++.+|.+--+| .|+++|+..++...... ..+.=.+-+|.|+
T Consensus 422 r~el~vididngnv~-~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT-~ta~DfsPaFD~d 499 (668)
T COG4946 422 RFELWVIDIDNGNVR-LIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTT-PTAYDFSPAFDPD 499 (668)
T ss_pred ceEEEEEEecCCCee-EecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecC-CcccccCcccCCC
Confidence 899999999999854 44446778899999999999999887665 68999998877655433 2333345688999
Q ss_pred CCEEEEEe
Q 010362 360 GSRVVTAS 367 (512)
Q Consensus 360 ~~~l~~~~ 367 (512)
+++|.--+
T Consensus 500 ~ryLYfLs 507 (668)
T COG4946 500 GRYLYFLS 507 (668)
T ss_pred CcEEEEEe
Confidence 99876543
No 273
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.35 E-value=3e-09 Score=101.90 Aligned_cols=265 Identities=12% Similarity=0.132 Sum_probs=166.4
Q ss_pred CCCEEEEEeCCCeEEEEEcCCCeeeccccccccceeeccCcceeEEEEcCCCCeEEEEeCCCeEEEEEccCCeeeEEecc
Q 010362 224 DGQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLER 303 (512)
Q Consensus 224 ~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~ 303 (512)
.+..+++++.+|.|.-+|..+|+......... ....... .++..++.++.+|.+..+|..+|+.+.+...
T Consensus 64 ~~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~--------~~~~~p~--v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~ 133 (377)
T TIGR03300 64 AGGKVYAADADGTVVALDAETGKRLWRVDLDE--------RLSGGVG--ADGGLVFVGTEKGEVIALDAEDGKELWRAKL 133 (377)
T ss_pred ECCEEEEECCCCeEEEEEccCCcEeeeecCCC--------CcccceE--EcCCEEEEEcCCCEEEEEECCCCcEeeeecc
Confidence 46688888889999999999998876544321 1111122 2466788888999999999999998877652
Q ss_pred ccccCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeeCCccce-----eEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 010362 304 AHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYV-----NDAIFTNDGSRVVTASSDCTVKVWDLK 378 (512)
Q Consensus 304 ~~~~~i~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v-----~~~~~~~~~~~l~~~~~dg~i~iwd~~ 378 (512)
...+.+.-.. .+..++.++.+|.++.+|.++++.+..+....... .+.... +..++.+..+|.+..+|.+
T Consensus 134 --~~~~~~~p~v-~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~--~~~v~~~~~~g~v~ald~~ 208 (377)
T TIGR03300 134 --SSEVLSPPLV-ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA--DGGVLVGFAGGKLVALDLQ 208 (377)
T ss_pred --CceeecCCEE-ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE--CCEEEEECCCCEEEEEEcc
Confidence 2222211111 34577788889999999999999888776433211 111121 2467788888999999999
Q ss_pred CCceeeecCCCCCCCCC-CceeEEEEEcCC-CCCeEEEEcCCCcEEEEecC-CeEEEEeeCCcccCCcEEEEEECCCCCE
Q 010362 379 STDCLQTFKPPPPLRGG-DASVNSVHLFPK-NPDHIVVCNKTSSIYIMTLQ-GQVVKSFSSGKREGGDFVAACVSPKGEW 455 (512)
Q Consensus 379 ~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~-~~~~l~~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~s~~g~~ 455 (512)
+++.............. ......+.-.|. ....+++++.++.++.+|.. +......... .... ...++..
T Consensus 209 tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~-----~~~~--p~~~~~~ 281 (377)
T TIGR03300 209 TGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRDAS-----SYQG--PAVDDNR 281 (377)
T ss_pred CCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEeeccC-----CccC--ceEeCCE
Confidence 99876553321110000 000000000110 12577888889999999997 4443332211 1111 1235778
Q ss_pred EEEEeCCCeEEEEEcCCCeeEEeccccC-CCeEEEEEcCCCCeEEEEECCCeEEEecC
Q 010362 456 IYCVGEDRNLYCFSHQSGKLEHLMKVHE-KDVIGVTHHPHRNLLATYGEDCTMKLWKP 512 (512)
Q Consensus 456 l~~g~~dg~i~iwd~~~~~~~~~~~~h~-~~v~~v~~~p~~~~l~s~~~dg~i~iW~~ 512 (512)
+++++.+|.++.+|..+|+.+....... ....+... .+..+++++.||.|.+||+
T Consensus 282 vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d~ 337 (377)
T TIGR03300 282 LYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAV--VGGYLVVGDFEGYLHWLSR 337 (377)
T ss_pred EEEECCCCeEEEEECCCCcEEEccccccCCccccCEE--ECCEEEEEeCCCEEEEEEC
Confidence 8889999999999999998776553211 11222222 4668888999999999875
No 274
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.34 E-value=2.6e-09 Score=113.33 Aligned_cols=243 Identities=9% Similarity=0.117 Sum_probs=162.6
Q ss_pred eEEEEcCC-CCeEEEEeCCCeEEEEEccCCeeeEEecc-cc------------ccCeEEEEEecCCCEEEEEeC-CCcEE
Q 010362 267 LCIEFSRD-SEMLASGSQDGKIKVWRIRSGQCLRRLER-AH------------SEGVTSLVFSRDGSQILSTSF-DSTAR 331 (512)
Q Consensus 267 ~~l~~s~~-~~~l~s~~~dg~i~vwd~~~~~~~~~~~~-~~------------~~~i~~~~~~~~~~~l~~~~~-dg~v~ 331 (512)
..++++++ +.++++-+.++.|++||.. +..+..+.. +. -.....+++.++++.|+++.. ++.|+
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir 649 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALR 649 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEE
Confidence 46888875 5566666778899999975 444443321 11 123678999998887766654 56799
Q ss_pred EEeCCCCceeEEeeCC-----------------ccceeEEEEcC-CCCEEEEEeCCCcEEEEeCCCCceeeecCCCC---
Q 010362 332 IHGLKSGKLLKEFRGH-----------------SSYVNDAIFTN-DGSRVVTASSDCTVKVWDLKSTDCLQTFKPPP--- 390 (512)
Q Consensus 332 i~d~~~~~~~~~~~~~-----------------~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~--- 390 (512)
.+|..++. +.++.+. -.....++++| ++..+++.+.++.|++||..++.... +....
T Consensus 650 ~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~-~~G~G~~~ 727 (1057)
T PLN02919 650 EIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRV-FSGDGYER 727 (1057)
T ss_pred EEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEE-EecCCccc
Confidence 99986654 3333210 11346799999 55666777778999999988765421 11100
Q ss_pred ------CCCCCCceeEEEEEcCCCCCeEEEEcCCCcEEEEecCCeEEEEeeCCc------------c-------cCCcEE
Q 010362 391 ------PLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQVVKSFSSGK------------R-------EGGDFV 445 (512)
Q Consensus 391 ------~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~------------~-------~~~~~~ 445 (512)
.....-.....++++|++..++++...++.|++||..+.......... . .-....
T Consensus 728 ~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~ 807 (1057)
T PLN02919 728 NLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPL 807 (1057)
T ss_pred cCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCc
Confidence 000112345679999998667788888899999998743222111100 0 011245
Q ss_pred EEEECCCCCEEEEEeCCCeEEEEEcCCCeeEEecc-------------ccCCCeEEEEEcCCCCeEEEEECCCeEEEecC
Q 010362 446 AACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMK-------------VHEKDVIGVTHHPHRNLLATYGEDCTMKLWKP 512 (512)
Q Consensus 446 ~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~~-------------~h~~~v~~v~~~p~~~~l~s~~~dg~i~iW~~ 512 (512)
.++++++|+.+++-+.++.|++||..++....... +.-.....|+++++|+++++-+.+++|++||+
T Consensus 808 Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~ 887 (1057)
T PLN02919 808 GVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDL 887 (1057)
T ss_pred eeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEEC
Confidence 78999999988888899999999998876653321 11235778999999999999999999999984
No 275
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.32 E-value=1.7e-09 Score=98.64 Aligned_cols=268 Identities=17% Similarity=0.215 Sum_probs=177.4
Q ss_pred CceEEEEECCCCCEEEEEeCCC---------------eEEEEEcCCCeeeccccccccc---------------------
Q 010362 214 SHAECARFSPDGQFLVSCSFDG---------------FIEVWDYLSGKLKKDLQYQADE--------------------- 257 (512)
Q Consensus 214 ~~v~~~~~s~~~~~l~sg~~dg---------------~i~iwd~~~~~~~~~~~~~~~~--------------------- 257 (512)
..|..+.|||.+++|.+-+..+ .+.+||+.+|..+..+......
T Consensus 72 ~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv~ 151 (561)
T COG5354 72 PDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVVG 151 (561)
T ss_pred CCceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhcc
Confidence 3488999999999999876443 4999999988776654432221
Q ss_pred -eeeccC---------------cceeEEEEcCCC--CeEEE-----EeCCCeEEEEEccCCeeeEEeccccccCeEEEEE
Q 010362 258 -TFMMHD---------------ETVLCIEFSRDS--EMLAS-----GSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVF 314 (512)
Q Consensus 258 -~~~~h~---------------~~v~~l~~s~~~--~~l~s-----~~~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~ 314 (512)
.+.-|. ..|....|+|.+ ..||. .+.++.+++|.+..+..+.+-. -....=..+.|
T Consensus 152 ~sl~i~e~t~n~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~-lfk~~~~qLkW 230 (561)
T COG5354 152 SSLYIHEITDNIEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKN-LFKVSGVQLKW 230 (561)
T ss_pred CeEEEEecCCccccCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeee-eEeecccEEEE
Confidence 111122 456777888853 33443 3567889999988776655443 23444457889
Q ss_pred ecCCCEEEEEe-----------CCCcEEEEeCCCCceeEEeeCCccceeEEEEcCCCCEEEEE--eCCCcEEEEeCCCCc
Q 010362 315 SRDGSQILSTS-----------FDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTA--SSDCTVKVWDLKSTD 381 (512)
Q Consensus 315 ~~~~~~l~~~~-----------~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~--~~dg~i~iwd~~~~~ 381 (512)
++.|+++++-. ....++++++.... +.......++|.+.+|.|.++.+++. -.+..+.++|++..
T Consensus 231 ~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~-i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N- 308 (561)
T COG5354 231 QVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERS-IPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN- 308 (561)
T ss_pred ecCCceEEEEEEEeeecccceeccceEEEEeecccc-cceeccccccceeeeecccCCceeEEecccccceeecccccc-
Confidence 99998876431 12567888886333 33333567899999999988877654 46788999999876
Q ss_pred eeeecCCCCCCCCCCceeEEEEEcCCCCCeEEEEc---CCCcEEEEecCCeEEEE-eeCCcccCCcEEEEEECCCCCEEE
Q 010362 382 CLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCN---KTSSIYIMTLQGQVVKS-FSSGKREGGDFVAACVSPKGEWIY 457 (512)
Q Consensus 382 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~---~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~s~~g~~l~ 457 (512)
....++ ...-+.+.|+|.. .++++++ ..|.+.+|+..++.... ... ......+.|+|||+++.
T Consensus 309 l~~~~P--------e~~rNT~~fsp~~-r~il~agF~nl~gni~i~~~~~rf~~~~~~~----~~n~s~~~wspd~qF~~ 375 (561)
T COG5354 309 LRFYFP--------EQKRNTIFFSPHE-RYILFAGFDNLQGNIEIFDPAGRFKVAGAFN----GLNTSYCDWSPDGQFYD 375 (561)
T ss_pred eEEecC--------CcccccccccCcc-cEEEEecCCccccceEEeccCCceEEEEEee----cCCceEeeccCCceEEE
Confidence 333332 2234567788887 4554433 45789999998765443 222 22355678999999998
Q ss_pred EEe------CCCeEEEEEcCCCeeEEeccccCCCeEEEEEcCCCCeEEEEECCC
Q 010362 458 CVG------EDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPHRNLLATYGEDC 505 (512)
Q Consensus 458 ~g~------~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~~~dg 505 (512)
+.. .|..|.+||+.....- ..+.+.|.|.+++..+.+.+.
T Consensus 376 ~~~ts~k~~~Dn~i~l~~v~g~~~f--------el~~~~W~p~~~~~ttsSs~~ 421 (561)
T COG5354 376 TDTTSEKLRVDNSIKLWDVYGAKVF--------ELTNITWDPSGQYVTTSSSCP 421 (561)
T ss_pred ecCCCcccccCcceEEEEecCchhh--------hhhhccccCCcccceeeccCC
Confidence 775 3778999998654322 455677888777666665544
No 276
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=99.31 E-value=5.6e-09 Score=91.98 Aligned_cols=239 Identities=18% Similarity=0.280 Sum_probs=161.6
Q ss_pred EEEEECC-CCCEEEEEeCCC-eEEEEEcCCCeeeccccccccceeeccCcceeEEEEcCCCCeEEEEeC-----CCeEEE
Q 010362 217 ECARFSP-DGQFLVSCSFDG-FIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQ-----DGKIKV 289 (512)
Q Consensus 217 ~~~~~s~-~~~~l~sg~~dg-~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~-----dg~i~v 289 (512)
..++.+| ++..++.+-.-| ...+||..+++....+...+.+.|.||. .||+||++|++.-. .|.|-|
T Consensus 8 H~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg------~fs~dG~~LytTEnd~~~g~G~IgV 81 (305)
T PF07433_consen 8 HGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHG------VFSPDGRLLYTTENDYETGRGVIGV 81 (305)
T ss_pred cceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCE------EEcCCCCEEEEeccccCCCcEEEEE
Confidence 3577888 566677776666 4778999999999888888888999995 69999999998744 479999
Q ss_pred EEcc-CCeeeEEeccccccCeEEEEEecCCCEEEEEe------------------CCCcEEEEeCCCCceeEEee----C
Q 010362 290 WRIR-SGQCLRRLERAHSEGVTSLVFSRDGSQILSTS------------------FDSTARIHGLKSGKLLKEFR----G 346 (512)
Q Consensus 290 wd~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~------------------~dg~v~i~d~~~~~~~~~~~----~ 346 (512)
||.. +-+.+..+. .+.-....+.+.|||+.|+++. .+..+...|..+|+.+.... .
T Consensus 82 yd~~~~~~ri~E~~-s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~ 160 (305)
T PF07433_consen 82 YDAARGYRRIGEFP-SHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDL 160 (305)
T ss_pred EECcCCcEEEeEec-CCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccc
Confidence 9998 556677776 5666677888999998888763 22345566777787776633 2
Q ss_pred CccceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeecCCCCCCCCCCceeEEEEEcCCCCCeEEEEcCCCcEEEEec
Q 010362 347 HSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTL 426 (512)
Q Consensus 347 ~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~~~~ 426 (512)
|...|..+++.++|..++..-..| .... ...+++.-..++.+.....
T Consensus 161 ~~lSiRHLa~~~~G~V~~a~Q~qg-------~~~~--------------------------~~PLva~~~~g~~~~~~~~ 207 (305)
T PF07433_consen 161 HQLSIRHLAVDGDGTVAFAMQYQG-------DPGD--------------------------APPLVALHRRGGALRLLPA 207 (305)
T ss_pred cccceeeEEecCCCcEEEEEecCC-------CCCc--------------------------cCCeEEEEcCCCcceeccC
Confidence 666788888888876444433222 0000 0123333333333333333
Q ss_pred CCeEEEEeeCCcccCCcEEEEEECCCCCEEEEEe-CCCeEEEEEcCCCeeEEeccccCCCeEEEEEcCCCCeEEEEECC
Q 010362 427 QGQVVKSFSSGKREGGDFVAACVSPKGEWIYCVG-EDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPHRNLLATYGED 504 (512)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~-~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~~~d 504 (512)
...... .-.+.+-+++++++|.++++.+ ..|.+.+||..++.++....-. .+..++..+++ +++|.+..
T Consensus 208 p~~~~~------~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l~--D~cGva~~~~~-f~~ssG~G 277 (305)
T PF07433_consen 208 PEEQWR------RLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVPLP--DACGVAPTDDG-FLVSSGQG 277 (305)
T ss_pred ChHHHH------hhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeeccccC--ceeeeeecCCc-eEEeCCCc
Confidence 211111 1235678899999999887766 6778999999999988776543 46677776666 66665543
No 277
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.31 E-value=6.7e-09 Score=110.33 Aligned_cols=255 Identities=9% Similarity=0.030 Sum_probs=162.7
Q ss_pred EEEEECCC-CCEEEEEeCCCeEEEEEcCCCeeeccccc-cccce-----eeccCcceeEEEEcCCCCeEEEEeC-CCeEE
Q 010362 217 ECARFSPD-GQFLVSCSFDGFIEVWDYLSGKLKKDLQY-QADET-----FMMHDETVLCIEFSRDSEMLASGSQ-DGKIK 288 (512)
Q Consensus 217 ~~~~~s~~-~~~l~sg~~dg~i~iwd~~~~~~~~~~~~-~~~~~-----~~~h~~~v~~l~~s~~~~~l~s~~~-dg~i~ 288 (512)
..++++++ |+++++-+.++.|.+||.... ....+.. ..... -..+-.....+++.++++.|+++.. ++.|+
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G~-~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir 649 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDGN-FIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALR 649 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCCC-EEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEE
Confidence 35788874 567777778889999997543 3222111 00000 0012234688999998887666654 56899
Q ss_pred EEEccCCeeeEEeccc-c---------------ccCeEEEEEec-CCCEEEEEeCCCcEEEEeCCCCceeEEeeCC----
Q 010362 289 VWRIRSGQCLRRLERA-H---------------SEGVTSLVFSR-DGSQILSTSFDSTARIHGLKSGKLLKEFRGH---- 347 (512)
Q Consensus 289 vwd~~~~~~~~~~~~~-~---------------~~~i~~~~~~~-~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~---- 347 (512)
++|+.++. +.++... . -.....++++| ++..+++.+.++.|++||..++... .+.+.
T Consensus 650 ~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~~G~G~~~ 727 (1057)
T PLN02919 650 EIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VFSGDGYER 727 (1057)
T ss_pred EEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-EEecCCccc
Confidence 99987765 3333110 0 12346899999 5556666677889999998766432 22111
Q ss_pred -----------ccceeEEEEcCCCCEE-EEEeCCCcEEEEeCCCCceeeecCC-----C--CCCC--------CCCceeE
Q 010362 348 -----------SSYVNDAIFTNDGSRV-VTASSDCTVKVWDLKSTDCLQTFKP-----P--PPLR--------GGDASVN 400 (512)
Q Consensus 348 -----------~~~v~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~-----~--~~~~--------~~~~~i~ 400 (512)
-.....++++|+++.| ++-+.++.|++||+.++........ . .... ..-....
T Consensus 728 ~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~ 807 (1057)
T PLN02919 728 NLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPL 807 (1057)
T ss_pred cCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCc
Confidence 1235679999999855 4555678999999987653211000 0 0000 0112346
Q ss_pred EEEEcCCCCCeEEEEcCCCcEEEEecCCeEEEEeeCCcc-----------cCCcEEEEEECCCCCEEEEEeCCCeEEEEE
Q 010362 401 SVHLFPKNPDHIVVCNKTSSIYIMTLQGQVVKSFSSGKR-----------EGGDFVAACVSPKGEWIYCVGEDRNLYCFS 469 (512)
Q Consensus 401 ~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~s~~g~~l~~g~~dg~i~iwd 469 (512)
++++.+++ .++++...++.|++||..+..+..+..... .-.....++++++|+.+++-+.++.|++||
T Consensus 808 Gvavd~dG-~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid 886 (1057)
T PLN02919 808 GVLCAKDG-QIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLD 886 (1057)
T ss_pred eeeEeCCC-cEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEE
Confidence 78888887 688888899999999998665554432110 112456899999999888888999999999
Q ss_pred cCCCee
Q 010362 470 HQSGKL 475 (512)
Q Consensus 470 ~~~~~~ 475 (512)
+.+++.
T Consensus 887 ~~~~~~ 892 (1057)
T PLN02919 887 LNKGEA 892 (1057)
T ss_pred CCCCcc
Confidence 988764
No 278
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.30 E-value=1.5e-09 Score=90.91 Aligned_cols=245 Identities=10% Similarity=-0.003 Sum_probs=156.1
Q ss_pred EEEEECC-----CCCEEEEEeCCCeEEEEEcCCCeeeccccccccceeeccCcceeEEEEcC-CCCeEEEEeCCCeEEEE
Q 010362 217 ECARFSP-----DGQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSR-DSEMLASGSQDGKIKVW 290 (512)
Q Consensus 217 ~~~~~s~-----~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~-~~~~l~s~~~dg~i~vw 290 (512)
+.+.|-| ...+||.|+.-|...+|...+.+....+- ..|...|+-+.=.- ...-+..++.|.++++.
T Consensus 71 ~g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~c-------d~snn~v~~~~r~cd~~~~~~i~sndht~k~~ 143 (344)
T KOG4532|consen 71 TGMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQC-------DVSNNDVTLVKRYCDLKFPLNIASNDHTGKTM 143 (344)
T ss_pred ecccccchHhhccccEEEeccccceeeeecccCcccceeee-------cccccchhhhhhhcccccceeeccCCcceeEE
Confidence 3455655 45689999999999999988665332111 01222222111111 12246667889999999
Q ss_pred EccCCeeeEEeccccccCeEEEEEecCCCEEEEEeCCCcEEEEeCCCC-ceeEE--eeCCccceeEEEEcCCCCEEEEEe
Q 010362 291 RIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSG-KLLKE--FRGHSSYVNDAIFTNDGSRVVTAS 367 (512)
Q Consensus 291 d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~i~d~~~~-~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~ 367 (512)
+++.+....... ...-.+.++++++|+++.++.+....|..|.+... +.+.. .......--+..|+.....++++.
T Consensus 144 ~~~~~s~~~~~h-~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~ 222 (344)
T KOG4532|consen 144 VVSGDSNKFAVH-NQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVF 222 (344)
T ss_pred EEecCcccceee-ccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEe
Confidence 987665433332 11134889999999999999999999999988643 22222 222334456778999889999999
Q ss_pred CCCcEEEEeCCCCceeeecCCCCCCCCCCceeEEEEEcCCCC-CeEEEEcCCCcEEEEecCCe-EEEEeeCCc-----cc
Q 010362 368 SDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNP-DHIVVCNKTSSIYIMTLQGQ-VVKSFSSGK-----RE 440 (512)
Q Consensus 368 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~l~~~~~~~~i~~~~~~~~-~~~~~~~~~-----~~ 440 (512)
.||++.|||++............ ...|.+.+....|++.+. ++++..-.-+.+.+.|++.. ....+.... ..
T Consensus 223 Qdg~~~I~DVR~~~tpm~~~sst-rp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~ 301 (344)
T KOG4532|consen 223 QDGTCAIYDVRNMATPMAEISST-RPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHN 301 (344)
T ss_pred cCCcEEEEEecccccchhhhccc-CCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCcccccccc
Confidence 99999999999765443333222 234889999999998764 45666667788999999843 222222111 11
Q ss_pred CCcEEEEEECCCCCEEEEEeCCCeEEEEEcC
Q 010362 441 GGDFVAACVSPKGEWIYCVGEDRNLYCFSHQ 471 (512)
Q Consensus 441 ~~~~~~~~~s~~g~~l~~g~~dg~i~iwd~~ 471 (512)
...+...+|+.++.-+.+.+++ .+.-|++.
T Consensus 302 tq~ifgt~f~~~n~s~~v~~e~-~~ae~ni~ 331 (344)
T KOG4532|consen 302 TQHIFGTNFNNENESNDVKNEL-QGAEYNIL 331 (344)
T ss_pred ccccccccccCCCcccccccch-hhheeecc
Confidence 2236667777777666665543 23444443
No 279
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.29 E-value=1.1e-10 Score=110.52 Aligned_cols=233 Identities=14% Similarity=0.207 Sum_probs=167.5
Q ss_pred cCcceeEEEEcCCCCeEEEEeCCCeEEEEEccCCee---------------eEEeccccccCeEEEEEecCCCEEEEEeC
Q 010362 262 HDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQC---------------LRRLERAHSEGVTSLVFSRDGSQILSTSF 326 (512)
Q Consensus 262 h~~~v~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~---------------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 326 (512)
......|++|+.+..++|.|+.||.+++..+.+... -+++. +|...|.-+.|+.+.+.|-+...
T Consensus 13 nnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLe-GH~~sV~vvTWNe~~QKLTtSDt 91 (1189)
T KOG2041|consen 13 NNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLE-GHNASVMVVTWNENNQKLTTSDT 91 (1189)
T ss_pred CCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhc-cCcceEEEEEeccccccccccCC
Confidence 445678999999999999999999999998865321 12333 89999999999999999999999
Q ss_pred CCcEEEEeCCCCceeEEee--CCccceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeecCCCCCCCCCCceeEEEEE
Q 010362 327 DSTARIHGLKSGKLLKEFR--GHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHL 404 (512)
Q Consensus 327 dg~v~i~d~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 404 (512)
+|.|.+|-+-.+.-...+. ...+.|.+++|+.+|..+.....||.|.+=.+...+.-.. .. .......+.|
T Consensus 92 ~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgK-eL------kg~~l~hv~w 164 (1189)
T KOG2041|consen 92 SGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGK-EL------KGQLLAHVLW 164 (1189)
T ss_pred CceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecch-hc------chheccceee
Confidence 9999999987776544332 2456799999999999999999999988776654432111 10 1123447788
Q ss_pred cCCCCCeEEEEcCCCcEEEEecCCeEEEEee---------CCcccCCcEEEEEE--------CCCCCEEEEEeCCCeEEE
Q 010362 405 FPKNPDHIVVCNKTSSIYIMTLQGQVVKSFS---------SGKREGGDFVAACV--------SPKGEWIYCVGEDRNLYC 467 (512)
Q Consensus 405 ~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~--------s~~g~~l~~g~~dg~i~i 467 (512)
+++. ..++.+-.+|.+.++|.++.....+. .....+..+..++| -||...++++-.+|.+.+
T Consensus 165 s~D~-~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~Qi 243 (1189)
T KOG2041|consen 165 SEDL-EQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQI 243 (1189)
T ss_pred cccH-HHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehh
Confidence 9887 67777888899999998864221111 11111223445555 257889999999999988
Q ss_pred EEcCCCeeEEeccccCCCeEEEEEcCCCCeEEEEECC
Q 010362 468 FSHQSGKLEHLMKVHEKDVIGVTHHPHRNLLATYGED 504 (512)
Q Consensus 468 wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~~~d 504 (512)
..-.+......+. ....+....|+|+|..||.+|.|
T Consensus 244 MR~eND~~Pvv~d-tgm~~vgakWnh~G~vLAvcG~~ 279 (1189)
T KOG2041|consen 244 MRSENDPEPVVVD-TGMKIVGAKWNHNGAVLAVCGND 279 (1189)
T ss_pred hhhcCCCCCeEEe-cccEeecceecCCCcEEEEccCc
Confidence 7654433222222 23568899999999999999865
No 280
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.29 E-value=3.7e-10 Score=107.97 Aligned_cols=293 Identities=12% Similarity=0.079 Sum_probs=179.7
Q ss_pred ccccCccccceEEEecCcCceEEEEECCC------------CCEEEEEeCCCeEEEEEcCCCeeeccccccccceeeccC
Q 010362 196 VEDMYPTTLSHTIKFGTKSHAECARFSPD------------GQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHD 263 (512)
Q Consensus 196 ~~~~~~~~~~~~~~~~h~~~v~~~~~s~~------------~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~ 263 (512)
+.|....+..+++. .|...|+.+.|.|- .-.||++...|.|.+||...+..+..++ .|.
T Consensus 39 VVDs~s~q~iqsie-~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~--------~~~ 109 (1062)
T KOG1912|consen 39 VVDSRSLQLIQSIE-LHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLS--------HSN 109 (1062)
T ss_pred EEehhhhhhhhccc-cCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhhc--------CCC
Confidence 44555566677776 88899999999872 1257888889999999998887665544 288
Q ss_pred cceeEEEEcC---CC-CeEEEEeCCCeEEEEEccCCeeeEEeccccccCeEEEEEec-CCCEEEEEeCCCcEEEEeC---
Q 010362 264 ETVLCIEFSR---DS-EMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSR-DGSQILSTSFDSTARIHGL--- 335 (512)
Q Consensus 264 ~~v~~l~~s~---~~-~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~v~i~d~--- 335 (512)
.++..++|-+ +. ..|+.-....++.+|+..+|+...+.. .......|+.+.| |.+.+..-+..|.+.+.+.
T Consensus 110 ~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~-ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~ 188 (1062)
T KOG1912|consen 110 DSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYD-YSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGL 188 (1062)
T ss_pred cchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccc-cCCcceeeeeeCCCCcceEEEEccCceEEEEeccCC
Confidence 8999999987 33 456666677899999999999887775 3344556677776 4455554444555544432
Q ss_pred -----------------------------------------------------------------------CCCceeEEe
Q 010362 336 -----------------------------------------------------------------------KSGKLLKEF 344 (512)
Q Consensus 336 -----------------------------------------------------------------------~~~~~~~~~ 344 (512)
+-..++...
T Consensus 189 sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vv 268 (1062)
T KOG1912|consen 189 SEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVV 268 (1062)
T ss_pred CCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEE
Confidence 111122222
Q ss_pred eCCccceeEEEEcCCC--CEEEEEeCCCcEEEEeCCCCceeeecC-----CCCCCC------CCCceeEEEEEcCCCCCe
Q 010362 345 RGHSSYVNDAIFTNDG--SRVVTASSDCTVKVWDLKSTDCLQTFK-----PPPPLR------GGDASVNSVHLFPKNPDH 411 (512)
Q Consensus 345 ~~~~~~v~~~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~-----~~~~~~------~~~~~i~~~~~~~~~~~~ 411 (512)
.-..+.+.-+.+-|++ ..|++...||.+.+|-.+......+.. .....+ -....+......|..+..
T Consensus 269 pier~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~~~~~f~~~~~~l~~dl~~Q~~~vr~m~~~rp~~~~~cPs~~sa 348 (1062)
T KOG1912|consen 269 PIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKEEPTEFKKPNASLSMDLGEQVHVVRPMEEFRPVIGASCPSTPSA 348 (1062)
T ss_pred EeccCCcceeEeccCCCcceEEEEecCCeEEEEEeeccCccccccchhhccccccceEEEeechhcccceeecCCCChhh
Confidence 2222223334555544 468889999999999765422111110 000000 011223334445665566
Q ss_pred EEEEcCCCcEEEEecCCeEEEEee-----------------------------CCcccCCcEEEEE-----------ECC
Q 010362 412 IVVCNKTSSIYIMTLQGQVVKSFS-----------------------------SGKREGGDFVAAC-----------VSP 451 (512)
Q Consensus 412 l~~~~~~~~i~~~~~~~~~~~~~~-----------------------------~~~~~~~~~~~~~-----------~s~ 451 (512)
+++--.+|...+|.+..+...... ....+....++.. -.|
T Consensus 349 ~avl~s~g~~~~w~l~~~ri~~~~~s~~iel~~pf~f~~~~~~v~k~~l~~LS~dg~h~sGs~~~~~~p~p~~t~~~~~p 428 (1062)
T KOG1912|consen 349 LAVLYSSGDSTFWQLSNGRIHLDYRSSSIELVLPFDFNLSTKLVGKTSLISLSDDGSHSSGSTCVRMRPMPELTKVENDP 428 (1062)
T ss_pred hhhhhhcchhHHHhhhcCCcCcccccccccccccccccCceeehhhccccchhhcCCCCCCceeeecccCcccceeecCC
Confidence 666666777777776522111000 0000111111111 122
Q ss_pred CC-------CEEEEEeCCCeEEEEEcCCCeeEEeccccCCCeEEEEEcCCCCeE
Q 010362 452 KG-------EWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPHRNLL 498 (512)
Q Consensus 452 ~g-------~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l 498 (512)
.| .+++.|...|+|.++|+.++..-+.+..|.+.|.++.|....+++
T Consensus 429 ~~n~~~~~~pLvAvGT~sGTV~vvdvst~~v~~~fsvht~~VkgleW~g~sslv 482 (1062)
T KOG1912|consen 429 GGNTPAGTVPLVAVGTNSGTVDVVDVSTNAVAASFSVHTSLVKGLEWLGNSSLV 482 (1062)
T ss_pred CCCccceeeeeEEeecCCceEEEEEecchhhhhhhcccccceeeeeeccceeEE
Confidence 22 267889999999999999999999999999999999998665443
No 281
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.26 E-value=2.8e-08 Score=89.03 Aligned_cols=218 Identities=16% Similarity=0.127 Sum_probs=147.0
Q ss_pred EEEEcC-CCCeEEEEeCCCeEEEEEccCCeeeEEeccccccCeEEEEEe-cCCCEEEEEeCCCcEEEEeCCCCceeEEee
Q 010362 268 CIEFSR-DSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFS-RDGSQILSTSFDSTARIHGLKSGKLLKEFR 345 (512)
Q Consensus 268 ~l~~s~-~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~ 345 (512)
+++|.+ ++.++++--..+.|..|+..++.... +. ... ...+++. ++ ..++.+... .+.++|..+++......
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~--~~~-~~G~~~~~~~-g~l~v~~~~-~~~~~d~~~g~~~~~~~ 77 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-ID--LPG-PNGMAFDRPD-GRLYVADSG-GIAVVDPDTGKVTVLAD 77 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EE--SSS-EEEEEEECTT-SEEEEEETT-CEEEEETTTTEEEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-Ee--cCC-CceEEEEccC-CEEEEEEcC-ceEEEecCCCcEEEEee
Confidence 577888 66666666678999999998876543 22 122 7777887 56 455666644 45666998885543333
Q ss_pred C-----CccceeEEEEcCCCCEEEEEeCC--------CcEEEEeCCCCceeeecCCCCCCCCCCceeEEEEEcCCCCCeE
Q 010362 346 G-----HSSYVNDAIFTNDGSRVVTASSD--------CTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHI 412 (512)
Q Consensus 346 ~-----~~~~v~~~~~~~~~~~l~~~~~d--------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l 412 (512)
. .....+++++.|+|+..++.... |.|..++.. ++...... .-...+.++|+|++..++
T Consensus 78 ~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~-------~~~~pNGi~~s~dg~~ly 149 (246)
T PF08450_consen 78 LPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD-------GLGFPNGIAFSPDGKTLY 149 (246)
T ss_dssp EETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE-------EESSEEEEEEETTSSEEE
T ss_pred ccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEec-------CcccccceEECCcchhee
Confidence 2 34568999999999977776543 557777776 44332222 123568999999986677
Q ss_pred EEEcCCCcEEEEecC--Ce-E--EEEeeCCcccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCeeEEeccccCCCeE
Q 010362 413 VVCNKTSSIYIMTLQ--GQ-V--VKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVI 487 (512)
Q Consensus 413 ~~~~~~~~i~~~~~~--~~-~--~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~ 487 (512)
++-+..+.|+.+++. +. . ...+.......+..-.+++..+|++.++....+.|.+++.. |+++..+......++
T Consensus 150 v~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t 228 (246)
T PF08450_consen 150 VADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPVPRPT 228 (246)
T ss_dssp EEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEE
T ss_pred ecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEE
Confidence 788899999999986 32 1 12222222222346789999999988888889999999987 998888877766899
Q ss_pred EEEEc-CCCCeEEE
Q 010362 488 GVTHH-PHRNLLAT 500 (512)
Q Consensus 488 ~v~~~-p~~~~l~s 500 (512)
+++|. |+.+.|..
T Consensus 229 ~~~fgg~~~~~L~v 242 (246)
T PF08450_consen 229 NCAFGGPDGKTLYV 242 (246)
T ss_dssp EEEEESTTSSEEEE
T ss_pred EEEEECCCCCEEEE
Confidence 99994 56554443
No 282
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=99.25 E-value=3.8e-08 Score=84.07 Aligned_cols=240 Identities=17% Similarity=0.233 Sum_probs=144.5
Q ss_pred EEEECCCCCEEEEEeCCCeEEEEEcCCCe--eeccccccccceeeccCcceeEEEEcCCCCeEEEEeCCCeEEEEEccCC
Q 010362 218 CARFSPDGQFLVSCSFDGFIEVWDYLSGK--LKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSG 295 (512)
Q Consensus 218 ~~~~s~~~~~l~sg~~dg~i~iwd~~~~~--~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~vwd~~~~ 295 (512)
.++.+++|+.||+-- |..|.|=..++.- .+.... ..+.....=+.++||||+.+||.+...|+|+++|+..
T Consensus 2 ~~~~~~~Gk~lAi~q-d~~iEiRsa~Ddf~si~~kcq-----VpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g- 74 (282)
T PF15492_consen 2 HLALSSDGKLLAILQ-DQCIEIRSAKDDFSSIIGKCQ-----VPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMG- 74 (282)
T ss_pred ceeecCCCcEEEEEe-ccEEEEEeccCCchheeEEEe-----cCCCCCchheEEEECCCCcEEEEEcCCCeEEEEeccc-
Confidence 467788999888765 7778776544321 111111 1112334457899999999999999999999999875
Q ss_pred eeeEEeccc------cccCeEEEEEecC------CCEEEEEeCCCcEEEEeCCCC-----ceeEEee--C-CccceeEEE
Q 010362 296 QCLRRLERA------HSEGVTSLVFSRD------GSQILSTSFDSTARIHGLKSG-----KLLKEFR--G-HSSYVNDAI 355 (512)
Q Consensus 296 ~~~~~~~~~------~~~~i~~~~~~~~------~~~l~~~~~dg~v~i~d~~~~-----~~~~~~~--~-~~~~v~~~~ 355 (512)
..+..+... ....|..+.|.+. ...|++-..+|.++-|-+..+ +...++. . +...|+++.
T Consensus 75 ~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~v 154 (282)
T PF15492_consen 75 SELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAV 154 (282)
T ss_pred ceeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEE
Confidence 333444322 2356777777652 225667777888887765322 2223332 2 466899999
Q ss_pred EcCCCCEEEEEeCCCcEEEEeCCCCceeeecCCCCCCCCCCceeEEEEEcCCCCCeEEEEcCCCcE-------EEEecCC
Q 010362 356 FTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSI-------YIMTLQG 428 (512)
Q Consensus 356 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i-------~~~~~~~ 428 (512)
++|..+.|++|+.... ..+. ..+....+++-.+..+.+.+..+...+..+ .++.+-
T Consensus 155 y~p~h~LLlVgG~~~~------~~~~----------s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~- 217 (282)
T PF15492_consen 155 YHPKHRLLLVGGCEQN------QDGM----------SKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIP- 217 (282)
T ss_pred EcCCCCEEEEeccCCC------CCcc----------ccccccCceEEEEcCCCCcEEEccccCccccccccccceeecc-
Confidence 9999888887765321 0000 001122333434333333333332222222 122211
Q ss_pred eEEEEeeCCcccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCeeEEecccc
Q 010362 429 QVVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVH 482 (512)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~h 482 (512)
..+.+.........|..+..||||..|++...+|.|.+|++.+-++......+
T Consensus 218 -~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~~~ 270 (282)
T PF15492_consen 218 -SFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWKQD 270 (282)
T ss_pred -ceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcccchh
Confidence 11111222223566899999999999999999999999999988777666543
No 283
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.25 E-value=3.2e-08 Score=89.74 Aligned_cols=153 Identities=15% Similarity=0.235 Sum_probs=124.1
Q ss_pred ECC-CCCEEEEEeCCCeEEEEEcCCCeeeccccccccceeeccCcceeEEEEcCCCCeEEEEeCCC-eEEEEEccCCeee
Q 010362 221 FSP-DGQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQDG-KIKVWRIRSGQCL 298 (512)
Q Consensus 221 ~s~-~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg-~i~vwd~~~~~~~ 298 (512)
|++ +|++++..| -|...|.+...+-.++ .+|...|.-..+..+++-++.|..|| .+-|+|..+++..
T Consensus 327 fa~~~Gd~ia~VS-RGkaFi~~~~~~~~iq----------v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~k 395 (668)
T COG4946 327 FAVVNGDYIALVS-RGKAFIMRPWDGYSIQ----------VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVK 395 (668)
T ss_pred hccCCCcEEEEEe-cCcEEEECCCCCeeEE----------cCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEE
Confidence 444 788888888 6788888765554332 23778899999999888999999999 8999999888754
Q ss_pred EEeccccccCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeeCCccceeEEEEcCCCCEEEEEeCCC----cEEE
Q 010362 299 RRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDC----TVKV 374 (512)
Q Consensus 299 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg----~i~i 374 (512)
.+. ..-+.|.++..+|+|++++++.....+.+.|+.++.....-+...+-|+.+.|+|++++++-+--+| .|++
T Consensus 396 -r~e-~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Ikl 473 (668)
T COG4946 396 -RIE-KDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKL 473 (668)
T ss_pred -Eee-CCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEE
Confidence 444 4668899999999999999999889999999999987665566677899999999999999887665 5899
Q ss_pred EeCCCCceeeec
Q 010362 375 WDLKSTDCLQTF 386 (512)
Q Consensus 375 wd~~~~~~~~~~ 386 (512)
+|+.+++.....
T Consensus 474 ydm~~~Kiy~vT 485 (668)
T COG4946 474 YDMDGGKIYDVT 485 (668)
T ss_pred EecCCCeEEEec
Confidence 999988765543
No 284
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.24 E-value=2.2e-10 Score=97.93 Aligned_cols=285 Identities=14% Similarity=0.198 Sum_probs=173.9
Q ss_pred cCcCceEEEEECCCCCEEEEEeCCCeEEEEEcCCCeeeccccccccceeecc------------CcceeEEEEcCCCC--
Q 010362 211 GTKSHAECARFSPDGQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMH------------DETVLCIEFSRDSE-- 276 (512)
Q Consensus 211 ~h~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h------------~~~v~~l~~s~~~~-- 276 (512)
.....|+++.|...|.||++|...|.|.+|.-+... .... .....+.+| ...|..+.|..++.
T Consensus 24 tead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~-~cey--kf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~ 100 (460)
T COG5170 24 TEADKITAVEFDETGLYLATGDKGGRVVLFEREKSY-GCEY--KFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRN 100 (460)
T ss_pred cccceeeEEEeccccceEeecCCCceEEEeeccccc-ccch--hhhhhhcccccchhhhhhccHHHHhhheeeecCCCcc
Confidence 345669999999999999999999999999754332 1111 111122233 24588899987643
Q ss_pred eEEEEeCCCeEEEEEccCCeeeEEec--------cccccCeEEEEEecCCCEEEEEeC-CCcEEEEeCCCCceeEEe-eC
Q 010362 277 MLASGSQDGKIKVWRIRSGQCLRRLE--------RAHSEGVTSLVFSRDGSQILSTSF-DSTARIHGLKSGKLLKEF-RG 346 (512)
Q Consensus 277 ~l~s~~~dg~i~vwd~~~~~~~~~~~--------~~~~~~i~~~~~~~~~~~l~~~~~-dg~v~i~d~~~~~~~~~~-~~ 346 (512)
.++..+.|.+|++|.+........-. .+..+++++.. .-.+--.+. |..|.. .+.+.+ ..
T Consensus 101 hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~----~l~lprls~hd~iiaa------~p~rvyaNa 170 (460)
T COG5170 101 HFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTK----ELLLPRLSEHDEIIAA------KPCRVYANA 170 (460)
T ss_pred eEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHH----HhhcccccccceEEEe------ccceecccc
Confidence 46666789999999987543211111 11112221110 000000000 111111 111112 46
Q ss_pred CccceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeecCC--CCCCCCCCceeEEEEEcCCCCCeEEEEcCCCcEEEE
Q 010362 347 HSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKP--PPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIM 424 (512)
Q Consensus 347 ~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~~ 424 (512)
|.-.++++.++.|...++++. |-.|.+|++.-......+.. |........-|++..|+|.....+...+..|.|++-
T Consensus 171 H~yhiNSiS~NsD~et~lSaD-dLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~ 249 (460)
T COG5170 171 HPYHINSISFNSDKETLLSAD-DLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLN 249 (460)
T ss_pred ceeEeeeeeecCchheeeecc-ceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEeh
Confidence 888899999999988877765 66899999875432222211 111122234578889999988999999999999999
Q ss_pred ecCCe-----EEEEeeCC---------cccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCC-eeEEeccccCC-----
Q 010362 425 TLQGQ-----VVKSFSSG---------KREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSG-KLEHLMKVHEK----- 484 (512)
Q Consensus 425 ~~~~~-----~~~~~~~~---------~~~~~~~~~~~~s~~g~~l~~g~~dg~i~iwd~~~~-~~~~~~~~h~~----- 484 (512)
|++.. ..+.+... ..-...|..+.|+++|++|++-+. -+|.+||.+.. .++.++.-|..
T Consensus 250 DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~h~~l~~~l 328 (460)
T COG5170 250 DLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPMHCDLMDEL 328 (460)
T ss_pred hhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeechHHHHHHHH
Confidence 99832 11111110 011245788999999999988764 58999999864 46666654422
Q ss_pred -------Ce---EEEEEcCCCCeEEEEECCCeEEEe
Q 010362 485 -------DV---IGVTHHPHRNLLATYGEDCTMKLW 510 (512)
Q Consensus 485 -------~v---~~v~~~p~~~~l~s~~~dg~i~iW 510 (512)
.| ..+.|+.|...+.+|+.....-|+
T Consensus 329 ~d~YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiy 364 (460)
T COG5170 329 NDVYENDAIFDKFEISFSGDDKHVLSGSYSNNFGIY 364 (460)
T ss_pred HhhhhccceeeeEEEEecCCcccccccccccceeee
Confidence 22 257788888888888876655544
No 285
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.24 E-value=2e-08 Score=96.09 Aligned_cols=192 Identities=13% Similarity=0.103 Sum_probs=126.1
Q ss_pred ceeEEEEcCCCCe-EEEEeCC---CeEEEEEccCCeeeEEeccccccCeEEEEEecCCCEEEEEe-C--CCcEEEEeCCC
Q 010362 265 TVLCIEFSRDSEM-LASGSQD---GKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTS-F--DSTARIHGLKS 337 (512)
Q Consensus 265 ~v~~l~~s~~~~~-l~s~~~d---g~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~--dg~v~i~d~~~ 337 (512)
.+....|+|||+. ++..+.+ ..|.++|+.+++...... ..+......|+|||+.++... . +..|+++|+.+
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~--~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~ 266 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS--SQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNT 266 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec--CCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCC
Confidence 6778999999985 6654443 569999998887544432 455566788999998876543 2 34688889877
Q ss_pred CceeEEeeCCccceeEEEEcCCCCEEEEEeC-CC--cEEEEeCCCCceeeecCCCCCCCCCCceeEEEEEcCCCCCeEEE
Q 010362 338 GKLLKEFRGHSSYVNDAIFTNDGSRVVTASS-DC--TVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVV 414 (512)
Q Consensus 338 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~ 414 (512)
++. ..+..+........|+|||+.|+..+. .| .|.+.|+.+++..+.... +. ....|+|++..++++
T Consensus 267 g~~-~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~-----g~----~~~~~SPDG~~Ia~~ 336 (419)
T PRK04043 267 KTL-TQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH-----GK----NNSSVSTYKNYIVYS 336 (419)
T ss_pred CcE-EEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccC-----CC----cCceECCCCCEEEEE
Confidence 764 344444433445689999998776653 33 577788887765332211 11 123899999666665
Q ss_pred EcCC--------CcEEEEecCCeEEEEeeCCcccCCcEEEEEECCCCCEEEEEeCCC---eEEEEEcCC
Q 010362 415 CNKT--------SSIYIMTLQGQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDR---NLYCFSHQS 472 (512)
Q Consensus 415 ~~~~--------~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~dg---~i~iwd~~~ 472 (512)
.... ..|++.|+.+.....+.... ......|+|||+.|+..+.++ .+.+.++..
T Consensus 337 ~~~~~~~~~~~~~~I~v~d~~~g~~~~LT~~~----~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g 401 (419)
T PRK04043 337 SRETNNEFGKNTFNLYLISTNSDYIRRLTANG----VNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNY 401 (419)
T ss_pred EcCCCcccCCCCcEEEEEECCCCCeEECCCCC----CcCCeEECCCCCEEEEEEccCCcEEEEEEecCC
Confidence 5543 36888888866666555432 123578999999887766432 366777654
No 286
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.23 E-value=6.9e-10 Score=106.13 Aligned_cols=267 Identities=15% Similarity=0.148 Sum_probs=182.2
Q ss_pred CceEEEEECCCCCEEEEEeCCCeEEEEEcCCCeeeccccccccceeeccCcceeEEEEcCC------------CCeEEEE
Q 010362 214 SHAECARFSPDGQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRD------------SEMLASG 281 (512)
Q Consensus 214 ~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~------------~~~l~s~ 281 (512)
+.-.++.|+|.| +||.|+ ...|.+-|..+-+.+..+.. |...|+.+.|.|- .-+||++
T Consensus 16 sN~~A~Dw~~~G-LiAygs-hslV~VVDs~s~q~iqsie~--------h~s~V~~VrWap~~~p~~llS~~~~~lliAsa 85 (1062)
T KOG1912|consen 16 SNRNAADWSPSG-LIAYGS-HSLVSVVDSRSLQLIQSIEL--------HQSAVTSVRWAPAPSPRDLLSPSSSQLLIASA 85 (1062)
T ss_pred ccccccccCccc-eEEEec-CceEEEEehhhhhhhhcccc--------CccceeEEEeccCCCchhccCccccceeEEec
Confidence 335678899988 677777 45788889877766665543 8899999999882 1257788
Q ss_pred eCCCeEEEEEccCCeeeEEeccccccCeEEEEEec---CC-CEEEEEeCCCcEEEEeCCCCceeEEeeCCccceeEEEEc
Q 010362 282 SQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSR---DG-SQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFT 357 (512)
Q Consensus 282 ~~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~---~~-~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~ 357 (512)
...|.|.+||...+..+..+. .+..++..++|-+ +. ..|++-....++.+|+..+|+....+........|+.+.
T Consensus 86 D~~GrIil~d~~~~s~~~~l~-~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~D 164 (1062)
T KOG1912|consen 86 DISGRIILVDFVLASVINWLS-HSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVD 164 (1062)
T ss_pred cccCcEEEEEehhhhhhhhhc-CCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeC
Confidence 888999999999998888887 7889999999987 23 455666667899999999999998887766677889999
Q ss_pred C-CCCEEEEEeCCCcEEEEeCCCCceeeecCCCCCCCCCCceeEEEEEcCCCCCe-EEEEcCCCcEEEEecCCeEEEEee
Q 010362 358 N-DGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDH-IVVCNKTSSIYIMTLQGQVVKSFS 435 (512)
Q Consensus 358 ~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-l~~~~~~~~i~~~~~~~~~~~~~~ 435 (512)
| |.+.+..-+..|.+.+-+.-... +....++...|.+-.-.+..... .+++. .... ..
T Consensus 165 Pfd~rh~~~l~s~g~vl~~~~l~~s-------ep~~pgk~~qI~sd~Sdl~~lere~at~n---------s~ts----~~ 224 (1062)
T KOG1912|consen 165 PFDSRHFCVLGSKGFVLSCKDLGLS-------EPDVPGKEFQITSDHSDLAHLERETATGN---------STTS----TP 224 (1062)
T ss_pred CCCcceEEEEccCceEEEEeccCCC-------CCCCCceeEEEecCccchhhhhhhhhccc---------cccC----CC
Confidence 8 66677777777877776543211 01111222222221111111000 11110 0000 00
Q ss_pred CCcccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCeeEEeccccCCCeEEEEEcCCC--CeEEEEECCCeEEEec
Q 010362 436 SGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPHR--NLLATYGEDCTMKLWK 511 (512)
Q Consensus 436 ~~~~~~~~~~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~p~~--~~l~s~~~dg~i~iW~ 511 (512)
............+|+|.-+.++.......+.++|++-..++....-..+.+.-+.|-|++ ..|...-.||.+.||.
T Consensus 225 ~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirv 302 (1062)
T KOG1912|consen 225 ASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRV 302 (1062)
T ss_pred cchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEE
Confidence 000000112346789988888888888999999999888888887777777788888865 4788899999999984
No 287
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=99.23 E-value=3.8e-10 Score=94.07 Aligned_cols=210 Identities=19% Similarity=0.228 Sum_probs=128.0
Q ss_pred eEEEEECCCCCEEEEEeCCCeEEEEEcCCCeeecc----ccccccceeeccCcceeEEEEcCCCCeEEEEeCCCeEEEEE
Q 010362 216 AECARFSPDGQFLVSCSFDGFIEVWDYLSGKLKKD----LQYQADETFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWR 291 (512)
Q Consensus 216 v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~----~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~vwd 291 (512)
++.+.|+-+ ..|+++..++.+......++.+... ....+.+.+..|.++-.+-+.+-.++.++++..||.+.+++
T Consensus 39 ~~~~~~v~~-~~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s 117 (319)
T KOG4714|consen 39 LSKVSLSAE-YILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFS 117 (319)
T ss_pred EEEeechhh-heeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccccCCceEecCCCceEEEEe
Confidence 555566543 3567777777776666544443322 12222333334544444444444567899999999999999
Q ss_pred ccCCeee-EEeccccccCeEEEEEecCCCEEEEEeC-----CCcEEEEeCCCCceeEEeeCCccceeEEEEcCC-CCEEE
Q 010362 292 IRSGQCL-RRLERAHSEGVTSLVFSRDGSQILSTSF-----DSTARIHGLKSGKLLKEFRGHSSYVNDAIFTND-GSRVV 364 (512)
Q Consensus 292 ~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~l~~~~~-----dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~ 364 (512)
.+.-..+ .++...|.+. -+.+....++.+.++.. -+..+.|+++..+....-......|++++-+|. .+.++
T Consensus 118 ~~~~~~~~~~i~~~~~~~-as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~ 196 (319)
T KOG4714|consen 118 TDKDLALMSRIPSIHSGS-ASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVC 196 (319)
T ss_pred chHHHhhhhhcccccccc-cccceeecccEEecCCcceEeeccceeeecccccccccccccccccchhhhCCcccccEEE
Confidence 7652111 1121112221 12222233444444321 234566666543332222222334888998884 45677
Q ss_pred EEeCCCcEEEEeCCCCceeeecCCCCCCCCCCceeEEEEEcCCCCCeEEEEcCCCcEEEEecCCeEEE
Q 010362 365 TASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQVVK 432 (512)
Q Consensus 365 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~ 432 (512)
+|+.||.+.+||.+.... +...+..|+.++..+.|+|.++..+++++.||.+..||..+..+.
T Consensus 197 cgt~dg~~~l~d~rn~~~-----p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~~~l~ 259 (319)
T KOG4714|consen 197 CGTDDGIVGLWDARNVAM-----PVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDASTTFLS 259 (319)
T ss_pred EecCCCeEEEEEcccccc-----hHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCCceEE
Confidence 888999999999998632 222345788999999999999999999999999999999865443
No 288
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.22 E-value=3.7e-09 Score=97.70 Aligned_cols=249 Identities=13% Similarity=0.226 Sum_probs=159.9
Q ss_pred EEEEECCCCCEEEEEeCCCeEEEEEcCCCeeeccccccccceeeccCcceeEEEEcCCC--CeEEE-----EeCCCeEEE
Q 010362 217 ECARFSPDGQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDS--EMLAS-----GSQDGKIKV 289 (512)
Q Consensus 217 ~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~--~~l~s-----~~~dg~i~v 289 (512)
++..|++|..+.|--. .+.+.+|+....+... -.-|...|+.+.+||.+ ..+|+ .+.-+.|+|
T Consensus 129 W~~qfs~dEsl~arlv-~nev~f~~~~~f~~~~---------~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri 198 (566)
T KOG2315|consen 129 WVPQFSIDESLAARLV-SNEVQFYDLGSFKTIQ---------HKLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRI 198 (566)
T ss_pred cccccccchhhhhhhh-cceEEEEecCCcccee---------eeeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEE
Confidence 7999999887554332 5689999987633221 11277889999999963 33443 344568999
Q ss_pred EEccCCeeeEEe--ccccccCeEEEEEecCCCEE-EEEeC--C---------CcEEEEeCCCCceeEEeeCCccceeEEE
Q 010362 290 WRIRSGQCLRRL--ERAHSEGVTSLVFSRDGSQI-LSTSF--D---------STARIHGLKSGKLLKEFRGHSSYVNDAI 355 (512)
Q Consensus 290 wd~~~~~~~~~~--~~~~~~~i~~~~~~~~~~~l-~~~~~--d---------g~v~i~d~~~~~~~~~~~~~~~~v~~~~ 355 (512)
|.......-..+ ..-....=..+.|++-|.-| +.++. | .+++++++........+. ..++|.++.
T Consensus 199 ~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~-k~GPVhdv~ 277 (566)
T KOG2315|consen 199 YKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLL-KEGPVHDVT 277 (566)
T ss_pred eccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecC-CCCCceEEE
Confidence 987632211111 01123334567788766533 32222 2 367888876333333333 478999999
Q ss_pred EcCCCCEEEE--EeCCCcEEEEeCCCCceeeecCCCCCCCCCCceeEEEEEcCCCCCeEEEEc---CCCcEEEEecCCeE
Q 010362 356 FTNDGSRVVT--ASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCN---KTSSIYIMTLQGQV 430 (512)
Q Consensus 356 ~~~~~~~l~~--~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~---~~~~i~~~~~~~~~ 430 (512)
|+|+++.+++ |-.-.++.|||++ +..+..+. .++-+.+.|+|.+ .+++.++ -.|.+-+||.....
T Consensus 278 W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df~--------egpRN~~~fnp~g-~ii~lAGFGNL~G~mEvwDv~n~K 347 (566)
T KOG2315|consen 278 WSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDFP--------EGPRNTAFFNPHG-NIILLAGFGNLPGDMEVWDVPNRK 347 (566)
T ss_pred ECCCCCEEEEEEecccceEEEEcCC-CCEeEeCC--------CCCccceEECCCC-CEEEEeecCCCCCceEEEeccchh
Confidence 9999987655 4456789999987 44555543 4567889999998 5555544 34889999998632
Q ss_pred -EEEeeCCcccCCcEEEEEECCCCCEEEEEeC------CCeEEEEEcCCCeeEEeccccCCCeEEEEEcC
Q 010362 431 -VKSFSSGKREGGDFVAACVSPKGEWIYCVGE------DRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHP 493 (512)
Q Consensus 431 -~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~------dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~p 493 (512)
+..+. ....+-+.|+|||+++++++. |+.++||+. +|.++......+ ....+.|-|
T Consensus 348 ~i~~~~-----a~~tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhy-tG~~l~~~~f~s-EL~qv~W~P 410 (566)
T KOG2315|consen 348 LIAKFK-----AANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHY-TGSLLHEKMFKS-ELLQVEWRP 410 (566)
T ss_pred hccccc-----cCCceEEEEcCCCcEEEEEeccccEEecCCeEEEEe-cCceeehhhhhH-hHhheeeee
Confidence 22222 223567899999999999874 788999996 455554432222 567778876
No 289
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.20 E-value=1e-10 Score=121.25 Aligned_cols=214 Identities=14% Similarity=0.227 Sum_probs=159.7
Q ss_pred CCeEEEEeCCCeEEEEEccCCeeeEEeccccccCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeeC-CccceeE
Q 010362 275 SEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRG-HSSYVND 353 (512)
Q Consensus 275 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~-~~~~v~~ 353 (512)
++.+..+..++...-|..+.+... ...+-..|.++.-+|...+.++|+.||.|++|....++.+..++. .+..|+.
T Consensus 2180 s~~~~~~n~~~~~~tq~~~~~~~~---~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr 2256 (2439)
T KOG1064|consen 2180 SNRFTPSNLPWLGSTQTSRGASVM---IKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTR 2256 (2439)
T ss_pred cccCCcccCCccccceecccceeE---eecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhh
Confidence 344444555566666654433322 123456788899999999999999999999999988888877753 3478999
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEeCCCCceeeecCCCCCCCCCCceeEEEEEcCCCCCeEEEE---cCCCcEEEEecCCeE
Q 010362 354 AIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVC---NKTSSIYIMTLQGQV 430 (512)
Q Consensus 354 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~---~~~~~i~~~~~~~~~ 430 (512)
+.|+.+|+.+..+..||.+.+|... .++... .++|......+.|.. ..++++ +.++.+.+||..-..
T Consensus 2257 ~~f~~qGnk~~i~d~dg~l~l~q~~-pk~~~s------~qchnk~~~Df~Fi~---s~~~tag~s~d~~n~~lwDtl~~~ 2326 (2439)
T KOG1064|consen 2257 SRFNHQGNKFGIVDGDGDLSLWQAS-PKPYTS------WQCHNKALSDFRFIG---SLLATAGRSSDNRNVCLWDTLLPP 2326 (2439)
T ss_pred hhhcccCCceeeeccCCceeecccC-Ccceec------cccCCccccceeeee---hhhhccccCCCCCcccchhcccCc
Confidence 9999999999999999999999876 222222 235666666666665 334443 356789999986332
Q ss_pred EEEeeCCcccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCeeEEeccccCCCeEEEEEcCCCCeEEEEECCCeEEEe
Q 010362 431 VKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPHRNLLATYGEDCTMKLW 510 (512)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~~~dg~i~iW 510 (512)
...+.. ..|.+..+++++.|..+.+++||.+|.|++||++..++++.++. ++ ...++++|+..|.|+||
T Consensus 2327 ~~s~v~-~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~---------~~-~~~~f~~~ss~g~ikIw 2395 (2439)
T KOG1064|consen 2327 MNSLVH-TCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA---------LD-TREYFVTGSSEGNIKIW 2395 (2439)
T ss_pred ccceee-eecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh---------hh-hhheeeccCcccceEEE
Confidence 222222 34567789999999999999999999999999999988877764 55 67799999999999999
Q ss_pred cC
Q 010362 511 KP 512 (512)
Q Consensus 511 ~~ 512 (512)
+.
T Consensus 2396 ~~ 2397 (2439)
T KOG1064|consen 2396 RL 2397 (2439)
T ss_pred Ec
Confidence 74
No 290
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.20 E-value=4.5e-11 Score=109.74 Aligned_cols=204 Identities=16% Similarity=0.248 Sum_probs=142.8
Q ss_pred eEEeccccccCeEEEEEecCCCEEEEEeCCCcEEEEeCCC-------CceeEEeeCCccceeEEEEcCCCCEEEEEeCCC
Q 010362 298 LRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKS-------GKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDC 370 (512)
Q Consensus 298 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~i~d~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 370 (512)
+..+. +|...|..++--.+.+.+++++.|++|++|.++. ..+..+++.|+.+|.++.|-.+.++++++ ||
T Consensus 728 L~nf~-GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~ 804 (1034)
T KOG4190|consen 728 LCNFT-GHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DG 804 (1034)
T ss_pred eeccc-CcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cC
Confidence 34454 8888898888777888999999999999999863 24677888999999999999887777654 78
Q ss_pred cEEEEeCCCCceeeecCCCCCCCCCCceeEEEEEcCC--CCCeEEEEcCCCcEEEEecCC-eEEEEe--eCCcccCCcEE
Q 010362 371 TVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPK--NPDHIVVCNKTSSIYIMTLQG-QVVKSF--SSGKREGGDFV 445 (512)
Q Consensus 371 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~l~~~~~~~~i~~~~~~~-~~~~~~--~~~~~~~~~~~ 445 (512)
.|.+||.--++........+ ..+.+..+...+. ..-+++.|+...+++++|.+. .-...+ ......+..+.
T Consensus 805 giHlWDPFigr~Laq~~dap----k~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R 880 (1034)
T KOG4190|consen 805 GIHLWDPFIGRLLAQMEDAP----KEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTR 880 (1034)
T ss_pred cceeecccccchhHhhhcCc----ccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchhee
Confidence 89999988777655433222 1223333333333 223455568899999999983 322222 22233456688
Q ss_pred EEEECCCCCEEEEEeCCCeEEEEEcCCCeeEEeccccCCCeEEEEEcCCCCeEEEEECCCeEEE
Q 010362 446 AACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPHRNLLATYGEDCTMKL 509 (512)
Q Consensus 446 ~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~~~dg~i~i 509 (512)
++++.+.|++++++-.+|.|.+.|.++|+.+..+....-....++ .|..+.++....|.++.+
T Consensus 881 ~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqla-apsdq~L~~saldHslaV 943 (1034)
T KOG4190|consen 881 AIAVADKGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLA-APSDQALAQSALDHSLAV 943 (1034)
T ss_pred EEEeccCcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhc-CchhHHHHhhcccceeEe
Confidence 999999999999999999999999999998876654433333333 233445555555555555
No 291
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.18 E-value=6.5e-09 Score=95.90 Aligned_cols=248 Identities=17% Similarity=0.194 Sum_probs=150.0
Q ss_pred ecCcCceEEEEECCCCCEEEEEeC-----------CCeEEEEEcCCCeeeccccccccceeeccCcceeEEEEcCCCCeE
Q 010362 210 FGTKSHAECARFSPDGQFLVSCSF-----------DGFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEML 278 (512)
Q Consensus 210 ~~h~~~v~~~~~s~~~~~l~sg~~-----------dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l 278 (512)
+.|.+ |.-+.|||+.+||+|-+. ...++|||+.+|...+.+... .+....-.-..||.|++++
T Consensus 247 F~Hp~-Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~-----~~~~~~WP~frWS~DdKy~ 320 (698)
T KOG2314|consen 247 FYHPG-VQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVI-----KSPYLKWPIFRWSHDDKYF 320 (698)
T ss_pred ccCCC-ceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceecc-----CCCccccceEEeccCCcee
Confidence 45554 888999999999998763 147999999999988876542 1122222356899999999
Q ss_pred EEEeCCCeEEEEEccCCeeeEEeccccccCeEEEEEecCCCEEEEEeCC-----CcEEEEeCC-----------------
Q 010362 279 ASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFD-----STARIHGLK----------------- 336 (512)
Q Consensus 279 ~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----g~v~i~d~~----------------- 336 (512)
|--.. .+|.||+..+-..+-.- .-.-..|....|+|.++.||.=+.. ..+.+..+.
T Consensus 321 Arm~~-~sisIyEtpsf~lld~K-slki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDck 398 (698)
T KOG2314|consen 321 ARMTG-NSISIYETPSFMLLDKK-SLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCK 398 (698)
T ss_pred EEecc-ceEEEEecCceeeeccc-ccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccE
Confidence 98776 47999987664332221 1334567778888877766643211 011111111
Q ss_pred -----CCceeE---------------------Eee---------CCccceeEEEEcCCCCEEEEEeC---CCcEEEEeCC
Q 010362 337 -----SGKLLK---------------------EFR---------GHSSYVNDAIFTNDGSRVVTASS---DCTVKVWDLK 378 (512)
Q Consensus 337 -----~~~~~~---------------------~~~---------~~~~~v~~~~~~~~~~~l~~~~~---dg~i~iwd~~ 378 (512)
+|..+. .++ .-...|...+|-|.|+.+++-+. ..++.+|.+.
T Consensus 399 LhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e 478 (698)
T KOG2314|consen 399 LHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVE 478 (698)
T ss_pred EEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeecchheeeeeeccCCCeEEEEEccccccceeEEEee
Confidence 111110 000 12344677889999998876543 3568888877
Q ss_pred CCceeeecCCCCCCCCCCceeEEEEEcCCCCCeEEEE--cCCCcEEEEecCCeEEEEeeCCcccCCcEEEEEECCCCCEE
Q 010362 379 STDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVC--NKTSSIYIMTLQGQVVKSFSSGKREGGDFVAACVSPKGEWI 456 (512)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l 456 (512)
+.. ........ -.....+.+.|+|.|.-+++.+ +..|.+.++|.+.......... .....+.+.|.|.|+|+
T Consensus 479 ~~~--~~~~lVk~--~dk~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~--eh~~at~veWDPtGRYv 552 (698)
T KOG2314|consen 479 TNI--KKPSLVKE--LDKKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASP--EHFAATEVEWDPTGRYV 552 (698)
T ss_pred cCC--Cchhhhhh--hcccccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccCc--cccccccceECCCCCEE
Confidence 421 11111111 1234678899999994443333 4578899999884322222221 12335678999999999
Q ss_pred EEEeCCC------eEEEEEcC
Q 010362 457 YCVGEDR------NLYCFSHQ 471 (512)
Q Consensus 457 ~~g~~dg------~i~iwd~~ 471 (512)
++++.-+ --++|+..
T Consensus 553 vT~ss~wrhk~d~GYri~tfq 573 (698)
T KOG2314|consen 553 VTSSSSWRHKVDNGYRIFTFQ 573 (698)
T ss_pred EEeeehhhhccccceEEEEee
Confidence 9998533 34555544
No 292
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=99.18 E-value=3.7e-08 Score=94.81 Aligned_cols=259 Identities=13% Similarity=0.101 Sum_probs=161.3
Q ss_pred CCCEEEEEeCCCeEEEEEcCCCeeeccccccccceeeccCcceeE-EEEcCCCCeEEEEeCCCeEEEEEccCCeeeEEec
Q 010362 224 DGQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHDETVLC-IEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLE 302 (512)
Q Consensus 224 ~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~-l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~ 302 (512)
++..++.++.+|.+.-+|.++|+........ ..+.+ ... .+..++.++.+|.+..+|..+|+.+.+..
T Consensus 119 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~---------~~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~ 187 (394)
T PRK11138 119 AGGKVYIGSEKGQVYALNAEDGEVAWQTKVA---------GEALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWTVN 187 (394)
T ss_pred ECCEEEEEcCCCEEEEEECCCCCCcccccCC---------CceecCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeec
Confidence 3556777888999999999999987755431 11111 111 24466777889999999999999888775
Q ss_pred ccccc----CeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeeCCcc-------ceeEEEEcC--CCCEEEEEeCC
Q 010362 303 RAHSE----GVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRGHSS-------YVNDAIFTN--DGSRVVTASSD 369 (512)
Q Consensus 303 ~~~~~----~i~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~-------~v~~~~~~~--~~~~l~~~~~d 369 (512)
..... ...+-.. .+..++.++.+|.+..+|..+|+.+........ ....+..+| .+..++.++.+
T Consensus 188 ~~~~~~~~~~~~sP~v--~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~ 265 (394)
T PRK11138 188 LDVPSLTLRGESAPAT--AFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYN 265 (394)
T ss_pred CCCCcccccCCCCCEE--ECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcC
Confidence 32110 0011111 234577788899999999999987765532110 011111222 24567778889
Q ss_pred CcEEEEeCCCCceeeecCCCCCCCCCCceeEEEEEcCCCCCeEEEEcCCCcEEEEecCCe-EEEEeeCCcccCCcEEEEE
Q 010362 370 CTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQ-VVKSFSSGKREGGDFVAAC 448 (512)
Q Consensus 370 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 448 (512)
|.+..+|..+++......... ...+.. ....+++++.++.++.+|.... ..-...... ........
T Consensus 266 g~l~ald~~tG~~~W~~~~~~--------~~~~~~---~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~--~~~~~sp~ 332 (394)
T PRK11138 266 GNLVALDLRSGQIVWKREYGS--------VNDFAV---DGGRIYLVDQNDRVYALDTRGGVELWSQSDLL--HRLLTAPV 332 (394)
T ss_pred CeEEEEECCCCCEEEeecCCC--------ccCcEE---ECCEEEEEcCCCeEEEEECCCCcEEEcccccC--CCcccCCE
Confidence 999999999998776543211 111111 1267778888999999998743 322221111 11111111
Q ss_pred ECCCCCEEEEEeCCCeEEEEEcCCCeeEEeccccCCCeEE-EEEcCCCCeEEEEECCCeEEEecC
Q 010362 449 VSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIG-VTHHPHRNLLATYGEDCTMKLWKP 512 (512)
Q Consensus 449 ~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~-v~~~p~~~~l~s~~~dg~i~iW~~ 512 (512)
+ .+.+|+.++.+|.+++.|..+|+.+...+.....+.+ ..+ .+..|+.++.||.|..+++
T Consensus 333 v--~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~~~~~~~s~P~~--~~~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 333 L--YNGYLVVGDSEGYLHWINREDGRFVAQQKVDSSGFLSEPVV--ADDKLLIQARDGTVYAITR 393 (394)
T ss_pred E--ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCcceeCCEE--ECCEEEEEeCCceEEEEeC
Confidence 1 3567888999999999999999988776543333321 112 3457888899999988764
No 293
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=99.18 E-value=3.3e-10 Score=100.37 Aligned_cols=165 Identities=19% Similarity=0.294 Sum_probs=115.5
Q ss_pred eEEEEECCCCCEEEEEeCCCeEEEEEcCCCeeeccccccccceeeccCcceeEEEEcCCCCeEEEE---eCCCeEEEEEc
Q 010362 216 AECARFSPDGQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASG---SQDGKIKVWRI 292 (512)
Q Consensus 216 v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~---~~dg~i~vwd~ 292 (512)
...+..+|.++++|++..+....++++........+ -. .+ .-...-+.+.|..+......+ +....+.+|..
T Consensus 65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl--~~--~~-~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~ 139 (390)
T KOG3914|consen 65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKL--LD--VS-CVPKRPTAISFIREDTSVLVADKAGDVYSFDILSA 139 (390)
T ss_pred ccccccCCCceEEEEEeCCCceEEEEEecCCCccee--ee--Ee-ecccCcceeeeeeccceEEEEeecCCceeeeeecc
Confidence 445667889999999988888777776544321100 00 00 022233444444444444444 34455666665
Q ss_pred cCCeeeEEeccccccCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEe-eCCccceeEEEEcCCCCEEEEEeCCCc
Q 010362 293 RSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEF-RGHSSYVNDAIFTNDGSRVVTASSDCT 371 (512)
Q Consensus 293 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~ 371 (512)
..+.+...+ +|-..+..++|+||+++|+++..|..|++-.....-.+..+ -||...|..++..++ ..|++++.|++
T Consensus 140 ~~~~~~~~l--GhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~-~~LlS~sGD~t 216 (390)
T KOG3914|consen 140 DSGRCEPIL--GHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN-YLLLSGSGDKT 216 (390)
T ss_pred cccCcchhh--hhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccC-ceeeecCCCCc
Confidence 555544333 79999999999999999999999999999877665555554 469999999999876 45899999999
Q ss_pred EEEEeCCCCceeeecCC
Q 010362 372 VKVWDLKSTDCLQTFKP 388 (512)
Q Consensus 372 i~iwd~~~~~~~~~~~~ 388 (512)
+++||+++++.+.++..
T Consensus 217 lr~Wd~~sgk~L~t~dl 233 (390)
T KOG3914|consen 217 LRLWDITSGKLLDTCDL 233 (390)
T ss_pred EEEEecccCCcccccch
Confidence 99999999998876653
No 294
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.15 E-value=7.1e-08 Score=92.42 Aligned_cols=201 Identities=12% Similarity=0.088 Sum_probs=127.3
Q ss_pred CeEEEEEccCCeeeEEeccccccCeEEEEEecCCCE-EEEEeCC---CcEEEEeCCCCceeEEeeCCccceeEEEEcCCC
Q 010362 285 GKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQ-ILSTSFD---STARIHGLKSGKLLKEFRGHSSYVNDAIFTNDG 360 (512)
Q Consensus 285 g~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-l~~~~~d---g~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~ 360 (512)
..|.+-|.+ |...+.+... +.+....|+|||+. ++..+.+ ..|+++|+.+++...... ..+......|+|||
T Consensus 169 ~~l~~~d~d-g~~~~~~~~~--~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPDG 244 (419)
T PRK04043 169 SNIVLADYT-LTYQKVIVKG--GLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSKDG 244 (419)
T ss_pred ceEEEECCC-CCceeEEccC--CCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECCCC
Confidence 355565654 3334444322 37888999999985 6654443 469999998876544333 44556667899999
Q ss_pred CEEEEE-eCC--CcEEEEeCCCCceeeecCCCCCCCCCCceeEEEEEcCCCCCeEEEEcCCC--cEEEEecCCeEEEEee
Q 010362 361 SRVVTA-SSD--CTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTS--SIYIMTLQGQVVKSFS 435 (512)
Q Consensus 361 ~~l~~~-~~d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~--~i~~~~~~~~~~~~~~ 435 (512)
+.++.. +.+ ..|.++|+.++... .+... ........|+|++..++++....+ .|+++|+.+.....+.
T Consensus 245 ~~la~~~~~~g~~~Iy~~dl~~g~~~-~LT~~------~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt 317 (419)
T PRK04043 245 SKLLLTMAPKGQPDIYLYDTNTKTLT-QITNY------PGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVV 317 (419)
T ss_pred CEEEEEEccCCCcEEEEEECCCCcEE-EcccC------CCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCc
Confidence 877644 333 46888888777533 23211 112234579999977777766555 5777788765554443
Q ss_pred CCcccCCcEEEEEECCCCCEEEEEeCC---------CeEEEEEcCCCeeEEeccccCCCeEEEEEcCCCCeEEEEEC
Q 010362 436 SGKREGGDFVAACVSPKGEWIYCVGED---------RNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPHRNLLATYGE 503 (512)
Q Consensus 436 ~~~~~~~~~~~~~~s~~g~~l~~g~~d---------g~i~iwd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~~~ 503 (512)
.... . ...|||||++|+..+.. ..|++.|+.++....... . .......|+|||+.++-.+.
T Consensus 318 ~~g~----~-~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~LT~-~-~~~~~p~~SPDG~~I~f~~~ 387 (419)
T PRK04043 318 FHGK----N-NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRRLTA-N-GVNQFPRFSSDGGSIMFIKY 387 (419)
T ss_pred cCCC----c-CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEECCC-C-CCcCCeEECCCCCEEEEEEc
Confidence 3211 1 24899999999877643 368889988887543332 2 22335889999997776554
No 295
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=99.12 E-value=7.9e-08 Score=85.83 Aligned_cols=227 Identities=18% Similarity=0.234 Sum_probs=143.6
Q ss_pred CCeEEEEEcCCCeeeccccccccceeeccCcceeEEEEcCCCCeEEEEeCCCeEEEEEccCCeeeEEeccccccCeEEEE
Q 010362 234 DGFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLV 313 (512)
Q Consensus 234 dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~ 313 (512)
+|+|..||..+|+.......... . ....+. ..+++..+++++.++.+..||..+|+.+.++.. ...+....
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~-----~-~~~~~~-~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~--~~~~~~~~ 72 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPG-----I-GGPVAT-AVPDGGRVYVASGDGNLYALDAKTGKVLWRFDL--PGPISGAP 72 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSS-----C-SSEEET-EEEETTEEEEEETTSEEEEEETTTSEEEEEEEC--SSCGGSGE
T ss_pred CCEEEEEECCCCCEEEEEECCCC-----C-CCccce-EEEeCCEEEEEcCCCEEEEEECCCCCEEEEeec--ccccccee
Confidence 68899999999988776543210 1 112211 223566778888999999999999999888763 22222112
Q ss_pred EecCCCEEEEEeCCCcEEEEeCCCCceeEEe-eCCcc---ceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeecCCC
Q 010362 314 FSRDGSQILSTSFDSTARIHGLKSGKLLKEF-RGHSS---YVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPP 389 (512)
Q Consensus 314 ~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~-~~~~~---~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 389 (512)
..++..+++++.++.++.+|..+|+.+... ..... ..........++.++.+..++.|..+|.++|+.+......
T Consensus 73 -~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~ 151 (238)
T PF13360_consen 73 -VVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVG 151 (238)
T ss_dssp -EEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESS
T ss_pred -eecccccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecC
Confidence 224567777878899999999999998884 33211 1122233334778898988999999999999987776553
Q ss_pred CCCCCCC----ceeEEEEEcCCCCCeEEEEcCCCcEEEEecCCeEEEEeeCCcccCCcEEEEEECCCCCEEEEEeCCCeE
Q 010362 390 PPLRGGD----ASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNL 465 (512)
Q Consensus 390 ~~~~~~~----~~i~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~dg~i 465 (512)
....... ..+..-.... + ..++++..++.+..+|....... +.... . . . ......++..+++++.++.|
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~-~-~~v~~~~~~g~~~~~d~~tg~~~-w~~~~-~-~-~-~~~~~~~~~~l~~~~~~~~l 224 (238)
T PF13360_consen 152 EPRGSSPISSFSDINGSPVIS-D-GRVYVSSGDGRVVAVDLATGEKL-WSKPI-S-G-I-YSLPSVDGGTLYVTSSDGRL 224 (238)
T ss_dssp TT-SS--EEEETTEEEEEECC-T-TEEEEECCTSSEEEEETTTTEEE-EEECS-S---E-CECEECCCTEEEEEETTTEE
T ss_pred CCCCCcceeeecccccceEEE-C-CEEEEEcCCCeEEEEECCCCCEE-EEecC-C-C-c-cCCceeeCCEEEEEeCCCEE
Confidence 2111000 1112222222 2 37777777776444488854433 22221 1 1 1 12245778888888899999
Q ss_pred EEEEcCCCeeEE
Q 010362 466 YCFSHQSGKLEH 477 (512)
Q Consensus 466 ~iwd~~~~~~~~ 477 (512)
..||+.+|+.+-
T Consensus 225 ~~~d~~tG~~~W 236 (238)
T PF13360_consen 225 YALDLKTGKVVW 236 (238)
T ss_dssp EEEETTTTEEEE
T ss_pred EEEECCCCCEEe
Confidence 999999998764
No 296
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.10 E-value=4.1e-07 Score=81.44 Aligned_cols=221 Identities=16% Similarity=0.174 Sum_probs=146.8
Q ss_pred EEEECC-CCCEEEEEeCCCeEEEEEcCCCeeeccccccccceeeccCcceeEEEEc-CCCCeEEEEeCCCeEEEEEccCC
Q 010362 218 CARFSP-DGQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFS-RDSEMLASGSQDGKIKVWRIRSG 295 (512)
Q Consensus 218 ~~~~s~-~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s-~~~~~l~s~~~dg~i~vwd~~~~ 295 (512)
++.|.+ ++.++++-...+.|..|+..++.... + .......+++. +++ .++.+... .+.++|..++
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~----------~~~~~~G~~~~~~~g-~l~v~~~~-~~~~~d~~~g 70 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-I----------DLPGPNGMAFDRPDG-RLYVADSG-GIAVVDPDTG 70 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-E----------ESSSEEEEEEECTTS-EEEEEETT-CEEEEETTTT
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-E----------ecCCCceEEEEccCC-EEEEEEcC-ceEEEecCCC
Confidence 578888 77777777789999999988876432 1 11226777777 565 55555554 4566699988
Q ss_pred eeeEEecc---c-cccCeEEEEEecCCCEEEEEeCC--------CcEEEEeCCCCceeEEeeCCccceeEEEEcCCCCEE
Q 010362 296 QCLRRLER---A-HSEGVTSLVFSRDGSQILSTSFD--------STARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRV 363 (512)
Q Consensus 296 ~~~~~~~~---~-~~~~i~~~~~~~~~~~l~~~~~d--------g~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 363 (512)
+....... . .....+.+++.|+|+..++.... |.|..++.. ++...... .-...+.++|+|+++.|
T Consensus 71 ~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~-~~~~pNGi~~s~dg~~l 148 (246)
T PF08450_consen 71 KVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD-GLGFPNGIAFSPDGKTL 148 (246)
T ss_dssp EEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE-EESSEEEEEEETTSSEE
T ss_pred cEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEec-CcccccceEECCcchhe
Confidence 65444332 1 34568899999999977665543 557778776 44433333 34557899999999977
Q ss_pred E-EEeCCCcEEEEeCCCCce-e---eecCCCCCCCCCCceeEEEEEcCCCCCeEEEEcCCCcEEEEecCCeEEEEeeCCc
Q 010362 364 V-TASSDCTVKVWDLKSTDC-L---QTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQVVKSFSSGK 438 (512)
Q Consensus 364 ~-~~~~dg~i~iwd~~~~~~-~---~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~ 438 (512)
+ +-+..+.|..|++..... + ..+.. ..........+++..++ .+.++....+.|.+++.+|..+..+....
T Consensus 149 yv~ds~~~~i~~~~~~~~~~~~~~~~~~~~---~~~~~g~pDG~~vD~~G-~l~va~~~~~~I~~~~p~G~~~~~i~~p~ 224 (246)
T PF08450_consen 149 YVADSFNGRIWRFDLDADGGELSNRRVFID---FPGGPGYPDGLAVDSDG-NLWVADWGGGRIVVFDPDGKLLREIELPV 224 (246)
T ss_dssp EEEETTTTEEEEEEEETTTCCEEEEEEEEE----SSSSCEEEEEEEBTTS--EEEEEETTTEEEEEETTSCEEEEEE-SS
T ss_pred eecccccceeEEEeccccccceeeeeeEEE---cCCCCcCCCcceEcCCC-CEEEEEcCCCEEEEECCCccEEEEEcCCC
Confidence 5 556678899998864322 1 11111 11222457889999877 78888888999999999988887776652
Q ss_pred ccCCcEEEEEE-CCCCCEEEEEe
Q 010362 439 REGGDFVAACV-SPKGEWIYCVG 460 (512)
Q Consensus 439 ~~~~~~~~~~~-s~~g~~l~~g~ 460 (512)
..+++++| .++.+.|+..+
T Consensus 225 ---~~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 225 ---PRPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp ---SSEEEEEEESTTSSEEEEEE
T ss_pred ---CCEEEEEEECCCCCEEEEEe
Confidence 25888999 57777666554
No 297
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.10 E-value=7.7e-11 Score=114.04 Aligned_cols=221 Identities=21% Similarity=0.271 Sum_probs=155.1
Q ss_pred ccceeeccCcceeEEEEcCCCCeEEEEeCCCeEEEEEccCCeeeEEeccccccCeEEEEEecCCCEEEEEeCCC--cEEE
Q 010362 255 ADETFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDS--TARI 332 (512)
Q Consensus 255 ~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg--~v~i 332 (512)
+-.++..|+...+|++|+.+.++|+.|+..|.|+++++.+|....... +|..+|+.+.-+.+|...++.+.-. ...+
T Consensus 1093 ~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~n-cH~SavT~vePs~dgs~~Ltsss~S~PlsaL 1171 (1516)
T KOG1832|consen 1093 SWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVN-CHQSAVTLVEPSVDGSTQLTSSSSSSPLSAL 1171 (1516)
T ss_pred cchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCcccccccc-ccccccccccccCCcceeeeeccccCchHHH
Confidence 344666799999999999999999999999999999999999988887 9999999999999998877665433 4678
Q ss_pred EeCCC-CceeEEeeCCccceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeecCCCCCCCCCCceeEEEEEcCCCCCe
Q 010362 333 HGLKS-GKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDH 411 (512)
Q Consensus 333 ~d~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 411 (512)
|++.+ +....+|.+ -.++.|+.....-+.|+......+||+.++....++-.... +....-+...|+|.+ .+
T Consensus 1172 W~~~s~~~~~Hsf~e----d~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~--~~~y~~n~a~FsP~D-~L 1244 (1516)
T KOG1832|consen 1172 WDASSTGGPRHSFDE----DKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTV--TSSYSNNLAHFSPCD-TL 1244 (1516)
T ss_pred hccccccCccccccc----cceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcch--hhhhhccccccCCCc-ce
Confidence 99854 344555543 45678877654445555556799999999988777443321 223344677888886 33
Q ss_pred EEEEcCCCcEEEEecCCe-EEEEeeCCcccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCeeEEeccccCCCeEEEE
Q 010362 412 IVVCNKTSSIYIMTLQGQ-VVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVT 490 (512)
Q Consensus 412 l~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~ 490 (512)
++ .|| .+||.+.. .+..+.... ....-.|+|+|.-++.-+ .|||+++-++++....-. -..|.
T Consensus 1245 Il---ndG--vLWDvR~~~aIh~FD~ft----~~~~G~FHP~g~eVIINS-----EIwD~RTF~lLh~VP~Ld--qc~Vt 1308 (1516)
T KOG1832|consen 1245 IL---NDG--VLWDVRIPEAIHRFDQFT----DYGGGGFHPSGNEVIINS-----EIWDMRTFKLLHSVPSLD--QCAVT 1308 (1516)
T ss_pred Ee---eCc--eeeeeccHHHHhhhhhhe----ecccccccCCCceEEeec-----hhhhhHHHHHHhcCcccc--ceEEE
Confidence 33 233 57888733 333332221 123456899999998877 489999988776654322 33567
Q ss_pred EcCCCCeEE
Q 010362 491 HHPHRNLLA 499 (512)
Q Consensus 491 ~~p~~~~l~ 499 (512)
|+..|..+.
T Consensus 1309 FNstG~VmY 1317 (1516)
T KOG1832|consen 1309 FNSTGDVMY 1317 (1516)
T ss_pred eccCccchh
Confidence 777666544
No 298
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=99.07 E-value=3.6e-07 Score=81.53 Aligned_cols=218 Identities=19% Similarity=0.236 Sum_probs=138.5
Q ss_pred CCeEEEEEccCCeeeEEecccc-ccCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeeCCccceeEEEEcCCCCE
Q 010362 284 DGKIKVWRIRSGQCLRRLERAH-SEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSR 362 (512)
Q Consensus 284 dg~i~vwd~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 362 (512)
+|+|..||..+|+.+.+..... .....+. ..+++..+++++.++.++.||..+|+.+..+... ..+.... ...+..
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~-~~~~~~~-~~~~~~ 78 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVAT-AVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLP-GPISGAP-VVDGGR 78 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEET-EEEETTEEEEEETTSEEEEEETTTSEEEEEEECS-SCGGSGE-EEETTE
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccce-EEEeCCEEEEEcCCCEEEEEECCCCCEEEEeecc-cccccee-eecccc
Confidence 6899999999999998885311 1222211 3335678888889999999999999998888752 2222222 224456
Q ss_pred EEEEeCCCcEEEEeCCCCceeeec-CCCCCCCCCCceeEEEEEcCCCCCeEEEEcCCCcEEEEecC-CeEEEEeeCCccc
Q 010362 363 VVTASSDCTVKVWDLKSTDCLQTF-KPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQ-GQVVKSFSSGKRE 440 (512)
Q Consensus 363 l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~~~~~-~~~~~~~~~~~~~ 440 (512)
++.++.++.+..+|..+++..... ....+... ........+. ...++++..++.+..+|.. |+.+.........
T Consensus 79 v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~-~~~~~~~~~~---~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~ 154 (238)
T PF13360_consen 79 VYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAG-VRSSSSPAVD---GDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPR 154 (238)
T ss_dssp EEEEETTSEEEEEETTTSCEEEEEEE-SSCTCS-TB--SEEEEE---TTEEEEEETCSEEEEEETTTTEEEEEEESSTT-
T ss_pred cccccceeeeEecccCCcceeeeeccccccccc-cccccCceEe---cCEEEEEeccCcEEEEecCCCcEEEEeecCCCC
Confidence 777778889999999999988874 32211111 1111222222 3778888889999999987 6666555543211
Q ss_pred C-C------cEEEEEECCCCCEEEEEeCCCeEEEEEcCCCeeEEeccccCCCeEEEEEcCCCCeEEEEECCCeEEEecC
Q 010362 441 G-G------DFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPHRNLLATYGEDCTMKLWKP 512 (512)
Q Consensus 441 ~-~------~~~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~~~dg~i~iW~~ 512 (512)
. . ....-....++ .++.++.+|.+..+|..+++.+.... ...+..+ ..+++..++.++.++.|..||+
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~~w~~~--~~~~~~~-~~~~~~~l~~~~~~~~l~~~d~ 229 (238)
T PF13360_consen 155 GSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGEKLWSKP--ISGIYSL-PSVDGGTLYVTSSDGRLYALDL 229 (238)
T ss_dssp SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTEEEEEEC--SS-ECEC-EECCCTEEEEEETTTEEEEEET
T ss_pred CCcceeeecccccceEEECC-EEEEEcCCCeEEEEECCCCCEEEEec--CCCccCC-ceeeCCEEEEEeCCCEEEEEEC
Confidence 1 1 12233333345 78888878864444999999664322 2223331 3457777888889999999985
No 299
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.07 E-value=2.6e-08 Score=96.29 Aligned_cols=188 Identities=16% Similarity=0.234 Sum_probs=136.5
Q ss_pred cCceEEEEECCCCCEEEEEeCCCeEEEEEcCCCeeeccccccccceeeccCcceeEEEEcCCCCeEEEEeCCCeEEEEEc
Q 010362 213 KSHAECARFSPDGQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWRI 292 (512)
Q Consensus 213 ~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~vwd~ 292 (512)
.+.++|++++ +++|+-|+.+|.|++++....- ... ..|... ..+|.++++|+.||+|.|-.+
T Consensus 39 ~D~is~~av~--~~~~~~GtH~g~v~~~~~~~~~-~~~---------~~~s~~------~~~Gey~asCS~DGkv~I~sl 100 (846)
T KOG2066|consen 39 NDAISCCAVH--DKFFALGTHRGAVYLTTCQGNP-KTN---------FDHSSS------ILEGEYVASCSDDGKVVIGSL 100 (846)
T ss_pred hhHHHHHHhh--cceeeeccccceEEEEecCCcc-ccc---------cccccc------ccCCceEEEecCCCcEEEeec
Confidence 3456777775 5689999999999999865432 111 114433 568999999999999999999
Q ss_pred cCCeeeEEeccccccCeEEEEEecC-----CCEEEEEeCCCcEEEEeCCCC--ceeEEeeCCccceeEEEEcCCCCEEEE
Q 010362 293 RSGQCLRRLERAHSEGVTSLVFSRD-----GSQILSTSFDSTARIHGLKSG--KLLKEFRGHSSYVNDAIFTNDGSRVVT 365 (512)
Q Consensus 293 ~~~~~~~~~~~~~~~~i~~~~~~~~-----~~~l~~~~~dg~v~i~d~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~ 365 (512)
.+++...++. ...++.+++++|+ .+.+++|+.-| +.++.-+-- +....+....++|.++.|. |++++-
T Consensus 101 ~~~~~~~~~d--f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAW 175 (846)
T KOG2066|consen 101 FTDDEITQYD--FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAW 175 (846)
T ss_pred cCCccceeEe--cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec--CcEEEE
Confidence 9988777764 6789999999997 57899999888 766643211 1111345567899999996 668888
Q ss_pred EeCCCcEEEEeCCCCceeeecCCCCCCCCCCceeEEEEEcCCCCCeEEEEcCCCcEEEEecC
Q 010362 366 ASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQ 427 (512)
Q Consensus 366 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~~~~~ 427 (512)
++.+| |++||+.+++.+..++++......+.....+.|.+.. .++.| ...+|++..++
T Consensus 176 and~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~--~LVIG-W~d~v~i~~I~ 233 (846)
T KOG2066|consen 176 ANDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDED--RLVIG-WGDSVKICSIK 233 (846)
T ss_pred ecCCC-cEEEeccccceeeccCCCCCCCCcccCCCceEecCCC--eEEEe-cCCeEEEEEEe
Confidence 88776 9999999999888888777555555566677887753 44443 44456666665
No 300
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=99.03 E-value=6.6e-07 Score=76.69 Aligned_cols=198 Identities=18% Similarity=0.213 Sum_probs=126.0
Q ss_pred EEEecCCCEEEEEeCCCcEEEEeCCCC--ceeEEeeCC---ccceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeec
Q 010362 312 LVFSRDGSQILSTSFDSTARIHGLKSG--KLLKEFRGH---SSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTF 386 (512)
Q Consensus 312 ~~~~~~~~~l~~~~~dg~v~i~d~~~~--~~~~~~~~~---~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 386 (512)
++.+++|+.||+.- |..|-+-..+.. ..+.+.+.. ...=+.++|+||+..|+.+...|+|++||+.. ..+..+
T Consensus 3 ~~~~~~Gk~lAi~q-d~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g-~~lf~I 80 (282)
T PF15492_consen 3 LALSSDGKLLAILQ-DQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMG-SELFVI 80 (282)
T ss_pred eeecCCCcEEEEEe-ccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEeccc-ceeEEc
Confidence 45667887776654 666666554432 222222222 22356799999999999999999999999875 444455
Q ss_pred CCCCCCC-CCCceeEEEEEcCCC-----CCeEEEEcCCCcEEEEecC------CeEEEEeeCCcccCCcEEEEEECCCCC
Q 010362 387 KPPPPLR-GGDASVNSVHLFPKN-----PDHIVVCNKTSSIYIMTLQ------GQVVKSFSSGKREGGDFVAACVSPKGE 454 (512)
Q Consensus 387 ~~~~~~~-~~~~~i~~~~~~~~~-----~~~l~~~~~~~~i~~~~~~------~~~~~~~~~~~~~~~~~~~~~~s~~g~ 454 (512)
.+..... .....|..+.|.+.. ...+++-+..|.++-|-+. ......+.........+.+++++|.-+
T Consensus 81 ~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~ 160 (282)
T PF15492_consen 81 PPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHR 160 (282)
T ss_pred CcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCC
Confidence 5433222 223456666665443 2356666667666655542 123334444333456799999999999
Q ss_pred EEEEEeC----CC-------eEEEEEcCCCeeEE---------------------ec--------cccCCCeEEEEEcCC
Q 010362 455 WIYCVGE----DR-------NLYCFSHQSGKLEH---------------------LM--------KVHEKDVIGVTHHPH 494 (512)
Q Consensus 455 ~l~~g~~----dg-------~i~iwd~~~~~~~~---------------------~~--------~~h~~~v~~v~~~p~ 494 (512)
+|++||. ++ -+..|.+-++.+-. .+ ......|..|..|||
T Consensus 161 LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPd 240 (282)
T PF15492_consen 161 LLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPD 240 (282)
T ss_pred EEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEECCC
Confidence 8888772 11 36677654432110 00 012456889999999
Q ss_pred CCeEEEEECCCeEEEec
Q 010362 495 RNLLATYGEDCTMKLWK 511 (512)
Q Consensus 495 ~~~l~s~~~dg~i~iW~ 511 (512)
|..||+...+|.|.+|+
T Consensus 241 g~~La~ih~sG~lsLW~ 257 (282)
T PF15492_consen 241 GSLLACIHFSGSLSLWE 257 (282)
T ss_pred CCEEEEEEcCCeEEEEe
Confidence 99999999999999997
No 301
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.02 E-value=1.4e-08 Score=98.44 Aligned_cols=273 Identities=14% Similarity=0.159 Sum_probs=160.7
Q ss_pred EEEECCCCCEEEEEe----CCCeEEEEEcCCCeeeccccccccceeeccCcceeEEEEcCCCCeEEEEeCCCeEEEEEcc
Q 010362 218 CARFSPDGQFLVSCS----FDGFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWRIR 293 (512)
Q Consensus 218 ~~~~s~~~~~l~sg~----~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~vwd~~ 293 (512)
-.+|+|...++|+++ ..|+|-||- ++|+....+.+ .-.+++++|+|..-.|+.|-.-|.+.+|...
T Consensus 20 i~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt~---------P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~ 89 (1416)
T KOG3617|consen 20 ISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVTY---------PVHATSLCWHPEEFVLAQGWEMGVSDVQKTN 89 (1416)
T ss_pred ccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCccccc---------ceehhhhccChHHHHHhhccccceeEEEecC
Confidence 357999999999886 468999985 67775554432 2345679999998889999999999999977
Q ss_pred CCeeeEEeccccccCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeE------------------Eee----------
Q 010362 294 SGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLK------------------EFR---------- 345 (512)
Q Consensus 294 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~------------------~~~---------- 345 (512)
+.+. .+....|+.+|..+.|+|+|..++++..-|.|.+|....-..+. .+.
T Consensus 90 ~~e~-htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~g~~q~~~~~~hel~~~ltl~cfRL~~~~Ee~~~la 168 (1416)
T KOG3617|consen 90 TTET-HTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVIGEIQTSNIMQHELNDQLTLWCFRLSYDREEKFKLA 168 (1416)
T ss_pred Ccee-eeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeeeccccccchhhhhHhhceeeEEEEecCCChHHhhhhh
Confidence 6664 44445899999999999999999999999999999764211110 000
Q ss_pred -----CCcccee------------EEE--EcCCCCEEEEEeCCCcEEEEeCCCCceeeecCCCCCC----CCCCceeEEE
Q 010362 346 -----GHSSYVN------------DAI--FTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPL----RGGDASVNSV 402 (512)
Q Consensus 346 -----~~~~~v~------------~~~--~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~----~~~~~~i~~~ 402 (512)
+..+.+- ++. =.|+|..++.++.+|+|+-.|-. +++....+..... .+....+..+
T Consensus 169 KaaVtgDe~alD~~fnwk~~~a~rs~~ksgv~~g~~F~~~~~~GtVyyvdq~-g~~~~V~k~dS~vQmLf~~~~eai~~i 247 (1416)
T KOG3617|consen 169 KAAVTGDESALDEPFNWKESLAERSDEKSGVPKGTEFLFAGKSGTVYYVDQN-GRQRTVHKLDSEVQMLFMGYCEAISII 247 (1416)
T ss_pred hhhccCchhhhcccccCccchhhccccccCCCCCcEEEEEcCCceEEEEcCC-CcEEEEEEccchHHHHHhcccceEEEE
Confidence 0000000 000 12457778888888888877743 3333322211110 0011111111
Q ss_pred EE--------cCC-CCC-----eEE---EEcCCCcEEEEecCCeEEEEeeCCcccCCcEEEEEECCCCCEEEEEeCCCeE
Q 010362 403 HL--------FPK-NPD-----HIV---VCNKTSSIYIMTLQGQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNL 465 (512)
Q Consensus 403 ~~--------~~~-~~~-----~l~---~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~dg~i 465 (512)
.- .+. +.. .-+ .|+..|.|-+-...|-..+.-..+...+..+.++|++..+..++.|...|.+
T Consensus 248 ~e~lr~~l~~v~~~G~~ee~~~vk~sgk~GgrqGgiA~sEssGvLr~~eKyg~e~ge~~~c~cY~~~~~~l~agt~~gnv 327 (1416)
T KOG3617|consen 248 IEFLRDCLIFVLAKGTSEERCAVKVSGKLGGRQGGIACSESSGVLRKSEKYGLELGEGILCMCYGEKEIRLWAGTKEGNV 327 (1416)
T ss_pred eeeceeeEEEecCCCchHHhhhhhhccccCCccCccccccccccccCCcchhhhcCCceEEEEEeccceEEEecccCCcE
Confidence 11 110 000 000 0111122222111111111111222234568999999999999999999999
Q ss_pred EEEEcCCC-------eeEEeccc---cCCCeEEEEEcCCCCeEEEEE
Q 010362 466 YCFSHQSG-------KLEHLMKV---HEKDVIGVTHHPHRNLLATYG 502 (512)
Q Consensus 466 ~iwd~~~~-------~~~~~~~~---h~~~v~~v~~~p~~~~l~s~~ 502 (512)
.+|--... .-...+.+ -.+.|+.+.|.|-.+.++.-+
T Consensus 328 ~~w~~v~~~f~g~p~~d~w~l~~~~e~~g~I~~i~Wg~~k~~~avn~ 374 (1416)
T KOG3617|consen 328 TIWLDVNKGFQGDPTIDVWTLNGKRESLGKISLIRWGPIKSTAAVNT 374 (1416)
T ss_pred EEeeecCccccCCCCcceEEecCchhhccceEEEEeccccchhhhhh
Confidence 99964332 11222332 346799999999665554433
No 302
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.99 E-value=1.5e-07 Score=79.18 Aligned_cols=225 Identities=11% Similarity=0.068 Sum_probs=143.3
Q ss_pred CCCeEEEEeCCCeEEEEEccCCeeeEEeccccccCeEEEEEec-CCCEEEEEeCCCcEEEEeCCCCceeEEeeCCcccee
Q 010362 274 DSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSR-DGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVN 352 (512)
Q Consensus 274 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~ 352 (512)
...+||.|+..|...+|...+.+....+-..+...|+-+.=.- ....+..++.|.++++.++.-+..........-.+.
T Consensus 83 kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~n 162 (344)
T KOG4532|consen 83 KCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQN 162 (344)
T ss_pred cccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeecccccee
Confidence 3458999999999999999876654443323444332221111 123466778888888888854432222211112388
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEeCCCCc-eeeecCCCCCCCCCCceeEEEEEcCCCCCeEEEEcCCCcEEEEecCCe--
Q 010362 353 DAIFTNDGSRVVTASSDCTVKVWDLKSTD-CLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQ-- 429 (512)
Q Consensus 353 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~-- 429 (512)
+++++++++++++.+....|..|.+.... .+..+... .....-.+..|+..+ ..++++..||.+.+||++..
T Consensus 163 s~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a----~t~D~gF~~S~s~~~-~~FAv~~Qdg~~~I~DVR~~~t 237 (344)
T KOG4532|consen 163 SLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEA----PTSDHGFYNSFSEND-LQFAVVFQDGTCAIYDVRNMAT 237 (344)
T ss_pred eeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEec----ccCCCceeeeeccCc-ceEEEEecCCcEEEEEeccccc
Confidence 99999999999999999999999887532 11111111 112233456676665 88999999999999999832
Q ss_pred EEE-EeeCCcccCCcEEEEEECCCCC--EEEEEeCCCeEEEEEcCCCeeEEeccc-------cC-CCeEEEEEcCCCCeE
Q 010362 430 VVK-SFSSGKREGGDFVAACVSPKGE--WIYCVGEDRNLYCFSHQSGKLEHLMKV-------HE-KDVIGVTHHPHRNLL 498 (512)
Q Consensus 430 ~~~-~~~~~~~~~~~~~~~~~s~~g~--~l~~g~~dg~i~iwd~~~~~~~~~~~~-------h~-~~v~~v~~~p~~~~l 498 (512)
+.. .....+.+.+.+..+.|++.|. +|+..-.-+.+.+.|++++.-.+.+.. |. ..|..-.|+.++.-+
T Consensus 238 pm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~ 317 (344)
T KOG4532|consen 238 PMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENESN 317 (344)
T ss_pred chhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccccccccccccccccccCCCccc
Confidence 222 2223334688899999998664 455555678899999999875544322 22 336677777766544
Q ss_pred EEEEC
Q 010362 499 ATYGE 503 (512)
Q Consensus 499 ~s~~~ 503 (512)
.+.+.
T Consensus 318 ~v~~e 322 (344)
T KOG4532|consen 318 DVKNE 322 (344)
T ss_pred ccccc
Confidence 44443
No 303
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.99 E-value=1.2e-08 Score=99.70 Aligned_cols=183 Identities=16% Similarity=0.225 Sum_probs=140.6
Q ss_pred CCCeEEEEeCCCeEEEEEccCCeeeEEeccccccCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeeCCccceeE
Q 010362 274 DSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVND 353 (512)
Q Consensus 274 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~ 353 (512)
++..++.|+-...+..+|+.+.+..+... -..+.|.-+.. +++.+.+|...|+|.+-|.++.+.+.++..|.+.|.+
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~-v~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSD 222 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTN-VSASGVTIMRY--NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISD 222 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeee-ccCCceEEEEe--cCcEEEeecccceEEeecCCcCceeeeeeccccceee
Confidence 34567777777788899999888776665 33334555554 5889999999999999999999999999999999976
Q ss_pred EEEcCCCCEEEEEeC---------CCcEEEEeCCCCceeeecCCCCCCCCCCceeEEEEEcCCCCCeEEEEcCCCcEEEE
Q 010362 354 AIFTNDGSRVVTASS---------DCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIM 424 (512)
Q Consensus 354 ~~~~~~~~~l~~~~~---------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~~ 424 (512)
+. -.|+.|+++|. |.-|+|||+|+.+.+..+..+. ...-+.++|.-...+++++..|...+-
T Consensus 223 fD--v~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~-------~P~flrf~Psl~t~~~V~S~sGq~q~v 293 (1118)
T KOG1275|consen 223 FD--VQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPY-------GPQFLRFHPSLTTRLAVTSQSGQFQFV 293 (1118)
T ss_pred ee--ccCCeEEEeecccccccccccchhhhhhhhhhhccCCccccc-------CchhhhhcccccceEEEEecccceeec
Confidence 54 46889998874 5568999999877655544332 225577889888999999999999999
Q ss_pred ecC---CeEEEEeeCCcccCCcEEEEEECCCCCEEEEEeCCCeEEEEE
Q 010362 425 TLQ---GQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFS 469 (512)
Q Consensus 425 ~~~---~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~dg~i~iwd 469 (512)
|.. ........... .+..+..+++|++|+.++.|..+|.|.+|.
T Consensus 294 d~~~lsNP~~~~~~v~p-~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 294 DTATLSNPPAGVKMVNP-NGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred cccccCCCccceeEEcc-CCCcceeEEecCCCceEEEecccCcEeeec
Confidence 943 33233222222 344588999999999999999999999997
No 304
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.98 E-value=4.6e-07 Score=87.25 Aligned_cols=272 Identities=10% Similarity=0.096 Sum_probs=160.5
Q ss_pred CCCEEEEEeCCCeEEEEEcCCCeeeccccccccceeecc--Cccee-EEEEcCCCCeEEEEeCCCeEEEEEccCCeeeEE
Q 010362 224 DGQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMH--DETVL-CIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRR 300 (512)
Q Consensus 224 ~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h--~~~v~-~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~ 300 (512)
.+..+++++.+|.+.-+|..+|+............+... ...+. .+.. ++..++.++.+|.+..+|..+|+.+.+
T Consensus 68 ~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~v~v~~~~g~l~ald~~tG~~~W~ 145 (394)
T PRK11138 68 AYNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTV--AGGKVYIGSEKGQVYALNAEDGEVAWQ 145 (394)
T ss_pred ECCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEE--ECCEEEEEcCCCEEEEEECCCCCCccc
Confidence 456778888889999999999987765543221101000 00110 1111 355677788899999999999998887
Q ss_pred eccccccCeEE-EEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeeCCccce-----eEEEEcCCCCEEEEEeCCCcEEE
Q 010362 301 LERAHSEGVTS-LVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYV-----NDAIFTNDGSRVVTASSDCTVKV 374 (512)
Q Consensus 301 ~~~~~~~~i~~-~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v-----~~~~~~~~~~~l~~~~~dg~i~i 374 (512)
... ...+.+ ... .+..+++++.+|.+..+|.++|+.+..+....... .+... .+..++.++.+|.+..
T Consensus 146 ~~~--~~~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v--~~~~v~~~~~~g~v~a 219 (394)
T PRK11138 146 TKV--AGEALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPAT--AFGGAIVGGDNGRVSA 219 (394)
T ss_pred ccC--CCceecCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEE--ECCEEEEEcCCCEEEE
Confidence 752 222221 112 24567778889999999999999988776431111 11111 1335777788999999
Q ss_pred EeCCCCceeeecCCCCCCCCCC-ceeEEEEEcCC-CCCeEEEEcCCCcEEEEecC-CeEEEEeeCCcccCCcEEEEEECC
Q 010362 375 WDLKSTDCLQTFKPPPPLRGGD-ASVNSVHLFPK-NPDHIVVCNKTSSIYIMTLQ-GQVVKSFSSGKREGGDFVAACVSP 451 (512)
Q Consensus 375 wd~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~-~~~~l~~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~s~ 451 (512)
+|..+++............... .....+...|- ....+++++.++.++.+|.. ++..-...... ...+ ..
T Consensus 220 ~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~-----~~~~--~~ 292 (394)
T PRK11138 220 VLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREYGS-----VNDF--AV 292 (394)
T ss_pred EEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecCCC-----ccCc--EE
Confidence 9999988766543221110000 00001111110 12566777788999999987 44333222111 1111 22
Q ss_pred CCCEEEEEeCCCeEEEEEcCCCeeEEeccccC-CCeEEEEEcCCCCeEEEEECCCeEEEecC
Q 010362 452 KGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHE-KDVIGVTHHPHRNLLATYGEDCTMKLWKP 512 (512)
Q Consensus 452 ~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~-~~v~~v~~~p~~~~l~s~~~dg~i~iW~~ 512 (512)
++..++.++.+|.++.+|..+|+.+-....-. ....+... .+..++.++.||.|.+.|+
T Consensus 293 ~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v--~~g~l~v~~~~G~l~~ld~ 352 (394)
T PRK11138 293 DGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVL--YNGYLVVGDSEGYLHWINR 352 (394)
T ss_pred ECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEE--ECCEEEEEeCCCEEEEEEC
Confidence 56788888999999999999998765432111 11111111 2456777888898887764
No 305
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.97 E-value=5.4e-09 Score=99.65 Aligned_cols=246 Identities=15% Similarity=0.238 Sum_probs=162.0
Q ss_pred cCceEEEEECCCC--CEEEEEeCCCeEEEEEcCCCeeeccccccccceeeccCcceeEEEEcCCC-CeEEEEeCCCeEEE
Q 010362 213 KSHAECARFSPDG--QFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDS-EMLASGSQDGKIKV 289 (512)
Q Consensus 213 ~~~v~~~~~s~~~--~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~-~~l~s~~~dg~i~v 289 (512)
.-.|..+.|+|.. .+-++......-.+|++....... ....+.+|...|+.+-|+|.. ..+++++.|..+..
T Consensus 67 pw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss~~a-----Ief~lhghsraitd~n~~~q~pdVlatcsvdt~vh~ 141 (1081)
T KOG0309|consen 67 PWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSSNA-----IEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHA 141 (1081)
T ss_pred cchhcceecccCCCCceeEEecCcchhhhhhhhcCCccc-----eEEEEecCccceeccccCCCCCcceeecccccccee
Confidence 3456678888743 345555556677889876443211 122567899999999999954 58999999999999
Q ss_pred EEccCCee-eEEeccccccCeEEEEEecCCCEEEEEeCCCcEEEEeCCCC-ceeEEeeCCccceeEEEEcC-CCCEEEEE
Q 010362 290 WRIRSGQC-LRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSG-KLLKEFRGHSSYVNDAIFTN-DGSRVVTA 366 (512)
Q Consensus 290 wd~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~i~d~~~~-~~~~~~~~~~~~v~~~~~~~-~~~~l~~~ 366 (512)
||+++... +..+. .-......++|+-....+.+.+..+.|.+||.+.| .++..+++|...|+.+.|.. ....+.+.
T Consensus 142 wd~rSp~~p~ys~~-~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~ 220 (1081)
T KOG0309|consen 142 WDMRSPHRPFYSTS-SWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSS 220 (1081)
T ss_pred eeccCCCcceeeee-cccccCceeeecccCcchhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhccc
Confidence 99987653 44443 45567788999876556666677788999999876 56788899999999999875 33468889
Q ss_pred eCCCcEEEEeCCCCceeeecCCCCCCCCCCceeEEEEEcCCCCCeEEEEcCCCc-EEEEecC-----------CeEEEEe
Q 010362 367 SSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSS-IYIMTLQ-----------GQVVKSF 434 (512)
Q Consensus 367 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~-i~~~~~~-----------~~~~~~~ 434 (512)
+.||+|+.||........... .....++..-++.|-+..+.+.-...+. +.+++.+ ...+..+
T Consensus 221 ~~d~tvkfw~y~kSt~e~~~~-----vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F 295 (1081)
T KOG0309|consen 221 SNDGTVKFWDYSKSTTESKRT-----VTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTF 295 (1081)
T ss_pred CCCCceeeeccccccccccee-----ccccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeee
Confidence 999999999987543222111 1234566777777777555554443333 2233222 1223333
Q ss_pred eCCcccCCcEEEEEEC----------CCCCEEEEEeCCCeEEEEEcCC
Q 010362 435 SSGKREGGDFVAACVS----------PKGEWIYCVGEDRNLYCFSHQS 472 (512)
Q Consensus 435 ~~~~~~~~~~~~~~~s----------~~g~~l~~g~~dg~i~iwd~~~ 472 (512)
..+ ...|....|- ...-.|++-+.|..+++|-+.+
T Consensus 296 ~GH---~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 296 VGH---DDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDS 340 (1081)
T ss_pred cCc---chHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeeccH
Confidence 332 2223222221 1123588999999999998754
No 306
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.94 E-value=3e-07 Score=81.90 Aligned_cols=247 Identities=13% Similarity=0.084 Sum_probs=148.0
Q ss_pred cceeeccCcceeEEEEcCCCC-eEEEEeCCCeEEEEEccCCeeeEEeccccccCeEEEEEecCC-CEEEEEeCCCcEEEE
Q 010362 256 DETFMMHDETVLCIEFSRDSE-MLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDG-SQILSTSFDSTARIH 333 (512)
Q Consensus 256 ~~~~~~h~~~v~~l~~s~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~v~i~ 333 (512)
.+.+.+|...|..++|+|..+ ++..++.+..|+|.|+++...+..+. .+ ..+.+++|.-|. ++|++|..+|.|.+|
T Consensus 186 sq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~-a~-~~~wSC~wDlde~h~IYaGl~nG~Vlvy 263 (463)
T KOG1645|consen 186 SQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYI-AY-NQIWSCCWDLDERHVIYAGLQNGMVLVY 263 (463)
T ss_pred hhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeehee-cc-CCceeeeeccCCcceeEEeccCceEEEE
Confidence 345667889999999999776 78889999999999999999888886 34 889999998864 567778889999999
Q ss_pred eCCCCce-eEEeeC--CccceeEEEE------cCCCCEEEEEeCCCcEEEEeCCCCceeeecCCCCCCCCCCceeEEEEE
Q 010362 334 GLKSGKL-LKEFRG--HSSYVNDAIF------TNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHL 404 (512)
Q Consensus 334 d~~~~~~-~~~~~~--~~~~v~~~~~------~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 404 (512)
|++..+- +..+.+ ...+|..++. .+.|.+++.+..+ +..|++....... +.....+..+...++..
T Consensus 264 D~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~---p~vlele~pG~cismqy 338 (463)
T KOG1645|consen 264 DMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECL---PCVLELEPPGICISMQY 338 (463)
T ss_pred EccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCC---CcccccCCCcceeeeee
Confidence 9986543 222222 1234444433 2334444444433 5566654321110 00001122455666666
Q ss_pred cCCCCCeEEEEcCCCc------E--EEEecCCeEEEEeeCCc----ccCC-cEEEEEECCCCCEEEE-EeCCCeEEEEEc
Q 010362 405 FPKNPDHIVVCNKTSS------I--YIMTLQGQVVKSFSSGK----REGG-DFVAACVSPKGEWIYC-VGEDRNLYCFSH 470 (512)
Q Consensus 405 ~~~~~~~l~~~~~~~~------i--~~~~~~~~~~~~~~~~~----~~~~-~~~~~~~s~~g~~l~~-g~~dg~i~iwd~ 470 (512)
.+.....+++.-.+.. + ++-+.+|..+....... ...- .-..+.-.++.++|+. |++.+.+.+||.
T Consensus 339 ~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~D~ 418 (463)
T KOG1645|consen 339 HGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQDP 418 (463)
T ss_pred cCccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCcceeEEecc
Confidence 6665455555544321 1 11122233322211111 0000 0012222455566654 446678999999
Q ss_pred CCCeeEEeccccCCCeEEEEEcC-C-CCeEEEEECCCeEEEec
Q 010362 471 QSGKLEHLMKVHEKDVIGVTHHP-H-RNLLATYGEDCTMKLWK 511 (512)
Q Consensus 471 ~~~~~~~~~~~h~~~v~~v~~~p-~-~~~l~s~~~dg~i~iW~ 511 (512)
.+++.++.+.. +.+|..++... + +.+|+.-. |..++|++
T Consensus 419 ~s~evvQ~l~~-~epv~Dicp~~~n~~syLa~LT-d~~v~Iyk 459 (463)
T KOG1645|consen 419 HSFEVVQTLAL-SEPVLDICPNDTNGSSYLALLT-DDRVHIYK 459 (463)
T ss_pred chhheeeeccc-CcceeecceeecCCcchhhhee-cceEEEEe
Confidence 99999999874 47888877665 3 34666655 55677764
No 307
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.92 E-value=8.1e-09 Score=89.79 Aligned_cols=159 Identities=21% Similarity=0.413 Sum_probs=123.2
Q ss_pred EEECC--CCCEEEEEeCCCeEEEEEcCCCeeeccccccccceeeccCcceeEEEEcCCCCeEEEEeCCCeEEEEEccCC-
Q 010362 219 ARFSP--DGQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSG- 295 (512)
Q Consensus 219 ~~~s~--~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~vwd~~~~- 295 (512)
++|+- .|-. ++.+.+-.|-+-|+++|.... | ...+.|.++.|...++++..|+.+|.|..+|++.+
T Consensus 217 CawSlni~gyh-fs~G~sqqv~L~nvetg~~qs---------f-~sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rn 285 (425)
T KOG2695|consen 217 CAWSLNIMGYH-FSVGLSQQVLLTNVETGHQQS---------F-QSKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRN 285 (425)
T ss_pred hhhhhccceee-ecccccceeEEEEeecccccc---------c-ccchhHHHHHhcccCCeeEecccCCcEEEEEeeecc
Confidence 36653 3434 344447778888988875322 1 15678999999998999999999999999999864
Q ss_pred ----eeeEEeccccccCeEEEEEec-CCCEEEEEeCCCcEEEEeCCCCce---eEEeeCCcccee--EEEEcCCCCEEEE
Q 010362 296 ----QCLRRLERAHSEGVTSLVFSR-DGSQILSTSFDSTARIHGLKSGKL---LKEFRGHSSYVN--DAIFTNDGSRVVT 365 (512)
Q Consensus 296 ----~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~v~i~d~~~~~~---~~~~~~~~~~v~--~~~~~~~~~~l~~ 365 (512)
.+...+ -|...|+++.... ++.+|++.+.+|.|++||.+.-++ +.++.+|-..-. -+...+....+++
T Consensus 286 qG~~~~a~rl--yh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s 363 (425)
T KOG2695|consen 286 QGNGWCAQRL--YHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFS 363 (425)
T ss_pred cCCCcceEEE--EcCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEE
Confidence 445555 4889999998777 788999999999999999987777 888888854322 2334566678899
Q ss_pred EeCCCcEEEEeCCCCceeeecCCCC
Q 010362 366 ASSDCTVKVWDLKSTDCLQTFKPPP 390 (512)
Q Consensus 366 ~~~dg~i~iwd~~~~~~~~~~~~~~ 390 (512)
++.|...+||.++.+..+.+++.+.
T Consensus 364 ~GdDcytRiWsl~~ghLl~tipf~~ 388 (425)
T KOG2695|consen 364 VGDDCYTRIWSLDSGHLLCTIPFPY 388 (425)
T ss_pred ccCeeEEEEEecccCceeeccCCCC
Confidence 9999999999999999988887654
No 308
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.91 E-value=5.8e-06 Score=69.76 Aligned_cols=144 Identities=14% Similarity=0.115 Sum_probs=100.1
Q ss_pred CCEEEEEeCCCeEEEEEcCCCeeeccccccccceeeccCcceeEEEEcCCCCeEEEEeCCCeEEEEEccCCeeeEEeccc
Q 010362 225 GQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERA 304 (512)
Q Consensus 225 ~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~ 304 (512)
..+++.|+..+.+.--|..+|+...+-. -...|-+-+.- -|++++.|+..|.+++.+..+|+....+...
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~i---------lg~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~ 92 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAI---------LGVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVIL 92 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehh---------hCceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeeh
Confidence 4577888888888888888888765432 22333332222 3678999999999999999999887777632
Q ss_pred cccCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeeCCccceeEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 010362 305 HSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKS 379 (512)
Q Consensus 305 ~~~~i~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 379 (512)
..-.+ .....+++..+..|+.|++.+..|.++..++...+...+...+-+..|....|..+...|.+.--....
T Consensus 93 ~~vk~-~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~a~t~G~vlavt~~~ 166 (354)
T KOG4649|consen 93 ETVKV-RAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYAAITAGAVLAVTKNP 166 (354)
T ss_pred hhhcc-ceEEcCCCceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceEEEEeccceEEEEccCC
Confidence 22222 334567899999999999999999999999888776555455556666333455555556555444443
No 309
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.91 E-value=4.4e-09 Score=63.56 Aligned_cols=39 Identities=26% Similarity=0.523 Sum_probs=36.9
Q ss_pred CeeEEeccccCCCeEEEEEcCCCCeEEEEECCCeEEEec
Q 010362 473 GKLEHLMKVHEKDVIGVTHHPHRNLLATYGEDCTMKLWK 511 (512)
Q Consensus 473 ~~~~~~~~~h~~~v~~v~~~p~~~~l~s~~~dg~i~iW~ 511 (512)
++++..+.+|.+.|++++|+|++.+|++++.|++|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 467889999999999999999999999999999999997
No 310
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.91 E-value=2.9e-06 Score=80.22 Aligned_cols=264 Identities=17% Similarity=0.296 Sum_probs=154.5
Q ss_pred CCCCCEEEEEe---------CCCeEEEEEcCCCeeeccccccccceeeccCcceeEEEEcCCCCeEEEEeCCCeEEEEEc
Q 010362 222 SPDGQFLVSCS---------FDGFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWRI 292 (512)
Q Consensus 222 s~~~~~l~sg~---------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~vwd~ 292 (512)
|||+++++... ..+.+.|||+.+++...... ....+....|||+|+.+|... ++.|.+++.
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~---------~~~~~~~~~~sP~g~~~~~v~-~~nly~~~~ 70 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTP---------PPPKLQDAKWSPDGKYIAFVR-DNNLYLRDL 70 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS----------EETTBSEEEE-SSSTEEEEEE-TTEEEEESS
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcC---------CccccccceeecCCCeeEEEe-cCceEEEEC
Confidence 68888877642 35679999999977554322 256788999999999999886 678999998
Q ss_pred cCCeeeEEecccc----------------ccCeEEEEEecCCCEEEEEeCC-C---------------------------
Q 010362 293 RSGQCLRRLERAH----------------SEGVTSLVFSRDGSQILSTSFD-S--------------------------- 328 (512)
Q Consensus 293 ~~~~~~~~~~~~~----------------~~~i~~~~~~~~~~~l~~~~~d-g--------------------------- 328 (512)
.++...+....+. -+.-..+.|+||+++|+....| .
T Consensus 71 ~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk 150 (353)
T PF00930_consen 71 ATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPK 150 (353)
T ss_dssp TTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--B
T ss_pred CCCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCC
Confidence 8775443322120 1123578899999998876433 1
Q ss_pred --------cEEEEeCCCCceeE-Ee----eCCccceeEEEEcCCCCEEEEE--eCCC---cEEEEeCCCCceeeecCCCC
Q 010362 329 --------TARIHGLKSGKLLK-EF----RGHSSYVNDAIFTNDGSRVVTA--SSDC---TVKVWDLKSTDCLQTFKPPP 390 (512)
Q Consensus 329 --------~v~i~d~~~~~~~~-~~----~~~~~~v~~~~~~~~~~~l~~~--~~dg---~i~iwd~~~~~~~~~~~~~~ 390 (512)
.+.++|+.+++... .. ......+..+.|.++++.++.. ..+. .+.++|..++.+........
T Consensus 151 ~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~ 230 (353)
T PF00930_consen 151 AGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETS 230 (353)
T ss_dssp TTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEES
T ss_pred CCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecC
Confidence 12344554444321 11 1223457788999998844333 3332 36677887765433332111
Q ss_pred CCCCCCceeEEEEEc-CCCCCeEEEEcCCCc--EEEEecCCeEEEEeeCCcccCCcEE-EEEECCCCCEEEE-EeC----
Q 010362 391 PLRGGDASVNSVHLF-PKNPDHIVVCNKTSS--IYIMTLQGQVVKSFSSGKREGGDFV-AACVSPKGEWIYC-VGE---- 461 (512)
Q Consensus 391 ~~~~~~~~i~~~~~~-~~~~~~l~~~~~~~~--i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~g~~l~~-g~~---- 461 (512)
. +--.......+. +++..++.....+|. |++++..+.....+..+. -.|. .+.++++++.|+. +..
T Consensus 231 ~--~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~~lT~G~---~~V~~i~~~d~~~~~iyf~a~~~~p~ 305 (353)
T PF00930_consen 231 D--GWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKPRQLTSGD---WEVTSILGWDEDNNRIYFTANGDNPG 305 (353)
T ss_dssp S--SSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEEEESS-SS---S-EEEEEEEECTSSEEEEEESSGGTT
T ss_pred C--cceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccceeccccCc---eeecccceEcCCCCEEEEEecCCCCC
Confidence 1 111222344444 777677777777776 455555666666555543 3353 4777888777654 443
Q ss_pred CCeEEEEEcC-CCeeEEeccccCCCeEEEEEcCCCCeEEEE
Q 010362 462 DRNLYCFSHQ-SGKLEHLMKVHEKDVIGVTHHPHRNLLATY 501 (512)
Q Consensus 462 dg~i~iwd~~-~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~ 501 (512)
...++.-++. .+.+ ..+....+.-..+.|||++++++-.
T Consensus 306 ~r~lY~v~~~~~~~~-~~LT~~~~~~~~~~~Spdg~y~v~~ 345 (353)
T PF00930_consen 306 ERHLYRVSLDSGGEP-KCLTCEDGDHYSASFSPDGKYYVDT 345 (353)
T ss_dssp SBEEEEEETTETTEE-EESSTTSSTTEEEEE-TTSSEEEEE
T ss_pred ceEEEEEEeCCCCCe-EeccCCCCCceEEEECCCCCEEEEE
Confidence 2357777777 4444 4444333333689999999877643
No 311
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.89 E-value=2.3e-07 Score=83.80 Aligned_cols=262 Identities=13% Similarity=0.121 Sum_probs=173.8
Q ss_pred ecCcCceEEEEECCCCCEEEEEeCCCeEEEEEcCCCeeeccccccccceeeccCcceeEEEEcCCCCeEEEEeC-CCeEE
Q 010362 210 FGTKSHAECARFSPDGQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQ-DGKIK 288 (512)
Q Consensus 210 ~~h~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~-dg~i~ 288 (512)
+-|++.|+.+.-+ ..+++.+++.||.++.|.-..-... .....+..|...|.+++.+-++.++.|.+. |..++
T Consensus 6 ymhrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGv-----EfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~K 79 (558)
T KOG0882|consen 6 YMHRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGV-----EFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVK 79 (558)
T ss_pred hcccceeeeEeee-hhheEEeeecchhhhhcCCCCccce-----eehhhhHHHHHHHHhhhccccceeEeeccCccccee
Confidence 3577878876544 4568999999999999974331211 122245558899999999999999999777 99999
Q ss_pred EEEccCCeeeEEeccccccCeEEEEEecCC--CEEEE-EeCCCcEEEEeCCCCc--eeEEeeCCccceeEEEEcCCCCEE
Q 010362 289 VWRIRSGQCLRRLERAHSEGVTSLVFSRDG--SQILS-TSFDSTARIHGLKSGK--LLKEFRGHSSYVNDAIFTNDGSRV 363 (512)
Q Consensus 289 vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~l~~-~~~dg~v~i~d~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l 363 (512)
++|+++-..+.-+....-....++..+|.. ..+++ .-.+|.+.++|-.... ....-.-|.++|..+.+++-+..+
T Consensus 80 vfDvEn~DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~ 159 (558)
T KOG0882|consen 80 VFDVENFDMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSA 159 (558)
T ss_pred EEEeeccchhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccce
Confidence 999987665544331111111222223221 13333 3457899999976543 233334589999999999999999
Q ss_pred EEEeCCCcEEEEeCCC------CceeeecCCCC---CCCCCCceeEEEEEcCCCCCeEEEEcCCCcEEEEecCCeEEEE-
Q 010362 364 VTASSDCTVKVWDLKS------TDCLQTFKPPP---PLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQVVKS- 433 (512)
Q Consensus 364 ~~~~~dg~i~iwd~~~------~~~~~~~~~~~---~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~- 433 (512)
++....|.|.-|.... .+....++... ..........++.++|++ ..+.+-+.|..|++++..++.+.+
T Consensus 160 vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g-~qistl~~DrkVR~F~~KtGklvqe 238 (558)
T KOG0882|consen 160 VSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDG-AQISTLNPDRKVRGFVFKTGKLVQE 238 (558)
T ss_pred eeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEcccc-CcccccCcccEEEEEEeccchhhhh
Confidence 9999999999998773 11111111111 112334667899999998 777777799999999987442211
Q ss_pred eeCC------------------------------cccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCeeEEec
Q 010362 434 FSSG------------------------------KREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLM 479 (512)
Q Consensus 434 ~~~~------------------------------~~~~~~~~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~ 479 (512)
+... .......+.++|...|++|+.|+-=| |.+.++.++...+.+
T Consensus 239 iDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ikvin~~tn~v~ri~ 313 (558)
T KOG0882|consen 239 IDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKVINLDTNTVVRIL 313 (558)
T ss_pred hhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEEEEeecCeEEEEe
Confidence 1100 00112345778999999999988654 678888887766544
No 312
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.89 E-value=2.4e-08 Score=83.53 Aligned_cols=160 Identities=12% Similarity=0.126 Sum_probs=102.2
Q ss_pred cCcCceEEEEECCCCCEEEEEeCCCeEEEEEcCCCeee-ccccccccceeeccCcceeEEEEcCCCCeEEEEeC-----C
Q 010362 211 GTKSHAECARFSPDGQFLVSCSFDGFIEVWDYLSGKLK-KDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQ-----D 284 (512)
Q Consensus 211 ~h~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~-~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~-----d 284 (512)
.|..+-.+-+.+-.++.++++..||.+.+++.+.-... ..+.. .|.+ -.+.+....++.+.++.. -
T Consensus 87 ~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~-------~~~~-~as~~~~~~~~~i~s~~~g~~n~~ 158 (319)
T KOG4714|consen 87 KNSEIDPNDACTMTDNRVCIGYADGSLAVFSTDKDLALMSRIPS-------IHSG-SASRKICRHGNSILSGGCGNWNAQ 158 (319)
T ss_pred ccCCCCCcccccccCCceEecCCCceEEEEechHHHhhhhhccc-------cccc-ccccceeecccEEecCCcceEeec
Confidence 44444444455556778999999999999987652111 10000 0111 112222233444444321 2
Q ss_pred CeEEEEEccCCeeeEEeccccccCeEEEEEecC-CCEEEEEeCCCcEEEEeCCCCce-eEEeeCCccceeEEEEcC-CCC
Q 010362 285 GKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRD-GSQILSTSFDSTARIHGLKSGKL-LKEFRGHSSYVNDAIFTN-DGS 361 (512)
Q Consensus 285 g~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~v~i~d~~~~~~-~~~~~~~~~~v~~~~~~~-~~~ 361 (512)
+..+.|+++..+....-. .....|.+++-+|. .+.+++|+.||.+.+||.+.... ...++.|+.++..+.|+| ++.
T Consensus 159 d~~~a~~~~p~~t~~~~~-~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~ 237 (319)
T KOG4714|consen 159 DNFYANTLDPIKTLIPSK-KALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPE 237 (319)
T ss_pred cceeeecccccccccccc-cccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCch
Confidence 345666665433322222 12334999999995 45667888899999999988744 345678999999999999 667
Q ss_pred EEEEEeCCCcEEEEeCCC
Q 010362 362 RVVTASSDCTVKVWDLKS 379 (512)
Q Consensus 362 ~l~~~~~dg~i~iwd~~~ 379 (512)
.|+++++||.+-.||..+
T Consensus 238 ~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 238 HLFTCSEDGSLWHWDAST 255 (319)
T ss_pred heeEecCCCcEEEEcCCC
Confidence 899999999999999774
No 313
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.88 E-value=1.5e-06 Score=88.37 Aligned_cols=274 Identities=13% Similarity=0.100 Sum_probs=159.0
Q ss_pred cCceEEEEECCCCCEEEEEeCCCeEEEEEcCCCeeeccccccccceeeccCcceeEEEEcCCCCeEEEEeCCCeEEEEEc
Q 010362 213 KSHAECARFSPDGQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWRI 292 (512)
Q Consensus 213 ~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~vwd~ 292 (512)
.+.|.++.|.-++.-++.+..+|.|.+-|.++..... ...-...|.+++||||+..++..+.++++.+..-
T Consensus 68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~ei---------vg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~ 138 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNSICVITALGDIILVDPETLELEI---------VGNVDNGISAASWSPDEELLALITGRQTLLFMTK 138 (1265)
T ss_pred CcceEEEEEecccceEEEEecCCcEEEEcccccceee---------eeeccCceEEEeecCCCcEEEEEeCCcEEEEEec
Confidence 3689999999999999999999999999877654322 1125678999999999999999998888777642
Q ss_pred cCCeeeEEec----cccccCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCce-eEEeeCCccceeEEEEcCCCCEEEEEe
Q 010362 293 RSGQCLRRLE----RAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKL-LKEFRGHSSYVNDAIFTNDGSRVVTAS 367 (512)
Q Consensus 293 ~~~~~~~~~~----~~~~~~i~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~ 367 (512)
+-.++.... ....+....+-|-.....| -|+ .|.....+....+. ......+ +.=+++.|-.||.++++..
T Consensus 139 -~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqf-rgs-~gr~~~~~~~~~ek~~~~~~~~-~~~~~IsWRgDg~~fAVs~ 214 (1265)
T KOG1920|consen 139 -DFEPIAEKPLDADDERKSKFVNVGWGRKETQF-RGS-EGRQAARQKIEKEKALEQIEQD-DHKTSISWRGDGEYFAVSF 214 (1265)
T ss_pred -cccchhccccccccccccccceecccccceee-ecc-hhhhcccccccccccccchhhc-cCCceEEEccCCcEEEEEE
Confidence 222221111 0111222333333222111 111 11111111111000 0001112 2235689999999998732
Q ss_pred ----CC-CcEEEEeCCCCceeeecCCCCCCCCCCceeEEEEEcCCCCCeEEEEc---CCCcEEEEecCCeEEEEeeCCcc
Q 010362 368 ----SD-CTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCN---KTSSIYIMTLQGQVVKSFSSGKR 439 (512)
Q Consensus 368 ----~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~---~~~~i~~~~~~~~~~~~~~~~~~ 439 (512)
.+ ..|++||-. +.....-.+ ..+.-.+++|-|.+ ..+++.. .++.|.++.-+|-.-..+.....
T Consensus 215 ~~~~~~~RkirV~drE-g~Lns~se~------~~~l~~~LsWkPsg-s~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p 286 (1265)
T KOG1920|consen 215 VESETGTRKIRVYDRE-GALNSTSEP------VEGLQHSLSWKPSG-SLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFP 286 (1265)
T ss_pred EeccCCceeEEEeccc-chhhcccCc------ccccccceeecCCC-CeEeeeeecCCCCcEEEEecCCccccccccCCc
Confidence 23 789999976 432222221 23345678899977 5555543 45678888887655444443332
Q ss_pred c-CCcEEEEEECCCCCEEEE---EeCCCeEEEEEcCCCe--eEEeccccCCCeEEEEEcCCC-CeEEEEECCCeEEE
Q 010362 440 E-GGDFVAACVSPKGEWIYC---VGEDRNLYCFSHQSGK--LEHLMKVHEKDVIGVTHHPHR-NLLATYGEDCTMKL 509 (512)
Q Consensus 440 ~-~~~~~~~~~s~~g~~l~~---g~~dg~i~iwd~~~~~--~~~~~~~h~~~v~~v~~~p~~-~~l~s~~~dg~i~i 509 (512)
. ...+..++|+.++..|++ ......|++|-+.+-. +.+.+....... +.|+|.. ..+..-..+|...+
T Consensus 287 ~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~NyhWYLKq~l~~~~~~~--~~W~p~~~~~L~v~~~sG~~~v 361 (1265)
T KOG1920|consen 287 LDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYHWYLKQELQFSQKAL--LMWDPVTEKTLHVLRESGQRLV 361 (1265)
T ss_pred ccccchheeeecCCCCceeeeecccccceEEEEEecCeEEEEEEEEecccccc--ccccCCCceeEEEEecCCcEEE
Confidence 2 233889999999999988 4455569999987754 223333222222 7787732 22333335555444
No 314
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.82 E-value=1.9e-05 Score=66.76 Aligned_cols=259 Identities=13% Similarity=0.106 Sum_probs=140.5
Q ss_pred CCCEEEEEeCCCeEEEEEcCCCeeeccccccccceeeccCcce-eEEEEcCCCCeEEEEeCCCeEEEEEccCCeeeEEec
Q 010362 224 DGQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHDETV-LCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLE 302 (512)
Q Consensus 224 ~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~v-~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~ 302 (512)
-|++++.|+..|.+++.+.++|+....+.. .+.| ......+++..+..|+.|++.+..|..+..++.+.+
T Consensus 62 vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~---------~~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVyksk 132 (354)
T KOG4649|consen 62 VGDFVVLGCYSGGLYFLCVKTGSQIWNFVI---------LETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSK 132 (354)
T ss_pred ECCEEEEEEccCcEEEEEecchhheeeeee---------hhhhccceEEcCCCceEEEecCCCcEEEecccccceEEecc
Confidence 577899999999999999999976654432 1122 223456789999999999999999999999888865
Q ss_pred cccccCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCce--eEEeeCCccceeE--EEEcCCCCEEEEEeCCCcEEEEeCC
Q 010362 303 RAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKL--LKEFRGHSSYVND--AIFTNDGSRVVTASSDCTVKVWDLK 378 (512)
Q Consensus 303 ~~~~~~i~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~--~~~~~~~~~~v~~--~~~~~~~~~l~~~~~dg~i~iwd~~ 378 (512)
...+...+-+..|-...|+.+...|.+.--..++... +.... -.+++.+ ++. +..+..+.-||.+.-+| .
T Consensus 133 -cgG~~f~sP~i~~g~~sly~a~t~G~vlavt~~~~~~~~~w~~~-~~~PiF~splcv---~~sv~i~~VdG~l~~f~-~ 206 (354)
T KOG4649|consen 133 -CGGGTFVSPVIAPGDGSLYAAITAGAVLAVTKNPYSSTEFWAAT-RFGPIFASPLCV---GSSVIITTVDGVLTSFD-E 206 (354)
T ss_pred -cCCceeccceecCCCceEEEEeccceEEEEccCCCCcceehhhh-cCCccccCceec---cceEEEEEeccEEEEEc-C
Confidence 3333344455666444566666677776665544421 11111 1122211 111 23455566677777666 5
Q ss_pred CCceeeecCCCCCCCCCCceeEE-EEEc-CCCCCeEEEEcCCCcEEEEecCCeEEEEeeCCcccCCcEEEEEEC------
Q 010362 379 STDCLQTFKPPPPLRGGDASVNS-VHLF-PKNPDHIVVCNKTSSIYIMTLQGQVVKSFSSGKREGGDFVAACVS------ 450 (512)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~i~~-~~~~-~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~s------ 450 (512)
.|+.+..+.... +|.. -+.+ |.. +.+..+..+..+..-...+..+.....+ ....+..+
T Consensus 207 sG~qvwr~~t~G-------pIf~~Pc~s~Ps~-q~i~~~~~~Cf~~~~p~~ghL~w~~~~g-----~t~~vy~~p~l~F~ 273 (354)
T KOG4649|consen 207 SGRQVWRPATKG-------PIFMEPCESRPSC-QQISLENENCFCAPLPIAGHLLWATQSG-----TTLHVYLSPKLRFD 273 (354)
T ss_pred CCcEEEeecCCC-------ceecccccCCCcc-eEEEEecCCeEEEeccccceEEEEecCC-----cEEEEEeCccccee
Confidence 555555433221 1111 0111 211 3444444443333333333322222211 01111112
Q ss_pred ---C---CCCEEEEEeCCCeEEEEEcCCCeeEEeccccCCCeEEEE---------EcC--CCCeEEEEECCCeEEEecC
Q 010362 451 ---P---KGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVT---------HHP--HRNLLATYGEDCTMKLWKP 512 (512)
Q Consensus 451 ---~---~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~---------~~p--~~~~l~s~~~dg~i~iW~~ 512 (512)
| ..+++..++.||++.|.-... .+.....|.+.+..+. -+| -+.+|+.|+.|..|+-||.
T Consensus 274 ~h~~~~S~~~ll~~~s~dgkv~il~~~~--sl~~~~s~~g~lq~~~~~el~~eIFsSPvii~grl~igcRDdYv~cldl 350 (354)
T KOG4649|consen 274 LHSPGISYPKLLRRSSGDGKVMILMTSK--SLAEISSNGGELQNLEAIELSNEIFSSPVIIDGRLLIGCRDDYVRCLDL 350 (354)
T ss_pred ccCCCCcchhhhhhhcCCCcEEEEEecc--cccccccCCCccceEEEeecCcccccCCeEEccEEEEEEccCeEEEEec
Confidence 2 245677888999988874332 2333333333322222 233 1245777889999999973
No 315
>PF08513 LisH: LisH; InterPro: IPR013720 The LisH motif is found in a large number of eukaryotic proteins, from metazoa, fungi and plants that have a wide range of functions. The recently solved structure of the LisH domain in the N-terminal region of LIS1 depicted it as a novel dimerization motif, and that other structural elements are likely to play an important role in dimerisation [, , ]. The LisH (lis homology) domain mediates protein dimerisation and tetramerisation. The LisH domain is found in Sif2, a component of the Set3 complex which is responsible for repressing meiotic genes. It has been shown that the LisH domain helps mediate interaction with components of the Set3 complex []. ; PDB: 2XTE_L 2XTC_B 2XTD_A 1UUJ_B.
Probab=98.81 E-value=6.9e-09 Score=55.40 Aligned_cols=27 Identities=15% Similarity=0.400 Sum_probs=24.9
Q ss_pred hhHHHHHHHHHHhcChHHHHHHHHhhc
Q 010362 8 RDVIKIVLQFCKENSLQQTFQTLQNEC 34 (512)
Q Consensus 8 ~e~~~li~q~L~e~G~~~t~~~l~~Es 34 (512)
+++++||++||.++||.+||.+|.+||
T Consensus 1 ~~Ln~lI~~YL~~~Gy~~tA~~f~~Ea 27 (27)
T PF08513_consen 1 EELNQLIYDYLVENGYKETAKAFAKEA 27 (27)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHCCcHHHHHHHHhcC
Confidence 589999999999999999999999997
No 316
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.80 E-value=2.3e-08 Score=88.89 Aligned_cols=87 Identities=26% Similarity=0.353 Sum_probs=77.2
Q ss_pred eeeccCcceeEEEEcCCCCeEEEEeCCCeEEEEEccCCeeeEEeccccccCeEEEEEecCCCEEEEEeCCCcEEEEeCCC
Q 010362 258 TFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKS 337 (512)
Q Consensus 258 ~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~i~d~~~ 337 (512)
...||-..++.++|+||+++++++..|..|++-....-..+..+-.+|+.-|..++..++. .|++|+.|+++++||+.+
T Consensus 146 ~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~~-~LlS~sGD~tlr~Wd~~s 224 (390)
T KOG3914|consen 146 PILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDNY-LLLSGSGDKTLRLWDITS 224 (390)
T ss_pred hhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccCc-eeeecCCCCcEEEEeccc
Confidence 3456999999999999999999999999999999887777788877899999999998654 589999999999999999
Q ss_pred CceeEEee
Q 010362 338 GKLLKEFR 345 (512)
Q Consensus 338 ~~~~~~~~ 345 (512)
|+.+.++.
T Consensus 225 gk~L~t~d 232 (390)
T KOG3914|consen 225 GKLLDTCD 232 (390)
T ss_pred CCcccccc
Confidence 99886654
No 317
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.77 E-value=3.7e-06 Score=81.50 Aligned_cols=263 Identities=11% Similarity=0.111 Sum_probs=155.1
Q ss_pred EEEEeCCCeEEEEEcCCCeeeccccccccceeec-----cCcce---------------e--EEEEc---CCCCeEEEEe
Q 010362 228 LVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMM-----HDETV---------------L--CIEFS---RDSEMLASGS 282 (512)
Q Consensus 228 l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~-----h~~~v---------------~--~l~~s---~~~~~l~s~~ 282 (512)
|.+|+..|.|+|+-+-+++.+..+.........| .+..| . .+++. .||++|..-.
T Consensus 69 f~SgG~sG~~~v~G~PSmr~l~~ipvf~~~~~~G~G~~~esk~~l~~~~~~~~~~~gD~HHp~~s~t~g~ydGr~~find 148 (635)
T PRK02888 69 FWSGGHSGEVRILGLPSMRELMRIPVFNRDSATGWGITNESKKVLGEGARGGKYLNGDTHHPHMSFTDGTYDGRYLFIND 148 (635)
T ss_pred EeeCCccceEEEEecCCcceEEEeeeecCCCCcccCCchhHHHHhhccccCCcccCCCcCCCcccccCCccceeEEEEec
Confidence 6678889999999888877666554322211111 00001 1 11111 1677777765
Q ss_pred C-CCeEEEEEccCCeeeEEeccccccCeEEEEEe--cCCCEEEEEe------------------CCCcEEEEeCCCCcee
Q 010362 283 Q-DGKIKVWRIRSGQCLRRLERAHSEGVTSLVFS--RDGSQILSTS------------------FDSTARIHGLKSGKLL 341 (512)
Q Consensus 283 ~-dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~l~~~~------------------~dg~v~i~d~~~~~~~ 341 (512)
. +..|-..+++..++-+.+..+....+..++|- |+..++++++ ..+.+.+.|.++.+..
T Consensus 149 k~n~Rvari~l~~~~~~~i~~iPn~~~~Hg~~~~~~p~t~yv~~~~e~~~PlpnDGk~l~~~~ey~~~vSvID~etmeV~ 228 (635)
T PRK02888 149 KANTRVARIRLDVMKCDKITELPNVQGIHGLRPQKIPRTGYVFCNGEFRIPLPNDGKDLDDPKKYRSLFTAVDAETMEVA 228 (635)
T ss_pred CCCcceEEEECccEeeceeEeCCCccCccccCccccCCccEEEeCcccccccCCCCCEeecccceeEEEEEEECccceEE
Confidence 4 45566666666555444443344444444443 3444444332 2355677787777666
Q ss_pred EEeeCCccceeEEEEcCCCCEEEEEe----------------------------------------CCCcEEEEeCCC--
Q 010362 342 KEFRGHSSYVNDAIFTNDGSRVVTAS----------------------------------------SDCTVKVWDLKS-- 379 (512)
Q Consensus 342 ~~~~~~~~~v~~~~~~~~~~~l~~~~----------------------------------------~dg~i~iwd~~~-- 379 (512)
.++.-.. ....+.++|+|+++++++ .++.|.+.|.++
T Consensus 229 ~qV~Vdg-npd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~iea~vkdGK~~~V~gn~V~VID~~t~~ 307 (635)
T PRK02888 229 WQVMVDG-NLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIARIEEAVKAGKFKTIGGSKVPVVDGRKAA 307 (635)
T ss_pred EEEEeCC-CcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHHHHHhhhCCCEEEECCCEEEEEECCccc
Confidence 6655332 345677888888887765 123466677665
Q ss_pred ---CceeeecCCCCCCCCCCceeEEEEEcCCCCCeEEEEcCCCcEEEEecCCeE-------------EEEeeCCcccCCc
Q 010362 380 ---TDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQV-------------VKSFSSGKREGGD 443 (512)
Q Consensus 380 ---~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~-------------~~~~~~~~~~~~~ 443 (512)
......+.. ......+.++|++...++++..+..+.+.|+.... ...... +..
T Consensus 308 ~~~~~v~~yIPV-------GKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevev----GlG 376 (635)
T PRK02888 308 NAGSALTRYVPV-------PKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPEL----GLG 376 (635)
T ss_pred cCCcceEEEEEC-------CCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeecc----CCC
Confidence 233333332 23567899999997778888889999999997422 122222 233
Q ss_pred EEEEEECCCCCEEEEEeCCCeEEEEEcCC----------CeeEEeccccCCCeE-----EEEEcCCCCeEEEEE
Q 010362 444 FVAACVSPKGEWIYCVGEDRNLYCFSHQS----------GKLEHLMKVHEKDVI-----GVTHHPHRNLLATYG 502 (512)
Q Consensus 444 ~~~~~~s~~g~~l~~g~~dg~i~iwd~~~----------~~~~~~~~~h~~~v~-----~v~~~p~~~~l~s~~ 502 (512)
....+|+++|+...+-.-|..|..|++.. ...+..+..|-.+-. +=.-.|+|++|++..
T Consensus 377 PLHTaFDg~G~aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pgh~~~~~g~t~~~dgk~l~~~n 450 (635)
T PRK02888 377 PLHTAFDGRGNAYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQPGHNHASMGETKEADGKWLVSLN 450 (635)
T ss_pred cceEEECCCCCEEEeEeecceeEEEehHHHHHHhccccCCcceecccCCCccceeeecCCCcCCCCCCEEEEcc
Confidence 45678899998777777899999999876 334444444433222 112356777777653
No 318
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.75 E-value=4.6e-08 Score=85.23 Aligned_cols=175 Identities=18% Similarity=0.252 Sum_probs=125.7
Q ss_pred EEecC--CCEEEEEeCCCcEEEEeCCCCceeEEeeCCccceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeecCCCC
Q 010362 313 VFSRD--GSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPP 390 (512)
Q Consensus 313 ~~~~~--~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 390 (512)
+|+-+ +-. ++.+.+..|-+-|+++|... .|. ..+.|.++.|...++.++.|+.+|.|..+|++.+..-.... .
T Consensus 218 awSlni~gyh-fs~G~sqqv~L~nvetg~~q-sf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~--a 292 (425)
T KOG2695|consen 218 AWSLNIMGYH-FSVGLSQQVLLTNVETGHQQ-SFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWC--A 292 (425)
T ss_pred hhhhccceee-ecccccceeEEEEeeccccc-ccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcc--e
Confidence 55532 333 45555778889998877443 333 55679999999989999999999999999999763211111 1
Q ss_pred CCCCCCceeEEEEEcCCCCCeEEEEcCCCcEEEEecCC----eEEEEeeCCcccCCcEEEEEECCCCCEEEEEeCCCeEE
Q 010362 391 PLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQG----QVVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLY 466 (512)
Q Consensus 391 ~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~~~~~~----~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~dg~i~ 466 (512)
...-|+..++++.........+++.+.+|.|.+||.+. ..+..+..+. ......-+-+.+....|++++.|...+
T Consensus 293 ~rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHv-N~~a~l~~~v~~eeg~I~s~GdDcytR 371 (425)
T KOG2695|consen 293 QRLYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHV-NLSAYLPAHVKEEEGSIFSVGDDCYTR 371 (425)
T ss_pred EEEEcCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeeccc-ccccccccccccccceEEEccCeeEEE
Confidence 11236778899888876678999999999999999982 2355554443 233444556678888999999999999
Q ss_pred EEEcCCCeeEEeccccC----CCeEEEEEcC
Q 010362 467 CFSHQSGKLEHLMKVHE----KDVIGVTHHP 493 (512)
Q Consensus 467 iwd~~~~~~~~~~~~h~----~~v~~v~~~p 493 (512)
||.+++|.++.+++... ..+.+++|..
T Consensus 372 iWsl~~ghLl~tipf~~s~~e~d~~sv~~~s 402 (425)
T KOG2695|consen 372 IWSLDSGHLLCTIPFPYSASEVDIPSVAFDS 402 (425)
T ss_pred EEecccCceeeccCCCCccccccccceehhc
Confidence 99999999999887543 2455666643
No 319
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.75 E-value=1.1e-05 Score=77.71 Aligned_cols=207 Identities=15% Similarity=0.225 Sum_probs=129.8
Q ss_pred CceEEEEECCCCCEEEEEeCCCeEEEEEcCCCeeeccccccccceeeccCcceeEEEEcCCCCeEEEEeCCCeEEEEEcc
Q 010362 214 SHAECARFSPDGQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWRIR 293 (512)
Q Consensus 214 ~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~vwd~~ 293 (512)
..|.--+++..+++++.|+.-|.+++|+-..+.... ++ ..+..+.+..+..+++..++|.|+..|.|.++-+.
T Consensus 34 ~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~-~~------~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~ 106 (726)
T KOG3621|consen 34 ARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRK-LK------NEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLN 106 (726)
T ss_pred ceEEEEEeecCCceEEEecccceEEEEecCchhhhc-cc------ccCccceEEEEEecchhHhhhhhcCCceEEeehhh
Confidence 345555667789999999999999999976665432 11 11244556777788889999999999999999887
Q ss_pred CCe-----eeEEeccccccCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCc----eeEEeeCCccceeEEEEcCCCCEEE
Q 010362 294 SGQ-----CLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGK----LLKEFRGHSSYVNDAIFTNDGSRVV 364 (512)
Q Consensus 294 ~~~-----~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~----~~~~~~~~~~~v~~~~~~~~~~~l~ 364 (512)
.+. .+......|...|++++|++|+..+++|...|.|..-.+.+.. ....+....+.|..+.+.. +..|+
T Consensus 107 ~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~q-~~LLV 185 (726)
T KOG3621|consen 107 KELPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYLQ-SYLLV 185 (726)
T ss_pred ccCCCcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeeccc-ceehH
Confidence 643 2333344578899999999999999999999999988876621 1222333456676666543 33333
Q ss_pred EEeCCCcEEEEeCCCCceeeecCCCCCCCCCCceeEEEEEcCC----CCCeEEEEcCCCcEEEEecCCeEEEEe
Q 010362 365 TASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPK----NPDHIVVCNKTSSIYIMTLQGQVVKSF 434 (512)
Q Consensus 365 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~----~~~~l~~~~~~~~i~~~~~~~~~~~~~ 434 (512)
+.. -. ..+++++.....+.-+.+. ....-...+|.|. .+..++++--.++++.-|+.|...++.
T Consensus 186 Stl-~r-~~Lc~tE~eti~QIG~k~R----~~~~~~GACF~~g~~~~q~~~IycaRPG~RlWead~~G~V~~Th 253 (726)
T KOG3621|consen 186 STL-TR-CILCQTEAETITQIGKKPR----KSLIDFGACFFPGQCKAQKPQIYCARPGLRLWEADFAGEVIKTH 253 (726)
T ss_pred hhh-hh-hheeecchhHHHHhcCCCc----CCccccceEEeeccccCCCceEEEecCCCceEEeecceeEEEee
Confidence 333 22 3455555433211111111 1111234455554 445566666666666666667765543
No 320
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.75 E-value=3.2e-07 Score=89.28 Aligned_cols=111 Identities=13% Similarity=0.214 Sum_probs=91.0
Q ss_pred ceeEEEEcCCCCeEEEEeC----CCeEEEEEccCCeeeEEeccccccCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCce
Q 010362 265 TVLCIEFSRDSEMLASGSQ----DGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKL 340 (512)
Q Consensus 265 ~v~~l~~s~~~~~l~s~~~----dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~ 340 (512)
.-+-..|+|...++++++. .|+|.||- ++|++..... .+-.+++++|+|..-.|+.|-.-|.+.+|...+.+.
T Consensus 17 vsti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt--~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~ 93 (1416)
T KOG3617|consen 17 VSTISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVT--YPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTET 93 (1416)
T ss_pred cccccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCcccc--cceehhhhccChHHHHHhhccccceeEEEecCCcee
Confidence 3445679999999988864 58899885 7787655443 344577899999988888888889999999877766
Q ss_pred eEEeeCCccceeEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 010362 341 LKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLK 378 (512)
Q Consensus 341 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 378 (512)
......|+.+|..+.|+++|..++++..-|.+.+|...
T Consensus 94 htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 94 HTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred eeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 66666799999999999999999999999999999765
No 321
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.74 E-value=5.1e-06 Score=72.66 Aligned_cols=206 Identities=15% Similarity=0.218 Sum_probs=123.0
Q ss_pred ccCcceeEEEEcCCCC-eEEEEeCCCeEEEEEccCCeeeEEeccccccCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCc
Q 010362 261 MHDETVLCIEFSRDSE-MLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGK 339 (512)
Q Consensus 261 ~h~~~v~~l~~s~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~ 339 (512)
+-...+..++|+|+.+ ++++....+.|..++. +|+.++++.....+....+++..++.++++.-.++.+.++++....
T Consensus 19 g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~ 97 (248)
T PF06977_consen 19 GILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTIDDDT 97 (248)
T ss_dssp T--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE----
T ss_pred CccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEeccc
Confidence 3455699999999755 6666677788888886 5888888865555778999998777666665568889998884321
Q ss_pred ----e--eEEee-----CCccceeEEEEcCCCCEEEEEeCCCcEEEEeCCC---CceeeecCC--CCCCCCCCceeEEEE
Q 010362 340 ----L--LKEFR-----GHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKS---TDCLQTFKP--PPPLRGGDASVNSVH 403 (512)
Q Consensus 340 ----~--~~~~~-----~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~---~~~~~~~~~--~~~~~~~~~~i~~~~ 403 (512)
. ...+. .++..+-.++|+|.++.|+.+-...-..+|.+.. ......... ..........+.++.
T Consensus 98 ~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~ 177 (248)
T PF06977_consen 98 TSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLS 177 (248)
T ss_dssp TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEE
T ss_pred cccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccceE
Confidence 1 11221 2455689999999988888887777777777654 111111000 000112234578899
Q ss_pred EcCCCCCeEEEEcCCCcEEEEecCCeEEEEeeCCcc------cCCcEEEEEECCCCCEEEEEeCCCeEEEE
Q 010362 404 LFPKNPDHIVVCNKTSSIYIMTLQGQVVKSFSSGKR------EGGDFVAACVSPKGEWIYCVGEDRNLYCF 468 (512)
Q Consensus 404 ~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~------~~~~~~~~~~s~~g~~l~~g~~dg~i~iw 468 (512)
++|....+++.+..+..+..+|..|+.+..+.-... .-...-.+++.++|+ |+..++-+..++|
T Consensus 178 ~~p~t~~lliLS~es~~l~~~d~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~-LYIvsEpNlfy~f 247 (248)
T PF06977_consen 178 YDPRTGHLLILSDESRLLLELDRQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGN-LYIVSEPNLFYRF 247 (248)
T ss_dssp EETTTTEEEEEETTTTEEEEE-TT--EEEEEE-STTGGG-SS---SEEEEEE-TT---EEEEETTTEEEEE
T ss_pred EcCCCCeEEEEECCCCeEEEECCCCCEEEEEEeCCcccCcccccCCccEEEECCCCC-EEEEcCCceEEEe
Confidence 999998999999999999999988887766554431 123467899999996 4455566666655
No 322
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.74 E-value=1.7e-05 Score=78.29 Aligned_cols=273 Identities=13% Similarity=0.155 Sum_probs=157.9
Q ss_pred CCEEEEEeCCCeEEEEEcCCCeeeccccccccceeeccCccee--EEEEcCCCCeEEEEeCCCeEEEEEccCCeeeEEec
Q 010362 225 GQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHDETVL--CIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLE 302 (512)
Q Consensus 225 ~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~--~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~ 302 (512)
+..++.++.++.|.-.|..+|+............ .....+. .++.. ++..++.++.+|.|.-+|.++|+.+.++.
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~--~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~~~W~~~ 137 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPAD--RGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGKQVWKFG 137 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCChhhceeCCCCCcc--ccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCCEeeeec
Confidence 4467777788999999999998776554321100 0000110 11111 22577888889999999999999988876
Q ss_pred ccccc-C---e-EEEEEecCCCEEEEEe---------CCCcEEEEeCCCCceeEEeeCCccc------------------
Q 010362 303 RAHSE-G---V-TSLVFSRDGSQILSTS---------FDSTARIHGLKSGKLLKEFRGHSSY------------------ 350 (512)
Q Consensus 303 ~~~~~-~---i-~~~~~~~~~~~l~~~~---------~dg~v~i~d~~~~~~~~~~~~~~~~------------------ 350 (512)
..... . + .+..+. +..++.++ .+|.+..+|..+|+.+..+......
T Consensus 138 ~~~~~~~~~~i~ssP~v~--~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g 215 (488)
T cd00216 138 NNDQVPPGYTMTGAPTIV--KKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGG 215 (488)
T ss_pred CCCCcCcceEecCCCEEE--CCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCC
Confidence 32210 0 1 111222 24555554 3678999999999988877542110
Q ss_pred --e-eEEEEcCCCCEEEEEeCCC------------------cEEEEeCCCCceeeecCCCCC-C---CCCCce-eEEEE-
Q 010362 351 --V-NDAIFTNDGSRVVTASSDC------------------TVKVWDLKSTDCLQTFKPPPP-L---RGGDAS-VNSVH- 403 (512)
Q Consensus 351 --v-~~~~~~~~~~~l~~~~~dg------------------~i~iwd~~~~~~~~~~~~~~~-~---~~~~~~-i~~~~- 403 (512)
+ .+.++.+.+..++.++.++ .|.-+|..+++....+..... . .....+ +..+.
T Consensus 216 ~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~ 295 (488)
T cd00216 216 GTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKP 295 (488)
T ss_pred CCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccc
Confidence 1 1234455566777777665 699999999998887653221 0 111111 11111
Q ss_pred EcCCCCCeEEEEcCCCcEEEEecC-CeEEEEeeCCcccCCcEEEEEECCCCCEEEEE------------------eCCCe
Q 010362 404 LFPKNPDHIVVCNKTSSIYIMTLQ-GQVVKSFSSGKREGGDFVAACVSPKGEWIYCV------------------GEDRN 464 (512)
Q Consensus 404 ~~~~~~~~l~~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g------------------~~dg~ 464 (512)
........+++++.+|.++..|.. |+.+-...... ..+..+| ..++.+ ..+|.
T Consensus 296 ~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~~------~~~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G~ 367 (488)
T cd00216 296 KDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEVE------QPMAYDP--GLVYLGAFHIPLGLPPQKKKRCKKPGKGG 367 (488)
T ss_pred cCCCeeEEEEEECCCceEEEEECCCCcEeeEeEeec------cccccCC--ceEEEccccccccCcccccCCCCCCCceE
Confidence 111111367888899999999987 55444432210 1122333 233332 24678
Q ss_pred EEEEEcCCCeeEEeccccC--------CCeE--EEEEcCCCCeEEEEECCCeEEEecC
Q 010362 465 LYCFSHQSGKLEHLMKVHE--------KDVI--GVTHHPHRNLLATYGEDCTMKLWKP 512 (512)
Q Consensus 465 i~iwd~~~~~~~~~~~~h~--------~~v~--~v~~~p~~~~l~s~~~dg~i~iW~~ 512 (512)
+.-.|..+|+.+-...... .+.. .+.. .+..++.++.||.|+.+|+
T Consensus 368 l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~--~g~~v~~g~~dG~l~ald~ 423 (488)
T cd00216 368 LAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLAT--AGNLVFAGAADGYFRAFDA 423 (488)
T ss_pred EEEEeCCCCcEeeEeeCCccccccccCCcccCcceEe--cCCeEEEECCCCeEEEEEC
Confidence 8899999998776554321 1111 1222 4567888889999988764
No 323
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.73 E-value=1.1e-07 Score=85.76 Aligned_cols=210 Identities=18% Similarity=0.219 Sum_probs=147.6
Q ss_pred cCcceeEEEEcCCCCeEEEEeCCCeEEEEEccC--Ce-eeEEeccccccCeEEEEEecCCCEEEEEeC-CCcEEEEeCCC
Q 010362 262 HDETVLCIEFSRDSEMLASGSQDGKIKVWRIRS--GQ-CLRRLERAHSEGVTSLVFSRDGSQILSTSF-DSTARIHGLKS 337 (512)
Q Consensus 262 h~~~v~~l~~s~~~~~l~s~~~dg~i~vwd~~~--~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~v~i~d~~~ 337 (512)
|...|+.+.-. -.+++.+++.||.++.|.-.. |. .+..+ ..|-..|.+++.+-++..+.+.+. |..++++|+.+
T Consensus 8 hrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGvEfVKhF-raHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn 85 (558)
T KOG0882|consen 8 HRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGVEFVKHF-RAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVEN 85 (558)
T ss_pred ccceeeeEeee-hhheEEeeecchhhhhcCCCCccceeehhhh-HHHHHHHHhhhccccceeEeeccCcccceeEEEeec
Confidence 77778777654 457999999999999997543 22 23333 378889999999999999999777 99999999987
Q ss_pred CceeEEeeCCccceeEEEEc-CCC--C-EE-EEEeCCCcEEEEeCCCCceeeecCCCCCCCCCCceeEEEEEcCCCCCeE
Q 010362 338 GKLLKEFRGHSSYVNDAIFT-NDG--S-RV-VTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHI 412 (512)
Q Consensus 338 ~~~~~~~~~~~~~v~~~~~~-~~~--~-~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l 412 (512)
-..+.-++...- ...+.|. ..| . .+ ++.-.+|.+.++|-....+...+. ..-|..+|..+.+.|.+ +.+
T Consensus 86 ~DminmiKL~~l-Pg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~f----kklH~sPV~~i~y~qa~-Ds~ 159 (558)
T KOG0882|consen 86 FDMINMIKLVDL-PGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYF----KKLHFSPVKKIRYNQAG-DSA 159 (558)
T ss_pred cchhhhcccccC-CCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCcccee----cccccCceEEEEeeccc-cce
Confidence 766544432211 1122222 222 1 23 333457899999987654332222 12467899999999988 888
Q ss_pred EEEcCCCcEEEEecCCeEE-------------EEeeCCcccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCeeEEec
Q 010362 413 VVCNKTSSIYIMTLQGQVV-------------KSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLM 479 (512)
Q Consensus 413 ~~~~~~~~i~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~ 479 (512)
++....|.|.-|...+... .-+...........++.++|+|..+.+-+.|..|++++.++|++++.+
T Consensus 160 vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqei 239 (558)
T KOG0882|consen 160 VSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEI 239 (558)
T ss_pred eeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhh
Confidence 8999999999999885110 011122223456779999999999999999999999999998866543
No 324
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.72 E-value=1.5e-06 Score=85.17 Aligned_cols=196 Identities=12% Similarity=0.135 Sum_probs=133.2
Q ss_pred EEecCCCEEEEEeCCCcEEEEeCCCCceeEEeeCCccc-eeEEEEcCCCCEEEEEeCCCc-----EEEEeCCCCc-----
Q 010362 313 VFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSY-VNDAIFTNDGSRVVTASSDCT-----VKVWDLKSTD----- 381 (512)
Q Consensus 313 ~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~~~~~dg~-----i~iwd~~~~~----- 381 (512)
+|++++..++.|+.+|.|.+++- +-+.+..++.+... |..+....+.++|++.+.|+. ++|||+....
T Consensus 30 c~~s~~~~vvigt~~G~V~~Ln~-s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP 108 (933)
T KOG2114|consen 30 CCSSSTGSVVIGTADGRVVILNS-SFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSP 108 (933)
T ss_pred EEcCCCceEEEeeccccEEEecc-cceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCc
Confidence 46678889999999999999873 45556788887766 555544445578888777654 8999987532
Q ss_pred -eeeecCC-CCCCCCCCceeEEEEEcCCCCCeEEEEcCCCcEEEEecC---CeEEEEeeCCcccCCcEEEEEECCCCCEE
Q 010362 382 -CLQTFKP-PPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQ---GQVVKSFSSGKREGGDFVAACVSPKGEWI 456 (512)
Q Consensus 382 -~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~~~~~---~~~~~~~~~~~~~~~~~~~~~~s~~g~~l 456 (512)
+...... +........++.+++++.+- ..+++|-.+|.|..+.-+ .+.. ..........+|+.+++..++..+
T Consensus 109 ~c~~~~ri~~~~np~~~~p~s~l~Vs~~l-~~Iv~Gf~nG~V~~~~GDi~RDrgs-r~~~~~~~~~pITgL~~~~d~~s~ 186 (933)
T KOG2114|consen 109 QCLYEHRIFTIKNPTNPSPASSLAVSEDL-KTIVCGFTNGLVICYKGDILRDRGS-RQDYSHRGKEPITGLALRSDGKSV 186 (933)
T ss_pred ceeeeeeeeccCCCCCCCcceEEEEEccc-cEEEEEecCcEEEEEcCcchhcccc-ceeeeccCCCCceeeEEecCCcee
Confidence 2211111 11112346678888888774 889999999999988643 2222 222333356789999998888875
Q ss_pred EEEeCCCeEEEEEcCCCee-EEeccccCCCeEEEEEcCCCCeEEEEECCCeEEEecC
Q 010362 457 YCVGEDRNLYCFSHQSGKL-EHLMKVHEKDVIGVTHHPHRNLLATYGEDCTMKLWKP 512 (512)
Q Consensus 457 ~~g~~dg~i~iwd~~~~~~-~~~~~~h~~~v~~v~~~p~~~~l~s~~~dg~i~iW~~ 512 (512)
+.......|.+|.+....+ ...+..|..+++|..+++....+++++ +..+.+|++
T Consensus 187 lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~-~e~l~fY~s 242 (933)
T KOG2114|consen 187 LFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAG-SEFLYFYDS 242 (933)
T ss_pred EEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEec-CceEEEEcC
Confidence 5555567888999884443 455777888999999998666455444 335777764
No 325
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.70 E-value=5.8e-08 Score=58.54 Aligned_cols=39 Identities=46% Similarity=0.855 Sum_probs=36.6
Q ss_pred CceeEEeeCCccceeEEEEcCCCCEEEEEeCCCcEEEEe
Q 010362 338 GKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWD 376 (512)
Q Consensus 338 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd 376 (512)
++++.++.+|.+.|++++|+|++.+|++++.|+.|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 357889999999999999999999999999999999997
No 326
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.68 E-value=3.2e-06 Score=82.87 Aligned_cols=208 Identities=15% Similarity=0.180 Sum_probs=134.5
Q ss_pred EEcCCCCeEEEEeCCCeEEEEEccCCeeeEEeccccccC-eEEEEEecCCCEEEEEeCCC-----cEEEEeCCCC-----
Q 010362 270 EFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEG-VTSLVFSRDGSQILSTSFDS-----TARIHGLKSG----- 338 (512)
Q Consensus 270 ~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~l~~~~~dg-----~v~i~d~~~~----- 338 (512)
+|++.+..++.|+.+|.|.+.+ ..-+.+..+. .+... |..+....+..+|++.+.|+ .+++|+++.-
T Consensus 30 c~~s~~~~vvigt~~G~V~~Ln-~s~~~~~~fq-a~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~s 107 (933)
T KOG2114|consen 30 CCSSSTGSVVIGTADGRVVILN-SSFQLIRGFQ-AYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNS 107 (933)
T ss_pred EEcCCCceEEEeeccccEEEec-ccceeeehhe-ecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCC
Confidence 4678888999999999888887 3344445665 45555 44443333446777777664 4899998632
Q ss_pred -ceeE--EeeC-----CccceeEEEEcCCCCEEEEEeCCCcEEEEeCCC--CceeeecCCCCCCCCCCceeEEEEEcCCC
Q 010362 339 -KLLK--EFRG-----HSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKS--TDCLQTFKPPPPLRGGDASVNSVHLFPKN 408 (512)
Q Consensus 339 -~~~~--~~~~-----~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~--~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 408 (512)
.++. .+.. ...++.+++.+.+-+.+|+|-.+|.|..+.-.- .+..+.. -......+|+++.+..++
T Consensus 108 P~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~----~~~~~~~pITgL~~~~d~ 183 (933)
T KOG2114|consen 108 PQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQD----YSHRGKEPITGLALRSDG 183 (933)
T ss_pred cceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhcccccee----eeccCCCCceeeEEecCC
Confidence 2331 1222 245788999999989999999999999884221 1111110 011346799999998887
Q ss_pred CCeEEEEcCCCcEEEEecCCeEEEEeeCCcccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCeeEEecc-ccCCCe
Q 010362 409 PDHIVVCNKTSSIYIMTLQGQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMK-VHEKDV 486 (512)
Q Consensus 409 ~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~~-~h~~~v 486 (512)
... +.......|.+|.+.++. ........++....|..+++...-+++++ +..+++|+.....+-..+. +|....
T Consensus 184 ~s~-lFv~Tt~~V~~y~l~gr~-p~~~~ld~~G~~lnCss~~~~t~qfIca~-~e~l~fY~sd~~~~cfaf~~g~kk~~ 259 (933)
T KOG2114|consen 184 KSV-LFVATTEQVMLYSLSGRT-PSLKVLDNNGISLNCSSFSDGTYQFICAG-SEFLYFYDSDGRGPCFAFEVGEKKEM 259 (933)
T ss_pred cee-EEEEecceeEEEEecCCC-cceeeeccCCccceeeecCCCCccEEEec-CceEEEEcCCCcceeeeecCCCeEEE
Confidence 554 344445678888888776 33443445677788888877665344433 3578999988766666666 555443
No 327
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.68 E-value=2.4e-08 Score=94.08 Aligned_cols=203 Identities=16% Similarity=0.240 Sum_probs=136.0
Q ss_pred CceEEEEECCCC--CEEEEEeCCCeEEEEEcCCCeeeccccccccceeeccCcceeEEEEcC-CCCeEEEEe----CCCe
Q 010362 214 SHAECARFSPDG--QFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSR-DSEMLASGS----QDGK 286 (512)
Q Consensus 214 ~~v~~~~~s~~~--~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~-~~~~l~s~~----~dg~ 286 (512)
..+.|++++-+. ..+++|..+|.|.+-.+...... ......+|....++++|++ |.+.||.|- .|..
T Consensus 57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdS------s~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~ 130 (783)
T KOG1008|consen 57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDS------SAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSS 130 (783)
T ss_pred CCceeehhhcCCchhhhhhccccCceEEeecCCcccc------cceecccccccccccccccccHHHHHhhhhhhcccCC
Confidence 346777766543 47889999999999887554322 1223345888999999999 566777763 3568
Q ss_pred EEEEEccCC--ee--eEEeccccccCeEEEEEecCCCEEEEEeCCCcEEEEeCCCC-ceeEEeeCCccceeEEEEcC-CC
Q 010362 287 IKVWRIRSG--QC--LRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSG-KLLKEFRGHSSYVNDAIFTN-DG 360 (512)
Q Consensus 287 i~vwd~~~~--~~--~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~i~d~~~~-~~~~~~~~~~~~v~~~~~~~-~~ 360 (512)
+.|||+.++ .+ ...+..+......+++|..+.+.+.+|.....+.++|++.. .....+ .+..+..+...| .+
T Consensus 131 ~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~sv--nTk~vqG~tVdp~~~ 208 (783)
T KOG1008|consen 131 LKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSV--NTKYVQGITVDPFSP 208 (783)
T ss_pred ccceecccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhh--hhhhcccceecCCCC
Confidence 999999877 22 12222223445668999989999999998889999998732 222222 223456677788 66
Q ss_pred CEEEEEeCCCcEEEEe-CCCCc-eeeecCCCCCCCCCCceeEEEEEcCCCCCeEEEEcCC-CcEEEEecC
Q 010362 361 SRVVTASSDCTVKVWD-LKSTD-CLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKT-SSIYIMTLQ 427 (512)
Q Consensus 361 ~~l~~~~~dg~i~iwd-~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~-~~i~~~~~~ 427 (512)
+++++-. ||.|.+|| .+.-+ ....+.... ......+..++|+|.....+++...+ +.|+.+++.
T Consensus 209 nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~--N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 209 NYFCSNS-DGDIAIWDTYRNIENPLQIILRNE--NKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC 275 (783)
T ss_pred Cceeccc-cCceeeccchhhhccHHHHHhhCC--CCcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence 7776655 99999999 33322 222222111 11233689999999988888777765 679999986
No 328
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.68 E-value=2.9e-05 Score=69.75 Aligned_cols=261 Identities=13% Similarity=0.170 Sum_probs=159.5
Q ss_pred CeEEEEEcCCCeeeccccccccceeeccCcceeEEEEcCCCCeEEEEe----------CCCeEEEEEccCCeeeEEeccc
Q 010362 235 GFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGS----------QDGKIKVWRIRSGQCLRRLERA 304 (512)
Q Consensus 235 g~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~----------~dg~i~vwd~~~~~~~~~~~~~ 304 (512)
+.+.|+|.++++.+..+.. +-.-.+..+|+++.+++++ ..-.|.+||..+-.....+..+
T Consensus 17 ~rv~viD~d~~k~lGmi~~----------g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP 86 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMIDT----------GFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIP 86 (342)
T ss_dssp EEEEEEETTTTEEEEEEEE----------ESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEET
T ss_pred ceEEEEECCCCcEEEEeec----------ccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecC
Confidence 4799999988887654432 2334467899999888754 2346999999998877765433
Q ss_pred cc------cCeEEEEEecCCCEEEEEeC--CCcEEEEeCCCCceeEEeeCCccceeEEEEcCCCCEEEEEeCCCcEEEEe
Q 010362 305 HS------EGVTSLVFSRDGSQILSTSF--DSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWD 376 (512)
Q Consensus 305 ~~------~~i~~~~~~~~~~~l~~~~~--dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd 376 (512)
.. .....+.++.|++++++... -..|.+.|+..++.+.++.... +..+--++ ...+.+-|.||.+.-..
T Consensus 87 ~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PG--C~~iyP~~-~~~F~~lC~DGsl~~v~ 163 (342)
T PF06433_consen 87 PKPRAQVVPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPG--CWLIYPSG-NRGFSMLCGDGSLLTVT 163 (342)
T ss_dssp TS-B--BS--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTS--EEEEEEEE-TTEEEEEETTSCEEEEE
T ss_pred CcchheecccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCC--EEEEEecC-CCceEEEecCCceEEEE
Confidence 22 12234678889998887644 4579999999888888776322 22222222 24588889999999888
Q ss_pred CC-CCceeeecCCCCCCCCCCcee-EEEEEcCCCCCeEEEEcCCCcEEEEecCCeEE---EEeeCCc---c----cCCcE
Q 010362 377 LK-STDCLQTFKPPPPLRGGDASV-NSVHLFPKNPDHIVVCNKTSSIYIMTLQGQVV---KSFSSGK---R----EGGDF 444 (512)
Q Consensus 377 ~~-~~~~~~~~~~~~~~~~~~~~i-~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~---~~~~~~~---~----~~~~~ 444 (512)
+. .|+....... .......++ ..-.+...+ ..++..+.+|.++-.|+.+... ..+.... . ..+..
T Consensus 164 Ld~~Gk~~~~~t~--~F~~~~dp~f~~~~~~~~~-~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~ 240 (342)
T PF06433_consen 164 LDADGKEAQKSTK--VFDPDDDPLFEHPAYSRDG-GRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGW 240 (342)
T ss_dssp ETSTSSEEEEEEE--ESSTTTS-B-S--EEETTT-TEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SS
T ss_pred ECCCCCEeEeecc--ccCCCCcccccccceECCC-CeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcce
Confidence 87 4554322111 111111222 122222222 5566688889999988885432 2222111 0 01223
Q ss_pred EEEEECCCCCEEEEEeC---CC-------eEEEEEcCCCeeEEeccccCCCeEEEEEcCCCC-eEEEEE-CCCeEEEecC
Q 010362 445 VAACVSPKGEWIYCVGE---DR-------NLYCFSHQSGKLEHLMKVHEKDVIGVTHHPHRN-LLATYG-EDCTMKLWKP 512 (512)
Q Consensus 445 ~~~~~s~~g~~l~~g~~---dg-------~i~iwd~~~~~~~~~~~~h~~~v~~v~~~p~~~-~l~s~~-~dg~i~iW~~ 512 (512)
.-+++++..+.|++--. +| .|.++|+.+++.+..+.. ..++.+|+.+.+.. +|++.+ .++.+.+||+
T Consensus 241 Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~ 319 (342)
T PF06433_consen 241 QLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDA 319 (342)
T ss_dssp S-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEET
T ss_pred eeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEeC
Confidence 35677766655554321 22 488899999999998874 34577999998654 666554 5899999986
No 329
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=98.65 E-value=0.00011 Score=69.92 Aligned_cols=265 Identities=13% Similarity=0.168 Sum_probs=174.9
Q ss_pred ceEEEEECCCCCEEEEEe-CCCeEEEEEcCCCeeeccccccccceeeccCcceeEEEEcCCCCeE-EEEeCCCeEEEEEc
Q 010362 215 HAECARFSPDGQFLVSCS-FDGFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEML-ASGSQDGKIKVWRI 292 (512)
Q Consensus 215 ~v~~~~~s~~~~~l~sg~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l-~s~~~dg~i~vwd~ 292 (512)
....+...|++..+.... ....+...+........... .....-..++.++.+..+ ++...++.|.+.|.
T Consensus 32 ~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~~~--------~g~~~p~~i~v~~~~~~vyv~~~~~~~v~vid~ 103 (381)
T COG3391 32 GPGGVAVNPDGTQVYVANSGSNDVSVIDATSNTVTQSLS--------VGGVYPAGVAVNPAGNKVYVTTGDSNTVSVIDT 103 (381)
T ss_pred CCceeEEcCccCEEEEEeecCceeeecccccceeeeecc--------CCCccccceeeCCCCCeEEEecCCCCeEEEEcC
Confidence 455677888885544443 22245444443211111111 011445678888888744 44445689999998
Q ss_pred cCCeeeEEeccccccCeEEEEEecCCCEEEEEeC---CCcEEEEeCCCCceeEEeeCCccceeEEEEcCCCCEEEEEe-C
Q 010362 293 RSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSF---DSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTAS-S 368 (512)
Q Consensus 293 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~ 368 (512)
.+.........+. ....++++|+++.+.++.. ++++.+.|..+.+...+...-..+ ..++++|+|+.++.+. .
T Consensus 104 ~~~~~~~~~~vG~--~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~ 180 (381)
T COG3391 104 ATNTVLGSIPVGL--GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVAVDPDGNKVYVTNSD 180 (381)
T ss_pred cccceeeEeeecc--CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceEEECCCCCeEEEEecC
Confidence 8888777765333 6788999999988887765 689999999888888876544444 8899999999766655 7
Q ss_pred CCcEEEEeCCCCceeeecCCCCCCCCCCceeEEEEEcCCCCCeEEEEcCC--CcEEEEecCCeEEEEeeCCcccCCcEEE
Q 010362 369 DCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKT--SSIYIMTLQGQVVKSFSSGKREGGDFVA 446 (512)
Q Consensus 369 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~--~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (512)
++.|.+.|........ ...............+.+.|++....+....+ +.+...|................ ....
T Consensus 181 ~~~v~vi~~~~~~v~~--~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~-~~~~ 257 (381)
T COG3391 181 DNTVSVIDTSGNSVVR--GSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSG-APRG 257 (381)
T ss_pred CCeEEEEeCCCcceec--cccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccC-CCCc
Confidence 8899999977655443 22111223344556788999986666666666 68888888865555442222222 4567
Q ss_pred EEECCCCCEEEEEe-CCCeEEEEEcCCCeeEEeccccC---CCeEEEEEcC
Q 010362 447 ACVSPKGEWIYCVG-EDRNLYCFSHQSGKLEHLMKVHE---KDVIGVTHHP 493 (512)
Q Consensus 447 ~~~s~~g~~l~~g~-~dg~i~iwd~~~~~~~~~~~~h~---~~v~~v~~~p 493 (512)
+..+|+|.++++.. ..+.+.+.|..+........... ..+..+++.+
T Consensus 258 v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~~~~~~~~~~~~~~~~~ 308 (381)
T COG3391 258 VAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGPTGNEALGEPVSIAISP 308 (381)
T ss_pred eeECCCCCEEEEEecCCCeEEEEeCCCCceeeeecccccccccceecccee
Confidence 88999999999885 44899999998887776654332 2355555555
No 330
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.65 E-value=5.2e-07 Score=87.51 Aligned_cols=179 Identities=13% Similarity=0.146 Sum_probs=126.2
Q ss_pred ccCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeeCCccceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeee
Q 010362 306 SEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQT 385 (512)
Q Consensus 306 ~~~i~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 385 (512)
...++|++++ ++.|+.|+.+|.|++++.. +.+ .+...|... ..+|.++++++.||+|.|..+-+.+...+
T Consensus 39 ~D~is~~av~--~~~~~~GtH~g~v~~~~~~-~~~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~ 108 (846)
T KOG2066|consen 39 NDAISCCAVH--DKFFALGTHRGAVYLTTCQ-GNP-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQ 108 (846)
T ss_pred hhHHHHHHhh--cceeeeccccceEEEEecC-Ccc-ccccccccc------ccCCceEEEecCCCcEEEeeccCCcccee
Confidence 3557777776 6789999999999999874 444 444445443 66899999999999999998888766555
Q ss_pred cCCCCCCCCCCceeEEEEEcCC----CCCeEEEEcCCCcEEEEecC--CeEEEEeeCCcccCCcEEEEEECCCCCEEEEE
Q 010362 386 FKPPPPLRGGDASVNSVHLFPK----NPDHIVVCNKTSSIYIMTLQ--GQVVKSFSSGKREGGDFVAACVSPKGEWIYCV 459 (512)
Q Consensus 386 ~~~~~~~~~~~~~i~~~~~~~~----~~~~l~~~~~~~~i~~~~~~--~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g 459 (512)
+. -..++.+++++|+ ....+++|+..| +.++.-+ +..... ......++|.+++| .|++||-+
T Consensus 109 ~d-------f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v--~l~~~eG~I~~i~W--~g~lIAWa 176 (846)
T KOG2066|consen 109 YD-------FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSV--VLSEGEGPIHSIKW--RGNLIAWA 176 (846)
T ss_pred Ee-------cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccce--eeecCccceEEEEe--cCcEEEEe
Confidence 44 2357889999998 346789999888 7777655 222222 22334678888888 47788888
Q ss_pred eCCCeEEEEEcCCCeeEEeccccCCC------eEEEEEcCCCCeEEEEECCCeEEE
Q 010362 460 GEDRNLYCFSHQSGKLEHLMKVHEKD------VIGVTHHPHRNLLATYGEDCTMKL 509 (512)
Q Consensus 460 ~~dg~i~iwd~~~~~~~~~~~~h~~~------v~~v~~~p~~~~l~s~~~dg~i~i 509 (512)
+.+| |++||+.+++.+..++..... ...+.|.++.++++- +.-+|+|
T Consensus 177 nd~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~LVIG--W~d~v~i 229 (846)
T KOG2066|consen 177 NDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDRLVIG--WGDSVKI 229 (846)
T ss_pred cCCC-cEEEeccccceeeccCCCCCCCCcccCCCceEecCCCeEEEe--cCCeEEE
Confidence 7665 799999999888777654433 336788776655543 3334554
No 331
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.62 E-value=1.3e-05 Score=81.67 Aligned_cols=235 Identities=16% Similarity=0.155 Sum_probs=142.0
Q ss_pred cCcceeEEEEcCCCCeEEEEeCCCeEEEEEccCCeeeEEeccccccCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCcee
Q 010362 262 HDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLL 341 (512)
Q Consensus 262 h~~~v~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~ 341 (512)
....|.++.|..+..-++.+..+|.|.+-|..+...... ..-...|.+++|+||+..++..+..+++.+-+ .+..++
T Consensus 67 gd~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eiv--g~vd~GI~aaswS~Dee~l~liT~~~tll~mT-~~f~~i 143 (1265)
T KOG1920|consen 67 GDDEIVSVQFLADTNSICVITALGDIILVDPETLELEIV--GNVDNGISAASWSPDEELLALITGRQTLLFMT-KDFEPI 143 (1265)
T ss_pred CCcceEEEEEecccceEEEEecCCcEEEEcccccceeee--eeccCceEEEeecCCCcEEEEEeCCcEEEEEe-ccccch
Confidence 346899999999999999999999999998877654322 24568899999999999999999888876654 334443
Q ss_pred EEeeCC-----ccceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeecCCCCCCCCCCceeEEEEEcCCCCCeEEE--
Q 010362 342 KEFRGH-----SSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVV-- 414 (512)
Q Consensus 342 ~~~~~~-----~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~-- 414 (512)
....-+ .+....+-|-.....+ -|+ .|...-.+... ..+... .......-+++.|-.++ .++++
T Consensus 144 ~E~~L~~d~~~~sk~v~VGwGrkeTqf-rgs-~gr~~~~~~~~-----~ek~~~-~~~~~~~~~~IsWRgDg-~~fAVs~ 214 (1265)
T KOG1920|consen 144 AEKPLDADDERKSKFVNVGWGRKETQF-RGS-EGRQAARQKIE-----KEKALE-QIEQDDHKTSISWRGDG-EYFAVSF 214 (1265)
T ss_pred hccccccccccccccceecccccceee-ecc-hhhhccccccc-----cccccc-chhhccCCceEEEccCC-cEEEEEE
Confidence 322211 1122223333221111 111 11111111100 000000 00122334567887777 66666
Q ss_pred ---EcCCCcEEEEecCCeEEEEeeCCcccCCcEEEEEECCCCCEEEEEe---CCCeEEEEEcCC---CeeEEeccccCCC
Q 010362 415 ---CNKTSSIYIMTLQGQVVKSFSSGKREGGDFVAACVSPKGEWIYCVG---EDRNLYCFSHQS---GKLEHLMKVHEKD 485 (512)
Q Consensus 415 ---~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~---~dg~i~iwd~~~---~~~~~~~~~h~~~ 485 (512)
......+++||.+|... ..... ..+.-.+++|-|.|..+++-. +|+.|.+|..+. |+..-.+.....+
T Consensus 215 ~~~~~~~RkirV~drEg~Ln-s~se~--~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ 291 (1265)
T KOG1920|consen 215 VESETGTRKIRVYDREGALN-STSEP--VEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKE 291 (1265)
T ss_pred EeccCCceeEEEecccchhh-cccCc--ccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccc
Confidence 23337899999884332 22221 123356899999999998875 566798988542 2222223334455
Q ss_pred eEEEEEcCCCCeEEE---EECCCeEEEec
Q 010362 486 VIGVTHHPHRNLLAT---YGEDCTMKLWK 511 (512)
Q Consensus 486 v~~v~~~p~~~~l~s---~~~dg~i~iW~ 511 (512)
|..++|+.++..||. ......|++|-
T Consensus 292 ve~L~Wns~sdiLAv~~~~~e~~~v~lwt 320 (1265)
T KOG1920|consen 292 VEELAWNSNSDILAVVTSNLENSLVQLWT 320 (1265)
T ss_pred hheeeecCCCCceeeeecccccceEEEEE
Confidence 899999999999987 55555599983
No 332
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.61 E-value=7.1e-05 Score=66.53 Aligned_cols=185 Identities=21% Similarity=0.322 Sum_probs=123.9
Q ss_pred EEECCCCCEEEEE-----eCCCeEEEEEcC-CCeeeccccccccceeeccCcceeEEEEcCCCCeEEEEe----------
Q 010362 219 ARFSPDGQFLVSC-----SFDGFIEVWDYL-SGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGS---------- 282 (512)
Q Consensus 219 ~~~s~~~~~l~sg-----~~dg~i~iwd~~-~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~---------- 282 (512)
..||+||++|++. +..|.|-|||.. +-..+.+ +..|.-....+.+.|||+.|+++.
T Consensus 56 g~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E--------~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~G 127 (305)
T PF07433_consen 56 GVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGE--------FPSHGIGPHELLLMPDGETLVVANGGIETHPDSG 127 (305)
T ss_pred EEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeE--------ecCCCcChhhEEEcCCCCEEEEEcCCCccCcccC
Confidence 6899999999986 346899999988 3333333 333666667888999998887763
Q ss_pred --------CCCeEEEEEccCCeeeEEec---cccccCeEEEEEecCCCEEEEEeCCCc-------EEEEeCCCCceeEEe
Q 010362 283 --------QDGKIKVWRIRSGQCLRRLE---RAHSEGVTSLVFSRDGSQILSTSFDST-------ARIHGLKSGKLLKEF 344 (512)
Q Consensus 283 --------~dg~i~vwd~~~~~~~~~~~---~~~~~~i~~~~~~~~~~~l~~~~~dg~-------v~i~d~~~~~~~~~~ 344 (512)
.+.++...|..+|+.+.+.. ..|...|..+++.++|..++..-..|. |.+++ .++.+..+
T Consensus 128 R~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~--~g~~~~~~ 205 (305)
T PF07433_consen 128 RAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHR--RGGALRLL 205 (305)
T ss_pred ceecChhhcCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEc--CCCcceec
Confidence 23467777888898877643 136678999999999876665544332 33443 23323322
Q ss_pred e-------CCccceeEEEEcCCCCEEEEEe-CCCcEEEEeCCCCceeeecCCCCCCCCCCceeEEEEEcCCCCCeEEEEc
Q 010362 345 R-------GHSSYVNDAIFTNDGSRVVTAS-SDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCN 416 (512)
Q Consensus 345 ~-------~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~ 416 (512)
. ...+.+-+|++++++..+++++ ..|.+.+||..++..+.....+ .+..++..+.+ +++++
T Consensus 206 ~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l~--------D~cGva~~~~~---f~~ss 274 (305)
T PF07433_consen 206 PAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVPLP--------DACGVAPTDDG---FLVSS 274 (305)
T ss_pred cCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeeccccC--------ceeeeeecCCc---eEEeC
Confidence 2 2346789999999998775554 5778999999999887765533 34455555443 55555
Q ss_pred CCCcEEEE
Q 010362 417 KTSSIYIM 424 (512)
Q Consensus 417 ~~~~i~~~ 424 (512)
..|.+...
T Consensus 275 G~G~~~~~ 282 (305)
T PF07433_consen 275 GQGQLIRL 282 (305)
T ss_pred CCccEEEc
Confidence 55554433
No 333
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.60 E-value=3.5e-05 Score=73.78 Aligned_cols=221 Identities=15% Similarity=0.219 Sum_probs=114.6
Q ss_pred CcCceEEEEECCCCCEEEEEeCCCeEEEEEcCCCeeeccccccccceeeccCcceeEEEEcCCCCeEEEEeCCCeEEEEE
Q 010362 212 TKSHAECARFSPDGQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWR 291 (512)
Q Consensus 212 h~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~vwd 291 (512)
.......++++|+|+++++++ ||.-.|+.....+.. ..+.-...+|.+.+ .+|+-...++|.++.
T Consensus 31 ~~~~p~~ls~npngr~v~V~g-~geY~iyt~~~~r~k-------------~~G~g~~~vw~~~n-~yAv~~~~~~I~I~k 95 (443)
T PF04053_consen 31 CEIYPQSLSHNPNGRFVLVCG-DGEYEIYTALAWRNK-------------AFGSGLSFVWSSRN-RYAVLESSSTIKIYK 95 (443)
T ss_dssp -SS--SEEEE-TTSSEEEEEE-TTEEEEEETTTTEEE-------------EEEE-SEEEE-TSS-EEEEE-TTS-EEEEE
T ss_pred CCcCCeeEEECCCCCEEEEEc-CCEEEEEEccCCccc-------------ccCceeEEEEecCc-cEEEEECCCeEEEEE
Confidence 344477899999999999965 888999883332211 23456678899955 477777788999974
Q ss_pred ccCCeeeEEeccccccCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeeCCccceeEEEEcCCCCEEEEEeCCCc
Q 010362 292 IRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCT 371 (512)
Q Consensus 292 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 371 (512)
--+.+....+.. ...+..+-. |..|...+. +.|.+||+.+++.+..+... +|..+.|+++|++++..+.+ .
T Consensus 96 n~~~~~~k~i~~--~~~~~~If~---G~LL~~~~~-~~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~~-~ 166 (443)
T PF04053_consen 96 NFKNEVVKSIKL--PFSVEKIFG---GNLLGVKSS-DFICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVTKD-S 166 (443)
T ss_dssp TTEE-TT-------SS-EEEEE----SSSEEEEET-TEEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-S--S
T ss_pred cCccccceEEcC--CcccceEEc---CcEEEEECC-CCEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEeCC-e
Confidence 333333334432 223444433 777777764 48999999999999998744 38999999999999988866 6
Q ss_pred EEEEeCCCCc-----------eeeecCCCCCCCCCCceeEEEEEcCCCCCeEEEEcCCCcEEEEecCCeEEEEeeCCccc
Q 010362 372 VKVWDLKSTD-----------CLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQVVKSFSSGKRE 440 (512)
Q Consensus 372 i~iwd~~~~~-----------~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 440 (512)
+.+++..... ....+. .....|.+..|..+ .++..+.. .+.. +-++....+...
T Consensus 167 i~il~~~~~~~~~~~~~g~e~~f~~~~------E~~~~IkSg~W~~d---~fiYtT~~-~lkY--l~~Ge~~~i~~l--- 231 (443)
T PF04053_consen 167 IYILKYNLEAVAAIPEEGVEDAFELIH------EISERIKSGCWVED---CFIYTTSN-HLKY--LVNGETGIIAHL--- 231 (443)
T ss_dssp EEEEEE-HHHHHHBTTTB-GGGEEEEE------EE-S--SEEEEETT---EEEEE-TT-EEEE--EETTEEEEEEE----
T ss_pred EEEEEecchhcccccccCchhceEEEE------EecceeEEEEEEcC---EEEEEcCC-eEEE--EEcCCcceEEEc---
Confidence 8887654330 111110 01345666777643 34433333 5554 222211111111
Q ss_pred CCcEEEEEECCCCCEEEEEeCCCeEEEEEcC
Q 010362 441 GGDFVAACVSPKGEWIYCVGEDRNLYCFSHQ 471 (512)
Q Consensus 441 ~~~~~~~~~s~~g~~l~~g~~dg~i~iwd~~ 471 (512)
..++.-+.+.+..+.++....|+.|..+.+.
T Consensus 232 d~~~yllgy~~~~~~ly~~Dr~~~v~~~~ld 262 (443)
T PF04053_consen 232 DKPLYLLGYLPKENRLYLIDRDGNVISYELD 262 (443)
T ss_dssp SS--EEEEEETTTTEEEEE-TT--EEEEE--
T ss_pred CCceEEEEEEccCCEEEEEECCCCEEEEEEC
Confidence 1234455566666677777777777777654
No 334
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.57 E-value=2.5e-06 Score=73.63 Aligned_cols=205 Identities=11% Similarity=0.187 Sum_probs=131.0
Q ss_pred cccCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCc-----eeEEeeCCc------------cceeEEEEcCCC--CEEEE
Q 010362 305 HSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGK-----LLKEFRGHS------------SYVNDAIFTNDG--SRVVT 365 (512)
Q Consensus 305 ~~~~i~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~-----~~~~~~~~~------------~~v~~~~~~~~~--~~l~~ 365 (512)
....|+++.|...|.++++|...|.|.++.-+... ....+++|. ..|..+.|..++ ..++.
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl 104 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL 104 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence 45679999999999999999999999998754322 223355553 247778886544 35777
Q ss_pred EeCCCcEEEEeCCCCcee----------------------eecCCCC---------------CCCCCCceeEEEEEcCCC
Q 010362 366 ASSDCTVKVWDLKSTDCL----------------------QTFKPPP---------------PLRGGDASVNSVHLFPKN 408 (512)
Q Consensus 366 ~~~dg~i~iwd~~~~~~~----------------------~~~~~~~---------------~~~~~~~~i~~~~~~~~~ 408 (512)
.+.|.+|++|.+...... +.+..+. ....|...++++.+..+.
T Consensus 105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~ 184 (460)
T COG5170 105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDK 184 (460)
T ss_pred ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCch
Confidence 788999999988654110 0000000 012445567777777664
Q ss_pred CCeEEEEcCCCcEEEEecC--CeEEEEeeCCcc----cCCcEEEEEECCCC-CEEEEEeCCCeEEEEEcCCCee------
Q 010362 409 PDHIVVCNKTSSIYIMTLQ--GQVVKSFSSGKR----EGGDFVAACVSPKG-EWIYCVGEDRNLYCFSHQSGKL------ 475 (512)
Q Consensus 409 ~~~l~~~~~~~~i~~~~~~--~~~~~~~~~~~~----~~~~~~~~~~s~~g-~~l~~g~~dg~i~iwd~~~~~~------ 475 (512)
..+....+-+|-+|++. ..........+. -..-|++..|+|.. +.+...+..|.|++-|++...+
T Consensus 185 --et~lSaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~k 262 (460)
T COG5170 185 --ETLLSADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKK 262 (460)
T ss_pred --heeeeccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchh
Confidence 44456678889999987 222222221111 01235677888864 4566677899999999984321
Q ss_pred EE----------eccccCCCeEEEEEcCCCCeEEEEECCCeEEEecC
Q 010362 476 EH----------LMKVHEKDVIGVTHHPHRNLLATYGEDCTMKLWKP 512 (512)
Q Consensus 476 ~~----------~~~~h~~~v~~v~~~p~~~~l~s~~~dg~i~iW~~ 512 (512)
+. -+..-.+.|..+.|+|+|+++++-+. -+|+|||.
T Consensus 263 lfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDv 308 (460)
T COG5170 263 LFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDV 308 (460)
T ss_pred hhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEec
Confidence 11 11122356889999999999987654 47999983
No 335
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.56 E-value=9.9e-05 Score=72.95 Aligned_cols=238 Identities=14% Similarity=0.191 Sum_probs=139.5
Q ss_pred CEEEEEeCCCeEEEEEcCCCeeeccccccccceeeccCcceeEEEEcC--CCCeEEEEe---------CCCeEEEEEccC
Q 010362 226 QFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSR--DSEMLASGS---------QDGKIKVWRIRS 294 (512)
Q Consensus 226 ~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~--~~~~l~s~~---------~dg~i~vwd~~~ 294 (512)
..++.++.+|.|.-+|.++|+............ .. ..+.-+| .+..++.++ .+|.+..+|..+
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~---~~---~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~T 184 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVP---PG---YTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVET 184 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCEeeeecCCCCcC---cc---eEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCC
Confidence 678888889999999999999876654322100 00 0011111 123444443 368899999999
Q ss_pred CeeeEEeccccccC-------------------e-EEEEEecCCCEEEEEeCCC------------------cEEEEeCC
Q 010362 295 GQCLRRLERAHSEG-------------------V-TSLVFSRDGSQILSTSFDS------------------TARIHGLK 336 (512)
Q Consensus 295 ~~~~~~~~~~~~~~-------------------i-~~~~~~~~~~~l~~~~~dg------------------~v~i~d~~ 336 (512)
|+.+.++....... + ...++.+.+..++.++.++ .|.-+|.+
T Consensus 185 G~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~ 264 (488)
T cd00216 185 GKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDAD 264 (488)
T ss_pred CceeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCC
Confidence 99888775321110 1 1234445567788887665 79999999
Q ss_pred CCceeEEeeCCccce------eEEEEc----CCCC---EEEEEeCCCcEEEEeCCCCceeeecCCCCCCCCCCceeEEEE
Q 010362 337 SGKLLKEFRGHSSYV------NDAIFT----NDGS---RVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVH 403 (512)
Q Consensus 337 ~~~~~~~~~~~~~~v------~~~~~~----~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~~~ 403 (512)
+|+....++.-.... ....+. -++. .++.++.+|.+...|.++++.+....... ..+.
T Consensus 265 tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~~---------~~~~ 335 (488)
T cd00216 265 TGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEVE---------QPMA 335 (488)
T ss_pred CCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEeec---------cccc
Confidence 999988875311111 111111 1333 57788889999999999999877654220 0111
Q ss_pred EcCCCCCeEEE------------------EcCCCcEEEEecC-CeEEEEeeCCccc-----CCcEEEEEECCCCCEEEEE
Q 010362 404 LFPKNPDHIVV------------------CNKTSSIYIMTLQ-GQVVKSFSSGKRE-----GGDFVAACVSPKGEWIYCV 459 (512)
Q Consensus 404 ~~~~~~~~l~~------------------~~~~~~i~~~~~~-~~~~~~~~~~~~~-----~~~~~~~~~s~~g~~l~~g 459 (512)
..| ..+++ ...++.+...|.. ++.+-........ +.+.........+..|+++
T Consensus 336 ~~~---~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g 412 (488)
T cd00216 336 YDP---GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAG 412 (488)
T ss_pred cCC---ceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEecCCeEEEE
Confidence 111 11111 1235667777765 4443333322100 0111111112256789999
Q ss_pred eCCCeEEEEEcCCCeeEEeccc
Q 010362 460 GEDRNLYCFSHQSGKLEHLMKV 481 (512)
Q Consensus 460 ~~dg~i~iwd~~~~~~~~~~~~ 481 (512)
+.||.++.+|..+|+.+-..+.
T Consensus 413 ~~dG~l~ald~~tG~~lW~~~~ 434 (488)
T cd00216 413 AADGYFRAFDATTGKELWKFRT 434 (488)
T ss_pred CCCCeEEEEECCCCceeeEEEC
Confidence 9999999999999999877654
No 336
>smart00667 LisH Lissencephaly type-1-like homology motif. Alpha-helical motif present in Lis1, treacle, Nopp140, some katanin p60 subunits, muskelin, tonneau, LEUNIG and numerous WD40 repeat-containing proteins. It is suggested that LisH motifs contribute to the regulation of microtubule dynamics, either by mediating dimerisation, or else by binding cytoplasmic dynein heavy chain or microtubules directly.
Probab=98.52 E-value=1.4e-07 Score=54.79 Aligned_cols=32 Identities=25% Similarity=0.454 Sum_probs=29.9
Q ss_pred chhhHHHHHHHHHHhcChHHHHHHHHhhcCcc
Q 010362 6 EARDVIKIVLQFCKENSLQQTFQTLQNECQVS 37 (512)
Q Consensus 6 ~~~e~~~li~q~L~e~G~~~t~~~l~~Es~~~ 37 (512)
.+++++++|+|||..+||.+|+.+|++|+|+.
T Consensus 2 ~~~~l~~lI~~yL~~~g~~~ta~~l~~e~~~~ 33 (34)
T smart00667 2 SRSELNRLILEYLLRNGYEETAETLQKESGLS 33 (34)
T ss_pred cHHHHHHHHHHHHHHcCHHHHHHHHHHHhCCC
Confidence 46899999999999999999999999999974
No 337
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.52 E-value=1.1e-07 Score=92.89 Aligned_cols=187 Identities=18% Similarity=0.192 Sum_probs=133.1
Q ss_pred EEeccccccCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeeCCccceeEEEEcCCCCEEEEEeCCC--cEEEEe
Q 010362 299 RRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDC--TVKVWD 376 (512)
Q Consensus 299 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--~i~iwd 376 (512)
+.+. .+....+|++|+-+.++|++|+..|.|+++++.+|.......+|.++|+.+.-+.+|..+++.+.-. -..+|+
T Consensus 1095 ~~fr-d~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~ 1173 (1516)
T KOG1832|consen 1095 RSFR-DETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWD 1173 (1516)
T ss_pred hhhh-ccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHhc
Confidence 3443 6778899999999999999999999999999999999999999999999999999999887765533 367898
Q ss_pred CCC-CceeeecCCCCCCCCCCceeEEEEEcCCCCCeEEEEcCCCcEEEEecC-CeEEEEeeC-CcccCCcEEEEEECCCC
Q 010362 377 LKS-TDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQ-GQVVKSFSS-GKREGGDFVAACVSPKG 453 (512)
Q Consensus 377 ~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~s~~g 453 (512)
+.+ +....++. .-.++.|+... ..-+.|+......+||+. +..+.++.. .......-....|+|+.
T Consensus 1174 ~~s~~~~~Hsf~----------ed~~vkFsn~~-q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D 1242 (1516)
T KOG1832|consen 1174 ASSTGGPRHSFD----------EDKAVKFSNSL-QFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCD 1242 (1516)
T ss_pred cccccCcccccc----------ccceeehhhhH-HHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCc
Confidence 865 22223332 33456666553 445566666788999998 444443222 22222334678899999
Q ss_pred CEEEEEeCCCeEEEEEcCCCeeEEeccccCCCeEEEEEcCCCCeEEEEEC
Q 010362 454 EWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPHRNLLATYGE 503 (512)
Q Consensus 454 ~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~~~ 503 (512)
.+|+- || .+||++..+.++.+...+..+ .=.|||.|.-++.-+.
T Consensus 1243 ~LIln---dG--vLWDvR~~~aIh~FD~ft~~~-~G~FHP~g~eVIINSE 1286 (1516)
T KOG1832|consen 1243 TLILN---DG--VLWDVRIPEAIHRFDQFTDYG-GGGFHPSGNEVIINSE 1286 (1516)
T ss_pred ceEee---Cc--eeeeeccHHHHhhhhhheecc-cccccCCCceEEeech
Confidence 98864 44 579999887777665444222 2358999887776654
No 338
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.51 E-value=3.1e-06 Score=83.44 Aligned_cols=183 Identities=11% Similarity=0.171 Sum_probs=137.0
Q ss_pred CCCEEEEEeCCCeEEEEEcCCCeeeccccccccceeeccCcceeEEEEcCCCCeEEEEeCCCeEEEEEccCCeeeEEecc
Q 010362 224 DGQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLER 303 (512)
Q Consensus 224 ~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~ 303 (512)
++..++.|+-...+..+|+.+.+..+.... ..+.|+-|+. +++.+.+|...|+|.+-|..+.+.+.++.
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v--------~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~~iht~~- 214 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNV--------SASGVTIMRY--NNRNLFCGDTRGTVFLRDPNSFETIHTFD- 214 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeec--------cCCceEEEEe--cCcEEEeecccceEEeecCCcCceeeeee-
Confidence 455677787777888899988876655433 2334555554 57899999999999999999999999997
Q ss_pred ccccCeEEEEEecCCCEEEEEeC---------CCcEEEEeCCCCceeEEeeCCccceeEEEEcCC-CCEEEEEeCCCcEE
Q 010362 304 AHSEGVTSLVFSRDGSQILSTSF---------DSTARIHGLKSGKLLKEFRGHSSYVNDAIFTND-GSRVVTASSDCTVK 373 (512)
Q Consensus 304 ~~~~~i~~~~~~~~~~~l~~~~~---------dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~ 373 (512)
.|.+.|.++... |+.|++++. |..|++||++..+.+..+.-+.++ .-+.|.|. ...+++++..|...
T Consensus 215 aHs~siSDfDv~--GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~q 291 (1118)
T KOG1275|consen 215 AHSGSISDFDVQ--GNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQ 291 (1118)
T ss_pred ccccceeeeecc--CCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhhhhcccccceEEEEeccccee
Confidence 899999987765 888888875 556899999988877776655553 44677774 35688888899999
Q ss_pred EEeCCCCc-e---eeecCCCCCCCCCCceeEEEEEcCCCCCeEEEEcCCCcEEEEecC
Q 010362 374 VWDLKSTD-C---LQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQ 427 (512)
Q Consensus 374 iwd~~~~~-~---~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~~~~~ 427 (512)
+-|..+.. + ...+. .....+.++.+++.+ +.++.+..+|.|.+|.-+
T Consensus 292 ~vd~~~lsNP~~~~~~v~------p~~s~i~~fDiSsn~-~alafgd~~g~v~~wa~~ 342 (1118)
T KOG1275|consen 292 FVDTATLSNPPAGVKMVN------PNGSGISAFDISSNG-DALAFGDHEGHVNLWADR 342 (1118)
T ss_pred eccccccCCCccceeEEc------cCCCcceeEEecCCC-ceEEEecccCcEeeecCC
Confidence 99844321 1 11111 122348889999988 999999999999999854
No 339
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.50 E-value=0.00026 Score=67.44 Aligned_cols=70 Identities=13% Similarity=0.135 Sum_probs=60.0
Q ss_pred cCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCeeEEeccccCCCeEEEEEcCCCCeEEEEECCCeEEEec
Q 010362 440 EGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPHRNLLATYGEDCTMKLWK 511 (512)
Q Consensus 440 ~~~~~~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~~~dg~i~iW~ 511 (512)
....+.+++++|+...++.|+.||.|.+||...+..... ...-.++.++|||+|.++++|+..|.+.+||
T Consensus 258 L~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~--ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD 327 (545)
T PF11768_consen 258 LPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLA--KAEFIPTLIAWHPDGAIFVVGSEQGELQCFD 327 (545)
T ss_pred cCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeeee--eecccceEEEEcCCCcEEEEEcCCceEEEEE
Confidence 356789999999999999999999999999877643322 3445678999999999999999999999998
No 340
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=98.49 E-value=0.00014 Score=66.48 Aligned_cols=236 Identities=15% Similarity=0.217 Sum_probs=134.2
Q ss_pred CCCCEEEEEeCCCeEEEEEcCCCeeeccccccccceeeccCcceeEEEEcCCCCeEEEEeCCCeEEEEEccCCeeeEEe-
Q 010362 223 PDGQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRL- 301 (512)
Q Consensus 223 ~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~- 301 (512)
..++.|+.|+.+| +.+++.........+. +..+|..+...|+-+.+++-+ |+.+.++++..-......
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~---------~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~ 73 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRIL---------KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSA 73 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccceeEe---------ecceEEEEEEecccCEEEEEc-CCccEEEEchhhccccccc
Confidence 3678899999888 8999983222111111 344599999999877777665 699999998765433311
Q ss_pred ------------ccccccCeEEEE--EecCCCEEEEEeCCCcEEEEeCCCC-----ceeEEeeCCccceeEEEEcCCCCE
Q 010362 302 ------------ERAHSEGVTSLV--FSRDGSQILSTSFDSTARIHGLKSG-----KLLKEFRGHSSYVNDAIFTNDGSR 362 (512)
Q Consensus 302 ------------~~~~~~~i~~~~--~~~~~~~l~~~~~dg~v~i~d~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~ 362 (512)
.......+..++ -.+.+...++......|.+|..... +..+++. -...+.+++|. ++.
T Consensus 74 ~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~-lp~~~~~i~~~--~~~ 150 (275)
T PF00780_consen 74 PLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEIS-LPDPPSSIAFL--GNK 150 (275)
T ss_pred cccccccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEE-cCCCcEEEEEe--CCE
Confidence 112234455555 1223334444444568888877543 3445554 34668899998 456
Q ss_pred EEEEeCCCcEEEEeCCCCceeeecCCCCCC------CCCCceeEEEEEcCCCCCeEEEEcCCCcEEEEecCCeEEEEeeC
Q 010362 363 VVTASSDCTVKVWDLKSTDCLQTFKPPPPL------RGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQVVKSFSS 436 (512)
Q Consensus 363 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~------~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~ 436 (512)
++.|..++ ..+.|+.++.....+...... .....++..+.. +++ .+++ +. +..-.+.|..|...+....
T Consensus 151 i~v~~~~~-f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-e~Ll-~~-~~~g~fv~~~G~~~r~~~i 225 (275)
T PF00780_consen 151 ICVGTSKG-FYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQL-SDN-EFLL-CY-DNIGVFVNKNGEPSRKSTI 225 (275)
T ss_pred EEEEeCCc-eEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEe-CCc-eEEE-Ee-cceEEEEcCCCCcCcccEE
Confidence 77777554 888999977654433222110 011122222222 222 3443 33 3344445555554331110
Q ss_pred CcccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCeeEEecccc
Q 010362 437 GKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVH 482 (512)
Q Consensus 437 ~~~~~~~~~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~h 482 (512)
.- ......+++ ...||++.+.+ .|.||++.++++++.+..+
T Consensus 226 ~W--~~~p~~~~~--~~pyli~~~~~-~iEV~~~~~~~lvQ~i~~~ 266 (275)
T PF00780_consen 226 QW--SSAPQSVAY--SSPYLIAFSSN-SIEVRSLETGELVQTIPLP 266 (275)
T ss_pred Ec--CCchhEEEE--ECCEEEEECCC-EEEEEECcCCcEEEEEECC
Confidence 00 112334444 34577777664 5999999999998888644
No 341
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.48 E-value=0.00029 Score=63.51 Aligned_cols=275 Identities=15% Similarity=0.162 Sum_probs=155.8
Q ss_pred cccccCccccceEEEecCcCceEEEEECCCCCEEEEEe----------CCCeEEEEEcCCCeeeccccccccceeeccCc
Q 010362 195 DVEDMYPTTLSHTIKFGTKSHAECARFSPDGQFLVSCS----------FDGFIEVWDYLSGKLKKDLQYQADETFMMHDE 264 (512)
Q Consensus 195 ~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~sg~----------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~ 264 (512)
-+.|....+..-.+..+..+ .+..||+|+.+++++ ..-.|.+||..+-....++..++..... ...
T Consensus 20 ~viD~d~~k~lGmi~~g~~~---~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~-~~~ 95 (342)
T PF06433_consen 20 YVIDADSGKLLGMIDTGFLG---NVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQ-VVP 95 (342)
T ss_dssp EEEETTTTEEEEEEEEESSE---EEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B---BS-
T ss_pred EEEECCCCcEEEEeecccCC---ceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchhe-ecc
Confidence 34444455555556555443 366899999988754 2347999999998887777665431111 112
Q ss_pred ceeEEEEcCCCCeEEEEeC--CCeEEEEEccCCeeeEEeccccccCeEEEEEecCCCEEEEEeCCCcEEEEeCC-CCcee
Q 010362 265 TVLCIEFSRDSEMLASGSQ--DGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLK-SGKLL 341 (512)
Q Consensus 265 ~v~~l~~s~~~~~l~s~~~--dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~i~d~~-~~~~~ 341 (512)
....++++.|+++++.... -.+|.|-|+..++.+..+.. ..+..+--++ ...|.+-|.||.+....+. .|+..
T Consensus 96 ~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~---PGC~~iyP~~-~~~F~~lC~DGsl~~v~Ld~~Gk~~ 171 (342)
T PF06433_consen 96 YKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDT---PGCWLIYPSG-NRGFSMLCGDGSLLTVTLDADGKEA 171 (342)
T ss_dssp -GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEG---TSEEEEEEEE-TTEEEEEETTSCEEEEEETSTSSEE
T ss_pred cccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecC---CCEEEEEecC-CCceEEEecCCceEEEEECCCCCEe
Confidence 3445688999998887643 45799999999998887752 2222222222 3458888889999988887 45554
Q ss_pred EEee----CCccc-eeEEEEcCCCCEEEEEeCCCcEEEEeCCCCceee--ecCCCCCCCC----CCceeEEEEEcCCCCC
Q 010362 342 KEFR----GHSSY-VNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQ--TFKPPPPLRG----GDASVNSVHLFPKNPD 410 (512)
Q Consensus 342 ~~~~----~~~~~-v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~--~~~~~~~~~~----~~~~i~~~~~~~~~~~ 410 (512)
.+.. ....+ ...-++...+..++-.+.+|.|+--|+....... .+........ ..+.-.-+++++....
T Consensus 172 ~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~r 251 (342)
T PF06433_consen 172 QKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGR 251 (342)
T ss_dssp EEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTE
T ss_pred EeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCe
Confidence 3221 11122 2233444555556667888999888887654221 1111000000 0112233555554433
Q ss_pred eEEEEc-------CCC--cEEEEecC-CeEEEEeeCCcccCCcEEEEEECCCCC-EEEEEe-CCCeEEEEEcCCCeeEEe
Q 010362 411 HIVVCN-------KTS--SIYIMTLQ-GQVVKSFSSGKREGGDFVAACVSPKGE-WIYCVG-EDRNLYCFSHQSGKLEHL 478 (512)
Q Consensus 411 ~l~~~~-------~~~--~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~s~~g~-~l~~g~-~dg~i~iwd~~~~~~~~~ 478 (512)
+++.-. .++ .|+++|.. ++.+.++... .++.++.++.+.+ +|++.+ .++.+.+||..+|+++..
T Consensus 252 lyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~----~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~ 327 (342)
T PF06433_consen 252 LYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLE----HPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRS 327 (342)
T ss_dssp EEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEE----EEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEE
T ss_pred EEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCC----CccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEee
Confidence 333321 112 36666766 4555555432 2366888888776 555544 689999999999999988
Q ss_pred ccc
Q 010362 479 MKV 481 (512)
Q Consensus 479 ~~~ 481 (512)
+..
T Consensus 328 ~~~ 330 (342)
T PF06433_consen 328 IEQ 330 (342)
T ss_dssp E--
T ss_pred hhc
Confidence 764
No 342
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.47 E-value=1.8e-06 Score=81.51 Aligned_cols=82 Identities=20% Similarity=0.247 Sum_probs=67.9
Q ss_pred eEEEecCcCceEEEEECCCCCEEEEEeCCCeEEEEEcCCCeeeccccccccceeeccCcceeEEEEcCCCCeEEEEeCCC
Q 010362 206 HTIKFGTKSHAECARFSPDGQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQDG 285 (512)
Q Consensus 206 ~~~~~~h~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg 285 (512)
........+.|.|++++|+.+.|+.|+.||+|.+||...+.... ....-.++.++|+|+|..+++|+..|
T Consensus 252 svtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~----------~ka~~~P~~iaWHp~gai~~V~s~qG 321 (545)
T PF11768_consen 252 SVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLL----------AKAEFIPTLIAWHPDGAIFVVGSEQG 321 (545)
T ss_pred EEEEEecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeee----------eeecccceEEEEcCCCcEEEEEcCCc
Confidence 34456788999999999999999999999999999987664322 11445678999999999999999999
Q ss_pred eEEEEEccCCee
Q 010362 286 KIKVWRIRSGQC 297 (512)
Q Consensus 286 ~i~vwd~~~~~~ 297 (512)
.+.+||+.-+..
T Consensus 322 elQ~FD~ALspi 333 (545)
T PF11768_consen 322 ELQCFDMALSPI 333 (545)
T ss_pred eEEEEEeecCcc
Confidence 999999875543
No 343
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=98.42 E-value=0.00042 Score=66.55 Aligned_cols=200 Identities=16% Similarity=0.205 Sum_probs=105.3
Q ss_pred eEEEEEccCCeeeEEeccccccCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEe-------eCCccceeEEEEcC
Q 010362 286 KIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEF-------RGHSSYVNDAIFTN 358 (512)
Q Consensus 286 ~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~-------~~~~~~v~~~~~~~ 358 (512)
.|.||+. .|+.+.++.-.. +.+.++.|+.+. .|++...||.+++||+. |+....+ .-....+....+..
T Consensus 62 ~I~iys~-sG~ll~~i~w~~-~~iv~~~wt~~e-~LvvV~~dG~v~vy~~~-G~~~fsl~~~i~~~~v~e~~i~~~~~~~ 137 (410)
T PF04841_consen 62 SIQIYSS-SGKLLSSIPWDS-GRIVGMGWTDDE-ELVVVQSDGTVRVYDLF-GEFQFSLGEEIEEEKVLECRIFAIWFYK 137 (410)
T ss_pred EEEEECC-CCCEeEEEEECC-CCEEEEEECCCC-eEEEEEcCCEEEEEeCC-CceeechhhhccccCcccccccccccCC
Confidence 5999984 577777776434 899999999765 56666789999999985 4331111 11111122223333
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCc-eeeecCCCCCCCC--C-CceeEE-EEEcCCCCCeEEEEcCCCcEEEEecCCeEEEE
Q 010362 359 DGSRVVTASSDCTVKVWDLKSTD-CLQTFKPPPPLRG--G-DASVNS-VHLFPKNPDHIVVCNKTSSIYIMTLQGQVVKS 433 (512)
Q Consensus 359 ~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~--~-~~~i~~-~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~ 433 (512)
+| ++.-..++.+.+.+--... ....+........ + ...... ..+..+. ...+....++.+.+.+-..- ..
T Consensus 138 ~G--ivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~-~~~i~~~~g~~i~~i~~~~~--~~ 212 (410)
T PF04841_consen 138 NG--IVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDR-VVEILLANGETIYIIDENSF--KQ 212 (410)
T ss_pred CC--EEEECCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCc-ceEEEEecCCEEEEEEcccc--cc
Confidence 45 3333344445444322211 1111111110000 0 000111 1122222 33333334444443332211 00
Q ss_pred eeCCcccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCeeEEecccc-CCCeEEEEEcCCCCeE
Q 010362 434 FSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVH-EKDVIGVTHHPHRNLL 498 (512)
Q Consensus 434 ~~~~~~~~~~~~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~h-~~~v~~v~~~p~~~~l 498 (512)
....+++..+++||+|+++|.-..+|.+.+.+..-.+....+... ......+.|.-+...+
T Consensus 213 ----i~~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~dav~ 274 (410)
T PF04841_consen 213 ----IDSDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGNDAVV 274 (410)
T ss_pred ----ccCCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCCcEE
Confidence 112357999999999999999999999999987666655555433 3456678887654433
No 344
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.38 E-value=0.00027 Score=66.90 Aligned_cols=237 Identities=18% Similarity=0.219 Sum_probs=137.0
Q ss_pred cCceEEEEECCCCCEEEEEeCCCeEEEEEcCCCeeeccccccccceeeccC---------cceeEEEEcCCCCeEEEEeC
Q 010362 213 KSHAECARFSPDGQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHD---------ETVLCIEFSRDSEMLASGSQ 283 (512)
Q Consensus 213 ~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~---------~~v~~l~~s~~~~~l~s~~~ 283 (512)
...+....|||+|+.+|... ++.|.+++..++...+--.......+.|-. +.-..+-||||+++||....
T Consensus 42 ~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~ 120 (353)
T PF00930_consen 42 PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRF 120 (353)
T ss_dssp ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEE
T ss_pred ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEE
Confidence 56788899999999999887 789999998777443321111111111111 12367889999999987543
Q ss_pred CC------------------------------------eEEEEEccCCeeeEEe-c---cccccCeEEEEEecCCCEEEE
Q 010362 284 DG------------------------------------KIKVWRIRSGQCLRRL-E---RAHSEGVTSLVFSRDGSQILS 323 (512)
Q Consensus 284 dg------------------------------------~i~vwd~~~~~~~~~~-~---~~~~~~i~~~~~~~~~~~l~~ 323 (512)
|. .+.|+|+.+++....- . ......+..+.|.+++..|+.
T Consensus 121 d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~ 200 (353)
T PF00930_consen 121 DEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWV 200 (353)
T ss_dssp E-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEE
T ss_pred CCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEE
Confidence 21 2444555555432111 1 123456889999999884544
Q ss_pred E--eCCC---cEEEEeCCCCceeEEeeC-Cccc---eeEEEEc-CCCC-EEEEEeCCCcEEE--EeCCCCceeeecCCCC
Q 010362 324 T--SFDS---TARIHGLKSGKLLKEFRG-HSSY---VNDAIFT-NDGS-RVVTASSDCTVKV--WDLKSTDCLQTFKPPP 390 (512)
Q Consensus 324 ~--~~dg---~v~i~d~~~~~~~~~~~~-~~~~---v~~~~~~-~~~~-~l~~~~~dg~i~i--wd~~~~~~~~~~~~~~ 390 (512)
. +.+. .+.++|..++........ .... -....+. +++. ++.....+|.-++ ++...+.. ..+.
T Consensus 201 ~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~-~~lT--- 276 (353)
T PF00930_consen 201 QWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKP-RQLT--- 276 (353)
T ss_dssp EEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEE-EESS---
T ss_pred EEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccce-eccc---
Confidence 3 3332 467788877755433322 1222 2345554 5555 4455556776444 55555442 2322
Q ss_pred CCCCCCceeEE-EEEcCCCCCeEEEEcCC----CcEEEEecC-CeEEEEeeCCcccCCcEEEEEECCCCCEEEEEe
Q 010362 391 PLRGGDASVNS-VHLFPKNPDHIVVCNKT----SSIYIMTLQ-GQVVKSFSSGKREGGDFVAACVSPKGEWIYCVG 460 (512)
Q Consensus 391 ~~~~~~~~i~~-~~~~~~~~~~l~~~~~~----~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~ 460 (512)
.....|.. +.+.+.+..+++++..+ ..++..++. +.....+....... ..+.+||+|++++...
T Consensus 277 ---~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~~~---~~~~~Spdg~y~v~~~ 346 (353)
T PF00930_consen 277 ---SGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCEDGDH---YSASFSPDGKYYVDTY 346 (353)
T ss_dssp ----SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTSSTT---EEEEE-TTSSEEEEEE
T ss_pred ---cCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCCCCc---eEEEECCCCCEEEEEE
Confidence 23455644 56777776777777763 356666777 77777777655332 6899999999987654
No 345
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.33 E-value=0.00015 Score=68.50 Aligned_cols=266 Identities=16% Similarity=0.120 Sum_probs=137.5
Q ss_pred ceEEEEECCCCCEEEEEeCCCeEEEEEcCCCeeeccccccccceeeccCcceeEEEEcCCCCeEEEEeCCCeEEEEEccC
Q 010362 215 HAECARFSPDGQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWRIRS 294 (512)
Q Consensus 215 ~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~vwd~~~ 294 (512)
.|+++.|.++..-|++|...|.|.||.+...+....- ...+-..+.+.+- ...++.-.+-|+..
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~----------~~~~~~~~~~~~~------~~~~~~~~l~di~~ 66 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNR----------EQPPDLDYNFRRF------SLNNSPGKLTDISD 66 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE----------------------------S--------GGGSS-SEEE-GG
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCcc----------CCCcccCcccccc------cccCCCcceEEehh
Confidence 4889999999999999999999999987654322100 0011111111110 00111223333322
Q ss_pred --------C-eeeEEeccccccCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEee--C------CccceeEEEEc
Q 010362 295 --------G-QCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFR--G------HSSYVNDAIFT 357 (512)
Q Consensus 295 --------~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~--~------~~~~v~~~~~~ 357 (512)
| .+..-+. ...++|++++.+ |=.++++|..+|.+.+.|++....+..-. . ....++++.|.
T Consensus 67 r~~~~~~~gf~P~~l~~-~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~ 144 (395)
T PF08596_consen 67 RAPPSLKEGFLPLTLLD-AKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFS 144 (395)
T ss_dssp G--TT-SEEEEEEEEE----S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEE
T ss_pred hCCcccccccCchhhee-ccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEE
Confidence 1 1222233 457899999997 55699999999999999998877765421 1 23468888886
Q ss_pred C-----CC---CEEEEEeCCCcEEEEeCC-C--CceeeecCCCCCCCCCCceeEEEEEc-CCC-----------------
Q 010362 358 N-----DG---SRVVTASSDCTVKVWDLK-S--TDCLQTFKPPPPLRGGDASVNSVHLF-PKN----------------- 408 (512)
Q Consensus 358 ~-----~~---~~l~~~~~dg~i~iwd~~-~--~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~----------------- 408 (512)
. |+ -.+++|+..|.+.+|.+. . +.....+... ...+..++..+... .+.
T Consensus 145 vm~~~~D~ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~--~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g 222 (395)
T PF08596_consen 145 VMTLGGDGYSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGA--TTNHDSPILSIIPINADTGESALATISAMQGLSKG 222 (395)
T ss_dssp EEE-TTSSSEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEE--E--SS----EEEEEETTT--B-B-BHHHHHGGGGT
T ss_pred EEecCCCcccceEEEEEeCCCCEEEEEEecCCCCceEEEEeec--cccCCCceEEEEEEECCCCCcccCchhHhhccccC
Confidence 2 33 468899999999999775 1 1111111111 01234455544422 111
Q ss_pred --CCeEEEEcCCCcEEEEecCCe-EEEEeeCCcccCCcEEEEEE-----CCCCCEEEEEeCCCeEEEEEcCCCeeEEecc
Q 010362 409 --PDHIVVCNKTSSIYIMTLQGQ-VVKSFSSGKREGGDFVAACV-----SPKGEWIYCVGEDRNLYCFSHQSGKLEHLMK 480 (512)
Q Consensus 409 --~~~l~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-----s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~~ 480 (512)
-..+++...+..++++..... ........ ......+++ ...+..|++-..+|.|++|.+..-+.+..+.
T Consensus 223 ~~i~g~vVvvSe~~irv~~~~~~k~~~K~~~~---~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~ 299 (395)
T PF08596_consen 223 ISIPGYVVVVSESDIRVFKPPKSKGAHKSFDD---PFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVS 299 (395)
T ss_dssp ----EEEEEE-SSEEEEE-TT---EEEEE-SS----EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE
T ss_pred CCcCcEEEEEcccceEEEeCCCCcccceeecc---ccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhccc
Confidence 123555666778888887733 22222211 112233444 2367788888899999999999988887766
Q ss_pred ccC----CCeEEEEEcCCCCeEEEEEC
Q 010362 481 VHE----KDVIGVTHHPHRNLLATYGE 503 (512)
Q Consensus 481 ~h~----~~v~~v~~~p~~~~l~s~~~ 503 (512)
.+. ..+....++++|..++-.|.
T Consensus 300 l~~~~d~~~~~~ssis~~Gdi~~~~gp 326 (395)
T PF08596_consen 300 LPPPLDSRRLSSSSISRNGDIFYWTGP 326 (395)
T ss_dssp -SS---HHHHTT-EE-TTS-EEEE-SS
T ss_pred CCCccccccccccEECCCCCEEEEeCc
Confidence 432 23445677888887765554
No 346
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.31 E-value=8.3e-06 Score=78.39 Aligned_cols=143 Identities=13% Similarity=0.146 Sum_probs=101.4
Q ss_pred cCcceeEEEEcCCCCeEEEEeCCCeEEEEEccCCeeeEEeccccccCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCcee
Q 010362 262 HDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLL 341 (512)
Q Consensus 262 h~~~v~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~ 341 (512)
|...|.--+++..+++++.|+.-|.+.+|+-..+.....-..+..+.+..++.+++..++|+|+..|.|.++-+..+.+-
T Consensus 32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~ 111 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPR 111 (726)
T ss_pred CcceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCC
Confidence 55666666777889999999999999999976665443333234556677778888889999999999999987654321
Q ss_pred -----EEe-eCCccceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeecCCCCCCCCCCceeEEEEEcC
Q 010362 342 -----KEF-RGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFP 406 (512)
Q Consensus 342 -----~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 406 (512)
... +.|...|++++|++++..+++|...|+|..-.+.+. . .-......+...+++|..+....
T Consensus 112 ~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~-~-~~~~~~q~il~~ds~IVQlD~~q 180 (726)
T KOG3621|consen 112 DLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSR-Q-AFLSKSQEILSEDSEIVQLDYLQ 180 (726)
T ss_pred cceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEechh-h-hhccccceeeccCcceEEeeccc
Confidence 111 237789999999999999999999999999888762 1 11111222233456666666543
No 347
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.31 E-value=3.3e-07 Score=86.58 Aligned_cols=200 Identities=16% Similarity=0.195 Sum_probs=133.0
Q ss_pred CcceeEEEEcCCC--CeEEEEeCCCeEEEEEccCCeee-EEeccccccCeEEEEEec-CCCEEEEEe----CCCcEEEEe
Q 010362 263 DETVLCIEFSRDS--EMLASGSQDGKIKVWRIRSGQCL-RRLERAHSEGVTSLVFSR-DGSQILSTS----FDSTARIHG 334 (512)
Q Consensus 263 ~~~v~~l~~s~~~--~~l~s~~~dg~i~vwd~~~~~~~-~~~~~~~~~~i~~~~~~~-~~~~l~~~~----~dg~v~i~d 334 (512)
...+.|++++-+. .+++.|..+|.|.+-.++..... ..+..++..++++++|++ |.+.||+|- .|..+.+||
T Consensus 56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwd 135 (783)
T KOG1008|consen 56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWD 135 (783)
T ss_pred CCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCcccee
Confidence 3457788877644 47888999999999988765433 445557888999999998 556677663 256799999
Q ss_pred CCCC--ceeE--EeeC-CccceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCc-eeeecCCCCCCCCCCceeEEEEEcCCC
Q 010362 335 LKSG--KLLK--EFRG-HSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTD-CLQTFKPPPPLRGGDASVNSVHLFPKN 408 (512)
Q Consensus 335 ~~~~--~~~~--~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~ 408 (512)
+.++ .+.. .+.+ ......+++|..+.+.+++|.....+.++|++... ....+. ...+..+.+.|..
T Consensus 136 i~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~svn--------Tk~vqG~tVdp~~ 207 (783)
T KOG1008|consen 136 INSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSVN--------TKYVQGITVDPFS 207 (783)
T ss_pred cccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhhh--------hhhcccceecCCC
Confidence 9876 2222 2222 33456688999888889999999999999998432 111211 2356677888877
Q ss_pred CCeEEEEcCCCcEEEEecCCe---EEEEeeC-CcccCCcEEEEEECCCC--CEEEEEeCCCeEEEEEcC
Q 010362 409 PDHIVVCNKTSSIYIMTLQGQ---VVKSFSS-GKREGGDFVAACVSPKG--EWIYCVGEDRNLYCFSHQ 471 (512)
Q Consensus 409 ~~~l~~~~~~~~i~~~~~~~~---~~~~~~~-~~~~~~~~~~~~~s~~g--~~l~~g~~dg~i~iwd~~ 471 (512)
+++++... ++.+.+||...+ .+..... ..........++|.|-. ...+..-..++|+.+|+.
T Consensus 208 ~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 208 PNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC 275 (783)
T ss_pred CCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence 67776665 999999994322 2111111 11112347789998854 333333366789999875
No 348
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=98.28 E-value=0.0028 Score=63.06 Aligned_cols=204 Identities=9% Similarity=0.111 Sum_probs=116.6
Q ss_pred CCEEEEEeCCCeEEEEEcCCCeeeccccccccceeec---cCcceeEEEEcCCCCeEEEEeCCCeEEEEEccCCeeeEEe
Q 010362 225 GQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMM---HDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRL 301 (512)
Q Consensus 225 ~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~---h~~~v~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~ 301 (512)
+..+++++.++.|.-.|..+|+............... +...-..+++. +..++.++.|+.+.-.|..+|+.+...
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~--~~~v~v~t~dg~l~ALDa~TGk~~W~~ 146 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALY--DGKVFFGTLDARLVALDAKTGKVVWSK 146 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceEE--CCEEEEEcCCCEEEEEECCCCCEEeec
Confidence 4567777778999999999998876654321100000 00000112222 346777888999999999999988776
Q ss_pred ccccccCeEEEEEec---CCCEEEEEeC------CCcEEEEeCCCCceeEEeeCCcc-----------------------
Q 010362 302 ERAHSEGVTSLVFSR---DGSQILSTSF------DSTARIHGLKSGKLLKEFRGHSS----------------------- 349 (512)
Q Consensus 302 ~~~~~~~i~~~~~~~---~~~~l~~~~~------dg~v~i~d~~~~~~~~~~~~~~~----------------------- 349 (512)
.......-..+.-+| ++ .+++++. +|.|..+|.++|+.+..+..-..
T Consensus 147 ~~~~~~~~~~~tssP~v~~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~~ 225 (527)
T TIGR03075 147 KNGDYKAGYTITAAPLVVKG-KVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWPG 225 (527)
T ss_pred ccccccccccccCCcEEECC-EEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCCCC
Confidence 522111101111112 34 4555542 68999999999998876543111
Q ss_pred --------ce-eEEEEcCCCCEEEEEeCC-----C-----------cEEEEeCCCCceeeecCCCCC-CCCCC--ceeEE
Q 010362 350 --------YV-NDAIFTNDGSRVVTASSD-----C-----------TVKVWDLKSTDCLQTFKPPPP-LRGGD--ASVNS 401 (512)
Q Consensus 350 --------~v-~~~~~~~~~~~l~~~~~d-----g-----------~i~iwd~~~~~~~~~~~~~~~-~~~~~--~~i~~ 401 (512)
.+ ..+++.|...+++.+..+ + .|.-.|+++|+....++.... .-..+ ....-
T Consensus 226 ~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l 305 (527)
T TIGR03075 226 DAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMIL 305 (527)
T ss_pred CccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCcEE
Confidence 01 134566666666655422 2 566778889988777664321 10111 11111
Q ss_pred EEEcCCCC--CeEEEEcCCCcEEEEecC-CeEE
Q 010362 402 VHLFPKNP--DHIVVCNKTSSIYIMTLQ-GQVV 431 (512)
Q Consensus 402 ~~~~~~~~--~~l~~~~~~~~i~~~~~~-~~~~ 431 (512)
+.+..++. ..++.+..+|.+++.|.. ++.+
T Consensus 306 ~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i 338 (527)
T TIGR03075 306 FDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLL 338 (527)
T ss_pred EEeccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence 12212332 478899999999999987 5543
No 349
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.28 E-value=0.00022 Score=69.65 Aligned_cols=190 Identities=12% Similarity=0.050 Sum_probs=112.7
Q ss_pred ECCCCCEEEEE-eCCCeEEEEEcCCCeeeccccccccceeeccCcceeEEEEcCCCCeEEEEeCC----CeEEEEEccCC
Q 010362 221 FSPDGQFLVSC-SFDGFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQD----GKIKVWRIRSG 295 (512)
Q Consensus 221 ~s~~~~~l~sg-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d----g~i~vwd~~~~ 295 (512)
++|||+.+... -..+.+.+.|.++.+....+.. ......++++|+|+++++.+.+ +++...+..+.
T Consensus 200 lpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~V---------dgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~ 270 (635)
T PRK02888 200 LPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMV---------DGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAER 270 (635)
T ss_pred cCCCCCEeecccceeEEEEEEECccceEEEEEEe---------CCCcccceECCCCCEEEEeccCcccCcceeeeccccC
Confidence 45666655332 2456677777776665544332 2345678899999999888642 22333332222
Q ss_pred eeeEEeccccccCeEEEEEecCCCEEEEEeCCCcEEEEeCCC-----CceeEEeeCCccceeEEEEcCCCCEEEEEeC-C
Q 010362 296 QCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKS-----GKLLKEFRGHSSYVNDAIFTNDGSRVVTASS-D 369 (512)
Q Consensus 296 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~i~d~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d 369 (512)
..+..+.. ..+ -.+.++|++...+ ++.|.+.|.++ .+.+..+.. ......+.++|||+++++++. +
T Consensus 271 d~~vvfni---~~i--ea~vkdGK~~~V~--gn~V~VID~~t~~~~~~~v~~yIPV-GKsPHGV~vSPDGkylyVanklS 342 (635)
T PRK02888 271 DWVVVFNI---ARI--EEAVKAGKFKTIG--GSKVPVVDGRKAANAGSALTRYVPV-PKNPHGVNTSPDGKYFIANGKLS 342 (635)
T ss_pred ceEEEEch---HHH--HHhhhCCCEEEEC--CCEEEEEECCccccCCcceEEEEEC-CCCccceEECCCCCEEEEeCCCC
Confidence 22222210 000 0234578776663 67899999988 345555543 445788999999999877654 8
Q ss_pred CcEEEEeCCCCceee--ecCCCCCC---CCCCceeEEEEEcCCCCCeEEEEcCCCcEEEEecCC
Q 010362 370 CTVKVWDLKSTDCLQ--TFKPPPPL---RGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQG 428 (512)
Q Consensus 370 g~i~iwd~~~~~~~~--~~~~~~~~---~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~~~~~~ 428 (512)
.++.|+|+.+.+... .+.+...+ ..........+|.+++ ..+.+..-|..+..|++..
T Consensus 343 ~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlGPLHTaFDg~G-~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 343 PTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLGPLHTAFDGRG-NAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred CcEEEEEChhhhhhhhccCCccceEEEeeccCCCcceEEECCCC-CEEEeEeecceeEEEehHH
Confidence 899999998755311 01000000 0012233455677776 6788888999999999864
No 350
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.27 E-value=0.0018 Score=62.36 Aligned_cols=217 Identities=14% Similarity=0.159 Sum_probs=114.7
Q ss_pred cCcceeEEEEcCCCCeEEEEeCCCeEEEEEccCCeeeEEeccccccCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCcee
Q 010362 262 HDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLL 341 (512)
Q Consensus 262 h~~~v~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~ 341 (512)
....+..+.++|+|+.+++++ ||...++........ ..+....++|.+.+ .+|+-...+.|.++.--+.+..
T Consensus 31 ~~~~p~~ls~npngr~v~V~g-~geY~iyt~~~~r~k------~~G~g~~~vw~~~n-~yAv~~~~~~I~I~kn~~~~~~ 102 (443)
T PF04053_consen 31 CEIYPQSLSHNPNGRFVLVCG-DGEYEIYTALAWRNK------AFGSGLSFVWSSRN-RYAVLESSSTIKIYKNFKNEVV 102 (443)
T ss_dssp -SS--SEEEE-TTSSEEEEEE-TTEEEEEETTTTEEE------EEEE-SEEEE-TSS-EEEEE-TTS-EEEEETTEE-TT
T ss_pred CCcCCeeEEECCCCCEEEEEc-CCEEEEEEccCCccc------ccCceeEEEEecCc-cEEEEECCCeEEEEEcCccccc
Confidence 455688999999999999855 788888874333321 12445668898844 5777777888999632223332
Q ss_pred EEeeCCccceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeecCCCCCCCCCCceeEEEEEcCCCCCeEEEEcCCCcE
Q 010362 342 KEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSI 421 (512)
Q Consensus 342 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i 421 (512)
..++.. ..+..+.. |..|...+.+ .|.+||..+++.+..+.. .+|..+.|++++ .+++..+ +..+
T Consensus 103 k~i~~~-~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~~i~v--------~~vk~V~Ws~~g-~~val~t-~~~i 167 (443)
T PF04053_consen 103 KSIKLP-FSVEKIFG---GNLLGVKSSD-FICFYDWETGKLIRRIDV--------SAVKYVIWSDDG-ELVALVT-KDSI 167 (443)
T ss_dssp -----S-S-EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEESS---------E-EEEEE-TTS-SEEEEE--S-SE
T ss_pred eEEcCC-cccceEEc---CcEEEEECCC-CEEEEEhhHcceeeEEec--------CCCcEEEEECCC-CEEEEEe-CCeE
Confidence 333322 12444433 7777776654 899999999999988762 247899999987 5666555 4466
Q ss_pred EEEecCCe------------EEEEeeCCcccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCeeEEeccccCCCeEEE
Q 010362 422 YIMTLQGQ------------VVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGV 489 (512)
Q Consensus 422 ~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v 489 (512)
++++.+.. ........ ...|.+.+|..+ -++++ +.. .++- +..|+. .++..-..++.=+
T Consensus 168 ~il~~~~~~~~~~~~~g~e~~f~~~~E~---~~~IkSg~W~~d-~fiYt-T~~-~lkY--l~~Ge~-~~i~~ld~~~yll 238 (443)
T PF04053_consen 168 YILKYNLEAVAAIPEEGVEDAFELIHEI---SERIKSGCWVED-CFIYT-TSN-HLKY--LVNGET-GIIAHLDKPLYLL 238 (443)
T ss_dssp EEEEE-HHHHHHBTTTB-GGGEEEEEEE----S--SEEEEETT-EEEEE--TT-EEEE--EETTEE-EEEEE-SS--EEE
T ss_pred EEEEecchhcccccccCchhceEEEEEe---cceeEEEEEEcC-EEEEE-cCC-eEEE--EEcCCc-ceEEEcCCceEEE
Confidence 77666533 23332221 234667777655 33333 333 5555 333332 1222224567777
Q ss_pred EEcCCCCeEEEEECCCeEEEe
Q 010362 490 THHPHRNLLATYGEDCTMKLW 510 (512)
Q Consensus 490 ~~~p~~~~l~s~~~dg~i~iW 510 (512)
...|+.+.+.....|+.|..+
T Consensus 239 gy~~~~~~ly~~Dr~~~v~~~ 259 (443)
T PF04053_consen 239 GYLPKENRLYLIDRDGNVISY 259 (443)
T ss_dssp EEETTTTEEEEE-TT--EEEE
T ss_pred EEEccCCEEEEEECCCCEEEE
Confidence 888877888888888888765
No 351
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=98.26 E-value=0.0044 Score=59.20 Aligned_cols=235 Identities=15% Similarity=0.160 Sum_probs=155.5
Q ss_pred ceeEEEEcCCCCeEEEEe-CCCeEEEEEccCCeeeEEeccccccCeEEEEEecCCCEEEEE-eCCCcEEEEeCCCCceeE
Q 010362 265 TVLCIEFSRDSEMLASGS-QDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILST-SFDSTARIHGLKSGKLLK 342 (512)
Q Consensus 265 ~v~~l~~s~~~~~l~s~~-~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~v~i~d~~~~~~~~ 342 (512)
....+...+++..+.... ....+...+........... ........++.++.+..++.. ..++.|.+.|..+.+...
T Consensus 32 ~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~~~-~g~~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~ 110 (381)
T COG3391 32 GPGGVAVNPDGTQVYVANSGSNDVSVIDATSNTVTQSLS-VGGVYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLG 110 (381)
T ss_pred CCceeEEcCccCEEEEEeecCceeeecccccceeeeecc-CCCccccceeeCCCCCeEEEecCCCCeEEEEcCcccceee
Confidence 456677888875444443 22245555544222222111 111445677888888755544 445899999987777776
Q ss_pred EeeCCccceeEEEEcCCCCEEEEEeC---CCcEEEEeCCCCceeeecCCCCCCCCCCceeEEEEEcCCCCCeEEEEcCCC
Q 010362 343 EFRGHSSYVNDAIFTNDGSRVVTASS---DCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTS 419 (512)
Q Consensus 343 ~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~ 419 (512)
....-. ....++++|+++.+..+.. ++++.+.|..+++......... .+ ..+++.|++...+++...++
T Consensus 111 ~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~------~P-~~~a~~p~g~~vyv~~~~~~ 182 (381)
T COG3391 111 SIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGN------TP-TGVAVDPDGNKVYVTNSDDN 182 (381)
T ss_pred Eeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCC------Cc-ceEEECCCCCeEEEEecCCC
Confidence 665333 5678999999988777665 6889999999888777743211 23 88999999977777777999
Q ss_pred cEEEEecCCeEEEEeeC---CcccCCcEEEEEECCCCCEEEEEeCC---CeEEEEEcCCCeeEEe-ccccCCCeEEEEEc
Q 010362 420 SIYIMTLQGQVVKSFSS---GKREGGDFVAACVSPKGEWIYCVGED---RNLYCFSHQSGKLEHL-MKVHEKDVIGVTHH 492 (512)
Q Consensus 420 ~i~~~~~~~~~~~~~~~---~~~~~~~~~~~~~s~~g~~l~~g~~d---g~i~iwd~~~~~~~~~-~~~h~~~v~~v~~~ 492 (512)
.+.+.|..+..+.. .. ..........+.++|+|.++++.... +.+...|..++..... ..........+..+
T Consensus 183 ~v~vi~~~~~~v~~-~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~ 261 (381)
T COG3391 183 TVSVIDTSGNSVVR-GSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSGAPRGVAVD 261 (381)
T ss_pred eEEEEeCCCcceec-cccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccCCCCceeEC
Confidence 99999988665553 11 11122334678999999988777644 5999999998887765 22211145678899
Q ss_pred CCCCeEEEEECC-CeEEE
Q 010362 493 PHRNLLATYGED-CTMKL 509 (512)
Q Consensus 493 p~~~~l~s~~~d-g~i~i 509 (512)
|++..+.+.... +.+.+
T Consensus 262 p~g~~~yv~~~~~~~V~v 279 (381)
T COG3391 262 PAGKAAYVANSQGGTVSV 279 (381)
T ss_pred CCCCEEEEEecCCCeEEE
Confidence 999887776433 44444
No 352
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.25 E-value=9.9e-05 Score=70.53 Aligned_cols=200 Identities=17% Similarity=0.217 Sum_probs=120.4
Q ss_pred eEEEEEccCCeeeEEeccccccCeEEEEEecCCCEEEEEeC---C-CcEEEEeCCCCceeEEeeCCccceeEEEEcCCCC
Q 010362 286 KIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSF---D-STARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGS 361 (512)
Q Consensus 286 ~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---d-g~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~ 361 (512)
.+.+-|.+ |.....+. .....+..-+|+|++..++..+. . ..++++|+.+++...... ..+.-....|+|||+
T Consensus 174 ~l~~~D~d-g~~~~~l~-~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~ 250 (425)
T COG0823 174 ELALGDYD-GYNQQKLT-DSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGS 250 (425)
T ss_pred eEEEEccC-CcceeEec-ccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCC
Confidence 34444443 44444444 34566777889999988765532 2 358999998886554433 222233468999998
Q ss_pred EEEEE-eCCCc--EEEEeCCCCceeeecCCCCCCCCCCceeEEEEEcCCCCCeEEEEcCCCc--EEEEecCCeEEEEeeC
Q 010362 362 RVVTA-SSDCT--VKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSS--IYIMTLQGQVVKSFSS 436 (512)
Q Consensus 362 ~l~~~-~~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~--i~~~~~~~~~~~~~~~ 436 (512)
.|+.+ ..||. |.++|+.++...+ +. ...+.-..-.|+|++..++++.+..|. |++++.++.....+..
T Consensus 251 ~l~f~~~rdg~~~iy~~dl~~~~~~~-Lt------~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~ 323 (425)
T COG0823 251 KLAFSSSRDGSPDIYLMDLDGKNLPR-LT------NGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTF 323 (425)
T ss_pred EEEEEECCCCCccEEEEcCCCCccee-cc------cCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeec
Confidence 87654 45665 5666777665222 22 122233366799999888888888776 5666666666555544
Q ss_pred CcccCCcEEEEEECCCCCEEEEEeC-CCe--EEEEEcCCCeeEEeccccCCCeEEEEEcCCCCeEE
Q 010362 437 GKREGGDFVAACVSPKGEWIYCVGE-DRN--LYCFSHQSGKLEHLMKVHEKDVIGVTHHPHRNLLA 499 (512)
Q Consensus 437 ~~~~~~~~~~~~~s~~g~~l~~g~~-dg~--i~iwd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~ 499 (512)
.... .....|+|||++++..+. +|. |.+.|+.++.....+. +......-.|.|++..+.
T Consensus 324 ~~~~---~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt-~~~~~e~ps~~~ng~~i~ 385 (425)
T COG0823 324 SGGG---NSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIRILT-STYLNESPSWAPNGRMIM 385 (425)
T ss_pred cCCC---CcCccCCCCCCEEEEEeccCCceeeEEeccCCCCcEEEcc-ccccCCCCCcCCCCceEE
Confidence 3321 227789999999988774 344 7777776665443333 122222334555554433
No 353
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.25 E-value=0.00014 Score=65.44 Aligned_cols=248 Identities=13% Similarity=0.127 Sum_probs=133.7
Q ss_pred EEecCcCceEEEEECCCCC-EEEEEeCCCeEEEEEcCCCeeeccccccccceeeccCcceeEEEEcCCC-CeEEEEeCCC
Q 010362 208 IKFGTKSHAECARFSPDGQ-FLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDS-EMLASGSQDG 285 (512)
Q Consensus 208 ~~~~h~~~v~~~~~s~~~~-~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~-~~l~s~~~dg 285 (512)
+-.+|...|..++|||..+ ++..++.+.+|+|.|+.+........ .| ..+++++|.-|. +++..|..+|
T Consensus 188 ~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~--------a~-~~~wSC~wDlde~h~IYaGl~nG 258 (463)
T KOG1645|consen 188 ILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYI--------AY-NQIWSCCWDLDERHVIYAGLQNG 258 (463)
T ss_pred cccccchhhhhhccCccccceeeeeccCceEEEEecccceeeehee--------cc-CCceeeeeccCCcceeEEeccCc
Confidence 3347888999999999776 78889999999999999887665443 24 789999999865 5677778899
Q ss_pred eEEEEEccCCee-eEEecc-ccccCeEEEEEe------cCCCEEEEEeCCCcEEEEeCCC--CceeEEee-CCccceeEE
Q 010362 286 KIKVWRIRSGQC-LRRLER-AHSEGVTSLVFS------RDGSQILSTSFDSTARIHGLKS--GKLLKEFR-GHSSYVNDA 354 (512)
Q Consensus 286 ~i~vwd~~~~~~-~~~~~~-~~~~~i~~~~~~------~~~~~l~~~~~dg~v~i~d~~~--~~~~~~~~-~~~~~v~~~ 354 (512)
.|.|||++..+- +..+.. -...+|..++.- +.|..++..+.+ ...|.+.- +....... +..+.+.++
T Consensus 259 ~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlele~pG~cism 336 (463)
T KOG1645|consen 259 MVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLELEPPGICISM 336 (463)
T ss_pred eEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccccCCCcceeee
Confidence 999999986542 222211 123344444432 234444444432 34555432 11111111 124556666
Q ss_pred EEcCCCCEEEEEeCC-C------cEEE-EeCCCCceeeecCCCCC--CCCCCceeEEEEEcCCCCCeEEEEcCCCcEEEE
Q 010362 355 IFTNDGSRVVTASSD-C------TVKV-WDLKSTDCLQTFKPPPP--LRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIM 424 (512)
Q Consensus 355 ~~~~~~~~l~~~~~d-g------~i~i-wd~~~~~~~~~~~~~~~--~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~~ 424 (512)
.+.+..+.++..... . .|-. -|.++|..+..-..... ....-..-..+.-.+++.-++.+++....+.+|
T Consensus 337 qy~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~ 416 (463)
T KOG1645|consen 337 QYHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQ 416 (463)
T ss_pred eecCccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCcceeEEe
Confidence 666644544433321 0 0100 12222322221111100 000001112223334443455566677889999
Q ss_pred ecCCe-EEEEeeCCcccCCcEEEEEE-CCCCC-EEEEEeCCCeEEEEEcC
Q 010362 425 TLQGQ-VVKSFSSGKREGGDFVAACV-SPKGE-WIYCVGEDRNLYCFSHQ 471 (512)
Q Consensus 425 ~~~~~-~~~~~~~~~~~~~~~~~~~~-s~~g~-~l~~g~~dg~i~iwd~~ 471 (512)
|.... .+..+... .++..++. .-+|. ||++- .|..++||..+
T Consensus 417 D~~s~evvQ~l~~~----epv~Dicp~~~n~~syLa~L-Td~~v~Iyk~e 461 (463)
T KOG1645|consen 417 DPHSFEVVQTLALS----EPVLDICPNDTNGSSYLALL-TDDRVHIYKNE 461 (463)
T ss_pred ccchhheeeecccC----cceeecceeecCCcchhhhe-ecceEEEEecC
Confidence 99843 44443332 34666665 33343 44444 46677777543
No 354
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=98.23 E-value=0.002 Score=59.45 Aligned_cols=226 Identities=17% Similarity=0.258 Sum_probs=120.4
Q ss_pred EEEEcCCCCeEEEEeC-C--CeEEEEEccCCeeeEEeccccccCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEe
Q 010362 268 CIEFSRDSEMLASGSQ-D--GKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEF 344 (512)
Q Consensus 268 ~l~~s~~~~~l~s~~~-d--g~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~ 344 (512)
.=+|.+||+.|+.++. | ..+.+.|+.+++..+-.. +.........++|+++.++....+..|.-.|+++.+....+
T Consensus 40 ~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTd-g~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy 118 (386)
T PF14583_consen 40 QNCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTD-GPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVY 118 (386)
T ss_dssp S--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE----SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEE
T ss_pred CCCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECcc-CCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEE
Confidence 3357889987776655 4 467788999988665544 22222335667788888877766678999999998776666
Q ss_pred eCCccceeEEEE--cCCCCEEEEEe----------------------CCCcEEEEeCCCCceeeecCCCCCCCCCCceeE
Q 010362 345 RGHSSYVNDAIF--TNDGSRVVTAS----------------------SDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVN 400 (512)
Q Consensus 345 ~~~~~~v~~~~~--~~~~~~l~~~~----------------------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~ 400 (512)
......+-...| +.++..++..- -...|.-.|+.+|+....+. ....+.
T Consensus 119 ~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~-------~~~wlg 191 (386)
T PF14583_consen 119 EVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFE-------DTDWLG 191 (386)
T ss_dssp E--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEE-------ESS-EE
T ss_pred ECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEe-------cCcccc
Confidence 655555544555 34555544321 11245555666665444433 234667
Q ss_pred EEEEcCCCCCeEEEEcC------CCcEEEEecCCeEEEEeeCCcccCCcEEEEEECCCCCEEEEEe-----CCCeEEEEE
Q 010362 401 SVHLFPKNPDHIVVCNK------TSSIYIMTLQGQVVKSFSSGKREGGDFVAACVSPKGEWIYCVG-----EDRNLYCFS 469 (512)
Q Consensus 401 ~~~~~~~~~~~l~~~~~------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~-----~dg~i~iwd 469 (512)
.+.++|.++.+++.|-. |.+|.+.+.++...+.+.... ....+..=.|+|||..|..-+ .+..|.-+|
T Consensus 192 H~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~-~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d 270 (386)
T PF14583_consen 192 HVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRM-EGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYD 270 (386)
T ss_dssp EEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS----TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-
T ss_pred CcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCC-CCcccccccccCCCCEEEEEeecCCCCceEEEeeC
Confidence 88999999888888764 346767777777776665543 244455667899999876543 244678888
Q ss_pred cCCCeeEEeccccCCCeEEEEEcCCCCeEEEEECC
Q 010362 470 HQSGKLEHLMKVHEKDVIGVTHHPHRNLLATYGED 504 (512)
Q Consensus 470 ~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~~~d 504 (512)
..+++....... .....+.-++|+.+++-=|.|
T Consensus 271 ~~t~~~~~~~~~--p~~~H~~ss~Dg~L~vGDG~d 303 (386)
T PF14583_consen 271 PDTGERRRLMEM--PWCSHFMSSPDGKLFVGDGGD 303 (386)
T ss_dssp TTT--EEEEEEE---SEEEEEE-TTSSEEEEEE--
T ss_pred CCCCCceEEEeC--CceeeeEEcCCCCEEEecCCC
Confidence 888865443322 234456667899888755544
No 355
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=98.21 E-value=0.0029 Score=61.63 Aligned_cols=243 Identities=16% Similarity=0.199 Sum_probs=135.0
Q ss_pred eEEEEECCCCCEEEEE-eCCC----eEEEEEcCCCeeeccccccccceeeccCcceeEEEEcCCCCeEEEEeCCC-----
Q 010362 216 AECARFSPDGQFLVSC-SFDG----FIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQDG----- 285 (512)
Q Consensus 216 v~~~~~s~~~~~l~sg-~~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg----- 285 (512)
+...++||+|+++|.+ +..| .++++|+.+++..... + .......+.|.++++.|+....+.
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~-------i--~~~~~~~~~W~~d~~~~~y~~~~~~~~~~ 196 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDG-------I--ENPKFSSVSWSDDGKGFFYTRFDEDQRTS 196 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEE-------E--EEEESEEEEECTTSSEEEEEECSTTTSS-
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCc-------c--cccccceEEEeCCCCEEEEEEeCcccccc
Confidence 4467899999999866 3334 5999999999765421 1 111123499999988877665433
Q ss_pred ------eEEEEEccCCeee--EEeccccccC-eEEEEEecCCCEEEEEeCC----CcEEEEeCCCC----ceeEEeeC-C
Q 010362 286 ------KIKVWRIRSGQCL--RRLERAHSEG-VTSLVFSRDGSQILSTSFD----STARIHGLKSG----KLLKEFRG-H 347 (512)
Q Consensus 286 ------~i~vwd~~~~~~~--~~~~~~~~~~-i~~~~~~~~~~~l~~~~~d----g~v~i~d~~~~----~~~~~~~~-~ 347 (512)
.|+.|++.++..- ..+....... ...+..++|+++++..+.. ..+++.|+..+ .....+.. .
T Consensus 197 ~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~ 276 (414)
T PF02897_consen 197 DSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPRE 276 (414)
T ss_dssp CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESS
T ss_pred cCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCC
Confidence 3788887766432 3333222333 6788899999998765432 35788888764 22333332 3
Q ss_pred ccceeEEEEcCCCCEEEEEeC---CCcEEEEeCCCCce---eeecCCCCCCCCCCceeEEEEEcCCCCCeEEEEcCCC--
Q 010362 348 SSYVNDAIFTNDGSRVVTASS---DCTVKVWDLKSTDC---LQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTS-- 419 (512)
Q Consensus 348 ~~~v~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~---~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~-- 419 (512)
.+....+... .+.+++.... ++.|.-.++..... ...+.+. .....+..+... +..+++....++
T Consensus 277 ~~~~~~v~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~----~~~~~l~~~~~~--~~~Lvl~~~~~~~~ 349 (414)
T PF02897_consen 277 DGVEYYVDHH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPE----DEDVSLEDVSLF--KDYLVLSYRENGSS 349 (414)
T ss_dssp SS-EEEEEEE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE------SSSEEEEEEEEE--TTEEEEEEEETTEE
T ss_pred CceEEEEEcc-CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCC----CCceeEEEEEEE--CCEEEEEEEECCcc
Confidence 3323333333 4444444322 45676677776542 1122211 112245555543 324555554444
Q ss_pred cEEEEecC-CeEEEEeeCCcccCCcEEEEEECCCCCEEEEE--e--CCCeEEEEEcCCCeeE
Q 010362 420 SIYIMTLQ-GQVVKSFSSGKREGGDFVAACVSPKGEWIYCV--G--EDRNLYCFSHQSGKLE 476 (512)
Q Consensus 420 ~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g--~--~dg~i~iwd~~~~~~~ 476 (512)
.|.++++. +.......... .+.+..+...++++.+... + .-+.++.||+.+++..
T Consensus 350 ~l~v~~~~~~~~~~~~~~p~--~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~ 409 (414)
T PF02897_consen 350 RLRVYDLDDGKESREIPLPE--AGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGELT 409 (414)
T ss_dssp EEEEEETT-TEEEEEEESSS--SSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCEE
T ss_pred EEEEEECCCCcEEeeecCCc--ceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEE
Confidence 47888888 66666655543 3445555555666544332 2 3467889999888754
No 356
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.20 E-value=0.00012 Score=69.99 Aligned_cols=159 Identities=26% Similarity=0.232 Sum_probs=103.2
Q ss_pred cCcCceEEEEECCCCCEEEEEe---CC-CeEEEEEcCCCeeeccccccccceeeccCcceeEEEEcCCCCeEEEEe-CCC
Q 010362 211 GTKSHAECARFSPDGQFLVSCS---FD-GFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGS-QDG 285 (512)
Q Consensus 211 ~h~~~v~~~~~s~~~~~l~sg~---~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~-~dg 285 (512)
.-...+..-+|+|++..++..+ .. ..+.++++++++...... ..+.-..-+|+|||+.|+.+. .||
T Consensus 190 ~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~---------~~g~~~~P~fspDG~~l~f~~~rdg 260 (425)
T COG0823 190 DSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN---------FNGNNGAPAFSPDGSKLAFSSSRDG 260 (425)
T ss_pred ccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec---------cCCccCCccCCCCCCEEEEEECCCC
Confidence 3445566788999998877653 22 469999999887655443 233445668999999887765 355
Q ss_pred e--EEEEEccCCeeeEEeccccccCeEEEEEecCCCEEEEEeCC-C--cEEEEeCCCCceeEEeeCCccceeEEEEcCCC
Q 010362 286 K--IKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFD-S--TARIHGLKSGKLLKEFRGHSSYVNDAIFTNDG 360 (512)
Q Consensus 286 ~--i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-g--~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~ 360 (512)
. |.++|+.++.. ..+. ...+.-..-.|+|||+.++..+.. | .|.++|.+.+.. ..+......-..-.|+|||
T Consensus 261 ~~~iy~~dl~~~~~-~~Lt-~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~~~~~~~~p~~SpdG 337 (425)
T COG0823 261 SPDIYLMDLDGKNL-PRLT-NGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTFSGGGNSNPVWSPDG 337 (425)
T ss_pred CccEEEEcCCCCcc-eecc-cCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eEeeccCCCCcCccCCCCC
Confidence 4 66678776663 3343 223333467899999999877653 3 577778766554 3333332223367899999
Q ss_pred CEEEEEeCC-Cc--EEEEeCCCCc
Q 010362 361 SRVVTASSD-CT--VKVWDLKSTD 381 (512)
Q Consensus 361 ~~l~~~~~d-g~--i~iwd~~~~~ 381 (512)
++++..+.. |. |.+.|+.++.
T Consensus 338 ~~i~~~~~~~g~~~i~~~~~~~~~ 361 (425)
T COG0823 338 DKIVFESSSGGQWDIDKNDLASGG 361 (425)
T ss_pred CEEEEEeccCCceeeEEeccCCCC
Confidence 998877643 44 5666665554
No 357
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=98.19 E-value=0.0013 Score=61.47 Aligned_cols=219 Identities=15% Similarity=0.194 Sum_probs=126.1
Q ss_pred CeEEEEEcCCCeeeccccccccceeeccCcceeEEEEcCC----CCeEEEEeC----------CCeEEEEEccCC-----
Q 010362 235 GFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRD----SEMLASGSQ----------DGKIKVWRIRSG----- 295 (512)
Q Consensus 235 g~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~----~~~l~s~~~----------dg~i~vwd~~~~----- 295 (512)
..|++.|..+.+....+...+.+ +...+..+.+..+ ..+|++|+. .|.|.++++...
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~E----~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~ 77 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPNE----HVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNF 77 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETTE----EEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----
T ss_pred cEEEEEeCCCCeEEEEEECCCCc----eEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccce
Confidence 35788887777766555543211 2222333444432 467777753 288999999884
Q ss_pred eeeEEeccccccCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCc-eeEEeeC-CccceeEEEEcCCCCEEEEEeCCCcEE
Q 010362 296 QCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGK-LLKEFRG-HSSYVNDAIFTNDGSRVVTASSDCTVK 373 (512)
Q Consensus 296 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~-~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~ 373 (512)
+..........++|++++-. ++ +++++. ++.|.+|++...+ ....-.. ....+.++... +++++.|+....+.
T Consensus 78 ~l~~i~~~~~~g~V~ai~~~-~~-~lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~ 152 (321)
T PF03178_consen 78 KLKLIHSTEVKGPVTAICSF-NG-RLVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVS 152 (321)
T ss_dssp EEEEEEEEEESS-EEEEEEE-TT-EEEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEE
T ss_pred EEEEEEEEeecCcceEhhhh-CC-EEEEee-cCEEEEEEccCcccchhhheecceEEEEEEecc--ccEEEEEEcccCEE
Confidence 33322233467889999877 34 455554 5889999998777 3332221 22345555554 56999999888888
Q ss_pred EEeCCC-CceeeecCCCCCCCCCCceeEEEEEcCCCCCeEEEEcCCCcEEEEecCC--------e-EEEEeeCCcccCCc
Q 010362 374 VWDLKS-TDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQG--------Q-VVKSFSSGKREGGD 443 (512)
Q Consensus 374 iwd~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~~~~~~--------~-~~~~~~~~~~~~~~ 443 (512)
++..+. ......+... .....++++.+.+++ +.+++++.+|.+.++.... . .+....... .+..
T Consensus 153 ~~~~~~~~~~l~~va~d----~~~~~v~~~~~l~d~-~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~-lg~~ 226 (321)
T PF03178_consen 153 LLRYDEENNKLILVARD----YQPRWVTAAEFLVDE-DTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFH-LGDI 226 (321)
T ss_dssp EEEEETTTE-EEEEEEE----SS-BEEEEEEEE-SS-SEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE--SS-
T ss_pred EEEEEccCCEEEEEEec----CCCccEEEEEEecCC-cEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEE-CCCc
Confidence 875543 2212222111 124568888888776 5999999999999988762 1 222222211 1344
Q ss_pred EEEE---EECC--CCC------EEEEEeCCCeEEEE
Q 010362 444 FVAA---CVSP--KGE------WIYCVGEDRNLYCF 468 (512)
Q Consensus 444 ~~~~---~~s~--~g~------~l~~g~~dg~i~iw 468 (512)
++++ ++.| .+. .++.++.+|.|.+.
T Consensus 227 v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l 262 (321)
T PF03178_consen 227 VNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGVL 262 (321)
T ss_dssp EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred cceEEEEEeeecCCCCcccccceEEEEecCCEEEEE
Confidence 6666 4445 222 48888889988844
No 358
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.17 E-value=0.0016 Score=56.86 Aligned_cols=174 Identities=9% Similarity=0.130 Sum_probs=124.6
Q ss_pred cCcceeEEEEcCCCCeEEEEeCCCeEEEEEccCCeeeEEeccccccCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCcee
Q 010362 262 HDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLL 341 (512)
Q Consensus 262 h~~~v~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~ 341 (512)
-...+.++.|+|+.+.|++......-.|+=..+|+.+.++....-.....+.+..+|.+.++--.++.+.++.+.....+
T Consensus 84 ~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~~ 163 (316)
T COG3204 84 ETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADTTV 163 (316)
T ss_pred ccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCccE
Confidence 44559999999999999888888877787778899999987555566778888888877777777888888877554222
Q ss_pred EEe---------eCC-ccceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeecCCCCCCC----CCCceeEEEEEcCC
Q 010362 342 KEF---------RGH-SSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLR----GGDASVNSVHLFPK 407 (512)
Q Consensus 342 ~~~---------~~~-~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~----~~~~~i~~~~~~~~ 407 (512)
... ..+ +.....++|+|....|+.+-+-.-+.||.+................ -.-..+.++.+.+.
T Consensus 164 ~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~~~ 243 (316)
T COG3204 164 ISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFNAI 243 (316)
T ss_pred EeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccceecCC
Confidence 111 112 5567889999999999998888888888776332111111111000 11235778888888
Q ss_pred CCCeEEEEcCCCcEEEEecCCeEEEEee
Q 010362 408 NPDHIVVCNKTSSIYIMTLQGQVVKSFS 435 (512)
Q Consensus 408 ~~~~l~~~~~~~~i~~~~~~~~~~~~~~ 435 (512)
...+++.+..++.+.-.|..|.....+.
T Consensus 244 ~~~LLVLS~ESr~l~Evd~~G~~~~~ls 271 (316)
T COG3204 244 TNSLLVLSDESRRLLEVDLSGEVIELLS 271 (316)
T ss_pred CCcEEEEecCCceEEEEecCCCeeeeEE
Confidence 8899999999999999999988655444
No 359
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.12 E-value=1.4e-05 Score=75.96 Aligned_cols=94 Identities=15% Similarity=0.233 Sum_probs=77.7
Q ss_pred CceEEEEECCCCCEEEEEeCCCeEEEEEcCCCeeeccccccccceeeccCccee-EEEEcCCCCeEEEEeCCCeEEEEEc
Q 010362 214 SHAECARFSPDGQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHDETVL-CIEFSRDSEMLASGSQDGKIKVWRI 292 (512)
Q Consensus 214 ~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~-~l~~s~~~~~l~s~~~dg~i~vwd~ 292 (512)
..|.-+.|+|.-.++|++..+|.|.+..++ .+.+..++. |...++ +++|.|||+.||+|-.||+|++.|+
T Consensus 21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~--------p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dv 91 (665)
T KOG4640|consen 21 INIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPI--------PGENVTASLCWRPDGKLLAVGFKDGTIRLHDV 91 (665)
T ss_pred cceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccC--------CCCccceeeeecCCCCEEEEEecCCeEEEEEc
Confidence 347789999999999999999999998877 444444433 666666 9999999999999999999999999
Q ss_pred cCCeeeEEeccccccCeEEEEEec
Q 010362 293 RSGQCLRRLERAHSEGVTSLVFSR 316 (512)
Q Consensus 293 ~~~~~~~~~~~~~~~~i~~~~~~~ 316 (512)
++|..+......-..+|.++-|.+
T Consensus 92 e~~~~l~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 92 EKGGRLVSFLFSVETDISKGIWDR 115 (665)
T ss_pred cCCCceeccccccccchheeeccc
Confidence 999988875445677888888874
No 360
>KOG0396 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.11 E-value=4.8e-05 Score=67.63 Aligned_cols=117 Identities=15% Similarity=0.086 Sum_probs=88.4
Q ss_pred chhhHHHHHHHHHHhcChHHHHHHHHhhcCcc----ccccccHHHHHhhhccCCchhhhhhhccc-----cCChhHHHHH
Q 010362 6 EARDVIKIVLQFCKENSLQQTFQTLQNECQVS----LNTVDSIETFVADINSGRWDAILPQVAQL-----KLPRNKLEDL 76 (512)
Q Consensus 6 ~~~e~~~li~q~L~e~G~~~t~~~l~~Es~~~----~~~~~~~~~~~~~i~~g~w~~~~~~l~~~-----~~~~~~~~~l 76 (512)
.+.-+.|+|..||.-+||-+||..|-++|.+. ++-...+...+++|++|+...++.-.+.- +.....-+.+
T Consensus 114 ~r~~l~r~vvdhmlr~gy~~~A~~L~K~s~ledlvD~Dv~~~~~~I~~sll~~~l~~~Lswc~ehk~~LkK~~S~lEf~l 193 (389)
T KOG0396|consen 114 PRNKLDRFVVDHMLRNGYFGAAVLLGKKSQLEDLVDSDVYKRAYGIRDSLLAGELEPALSWCKEHKVELKKEESSLEFQL 193 (389)
T ss_pred HHHHHHHHHHHHHHHcCchhHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccchhhhHH
Confidence 45678999999999999999999999999984 11122455678899999987776643322 1222344668
Q ss_pred HHHHHHHHHHcCChHHHHHHHHhcchhhhcccCChHHHHHHHHHhccc
Q 010362 77 YEQIVLEMIELRELDTARAILRQTQAMGVMKQEQPERYLRLEHLLVRT 124 (512)
Q Consensus 77 ~~~~~~e~l~~~~~~~a~~~lr~~~~~~~~~~~~~~~~~~l~~ll~~~ 124 (512)
..|.|+||++.+++..|+...|+...+ ...++++.+.....++.-.
T Consensus 194 RlQefIELi~~~~~~~Ai~~akk~f~~--~~~~~~~~Lk~a~g~laF~ 239 (389)
T KOG0396|consen 194 RLQEFIELIKVDNYDKAIAFAKKHFAP--WAKSHKSDLKLAMGLLAFP 239 (389)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhh--hhhhhHHHHHHHHHhhcCc
Confidence 889999999999999999999998877 4446666776666666543
No 361
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=98.11 E-value=0.0032 Score=60.51 Aligned_cols=244 Identities=13% Similarity=0.107 Sum_probs=120.5
Q ss_pred cccceEEEecCcCceEEEEECCCCCEEEEEeCCCeEEEEEcCCCeeeccccccccceeeccCcceeEEEEcCCCCeEEEE
Q 010362 202 TTLSHTIKFGTKSHAECARFSPDGQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASG 281 (512)
Q Consensus 202 ~~~~~~~~~~h~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~ 281 (512)
+....++...+ +.|.++.|+.+.+++ +-..||.+++||+.... ...+.. ......-....+....+..+|-.++
T Consensus 70 G~ll~~i~w~~-~~iv~~~wt~~e~Lv-vV~~dG~v~vy~~~G~~-~fsl~~-~i~~~~v~e~~i~~~~~~~~GivvL-- 143 (410)
T PF04841_consen 70 GKLLSSIPWDS-GRIVGMGWTDDEELV-VVQSDGTVRVYDLFGEF-QFSLGE-EIEEEKVLECRIFAIWFYKNGIVVL-- 143 (410)
T ss_pred CCEeEEEEECC-CCEEEEEECCCCeEE-EEEcCCEEEEEeCCCce-eechhh-hccccCcccccccccccCCCCEEEE--
Confidence 34455566666 889999999866555 55679999999986333 111110 0111111222333334444553333
Q ss_pred eCCCeEEEEEccCCe-eeEEeccccccCeE---------E-EEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeeCCccc
Q 010362 282 SQDGKIKVWRIRSGQ-CLRRLERAHSEGVT---------S-LVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSY 350 (512)
Q Consensus 282 ~~dg~i~vwd~~~~~-~~~~~~~~~~~~i~---------~-~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~ 350 (512)
..++.+.+.+-.... ..+.+. .-..... . ..++.+....+....++.+.+.+-...+. +. ..++
T Consensus 144 t~~~~~~~v~n~~~~~~~~~~~-~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~---i~-~~~~ 218 (410)
T PF04841_consen 144 TGNNRFYVVNNIDEPVKLRRLP-EIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ---ID-SDGP 218 (410)
T ss_pred CCCCeEEEEeCccccchhhccc-cCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccccc---cc-CCCC
Confidence 334444443322211 111111 0000000 0 22333444444444455555444322111 21 2357
Q ss_pred eeEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeecCCCCCCCCCCceeEEEEEcCCCCCeEEEEcCCCcEEEEecCCeE
Q 010362 351 VNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQV 430 (512)
Q Consensus 351 v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~ 430 (512)
+..++.||++++++.-..+|.+.+.+..-.+....+... .......+.|+.++ ..++.. ...+.+....+.
T Consensus 219 i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~-----~~~~p~~~~WCG~d-av~l~~--~~~l~lvg~~~~- 289 (410)
T PF04841_consen 219 IIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTD-----SKSPPKQMAWCGND-AVVLSW--EDELLLVGPDGD- 289 (410)
T ss_pred eEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecC-----cCCCCcEEEEECCC-cEEEEe--CCEEEEECCCCC-
Confidence 999999999999999999999999876655555444422 22345566666543 222221 233433332211
Q ss_pred EEEeeCCcccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCeeEEeccc
Q 010362 431 VKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKV 481 (512)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~ 481 (512)
.+.|.-++..++..-.|| ++|..-..-+.+..++.
T Consensus 290 ---------------~~~~~~~~~~~l~~E~DG-~riit~~~~~~l~~Vp~ 324 (410)
T PF04841_consen 290 ---------------SISFWYDGPVILVSEIDG-VRIITSTSHEFLQRVPD 324 (410)
T ss_pred ---------------ceEEeccCceEEeccCCc-eEEEeCCceEEEEECCH
Confidence 123333333344444455 77776666666655543
No 362
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.10 E-value=0.0014 Score=57.56 Aligned_cols=202 Identities=14% Similarity=0.208 Sum_probs=110.2
Q ss_pred ccccCeEEEEEecCCC-EEEEEeCCCcEEEEeCCCCceeEEeeCC-ccceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCc
Q 010362 304 AHSEGVTSLVFSRDGS-QILSTSFDSTARIHGLKSGKLLKEFRGH-SSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTD 381 (512)
Q Consensus 304 ~~~~~i~~~~~~~~~~-~l~~~~~dg~v~i~d~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 381 (512)
+-...++.++|+|+.+ ++++....+.|..++. +|+.++.+.-. .+..-.+++..++.++++.-.++.+.++++....
T Consensus 19 g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~ 97 (248)
T PF06977_consen 19 GILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTIDDDT 97 (248)
T ss_dssp T--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE----
T ss_pred CccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEeccc
Confidence 3445699999999765 5555666778888886 58888877643 3458889998888777766668999999884321
Q ss_pred ----e--eeecCCCCCCCCCCceeEEEEEcCCCCCeEEEEcCCCcEEEEecCC----eEEEEe-----eCCcccCCcEEE
Q 010362 382 ----C--LQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQG----QVVKSF-----SSGKREGGDFVA 446 (512)
Q Consensus 382 ----~--~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~~~~~~----~~~~~~-----~~~~~~~~~~~~ 446 (512)
. ...+..... ......+-.++|.|.+..++++ .......++.+++ ...... .........+..
T Consensus 98 ~~~~~~~~~~~~l~~~-~~~N~G~EGla~D~~~~~L~v~-kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~ 175 (248)
T PF06977_consen 98 TSLDRADVQKISLGFP-NKGNKGFEGLAYDPKTNRLFVA-KERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSG 175 (248)
T ss_dssp TT--EEEEEEEE---S----SS--EEEEEETTTTEEEEE-EESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---E
T ss_pred cccchhhceEEecccc-cCCCcceEEEEEcCCCCEEEEE-eCCCChhhEEEccccCccceeeccccccccccceeccccc
Confidence 1 122221111 2345678999999988555554 4444455555543 111111 101112345778
Q ss_pred EEECCC-CCEEEEEeCCCeEEEEEcCCCeeEEeccccC---------CCeEEEEEcCCCCeEEEEECCCeEEEe
Q 010362 447 ACVSPK-GEWIYCVGEDRNLYCFSHQSGKLEHLMKVHE---------KDVIGVTHHPHRNLLATYGEDCTMKLW 510 (512)
Q Consensus 447 ~~~s~~-g~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~---------~~v~~v~~~p~~~~l~s~~~dg~i~iW 510 (512)
++++|. |.+++.......|..+| .+|+++..+.-.. ...-.|+|.++|++.++ +.-+..+++
T Consensus 176 l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIv-sEpNlfy~f 247 (248)
T PF06977_consen 176 LSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIV-SEPNLFYRF 247 (248)
T ss_dssp EEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEE-ETTTEEEEE
T ss_pred eEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEE-cCCceEEEe
Confidence 888886 55666666888999999 6777766543222 23568999999976655 455555544
No 363
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=98.09 E-value=0.0012 Score=61.68 Aligned_cols=213 Identities=18% Similarity=0.173 Sum_probs=128.5
Q ss_pred CeEEEEEccCCeeeEEeccccccCeEEEEEec-------CCCEEEEEeC---------C-CcEEEEeCCCC----ceeEE
Q 010362 285 GKIKVWRIRSGQCLRRLERAHSEGVTSLVFSR-------DGSQILSTSF---------D-STARIHGLKSG----KLLKE 343 (512)
Q Consensus 285 g~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~-------~~~~l~~~~~---------d-g~v~i~d~~~~----~~~~~ 343 (512)
+.|++.|..+.+.+.++.......+.+++... ...+|++|+. . |.|.++++... ..+..
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~ 81 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL 81 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence 36888898888877777655555566555433 2467777753 2 88999999874 12222
Q ss_pred e--eCCccceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCc-eeeecCCCCCCCCCCceeEEEEEcCCCCCeEEEEcCCCc
Q 010362 344 F--RGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTD-CLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSS 420 (512)
Q Consensus 344 ~--~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~ 420 (512)
+ ....++|++++-- ++ .++++. ++.|.+|++...+ ....-... ....+.++.... +++++++....
T Consensus 82 i~~~~~~g~V~ai~~~-~~-~lv~~~-g~~l~v~~l~~~~~l~~~~~~~-----~~~~i~sl~~~~---~~I~vgD~~~s 150 (321)
T PF03178_consen 82 IHSTEVKGPVTAICSF-NG-RLVVAV-GNKLYVYDLDNSKTLLKKAFYD-----SPFYITSLSVFK---NYILVGDAMKS 150 (321)
T ss_dssp EEEEEESS-EEEEEEE-TT-EEEEEE-TTEEEEEEEETTSSEEEEEEE------BSSSEEEEEEET---TEEEEEESSSS
T ss_pred EEEEeecCcceEhhhh-CC-EEEEee-cCEEEEEEccCcccchhhheec-----ceEEEEEEeccc---cEEEEEEcccC
Confidence 2 2246789888776 33 455444 4789999998877 33222211 122556665553 68999999888
Q ss_pred EEEEecC--CeEEEEeeCCcccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCC-------C--eeEEecccc-CCCeEE
Q 010362 421 IYIMTLQ--GQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQS-------G--KLEHLMKVH-EKDVIG 488 (512)
Q Consensus 421 i~~~~~~--~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~dg~i~iwd~~~-------~--~~~~~~~~h-~~~v~~ 488 (512)
+.++..+ +..+....... ....++++.+-++++.++++..+|.+.++.... + ++......| ...|++
T Consensus 151 v~~~~~~~~~~~l~~va~d~-~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~ 229 (321)
T PF03178_consen 151 VSLLRYDEENNKLILVARDY-QPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNS 229 (321)
T ss_dssp EEEEEEETTTE-EEEEEEES-S-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEE
T ss_pred EEEEEEEccCCEEEEEEecC-CCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEECCCccce
Confidence 8887554 44344443322 244577888876667999999999999998763 2 233233333 456777
Q ss_pred E---EEcCC--C------CeEEEEECCCeEEE
Q 010362 489 V---THHPH--R------NLLATYGEDCTMKL 509 (512)
Q Consensus 489 v---~~~p~--~------~~l~s~~~dg~i~i 509 (512)
+ ++.|. + ..++-++.+|.|.+
T Consensus 230 ~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~ 261 (321)
T PF03178_consen 230 FRRGSLIPRSGSSESPNRPQILYGTVDGSIGV 261 (321)
T ss_dssp EEE--SS--SSSS-TTEEEEEEEEETTS-EEE
T ss_pred EEEEEeeecCCCCcccccceEEEEecCCEEEE
Confidence 7 55552 2 24778889998874
No 364
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=98.09 E-value=0.0026 Score=57.98 Aligned_cols=225 Identities=12% Similarity=0.098 Sum_probs=132.4
Q ss_pred EEECCCCC-EEEEEeCCCeEEEEEcCCCeeeccccccccceeeccCcceeEEEEcCCCCeEEEEeCCCeEEEEEccCCee
Q 010362 219 ARFSPDGQ-FLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQC 297 (512)
Q Consensus 219 ~~~s~~~~-~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~ 297 (512)
-.|.++.. ++.+--..+.|.-|+..+++... +. +...+.++..-..+..|+++.. .+.+++.+++..
T Consensus 30 P~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~---------~~-~p~~~~~~~~~d~~g~Lv~~~~--g~~~~~~~~~~~ 97 (307)
T COG3386 30 PVWDPDRGALLWVDILGGRIHRLDPETGKKRV---------FP-SPGGFSSGALIDAGGRLIACEH--GVRLLDPDTGGK 97 (307)
T ss_pred ccCcCCCCEEEEEeCCCCeEEEecCCcCceEE---------EE-CCCCcccceeecCCCeEEEEcc--ccEEEeccCCce
Confidence 35667666 44455567888889887664321 11 3445566665555666666643 467777766655
Q ss_pred eEEecc----ccccCeEEEEEecCCCEEEEEeC-----------CCcEEEEeCCCCceeEEeeCCccceeEEEEcCCCCE
Q 010362 298 LRRLER----AHSEGVTSLVFSRDGSQILSTSF-----------DSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSR 362 (512)
Q Consensus 298 ~~~~~~----~~~~~i~~~~~~~~~~~l~~~~~-----------dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 362 (512)
+..+.. ......+.+...|+|.+.+.... -|.++.+|. .+..++.+..+-..-+.++||||++.
T Consensus 98 ~t~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~t 176 (307)
T COG3386 98 ITLLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKT 176 (307)
T ss_pred eEEeccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCCCE
Confidence 333221 11245678888899876654433 134555554 56666666666666789999999988
Q ss_pred EEEEeCC-CcEEEEeCCC--CceeeecCCCCCCCCCCceeEEEEEcCCCCCeEEEEcCC-CcEEEEecCCeEEEEeeCCc
Q 010362 363 VVTASSD-CTVKVWDLKS--TDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKT-SSIYIMTLQGQVVKSFSSGK 438 (512)
Q Consensus 363 l~~~~~d-g~i~iwd~~~--~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~-~~i~~~~~~~~~~~~~~~~~ 438 (512)
++.+... +.|.-|++.. +..... ..........+....++...++ .+.+++... +.|..|+.+++....+....
T Consensus 177 ly~aDT~~~~i~r~~~d~~~g~~~~~-~~~~~~~~~~G~PDG~~vDadG-~lw~~a~~~g~~v~~~~pdG~l~~~i~lP~ 254 (307)
T COG3386 177 LYVADTPANRIHRYDLDPATGPIGGR-RGFVDFDEEPGLPDGMAVDADG-NLWVAAVWGGGRVVRFNPDGKLLGEIKLPV 254 (307)
T ss_pred EEEEeCCCCeEEEEecCcccCccCCc-ceEEEccCCCCCCCceEEeCCC-CEEEecccCCceEEEECCCCcEEEEEECCC
Confidence 8777654 7788887753 111111 0000011123444556666555 444344444 38999999988887777653
Q ss_pred ccCCcEEEEEE-CCCCCEEEEEeC
Q 010362 439 REGGDFVAACV-SPKGEWIYCVGE 461 (512)
Q Consensus 439 ~~~~~~~~~~~-s~~g~~l~~g~~ 461 (512)
..+++++| .|+.+.|++.+.
T Consensus 255 ---~~~t~~~FgG~~~~~L~iTs~ 275 (307)
T COG3386 255 ---KRPTNPAFGGPDLNTLYITSA 275 (307)
T ss_pred ---CCCccceEeCCCcCEEEEEec
Confidence 33566777 667676665553
No 365
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=98.01 E-value=0.0037 Score=57.05 Aligned_cols=221 Identities=16% Similarity=0.145 Sum_probs=134.4
Q ss_pred EEcCCCCeEEEE-eCCCeEEEEEccCCeeeEEeccccccCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEee---
Q 010362 270 EFSRDSEMLASG-SQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFR--- 345 (512)
Q Consensus 270 ~~s~~~~~l~s~-~~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~--- 345 (512)
.|.++...|+-+ -..+.|.-|+..+++. ..+. ....+.++..-..+..|+++. ..+.+++.+++..+..+.
T Consensus 31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~~-~~~~--~p~~~~~~~~~d~~g~Lv~~~--~g~~~~~~~~~~~~t~~~~~~ 105 (307)
T COG3386 31 VWDPDRGALLWVDILGGRIHRLDPETGKK-RVFP--SPGGFSSGALIDAGGRLIACE--HGVRLLDPDTGGKITLLAEPE 105 (307)
T ss_pred cCcCCCCEEEEEeCCCCeEEEecCCcCce-EEEE--CCCCcccceeecCCCeEEEEc--cccEEEeccCCceeEEecccc
Confidence 466776644444 4567899999877753 2332 344455555554555555543 345677766665533322
Q ss_pred -C-CccceeEEEEcCCCCEEEEEeC-----------CCcEEEEeCCCCceeeecCCCCCCCCCCceeEEEEEcCCCCCeE
Q 010362 346 -G-HSSYVNDAIFTNDGSRVVTASS-----------DCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHI 412 (512)
Q Consensus 346 -~-~~~~v~~~~~~~~~~~l~~~~~-----------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l 412 (512)
+ .....+.....|+|.+.++... -|.++.+|. .+.....+. .+-...+.++|+|++..++
T Consensus 106 ~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~------~~~~~~NGla~SpDg~tly 178 (307)
T COG3386 106 DGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLD------DDLTIPNGLAFSPDGKTLY 178 (307)
T ss_pred CCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeec------CcEEecCceEECCCCCEEE
Confidence 1 1245678889999987665443 133444443 333333322 1234567899999997777
Q ss_pred EEEcCCCcEEEEecCC---eEE--EEeeCCcccCCcEEEEEECCCCCEEEEEeCCC-eEEEEEcCCCeeEEeccccCCCe
Q 010362 413 VVCNKTSSIYIMTLQG---QVV--KSFSSGKREGGDFVAACVSPKGEWIYCVGEDR-NLYCFSHQSGKLEHLMKVHEKDV 486 (512)
Q Consensus 413 ~~~~~~~~i~~~~~~~---~~~--~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~dg-~i~iwd~~~~~~~~~~~~h~~~v 486 (512)
++=+..+.|+-+++.. ..- ..+.......+..-.++...+|++.+++..+| .|.+|+.. |+++..+..+...+
T Consensus 179 ~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~ 257 (307)
T COG3386 179 VADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRP 257 (307)
T ss_pred EEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCCCCC
Confidence 7777778999988762 111 11111111334455788888999886555554 99999988 99999888777788
Q ss_pred EEEEEcC-CCC-eEEEEEC
Q 010362 487 IGVTHHP-HRN-LLATYGE 503 (512)
Q Consensus 487 ~~v~~~p-~~~-~l~s~~~ 503 (512)
++++|-- +.+ +++|+..
T Consensus 258 t~~~FgG~~~~~L~iTs~~ 276 (307)
T COG3386 258 TNPAFGGPDLNTLYITSAR 276 (307)
T ss_pred ccceEeCCCcCEEEEEecC
Confidence 8888864 444 4444443
No 366
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.94 E-value=0.028 Score=56.06 Aligned_cols=154 Identities=12% Similarity=0.100 Sum_probs=95.3
Q ss_pred CCEEEEEeCCCeEEEEEcCCCeeeccccccccceeeccCcceeEEEEcCCCCeEEEEe------CCCeEEEEEccCCeee
Q 010362 225 GQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGS------QDGKIKVWRIRSGQCL 298 (512)
Q Consensus 225 ~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~------~dg~i~vwd~~~~~~~ 298 (512)
+..++.++.|+.+.-.|..+|+........... ....+++--.--++ .++++. .+|.|..+|.++|+.+
T Consensus 120 ~~~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~~----~~~~~tssP~v~~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~l 194 (527)
T TIGR03075 120 DGKVFFGTLDARLVALDAKTGKVVWSKKNGDYK----AGYTITAAPLVVKG-KVITGISGGEFGVRGYVTAYDAKTGKLV 194 (527)
T ss_pred CCEEEEEcCCCEEEEEECCCCCEEeeccccccc----ccccccCCcEEECC-EEEEeecccccCCCcEEEEEECCCCcee
Confidence 346777888999999999999987654431100 00111110000134 444443 2689999999999988
Q ss_pred EEecccccc------------------------------Ce-EEEEEecCCCEEEEEeCC-----C-----------cEE
Q 010362 299 RRLERAHSE------------------------------GV-TSLVFSRDGSQILSTSFD-----S-----------TAR 331 (512)
Q Consensus 299 ~~~~~~~~~------------------------------~i-~~~~~~~~~~~l~~~~~d-----g-----------~v~ 331 (512)
.++...... .+ ..+++.|...+++.+..+ + .|.
T Consensus 195 W~~~~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~v 274 (527)
T TIGR03075 195 WRRYTVPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIV 274 (527)
T ss_pred EeccCcCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEE
Confidence 776532111 01 133556666666666522 2 677
Q ss_pred EEeCCCCceeEEeeCCcccee---------EEEEcCCCC---EEEEEeCCCcEEEEeCCCCcee
Q 010362 332 IHGLKSGKLLKEFRGHSSYVN---------DAIFTNDGS---RVVTASSDCTVKVWDLKSTDCL 383 (512)
Q Consensus 332 i~d~~~~~~~~~~~~~~~~v~---------~~~~~~~~~---~l~~~~~dg~i~iwd~~~~~~~ 383 (512)
-.|+++|+....++.....+. -+....+|+ .++.+..+|.+.+.|-++++.+
T Consensus 275 Ald~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i 338 (527)
T TIGR03075 275 ARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLL 338 (527)
T ss_pred EEccccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence 889999999888765222221 122224665 6788999999999999999875
No 367
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.94 E-value=0.0027 Score=60.21 Aligned_cols=237 Identities=11% Similarity=0.132 Sum_probs=119.6
Q ss_pred ceeEEEEcCCCCeEEEEeCCCeEEEEEccCCeeeEEeccccccCeEEEEEecCCCEEEEEeCCCcEEEEeCCC---C---
Q 010362 265 TVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKS---G--- 338 (512)
Q Consensus 265 ~v~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~i~d~~~---~--- 338 (512)
.|+.+.|+++..-|++|...|.|.||.....+.... ....+-....+.+- ...++.-.+-|+.. .
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~---~~~~~~~~~~~~~~------~~~~~~~~l~di~~r~~~~~~ 73 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGN---REQPPDLDYNFRRF------SLNNSPGKLTDISDRAPPSLK 73 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE---------------------S--------GGGSS-SEEE-GGG--TT-S
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCc---cCCCcccCcccccc------cccCCCcceEEehhhCCcccc
Confidence 588999999999999999999999998765443220 00111111111110 00111222333321 1
Q ss_pred ---ceeEEeeCCccceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeecCCCC--CCCCCCceeEEEEEcC---CC--
Q 010362 339 ---KLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPP--PLRGGDASVNSVHLFP---KN-- 408 (512)
Q Consensus 339 ---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~--~~~~~~~~i~~~~~~~---~~-- 408 (512)
.+..-+....++|++++.+.- .+++.|..+|.+.|.|+|....+..-.... ........++++.|.. .+
T Consensus 74 ~gf~P~~l~~~~~g~vtal~~S~i-GFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ 152 (395)
T PF08596_consen 74 EGFLPLTLLDAKQGPVTALKNSDI-GFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDG 152 (395)
T ss_dssp EEEEEEEEE---S-SEEEEEE-BT-SEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSS
T ss_pred cccCchhheeccCCcEeEEecCCC-cEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCc
Confidence 223334456789999999755 489999999999999999887766532221 1223344566776652 12
Q ss_pred --CCeEEEEcCCCcEEEEecC----CeEEEEeeCC-cccCCcEEEEE-ECCC-C-------------------CEEEEEe
Q 010362 409 --PDHIVVCNKTSSIYIMTLQ----GQVVKSFSSG-KREGGDFVAAC-VSPK-G-------------------EWIYCVG 460 (512)
Q Consensus 409 --~~~l~~~~~~~~i~~~~~~----~~~~~~~~~~-~~~~~~~~~~~-~s~~-g-------------------~~l~~g~ 460 (512)
.-.+++|+..|.+.+|.+. +.-...+... ..+...+..++ ++.+ | +-++...
T Consensus 153 ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvv 232 (395)
T PF08596_consen 153 YSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVV 232 (395)
T ss_dssp SEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE
T ss_pred ccceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEE
Confidence 1368888999999999774 2211111111 12233444333 3221 1 1234445
Q ss_pred CCCeEEEEEcCCCeeEEeccccCCCeEEEEEc-----CCCCeEEEEECCCeEEEec
Q 010362 461 EDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHH-----PHRNLLATYGEDCTMKLWK 511 (512)
Q Consensus 461 ~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~-----p~~~~l~s~~~dg~i~iW~ 511 (512)
.+..++++...+.+..+......-....+.+- ..+..|++-..||.|+++-
T Consensus 233 Se~~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~S 288 (395)
T PF08596_consen 233 SESDIRVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYS 288 (395)
T ss_dssp -SSEEEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEE
T ss_pred cccceEEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEE
Confidence 57789999988877665544222233344442 3566888889999999873
No 368
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=97.92 E-value=0.018 Score=53.29 Aligned_cols=273 Identities=13% Similarity=0.147 Sum_probs=134.9
Q ss_pred EECCCCCEEEEEe-CCC--eEEEEEcCCCeeeccccccccceeeccCcceeEEEEcCCCCeEEEEeCCCeEEEEEccCCe
Q 010362 220 RFSPDGQFLVSCS-FDG--FIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQ 296 (512)
Q Consensus 220 ~~s~~~~~l~sg~-~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~ 296 (512)
+|.+||+.|+.++ .|| .+.+.|+.+++..+--.. .........++|+++.++-...+..++-.|+.+.+
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg--------~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e 113 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDG--------PGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLE 113 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---S--------S-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--
T ss_pred CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccC--------CCCCccceEEecCCCeEEEEECCCeEEEEECCcCc
Confidence 5788997766655 344 677778888876543221 11223346677888888766666789999999987
Q ss_pred eeEEeccccccCeEEEEEe--cCCCEEEEEe----------------------CCCcEEEEeCCCCceeEEeeCCcccee
Q 010362 297 CLRRLERAHSEGVTSLVFS--RDGSQILSTS----------------------FDSTARIHGLKSGKLLKEFRGHSSYVN 352 (512)
Q Consensus 297 ~~~~~~~~~~~~i~~~~~~--~~~~~l~~~~----------------------~dg~v~i~d~~~~~~~~~~~~~~~~v~ 352 (512)
....+. .....+-...|. .|+..++-.- ....|...|+.+|+....+. ....+.
T Consensus 114 ~~~vy~-~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~-~~~wlg 191 (386)
T PF14583_consen 114 ERVVYE-VPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFE-DTDWLG 191 (386)
T ss_dssp EEEEEE---TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEE-ESS-EE
T ss_pred EEEEEE-CCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEe-cCcccc
Confidence 654443 334444445554 3555543221 11345666888777655444 445678
Q ss_pred EEEEcCCCCEEEEEeCCC-----cEEEEeCCC-CceeeecCCCCCCCCCCceeEEEEEcCCCCCeEEEEcCCC----cEE
Q 010362 353 DAIFTNDGSRVVTASSDC-----TVKVWDLKS-TDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTS----SIY 422 (512)
Q Consensus 353 ~~~~~~~~~~l~~~~~dg-----~i~iwd~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~----~i~ 422 (512)
.+.|+|....+++=+..| .-+||-+++ +.....+.... ....+..=-|.|++..+...+...+ .|.
T Consensus 192 H~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~----~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~ 267 (386)
T PF14583_consen 192 HVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRM----EGESVGHEFWVPDGSTIWYDSYTPGGQDFWIA 267 (386)
T ss_dssp EEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS-------TTEEEEEEEE-TTSS-EEEEEEETTT--EEEE
T ss_pred CcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCC----CCcccccccccCCCCEEEEEeecCCCCceEEE
Confidence 899999666665544332 136675543 23333332221 2345555678888877666544222 344
Q ss_pred EEecCCeEEEEeeCCcccCCcEEEEEECCCCCEEEEEeCCC----------------eEEEEEcCCCeeEEe--------
Q 010362 423 IMTLQGQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDR----------------NLYCFSHQSGKLEHL-------- 478 (512)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~dg----------------~i~iwd~~~~~~~~~-------- 478 (512)
-++........+... ......-.++||++++.=+.|. -|++++...+.....
T Consensus 268 ~~d~~t~~~~~~~~~----p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~l~~h~~sw~ 343 (386)
T PF14583_consen 268 GYDPDTGERRRLMEM----PWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFRKLARHDTSWK 343 (386)
T ss_dssp EE-TTT--EEEEEEE-----SEEEEEE-TTSSEEEEEE-------------------EEEEEETTTTEEEEEEE------
T ss_pred eeCCCCCCceEEEeC----CceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCceeeeeeccCcce
Confidence 455553322222221 1244566689999887555432 567788877664321
Q ss_pred -ccccCC-CeEEEEEcCCCCeEE-EEECCCeEEEe
Q 010362 479 -MKVHEK-DVIGVTHHPHRNLLA-TYGEDCTMKLW 510 (512)
Q Consensus 479 -~~~h~~-~v~~v~~~p~~~~l~-s~~~dg~i~iW 510 (512)
+.++.. .=-...|+||+++++ ++...|...||
T Consensus 344 v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY 378 (386)
T PF14583_consen 344 VLDGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVY 378 (386)
T ss_dssp -BTTBSSTT----EE-TTSSEEEEEE-TTSS-EEE
T ss_pred eecCCCccCCCCCccCCCCCEEEEECCCCCCccEE
Confidence 111111 113679999998655 66677776665
No 369
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.89 E-value=4.3e-05 Score=45.29 Aligned_cols=39 Identities=36% Similarity=0.584 Sum_probs=34.4
Q ss_pred CeeEEeccccCCCeEEEEEcCCCCeEEEEECCCeEEEec
Q 010362 473 GKLEHLMKVHEKDVIGVTHHPHRNLLATYGEDCTMKLWK 511 (512)
Q Consensus 473 ~~~~~~~~~h~~~v~~v~~~p~~~~l~s~~~dg~i~iW~ 511 (512)
+++...+..|...|.++.|+|++.++++++.||.+++|+
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 345666778889999999999999999999999999997
No 370
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.88 E-value=0.0022 Score=47.56 Aligned_cols=100 Identities=19% Similarity=0.280 Sum_probs=71.0
Q ss_pred eeEEEEcC---CC-CeEEEEeCCCeEEEEEccCCeeeEEeccccccCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCcee
Q 010362 266 VLCIEFSR---DS-EMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLL 341 (512)
Q Consensus 266 v~~l~~s~---~~-~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~ 341 (512)
|++|++.. || +.|++||.|..|++|+ ..+.+..+. ....|.+++-... ..|+.+..+|+|-+|+- ...+
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~--~~e~~~Ei~--e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~--~~Rl 74 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFK--GDEIVAEIT--ETDKVTSLCSLGG-GRFAYALANGTVGVYDR--SQRL 74 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEe--CCcEEEEEe--cccceEEEEEcCC-CEEEEEecCCEEEEEeC--ccee
Confidence 56666655 32 5799999999999997 345666664 5677888887765 67999999999999974 4445
Q ss_pred EEeeCCccceeEEEEcC-CC---CEEEEEeCCCcEE
Q 010362 342 KEFRGHSSYVNDAIFTN-DG---SRVVTASSDCTVK 373 (512)
Q Consensus 342 ~~~~~~~~~v~~~~~~~-~~---~~l~~~~~dg~i~ 373 (512)
...+.... ++++.+.. ++ ..|++|-.+|.|-
T Consensus 75 WRiKSK~~-~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 75 WRIKSKNQ-VTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred eeeccCCC-eEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 55554333 66666543 32 3688898888774
No 371
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=97.86 E-value=0.016 Score=50.72 Aligned_cols=205 Identities=13% Similarity=0.124 Sum_probs=124.2
Q ss_pred ceEEEecCcCceEEEEECCCCCEEEEEeCCC--eEEEEEcCCCeeeccccccccceeeccCcceeEEEEcCCCCeEEEEe
Q 010362 205 SHTIKFGTKSHAECARFSPDGQFLVSCSFDG--FIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGS 282 (512)
Q Consensus 205 ~~~~~~~h~~~v~~~~~s~~~~~l~sg~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~ 282 (512)
..+.......-...+.|..+|.++-+.+.-| .|+.+|+.+++........... ... .++.. +++.....-
T Consensus 36 v~~ypHd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~----FgE---Git~~-~d~l~qLTW 107 (264)
T PF05096_consen 36 VETYPHDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRY----FGE---GITIL-GDKLYQLTW 107 (264)
T ss_dssp EEEEE--TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT------EE---EEEEE-TTEEEEEES
T ss_pred EEECCCCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccc----cce---eEEEE-CCEEEEEEe
Confidence 3344333344455688888888888877666 7999999999876654433211 111 22222 233334445
Q ss_pred CCCeEEEEEccCCeeeEEeccccccCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeeCC--cc---ceeEEEEc
Q 010362 283 QDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRGH--SS---YVNDAIFT 357 (512)
Q Consensus 283 ~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~--~~---~v~~~~~~ 357 (512)
.++...+||..+-+.+.++.. .+.=..++ .|++.|+.+.....++++|..+.+...++... .. .++-+.|-
T Consensus 108 k~~~~f~yd~~tl~~~~~~~y--~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i 183 (264)
T PF05096_consen 108 KEGTGFVYDPNTLKKIGTFPY--PGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI 183 (264)
T ss_dssp SSSEEEEEETTTTEEEEEEE---SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE
T ss_pred cCCeEEEEccccceEEEEEec--CCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE
Confidence 688999999999998888863 34455666 46777887777889999999888877766542 12 35556665
Q ss_pred CCCCEEEEEeCCCcEEEEeCCCCceeeecCCCC---------CCCCCCceeEEEEEcCCCCCeEEEEcCCCcEE
Q 010362 358 NDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPP---------PLRGGDASVNSVHLFPKNPDHIVVCNKTSSIY 422 (512)
Q Consensus 358 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~---------~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~ 422 (512)
+|...+-.-....|...|..+|+....+.... .......-.+.+++.|....++++|-.=..++
T Consensus 184 -~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK~Wp~ly 256 (264)
T PF05096_consen 184 -NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGKLWPKLY 256 (264)
T ss_dssp -TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEETT-SEEE
T ss_pred -cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeCCCCceE
Confidence 56555555556678888999888776543211 11112456899999999878888876544443
No 372
>smart00668 CTLH C-terminal to LisH motif. Alpha-helical motif of unknown function.
Probab=97.84 E-value=1.3e-05 Score=53.08 Aligned_cols=48 Identities=25% Similarity=0.295 Sum_probs=40.4
Q ss_pred cHHHHHhhhccCCchhhhhhhccccC-----ChhHHHHHHHHHHHHHHHcCCh
Q 010362 43 SIETFVADINSGRWDAILPQVAQLKL-----PRNKLEDLYEQIVLEMIELREL 90 (512)
Q Consensus 43 ~~~~~~~~i~~g~w~~~~~~l~~~~~-----~~~~~~~l~~~~~~e~l~~~~~ 90 (512)
....++++|++|+|+.|++.+..... ...+.|.|++|+|+|+++.++.
T Consensus 4 ~~~~i~~~i~~g~~~~a~~~~~~~~~~l~~~~~~l~f~L~~q~~lell~~~~~ 56 (58)
T smart00668 4 ERKRIRELILKGDWDEALEWLSSLKPPLLERNSKLEFELRKQKFLELVRQGKL 56 (58)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHcCHHHhccCCCchhHHHHHHHHHHHHcCCc
Confidence 46689999999999999998877643 2367899999999999998754
No 373
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.83 E-value=0.0056 Score=53.11 Aligned_cols=239 Identities=16% Similarity=0.152 Sum_probs=140.4
Q ss_pred EEEECCCC-CEEEEEeCCCe-EEEEEcCCCeeeccccccccceeeccCcceeEEEEcCCCCeEEEEeCC-----CeEEEE
Q 010362 218 CARFSPDG-QFLVSCSFDGF-IEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQD-----GKIKVW 290 (512)
Q Consensus 218 ~~~~s~~~-~~l~sg~~dg~-i~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d-----g~i~vw 290 (512)
.++|+|.- .-++.+-.-|+ ..++|.++......+.....+.|.+|. .|||||.+|...-.| |.|-||
T Consensus 72 gi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHG------vfs~dG~~LYATEndfd~~rGViGvY 145 (366)
T COG3490 72 GIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHG------VFSPDGRLLYATENDFDPNRGVIGVY 145 (366)
T ss_pred CeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeeccc------ccCCCCcEEEeecCCCCCCCceEEEE
Confidence 46777743 44555555554 568898888877777777778888887 499999999876544 789999
Q ss_pred EccCC-eeeEEeccccccCeEEEEEecCCCEEEEEeC------------------CCcEEEEeCCCCceeEEe--e--CC
Q 010362 291 RIRSG-QCLRRLERAHSEGVTSLVFSRDGSQILSTSF------------------DSTARIHGLKSGKLLKEF--R--GH 347 (512)
Q Consensus 291 d~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~------------------dg~v~i~d~~~~~~~~~~--~--~~ 347 (512)
|.+.+ +.+..+. .|.-....+.|.+||..++.+.. .-.+.+.|..+|+.+.+. . .+
T Consensus 146 d~r~~fqrvgE~~-t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~ 224 (366)
T COG3490 146 DAREGFQRVGEFS-THGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLR 224 (366)
T ss_pred ecccccceecccc-cCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhh
Confidence 98754 3344554 67777788999999999887642 112334454455554332 2 23
Q ss_pred ccceeEEEEcCCCCEEEEEeCCCc-----EEEEeCCCCceeeecCCCCC-CCCCCceeEEEEEcCCCCCeEEEEcCCCcE
Q 010362 348 SSYVNDAIFTNDGSRVVTASSDCT-----VKVWDLKSTDCLQTFKPPPP-LRGGDASVNSVHLFPKNPDHIVVCNKTSSI 421 (512)
Q Consensus 348 ~~~v~~~~~~~~~~~l~~~~~dg~-----i~iwd~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i 421 (512)
.-.|..++..+||...+.+-..|. -.+=-.+.++...-+..+.. .......|-+++.+....-..+++-..+..
T Consensus 225 ~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~ 304 (366)
T COG3490 225 QLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRA 304 (366)
T ss_pred hcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeE
Confidence 445788888888765554332221 11111122232222222110 011224566777776664555555566778
Q ss_pred EEEecCCeEEEEeeCCcccCCcEEEEEECCCCCEEEEEeCCCeEEEEE
Q 010362 422 YIMTLQGQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFS 469 (512)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~dg~i~iwd 469 (512)
.+||.....+....... -+.-+.+...-+++.+.+|.+.++.
T Consensus 305 vi~da~tG~vv~~a~l~------daaGva~~~~gf~vssg~G~~~~~s 346 (366)
T COG3490 305 VIWDAATGAVVSEAALP------DAAGVAAAKGGFAVSSGQGRIIFYS 346 (366)
T ss_pred EEEEcCCCcEEeccccc------ccccceeccCceEEecCCceEEecc
Confidence 89999854443322211 1122233344455666678887774
No 374
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=97.80 E-value=0.0041 Score=58.83 Aligned_cols=97 Identities=20% Similarity=0.280 Sum_probs=61.5
Q ss_pred EEEECCCCCEEEEEeCCCeEEE---EEcCC-CeeeccccccccceeeccC-cceeEEEEcC-----------CCCeEEEE
Q 010362 218 CARFSPDGQFLVSCSFDGFIEV---WDYLS-GKLKKDLQYQADETFMMHD-ETVLCIEFSR-----------DSEMLASG 281 (512)
Q Consensus 218 ~~~~s~~~~~l~sg~~dg~i~i---wd~~~-~~~~~~~~~~~~~~~~~h~-~~v~~l~~s~-----------~~~~l~s~ 281 (512)
+++.+|+++.||.|..+..+.+ |+... +.....+.......+.... ..|+++.|-| |...++.|
T Consensus 6 ~isls~~~d~laiA~~~r~vil~~~w~~~~~~~~~~~~~~~~~g~l~~~~~e~ITsi~clpl~s~~~s~~~~dw~~I~VG 85 (415)
T PF14655_consen 6 SISLSPDGDLLAIARGQRLVILTSKWDSSRKGENENTYSISWSGPLDDEPGECITSILCLPLSSQKRSTGGPDWTCIAVG 85 (415)
T ss_pred eEEecCCCCEEEEEcCCEEEEEEeeccccccCCCCCeEEEEeeeeccCCCCCEEEEEEEEEeecccccCCCCCcEEEEEE
Confidence 4688999999999987776666 54321 1111111111111111111 4677666644 46789999
Q ss_pred eCCCeEEEEEccCCeeeEEeccccccCeEEEEEec
Q 010362 282 SQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSR 316 (512)
Q Consensus 282 ~~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~ 316 (512)
..+|.|++|. ++|..+..-. -|..+|..+.+..
T Consensus 86 ~ssG~vrfyt-e~G~LL~~Q~-~h~~pV~~ik~~~ 118 (415)
T PF14655_consen 86 TSSGYVRFYT-ENGVLLLSQL-LHEEPVLKIKCRS 118 (415)
T ss_pred ecccEEEEEe-ccchHHHHHh-cCccceEEEEecc
Confidence 9999999998 4677665544 6888999888754
No 375
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.79 E-value=0.00015 Score=69.12 Aligned_cols=95 Identities=14% Similarity=0.116 Sum_probs=79.8
Q ss_pred ccCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeeCCcccee-EEEEcCCCCEEEEEeCCCcEEEEeCCCCceee
Q 010362 306 SEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVN-DAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQ 384 (512)
Q Consensus 306 ~~~i~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 384 (512)
...+..+.|+|.-..+|.+..+|.|.++.+. .+.+.++.-|+..++ +++|.|||+.++.|-.||+|++.|..++..+.
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~ 98 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLV 98 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCcee
Confidence 4568889999999999999999999999986 888888887777777 99999999999999999999999999988777
Q ss_pred ecCCCCCCCCCCceeEEEEEcC
Q 010362 385 TFKPPPPLRGGDASVNSVHLFP 406 (512)
Q Consensus 385 ~~~~~~~~~~~~~~i~~~~~~~ 406 (512)
.... .....|.++.|.+
T Consensus 99 ~~~~-----s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 99 SFLF-----SVETDISKGIWDR 115 (665)
T ss_pred cccc-----ccccchheeeccc
Confidence 6422 2345677777753
No 376
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.79 E-value=0.01 Score=51.58 Aligned_cols=237 Identities=13% Similarity=0.150 Sum_probs=130.5
Q ss_pred eEEEEcCCC-CeEEEEeCCCe-EEEEEccCCeeeEEeccccc-cCeEEEEEecCCCEEEEEeCC-----CcEEEEeCCCC
Q 010362 267 LCIEFSRDS-EMLASGSQDGK-IKVWRIRSGQCLRRLERAHS-EGVTSLVFSRDGSQILSTSFD-----STARIHGLKSG 338 (512)
Q Consensus 267 ~~l~~s~~~-~~l~s~~~dg~-i~vwd~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~d-----g~v~i~d~~~~ 338 (512)
..|+++|.. .-++.+-.-|+ ..++|..+.+....+..... .-.-.=.|||||.+|+..-.| |.|-+||.+.+
T Consensus 71 Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~ 150 (366)
T COG3490 71 HGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREG 150 (366)
T ss_pred CCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEecccc
Confidence 356777743 34555555554 56788887766555532111 112234699999998876443 78999999754
Q ss_pred -ceeEEeeCCccceeEEEEcCCCCEEEEEeCC------------------CcEEEEeCCCCceeeecCCCCCCCCCCcee
Q 010362 339 -KLLKEFRGHSSYVNDAIFTNDGSRVVTASSD------------------CTVKVWDLKSTDCLQTFKPPPPLRGGDASV 399 (512)
Q Consensus 339 -~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------------------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~i 399 (512)
+.+.++..|.-....+.|.+||+.++.+... -.+.+.|..++..+.+...+.. -+..++
T Consensus 151 fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~--l~~lSi 228 (366)
T COG3490 151 FQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPAS--LRQLSI 228 (366)
T ss_pred cceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchh--hhhcce
Confidence 4566788888888899999999998876421 1233444445544444333321 233456
Q ss_pred EEEEEcCCCCCeEEEEcCCCc------EEEEecCCeEEEEeeCCcc----cCCcEEEEEECCCCCEEEEEe-CCCeEEEE
Q 010362 400 NSVHLFPKNPDHIVVCNKTSS------IYIMTLQGQVVKSFSSGKR----EGGDFVAACVSPKGEWIYCVG-EDRNLYCF 468 (512)
Q Consensus 400 ~~~~~~~~~~~~l~~~~~~~~------i~~~~~~~~~~~~~~~~~~----~~~~~~~~~~s~~g~~l~~g~-~dg~i~iw 468 (512)
..+...+++ ..++.|...|. +.-.-..++.+..+..... ....+-+++...+..+++..+ ..+...+|
T Consensus 229 RHld~g~dg-tvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~ 307 (366)
T COG3490 229 RHLDIGRDG-TVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIW 307 (366)
T ss_pred eeeeeCCCC-cEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEE
Confidence 666666554 33333322211 0000011222222221111 123455677776666666666 45567899
Q ss_pred EcCCCeeEEeccccCCCeEEEEEcCCCCeEEEEECCCeEEEe
Q 010362 469 SHQSGKLEHLMKVHEKDVIGVTHHPHRNLLATYGEDCTMKLW 510 (512)
Q Consensus 469 d~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~~~dg~i~iW 510 (512)
|..+|..+..-.... ...|+- ...=++..+.+|.+.++
T Consensus 308 da~tG~vv~~a~l~d--aaGva~--~~~gf~vssg~G~~~~~ 345 (366)
T COG3490 308 DAATGAVVSEAALPD--AAGVAA--AKGGFAVSSGQGRIIFY 345 (366)
T ss_pred EcCCCcEEecccccc--ccccee--ccCceEEecCCceEEec
Confidence 999998875543221 223332 23334555567777643
No 377
>PF10607 CLTH: CTLH/CRA C-terminal to LisH motif domain; InterPro: IPR019589 This entry represents the CRA (or CT11-RanBPM) domain, which is a protein-protein interaction domain present in crown eukaryotes (plants, animals, fungi) and which is found in Ran-binding proteins such as Ran-binding protein 9 (RanBP9 or RanBPM) and RanBP10. RanBPM is a scaffolding protein important in regulating cellular function in both the immune system and the nervous system, and may act as an adapter protein to couple membrane receptors to intracellular signaling pathways. This domain is at the C terminus of the proteins and is the binding domain for the CRA motif, which is comprised of approximately 100 amino acids at the C-terminal of RanBPM. It was found to be important for the interaction of RanBPM with fragile X mental retardation protein (FMRP), but its functional significance has yet to be determined [].
Probab=97.79 E-value=0.00012 Score=59.26 Aligned_cols=122 Identities=16% Similarity=0.153 Sum_probs=83.0
Q ss_pred HHHHHhhhccCCchhhhhhhcccc-----CChhHHHHHHHHHHHHHHHcCChHHHHHHHHhcchhhhcccCChHHHHHHH
Q 010362 44 IETFVADINSGRWDAILPQVAQLK-----LPRNKLEDLYEQIVLEMIELRELDTARAILRQTQAMGVMKQEQPERYLRLE 118 (512)
Q Consensus 44 ~~~~~~~i~~g~w~~~~~~l~~~~-----~~~~~~~~l~~~~~~e~l~~~~~~~a~~~lr~~~~~~~~~~~~~~~~~~l~ 118 (512)
...++++|++|+++.|+..+.... ....+.|.++.|+|+|++..++..+|+...|+.+.+. .....+.+.++.
T Consensus 5 r~~I~~~I~~g~i~~Ai~w~~~~~~~l~~~~~~L~f~L~~q~fiell~~~~~~~Ai~y~r~~l~~~--~~~~~~~l~~~~ 82 (145)
T PF10607_consen 5 RKKIRQAILNGDIDPAIEWLNENFPELLKRNSSLEFELRCQQFIELLREGDIMEAIEYARKHLSPF--NDEFLEELKKLM 82 (145)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHcCHHHHhcCCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhh--HHHHHHHHHHHH
Confidence 557889999999999999877652 3356789999999999999999999999999976432 223455666677
Q ss_pred HHhcccCCCc--cccccCChhhHHHHHHHHHHhccc---cccC-chHHHHHHHHH
Q 010362 119 HLLVRTYFDA--HEAYQDSTKERRRAQIAQAIAAEV---SVVP-PSRLMALIGQA 167 (512)
Q Consensus 119 ~ll~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~---~~~p-~~rl~~l~~~~ 167 (512)
.++....... ...+.......+|.+++..+...+ ...| .+.|..++.+.
T Consensus 83 ~lL~~~~~~~~~~s~~~~l~~~~~~~~la~~~~~~~l~~~~~~~~s~L~~~~~~g 137 (145)
T PF10607_consen 83 SLLAYPDPEEPLPSPYKELLSPERREELAEEFNSAILKSYGLPKESPLEVILKAG 137 (145)
T ss_pred HHHHcCCcccccchHHHHHhChHHHHHHHHHHHHHHHHHhCcCCCCHHHHHHHHH
Confidence 7776554433 223333333366777777666544 2333 35566665544
No 378
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.76 E-value=0.0037 Score=63.66 Aligned_cols=145 Identities=16% Similarity=0.195 Sum_probs=96.1
Q ss_pred CCEEEEE-eCCCcEEEEeCCCCceeEEeeCCccc-eeEEEEcC-----CCCEEEEEeCCCcEEEEeCCCCc--eeeecCC
Q 010362 318 GSQILST-SFDSTARIHGLKSGKLLKEFRGHSSY-VNDAIFTN-----DGSRVVTASSDCTVKVWDLKSTD--CLQTFKP 388 (512)
Q Consensus 318 ~~~l~~~-~~dg~v~i~d~~~~~~~~~~~~~~~~-v~~~~~~~-----~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~ 388 (512)
.++|+.. .....|+-.|++.|+.+..++.|... |.+++-.. .....+.|-.+..+..||.|-.. .+.. ..
T Consensus 493 ~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~-~~ 571 (794)
T PF08553_consen 493 RNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDS-QS 571 (794)
T ss_pred cceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeec-cc
Confidence 3444443 34578999999999999999987653 55544321 13345677778889999998643 1211 11
Q ss_pred CCCCCCCCceeEEEEEcCCCCCeEEEEcCCCcEEEEecCCeEEEEeeCCcccCCcEEEEEECCCCCEEEEEeCCCeEEEE
Q 010362 389 PPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCF 468 (512)
Q Consensus 389 ~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~dg~i~iw 468 (512)
..........|++-.. ...+++|+.+|.|++||--|...++... .-+.+|..++++.||++|++.+. ..+.++
T Consensus 572 --k~Y~~~~~Fs~~aTt~--~G~iavgs~~G~IRLyd~~g~~AKT~lp--~lG~pI~~iDvt~DGkwilaTc~-tyLlLi 644 (794)
T PF08553_consen 572 --KQYSSKNNFSCFATTE--DGYIAVGSNKGDIRLYDRLGKRAKTALP--GLGDPIIGIDVTADGKWILATCK-TYLLLI 644 (794)
T ss_pred --cccccCCCceEEEecC--CceEEEEeCCCcEEeecccchhhhhcCC--CCCCCeeEEEecCCCcEEEEeec-ceEEEE
Confidence 0112233455555544 4699999999999999966644333333 33678999999999999988775 455566
Q ss_pred Ec
Q 010362 469 SH 470 (512)
Q Consensus 469 d~ 470 (512)
+.
T Consensus 645 ~t 646 (794)
T PF08553_consen 645 DT 646 (794)
T ss_pred EE
Confidence 54
No 379
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.75 E-value=0.0038 Score=62.56 Aligned_cols=149 Identities=16% Similarity=0.211 Sum_probs=87.7
Q ss_pred CceEEEEECCCCCEEEEEe------CCCeEEEEEcCCCeeeccccccccceeeccCcceeEEEEcCCCCeEEEEeCC---
Q 010362 214 SHAECARFSPDGQFLVSCS------FDGFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQD--- 284 (512)
Q Consensus 214 ~~v~~~~~s~~~~~l~sg~------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d--- 284 (512)
..+...++||+|+.+|... .|+.-.||=...+.....+ . .....+.-.|+|||+.+++.+..
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~l-------t--~g~~~t~PsWspDG~~lw~v~dg~~~ 420 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQV-------L--EGHSLTRPSWSLDADAVWVVVDGNTV 420 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcceee-------e--cCCCCCCceECCCCCceEEEecCcce
Confidence 4678899999999887665 2443344432222211211 1 12247888999999888877532
Q ss_pred ---------CeEEEEEccCCeeeEEeccccccCeEEEEEecCCCEEEEEeCCCcEEE---EeCCCCce-e---EEee-CC
Q 010362 285 ---------GKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARI---HGLKSGKL-L---KEFR-GH 347 (512)
Q Consensus 285 ---------g~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~i---~d~~~~~~-~---~~~~-~~ 347 (512)
+.+.+.+++.+.... .....|..+.|+|||..++... +|.|++ -....|.. + ..+. .-
T Consensus 421 ~~v~~~~~~gql~~~~vd~ge~~~----~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l 495 (591)
T PRK13616 421 VRVIRDPATGQLARTPVDASAVAS----RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGL 495 (591)
T ss_pred EEEeccCCCceEEEEeccCchhhh----ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeeccc
Confidence 233333443333222 2346799999999999998776 577777 44344431 1 1122 22
Q ss_pred ccceeEEEEcCCCCEEEEEeCCCcEEEEeC
Q 010362 348 SSYVNDAIFTNDGSRVVTASSDCTVKVWDL 377 (512)
Q Consensus 348 ~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~ 377 (512)
...+.++.|.+++.++ ++..++.-.+|.+
T Consensus 496 ~~~~~~l~W~~~~~L~-V~~~~~~~~v~~v 524 (591)
T PRK13616 496 GDTAVSLDWRTGDSLV-VGRSDPEHPVWYV 524 (591)
T ss_pred CCccccceEecCCEEE-EEecCCCCceEEE
Confidence 3346889999998854 5555554445543
No 380
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.71 E-value=0.0052 Score=61.62 Aligned_cols=191 Identities=14% Similarity=0.175 Sum_probs=106.1
Q ss_pred cceeEEEEcCCCCeEEEEe------CCCeEEEEEccCCeeeEEeccccccCeEEEEEecCCCEEEEEeCC----------
Q 010362 264 ETVLCIEFSRDSEMLASGS------QDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFD---------- 327 (512)
Q Consensus 264 ~~v~~l~~s~~~~~l~s~~------~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---------- 327 (512)
..+...+.+|+|+.++... .|+.-.+|-...+.....+..+ ...+.-.|+|||..+++....
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~lt~g--~~~t~PsWspDG~~lw~v~dg~~~~~v~~~~ 427 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQVLEG--HSLTRPSWSLDADAVWVVVDGNTVVRVIRDP 427 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcceeeecC--CCCCCceECCCCCceEEEecCcceEEEeccC
Confidence 4678999999999887765 2443344433223222333312 248888999998877776532
Q ss_pred --CcEEEEeCCCCceeEEeeCCccceeEEEEcCCCCEEEEEeCCCcEEE---EeCCCCceeeecCCCCCCC-CCCceeEE
Q 010362 328 --STARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKV---WDLKSTDCLQTFKPPPPLR-GGDASVNS 401 (512)
Q Consensus 328 --g~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i---wd~~~~~~~~~~~~~~~~~-~~~~~i~~ 401 (512)
+.+.+.+++.+.... .....|..+.|+|||..++... +|.|.+ -....+. ..+..+..+. .....+.+
T Consensus 428 ~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~--~~l~~~~~l~~~l~~~~~~ 501 (591)
T PRK13616 428 ATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQ--YALTNPREVGPGLGDTAVS 501 (591)
T ss_pred CCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCc--eeecccEEeecccCCcccc
Confidence 233333443333322 2345799999999999988766 477776 4433443 2222221111 22334578
Q ss_pred EEEcCCCCCeEEEEcCCCc--EEEEecCCeEEEEeeCCcccCCcEEEEEECCCCCEEEEEeCCCeEEE
Q 010362 402 VHLFPKNPDHIVVCNKTSS--IYIMTLQGQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYC 467 (512)
Q Consensus 402 ~~~~~~~~~~l~~~~~~~~--i~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~dg~i~i 467 (512)
+.|.+++. ++ ++..++. ++..+++|.....+.. ......+..++-+++ -++....+|.+.+
T Consensus 502 l~W~~~~~-L~-V~~~~~~~~v~~v~vDG~~~~~~~~-~n~~~~v~~vaa~~~--~iyv~~~~g~~~l 564 (591)
T PRK13616 502 LDWRTGDS-LV-VGRSDPEHPVWYVNLDGSNSDALPS-RNLSAPVVAVAASPS--TVYVTDARAVLQL 564 (591)
T ss_pred ceEecCCE-EE-EEecCCCCceEEEecCCccccccCC-CCccCceEEEecCCc--eEEEEcCCceEEe
Confidence 88998874 43 4444443 4444555554333222 112344666666653 4666666664443
No 381
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.71 E-value=0.0043 Score=46.07 Aligned_cols=100 Identities=19% Similarity=0.213 Sum_probs=68.2
Q ss_pred eEEEEECC---CC-CEEEEEeCCCeEEEEEcCCCeeeccccccccceeeccCcceeEEEEcCCCCeEEEEeCCCeEEEEE
Q 010362 216 AECARFSP---DG-QFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWR 291 (512)
Q Consensus 216 v~~~~~s~---~~-~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~vwd 291 (512)
|+++++.. +| +.|++||.|..|++|+-+ +....+. -...|++++-... ..++.+..+|+|-+|+
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~---------e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~ 69 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEIT---------ETDKVTSLCSLGG-GRFAYALANGTVGVYD 69 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEe---------cccceEEEEEcCC-CEEEEEecCCEEEEEe
Confidence 56666554 33 579999999999999743 4444333 4567888887766 5699999999999997
Q ss_pred ccCCeeeEEeccccccCeEEEEEec-CC---CEEEEEeCCCcEE
Q 010362 292 IRSGQCLRRLERAHSEGVTSLVFSR-DG---SQILSTSFDSTAR 331 (512)
Q Consensus 292 ~~~~~~~~~~~~~~~~~i~~~~~~~-~~---~~l~~~~~dg~v~ 331 (512)
- ...+.+.+ .+..+.++.+.. ++ ..|++|-.+|.|-
T Consensus 70 ~--~~RlWRiK--SK~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 70 R--SQRLWRIK--SKNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred C--cceeeeec--cCCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 4 34445554 334466666654 22 3688888888764
No 382
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=97.70 E-value=0.05 Score=51.79 Aligned_cols=269 Identities=13% Similarity=0.174 Sum_probs=142.0
Q ss_pred CCCEEEEEeCCCeEEEEEcCCCeeecc-ccccccceeeccCcceeEEEEcC-----CCCeEEEEeCCCeEEEEEccC--C
Q 010362 224 DGQFLVSCSFDGFIEVWDYLSGKLKKD-LQYQADETFMMHDETVLCIEFSR-----DSEMLASGSQDGKIKVWRIRS--G 295 (512)
Q Consensus 224 ~~~~l~sg~~dg~i~iwd~~~~~~~~~-~~~~~~~~~~~h~~~v~~l~~s~-----~~~~l~s~~~dg~i~vwd~~~--~ 295 (512)
+.+.|++||..|.++||+...+..... +-. -..-..+|..++.-+ +...||+ -.-..+.||.+.. |
T Consensus 36 ~~d~IivGS~~G~LrIy~P~~~~~~~~~lll-----E~~l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g 109 (418)
T PF14727_consen 36 GSDKIIVGSYSGILRIYDPSGNEFQPEDLLL-----ETQLKDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDG 109 (418)
T ss_pred CccEEEEeccccEEEEEccCCCCCCCccEEE-----EEecCCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecCC
Confidence 456899999999999999754432211 100 011456788777643 2334554 3456788888732 1
Q ss_pred e-------eeE-EeccccccCeEEEEEec----C-CCEEEEEeCCCcEEEEeCCCCceeEEeeCCccceeEEEEcCCCCE
Q 010362 296 Q-------CLR-RLERAHSEGVTSLVFSR----D-GSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSR 362 (512)
Q Consensus 296 ~-------~~~-~~~~~~~~~i~~~~~~~----~-~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 362 (512)
. .+. .+..........+++-| . ...|.+-+.||.+.+++-+.......+.. ---...+.|.+..+.
T Consensus 110 ~~~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~-~llPgPl~Y~~~tDs 188 (418)
T PF14727_consen 110 TVEHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD-FLLPGPLCYCPRTDS 188 (418)
T ss_pred CcccCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-CCCCcCeEEeecCCE
Confidence 1 111 11111233445555544 2 35788889999999998655443344443 222344788888889
Q ss_pred EEEEeCCCcEEEEeCCCCceee-----------------ecCCCCCCCCCCceeEEEEEcC---CCCCeEEEEcCCCcEE
Q 010362 363 VVTASSDCTVKVWDLKSTDCLQ-----------------TFKPPPPLRGGDASVNSVHLFP---KNPDHIVVCNKTSSIY 422 (512)
Q Consensus 363 l~~~~~dg~i~iwd~~~~~~~~-----------------~~~~~~~~~~~~~~i~~~~~~~---~~~~~l~~~~~~~~i~ 422 (512)
+++++.+..+..|......... .+.+. -.......+..+.... .....++. ....+.
T Consensus 189 fvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~d-Ws~nlGE~~l~i~v~~~~~~~~~IvvL--ger~Lf 265 (418)
T PF14727_consen 189 FVTASSSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPD-WSFNLGEQALDIQVVRFSSSESDIVVL--GERSLF 265 (418)
T ss_pred EEEecCceeEEEecHHHhhhccccccccccccccccccccccce-eEEECCceeEEEEEEEcCCCCceEEEE--ecceEE
Confidence 9999999899988753211110 00000 0001122333333322 22222332 344555
Q ss_pred EEecCCeEEEEeeCCcccCCcEEEEE-E------CCC-CCEEEEEeCCCeEEEEEcCCCeeEEeccccCCCeEEEEE---
Q 010362 423 IMTLQGQVVKSFSSGKREGGDFVAAC-V------SPK-GEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTH--- 491 (512)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~------s~~-g~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~--- 491 (512)
+.+..|.......- . ....+++ + .++ +..++.++.++.+.||.- .+++-.-+....+| ++..
T Consensus 266 ~l~~~G~l~~~krL-d---~~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~d--~~L~WsA~l~~~PV-al~v~~~ 338 (418)
T PF14727_consen 266 CLKDNGSLRFQKRL-D---YNPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYED--TTLVWSAQLPHVPV-ALSVANF 338 (418)
T ss_pred EEcCCCeEEEEEec-C---CceeeEEEEEeecccCCCCceEEEEEecCCeEEEEeC--CeEEEecCCCCCCE-EEEeccc
Confidence 55555533222221 1 1111211 1 122 125888999999999963 34444333333333 3333
Q ss_pred cCCCCeEEEEECCCeEEE
Q 010362 492 HPHRNLLATYGEDCTMKL 509 (512)
Q Consensus 492 ~p~~~~l~s~~~dg~i~i 509 (512)
..-..+|++-+.+|.+.+
T Consensus 339 ~~~~G~IV~Ls~~G~L~v 356 (418)
T PF14727_consen 339 NGLKGLIVSLSDEGQLSV 356 (418)
T ss_pred CCCCceEEEEcCCCcEEE
Confidence 334568889999998875
No 383
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.68 E-value=0.038 Score=50.37 Aligned_cols=217 Identities=13% Similarity=0.168 Sum_probs=119.1
Q ss_pred CCCeEEEEeCCCeEEEEEccCCeeeEEeccccccCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEe---------
Q 010362 274 DSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEF--------- 344 (512)
Q Consensus 274 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~--------- 344 (512)
.++.|+.|+.+| +.+++........... +...|..+...|+-+.+++-+ |+.++++++..-......
T Consensus 6 ~~~~L~vGt~~G-l~~~~~~~~~~~~~i~--~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~ 81 (275)
T PF00780_consen 6 WGDRLLVGTEDG-LYVYDLSDPSKPTRIL--KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSR 81 (275)
T ss_pred CCCEEEEEECCC-EEEEEecCCccceeEe--ecceEEEEEEecccCEEEEEc-CCccEEEEchhhccccccccccccccc
Confidence 467899999888 9999984333333332 334499999999888777766 599999998754433311
Q ss_pred -----eCCccceeEEE--EcCCCCEEEEEeCCCcEEEEeCCCC-----ceeeecCCCCCCCCCCceeEEEEEcCCCCCeE
Q 010362 345 -----RGHSSYVNDAI--FTNDGSRVVTASSDCTVKVWDLKST-----DCLQTFKPPPPLRGGDASVNSVHLFPKNPDHI 412 (512)
Q Consensus 345 -----~~~~~~v~~~~--~~~~~~~l~~~~~dg~i~iwd~~~~-----~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l 412 (512)
......+...+ -...+...+......+|.+|..... +..+.+.. ...+.++.|.+ +.+
T Consensus 82 ~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~l-------p~~~~~i~~~~---~~i 151 (275)
T PF00780_consen 82 SLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISL-------PDPPSSIAFLG---NKI 151 (275)
T ss_pred cccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEc-------CCCcEEEEEeC---CEE
Confidence 11122344444 1123334444444558999887653 23344332 35778888873 566
Q ss_pred EEEcCCCcEEEEecCCeEEEEeeCCccc---------CCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCeeEE--eccc
Q 010362 413 VVCNKTSSIYIMTLQGQVVKSFSSGKRE---------GGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEH--LMKV 481 (512)
Q Consensus 413 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~--~~~~ 481 (512)
+++..+ ...+.|+.......+...... ......+.--+++.+|++-. ..-.+.| ..|++.+ .+.-
T Consensus 152 ~v~~~~-~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Ll~~~--~~g~fv~-~~G~~~r~~~i~W 227 (275)
T PF00780_consen 152 CVGTSK-GFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLSDNEFLLCYD--NIGVFVN-KNGEPSRKSTIQW 227 (275)
T ss_pred EEEeCC-ceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeCCceEEEEec--ceEEEEc-CCCCcCcccEEEc
Confidence 666644 477778874333333221111 11122233334466666542 2333333 3444333 2222
Q ss_pred cCCCeEEEEEcCCCCeEEEEECCCeEEEecC
Q 010362 482 HEKDVIGVTHHPHRNLLATYGEDCTMKLWKP 512 (512)
Q Consensus 482 h~~~v~~v~~~p~~~~l~s~~~dg~i~iW~~ 512 (512)
...+.++++ ..++++..+. +.|-||+.
T Consensus 228 -~~~p~~~~~--~~pyli~~~~-~~iEV~~~ 254 (275)
T PF00780_consen 228 -SSAPQSVAY--SSPYLIAFSS-NSIEVRSL 254 (275)
T ss_pred -CCchhEEEE--ECCEEEEECC-CEEEEEEC
Confidence 234455555 3457776665 45888863
No 384
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=97.68 E-value=0.0093 Score=55.61 Aligned_cols=258 Identities=10% Similarity=0.083 Sum_probs=116.0
Q ss_pred ccceEEEecCc-CceEEEEEC-----------CCCCEEEEEe-CCCeEEEEEcCCC----eeeccccccccceeeccCcc
Q 010362 203 TLSHTIKFGTK-SHAECARFS-----------PDGQFLVSCS-FDGFIEVWDYLSG----KLKKDLQYQADETFMMHDET 265 (512)
Q Consensus 203 ~~~~~~~~~h~-~~v~~~~~s-----------~~~~~l~sg~-~dg~i~iwd~~~~----~~~~~~~~~~~~~~~~h~~~ 265 (512)
+.++++..++. +.....-|+ .+.++|+..+ ..+.|.|.|+.+. ++.+.+....... +..-..
T Consensus 53 qVIhrl~mp~~GDElHH~GWNaCSsc~~~~~~~~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~-k~g~s~ 131 (461)
T PF05694_consen 53 QVIHRLPMPNRGDELHHSGWNACSSCHYGDPSKERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFE-KTGLSR 131 (461)
T ss_dssp SEEEEEE-SSS---B---EES--GGSTT--TT--S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHH-HH-EEE
T ss_pred cEEEEEeCCCCCCccccccCcccccccCCCCcccCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHh-hcCCCC
Confidence 45666665554 455556665 2456777776 7889999998743 2222222110000 000112
Q ss_pred eeEEEEcCCCCeEEEEeC------CCeEEEEEccCCeeeEEecccc--ccCeEEEEEecCCCEEEEEeC-----------
Q 010362 266 VLCIEFSRDSEMLASGSQ------DGKIKVWRIRSGQCLRRLERAH--SEGVTSLVFSRDGSQILSTSF----------- 326 (512)
Q Consensus 266 v~~l~~s~~~~~l~s~~~------dg~i~vwd~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~l~~~~~----------- 326 (512)
...+..-|+|++++++-. -|.+.+.|-++.+......... ..--..+.|.|..+.+++...
T Consensus 132 PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~ 211 (461)
T PF05694_consen 132 PHTVHCLPDGRIMISALGDADGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFN 211 (461)
T ss_dssp EEEEEE-SS--EEEEEEEETTS-S--EEEEE-TTT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---
T ss_pred CceeeecCCccEEEEeccCCCCCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCC
Confidence 233444578888888632 2568888888777777765322 234567788898888887642
Q ss_pred ---------CCcEEEEeCCCCceeEEeeCCc--cceeEEEEc--CCCCEEEE-EeCCCcEEEE-eCCCCc----eeeecC
Q 010362 327 ---------DSTARIHGLKSGKLLKEFRGHS--SYVNDAIFT--NDGSRVVT-ASSDCTVKVW-DLKSTD----CLQTFK 387 (512)
Q Consensus 327 ---------dg~v~i~d~~~~~~~~~~~~~~--~~v~~~~~~--~~~~~l~~-~~~dg~i~iw-d~~~~~----~~~~~~ 387 (512)
..++.+||+.+.+.++++.-.. ..+..+.|. |+..+=++ +...++|-.| ....++ .+-.+.
T Consensus 212 ~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip 291 (461)
T PF05694_consen 212 PEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIP 291 (461)
T ss_dssp TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE-
T ss_pred hhHhhcccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECC
Confidence 3589999999999999887543 234556664 44444333 3334444444 323332 111221
Q ss_pred CCC----CC-------CCCCceeEEEEEcCCCCCeEEEEcCCCcEEEEecCCe----EEEEeeCC-c------------c
Q 010362 388 PPP----PL-------RGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQ----VVKSFSSG-K------------R 439 (512)
Q Consensus 388 ~~~----~~-------~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~----~~~~~~~~-~------------~ 439 (512)
... .+ .....-++.+.++.++..+.+++-..|.++.||+... ...+...+ . .
T Consensus 292 ~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~ 371 (461)
T PF05694_consen 292 AKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKR 371 (461)
T ss_dssp -EE--SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS----
T ss_pred CcccCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccc
Confidence 110 00 0113457899999999778888889999999999832 22222211 1 1
Q ss_pred cCCcEEEEEECCCCCEEEEEeC
Q 010362 440 EGGDFVAACVSPKGEWIYCVGE 461 (512)
Q Consensus 440 ~~~~~~~~~~s~~g~~l~~g~~ 461 (512)
-.+...-+..|.||+.|+..++
T Consensus 372 l~GgPqMvqlS~DGkRlYvTnS 393 (461)
T PF05694_consen 372 LRGGPQMVQLSLDGKRLYVTNS 393 (461)
T ss_dssp --S----EEE-TTSSEEEEE--
T ss_pred cCCCCCeEEEccCCeEEEEEee
Confidence 1123356788999999987763
No 385
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=97.67 E-value=6.6e-05 Score=62.57 Aligned_cols=138 Identities=11% Similarity=0.119 Sum_probs=88.2
Q ss_pred EEEEeCCCcEEEEeCCCCceeeecCCCCCCCCCCceeEEEEEcCCCCCeEEEEcCCCcEEEEecC--CeEEEEeeCCccc
Q 010362 363 VVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQ--GQVVKSFSSGKRE 440 (512)
Q Consensus 363 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~~~~~--~~~~~~~~~~~~~ 440 (512)
+...+.||.|+-++++..+....-. ..+.+..-.+.....+++|+.+|.+++|... +.....+....
T Consensus 33 l~~~sa~~~v~~~~~~k~k~s~rse---------~~~~e~~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~-- 101 (238)
T KOG2444|consen 33 LRATSADGLVRERKVRKHKESCRSE---------RFIDEGQRVVTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGE-- 101 (238)
T ss_pred hccccCCcccccchhhhhhhhhhhh---------hhhhcceeecccCceEEeecccceEEEecCCccchHHHhhhccc--
Confidence 4455678888888776533211100 1111222223344789999999999999887 33222222211
Q ss_pred CCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCeeEEeccccC-CCeEEEEEcCCCCeEEEE--ECCCeEEEec
Q 010362 441 GGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHE-KDVIGVTHHPHRNLLATY--GEDCTMKLWK 511 (512)
Q Consensus 441 ~~~~~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~-~~v~~v~~~p~~~~l~s~--~~dg~i~iW~ 511 (512)
......+....++.+.++++.||.|+.|++..++.+.....|. .++.....+..+.+++++ |.|..++.|+
T Consensus 102 e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ 175 (238)
T KOG2444|consen 102 ESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWN 175 (238)
T ss_pred ccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcc
Confidence 1112233334567789999999999999999998888877777 566666666666777777 7788888886
No 386
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=97.67 E-value=0.033 Score=48.79 Aligned_cols=118 Identities=14% Similarity=0.108 Sum_probs=78.4
Q ss_pred ceeEEEEcCCCCeEEEEeCCC--eEEEEEccCCeeeEEeccccccCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeE
Q 010362 265 TVLCIEFSRDSEMLASGSQDG--KIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLK 342 (512)
Q Consensus 265 ~v~~l~~s~~~~~l~s~~~dg--~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~ 342 (512)
-...+.|..+|.++-+.+.-| .|+.+|+.+|+..........---..++... ++.....=.++...+||..+.+.+.
T Consensus 46 FTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~-d~l~qLTWk~~~~f~yd~~tl~~~~ 124 (264)
T PF05096_consen 46 FTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILG-DKLYQLTWKEGTGFVYDPNTLKKIG 124 (264)
T ss_dssp EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEET-TEEEEEESSSSEEEEEETTTTEEEE
T ss_pred cCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEEC-CEEEEEEecCCeEEEEccccceEEE
Confidence 356888877888888888766 7999999999987766544444444555552 3344444557899999999998888
Q ss_pred EeeCCccceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeec
Q 010362 343 EFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTF 386 (512)
Q Consensus 343 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 386 (512)
++.- .+.-..++ .+++.|+.+.....++++|..+.+....+
T Consensus 125 ~~~y-~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i 165 (264)
T PF05096_consen 125 TFPY-PGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTI 165 (264)
T ss_dssp EEE--SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEE
T ss_pred EEec-CCcceEEE--cCCCEEEEECCccceEEECCcccceEEEE
Confidence 8864 34456666 45667777776778999998876654443
No 387
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.66 E-value=0.0011 Score=67.30 Aligned_cols=144 Identities=10% Similarity=0.148 Sum_probs=95.6
Q ss_pred CCEEEEE-eCCCcEEEEeCCCCceeeecCCCCCCCCCCceeEEEEEcC----CCCCeEEEEcCCCcEEEEecC--CeEEE
Q 010362 360 GSRVVTA-SSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFP----KNPDHIVVCNKTSSIYIMTLQ--GQVVK 432 (512)
Q Consensus 360 ~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~----~~~~~l~~~~~~~~i~~~~~~--~~~~~ 432 (512)
.+.|+.. .....|+-.|+..|+.+..+.... ..++..++-.. ..+...++|-.+..+..||.+ +..+.
T Consensus 493 ~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~-----~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v 567 (794)
T PF08553_consen 493 RNMILLDPNNPNKLYKMDLERGKVVEEWKVHD-----DIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLV 567 (794)
T ss_pred cceEeecCCCCCceEEEecCCCcEEEEeecCC-----CcceeEecccccccccCCCceEEEECCCceEEeccCCCCCcee
Confidence 3344333 345779999999999999988654 22344443321 123567888899999999998 32222
Q ss_pred -EeeCCcccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCeeEEeccccCCCeEEEEEcCCCCeEEEEECCCeEEEe
Q 010362 433 -SFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPHRNLLATYGEDCTMKLW 510 (512)
Q Consensus 433 -~~~~~~~~~~~~~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~~~dg~i~iW 510 (512)
.............|++-+.+| +||+|+.+|.|++||.-..+....+++-..+|.+|..+.||++++..+. ..+.++
T Consensus 568 ~~~~k~Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~-tyLlLi 644 (794)
T PF08553_consen 568 DSQSKQYSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATCK-TYLLLI 644 (794)
T ss_pred eccccccccCCCceEEEecCCc-eEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEeec-ceEEEE
Confidence 111122234557777777776 5899999999999995433333445666889999999999998876553 345444
No 388
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.64 E-value=0.0011 Score=67.62 Aligned_cols=103 Identities=21% Similarity=0.313 Sum_probs=77.8
Q ss_pred CCCeEEEEeCCCeEEEEEccCCeeeEEeccccccCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeeCCccceeE
Q 010362 274 DSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVND 353 (512)
Q Consensus 274 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~ 353 (512)
.+..++.|+..|.+-..|+...-..........++|++++|+.+|..++.|-.+|.|.+||+..++.++.+..|..+.+.
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~ 177 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTG 177 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccce
Confidence 35578888888999888876532211112234689999999999999999999999999999999999988877666555
Q ss_pred EE---EcCCCCEEEEEeCCCcEEEEeCC
Q 010362 354 AI---FTNDGSRVVTASSDCTVKVWDLK 378 (512)
Q Consensus 354 ~~---~~~~~~~l~~~~~dg~i~iwd~~ 378 (512)
+- +..++..++++...|. +|.+.
T Consensus 178 vi~v~~t~~nS~llt~D~~Gs--f~~lv 203 (1206)
T KOG2079|consen 178 VIFVGRTSQNSKLLTSDTGGS--FWKLV 203 (1206)
T ss_pred EEEEEEeCCCcEEEEccCCCc--eEEEE
Confidence 44 4556667888887775 66654
No 389
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=97.58 E-value=0.029 Score=47.36 Aligned_cols=207 Identities=9% Similarity=0.080 Sum_probs=116.4
Q ss_pred eEEEEeCCCeEEEEEccCCeeeEEeccccccCeEEEEEecCC--CEEEEEe-CCCcEEEEeCC--CCceeEEee---C--
Q 010362 277 MLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDG--SQILSTS-FDSTARIHGLK--SGKLLKEFR---G-- 346 (512)
Q Consensus 277 ~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~l~~~~-~dg~v~i~d~~--~~~~~~~~~---~-- 346 (512)
++.+--..|.|.-||+.+.+..+.-. ...+..++.+--.+ ..++++. ..-.|--||-. .....+++. .
T Consensus 29 Ll~VDi~ag~v~r~D~~qn~v~ra~i--e~p~~ag~ilpv~~~~q~~~v~~G~kf~i~nwd~~~~~a~v~~t~~ev~~d~ 106 (310)
T KOG4499|consen 29 LLYVDIEAGEVHRYDIEQNKVYRAKI--EGPPSAGFILPVEGGPQEFAVGCGSKFVIVNWDGVSESAKVYRTLFEVQPDR 106 (310)
T ss_pred EEEEEeccCceehhhhhhhheEEEEE--ecCcceeEEEEecCCCceEEEeecceEEEEEcccccceeeeeeeccccCchH
Confidence 34443445677778887765433322 12223334332222 2233333 22234446632 222333321 1
Q ss_pred CccceeEEEEcCCCCEEEEEeC---------CCcEEEEeCCCCceeeecCCCCCCCCCCceeEEEEEcCCCCCeEEEEcC
Q 010362 347 HSSYVNDAIFTNDGSRVVTASS---------DCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNK 417 (512)
Q Consensus 347 ~~~~v~~~~~~~~~~~l~~~~~---------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~ 417 (512)
...+.++-..+|+|++++-.-. .|.++.|-... + +..+ ...-.-.+.++|..+...+.++-+.
T Consensus 107 kknR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~h-~-v~~i------~~~v~IsNgl~Wd~d~K~fY~iDsl 178 (310)
T KOG4499|consen 107 KKNRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAGH-Q-VELI------WNCVGISNGLAWDSDAKKFYYIDSL 178 (310)
T ss_pred HhcccccCccCCCCceeeeeeccccccccccccEEEEeccCC-C-ceee------ehhccCCccccccccCcEEEEEccC
Confidence 2345667778999998543222 23444443321 1 1111 1122344678898877777788888
Q ss_pred CCcEEEEecC--Ce------EEEEeeCCcc-cCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCeeEEeccccCCCeEE
Q 010362 418 TSSIYIMTLQ--GQ------VVKSFSSGKR-EGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIG 488 (512)
Q Consensus 418 ~~~i~~~~~~--~~------~~~~~~~~~~-~~~~~~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~ 488 (512)
+-.|.-||.+ +. .+..+..... .....-.+++..+|++.++.-..|+|...|..+|+.+..++-....|++
T Consensus 179 n~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qits 258 (310)
T KOG4499|consen 179 NYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITS 258 (310)
T ss_pred ceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEE
Confidence 8888778843 22 1111111111 1112235677778998888889999999999999999999988999999
Q ss_pred EEEcC
Q 010362 489 VTHHP 493 (512)
Q Consensus 489 v~~~p 493 (512)
++|--
T Consensus 259 ccFgG 263 (310)
T KOG4499|consen 259 CCFGG 263 (310)
T ss_pred EEecC
Confidence 99975
No 390
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=97.57 E-value=0.07 Score=49.89 Aligned_cols=247 Identities=19% Similarity=0.211 Sum_probs=120.0
Q ss_pred ceEEEEECCCCCEEEEEeCCCeEEEEEcCCCeeeccccccccceeeccCcceeEEEEcCC---CCeEEEEeC-C------
Q 010362 215 HAECARFSPDGQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRD---SEMLASGSQ-D------ 284 (512)
Q Consensus 215 ~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~---~~~l~s~~~-d------ 284 (512)
..+.|+|.|||+++++ ...|.|++++ ..+.....+.... ............++++|+ +.+|..... .
T Consensus 3 ~P~~~a~~pdG~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~-~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~ 79 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVA-ERSGRIWVVD-KDGSLKTPVADLP-EVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGD 79 (331)
T ss_dssp SEEEEEEETTSCEEEE-ETTTEEEEEE-TTTEECEEEEE-T-TTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSS
T ss_pred CceEEEEeCCCcEEEE-eCCceEEEEe-CCCcCcceecccc-cccccccCCcccceeccccCCCCEEEEEEEcccCCCCC
Confidence 3678999999987775 5599999999 4444312111111 223345677899999994 233333322 1
Q ss_pred --CeEEEEEccCC-------eeeE-Eecc--ccccCeEEEEEecCCCEEEEEeCC-------------CcEEEEeCCCCc
Q 010362 285 --GKIKVWRIRSG-------QCLR-RLER--AHSEGVTSLVFSRDGSQILSTSFD-------------STARIHGLKSGK 339 (512)
Q Consensus 285 --g~i~vwd~~~~-------~~~~-~~~~--~~~~~i~~~~~~~~~~~l~~~~~d-------------g~v~i~d~~~~~ 339 (512)
..|.-|....+ +.+. .... .....-..+.|.|||.+.++.+.. |.|.-.+.. ++
T Consensus 80 ~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~d-G~ 158 (331)
T PF07995_consen 80 NDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGNDDNAQDPNSLRGKILRIDPD-GS 158 (331)
T ss_dssp EEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTTGGGGCSTTSSTTEEEEEETT-SS
T ss_pred cceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCCcccccccccccceEEEeccc-Cc
Confidence 24544554443 1111 1111 123456779999999666655533 233333322 21
Q ss_pred e-------------eEE-eeCCccceeEEEEcCC-CCEEEEE-eCCCcEEEEeCCCCcee----ee--------------
Q 010362 340 L-------------LKE-FRGHSSYVNDAIFTND-GSRVVTA-SSDCTVKVWDLKSTDCL----QT-------------- 385 (512)
Q Consensus 340 ~-------------~~~-~~~~~~~v~~~~~~~~-~~~l~~~-~~dg~i~iwd~~~~~~~----~~-------------- 385 (512)
. ... -.++.. ...++|+|. |.++++= +.++.=.|--+..+... ..
T Consensus 159 ~p~dnP~~~~~~~~~~i~A~GlRN-~~~~~~d~~tg~l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~~~~~~~~~~~~ 237 (331)
T PF07995_consen 159 IPADNPFVGDDGADSEIYAYGLRN-PFGLAFDPNTGRLWAADNGPDGWDEINRIEPGGNYGWPYCEGGPKYSGPPIGDAP 237 (331)
T ss_dssp B-TTSTTTTSTTSTTTEEEE--SE-EEEEEEETTTTEEEEEEE-SSSSEEEEEE-TT-B--TTTBSSSCSTTSS-ECTGS
T ss_pred CCCCCccccCCCceEEEEEeCCCc-cccEEEECCCCcEEEEccCCCCCcEEEEeccCCcCCCCCCcCCCCCCCCcccccc
Confidence 0 001 123333 457899998 5544331 22222222222222110 00
Q ss_pred ----cCCCCCCCCCCceeEEEEEcCCC------CCeEEEEcCCCcEEEEecC-CeEEE-EeeCCcccCCcEEEEEECCCC
Q 010362 386 ----FKPPPPLRGGDASVNSVHLFPKN------PDHIVVCNKTSSIYIMTLQ-GQVVK-SFSSGKREGGDFVAACVSPKG 453 (512)
Q Consensus 386 ----~~~~~~~~~~~~~i~~~~~~~~~------~~~l~~~~~~~~i~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~s~~g 453 (512)
+..+.....+...+..+.+.... ..+++.....+.|....+. +..+. ...........+..+++.|||
T Consensus 238 ~~~~~~~P~~~~~~~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG 317 (331)
T PF07995_consen 238 SCPGFVPPVFAYPPHSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDG 317 (331)
T ss_dssp S-TTS---SEEETTT--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTS
T ss_pred CCCCcCccceeecCccccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCC
Confidence 00000011223456666665432 2456666666788888776 32222 222122234468899999999
Q ss_pred CEEEEEeCCCeEE
Q 010362 454 EWIYCVGEDRNLY 466 (512)
Q Consensus 454 ~~l~~g~~dg~i~ 466 (512)
.+.++-..+|.|+
T Consensus 318 ~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 318 ALYVSDDSDGKIY 330 (331)
T ss_dssp EEEEEE-TTTTEE
T ss_pred eEEEEECCCCeEe
Confidence 9888888888774
No 391
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.54 E-value=0.033 Score=48.95 Aligned_cols=162 Identities=12% Similarity=0.132 Sum_probs=112.7
Q ss_pred cCcCceEEEEECCCCCEEEEEeCCCeEEEEEcCCCeeeccccccccceeeccCcceeEEEEcCCCCeEEEEeCCCeEEEE
Q 010362 211 GTKSHAECARFSPDGQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQDGKIKVW 290 (512)
Q Consensus 211 ~h~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~vw 290 (512)
|-...+.++.|+|+.+.|++......-.||=...|..+++++... -...-.+.+..+|.+.++--.++.+.++
T Consensus 83 g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g-------~~DpE~Ieyig~n~fvi~dER~~~l~~~ 155 (316)
T COG3204 83 GETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTG-------FSDPETIEYIGGNQFVIVDERDRALYLF 155 (316)
T ss_pred cccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccc-------cCChhHeEEecCCEEEEEehhcceEEEE
Confidence 555569999999999999999888888888778888888776432 2334567788888888888888999998
Q ss_pred EccCCeeeEEec--------ccc-ccCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeE---EeeCC-------ccce
Q 010362 291 RIRSGQCLRRLE--------RAH-SEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLK---EFRGH-------SSYV 351 (512)
Q Consensus 291 d~~~~~~~~~~~--------~~~-~~~i~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~---~~~~~-------~~~v 351 (512)
.+..+..+.... ..+ +.....++|.|....|+.+-...-+.+|.+....... ....+ -..|
T Consensus 156 ~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~Dv 235 (316)
T COG3204 156 TVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDV 235 (316)
T ss_pred EEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeecc
Confidence 887653322221 112 5678899999999999999888877777664332111 11111 1246
Q ss_pred eEEEEcC-CCCEEEEEeCCCcEEEEeCCC
Q 010362 352 NDAIFTN-DGSRVVTASSDCTVKVWDLKS 379 (512)
Q Consensus 352 ~~~~~~~-~~~~l~~~~~dg~i~iwd~~~ 379 (512)
.++.|++ .+..++-+.+++.+.-.|...
T Consensus 236 Sgl~~~~~~~~LLVLS~ESr~l~Evd~~G 264 (316)
T COG3204 236 SGLEFNAITNSLLVLSDESRRLLEVDLSG 264 (316)
T ss_pred ccceecCCCCcEEEEecCCceEEEEecCC
Confidence 7788886 455666777777777777653
No 392
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.53 E-value=0.0003 Score=41.41 Aligned_cols=39 Identities=44% Similarity=0.825 Sum_probs=34.1
Q ss_pred CceeEEeeCCccceeEEEEcCCCCEEEEEeCCCcEEEEe
Q 010362 338 GKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWD 376 (512)
Q Consensus 338 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd 376 (512)
+++...+..|...|.++.|.+++..+++++.|+.+++||
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 345667778888999999999999999999999999996
No 393
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=97.52 E-value=0.15 Score=52.36 Aligned_cols=288 Identities=13% Similarity=0.131 Sum_probs=155.4
Q ss_pred cCcCceEEEEECCCC------CEEEEEeCCCeEEEEEcC-CCeeeccccccccceeeccCcceeEEEEcCCCCeEEEEeC
Q 010362 211 GTKSHAECARFSPDG------QFLVSCSFDGFIEVWDYL-SGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQ 283 (512)
Q Consensus 211 ~h~~~v~~~~~s~~~------~~l~sg~~dg~i~iwd~~-~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~ 283 (512)
.....|.|+.++|-| +++|+|.++..+.+--.. +......... ....-...|.-..+-.|..+|.++..
T Consensus 528 ~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l----~~~~iPRSIl~~~~e~d~~yLlvalg 603 (1096)
T KOG1897|consen 528 EFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQL----SGEIIPRSILLTTFEGDIHYLLVALG 603 (1096)
T ss_pred eecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeecc----CCCccchheeeEEeeccceEEEEEcC
Confidence 446789999999842 378889887766655432 2222211100 01112345666667677889999999
Q ss_pred CCeEEEEEcc--CCeeeEEec-cccccCeEEEEEecCCCEEEEEeCCC--------------------------------
Q 010362 284 DGKIKVWRIR--SGQCLRRLE-RAHSEGVTSLVFSRDGSQILSTSFDS-------------------------------- 328 (512)
Q Consensus 284 dg~i~vwd~~--~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~dg-------------------------------- 328 (512)
||.+.-|.+. +|..-..-+ .-...|+.--.|+..+..-+.+..|.
T Consensus 604 dG~l~~fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n~kLv~spls~kev~~~c~f~s~a~ 683 (1096)
T KOG1897|consen 604 DGALLYFVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFALSDRPTVIYSSNGKLVYSPLSLKEVNHMCPFNSDAY 683 (1096)
T ss_pred CceEEEEEEEcccceEccccccccCCCCcEEEEEeeCCceEEEEeCCCCEEEEecCCcEEEeccchHHhhhhcccccccC
Confidence 9998776554 443211110 01123333333332222111111122
Q ss_pred ----------cEEEEeCCCCc--eeEEeeCCccceeEEEEcCCCCEEEEEeC-----------C---CcEEEEeCCCCce
Q 010362 329 ----------TARIHGLKSGK--LLKEFRGHSSYVNDAIFTNDGSRVVTASS-----------D---CTVKVWDLKSTDC 382 (512)
Q Consensus 329 ----------~v~i~d~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----------d---g~i~iwd~~~~~~ 382 (512)
.+.+.-+..-+ .++++.- ......+++.+....+.+.+. . ..++++|-.+.+.
T Consensus 684 ~d~l~~~~~~~l~i~tid~iqkl~irtvpl-~~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~v 762 (1096)
T KOG1897|consen 684 PDSLASANGGALTIGTIDEIQKLHIRTVPL-GESPRRICYQESSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEV 762 (1096)
T ss_pred CceEEEecCCceEEEEecchhhcceeeecC-CCChhheEecccceEEEEEecccccchhhcCCcceEEEEEEecCCceeE
Confidence 22222221110 1122221 223556667664444443321 1 1366777666554
Q ss_pred eeecCCCCCCCCCCceeEEEEEcCCCCCeEEEEc----------CCCcEEEEecCC-eEEEEeeCCcccCCcEEEEEECC
Q 010362 383 LQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCN----------KTSSIYIMTLQG-QVVKSFSSGKREGGDFVAACVSP 451 (512)
Q Consensus 383 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~----------~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~s~ 451 (512)
....+.... ....++.+..+..+...++++|+ ..|+|.++.... +.+........ .+.+.+++. -
T Consensus 763 l~~hef~~~--E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v-~Gav~aL~~-f 838 (1096)
T KOG1897|consen 763 LSSHEFERN--ETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVV-KGAVYALVE-F 838 (1096)
T ss_pred Eeecccccc--ceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeee-ccceeehhh-h
Confidence 443332211 12234555567777557777775 357888888774 54444444332 223333332 3
Q ss_pred CCCEEEEEeCCCeEEEEEcCCCeeEEeccccCCCeEEEEEcCCCCeEEEEECCCeEEE
Q 010362 452 KGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPHRNLLATYGEDCTMKL 509 (512)
Q Consensus 452 ~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~~~dg~i~i 509 (512)
+|+++|.- +..|++|+..+++.++.-..|..++..+...-.+..++.|.--+++.+
T Consensus 839 ngkllA~I--n~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitl 894 (1096)
T KOG1897|consen 839 NGKLLAGI--NQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITL 894 (1096)
T ss_pred CCeEEEec--CcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEE
Confidence 67777554 468999999998777777778888998888888999999887666544
No 394
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=97.49 E-value=0.018 Score=57.83 Aligned_cols=226 Identities=11% Similarity=0.079 Sum_probs=123.5
Q ss_pred CCCeEEEEeCC------CeEEEEEccCCeeeEEeccccccCeEEEEEecCCCEEEEEeCC------CcEEEEeCCCCcee
Q 010362 274 DSEMLASGSQD------GKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFD------STARIHGLKSGKLL 341 (512)
Q Consensus 274 ~~~~l~s~~~d------g~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d------g~v~i~d~~~~~~~ 341 (512)
.+.+++.|+.+ ..+..+|..++.............-.+++.. ++...++|+.| .++..||..+.+-.
T Consensus 284 ~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~ 362 (571)
T KOG4441|consen 284 SGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQWT 362 (571)
T ss_pred CCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEE-CCEEEEEccccCCCcccceEEEecCCCCcee
Confidence 34556666665 3678888888754443332334444455554 46778888888 35778888776633
Q ss_pred EEeeCCccceeEEE-EcCCCCEEEEEeCCCc-----EEEEeCCCCceeeecCCCCCCCCCCceeEEEEEcCCCCCeEEEE
Q 010362 342 KEFRGHSSYVNDAI-FTNDGSRVVTASSDCT-----VKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVC 415 (512)
Q Consensus 342 ~~~~~~~~~v~~~~-~~~~~~~l~~~~~dg~-----i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~ 415 (512)
. ...-..+-.... ..-+|...++||.||. +..||..+.+-...-. ......+.....-+..+.++|
T Consensus 363 ~-~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~-------m~~~r~~~gv~~~~g~iYi~G 434 (571)
T KOG4441|consen 363 P-VAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAP-------MLTRRSGHGVAVLGGKLYIIG 434 (571)
T ss_pred c-cCCccCccccceeEEECCEEEEEeccccccccccEEEecCCCCcccccCC-------CCcceeeeEEEEECCEEEEEc
Confidence 2 211111111111 1226778888988864 6778877654221111 111233333333344677777
Q ss_pred cCCC------cEEEEecCCeEEEEeeCCcccCCcEEEEEECCCCCEEEEEeCCC-----eEEEEEcCCCeeEEe--cccc
Q 010362 416 NKTS------SIYIMTLQGQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDR-----NLYCFSHQSGKLEHL--MKVH 482 (512)
Q Consensus 416 ~~~~------~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~dg-----~i~iwd~~~~~~~~~--~~~h 482 (512)
+.++ .+..||...+................ ...-++...+.||.|+ .|..||..+.+-... +...
T Consensus 435 G~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g--~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~ 512 (571)
T KOG4441|consen 435 GGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFG--VAVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSP 512 (571)
T ss_pred CcCCCccccceEEEEcCCCCceeecCCcccccccce--EEEECCEEEEECCccCCCccceEEEEcCCCCceeEcccCccc
Confidence 7554 46677777555544433332211111 3344677778888776 377888877654433 3323
Q ss_pred CCCeEEEEEcCCCCeEEEEECCCe-----EEEecC
Q 010362 483 EKDVIGVTHHPHRNLLATYGEDCT-----MKLWKP 512 (512)
Q Consensus 483 ~~~v~~v~~~p~~~~l~s~~~dg~-----i~iW~~ 512 (512)
...+..+.+ ++...+.||.||. |..|||
T Consensus 513 rs~~g~~~~--~~~ly~vGG~~~~~~l~~ve~ydp 545 (571)
T KOG4441|consen 513 RSAVGVVVL--GGKLYAVGGFDGNNNLNTVECYDP 545 (571)
T ss_pred cccccEEEE--CCEEEEEecccCccccceeEEcCC
Confidence 333333333 5677888888864 455554
No 395
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=97.49 E-value=0.066 Score=50.21 Aligned_cols=196 Identities=13% Similarity=0.166 Sum_probs=99.4
Q ss_pred CCCeEEEEe-CCCeEEEEEccC----CeeeEEecc--ccc----cCeEEEEEecCCCEEEEEeC------CCcEEEEeCC
Q 010362 274 DSEMLASGS-QDGKIKVWRIRS----GQCLRRLER--AHS----EGVTSLVFSRDGSQILSTSF------DSTARIHGLK 336 (512)
Q Consensus 274 ~~~~l~s~~-~dg~i~vwd~~~----~~~~~~~~~--~~~----~~i~~~~~~~~~~~l~~~~~------dg~v~i~d~~ 336 (512)
+.++|+..+ ..+.|.|.|+.+ .+..+.+.. -+. .....+-..|+|..++++-. -|.+.++|-+
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~ 165 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGE 165 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TT
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCc
Confidence 455677666 678899999874 344444431 011 22334445578888887532 2568888888
Q ss_pred CCceeEEeeCCc---cceeEEEEcCCCCEEEEEe--------------------CCCcEEEEeCCCCceeeecCCCCCCC
Q 010362 337 SGKLLKEFRGHS---SYVNDAIFTNDGSRVVTAS--------------------SDCTVKVWDLKSTDCLQTFKPPPPLR 393 (512)
Q Consensus 337 ~~~~~~~~~~~~---~~v~~~~~~~~~~~l~~~~--------------------~dg~i~iwd~~~~~~~~~~~~~~~~~ 393 (512)
+.+......... ..-.++-|.|..+.++|+. ...++.+||+.+.+..+++....
T Consensus 166 tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~--- 242 (461)
T PF05694_consen 166 TFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGE--- 242 (461)
T ss_dssp T--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-T---
T ss_pred cccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCC---
Confidence 777777665432 2345677888888888865 23579999999999999887543
Q ss_pred CCCceeEEEEEc--CCCCCeEEEEcCCCcEEEEec-C-Ce----EEEEeeCCc-------c-------cCCcEEEEEECC
Q 010362 394 GGDASVNSVHLF--PKNPDHIVVCNKTSSIYIMTL-Q-GQ----VVKSFSSGK-------R-------EGGDFVAACVSP 451 (512)
Q Consensus 394 ~~~~~i~~~~~~--~~~~~~l~~~~~~~~i~~~~~-~-~~----~~~~~~~~~-------~-------~~~~~~~~~~s~ 451 (512)
.......+.|. |....-++.+.-.+.|..|-- + +. .+..+.... . ...-++.+.+|.
T Consensus 243 -~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSl 321 (461)
T PF05694_consen 243 -EGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISL 321 (461)
T ss_dssp -TEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-T
T ss_pred -CCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEcc
Confidence 12344556654 444445666666677766654 2 21 111111100 0 023468899999
Q ss_pred CCCEEEEEe-CCCeEEEEEcCCC
Q 010362 452 KGEWIYCVG-EDRNLYCFSHQSG 473 (512)
Q Consensus 452 ~g~~l~~g~-~dg~i~iwd~~~~ 473 (512)
|.++|+..+ ..|.|+.||+.+.
T Consensus 322 DDrfLYvs~W~~GdvrqYDISDP 344 (461)
T PF05694_consen 322 DDRFLYVSNWLHGDVRQYDISDP 344 (461)
T ss_dssp TS-EEEEEETTTTEEEEEE-SST
T ss_pred CCCEEEEEcccCCcEEEEecCCC
Confidence 999999888 7999999999863
No 396
>PHA02713 hypothetical protein; Provisional
Probab=97.48 E-value=0.04 Score=55.54 Aligned_cols=198 Identities=12% Similarity=0.026 Sum_probs=99.2
Q ss_pred CCCeEEEEeCC------CeEEEEEccCCeeeEEeccccccCeEEEEEecCCCEEEEEeCCC-----cEEEEeCCCCceeE
Q 010362 274 DSEMLASGSQD------GKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDS-----TARIHGLKSGKLLK 342 (512)
Q Consensus 274 ~~~~l~s~~~d------g~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg-----~v~i~d~~~~~~~~ 342 (512)
++...+.||.+ ..+..||..++.....-.......-.+++ .-+|+..+.|+.++ .+..||..+.+-..
T Consensus 303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~-~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~ 381 (557)
T PHA02713 303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLA-VIDDTIYAIGGQNGTNVERTIECYTMGDDKWKM 381 (557)
T ss_pred CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEE-EECCEEEEECCcCCCCCCceEEEEECCCCeEEE
Confidence 56777777753 34778888776532211101111111222 23677778888764 47889987654322
Q ss_pred --EeeCCccceeEEEEcCCCCEEEEEeCCC-----------------------cEEEEeCCCCceeeecCCCCCCCCCCc
Q 010362 343 --EFRGHSSYVNDAIFTNDGSRVVTASSDC-----------------------TVKVWDLKSTDCLQTFKPPPPLRGGDA 397 (512)
Q Consensus 343 --~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----------------------~i~iwd~~~~~~~~~~~~~~~~~~~~~ 397 (512)
.+.........+. -+|...+.||.++ .+..||..+.+-...-..+.. ..
T Consensus 382 ~~~mp~~r~~~~~~~--~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~----r~ 455 (557)
T PHA02713 382 LPDMPIALSSYGMCV--LDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTG----TI 455 (557)
T ss_pred CCCCCcccccccEEE--ECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCcc----cc
Confidence 1111111111122 2567777777542 467788776542211111110 01
Q ss_pred eeEEEEEcCCCCCeEEEEcCC------CcEEEEecCC-eEEEEeeCCcccCCcEEEEEECCCCCEEEEEeCCC--eEEEE
Q 010362 398 SVNSVHLFPKNPDHIVVCNKT------SSIYIMTLQG-QVVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDR--NLYCF 468 (512)
Q Consensus 398 ~i~~~~~~~~~~~~l~~~~~~------~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~dg--~i~iw 468 (512)
. .+++.. +..+.++|+.+ ..+..||... .............. ..-...-+|+..++||.+| .+..|
T Consensus 456 ~-~~~~~~--~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~--~~~~~~~~~~iyv~Gg~~~~~~~e~y 530 (557)
T PHA02713 456 R-PGVVSH--KDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLS--ALHTILHDNTIMMLHCYESYMLQDTF 530 (557)
T ss_pred c-CcEEEE--CCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccc--cceeEEECCEEEEEeeecceeehhhc
Confidence 1 111211 22566666643 2356788775 44443333221111 1222233788888898888 78888
Q ss_pred EcCCCeeEEeccccC
Q 010362 469 SHQSGKLEHLMKVHE 483 (512)
Q Consensus 469 d~~~~~~~~~~~~h~ 483 (512)
|..+.+-...-..|.
T Consensus 531 d~~~~~W~~~~~~~~ 545 (557)
T PHA02713 531 NVYTYEWNHICHQHS 545 (557)
T ss_pred CcccccccchhhhcC
Confidence 888776554444444
No 397
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=97.46 E-value=0.08 Score=54.86 Aligned_cols=120 Identities=13% Similarity=0.166 Sum_probs=75.6
Q ss_pred CCCEEEEEeCCCeEEEEEcCCCeeecccccccccee-eccCcceeEEEEc----------------CCCCeEEEEeCCCe
Q 010362 224 DGQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETF-MMHDETVLCIEFS----------------RDSEMLASGSQDGK 286 (512)
Q Consensus 224 ~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~h~~~v~~l~~s----------------~~~~~l~s~~~dg~ 286 (512)
.+..++.++.++.|.-.|..+|+.+..+........ ..| .....+++. ..+..++.++.|+.
T Consensus 193 vgg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~-~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~ 271 (764)
T TIGR03074 193 VGDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQH-QTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDAR 271 (764)
T ss_pred ECCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccc-ccccceEEecCCcccccccccccccccCCEEEEecCCCe
Confidence 356777888899999999999988776554321110 001 011222221 13457888889999
Q ss_pred EEEEEccCCeeeEEeccccccCeE-------------EEEEec--CCCEEEEEeC----------CCcEEEEeCCCCcee
Q 010362 287 IKVWRIRSGQCLRRLERAHSEGVT-------------SLVFSR--DGSQILSTSF----------DSTARIHGLKSGKLL 341 (512)
Q Consensus 287 i~vwd~~~~~~~~~~~~~~~~~i~-------------~~~~~~--~~~~l~~~~~----------dg~v~i~d~~~~~~~ 341 (512)
+.-.|.++|+....+.. .+.+. .+.-.| .+..+++|+. +|.|+-+|.++|+.+
T Consensus 272 LiALDA~TGk~~W~fg~--~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~ 349 (764)
T TIGR03074 272 LIALDADTGKLCEDFGN--NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALV 349 (764)
T ss_pred EEEEECCCCCEEEEecC--CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEe
Confidence 99999999998877641 11110 111112 1345666643 688999999999999
Q ss_pred EEeeC
Q 010362 342 KEFRG 346 (512)
Q Consensus 342 ~~~~~ 346 (512)
..+..
T Consensus 350 W~~~~ 354 (764)
T TIGR03074 350 WAWDP 354 (764)
T ss_pred eEEec
Confidence 88763
No 398
>PHA02713 hypothetical protein; Provisional
Probab=97.43 E-value=0.024 Score=57.13 Aligned_cols=184 Identities=8% Similarity=0.084 Sum_probs=93.4
Q ss_pred CCCEEEEEeCC------CcEEEEeCCCCceeEEeeCCc-cceeEEEEcCCCCEEEEEeCCC-----cEEEEeCCCCceee
Q 010362 317 DGSQILSTSFD------STARIHGLKSGKLLKEFRGHS-SYVNDAIFTNDGSRVVTASSDC-----TVKVWDLKSTDCLQ 384 (512)
Q Consensus 317 ~~~~l~~~~~d------g~v~i~d~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~~~~~ 384 (512)
++..++.|+.+ ..+..||..+..-. .+..-. ..-......-+|+..+.||.++ .+..||..+.+-..
T Consensus 303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~-~~~~m~~~R~~~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~ 381 (557)
T PHA02713 303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHV-ELPPMIKNRCRFSLAVIDDTIYAIGGQNGTNVERTIECYTMGDDKWKM 381 (557)
T ss_pred CCEEEEEcCCCCCCCccceEEEEECCCCeEe-eCCCCcchhhceeEEEECCEEEEECCcCCCCCCceEEEEECCCCeEEE
Confidence 56677777753 34778888766432 111111 1111111223567777787654 47889988754322
Q ss_pred ecCCCCCCCCCCceeEEEEEcCCCCCeEEEEcCC-----------------------CcEEEEecCCeEEEEeeCCcccC
Q 010362 385 TFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKT-----------------------SSIYIMTLQGQVVKSFSSGKREG 441 (512)
Q Consensus 385 ~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~-----------------------~~i~~~~~~~~~~~~~~~~~~~~ 441 (512)
.-..+..... ...+.. ++.+.+.|+.+ ..+..||...............
T Consensus 382 ~~~mp~~r~~----~~~~~~---~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~- 453 (557)
T PHA02713 382 LPDMPIALSS----YGMCVL---DQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTG- 453 (557)
T ss_pred CCCCCccccc----ccEEEE---CCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCcc-
Confidence 1111111111 111111 33666666654 2466777765544433322111
Q ss_pred CcEEEEEECCCCCEEEEEeCC------CeEEEEEcCC-Ce--eEEeccccCCCeEEEEEcCCCCeEEEEECCC--eEEEe
Q 010362 442 GDFVAACVSPKGEWIYCVGED------RNLYCFSHQS-GK--LEHLMKVHEKDVIGVTHHPHRNLLATYGEDC--TMKLW 510 (512)
Q Consensus 442 ~~~~~~~~s~~g~~l~~g~~d------g~i~iwd~~~-~~--~~~~~~~h~~~v~~v~~~p~~~~l~s~~~dg--~i~iW 510 (512)
.....+..-+|+..+.||.+ ..+..||..+ .+ .+..+.........+.. ++.+.+.||.|| .+-.|
T Consensus 454 -r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~--~~~iyv~Gg~~~~~~~e~y 530 (557)
T PHA02713 454 -TIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTILH--DNTIMMLHCYESYMLQDTF 530 (557)
T ss_pred -cccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEEE--CCEEEEEeeecceeehhhc
Confidence 11122233456666667643 2467899886 43 33444433333333443 788899999888 56666
Q ss_pred cC
Q 010362 511 KP 512 (512)
Q Consensus 511 ~~ 512 (512)
||
T Consensus 531 d~ 532 (557)
T PHA02713 531 NV 532 (557)
T ss_pred Cc
Confidence 64
No 399
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.26 E-value=0.00075 Score=68.64 Aligned_cols=96 Identities=15% Similarity=0.238 Sum_probs=78.0
Q ss_pred CeEEEEcCCCcEEEEecCCeEEEEeeCCcccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCeeEEeccccCCCeEEE
Q 010362 410 DHIVVCNKTSSIYIMTLQGQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGV 489 (512)
Q Consensus 410 ~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v 489 (512)
..++.|+..|.+...|..++... +.......+++++++|+.+|..++.|-.+|.|.+||+..+++++.+..|..+.+++
T Consensus 100 ~~ivi~Ts~ghvl~~d~~~nL~~-~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~v 178 (1206)
T KOG2079|consen 100 VPIVIGTSHGHVLLSDMTGNLGP-LHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGV 178 (1206)
T ss_pred eeEEEEcCchhhhhhhhhcccch-hhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccceE
Confidence 57889999999999999877333 55555567899999999999999999999999999999999998887776665544
Q ss_pred ---EEcCCCCeEEEEECCCe
Q 010362 490 ---THHPHRNLLATYGEDCT 506 (512)
Q Consensus 490 ---~~~p~~~~l~s~~~dg~ 506 (512)
.+..++..+.++..-|.
T Consensus 179 i~v~~t~~nS~llt~D~~Gs 198 (1206)
T KOG2079|consen 179 IFVGRTSQNSKLLTSDTGGS 198 (1206)
T ss_pred EEEEEeCCCcEEEEccCCCc
Confidence 44456667888877775
No 400
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=97.25 E-value=0.08 Score=53.29 Aligned_cols=233 Identities=12% Similarity=0.109 Sum_probs=121.4
Q ss_pred CCCCCEEEEEeCC------CeEEEEEcCCCeeeccccccccceeeccCcceeEEEEcCCCCeEEEEeCC------CeEEE
Q 010362 222 SPDGQFLVSCSFD------GFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQD------GKIKV 289 (512)
Q Consensus 222 s~~~~~l~sg~~d------g~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d------g~i~v 289 (512)
+..+.+++.|+.+ ..+..||..++......... ....-.+++.. ++...++|+.| .++..
T Consensus 282 ~~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~-------~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~ 353 (571)
T KOG4441|consen 282 SVSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMP-------SPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVER 353 (571)
T ss_pred CCCCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCC-------cccccccEEEE-CCEEEEEccccCCCcccceEEE
Confidence 3456677777766 36888888777433322211 22223344444 45788888888 36778
Q ss_pred EEccCCeeeEEeccccccCe-EEEEEecCCCEEEEEeCCC-----cEEEEeCCCCceeEEeeCCccceeEEE-EcCCCCE
Q 010362 290 WRIRSGQCLRRLERAHSEGV-TSLVFSRDGSQILSTSFDS-----TARIHGLKSGKLLKEFRGHSSYVNDAI-FTNDGSR 362 (512)
Q Consensus 290 wd~~~~~~~~~~~~~~~~~i-~~~~~~~~~~~l~~~~~dg-----~v~i~d~~~~~~~~~~~~~~~~v~~~~-~~~~~~~ 362 (512)
||..+++-.. ...-..... .+++ .-+|...++|+.|| ++-.||..+.+--..-. ......+.. ..-+|..
T Consensus 354 YD~~~~~W~~-~a~M~~~R~~~~v~-~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~-m~~~r~~~gv~~~~g~i 430 (571)
T KOG4441|consen 354 YDPRTNQWTP-VAPMNTKRSDFGVA-VLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAP-MLTRRSGHGVAVLGGKL 430 (571)
T ss_pred ecCCCCceec-cCCccCccccceeE-EECCEEEEEeccccccccccEEEecCCCCcccccCC-CCcceeeeEEEEECCEE
Confidence 8888777333 221111111 1122 22688888999886 46778876554322111 111112221 2235777
Q ss_pred EEEEeCCC------cEEEEeCCCCceeeecCCCCCCCCCCceeEEEEEcCCCCCeEEEEcCCCc-----EEEEecCCeEE
Q 010362 363 VVTASSDC------TVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSS-----IYIMTLQGQVV 431 (512)
Q Consensus 363 l~~~~~dg------~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~-----i~~~~~~~~~~ 431 (512)
.++||.++ ++..||..++.-...-+......+ ..++. .+..++++|+.++. +..||......
T Consensus 431 Yi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~-----~g~a~--~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W 503 (571)
T KOG4441|consen 431 YIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSG-----FGVAV--LNGKIYVVGGFDGTSALSSVERYDPETNQW 503 (571)
T ss_pred EEEcCcCCCccccceEEEEcCCCCceeecCCccccccc-----ceEEE--ECCEEEEECCccCCCccceEEEEcCCCCce
Confidence 77777553 467888887653332221111111 11222 23367777777763 66777776555
Q ss_pred EEeeCCcccCCcEEEEEECCCCCEEEEEeCCC-----eEEEEEcCCCe
Q 010362 432 KSFSSGKREGGDFVAACVSPKGEWIYCVGEDR-----NLYCFSHQSGK 474 (512)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~dg-----~i~iwd~~~~~ 474 (512)
............ .-+..-++...++|+.|| +|..||..+.+
T Consensus 504 ~~v~~m~~~rs~--~g~~~~~~~ly~vGG~~~~~~l~~ve~ydp~~d~ 549 (571)
T KOG4441|consen 504 TMVAPMTSPRSA--VGVVVLGGKLYAVGGFDGNNNLNTVECYDPETDT 549 (571)
T ss_pred eEcccCcccccc--ccEEEECCEEEEEecccCccccceeEEcCCCCCc
Confidence 544322211111 112233566677777766 46666665544
No 401
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.23 E-value=0.23 Score=48.31 Aligned_cols=220 Identities=18% Similarity=0.208 Sum_probs=113.5
Q ss_pred ceeEEEEcCCCCeEEEE-eCCC----eEEEEEccCCeeeEEeccccccCeEEEEEecCCCEEEEEeCCC-----------
Q 010362 265 TVLCIEFSRDSEMLASG-SQDG----KIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDS----------- 328 (512)
Q Consensus 265 ~v~~l~~s~~~~~l~s~-~~dg----~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg----------- 328 (512)
.+...+++|||+++|.+ +..| .++++|+.+|+.+.... .......+.|.++++.|+....+.
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i--~~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~ 202 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGI--ENPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPR 202 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEE--EEEESEEEEECTTSSEEEEEECSTTTSS-CCGCCE
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcc--cccccceEEEeCCCCEEEEEEeCcccccccCCCCc
Confidence 34468899999998866 3334 59999999998765432 122223499999998887775443
Q ss_pred cEEEEeCCCCcee--EEeeCCccc--eeEEEEcCCCCEEEEEeCC----CcEEEEeCCCC----ceeeecCCCCCCCCCC
Q 010362 329 TARIHGLKSGKLL--KEFRGHSSY--VNDAIFTNDGSRVVTASSD----CTVKVWDLKST----DCLQTFKPPPPLRGGD 396 (512)
Q Consensus 329 ~v~i~d~~~~~~~--~~~~~~~~~--v~~~~~~~~~~~l~~~~~d----g~i~iwd~~~~----~~~~~~~~~~~~~~~~ 396 (512)
.|+.|.+.+...- ..+...... ...+..++++++++..... ..+.+.|+..+ .....+... ..
T Consensus 203 ~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~-----~~ 277 (414)
T PF02897_consen 203 QVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPR-----ED 277 (414)
T ss_dssp EEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEES-----SS
T ss_pred EEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCC-----CC
Confidence 3788888766432 344443332 5678889999987754332 34777787764 111121111 11
Q ss_pred ceeEEEEEcCCCCCeEEEEcC---CCcEEEEecCCeE---EE-EeeCCcccCCcEEEEEECCCCCEEEEE-eCCC--eEE
Q 010362 397 ASVNSVHLFPKNPDHIVVCNK---TSSIYIMTLQGQV---VK-SFSSGKREGGDFVAACVSPKGEWIYCV-GEDR--NLY 466 (512)
Q Consensus 397 ~~i~~~~~~~~~~~~l~~~~~---~~~i~~~~~~~~~---~~-~~~~~~~~~~~~~~~~~s~~g~~l~~g-~~dg--~i~ 466 (512)
.....+... +..+++.... .+.|...++.... .. .+.... ....+..+. ..+.+|+.. ..++ .|+
T Consensus 278 ~~~~~v~~~--~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~-~~~~l~~~~--~~~~~Lvl~~~~~~~~~l~ 352 (414)
T PF02897_consen 278 GVEYYVDHH--GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPED-EDVSLEDVS--LFKDYLVLSYRENGSSRLR 352 (414)
T ss_dssp S-EEEEEEE--TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--S-SSEEEEEEE--EETTEEEEEEEETTEEEEE
T ss_pred ceEEEEEcc--CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCC-CceeEEEEE--EECCEEEEEEEECCccEEE
Confidence 222223222 3234443332 2445555555221 12 222211 111233333 344445444 4555 588
Q ss_pred EEEcCCCeeEEeccc-cCCCeEEEEEcCCCC
Q 010362 467 CFSHQSGKLEHLMKV-HEKDVIGVTHHPHRN 496 (512)
Q Consensus 467 iwd~~~~~~~~~~~~-h~~~v~~v~~~p~~~ 496 (512)
++++..+.....+.. -.+.|..+...++++
T Consensus 353 v~~~~~~~~~~~~~~p~~g~v~~~~~~~~~~ 383 (414)
T PF02897_consen 353 VYDLDDGKESREIPLPEAGSVSGVSGDFDSD 383 (414)
T ss_dssp EEETT-TEEEEEEESSSSSEEEEEES-TT-S
T ss_pred EEECCCCcEEeeecCCcceEEeccCCCCCCC
Confidence 999883444433332 234466666555544
No 402
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.17 E-value=0.017 Score=54.57 Aligned_cols=138 Identities=13% Similarity=0.181 Sum_probs=94.1
Q ss_pred EEEeCCCeEEEEEcCCCeeeccccccccceeeccCcceeEEEEcCCCC-------eEEEEeCCCeEEEEEccCCee-eEE
Q 010362 229 VSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSE-------MLASGSQDGKIKVWRIRSGQC-LRR 300 (512)
Q Consensus 229 ~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~-------~l~s~~~dg~i~vwd~~~~~~-~~~ 300 (512)
.++.....++-.|++.|+.+....+ |.. |+-+.+.|+.+ .-+.|-.|..|.-||.+-... +..
T Consensus 350 ~~~~~~~~l~klDIE~GKIVeEWk~--------~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~ 420 (644)
T KOG2395|consen 350 MDGGEQDKLYKLDIERGKIVEEWKF--------EDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLA 420 (644)
T ss_pred eCCCCcCcceeeecccceeeeEeec--------cCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceee
Confidence 3455556788889999998877664 443 77777877543 123455678899999863221 111
Q ss_pred eccc----cccCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCc-eeEEeeCCccceeEEEEcCCCCEEEEEeCCCcEEEE
Q 010362 301 LERA----HSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGK-LLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVW 375 (512)
Q Consensus 301 ~~~~----~~~~i~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw 375 (512)
.... ......|.+-..+| +|++||.+|.|++||- .+. ....+++...+|..+..+.+|++++..+ +..+.+.
T Consensus 421 ~~q~kqy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc-~tyLlLi 497 (644)
T KOG2395|consen 421 VVQSKQYSTKNNFSCFATTESG-YIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILATC-KTYLLLI 497 (644)
T ss_pred eeeccccccccccceeeecCCc-eEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEec-ccEEEEE
Confidence 1111 23445666665555 8999999999999997 444 3445677888999999999999888766 4567776
Q ss_pred eCC
Q 010362 376 DLK 378 (512)
Q Consensus 376 d~~ 378 (512)
++.
T Consensus 498 ~t~ 500 (644)
T KOG2395|consen 498 DTL 500 (644)
T ss_pred EEe
Confidence 654
No 403
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=97.15 E-value=0.25 Score=47.09 Aligned_cols=143 Identities=15% Similarity=0.139 Sum_probs=79.4
Q ss_pred ceEEEEECCCCCEEEEEe-----------CCC-eEEEEEcCC--CeeeccccccccceeeccCcceeEEEEcCCCCeEEE
Q 010362 215 HAECARFSPDGQFLVSCS-----------FDG-FIEVWDYLS--GKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLAS 280 (512)
Q Consensus 215 ~v~~~~~s~~~~~l~sg~-----------~dg-~i~iwd~~~--~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s 280 (512)
....++|.++|+++++-. ..+ .|.+++-.+ |.... ...+...-.....+++.+++ +++
T Consensus 15 ~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~------~~vfa~~l~~p~Gi~~~~~G-lyV- 86 (367)
T TIGR02604 15 NPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDK------SNVFAEELSMVTGLAVAVGG-VYV- 86 (367)
T ss_pred CCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcce------eEEeecCCCCccceeEecCC-EEE-
Confidence 466789999999877653 223 777776433 22111 01222233456889999988 444
Q ss_pred EeCCCeEEEE-EccCC-----e--ee-EEeccc---cccCeEEEEEecCCCEEEEEeCC-------------------Cc
Q 010362 281 GSQDGKIKVW-RIRSG-----Q--CL-RRLERA---HSEGVTSLVFSRDGSQILSTSFD-------------------ST 329 (512)
Q Consensus 281 ~~~dg~i~vw-d~~~~-----~--~~-~~~~~~---~~~~i~~~~~~~~~~~l~~~~~d-------------------g~ 329 (512)
++.. .|..+ |.... + .+ ..+... +......++|.|||.+.++-+.. |.
T Consensus 87 ~~~~-~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~ 165 (367)
T TIGR02604 87 ATPP-DILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGG 165 (367)
T ss_pred eCCC-eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCce
Confidence 4444 34433 44211 1 11 122211 13447789999999876654421 44
Q ss_pred EEEEeCCCCceeEEeeCCccceeEEEEcCCCCEEEEEe
Q 010362 330 ARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTAS 367 (512)
Q Consensus 330 v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 367 (512)
|.-++..+++....-.++ .....++|+|+|+++++-.
T Consensus 166 i~r~~pdg~~~e~~a~G~-rnp~Gl~~d~~G~l~~tdn 202 (367)
T TIGR02604 166 LFRYNPDGGKLRVVAHGF-QNPYGHSVDSWGDVFFCDN 202 (367)
T ss_pred EEEEecCCCeEEEEecCc-CCCccceECCCCCEEEEcc
Confidence 666666544432222333 2356899999998876644
No 404
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=97.04 E-value=0.0025 Score=39.38 Aligned_cols=30 Identities=20% Similarity=0.391 Sum_probs=27.9
Q ss_pred cCceEEEEECCCCCEEEEEeCCCeEEEEEc
Q 010362 213 KSHAECARFSPDGQFLVSCSFDGFIEVWDY 242 (512)
Q Consensus 213 ~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~ 242 (512)
...|.+++|+|..++||.|+.+|.|.+|.+
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl 40 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL 40 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC
Confidence 456999999999999999999999999998
No 405
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.04 E-value=0.013 Score=55.32 Aligned_cols=141 Identities=16% Similarity=0.174 Sum_probs=93.1
Q ss_pred EEeCCCcEEEEeCCCCceeEEeeCCccceeEEEEcCCCC-------EEEEEeCCCcEEEEeCCCCce-eeecCCCCCCCC
Q 010362 323 STSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGS-------RVVTASSDCTVKVWDLKSTDC-LQTFKPPPPLRG 394 (512)
Q Consensus 323 ~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~-------~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~ 394 (512)
.+.....++-.|++.|+.+.+++-+.. |+-+.+.|+.+ .-+.|-.|..|.-||.|-... ......... ..
T Consensus 351 ~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kq-y~ 428 (644)
T KOG2395|consen 351 DGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQ-YS 428 (644)
T ss_pred CCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeeccc-cc
Confidence 444556789999999999999998776 77778888653 234566678899999884322 000000000 01
Q ss_pred CCceeEEEEEcCCCCCeEEEEcCCCcEEEEecCCeEEEEeeCCcccCCcEEEEEECCCCCEEEEEeCCCeEEEEEc
Q 010362 395 GDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSH 470 (512)
Q Consensus 395 ~~~~i~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~dg~i~iwd~ 470 (512)
......|.+ ..+..++++|+.+|.|++||--+...++...+ -+.+|..+..+.+|++|++.+. ..+.+.++
T Consensus 429 ~k~nFsc~a--TT~sG~IvvgS~~GdIRLYdri~~~AKTAlPg--LG~~I~hVdvtadGKwil~Tc~-tyLlLi~t 499 (644)
T KOG2395|consen 429 TKNNFSCFA--TTESGYIVVGSLKGDIRLYDRIGRRAKTALPG--LGDAIKHVDVTADGKWILATCK-TYLLLIDT 499 (644)
T ss_pred cccccceee--ecCCceEEEeecCCcEEeehhhhhhhhhcccc--cCCceeeEEeeccCcEEEEecc-cEEEEEEE
Confidence 112233333 34457999999999999999866555544443 3678999999999999987774 45555544
No 406
>PRK10115 protease 2; Provisional
Probab=97.00 E-value=0.57 Score=48.64 Aligned_cols=240 Identities=10% Similarity=0.037 Sum_probs=119.8
Q ss_pred ceEEEEECCCCCEEEEEeCC-----CeEEEEEcCCCeeeccccccccceeeccCcceeEEEEcCCCCeEEEEeCC-----
Q 010362 215 HAECARFSPDGQFLVSCSFD-----GFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQD----- 284 (512)
Q Consensus 215 ~v~~~~~s~~~~~l~sg~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d----- 284 (512)
.+..+.+||||++|+.+... ..|++-|+.++...... + ...-..++|++|++.|+.+..+
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~-------i---~~~~~~~~w~~D~~~~~y~~~~~~~~~ 197 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPEL-------L---DNVEPSFVWANDSWTFYYVRKHPVTLL 197 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCcc-------c---cCcceEEEEeeCCCEEEEEEecCCCCC
Confidence 36678899999999876432 36888898877532211 1 1111469999999877666442
Q ss_pred -CeEEEEEccCC--eeeEEeccccccCeE-EEEEecCCCEEEEEeC---CCcEEEEeCC--CCceeEEeeCCccceeEEE
Q 010362 285 -GKIKVWRIRSG--QCLRRLERAHSEGVT-SLVFSRDGSQILSTSF---DSTARIHGLK--SGKLLKEFRGHSSYVNDAI 355 (512)
Q Consensus 285 -g~i~vwd~~~~--~~~~~~~~~~~~~i~-~~~~~~~~~~l~~~~~---dg~v~i~d~~--~~~~~~~~~~~~~~v~~~~ 355 (512)
..|..+++.++ +....+. ....... ....+.++++++..+. ++.+.+++.. ++.....+.........+.
T Consensus 198 ~~~v~~h~lgt~~~~d~lv~~-e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (686)
T PRK10115 198 PYQVWRHTIGTPASQDELVYE-EKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLD 276 (686)
T ss_pred CCEEEEEECCCChhHCeEEEe-eCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEE
Confidence 36788888877 3333333 2222233 3333447877665543 3578888843 3332222222222222222
Q ss_pred EcCCCCEEEEEeCC-C--cEEEEeCCCCceeeecCCCCCCCCCCceeEEEEEcCCCCCeEEEEcCCCcEEEE--ecCCeE
Q 010362 356 FTNDGSRVVTASSD-C--TVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIM--TLQGQV 430 (512)
Q Consensus 356 ~~~~~~~l~~~~~d-g--~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~~--~~~~~~ 430 (512)
+..+.+++....+ . .|...++........+.+. .....+..+.+. +..++++...++.-.++ +..+..
T Consensus 277 -~~~~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~----~~~~~i~~~~~~--~~~l~~~~~~~g~~~l~~~~~~~~~ 349 (686)
T PRK10115 277 -HYQHRFYLRSNRHGKNFGLYRTRVRDEQQWEELIPP----RENIMLEGFTLF--TDWLVVEERQRGLTSLRQINRKTRE 349 (686)
T ss_pred -eCCCEEEEEEcCCCCCceEEEecCCCcccCeEEECC----CCCCEEEEEEEE--CCEEEEEEEeCCEEEEEEEcCCCCc
Confidence 2223333332221 2 2333344321111111111 123467777776 32566666667765554 443433
Q ss_pred EEEeeCCcccCCcEEEEEEC--CCCC-EEEEEe---CCCeEEEEEcCCCe
Q 010362 431 VKSFSSGKREGGDFVAACVS--PKGE-WIYCVG---EDRNLYCFSHQSGK 474 (512)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~s--~~g~-~l~~g~---~dg~i~iwd~~~~~ 474 (512)
...+.... ...+..+..+ +++. ++++.+ .-+.++.+|..+++
T Consensus 350 ~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~ 397 (686)
T PRK10115 350 VIGIAFDD--PAYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGE 397 (686)
T ss_pred eEEecCCC--CceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCCc
Confidence 33332111 1112223333 4444 444333 45679999988765
No 407
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.98 E-value=0.003 Score=39.03 Aligned_cols=35 Identities=26% Similarity=0.559 Sum_probs=30.6
Q ss_pred cCcceeEEEEcCCCCeEEEEeCCCeEEEEEccCCee
Q 010362 262 HDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQC 297 (512)
Q Consensus 262 h~~~v~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~ 297 (512)
....|.+++|+|..++||.++.+|.|.++.+ +++.
T Consensus 10 l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 10 LPSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence 3457999999999999999999999999998 5553
No 408
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=96.95 E-value=0.033 Score=55.49 Aligned_cols=112 Identities=21% Similarity=0.283 Sum_probs=74.0
Q ss_pred ceeEEEEcCCCCeEEEEeCCCeEEEEEccCCeeeEEeccccccCeEEEEEe--cCCCEEEEEeCCCcEEEEeCC------
Q 010362 265 TVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFS--RDGSQILSTSFDSTARIHGLK------ 336 (512)
Q Consensus 265 ~v~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~l~~~~~dg~v~i~d~~------ 336 (512)
.++-+.-+.-++.-++-+....+.|||...+.....-.....+.|.++.|. |+++.+++.+..+.|.+|.-.
T Consensus 31 ~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~ 110 (631)
T PF12234_consen 31 NPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTN 110 (631)
T ss_pred CcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhc
Confidence 344444444444444444455899999998875544433457899999996 588899999999999988431
Q ss_pred ---CCceeEEe--eCCc-cceeEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 010362 337 ---SGKLLKEF--RGHS-SYVNDAIFTNDGSRVVTASSDCTVKVWDLK 378 (512)
Q Consensus 337 ---~~~~~~~~--~~~~-~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 378 (512)
+...++.+ ..|+ .+|.+..|.++|..++.++ +.+.|+|-.
T Consensus 111 ~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sG--Nqlfv~dk~ 156 (631)
T PF12234_consen 111 KGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSG--NQLFVFDKW 156 (631)
T ss_pred CCcccceeEEEEeecCCCCCccceeEecCCeEEEEeC--CEEEEECCC
Confidence 11233333 3343 5799999999997655544 468888743
No 409
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.88 E-value=0.18 Score=50.23 Aligned_cols=201 Identities=15% Similarity=0.225 Sum_probs=103.7
Q ss_pred CCeEEEEEccCCeeeEEeccccccCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEe----eCCccceeEEEEcCC
Q 010362 284 DGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEF----RGHSSYVNDAIFTND 359 (512)
Q Consensus 284 dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~----~~~~~~v~~~~~~~~ 359 (512)
--.|+|+++ +|..+.++.-.| ..+..+.|+.+. .|++...+|++++|++- |+.+... ......|..+.+..+
T Consensus 63 ~~~I~If~~-sG~lL~~~~w~~-~~lI~mgWs~~e-eLI~v~k~g~v~Vy~~~-ge~ie~~svg~e~~~~~I~ec~~f~~ 138 (829)
T KOG2280|consen 63 RPYIRIFNI-SGQLLGRILWKH-GELIGMGWSDDE-ELICVQKDGTVHVYGLL-GEFIESNSVGFESQMSDIVECRFFHN 138 (829)
T ss_pred ceeEEEEec-cccchHHHHhcC-CCeeeecccCCc-eEEEEeccceEEEeecc-hhhhcccccccccccCceeEEEEecC
Confidence 346888885 577777665334 488899999665 56777889999999984 4443332 112233555555555
Q ss_pred CCEEEEEeCCCcEEEEeCCCCceeeecCCCCCCCCCCceeEEEEEcCCCCCeEEEEcCCCc--EEEEecCCeEEEEeeCC
Q 010362 360 GSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSS--IYIMTLQGQVVKSFSSG 437 (512)
Q Consensus 360 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~--i~~~~~~~~~~~~~~~~ 437 (512)
| ++.-..+|.+.+-+-.......+.+..+ ....+.++....+.+......-.-+-. ..+.-....... ....
T Consensus 139 G--Vavlt~~g~v~~i~~~~~~~~~~~~diP---~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~~q-~~~~ 212 (829)
T KOG2280|consen 139 G--VAVLTVSGQVILINGVEEPKLRKMPDIP---YNELPKSCWTVFQPHRQSTILLDVDVAVGLHICQVEESRVQ-LHAL 212 (829)
T ss_pred c--eEEEecCCcEEEEcCCCcchhhhCCCCC---CccCCCcceeEecCCCcceeEEeechhhhhcccceeccccc-cccc
Confidence 5 3333445555544322222223333211 111122333333322111111111100 011111111000 1111
Q ss_pred cccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCeeEEecccc-CCCeEEEEEcCC
Q 010362 438 KREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVH-EKDVIGVTHHPH 494 (512)
Q Consensus 438 ~~~~~~~~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~h-~~~v~~v~~~p~ 494 (512)
......+..+.+||+.++|+--...|.|.+-+....+....+... ..+...++|..+
T Consensus 213 ~~~~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~~~~~~~p~qm~Wcgn 270 (829)
T KOG2280|consen 213 SWPNSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFNCTDHDPPKQMAWCGN 270 (829)
T ss_pred CCCCceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccCCCCCCchHhceeecC
Confidence 112356889999999999999999999999988877766655421 122225555543
No 410
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=96.82 E-value=0.73 Score=48.03 Aligned_cols=113 Identities=13% Similarity=0.229 Sum_probs=76.0
Q ss_pred CCeEEEEeCCCeEEEEEccCCeeeEEecccccc-------CeEEEEEec----------------CCCEEEEEeCCCcEE
Q 010362 275 SEMLASGSQDGKIKVWRIRSGQCLRRLERAHSE-------GVTSLVFSR----------------DGSQILSTSFDSTAR 331 (512)
Q Consensus 275 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~-------~i~~~~~~~----------------~~~~l~~~~~dg~v~ 331 (512)
+..++.++.++.|.-.|..+|+.+.++...... ....+++.. .+..++.++.|+.+.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 557778888899999999999988887632111 122233321 234788899999999
Q ss_pred EEeCCCCceeEEeeCCcccee-------------EEEEcC--CCCEEEEEeC----------CCcEEEEeCCCCceeeec
Q 010362 332 IHGLKSGKLLKEFRGHSSYVN-------------DAIFTN--DGSRVVTASS----------DCTVKVWDLKSTDCLQTF 386 (512)
Q Consensus 332 i~d~~~~~~~~~~~~~~~~v~-------------~~~~~~--~~~~l~~~~~----------dg~i~iwd~~~~~~~~~~ 386 (512)
-.|.++|+.+..+.. ++.|. .+.-.| .+..+++|+. +|.|+-+|.++|+....+
T Consensus 274 ALDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~ 352 (764)
T TIGR03074 274 ALDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAW 352 (764)
T ss_pred EEECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEE
Confidence 999999999877642 11110 011112 1345666643 688999999999998887
Q ss_pred CC
Q 010362 387 KP 388 (512)
Q Consensus 387 ~~ 388 (512)
..
T Consensus 353 ~~ 354 (764)
T TIGR03074 353 DP 354 (764)
T ss_pred ec
Confidence 64
No 411
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=96.79 E-value=0.77 Score=47.43 Aligned_cols=75 Identities=16% Similarity=0.149 Sum_probs=53.1
Q ss_pred CcceeEEEEcCCCCeEEEEeCCCeEEEEEccC----------Cee--eE-Ee-------ccccccCeEEEEEecC---CC
Q 010362 263 DETVLCIEFSRDSEMLASGSQDGKIKVWRIRS----------GQC--LR-RL-------ERAHSEGVTSLVFSRD---GS 319 (512)
Q Consensus 263 ~~~v~~l~~s~~~~~l~s~~~dg~i~vwd~~~----------~~~--~~-~~-------~~~~~~~i~~~~~~~~---~~ 319 (512)
.-.|..+..+|+|++++..|..| |.|..+.. |+. .. ++ .......|..+.|+|. +.
T Consensus 84 ~f~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~ 162 (717)
T PF10168_consen 84 LFEVHQISLNPTGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDS 162 (717)
T ss_pred ceeEEEEEECCCCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCC
Confidence 34689999999999999998765 44444421 111 11 11 1133457899999995 58
Q ss_pred EEEEEeCCCcEEEEeCCCC
Q 010362 320 QILSTSFDSTARIHGLKSG 338 (512)
Q Consensus 320 ~l~~~~~dg~v~i~d~~~~ 338 (512)
+|++-+.|+++++||+...
T Consensus 163 ~l~vLtsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 163 HLVVLTSDNTLRLYDISDP 181 (717)
T ss_pred eEEEEecCCEEEEEecCCC
Confidence 8999999999999999654
No 412
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=96.79 E-value=0.58 Score=45.54 Aligned_cols=123 Identities=11% Similarity=0.137 Sum_probs=74.9
Q ss_pred cCcCceEEEEECCC----CCEEEEEeCCCeEEEEEcCCC-----eeeccccccccceeeccCcceeEEEEcCCCCeEEEE
Q 010362 211 GTKSHAECARFSPD----GQFLVSCSFDGFIEVWDYLSG-----KLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASG 281 (512)
Q Consensus 211 ~h~~~v~~~~~s~~----~~~l~sg~~dg~i~iwd~~~~-----~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~ 281 (512)
|.-..|..+.|.|- -..|.+......|.||.+... +.......+..+. ..---..+.|+|....|++-
T Consensus 54 GqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~---~pvLpQGCVWHPk~~iL~VL 130 (671)
T PF15390_consen 54 GQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREP---FPVLPQGCVWHPKKAILTVL 130 (671)
T ss_pred eccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCC---cccCCCcccccCCCceEEEE
Confidence 55566999999994 223444455789999987521 2111111100000 11112567899999988887
Q ss_pred eCCCeEEEEEccCCeeeEEeccccccCeEEEEEecCCCEEEEEeCC-CcEEEEeCC
Q 010362 282 SQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFD-STARIHGLK 336 (512)
Q Consensus 282 ~~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-g~v~i~d~~ 336 (512)
.....-.++++.......+......+-|.|.+|.+||+.|+++-.. =.-++||-.
T Consensus 131 T~~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~ 186 (671)
T PF15390_consen 131 TARDVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSA 186 (671)
T ss_pred ecCceeEeeeeeeCCceEEEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecCc
Confidence 7665556666654433222222467889999999999998876433 346788853
No 413
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=96.77 E-value=0.082 Score=44.76 Aligned_cols=93 Identities=14% Similarity=0.198 Sum_probs=65.3
Q ss_pred eeEEEEcCCCCeEEEE-eCCCeEEEEE--ccCCee-----eEEecc--c-cccCeEEEEEecCCCEEEEEeCCCcEEEEe
Q 010362 266 VLCIEFSRDSEMLASG-SQDGKIKVWR--IRSGQC-----LRRLER--A-HSEGVTSLVFSRDGSQILSTSFDSTARIHG 334 (512)
Q Consensus 266 v~~l~~s~~~~~l~s~-~~dg~i~vwd--~~~~~~-----~~~~~~--~-~~~~i~~~~~~~~~~~l~~~~~dg~v~i~d 334 (512)
-+.++|+.+.+.+... +.+-+|.-|| ..+|.. +..+.. . .....-.++...+|++.++.-..++|...|
T Consensus 160 sNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~d 239 (310)
T KOG4499|consen 160 SNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVD 239 (310)
T ss_pred CccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEEC
Confidence 3678899887766554 4566787787 555542 222221 1 111223445566788888888889999999
Q ss_pred CCCCceeEEeeCCccceeEEEEcC
Q 010362 335 LKSGKLLKEFRGHSSYVNDAIFTN 358 (512)
Q Consensus 335 ~~~~~~~~~~~~~~~~v~~~~~~~ 358 (512)
..+|+.+.+++-....|+|++|-.
T Consensus 240 p~tGK~L~eiklPt~qitsccFgG 263 (310)
T KOG4499|consen 240 PTTGKILLEIKLPTPQITSCCFGG 263 (310)
T ss_pred CCCCcEEEEEEcCCCceEEEEecC
Confidence 999999999998888999999964
No 414
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=96.74 E-value=0.56 Score=44.76 Aligned_cols=42 Identities=12% Similarity=0.043 Sum_probs=34.8
Q ss_pred ccceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeecCCC
Q 010362 348 SSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPP 389 (512)
Q Consensus 348 ~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 389 (512)
...+.+++.+|++++.++.+.=|.|.++|+.++..++.++.-
T Consensus 307 ~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGY 348 (415)
T PF14655_consen 307 KREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGY 348 (415)
T ss_pred CceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccC
Confidence 345788999999998888888899999999998877766643
No 415
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=96.74 E-value=0.0057 Score=51.37 Aligned_cols=105 Identities=21% Similarity=0.236 Sum_probs=66.4
Q ss_pred CCeEEEEeCCCeEEEEEccCCeeeEEeccccccCeEE-EEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeeCCc-ccee
Q 010362 275 SEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTS-LVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRGHS-SYVN 352 (512)
Q Consensus 275 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~i~~-~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~-~~v~ 352 (512)
+..++.|+.+|.|.+|+..--.............|.+ +.-..++.+..+++.||.|+.|++.-.+.+.....|+ .++.
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e 149 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGE 149 (238)
T ss_pred CceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCcc
Confidence 4568899999999999876211111111112222322 2233356688899999999999998888877777676 4555
Q ss_pred EEEEcCCCCEEEEE--eCCCcEEEEeCCC
Q 010362 353 DAIFTNDGSRVVTA--SSDCTVKVWDLKS 379 (512)
Q Consensus 353 ~~~~~~~~~~l~~~--~~dg~i~iwd~~~ 379 (512)
....+..+..+..+ +.|..++.|++..
T Consensus 150 ~~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 150 ELIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred eeEEecCCceEEeeccccchhhhhcchhh
Confidence 55555555555555 5666666666653
No 416
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=96.74 E-value=0.57 Score=44.78 Aligned_cols=198 Identities=16% Similarity=0.204 Sum_probs=110.2
Q ss_pred CCCeEEEEeCCCeEEEEEccCCeeeEEecccc-ccCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeeCCc-cce
Q 010362 274 DSEMLASGSQDGKIKVWRIRSGQCLRRLERAH-SEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRGHS-SYV 351 (512)
Q Consensus 274 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~-~~v 351 (512)
++ .+..+..+|.|.-.|..++..+....... ...+..-.+..+|+ ++.++.+|.++.+|.++|+.+....... ..+
T Consensus 68 dg-~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~ 145 (370)
T COG1520 68 DG-TVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK-IYVGSWDGKLYALDASTGTLVWSRNVGGSPYY 145 (370)
T ss_pred CC-eEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCe-EEEecccceEEEEECCCCcEEEEEecCCCeEE
Confidence 44 45555778889999999888665443221 12233333333565 8888889999999998999988887655 112
Q ss_pred eEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeecCCCC--CCCCCCceeEEEEEcCCCCCeEEEEcC--CCcEEEEecC
Q 010362 352 NDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPP--PLRGGDASVNSVHLFPKNPDHIVVCNK--TSSIYIMTLQ 427 (512)
Q Consensus 352 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~--~~~~~~~~i~~~~~~~~~~~~l~~~~~--~~~i~~~~~~ 427 (512)
..-..-.++ .+..++.+|.+...|..+++......... .......+. . ....++.+.. ++.+.-.|..
T Consensus 146 ~~~~v~~~~-~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~------~-~~~~vy~~~~~~~~~~~a~~~~ 217 (370)
T COG1520 146 ASPPVVGDG-TVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPA------I-ASGTVYVGSDGYDGILYALNAE 217 (370)
T ss_pred ecCcEEcCc-EEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCce------e-ecceEEEecCCCcceEEEEEcc
Confidence 222222233 34444478899999988888766654332 111111111 1 1134444444 5566666664
Q ss_pred -CeEEEEeeCCcccC-C------cEEEEEECCCCCEEEEEeCCCeEEEEEcCCCeeEEecccc
Q 010362 428 -GQVVKSFSSGKREG-G------DFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVH 482 (512)
Q Consensus 428 -~~~~~~~~~~~~~~-~------~~~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~h 482 (512)
|............. . .+..-.+.- +.-++.++.+|.+...|..+|+.+-.....
T Consensus 218 ~G~~~w~~~~~~~~~~~~~~~~~~~~~~~v~v-~~~~~~~~~~g~~~~l~~~~G~~~W~~~~~ 279 (370)
T COG1520 218 DGTLKWSQKVSQTIGRTAISTTPAVDGGPVYV-DGGVYAGSYGGKLLCLDADTGELIWSFPAG 279 (370)
T ss_pred CCcEeeeeeeecccCcccccccccccCceEEE-CCcEEEEecCCeEEEEEcCCCceEEEEecc
Confidence 44333321111000 0 011111111 222366777888999999999888776653
No 417
>PHA03098 kelch-like protein; Provisional
Probab=96.69 E-value=0.29 Score=49.52 Aligned_cols=195 Identities=11% Similarity=0.065 Sum_probs=91.9
Q ss_pred CCCCEEEEEeCCC------eEEEEEcCCCeeeccccccccceeeccCcceeEEEEcCCCCeEEEEeCC-----CeEEEEE
Q 010362 223 PDGQFLVSCSFDG------FIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQD-----GKIKVWR 291 (512)
Q Consensus 223 ~~~~~l~sg~~dg------~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d-----g~i~vwd 291 (512)
.++..++.|+.++ .+..||..+.+........ ........+. -++.+.+.||.+ ..+..||
T Consensus 293 ~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~------~~R~~~~~~~--~~~~lyv~GG~~~~~~~~~v~~yd 364 (534)
T PHA03098 293 LNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELI------YPRKNPGVTV--FNNRIYVIGGIYNSISLNTVESWK 364 (534)
T ss_pred ECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCC------cccccceEEE--ECCEEEEEeCCCCCEecceEEEEc
Confidence 3566777776543 5777887776543221111 0111112222 256777778765 3577888
Q ss_pred ccCCeeeEEeccccccCeEEEEEecCCCEEEEEeCC------CcEEEEeCCCCceeEE--eeCCccceeEEEEcCCCCEE
Q 010362 292 IRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFD------STARIHGLKSGKLLKE--FRGHSSYVNDAIFTNDGSRV 363 (512)
Q Consensus 292 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d------g~v~i~d~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l 363 (512)
..+++-...-.......-.+++ .-++...+.|+.+ +.+..||+.+.+-... +....... ++ ...++..+
T Consensus 365 ~~~~~W~~~~~lp~~r~~~~~~-~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~-~~-~~~~~~iy 441 (534)
T PHA03098 365 PGESKWREEPPLIFPRYNPCVV-NVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGG-CA-IYHDGKIY 441 (534)
T ss_pred CCCCceeeCCCcCcCCccceEE-EECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCc-eE-EEECCEEE
Confidence 8776533211111111111222 2356667777632 3578899876543221 11111111 12 22345566
Q ss_pred EEEeCC--------CcEEEEeCCCCceeeecCCCCCCCCCCceeEEEEEcCCCCCeEEEEcCC-----CcEEEEecCCeE
Q 010362 364 VTASSD--------CTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKT-----SSIYIMTLQGQV 430 (512)
Q Consensus 364 ~~~~~d--------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~-----~~i~~~~~~~~~ 430 (512)
+.|+.+ ..+.+||..+.+-...-..+.+ ... .++... +..+++.|+.+ ..+..||.....
T Consensus 442 v~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~----r~~-~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~ 514 (534)
T PHA03098 442 VIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFP----RIN-ASLCIF--NNKIYVVGGDKYEYYINEIEVYDDKTNT 514 (534)
T ss_pred EECCccCCCCCcccceEEEecCCCCceeeCCCCCcc----ccc-ceEEEE--CCEEEEEcCCcCCcccceeEEEeCCCCE
Confidence 666543 1378889887653322111111 011 111111 33566666543 356777776555
Q ss_pred EEEee
Q 010362 431 VKSFS 435 (512)
Q Consensus 431 ~~~~~ 435 (512)
.....
T Consensus 515 W~~~~ 519 (534)
T PHA03098 515 WTLFC 519 (534)
T ss_pred EEecC
Confidence 44443
No 418
>PHA03098 kelch-like protein; Provisional
Probab=96.65 E-value=0.22 Score=50.36 Aligned_cols=190 Identities=8% Similarity=0.004 Sum_probs=91.7
Q ss_pred CCCCeEEEEeCCC------eEEEEEccCCeeeEEeccccccCeEEEEEecCCCEEEEEeCC-----CcEEEEeCCCCcee
Q 010362 273 RDSEMLASGSQDG------KIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFD-----STARIHGLKSGKLL 341 (512)
Q Consensus 273 ~~~~~l~s~~~dg------~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----g~v~i~d~~~~~~~ 341 (512)
.++..++.|+.++ .+..||..+++....-.......-.+++ .-++..++.|+.+ ..+..||..+.+-.
T Consensus 293 ~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~-~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~ 371 (534)
T PHA03098 293 LNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVT-VFNNRIYVIGGIYNSISLNTVESWKPGESKWR 371 (534)
T ss_pred ECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEE-EECCEEEEEeCCCCCEecceEEEEcCCCCcee
Confidence 3456677776542 5778888777643221111111111222 2357777788765 35777887765432
Q ss_pred EE--eeCCccceeEEEEcCCCCEEEEEeCC------CcEEEEeCCCCceeeecCCCCCCCCCCceeEEEEEcCCCCCeEE
Q 010362 342 KE--FRGHSSYVNDAIFTNDGSRVVTASSD------CTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIV 413 (512)
Q Consensus 342 ~~--~~~~~~~v~~~~~~~~~~~l~~~~~d------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~ 413 (512)
.. +....... +++ .-+++..+.||.+ ..+..||..+.+-...-..+....++ ++... +..+++
T Consensus 372 ~~~~lp~~r~~~-~~~-~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~-----~~~~~--~~~iyv 442 (534)
T PHA03098 372 EEPPLIFPRYNP-CVV-NVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGG-----CAIYH--DGKIYV 442 (534)
T ss_pred eCCCcCcCCccc-eEE-EECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCc-----eEEEE--CCEEEE
Confidence 21 11111111 112 2355666666632 35788998775432221111111111 11211 225566
Q ss_pred EEcCC--------CcEEEEecCCeEEEEeeCCcccCCcEEEEEECCCCCEEEEEeCC-----CeEEEEEcCCCe
Q 010362 414 VCNKT--------SSIYIMTLQGQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGED-----RNLYCFSHQSGK 474 (512)
Q Consensus 414 ~~~~~--------~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d-----g~i~iwd~~~~~ 474 (512)
.|+.+ ..+..||.....................+. .+++.++.|+.+ +.+.+||..+.+
T Consensus 443 ~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~v~~yd~~~~~ 514 (534)
T PHA03098 443 IGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCI--FNNKIYVVGGDKYEYYINEIEVYDDKTNT 514 (534)
T ss_pred ECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEE--ECCEEEEEcCCcCCcccceeEEEeCCCCE
Confidence 66532 237888887655444432221111111222 267777777754 468888887664
No 419
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.65 E-value=0.029 Score=58.01 Aligned_cols=149 Identities=16% Similarity=0.095 Sum_probs=97.7
Q ss_pred cceeEEEEcCCCCEEEEE--eCCCcEEEEeCCCCceeeec-----CCCCCCCCCCceeEEEEEcCCCCCeEEEEcCCCcE
Q 010362 349 SYVNDAIFTNDGSRVVTA--SSDCTVKVWDLKSTDCLQTF-----KPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSI 421 (512)
Q Consensus 349 ~~v~~~~~~~~~~~l~~~--~~dg~i~iwd~~~~~~~~~~-----~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i 421 (512)
.++..+...+|+...++. +.+-.|..||+++....... ...........-..++.|.|.-+...+++..|+.|
T Consensus 101 ~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl 180 (1405)
T KOG3630|consen 101 IPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSL 180 (1405)
T ss_pred ccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccch
Confidence 356667777776654443 33447899999865332211 11111112234456788999888889999999999
Q ss_pred EEEecCCe--EEEEeeCCcccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCeeEEecccc----CCCeEEEEEcCCC
Q 010362 422 YIMTLQGQ--VVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVH----EKDVIGVTHHPHR 495 (512)
Q Consensus 422 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~h----~~~v~~v~~~p~~ 495 (512)
.+..+... .+..+ ......++++|+|.|+.++.|-.+|++.-|... ++....+... ...|.+|+|-...
T Consensus 181 ~V~~~~~~~~~v~s~----p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~-leik~~ip~Pp~~e~yrvl~v~Wl~t~ 255 (1405)
T KOG3630|consen 181 RVKSTKQLAQNVTSF----PVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS-LEIKSEIPEPPVEENYRVLSVTWLSTQ 255 (1405)
T ss_pred hhhhhhhhhhhhccc----CcccceeeEEeccccceeeEecCCCeEEEeecc-cceeecccCCCcCCCcceeEEEEecce
Confidence 88877622 22221 124457899999999999999999999888743 3433333322 3579999998877
Q ss_pred CeEEEEE
Q 010362 496 NLLATYG 502 (512)
Q Consensus 496 ~~l~s~~ 502 (512)
.++++-+
T Consensus 256 eflvvy~ 262 (1405)
T KOG3630|consen 256 EFLVVYG 262 (1405)
T ss_pred eEEEEec
Confidence 7776544
No 420
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=96.63 E-value=0.47 Score=42.41 Aligned_cols=166 Identities=16% Similarity=0.103 Sum_probs=94.9
Q ss_pred ceeEEEEcCCCCeEEEEe-CCCeEEEEEccCCeeeEEeccccccCeEEEEEecCCCEEEEEeCCCcEEEEe-CCCCcee-
Q 010362 265 TVLCIEFSRDSEMLASGS-QDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHG-LKSGKLL- 341 (512)
Q Consensus 265 ~v~~l~~s~~~~~l~s~~-~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~i~d-~~~~~~~- 341 (512)
.+...+++++++.+|... .++.-.+|-...+....... ....+..-.|++++...++...+....++. ..++...
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~--~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~ 102 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVL--TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEP 102 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeec--cCCccccccccCCCCEEEEEcCCCceEEEEecCCCccee
Confidence 688999999999887765 23333334334443333332 234788889999987777766666666663 3333222
Q ss_pred EEeeC--CccceeEEEEcCCCCEEEEEe---CCCcEEEEeCCCCce--eeecCCCC-CCCCCCceeEEEEEcCCCCCeEE
Q 010362 342 KEFRG--HSSYVNDAIFTNDGSRVVTAS---SDCTVKVWDLKSTDC--LQTFKPPP-PLRGGDASVNSVHLFPKNPDHIV 413 (512)
Q Consensus 342 ~~~~~--~~~~v~~~~~~~~~~~l~~~~---~dg~i~iwd~~~~~~--~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~l~ 413 (512)
..... -...|+.+.++|||..++... .++.|.+--+..... ...+..+. ........+.++.|.++. .+++
T Consensus 103 ~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~-~L~V 181 (253)
T PF10647_consen 103 VEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDS-TLVV 181 (253)
T ss_pred EEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCC-EEEE
Confidence 12221 122799999999999887665 346676664432111 11111111 111335688999999988 4554
Q ss_pred EEcC-CCcEEE-EecCCeEEEE
Q 010362 414 VCNK-TSSIYI-MTLQGQVVKS 433 (512)
Q Consensus 414 ~~~~-~~~i~~-~~~~~~~~~~ 433 (512)
.+.. ++.+.. ....+.....
T Consensus 182 ~~~~~~~~~~~~v~~dG~~~~~ 203 (253)
T PF10647_consen 182 LGRSAGGPVVRLVSVDGGPSTP 203 (253)
T ss_pred EeCCCCCceeEEEEccCCcccc
Confidence 4444 443444 4444444333
No 421
>PRK10115 protease 2; Provisional
Probab=96.59 E-value=1.2 Score=46.42 Aligned_cols=112 Identities=13% Similarity=0.081 Sum_probs=69.9
Q ss_pred cceeEEEEcCCCCeEEEEeCC-----CeEEEEEccCCeeeEEeccccccCeEEEEEecCCCEEEEEeCC------CcEEE
Q 010362 264 ETVLCIEFSRDSEMLASGSQD-----GKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFD------STARI 332 (512)
Q Consensus 264 ~~v~~l~~s~~~~~l~s~~~d-----g~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d------g~v~i 332 (512)
-.+..+.|+|||++|+.+... ..|++.|+.+|..+.... ...-..++|.+|++.|+....+ ..|+.
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i---~~~~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~ 203 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELL---DNVEPSFVWANDSWTFYYVRKHPVTLLPYQVWR 203 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccc---cCcceEEEEeeCCCEEEEEEecCCCCCCCEEEE
Confidence 457788999999988876432 368899998886433222 1111569999999877766543 36788
Q ss_pred EeCCCC--ceeEEeeCCcccee-EEEEcCCCCEEEEEeC---CCcEEEEeCC
Q 010362 333 HGLKSG--KLLKEFRGHSSYVN-DAIFTNDGSRVVTASS---DCTVKVWDLK 378 (512)
Q Consensus 333 ~d~~~~--~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~---dg~i~iwd~~ 378 (512)
+++.++ +-...+........ ....+.++++++..+. ++.+.+++..
T Consensus 204 h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~ 255 (686)
T PRK10115 204 HTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAE 255 (686)
T ss_pred EECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECc
Confidence 888877 33333443223222 3333447777665443 4568888853
No 422
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=96.51 E-value=0.57 Score=41.89 Aligned_cols=150 Identities=15% Similarity=0.137 Sum_probs=88.9
Q ss_pred CeEEEEEecCCCEEEEEe--C-CCcEEEEeCCCCceeEEeeCCccceeEEEEcCCCCEEEEEeCCCcEEEEe-CCCCcee
Q 010362 308 GVTSLVFSRDGSQILSTS--F-DSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWD-LKSTDCL 383 (512)
Q Consensus 308 ~i~~~~~~~~~~~l~~~~--~-dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd-~~~~~~~ 383 (512)
.+.+.+++++++.++... . ...++++.. +....... ....+....|++++...+....+...+++. ..++...
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~--~~~~~~~~-~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~ 101 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPA--GGPVRPVL-TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGE 101 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcC--CCcceeec-cCCccccccccCCCCEEEEEcCCCceEEEEecCCCcce
Confidence 688999999999887766 2 234555543 33333321 223678889999977666666566666663 3333222
Q ss_pred e-ecCCCCCCCCCCceeEEEEEcCCCCCeEEEEc--CCCcEEEEecC----C---eEEEEeeCCcccCCcEEEEEECCCC
Q 010362 384 Q-TFKPPPPLRGGDASVNSVHLFPKNPDHIVVCN--KTSSIYIMTLQ----G---QVVKSFSSGKREGGDFVAACVSPKG 453 (512)
Q Consensus 384 ~-~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~--~~~~i~~~~~~----~---~~~~~~~~~~~~~~~~~~~~~s~~g 453 (512)
. ..... .....|.++.++|++....++.. .++.+++--+. + ...............+..+.|.+++
T Consensus 102 ~~~v~~~----~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~ 177 (253)
T PF10647_consen 102 PVEVDWP----GLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDS 177 (253)
T ss_pred eEEeccc----ccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCC
Confidence 1 11111 11128999999999966666553 34667666543 2 0111111111224568899999999
Q ss_pred CEEEEEeCCCe
Q 010362 454 EWIYCVGEDRN 464 (512)
Q Consensus 454 ~~l~~g~~dg~ 464 (512)
.+++.+...+.
T Consensus 178 ~L~V~~~~~~~ 188 (253)
T PF10647_consen 178 TLVVLGRSAGG 188 (253)
T ss_pred EEEEEeCCCCC
Confidence 98887775443
No 423
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.50 E-value=0.023 Score=58.77 Aligned_cols=157 Identities=13% Similarity=-0.047 Sum_probs=100.3
Q ss_pred EEEecCcCceEEEEECCCCCEEEEEe--CCCeEEEEEcCCCeeeccc---cccccceeeccCcceeEEEEcCCC-CeEEE
Q 010362 207 TIKFGTKSHAECARFSPDGQFLVSCS--FDGFIEVWDYLSGKLKKDL---QYQADETFMMHDETVLCIEFSRDS-EMLAS 280 (512)
Q Consensus 207 ~~~~~h~~~v~~~~~s~~~~~l~sg~--~dg~i~iwd~~~~~~~~~~---~~~~~~~~~~h~~~v~~l~~s~~~-~~l~s 280 (512)
+++....-.+..+...+|+...++.. .+-.|..||+.+-...... ......+......-..++.|+|.- ...+.
T Consensus 94 t~~v~k~~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av 173 (1405)
T KOG3630|consen 94 TFKVEKEIPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAV 173 (1405)
T ss_pred ceeeeccccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhh
Confidence 34444555666777778877655543 3337888998654332211 111111222233456789999853 24566
Q ss_pred EeCCCeEEEEEccCCeeeEEeccccccCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeeC----CccceeEEEE
Q 010362 281 GSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRG----HSSYVNDAIF 356 (512)
Q Consensus 281 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~----~~~~v~~~~~ 356 (512)
+..|+.|++..+........- .......++++|+|.|+.++.|-..|++.-|.. +.+....+.+ ....|.+++|
T Consensus 174 ~l~dlsl~V~~~~~~~~~v~s-~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P-~leik~~ip~Pp~~e~yrvl~v~W 251 (1405)
T KOG3630|consen 174 DLSDLSLRVKSTKQLAQNVTS-FPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEP-SLEIKSEIPEPPVEENYRVLSVTW 251 (1405)
T ss_pred hccccchhhhhhhhhhhhhcc-cCcccceeeEEeccccceeeEecCCCeEEEeec-ccceeecccCCCcCCCcceeEEEE
Confidence 778999998876543322221 145678999999999999999999999998875 4554444433 2467999999
Q ss_pred cCCCCEEEE
Q 010362 357 TNDGSRVVT 365 (512)
Q Consensus 357 ~~~~~~l~~ 365 (512)
-....++++
T Consensus 252 l~t~eflvv 260 (1405)
T KOG3630|consen 252 LSTQEFLVV 260 (1405)
T ss_pred ecceeEEEE
Confidence 877666654
No 424
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=96.49 E-value=0.75 Score=43.06 Aligned_cols=240 Identities=12% Similarity=0.075 Sum_probs=116.0
Q ss_pred ceeEEEEcCCCCeEEEEeCCCeEEEEEccCCee---eEEe---ccccccCeEEEEEecC---CCEEEEEeC-C-------
Q 010362 265 TVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQC---LRRL---ERAHSEGVTSLVFSRD---GSQILSTSF-D------- 327 (512)
Q Consensus 265 ~v~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~---~~~~---~~~~~~~i~~~~~~~~---~~~l~~~~~-d------- 327 (512)
..+.|+|.|||+++++ ...|.|++++ ..+.. +..+ ..........++++|+ ..+|++... .
T Consensus 3 ~P~~~a~~pdG~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~ 80 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVA-ERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDN 80 (331)
T ss_dssp SEEEEEEETTSCEEEE-ETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSE
T ss_pred CceEEEEeCCCcEEEE-eCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCc
Confidence 4678999999877665 5699999999 44543 2222 1234567899999994 334443332 1
Q ss_pred -CcEEEEeCCCC-------ce-eEEeeC---CccceeEEEEcCCCCEEEEEeCCCc-------------EEEEeCCCCce
Q 010362 328 -STARIHGLKSG-------KL-LKEFRG---HSSYVNDAIFTNDGSRVVTASSDCT-------------VKVWDLKSTDC 382 (512)
Q Consensus 328 -g~v~i~d~~~~-------~~-~~~~~~---~~~~v~~~~~~~~~~~l~~~~~dg~-------------i~iwd~~~~~~ 382 (512)
..|.-|....+ +. +..+.. .......|.|.|||.+.++.+..+. |.-.+.. +..
T Consensus 81 ~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~d-G~~ 159 (331)
T PF07995_consen 81 DNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGNDDNAQDPNSLRGKILRIDPD-GSI 159 (331)
T ss_dssp EEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTTGGGGCSTTSSTTEEEEEETT-SSB
T ss_pred ceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCCcccccccccccceEEEeccc-CcC
Confidence 23444444332 11 112222 2233566999999977777664332 2222221 110
Q ss_pred eeecCCC-------CCCCCCCceeEEEEEcCCCCCeEEEEc-CCCcEEEEecC-CeEE----------------------
Q 010362 383 LQTFKPP-------PPLRGGDASVNSVHLFPKNPDHIVVCN-KTSSIYIMTLQ-GQVV---------------------- 431 (512)
Q Consensus 383 ~~~~~~~-------~~~~~~~~~i~~~~~~~~~~~~l~~~~-~~~~i~~~~~~-~~~~---------------------- 431 (512)
...-+.. ......-.....++|.|....++++-. .+..-.+.-+. +...
T Consensus 160 p~dnP~~~~~~~~~~i~A~GlRN~~~~~~d~~tg~l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~~~~~~~~~~~~~~ 239 (331)
T PF07995_consen 160 PADNPFVGDDGADSEIYAYGLRNPFGLAFDPNTGRLWAADNGPDGWDEINRIEPGGNYGWPYCEGGPKYSGPPIGDAPSC 239 (331)
T ss_dssp -TTSTTTTSTTSTTTEEEE--SEEEEEEEETTTTEEEEEEE-SSSSEEEEEE-TT-B--TTTBSSSCSTTSS-ECTGSS-
T ss_pred CCCCccccCCCceEEEEEeCCCccccEEEECCCCcEEEEccCCCCCcEEEEeccCCcCCCCCCcCCCCCCCCccccccCC
Confidence 0000000 000001123457788887424433322 22211111111 1100
Q ss_pred ----EEeeCCcccCCcEEEEEECC-------CCCEEEEEeCCCeEEEEEcCCCeeEE----eccccCCCeEEEEEcCCCC
Q 010362 432 ----KSFSSGKREGGDFVAACVSP-------KGEWIYCVGEDRNLYCFSHQSGKLEH----LMKVHEKDVIGVTHHPHRN 496 (512)
Q Consensus 432 ----~~~~~~~~~~~~~~~~~~s~-------~g~~l~~g~~dg~i~iwd~~~~~~~~----~~~~h~~~v~~v~~~p~~~ 496 (512)
...... .....+..+.|.. .|.++++.-..+.|....+..+..+. .+......+..|++.|||.
T Consensus 240 ~~~~~P~~~~-~~~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~ 318 (331)
T PF07995_consen 240 PGFVPPVFAY-PPHSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGA 318 (331)
T ss_dssp TTS---SEEE-TTT--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSE
T ss_pred CCcCccceee-cCccccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCe
Confidence 000000 0112344555532 45566666667788888887543221 2233445899999999999
Q ss_pred eEEEEECCCeEE
Q 010362 497 LLATYGEDCTMK 508 (512)
Q Consensus 497 ~l~s~~~dg~i~ 508 (512)
++++-+.+|.|.
T Consensus 319 Lyv~~d~~G~iy 330 (331)
T PF07995_consen 319 LYVSDDSDGKIY 330 (331)
T ss_dssp EEEEE-TTTTEE
T ss_pred EEEEECCCCeEe
Confidence 999888888774
No 425
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=96.47 E-value=0.53 Score=41.16 Aligned_cols=238 Identities=10% Similarity=0.043 Sum_probs=133.0
Q ss_pred cceeEEEEcCCCCeEEEEeCCCeEEEEEccCCeeeEEeccccccCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeE-
Q 010362 264 ETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLK- 342 (512)
Q Consensus 264 ~~v~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~- 342 (512)
..-..++-.|||..-.++...|.|--.|..+|+....- .+.......+...|||..-++-+.. .|.-.|-++.+...
T Consensus 62 ~ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~yp-Lg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~evt~f 139 (353)
T COG4257 62 SAPFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYP-LGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEVTRF 139 (353)
T ss_pred CCccccccCCCCceEEecCccccceecCCCCCceEEEe-cCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccceEEe
Confidence 34456778889988888888888888899999865443 3666677788888998876665443 45556665554322
Q ss_pred Ee--eCCccceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeecCCCCCCCCCCceeEEEEEcCCCCCeEEEEcCCCc
Q 010362 343 EF--RGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSS 420 (512)
Q Consensus 343 ~~--~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~ 420 (512)
.+ +.-........|.+.|++-+++... .---.|..+ ..+..+..+ .....+.++..|++ .+.++.-.+..
T Consensus 140 ~lp~~~a~~nlet~vfD~~G~lWFt~q~G-~yGrLdPa~-~~i~vfpaP-----qG~gpyGi~atpdG-svwyaslagna 211 (353)
T COG4257 140 PLPLEHADANLETAVFDPWGNLWFTGQIG-AYGRLDPAR-NVISVFPAP-----QGGGPYGICATPDG-SVWYASLAGNA 211 (353)
T ss_pred ecccccCCCcccceeeCCCccEEEeeccc-cceecCccc-CceeeeccC-----CCCCCcceEECCCC-cEEEEeccccc
Confidence 11 2224467888999999988887531 111111111 112222222 12345667777777 55555555555
Q ss_pred EEEEecCCeEEEEeeCCcccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCeeE-EeccccCCCeEEEEEcCCCCeEE
Q 010362 421 IYIMTLQGQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLE-HLMKVHEKDVIGVTHHPHRNLLA 499 (512)
Q Consensus 421 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~-~~~~~h~~~v~~v~~~p~~~~l~ 499 (512)
|-..|........+............+-.+|.|+.-++-...+.++.||..+..-+ ..+.+....-.++.....++...
T Consensus 212 iaridp~~~~aev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~sW~eypLPgs~arpys~rVD~~grVW~ 291 (353)
T COG4257 212 IARIDPFAGHAEVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTSWIEYPLPGSKARPYSMRVDRHGRVWL 291 (353)
T ss_pred eEEcccccCCcceecCCCcccccccccccCccCcEEEeccCCceeeEeCcccccceeeeCCCCCCCcceeeeccCCcEEe
Confidence 55555442222222222221223445666788888888778888888887654421 22333333334444444444444
Q ss_pred EEECCCeEEEec
Q 010362 500 TYGEDCTMKLWK 511 (512)
Q Consensus 500 s~~~dg~i~iW~ 511 (512)
+--.-|.|.-+|
T Consensus 292 sea~agai~rfd 303 (353)
T COG4257 292 SEADAGAIGRFD 303 (353)
T ss_pred eccccCceeecC
Confidence 333334443333
No 426
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.37 E-value=0.033 Score=50.87 Aligned_cols=102 Identities=13% Similarity=0.079 Sum_probs=78.8
Q ss_pred cccchhhH-HHHHHHHHHhcChHHHHHHHHhhcCccccc------cccHHHHHhhhccCCchhhhhhhccc-----cCCh
Q 010362 3 LEIEARDV-IKIVLQFCKENSLQQTFQTLQNECQVSLNT------VDSIETFVADINSGRWDAILPQVAQL-----KLPR 70 (512)
Q Consensus 3 ~~~~~~e~-~~li~q~L~e~G~~~t~~~l~~Es~~~~~~------~~~~~~~~~~i~~g~w~~~~~~l~~~-----~~~~ 70 (512)
+..+++++ +.+|..++...|..+.+..|-+|+|...+. ...+.+..+++.+|+-..+++.+... ....
T Consensus 111 v~~~~~~~ln~ai~~h~~rqGm~dv~~~l~~Ea~~~~~~~~~~~~F~el~~Iv~~lke~Dl~~aLeWa~~~~~~L~~~~s 190 (394)
T KOG2817|consen 111 VDFDTSQVLNEAIVYHFYRQGMDDVGECLIKEAGLSEDESKSRTEFVELNQIVEALKERDLEPALEWAESNRQKLKEKSS 190 (394)
T ss_pred cChhHHHHHHHHHHHHHHHcCchHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHHhccchhHHHHHHHhhhhhccccc
Confidence 33455555 999999999999999999999999997641 22345677788899988888865542 1223
Q ss_pred hHHHHHHHHHHHHHHHcCChH--HHHHHHHhcchhh
Q 010362 71 NKLEDLYEQIVLEMIELRELD--TARAILRQTQAMG 104 (512)
Q Consensus 71 ~~~~~l~~~~~~e~l~~~~~~--~a~~~lr~~~~~~ 104 (512)
.+-+.+..+.|++++..+... +|+.-.|+...+.
T Consensus 191 ~LE~~Lh~l~fl~l~~~g~~~~~eAl~Yar~~~~~F 226 (394)
T KOG2817|consen 191 SLEFKLHSLHFLSLIRGGKSDQREALRYARTHFAPF 226 (394)
T ss_pred cHHHHHHHHHHHHHHhcCCcCcHHHHHHHHHhcCcc
Confidence 456779999999999999887 9999999777664
No 427
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=96.33 E-value=0.73 Score=41.16 Aligned_cols=226 Identities=14% Similarity=0.134 Sum_probs=130.9
Q ss_pred ceeEEEEcCCCCeEEEEeCCCeEEEEEcc------CC-eeeEEecc----ccccCeEEEEEecCCC------------EE
Q 010362 265 TVLCIEFSRDSEMLASGSQDGKIKVWRIR------SG-QCLRRLER----AHSEGVTSLVFSRDGS------------QI 321 (512)
Q Consensus 265 ~v~~l~~s~~~~~l~s~~~dg~i~vwd~~------~~-~~~~~~~~----~~~~~i~~~~~~~~~~------------~l 321 (512)
.-+.|+++|.+.+-++....+...+||.. .. ..+..+.. ......+.+.|+.... .+
T Consensus 24 N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~F 103 (336)
T TIGR03118 24 NAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRF 103 (336)
T ss_pred ccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeE
Confidence 35789999999877777778899999986 12 22333321 1234677888874322 36
Q ss_pred EEEeCCCcEEEEeCCCCce-----eEEeeC-Cccc-eeEEEEc--CCCCEEEEE-eCCCcEEEEeCCCCcee--eecCCC
Q 010362 322 LSTSFDSTARIHGLKSGKL-----LKEFRG-HSSY-VNDAIFT--NDGSRVVTA-SSDCTVKVWDLKSTDCL--QTFKPP 389 (512)
Q Consensus 322 ~~~~~dg~v~i~d~~~~~~-----~~~~~~-~~~~-v~~~~~~--~~~~~l~~~-~~dg~i~iwd~~~~~~~--~~~~~~ 389 (512)
+.+++||+|.-|...-+.. ...+.. ..+. -..+++. ..+.+|..+ -..++|.+||-.-.... ..+..+
T Consensus 104 if~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~DP 183 (336)
T TIGR03118 104 LFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFIDP 183 (336)
T ss_pred EEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccCC
Confidence 7788999999998532221 122221 1122 2344444 335566554 45789999986543221 111111
Q ss_pred CCCCCCCce-----------eEEEEEcCCCCCeEEEEcCCCcEEEEecCCeEEEEeeCCcccCCcEEEEEECC------C
Q 010362 390 PPLRGGDAS-----------VNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQVVKSFSSGKREGGDFVAACVSP------K 452 (512)
Q Consensus 390 ~~~~~~~~~-----------i~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~------~ 452 (512)
.+...-.+ |+-..-.+.. ..=+.+..-|.|-++|..+..++++.....-+ ....++..| .
T Consensus 184 -~iPagyAPFnIqnig~~lyVtYA~qd~~~-~d~v~G~G~G~VdvFd~~G~l~~r~as~g~LN-aPWG~a~APa~FG~~s 260 (336)
T TIGR03118 184 -ALPAGYAPFNVQNLGGTLYVTYAQQDADR-NDEVAGAGLGYVNVFTLNGQLLRRVASSGRLN-APWGLAIAPESFGSLS 260 (336)
T ss_pred -CCCCCCCCcceEEECCeEEEEEEecCCcc-cccccCCCcceEEEEcCCCcEEEEeccCCccc-CCceeeeChhhhCCCC
Confidence 01111111 1111111111 22233445578999999999999886554322 334555544 4
Q ss_pred CCEEEEEeCCCeEEEEEcCCCeeEEeccccCC------CeEEEEEcC
Q 010362 453 GEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEK------DVIGVTHHP 493 (512)
Q Consensus 453 g~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~------~v~~v~~~p 493 (512)
|.+|+---.||+|..||..+++.+..+....+ .++.++|..
T Consensus 261 g~lLVGNFGDG~InaFD~~sG~~~g~L~~~~G~pi~i~GLWgL~fGn 307 (336)
T TIGR03118 261 GALLVGNFGDGTINAYDPQSGAQLGQLLDPDNHPVKVDGLWSLTFGN 307 (336)
T ss_pred CCeEEeecCCceeEEecCCCCceeeeecCCCCCeEEecCeEEeeeCC
Confidence 66666555899999999999998877765433 466888875
No 428
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=96.31 E-value=0.71 Score=40.85 Aligned_cols=277 Identities=8% Similarity=0.068 Sum_probs=140.7
Q ss_pred cCcCceEEEEECCCCCEEEEEeCCCeEEEEEcCCCeeeccccccccceeeccCcceeEEEEcCCCCeEEEEeCCCeEEEE
Q 010362 211 GTKSHAECARFSPDGQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQDGKIKVW 290 (512)
Q Consensus 211 ~h~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~vw 290 (512)
.-.+-+..+.++.+ +...+..+.-++|.|+.+......+..-. ..+--.++.. .|++..++..|.-+.+.
T Consensus 84 ~~~~l~~Dv~vse~--yvyvad~ssGL~IvDIS~P~sP~~~~~ln------t~gyaygv~v--sGn~aYVadlddgfLiv 153 (370)
T COG5276 84 NARDLFADVRVSEE--YVYVADWSSGLRIVDISTPDSPTLIGFLN------TDGYAYGVYV--SGNYAYVADLDDGFLIV 153 (370)
T ss_pred ehhhhhheeEeccc--EEEEEcCCCceEEEeccCCCCcceecccc------CCceEEEEEe--cCCEEEEeeccCcEEEE
Confidence 34455666777654 56666677779999998765443322110 1133344444 47888888867678888
Q ss_pred EccCCe---eeEEeccccccCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCcee---EEeeCCccceeEEEEcCCCCEEE
Q 010362 291 RIRSGQ---CLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLL---KEFRGHSSYVNDAIFTNDGSRVV 364 (512)
Q Consensus 291 d~~~~~---~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~---~~~~~~~~~v~~~~~~~~~~~l~ 364 (512)
|+.+.+ ...+.. .....-..++.+ |++-..+..|+-+.+.|+...... .... ....+.++..+++..+++
T Consensus 154 dvsdpssP~lagrya-~~~~d~~~v~IS--Gn~AYvA~~d~GL~ivDVSnp~sPvli~~~n-~g~g~~sv~vsdnr~y~v 229 (370)
T COG5276 154 DVSDPSSPQLAGRYA-LPGGDTHDVAIS--GNYAYVAWRDGGLTIVDVSNPHSPVLIGSYN-TGPGTYSVSVSDNRAYLV 229 (370)
T ss_pred ECCCCCCceeeeeec-cCCCCceeEEEe--cCeEEEEEeCCCeEEEEccCCCCCeEEEEEe-cCCceEEEEecCCeeEEE
Confidence 887643 333333 223334566665 778888889999999999655332 2222 222577777776654444
Q ss_pred EEeCCCcEEEEeCCCCceeeecCCCCCCCCCCceeEEEEEcCCCCCeEEEEcCCCcEEEEecCCeEEEEeeCCcccCC-c
Q 010362 365 TASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQVVKSFSSGKREGG-D 443 (512)
Q Consensus 365 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~ 443 (512)
..+ --+.+-|..+.+....+..-. ...+.++.-.|-..++..+...+.-+.+.|+.+..-..+.......+ .
T Consensus 230 vy~--egvlivd~s~~ssp~~~gsye-----t~~p~~~s~v~Vs~~~~Yvadga~gl~~idisnp~spfl~ss~~t~g~~ 302 (370)
T COG5276 230 VYD--EGVLIVDVSGPSSPTVFGSYE-----TSNPVSISTVPVSGEYAYVADGAKGLPIIDISNPPSPFLSSSLDTAGYQ 302 (370)
T ss_pred Ecc--cceEEEecCCCCCceEeeccc-----cCCcccccceecccceeeeeccccCceeEeccCCCCCchhccccCCCcc
Confidence 433 336777776654333222111 11122221112222555666666666666665332222211111000 1
Q ss_pred EEEEEECCCCCEEEEEeCCCeEEEEEcCCCeeEEeccccCCCeEEEEEcCCCCeEEEEECCCeEEEec
Q 010362 444 FVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPHRNLLATYGEDCTMKLWK 511 (512)
Q Consensus 444 ~~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~~~dg~i~iW~ 511 (512)
-..+ ...|.++..+..+ ...+-+....+......+...-+.+.+.+-+.+.+.+...++-+.||+
T Consensus 303 a~gi--~ay~~y~yiadkn-~g~vV~~s~~s~m~~~~g~~ti~~s~~v~~~~q~~y~~d~~~gl~i~~ 367 (370)
T COG5276 303 AAGI--RAYGNYNYIADKN-TGAVVDASPPSMMDKRPGRPTIGQSCDVSVDTQIIYSTDYNGGLSIIE 367 (370)
T ss_pred ccce--EEecCeeEeccCC-ceEEEeCCChhhcccccCcceEeeecceEEEeeEEEEeecCCCEEEEE
Confidence 1111 1223344444333 333344433322222222212223333333455788888888888886
No 429
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=96.29 E-value=0.53 Score=48.61 Aligned_cols=82 Identities=12% Similarity=0.168 Sum_probs=53.6
Q ss_pred CceEEEEECCCCCEEEEEeCCCeEEEEEcCC----------Cee--e-ccccccccceeeccCcceeEEEEcCC---CCe
Q 010362 214 SHAECARFSPDGQFLVSCSFDGFIEVWDYLS----------GKL--K-KDLQYQADETFMMHDETVLCIEFSRD---SEM 277 (512)
Q Consensus 214 ~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~----------~~~--~-~~~~~~~~~~~~~h~~~v~~l~~s~~---~~~ 277 (512)
-.|..+.+||+|+++|..|..|.+.+ .+-. |+. . +.+..........+...|..+.|+|. +..
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~v~V~-~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~ 163 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRGVVVL-ELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSH 163 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCcEEEE-EeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCe
Confidence 46888999999999999997664443 3321 111 0 01111111111234568999999995 578
Q ss_pred EEEEeCCCeEEEEEccCCe
Q 010362 278 LASGSQDGKIKVWRIRSGQ 296 (512)
Q Consensus 278 l~s~~~dg~i~vwd~~~~~ 296 (512)
|+.-..|+++++||+....
T Consensus 164 l~vLtsdn~lR~y~~~~~~ 182 (717)
T PF10168_consen 164 LVVLTSDNTLRLYDISDPQ 182 (717)
T ss_pred EEEEecCCEEEEEecCCCC
Confidence 8888899999999997543
No 430
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=96.21 E-value=0.85 Score=40.77 Aligned_cols=203 Identities=12% Similarity=0.042 Sum_probs=115.9
Q ss_pred cCeEEEEEecCCCEEEEEeCCCcEEEEeCC------CC-ceeEEeeC-----CccceeEEEEcCCCC------------E
Q 010362 307 EGVTSLVFSRDGSQILSTSFDSTARIHGLK------SG-KLLKEFRG-----HSSYVNDAIFTNDGS------------R 362 (512)
Q Consensus 307 ~~i~~~~~~~~~~~l~~~~~dg~v~i~d~~------~~-~~~~~~~~-----~~~~v~~~~~~~~~~------------~ 362 (512)
.....++++|.+..-++....+...+||.. .. ..+.++.. .....+.+.|+.... .
T Consensus 23 ~N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~ 102 (336)
T TIGR03118 23 RNAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSR 102 (336)
T ss_pred cccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCccccee
Confidence 345789999998888887778899999986 12 22334432 123577778774332 3
Q ss_pred EEEEeCCCcEEEEeCCCCce---eeecCCCCCCCCCCceeEEEEEcCC--CCCeEEEEcCCCcEEEEecCCeEEEE---e
Q 010362 363 VVTASSDCTVKVWDLKSTDC---LQTFKPPPPLRGGDASVNSVHLFPK--NPDHIVVCNKTSSIYIMTLQGQVVKS---F 434 (512)
Q Consensus 363 l~~~~~dg~i~iwd~~~~~~---~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~l~~~~~~~~i~~~~~~~~~~~~---~ 434 (512)
++.+++||+|.-|...-... ...+..... ....-...+++.+. +..+.++--..++|.++|-.-..+.. +
T Consensus 103 Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s--~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F 180 (336)
T TIGR03118 103 FLFVTEDGTLSGWAPALGTTRMTRAEIVVDAS--QQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSF 180 (336)
T ss_pred EEEEeCCceEEeecCcCCcccccccEEEEccC--CCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCc
Confidence 67788999999998543221 011111110 01122334444432 43455666678889999876443221 1
Q ss_pred eCC--cccC-----------CcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCeeEEecc--ccCCCeEEEEEcC------
Q 010362 435 SSG--KREG-----------GDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMK--VHEKDVIGVTHHP------ 493 (512)
Q Consensus 435 ~~~--~~~~-----------~~~~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~~--~h~~~v~~v~~~p------ 493 (512)
... ...- -.|+-..-.++++.=+.|..-|.|-+||. +|++++.+. +.-+..+.|+..|
T Consensus 181 ~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~-~G~l~~r~as~g~LNaPWG~a~APa~FG~~ 259 (336)
T TIGR03118 181 IDPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTL-NGQLLRRVASSGRLNAPWGLAIAPESFGSL 259 (336)
T ss_pred cCCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcC-CCcEEEEeccCCcccCCceeeeChhhhCCC
Confidence 110 0000 01111222344444445556789999996 477777663 2335566788766
Q ss_pred CCCeEEEEECCCeEEEecC
Q 010362 494 HRNLLATYGEDCTMKLWKP 512 (512)
Q Consensus 494 ~~~~l~s~~~dg~i~iW~~ 512 (512)
.+.+|+-==.||+|..+||
T Consensus 260 sg~lLVGNFGDG~InaFD~ 278 (336)
T TIGR03118 260 SGALLVGNFGDGTINAYDP 278 (336)
T ss_pred CCCeEEeecCCceeEEecC
Confidence 3556665557999999986
No 431
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=96.16 E-value=2 Score=44.60 Aligned_cols=231 Identities=10% Similarity=-0.011 Sum_probs=119.5
Q ss_pred CcceeEEEEcCCCCeEEEEeCCCeEEEEEccCCeeeEEeccccccCeEEEEEecC--C----CEEEEEeCCCcEEEEeC-
Q 010362 263 DETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRD--G----SQILSTSFDSTARIHGL- 335 (512)
Q Consensus 263 ~~~v~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~--~----~~l~~~~~dg~v~i~d~- 335 (512)
...+++.+.+.+...++.++.++.+...++..+.............|.|+.++|- + ..+++|.++..+.+.-.
T Consensus 487 p~~~ti~~~~~n~sqVvvA~~~~~l~y~~i~~~~l~e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~ 566 (1096)
T KOG1897|consen 487 PGKITIGVVSANASQVVVAGGGLALFYLEIEDGGLREVSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFL 566 (1096)
T ss_pred CCceEEEEEeecceEEEEecCccEEEEEEeeccceeeeeeheecceeEEEecccCCCCCCcceEEEEEeecceEEEEEEC
Confidence 4556666666666778888878888888877766433333345678999999973 2 26888888776555432
Q ss_pred CCCceeEEe-eCC---ccceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeecCCCCCCCCCCceeEEEEEcCCCCCe
Q 010362 336 KSGKLLKEF-RGH---SSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDH 411 (512)
Q Consensus 336 ~~~~~~~~~-~~~---~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 411 (512)
.+...+... ..- +..|.-..+-.|..+|.++..||.+.-|.+....-...-. ....-...++.=-.|...+ ..
T Consensus 567 pd~~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~fv~d~~tg~lsd~--Kk~~lGt~P~~Lr~f~sk~-~t 643 (1096)
T KOG1897|consen 567 PDLILITHEQLSGEIIPRSILLTTFEGDIHYLLVALGDGALLYFVLDINTGQLSDR--KKVTLGTQPISLRTFSSKS-RT 643 (1096)
T ss_pred CCcceeeeeccCCCccchheeeEEeeccceEEEEEcCCceEEEEEEEcccceEccc--cccccCCCCcEEEEEeeCC-ce
Confidence 222222221 111 2224444555568899999999998777554432221111 1111123344444455555 34
Q ss_pred EEEEcCCCcEEEEecCCeEEEEeeCCcccCCcEEE-EEE-CCC-CCEEEEEeCCCeEEEEEcCCCee--EEeccccCCCe
Q 010362 412 IVVCNKTSSIYIMTLQGQVVKSFSSGKREGGDFVA-ACV-SPK-GEWIYCVGEDRNLYCFSHQSGKL--EHLMKVHEKDV 486 (512)
Q Consensus 412 l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-s~~-g~~l~~g~~dg~i~iwd~~~~~~--~~~~~~h~~~v 486 (512)
-+.+..|.-..+|..+++.+-.-..... +.. +.| ++. +..++.+. .+.+.+.-+..-.. ++++. -....
T Consensus 644 ~vfa~sdrP~viY~~n~kLv~spls~ke----v~~~c~f~s~a~~d~l~~~~-~~~l~i~tid~iqkl~irtvp-l~~~p 717 (1096)
T KOG1897|consen 644 AVFALSDRPTVIYSSNGKLVYSPLSLKE----VNHMCPFNSDAYPDSLASAN-GGALTIGTIDEIQKLHIRTVP-LGESP 717 (1096)
T ss_pred EEEEeCCCCEEEEecCCcEEEeccchHH----hhhhcccccccCCceEEEec-CCceEEEEecchhhcceeeec-CCCCh
Confidence 4444455555566666554433222111 111 112 222 23344333 34555554433221 22232 23445
Q ss_pred EEEEEcCCCCeEEEEE
Q 010362 487 IGVTHHPHRNLLATYG 502 (512)
Q Consensus 487 ~~v~~~p~~~~l~s~~ 502 (512)
..+++.+....+++.+
T Consensus 718 rrI~~q~~sl~~~v~s 733 (1096)
T KOG1897|consen 718 RRICYQESSLTFGVLS 733 (1096)
T ss_pred hheEecccceEEEEEe
Confidence 6677777555555544
No 432
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=96.08 E-value=0.00065 Score=63.13 Aligned_cols=144 Identities=17% Similarity=0.309 Sum_probs=100.5
Q ss_pred EEECCCCCEEEEEeCCCeEEEEEcCCCeeeccccccccceeeccCcceeEEEEcCCCCeEE-EEeCCCeEEEEEccCCee
Q 010362 219 ARFSPDGQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLA-SGSQDGKIKVWRIRSGQC 297 (512)
Q Consensus 219 ~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~-s~~~dg~i~vwd~~~~~~ 297 (512)
..|-|.+.-++.++.+..+..||- .++...... .++....++|..++..++ .+-..+.+.+||+.+...
T Consensus 40 ~~w~~e~~nlavaca~tiv~~YD~-agq~~le~n---------~tg~aldm~wDkegdvlavlAek~~piylwd~n~eyt 109 (615)
T KOG2247|consen 40 HRWRPEGHNLAVACANTIVIYYDK-AGQVILELN---------PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYT 109 (615)
T ss_pred eeEecCCCceehhhhhhHHHhhhh-hcceecccC---------CchhHhhhhhccccchhhhhhhcCCCeeechhhhhhH
Confidence 456677666888888999999984 343333322 345667888888877554 445678999999876432
Q ss_pred eEEeccccccCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeeCCccceeEEEEcCCCCEEEEEeCCCcEEE
Q 010362 298 LRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKV 374 (512)
Q Consensus 298 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 374 (512)
..+..+....-.-+.|++.+..++.+...|.+.+++..+.+.+...-.|...++++++.+.+ +.+.++.|..+.+
T Consensus 110 -qqLE~gg~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd-~vil~dcd~~L~v 184 (615)
T KOG2247|consen 110 -QQLESGGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLED-YVILCDCDNTLSV 184 (615)
T ss_pred -HHHhccCcchHHHHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccc-eeeecCcHHHHHH
Confidence 22222223333337899999999999999999999988776666555588899999999976 4666666655544
No 433
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=96.04 E-value=1.2 Score=40.78 Aligned_cols=236 Identities=14% Similarity=0.164 Sum_probs=107.2
Q ss_pred eEEEEECCCCCEEEEEeCCCeEEEEEcCCCeeeccccccccceeeccCcceeEEEEcCCCCeEEEEeCCCeEEEEEc-cC
Q 010362 216 AECARFSPDGQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWRI-RS 294 (512)
Q Consensus 216 v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~vwd~-~~ 294 (512)
..++.|..+ ..+++| ..| +.+...+.|+.-..+.... . -......+....++..++ ++..|.| |.. +.
T Consensus 64 l~~I~f~~~-~g~ivG-~~g-~ll~T~DgG~tW~~v~l~~--~---lpgs~~~i~~l~~~~~~l-~~~~G~i--y~T~Dg 132 (302)
T PF14870_consen 64 LNSISFDGN-EGWIVG-EPG-LLLHTTDGGKTWERVPLSS--K---LPGSPFGITALGDGSAEL-AGDRGAI--YRTTDG 132 (302)
T ss_dssp EEEEEEETT-EEEEEE-ETT-EEEEESSTTSS-EE----T--T----SS-EEEEEEEETTEEEE-EETT--E--EEESST
T ss_pred EEEEEecCC-ceEEEc-CCc-eEEEecCCCCCcEEeecCC--C---CCCCeeEEEEcCCCcEEE-EcCCCcE--EEeCCC
Confidence 566777643 344444 345 3344444454332222110 0 112223333333443333 3444543 333 33
Q ss_pred CeeeEEeccccccCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeeCCccceeEEEEcCCCCEEEEEeCCCcEEE
Q 010362 295 GQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKV 374 (512)
Q Consensus 295 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 374 (512)
|+.-..+.....+.+..+.-++||.++++++......-||.-...-...-+.-...|.+|.|.|++...++ ...|.|++
T Consensus 133 G~tW~~~~~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~-~~Gg~~~~ 211 (302)
T PF14870_consen 133 GKTWQAVVSETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWML-ARGGQIQF 211 (302)
T ss_dssp TSSEEEEE-S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEE-ETTTEEEE
T ss_pred CCCeeEcccCCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEE-eCCcEEEE
Confidence 44333333355677899999999998888875555567775322222222334568999999999876554 48888888
Q ss_pred EeCCCCceeeecCCC-CCCCCCCceeEEEEEcCCCCCeEEEEcCCCcEEEEecCCeEEEEeeCCcccCCcEEEEEECCCC
Q 010362 375 WDLKSTDCLQTFKPP-PPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQVVKSFSSGKREGGDFVAACVSPKG 453 (512)
Q Consensus 375 wd~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g 453 (512)
=+... ...++..+ .+.......+..+++.+.+ . +.+++..|.+..-.-.|+.-............+..+.|.++.
T Consensus 212 s~~~~--~~~~w~~~~~~~~~~~~~~ld~a~~~~~-~-~wa~gg~G~l~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~ 287 (302)
T PF14870_consen 212 SDDPD--DGETWSEPIIPIKTNGYGILDLAYRPPN-E-IWAVGGSGTLLVSTDGGKTWQKDRVGENVPSNLYRIVFVNPD 287 (302)
T ss_dssp EE-TT--EEEEE---B-TTSS--S-EEEEEESSSS---EEEEESTT-EEEESSTTSS-EE-GGGTTSSS---EEEEEETT
T ss_pred ccCCC--CccccccccCCcccCceeeEEEEecCCC-C-EEEEeCCccEEEeCCCCccceECccccCCCCceEEEEEcCCC
Confidence 77221 11222211 1112234457888888764 4 444555565555444466666655544344557777776554
Q ss_pred CEEEEEeCCCeEEEE
Q 010362 454 EWIYCVGEDRNLYCF 468 (512)
Q Consensus 454 ~~l~~g~~dg~i~iw 468 (512)
+- ++-+.+|.+.-|
T Consensus 288 ~g-f~lG~~G~ll~~ 301 (302)
T PF14870_consen 288 KG-FVLGQDGVLLRY 301 (302)
T ss_dssp EE-EEE-STTEEEEE
T ss_pred ce-EEECCCcEEEEe
Confidence 44 444567776544
No 434
>PHA02790 Kelch-like protein; Provisional
Probab=95.83 E-value=1 Score=44.64 Aligned_cols=186 Identities=6% Similarity=-0.086 Sum_probs=85.7
Q ss_pred CCCeEEEEeCCC-----eEEEEEccCCeeeEEeccccccCeEEEEEecCCCEEEEEeCC--CcEEEEeCCCCceeEEeeC
Q 010362 274 DSEMLASGSQDG-----KIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFD--STARIHGLKSGKLLKEFRG 346 (512)
Q Consensus 274 ~~~~l~s~~~dg-----~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d--g~v~i~d~~~~~~~~~~~~ 346 (512)
++.+++.|+.++ ++..||..+++....-.......-.+++ .-++...+.|+.+ ..+..||..+++-.. ...
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v-~~~~~iYviGG~~~~~sve~ydp~~n~W~~-~~~ 348 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGV-PANNKLYVVGGLPNPTSVERWFHGDAAWVN-MPS 348 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEE-EECCEEEEECCcCCCCceEEEECCCCeEEE-CCC
Confidence 355666676543 5677888776543322111111111222 2367777777754 357888876543221 111
Q ss_pred Cccce-eEEEEcCCCCEEEEEeCCC---cEEEEeCCCCceeeecCCCCCCCCCCceeEEEEEcCCCCCeEEEEcCCCcEE
Q 010362 347 HSSYV-NDAIFTNDGSRVVTASSDC---TVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIY 422 (512)
Q Consensus 347 ~~~~v-~~~~~~~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~ 422 (512)
-..+. ......-+|+..+.||.++ .+..||.++.+-...-..+.+. .. .+++. -++.+.+.| |...
T Consensus 349 l~~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r----~~-~~~~~--~~~~IYv~G---G~~e 418 (480)
T PHA02790 349 LLKPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPH----YK-SCALV--FGRRLFLVG---RNAE 418 (480)
T ss_pred CCCCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCcc----cc-ceEEE--ECCEEEEEC---CceE
Confidence 11111 1111223566777777553 4678888765432211111110 11 11211 122455555 3467
Q ss_pred EEecCCeEEEEeeCCcccCCcEEEEEECCCCCEEEEEeCC-----CeEEEEEcCCC
Q 010362 423 IMTLQGQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGED-----RNLYCFSHQSG 473 (512)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d-----g~i~iwd~~~~ 473 (512)
.||................. ...+..-+|+..+.||.+ ..+.+||..++
T Consensus 419 ~ydp~~~~W~~~~~m~~~r~--~~~~~v~~~~IYviGG~~~~~~~~~ve~Yd~~~~ 472 (480)
T PHA02790 419 FYCESSNTWTLIDDPIYPRD--NPELIIVDNKLLLIGGFYRGSYIDTIEVYNNRTY 472 (480)
T ss_pred EecCCCCcEeEcCCCCCCcc--ccEEEEECCEEEEECCcCCCcccceEEEEECCCC
Confidence 78877554443332221111 112223366667777643 24555665544
No 435
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=95.80 E-value=0.0098 Score=59.73 Aligned_cols=166 Identities=17% Similarity=0.222 Sum_probs=99.4
Q ss_pred cCcCceEEEEECCC-CCEEEEEeCCCeEEEEEcC--CCeeeccccccccceeeccCcceeEEEEcC---CCCeEEEEeCC
Q 010362 211 GTKSHAECARFSPD-GQFLVSCSFDGFIEVWDYL--SGKLKKDLQYQADETFMMHDETVLCIEFSR---DSEMLASGSQD 284 (512)
Q Consensus 211 ~h~~~v~~~~~s~~-~~~l~sg~~dg~i~iwd~~--~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~---~~~~l~s~~~d 284 (512)
|..+.|-.++|-.. -..++ -.-|...||+++ .|+....+...+... ....+.-+.|.| +.-++..+..+
T Consensus 130 gf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p---~gs~~~~V~wcp~~~~~~~ic~~~~~ 204 (1283)
T KOG1916|consen 130 GFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITP---YGSDPQLVSWCPIAVNKVYICYGLKG 204 (1283)
T ss_pred cCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCc---CCCCcceeeecccccccceeeeccCC
Confidence 66677777777431 11111 223678899875 455555554433332 233445566665 66677778888
Q ss_pred CeEEEEEccCCeeeEEeccccccCeEEEE-----------EecCCCEEEEEeCCCcEEEEeCC-----CCceeEEeeCCc
Q 010362 285 GKIKVWRIRSGQCLRRLERAHSEGVTSLV-----------FSRDGSQILSTSFDSTARIHGLK-----SGKLLKEFRGHS 348 (512)
Q Consensus 285 g~i~vwd~~~~~~~~~~~~~~~~~i~~~~-----------~~~~~~~l~~~~~dg~v~i~d~~-----~~~~~~~~~~~~ 348 (512)
++|++.+..+... .+..+|...+..++ .+|||..++.++.||.++.|.+. ...++..++.|+
T Consensus 205 ~~i~lL~~~ra~~--~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd 282 (1283)
T KOG1916|consen 205 GEIRLLNINRALR--SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHD 282 (1283)
T ss_pred CceeEeeechHHH--HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCC
Confidence 9999888765432 22234655544433 58999999999999998887652 335566677776
Q ss_pred c-ceeEEEEcCCC---------CEEEEEeC-CCcEEEEeCCCCcee
Q 010362 349 S-YVNDAIFTNDG---------SRVVTASS-DCTVKVWDLKSTDCL 383 (512)
Q Consensus 349 ~-~v~~~~~~~~~---------~~l~~~~~-dg~i~iwd~~~~~~~ 383 (512)
+ +-.|..|+... .++++++. +..+++|.....+|.
T Consensus 283 ~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl 328 (1283)
T KOG1916|consen 283 KHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL 328 (1283)
T ss_pred CCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhh
Confidence 3 33333343321 13444443 556899987776665
No 436
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=95.77 E-value=1.2 Score=38.99 Aligned_cols=200 Identities=14% Similarity=0.162 Sum_probs=127.8
Q ss_pred cccCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeeCCccceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCceee
Q 010362 305 HSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQ 384 (512)
Q Consensus 305 ~~~~i~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 384 (512)
....-..++-.|||..-+++...+.|--.|..+|+....--+.......+...|||..-++-+.. .|.-.|-++... .
T Consensus 60 ~G~ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~ev-t 137 (353)
T COG4257 60 NGSAPFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEV-T 137 (353)
T ss_pred CCCCccccccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccce-E
Confidence 34455667788899888888888889999999998776555556667778889998876665444 566667665543 2
Q ss_pred ecCCCCCCCCCCceeEEEEEcCCCCCeEEEEcCCCcEEEEecCCeEEEEeeCCcccCCcEEEEEECCCCCEEEEEeCCCe
Q 010362 385 TFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRN 464 (512)
Q Consensus 385 ~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~dg~ 464 (512)
.+..+. ...........|.+.+ .+.+++. .|.---.|.....++.+... .+.....+|..|||..-++.-.+..
T Consensus 138 ~f~lp~--~~a~~nlet~vfD~~G-~lWFt~q-~G~yGrLdPa~~~i~vfpaP--qG~gpyGi~atpdGsvwyaslagna 211 (353)
T COG4257 138 RFPLPL--EHADANLETAVFDPWG-NLWFTGQ-IGAYGRLDPARNVISVFPAP--QGGGPYGICATPDGSVWYASLAGNA 211 (353)
T ss_pred Eeeccc--ccCCCcccceeeCCCc-cEEEeec-cccceecCcccCceeeeccC--CCCCCcceEECCCCcEEEEeccccc
Confidence 333322 2234456666777766 5555554 22222222223344444443 2445678999999998888777788
Q ss_pred EEEEEcCCCeeEEec--cccCCCeEEEEEcCCCCeEEEEECCCeEEEecC
Q 010362 465 LYCFSHQSGKLEHLM--KVHEKDVIGVTHHPHRNLLATYGEDCTMKLWKP 512 (512)
Q Consensus 465 i~iwd~~~~~~~~~~--~~h~~~v~~v~~~p~~~~l~s~~~dg~i~iW~~ 512 (512)
|-..|..++.....- ..-...-..+--+|.++.-+|-...+.+..+||
T Consensus 212 iaridp~~~~aev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdP 261 (353)
T COG4257 212 IARIDPFAGHAEVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDP 261 (353)
T ss_pred eEEcccccCCcceecCCCcccccccccccCccCcEEEeccCCceeeEeCc
Confidence 888887776332221 111233455666778888888777888887776
No 437
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.62 E-value=1.1 Score=42.22 Aligned_cols=117 Identities=9% Similarity=0.198 Sum_probs=77.3
Q ss_pred cCcceeEEEEcCCCCeEEEEeCCCeEEEEEccCCeeeEEecc---ccccCeEEEEEecCCCEEEEEeCCCcEEEEeCCC-
Q 010362 262 HDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLER---AHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKS- 337 (512)
Q Consensus 262 h~~~v~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~l~~~~~dg~v~i~d~~~- 337 (512)
..++|.++.||+|.+.+|+--.|.+|.+++....+....... ..+..|...+|+.+ .-+|.-+..| +-+|-...
T Consensus 65 d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~pe 142 (657)
T KOG2377|consen 65 DKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQVLPE 142 (657)
T ss_pred CCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecC-eeEEEEecCC-eEEEEEchh
Confidence 557999999999999999999999999999854433322221 22455899999866 4555555444 45554432
Q ss_pred CceeEEeeCCccceeEEEEcCCCCEEEEEe--CCCcEEEEeCCCC
Q 010362 338 GKLLKEFRGHSSYVNDAIFTNDGSRVVTAS--SDCTVKVWDLKST 380 (512)
Q Consensus 338 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~ 380 (512)
.+.++..+.|+..|+--.|.++.+.++.++ ..+++.=+-++++
T Consensus 143 krslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~~~ 187 (657)
T KOG2377|consen 143 KRSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFHFRAG 187 (657)
T ss_pred hhhhhhhhhcccCccEEEEccccceEeeeccccccccccEEEeec
Confidence 334555667888898889999877654433 3444444444444
No 438
>PHA02790 Kelch-like protein; Provisional
Probab=95.45 E-value=0.82 Score=45.38 Aligned_cols=180 Identities=10% Similarity=-0.005 Sum_probs=84.3
Q ss_pred CCCEEEEEeCCC-----cEEEEeCCCCceeE--EeeCCccceeEEEEcCCCCEEEEEeCC--CcEEEEeCCCCceeeecC
Q 010362 317 DGSQILSTSFDS-----TARIHGLKSGKLLK--EFRGHSSYVNDAIFTNDGSRVVTASSD--CTVKVWDLKSTDCLQTFK 387 (512)
Q Consensus 317 ~~~~l~~~~~dg-----~v~i~d~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~d--g~i~iwd~~~~~~~~~~~ 387 (512)
++..+++|+.++ .+..||..+++... .+........ ++ .-++...+.||.+ ..+..||..+++-... .
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~-~v-~~~~~iYviGG~~~~~sve~ydp~~n~W~~~-~ 347 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYAS-GV-PANNKLYVVGGLPNPTSVERWFHGDAAWVNM-P 347 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcce-EE-EECCEEEEECCcCCCCceEEEECCCCeEEEC-C
Confidence 344556665432 46678876654322 1111111111 12 2356666777753 3578888765532221 1
Q ss_pred CCCCCCCCCceeEEEEEcCCCCCeEEEEcCCC---cEEEEecCCeEEEEeeCCcccCCcEEEEEECCCCCEEEEEeCCCe
Q 010362 388 PPPPLRGGDASVNSVHLFPKNPDHIVVCNKTS---SIYIMTLQGQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRN 464 (512)
Q Consensus 388 ~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~---~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~dg~ 464 (512)
+.. ...... +++. .++.+.+.|+.++ .+..||................. ...+..-+|...+.| |.
T Consensus 348 ~l~---~~r~~~-~~~~--~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~--~~~~~~~~~~IYv~G---G~ 416 (480)
T PHA02790 348 SLL---KPRCNP-AVAS--INNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHY--KSCALVFGRRLFLVG---RN 416 (480)
T ss_pred CCC---CCCccc-EEEE--ECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccc--cceEEEECCEEEEEC---Cc
Confidence 111 001111 1111 1336666666543 46677777554443322221111 112223456555555 35
Q ss_pred EEEEEcCCCeeEE--eccccCCCeEEEEEcCCCCeEEEEECC-----CeEEEecC
Q 010362 465 LYCFSHQSGKLEH--LMKVHEKDVIGVTHHPHRNLLATYGED-----CTMKLWKP 512 (512)
Q Consensus 465 i~iwd~~~~~~~~--~~~~h~~~v~~v~~~p~~~~l~s~~~d-----g~i~iW~~ 512 (512)
+.+||..+++-.. .+.........+.. ++++.+.||.+ .+|..|||
T Consensus 417 ~e~ydp~~~~W~~~~~m~~~r~~~~~~v~--~~~IYviGG~~~~~~~~~ve~Yd~ 469 (480)
T PHA02790 417 AEFYCESSNTWTLIDDPIYPRDNPELIIV--DNKLLLIGGFYRGSYIDTIEVYNN 469 (480)
T ss_pred eEEecCCCCcEeEcCCCCCCccccEEEEE--CCEEEEECCcCCCcccceEEEEEC
Confidence 6788887665332 22222222222322 67788888754 35667775
No 439
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=95.43 E-value=2.3 Score=41.61 Aligned_cols=117 Identities=15% Similarity=0.254 Sum_probs=73.2
Q ss_pred cCcceeEEEEcCC----CCeEEEEeCCCeEEEEEcc-----CCeeeEEec----cccccCeEEEEEecCCCEEEEEeCCC
Q 010362 262 HDETVLCIEFSRD----SEMLASGSQDGKIKVWRIR-----SGQCLRRLE----RAHSEGVTSLVFSRDGSQILSTSFDS 328 (512)
Q Consensus 262 h~~~v~~l~~s~~----~~~l~s~~~dg~i~vwd~~-----~~~~~~~~~----~~~~~~i~~~~~~~~~~~l~~~~~dg 328 (512)
.-..|..+.|.|- ...|+.......|.||.+. .++.+.... ....--...+.|+|....|++-....
T Consensus 55 qFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~d 134 (671)
T PF15390_consen 55 QFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARD 134 (671)
T ss_pred ccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCc
Confidence 4467999999994 3244555567899999885 223222211 11122235788999988887766554
Q ss_pred cEEEEeCCCC--ceeEEeeCCccceeEEEEcCCCCEEEEEeC-CCcEEEEeCCC
Q 010362 329 TARIHGLKSG--KLLKEFRGHSSYVNDAIFTNDGSRVVTASS-DCTVKVWDLKS 379 (512)
Q Consensus 329 ~v~i~d~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~iwd~~~ 379 (512)
.-.+++++.. +....++ ..+.|.|.+|.+||+.|+++-. .=.-++||-..
T Consensus 135 vSV~~sV~~d~srVkaDi~-~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~q 187 (671)
T PF15390_consen 135 VSVLPSVHCDSSRVKADIK-TSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQ 187 (671)
T ss_pred eeEeeeeeeCCceEEEecc-CCceEEEEEecCcCCEEEEEeCCeEEEEEecCch
Confidence 4445555432 3333443 4567999999999998877643 33467888543
No 440
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=95.30 E-value=2.3 Score=38.91 Aligned_cols=282 Identities=16% Similarity=0.152 Sum_probs=128.1
Q ss_pred EEEecCcCceEEEEECCCCCEEEEEeCCCeEEEEEcCC-CeeeccccccccceeeccCcceeEEEEcCCCCeEEEEeCCC
Q 010362 207 TIKFGTKSHAECARFSPDGQFLVSCSFDGFIEVWDYLS-GKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQDG 285 (512)
Q Consensus 207 ~~~~~h~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg 285 (512)
.+..+....+..|.|.....-+++|. .|.| +...+ |+.-........ ..-.....++.|..+ ..+++| ..|
T Consensus 10 ~v~l~t~~~l~dV~F~d~~~G~~VG~-~g~i--l~T~DGG~tW~~~~~~~~---~~~~~~l~~I~f~~~-~g~ivG-~~g 81 (302)
T PF14870_consen 10 QVSLPTDKPLLDVAFVDPNHGWAVGA-YGTI--LKTTDGGKTWQPVSLDLD---NPFDYHLNSISFDGN-EGWIVG-EPG 81 (302)
T ss_dssp EEE-S-SS-EEEEEESSSS-EEEEET-TTEE--EEESSTTSS-EE-----S--------EEEEEEEETT-EEEEEE-ETT
T ss_pred EeecCCCCceEEEEEecCCEEEEEec-CCEE--EEECCCCccccccccCCC---ccceeeEEEEEecCC-ceEEEc-CCc
Confidence 34445667889999996666666665 5543 33333 322111111000 001224667777653 344444 445
Q ss_pred eEEEEEccCCeeeEEecc--ccccCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeE-EeeCCccceeEEEEcCCCCE
Q 010362 286 KIKVWRIRSGQCLRRLER--AHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLK-EFRGHSSYVNDAIFTNDGSR 362 (512)
Q Consensus 286 ~i~vwd~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~-~~~~~~~~v~~~~~~~~~~~ 362 (512)
+.+...+.|+.-..+.. .-+.....+....++ ....++..|.|+.=. +.|+.-. ....-.+.+..+.-+++|.+
T Consensus 82 -~ll~T~DgG~tW~~v~l~~~lpgs~~~i~~l~~~-~~~l~~~~G~iy~T~-DgG~tW~~~~~~~~gs~~~~~r~~dG~~ 158 (302)
T PF14870_consen 82 -LLLHTTDGGKTWERVPLSSKLPGSPFGITALGDG-SAELAGDRGAIYRTT-DGGKTWQAVVSETSGSINDITRSSDGRY 158 (302)
T ss_dssp -EEEEESSTTSS-EE----TT-SS-EEEEEEEETT-EEEEEETT--EEEES-STTSSEEEEE-S----EEEEEE-TTS-E
T ss_pred -eEEEecCCCCCcEEeecCCCCCCCeeEEEEcCCC-cEEEEcCCCcEEEeC-CCCCCeeEcccCCcceeEeEEECCCCcE
Confidence 33444445554444321 123334445444444 344445556554432 2333322 23344567888888999998
Q ss_pred EEEEeCCCcEEEEeCCCCceeeecCCCCCCCCCCceeEEEEEcCCCCCeEEEEcCCCcEEEEecC--CeEEEE-eeCCcc
Q 010362 363 VVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQ--GQVVKS-FSSGKR 439 (512)
Q Consensus 363 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~~~~~--~~~~~~-~~~~~~ 439 (512)
++++.......-||.-...-. ... ......+.++.|.|++ .+.+ ....|.++.-+.. ...... ......
T Consensus 159 vavs~~G~~~~s~~~G~~~w~-~~~-----r~~~~riq~~gf~~~~-~lw~-~~~Gg~~~~s~~~~~~~~w~~~~~~~~~ 230 (302)
T PF14870_consen 159 VAVSSRGNFYSSWDPGQTTWQ-PHN-----RNSSRRIQSMGFSPDG-NLWM-LARGGQIQFSDDPDDGETWSEPIIPIKT 230 (302)
T ss_dssp EEEETTSSEEEEE-TT-SS-E-EEE-------SSS-EEEEEE-TTS--EEE-EETTTEEEEEE-TTEEEEE---B-TTSS
T ss_pred EEEECcccEEEEecCCCccce-EEc-----cCccceehhceecCCC-CEEE-EeCCcEEEEccCCCCccccccccCCccc
Confidence 888766555567764422111 111 1234689999999985 4444 4488888888732 222222 122222
Q ss_pred cCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCeeEEecc---ccCCCeEEEEEcCCCCeEEEEECCCeEEEe
Q 010362 440 EGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMK---VHEKDVIGVTHHPHRNLLATYGEDCTMKLW 510 (512)
Q Consensus 440 ~~~~~~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~~---~h~~~v~~v~~~p~~~~l~s~~~dg~i~iW 510 (512)
....+..+++.+++...++|+. |.+ +.....|+--+... .-......|.|.++.+-+ ..+.+|.|.-|
T Consensus 231 ~~~~~ld~a~~~~~~~wa~gg~-G~l-~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf-~lG~~G~ll~~ 301 (302)
T PF14870_consen 231 NGYGILDLAYRPPNEIWAVGGS-GTL-LVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGF-VLGQDGVLLRY 301 (302)
T ss_dssp --S-EEEEEESSSS-EEEEEST-T-E-EEESSTTSS-EE-GGGTTSSS---EEEEEETTEEE-EE-STTEEEEE
T ss_pred CceeeEEEEecCCCCEEEEeCC-ccE-EEeCCCCccceECccccCCCCceEEEEEcCCCceE-EECCCcEEEEe
Confidence 3445889999998877776654 443 33444554333322 234567888887654444 45678887665
No 441
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=95.28 E-value=1.5 Score=44.65 Aligned_cols=151 Identities=14% Similarity=0.142 Sum_probs=90.7
Q ss_pred CCEEEEEeCCCeEEEEEcCCCeeec------cccccccc---------eeeccCcceeEEEEcC--CCCeEEEEeCCCeE
Q 010362 225 GQFLVSCSFDGFIEVWDYLSGKLKK------DLQYQADE---------TFMMHDETVLCIEFSR--DSEMLASGSQDGKI 287 (512)
Q Consensus 225 ~~~l~sg~~dg~i~iwd~~~~~~~~------~~~~~~~~---------~~~~h~~~v~~l~~s~--~~~~l~s~~~dg~i 287 (512)
+++++++. .+.|.||+.+.-.... .+...+.. +.. ....|+.|.... +...|+.|..||.|
T Consensus 49 ~n~LFiA~-~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p-~PHtIN~i~v~~lg~~EVLl~c~DdG~V 126 (717)
T PF08728_consen 49 RNLLFIAY-QSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWP-FPHTINFIKVGDLGGEEVLLLCTDDGDV 126 (717)
T ss_pred CCEEEEEE-CCEEEEEecCCcccccccccccccccCccccccccccccCCC-CCceeeEEEecccCCeeEEEEEecCCeE
Confidence 66777766 7899999986533211 11000000 000 223355555443 45689999999999
Q ss_pred EEEEccC-------C----ee-e------EEeccccccCeEEEEEe--cCCCEEEEEeCCCcEEEEeCCCC--ce-eEEe
Q 010362 288 KVWRIRS-------G----QC-L------RRLERAHSEGVTSLVFS--RDGSQILSTSFDSTARIHGLKSG--KL-LKEF 344 (512)
Q Consensus 288 ~vwd~~~-------~----~~-~------~~~~~~~~~~i~~~~~~--~~~~~l~~~~~dg~v~i~d~~~~--~~-~~~~ 344 (512)
.+|.+++ . .. . ..+.......+.+++++ ...++||+++....|.+|-.... +. ...-
T Consensus 127 ~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~~~~s 206 (717)
T PF08728_consen 127 LAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERFYHVPS 206 (717)
T ss_pred EEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCceEEEEEEeccccccccccc
Confidence 9997632 0 00 0 01111234578899998 77788888887777777754331 11 1111
Q ss_pred eCCccceeEEEEcCCC---C---EEEEEeCCCcEEEEeC
Q 010362 345 RGHSSYVNDAIFTNDG---S---RVVTASSDCTVKVWDL 377 (512)
Q Consensus 345 ~~~~~~v~~~~~~~~~---~---~l~~~~~dg~i~iwd~ 377 (512)
..+...|.+++|-++. . .+++++-.|.+.+|++
T Consensus 207 ~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 207 HQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred cccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 1244568889987643 2 7788899999998887
No 442
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=95.15 E-value=2.2 Score=37.91 Aligned_cols=197 Identities=11% Similarity=0.113 Sum_probs=106.4
Q ss_pred CcceeEEEEcCCCCeEEEEeCCCeEEEEEccCCeeeEEeccccc-cCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCc--
Q 010362 263 DETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHS-EGVTSLVFSRDGSQILSTSFDSTARIHGLKSGK-- 339 (512)
Q Consensus 263 ~~~v~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~-- 339 (512)
.+-+..+.++ +++...+..+.-++|.|+.+.........-.. +-..++.. .|++..++..|.-+.+.|+.+..
T Consensus 86 ~~l~~Dv~vs--e~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~v--sGn~aYVadlddgfLivdvsdpssP 161 (370)
T COG5276 86 RDLFADVRVS--EEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYV--SGNYAYVADLDDGFLIVDVSDPSSP 161 (370)
T ss_pred hhhhheeEec--ccEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEe--cCCEEEEeeccCcEEEEECCCCCCc
Confidence 3455667776 44677777788899999987654333321122 33344444 48899888877777888886543
Q ss_pred -eeEEeeCCccceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeecCCCCCCCCCCceeEEEEEcCCCCCeEEEEcCC
Q 010362 340 -LLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKT 418 (512)
Q Consensus 340 -~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~ 418 (512)
....+......-..++.+ |++-..+..|+-+.+-|+.......-+..- .....+.++..+++ .......+
T Consensus 162 ~lagrya~~~~d~~~v~IS--Gn~AYvA~~d~GL~ivDVSnp~sPvli~~~----n~g~g~~sv~vsdn---r~y~vvy~ 232 (370)
T COG5276 162 QLAGRYALPGGDTHDVAIS--GNYAYVAWRDGGLTIVDVSNPHSPVLIGSY----NTGPGTYSVSVSDN---RAYLVVYD 232 (370)
T ss_pred eeeeeeccCCCCceeEEEe--cCeEEEEEeCCCeEEEEccCCCCCeEEEEE----ecCCceEEEEecCC---eeEEEEcc
Confidence 223333333333455554 667778888999999998865322211110 11225566666653 33333344
Q ss_pred CcEEEEecCCeEEEEeeCCcccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCC
Q 010362 419 SSIYIMTLQGQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQS 472 (512)
Q Consensus 419 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~dg~i~iwd~~~ 472 (512)
.-+.+-|..+..-...........++....+.-.|++.+....+.-+-+-|+.+
T Consensus 233 egvlivd~s~~ssp~~~gsyet~~p~~~s~v~Vs~~~~Yvadga~gl~~idisn 286 (370)
T COG5276 233 EGVLIVDVSGPSSPTVFGSYETSNPVSISTVPVSGEYAYVADGAKGLPIIDISN 286 (370)
T ss_pred cceEEEecCCCCCceEeeccccCCcccccceecccceeeeeccccCceeEeccC
Confidence 445555665433222222221222222223334455555555555555555543
No 443
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=95.06 E-value=1.6 Score=41.61 Aligned_cols=145 Identities=12% Similarity=0.141 Sum_probs=77.5
Q ss_pred ceeEEEEcCCCCEEEEEe-----------CCC-cEEEEeCCCC--cee--eecCCCCCCCCCCceeEEEEEcCCCCCeEE
Q 010362 350 YVNDAIFTNDGSRVVTAS-----------SDC-TVKVWDLKST--DCL--QTFKPPPPLRGGDASVNSVHLFPKNPDHIV 413 (512)
Q Consensus 350 ~v~~~~~~~~~~~l~~~~-----------~dg-~i~iwd~~~~--~~~--~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~ 413 (512)
....|+|.++|+.+++-. ..+ .|.+++-.++ +.. ..+. ........+++.+++ ++
T Consensus 15 ~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa------~~l~~p~Gi~~~~~G---ly 85 (367)
T TIGR02604 15 NPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFA------EELSMVTGLAVAVGG---VY 85 (367)
T ss_pred CCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEee------cCCCCccceeEecCC---EE
Confidence 466788888888666542 123 6766654432 211 1221 112244677777765 44
Q ss_pred EEcCCCcEEEEecCC------eEEEEeeCCcc----cCCcEEEEEECCCCCEEEEEeCC-------------------Ce
Q 010362 414 VCNKTSSIYIMTLQG------QVVKSFSSGKR----EGGDFVAACVSPKGEWIYCVGED-------------------RN 464 (512)
Q Consensus 414 ~~~~~~~i~~~~~~~------~~~~~~~~~~~----~~~~~~~~~~s~~g~~l~~g~~d-------------------g~ 464 (512)
++......++.+..+ .....+..... .......+++.|||.+.++-+.. |.
T Consensus 86 V~~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~ 165 (367)
T TIGR02604 86 VATPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGG 165 (367)
T ss_pred EeCCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCce
Confidence 444443333435542 11111111111 12346789999999876655421 45
Q ss_pred EEEEEcCCCeeEEeccccCCCeEEEEEcCCCCeEEEEECC
Q 010362 465 LYCFSHQSGKLEHLMKVHEKDVIGVTHHPHRNLLATYGED 504 (512)
Q Consensus 465 i~iwd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~~~d 504 (512)
|.-++..+++.. .+.........++|+|++.++++-..+
T Consensus 166 i~r~~pdg~~~e-~~a~G~rnp~Gl~~d~~G~l~~tdn~~ 204 (367)
T TIGR02604 166 LFRYNPDGGKLR-VVAHGFQNPYGHSVDSWGDVFFCDNDD 204 (367)
T ss_pred EEEEecCCCeEE-EEecCcCCCccceECCCCCEEEEccCC
Confidence 666666655543 332223456789999999988765433
No 444
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=95.05 E-value=0.0032 Score=58.77 Aligned_cols=144 Identities=13% Similarity=0.142 Sum_probs=103.8
Q ss_pred eeEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeecCCCCCCCCCCceeEEEEEcCCCCCeEEEEcCCCcEEEEecCCeE
Q 010362 351 VNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQV 430 (512)
Q Consensus 351 v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~ 430 (512)
.....|.|.+.-++.++.+..+..||-. ++......+ .+....++|.-.++..++.+-..+.+++||+....
T Consensus 37 pi~~~w~~e~~nlavaca~tiv~~YD~a-gq~~le~n~-------tg~aldm~wDkegdvlavlAek~~piylwd~n~ey 108 (615)
T KOG2247|consen 37 PIIHRWRPEGHNLAVACANTIVIYYDKA-GQVILELNP-------TGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEY 108 (615)
T ss_pred cceeeEecCCCceehhhhhhHHHhhhhh-cceecccCC-------chhHhhhhhccccchhhhhhhcCCCeeechhhhhh
Confidence 3446788877778888888889999854 333333222 23455677877777888889999999999998654
Q ss_pred EEEeeCCcccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCeeEEeccccCCCeEEEEEcCCCCeEEEEECCC
Q 010362 431 VKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPHRNLLATYGEDC 505 (512)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~~~dg 505 (512)
...+..+..+... -+.|++.+..++.|...|.+.+++..+.+.+-....|...+++++|.+.+. .+.++.|.
T Consensus 109 tqqLE~gg~~s~s--ll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~-vil~dcd~ 180 (615)
T KOG2247|consen 109 TQQLESGGTSSKS--LLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDY-VILCDCDN 180 (615)
T ss_pred HHHHhccCcchHH--HHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccce-eeecCcHH
Confidence 4444433322222 278899999999999999999999888777666655999999999998654 44455444
No 445
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=95.03 E-value=2.1 Score=40.01 Aligned_cols=152 Identities=18% Similarity=0.190 Sum_probs=87.4
Q ss_pred cCceEEEEECCCCCEEEEEeCCCe------EEEEEcCCC-eeeccccccccceeeccCc--------ceeEEEEcCCCCe
Q 010362 213 KSHAECARFSPDGQFLVSCSFDGF------IEVWDYLSG-KLKKDLQYQADETFMMHDE--------TVLCIEFSRDSEM 277 (512)
Q Consensus 213 ~~~v~~~~~s~~~~~l~sg~~dg~------i~iwd~~~~-~~~~~~~~~~~~~~~~h~~--------~v~~l~~s~~~~~ 277 (512)
-+.++.+.+.|++..+++-+.+|. +..+++... .....+.......+....+ ..-+|++.++|.+
T Consensus 19 ~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~ 98 (326)
T PF13449_consen 19 FGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSF 98 (326)
T ss_pred cCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCE
Confidence 345778899876666666777777 655555431 1111111111111111111 3447888778888
Q ss_pred EEEEeCC------CeEEEEEccCCeeeEEec--------------cccccCeEEEEEecCCCEEEEEeC-----CC--c-
Q 010362 278 LASGSQD------GKIKVWRIRSGQCLRRLE--------------RAHSEGVTSLVFSRDGSQILSTSF-----DS--T- 329 (512)
Q Consensus 278 l~s~~~d------g~i~vwd~~~~~~~~~~~--------------~~~~~~i~~~~~~~~~~~l~~~~~-----dg--~- 329 (512)
+++.-.+ ..|..++.. |+....+. ...+....+++++|+|+.|+++.. |+ .
T Consensus 99 ~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~~ 177 (326)
T PF13449_consen 99 WISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRAN 177 (326)
T ss_pred EEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCcccc
Confidence 8877667 778888865 66544441 123456899999999997776543 22 1
Q ss_pred ------EE--EEeCCC-CceeEE----eeC-----CccceeEEEEcCCCCEEEE
Q 010362 330 ------AR--IHGLKS-GKLLKE----FRG-----HSSYVNDAIFTNDGSRVVT 365 (512)
Q Consensus 330 ------v~--i~d~~~-~~~~~~----~~~-----~~~~v~~~~~~~~~~~l~~ 365 (512)
++ .||..+ ++.... +.. ....+..+.+-+++++++.
T Consensus 178 ~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvL 231 (326)
T PF13449_consen 178 PDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVL 231 (326)
T ss_pred cccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEE
Confidence 34 455544 222222 221 2456888888888886654
No 446
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=94.99 E-value=1.3 Score=34.39 Aligned_cols=123 Identities=10% Similarity=0.178 Sum_probs=75.6
Q ss_pred EEEEECCCCCEEEEEeCCCeEEEEEcCCCeeeccccccccceeeccCcceeEEEEcC-----CCCeEEEEeCCCeEEEEE
Q 010362 217 ECARFSPDGQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSR-----DSEMLASGSQDGKIKVWR 291 (512)
Q Consensus 217 ~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~-----~~~~l~s~~~dg~i~vwd 291 (512)
..-.|......|+.++.-|+|.|++.........-..... .+..-...|++++-.+ +...|+.|+ ...+..||
T Consensus 2 aiGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i-~~LNin~~italaaG~l~~~~~~D~LliGt-~t~llaYD 79 (136)
T PF14781_consen 2 AIGKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDI-SFLNINQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYD 79 (136)
T ss_pred eEEEeCCCceeEEEEecCCEEEEECCCccccccccccCce-eEEECCCceEEEEEEecCCCCCcCEEEEec-cceEEEEE
Confidence 4456777777899999999999998654332111111111 2222556788886544 345677776 45899999
Q ss_pred ccCCeeeEEeccccccCeEEEEEec----CCCEEEEEeCCCcEEEEeCCCCceeEEe
Q 010362 292 IRSGQCLRRLERAHSEGVTSLVFSR----DGSQILSTSFDSTARIHGLKSGKLLKEF 344 (512)
Q Consensus 292 ~~~~~~~~~~~~~~~~~i~~~~~~~----~~~~l~~~~~dg~v~i~d~~~~~~~~~~ 344 (512)
+.....+..- .-...|.++.+-. +...+++|+ +..|.-+|....+...+.
T Consensus 80 V~~N~d~Fyk--e~~DGvn~i~~g~~~~~~~~l~ivGG-ncsi~Gfd~~G~e~fWtV 133 (136)
T PF14781_consen 80 VENNSDLFYK--EVPDGVNAIVIGKLGDIPSPLVIVGG-NCSIQGFDYEGNEIFWTV 133 (136)
T ss_pred cccCchhhhh--hCccceeEEEEEecCCCCCcEEEECc-eEEEEEeCCCCcEEEEEe
Confidence 9887655432 3457788887743 234444444 667777776555554443
No 447
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=94.86 E-value=1.1 Score=45.16 Aligned_cols=99 Identities=15% Similarity=0.127 Sum_probs=67.8
Q ss_pred CeEEEEcCCCcEEEEecCCeEEEEeeCCcccCCcEEEEEE--CCCCCEEEEEeCCCeEEEEEcC-----C----CeeEEe
Q 010362 410 DHIVVCNKTSSIYIMTLQGQVVKSFSSGKREGGDFVAACV--SPKGEWIYCVGEDRNLYCFSHQ-----S----GKLEHL 478 (512)
Q Consensus 410 ~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~--s~~g~~l~~g~~dg~i~iwd~~-----~----~~~~~~ 478 (512)
...++.+....+.|||.++.....-... .....|..+.| .|+|+.+++.|..+.|.+|.-. + -.++..
T Consensus 42 k~a~V~~~~~~LtIWD~~~~~lE~~~~f-~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~w~~i~~ 120 (631)
T PF12234_consen 42 KIAVVDSSRSELTIWDTRSGVLEYEESF-SEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGPSWAPIRK 120 (631)
T ss_pred cEEEEECCCCEEEEEEcCCcEEEEeeee-cCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCcccceeEE
Confidence 4555556667899999996664433332 34567888888 6899999999999999998542 1 122322
Q ss_pred --ccccC-CCeEEEEEcCCCCeEEEEECCCeEEEec
Q 010362 479 --MKVHE-KDVIGVTHHPHRNLLATYGEDCTMKLWK 511 (512)
Q Consensus 479 --~~~h~-~~v~~v~~~p~~~~l~s~~~dg~i~iW~ 511 (512)
+..|+ .+|.+..|.++|.+++.+| +.+.|++
T Consensus 121 i~i~~~T~h~Igds~Wl~~G~LvV~sG--Nqlfv~d 154 (631)
T PF12234_consen 121 IDISSHTPHPIGDSIWLKDGTLVVGSG--NQLFVFD 154 (631)
T ss_pred EEeecCCCCCccceeEecCCeEEEEeC--CEEEEEC
Confidence 23344 6799999999998776554 3566655
No 448
>PRK13684 Ycf48-like protein; Provisional
Probab=94.84 E-value=3.5 Score=38.67 Aligned_cols=169 Identities=12% Similarity=0.077 Sum_probs=89.0
Q ss_pred CCeeeEEeccccccCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEee-CCccceeEEEEcCCCCEEEEEeCCCcE
Q 010362 294 SGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFR-GHSSYVNDAIFTNDGSRVVTASSDCTV 372 (512)
Q Consensus 294 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i 372 (512)
.|+.-..+.......+.++.+.|++.+++++. .|.+..-.-..++.-.... .-...++++.+.++++.++++ ..|.+
T Consensus 160 gG~tW~~~~~~~~g~~~~i~~~~~g~~v~~g~-~G~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~ 237 (334)
T PRK13684 160 GGKNWEALVEDAAGVVRNLRRSPDGKYVAVSS-RGNFYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQI 237 (334)
T ss_pred CCCCceeCcCCCcceEEEEEECCCCeEEEEeC-CceEEEEcCCCCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEE
Confidence 34444444334456788999999886665554 5655432112223222222 234578899999998866654 56766
Q ss_pred EEEeCCCCceeeecCCCCCCCCCCceeEEEEEcCCCCCeEEEEcCCCcEEEEecCCeEEEEeeCCcccCCcEEEEEECCC
Q 010362 373 KVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQVVKSFSSGKREGGDFVAACVSPK 452 (512)
Q Consensus 373 ~iwd~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 452 (512)
++=....+..-.....+. ......+.++.+.|.+ . +++++.+|.+..-.-.+..................+.+..+
T Consensus 238 ~~~s~d~G~sW~~~~~~~--~~~~~~l~~v~~~~~~-~-~~~~G~~G~v~~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~ 313 (334)
T PRK13684 238 RFNDPDDLESWSKPIIPE--ITNGYGYLDLAYRTPG-E-IWAGGGNGTLLVSKDGGKTWEKDPVGEEVPSNFYKIVFLDP 313 (334)
T ss_pred EEccCCCCCccccccCCc--cccccceeeEEEcCCC-C-EEEEcCCCeEEEeCCCCCCCeECCcCCCCCcceEEEEEeCC
Confidence 432333433222211110 1123456778888754 3 55555667665433224443333221111234667777666
Q ss_pred CCEEEEEeCCCeEEEEE
Q 010362 453 GEWIYCVGEDRNLYCFS 469 (512)
Q Consensus 453 g~~l~~g~~dg~i~iwd 469 (512)
++.++ .+..|.|..|+
T Consensus 314 ~~~~~-~G~~G~il~~~ 329 (334)
T PRK13684 314 EKGFV-LGQRGVLLRYV 329 (334)
T ss_pred CceEE-ECCCceEEEec
Confidence 65544 55678877665
No 449
>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2. Unpublished observations.
Probab=94.80 E-value=3.3 Score=38.19 Aligned_cols=237 Identities=13% Similarity=0.089 Sum_probs=112.2
Q ss_pred CCCEEEEEeCCCeEEEEEcCCC--eeeccccccccceeeccCcceeEEEEcCCCCeEEEEe-CCCeEEEEEccCCee---
Q 010362 224 DGQFLVSCSFDGFIEVWDYLSG--KLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGS-QDGKIKVWRIRSGQC--- 297 (512)
Q Consensus 224 ~~~~l~sg~~dg~i~iwd~~~~--~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~-~dg~i~vwd~~~~~~--- 297 (512)
++++|+.|+.+|...+ +.... +..+. .+..+|+++...+.-+.|++-+ ....++++++..-..
T Consensus 12 ~~~~lL~GTe~Gly~~-~~~~~~~~~~kl----------~~~~~v~q~~v~~~~~lLi~Lsgk~~~L~~~~L~~L~~~~~ 80 (302)
T smart00036 12 DGKWLLVGTEEGLYVL-NISDQPGTLEKL----------IGRRSVTQIWVLEENNVLLMISGKKPQLYSHPLSALVEKKE 80 (302)
T ss_pred CCcEEEEEeCCceEEE-EcccCCCCeEEe----------cCcCceEEEEEEhhhCEEEEEeCCcceEEEEEHHHhhhhhh
Confidence 3468999998885444 45432 22211 2567899999999877776655 233499999843221
Q ss_pred -----------eEEeccccccCeEEEEEecCC-CEEEEEeCCCcEEEEeCCCC----ceeEEe---eC-CccceeEEEEc
Q 010362 298 -----------LRRLERAHSEGVTSLVFSRDG-SQILSTSFDSTARIHGLKSG----KLLKEF---RG-HSSYVNDAIFT 357 (512)
Q Consensus 298 -----------~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~v~i~d~~~~----~~~~~~---~~-~~~~v~~~~~~ 357 (512)
.......+......+...... ..++++....+|.++..... ...+.+ .. -..++..+..+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~tkGc~~~~v~~~~~~~~l~~A~~~~i~l~~~~~~~~~f~~~k~~~~~~~~~~~~~~~~~~~ 160 (302)
T smart00036 81 ALGSARLVIRKNVLTKIPDTKGCHLCAVVNGKRSLFLCVALQSSVVLLQWYNPLKKFKLFKSKFLFPLISPVPVFVELVS 160 (302)
T ss_pred ccCCccccccccceEeCCcCCceEEEEEEcCCCcEEEEEEcCCeEEEEEccChhhhhhhhcccccccCCCCccceEeeec
Confidence 000111344434444443222 23345555667777644222 111111 00 11233333333
Q ss_pred CC--CCEEEEEeCCCcEEEEeCCC--CceeeecCCCCCCCCCC-ceeEEEEEcCCCCCeEEEEcCCCcEEEEecCC-eEE
Q 010362 358 ND--GSRVVTASSDCTVKVWDLKS--TDCLQTFKPPPPLRGGD-ASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQG-QVV 431 (512)
Q Consensus 358 ~~--~~~l~~~~~dg~i~iwd~~~--~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~l~~~~~~~~i~~~~~~~-~~~ 431 (512)
++ ...+..|+..+...++++.. ...... .......... .++....+ ++ ..++.+..+. ..+.|..| ...
T Consensus 161 ~~~~~~~lcvG~~~~~~~~~~~~~~~~~~~d~-sl~~~~~~~~~~p~~i~~l-~~--~e~Llc~~~~-~v~Vn~~G~~~~ 235 (302)
T smart00036 161 SSFERPGICIGSDKGGGDVVQFHESLVSKEDL-SLPFLSEETSLKPISVVQV-PR--DEFLLCYDEF-GVFVNLYGKRRS 235 (302)
T ss_pred ccccceEEEEEEcCCCCeEEEEeecccccccc-cccccccccccCceEEEEE-CC--CeEEEEECcE-EEEEeCCCCccc
Confidence 32 45677777653355555533 110000 0000000111 22222222 22 3444444433 44445555 222
Q ss_pred EEeeCCcccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCeeEEeccc
Q 010362 432 KSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKV 481 (512)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~ 481 (512)
+..... -.....++++. ..++++-+. ..|.++++.++++++++..
T Consensus 236 r~~~l~--w~~~p~~~~~~--~pyll~~~~-~~ievr~l~~~~l~q~i~~ 280 (302)
T smart00036 236 RNPILH--WEFMPESFAYH--SPYLLAFHD-NGIEIRSIKTGELLQELAD 280 (302)
T ss_pred cceEEE--cCCcccEEEEE--CCEEEEEcC-CcEEEEECCCCceEEEEec
Confidence 111110 01223455554 466766654 4599999999998888863
No 450
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=94.78 E-value=3.6 Score=38.49 Aligned_cols=150 Identities=17% Similarity=0.318 Sum_probs=87.4
Q ss_pred cceeEEEEcCCCCEEEEEeCCCc------EEEEeCCCC----ceeeecCCCCCCCC--------CCceeEEEEEcCCCCC
Q 010362 349 SYVNDAIFTNDGSRVVTASSDCT------VKVWDLKST----DCLQTFKPPPPLRG--------GDASVNSVHLFPKNPD 410 (512)
Q Consensus 349 ~~v~~~~~~~~~~~l~~~~~dg~------i~iwd~~~~----~~~~~~~~~~~~~~--------~~~~i~~~~~~~~~~~ 410 (512)
+.+..+.+.+++..+++.+.+|. +..+++... ..+. +.....+.. ......++++ +.+..
T Consensus 20 GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~L~~~~G~~~~~~~~D~Egi~~-~~~g~ 97 (326)
T PF13449_consen 20 GGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVT-ILDMIPLRDPDGQPFPKNGLDPEGIAV-PPDGS 97 (326)
T ss_pred CcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceE-eccceeccCCCCCcCCcCCCChhHeEE-ecCCC
Confidence 45778888876667777777777 555555431 0011 000001111 1124457777 44447
Q ss_pred eEEEEcCC------CcEEEEecCCeEEEEee------------CCcccCCcEEEEEECCCCCEEEEEeC-----CC----
Q 010362 411 HIVVCNKT------SSIYIMTLQGQVVKSFS------------SGKREGGDFVAACVSPKGEWIYCVGE-----DR---- 463 (512)
Q Consensus 411 ~l~~~~~~------~~i~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~s~~g~~l~~g~~-----dg---- 463 (512)
++++.-.+ ..|+.++..|.....+. .....+..+-.++++|+|+.|+++.+ |+
T Consensus 98 ~~is~E~~~~~~~~p~I~~~~~~G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~~ 177 (326)
T PF13449_consen 98 FWISSEGGRTGGIPPRIRRFDLDGRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRAN 177 (326)
T ss_pred EEEEeCCccCCCCCCEEEEECCCCcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCcccc
Confidence 77777777 78999998876544442 11234566889999999997776653 22
Q ss_pred -------eEEEEEcCC-CeeEE----eccc-----cCCCeEEEEEcCCCCeEEE
Q 010362 464 -------NLYCFSHQS-GKLEH----LMKV-----HEKDVIGVTHHPHRNLLAT 500 (512)
Q Consensus 464 -------~i~iwd~~~-~~~~~----~~~~-----h~~~v~~v~~~p~~~~l~s 500 (512)
.|..||..+ +.... .+.. ....|..+.+-+++++++-
T Consensus 178 ~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvL 231 (326)
T PF13449_consen 178 PDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVL 231 (326)
T ss_pred cccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEE
Confidence 244455554 32222 2222 3467889999999886653
No 451
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=94.68 E-value=1.6 Score=36.59 Aligned_cols=181 Identities=15% Similarity=0.132 Sum_probs=102.4
Q ss_pred CCCEEEEEeC--CCeEEEEEcCCCeeeccccccccceeeccCcceeEEEEcCCCCeEE-EEeCCCeEEEEEccCCeeeEE
Q 010362 224 DGQFLVSCSF--DGFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLA-SGSQDGKIKVWRIRSGQCLRR 300 (512)
Q Consensus 224 ~~~~l~sg~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~-s~~~dg~i~vwd~~~~~~~~~ 300 (512)
+|.++.+.+. ...|++||+.+++.....+..+...| ...++.+ ++++. -.-.+|.-..+|.++-+++..
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~F---gEGit~~-----gd~~y~LTw~egvaf~~d~~t~~~lg~ 126 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVF---GEGITKL-----GDYFYQLTWKEGVAFKYDADTLEELGR 126 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCCcccc---ccceeec-----cceEEEEEeccceeEEEChHHhhhhcc
Confidence 4556665553 44799999999887765544321111 1122211 22222 223578888999998888877
Q ss_pred eccccccCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeeC--Cccc---eeEEEEcCCCCEEEEEeCCCcEEEE
Q 010362 301 LERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRG--HSSY---VNDAIFTNDGSRVVTASSDCTVKVW 375 (512)
Q Consensus 301 ~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~--~~~~---v~~~~~~~~~~~l~~~~~dg~i~iw 375 (512)
+. ..+.=..++ .|+..|+.++...+++.-|.++.....++.- ...+ ++-+.|- +|...+-.-.+..|...
T Consensus 127 ~~--y~GeGWgLt--~d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~lyANVw~t~~I~rI 201 (262)
T COG3823 127 FS--YEGEGWGLT--SDDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGELYANVWQTTRIARI 201 (262)
T ss_pred cc--cCCcceeee--cCCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccEEEEeeeeecceEEE
Confidence 75 334444444 3566677766666777777766544433321 1112 3334443 45555544455566666
Q ss_pred eCCCCceeeecCCCC------CCCCCCceeEEEEEcCCCCCeEEEEcC
Q 010362 376 DLKSTDCLQTFKPPP------PLRGGDASVNSVHLFPKNPDHIVVCNK 417 (512)
Q Consensus 376 d~~~~~~~~~~~~~~------~~~~~~~~i~~~~~~~~~~~~l~~~~~ 417 (512)
|..+|+....+.... ....+..-.+.+++.|....++++|-.
T Consensus 202 ~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTGK~ 249 (262)
T COG3823 202 DPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITGKL 249 (262)
T ss_pred cCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEecCc
Confidence 777777665544322 112334567888998888677776644
No 452
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.66 E-value=2.7 Score=42.40 Aligned_cols=174 Identities=14% Similarity=0.167 Sum_probs=84.9
Q ss_pred CCcEEEEeCCCCceeEEeeCCccceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeecCCCCCCCCCCceeEEEEEcC
Q 010362 327 DSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFP 406 (512)
Q Consensus 327 dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 406 (512)
--.|+|+++ +|..+..+.-..+.+..+.|+.+. .|++...+|++++|++-... ...... ........|....+..
T Consensus 63 ~~~I~If~~-sG~lL~~~~w~~~~lI~mgWs~~e-eLI~v~k~g~v~Vy~~~ge~-ie~~sv--g~e~~~~~I~ec~~f~ 137 (829)
T KOG2280|consen 63 RPYIRIFNI-SGQLLGRILWKHGELIGMGWSDDE-ELICVQKDGTVHVYGLLGEF-IESNSV--GFESQMSDIVECRFFH 137 (829)
T ss_pred ceeEEEEec-cccchHHHHhcCCCeeeecccCCc-eEEEEeccceEEEeecchhh-hccccc--ccccccCceeEEEEec
Confidence 346888887 677776655444578889999775 57778899999999986432 222110 0011222344444433
Q ss_pred CCCCeEEEEcCCCcEEEEecC-CeEEEEeeCCcccCCcEEEEEECCCCC---EEEEEe-CCC-eEEEEEcCCCeeEEecc
Q 010362 407 KNPDHIVVCNKTSSIYIMTLQ-GQVVKSFSSGKREGGDFVAACVSPKGE---WIYCVG-EDR-NLYCFSHQSGKLEHLMK 480 (512)
Q Consensus 407 ~~~~~l~~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~s~~g~---~l~~g~-~dg-~i~iwd~~~~~~~~~~~ 480 (512)
+-+++-..+|.+.+.+-. ..........+...-+..+-..-+++. .++-.. ..| .+..-+..+.+... +.
T Consensus 138 ---~GVavlt~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~~q~~~-~~ 213 (829)
T KOG2280|consen 138 ---NGVAVLTVSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVGLHICQVEESRVQLHA-LS 213 (829)
T ss_pred ---CceEEEecCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhhhcccceecccccccc-cC
Confidence 234444444554443332 222222222111111111211122211 111111 111 11111111122221 22
Q ss_pred ccCCCeEEEEEcCCCCeEEEEECCCeEEE
Q 010362 481 VHEKDVIGVTHHPHRNLLATYGEDCTMKL 509 (512)
Q Consensus 481 ~h~~~v~~v~~~p~~~~l~s~~~dg~i~i 509 (512)
...+.+..+..||++++|+--..+|.|.+
T Consensus 214 ~~~~~~~ki~VS~n~~~laLyt~~G~i~~ 242 (829)
T KOG2280|consen 214 WPNSSVVKISVSPNRRFLALYTETGKIWV 242 (829)
T ss_pred CCCceEEEEEEcCCcceEEEEecCCcEEE
Confidence 22356778889999999998888888765
No 453
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=94.58 E-value=4.2 Score=38.33 Aligned_cols=188 Identities=18% Similarity=0.249 Sum_probs=106.0
Q ss_pred cCCCEEEEEeCCCcEEEEeCCCCceeEEeeCCccceeEEEEc----CCCCE--EEEEe-CC---CcEEEEeCCC--Ccee
Q 010362 316 RDGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFT----NDGSR--VVTAS-SD---CTVKVWDLKS--TDCL 383 (512)
Q Consensus 316 ~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~----~~~~~--l~~~~-~d---g~i~iwd~~~--~~~~ 383 (512)
|..++++....++-+.+||+ .|+.+..+.. +.++.+..- -.|+. |+.++ .+ .+|++|.+.. +. +
T Consensus 66 p~kSlIigTdK~~GL~VYdL-~Gk~lq~~~~--Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~-L 141 (381)
T PF02333_consen 66 PAKSLIIGTDKKGGLYVYDL-DGKELQSLPV--GRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGE-L 141 (381)
T ss_dssp GGG-EEEEEETTTEEEEEET-TS-EEEEE-S--S-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTE-E
T ss_pred cccceEEEEeCCCCEEEEcC-CCcEEEeecC--CCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCc-c
Confidence 34567888888899999999 5777776642 334433332 13333 34443 32 4699997653 32 2
Q ss_pred eecCCC-CCCCCCCceeEEEEEc--CC-CCCeEEEEcCCCcEEEEecC----C----eEEEEeeCCcccCCcEEEEEECC
Q 010362 384 QTFKPP-PPLRGGDASVNSVHLF--PK-NPDHIVVCNKTSSIYIMTLQ----G----QVVKSFSSGKREGGDFVAACVSP 451 (512)
Q Consensus 384 ~~~~~~-~~~~~~~~~i~~~~~~--~~-~~~~l~~~~~~~~i~~~~~~----~----~~~~~~~~~~~~~~~~~~~~~s~ 451 (512)
..+... .+.......++.+++. |. +..++++...+|.+.-|.+. + ..++.+.. .+.+..+....
T Consensus 142 ~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~----~sQ~EGCVVDD 217 (381)
T PF02333_consen 142 TDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKV----GSQPEGCVVDD 217 (381)
T ss_dssp EE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-----SS-EEEEEEET
T ss_pred eEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecC----CCcceEEEEec
Confidence 222211 1111222346777764 43 33467778888988887764 2 23455544 33578888888
Q ss_pred CCCEEEEEeCCCeEEEEEcCC-----CeeEEeccc--cCCCeEEEEEcC--CC--CeEEEEECCCeEEEec
Q 010362 452 KGEWIYCVGEDRNLYCFSHQS-----GKLEHLMKV--HEKDVIGVTHHP--HR--NLLATYGEDCTMKLWK 511 (512)
Q Consensus 452 ~g~~l~~g~~dg~i~iwd~~~-----~~~~~~~~~--h~~~v~~v~~~p--~~--~~l~s~~~dg~i~iW~ 511 (512)
...+|+.|-++.-|.-|+... +.++....+ ....|-.|+.-. ++ -+|+|.-.+++..||+
T Consensus 218 e~g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~ 288 (381)
T PF02333_consen 218 ETGRLYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYD 288 (381)
T ss_dssp TTTEEEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEE
T ss_pred ccCCEEEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEe
Confidence 889999999999898888762 233333322 245677777643 33 2445554677888886
No 454
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=94.49 E-value=0.21 Score=29.90 Aligned_cols=32 Identities=28% Similarity=0.577 Sum_probs=26.7
Q ss_pred cceeEEEEcCCC---CeEEEEeCCCeEEEEEccCC
Q 010362 264 ETVLCIEFSRDS---EMLASGSQDGKIKVWRIRSG 295 (512)
Q Consensus 264 ~~v~~l~~s~~~---~~l~s~~~dg~i~vwd~~~~ 295 (512)
+.|.+++|+|++ .+|+.+-.-|.|.|+|++++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 468999999844 58888888899999999863
No 455
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=94.48 E-value=7.8 Score=41.09 Aligned_cols=165 Identities=15% Similarity=0.152 Sum_probs=98.8
Q ss_pred cCcCceEEEEEC---C----CCCEEEEEeCCCeEEEEEcCCCee-------eccccccccceeec---cCcceeEEEEcC
Q 010362 211 GTKSHAECARFS---P----DGQFLVSCSFDGFIEVWDYLSGKL-------KKDLQYQADETFMM---HDETVLCIEFSR 273 (512)
Q Consensus 211 ~h~~~v~~~~~s---~----~~~~l~sg~~dg~i~iwd~~~~~~-------~~~~~~~~~~~~~~---h~~~v~~l~~s~ 273 (512)
.-..+|..|+|. . ..++|++=. ...+.|+...-.+. ...+...+...+.. ...+...++|+|
T Consensus 77 ~~~~PI~qI~fa~~~~~~~~~~~~l~Vrt-~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP 155 (765)
T PF10214_consen 77 DDGSPIKQIKFATLSESFDEKSRWLAVRT-ETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNP 155 (765)
T ss_pred CCCCCeeEEEecccccccCCcCcEEEEEc-CCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEecc
Confidence 456778888887 2 234665544 56677777221111 12222222222221 335678999999
Q ss_pred -CCCeEEEEeCCCeEEEEEccCCe----eeEEecccc----------ccCeEEEEEecCCCEEEEEeCCCcEEEEeCCCC
Q 010362 274 -DSEMLASGSQDGKIKVWRIRSGQ----CLRRLERAH----------SEGVTSLVFSRDGSQILSTSFDSTARIHGLKSG 338 (512)
Q Consensus 274 -~~~~l~s~~~dg~i~vwd~~~~~----~~~~~~~~~----------~~~i~~~~~~~~~~~l~~~~~dg~v~i~d~~~~ 338 (512)
+...||.....|.-.||++..+. ......... ...-..+.|.++.+.|++++ ...+.++|+++.
T Consensus 156 ~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~-r~~l~~~d~~~~ 234 (765)
T PF10214_consen 156 WDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCN-RSKLMLIDFESN 234 (765)
T ss_pred CccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEc-CCceEEEECCCC
Confidence 55689999999999999992111 111111111 12334788988888888887 457889999877
Q ss_pred ceeE--EeeCCccceeEEEEcCC--CCEEEEEeCCCcEEEEeCCC
Q 010362 339 KLLK--EFRGHSSYVNDAIFTND--GSRVVTASSDCTVKVWDLKS 379 (512)
Q Consensus 339 ~~~~--~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~iwd~~~ 379 (512)
.... ........|.++.-+|. +..++..+ ..|...++..
T Consensus 235 ~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLTs--~eiiw~~~~~ 277 (765)
T PF10214_consen 235 WQTEYLVTAKTWSWILDVKRSPDNPSHVFILTS--KEIIWLDVKS 277 (765)
T ss_pred CccchhccCCChhheeeEEecCCccceEEEEec--CeEEEEEccC
Confidence 5533 11224457888888886 33444433 4677778776
No 456
>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A ....
Probab=94.42 E-value=6.2 Score=39.62 Aligned_cols=284 Identities=11% Similarity=0.104 Sum_probs=0.0
Q ss_pred CEEEEEeCCCeEEEEEcCCCeeeccccc-----cccceeeccCcceeEEEEcCCCCeEEEEeCCCeEEEEEccC-----C
Q 010362 226 QFLVSCSFDGFIEVWDYLSGKLKKDLQY-----QADETFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWRIRS-----G 295 (512)
Q Consensus 226 ~~l~sg~~dg~i~iwd~~~~~~~~~~~~-----~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~vwd~~~-----~ 295 (512)
++|+.++.+|.+.+-.+..........+ ............-..++..|.|+.++.+..+|.+.++-+.. .
T Consensus 1 D~L~v~tdsg~l~~l~~~~~~~~~~~~~v~~~~~~~~~~~r~~~~G~~l~vDP~~R~i~v~a~e~~~~v~~l~~~~~~~~ 80 (504)
T PF10433_consen 1 DSLVVTTDSGKLSILEYDPSTHGFFKEFVHQWEPLSKSGSRLSQPGQYLAVDPSGRCIAVSAYEGNFLVYPLNRSLDSDI 80 (504)
T ss_dssp -EEEEEETTTEEEEEEEEEETTEE-E-EEEEEEE---SSSEB-TT--EEEE-TTSSEEEEEEBTTEEEEEE-SS----T-
T ss_pred CEEEEEECCCCEEEEEEECCCCccceeeEEEeEecCCCCCChhcCCcEEEECCcCCEEEEEecCCeEEEEEecccccccc
Q ss_pred eeeEEecccc--ccCeEEEEEec-----CCCEEEEEeCCCc----EEEEeCCCCceeEEeeCCccce----------eEE
Q 010362 296 QCLRRLERAH--SEGVTSLVFSR-----DGSQILSTSFDST----ARIHGLKSGKLLKEFRGHSSYV----------NDA 354 (512)
Q Consensus 296 ~~~~~~~~~~--~~~i~~~~~~~-----~~~~l~~~~~dg~----v~i~d~~~~~~~~~~~~~~~~v----------~~~ 354 (512)
.....+...- ...|.+++|.. +...++.--.+.. +..++......+.......... .-+
T Consensus 81 ~~~~~~~~pi~s~~~i~~~~FL~~~~~~~~p~la~L~~~~~~~~~~~~y~w~~~~~l~~~~~~~~~~~~l~~~~~~p~~L 160 (504)
T PF10433_consen 81 AFSPHINSPIKSEGNILDMCFLHPSVGYDNPTLAILYVDSQRRTHLVTYEWSLDDGLNHVISKSTLPIRLPNEDELPSFL 160 (504)
T ss_dssp TT---EEEE--S-SEEEEEEEES---S-SS-EEEEEEEETT-EEEEEEEE--------EETTTTEEEE--EEEE-TTEEE
T ss_pred cccccccccccCCceEEEEEEEecccCCCCceEEEEEEEecccceeEEEeeecccccceeeeeccccccccccCCCccEE
Q ss_pred EEcCCCCEEEEEeCCCcEEEEeCCCCceeeecCCCCCC-CCCCceeEEEEE------cCCCCCeEEEEcCCCcEEEEecC
Q 010362 355 IFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPL-RGGDASVNSVHL------FPKNPDHIVVCNKTSSIYIMTLQ 427 (512)
Q Consensus 355 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~~~~~i~~~~~------~~~~~~~l~~~~~~~~i~~~~~~ 427 (512)
.--|...-.+..+.++.+.+-+................ .....-+.+... ...+...++.+..+|.++...+.
T Consensus 161 IPlp~~~ggllV~~~~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~lL~~e~G~l~~l~l~ 240 (504)
T PF10433_consen 161 IPLPNPPGGLLVGGENIIIYKNHLIGSGDYSFLSIPSPPSSSSSLWTSWARPERNISYDKDGDRILLQDEDGDLYLLTLD 240 (504)
T ss_dssp EEE-TTT-SEEEEESSEEEEEE------TTEEEEE--H-HHHTS-EEEEEE------SSTTSSEEEEEETTSEEEEEEEE
T ss_pred EEcCCCCcEEEEECCEEEEEecccccccccccccccCCccCCCceEEEEEeccccceecCCCCEEEEEeCCCeEEEEEEE
Q ss_pred CeE--EEEeeCCcccCCcEEEEEECCCC-CEEEEEe--CCCeEEEEEcCCCeeEEeccccCCCeEEEEEcCCC-------
Q 010362 428 GQV--VKSFSSGKREGGDFVAACVSPKG-EWIYCVG--EDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPHR------- 495 (512)
Q Consensus 428 ~~~--~~~~~~~~~~~~~~~~~~~s~~g-~~l~~g~--~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~p~~------- 495 (512)
... +.....+.. .....++++-.+| .+++.|+ .|+.+.-|....-+.+..+. .-++|..++..+..
T Consensus 241 ~~~~~i~i~~~g~~-~~~~s~l~~l~~g~d~lf~gs~~gds~l~~~~~~~l~~~~~~~-N~~Pi~D~~v~~~~~~~~~~~ 318 (504)
T PF10433_consen 241 NDGGSISITYLGTL-CSIASSLTYLKNGGDYLFVGSEFGDSQLLQISLSNLEVLDSLP-NWGPIVDFCVVDSSNSGQPSN 318 (504)
T ss_dssp EEEEEEEEEEEEE---S-ESEEEEESTT--EEEEEESSS-EEEEEEESESEEEEEEE-----SEEEEEEE-TSSSSS---
T ss_pred ECCCeEEEEEcCCc-CChhheEEEEcCCCEEEEEEEecCCcEEEEEeCCCcEEEEecc-CcCCccceEEeccccCCCCcc
Q ss_pred ----CeEEEEE--CCCeEEEec
Q 010362 496 ----NLLATYG--EDCTMKLWK 511 (512)
Q Consensus 496 ----~~l~s~~--~dg~i~iW~ 511 (512)
++++++| .+|.+++.+
T Consensus 319 ~~~~~lv~~sG~g~~gsL~~lr 340 (504)
T PF10433_consen 319 PSSDQLVACSGAGKRGSLRILR 340 (504)
T ss_dssp ----EEEEEESSGGG-EEEEEE
T ss_pred cccceEEEEECcCCCCcEEEEe
No 457
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=94.42 E-value=0.18 Score=30.14 Aligned_cols=31 Identities=29% Similarity=0.606 Sum_probs=26.2
Q ss_pred CceEEEEECCC-C--CEEEEEeCCCeEEEEEcCC
Q 010362 214 SHAECARFSPD-G--QFLVSCSFDGFIEVWDYLS 244 (512)
Q Consensus 214 ~~v~~~~~s~~-~--~~l~sg~~dg~i~iwd~~~ 244 (512)
+.|.++.|||+ + ++|+.+-.-|.|.|+|+.+
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 46899999984 4 5899888899999999875
No 458
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=94.23 E-value=3.5 Score=37.64 Aligned_cols=141 Identities=17% Similarity=0.292 Sum_probs=83.2
Q ss_pred cEEEEeCCCCceeeecCCCCCCCCCCceeEEEEEcCCCC----Ce-EEEEcCCCcEEEEecCCeEEEEeeCCcccC----
Q 010362 371 TVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNP----DH-IVVCNKTSSIYIMTLQGQVVKSFSSGKREG---- 441 (512)
Q Consensus 371 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~----~~-l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~---- 441 (512)
+|.+||+.+++.++++..+.......+....+.+..... .+ .++-...+.+.++|+......++.......
T Consensus 35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~ 114 (287)
T PF03022_consen 35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDA 114 (287)
T ss_dssp EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SS
T ss_pred EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccc
Confidence 688899999999898888776666778888888877442 23 344445578999999855444443332111
Q ss_pred -------------CcEEEEEECC---CCCEEEEEeCCC-eEEEEEcC---CCee---------EEeccccC-CCeEEEEE
Q 010362 442 -------------GDFVAACVSP---KGEWIYCVGEDR-NLYCFSHQ---SGKL---------EHLMKVHE-KDVIGVTH 491 (512)
Q Consensus 442 -------------~~~~~~~~s~---~g~~l~~g~~dg-~i~iwd~~---~~~~---------~~~~~~h~-~~v~~v~~ 491 (512)
..+..++.+| +|++|+.+...+ .++--... +... +..+ +.. .....++.
T Consensus 115 ~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss~~ly~v~T~~L~~~~~~~~~~~~~~v~~l-G~k~~~s~g~~~ 193 (287)
T PF03022_consen 115 GPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSSRKLYRVPTSVLRDPSLSDAQALASQVQDL-GDKGSQSDGMAI 193 (287)
T ss_dssp EEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-SEEEEEEHHHHCSTT--HHH-HHHT-EEE-EE---SECEEEE
T ss_pred cceeccCceEecCCCccccccCCCCCCccEEEEEeCCCCcEEEEEHHHhhCccccccccccccceec-cccCCCCceEEE
Confidence 1245555544 666777666433 23222211 1110 1111 121 34567888
Q ss_pred cCCCCeEEEEECCCeEEEecC
Q 010362 492 HPHRNLLATYGEDCTMKLWKP 512 (512)
Q Consensus 492 ~p~~~~l~s~~~dg~i~iW~~ 512 (512)
+++|.++++--..+.|..|+|
T Consensus 194 D~~G~ly~~~~~~~aI~~w~~ 214 (287)
T PF03022_consen 194 DPNGNLYFTDVEQNAIGCWDP 214 (287)
T ss_dssp ETTTEEEEEECCCTEEEEEET
T ss_pred CCCCcEEEecCCCCeEEEEeC
Confidence 999999988889999999986
No 459
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=94.21 E-value=2.9 Score=40.12 Aligned_cols=148 Identities=11% Similarity=0.146 Sum_probs=86.1
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCceee-ecCCCCCCCCCCceeEEEEEc---CCCCCeEEEEcCCCcEEEEecC---Ce--
Q 010362 359 DGSRVVTASSDCTVKVWDLKSTDCLQ-TFKPPPPLRGGDASVNSVHLF---PKNPDHIVVCNKTSSIYIMTLQ---GQ-- 429 (512)
Q Consensus 359 ~~~~l~~~~~dg~i~iwd~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~---~~~~~~l~~~~~~~~i~~~~~~---~~-- 429 (512)
+...+++|+..|.++||+........ .+-.. .....+|..+..- +......++.-.-..+.+|.+. +.
T Consensus 36 ~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE---~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~~ 112 (418)
T PF14727_consen 36 GSDKIIVGSYSGILRIYDPSGNEFQPEDLLLE---TQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTVE 112 (418)
T ss_pred CccEEEEeccccEEEEEccCCCCCCCccEEEE---EecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCcc
Confidence 34589999999999999985433110 00000 0123456665543 3333444555667777777773 11
Q ss_pred -----EEEEeeCCcccCCcEEEEEECC----C-CCEEEEEeCCCeEEEEEcCCCeeEEeccccCCCeEEEEEcCCCCeEE
Q 010362 430 -----VVKSFSSGKREGGDFVAACVSP----K-GEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPHRNLLA 499 (512)
Q Consensus 430 -----~~~~~~~~~~~~~~~~~~~~s~----~-g~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~ 499 (512)
.+.....+.- ......+++.| . -.+|++-+.||.+.+|+-+.-.....+.. ---.-.+.+.|....|+
T Consensus 113 ~g~~~~L~~~yeh~l-~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~-~llPgPl~Y~~~tDsfv 190 (418)
T PF14727_consen 113 HGNQYQLELIYEHSL-QRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD-FLLPGPLCYCPRTDSFV 190 (418)
T ss_pred cCcEEEEEEEEEEec-ccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-CCCCcCeEEeecCCEEE
Confidence 2222222221 22233444433 2 36788889999999999776554444443 22223467888888888
Q ss_pred EEECCCeEEEec
Q 010362 500 TYGEDCTMKLWK 511 (512)
Q Consensus 500 s~~~dg~i~iW~ 511 (512)
+++.+..+.-|+
T Consensus 191 t~sss~~l~~Yk 202 (418)
T PF14727_consen 191 TASSSWTLECYK 202 (418)
T ss_pred EecCceeEEEec
Confidence 998888777654
No 460
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=94.01 E-value=0.45 Score=41.31 Aligned_cols=64 Identities=11% Similarity=0.236 Sum_probs=49.6
Q ss_pred EECCCCCEEEEEeCCCeEEEEEcCCCeeEEe-------cc-------ccCCCeEEEEEcCCCCeEEEEECCCeEEEecC
Q 010362 448 CVSPKGEWIYCVGEDRNLYCFSHQSGKLEHL-------MK-------VHEKDVIGVTHHPHRNLLATYGEDCTMKLWKP 512 (512)
Q Consensus 448 ~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~-------~~-------~h~~~v~~v~~~p~~~~l~s~~~dg~i~iW~~ 512 (512)
.+..++.++++.+.+|.+++||+.+++.+.. +. .....|..+..+.+|.-+++-+ +|..+.|++
T Consensus 17 ~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~ 94 (219)
T PF07569_consen 17 FLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSP 94 (219)
T ss_pred EEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEecc
Confidence 3556889999999999999999999875532 22 2456788999998888777765 577888874
No 461
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.90 E-value=0.95 Score=42.59 Aligned_cols=113 Identities=13% Similarity=0.262 Sum_probs=77.3
Q ss_pred EEEecCcCceEEEEECCCCCEEEEEeCCCeEEEEEcCCCeeeccccccccceeeccCcceeEEEEcCCCCeEEEEeCCCe
Q 010362 207 TIKFGTKSHAECARFSPDGQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQDGK 286 (512)
Q Consensus 207 ~~~~~h~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~ 286 (512)
++....+++|.++.||+|.+.||+--.|.+|.+++....+....... ..+..+..|....|+.+ .-+|..+..|
T Consensus 60 Sfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~----~ck~k~~~IlGF~W~~s-~e~A~i~~~G- 133 (657)
T KOG2377|consen 60 SFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQ----ECKTKNANILGFCWTSS-TEIAFITDQG- 133 (657)
T ss_pred eeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHH----HhccCcceeEEEEEecC-eeEEEEecCC-
Confidence 33446678999999999999999999999999999854443322221 12224566899999876 4566665444
Q ss_pred EEEEEccCCeeeEEeccccccCeEEEEEecCCCEEEEEe
Q 010362 287 IKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTS 325 (512)
Q Consensus 287 i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 325 (512)
+-+|-+...+...+....+...|.-..|.++.+.++.++
T Consensus 134 ~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~t 172 (657)
T KOG2377|consen 134 IEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLST 172 (657)
T ss_pred eEEEEEchhhhhhhhhhhcccCccEEEEccccceEeeec
Confidence 677766544333333347888899999999887665544
No 462
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.88 E-value=1.5 Score=42.09 Aligned_cols=78 Identities=17% Similarity=0.213 Sum_probs=52.3
Q ss_pred CeEEEEEecCCCEEEEEeCCCcEEEEeC---------CCCceeEE---e-------e-CCccceeEEEEcCCC---CEEE
Q 010362 308 GVTSLVFSRDGSQILSTSFDSTARIHGL---------KSGKLLKE---F-------R-GHSSYVNDAIFTNDG---SRVV 364 (512)
Q Consensus 308 ~i~~~~~~~~~~~l~~~~~dg~v~i~d~---------~~~~~~~~---~-------~-~~~~~v~~~~~~~~~---~~l~ 364 (512)
.|..+..++.|..++..+.+|.+.++=. +.|+.... + . ...-.+..++|+|+. ..+.
T Consensus 105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL~ 184 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHLV 184 (741)
T ss_pred EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceEE
Confidence 4677888999999999998987655431 23332211 1 1 111235677899965 5677
Q ss_pred EEeCCCcEEEEeCCCCceeee
Q 010362 365 TASSDCTVKVWDLKSTDCLQT 385 (512)
Q Consensus 365 ~~~~dg~i~iwd~~~~~~~~~ 385 (512)
.-+.|..|++||+...+.+..
T Consensus 185 iL~sdnviRiy~lS~~telyl 205 (741)
T KOG4460|consen 185 LLTSDNVIRIYSLSEPTELYL 205 (741)
T ss_pred EEecCcEEEEEecCCcchhhc
Confidence 788899999999987665533
No 463
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.86 E-value=2.2 Score=46.09 Aligned_cols=37 Identities=19% Similarity=0.268 Sum_probs=30.0
Q ss_pred ecCcCceEEEEECCCCCEEEEEeCCCeEEEEEcCCCe
Q 010362 210 FGTKSHAECARFSPDGQFLVSCSFDGFIEVWDYLSGK 246 (512)
Q Consensus 210 ~~h~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~ 246 (512)
.|-......++|+|...++|.|+.+|.|.+|-...-+
T Consensus 32 ~G~~~~~~~~afD~~q~llai~t~tg~i~~yg~~~ve 68 (993)
T KOG1983|consen 32 HGFPSTPSALAFDPTQGLLAIGTRTGAIKIYGQPGVE 68 (993)
T ss_pred cCCCCCCcceeeccccceEEEEEecccEEEecccceE
Confidence 3555567789999999999999999999999754433
No 464
>PF09398 FOP_dimer: FOP N terminal dimerisation domain; InterPro: IPR018993 Fibroblast growth factor receptor 1 (FGFR1) oncogene partner (FOP) is a centrosomal protein that is involved in anchoring microtubules to centrosomes. This domain includes a Lis-homology motif. It forms an alpha-helical bundle and is involved in dimerisation []. ; GO: 0034453 microtubule anchoring, 0005813 centrosome; PDB: 2D68_A.
Probab=93.85 E-value=0.089 Score=36.71 Aligned_cols=28 Identities=18% Similarity=0.309 Sum_probs=24.5
Q ss_pred HHHHHHHHHHhcChHHHHHHHHhhcCcc
Q 010362 10 VIKIVLQFCKENSLQQTFQTLQNECQVS 37 (512)
Q Consensus 10 ~~~li~q~L~e~G~~~t~~~l~~Es~~~ 37 (512)
++-||-.||.-+||+.|+.+|+.|||..
T Consensus 21 i~eLIrEyLef~~l~~TlsVf~~Es~~~ 48 (81)
T PF09398_consen 21 INELIREYLEFNNLDYTLSVFQPESGQP 48 (81)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHT-T
T ss_pred HHHHHHHHHHHcCCccHHHHHhhccCCC
Confidence 5789999999999999999999999995
No 465
>PRK13684 Ycf48-like protein; Provisional
Probab=93.74 E-value=6.1 Score=37.09 Aligned_cols=277 Identities=12% Similarity=0.076 Sum_probs=132.9
Q ss_pred cCcCceEEEEECCCCCEEEEEeCCCeEEEEEc-CCCeeeccccccccceeeccCcceeEEEEcCCCCeEEEEeCCCeEEE
Q 010362 211 GTKSHAECARFSPDGQFLVSCSFDGFIEVWDY-LSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQDGKIKV 289 (512)
Q Consensus 211 ~h~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~-~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~v 289 (512)
+-...+.++.|....+-+|+|. +|.| |.. +.|+.-...... +......+.++.|.++ ..+++ +..|.|
T Consensus 43 ~~~~~l~~v~F~d~~~g~avG~-~G~i--l~T~DgG~tW~~~~~~----~~~~~~~l~~v~~~~~-~~~~~-G~~g~i-- 111 (334)
T PRK13684 43 PTEANLLDIAFTDPNHGWLVGS-NRTL--LETNDGGETWEERSLD----LPEENFRLISISFKGD-EGWIV-GQPSLL-- 111 (334)
T ss_pred CCCCceEEEEEeCCCcEEEEEC-CCEE--EEEcCCCCCceECccC----CcccccceeeeEEcCC-cEEEe-CCCceE--
Confidence 3455788899986666677775 5543 332 223221111100 0012334778888654 33444 344543
Q ss_pred EEccC-CeeeEEeccc--cccCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEee-CCccceeEEEEcCCCCEEEE
Q 010362 290 WRIRS-GQCLRRLERA--HSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFR-GHSSYVNDAIFTNDGSRVVT 365 (512)
Q Consensus 290 wd~~~-~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~ 365 (512)
|...+ |+.-..+... .......+....++..+ .++..|.|..=+ +.|+.-..+. .....+.++.+.|++.++++
T Consensus 112 ~~S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~-~~g~~G~i~~S~-DgG~tW~~~~~~~~g~~~~i~~~~~g~~v~~ 189 (334)
T PRK13684 112 LHTTDGGKNWTRIPLSEKLPGSPYLITALGPGTAE-MATNVGAIYRTT-DGGKNWEALVEDAAGVVRNLRRSPDGKYVAV 189 (334)
T ss_pred EEECCCCCCCeEccCCcCCCCCceEEEEECCCcce-eeeccceEEEEC-CCCCCceeCcCCCcceEEEEEECCCCeEEEE
Confidence 32232 3322222111 11122222222223233 334455443322 2333322222 22456888999998765554
Q ss_pred EeCCCcEEEEeCCCC-ceeeecCCCCCCCCCCceeEEEEEcCCCCCeEEEEcCCCcEEEEecC-CeEEEEeeCCcc-cCC
Q 010362 366 ASSDCTVKVWDLKST-DCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQ-GQVVKSFSSGKR-EGG 442 (512)
Q Consensus 366 ~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~~~~~-~~~~~~~~~~~~-~~~ 442 (512)
+ ..|.+..- .+.+ +.-.... ......++++.+.+++ ..+++ +..|.+.+-..+ +........... ...
T Consensus 190 g-~~G~i~~s-~~~gg~tW~~~~-----~~~~~~l~~i~~~~~g-~~~~v-g~~G~~~~~s~d~G~sW~~~~~~~~~~~~ 260 (334)
T PRK13684 190 S-SRGNFYST-WEPGQTAWTPHQ-----RNSSRRLQSMGFQPDG-NLWML-ARGGQIRFNDPDDLESWSKPIIPEITNGY 260 (334)
T ss_pred e-CCceEEEE-cCCCCCeEEEee-----CCCcccceeeeEcCCC-CEEEE-ecCCEEEEccCCCCCccccccCCcccccc
Confidence 4 45654431 1122 2111111 1234578888888876 44444 445666543233 333232222111 123
Q ss_pred cEEEEEECCCCCEEEEEeCCCeEEEEEcCCCeeEEecc---ccCCCeEEEEEcCCCCeEEEEECCCeEEEecC
Q 010362 443 DFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMK---VHEKDVIGVTHHPHRNLLATYGEDCTMKLWKP 512 (512)
Q Consensus 443 ~~~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~~---~h~~~v~~v~~~p~~~~l~s~~~dg~i~iW~~ 512 (512)
.+..+.+.+++..+++ +.+|.+. .....|+--.... .-....+.+.|..++..++ .+..|.|.-|++
T Consensus 261 ~l~~v~~~~~~~~~~~-G~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~-~G~~G~il~~~~ 330 (334)
T PRK13684 261 GYLDLAYRTPGEIWAG-GGNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFV-LGQRGVLLRYVG 330 (334)
T ss_pred ceeeEEEcCCCCEEEE-cCCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEE-ECCCceEEEecC
Confidence 4677888888876554 4567654 3444444333332 1223577788876666655 567888887764
No 466
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=93.64 E-value=7.8 Score=38.02 Aligned_cols=274 Identities=14% Similarity=0.122 Sum_probs=130.9
Q ss_pred CcCceEEEEECCCCCEEEEEeCCCeEEEEEcCCCeeeccccccccceeeccCcceeEEEEcCCCCeEEEEeCCCeEEEEE
Q 010362 212 TKSHAECARFSPDGQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWR 291 (512)
Q Consensus 212 h~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~vwd 291 (512)
....|..+.+...|. +.+|+.|| +..||..+++.......+ ...+|..+.-+-.|. +..|+.+| +.+.+
T Consensus 163 ~d~~V~aLv~D~~g~-lWvgT~dG-L~~fd~~~gkalql~s~~-------~dk~I~al~~d~qg~-LWVGTdqG-v~~~e 231 (671)
T COG3292 163 KDTPVVALVFDANGR-LWVGTPDG-LSYFDAGRGKALQLASPP-------LDKAINALIADVQGR-LWVGTDQG-VYLQE 231 (671)
T ss_pred cCccceeeeeeccCc-EEEecCCc-ceEEccccceEEEcCCCc-------chhhHHHHHHHhcCc-EEEEeccc-eEEEc
Confidence 345677888888885 55577777 666777777655433221 224566665555554 66677665 77777
Q ss_pred ccCCeeeEEeccccccCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeeCC--ccceeEEEEcCCCCEEEEEeCC
Q 010362 292 IRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRGH--SSYVNDAIFTNDGSRVVTASSD 369 (512)
Q Consensus 292 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~d 369 (512)
.+..+...-...-....|..+.-..+| .+-.|+..|..+.--.+.+-.....+.| -+.|.++..+.+|. +.+++.+
T Consensus 232 ~~G~~~sn~~~~lp~~~I~ll~qD~qG-~lWiGTenGl~r~~l~rq~Lq~~~~~~~l~~S~vnsL~~D~dGs-LWv~t~~ 309 (671)
T COG3292 232 AEGWRASNWGPMLPSGNILLLVQDAQG-ELWIGTENGLWRTRLPRQGLQIPLSKMHLGVSTVNSLWLDTDGS-LWVGTYG 309 (671)
T ss_pred hhhccccccCCCCcchheeeeecccCC-CEEEeecccceeEecCCCCccccccccCCccccccceeeccCCC-EeeeccC
Confidence 655332222221123344444433334 4566776665433322222222222222 23566777777775 6667777
Q ss_pred CcEEEEeCCCCceeeecCCCCCCCCCCceeEEEEEcCCC-CCeEEEEcCCCcEEEEe-cCCeEEEEeeCCcccCCcEEEE
Q 010362 370 CTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKN-PDHIVVCNKTSSIYIMT-LQGQVVKSFSSGKREGGDFVAA 447 (512)
Q Consensus 370 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~l~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~ 447 (512)
|.+++-+-. ......+.... +.. +.-.+..|.. ...+-.....+.+.+-+ ..+..+....... +..++..
T Consensus 310 giv~~~~a~-w~~ma~in~~d---G~v--~~~~~~a~~ll~~~v~~~ns~g~L~van~stG~~v~sv~q~R--g~nit~~ 381 (671)
T COG3292 310 GIVRYLTAD-WKRMAVINDSD---GGV--SQYEAVAPALLSWGVRQLNSIGELMVANGSTGELVRSVHQLR--GMNITTT 381 (671)
T ss_pred ceEEEecch-hhheeeeecCC---Cch--hhhhccCchhcccceeeccccceEEEecCCCCcEEEEeeecc--ccccchh
Confidence 655543321 11111111110 000 0000111100 00111111111111111 1123333322222 2346666
Q ss_pred EECCCCCEEEEEeCCCeEEEEEcCC-CeeEEeccc-cCCCeEEEEEcCCCCeEEEEECCCeEE
Q 010362 448 CVSPKGEWIYCVGEDRNLYCFSHQS-GKLEHLMKV-HEKDVIGVTHHPHRNLLATYGEDCTMK 508 (512)
Q Consensus 448 ~~s~~g~~l~~g~~dg~i~iwd~~~-~~~~~~~~~-h~~~v~~v~~~p~~~~l~s~~~dg~i~ 508 (512)
++.. +..+..|+...-+.-|+-++ +.......+ ..++|..+.=.|+++ |..|+.+|.++
T Consensus 382 ~~d~-~g~lWlgs~q~GLsrl~n~n~~avlde~agl~ss~V~aived~dns-LWIGTs~Glvk 442 (671)
T COG3292 382 LEDS-RGRLWLGSMQNGLSRLDNKNEWAVLDEDAGLPSSEVSAIVEDPDNS-LWIGTSGGLVK 442 (671)
T ss_pred hhcc-CCcEEEEecccchhhhccCCcccccccccCCcccceeeeeecCCCC-EEEeccCCeEe
Confidence 6666 44566677665555666655 333333222 356788888888888 66677788665
No 467
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=93.63 E-value=4 Score=34.72 Aligned_cols=104 Identities=17% Similarity=0.166 Sum_probs=61.7
Q ss_pred CEEEEEeCCCeEEEEEcCCCeeeccccccccceeeccCcceeEEEEcCCCCeEEEEeCC---C---eEEEE---Ecc--C
Q 010362 226 QFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQD---G---KIKVW---RIR--S 294 (512)
Q Consensus 226 ~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d---g---~i~vw---d~~--~ 294 (512)
+.|+.+...+.|.+|++......... .+. .-+.|..+.++..|++|+|--.+ . .+|+| +.. .
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~------~F~-Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~ 101 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLC------TFS-TVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEE 101 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeE------EEc-chhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhccc
Confidence 44544455788999999843322111 122 34789999999999999987433 2 56665 211 1
Q ss_pred CeeeE---------------------EeccccccCeEEEEEecCCCEEEEEeCCCcEEEEeCCC
Q 010362 295 GQCLR---------------------RLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKS 337 (512)
Q Consensus 295 ~~~~~---------------------~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~i~d~~~ 337 (512)
.+.+. .++.+-..++.+++..|-...|++|+ ++.+.+|.+..
T Consensus 102 ~~~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~-~~~l~lf~l~~ 164 (215)
T PF14761_consen 102 NSPVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC-GNKLVLFTLKY 164 (215)
T ss_pred CCcEEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc-CCEEEEEEEEE
Confidence 11111 11122344677888888544566666 56788887643
No 468
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=93.61 E-value=1.3 Score=42.31 Aligned_cols=142 Identities=13% Similarity=0.175 Sum_probs=85.5
Q ss_pred CCCEEE-EEeCCCeEEEEEcCCCeeeccccccccceeeccCcceeEEEEcCCC--------CeEEEEeCCCeEEEEEccC
Q 010362 224 DGQFLV-SCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDS--------EMLASGSQDGKIKVWRIRS 294 (512)
Q Consensus 224 ~~~~l~-sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~--------~~l~s~~~dg~i~vwd~~~ 294 (512)
+..+|. .|+....++-.|++.|+.+..... |... -+.|.|+. ..|+ |-.+..|.-.|.+-
T Consensus 478 dssli~~dg~~~~kLykmDIErGkvveeW~~--------~ddv--vVqy~p~~kf~qmt~eqtlv-GlS~~svFrIDPR~ 546 (776)
T COG5167 478 DSSLIYLDGGERDKLYKMDIERGKVVEEWDL--------KDDV--VVQYNPYFKFQQMTDEQTLV-GLSDYSVFRIDPRA 546 (776)
T ss_pred CcceEEecCCCcccceeeecccceeeeEeec--------CCcc--eeecCCchhHHhcCccceEE-eecccceEEecccc
Confidence 444444 445556777778888887765543 4433 56677742 2344 33444454445432
Q ss_pred -CeeeEEec---cccccCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeeCCccceeEEEEcCCCCEEEEEeCCC
Q 010362 295 -GQCLRRLE---RAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDC 370 (512)
Q Consensus 295 -~~~~~~~~---~~~~~~i~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 370 (512)
|..+.... .......++..-. ...++++|+..|.|++||--.-.....+.+....|..+..+.+|+++++.+. .
T Consensus 547 ~gNKi~v~esKdY~tKn~Fss~~tT-esGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk-~ 624 (776)
T COG5167 547 RGNKIKVVESKDYKTKNKFSSGMTT-ESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCK-N 624 (776)
T ss_pred cCCceeeeeehhccccccccccccc-cCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeec-c
Confidence 32222211 0111222233222 3458999999999999996444444556677788999999999999887775 4
Q ss_pred cEEEEeCC
Q 010362 371 TVKVWDLK 378 (512)
Q Consensus 371 ~i~iwd~~ 378 (512)
.+.+-|++
T Consensus 625 yllL~d~~ 632 (776)
T COG5167 625 YLLLTDVP 632 (776)
T ss_pred eEEEEecc
Confidence 67777765
No 469
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=93.24 E-value=0.67 Score=40.26 Aligned_cols=73 Identities=14% Similarity=0.256 Sum_probs=51.0
Q ss_pred ECCCCCEEEEEeCCCeEEEEEcCCCeeeccc-cccccceee-------ccCcceeEEEEcCCCCeEEEEeCCCeEEEEEc
Q 010362 221 FSPDGQFLVSCSFDGFIEVWDYLSGKLKKDL-QYQADETFM-------MHDETVLCIEFSRDSEMLASGSQDGKIKVWRI 292 (512)
Q Consensus 221 ~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~-~~~~~~~~~-------~h~~~v~~l~~s~~~~~l~s~~~dg~i~vwd~ 292 (512)
+..++.+|++-+.+|.+++||+.+++..... ...+ .+. .....|..+.++.+|.-+++-+ +|....|+.
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~p--ll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~ 94 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAP--LLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSP 94 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHH--HhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEecc
Confidence 4557889999999999999999998765432 1111 111 3556788888888887776655 577888876
Q ss_pred cCCe
Q 010362 293 RSGQ 296 (512)
Q Consensus 293 ~~~~ 296 (512)
.-+.
T Consensus 95 ~L~~ 98 (219)
T PF07569_consen 95 DLGC 98 (219)
T ss_pred ccce
Confidence 5443
No 470
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=93.20 E-value=2.4 Score=37.28 Aligned_cols=148 Identities=9% Similarity=0.125 Sum_probs=78.0
Q ss_pred EEEeCCCCceeEEeeCCccceeEEEEcCCCCEEEEEeC-C--CcEEEEeCCCCceeeecCCCCCCCCCCceeEEEEEcCC
Q 010362 331 RIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASS-D--CTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPK 407 (512)
Q Consensus 331 ~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 407 (512)
.+||+.+++....-...+..+.+-.+.+||+++.+|+. + ..+++++.........+............-.+....|+
T Consensus 49 ~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~D 128 (243)
T PF07250_consen 49 VEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLPD 128 (243)
T ss_pred EEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceECCC
Confidence 47888776543322223334455567889999998875 2 34778876541111111111000112233344455566
Q ss_pred CCCeEEEEcCC-CcEEEEecCC--eEEEE--eeCC---cccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCeeEEec
Q 010362 408 NPDHIVVCNKT-SSIYIMTLQG--QVVKS--FSSG---KREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLM 479 (512)
Q Consensus 408 ~~~~l~~~~~~-~~i~~~~~~~--~~~~~--~~~~---~~~~~~~~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~ 479 (512)
+ ..+++|+.. ....+|.-.. ..... +... .....-...+...|+|+.++.+..++ .|||..+.+.++.+
T Consensus 129 G-~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~s--~i~d~~~n~v~~~l 205 (243)
T PF07250_consen 129 G-RVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRGS--IIYDYKTNTVVRTL 205 (243)
T ss_pred C-CEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCCc--EEEeCCCCeEEeeC
Confidence 6 566665555 3455555421 11111 1110 11123345677799999999988765 45688888776665
Q ss_pred cc
Q 010362 480 KV 481 (512)
Q Consensus 480 ~~ 481 (512)
..
T Consensus 206 P~ 207 (243)
T PF07250_consen 206 PD 207 (243)
T ss_pred CC
Confidence 53
No 471
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=93.16 E-value=9.1 Score=37.97 Aligned_cols=149 Identities=17% Similarity=0.193 Sum_probs=74.6
Q ss_pred eEEEE---eCCCeEEEEEccCCeeeEEeccccccCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeeCCccc---
Q 010362 277 MLASG---SQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSY--- 350 (512)
Q Consensus 277 ~l~s~---~~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~--- 350 (512)
++++. ...+...+.| .+|.....+.. .......+...++|.+++... +.+..+|+ .|+.+..+......
T Consensus 117 ~~~~~~~~~~~~~~~~iD-~~G~Vrw~~~~-~~~~~~~~~~l~nG~ll~~~~--~~~~e~D~-~G~v~~~~~l~~~~~~~ 191 (477)
T PF05935_consen 117 YFVNGNDWDSSSYTYLID-NNGDVRWYLPL-DSGSDNSFKQLPNGNLLIGSG--NRLYEIDL-LGKVIWEYDLPGGYYDF 191 (477)
T ss_dssp EEEEETT--BEEEEEEEE-TTS-EEEEE-G-GGT--SSEEE-TTS-EEEEEB--TEEEEE-T-T--EEEEEE--TTEE-B
T ss_pred EEEeCCCCCCCceEEEEC-CCccEEEEEcc-CccccceeeEcCCCCEEEecC--CceEEEcC-CCCEEEeeecCCccccc
Confidence 44444 2445677777 34665555442 111111166778888776555 78889998 57766655433221
Q ss_pred eeEEEEcCCCCEEEEEeC-------------CCcEEEEeCCCCceeeecCCCCCC---C-------------C-----CC
Q 010362 351 VNDAIFTNDGSRVVTASS-------------DCTVKVWDLKSTDCLQTFKPPPPL---R-------------G-----GD 396 (512)
Q Consensus 351 v~~~~~~~~~~~l~~~~~-------------dg~i~iwd~~~~~~~~~~~~~~~~---~-------------~-----~~ 396 (512)
-.++...|+|++|+.+.. ...|..+| .+|+.+..+....-+ . + .=
T Consensus 192 HHD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW 270 (477)
T PF05935_consen 192 HHDIDELPNGNLLILASETKYVDEDKDVDTVEDVIVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDW 270 (477)
T ss_dssp -S-EEE-TTS-EEEEEEETTEE-TS-EE---S-EEEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS
T ss_pred ccccEECCCCCEEEEEeecccccCCCCccEecCEEEEEC-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCc
Confidence 345778899999888771 12355666 666665543321111 0 0 00
Q ss_pred ceeEEEEEcCCCCCeEEEEcCCCcEEEEecCCeEE
Q 010362 397 ASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQVV 431 (512)
Q Consensus 397 ~~i~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~ 431 (512)
.-++++.+.+.+..+++++.....|...|.....+
T Consensus 271 ~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~i 305 (477)
T PF05935_consen 271 LHINSIDYDPSDDSIIVSSRHQSAVIKIDYRTGKI 305 (477)
T ss_dssp --EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-E
T ss_pred cccCccEEeCCCCeEEEEcCcceEEEEEECCCCcE
Confidence 34788999997756777776677888888654333
No 472
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=93.12 E-value=2.1 Score=43.67 Aligned_cols=119 Identities=12% Similarity=0.186 Sum_probs=77.5
Q ss_pred eEEEEECC--CCCEEEEEeCCCeEEEEEcCC-------C----ee-eccccccccceeeccCcceeEEEEc--CCCCeEE
Q 010362 216 AECARFSP--DGQFLVSCSFDGFIEVWDYLS-------G----KL-KKDLQYQADETFMMHDETVLCIEFS--RDSEMLA 279 (512)
Q Consensus 216 v~~~~~s~--~~~~l~sg~~dg~i~iwd~~~-------~----~~-~~~~~~~~~~~~~~h~~~v~~l~~s--~~~~~l~ 279 (512)
|+.+.... +...|+.+..||.|.+|.+++ . .. .......|...+. -...+++++++ ...++||
T Consensus 103 IN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlIA 181 (717)
T PF08728_consen 103 INFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLIA 181 (717)
T ss_pred eeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEEE
Confidence 44444433 567899999999999997632 0 00 0011222222233 34589999998 7888999
Q ss_pred EEeCCCeEEEEEccCC--eeeEEeccccccCeEEEEEecCC---C---EEEEEeCCCcEEEEeC
Q 010362 280 SGSQDGKIKVWRIRSG--QCLRRLERAHSEGVTSLVFSRDG---S---QILSTSFDSTARIHGL 335 (512)
Q Consensus 280 s~~~dg~i~vwd~~~~--~~~~~~~~~~~~~i~~~~~~~~~---~---~l~~~~~dg~v~i~d~ 335 (512)
+++....|.||-.... +....-...+...|-+++|.++. . .+++++-.|.+.+|++
T Consensus 182 VSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 182 VSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 9988888888866542 21111122466789999998743 2 7788899999988877
No 473
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=92.88 E-value=9.9 Score=37.05 Aligned_cols=116 Identities=13% Similarity=0.132 Sum_probs=62.6
Q ss_pred CccceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeecCCCCCCC-CCCceeEEEEEcCCC---C--CeEEEEc----
Q 010362 347 HSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLR-GGDASVNSVHLFPKN---P--DHIVVCN---- 416 (512)
Q Consensus 347 ~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~---~--~~l~~~~---- 416 (512)
.-...+.|+|.|+|+.|++--..|.|++++..++........+.... ........++++|+- . ..+.++.
T Consensus 28 GL~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt~~~ 107 (454)
T TIGR03606 28 GLNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYTYKN 107 (454)
T ss_pred CCCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEEeccC
Confidence 33457889999999766665446999999866543222111111111 136678899999874 1 2333332
Q ss_pred ------CCCcEEEEecCCe------EEEEeeCCc-ccCCcEEEEEECCCCCEEEEEeCC
Q 010362 417 ------KTSSIYIMTLQGQ------VVKSFSSGK-REGGDFVAACVSPKGEWIYCVGED 462 (512)
Q Consensus 417 ------~~~~i~~~~~~~~------~~~~~~~~~-~~~~~~~~~~~s~~g~~l~~g~~d 462 (512)
....|.-+.+... ....+.... ...+.-..+.|.|||.+.++.++.
T Consensus 108 ~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~LYVs~GD~ 166 (454)
T TIGR03606 108 GDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGKIYYTIGEQ 166 (454)
T ss_pred CCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCcEEEEECCC
Confidence 1234544544311 111121111 112234578899999876655544
No 474
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=92.85 E-value=7.4 Score=35.53 Aligned_cols=160 Identities=14% Similarity=0.229 Sum_probs=90.5
Q ss_pred eEEEEECCCCCEEEE--EeC----------CCeEEEEEcCCCeeeccccccccceeeccCcceeEEEEcCCC-----CeE
Q 010362 216 AECARFSPDGQFLVS--CSF----------DGFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDS-----EML 278 (512)
Q Consensus 216 v~~~~~s~~~~~l~s--g~~----------dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~-----~~l 278 (512)
|..+...++|++-+. |.. .-+|.+||+.+++.++.+.++.... . ..+.+..+.+.... .++
T Consensus 3 V~~v~iD~~~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~~li~~~~~p~~~~-~-~~s~lndl~VD~~~~~~~~~~a 80 (287)
T PF03022_consen 3 VQRVQIDECGRLWVLDSGRPNGLQPPKQVCPPKLVAFDLKTNQLIRRYPFPPDIA-P-PDSFLNDLVVDVRDGNCDDGFA 80 (287)
T ss_dssp EEEEEE-TTSEEEEEE-CCHSSSSTTGHTS--EEEEEETTTTCEEEEEE--CCCS---TCGGEEEEEEECTTTTS-SEEE
T ss_pred ccEEEEcCCCCEEEEeCCCcCCCCCCCCCCCcEEEEEECCCCcEEEEEECChHHc-c-cccccceEEEEccCCCCcceEE
Confidence 555666666665443 211 1379999999999888776654322 1 45678888887632 233
Q ss_pred EEE-eCCCeEEEEEccCCeeeEEeccc------------------cccCeEEEEEec---CCCEEEEEeCCCcEEEEeCC
Q 010362 279 ASG-SQDGKIKVWRIRSGQCLRRLERA------------------HSEGVTSLVFSR---DGSQILSTSFDSTARIHGLK 336 (512)
Q Consensus 279 ~s~-~~dg~i~vwd~~~~~~~~~~~~~------------------~~~~i~~~~~~~---~~~~l~~~~~dg~v~i~d~~ 336 (512)
..+ +..+-|.|+|+.+++..+..... ....+..++.+| +++.|+.+...+. ++|.+.
T Consensus 81 YItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss~-~ly~v~ 159 (287)
T PF03022_consen 81 YITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSSR-KLYRVP 159 (287)
T ss_dssp EEEETTTCEEEEEETTTTEEEEEETCGCTTS-SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-S-EEEEEE
T ss_pred EEeCCCcCcEEEEEccCCcEEEEecCCcceeccccceeccCceEecCCCccccccCCCCCCccEEEEEeCCCC-cEEEEE
Confidence 333 33468999999998865544310 112355555554 5556665554332 222221
Q ss_pred -----CCc---------eeEEeeCC-ccceeEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 010362 337 -----SGK---------LLKEFRGH-SSYVNDAIFTNDGSRVVTASSDCTVKVWDLKS 379 (512)
Q Consensus 337 -----~~~---------~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 379 (512)
... .+..+ +. .+....++.+++|..+++--..+.|..|+..+
T Consensus 160 T~~L~~~~~~~~~~~~~~v~~l-G~k~~~s~g~~~D~~G~ly~~~~~~~aI~~w~~~~ 216 (287)
T PF03022_consen 160 TSVLRDPSLSDAQALASQVQDL-GDKGSQSDGMAIDPNGNLYFTDVEQNAIGCWDPDG 216 (287)
T ss_dssp HHHHCSTT--HHH-HHHT-EEE-EE---SECEEEEETTTEEEEEECCCTEEEEEETTT
T ss_pred HHHhhCccccccccccccceec-cccCCCCceEEECCCCcEEEecCCCCeEEEEeCCC
Confidence 110 11111 22 23566788899999888888899999999886
No 475
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=92.43 E-value=2.6 Score=40.44 Aligned_cols=138 Identities=10% Similarity=0.159 Sum_probs=82.8
Q ss_pred cCCCCEEEE-EeCCCcEEEEeCCCCceeeecCCCCCCCCCCceeEEEEEcCCC------CCeEEEEcCCCcEEEEecC--
Q 010362 357 TNDGSRVVT-ASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKN------PDHIVVCNKTSSIYIMTLQ-- 427 (512)
Q Consensus 357 ~~~~~~l~~-~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~------~~~l~~~~~~~~i~~~~~~-- 427 (512)
..+.+.++. |+....++--|+..|+.+..+.... .+ -+.+.|.. +..-++|-.+..|.-.|.+
T Consensus 476 ~~dssli~~dg~~~~kLykmDIErGkvveeW~~~d-------dv-vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~ 547 (776)
T COG5167 476 DNDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKD-------DV-VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRAR 547 (776)
T ss_pred cCCcceEEecCCCcccceeeecccceeeeEeecCC-------cc-eeecCCchhHHhcCccceEEeecccceEEeccccc
Confidence 344455443 4445567777888888877776433 11 34455542 1234555566666666665
Q ss_pred CeEEEEeeCCcc-cCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCeeEEeccccCCCeEEEEEcCCCCeEEEEEC
Q 010362 428 GQVVKSFSSGKR-EGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPHRNLLATYGE 503 (512)
Q Consensus 428 ~~~~~~~~~~~~-~~~~~~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~~~ 503 (512)
|+.+.......- ......+. ......||++++..|.|++||.-.-.....+++-...|..|..+.+|.++++.+.
T Consensus 548 gNKi~v~esKdY~tKn~Fss~-~tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk 623 (776)
T COG5167 548 GNKIKVVESKDYKTKNKFSSG-MTTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCK 623 (776)
T ss_pred CCceeeeeehhcccccccccc-ccccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeec
Confidence 433332222111 11122222 2334568999999999999997655555567777888999999999987765554
No 476
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=92.33 E-value=3.5 Score=38.98 Aligned_cols=228 Identities=14% Similarity=0.130 Sum_probs=115.7
Q ss_pred CCCeEEEEeCCCeEEEEEccCCe----eeEEeccccccCeEEEEEecCCC--------EEEEEeCCCcEEEEeCCC----
Q 010362 274 DSEMLASGSQDGKIKVWRIRSGQ----CLRRLERAHSEGVTSLVFSRDGS--------QILSTSFDSTARIHGLKS---- 337 (512)
Q Consensus 274 ~~~~l~s~~~dg~i~vwd~~~~~----~~~~~~~~~~~~i~~~~~~~~~~--------~l~~~~~dg~v~i~d~~~---- 337 (512)
...+++.|..||.+.+....-.. .-..+. -.-.-++..+.|+ ..++.+.+....++|...
T Consensus 126 gqp~~alglsngqv~v~qp~~s~t~p~pg~~Fp----~g~~p~aLd~qgr~leh~~~~lalA~~~~~qf~~~~~t~~~~~ 201 (733)
T COG4590 126 GQPWFALGLSNGQVAVVQPQLSHTMPTPGREFP----PGLEPLALDEQGRLLEHPLQQLALALTAEAQFATYDNTQQIQI 201 (733)
T ss_pred CCceEEEeccCCeEEEEeccccccCCCCCccCC----CCCCccccCcccCcccchHHHhhhccchhhHHHHhhhhhhhhh
Confidence 45688899999999988643111 111111 1111122222222 233344444444444321
Q ss_pred --------CceeEEeeCCccceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeecCCCCCCCC-CCceeE-EEEEcCC
Q 010362 338 --------GKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRG-GDASVN-SVHLFPK 407 (512)
Q Consensus 338 --------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~~i~-~~~~~~~ 407 (512)
++.+..+......|..+-..|||+.+..-+. ..+.++++.+...... +......+ ....|+ ++.. -.
T Consensus 202 L~g~~t~q~e~i~~L~~~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~r-kl~~dspg~~~~~Vte~l~l-L~ 278 (733)
T COG4590 202 LRGDRTTQQEIIRLLSVPFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIR-KLVDDSPGDSRHQVTEQLYL-LS 278 (733)
T ss_pred hhcccCchhhhhhhcCCCccchHhhEECCCCCEEEEecC-CeEEEEeecccccchh-hhhhcCCCchHHHHHHHHHH-Hh
Confidence 2223334444566888889999998877665 5788888875432111 11110001 001111 1111 12
Q ss_pred CCCeEEEEcCCCcEEEE-ecCCe---EEEEeeCCcccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCeeEEeccccC
Q 010362 408 NPDHIVVCNKTSSIYIM-TLQGQ---VVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHE 483 (512)
Q Consensus 408 ~~~~l~~~~~~~~i~~~-~~~~~---~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~ 483 (512)
+..-+.+.+.||.+.-| |.+.. .........-...++..+.-..+.+-+++-+.+|++..+.....+++-.-.. -
T Consensus 279 Gg~SLLv~~~dG~vsQWFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~~-~ 357 (733)
T COG4590 279 GGFSLLVVHEDGLVSQWFDVRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFERA-Y 357 (733)
T ss_pred CceeEEEEcCCCceeeeeeeecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceehhhh-h
Confidence 33567777778877655 44421 1111111111122333333333455677778888888887655554432222 2
Q ss_pred CCeEEEEEcCCCCeEEEEECCCeEEEe
Q 010362 484 KDVIGVTHHPHRNLLATYGEDCTMKLW 510 (512)
Q Consensus 484 ~~v~~v~~~p~~~~l~s~~~dg~i~iW 510 (512)
..+.-+++||.+.++++-. .|.|+++
T Consensus 358 ~~~~~~~~Sp~~~~Ll~e~-~gki~~~ 383 (733)
T COG4590 358 QAPQLVAMSPNQAYLLSED-QGKIRLA 383 (733)
T ss_pred cCcceeeeCcccchheeec-CCceEEE
Confidence 3566789999999888653 4567665
No 477
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=92.31 E-value=12 Score=38.43 Aligned_cols=67 Identities=12% Similarity=0.037 Sum_probs=40.0
Q ss_pred cCcceeEEEEcCCCCeEEEEeCCCeEEEEEccCCeeeEEeccccccCeEEEEEecCCCEEEEEeCCCcEEEEeC
Q 010362 262 HDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGL 335 (512)
Q Consensus 262 h~~~v~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~i~d~ 335 (512)
|-..++.+.|.-++.-++..-.|. ...+....+...-...|...+|+.|.+.++....+..|.+++-
T Consensus 75 hf~~~~~~~f~~~~gDii~~~~dp-------~p~e~~~eivG~v~nGIvaa~wS~DE~~~cvvt~~r~il~~~k 141 (1243)
T COG5290 75 HFHVLTFEYFLIDEGDIIHLVNDP-------TPAELEMEIVGKVSNGIVAASWSADEKTWCVVTSTREILLFDK 141 (1243)
T ss_pred hhhhhheeeEEecCCcEEEEEcCC-------CcccchhhhhccccCceEEEeeccCCceEEEEEcCceEEEEec
Confidence 555556666655443333333332 2222223333345678899999999998887777888877763
No 478
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=92.11 E-value=15 Score=37.33 Aligned_cols=232 Identities=12% Similarity=0.156 Sum_probs=119.7
Q ss_pred EEEcCCCCeEEEEeCCCeEEEEEc-cCCeeeEEeccccccCeEEEEEecC---CCEEEEEeCCCc-EEEEeCCCC-----
Q 010362 269 IEFSRDSEMLASGSQDGKIKVWRI-RSGQCLRRLERAHSEGVTSLVFSRD---GSQILSTSFDST-ARIHGLKSG----- 338 (512)
Q Consensus 269 l~~s~~~~~l~s~~~dg~i~vwd~-~~~~~~~~~~~~~~~~i~~~~~~~~---~~~l~~~~~dg~-v~i~d~~~~----- 338 (512)
..++|+.+.+-.|=....|.-|=+ .|.+.+..+.-..+..|.|+..... .+..++|-.++. -++..+..+
T Consensus 33 ~~~s~~sn~IdiGIS~S~ISsYIi~PTPKLiwsypi~pt~iV~~~dV~~~~~~~~~~~~glt~rKk~~ll~i~~~~~~~~ 112 (670)
T PF10395_consen 33 DDFSPDSNQIDIGISGSAISSYIIKPTPKLIWSYPISPTTIVECCDVLEKSDGKKLYCVGLTERKKFKLLLIERKVGSTE 112 (670)
T ss_pred cccCCCCceEEEEeccchhhheecCCCcceeEeeccCcCceEEEEEeEecCCCcEEEEEEEeeCCeeEEEEEEccCcccc
Confidence 366777776665544445555544 4677777777666777888877543 234555534433 333333222
Q ss_pred ------c--eeEEeeCCccceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCceee--ecCCCCCCCCCCceeEEEEEcCC-
Q 010362 339 ------K--LLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQ--TFKPPPPLRGGDASVNSVHLFPK- 407 (512)
Q Consensus 339 ------~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~--~~~~~~~~~~~~~~i~~~~~~~~- 407 (512)
+ ....++ -...|..+.+.++++.+++...+|.|.+||...+.... ..... ....-+++ .|.++
T Consensus 113 ~~~~~~e~~~~~~~k-l~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~----~~~~v~ys-~fv~~~ 186 (670)
T PF10395_consen 113 DGTVNSETTNEFELK-LDDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLK----SSINVSYS-KFVNDF 186 (670)
T ss_pred ccccCccccceEEEE-cccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccc----cccceehh-hhhccc
Confidence 1 111222 35678899999999999999999999999993322111 11111 01111222 22222
Q ss_pred ----CCCeEEEEcC-C---CcEEEEec--CCeEEEEeeCCcccCCcEE--EEEECCCCCEEEEEeCCCeEEEEEcCCCee
Q 010362 408 ----NPDHIVVCNK-T---SSIYIMTL--QGQVVKSFSSGKREGGDFV--AACVSPKGEWIYCVGEDRNLYCFSHQSGKL 475 (512)
Q Consensus 408 ----~~~~l~~~~~-~---~~i~~~~~--~~~~~~~~~~~~~~~~~~~--~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~ 475 (512)
+..++++.+. + -..+++.+ .............+..... ..|+. +|....- .++.|.+|++.+-+.
T Consensus 187 ~~~~~~~~ll~v~~~~~~k~~ykL~~l~~~~~~~~El~s~~~e~~~~~~s~f~Y~-~G~LY~l--~~~~i~~ysip~f~~ 263 (670)
T PF10395_consen 187 ELENGKDLLLTVSQLSNSKLSYKLISLSNESSSIFELSSTILENFGLEDSKFCYQ-FGKLYQL--SKKTISSYSIPNFQI 263 (670)
T ss_pred ccccCCceEEEEEEcCCCcEEEEEEEeccCCcceEEeehheeccCCcccceEEEe-CCEEEEE--eCCEEEEEEcCCceE
Confidence 2244433333 2 23566666 3333333321111111122 23333 4544333 678999999988777
Q ss_pred EEecccc----C--CCeEEEEEcCCCCeEEEEECCCeEEEec
Q 010362 476 EHLMKVH----E--KDVIGVTHHPHRNLLATYGEDCTMKLWK 511 (512)
Q Consensus 476 ~~~~~~h----~--~~v~~v~~~p~~~~l~s~~~dg~i~iW~ 511 (512)
.+++.-. . ..+.++.--...+.|.+ .++.|.+.|
T Consensus 264 ~~tI~l~~ii~~~~~~~vSl~~~s~nRvLLs--~~nkIyLld 303 (670)
T PF10395_consen 264 QKTISLPSIIDKESDDLVSLKPPSPNRVLLS--VNNKIYLLD 303 (670)
T ss_pred EEEEEechhhccccccceEeecCCCCeEEEE--cCCEEEEEe
Confidence 6665432 1 23333332113344443 355677665
No 479
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=91.68 E-value=11 Score=35.07 Aligned_cols=105 Identities=10% Similarity=0.145 Sum_probs=53.3
Q ss_pred CCCeEEEEeCC-----CeEEEEEccCCeee---EEeccccccCe--EEEEEecCCCEEEEEeC-----CCcEEEEeCCCC
Q 010362 274 DSEMLASGSQD-----GKIKVWRIRSGQCL---RRLERAHSEGV--TSLVFSRDGSQILSTSF-----DSTARIHGLKSG 338 (512)
Q Consensus 274 ~~~~l~s~~~d-----g~i~vwd~~~~~~~---~~~~~~~~~~i--~~~~~~~~~~~l~~~~~-----dg~v~i~d~~~~ 338 (512)
++.+++.|+.+ ..+..+|+.+.+.. ..+. ....+. .+++. -+++..+.|+. ...+..||+.+.
T Consensus 72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~-~lp~~~~~~~~~~-~~~~iYv~GG~~~~~~~~~v~~yd~~~~ 149 (323)
T TIGR03548 72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIG-NLPFTFENGSACY-KDGTLYVGGGNRNGKPSNKSYLFNLETQ 149 (323)
T ss_pred CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcC-CCCcCccCceEEE-ECCEEEEEeCcCCCccCceEEEEcCCCC
Confidence 45667777654 35667777765531 2221 111111 12222 25666677764 246888898765
Q ss_pred ceeE--EeeCCccceeEEEEcCCCCEEEEEeCCCc----EEEEeCCCCc
Q 010362 339 KLLK--EFRGHSSYVNDAIFTNDGSRVVTASSDCT----VKVWDLKSTD 381 (512)
Q Consensus 339 ~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~dg~----i~iwd~~~~~ 381 (512)
+-.. .+.. .......+...+++..+.|+.++. +.+||..+.+
T Consensus 150 ~W~~~~~~p~-~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~ 197 (323)
T TIGR03548 150 EWFELPDFPG-EPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQ 197 (323)
T ss_pred CeeECCCCCC-CCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCe
Confidence 4322 1211 111222223345667777776542 4678887754
No 480
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=91.64 E-value=1.1 Score=26.71 Aligned_cols=40 Identities=18% Similarity=0.280 Sum_probs=28.9
Q ss_pred CCCCEEEEEe-CCCeEEEEEcCCCeeEEeccccCCCeEEEEE
Q 010362 451 PKGEWIYCVG-EDRNLYCFSHQSGKLEHLMKVHEKDVIGVTH 491 (512)
Q Consensus 451 ~~g~~l~~g~-~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~ 491 (512)
|++++|+++. .++.|.++|..+++.+..+... .....++|
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg-~~P~~i~~ 41 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVG-GYPFGVAV 41 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECC-CCCceEEe
Confidence 5788787766 5789999999999888777653 33334444
No 481
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=91.49 E-value=15 Score=35.92 Aligned_cols=115 Identities=17% Similarity=0.156 Sum_probs=63.5
Q ss_pred cCcCceEEEEECCCCCEEEEEeCCCeEEEEEcCCCeeeccccccccceee-ccCcceeEEEEcCCC------CeEEEEe-
Q 010362 211 GTKSHAECARFSPDGQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFM-MHDETVLCIEFSRDS------EMLASGS- 282 (512)
Q Consensus 211 ~h~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~s~~~------~~l~s~~- 282 (512)
..-...+.++|.|||++|++--..|.|++++-.++......... .... ........|+++|+- .+|....
T Consensus 27 ~GL~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~--~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt 104 (454)
T TIGR03606 27 SGLNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLP--EIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYT 104 (454)
T ss_pred CCCCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCC--ceeccCCCCceeeEEECCCccccCCCcEEEEEEe
Confidence 44556789999999988877665799999986554322111111 1111 135778999999873 2344332
Q ss_pred ---------CCCeEEEEEccCC-------eee-EEeccccccCeEEEEEecCCCEEEEEeCC
Q 010362 283 ---------QDGKIKVWRIRSG-------QCL-RRLERAHSEGVTSLVFSRDGSQILSTSFD 327 (512)
Q Consensus 283 ---------~dg~i~vwd~~~~-------~~~-~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 327 (512)
....|.-|.+... +.+ ..+.......-..|.|.|||.+.++.+..
T Consensus 105 ~~~~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~LYVs~GD~ 166 (454)
T TIGR03606 105 YKNGDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGKIYYTIGEQ 166 (454)
T ss_pred ccCCCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCcEEEEECCC
Confidence 1223444554321 111 11111112234578899999866655543
No 482
>PLN02153 epithiospecifier protein
Probab=91.45 E-value=13 Score=35.12 Aligned_cols=111 Identities=9% Similarity=0.036 Sum_probs=52.4
Q ss_pred CCCEEEEEeCC-------CeEEEEEcCCCeeeccccccccceeeccCcceeEEEEcCCCCeEEEEeCC-----CeEEEEE
Q 010362 224 DGQFLVSCSFD-------GFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQD-----GKIKVWR 291 (512)
Q Consensus 224 ~~~~l~sg~~d-------g~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d-----g~i~vwd 291 (512)
++.+++.|+.+ ..+.+||..+.+-............ .......+++ ++++++.|+.+ ..+.+||
T Consensus 32 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~--~~~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd 107 (341)
T PLN02153 32 GDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRI--SCLGVRMVAV--GTKLYIFGGRDEKREFSDFYSYD 107 (341)
T ss_pred CCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCC--ccCceEEEEE--CCEEEEECCCCCCCccCcEEEEE
Confidence 45666667653 2577888877643321110000000 0001222222 46677777653 3577888
Q ss_pred ccCCeeeEEecc-----ccccCeEEEEEecCCCEEEEEeCC-----------CcEEEEeCCCCc
Q 010362 292 IRSGQCLRRLER-----AHSEGVTSLVFSRDGSQILSTSFD-----------STARIHGLKSGK 339 (512)
Q Consensus 292 ~~~~~~~~~~~~-----~~~~~i~~~~~~~~~~~l~~~~~d-----------g~v~i~d~~~~~ 339 (512)
+.+.+-...-.. .....-.+++ .-+++.++.|+.+ ..+.+||..+.+
T Consensus 108 ~~t~~W~~~~~~~~~~~p~~R~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~ 170 (341)
T PLN02153 108 TVKNEWTFLTKLDEEGGPEARTFHSMA-SDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGK 170 (341)
T ss_pred CCCCEEEEeccCCCCCCCCCceeeEEE-EECCEEEEECCccCCCccCCCcccceEEEEECCCCe
Confidence 877653221110 0111111222 2356666777653 247788887654
No 483
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=91.28 E-value=19 Score=36.73 Aligned_cols=220 Identities=15% Similarity=0.215 Sum_probs=112.4
Q ss_pred cccceEEEecCcCceEEEEECCC---CCEEEEEeCCCe-EEEEEcCCCee---ecccccc--ccceeeccCcceeEEEEc
Q 010362 202 TTLSHTIKFGTKSHAECARFSPD---GQFLVSCSFDGF-IEVWDYLSGKL---KKDLQYQ--ADETFMMHDETVLCIEFS 272 (512)
Q Consensus 202 ~~~~~~~~~~h~~~v~~~~~s~~---~~~l~sg~~dg~-i~iwd~~~~~~---~~~~~~~--~~~~~~~h~~~v~~l~~s 272 (512)
++.........+..|.|+..-.. ..+.++|-.++. -++-.+..+.. ....... ....+. -...|..+.+.
T Consensus 60 PKLiwsypi~pt~iV~~~dV~~~~~~~~~~~~glt~rKk~~ll~i~~~~~~~~~~~~~~e~~~~~~~k-l~~kvv~Ik~~ 138 (670)
T PF10395_consen 60 PKLIWSYPISPTTIVECCDVLEKSDGKKLYCVGLTERKKFKLLLIERKVGSTEDGTVNSETTNEFELK-LDDKVVGIKFS 138 (670)
T ss_pred cceeEeeccCcCceEEEEEeEecCCCcEEEEEEEeeCCeeEEEEEEccCccccccccCccccceEEEE-cccceEEEEEe
Confidence 34555666677777888876443 235555534433 34443333200 0000000 011121 46789999999
Q ss_pred CCCCeEEEEeCCCeEEEEEccCCee--eEEeccccccCeEEEEEec------CCCEEEEEeC-CC---cEEEEeC-CCCc
Q 010362 273 RDSEMLASGSQDGKIKVWRIRSGQC--LRRLERAHSEGVTSLVFSR------DGSQILSTSF-DS---TARIHGL-KSGK 339 (512)
Q Consensus 273 ~~~~~l~s~~~dg~i~vwd~~~~~~--~~~~~~~~~~~i~~~~~~~------~~~~l~~~~~-dg---~v~i~d~-~~~~ 339 (512)
++++.+++...+|.|.+||...+.. +......+...+.--.|-+ ...++++.+. ++ ..+++.+ .+..
T Consensus 139 ~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys~fv~~~~~~~~~~~ll~v~~~~~~k~~ykL~~l~~~~~ 218 (670)
T PF10395_consen 139 SDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYSKFVNDFELENGKDLLLTVSQLSNSKLSYKLISLSNESS 218 (670)
T ss_pred cCCCEEEEEEcCCcEEEEeccccccccccccccccccceehhhhhcccccccCCceEEEEEEcCCCcEEEEEEEeccCCc
Confidence 9999999999999999999933322 1122222222221112222 1234444443 22 4566766 1222
Q ss_pred eeEEee---CCccceeEEEEcC-CCCEEEEEeCCCcEEEEeCCCCceeeecCCCCCCCCCCceeEEEEEcCCCCCeEEEE
Q 010362 340 LLKEFR---GHSSYVNDAIFTN-DGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVC 415 (512)
Q Consensus 340 ~~~~~~---~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~ 415 (512)
.+..+. .+........|.- +|...-- .+++|.+|++...+...++..+.-+......+.++ .|-.++.++.
T Consensus 219 ~~~El~s~~~e~~~~~~s~f~Y~~G~LY~l--~~~~i~~ysip~f~~~~tI~l~~ii~~~~~~~vSl--~~~s~nRvLL- 293 (670)
T PF10395_consen 219 SIFELSSTILENFGLEDSKFCYQFGKLYQL--SKKTISSYSIPNFQIQKTISLPSIIDKESDDLVSL--KPPSPNRVLL- 293 (670)
T ss_pred ceEEeehheeccCCcccceEEEeCCEEEEE--eCCEEEEEEcCCceEEEEEEechhhccccccceEe--ecCCCCeEEE-
Confidence 233332 1222223333332 4543332 67799999999888777777664333322233333 3333344443
Q ss_pred cCCCcEEEEecC
Q 010362 416 NKTSSIYIMTLQ 427 (512)
Q Consensus 416 ~~~~~i~~~~~~ 427 (512)
+.+..|++.|+.
T Consensus 294 s~~nkIyLld~~ 305 (670)
T PF10395_consen 294 SVNNKIYLLDLK 305 (670)
T ss_pred EcCCEEEEEeeh
Confidence 346688999886
No 484
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=91.09 E-value=2.9 Score=40.27 Aligned_cols=69 Identities=14% Similarity=0.207 Sum_probs=47.2
Q ss_pred cEEEEEECCCCCEEEEEeCCCeEEEEE---------cCCCeeEEe---c--------cccCCCeEEEEEcCCC---CeEE
Q 010362 443 DFVAACVSPKGEWIYCVGEDRNLYCFS---------HQSGKLEHL---M--------KVHEKDVIGVTHHPHR---NLLA 499 (512)
Q Consensus 443 ~~~~~~~s~~g~~l~~g~~dg~i~iwd---------~~~~~~~~~---~--------~~h~~~v~~v~~~p~~---~~l~ 499 (512)
.+..+..++.|..++-.|.+|.+.++= +++|+..-. + ....-.+..++|||+. ..+.
T Consensus 105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL~ 184 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHLV 184 (741)
T ss_pred EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceEE
Confidence 456778899999999999999766543 223432211 1 1112246688999975 5777
Q ss_pred EEECCCeEEEec
Q 010362 500 TYGEDCTMKLWK 511 (512)
Q Consensus 500 s~~~dg~i~iW~ 511 (512)
.-+.|.+||+|+
T Consensus 185 iL~sdnviRiy~ 196 (741)
T KOG4460|consen 185 LLTSDNVIRIYS 196 (741)
T ss_pred EEecCcEEEEEe
Confidence 788899999997
No 485
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=90.91 E-value=5.4 Score=40.64 Aligned_cols=46 Identities=20% Similarity=0.135 Sum_probs=34.5
Q ss_pred cccCccccceEEEecCcCceEEEEECCCCCEEEEEeCCCeEEEEEc
Q 010362 197 EDMYPTTLSHTIKFGTKSHAECARFSPDGQFLVSCSFDGFIEVWDY 242 (512)
Q Consensus 197 ~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~ 242 (512)
.+..|......+-..-.+.|...+||.|.+.++....+..|.+++-
T Consensus 96 ~dp~p~e~~~eivG~v~nGIvaa~wS~DE~~~cvvt~~r~il~~~k 141 (1243)
T COG5290 96 NDPTPAELEMEIVGKVSNGIVAASWSADEKTWCVVTSTREILLFDK 141 (1243)
T ss_pred cCCCcccchhhhhccccCceEEEeeccCCceEEEEEcCceEEEEec
Confidence 3444555555565556778999999999998888888888988873
No 486
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=90.88 E-value=6.4 Score=30.67 Aligned_cols=120 Identities=7% Similarity=0.034 Sum_probs=62.6
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEeCCCCceeee-cCCCCCCCCCCceeEEEEEcC---CCCCeEEEEcCCCcEEEEecCCe
Q 010362 354 AIFTNDGSRVVTASSDCTVKVWDLKSTDCLQT-FKPPPPLRGGDASVNSVHLFP---KNPDHIVVCNKTSSIYIMTLQGQ 429 (512)
Q Consensus 354 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~---~~~~~l~~~~~~~~i~~~~~~~~ 429 (512)
-.|......|++++.-|+|.|++......... .............|++++-.+ ....-++.-+....+..||...+
T Consensus 4 GkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt~t~llaYDV~~N 83 (136)
T PF14781_consen 4 GKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGTQTSLLAYDVENN 83 (136)
T ss_pred EEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEeccceEEEEEcccC
Confidence 35655666788888889999998764432111 111111112345666665544 33333444445567888998855
Q ss_pred EEEEeeCCcccCCcEEEEEE---CCCCCEEEEEeCCCeEEEEEcCCCeeE
Q 010362 430 VVKSFSSGKREGGDFVAACV---SPKGEWIYCVGEDRNLYCFSHQSGKLE 476 (512)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~---s~~g~~l~~g~~dg~i~iwd~~~~~~~ 476 (512)
.-.-+.... ..+.++.+ .....-++..+.+..|.-||....+..
T Consensus 84 ~d~Fyke~~---DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~f 130 (136)
T PF14781_consen 84 SDLFYKEVP---DGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEIF 130 (136)
T ss_pred chhhhhhCc---cceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEEE
Confidence 433333322 12444444 332233444444667777776544443
No 487
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=90.77 E-value=1.9 Score=35.88 Aligned_cols=30 Identities=17% Similarity=0.324 Sum_probs=24.7
Q ss_pred ceeEEEEcCCC------CeEEEEeCCCeEEEEEccC
Q 010362 265 TVLCIEFSRDS------EMLASGSQDGKIKVWRIRS 294 (512)
Q Consensus 265 ~v~~l~~s~~~------~~l~s~~~dg~i~vwd~~~ 294 (512)
.|..++|||.| -+|++.+.+|.|.||....
T Consensus 87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 78999999943 4688889999999998653
No 488
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.76 E-value=23 Score=37.55 Aligned_cols=75 Identities=13% Similarity=0.162 Sum_probs=46.8
Q ss_pred EECCCCCEEEEEeCCCeEEEEEcCCCeeeccccc-----cccceeeccCcceeEEEEcCCCCeEEEEeCCCeEEEEEccC
Q 010362 220 RFSPDGQFLVSCSFDGFIEVWDYLSGKLKKDLQY-----QADETFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWRIRS 294 (512)
Q Consensus 220 ~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~-----~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~vwd~~~ 294 (512)
++..-|+.+..|+.||.+.+|.+........... .....+ +..+|..+...+.-..+.+- .|+.|.++++.+
T Consensus 21 ~va~~~~~l~vGt~~G~L~lY~i~~~~~~~~~~~~~~~~~~~~~~--~kk~i~~l~~~~~~~~ll~l-~dsqi~~~~l~~ 97 (877)
T KOG2063|consen 21 CVAAYGNHLYVGTRDGDLYLYSIYERGNPESVELVTETVKFEKEF--SKKPINKLLVCASLELLLIL-SDSQIAVHKLPE 97 (877)
T ss_pred HHHHhCCEEEEEcCCCcEEEEeccccccccchhhhcchhHHhhhh--ccchhHHHhhcchhcchhee-cCCcceeeecCc
Confidence 3445688999999999999999866532221111 000111 35677777777655555444 477788888876
Q ss_pred Cee
Q 010362 295 GQC 297 (512)
Q Consensus 295 ~~~ 297 (512)
-+.
T Consensus 98 ~~~ 100 (877)
T KOG2063|consen 98 LEP 100 (877)
T ss_pred ccc
Confidence 654
No 489
>PF09862 DUF2089: Protein of unknown function (DUF2089); InterPro: IPR018658 This family consists of various hypothetical prokaryotic proteins.
Probab=90.69 E-value=0.61 Score=34.98 Aligned_cols=78 Identities=19% Similarity=0.362 Sum_probs=52.8
Q ss_pred cchhhHHHHHHHHHHhcChHHHHHHHHhhcCccccccccHHHHHhhhccCCchhhhhhhccccCChhHHHHHHHHHHHHH
Q 010362 5 IEARDVIKIVLQFCKENSLQQTFQTLQNECQVSLNTVDSIETFVADINSGRWDAILPQVAQLKLPRNKLEDLYEQIVLEM 84 (512)
Q Consensus 5 ~~~~e~~~li~q~L~e~G~~~t~~~l~~Es~~~~~~~~~~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~l~~~~~~e~ 84 (512)
.+.+|+ ..|.+|++..| +.+-+++|-|+++.+ +.. +.|++++.|.... .++......+...++.
T Consensus 34 L~~E~~-~Fi~~Fi~~rG---nlKe~e~~lgiSYPT---vR~--------rLd~ii~~lg~~~-~~~~~~~~~~~~IL~~ 97 (113)
T PF09862_consen 34 LSPEQL-EFIKLFIKNRG---NLKEMEKELGISYPT---VRN--------RLDKIIEKLGYEE-DEEEEEEDERKEILDK 97 (113)
T ss_pred CCHHHH-HHHHHHHHhcC---CHHHHHHHHCCCcHH---HHH--------HHHHHHHHhCCCC-CcccccchhHHHHHHH
Confidence 344444 56788999999 899999999998765 432 2345555555421 1233445667888899
Q ss_pred HHcCCh--HHHHHHHH
Q 010362 85 IELREL--DTARAILR 98 (512)
Q Consensus 85 l~~~~~--~~a~~~lr 98 (512)
|+.++. ++|.+.||
T Consensus 98 L~~GeIs~eeA~~~Lk 113 (113)
T PF09862_consen 98 LEKGEISVEEALEILK 113 (113)
T ss_pred HHcCCCCHHHHHHHhC
Confidence 999988 77877764
No 490
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=90.54 E-value=9.7 Score=32.19 Aligned_cols=104 Identities=17% Similarity=0.099 Sum_probs=60.2
Q ss_pred CCCeEEEEeC--CCeEEEEEccCCeeeEEeccccccCeEEEEEecCCCEEEEE-eCCCcEEEEeCCCCceeEEeeCCccc
Q 010362 274 DSEMLASGSQ--DGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILST-SFDSTARIHGLKSGKLLKEFRGHSSY 350 (512)
Q Consensus 274 ~~~~l~s~~~--dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~v~i~d~~~~~~~~~~~~~~~~ 350 (512)
+|.++.+.+. ...|++||+.+|+.+.+.... ...+..=-...-++++..- -.+|.-..+|.++-+++..+.- .+.
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~-~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y-~Ge 132 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLA-PDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFSY-EGE 132 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecC-CccccccceeeccceEEEEEeccceeEEEChHHhhhhccccc-CCc
Confidence 4456666554 347999999999887665422 1122111111123344333 3477788899888887776652 233
Q ss_pred eeEEEEcCCCCEEEEEeCCCcEEEEeCCCCc
Q 010362 351 VNDAIFTNDGSRVVTASSDCTVKVWDLKSTD 381 (512)
Q Consensus 351 v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 381 (512)
-..++. |+..|+.++...+++.-|.++..
T Consensus 133 GWgLt~--d~~~LimsdGsatL~frdP~tfa 161 (262)
T COG3823 133 GWGLTS--DDKNLIMSDGSATLQFRDPKTFA 161 (262)
T ss_pred ceeeec--CCcceEeeCCceEEEecCHHHhh
Confidence 344443 45557766666677777766543
No 491
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=90.28 E-value=0.52 Score=48.11 Aligned_cols=111 Identities=15% Similarity=0.240 Sum_probs=68.0
Q ss_pred ECCCCCEEEEEeCCCeEEEEEcCCCeeeccccccccceeeccCcceeEEE-----------EcCCCCeEEEEeCCCeEEE
Q 010362 221 FSPDGQFLVSCSFDGFIEVWDYLSGKLKKDLQYQADETFMMHDETVLCIE-----------FSRDSEMLASGSQDGKIKV 289 (512)
Q Consensus 221 ~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~-----------~s~~~~~l~s~~~dg~i~v 289 (512)
|-++.-++..+-.+|+|++.++++... ..+.+|...+..++ .||||+.+|.++.||.++.
T Consensus 191 ~~~~~~~ic~~~~~~~i~lL~~~ra~~---------~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f 261 (1283)
T KOG1916|consen 191 IAVNKVYICYGLKGGEIRLLNINRALR---------SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGF 261 (1283)
T ss_pred cccccceeeeccCCCceeEeeechHHH---------HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccce
Confidence 334667788888899999887765432 12334666665554 5899999999999999988
Q ss_pred EEcc-CC----eeeEEeccccc-cCeEEEEEecCC---------CEEEEEeC-CCcEEEEeCCCCcee
Q 010362 290 WRIR-SG----QCLRRLERAHS-EGVTSLVFSRDG---------SQILSTSF-DSTARIHGLKSGKLL 341 (512)
Q Consensus 290 wd~~-~~----~~~~~~~~~~~-~~i~~~~~~~~~---------~~l~~~~~-dg~v~i~d~~~~~~~ 341 (512)
|.+. +| .++...+ .|. .+-.|.-|+.+. .++++++. +..+++|.....++.
T Consensus 262 ~Qiyi~g~~~~rclhewk-phd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl 328 (1283)
T KOG1916|consen 262 YQIYITGKIVHRCLHEWK-PHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL 328 (1283)
T ss_pred eeeeeeccccHhhhhccC-CCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhh
Confidence 8763 23 3344444 444 333333344321 13344433 456888887666665
No 492
>COG3877 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.86 E-value=1.5 Score=31.78 Aligned_cols=79 Identities=14% Similarity=0.262 Sum_probs=54.8
Q ss_pred cchhhHHHHHHHHHHhcChHHHHHHHHhhcCccccccccHHHHHhhhccCCchhhhhhhccccCChhHHHHHHHHHHHHH
Q 010362 5 IEARDVIKIVLQFCKENSLQQTFQTLQNECQVSLNTVDSIETFVADINSGRWDAILPQVAQLKLPRNKLEDLYEQIVLEM 84 (512)
Q Consensus 5 ~~~~e~~~li~q~L~e~G~~~t~~~l~~Es~~~~~~~~~~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~l~~~~~~e~ 84 (512)
.+++++-++++ ||+--| ..+-.++|.|+.+.. +. ++.|++++.+..-.. .+...++-+.+.+..
T Consensus 42 Lt~d~LeFv~l-f~r~RG---nlKEvEr~lg~sYpt---vR--------~kld~vlramgy~p~-~e~~~~i~~~~i~~q 105 (122)
T COG3877 42 LTSDQLEFVEL-FLRCRG---NLKEVERELGISYPT---VR--------TKLDEVLRAMGYNPD-SENSVNIGKKKIIDQ 105 (122)
T ss_pred cCHhHhHHHHH-HHHHcc---CHHHHHHHHCCccHH---HH--------HHHHHHHHHcCCCCC-CCChhhhhHHHHHHH
Confidence 35566655554 677766 677789999997643 33 455677776665443 344567888888999
Q ss_pred HHcCCh--HHHHHHHHh
Q 010362 85 IELREL--DTARAILRQ 99 (512)
Q Consensus 85 l~~~~~--~~a~~~lr~ 99 (512)
|+.++. ++|+..|++
T Consensus 106 le~Gei~peeA~~~L~k 122 (122)
T COG3877 106 LEKGEISPEEAIKMLNK 122 (122)
T ss_pred HHcCCCCHHHHHHHhcC
Confidence 999998 778877763
No 493
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=89.84 E-value=12 Score=33.10 Aligned_cols=142 Identities=15% Similarity=0.187 Sum_probs=77.3
Q ss_pred EEEEEcCCCeeeccccccccceeeccCcceeEEEEcCCCCeEEEEeC-C--CeEEEEEccC--Cee-eEEec--cccccC
Q 010362 237 IEVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQ-D--GKIKVWRIRS--GQC-LRRLE--RAHSEG 308 (512)
Q Consensus 237 i~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~-d--g~i~vwd~~~--~~~-~~~~~--~~~~~~ 308 (512)
-.+||..+++... +... ...-..+=++-+||++|.+|+. + ..+++++..+ +.+ ..... ......
T Consensus 48 s~~yD~~tn~~rp-l~v~-------td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RW 119 (243)
T PF07250_consen 48 SVEYDPNTNTFRP-LTVQ-------TDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRW 119 (243)
T ss_pred EEEEecCCCcEEe-ccCC-------CCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCc
Confidence 4578887766432 1111 2222333357789999999875 2 3578887644 111 11100 022333
Q ss_pred eEEEEEecCCCEEEEEeCCCc-EEEEeCCCC-ceeEE--eeC------CccceeEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 010362 309 VTSLVFSRDGSQILSTSFDST-ARIHGLKSG-KLLKE--FRG------HSSYVNDAIFTNDGSRVVTASSDCTVKVWDLK 378 (512)
Q Consensus 309 i~~~~~~~~~~~l~~~~~dg~-v~i~d~~~~-~~~~~--~~~------~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 378 (512)
--+..-.|||+.|+.|+.+.. .-+|.-... ..... +-. ...---.+...|+|+.++.+..+. .|||..
T Consensus 120 YpT~~~L~DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~s--~i~d~~ 197 (243)
T PF07250_consen 120 YPTATTLPDGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRGS--IIYDYK 197 (243)
T ss_pred cccceECCCCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCCc--EEEeCC
Confidence 445555679999999987753 344443211 11111 110 111122456689999998888654 567888
Q ss_pred CCceeeecCC
Q 010362 379 STDCLQTFKP 388 (512)
Q Consensus 379 ~~~~~~~~~~ 388 (512)
+.+.+..++.
T Consensus 198 ~n~v~~~lP~ 207 (243)
T PF07250_consen 198 TNTVVRTLPD 207 (243)
T ss_pred CCeEEeeCCC
Confidence 8876666653
No 494
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=89.83 E-value=2 Score=35.79 Aligned_cols=28 Identities=25% Similarity=0.467 Sum_probs=24.2
Q ss_pred CeEEEEEcCCC------CeEEEEECCCeEEEecC
Q 010362 485 DVIGVTHHPHR------NLLATYGEDCTMKLWKP 512 (512)
Q Consensus 485 ~v~~v~~~p~~------~~l~s~~~dg~i~iW~~ 512 (512)
.|.+++|||.| .+||+.+.+|.|.||.+
T Consensus 87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~ 120 (173)
T PF12657_consen 87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGP 120 (173)
T ss_pred cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEec
Confidence 68899999954 48999999999999975
No 495
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=89.81 E-value=17 Score=35.88 Aligned_cols=233 Identities=11% Similarity=0.102 Sum_probs=112.0
Q ss_pred cCcceeEEEEcCCCCeEEEEeCCCeEEEEEccCCeeeEEeccccccCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCcee
Q 010362 262 HDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLL 341 (512)
Q Consensus 262 h~~~v~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~ 341 (512)
...+|..+.+..+|. +..|+.|| +..||..+++.+..-......+|..+.-+-.| .+.+|+.+| +++.+.+..+..
T Consensus 163 ~d~~V~aLv~D~~g~-lWvgT~dG-L~~fd~~~gkalql~s~~~dk~I~al~~d~qg-~LWVGTdqG-v~~~e~~G~~~s 238 (671)
T COG3292 163 KDTPVVALVFDANGR-LWVGTPDG-LSYFDAGRGKALQLASPPLDKAINALIADVQG-RLWVGTDQG-VYLQEAEGWRAS 238 (671)
T ss_pred cCccceeeeeeccCc-EEEecCCc-ceEEccccceEEEcCCCcchhhHHHHHHHhcC-cEEEEeccc-eEEEchhhcccc
Confidence 456788888888775 55677776 77788888887766654444667766666555 467777555 677776552222
Q ss_pred EEeeC-CccceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeecCCCCCCCCCCceeEEEEEcCCCCCeEEEEcCCCc
Q 010362 342 KEFRG-HSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSS 420 (512)
Q Consensus 342 ~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~ 420 (512)
.-... ....|..+.-..+| .+..|+.+|..+. ....... .+...+. .-..+.+.++... ...-+-+++.++.
T Consensus 239 n~~~~lp~~~I~ll~qD~qG-~lWiGTenGl~r~-~l~rq~L--q~~~~~~-~l~~S~vnsL~~D--~dGsLWv~t~~gi 311 (671)
T COG3292 239 NWGPMLPSGNILLLVQDAQG-ELWIGTENGLWRT-RLPRQGL--QIPLSKM-HLGVSTVNSLWLD--TDGSLWVGTYGGI 311 (671)
T ss_pred ccCCCCcchheeeeecccCC-CEEEeecccceeE-ecCCCCc--ccccccc-CCccccccceeec--cCCCEeeeccCce
Confidence 21111 23345444444444 4666776664432 2222111 1111110 0112233433333 3345666666666
Q ss_pred EEEEecCCeEEEEeeCCcccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCeeEEec-cccCCCeEEEEEcCCCCeEE
Q 010362 421 IYIMTLQGQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLM-KVHEKDVIGVTHHPHRNLLA 499 (512)
Q Consensus 421 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~-~~h~~~v~~v~~~p~~~~l~ 499 (512)
+++-+.+-.....+.............+..-.+..+.....-|.+.+-+-.+|..+... ......|+.+++..++.+.+
T Consensus 312 v~~~~a~w~~ma~in~~dG~v~~~~~~a~~ll~~~v~~~ns~g~L~van~stG~~v~sv~q~Rg~nit~~~~d~~g~lWl 391 (671)
T COG3292 312 VRYLTADWKRMAVINDSDGGVSQYEAVAPALLSWGVRQLNSIGELMVANGSTGELVRSVHQLRGMNITTTLEDSRGRLWL 391 (671)
T ss_pred EEEecchhhheeeeecCCCchhhhhccCchhcccceeeccccceEEEecCCCCcEEEEeeeccccccchhhhccCCcEEE
Confidence 66554442222222221111111111111112333333334444555555556555442 22234566666666555444
Q ss_pred EEECCC
Q 010362 500 TYGEDC 505 (512)
Q Consensus 500 s~~~dg 505 (512)
..-.+|
T Consensus 392 gs~q~G 397 (671)
T COG3292 392 GSMQNG 397 (671)
T ss_pred Eecccc
Confidence 333334
No 496
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=89.81 E-value=8.5 Score=37.58 Aligned_cols=28 Identities=29% Similarity=0.619 Sum_probs=20.2
Q ss_pred CCeEEEEEcCCCCeEEEEECCCeEEEec
Q 010362 484 KDVIGVTHHPHRNLLATYGEDCTMKLWK 511 (512)
Q Consensus 484 ~~v~~v~~~p~~~~l~s~~~dg~i~iW~ 511 (512)
..|.+++..+..+.+++.+.+|.|.+|+
T Consensus 190 ~~I~~v~~d~~r~~ly~l~~~~~Iq~w~ 217 (422)
T PF08801_consen 190 PKIVQVAVDPSRRLLYTLTSDGSIQVWD 217 (422)
T ss_dssp --EEEEEEETTTTEEEEEESSE-EEEEE
T ss_pred hceeeEEecCCcCEEEEEeCCCcEEEEE
Confidence 3477788877778888888888888886
No 497
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=89.34 E-value=21 Score=34.23 Aligned_cols=223 Identities=12% Similarity=0.061 Sum_probs=0.0
Q ss_pred eEEEEeCCCeEEEEEcc--CCeeeEEeccccccCeEEEEEecCCCEEEEEeCCC-----------cEEEEeCCCCceeEE
Q 010362 277 MLASGSQDGKIKVWRIR--SGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDS-----------TARIHGLKSGKLLKE 343 (512)
Q Consensus 277 ~l~s~~~dg~i~vwd~~--~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg-----------~v~i~d~~~~~~~~~ 343 (512)
+++.|..+..+.++|+. +++....-..............-++...+.|+.+. .+..||..+.+-...
T Consensus 42 yv~gG~~~~~~~~~d~~~~~~~W~~l~~~p~~~r~~~~~v~~~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n~W~~~ 121 (376)
T PRK14131 42 YVGLGSAGTSWYKLDLNAPSKGWTKIAAFPGGPREQAVAAFIDGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNSWQKL 121 (376)
T ss_pred EEEeCCCCCeEEEEECCCCCCCeEECCcCCCCCcccceEEEECCEEEEEcCCCCCCCCCceeEcccEEEEeCCCCEEEeC
Q ss_pred ee-CCccceeEEEEc-CCCCEEEEEeCC---------------------------------------CcEEEEeCCCCce
Q 010362 344 FR-GHSSYVNDAIFT-NDGSRVVTASSD---------------------------------------CTVKVWDLKSTDC 382 (512)
Q Consensus 344 ~~-~~~~~v~~~~~~-~~~~~l~~~~~d---------------------------------------g~i~iwd~~~~~~ 382 (512)
-. .....-...+.. -+++..+.|+.+ ..+.+||..+.+-
T Consensus 122 ~~~~p~~~~~~~~~~~~~~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~YD~~t~~W 201 (376)
T PRK14131 122 DTRSPVGLAGHVAVSLHNGKAYITGGVNKNIFDGYFEDLAAAGKDKTPKDKINDAYFDKKPEDYFFNKEVLSYDPSTNQW 201 (376)
T ss_pred CCCCCCcccceEEEEeeCCEEEEECCCCHHHHHHHHhhhhhcccchhhhhhhHHHHhcCChhhcCcCceEEEEECCCCee
Q ss_pred eeecCCCCCCCCCCceeEEEEEcCCCCCeEEEEc------CCCcEEEEecCCeEEEEeeCCcc--------cCCcEEEEE
Q 010362 383 LQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCN------KTSSIYIMTLQGQVVKSFSSGKR--------EGGDFVAAC 448 (512)
Q Consensus 383 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~------~~~~i~~~~~~~~~~~~~~~~~~--------~~~~~~~~~ 448 (512)
...-..+.. .....+....+..+++.++ ....++.++++.....-...... +.......+
T Consensus 202 ~~~~~~p~~------~~~~~a~v~~~~~iYv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~~a 275 (376)
T PRK14131 202 KNAGESPFL------GTAGSAVVIKGNKLWLINGEIKPGLRTDAVKQGKFTGNNLKWQKLPDLPPAPGGSSQEGVAGAFA 275 (376)
T ss_pred eECCcCCCC------CCCcceEEEECCEEEEEeeeECCCcCChhheEEEecCCCcceeecCCCCCCCcCCcCCccceEec
Q ss_pred ECCCCCEEEEEeCC----------------------CeEEEEEcCCCeeEEeccccCCCeEEEEEcCCCCeEEEEECCC
Q 010362 449 VSPKGEWIYCVGED----------------------RNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPHRNLLATYGEDC 505 (512)
Q Consensus 449 ~s~~g~~l~~g~~d----------------------g~i~iwd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~~~dg 505 (512)
...++++.+.|+.+ ..+.+||..+.+-...-..+...-...+..-++.+++.||...
T Consensus 276 ~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~lp~~r~~~~av~~~~~iyv~GG~~~ 354 (376)
T PRK14131 276 GYSNGVLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIYALVNGKWQKVGELPQGLAYGVSVSWNNGVLLIGGETA 354 (376)
T ss_pred eeECCEEEEeeccCCCCChhhhhcCCcccccCCcceeehheEEecCCcccccCcCCCCccceEEEEeCCEEEEEcCCCC
No 498
>PLN02153 epithiospecifier protein
Probab=89.26 E-value=20 Score=33.83 Aligned_cols=57 Identities=11% Similarity=0.015 Sum_probs=29.6
Q ss_pred CcEEEEecCCeEEEEeeCC-cccCCcEEEEEECCCCCEEEEEeCC--------------CeEEEEEcCCCee
Q 010362 419 SSIYIMTLQGQVVKSFSSG-KREGGDFVAACVSPKGEWIYCVGED--------------RNLYCFSHQSGKL 475 (512)
Q Consensus 419 ~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~s~~g~~l~~g~~d--------------g~i~iwd~~~~~~ 475 (512)
..+.+||............ ..........+...+++.++.|+.. ..++.+|..+.+-
T Consensus 217 ~~v~~yd~~~~~W~~~~~~g~~P~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~W 288 (341)
T PLN02153 217 NAVQFFDPASGKWTEVETTGAKPSARSVFAHAVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETLVW 288 (341)
T ss_pred CceEEEEcCCCcEEeccccCCCCCCcceeeeEEECCEEEEECcccCCccccccccccccccEEEEEcCccEE
Confidence 4578888875544443221 1011111122233456777777742 2678888876653
No 499
>TIGR01063 gyrA DNA gyrase, A subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV.
Probab=89.24 E-value=34 Score=36.51 Aligned_cols=234 Identities=13% Similarity=0.089 Sum_probs=116.9
Q ss_pred CCCCeEEEEeCCCeEEEEEccCCee-------eEEeccccccCeEEEEEecCCCEEEEEeCCCcEEEEeCC---C-----
Q 010362 273 RDSEMLASGSQDGKIKVWRIRSGQC-------LRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLK---S----- 337 (512)
Q Consensus 273 ~~~~~l~s~~~dg~i~vwd~~~~~~-------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~i~d~~---~----- 337 (512)
++...+++.+.+|.|+-.++.+-.. ...+.......+..+....+...++..+..|.++..... .
T Consensus 494 ~~e~~~vllS~~GyIKri~~~~~~~~~~~~~g~s~~klKe~D~l~~~~~~~t~d~LllfTs~Grv~~l~~~~IP~~~r~~ 573 (800)
T TIGR01063 494 ARENVVVTLSHNGYVKRVPVSAYRLQKRGGKGVSGADMKDDDFIEQLLVASTHDYLLFFTNRGKVYWLKVYQIPEASRTA 573 (800)
T ss_pred CcceEEEEEcCCCEEEecchhhhhhhcccCcCccccccCCCCeeEEEEEecCCCeEEEEeCCCcEEEEEhhhCcCCCcCC
Confidence 4455677788888888776543211 111111123445555555566677777778877665432 1
Q ss_pred -Ccee---EEeeCCccceeEEEEc--CCCCEEEEEeCCCcEEEEeCCCCceeeecCC-CCCCCCCCceeEEEEEcCCCCC
Q 010362 338 -GKLL---KEFRGHSSYVNDAIFT--NDGSRVVTASSDCTVKVWDLKSTDCLQTFKP-PPPLRGGDASVNSVHLFPKNPD 410 (512)
Q Consensus 338 -~~~~---~~~~~~~~~v~~~~~~--~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~ 410 (512)
|..+ ..+.....-+..+... .++..++..+.+|.++-.++........... ...+.. ...+..+...... .
T Consensus 574 ~G~~i~~ll~L~~~E~Iv~~i~~~~~~~~~~lvliT~~GyiKRi~l~~~~~~~r~G~~aiklke-~D~lv~v~~~~~~-d 651 (800)
T TIGR01063 574 KGKPIVNLLPLQPDERITAILSVKEFDDGLYLFFATKNGVVKKTSLTEFSNIRSNGIIAIKLDD-GDELISVRLTSGD-D 651 (800)
T ss_pred CCcCHHHhccCCCCCeEEEEEEeccCCCCCEEEEEeCCCEEEEEEhHHhhhhccCCcccccCCC-CCEEEEEEEeCCC-C
Confidence 1222 1122222234444432 3456889999999999887764332111000 001112 2344444433333 4
Q ss_pred eEEEEcCCCcEEEEecCCe--------EEEEeeCCcccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCC-------Cee
Q 010362 411 HIVVCNKTSSIYIMTLQGQ--------VVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQS-------GKL 475 (512)
Q Consensus 411 ~l~~~~~~~~i~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~dg~i~iwd~~~-------~~~ 475 (512)
.++..+..|.+..+....- ....... ..+..+..+..-.++.+++..+..|.+....+.. ++-
T Consensus 652 ~lll~Ts~Gr~~r~~v~eIp~~gr~~~Gv~~i~L--~~~E~Vv~~~~v~~~~~ll~vT~~G~~Kr~~l~e~~~~~R~~kG 729 (800)
T TIGR01063 652 EVMLGSKNGKAVRFPEEDVRPMGRAARGVRGIKL--KNEDFVVSLLVVSEESYLLIVTENGYGKRTSIEEYRETSRGGKG 729 (800)
T ss_pred EEEEEECCCcEEEEEhhhcCCcCCCCCCeecccC--CCCCEEEEEEEeccccEEEEEecCCcEEEEEHHHccccCCCCcc
Confidence 5666677777666655311 1111111 1223355544444556788888889877776431 222
Q ss_pred EE--eccccCCCeEEEEEcCCCCeEEEEECCCeEEEe
Q 010362 476 EH--LMKVHEKDVIGVTHHPHRNLLATYGEDCTMKLW 510 (512)
Q Consensus 476 ~~--~~~~h~~~v~~v~~~p~~~~l~s~~~dg~i~iW 510 (512)
+. .+....+.+..+....+...++..+.+|.+..+
T Consensus 730 v~~ikl~~~~d~lv~~~~v~~~~~v~liT~~G~~lrf 766 (800)
T TIGR01063 730 VKSIKITDRNGQVVGAIAVDDDDELMLITSAGKLIRT 766 (800)
T ss_pred eEEEEccCCCCeEEEEEEecCCCeEEEEecCCeEEEe
Confidence 22 222223344444444444445566677766443
No 500
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=89.06 E-value=2.3 Score=43.16 Aligned_cols=79 Identities=20% Similarity=0.341 Sum_probs=46.1
Q ss_pred CCCCEEEEEeCCCeEEEEEcCC----Ceeecccccccc---cee-----------eccCcceeEEEEcC----CCCeEEE
Q 010362 223 PDGQFLVSCSFDGFIEVWDYLS----GKLKKDLQYQAD---ETF-----------MMHDETVLCIEFSR----DSEMLAS 280 (512)
Q Consensus 223 ~~~~~l~sg~~dg~i~iwd~~~----~~~~~~~~~~~~---~~~-----------~~h~~~v~~l~~s~----~~~~l~s 280 (512)
++...++.+..||.+....... +........... ..+ ......+..+++++ +..++++
T Consensus 156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t 235 (547)
T PF11715_consen 156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT 235 (547)
T ss_dssp -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence 4677888888899888887654 111111111110 000 01124456666666 6789999
Q ss_pred EeCCCeEEEEEccCCeeeEEe
Q 010362 281 GSQDGKIKVWRIRSGQCLRRL 301 (512)
Q Consensus 281 ~~~dg~i~vwd~~~~~~~~~~ 301 (512)
.+.|+++|+||+.+++++...
T Consensus 236 l~~D~~LRiW~l~t~~~~~~~ 256 (547)
T PF11715_consen 236 LSRDHTLRIWSLETGQCLATI 256 (547)
T ss_dssp EETTSEEEEEETTTTCEEEEE
T ss_pred EeCCCeEEEEECCCCeEEEEe
Confidence 999999999999999996665
Done!